locus-tag class description KAF59_00005 PF00308 Bacterial dnaA protein KAF59_00005 PF08299 Bacterial dnaA protein helix-turn-helix KAF59_00005 PF11638 DnaA N-terminal domain KAF59_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KAF59_00010 PF02767 DNA polymerase III beta subunit, central domain KAF59_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KAF59_00015 PF02463 RecF/RecN/SMC N terminal domain KAF59_00020 PF01751 Toprim domain KAF59_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_00020 PF18053 DNA gyrase B subunit insert domain KAF59_00020 PF00986 DNA gyrase B subunit, carboxyl terminus KAF59_00020 PF00204 DNA gyrase B KAF59_00030 PF00011 Hsp20/alpha crystallin family KAF59_00035 PF00155 Aminotransferase class I and II KAF59_00040 PF05746 DALR anticodon binding domain KAF59_00040 PF02092 Glycyl-tRNA synthetase beta subunit KAF59_00045 PF02091 Glycyl-tRNA synthetase alpha subunit KAF59_00050 PF01169 Uncharacterized protein family UPF0016 KAF59_00060 PF01206 Sulfurtransferase TusA KAF59_00070 PF00107 Zinc-binding dehydrogenase KAF59_00070 PF08240 Alcohol dehydrogenase GroES-like domain KAF59_00075 PF00291 Pyridoxal-phosphate dependent enzyme KAF59_00075 PF00585 C-terminal regulatory domain of Threonine dehydratase KAF59_00080 PF00920 Dehydratase family KAF59_00085 PF01063 Amino-transferase class IV KAF59_00095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KAF59_00095 PF00205 Thiamine pyrophosphate enzyme, central domain KAF59_00095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KAF59_00100 PF13335 Magnesium chelatase, subunit ChlI C-terminal KAF59_00100 PF01078 Magnesium chelatase, subunit ChlI KAF59_00105 PF01553 Acyltransferase KAF59_00110 PF01323 DSBA-like thioredoxin domain KAF59_00115 PF01636 Phosphotransferase enzyme family KAF59_00120 PF13746 4Fe-4S dicluster domain KAF59_00120 PF12801 4Fe-4S binding domain KAF59_00120 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase KAF59_00125 PF06288 Protein of unknown function (DUF1040) KAF59_00130 PF07070 SpoOM protein KAF59_00135 PF03006 Haemolysin-III related KAF59_00145 PF02386 Cation transport protein KAF59_00150 PF02080 TrkA-C domain KAF59_00150 PF02254 TrkA-N domain KAF59_00155 PF01189 16S rRNA methyltransferase RsmB/F KAF59_00155 PF01029 NusB family KAF59_00160 PF02911 Formyl transferase, C-terminal domain KAF59_00160 PF00551 Formyl transferase KAF59_00165 PF01327 Polypeptide deformylase KAF59_00170 PF01476 LysM domain KAF59_00175 PF17782 DprA winged helix domain KAF59_00175 PF02481 DNA recombination-mediator protein A KAF59_00180 PF04361 Protein of unknown function (DUF494) KAF59_00185 PF01396 Topoisomerase DNA binding C4 zinc finger KAF59_00190 PF02222 ATP-grasp domain KAF59_00190 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KAF59_00195 PF00731 AIR carboxylase KAF59_00200 PF01300 Telomere recombination KAF59_00205 PF01218 Coproporphyrinogen III oxidase KAF59_00210 PF01488 Shikimate / quinate 5-dehydrogenase KAF59_00210 PF08501 Shikimate dehydrogenase substrate binding domain KAF59_00210 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KAF59_00220 PF00132 Bacterial transferase hexapeptide (six repeats) KAF59_00260 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KAF59_00265 PF13667 ThiC-associated domain KAF59_00265 PF01964 Radical SAM ThiC family KAF59_00270 PF02581 Thiamine monophosphate synthase KAF59_00275 PF00899 ThiF family KAF59_00280 PF02597 ThiS family KAF59_00285 PF05690 Thiazole biosynthesis protein ThiG KAF59_00290 PF04055 Radical SAM superfamily KAF59_00290 PF06968 Biotin and Thiamin Synthesis associated domain KAF59_00295 PF01321 Creatinase/Prolidase N-terminal domain KAF59_00295 PF00557 Metallopeptidase family M24 KAF59_00295 PF01321 Creatinase/Prolidase N-terminal domain KAF59_00295 PF00557 Metallopeptidase family M24 KAF59_00300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_00300 PF03466 LysR substrate binding domain KAF59_00305 PF07690 Major Facilitator Superfamily KAF59_00315 PF01037 Lrp/AsnC ligand binding domain KAF59_00320 PF00990 Diguanylate cyclase, GGDEF domain KAF59_00320 PF08448 PAS fold KAF59_00320 PF00563 EAL domain KAF59_00325 PF04445 Putative SAM-dependent methyltransferase KAF59_00335 PF00892 EamA-like transporter family KAF59_00340 PF00582 Universal stress protein family KAF59_00345 PF00210 Ferritin-like domain KAF59_00350 PF10625 Universal stress protein B (UspB) KAF59_00365 PF02646 RmuC family KAF59_00370 PF01209 ubiE/COQ5 methyltransferase family KAF59_00375 PF02036 SCP-2 sterol transfer family KAF59_00380 PF03109 ABC1 family KAF59_00385 PF02416 mttA/Hcf106 family KAF59_00390 PF02416 mttA/Hcf106 family KAF59_00395 PF00902 Sec-independent protein translocase protein (TatC) KAF59_00400 PF00034 Cytochrome c KAF59_00400 PF03150 Di-haem cytochrome c peroxidase KAF59_00405 PF01554 MatE KAF59_00415 PF01726 LexA DNA binding domain KAF59_00415 PF00717 Peptidase S24-like KAF59_00420 PF01553 Acyltransferase KAF59_00425 PF01040 UbiA prenyltransferase family KAF59_00430 PF04345 Chorismate lyase KAF59_00435 PF03748 Flagellar basal body-associated protein FliL KAF59_00440 PF02203 Tar ligand binding domain homologue KAF59_00440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_00440 PF00672 HAMP domain KAF59_00445 PF01694 Rhomboid family KAF59_00445 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease KAF59_00450 PF00581 Rhodanese-like domain KAF59_00455 PF01026 TatD related DNase KAF59_00460 PF00490 Delta-aminolevulinic acid dehydratase KAF59_00470 PF00476 DNA polymerase family A KAF59_00470 PF01612 3'-5' exonuclease KAF59_00470 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KAF59_00470 PF01367 5'-3' exonuclease, C-terminal SAM fold KAF59_00475 PF01926 50S ribosome-binding GTPase KAF59_00480 PF00034 Cytochrome c KAF59_00490 PF04220 Der GTPase activator (YihI) KAF59_00495 PF10675 Protein of unknown function (DUF2489) KAF59_00500 PF04055 Radical SAM superfamily KAF59_00500 PF06969 HemN C-terminal domain KAF59_00505 PF07219 HemY protein N-terminus KAF59_00510 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase KAF59_00515 PF02602 Uroporphyrinogen-III synthase HemD KAF59_00520 PF03900 Porphobilinogen deaminase, C-terminal domain KAF59_00520 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KAF59_00525 PF12633 Adenylate cyclase NT domain KAF59_00525 PF01295 Adenylate cyclase, class-I KAF59_00530 PF01491 Frataxin-like domain KAF59_00540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KAF59_00540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KAF59_00545 PF01678 Diaminopimelate epimerase KAF59_00550 PF04340 Protein of unknown function, DUF484 KAF59_00555 PF02899 Phage integrase, N-terminal SAM-like domain KAF59_00555 PF00589 Phage integrase family KAF59_00560 PF13419 Haloacid dehalogenase-like hydrolase KAF59_00565 PF00563 EAL domain KAF59_00565 PF10442 FIST C domain KAF59_00565 PF00990 Diguanylate cyclase, GGDEF domain KAF59_00565 PF08495 FIST N domain KAF59_00585 PF12146 Serine aminopeptidase, S33 KAF59_00590 PF01810 LysE type translocator KAF59_00595 PF00563 EAL domain KAF59_00595 PF08668 HDOD domain KAF59_00600 PF00210 Ferritin-like domain KAF59_00635 PF00448 SRP54-type protein, GTPase domain KAF59_00635 PF02881 SRP54-type protein, helical bundle domain KAF59_00640 PF00005 ABC transporter KAF59_00645 PF18075 FtsX extracellular domain KAF59_00650 PF00140 Sigma-70 factor, region 1.2 KAF59_00650 PF04542 Sigma-70 region 2 KAF59_00650 PF04545 Sigma-70, region 4 KAF59_00655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KAF59_00655 PF07992 Pyridine nucleotide-disulphide oxidoreductase KAF59_00660 PF00440 Bacterial regulatory proteins, tetR family KAF59_00670 PF05958 tRNA (Uracil-5-)-methyltransferase KAF59_00675 PF07715 TonB-dependent Receptor Plug Domain KAF59_00675 PF00593 TonB dependent receptor KAF59_00680 PF05922 Peptidase inhibitor I9 KAF59_00680 PF00082 Subtilase family KAF59_00680 PF04151 Bacterial pre-peptidase C-terminal domain KAF59_00685 PF01177 Asp/Glu/Hydantoin racemase KAF59_00755 PF00962 Adenosine/AMP deaminase KAF59_00760 PF00563 EAL domain KAF59_00760 PF00990 Diguanylate cyclase, GGDEF domain KAF59_00760 PF03707 Bacterial signalling protein N terminal repeat KAF59_00760 PF13188 PAS domain KAF59_00765 PF02954 Bacterial regulatory protein, Fis family KAF59_00765 PF00158 Sigma-54 interaction domain KAF59_00765 PF00072 Response regulator receiver domain KAF59_00770 PF00989 PAS fold KAF59_00770 PF00512 His Kinase A (phospho-acceptor) domain KAF59_00770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_00780 PF03951 Glutamine synthetase, beta-Grasp domain KAF59_00780 PF00120 Glutamine synthetase, catalytic domain KAF59_00790 PF00009 Elongation factor Tu GTP binding domain KAF59_00790 PF00679 Elongation factor G C-terminus KAF59_00790 PF03144 Elongation factor Tu domain 2 KAF59_00800 PF03631 Virulence factor BrkB KAF59_00805 PF02580 D-Tyr-tRNA(Tyr) deacylase KAF59_00810 PF00583 Acetyltransferase (GNAT) family KAF59_00810 PF09500 Putative thioesterase (yiiD_Cterm) KAF59_00820 PF01293 Phosphoenolpyruvate carboxykinase KAF59_00825 PF01430 Hsp33 protein KAF59_00830 PF01479 S4 domain KAF59_00835 PF11356 Type II secretion system protein C KAF59_00840 PF03958 Bacterial type II/III secretion system short domain KAF59_00840 PF00263 Bacterial type II and III secretion system protein KAF59_00845 PF00437 Type II/IV secretion system protein KAF59_00850 PF00482 Type II secretion system (T2SS), protein F KAF59_00855 PF07963 Prokaryotic N-terminal methylation motif KAF59_00855 PF08334 Type II secretion system (T2SS), protein G KAF59_00860 PF12019 Type II transport protein GspH KAF59_00865 PF07963 Prokaryotic N-terminal methylation motif KAF59_00865 PF02501 Type II secretion system (T2SS), protein I KAF59_00870 PF11612 Type II secretion system (T2SS), protein J KAF59_00870 PF07963 Prokaryotic N-terminal methylation motif KAF59_00875 PF03934 Type II secretion system (T2SS), protein K KAF59_00880 PF12693 GspL periplasmic domain KAF59_00880 PF05134 Type II secretion system (T2SS), protein L KAF59_00885 PF04612 Type II secretion system (T2SS), protein M KAF59_00890 PF01203 Type II secretion system (T2SS), protein N KAF59_00895 PF00459 Inositol monophosphatase family KAF59_00900 PF00293 NUDIX domain KAF59_00905 PF01106 NifU-like domain KAF59_00905 PF01521 Iron-sulphur cluster biosynthesis KAF59_00910 PF00156 Phosphoribosyl transferase domain KAF59_00920 PF00561 alpha/beta hydrolase fold KAF59_00930 PF17674 HHH domain KAF59_00930 PF00575 S1 RNA binding domain KAF59_00930 PF09371 Tex-like protein N-terminal domain KAF59_00930 PF16921 Tex protein YqgF-like domain KAF59_00935 PF03449 Transcription elongation factor, N-terminal KAF59_00935 PF01272 Transcription elongation factor, GreA/GreB, C-term KAF59_00940 PF00486 Transcriptional regulatory protein, C terminal KAF59_00940 PF00072 Response regulator receiver domain KAF59_00945 PF00672 HAMP domain KAF59_00945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_00945 PF00512 His Kinase A (phospho-acceptor) domain KAF59_00950 PF00860 Permease family KAF59_00955 PF00270 DEAD/DEAH box helicase KAF59_00955 PF00271 Helicase conserved C-terminal domain KAF59_00955 PF17191 RecG wedge domain KAF59_00960 PF13291 ACT domain KAF59_00960 PF04607 Region found in RelA / SpoT proteins KAF59_00960 PF02824 TGS domain KAF59_00965 PF01192 RNA polymerase Rpb6 KAF59_00970 PF00625 Guanylate kinase KAF59_00975 PF02592 Putative vitamin uptake transporter KAF59_00980 PF00474 Sodium:solute symporter family KAF59_00990 PF00999 Sodium/hydrogen exchanger family KAF59_00990 PF02080 TrkA-C domain KAF59_00990 PF03471 Transporter associated domain KAF59_00995 PF00072 Response regulator receiver domain KAF59_00995 PF00196 Bacterial regulatory proteins, luxR family KAF59_01000 PF02683 Cytochrome C biogenesis protein transmembrane region KAF59_01000 PF11412 Disulphide bond corrector protein DsbC KAF59_01010 PF03605 Anaerobic c4-dicarboxylate membrane transporter KAF59_01015 PF00206 Lyase KAF59_01015 PF10415 Fumarase C C-terminus KAF59_01020 PF17158 Membrane-associated sensor, integral membrane domain KAF59_01020 PF00990 Diguanylate cyclase, GGDEF domain KAF59_01025 PF04186 FxsA cytoplasmic membrane protein KAF59_01030 PF00588 SpoU rRNA Methylase family KAF59_01035 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KAF59_01035 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KAF59_01040 PF16527 Two-component sensor protein CpxA, periplasmic domain KAF59_01040 PF00672 HAMP domain KAF59_01040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_01040 PF00512 His Kinase A (phospho-acceptor) domain KAF59_01045 PF00072 Response regulator receiver domain KAF59_01045 PF00486 Transcriptional regulatory protein, C terminal KAF59_01055 PF01545 Cation efflux family KAF59_01055 PF16916 Dimerisation domain of Zinc Transporter KAF59_01060 PF00365 Phosphofructokinase KAF59_01065 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KAF59_01070 PF06005 Cell division protein ZapB KAF59_01075 PF02219 Methylenetetrahydrofolate reductase KAF59_01080 PF00696 Amino acid kinase family KAF59_01080 PF03447 Homoserine dehydrogenase, NAD binding domain KAF59_01080 PF00742 Homoserine dehydrogenase KAF59_01085 PF01053 Cys/Met metabolism PLP-dependent enzyme KAF59_01090 PF01340 Met Apo-repressor, MetJ KAF59_01095 PF00390 Malic enzyme, N-terminal domain KAF59_01095 PF03949 Malic enzyme, NAD binding domain KAF59_01100 PF01197 Ribosomal protein L31 KAF59_01105 PF00270 DEAD/DEAH box helicase KAF59_01105 PF00271 Helicase conserved C-terminal domain KAF59_01105 PF17764 3′ DNA-binding domain (3′BD) KAF59_01105 PF18074 Primosomal protein N C-terminal domain KAF59_01105 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KAF59_01110 PF00356 Bacterial regulatory proteins, lacI family KAF59_01115 PF05036 Sporulation related domain KAF59_01120 PF00227 Proteasome subunit KAF59_01125 PF10431 C-terminal, D2-small domain, of ClpB protein KAF59_01125 PF07724 AAA domain (Cdc48 subfamily) KAF59_01125 PF00004 ATPase family associated with various cellular activities (AAA) KAF59_01130 PF01040 UbiA prenyltransferase family KAF59_01135 PF03737 Aldolase/RraA KAF59_01140 PF01554 MatE KAF59_01145 PF00121 Triosephosphate isomerase KAF59_01165 PF08220 DeoR-like helix-turn-helix domain KAF59_01165 PF00455 DeoR C terminal sensor domain KAF59_01170 PF00166 Chaperonin 10 Kd subunit KAF59_01175 PF00118 TCP-1/cpn60 chaperonin family KAF59_01185 PF04055 Radical SAM superfamily KAF59_01190 PF01132 Elongation factor P (EF-P) OB domain KAF59_01190 PF08207 Elongation factor P (EF-P) KOW-like domain KAF59_01190 PF09285 Elongation factor P, C-terminal KAF59_01195 PF02313 Fumarate reductase subunit D KAF59_01200 PF02300 Fumarate reductase subunit C KAF59_01205 PF13085 2Fe-2S iron-sulfur cluster binding domain KAF59_01205 PF13183 4Fe-4S dicluster domain KAF59_01210 PF00890 FAD binding domain KAF59_01210 PF02910 Fumarate reductase flavoprotein C-term KAF59_01215 PF00152 tRNA synthetases class II (D, K and N) KAF59_01220 PF00581 Rhodanese-like domain KAF59_01225 PF02556 Preprotein translocase subunit SecB KAF59_01230 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KAF59_01230 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KAF59_01235 PF00132 Bacterial transferase hexapeptide (six repeats) KAF59_01235 PF06426 Serine acetyltransferase, N-terminal KAF59_01245 PF00311 Phosphoenolpyruvate carboxylase KAF59_01250 PF01546 Peptidase family M20/M25/M40 KAF59_01250 PF07687 Peptidase dimerisation domain KAF59_01255 PF01118 Semialdehyde dehydrogenase, NAD binding domain KAF59_01255 PF02774 Semialdehyde dehydrogenase, dimerisation domain KAF59_01260 PF00696 Amino acid kinase family KAF59_01265 PF00764 Arginosuccinate synthase KAF59_01270 PF14698 Argininosuccinate lyase C-terminal KAF59_01270 PF00206 Lyase KAF59_01280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KAF59_01280 PF07992 Pyridine nucleotide-disulphide oxidoreductase KAF59_01285 PF00462 Glutaredoxin KAF59_01285 PF08534 Redoxin KAF59_01290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_01290 PF03466 LysR substrate binding domain KAF59_01295 PF17092 Penicillin-binding protein OB-like domain KAF59_01295 PF00912 Transglycosylase KAF59_01295 PF00905 Penicillin binding protein transpeptidase domain KAF59_01315 PF04351 Pilus assembly protein, PilP KAF59_01320 PF11741 AMIN domain KAF59_01320 PF00263 Bacterial type II and III secretion system protein KAF59_01320 PF03958 Bacterial type II/III secretion system short domain KAF59_01320 PF07660 Secretin and TonB N terminus short domain KAF59_01325 PF01202 Shikimate kinase KAF59_01330 PF01761 3-dehydroquinate synthase KAF59_01340 PF02086 D12 class N6 adenine-specific DNA methyltransferase KAF59_01345 PF00834 Ribulose-phosphate 3 epimerase family KAF59_01350 PF13419 Haloacid dehalogenase-like hydrolase KAF59_01355 PF00579 tRNA synthetases class I (W and Y) KAF59_01370 PF04055 Radical SAM superfamily KAF59_01370 PF18693 TRAM domain KAF59_01370 PF00919 Uncharacterized protein family UPF0004 KAF59_01375 PF00117 Glutamine amidotransferase class-I KAF59_01380 PF00202 Aminotransferase class-III KAF59_01385 PF04958 Arginine N-succinyltransferase beta subunit KAF59_01390 PF00171 Aldehyde dehydrogenase family KAF59_01400 PF13545 Crp-like helix-turn-helix domain KAF59_01400 PF00027 Cyclic nucleotide-binding domain KAF59_01405 PF00485 Phosphoribulokinase / Uridine kinase family KAF59_01410 PF06794 Uncharacterised protein family (UPF0270) KAF59_01415 PF00561 alpha/beta hydrolase fold KAF59_01425 PF12848 ABC transporter KAF59_01425 PF00005 ABC transporter KAF59_01430 PF02525 Flavodoxin-like fold KAF59_01435 PF00999 Sodium/hydrogen exchanger family KAF59_01435 PF02254 TrkA-N domain KAF59_01445 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KAF59_01450 PF01112 Asparaginase KAF59_01455 PF00709 Adenylosuccinate synthetase KAF59_01460 PF08238 Sel1 repeat KAF59_01465 PF00884 Sulfatase KAF59_01465 PF11893 Domain of unknown function (DUF3413) KAF59_01470 PF00575 S1 RNA binding domain KAF59_01470 PF00773 RNB domain KAF59_01470 PF08206 Ribonuclease B OB domain KAF59_01470 PF08461 Ribonuclease R winged-helix domain KAF59_01470 PF17876 Cold shock domain KAF59_01475 PF08032 RNA 2'-O ribose methyltransferase substrate binding KAF59_01475 PF00588 SpoU rRNA Methylase family KAF59_01480 PF00338 Ribosomal protein S10p/S20e KAF59_01485 PF00297 Ribosomal protein L3 KAF59_01490 PF00573 Ribosomal protein L4/L1 family KAF59_01495 PF00276 Ribosomal protein L23 KAF59_01500 PF03947 Ribosomal Proteins L2, C-terminal domain KAF59_01500 PF00181 Ribosomal Proteins L2, RNA binding domain KAF59_01505 PF00203 Ribosomal protein S19 KAF59_01510 PF00237 Ribosomal protein L22p/L17e KAF59_01515 PF00189 Ribosomal protein S3, C-terminal domain KAF59_01515 PF07650 KH domain KAF59_01520 PF00252 Ribosomal protein L16p/L10e KAF59_01525 PF00831 Ribosomal L29 protein KAF59_01530 PF00366 Ribosomal protein S17 KAF59_01535 PF00238 Ribosomal protein L14p/L23e KAF59_01540 PF00467 KOW motif KAF59_01540 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KAF59_01545 PF00281 Ribosomal protein L5 KAF59_01545 PF00673 ribosomal L5P family C-terminus KAF59_01550 PF00253 Ribosomal protein S14p/S29e KAF59_01555 PF00410 Ribosomal protein S8 KAF59_01560 PF00347 Ribosomal protein L6 KAF59_01565 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KAF59_01570 PF00333 Ribosomal protein S5, N-terminal domain KAF59_01570 PF03719 Ribosomal protein S5, C-terminal domain KAF59_01575 PF00327 Ribosomal protein L30p/L7e KAF59_01580 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KAF59_01585 PF00344 SecY translocase KAF59_01590 PF00444 Ribosomal protein L36 KAF59_01595 PF00416 Ribosomal protein S13/S18 KAF59_01600 PF00411 Ribosomal protein S11 KAF59_01605 PF00163 Ribosomal protein S4/S9 N-terminal domain KAF59_01605 PF01479 S4 domain KAF59_01610 PF01000 RNA polymerase Rpb3/RpoA insert domain KAF59_01610 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KAF59_01610 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KAF59_01615 PF01196 Ribosomal protein L17 KAF59_01625 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KAF59_01625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KAF59_01630 PF08525 Opacity-associated protein A N-terminal motif KAF59_01630 PF04225 Opacity-associated protein A LysM-like domain KAF59_01635 PF00892 EamA-like transporter family KAF59_01640 PF13673 Acetyltransferase (GNAT) domain KAF59_01645 PF03880 DbpA RNA binding domain KAF59_01645 PF00270 DEAD/DEAH box helicase KAF59_01645 PF00271 Helicase conserved C-terminal domain KAF59_01655 PF02872 5'-nucleotidase, C-terminal domain KAF59_01655 PF00149 Calcineurin-like phosphoesterase KAF59_01660 PF14824 Sirohaem biosynthesis protein central KAF59_01660 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KAF59_01660 PF10414 Sirohaem synthase dimerisation region KAF59_01665 PF01507 Phosphoadenosine phosphosulfate reductase family KAF59_01670 PF00009 Elongation factor Tu GTP binding domain KAF59_01695 PF00005 ABC transporter KAF59_01705 PF10795 Protein of unknown function (DUF2607) KAF59_01710 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) KAF59_01715 PF01625 Peptide methionine sulfoxide reductase KAF59_01720 PF01103 Surface antigen KAF59_01720 PF17243 POTRA domain TamA domain 1 KAF59_01720 PF07244 Surface antigen variable number repeat KAF59_01725 PF04357 TamB, inner membrane protein subunit of TAM complex KAF59_01730 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like KAF59_01735 PF00719 Inorganic pyrophosphatase KAF59_01740 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KAF59_01745 PF01225 Mur ligase family, catalytic domain KAF59_01745 PF02875 Mur ligase family, glutamate ligase domain KAF59_01745 PF08245 Mur ligase middle domain KAF59_01750 PF02441 Flavoprotein KAF59_01760 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_01765 PF00005 ABC transporter KAF59_01770 PF04751 Protein of unknown function (DUF615) KAF59_01775 PF01523 Putative modulator of DNA gyrase KAF59_01780 PF00571 CBS domain KAF59_01780 PF01769 Divalent cation transporter KAF59_01780 PF03448 MgtE intracellular N domain KAF59_01785 PF00381 PTS HPr component phosphorylation site KAF59_01790 PF03668 P-loop ATPase protein family KAF59_01795 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KAF59_01800 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KAF59_01805 PF00309 Sigma-54 factor, Activator interacting domain (AID) KAF59_01805 PF04963 Sigma-54 factor, core binding domain KAF59_01805 PF04552 Sigma-54, DNA binding domain KAF59_01810 PF00005 ABC transporter KAF59_01810 PF12399 Branched-chain amino acid ATP-binding cassette transporter KAF59_01815 PF03968 OstA-like protein KAF59_01830 PF01380 SIS domain KAF59_01830 PF00571 CBS domain KAF59_01835 PF01699 Sodium/calcium exchanger protein KAF59_01840 PF00005 ABC transporter KAF59_01845 PF02405 Permease MlaE KAF59_01850 PF02470 MlaD protein KAF59_01855 PF05494 MlaC protein KAF59_01865 PF01722 BolA-like protein KAF59_01870 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KAF59_01875 PF01553 Acyltransferase KAF59_01880 PF01042 Endoribonuclease L-PSP KAF59_01885 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain KAF59_01885 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain KAF59_01890 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KAF59_01890 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KAF59_01895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KAF59_01895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KAF59_01900 PF02562 PhoH-like protein KAF59_01900 PF13638 PIN domain KAF59_01905 PF00271 Helicase conserved C-terminal domain KAF59_01905 PF12137 RNA polymerase recycling family C-terminal KAF59_01905 PF00176 SNF2 family N-terminal domain KAF59_01905 PF18339 RapA N-terminal Tudor like domain 1 KAF59_01905 PF18337 RapA N-terminal Tudor like domain KAF59_01910 PF00849 RNA pseudouridylate synthase KAF59_01915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KAF59_01915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KAF59_01920 PF10458 Valyl tRNA synthetase tRNA binding arm KAF59_01920 PF08264 Anticodon-binding domain of tRNA KAF59_01920 PF00133 tRNA synthetases class I (I, L, M and V) KAF59_01925 PF04364 DNA polymerase III chi subunit, HolC KAF59_01930 PF00883 Cytosol aminopeptidase family, catalytic domain KAF59_01930 PF02789 Cytosol aminopeptidase family, N-terminal domain KAF59_01935 PF03739 Lipopolysaccharide export system permease LptF/LptG KAF59_01940 PF03739 Lipopolysaccharide export system permease LptF/LptG KAF59_01955 PF00072 Response regulator receiver domain KAF59_02000 PF00694 Aconitase C-terminal domain KAF59_02005 PF00330 Aconitase family (aconitate hydratase) KAF59_02010 PF00180 Isocitrate/isopropylmalate dehydrogenase KAF59_02015 PF08502 LeuA allosteric (dimerisation) domain KAF59_02015 PF00682 HMGL-like KAF59_02025 PF01569 PAP2 superfamily KAF59_02035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_02035 PF03466 LysR substrate binding domain KAF59_02040 PF00501 AMP-binding enzyme KAF59_02045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KAF59_02045 PF00205 Thiamine pyrophosphate enzyme, central domain KAF59_02045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KAF59_02050 PF10369 Small subunit of acetolactate synthase KAF59_02055 PF01842 ACT domain KAF59_02055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KAF59_02055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KAF59_02060 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KAF59_02065 PF01812 5-formyltetrahydrofolate cyclo-ligase family KAF59_02075 PF05164 Cell division protein ZapA KAF59_02080 PF03695 Uncharacterised protein family (UPF0149) KAF59_02085 PF01494 FAD binding domain KAF59_02090 PF01494 FAD binding domain KAF59_02105 PF03937 Flavinator of succinate dehydrogenase KAF59_02115 PF02910 Fumarate reductase flavoprotein C-term KAF59_02115 PF00890 FAD binding domain KAF59_02120 PF08281 Sigma-70, region 4 KAF59_02120 PF04542 Sigma-70 region 2 KAF59_02125 PF03873 Anti sigma-E protein RseA, C-terminal domain KAF59_02125 PF03872 Anti sigma-E protein RseA, N-terminal domain KAF59_02130 PF03888 MucB/RseB N-terminal domain KAF59_02130 PF17188 MucB/RseB C-terminal domain KAF59_02140 PF03144 Elongation factor Tu domain 2 KAF59_02140 PF06421 GTP-binding protein LepA C-terminus KAF59_02140 PF00009 Elongation factor Tu GTP binding domain KAF59_02140 PF00679 Elongation factor G C-terminus KAF59_02145 PF10502 Signal peptidase, peptidase S26 KAF59_02150 PF00035 Double-stranded RNA binding motif KAF59_02150 PF14622 Ribonuclease-III-like KAF59_02155 PF01926 50S ribosome-binding GTPase KAF59_02155 PF07650 KH domain KAF59_02160 PF11967 Recombination protein O N terminal KAF59_02160 PF02565 Recombination protein O C terminal KAF59_02165 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KAF59_02170 PF01648 4'-phosphopantetheinyl transferase superfamily KAF59_02185 PF00990 Diguanylate cyclase, GGDEF domain KAF59_02185 PF00563 EAL domain KAF59_02190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_02190 PF00672 HAMP domain KAF59_02190 PF01627 Hpt domain KAF59_02190 PF00072 Response regulator receiver domain KAF59_02190 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KAF59_02190 PF00512 His Kinase A (phospho-acceptor) domain KAF59_02195 PF05958 tRNA (Uracil-5-)-methyltransferase KAF59_02195 PF01938 TRAM domain KAF59_02200 PF02824 TGS domain KAF59_02200 PF04607 Region found in RelA / SpoT proteins KAF59_02200 PF13291 ACT domain KAF59_02205 PF03819 MazG nucleotide pyrophosphohydrolase domain KAF59_02210 PF06418 CTP synthase N-terminus KAF59_02210 PF00117 Glutamine amidotransferase class-I KAF59_02215 PF00113 Enolase, C-terminal TIM barrel domain KAF59_02215 PF03952 Enolase, N-terminal domain KAF59_02220 PF12627 Probable RNA and SrmB- binding site of polymerase A KAF59_02220 PF01743 Poly A polymerase head domain KAF59_02220 PF01966 HD domain KAF59_02225 PF01471 Putative peptidoglycan binding domain KAF59_02225 PF13401 AAA domain KAF59_02240 PF01384 Phosphate transporter family KAF59_02245 PF01865 Protein of unknown function DUF47 KAF59_02250 PF01928 CYTH domain KAF59_02255 PF02743 Cache domain KAF59_02255 PF00672 HAMP domain KAF59_02255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_02260 PF03710 Glutamate-ammonia ligase adenylyltransferase KAF59_02260 PF08335 GlnD PII-uridylyltransferase KAF59_02265 PF00294 pfkB family carbohydrate kinase KAF59_02265 PF01467 Cytidylyltransferase-like KAF59_02270 PF02321 Outer membrane efflux protein KAF59_02275 PF00293 NUDIX domain KAF59_02280 PF06853 Protein of unknown function (DUF1249) KAF59_02285 PF00149 Calcineurin-like phosphoesterase KAF59_02290 PF05728 Uncharacterised protein family (UPF0227) KAF59_02295 PF00204 DNA gyrase B KAF59_02295 PF00986 DNA gyrase B subunit, carboxyl terminus KAF59_02295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_02295 PF01751 Toprim domain KAF59_02300 PF03989 DNA gyrase C-terminal domain, beta-propeller KAF59_02300 PF00521 DNA gyrase/topoisomerase IV, subunit A KAF59_02305 PF03884 DNA gyrase inhibitor YacG KAF59_02310 PF07072 Cell division protein KAF59_02315 PF01121 Dephospho-CoA kinase KAF59_02320 PF01478 Type IV leader peptidase family KAF59_02320 PF06750 Bacterial Peptidase A24 N-terminal domain KAF59_02325 PF00482 Type II secretion system (T2SS), protein F KAF59_02330 PF00437 Type II/IV secretion system protein KAF59_02330 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KAF59_02335 PF07963 Prokaryotic N-terminal methylation motif KAF59_02335 PF00114 Pilin (bacterial filament) KAF59_02340 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KAF59_02340 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KAF59_02345 PF01510 N-acetylmuramoyl-L-alanine amidase KAF59_02350 PF00258 Flavodoxin KAF59_02355 PF00589 Phage integrase family KAF59_02355 PF02899 Phage integrase, N-terminal SAM-like domain KAF59_02360 PF13098 Thioredoxin-like domain KAF59_02360 PF10411 Disulfide bond isomerase protein N-terminus KAF59_02365 PF01368 DHH family KAF59_02365 PF02272 DHHA1 domain KAF59_02365 PF17768 RecJ OB domain KAF59_02370 PF02872 5'-nucleotidase, C-terminal domain KAF59_02370 PF00149 Calcineurin-like phosphoesterase KAF59_02375 PF00392 Bacterial regulatory proteins, gntR family KAF59_02375 PF07729 FCD domain KAF59_02380 PF17831 Pyruvate dehydrogenase E1 component middle domain KAF59_02380 PF00456 Transketolase, thiamine diphosphate binding domain KAF59_02385 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KAF59_02385 PF02817 e3 binding domain KAF59_02385 PF00364 Biotin-requiring enzyme KAF59_02390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KAF59_02390 PF07992 Pyridine nucleotide-disulphide oxidoreductase KAF59_02400 PF01795 MraW methylase family KAF59_02405 PF04999 Cell division protein FtsL KAF59_02410 PF03717 Penicillin-binding Protein dimerisation domain KAF59_02410 PF00905 Penicillin binding protein transpeptidase domain KAF59_02415 PF01225 Mur ligase family, catalytic domain KAF59_02415 PF02875 Mur ligase family, glutamate ligase domain KAF59_02415 PF08245 Mur ligase middle domain KAF59_02420 PF08245 Mur ligase middle domain KAF59_02420 PF02875 Mur ligase family, glutamate ligase domain KAF59_02420 PF01225 Mur ligase family, catalytic domain KAF59_02425 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KAF59_02425 PF00953 Glycosyl transferase family 4 KAF59_02430 PF08245 Mur ligase middle domain KAF59_02430 PF02875 Mur ligase family, glutamate ligase domain KAF59_02435 PF01098 Cell cycle protein KAF59_02440 PF03033 Glycosyltransferase family 28 N-terminal domain KAF59_02440 PF04101 Glycosyltransferase family 28 C-terminal domain KAF59_02445 PF08245 Mur ligase middle domain KAF59_02445 PF01225 Mur ligase family, catalytic domain KAF59_02445 PF02875 Mur ligase family, glutamate ligase domain KAF59_02450 PF03799 Cell division protein FtsQ KAF59_02450 PF08478 POTRA domain, FtsQ-type KAF59_02455 PF02491 SHS2 domain inserted in FTSA KAF59_02460 PF00091 Tubulin/FtsZ family, GTPase domain KAF59_02460 PF12327 FtsZ family, C-terminal domain KAF59_02465 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KAF59_02475 PF02810 SEC-C motif KAF59_02475 PF01043 SecA preprotein cross-linking domain KAF59_02475 PF07517 SecA DEAD-like domain KAF59_02475 PF07516 SecA Wing and Scaffold domain KAF59_02480 PF00293 NUDIX domain KAF59_02485 PF01113 Dihydrodipicolinate reductase, N-terminus KAF59_02485 PF05173 Dihydrodipicolinate reductase, C-terminus KAF59_02495 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KAF59_02495 PF00117 Glutamine amidotransferase class-I KAF59_02500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KAF59_02500 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KAF59_02500 PF02142 MGS-like domain KAF59_02515 PF00005 ABC transporter KAF59_02520 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KAF59_02525 PF01925 Sulfite exporter TauE/SafE KAF59_02530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_02530 PF03466 LysR substrate binding domain KAF59_02535 PF03458 UPF0126 domain KAF59_02540 PF01497 Periplasmic binding protein KAF59_02550 PF01048 Phosphorylase superfamily KAF59_02560 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KAF59_02560 PF07992 Pyridine nucleotide-disulphide oxidoreductase KAF59_02565 PF00310 Glutamine amidotransferases class-II KAF59_02565 PF04898 Glutamate synthase central domain KAF59_02565 PF01645 Conserved region in glutamate synthase KAF59_02565 PF01493 GXGXG motif KAF59_02570 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KAF59_02570 PF07992 Pyridine nucleotide-disulphide oxidoreductase KAF59_02575 PF01493 GXGXG motif KAF59_02575 PF00310 Glutamine amidotransferases class-II KAF59_02575 PF01645 Conserved region in glutamate synthase KAF59_02575 PF04898 Glutamate synthase central domain KAF59_02580 PF04055 Radical SAM superfamily KAF59_02580 PF16199 Radical_SAM C-terminal domain KAF59_02585 PF00360 Phytochrome region KAF59_02585 PF00990 Diguanylate cyclase, GGDEF domain KAF59_02585 PF00563 EAL domain KAF59_02585 PF01590 GAF domain KAF59_02590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_02590 PF00512 His Kinase A (phospho-acceptor) domain KAF59_02590 PF18415 Histidine kinase receptor ArcB trans-membrane domain KAF59_02590 PF01627 Hpt domain KAF59_02590 PF00989 PAS fold KAF59_02590 PF00072 Response regulator receiver domain KAF59_02595 PF00072 Response regulator receiver domain KAF59_02595 PF00486 Transcriptional regulatory protein, C terminal KAF59_02605 PF03737 Aldolase/RraA KAF59_02620 PF00742 Homoserine dehydrogenase KAF59_02620 PF03447 Homoserine dehydrogenase, NAD binding domain KAF59_02620 PF00696 Amino acid kinase family KAF59_02620 PF13840 ACT domain KAF59_02620 PF01842 ACT domain KAF59_02625 PF08544 GHMP kinases C terminal KAF59_02625 PF00288 GHMP kinases N terminal domain KAF59_02630 PF00291 Pyridoxal-phosphate dependent enzyme KAF59_02630 PF14821 Threonine synthase N terminus KAF59_02635 PF01228 Glycine radical KAF59_02640 PF01261 Xylose isomerase-like TIM barrel KAF59_02645 PF03167 Uracil DNA glycosylase superfamily KAF59_02660 PF01235 Sodium:alanine symporter family KAF59_02665 PF03883 Peroxide stress protein YaaA KAF59_02675 PF01026 TatD related DNase KAF59_02680 PF01773 Na+ dependent nucleoside transporter N-terminus KAF59_02680 PF07670 Nucleoside recognition KAF59_02680 PF07662 Na+ dependent nucleoside transporter C-terminus KAF59_02690 PF01791 DeoC/LacD family aldolase KAF59_02695 PF02885 Glycosyl transferase family, helical bundle domain KAF59_02695 PF00591 Glycosyl transferase family, a/b domain KAF59_02695 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KAF59_02700 PF01676 Metalloenzyme superfamily KAF59_02705 PF01048 Phosphorylase superfamily KAF59_02715 PF18429 Domain of unknown function (DUF5609) KAF59_02725 PF18073 Rubredoxin metal binding domain KAF59_02730 PF00009 Elongation factor Tu GTP binding domain KAF59_02730 PF00679 Elongation factor G C-terminus KAF59_02730 PF14492 Elongation Factor G, domain II KAF59_02730 PF03764 Elongation factor G, domain IV KAF59_02730 PF03144 Elongation factor Tu domain 2 KAF59_02735 PF00501 AMP-binding enzyme KAF59_02740 PF00072 Response regulator receiver domain KAF59_02750 PF02837 Glycosyl hydrolases family 2, sugar binding domain KAF59_02750 PF00703 Glycosyl hydrolases family 2 KAF59_02750 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KAF59_02750 PF16353 Domain of unknown function(DUF4981) KAF59_02750 PF02929 Beta galactosidase small chain KAF59_02755 PF00356 Bacterial regulatory proteins, lacI family KAF59_02760 PF01588 Putative tRNA binding domain KAF59_02770 PF01544 CorA-like Mg2+ transporter protein KAF59_02775 PF18030 RimK PreATP-grasp domain KAF59_02775 PF02080 TrkA-C domain KAF59_02775 PF08443 RimK-like ATP-grasp domain KAF59_02780 PF00583 Acetyltransferase (GNAT) family KAF59_02790 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle KAF59_02790 PF14602 Hexapeptide repeat of succinyl-transferase KAF59_02795 PF07130 YebG protein KAF59_02810 PF17946 RecC C-terminal domain KAF59_02815 PF13361 UvrD-like helicase C-terminal domain KAF59_02815 PF00580 UvrD/REP helicase N-terminal domain KAF59_02815 PF12705 PD-(D/E)XK nuclease superfamily KAF59_02820 PF13538 UvrD-like helicase C-terminal domain KAF59_02830 PF00583 Acetyltransferase (GNAT) family KAF59_02830 PF00696 Amino acid kinase family KAF59_02840 PF06725 3D domain KAF59_02840 PF03562 MltA specific insert domain KAF59_02845 PF00899 ThiF family KAF59_02850 PF02657 Fe-S metabolism associated domain KAF59_02855 PF00266 Aminotransferase class-V KAF59_02860 PF01965 DJ-1/PfpI family KAF59_02865 PF02558 Ketopantoate reductase PanE/ApbA KAF59_02865 PF08546 Ketopantoate reductase PanE/ApbA C terminal KAF59_02870 PF03502 Nucleoside-specific channel-forming protein, Tsx KAF59_02880 PF04545 Sigma-70, region 4 KAF59_02880 PF04542 Sigma-70 region 2 KAF59_02890 PF07690 Major Facilitator Superfamily KAF59_02895 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KAF59_02905 PF05175 Methyltransferase small domain KAF59_02910 PF01722 BolA-like protein KAF59_02915 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) KAF59_02915 PF11973 NQRA C-terminal domain KAF59_02920 PF03116 NQR2, RnfD, RnfE family KAF59_02925 PF04205 FMN-binding domain KAF59_02930 PF02508 Rnf-Nqr subunit, membrane protein KAF59_02935 PF02508 Rnf-Nqr subunit, membrane protein KAF59_02940 PF00111 2Fe-2S iron-sulfur cluster binding domain KAF59_02940 PF00175 Oxidoreductase NAD-binding domain KAF59_02940 PF00970 Oxidoreductase FAD-binding domain KAF59_02945 PF02424 ApbE family KAF59_02955 PF00817 impB/mucB/samB family KAF59_02955 PF11798 IMS family HHH motif KAF59_02970 PF00209 Sodium:neurotransmitter symporter family KAF59_02980 PF18030 RimK PreATP-grasp domain KAF59_02980 PF08443 RimK-like ATP-grasp domain KAF59_02985 PF08443 RimK-like ATP-grasp domain KAF59_02985 PF18030 RimK PreATP-grasp domain KAF59_02990 PF01546 Peptidase family M20/M25/M40 KAF59_02990 PF07687 Peptidase dimerisation domain KAF59_02995 PF00860 Permease family KAF59_03000 PF00156 Phosphoribosyl transferase domain KAF59_03005 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) KAF59_03010 PF07417 Sigma factor-binding transcriptional regulator Crl KAF59_03015 PF00696 Amino acid kinase family KAF59_03015 PF01472 PUA domain KAF59_03020 PF00171 Aldehyde dehydrogenase family KAF59_03025 PF03477 ATP cone domain KAF59_03030 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KAF59_03030 PF01872 RibD C-terminal domain KAF59_03035 PF00677 Lumazine binding domain KAF59_03040 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KAF59_03040 PF00925 GTP cyclohydrolase II KAF59_03045 PF00885 6,7-dimethyl-8-ribityllumazine synthase KAF59_03050 PF01029 NusB family KAF59_03055 PF00586 AIR synthase related protein, N-terminal domain KAF59_03055 PF02769 AIR synthase related protein, C-terminal domain KAF59_03060 PF04608 Phosphatidylglycerophosphatase A KAF59_03065 PF11944 Protein of unknown function (DUF3461) KAF59_03070 PF08335 GlnD PII-uridylyltransferase KAF59_03070 PF01966 HD domain KAF59_03070 PF01909 Nucleotidyltransferase domain KAF59_03075 PF00557 Metallopeptidase family M24 KAF59_03080 PF00318 Ribosomal protein S2 KAF59_03085 PF00889 Elongation factor TS KAF59_03090 PF00696 Amino acid kinase family KAF59_03095 PF01765 Ribosome recycling factor KAF59_03100 PF01255 Putative undecaprenyl diphosphate synthase KAF59_03110 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KAF59_03110 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KAF59_03110 PF13288 DXP reductoisomerase C-terminal domain KAF59_03115 PF17820 PDZ domain KAF59_03115 PF02163 Peptidase family M50 KAF59_03120 PF07244 Surface antigen variable number repeat KAF59_03120 PF01103 Surface antigen KAF59_03125 PF03938 Outer membrane protein (OmpH-like) KAF59_03130 PF00132 Bacterial transferase hexapeptide (six repeats) KAF59_03130 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KAF59_03135 PF07977 FabA-like domain KAF59_03140 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KAF59_03140 PF00132 Bacterial transferase hexapeptide (six repeats) KAF59_03145 PF02684 Lipid-A-disaccharide synthetase KAF59_03150 PF01351 Ribonuclease HII KAF59_03155 PF01336 OB-fold nucleic acid binding domain KAF59_03155 PF02811 PHP domain KAF59_03155 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KAF59_03155 PF07733 Bacterial DNA polymerase III alpha NTPase domain KAF59_03155 PF14579 Helix-hairpin-helix motif KAF59_03160 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KAF59_03165 PF11734 TilS substrate C-terminal domain KAF59_03165 PF01171 PP-loop family KAF59_03165 PF09179 TilS substrate binding domain KAF59_03170 PF00034 Cytochrome c KAF59_03175 PF05870 Phenolic acid decarboxylase (PAD) KAF59_03180 PF00543 Nitrogen regulatory protein P-II KAF59_03185 PF03372 Endonuclease/Exonuclease/phosphatase family KAF59_03190 PF01476 LysM domain KAF59_03190 PF01464 Transglycosylase SLT domain KAF59_03195 PF16123 Hydroxyacylglutathione hydrolase C-terminus KAF59_03195 PF00753 Metallo-beta-lactamase superfamily KAF59_03200 PF08241 Methyltransferase domain KAF59_03205 PF00075 RNase H KAF59_03210 PF00929 Exonuclease KAF59_03220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KAF59_03220 PF02770 Acyl-CoA dehydrogenase, middle domain KAF59_03220 PF09317 Domain of unknown function (DUF1974) KAF59_03220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KAF59_03225 PF13580 SIS domain KAF59_03230 PF13230 Glutamine amidotransferases class-II KAF59_03235 PF00551 Formyl transferase KAF59_03240 PF02769 AIR synthase related protein, C-terminal domain KAF59_03240 PF00586 AIR synthase related protein, N-terminal domain KAF59_03250 PF00990 Diguanylate cyclase, GGDEF domain KAF59_03255 PF00849 RNA pseudouridylate synthase KAF59_03255 PF01479 S4 domain KAF59_03260 PF01713 Smr domain KAF59_03275 PF01963 TraB family KAF59_03280 PF03173 Putative carbohydrate binding domain KAF59_03280 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain KAF59_03280 PF00728 Glycosyl hydrolase family 20, catalytic domain KAF59_03280 PF02838 Glycosyl hydrolase family 20, domain 2 KAF59_03290 PF00403 Heavy-metal-associated domain KAF59_03295 PF00749 tRNA synthetases class I (E and Q), catalytic domain KAF59_03300 PF00691 OmpA family KAF59_03300 PF01389 OmpA-like transmembrane domain KAF59_03310 PF07715 TonB-dependent Receptor Plug Domain KAF59_03315 PF08021 Siderophore-interacting FAD-binding domain KAF59_03315 PF04954 Siderophore-interacting protein KAF59_03320 PF00550 Phosphopantetheine attachment site KAF59_03320 PF00668 Condensation domain KAF59_03320 PF08242 Methyltransferase domain KAF59_03320 PF00501 AMP-binding enzyme KAF59_03355 PF01584 CheW-like domain KAF59_03355 PF00072 Response regulator receiver domain KAF59_03360 PF01739 CheR methyltransferase, SAM binding domain KAF59_03360 PF03705 CheR methyltransferase, all-alpha domain KAF59_03365 PF00460 Flagella basal body rod protein KAF59_03370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KAF59_03370 PF00460 Flagella basal body rod protein KAF59_03375 PF13860 FlgD Ig-like domain KAF59_03375 PF03963 Flagellar hook capping protein - N-terminal region KAF59_03375 PF13861 FlgD Tudor-like domain KAF59_03380 PF07559 Flagellar basal body protein FlaE KAF59_03380 PF00460 Flagella basal body rod protein KAF59_03380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KAF59_03385 PF00460 Flagella basal body rod protein KAF59_03385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KAF59_03390 PF00460 Flagella basal body rod protein KAF59_03390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KAF59_03395 PF02107 Flagellar L-ring protein KAF59_03400 PF02119 Flagellar P-ring protein KAF59_03405 PF10135 Rod binding protein KAF59_03405 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KAF59_03410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KAF59_03410 PF07196 Flagellin hook IN motif KAF59_03420 PF00700 Bacterial flagellin C-terminal helical region KAF59_03420 PF07196 Flagellin hook IN motif KAF59_03420 PF00669 Bacterial flagellin N-terminal helical region KAF59_03425 PF00700 Bacterial flagellin C-terminal helical region KAF59_03425 PF07196 Flagellin hook IN motif KAF59_03425 PF00669 Bacterial flagellin N-terminal helical region KAF59_03510 PF01926 50S ribosome-binding GTPase KAF59_03510 PF06071 Protein of unknown function (DUF933) KAF59_03515 PF01195 Peptidyl-tRNA hydrolase KAF59_03520 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KAF59_03520 PF14572 Phosphoribosyl synthetase-associated domain KAF59_03525 PF00288 GHMP kinases N terminal domain KAF59_03525 PF08544 GHMP kinases C terminal KAF59_03530 PF03550 Outer membrane lipoprotein LolB KAF59_03535 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KAF59_03535 PF01488 Shikimate / quinate 5-dehydrogenase KAF59_03535 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KAF59_03540 PF03462 PCRF domain KAF59_03540 PF00472 RF-1 domain KAF59_03545 PF13847 Methyltransferase domain KAF59_03545 PF17827 PrmC N-terminal domain KAF59_03550 PF04247 Invasion gene expression up-regulator, SirB KAF59_03555 PF13369 Transglutaminase-like superfamily KAF59_03560 PF00793 DAHP synthetase I family KAF59_03565 PF02872 5'-nucleotidase, C-terminal domain KAF59_03565 PF00149 Calcineurin-like phosphoesterase KAF59_03570 PF04073 Aminoacyl-tRNA editing domain KAF59_03575 PF00860 Permease family KAF59_03590 PF03358 NADPH-dependent FMN reductase KAF59_03595 PF03960 ArsC family KAF59_03600 PF13181 Tetratricopeptide repeat KAF59_03600 PF01435 Peptidase family M48 KAF59_03610 PF01594 AI-2E family transporter KAF59_03615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_03615 PF00672 HAMP domain KAF59_03615 PF02743 Cache domain KAF59_03620 PF00578 AhpC/TSA family KAF59_03630 PF00701 Dihydrodipicolinate synthetase family KAF59_03635 PF06804 NlpB/DapX lipoprotein KAF59_03645 PF02557 D-alanyl-D-alanine carboxypeptidase KAF59_03650 PF01546 Peptidase family M20/M25/M40 KAF59_03650 PF07687 Peptidase dimerisation domain KAF59_03655 PF03960 ArsC family KAF59_03670 PF11143 Protein of unknown function (DUF2919) KAF59_03675 PF04261 Dyp-type peroxidase family KAF59_03680 PF00700 Bacterial flagellin C-terminal helical region KAF59_03680 PF07196 Flagellin hook IN motif KAF59_03680 PF00669 Bacterial flagellin N-terminal helical region KAF59_03685 PF00700 Bacterial flagellin C-terminal helical region KAF59_03685 PF07196 Flagellin hook IN motif KAF59_03685 PF00669 Bacterial flagellin N-terminal helical region KAF59_03690 PF07196 Flagellin hook IN motif KAF59_03690 PF00700 Bacterial flagellin C-terminal helical region KAF59_03690 PF00669 Bacterial flagellin N-terminal helical region KAF59_03695 PF03646 FlaG protein KAF59_03700 PF07196 Flagellin hook IN motif KAF59_03700 PF07195 Flagellar hook-associated protein 2 C-terminus KAF59_03700 PF02465 Flagellar hook-associated protein 2 N-terminus KAF59_03710 PF02561 Flagellar protein FliS KAF59_03715 PF00158 Sigma-54 interaction domain KAF59_03715 PF02954 Bacterial regulatory protein, Fis family KAF59_03715 PF06490 Flagellar regulatory protein FleQ KAF59_03720 PF00512 His Kinase A (phospho-acceptor) domain KAF59_03720 PF13188 PAS domain KAF59_03720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_03725 PF02954 Bacterial regulatory protein, Fis family KAF59_03725 PF00158 Sigma-54 interaction domain KAF59_03725 PF00072 Response regulator receiver domain KAF59_03730 PF02049 Flagellar hook-basal body complex protein FliE KAF59_03735 PF08345 Flagellar M-ring protein C-terminal KAF59_03735 PF01514 Secretory protein of YscJ/FliF family KAF59_03740 PF14842 FliG N-terminal domain KAF59_03740 PF01706 FliG C-terminal domain KAF59_03740 PF14841 FliG middle domain KAF59_03745 PF02108 Flagellar assembly protein FliH KAF59_03750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KAF59_03750 PF18269 T3SS EscN ATPase C-terminal domain KAF59_03770 PF03748 Flagellar basal body-associated protein FliL KAF59_03775 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KAF59_03775 PF02154 Flagellar motor switch protein FliM KAF59_03780 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KAF59_03785 PF04347 Flagellar biosynthesis protein, FliO KAF59_03790 PF00813 FliP family KAF59_03795 PF01313 Bacterial export proteins, family 3 KAF59_03800 PF01311 Bacterial export proteins, family 1 KAF59_03805 PF01312 FlhB HrpN YscU SpaS Family KAF59_03810 PF01713 Smr domain KAF59_03815 PF05175 Methyltransferase small domain KAF59_03820 PF01264 Chorismate synthase KAF59_03825 PF03458 UPF0126 domain KAF59_03830 PF04315 Elongation factor P hydroxylase KAF59_03835 PF08891 YfcL protein KAF59_03840 PF03358 NADPH-dependent FMN reductase KAF59_03845 PF01266 FAD dependent oxidoreductase KAF59_03845 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KAF59_03850 PF00109 Beta-ketoacyl synthase, N-terminal domain KAF59_03850 PF02801 Beta-ketoacyl synthase, C-terminal domain KAF59_03855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KAF59_03855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KAF59_03855 PF11890 Domain of unknown function (DUF3410) KAF59_03860 PF01118 Semialdehyde dehydrogenase, NAD binding domain KAF59_03860 PF02774 Semialdehyde dehydrogenase, dimerisation domain KAF59_03865 PF01475 Ferric uptake regulator family KAF59_03875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_03875 PF03466 LysR substrate binding domain KAF59_03880 PF03788 LrgA family KAF59_03885 PF04172 LrgB-like family KAF59_03890 PF00258 Flavodoxin KAF59_03900 PF12697 Alpha/beta hydrolase family KAF59_03905 PF03925 SeqA protein C-terminal domain KAF59_03905 PF17206 SeqA protein N-terminal domain KAF59_03910 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KAF59_03910 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KAF59_03910 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KAF59_03910 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KAF59_03920 PF01784 NIF3 (NGG1p interacting factor 3) KAF59_03925 PF00285 Citrate synthase, C-terminal domain KAF59_03930 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KAF59_03935 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KAF59_03940 PF00890 FAD binding domain KAF59_03940 PF02910 Fumarate reductase flavoprotein C-term KAF59_03945 PF13085 2Fe-2S iron-sulfur cluster binding domain KAF59_03950 PF16078 2-oxoglutarate dehydrogenase N-terminus KAF59_03950 PF00676 Dehydrogenase E1 component KAF59_03950 PF16870 2-oxoglutarate dehydrogenase C-terminal KAF59_03950 PF02779 Transketolase, pyrimidine binding domain KAF59_03955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KAF59_03955 PF02817 e3 binding domain KAF59_03955 PF00364 Biotin-requiring enzyme KAF59_03960 PF08442 ATP-grasp domain KAF59_03960 PF00549 CoA-ligase KAF59_03965 PF02629 CoA binding domain KAF59_03965 PF00549 CoA-ligase KAF59_03970 PF00950 ABC 3 transport family KAF59_03975 PF00005 ABC transporter KAF59_03980 PF01297 Zinc-uptake complex component A periplasmic KAF59_03985 PF12833 Helix-turn-helix domain KAF59_03985 PF02311 AraC-like ligand binding domain KAF59_03990 PF04023 FeoA domain KAF59_03995 PF07664 Ferrous iron transport protein B C terminus KAF59_03995 PF02421 Ferrous iron transport protein B KAF59_03995 PF07670 Nucleoside recognition KAF59_04010 PF03485 Arginyl tRNA synthetase N terminal domain KAF59_04010 PF05746 DALR anticodon binding domain KAF59_04010 PF00750 tRNA synthetases class I (R) KAF59_04020 PF00675 Insulinase (Peptidase family M16) KAF59_04020 PF05193 Peptidase M16 inactive domain KAF59_04025 PF00300 Histidine phosphatase superfamily (branch 1) KAF59_04030 PF00771 FHIPEP family KAF59_04035 PF00448 SRP54-type protein, GTPase domain KAF59_04040 PF10609 NUBPL iron-transfer P-loop NTPase KAF59_04045 PF04545 Sigma-70, region 4 KAF59_04045 PF04539 Sigma-70 region 3 KAF59_04045 PF04542 Sigma-70 region 2 KAF59_04050 PF00072 Response regulator receiver domain KAF59_04055 PF04344 Chemotaxis phosphatase, CheZ KAF59_04060 PF01584 CheW-like domain KAF59_04060 PF02895 Signal transducing histidine kinase, homodimeric domain KAF59_04060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_04060 PF01627 Hpt domain KAF59_04060 PF00072 Response regulator receiver domain KAF59_04065 PF01339 CheB methylesterase KAF59_04065 PF00072 Response regulator receiver domain KAF59_04070 PF13614 AAA domain KAF59_04080 PF01584 CheW-like domain KAF59_04090 PF00005 ABC transporter KAF59_04095 PF03379 CcmB protein KAF59_04100 PF01578 Cytochrome C assembly protein KAF59_04105 PF04995 Heme exporter protein D (CcmD) KAF59_04110 PF03100 CcmE KAF59_04115 PF01578 Cytochrome C assembly protein KAF59_04115 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal KAF59_04120 PF08534 Redoxin KAF59_04125 PF03918 Cytochrome C biogenesis protein KAF59_04135 PF04333 MlaA lipoprotein KAF59_04150 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KAF59_04150 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KAF59_04155 PF00462 Glutaredoxin KAF59_04160 PF01131 DNA topoisomerase KAF59_04160 PF01751 Toprim domain KAF59_04165 PF00850 Histone deacetylase domain KAF59_04180 PF11893 Domain of unknown function (DUF3413) KAF59_04180 PF00884 Sulfatase KAF59_04185 PF07208 Protein of unknown function (DUF1414) KAF59_04190 PF04245 37-kD nucleoid-associated bacterial protein KAF59_04200 PF03553 Na+/H+ antiporter family KAF59_04205 PF01118 Semialdehyde dehydrogenase, NAD binding domain KAF59_04205 PF02774 Semialdehyde dehydrogenase, dimerisation domain KAF59_04210 PF01914 MarC family integral membrane protein KAF59_04215 PF00465 Iron-containing alcohol dehydrogenase KAF59_04215 PF00171 Aldehyde dehydrogenase family KAF59_04225 PF01740 STAS domain KAF59_04225 PF00916 Sulfate permease family KAF59_04230 PF00575 S1 RNA binding domain KAF59_04230 PF12111 Polyribonucleotide phosphorylase C terminal KAF59_04230 PF10150 Ribonuclease E/G family KAF59_04235 PF00849 RNA pseudouridylate synthase KAF59_04235 PF01479 S4 domain KAF59_04240 PF02545 Maf-like protein KAF59_04245 PF02620 Large ribosomal RNA subunit accumulation protein YceD KAF59_04250 PF01783 Ribosomal L32p protein family KAF59_04255 PF02504 Fatty acid synthesis protein KAF59_04260 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KAF59_04260 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KAF59_04265 PF00698 Acyl transferase domain KAF59_04275 PF00550 Phosphopantetheine attachment site KAF59_04280 PF00109 Beta-ketoacyl synthase, N-terminal domain KAF59_04280 PF02801 Beta-ketoacyl synthase, C-terminal domain KAF59_04285 PF01063 Amino-transferase class IV KAF59_04290 PF02618 YceG-like family KAF59_04295 PF02223 Thymidylate kinase KAF59_04300 PF09115 DNA polymerase III, delta subunit, C terminal KAF59_04305 PF01026 TatD related DNase KAF59_04310 PF02378 Phosphotransferase system, EIIC KAF59_04310 PF00367 phosphotransferase system, EIIB KAF59_04320 PF00209 Sodium:neurotransmitter symporter family KAF59_04335 PF01734 Patatin-like phospholipase KAF59_04340 PF02887 Pyruvate kinase, alpha/beta domain KAF59_04340 PF00224 Pyruvate kinase, barrel domain KAF59_04345 PF00480 ROK family KAF59_04350 PF00072 Response regulator receiver domain KAF59_04350 PF01584 CheW-like domain KAF59_04365 PF13847 Methyltransferase domain KAF59_04375 PF01263 Aldose 1-epimerase KAF59_04380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KAF59_04380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KAF59_04385 PF01641 SelR domain KAF59_04395 PF07023 Protein of unknown function (DUF1315) KAF59_04400 PF17763 Glutaminase/Asparaginase C-terminal domain KAF59_04400 PF00710 Asparaginase, N-terminal KAF59_04405 PF01343 Peptidase family S49 KAF59_04410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KAF59_04410 PF07992 Pyridine nucleotide-disulphide oxidoreductase KAF59_04415 PF01842 ACT domain KAF59_04415 PF00551 Formyl transferase KAF59_04425 PF13307 Helicase C-terminal domain KAF59_04425 PF04851 Type III restriction enzyme, res subunit KAF59_04430 PF00814 Glycoprotease family KAF59_04445 PF00561 alpha/beta hydrolase fold KAF59_04450 PF00501 AMP-binding enzyme KAF59_04450 PF13193 AMP-binding enzyme C-terminal domain KAF59_04455 PF00570 HRDC domain KAF59_04455 PF01612 3'-5' exonuclease KAF59_04475 PF13286 Phosphohydrolase-associated domain KAF59_04475 PF01966 HD domain KAF59_04485 PF00155 Aminotransferase class I and II KAF59_04490 PF00425 chorismate binding enzyme KAF59_04495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KAF59_04495 PF16582 Middle domain of thiamine pyrophosphate KAF59_04495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KAF59_04500 PF12697 Alpha/beta hydrolase family KAF59_04505 PF00378 Enoyl-CoA hydratase/isomerase KAF59_04510 PF13378 Enolase C-terminal domain-like KAF59_04515 PF00501 AMP-binding enzyme KAF59_04515 PF13193 AMP-binding enzyme C-terminal domain KAF59_04520 PF03594 Benzoate membrane transport protein KAF59_04525 PF07883 Cupin domain KAF59_04525 PF01381 Helix-turn-helix KAF59_04530 PF00672 HAMP domain KAF59_04530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_04530 PF12729 Four helix bundle sensory module for signal transduction KAF59_04545 PF07690 Major Facilitator Superfamily KAF59_04565 PF04170 NlpE N-terminal domain KAF59_04570 PF03776 Septum formation topological specificity factor MinE KAF59_04575 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KAF59_04580 PF03775 Septum formation inhibitor MinC, C-terminal domain KAF59_04580 PF05209 Septum formation inhibitor MinC, N-terminal domain KAF59_04585 PF05166 YcgL domain KAF59_04590 PF13406 Transglycosylase SLT domain KAF59_04595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_04595 PF03466 LysR substrate binding domain KAF59_04600 PF07662 Na+ dependent nucleoside transporter C-terminus KAF59_04600 PF01773 Na+ dependent nucleoside transporter N-terminus KAF59_04600 PF07670 Nucleoside recognition KAF59_04605 PF00704 Glycosyl hydrolases family 18 KAF59_04610 PF03264 NapC/NirT cytochrome c family, N-terminal region KAF59_04615 PF18364 Molybdopterin oxidoreductase N-terminal domain KAF59_04615 PF01568 Molydopterin dinucleotide binding domain KAF59_04615 PF00384 Molybdopterin oxidoreductase KAF59_04625 PF03466 LysR substrate binding domain KAF59_04625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_04630 PF01494 FAD binding domain KAF59_04635 PF02668 Taurine catabolism dioxygenase TauD, TfdA family KAF59_04640 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KAF59_04640 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KAF59_04685 PF00990 Diguanylate cyclase, GGDEF domain KAF59_04685 PF00563 EAL domain KAF59_04685 PF03707 Bacterial signalling protein N terminal repeat KAF59_04685 PF13188 PAS domain KAF59_04695 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KAF59_04700 PF03480 Bacterial extracellular solute-binding protein, family 7 KAF59_04705 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KAF59_04710 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KAF59_04715 PF00072 Response regulator receiver domain KAF59_04715 PF00158 Sigma-54 interaction domain KAF59_04715 PF02954 Bacterial regulatory protein, Fis family KAF59_04720 PF02743 Cache domain KAF59_04720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_04720 PF00512 His Kinase A (phospho-acceptor) domain KAF59_04730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KAF59_04730 PF05698 Bacterial trigger factor protein (TF) C-terminus KAF59_04730 PF05697 Bacterial trigger factor protein (TF) KAF59_04735 PF00574 Clp protease KAF59_04740 PF06689 ClpX C4-type zinc finger KAF59_04740 PF07724 AAA domain (Cdc48 subfamily) KAF59_04740 PF10431 C-terminal, D2-small domain, of ClpB protein KAF59_04745 PF00004 ATPase family associated with various cellular activities (AAA) KAF59_04745 PF05362 Lon protease (S16) C-terminal proteolytic domain KAF59_04745 PF02190 ATP-dependent protease La (LON) substrate-binding domain KAF59_04750 PF00216 Bacterial DNA-binding protein KAF59_04755 PF13145 PPIC-type PPIASE domain KAF59_04765 PF02224 Cytidylate kinase KAF59_04770 PF00575 S1 RNA binding domain KAF59_04775 PF00216 Bacterial DNA-binding protein KAF59_04780 PF06305 Lipopolysaccharide assembly protein A domain KAF59_04785 PF18073 Rubredoxin metal binding domain KAF59_04790 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KAF59_04795 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KAF59_04805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_04805 PF03466 LysR substrate binding domain KAF59_04815 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KAF59_04815 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KAF59_04820 PF01037 Lrp/AsnC ligand binding domain KAF59_04825 PF17854 FtsK alpha domain KAF59_04825 PF09397 Ftsk gamma domain KAF59_04825 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KAF59_04825 PF01580 FtsK/SpoIIIE family KAF59_04830 PF02600 Disulfide bond formation protein DsbB KAF59_04835 PF06450 Bacterial Na+/H+ antiporter B (NhaB) KAF59_04840 PF07840 FadR C-terminal domain KAF59_04840 PF00392 Bacterial regulatory proteins, gntR family KAF59_04850 PF00672 HAMP domain KAF59_04850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_04855 PF01230 HIT domain KAF59_04870 PF08139 Prokaryotic membrane lipoprotein lipid attachment site KAF59_04870 PF13036 Peptidoglycan-synthase activator LpoB KAF59_04880 PF05728 Uncharacterised protein family (UPF0227) KAF59_04885 PF07992 Pyridine nucleotide-disulphide oxidoreductase KAF59_04895 PF07968 Leukocidin/Hemolysin toxin family KAF59_04895 PF12563 Hemolytic toxin N terminal KAF59_04895 PF16458 Beta-prism lectin KAF59_04905 PF02559 CarD-like/TRCF domain KAF59_04905 PF03461 TRCF domain KAF59_04905 PF17757 UvrB interaction domain KAF59_04905 PF00270 DEAD/DEAH box helicase KAF59_04905 PF00271 Helicase conserved C-terminal domain KAF59_04915 PF12704 MacB-like periplasmic core domain KAF59_04915 PF02687 FtsX-like permease family KAF59_04920 PF00005 ABC transporter KAF59_04925 PF12704 MacB-like periplasmic core domain KAF59_04925 PF02687 FtsX-like permease family KAF59_04935 PF03772 Competence protein KAF59_04935 PF13567 Domain of unknown function (DUF4131) KAF59_04935 PF00753 Metallo-beta-lactamase superfamily KAF59_04940 PF00664 ABC transporter transmembrane region KAF59_04940 PF00005 ABC transporter KAF59_04945 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KAF59_04950 PF03966 Trm112p-like protein KAF59_04955 PF02348 Cytidylyltransferase KAF59_04960 PF04293 SpoVR like protein KAF59_04965 PF04285 Protein of unknown function (DUF444) KAF59_04970 PF08298 PrkA AAA domain KAF59_04970 PF06798 PrkA serine protein kinase C-terminal domain KAF59_04975 PF03887 YfbU domain KAF59_04985 PF04055 Radical SAM superfamily KAF59_04990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_04990 PF02743 Cache domain KAF59_04990 PF00672 HAMP domain KAF59_05000 PF01228 Glycine radical KAF59_05000 PF02901 Pyruvate formate lyase-like KAF59_05010 PF00005 ABC transporter KAF59_05015 PF00497 Bacterial extracellular solute-binding proteins, family 3 KAF59_05020 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_05025 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_05030 PF03372 Endonuclease/Exonuclease/phosphatase family KAF59_05035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_05035 PF00672 HAMP domain KAF59_05040 PF10689 Protein of unknown function (DUF2496) KAF59_05045 PF07445 Primosomal replication protein priC KAF59_05050 PF01925 Sulfite exporter TauE/SafE KAF59_05055 PF13307 Helicase C-terminal domain KAF59_05055 PF06733 DEAD_2 KAF59_05060 PF13609 Gram-negative porin KAF59_05065 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KAF59_05070 PF02810 SEC-C motif KAF59_05075 PF00563 EAL domain KAF59_05075 PF08668 HDOD domain KAF59_05080 PF00149 Calcineurin-like phosphoesterase KAF59_05085 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KAF59_05090 PF09190 DALR domain KAF59_05090 PF01406 tRNA synthetases class I (C) catalytic domain KAF59_05095 PF02075 Crossover junction endodeoxyribonuclease RuvC KAF59_05100 PF07499 RuvA, C-terminal domain KAF59_05100 PF01330 RuvA N terminal domain KAF59_05105 PF17864 RuvB AAA lid domain KAF59_05105 PF05491 RuvB C-terminal winged helix domain KAF59_05105 PF05496 Holliday junction DNA helicase RuvB P-loop domain KAF59_05110 PF01654 Cytochrome bd terminal oxidase subunit I KAF59_05115 PF02322 Cytochrome bd terminal oxidase subunit II KAF59_05120 PF08173 Membrane bound YbgT-like protein KAF59_05125 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) KAF59_05130 PF03061 Thioesterase superfamily KAF59_05135 PF01618 MotA/TolQ/ExbB proton channel family KAF59_05140 PF02472 Biopolymer transport protein ExbD/TolR KAF59_05150 PF07676 WD40-like Beta Propeller Repeat KAF59_05150 PF04052 TolB amino-terminal domain KAF59_05155 PF00691 OmpA family KAF59_05165 PF02445 Quinolinate synthetase A protein KAF59_05175 PF00512 His Kinase A (phospho-acceptor) domain KAF59_05175 PF09308 LuxQ, periplasmic KAF59_05175 PF00072 Response regulator receiver domain KAF59_05175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_05180 PF06610 L-alanine exporter KAF59_05185 PF01238 Phosphomannose isomerase type I KAF59_05190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KAF59_05190 PF02378 Phosphotransferase system, EIIC KAF59_05190 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KAF59_05195 PF12833 Helix-turn-helix domain KAF59_05205 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KAF59_05225 PF00171 Aldehyde dehydrogenase family KAF59_05230 PF01590 GAF domain KAF59_05230 PF00158 Sigma-54 interaction domain KAF59_05230 PF02954 Bacterial regulatory protein, Fis family KAF59_05235 PF09905 DNA-binding protein VF530 KAF59_05245 PF03441 FAD binding domain of DNA photolyase KAF59_05245 PF00875 DNA photolyase KAF59_05325 PF00005 ABC transporter KAF59_05380 PF13356 Arm DNA-binding domain KAF59_05380 PF00589 Phage integrase family KAF59_05385 PF13356 Arm DNA-binding domain KAF59_05385 PF00589 Phage integrase family KAF59_05395 PF00873 AcrB/AcrD/AcrF family KAF59_05400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KAF59_05410 PF02470 MlaD protein KAF59_05420 PF00924 Mechanosensitive ion channel KAF59_05420 PF05552 Conserved TM helix KAF59_05440 PF08362 YcdC-like protein, C-terminal region KAF59_05440 PF00440 Bacterial regulatory proteins, tetR family KAF59_05445 PF00171 Aldehyde dehydrogenase family KAF59_05450 PF07383 Protein of unknown function (DUF1496) KAF59_05465 PF16295 Tetracyclin repressor-like, C-terminal domain KAF59_05465 PF00440 Bacterial regulatory proteins, tetR family KAF59_05470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KAF59_05470 PF09317 Domain of unknown function (DUF1974) KAF59_05470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KAF59_05470 PF02770 Acyl-CoA dehydrogenase, middle domain KAF59_05475 PF07055 Enoyl reductase FAD binding domain KAF59_05475 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase KAF59_05475 PF12241 Trans-2-enoyl-CoA reductase catalytic region KAF59_05480 PF01176 Translation initiation factor 1A / IF-1 KAF59_05485 PF04377 Arginine-tRNA-protein transferase, C terminus KAF59_05485 PF04376 Arginine-tRNA-protein transferase, N terminus KAF59_05490 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KAF59_05495 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KAF59_05500 PF10692 Protein of unknown function (DUF2498) KAF59_05505 PF01396 Topoisomerase DNA binding C4 zinc finger KAF59_05505 PF01751 Toprim domain KAF59_05505 PF08272 Topoisomerase I zinc-ribbon-like KAF59_05505 PF01131 DNA topoisomerase KAF59_05510 PF00483 Nucleotidyl transferase KAF59_05515 PF00534 Glycosyl transferases group 1 KAF59_05515 PF08323 Starch synthase catalytic domain KAF59_05535 PF04994 TfoX C-terminal domain KAF59_05535 PF04993 TfoX N-terminal domain KAF59_05540 PF00356 Bacterial regulatory proteins, lacI family KAF59_05545 PF02613 Nitrate reductase delta subunit KAF59_05550 PF00072 Response regulator receiver domain KAF59_05550 PF00486 Transcriptional regulatory protein, C terminal KAF59_05555 PF02698 DUF218 domain KAF59_05560 PF13847 Methyltransferase domain KAF59_05565 PF03882 MukF winged-helix domain KAF59_05565 PF17193 MukF C-terminal domain KAF59_05565 PF17192 MukF middle domain KAF59_05570 PF04288 MukE-like family KAF59_05575 PF04310 MukB N-terminal KAF59_05575 PF16330 MukB hinge domain KAF59_05580 PF01037 Lrp/AsnC ligand binding domain KAF59_05585 PF01810 LysE type translocator KAF59_05590 PF04055 Radical SAM superfamily KAF59_05590 PF08497 Radical SAM N-terminal KAF59_05590 PF11842 Domain of unknown function (DUF3362) KAF59_05595 PF00563 EAL domain KAF59_05595 PF00990 Diguanylate cyclase, GGDEF domain KAF59_05595 PF08447 PAS fold KAF59_05595 PF08448 PAS fold KAF59_05600 PF00675 Insulinase (Peptidase family M16) KAF59_05600 PF05193 Peptidase M16 inactive domain KAF59_05615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_05615 PF03466 LysR substrate binding domain KAF59_05620 PF08267 Cobalamin-independent synthase, N-terminal domain KAF59_05620 PF01717 Cobalamin-independent synthase, Catalytic domain KAF59_05630 PF03795 YCII-related domain KAF59_05635 PF03061 Thioesterase superfamily KAF59_05640 PF04279 Intracellular septation protein A KAF59_05650 PF02698 DUF218 domain KAF59_05655 PF01370 NAD dependent epimerase/dehydratase family KAF59_05665 PF01226 Formate/nitrite transporter KAF59_05675 PF06796 Periplasmic nitrate reductase protein NapE KAF59_05680 PF03264 NapC/NirT cytochrome c family, N-terminal region KAF59_05685 PF18364 Molybdopterin oxidoreductase N-terminal domain KAF59_05685 PF01568 Molydopterin dinucleotide binding domain KAF59_05685 PF00384 Molybdopterin oxidoreductase KAF59_05705 PF01368 DHH family KAF59_05705 PF02833 DHHA2 domain KAF59_05720 PF00005 ABC transporter KAF59_05725 PF00005 ABC transporter KAF59_05725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KAF59_05730 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_05730 PF12911 N-terminal TM domain of oligopeptide transport permease C KAF59_05735 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_05740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KAF59_05745 PF02954 Bacterial regulatory protein, Fis family KAF59_05745 PF00158 Sigma-54 interaction domain KAF59_05750 PF04012 PspA/IM30 family KAF59_05765 PF00529 HlyD membrane-fusion protein of T1SS KAF59_05765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KAF59_05770 PF13533 Biotin-lipoyl like KAF59_05775 PF00873 AcrB/AcrD/AcrF family KAF59_05780 PF03352 Methyladenine glycosylase KAF59_05785 PF01053 Cys/Met metabolism PLP-dependent enzyme KAF59_05790 PF13091 PLD-like domain KAF59_05790 PF13396 Phospholipase_D-nuclease N-terminal KAF59_05795 PF00209 Sodium:neurotransmitter symporter family KAF59_05800 PF00849 RNA pseudouridylate synthase KAF59_05805 PF01066 CDP-alcohol phosphatidyltransferase KAF59_05810 PF00005 ABC transporter KAF59_05815 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_05820 PF13416 Bacterial extracellular solute-binding protein KAF59_05830 PF06945 Protein of unknown function (DUF1289) KAF59_05845 PF00005 ABC transporter KAF59_05850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KAF59_05855 PF03222 Tryptophan/tyrosine permease family KAF59_05865 PF00571 CBS domain KAF59_05865 PF01769 Divalent cation transporter KAF59_05865 PF03448 MgtE intracellular N domain KAF59_05870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_05870 PF00512 His Kinase A (phospho-acceptor) domain KAF59_05870 PF09308 LuxQ, periplasmic KAF59_05870 PF00072 Response regulator receiver domain KAF59_05875 PF03707 Bacterial signalling protein N terminal repeat KAF59_05875 PF00990 Diguanylate cyclase, GGDEF domain KAF59_05875 PF00563 EAL domain KAF59_05885 PF04151 Bacterial pre-peptidase C-terminal domain KAF59_05885 PF01752 Collagenase KAF59_05885 PF08453 Peptidase family M9 N-terminal KAF59_05895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KAF59_05895 PF12793 Sugar transport-related sRNA regulator N-term KAF59_05915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_05915 PF00672 HAMP domain KAF59_05915 PF12729 Four helix bundle sensory module for signal transduction KAF59_05925 PF00563 EAL domain KAF59_05925 PF01590 GAF domain KAF59_05925 PF00990 Diguanylate cyclase, GGDEF domain KAF59_05925 PF00360 Phytochrome region KAF59_05930 PF01386 Ribosomal L25p family KAF59_05935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_05940 PF00072 Response regulator receiver domain KAF59_05940 PF00486 Transcriptional regulatory protein, C terminal KAF59_05950 PF00271 Helicase conserved C-terminal domain KAF59_05950 PF04851 Type III restriction enzyme, res subunit KAF59_05955 PF01479 S4 domain KAF59_05955 PF00849 RNA pseudouridylate synthase KAF59_05960 PF07690 Major Facilitator Superfamily KAF59_05970 PF11066 Protein of unknown function (DUF2867) KAF59_05970 PF13460 NAD(P)H-binding KAF59_05975 PF01554 MatE KAF59_05980 PF00005 ABC transporter KAF59_05985 PF12704 MacB-like periplasmic core domain KAF59_05985 PF02687 FtsX-like permease family KAF59_05995 PF06965 Na+/H+ antiporter 1 KAF59_06000 PF00202 Aminotransferase class-III KAF59_06005 PF16653 Saccharopine dehydrogenase C-terminal domain KAF59_06005 PF03435 Saccharopine dehydrogenase NADP binding domain KAF59_06015 PF00691 OmpA family KAF59_06015 PF05736 OprF membrane domain KAF59_06020 PF02321 Outer membrane efflux protein KAF59_06040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_06040 PF03466 LysR substrate binding domain KAF59_06050 PF01863 Protein of unknown function DUF45 KAF59_06055 PF05971 RNA methyltransferase KAF59_06070 PF04204 Homoserine O-succinyltransferase KAF59_06090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KAF59_06105 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KAF59_06105 PF00989 PAS fold KAF59_06105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_06105 PF17203 Single cache domain 3 KAF59_06110 PF12431 Transcriptional regulator KAF59_06110 PF00072 Response regulator receiver domain KAF59_06120 PF00072 Response regulator receiver domain KAF59_06120 PF01584 CheW-like domain KAF59_06140 PF00072 Response regulator receiver domain KAF59_06140 PF00990 Diguanylate cyclase, GGDEF domain KAF59_06160 PF07690 Major Facilitator Superfamily KAF59_06165 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain KAF59_06165 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain KAF59_06170 PF00288 GHMP kinases N terminal domain KAF59_06170 PF10509 Galactokinase galactose-binding signature KAF59_06170 PF08544 GHMP kinases C terminal KAF59_06175 PF01263 Aldose 1-epimerase KAF59_06180 PF00990 Diguanylate cyclase, GGDEF domain KAF59_06185 PF00563 EAL domain KAF59_06185 PF17154 Gammaproteobacterial periplasmic sensor domain KAF59_06185 PF00672 HAMP domain KAF59_06185 PF00990 Diguanylate cyclase, GGDEF domain KAF59_06195 PF00205 Thiamine pyrophosphate enzyme, central domain KAF59_06195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KAF59_06195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KAF59_06200 PF03306 Alpha-acetolactate decarboxylase KAF59_06205 PF03466 LysR substrate binding domain KAF59_06205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_06215 PF00199 Catalase KAF59_06215 PF06628 Catalase-related immune-responsive KAF59_06225 PF00080 Copper/zinc superoxide dismutase (SODC) KAF59_06230 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) KAF59_06235 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KAF59_06235 PF00361 Proton-conducting membrane transporter KAF59_06240 PF03466 LysR substrate binding domain KAF59_06240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_06245 PF00501 AMP-binding enzyme KAF59_06245 PF13193 AMP-binding enzyme C-terminal domain KAF59_06260 PF04266 ASCH domain KAF59_06275 PF10415 Fumarase C C-terminus KAF59_06275 PF00206 Lyase KAF59_06285 PF01654 Cytochrome bd terminal oxidase subunit I KAF59_06290 PF02322 Cytochrome bd terminal oxidase subunit II KAF59_06295 PF00005 ABC transporter KAF59_06295 PF02687 FtsX-like permease family KAF59_06295 PF12704 MacB-like periplasmic core domain KAF59_06300 PF00005 ABC transporter KAF59_06300 PF02687 FtsX-like permease family KAF59_06300 PF12704 MacB-like periplasmic core domain KAF59_06305 PF00005 ABC transporter KAF59_06305 PF02687 FtsX-like permease family KAF59_06305 PF12704 MacB-like periplasmic core domain KAF59_06315 PF00529 HlyD membrane-fusion protein of T1SS KAF59_06325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_06325 PF03466 LysR substrate binding domain KAF59_06330 PF00141 Peroxidase KAF59_06335 PF00232 Glycosyl hydrolase family 1 KAF59_06340 PF00356 Bacterial regulatory proteins, lacI family KAF59_06345 PF01042 Endoribonuclease L-PSP KAF59_06350 PF04074 YhcH/YjgK/YiaL KAF59_06355 PF03009 Glycerophosphoryl diester phosphodiesterase family KAF59_06360 PF00455 DeoR C terminal sensor domain KAF59_06360 PF08220 DeoR-like helix-turn-helix domain KAF59_06365 PF17912 MalK OB fold domain KAF59_06365 PF00005 ABC transporter KAF59_06370 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_06375 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_06380 PF13416 Bacterial extracellular solute-binding protein KAF59_06390 PF01618 MotA/TolQ/ExbB proton channel family KAF59_06395 PF01618 MotA/TolQ/ExbB proton channel family KAF59_06400 PF02472 Biopolymer transport protein ExbD/TolR KAF59_06405 PF03544 Gram-negative bacterial TonB protein C-terminal KAF59_06415 PF14743 DNA ligase OB-like domain KAF59_06415 PF01068 ATP dependent DNA ligase domain KAF59_06425 PF01554 MatE KAF59_06435 PF03881 Fructosamine kinase KAF59_06445 PF00877 NlpC/P60 family KAF59_06450 PF02743 Cache domain KAF59_06450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_06450 PF00672 HAMP domain KAF59_06460 PF03942 DTW domain KAF59_06465 PF00480 ROK family KAF59_06485 PF03454 MoeA C-terminal region (domain IV) KAF59_06485 PF00994 Probable molybdopterin binding domain KAF59_06485 PF03453 MoeA N-terminal region (domain I and II) KAF59_06490 PF12804 MobA-like NTP transferase domain KAF59_06495 PF00005 ABC transporter KAF59_06495 PF08402 TOBE domain KAF59_06500 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_06505 PF12849 PBP superfamily domain KAF59_06510 PF02954 Bacterial regulatory protein, Fis family KAF59_06510 PF00072 Response regulator receiver domain KAF59_06510 PF00158 Sigma-54 interaction domain KAF59_06515 PF00512 His Kinase A (phospho-acceptor) domain KAF59_06515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_06515 PF00989 PAS fold KAF59_06520 PF12848 ABC transporter KAF59_06520 PF00005 ABC transporter KAF59_06525 PF02634 FdhD/NarQ family KAF59_06545 PF02613 Nitrate reductase delta subunit KAF59_06555 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KAF59_06555 PF01568 Molydopterin dinucleotide binding domain KAF59_06555 PF00384 Molybdopterin oxidoreductase KAF59_06560 PF13247 4Fe-4S dicluster domain KAF59_06575 PF02146 Sir2 family KAF59_06580 PF04461 Protein of unknown function (DUF520) KAF59_06585 PF00793 DAHP synthetase I family KAF59_06600 PF13509 S1 domain KAF59_06600 PF17783 CvfB-like winged helix domain KAF59_06605 PF01189 16S rRNA methyltransferase RsmB/F KAF59_06605 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF KAF59_06605 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF KAF59_06610 PF02470 MlaD protein KAF59_06615 PF04403 Paraquat-inducible protein A KAF59_06620 PF00664 ABC transporter transmembrane region KAF59_06620 PF00005 ABC transporter KAF59_06625 PF13185 GAF domain KAF59_06630 PF04352 ProQ/FINO family KAF59_06630 PF17516 ProQ C-terminal domain KAF59_06635 PF17804 Tail specific protease N-terminal domain KAF59_06635 PF03572 Peptidase family S41 KAF59_06635 PF00595 PDZ domain KAF59_06635 PF11818 C-terminal domain of tail specific protease (DUF3340) KAF59_06645 PF01433 Peptidase family M1 domain KAF59_06645 PF11940 Domain of unknown function (DUF3458) Ig-like fold KAF59_06645 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KAF59_06655 PF05088 Bacterial NAD-glutamate dehydrogenase KAF59_06660 PF01180 Dihydroorotate dehydrogenase KAF59_06665 PF07126 Cell-division protein ZapC KAF59_06670 PF10672 S-adenosylmethionine-dependent methyltransferase KAF59_06670 PF02926 THUMP domain KAF59_06670 PF01170 Putative RNA methylase family UPF0020 KAF59_06680 PF00005 ABC transporter KAF59_06680 PF16326 ABC transporter C-terminal domain KAF59_06680 PF12848 ABC transporter KAF59_06690 PF04957 Ribosome modulation factor KAF59_06695 PF07977 FabA-like domain KAF59_06700 PF05362 Lon protease (S16) C-terminal proteolytic domain KAF59_06700 PF13654 AAA domain KAF59_06705 PF17414 MatP C-terminal ribbon-helix-helix domain KAF59_06705 PF06303 MatP N-terminal domain KAF59_06780 PF01381 Helix-turn-helix KAF59_06800 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII KAF59_06805 PF10734 Protein of unknown function (DUF2523) KAF59_06810 PF05707 Zonular occludens toxin (Zot) KAF59_06815 PF01375 Heat-labile enterotoxin alpha chain KAF59_06820 PF01376 Heat-labile enterotoxin beta chain KAF59_06845 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII KAF59_06850 PF10734 Protein of unknown function (DUF2523) KAF59_06855 PF05707 Zonular occludens toxin (Zot) KAF59_06860 PF01375 Heat-labile enterotoxin alpha chain KAF59_06865 PF01376 Heat-labile enterotoxin beta chain KAF59_06875 PF05707 Zonular occludens toxin (Zot) KAF59_06925 PF12146 Serine aminopeptidase, S33 KAF59_06925 PF16671 Actin cross-linking domain KAF59_06925 PF11647 Membrane Localization Domain KAF59_06925 PF11713 Peptidase C80 family KAF59_06925 PF07634 RtxA repeat KAF59_06930 PF02794 RTX toxin acyltransferase family KAF59_06940 PF03412 Peptidase C39 family KAF59_06940 PF00005 ABC transporter KAF59_06940 PF00664 ABC transporter transmembrane region KAF59_06950 PF03412 Peptidase C39 family KAF59_06950 PF00005 ABC transporter KAF59_06950 PF00664 ABC transporter transmembrane region KAF59_06955 PF00512 His Kinase A (phospho-acceptor) domain KAF59_06955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_06955 PF00072 Response regulator receiver domain KAF59_06955 PF09308 LuxQ, periplasmic KAF59_06970 PF00115 Cytochrome C and Quinol oxidase polypeptide I KAF59_06985 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP KAF59_06985 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KAF59_06995 PF00403 Heavy-metal-associated domain KAF59_07010 PF00027 Cyclic nucleotide-binding domain KAF59_07010 PF13545 Crp-like helix-turn-helix domain KAF59_07015 PF00582 Universal stress protein family KAF59_07020 PF01171 PP-loop family KAF59_07040 PF00005 ABC transporter KAF59_07040 PF08402 TOBE domain KAF59_07045 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_07050 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_07055 PF13416 Bacterial extracellular solute-binding protein KAF59_07060 PF13416 Bacterial extracellular solute-binding protein KAF59_07075 PF01235 Sodium:alanine symporter family KAF59_07080 PF01810 LysE type translocator KAF59_07095 PF01764 Lipase (class 3) KAF59_07105 PF04717 Type VI secretion system, phage-baseplate injector KAF59_07105 PF16671 Actin cross-linking domain KAF59_07110 PF05638 Type VI secretion system effector, Hcp KAF59_07115 PF02074 Carboxypeptidase Taq (M32) metallopeptidase KAF59_07120 PF00672 HAMP domain KAF59_07120 PF02743 Cache domain KAF59_07120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_07125 PF07690 Major Facilitator Superfamily KAF59_07130 PF00529 HlyD membrane-fusion protein of T1SS KAF59_07130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KAF59_07135 PF02321 Outer membrane efflux protein KAF59_07145 PF00271 Helicase conserved C-terminal domain KAF59_07145 PF00270 DEAD/DEAH box helicase KAF59_07150 PF13426 PAS domain KAF59_07150 PF08447 PAS fold KAF59_07150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_07155 PF12729 Four helix bundle sensory module for signal transduction KAF59_07155 PF00672 HAMP domain KAF59_07155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_07160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_07160 PF17202 Single cache domain 3 KAF59_07160 PF00672 HAMP domain KAF59_07165 PF01584 CheW-like domain KAF59_07170 PF01339 CheB methylesterase KAF59_07170 PF00072 Response regulator receiver domain KAF59_07180 PF01739 CheR methyltransferase, SAM binding domain KAF59_07180 PF03705 CheR methyltransferase, all-alpha domain KAF59_07185 PF01584 CheW-like domain KAF59_07185 PF02895 Signal transducing histidine kinase, homodimeric domain KAF59_07185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_07185 PF01627 Hpt domain KAF59_07185 PF00072 Response regulator receiver domain KAF59_07190 PF01584 CheW-like domain KAF59_07190 PF02895 Signal transducing histidine kinase, homodimeric domain KAF59_07190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_07190 PF01627 Hpt domain KAF59_07190 PF07194 P2 response regulator binding domain KAF59_07200 PF00072 Response regulator receiver domain KAF59_07205 PF00672 HAMP domain KAF59_07205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_07210 PF00893 Small Multidrug Resistance protein KAF59_07215 PF00875 DNA photolyase KAF59_07215 PF03441 FAD binding domain of DNA photolyase KAF59_07220 PF07690 Major Facilitator Superfamily KAF59_07225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_07225 PF03466 LysR substrate binding domain KAF59_07235 PF10437 Bacterial lipoate protein ligase C-terminus KAF59_07235 PF03099 Biotin/lipoate A/B protein ligase family KAF59_07240 PF00012 Hsp70 protein KAF59_07250 PF00270 DEAD/DEAH box helicase KAF59_07250 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KAF59_07250 PF00271 Helicase conserved C-terminal domain KAF59_07250 PF04408 Helicase associated domain (HA2) KAF59_07250 PF11898 Domain of unknown function (DUF3418) KAF59_07270 PF00563 EAL domain KAF59_07270 PF00990 Diguanylate cyclase, GGDEF domain KAF59_07270 PF03707 Bacterial signalling protein N terminal repeat KAF59_07280 PF00012 Hsp70 protein KAF59_07285 PF00012 Hsp70 protein KAF59_07290 PF00990 Diguanylate cyclase, GGDEF domain KAF59_07290 PF17158 Membrane-associated sensor, integral membrane domain KAF59_07300 PF03707 Bacterial signalling protein N terminal repeat KAF59_07300 PF00563 EAL domain KAF59_07300 PF00990 Diguanylate cyclase, GGDEF domain KAF59_07320 PF06508 Queuosine biosynthesis protein QueC KAF59_07325 PF04055 Radical SAM superfamily KAF59_07335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KAF59_07335 PF10414 Sirohaem synthase dimerisation region KAF59_07335 PF14824 Sirohaem biosynthesis protein central KAF59_07340 PF00497 Bacterial extracellular solute-binding proteins, family 3 KAF59_07345 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_07350 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_07355 PF00005 ABC transporter KAF59_07360 PF01027 Inhibitor of apoptosis-promoting Bax1 KAF59_07365 PF04358 DsrC like protein KAF59_07370 PF00708 Acylphosphatase KAF59_07375 PF10672 S-adenosylmethionine-dependent methyltransferase KAF59_07375 PF17785 PUA-like domain KAF59_07380 PF00990 Diguanylate cyclase, GGDEF domain KAF59_07385 PF08534 Redoxin KAF59_07385 PF00462 Glutaredoxin KAF59_07390 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KAF59_07390 PF01627 Hpt domain KAF59_07390 PF00072 Response regulator receiver domain KAF59_07390 PF00512 His Kinase A (phospho-acceptor) domain KAF59_07390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_07390 PF00672 HAMP domain KAF59_07395 PF00072 Response regulator receiver domain KAF59_07400 PF02798 Glutathione S-transferase, N-terminal domain KAF59_07400 PF14497 Glutathione S-transferase, C-terminal domain KAF59_07410 PF04209 homogentisate 1,2-dioxygenase KAF59_07415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KAF59_07420 PF01546 Peptidase family M20/M25/M40 KAF59_07420 PF07687 Peptidase dimerisation domain KAF59_07435 PF13193 AMP-binding enzyme C-terminal domain KAF59_07435 PF16177 Acetyl-coenzyme A synthetase N-terminus KAF59_07435 PF00501 AMP-binding enzyme KAF59_07440 PF04303 PrpF protein KAF59_07445 PF00330 Aconitase family (aconitate hydratase) KAF59_07445 PF00694 Aconitase C-terminal domain KAF59_07450 PF00285 Citrate synthase, C-terminal domain KAF59_07460 PF00392 Bacterial regulatory proteins, gntR family KAF59_07460 PF07729 FCD domain KAF59_07475 PF01970 Tripartite tricarboxylate transporter TctA family KAF59_07490 PF02653 Branched-chain amino acid transport system / permease component KAF59_07495 PF00005 ABC transporter KAF59_07500 PF13407 Periplasmic binding protein domain KAF59_07520 PF00072 Response regulator receiver domain KAF59_07520 PF00486 Transcriptional regulatory protein, C terminal KAF59_07525 PF00672 HAMP domain KAF59_07525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_07525 PF00512 His Kinase A (phospho-acceptor) domain KAF59_07530 PF06629 MltA-interacting protein MipA KAF59_07535 PF04393 Protein of unknown function (DUF535) KAF59_07540 PF00072 Response regulator receiver domain KAF59_07540 PF02954 Bacterial regulatory protein, Fis family KAF59_07540 PF00158 Sigma-54 interaction domain KAF59_07545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_07545 PF00512 His Kinase A (phospho-acceptor) domain KAF59_07545 PF00497 Bacterial extracellular solute-binding proteins, family 3 KAF59_07550 PF00939 Sodium:sulfate symporter transmembrane region KAF59_07555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_07555 PF00672 HAMP domain KAF59_07560 PF00842 Alanine racemase, C-terminal domain KAF59_07560 PF01168 Alanine racemase, N-terminal domain KAF59_07565 PF00892 EamA-like transporter family KAF59_07575 PF13302 Acetyltransferase (GNAT) domain KAF59_07580 PF00158 Sigma-54 interaction domain KAF59_07580 PF18024 Helix-turn-helix domain KAF59_07585 PF05128 Domain of unknown function (DUF697) KAF59_07590 PF04317 YcjX-like family, DUF463 KAF59_07605 PF04715 Anthranilate synthase component I, N terminal region KAF59_07605 PF00425 chorismate binding enzyme KAF59_07610 PF00293 NUDIX domain KAF59_07615 PF03222 Tryptophan/tyrosine permease family KAF59_07620 PF03313 Serine dehydratase alpha chain KAF59_07620 PF03315 Serine dehydratase beta chain KAF59_07625 PF01242 6-pyruvoyl tetrahydropterin synthase KAF59_07630 PF00672 HAMP domain KAF59_07630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_07635 PF01336 OB-fold nucleic acid binding domain KAF59_07635 PF00152 tRNA synthetases class II (D, K and N) KAF59_07640 PF08543 Phosphomethylpyrimidine kinase KAF59_07645 PF01966 HD domain KAF59_07645 PF00672 HAMP domain KAF59_07650 PF00155 Aminotransferase class I and II KAF59_07665 PF17200 Single Cache domain 2 KAF59_07665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_07665 PF00672 HAMP domain KAF59_07670 PF04349 Periplasmic glucan biosynthesis protein, MdoG KAF59_07675 PF13506 Glycosyl transferase family 21 KAF59_07680 PF00356 Bacterial regulatory proteins, lacI family KAF59_07685 PF04794 YdjC-like protein KAF59_07690 PF02056 Family 4 glycosyl hydrolase KAF59_07690 PF11975 Family 4 glycosyl hydrolase C-terminal domain KAF59_07695 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KAF59_07700 PF02378 Phosphotransferase system, EIIC KAF59_07705 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KAF59_07710 PF01522 Polysaccharide deacetylase KAF59_07715 PF02028 BCCT, betaine/carnitine/choline family transporter KAF59_07720 PF01047 MarR family KAF59_07725 PF00196 Bacterial regulatory proteins, luxR family KAF59_07725 PF00072 Response regulator receiver domain KAF59_07730 PF17200 Single Cache domain 2 KAF59_07730 PF07730 Histidine kinase KAF59_07735 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KAF59_07745 PF03480 Bacterial extracellular solute-binding protein, family 7 KAF59_07760 PF00753 Metallo-beta-lactamase superfamily KAF59_07765 PF05951 Bacterial protein of unknown function (DUF882) KAF59_07770 PF03734 L,D-transpeptidase catalytic domain KAF59_07770 PF01471 Putative peptidoglycan binding domain KAF59_07795 PF00925 GTP cyclohydrolase II KAF59_07805 PF07690 Major Facilitator Superfamily KAF59_07815 PF00581 Rhodanese-like domain KAF59_07815 PF17773 UPF0176 acylphosphatase like domain KAF59_07820 PF03989 DNA gyrase C-terminal domain, beta-propeller KAF59_07820 PF00521 DNA gyrase/topoisomerase IV, subunit A KAF59_07830 PF03477 ATP cone domain KAF59_07830 PF02867 Ribonucleotide reductase, barrel domain KAF59_07830 PF00317 Ribonucleotide reductase, all-alpha domain KAF59_07835 PF00268 Ribonucleotide reductase, small chain KAF59_07840 PF00970 Oxidoreductase FAD-binding domain KAF59_07840 PF00175 Oxidoreductase NAD-binding domain KAF59_07840 PF00111 2Fe-2S iron-sulfur cluster binding domain KAF59_07850 PF00994 Probable molybdopterin binding domain KAF59_07865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_07865 PF17200 Single Cache domain 2 KAF59_07865 PF00672 HAMP domain KAF59_07880 PF00005 ABC transporter KAF59_07885 PF01032 FecCD transport family KAF59_07890 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KAF59_07900 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KAF59_07905 PF02654 Cobalamin-5-phosphate synthase KAF59_07910 PF02277 Phosphoribosyltransferase KAF59_07915 PF01641 SelR domain KAF59_07920 PF00375 Sodium:dicarboxylate symporter family KAF59_07925 PF00929 Exonuclease KAF59_07925 PF08411 Exonuclease C-terminal KAF59_07930 PF03788 LrgA family KAF59_07935 PF04172 LrgB-like family KAF59_07940 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region KAF59_07940 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KAF59_07950 PF02222 ATP-grasp domain KAF59_07955 PF05724 Thiopurine S-methyltransferase (TPMT) KAF59_07965 PF00216 Bacterial DNA-binding protein KAF59_07970 PF03483 B3/4 domain KAF59_07970 PF03484 tRNA synthetase B5 domain KAF59_07970 PF03147 Ferredoxin-fold anticodon binding domain KAF59_07970 PF01588 Putative tRNA binding domain KAF59_07970 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KAF59_07975 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KAF59_07975 PF01409 tRNA synthetases class II core domain (F) KAF59_07985 PF00072 Response regulator receiver domain KAF59_07985 PF00990 Diguanylate cyclase, GGDEF domain KAF59_08010 PF01066 CDP-alcohol phosphatidyltransferase KAF59_08015 PF08459 UvrC Helix-hairpin-helix N-terminal KAF59_08015 PF01541 GIY-YIG catalytic domain KAF59_08015 PF02151 UvrB/uvrC motif KAF59_08020 PF00196 Bacterial regulatory proteins, luxR family KAF59_08020 PF00072 Response regulator receiver domain KAF59_08025 PF03104 DNA polymerase family B, exonuclease domain KAF59_08025 PF00136 DNA polymerase family B KAF59_08030 PF00563 EAL domain KAF59_08030 PF00990 Diguanylate cyclase, GGDEF domain KAF59_08030 PF13426 PAS domain KAF59_08040 PF01132 Elongation factor P (EF-P) OB domain KAF59_08040 PF09285 Elongation factor P, C-terminal KAF59_08040 PF08207 Elongation factor P (EF-P) KOW-like domain KAF59_08045 PF04269 Protein of unknown function, DUF440 KAF59_08055 PF07702 UTRA domain KAF59_08055 PF00392 Bacterial regulatory proteins, gntR family KAF59_08060 PF01979 Amidohydrolase family KAF59_08065 PF00491 Arginase family KAF59_08070 PF01175 Urocanase Rossmann-like domain KAF59_08070 PF17392 Urocanase C-terminal domain KAF59_08070 PF17391 Urocanase N-terminal domain KAF59_08075 PF00221 Aromatic amino acid lyase KAF59_08085 PF00089 Trypsin KAF59_08090 PF04191 Phospholipid methyltransferase KAF59_08095 PF02913 FAD linked oxidases, C-terminal domain KAF59_08095 PF01565 FAD binding domain KAF59_08095 PF13183 4Fe-4S dicluster domain KAF59_08110 PF13488 Glycine zipper KAF59_08110 PF00691 OmpA family KAF59_08130 PF01259 SAICAR synthetase KAF59_08140 PF03949 Malic enzyme, NAD binding domain KAF59_08140 PF00390 Malic enzyme, N-terminal domain KAF59_08150 PF02698 DUF218 domain KAF59_08155 PF00990 Diguanylate cyclase, GGDEF domain KAF59_08155 PF08448 PAS fold KAF59_08160 PF00266 Aminotransferase class-V KAF59_08170 PF07992 Pyridine nucleotide-disulphide oxidoreductase KAF59_08175 PF00005 ABC transporter KAF59_08175 PF00664 ABC transporter transmembrane region KAF59_08180 PF00005 ABC transporter KAF59_08180 PF00664 ABC transporter transmembrane region KAF59_08185 PF00849 RNA pseudouridylate synthase KAF59_08185 PF01479 S4 domain KAF59_08190 PF01300 Telomere recombination KAF59_08195 PF02811 PHP domain KAF59_08200 PF08056 Tryptophan operon leader peptide KAF59_08205 PF04715 Anthranilate synthase component I, N terminal region KAF59_08205 PF00425 chorismate binding enzyme KAF59_08210 PF00117 Glutamine amidotransferase class-I KAF59_08215 PF02885 Glycosyl transferase family, helical bundle domain KAF59_08215 PF00591 Glycosyl transferase family, a/b domain KAF59_08220 PF00218 Indole-3-glycerol phosphate synthase KAF59_08220 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KAF59_08225 PF00291 Pyridoxal-phosphate dependent enzyme KAF59_08230 PF00290 Tryptophan synthase alpha chain KAF59_08235 PF00375 Sodium:dicarboxylate symporter family KAF59_08240 PF00265 Thymidine kinase KAF59_08245 PF02938 GAD domain KAF59_08245 PF00152 tRNA synthetases class II (D, K and N) KAF59_08245 PF01336 OB-fold nucleic acid binding domain KAF59_08250 PF01904 Protein of unknown function DUF72 KAF59_08255 PF13649 Methyltransferase domain KAF59_08260 PF08003 Protein of unknown function (DUF1698) KAF59_08265 PF08443 RimK-like ATP-grasp domain KAF59_08265 PF18030 RimK PreATP-grasp domain KAF59_08280 PF00266 Aminotransferase class-V KAF59_08290 PF00989 PAS fold KAF59_08290 PF00512 His Kinase A (phospho-acceptor) domain KAF59_08290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_08305 PF04993 TfoX N-terminal domain KAF59_08305 PF04994 TfoX C-terminal domain KAF59_08315 PF03956 Lysine exporter LysO KAF59_08325 PF00282 Pyridoxal-dependent decarboxylase conserved domain KAF59_08330 PF01418 Helix-turn-helix domain, rpiR family KAF59_08330 PF01380 SIS domain KAF59_08335 PF00171 Aldehyde dehydrogenase family KAF59_08335 PF00465 Iron-containing alcohol dehydrogenase KAF59_08340 PF00462 Glutaredoxin KAF59_08345 PF06826 Predicted Permease Membrane Region KAF59_08345 PF02080 TrkA-C domain KAF59_08350 PF17871 AAA lid domain KAF59_08350 PF10431 C-terminal, D2-small domain, of ClpB protein KAF59_08350 PF07724 AAA domain (Cdc48 subfamily) KAF59_08350 PF02861 Clp amino terminal domain, pathogenicity island component KAF59_08350 PF00004 ATPase family associated with various cellular activities (AAA) KAF59_08355 PF02617 ATP-dependent Clp protease adaptor protein ClpS KAF59_08360 PF00313 'Cold-shock' DNA-binding domain KAF59_08365 PF03971 Monomeric isocitrate dehydrogenase KAF59_08370 PF00849 RNA pseudouridylate synthase KAF59_08375 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase KAF59_08375 PF01502 Phosphoribosyl-AMP cyclohydrolase KAF59_08380 PF00977 Histidine biosynthesis protein KAF59_08385 PF00977 Histidine biosynthesis protein KAF59_08390 PF00117 Glutamine amidotransferase class-I KAF59_08395 PF08645 Polynucleotide kinase 3 phosphatase KAF59_08395 PF00475 Imidazoleglycerol-phosphate dehydratase KAF59_08400 PF00155 Aminotransferase class I and II KAF59_08405 PF00815 Histidinol dehydrogenase KAF59_08410 PF08029 HisG, C-terminal domain KAF59_08410 PF01634 ATP phosphoribosyltransferase KAF59_08415 PF03553 Na+/H+ antiporter family KAF59_08420 PF00816 H-NS histone family KAF59_08425 PF00294 pfkB family carbohydrate kinase KAF59_08435 PF04356 Protein of unknown function (DUF489) KAF59_08440 PF08328 Adenylosuccinate lyase C-terminal KAF59_08440 PF00206 Lyase KAF59_08450 PF16036 Chalcone isomerase-like KAF59_08475 PF00106 short chain dehydrogenase KAF59_08485 PF01435 Peptidase family M48 KAF59_08500 PF08241 Methyltransferase domain KAF59_08505 PF00155 Aminotransferase class I and II KAF59_08510 PF06968 Biotin and Thiamin Synthesis associated domain KAF59_08510 PF04055 Radical SAM superfamily KAF59_08515 PF00202 Aminotransferase class-III KAF59_08520 PF02403 Seryl-tRNA synthetase N-terminal domain KAF59_08520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KAF59_08525 PF12002 MgsA AAA+ ATPase C terminal KAF59_08525 PF00004 ATPase family associated with various cellular activities (AAA) KAF59_08525 PF16193 AAA C-terminal domain KAF59_08530 PF03548 Outer membrane lipoprotein carrier protein LolA KAF59_08535 PF02810 SEC-C motif KAF59_08535 PF07517 SecA DEAD-like domain KAF59_08535 PF01043 SecA preprotein cross-linking domain KAF59_08535 PF07516 SecA Wing and Scaffold domain KAF59_08540 PF01207 Dihydrouridine synthase (Dus) KAF59_08545 PF00990 Diguanylate cyclase, GGDEF domain KAF59_08550 PF00005 ABC transporter KAF59_08555 PF02653 Branched-chain amino acid transport system / permease component KAF59_08565 PF09905 DNA-binding protein VF530 KAF59_08570 PF04217 Protein of unknown function, DUF412 KAF59_08575 PF00871 Acetokinase family KAF59_08580 PF07085 DRTGG domain KAF59_08580 PF01515 Phosphate acetyl/butaryl transferase KAF59_08585 PF13409 Glutathione S-transferase, N-terminal domain KAF59_08590 PF00005 ABC transporter KAF59_08590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KAF59_08595 PF00005 ABC transporter KAF59_08595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KAF59_08600 PF12911 N-terminal TM domain of oligopeptide transport permease C KAF59_08600 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_08605 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_08610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KAF59_08620 PF00072 Response regulator receiver domain KAF59_08620 PF13188 PAS domain KAF59_08620 PF08448 PAS fold KAF59_08620 PF00512 His Kinase A (phospho-acceptor) domain KAF59_08620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_08625 PF00072 Response regulator receiver domain KAF59_08625 PF00158 Sigma-54 interaction domain KAF59_08625 PF02954 Bacterial regulatory protein, Fis family KAF59_08630 PF00563 EAL domain KAF59_08630 PF00990 Diguanylate cyclase, GGDEF domain KAF59_08630 PF03707 Bacterial signalling protein N terminal repeat KAF59_08630 PF13188 PAS domain KAF59_08635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_08635 PF00512 His Kinase A (phospho-acceptor) domain KAF59_08640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_08640 PF00512 His Kinase A (phospho-acceptor) domain KAF59_08640 PF00989 PAS fold KAF59_08640 PF13188 PAS domain KAF59_08640 PF13426 PAS domain KAF59_08650 PF00072 Response regulator receiver domain KAF59_08665 PF01300 Telomere recombination KAF59_08665 PF03481 Putative GTP-binding controlling metal-binding KAF59_08680 PF01161 Phosphatidylethanolamine-binding protein KAF59_08690 PF00704 Glycosyl hydrolases family 18 KAF59_08690 PF06483 Chitinase C KAF59_08705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KAF59_08705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KAF59_08710 PF01022 Bacterial regulatory protein, arsR family KAF59_08720 PF00990 Diguanylate cyclase, GGDEF domain KAF59_08720 PF08448 PAS fold KAF59_08730 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KAF59_08745 PF01037 Lrp/AsnC ligand binding domain KAF59_08745 PF13404 AsnC-type helix-turn-helix domain KAF59_08750 PF00291 Pyridoxal-phosphate dependent enzyme KAF59_08755 PF08496 Peptidase family S49 N-terminal KAF59_08755 PF01343 Peptidase family S49 KAF59_08760 PF00106 short chain dehydrogenase KAF59_08765 PF03692 Putative zinc- or iron-chelating domain KAF59_08770 PF03692 Putative zinc- or iron-chelating domain KAF59_08775 PF02132 RecR protein KAF59_08775 PF13662 Toprim domain KAF59_08780 PF02575 YbaB/EbfC DNA-binding family KAF59_08785 PF12170 DNA polymerase III tau subunit V interacting with alpha KAF59_08785 PF12169 DNA polymerase III subunits gamma and tau domain III KAF59_08785 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KAF59_08790 PF00156 Phosphoribosyl transferase domain KAF59_08795 PF04304 Protein of unknown function (DUF454) KAF59_08800 PF00072 Response regulator receiver domain KAF59_08805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_08805 PF03466 LysR substrate binding domain KAF59_08810 PF00881 Nitroreductase family KAF59_08815 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KAF59_08815 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KAF59_08815 PF00378 Enoyl-CoA hydratase/isomerase KAF59_08820 PF02803 Thiolase, C-terminal domain KAF59_08820 PF00108 Thiolase, N-terminal domain KAF59_08825 PF04542 Sigma-70 region 2 KAF59_08825 PF08281 Sigma-70, region 4 KAF59_08835 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KAF59_08840 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KAF59_08845 PF01451 Low molecular weight phosphotyrosine protein phosphatase KAF59_08850 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP KAF59_08850 PF12557 Cob(I)alamin adenosyltransferase N terminal KAF59_08855 PF05170 AsmA family KAF59_08860 PF00485 Phosphoribulokinase / Uridine kinase family KAF59_08865 PF10609 NUBPL iron-transfer P-loop NTPase KAF59_08870 PF09334 tRNA synthetases class I (M) KAF59_08870 PF01588 Putative tRNA binding domain KAF59_08880 PF01048 Phosphorylase superfamily KAF59_08885 PF00403 Heavy-metal-associated domain KAF59_08890 PF01743 Poly A polymerase head domain KAF59_08890 PF00571 CBS domain KAF59_08895 PF07694 5TMR of 5TMR-LYT KAF59_08895 PF00990 Diguanylate cyclase, GGDEF domain KAF59_08900 PF02391 MoaE protein KAF59_08905 PF02597 ThiS family KAF59_08910 PF01967 MoaC family KAF59_08915 PF00994 Probable molybdopterin binding domain KAF59_08920 PF04055 Radical SAM superfamily KAF59_08920 PF06463 Molybdenum Cofactor Synthesis C KAF59_08925 PF01933 Uncharacterised protein family UPF0052 KAF59_08930 PF01627 Hpt domain KAF59_08935 PF02954 Bacterial regulatory protein, Fis family KAF59_08935 PF00072 Response regulator receiver domain KAF59_08935 PF00158 Sigma-54 interaction domain KAF59_08940 PF17757 UvrB interaction domain KAF59_08940 PF02151 UvrB/uvrC motif KAF59_08940 PF04851 Type III restriction enzyme, res subunit KAF59_08940 PF00271 Helicase conserved C-terminal domain KAF59_08940 PF12344 Ultra-violet resistance protein B KAF59_08950 PF02508 Rnf-Nqr subunit, membrane protein KAF59_08955 PF04060 Putative Fe-S cluster KAF59_08960 PF10531 SLBB domain KAF59_08960 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KAF59_08960 PF12838 4Fe-4S dicluster domain KAF59_08960 PF13375 RnfC Barrel sandwich hybrid domain KAF59_08965 PF03116 NQR2, RnfD, RnfE family KAF59_08970 PF04205 FMN-binding domain KAF59_08975 PF02508 Rnf-Nqr subunit, membrane protein KAF59_08980 PF10576 Iron-sulfur binding domain of endonuclease III KAF59_08980 PF00633 Helix-hairpin-helix motif KAF59_08980 PF00730 HhH-GPD superfamily base excision DNA repair protein KAF59_08985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KAF59_08990 PF10952 Protein of unknown function (DUF2753) KAF59_08995 PF00691 OmpA family KAF59_08995 PF18393 MotY N-terminal domain KAF59_09000 PF00929 Exonuclease KAF59_09005 PF13726 Na+-H+ antiporter family KAF59_09005 PF03553 Na+/H+ antiporter family KAF59_09010 PF00156 Phosphoribosyl transferase domain KAF59_09015 PF02674 Colicin V production protein KAF59_09020 PF05036 Sporulation related domain KAF59_09025 PF02875 Mur ligase family, glutamate ligase domain KAF59_09025 PF08245 Mur ligase middle domain KAF59_09030 PF01039 Carboxyl transferase domain KAF59_09030 PF17848 Acetyl-coA carboxylase zinc finger domain KAF59_09035 PF01416 tRNA pseudouridine synthase KAF59_09045 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KAF59_09045 PF00749 tRNA synthetases class I (E and Q), catalytic domain KAF59_09050 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KAF59_09050 PF00367 phosphotransferase system, EIIB KAF59_09050 PF02378 Phosphotransferase system, EIIC KAF59_09055 PF01979 Amidohydrolase family KAF59_09060 PF01047 MarR family KAF59_09060 PF00480 ROK family KAF59_09065 PF00999 Sodium/hydrogen exchanger family KAF59_09065 PF02254 TrkA-N domain KAF59_09070 PF00733 Asparagine synthase KAF59_09070 PF13537 Glutamine amidotransferase domain KAF59_09075 PF02357 Transcription termination factor nusG KAF59_09080 PF00854 POT family KAF59_09085 PF00762 Ferrochelatase KAF59_09090 PF05191 Adenylate kinase, active site lid KAF59_09095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_09095 PF00183 Hsp90 protein KAF59_09105 PF17323 Trans-membrane regulatory protein ToxS KAF59_09115 PF12850 Calcineurin-like phosphoesterase superfamily domain KAF59_09120 PF08338 Domain of unknown function (DUF1731) KAF59_09120 PF01370 NAD dependent epimerase/dehydratase family KAF59_09125 PF00106 short chain dehydrogenase KAF59_09130 PF00085 Thioredoxin KAF59_09135 PF01145 SPFH domain / Band 7 family KAF59_09135 PF16200 C-terminal region of band_7 KAF59_09140 PF01957 NfeD-like C-terminal, partner-binding KAF59_09145 PF13411 MerR HTH family regulatory protein KAF59_09155 PF13609 Gram-negative porin KAF59_09160 PF00533 BRCA1 C Terminus (BRCT) domain KAF59_09160 PF01653 NAD-dependent DNA ligase adenylation domain KAF59_09160 PF03120 NAD-dependent DNA ligase OB-fold domain KAF59_09160 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KAF59_09160 PF12826 Helix-hairpin-helix motif KAF59_09165 PF04354 ZipA, C-terminal FtsZ-binding domain KAF59_09175 PF00291 Pyridoxal-phosphate dependent enzyme KAF59_09180 PF00381 PTS HPr component phosphorylation site KAF59_09185 PF05524 PEP-utilising enzyme, N-terminal KAF59_09185 PF00391 PEP-utilising enzyme, mobile domain KAF59_09185 PF02896 PEP-utilising enzyme, TIM barrel domain KAF59_09190 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KAF59_09195 PF01494 FAD binding domain KAF59_09200 PF00919 Uncharacterized protein family UPF0004 KAF59_09200 PF01938 TRAM domain KAF59_09200 PF04055 Radical SAM superfamily KAF59_09205 PF02562 PhoH-like protein KAF59_09210 PF02130 Uncharacterized protein family UPF0054 KAF59_09215 PF00571 CBS domain KAF59_09215 PF03471 Transporter associated domain KAF59_09220 PF00795 Carbon-nitrogen hydrolase KAF59_09225 PF07295 Zinc-ribbon containing domain KAF59_09230 PF08264 Anticodon-binding domain of tRNA KAF59_09230 PF00133 tRNA synthetases class I (I, L, M and V) KAF59_09230 PF13603 Leucyl-tRNA synthetase, Domain 2 KAF59_09235 PF04390 Lipopolysaccharide-assembly KAF59_09240 PF06144 DNA polymerase III, delta subunit KAF59_09240 PF14840 Processivity clamp loader gamma complex DNA pol III C-term KAF59_09250 PF02590 Predicted SPOUT methyltransferase KAF59_09255 PF03717 Penicillin-binding Protein dimerisation domain KAF59_09255 PF00905 Penicillin binding protein transpeptidase domain KAF59_09260 PF01098 Cell cycle protein KAF59_09265 PF03330 Lytic transglycolase KAF59_09265 PF05036 Sporulation related domain KAF59_09270 PF07943 Penicillin-binding protein 5, C-terminal domain KAF59_09270 PF00768 D-alanyl-D-alanine carboxypeptidase KAF59_09275 PF04359 Protein of unknown function (DUF493) KAF59_09280 PF03099 Biotin/lipoate A/B protein ligase family KAF59_09285 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family KAF59_09285 PF04055 Radical SAM superfamily KAF59_09295 PF00464 Serine hydroxymethyltransferase KAF59_09315 PF13807 G-rich domain on putative tyrosine kinase KAF59_09315 PF02706 Chain length determinant protein KAF59_09315 PF13614 AAA domain KAF59_09320 PF02563 Polysaccharide biosynthesis/export protein KAF59_09320 PF10531 SLBB domain KAF59_09320 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KAF59_09330 PF02397 Bacterial sugar transferase KAF59_09345 PF17945 Beta/Gamma crystallin KAF59_09345 PF12561 ToxR activated gene A lipoprotein domain KAF59_09360 PF03808 Glycosyl transferase WecB/TagA/CpsF family KAF59_09370 PF00534 Glycosyl transferases group 1 KAF59_09370 PF00862 Sucrose synthase KAF59_09380 PF00132 Bacterial transferase hexapeptide (six repeats) KAF59_09400 PF14602 Hexapeptide repeat of succinyl-transferase KAF59_09400 PF12464 Maltose acetyltransferase KAF59_09405 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KAF59_09405 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KAF59_09405 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KAF59_09410 PF02350 UDP-N-acetylglucosamine 2-epimerase KAF59_09415 PF01451 Low molecular weight phosphotyrosine protein phosphatase KAF59_09420 PF00873 AcrB/AcrD/AcrF family KAF59_09425 PF13533 Biotin-lipoyl like KAF59_09450 PF00128 Alpha amylase, catalytic domain KAF59_09450 PF16657 Maltogenic Amylase, C-terminal domain KAF59_09455 PF00367 phosphotransferase system, EIIB KAF59_09455 PF02378 Phosphotransferase system, EIIC KAF59_09460 PF00356 Bacterial regulatory proteins, lacI family KAF59_09470 PF00005 ABC transporter KAF59_09470 PF09383 NIL domain KAF59_09475 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_09480 PF03180 NLPA lipoprotein KAF59_09485 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) KAF59_09490 PF07348 Syd protein (SUKH-2) KAF59_09495 PF14489 QueF-like protein KAF59_09495 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KAF59_09505 PF00990 Diguanylate cyclase, GGDEF domain KAF59_09510 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases KAF59_09510 PF03641 Possible lysine decarboxylase KAF59_09510 PF11892 Domain of unknown function (DUF3412) KAF59_09515 PF01367 5'-3' exonuclease, C-terminal SAM fold KAF59_09515 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KAF59_09520 PF04241 Protein of unknown function (DUF423) KAF59_09525 PF03466 LysR substrate binding domain KAF59_09525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_09530 PF02926 THUMP domain KAF59_09530 PF02568 Thiamine biosynthesis protein (ThiI) KAF59_09535 PF13677 Membrane MotB of proton-channel complex MotA/MotB KAF59_09535 PF00691 OmpA family KAF59_09540 PF01618 MotA/TolQ/ExbB proton channel family KAF59_09545 PF02609 Exonuclease VII small subunit KAF59_09550 PF00348 Polyprenyl synthetase KAF59_09555 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KAF59_09555 PF02779 Transketolase, pyrimidine binding domain KAF59_09555 PF02780 Transketolase, C-terminal domain KAF59_09560 PF00849 RNA pseudouridylate synthase KAF59_09565 PF04287 tRNA pseudouridine synthase C KAF59_09580 PF13302 Acetyltransferase (GNAT) domain KAF59_09590 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KAF59_09595 PF03806 AbgT putative transporter family KAF59_09600 PF00444 Ribosomal protein L36 KAF59_09605 PF01197 Ribosomal protein L31 KAF59_09610 PF01980 tRNA-methyltransferase O KAF59_09610 PF18389 TrmO C-terminal domain KAF59_09615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KAF59_09615 PF03129 Anticodon binding domain KAF59_09615 PF04073 Aminoacyl-tRNA editing domain KAF59_09625 PF06786 Uncharacterised protein family (UPF0253) KAF59_09635 PF01797 Transposase IS200 like KAF59_09640 PF02769 AIR synthase related protein, C-terminal domain KAF59_09640 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KAF59_09640 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KAF59_09650 PF01464 Transglycosylase SLT domain KAF59_09650 PF00497 Bacterial extracellular solute-binding proteins, family 3 KAF59_09655 PF14437 MafB19-like deaminase KAF59_09660 PF03806 AbgT putative transporter family KAF59_09685 PF07963 Prokaryotic N-terminal methylation motif KAF59_09685 PF00114 Pilin (bacterial filament) KAF59_09690 PF00226 DnaJ domain KAF59_09690 PF01556 DnaJ C terminal domain KAF59_09690 PF00684 DnaJ central domain KAF59_09695 PF00012 Hsp70 protein KAF59_09705 PF01025 GrpE KAF59_09710 PF01513 ATP-NAD kinase KAF59_09715 PF02463 RecF/RecN/SMC N terminal domain KAF59_09720 PF04355 SmpA / OmlA family KAF59_09725 PF03658 RnfH family Ubiquitin KAF59_09730 PF03364 Polyketide cyclase / dehydrase and lipid transport KAF59_09735 PF01668 SmpB protein KAF59_09745 PF13356 Arm DNA-binding domain KAF59_09745 PF00589 Phage integrase family KAF59_09755 PF00589 Phage integrase family KAF59_09755 PF13356 Arm DNA-binding domain KAF59_09760 PF13322 Domain of unknown function (DUF4092) KAF59_09760 PF17291 N-terminal domain of M60-like peptidases KAF59_09760 PF13402 Peptidase M60, enhancin and enhancin-like KAF59_09770 PF01551 Peptidase family M23 KAF59_09770 PF04225 Opacity-associated protein A LysM-like domain KAF59_09785 PF02743 Cache domain KAF59_09785 PF00672 HAMP domain KAF59_09785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_09790 PF06750 Bacterial Peptidase A24 N-terminal domain KAF59_09790 PF01478 Type IV leader peptidase family KAF59_09795 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family KAF59_09800 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F KAF59_09805 PF00482 Type II secretion system (T2SS), protein F KAF59_09810 PF00437 Type II/IV secretion system protein KAF59_09815 PF17456 Toxin-coregulated pilus protein S KAF59_09835 PF10671 Toxin co-regulated pilus biosynthesis protein Q KAF59_09845 PF07963 Prokaryotic N-terminal methylation motif KAF59_09845 PF05946 Toxin-coregulated pilus subunit TcpA KAF59_09855 PF00486 Transcriptional regulatory protein, C terminal KAF59_09860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_09865 PF08534 Redoxin KAF59_09880 PF00041 Fibronectin type III domain KAF59_09880 PF12561 ToxR activated gene A lipoprotein domain KAF59_09885 PF00171 Aldehyde dehydrogenase family KAF59_09945 PF11953 Domain of unknown function (DUF3470) KAF59_09945 PF00037 4Fe-4S binding domain KAF59_09950 PF08032 RNA 2'-O ribose methyltransferase substrate binding KAF59_09950 PF00588 SpoU rRNA Methylase family KAF59_09960 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KAF59_09965 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase KAF59_09970 PF04223 Citrate lyase, alpha subunit (CitF) KAF59_09975 PF03328 HpcH/HpaI aldolase/citrate lyase family KAF59_09980 PF06857 Malonate decarboxylase delta subunit (MdcD) KAF59_09985 PF08218 Citrate lyase ligase C-terminal domain KAF59_09990 PF03390 2-hydroxycarboxylate transporter family KAF59_09995 PF04277 Oxaloacetate decarboxylase, gamma chain KAF59_10000 PF00364 Biotin-requiring enzyme KAF59_10000 PF00682 HMGL-like KAF59_10000 PF02436 Conserved carboxylase domain KAF59_10005 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit KAF59_10010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_10010 PF17203 Single cache domain 3 KAF59_10015 PF12431 Transcriptional regulator KAF59_10015 PF00072 Response regulator receiver domain KAF59_10030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_10030 PF03466 LysR substrate binding domain KAF59_10035 PF01266 FAD dependent oxidoreductase KAF59_10040 PF01235 Sodium:alanine symporter family KAF59_10045 PF14864 Alkyl sulfatase C-terminal KAF59_10045 PF14863 Alkyl sulfatase dimerisation KAF59_10045 PF00753 Metallo-beta-lactamase superfamily KAF59_10050 PF03466 LysR substrate binding domain KAF59_10050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_10055 PF17837 4'-phosphopantetheinyl transferase N-terminal domain KAF59_10055 PF01648 4'-phosphopantetheinyl transferase superfamily KAF59_10060 PF00005 ABC transporter KAF59_10065 PF01032 FecCD transport family KAF59_10070 PF01032 FecCD transport family KAF59_10075 PF01497 Periplasmic binding protein KAF59_10090 PF00425 chorismate binding enzyme KAF59_10095 PF13193 AMP-binding enzyme C-terminal domain KAF59_10095 PF00501 AMP-binding enzyme KAF59_10100 PF00857 Isochorismatase family KAF59_10100 PF00550 Phosphopantetheine attachment site KAF59_10105 PF01184 GPR1/FUN34/yaaH family KAF59_10110 PF06483 Chitinase C KAF59_10110 PF00704 Glycosyl hydrolases family 18 KAF59_10115 PF00117 Glutamine amidotransferase class-I KAF59_10115 PF00958 GMP synthase C terminal domain KAF59_10115 PF02540 NAD synthase KAF59_10120 PF00571 CBS domain KAF59_10120 PF00478 IMP dehydrogenase / GMP reductase domain KAF59_10125 PF02601 Exonuclease VII, large subunit KAF59_10125 PF13742 OB-fold nucleic acid binding domain KAF59_10140 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KAF59_10140 PF01926 50S ribosome-binding GTPase KAF59_10145 PF13360 PQQ-like domain KAF59_10150 PF09976 Tetratricopeptide repeat-like domain KAF59_10155 PF03129 Anticodon binding domain KAF59_10155 PF13393 Histidyl-tRNA synthetase KAF59_10160 PF04551 GcpE protein KAF59_10165 PF13464 Domain of unknown function (DUF4115) KAF59_10170 PF04055 Radical SAM superfamily KAF59_10175 PF00334 Nucleoside diphosphate kinase KAF59_10180 PF12404 Peptidase KAF59_10180 PF00883 Cytosol aminopeptidase family, catalytic domain KAF59_10185 PF04384 Iron-sulphur cluster assembly KAF59_10190 PF00111 2Fe-2S iron-sulfur cluster binding domain KAF59_10195 PF00012 Hsp70 protein KAF59_10200 PF00226 DnaJ domain KAF59_10200 PF07743 HSCB C-terminal oligomerisation domain KAF59_10205 PF01521 Iron-sulphur cluster biosynthesis KAF59_10210 PF01592 NifU-like N terminal domain KAF59_10215 PF00266 Aminotransferase class-V KAF59_10220 PF02082 Transcriptional regulator KAF59_10225 PF00588 SpoU rRNA Methylase family KAF59_10230 PF00459 Inositol monophosphatase family KAF59_10235 PF07549 SecD/SecF GG Motif KAF59_10235 PF02355 Protein export membrane protein KAF59_10240 PF13721 SecD export protein N-terminal TM region KAF59_10240 PF07549 SecD/SecF GG Motif KAF59_10240 PF02355 Protein export membrane protein KAF59_10245 PF02699 Preprotein translocase subunit KAF59_10250 PF01702 Queuine tRNA-ribosyltransferase KAF59_10255 PF02547 Queuosine biosynthesis protein KAF59_10260 PF00571 CBS domain KAF59_10265 PF00463 Isocitrate lyase family KAF59_10270 PF01274 Malate synthase KAF59_10275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_10275 PF03466 LysR substrate binding domain KAF59_10280 PF00578 AhpC/TSA family KAF59_10280 PF10417 C-terminal domain of 1-Cys peroxiredoxin KAF59_10285 PF03932 CutC family KAF59_10290 PF03976 Polyphosphate kinase 2 (PPK2) KAF59_10295 PF01895 PhoU domain KAF59_10300 PF00005 ABC transporter KAF59_10305 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_10310 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_10315 PF02503 Polyphosphate kinase middle domain KAF59_10315 PF13090 Polyphosphate kinase C-terminal domain 2 KAF59_10315 PF13089 Polyphosphate kinase N-terminal domain KAF59_10315 PF17941 Polyphosphate kinase C-terminal domain 1 KAF59_10320 PF02541 Ppx/GppA phosphatase family KAF59_10325 PF12849 PBP superfamily domain KAF59_10330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_10330 PF00512 His Kinase A (phospho-acceptor) domain KAF59_10330 PF11808 Phosphate regulon sensor protein PhoR KAF59_10330 PF00989 PAS fold KAF59_10335 PF00072 Response regulator receiver domain KAF59_10335 PF00486 Transcriptional regulatory protein, C terminal KAF59_10340 PF04381 Putative exonuclease, RdgC KAF59_10345 PF01136 Peptidase family U32 KAF59_10345 PF16325 Peptidase family U32 C-terminal domain KAF59_10350 PF00037 4Fe-4S binding domain KAF59_10355 PF00881 Nitroreductase family KAF59_10390 PF07724 AAA domain (Cdc48 subfamily) KAF59_10390 PF10431 C-terminal, D2-small domain, of ClpB protein KAF59_10390 PF00004 ATPase family associated with various cellular activities (AAA) KAF59_10390 PF02861 Clp amino terminal domain, pathogenicity island component KAF59_10390 PF17871 AAA lid domain KAF59_10395 PF02578 Multi-copper polyphenol oxidoreductase laccase KAF59_10400 PF01479 S4 domain KAF59_10400 PF00849 RNA pseudouridylate synthase KAF59_10405 PF13525 Outer membrane lipoprotein KAF59_10410 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KAF59_10415 PF01817 Chorismate mutase type II KAF59_10415 PF00800 Prephenate dehydratase KAF59_10420 PF13416 Bacterial extracellular solute-binding protein KAF59_10425 PF00990 Diguanylate cyclase, GGDEF domain KAF59_10425 PF00563 EAL domain KAF59_10430 PF01931 Protein of unknown function DUF84 KAF59_10435 PF01371 Trp repressor protein KAF59_10440 PF01464 Transglycosylase SLT domain KAF59_10440 PF14718 Soluble lytic murein transglycosylase L domain KAF59_10445 PF00005 ABC transporter KAF59_10445 PF12848 ABC transporter KAF59_10450 PF07238 PilZ domain KAF59_10455 PF01817 Chorismate mutase type II KAF59_10455 PF02153 Prephenate dehydrogenase KAF59_10460 PF00793 DAHP synthetase I family KAF59_10465 PF07694 5TMR of 5TMR-LYT KAF59_10465 PF06580 Histidine kinase KAF59_10470 PF00072 Response regulator receiver domain KAF59_10470 PF04397 LytTr DNA-binding domain KAF59_10475 PF00933 Glycosyl hydrolase family 3 N terminal domain KAF59_10480 PF03702 Anhydro-N-acetylmuramic acid kinase KAF59_10485 PF13580 SIS domain KAF59_10500 PF02554 Carbon starvation protein CstA KAF59_10505 PF02401 LytB protein KAF59_10510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KAF59_10515 PF01252 Signal peptidase (SPase) II KAF59_10520 PF08264 Anticodon-binding domain of tRNA KAF59_10520 PF00133 tRNA synthetases class I (I, L, M and V) KAF59_10520 PF06827 Zinc finger found in FPG and IleRS KAF59_10525 PF06574 FAD synthetase KAF59_10525 PF01687 Riboflavin kinase KAF59_10530 PF03023 Lipid II flippase MurJ KAF59_10535 PF01649 Ribosomal protein S20 KAF59_10540 PF01022 Bacterial regulatory protein, arsR family KAF59_10545 PF03466 LysR substrate binding domain KAF59_10545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_10550 PF02690 Na+/Pi-cotransporter KAF59_10555 PF00303 Thymidylate synthase KAF59_10560 PF01790 Prolipoprotein diacylglyceryl transferase KAF59_10565 PF01925 Sulfite exporter TauE/SafE KAF59_10570 PF01590 GAF domain KAF59_10570 PF05524 PEP-utilising enzyme, N-terminal KAF59_10570 PF00391 PEP-utilising enzyme, mobile domain KAF59_10570 PF02896 PEP-utilising enzyme, TIM barrel domain KAF59_10575 PF00293 NUDIX domain KAF59_10580 PF02976 DNA mismatch repair enzyme MutH KAF59_10585 PF00248 Aldo/keto reductase family KAF59_10595 PF00072 Response regulator receiver domain KAF59_10595 PF00158 Sigma-54 interaction domain KAF59_10595 PF02954 Bacterial regulatory protein, Fis family KAF59_10600 PF01336 OB-fold nucleic acid binding domain KAF59_10600 PF00152 tRNA synthetases class II (D, K and N) KAF59_10610 PF05525 Branched-chain amino acid transport protein KAF59_10615 PF05175 Methyltransferase small domain KAF59_10620 PF00270 DEAD/DEAH box helicase KAF59_10620 PF00271 Helicase conserved C-terminal domain KAF59_10625 PF00009 Elongation factor Tu GTP binding domain KAF59_10625 PF03144 Elongation factor Tu domain 2 KAF59_10625 PF16658 Class II release factor RF3, C-terminal domain KAF59_10630 PF01381 Helix-turn-helix KAF59_10630 PF00717 Peptidase S24-like KAF59_10675 PF06122 Conjugative relaxosome accessory transposon protein KAF59_10685 PF01627 Hpt domain KAF59_10685 PF00072 Response regulator receiver domain KAF59_10685 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KAF59_10685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_10685 PF00512 His Kinase A (phospho-acceptor) domain KAF59_10685 PF00672 HAMP domain KAF59_10690 PF00990 Diguanylate cyclase, GGDEF domain KAF59_10690 PF00072 Response regulator receiver domain KAF59_10710 PF04002 RadC-like JAB domain KAF59_10715 PF00092 von Willebrand factor type A domain KAF59_10735 PF07728 AAA domain (dynein-related subfamily) KAF59_10755 PF00436 Single-strand binding protein family KAF59_10770 PF04231 Endonuclease I KAF59_10790 PF06986 Type-1V conjugative transfer system mating pair stabilisation KAF59_10795 PF06834 TraU protein KAF59_10805 PF10502 Signal peptidase, peptidase S26 KAF59_10820 PF10411 Disulfide bond isomerase protein N-terminus KAF59_10820 PF13098 Thioredoxin-like domain KAF59_10865 PF05973 Phage derived protein Gp49-like (DUF891) KAF59_10950 PF02811 PHP domain KAF59_10950 PF11490 DNA polymerase III polC-type N-terminus II KAF59_10950 PF07733 Bacterial DNA polymerase III alpha NTPase domain KAF59_10950 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KAF59_10950 PF14579 Helix-hairpin-helix motif KAF59_10950 PF00929 Exonuclease KAF59_10960 PF00717 Peptidase S24-like KAF59_11010 PF03707 Bacterial signalling protein N terminal repeat KAF59_11010 PF00990 Diguanylate cyclase, GGDEF domain KAF59_11010 PF00563 EAL domain KAF59_11025 PF13508 Acetyltransferase (GNAT) domain KAF59_11030 PF02036 SCP-2 sterol transfer family KAF59_11035 PF00990 Diguanylate cyclase, GGDEF domain KAF59_11035 PF00563 EAL domain KAF59_11035 PF03707 Bacterial signalling protein N terminal repeat KAF59_11040 PF01136 Peptidase family U32 KAF59_11045 PF01136 Peptidase family U32 KAF59_11060 PF07719 Tetratricopeptide repeat KAF59_11060 PF13181 Tetratricopeptide repeat KAF59_11065 PF00575 S1 RNA binding domain KAF59_11065 PF01138 3' exoribonuclease family, domain 1 KAF59_11065 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KAF59_11065 PF00013 KH domain KAF59_11065 PF03725 3' exoribonuclease family, domain 2 KAF59_11070 PF00312 Ribosomal protein S15 KAF59_11075 PF09157 Pseudouridine synthase II TruB, C-terminal KAF59_11075 PF01509 TruB family pseudouridylate synthase (N terminal domain) KAF59_11075 PF16198 tRNA pseudouridylate synthase B C-terminal domain KAF59_11080 PF02033 Ribosome-binding factor A KAF59_11085 PF04760 Translation initiation factor IF-2, N-terminal region KAF59_11085 PF08364 Bacterial translation initiation factor IF-2 associated region KAF59_11085 PF00009 Elongation factor Tu GTP binding domain KAF59_11085 PF11987 Translation-initiation factor 2 KAF59_11090 PF00575 S1 RNA binding domain KAF59_11090 PF08529 NusA N-terminal domain KAF59_11090 PF13184 NusA-like KH domain KAF59_11095 PF02576 RimP N-terminal domain KAF59_11095 PF17384 RimP C-terminal SH3 domain KAF59_11110 PF03840 Preprotein translocase SecG subunit KAF59_11115 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KAF59_11115 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KAF59_11115 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KAF59_11115 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KAF59_11120 PF00809 Pterin binding enzyme KAF59_11125 PF06480 FtsH Extracellular KAF59_11125 PF17862 AAA+ lid domain KAF59_11125 PF00004 ATPase family associated with various cellular activities (AAA) KAF59_11125 PF01434 Peptidase family M41 KAF59_11130 PF01728 FtsJ-like methyltransferase KAF59_11135 PF01985 CRS1 / YhbY (CRM) domain KAF59_11140 PF01272 Transcription elongation factor, GreA/GreB, C-term KAF59_11140 PF03449 Transcription elongation factor, N-terminal KAF59_11145 PF13609 Gram-negative porin KAF59_11150 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family KAF59_11155 PF01479 S4 domain KAF59_11155 PF00579 tRNA synthetases class I (W and Y) KAF59_11160 PF01551 Peptidase family M23 KAF59_11160 PF04225 Opacity-associated protein A LysM-like domain KAF59_11165 PF00873 AcrB/AcrD/AcrF family KAF59_11175 PF01521 Iron-sulphur cluster biosynthesis KAF59_11180 PF00202 Aminotransferase class-III KAF59_11185 PF01594 AI-2E family transporter KAF59_11190 PF05175 Methyltransferase small domain KAF59_11190 PF08468 Methyltransferase small domain N-terminal KAF59_11195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_11195 PF00512 His Kinase A (phospho-acceptor) domain KAF59_11195 PF09308 LuxQ, periplasmic KAF59_11195 PF00072 Response regulator receiver domain KAF59_11200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KAF59_11205 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_11210 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_11210 PF12911 N-terminal TM domain of oligopeptide transport permease C KAF59_11215 PF00005 ABC transporter KAF59_11215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KAF59_11220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KAF59_11220 PF00005 ABC transporter KAF59_11230 PF01869 BadF/BadG/BcrA/BcrD ATPase family KAF59_11235 PF00728 Glycosyl hydrolase family 20, catalytic domain KAF59_11235 PF02838 Glycosyl hydrolase family 20, domain 2 KAF59_11240 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain KAF59_11240 PF06165 Glycosyltransferase family 36 KAF59_11245 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KAF59_11245 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KAF59_11245 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KAF59_11245 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KAF59_11250 PF00005 ABC transporter KAF59_11250 PF08402 TOBE domain KAF59_11260 PF13416 Bacterial extracellular solute-binding protein KAF59_11265 PF00909 Ammonium Transporter Family KAF59_11270 PF00543 Nitrogen regulatory protein P-II KAF59_11275 PF06062 Uncharacterised protein family (UPF0231) KAF59_11280 PF00330 Aconitase family (aconitate hydratase) KAF59_11280 PF06434 Aconitate hydratase 2 N-terminus KAF59_11280 PF11791 Aconitate B N-terminal domain KAF59_11285 PF01734 Patatin-like phospholipase KAF59_11290 PF00912 Transglycosylase KAF59_11290 PF00905 Penicillin binding protein transpeptidase domain KAF59_11290 PF14814 Bifunctional transglycosylase second domain KAF59_11295 PF08482 ATP-dependent helicase C-terminal KAF59_11295 PF00271 Helicase conserved C-terminal domain KAF59_11295 PF00270 DEAD/DEAH box helicase KAF59_11295 PF04408 Helicase associated domain (HA2) KAF59_11305 PF03749 Sugar fermentation stimulation protein RE domain KAF59_11305 PF17746 SfsA N-terminal OB domain KAF59_11310 PF01258 Prokaryotic dksA/traR C4-type zinc finger KAF59_11315 PF00749 tRNA synthetases class I (E and Q), catalytic domain KAF59_11320 PF12627 Probable RNA and SrmB- binding site of polymerase A KAF59_11320 PF01743 Poly A polymerase head domain KAF59_11320 PF12626 Polymerase A arginine-rich C-terminus KAF59_11325 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KAF59_11330 PF02548 Ketopantoate hydroxymethyltransferase KAF59_11335 PF02569 Pantoate-beta-alanine ligase KAF59_11340 PF01061 ABC-2 type transporter KAF59_11345 PF00005 ABC transporter KAF59_11350 PF01740 STAS domain KAF59_11350 PF00916 Sulfate permease family KAF59_11355 PF00484 Carbonic anhydrase KAF59_11360 PF00156 Phosphoribosyl transferase domain KAF59_11365 PF00440 Bacterial regulatory proteins, tetR family KAF59_11370 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KAF59_11375 PF04348 LppC putative lipoprotein KAF59_11380 PF02021 Uncharacterised protein family UPF0102 KAF59_11385 PF13580 SIS domain KAF59_11390 PF04972 BON domain KAF59_11395 PF04386 Stringent starvation protein B KAF59_11400 PF00043 Glutathione S-transferase, C-terminal domain KAF59_11400 PF02798 Glutathione S-transferase, N-terminal domain KAF59_11405 PF02167 Cytochrome C1 family KAF59_11410 PF00032 Cytochrome b(C-terminal)/b6/petD KAF59_11410 PF00033 Cytochrome b/b6/petB KAF59_11415 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal KAF59_11415 PF00355 Rieske [2Fe-2S] domain KAF59_11420 PF00380 Ribosomal protein S9/S16 KAF59_11425 PF00572 Ribosomal protein L13 KAF59_11430 PF03969 AFG1-like ATPase KAF59_11440 PF00595 PDZ domain KAF59_11445 PF13180 PDZ domain KAF59_11450 PF01245 Ribosomal protein L19 KAF59_11455 PF01746 tRNA (Guanine-1)-methyltransferase KAF59_11460 PF01782 RimM N-terminal domain KAF59_11460 PF05239 PRC-barrel domain KAF59_11465 PF00886 Ribosomal protein S16 KAF59_11470 PF02881 SRP54-type protein, helical bundle domain KAF59_11470 PF00448 SRP54-type protein, GTPase domain KAF59_11470 PF02978 Signal peptide binding domain KAF59_11475 PF01578 Cytochrome C assembly protein KAF59_11480 PF03471 Transporter associated domain KAF59_11480 PF01595 Cyclin M transmembrane N-terminal domain KAF59_11480 PF00571 CBS domain KAF59_11485 PF02664 S-Ribosylhomocysteinase (LuxS) KAF59_11490 PF04262 Glutamate-cysteine ligase KAF59_11495 PF00675 Insulinase (Peptidase family M16) KAF59_11495 PF05193 Peptidase M16 inactive domain KAF59_11500 PF09335 SNARE associated Golgi protein KAF59_11505 PF00107 Zinc-binding dehydrogenase KAF59_11505 PF08240 Alcohol dehydrogenase GroES-like domain KAF59_11510 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit KAF59_11520 PF04277 Oxaloacetate decarboxylase, gamma chain KAF59_11565 PF02599 Global regulator protein family KAF59_11570 PF13840 ACT domain KAF59_11570 PF00696 Amino acid kinase family KAF59_11570 PF01842 ACT domain KAF59_11575 PF02272 DHHA1 domain KAF59_11575 PF01411 tRNA synthetases class II (A) KAF59_11575 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KAF59_11580 PF02631 RecX family KAF59_11585 PF00154 recA bacterial DNA recombination protein KAF59_11590 PF02464 Competence-damaged protein KAF59_11595 PF12857 TOBE-like domain KAF59_11595 PF00005 ABC transporter KAF59_11600 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_11605 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_11615 PF00291 Pyridoxal-phosphate dependent enzyme KAF59_11620 PF05188 MutS domain II KAF59_11620 PF05190 MutS family domain IV KAF59_11620 PF00488 MutS domain V KAF59_11620 PF01624 MutS domain I KAF59_11620 PF05192 MutS domain III KAF59_11625 PF00140 Sigma-70 factor, region 1.2 KAF59_11625 PF04542 Sigma-70 region 2 KAF59_11625 PF04545 Sigma-70, region 4 KAF59_11625 PF04539 Sigma-70 region 3 KAF59_11630 PF01476 LysM domain KAF59_11630 PF01551 Peptidase family M23 KAF59_11640 PF01975 Survival protein SurE KAF59_11645 PF01142 tRNA pseudouridine synthase D (TruD) KAF59_11650 PF02542 YgbB family KAF59_11655 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KAF59_11660 PF04977 Septum formation initiator KAF59_11665 PF02673 Bacitracin resistance protein BacA KAF59_11670 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KAF59_11675 PF02152 Dihydroneopterin aldolase KAF59_11680 PF02660 Glycerol-3-phosphate acyltransferase KAF59_11685 PF00561 alpha/beta hydrolase fold KAF59_11690 PF00814 Glycoprotease family KAF59_11695 PF01165 Ribosomal protein S21 KAF59_11700 PF09424 Yqey-like protein KAF59_11705 PF01807 CHC2 zinc finger KAF59_11705 PF08278 DNA primase DnaG DnaB-binding KAF59_11705 PF10410 DnaB-helicase binding domain of primase KAF59_11705 PF08275 DNA primase catalytic core, N-terminal domain KAF59_11710 PF04539 Sigma-70 region 3 KAF59_11710 PF04542 Sigma-70 region 2 KAF59_11710 PF04545 Sigma-70, region 4 KAF59_11710 PF04546 Sigma-70, non-essential region KAF59_11710 PF03979 Sigma-70 factor, region 1.1 KAF59_11710 PF00140 Sigma-70 factor, region 1.2 KAF59_11720 PF13356 Arm DNA-binding domain KAF59_11720 PF00589 Phage integrase family KAF59_11725 PF00563 EAL domain KAF59_11725 PF08668 HDOD domain KAF59_11730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_11730 PF17200 Single Cache domain 2 KAF59_11730 PF00672 HAMP domain KAF59_11735 PF12833 Helix-turn-helix domain KAF59_11740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_11740 PF08447 PAS fold KAF59_11750 PF04002 RadC-like JAB domain KAF59_11780 PF01476 LysM domain KAF59_11780 PF08525 Opacity-associated protein A N-terminal motif KAF59_11780 PF01551 Peptidase family M23 KAF59_11790 PF07963 Prokaryotic N-terminal methylation motif KAF59_11790 PF00114 Pilin (bacterial filament) KAF59_11805 PF00075 RNase H KAF59_11855 PF03480 Bacterial extracellular solute-binding protein, family 7 KAF59_11860 PF01380 SIS domain KAF59_11865 PF08220 DeoR-like helix-turn-helix domain KAF59_11865 PF00455 DeoR C terminal sensor domain KAF59_11870 PF00224 Pyruvate kinase, barrel domain KAF59_11870 PF02887 Pyruvate kinase, alpha/beta domain KAF59_11875 PF04402 Protein of unknown function (DUF541) KAF59_11880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_11880 PF03466 LysR substrate binding domain KAF59_11885 PF01810 LysE type translocator KAF59_11890 PF05552 Conserved TM helix KAF59_11890 PF00924 Mechanosensitive ion channel KAF59_11895 PF01116 Fructose-bisphosphate aldolase class-II KAF59_11900 PF00162 Phosphoglycerate kinase KAF59_11905 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KAF59_11905 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KAF59_11910 PF00593 TonB dependent receptor KAF59_11910 PF07715 TonB-dependent Receptor Plug Domain KAF59_11915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_11915 PF03466 LysR substrate binding domain KAF59_11920 PF02780 Transketolase, C-terminal domain KAF59_11920 PF00456 Transketolase, thiamine diphosphate binding domain KAF59_11920 PF02779 Transketolase, pyrimidine binding domain KAF59_11925 PF02773 S-adenosylmethionine synthetase, C-terminal domain KAF59_11925 PF02772 S-adenosylmethionine synthetase, central domain KAF59_11925 PF00438 S-adenosylmethionine synthetase, N-terminal domain KAF59_11930 PF10263 SprT-like family KAF59_11930 PF17283 SprT-like zinc ribbon domain KAF59_11935 PF04231 Endonuclease I KAF59_11940 PF04452 RNA methyltransferase KAF59_11945 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KAF59_11945 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KAF59_11950 PF02622 Uncharacterized ACR, COG1678 KAF59_11955 PF03652 Holliday junction resolvase KAF59_11960 PF01479 S4 domain KAF59_11960 PF00579 tRNA synthetases class I (W and Y) KAF59_11970 PF00437 Type II/IV secretion system protein KAF59_11975 PF00437 Type II/IV secretion system protein KAF59_11980 PF01168 Alanine racemase, N-terminal domain KAF59_11985 PF03807 NADP oxidoreductase coenzyme F420-dependent KAF59_11985 PF14748 Pyrroline-5-carboxylate reductase dimerisation KAF59_11990 PF02325 YGGT family KAF59_11995 PF02594 Uncharacterised ACR, YggU family COG1872 KAF59_12005 PF01725 Ham1 family KAF59_12010 PF04055 Radical SAM superfamily KAF59_12010 PF06969 HemN C-terminal domain KAF59_12015 PF04960 Glutaminase KAF59_12020 PF02390 Putative methyltransferase KAF59_12025 PF14815 NUDIX domain KAF59_12025 PF00730 HhH-GPD superfamily base excision DNA repair protein KAF59_12025 PF10576 Iron-sulfur binding domain of endonuclease III KAF59_12025 PF00633 Helix-hairpin-helix motif KAF59_12030 PF04362 Bacterial Fe(2+) trafficking KAF59_12035 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain KAF59_12035 PF01464 Transglycosylase SLT domain KAF59_12060 PF12729 Four helix bundle sensory module for signal transduction KAF59_12060 PF00672 HAMP domain KAF59_12060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_12090 PF05099 Tellurite resistance protein TerB KAF59_12090 PF00226 DnaJ domain KAF59_12095 PF03968 OstA-like protein KAF59_12095 PF04453 LPS transport system D KAF59_12100 PF09312 SurA N-terminal domain KAF59_12105 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KAF59_12110 PF00398 Ribosomal RNA adenine dimethylase KAF59_12115 PF04379 ApaG domain KAF59_12120 PF00149 Calcineurin-like phosphoesterase KAF59_12125 PF00186 Dihydrofolate reductase KAF59_12130 PF12821 Threonine/Serine exporter, ThrE KAF59_12135 PF06738 Putative threonine/serine exporter KAF59_12140 PF01018 GTP1/OBG KAF59_12140 PF01926 50S ribosome-binding GTPase KAF59_12145 PF01016 Ribosomal L27 protein KAF59_12150 PF00829 Ribosomal prokaryotic L21 protein KAF59_12155 PF00348 Polyprenyl synthetase KAF59_12165 PF00056 lactate/malate dehydrogenase, NAD binding domain KAF59_12165 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KAF59_12170 PF01316 Arginine repressor, DNA binding domain KAF59_12170 PF02863 Arginine repressor, C-terminal domain KAF59_12175 PF16868 NMT1-like family KAF59_12185 PF00582 Universal stress protein family KAF59_12200 PF06877 Regulator of ribonuclease activity B KAF59_12210 PF01523 Putative modulator of DNA gyrase KAF59_12215 PF00795 Carbon-nitrogen hydrolase KAF59_12220 PF13502 AsmA-like C-terminal region KAF59_12220 PF13116 Protein of unknown function KAF59_12225 PF10150 Ribonuclease E/G family KAF59_12225 PF00575 S1 RNA binding domain KAF59_12230 PF02545 Maf-like protein KAF59_12235 PF04093 rod shape-determining protein MreD KAF59_12240 PF04085 rod shape-determining protein MreC KAF59_12275 PF07963 Prokaryotic N-terminal methylation motif KAF59_12280 PF07963 Prokaryotic N-terminal methylation motif KAF59_12290 PF00482 Type II secretion system (T2SS), protein F KAF59_12295 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KAF59_12295 PF00437 Type II/IV secretion system protein KAF59_12305 PF13401 AAA domain KAF59_12305 PF01471 Putative peptidoglycan binding domain KAF59_12310 PF00263 Bacterial type II and III secretion system protein KAF59_12310 PF11741 AMIN domain KAF59_12310 PF07660 Secretin and TonB N terminus short domain KAF59_12310 PF03958 Bacterial type II/III secretion system short domain KAF59_12330 PF00563 EAL domain KAF59_12330 PF17157 Gammaproteobacterial periplasmic sensor domain KAF59_12330 PF00990 Diguanylate cyclase, GGDEF domain KAF59_12335 PF00436 Single-strand binding protein family KAF59_12340 PF00196 Bacterial regulatory proteins, luxR family KAF59_12345 PF00483 Nucleotidyl transferase KAF59_12350 PF00005 ABC transporter KAF59_12350 PF17755 UvrA DNA-binding domain KAF59_12350 PF17760 UvrA interaction domain KAF59_12360 PF00266 Aminotransferase class-V KAF59_12365 PF00696 Amino acid kinase family KAF59_12365 PF01842 ACT domain KAF59_12370 PF02574 Homocysteine S-methyltransferase KAF59_12370 PF00809 Pterin binding enzyme KAF59_12370 PF02965 Vitamin B12 dependent methionine synthase, activation domain KAF59_12370 PF02310 B12 binding domain KAF59_12370 PF02607 B12 binding domain KAF59_12375 PF00999 Sodium/hydrogen exchanger family KAF59_12440 PF01507 Phosphoadenosine phosphosulfate reductase family KAF59_12445 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KAF59_12445 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KAF59_12450 PF00667 FAD binding domain KAF59_12450 PF00258 Flavodoxin KAF59_12450 PF00175 Oxidoreductase NAD-binding domain KAF59_12470 PF09583 Phage shock protein G (Phageshock_PspG) KAF59_12475 PF01207 Dihydrouridine synthase (Dus) KAF59_12480 PF01475 Ferric uptake regulator family KAF59_12490 PF12706 Beta-lactamase superfamily domain KAF59_12495 PF00342 Phosphoglucose isomerase KAF59_12500 PF01894 Uncharacterised protein family UPF0047 KAF59_12505 PF00842 Alanine racemase, C-terminal domain KAF59_12505 PF01168 Alanine racemase, N-terminal domain KAF59_12510 PF00772 DnaB-like helicase N terminal domain KAF59_12510 PF03796 DnaB-like helicase C terminal domain KAF59_12520 PF03948 Ribosomal protein L9, C-terminal domain KAF59_12520 PF01281 Ribosomal protein L9, N-terminal domain KAF59_12525 PF01084 Ribosomal protein S18 KAF59_12530 PF00436 Single-strand binding protein family KAF59_12535 PF01250 Ribosomal protein S6 KAF59_12540 PF00210 Ferritin-like domain KAF59_12545 PF04324 BFD-like [2Fe-2S] binding domain KAF59_12550 PF03144 Elongation factor Tu domain 2 KAF59_12550 PF03143 Elongation factor Tu C-terminal domain KAF59_12550 PF00009 Elongation factor Tu GTP binding domain KAF59_12555 PF03144 Elongation factor Tu domain 2 KAF59_12555 PF00679 Elongation factor G C-terminus KAF59_12555 PF14492 Elongation Factor G, domain II KAF59_12555 PF03764 Elongation factor G, domain IV KAF59_12555 PF00009 Elongation factor Tu GTP binding domain KAF59_12560 PF00177 Ribosomal protein S7p/S5e KAF59_12565 PF00164 Ribosomal protein S12/S23 KAF59_12575 PF02635 DsrE/DsrF-like family KAF59_12580 PF02635 DsrE/DsrF-like family KAF59_12585 PF13309 HTH domain KAF59_12585 PF08348 YheO-like PAS domain KAF59_12590 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KAF59_12590 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KAF59_12600 PF04102 SlyX KAF59_12605 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) KAF59_12610 PF01145 SPFH domain / Band 7 family KAF59_12615 PF01145 SPFH domain / Band 7 family KAF59_12615 PF12221 Bacterial membrane protein N terminal KAF59_12620 PF01926 50S ribosome-binding GTPase KAF59_12620 PF13167 GTP-binding GTPase N-terminal KAF59_12620 PF16360 GTP-binding GTPase Middle Region KAF59_12625 PF17209 Hfq protein KAF59_12635 PF01119 DNA mismatch repair protein, C-terminal domain KAF59_12635 PF08676 MutL C terminal dimerisation domain KAF59_12640 PF01520 N-acetylmuramoyl-L-alanine amidase KAF59_12645 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KAF59_12650 PF08331 Domain of unknown function (DUF1730) KAF59_12695 PF00929 Exonuclease KAF59_12700 PF03193 RsgA GTPase KAF59_12705 PF02666 Phosphatidylserine decarboxylase KAF59_12710 PF00939 Sodium:sulfate symporter transmembrane region KAF59_12720 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KAF59_12720 PF01676 Metalloenzyme superfamily KAF59_12725 PF01551 Peptidase family M23 KAF59_12735 PF08360 QacR-like protein, C-terminal region KAF59_12735 PF00440 Bacterial regulatory proteins, tetR family KAF59_12740 PF01208 Uroporphyrinogen decarboxylase (URO-D) KAF59_12745 PF00293 NUDIX domain KAF59_12745 PF09297 NADH pyrophosphatase zinc ribbon domain KAF59_12750 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ KAF59_12755 PF04997 RNA polymerase Rpb1, domain 1 KAF59_12755 PF00623 RNA polymerase Rpb1, domain 2 KAF59_12755 PF04983 RNA polymerase Rpb1, domain 3 KAF59_12755 PF05000 RNA polymerase Rpb1, domain 4 KAF59_12755 PF04998 RNA polymerase Rpb1, domain 5 KAF59_12760 PF10385 RNA polymerase beta subunit external 1 domain KAF59_12760 PF04565 RNA polymerase Rpb2, domain 3 KAF59_12760 PF00562 RNA polymerase Rpb2, domain 6 KAF59_12760 PF04563 RNA polymerase beta subunit KAF59_12760 PF04560 RNA polymerase Rpb2, domain 7 KAF59_12760 PF04561 RNA polymerase Rpb2, domain 2 KAF59_12765 PF00542 Ribosomal protein L7/L12 C-terminal domain KAF59_12765 PF16320 Ribosomal protein L7/L12 dimerisation domain KAF59_12770 PF00466 Ribosomal protein L10 KAF59_12775 PF00687 Ribosomal protein L1p/L10e family KAF59_12780 PF03946 Ribosomal protein L11, N-terminal domain KAF59_12780 PF00298 Ribosomal protein L11, RNA binding domain KAF59_12785 PF00467 KOW motif KAF59_12785 PF02357 Transcription termination factor nusG KAF59_12790 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KAF59_12795 PF03143 Elongation factor Tu C-terminal domain KAF59_12795 PF03144 Elongation factor Tu domain 2 KAF59_12795 PF00009 Elongation factor Tu GTP binding domain KAF59_12820 PF00485 Phosphoribulokinase / Uridine kinase family KAF59_12825 PF03099 Biotin/lipoate A/B protein ligase family KAF59_12825 PF02237 Biotin protein ligase C terminal domain KAF59_12825 PF08279 HTH domain KAF59_12830 PF01565 FAD binding domain KAF59_12830 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KAF59_12840 PF13091 PLD-like domain KAF59_12875 PF00175 Oxidoreductase NAD-binding domain KAF59_12880 PF00111 2Fe-2S iron-sulfur cluster binding domain KAF59_12880 PF00970 Oxidoreductase FAD-binding domain KAF59_12880 PF00175 Oxidoreductase NAD-binding domain KAF59_12885 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase KAF59_12895 PF07497 Rho termination factor, RNA-binding domain KAF59_12895 PF07498 Rho termination factor, N-terminal domain KAF59_12895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KAF59_12900 PF00085 Thioredoxin KAF59_12905 PF00271 Helicase conserved C-terminal domain KAF59_12905 PF00270 DEAD/DEAH box helicase KAF59_12910 PF02541 Ppx/GppA phosphatase family KAF59_12915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_12915 PF09456 RcsC Alpha-Beta-Loop (ABL) KAF59_12915 PF00072 Response regulator receiver domain KAF59_12915 PF00512 His Kinase A (phospho-acceptor) domain KAF59_12920 PF12832 MFS_1 like family KAF59_12935 PF13193 AMP-binding enzyme C-terminal domain KAF59_12935 PF00501 AMP-binding enzyme KAF59_12935 PF16177 Acetyl-coenzyme A synthetase N-terminus KAF59_12940 PF01220 Dehydroquinase class II KAF59_12945 PF00364 Biotin-requiring enzyme KAF59_12950 PF02785 Biotin carboxylase C-terminal domain KAF59_12950 PF00289 Biotin carboxylase, N-terminal domain KAF59_12950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KAF59_12960 PF01207 Dihydrouridine synthase (Dus) KAF59_12965 PF02954 Bacterial regulatory protein, Fis family KAF59_12970 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KAF59_12970 PF00356 Bacterial regulatory proteins, lacI family KAF59_12975 PF00920 Dehydratase family KAF59_12980 PF01202 Shikimate kinase KAF59_12985 PF02447 GntP family permease KAF59_12990 PF01081 KDPG and KHG aldolase KAF59_12995 PF07715 TonB-dependent Receptor Plug Domain KAF59_12995 PF00593 TonB dependent receptor KAF59_13010 PF17200 Single Cache domain 2 KAF59_13010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_13010 PF00672 HAMP domain KAF59_13015 PF01276 Orn/Lys/Arg decarboxylase, major domain KAF59_13015 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KAF59_13015 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain KAF59_13020 PF13520 Amino acid permease KAF59_13025 PF18500 CadC C-terminal domain 1 KAF59_13025 PF00486 Transcriptional regulatory protein, C terminal KAF59_13030 PF13411 MerR HTH family regulatory protein KAF59_13040 PF01808 AICARFT/IMPCHase bienzyme KAF59_13040 PF02142 MGS-like domain KAF59_13045 PF02844 Phosphoribosylglycinamide synthetase, N domain KAF59_13045 PF02843 Phosphoribosylglycinamide synthetase, C domain KAF59_13045 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KAF59_13055 PF00216 Bacterial DNA-binding protein KAF59_13060 PF00571 CBS domain KAF59_13060 PF01595 Cyclin M transmembrane N-terminal domain KAF59_13065 PF04222 Protein of unknown function (DUF416) KAF59_13070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KAF59_13075 PF00924 Mechanosensitive ion channel KAF59_13090 PF10996 Beta-Casp domain KAF59_13090 PF00753 Metallo-beta-lactamase superfamily KAF59_13090 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KAF59_13095 PF02719 Polysaccharide biosynthesis protein KAF59_13100 PF01370 NAD dependent epimerase/dehydratase family KAF59_13105 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KAF59_13105 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KAF59_13105 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KAF59_13110 PF02397 Bacterial sugar transferase KAF59_13115 PF01370 NAD dependent epimerase/dehydratase family KAF59_13120 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KAF59_13120 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KAF59_13120 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KAF59_13120 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KAF59_13125 PF01050 Mannose-6-phosphate isomerase KAF59_13125 PF00483 Nucleotidyl transferase KAF59_13130 PF13477 Glycosyl transferase 4-like KAF59_13130 PF00534 Glycosyl transferases group 1 KAF59_13135 PF00733 Asparagine synthase KAF59_13135 PF13537 Glutamine amidotransferase domain KAF59_13145 PF00535 Glycosyl transferase family 2 KAF59_13150 PF00535 Glycosyl transferase family 2 KAF59_13175 PF00293 NUDIX domain KAF59_13180 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KAF59_13185 PF01370 NAD dependent epimerase/dehydratase family KAF59_13190 PF16363 GDP-mannose 4,6 dehydratase KAF59_13195 PF13808 DDE_Tnp_1-associated KAF59_13195 PF01609 Transposase DDE domain KAF59_13220 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF KAF59_13230 PF06082 Exopolysaccharide biosynthesis protein YbjH KAF59_13240 PF01370 NAD dependent epimerase/dehydratase family KAF59_13245 PF00457 Glycosyl hydrolases family 11 KAF59_13245 PF01522 Polysaccharide deacetylase KAF59_13260 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KAF59_13270 PF04488 Glycosyltransferase sugar-binding region containing DXD motif KAF59_13275 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KAF59_13310 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KAF59_13315 PF00535 Glycosyl transferase family 2 KAF59_13320 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KAF59_13325 PF01467 Cytidylyltransferase-like KAF59_13330 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KAF59_13330 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KAF59_13330 PF06827 Zinc finger found in FPG and IleRS KAF59_13340 PF00471 Ribosomal protein L33 KAF59_13345 PF00830 Ribosomal L28 family KAF59_13350 PF04002 RadC-like JAB domain KAF59_13355 PF00672 HAMP domain KAF59_13355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_13360 PF02441 Flavoprotein KAF59_13360 PF04127 DNA / pantothenate metabolism flavoprotein KAF59_13370 PF00440 Bacterial regulatory proteins, tetR family KAF59_13375 PF03279 Bacterial lipid A biosynthesis acyltransferase KAF59_13380 PF03279 Bacterial lipid A biosynthesis acyltransferase KAF59_13385 PF00156 Phosphoribosyl transferase domain KAF59_13390 PF01138 3' exoribonuclease family, domain 1 KAF59_13390 PF03725 3' exoribonuclease family, domain 2 KAF59_13395 PF08340 Domain of unknown function (DUF1732) KAF59_13395 PF03755 YicC-like family, N-terminal region KAF59_13400 PF03350 Uncharacterized protein family, UPF0114 KAF59_13405 PF02378 Phosphotransferase system, EIIC KAF59_13405 PF00367 phosphotransferase system, EIIB KAF59_13410 PF13580 SIS domain KAF59_13415 PF01418 Helix-turn-helix domain, rpiR family KAF59_13415 PF01380 SIS domain KAF59_13420 PF01032 FecCD transport family KAF59_13425 PF01497 Periplasmic binding protein KAF59_13430 PF00005 ABC transporter KAF59_13435 PF00593 TonB dependent receptor KAF59_13435 PF07715 TonB-dependent Receptor Plug Domain KAF59_13440 PF00005 ABC transporter KAF59_13440 PF00664 ABC transporter transmembrane region KAF59_13455 PF00570 HRDC domain KAF59_13455 PF16124 RecQ zinc-binding KAF59_13455 PF09382 RQC domain KAF59_13455 PF00270 DEAD/DEAH box helicase KAF59_13455 PF00271 Helicase conserved C-terminal domain KAF59_13460 PF00892 EamA-like transporter family KAF59_13470 PF12833 Helix-turn-helix domain KAF59_13475 PF01810 LysE type translocator KAF59_13480 PF00580 UvrD/REP helicase N-terminal domain KAF59_13480 PF13361 UvrD-like helicase C-terminal domain KAF59_13485 PF01432 Peptidase family M3 KAF59_13490 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KAF59_13495 PF07992 Pyridine nucleotide-disulphide oxidoreductase KAF59_13495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KAF59_13535 PF01734 Patatin-like phospholipase KAF59_13560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KAF59_13570 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_13570 PF12911 N-terminal TM domain of oligopeptide transport permease C KAF59_13575 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_13580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KAF59_13585 PF00005 ABC transporter KAF59_13585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KAF59_13620 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KAF59_13625 PF00580 UvrD/REP helicase N-terminal domain KAF59_13625 PF13361 UvrD-like helicase C-terminal domain KAF59_13630 PF00440 Bacterial regulatory proteins, tetR family KAF59_13635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KAF59_13640 PF00873 AcrB/AcrD/AcrF family KAF59_13645 PF04380 Membrane fusogenic activity KAF59_13650 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KAF59_13650 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KAF59_13655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_13655 PF03466 LysR substrate binding domain KAF59_13700 PF12724 Flavodoxin domain KAF59_13705 PF02386 Cation transport protein KAF59_13710 PF01205 Uncharacterized protein family UPF0029 KAF59_13710 PF09186 Domain of unknown function (DUF1949) KAF59_13715 PF00378 Enoyl-CoA hydratase/isomerase KAF59_13715 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KAF59_13715 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KAF59_13720 PF00108 Thiolase, N-terminal domain KAF59_13720 PF02803 Thiolase, C-terminal domain KAF59_13725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_13725 PF03466 LysR substrate binding domain KAF59_13730 PF07690 Major Facilitator Superfamily KAF59_13735 PF00132 Bacterial transferase hexapeptide (six repeats) KAF59_13735 PF12804 MobA-like NTP transferase domain KAF59_13740 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KAF59_13740 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KAF59_13745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KAF59_13745 PF02874 ATP synthase alpha/beta family, beta-barrel domain KAF59_13750 PF00231 ATP synthase KAF59_13755 PF02874 ATP synthase alpha/beta family, beta-barrel domain KAF59_13755 PF00306 ATP synthase alpha/beta chain, C terminal domain KAF59_13755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KAF59_13760 PF00213 ATP synthase delta (OSCP) subunit KAF59_13765 PF00430 ATP synthase B/B' CF(0) KAF59_13770 PF00137 ATP synthase subunit C KAF59_13775 PF00119 ATP synthase A chain KAF59_13780 PF03899 ATP synthase I chain KAF59_13785 PF17762 HTH domain found in ParB protein KAF59_13785 PF02195 ParB-like nuclease domain KAF59_13790 PF13614 AAA domain KAF59_13795 PF02527 rRNA small subunit methyltransferase G KAF59_13800 PF13932 GidA associated domain KAF59_13800 PF01134 Glucose inhibited division protein A KAF59_13805 PF00258 Flavodoxin KAF59_13810 PF10396 GTP-binding protein TrmE N-terminus KAF59_13810 PF12631 MnmE helical domain KAF59_13810 PF01926 50S ribosome-binding GTPase KAF59_13815 PF14849 YidC periplasmic domain KAF59_13815 PF02096 60Kd inner membrane protein KAF59_13820 PF01809 Putative membrane protein insertion efficiency factor KAF59_13825 PF00825 Ribonuclease P KAF59_13830 PF00468 Ribosomal protein L34 KAF59_13835 PF00005 ABC transporter KAF59_13840 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_13845 PF00497 Bacterial extracellular solute-binding proteins, family 3 KAF59_13850 PF08775 ParB family KAF59_13850 PF02195 ParB-like nuclease domain KAF59_13855 PF13614 AAA domain KAF59_13855 PF18607 ParA helix turn helix domain KAF59_13880 PF01709 Transcriptional regulator KAF59_13885 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KAF59_13885 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KAF59_13890 PF00672 HAMP domain KAF59_13890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_13890 PF17200 Single Cache domain 2 KAF59_13895 PF10928 Protein of unknown function (DUF2810) KAF59_13905 PF00343 Carbohydrate phosphorylase KAF59_13910 PF02446 4-alpha-glucanotransferase KAF59_13915 PF00128 Alpha amylase, catalytic domain KAF59_13915 PF02806 Alpha amylase, C-terminal all-beta domain KAF59_13915 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KAF59_13920 PF05638 Type VI secretion system effector, Hcp KAF59_13925 PF04717 Type VI secretion system, phage-baseplate injector KAF59_13930 PF13503 Domain of unknown function (DUF4123) KAF59_13950 PF01757 Acyltransferase family KAF59_13950 PF00842 Alanine racemase, C-terminal domain KAF59_13950 PF01168 Alanine racemase, N-terminal domain KAF59_13960 PF00939 Sodium:sulfate symporter transmembrane region KAF59_13965 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KAF59_13970 PF00704 Glycosyl hydrolases family 18 KAF59_13970 PF08329 Chitinase A, N-terminal domain KAF59_13985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_13985 PF00672 HAMP domain KAF59_13985 PF02743 Cache domain KAF59_14005 PF01569 PAP2 superfamily KAF59_14010 PF00375 Sodium:dicarboxylate symporter family KAF59_14020 PF02630 SCO1/SenC KAF59_14035 PF03616 Sodium/glutamate symporter KAF59_14040 PF12945 Flagellar protein YcgR KAF59_14040 PF07238 PilZ domain KAF59_14055 PF00529 HlyD membrane-fusion protein of T1SS KAF59_14055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KAF59_14060 PF11742 Protein of unknown function (DUF3302) KAF59_14065 PF00990 Diguanylate cyclase, GGDEF domain KAF59_14080 PF01048 Phosphorylase superfamily KAF59_14085 PF08349 Protein of unknown function (DUF1722) KAF59_14090 PF13411 MerR HTH family regulatory protein KAF59_14095 PF03441 FAD binding domain of DNA photolyase KAF59_14095 PF00875 DNA photolyase KAF59_14100 PF03734 L,D-transpeptidase catalytic domain KAF59_14100 PF01476 LysM domain KAF59_14100 PF17969 L,D-transpeptidase C-terminal domain KAF59_14110 PF00271 Helicase conserved C-terminal domain KAF59_14110 PF00270 DEAD/DEAH box helicase KAF59_14115 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain KAF59_14115 PF00326 Prolyl oligopeptidase family KAF59_14120 PF00593 TonB dependent receptor KAF59_14120 PF07715 TonB-dependent Receptor Plug Domain KAF59_14140 PF12729 Four helix bundle sensory module for signal transduction KAF59_14140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_14140 PF00672 HAMP domain KAF59_14145 PF12849 PBP superfamily domain KAF59_14150 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_14155 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_14160 PF00005 ABC transporter KAF59_14165 PF00563 EAL domain KAF59_14165 PF00990 Diguanylate cyclase, GGDEF domain KAF59_14165 PF03707 Bacterial signalling protein N terminal repeat KAF59_14175 PF07670 Nucleoside recognition KAF59_14180 PF01740 STAS domain KAF59_14180 PF00916 Sulfate permease family KAF59_14190 PF08525 Opacity-associated protein A N-terminal motif KAF59_14190 PF01476 LysM domain KAF59_14190 PF01551 Peptidase family M23 KAF59_14195 PF03707 Bacterial signalling protein N terminal repeat KAF59_14195 PF13188 PAS domain KAF59_14195 PF00563 EAL domain KAF59_14195 PF00990 Diguanylate cyclase, GGDEF domain KAF59_14200 PF03466 LysR substrate binding domain KAF59_14200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_14205 PF07690 Major Facilitator Superfamily KAF59_14210 PF00376 MerR family regulatory protein KAF59_14210 PF09278 MerR, DNA binding KAF59_14225 PF00375 Sodium:dicarboxylate symporter family KAF59_14235 PF02001 Protein of unknown function DUF134 KAF59_14255 PF07504 Fungalysin/Thermolysin Propeptide Motif KAF59_14255 PF01483 Proprotein convertase P-domain KAF59_14255 PF01447 Thermolysin metallopeptidase, catalytic domain KAF59_14255 PF02868 Thermolysin metallopeptidase, alpha-helical domain KAF59_14265 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KAF59_14265 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KAF59_14270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KAF59_14270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KAF59_14275 PF00581 Rhodanese-like domain KAF59_14280 PF00196 Bacterial regulatory proteins, luxR family KAF59_14280 PF00563 EAL domain KAF59_14285 PF13419 Haloacid dehalogenase-like hydrolase KAF59_14290 PF01740 STAS domain KAF59_14290 PF00916 Sulfate permease family KAF59_14295 PF00849 RNA pseudouridylate synthase KAF59_14315 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KAF59_14325 PF05947 Type VI secretion system, TssF KAF59_14345 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KAF59_14355 PF00004 ATPase family associated with various cellular activities (AAA) KAF59_14355 PF07724 AAA domain (Cdc48 subfamily) KAF59_14355 PF17871 AAA lid domain KAF59_14355 PF10431 C-terminal, D2-small domain, of ClpB protein KAF59_14360 PF02954 Bacterial regulatory protein, Fis family KAF59_14360 PF00158 Sigma-54 interaction domain KAF59_14375 PF14331 ImcF-related N-terminal domain KAF59_14375 PF06761 Intracellular multiplication and human macrophage-killing KAF59_14375 PF06744 Type VI secretion protein IcmF C-terminal KAF59_14385 PF01471 Putative peptidoglycan binding domain KAF59_14385 PF04717 Type VI secretion system, phage-baseplate injector KAF59_14400 PF05025 RbsD / FucU transport protein family KAF59_14405 PF00005 ABC transporter KAF59_14410 PF02653 Branched-chain amino acid transport system / permease component KAF59_14415 PF13407 Periplasmic binding protein domain KAF59_14420 PF00294 pfkB family carbohydrate kinase KAF59_14425 PF00356 Bacterial regulatory proteins, lacI family KAF59_14430 PF04973 Nicotinamide mononucleotide transporter KAF59_14435 PF04973 Nicotinamide mononucleotide transporter KAF59_14440 PF01048 Phosphorylase superfamily KAF59_14450 PF03009 Glycerophosphoryl diester phosphodiesterase family KAF59_14455 PF07690 Major Facilitator Superfamily KAF59_14470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_14470 PF00512 His Kinase A (phospho-acceptor) domain KAF59_14470 PF02743 Cache domain KAF59_14475 PF02954 Bacterial regulatory protein, Fis family KAF59_14475 PF00072 Response regulator receiver domain KAF59_14475 PF00158 Sigma-54 interaction domain KAF59_14490 PF01266 FAD dependent oxidoreductase KAF59_14495 PF12561 ToxR activated gene A lipoprotein domain KAF59_14495 PF00041 Fibronectin type III domain KAF59_14500 PF01327 Polypeptide deformylase KAF59_14510 PF03334 Na+/H+ antiporter subunit KAF59_14515 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KAF59_14520 PF01899 Na+/H+ ion antiporter subunit KAF59_14525 PF00361 Proton-conducting membrane transporter KAF59_14530 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KAF59_14535 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KAF59_14535 PF00361 Proton-conducting membrane transporter KAF59_14535 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KAF59_14535 PF13244 Domain of unknown function (DUF4040) KAF59_14545 PF00582 Universal stress protein family KAF59_14550 PF03222 Tryptophan/tyrosine permease family KAF59_14555 PF01212 Beta-eliminating lyase KAF59_14565 PF12843 Putative quorum-sensing-regulated virulence factor KAF59_14575 PF08448 PAS fold KAF59_14575 PF00990 Diguanylate cyclase, GGDEF domain KAF59_14575 PF00563 EAL domain KAF59_14580 PF00313 'Cold-shock' DNA-binding domain KAF59_14595 PF07584 Aerotolerance regulator N-terminal KAF59_14595 PF13519 von Willebrand factor type A domain KAF59_14610 PF01882 Protein of unknown function DUF58 KAF59_14615 PF17863 AAA lid domain KAF59_14615 PF07726 ATPase family associated with various cellular activities (AAA) KAF59_14620 PF02743 Cache domain KAF59_14620 PF00672 HAMP domain KAF59_14620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_14635 PF01773 Na+ dependent nucleoside transporter N-terminus KAF59_14635 PF07662 Na+ dependent nucleoside transporter C-terminus KAF59_14635 PF07670 Nucleoside recognition KAF59_14640 PF07687 Peptidase dimerisation domain KAF59_14640 PF01546 Peptidase family M20/M25/M40 KAF59_14650 PF01590 GAF domain KAF59_14650 PF00158 Sigma-54 interaction domain KAF59_14655 PF00042 Globin KAF59_14655 PF00175 Oxidoreductase NAD-binding domain KAF59_14655 PF00970 Oxidoreductase FAD-binding domain KAF59_14660 PF00313 'Cold-shock' DNA-binding domain KAF59_14665 PF03889 Alternative ribosome-rescue factor A KAF59_14680 PF00072 Response regulator receiver domain KAF59_14690 PF01256 Carbohydrate kinase KAF59_14690 PF03853 YjeF-related protein N-terminus KAF59_14695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KAF59_14695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KAF59_14705 PF07885 Ion channel KAF59_14715 PF00478 IMP dehydrogenase / GMP reductase domain KAF59_14720 PF00145 C-5 cytosine-specific DNA methylase KAF59_14740 PF01797 Transposase IS200 like KAF59_14750 PF00271 Helicase conserved C-terminal domain KAF59_14750 PF00270 DEAD/DEAH box helicase KAF59_14755 PF03605 Anaerobic c4-dicarboxylate membrane transporter KAF59_14760 PF02540 NAD synthase KAF59_14765 PF01467 Cytidylyltransferase-like KAF59_14770 PF11849 Domain of unknown function (DUF3369) KAF59_14775 PF00497 Bacterial extracellular solute-binding proteins, family 3 KAF59_14775 PF00512 His Kinase A (phospho-acceptor) domain KAF59_14775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_14785 PF03553 Na+/H+ antiporter family KAF59_14790 PF07690 Major Facilitator Superfamily KAF59_14800 PF00990 Diguanylate cyclase, GGDEF domain KAF59_14800 PF08448 PAS fold KAF59_14805 PF00657 GDSL-like Lipase/Acylhydrolase KAF59_14810 PF12563 Hemolytic toxin N terminal KAF59_14810 PF16458 Beta-prism lectin KAF59_14810 PF07968 Leukocidin/Hemolysin toxin family KAF59_14815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_14815 PF00672 HAMP domain KAF59_14815 PF12729 Four helix bundle sensory module for signal transduction KAF59_14820 PF00561 alpha/beta hydrolase fold KAF59_14825 PF03280 Proteobacterial lipase chaperone protein KAF59_14830 PF00801 PKD domain KAF59_14830 PF05547 Immune inhibitor A peptidase M6 KAF59_14850 PF01032 FecCD transport family KAF59_14855 PF01032 FecCD transport family KAF59_14860 PF00005 ABC transporter KAF59_14865 PF12833 Helix-turn-helix domain KAF59_14870 PF07715 TonB-dependent Receptor Plug Domain KAF59_14870 PF00593 TonB dependent receptor KAF59_14880 PF00871 Acetokinase family KAF59_14895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_14895 PF00512 His Kinase A (phospho-acceptor) domain KAF59_14895 PF00672 HAMP domain KAF59_14900 PF00072 Response regulator receiver domain KAF59_14900 PF00486 Transcriptional regulatory protein, C terminal KAF59_14910 PF01261 Xylose isomerase-like TIM barrel KAF59_14915 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KAF59_14925 PF00596 Class II Aldolase and Adducin N-terminal domain KAF59_14930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KAF59_14935 PF03611 PTS system sugar-specific permease component KAF59_14940 PF00455 DeoR C terminal sensor domain KAF59_14940 PF08220 DeoR-like helix-turn-helix domain KAF59_14950 PF01292 Prokaryotic cytochrome b561 KAF59_14955 PF00128 Alpha amylase, catalytic domain KAF59_14960 PF00132 Bacterial transferase hexapeptide (six repeats) KAF59_14980 PF00072 Response regulator receiver domain KAF59_14980 PF00486 Transcriptional regulatory protein, C terminal KAF59_14985 PF14827 Double sensory domain of two-component sensor kinase KAF59_14985 PF00672 HAMP domain KAF59_14985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_14985 PF00512 His Kinase A (phospho-acceptor) domain KAF59_14985 PF13426 PAS domain KAF59_15025 PF07690 Major Facilitator Superfamily KAF59_15030 PF02743 Cache domain KAF59_15030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_15030 PF00672 HAMP domain KAF59_15035 PF00282 Pyridoxal-dependent decarboxylase conserved domain KAF59_15040 PF00768 D-alanyl-D-alanine carboxypeptidase KAF59_15040 PF07943 Penicillin-binding protein 5, C-terminal domain KAF59_15055 PF00194 Eukaryotic-type carbonic anhydrase KAF59_15060 PF01797 Transposase IS200 like KAF59_15065 PF02347 Glycine cleavage system P-protein KAF59_15070 PF01597 Glycine cleavage H-protein KAF59_15075 PF00464 Serine hydroxymethyltransferase KAF59_15085 PF08669 Glycine cleavage T-protein C-terminal barrel domain KAF59_15085 PF01571 Aminomethyltransferase folate-binding domain KAF59_15095 PF01609 Transposase DDE domain KAF59_15095 PF05598 Transposase domain (DUF772) KAF59_15120 PF03129 Anticodon binding domain KAF59_15120 PF02824 TGS domain KAF59_15120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KAF59_15120 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KAF59_15125 PF00707 Translation initiation factor IF-3, C-terminal domain KAF59_15125 PF05198 Translation initiation factor IF-3, N-terminal domain KAF59_15130 PF01632 Ribosomal protein L35 KAF59_15135 PF00453 Ribosomal protein L20 KAF59_15140 PF13495 Phage integrase, N-terminal SAM-like domain KAF59_15140 PF00589 Phage integrase family KAF59_15180 PF00132 Bacterial transferase hexapeptide (six repeats) KAF59_15220 PF01966 HD domain KAF59_15220 PF13286 Phosphohydrolase-associated domain KAF59_15245 PF00293 NUDIX domain KAF59_15260 PF13302 Acetyltransferase (GNAT) domain KAF59_15265 PF08212 Lipocalin-like domain KAF59_15295 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ KAF59_15320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KAF59_15390 PF04229 GrpB protein KAF59_15400 PF01810 LysE type translocator KAF59_15430 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH KAF59_15585 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB KAF59_15590 PF01381 Helix-turn-helix KAF59_15610 PF17676 LD-carboxypeptidase C-terminal domain KAF59_15610 PF02016 LD-carboxypeptidase N-terminal domain KAF59_15635 PF08212 Lipocalin-like domain KAF59_15640 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KAF59_15650 PF01555 DNA methylase KAF59_15690 PF01965 DJ-1/PfpI family KAF59_15690 PF12833 Helix-turn-helix domain KAF59_15735 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KAF59_15770 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system KAF59_15775 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA KAF59_15790 PF01609 Transposase DDE domain KAF59_15790 PF05598 Transposase domain (DUF772) KAF59_15815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KAF59_15825 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KAF59_15885 PF07859 alpha/beta hydrolase fold KAF59_15900 PF01797 Transposase IS200 like KAF59_15960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KAF59_15975 PF13597 Anaerobic ribonucleoside-triphosphate reductase KAF59_15975 PF03477 ATP cone domain KAF59_15985 PF00155 Aminotransferase class I and II KAF59_15990 PF08443 RimK-like ATP-grasp domain KAF59_15990 PF18030 RimK PreATP-grasp domain KAF59_15995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KAF59_15995 PF02378 Phosphotransferase system, EIIC KAF59_16000 PF00294 pfkB family carbohydrate kinase KAF59_16005 PF00381 PTS HPr component phosphorylation site KAF59_16005 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KAF59_16010 PF00356 Bacterial regulatory proteins, lacI family KAF59_16010 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KAF59_16015 PF00149 Calcineurin-like phosphoesterase KAF59_16015 PF12320 Type 5 capsule protein repressor C-terminal domain KAF59_16020 PF13476 AAA domain KAF59_16025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_16025 PF00072 Response regulator receiver domain KAF59_16030 PF00155 Aminotransferase class I and II KAF59_16040 PF00654 Voltage gated chloride channel KAF59_16045 PF07683 Cobalamin synthesis protein cobW C-terminal domain KAF59_16045 PF02492 CobW/HypB/UreG, nucleotide-binding domain KAF59_16050 PF01926 50S ribosome-binding GTPase KAF59_16055 PF02705 K+ potassium transporter KAF59_16060 PF10371 Domain of unknown function KAF59_16060 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II KAF59_16060 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase KAF59_16060 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg KAF59_16060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KAF59_16065 PF13493 Domain of unknown function (DUF4118) KAF59_16065 PF02702 Osmosensitive K+ channel His kinase sensor domain KAF59_16065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_16065 PF00512 His Kinase A (phospho-acceptor) domain KAF59_16070 PF00486 Transcriptional regulatory protein, C terminal KAF59_16070 PF00072 Response regulator receiver domain KAF59_16075 PF02416 mttA/Hcf106 family KAF59_16080 PF09335 SNARE associated Golgi protein KAF59_16090 PF10388 EAL-domain associated signalling protein domain KAF59_16090 PF00563 EAL domain KAF59_16100 PF01292 Prokaryotic cytochrome b561 KAF59_16105 PF04264 YceI-like domain KAF59_16110 PF01226 Formate/nitrite transporter KAF59_16115 PF03466 LysR substrate binding domain KAF59_16115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_16120 PF06496 Protein of unknown function (DUF1097) KAF59_16125 PF11398 Protein of unknown function (DUF2813) KAF59_16130 PF00149 Calcineurin-like phosphoesterase KAF59_16130 PF02872 5'-nucleotidase, C-terminal domain KAF59_16135 PF03741 Integral membrane protein TerC family KAF59_16145 PF03831 PhnA domain KAF59_16145 PF08274 PhnA Zinc-Ribbon KAF59_16175 PF00990 Diguanylate cyclase, GGDEF domain KAF59_16175 PF08448 PAS fold KAF59_16195 PF17158 Membrane-associated sensor, integral membrane domain KAF59_16195 PF00990 Diguanylate cyclase, GGDEF domain KAF59_16210 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KAF59_16210 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KAF59_16210 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KAF59_16215 PF02233 NAD(P) transhydrogenase beta subunit KAF59_16225 PF00486 Transcriptional regulatory protein, C terminal KAF59_16225 PF00072 Response regulator receiver domain KAF59_16240 PF03701 Uncharacterised protein family (UPF0181) KAF59_16245 PF01253 Translation initiation factor SUI1 KAF59_16255 PF07478 D-ala D-ala ligase C-terminus KAF59_16255 PF01820 D-ala D-ala ligase N-terminus KAF59_16265 PF00583 Acetyltransferase (GNAT) family KAF59_16265 PF13380 CoA binding domain KAF59_16265 PF13607 Succinyl-CoA ligase like flavodoxin domain KAF59_16270 PF03466 LysR substrate binding domain KAF59_16270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_16275 PF00593 TonB dependent receptor KAF59_16275 PF07715 TonB-dependent Receptor Plug Domain KAF59_16280 PF12793 Sugar transport-related sRNA regulator N-term KAF59_16280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KAF59_16290 PF03061 Thioesterase superfamily KAF59_16310 PF02798 Glutathione S-transferase, N-terminal domain KAF59_16310 PF00043 Glutathione S-transferase, C-terminal domain KAF59_16325 PF00132 Bacterial transferase hexapeptide (six repeats) KAF59_16325 PF12804 MobA-like NTP transferase domain KAF59_16325 PF03479 Plants and Prokaryotes Conserved (PCC) domain KAF59_16330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KAF59_16330 PF00005 ABC transporter KAF59_16335 PF12911 N-terminal TM domain of oligopeptide transport permease C KAF59_16335 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_16340 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_16345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KAF59_16370 PF00854 POT family KAF59_16380 PF00392 Bacterial regulatory proteins, gntR family KAF59_16380 PF07702 UTRA domain KAF59_16385 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_16390 PF00005 ABC transporter KAF59_16400 PF00266 Aminotransferase class-V KAF59_16405 PF00202 Aminotransferase class-III KAF59_16410 PF13419 Haloacid dehalogenase-like hydrolase KAF59_16415 PF14760 Rnk N-terminus KAF59_16415 PF01272 Transcription elongation factor, GreA/GreB, C-term KAF59_16420 PF13419 Haloacid dehalogenase-like hydrolase KAF59_16435 PF01741 Large-conductance mechanosensitive channel, MscL KAF59_16440 PF01268 Formate--tetrahydrofolate ligase KAF59_16445 PF01641 SelR domain KAF59_16445 PF01625 Peptide methionine sulfoxide reductase KAF59_16450 PF01227 GTP cyclohydrolase I KAF59_16455 PF03454 MoeA C-terminal region (domain IV) KAF59_16455 PF00994 Probable molybdopterin binding domain KAF59_16455 PF03453 MoeA N-terminal region (domain I and II) KAF59_16460 PF00899 ThiF family KAF59_16470 PF00581 Rhodanese-like domain KAF59_16475 PF04198 Putative sugar-binding domain KAF59_16480 PF00923 Transaldolase/Fructose-6-phosphate aldolase KAF59_16485 PF02779 Transketolase, pyrimidine binding domain KAF59_16485 PF02780 Transketolase, C-terminal domain KAF59_16485 PF00456 Transketolase, thiamine diphosphate binding domain KAF59_16500 PF02810 SEC-C motif KAF59_16500 PF07517 SecA DEAD-like domain KAF59_16500 PF01043 SecA preprotein cross-linking domain KAF59_16500 PF07516 SecA Wing and Scaffold domain KAF59_16510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KAF59_16510 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KAF59_16525 PF06942 GlpM protein KAF59_16535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_16535 PF03466 LysR substrate binding domain KAF59_16540 PF03992 Antibiotic biosynthesis monooxygenase KAF59_16550 PF00873 AcrB/AcrD/AcrF family KAF59_16565 PF04143 Sulphur transport KAF59_16580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KAF59_16580 PF07992 Pyridine nucleotide-disulphide oxidoreductase KAF59_16625 PF02378 Phosphotransferase system, EIIC KAF59_16625 PF00367 phosphotransferase system, EIIB KAF59_16630 PF00356 Bacterial regulatory proteins, lacI family KAF59_16635 PF00251 Glycosyl hydrolases family 32 N-terminal domain KAF59_16635 PF08244 Glycosyl hydrolases family 32 C terminal KAF59_16640 PF00294 pfkB family carbohydrate kinase KAF59_16645 PF01266 FAD dependent oxidoreductase KAF59_16645 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KAF59_16650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_16650 PF00672 HAMP domain KAF59_16655 PF00691 OmpA family KAF59_16655 PF13488 Glycine zipper KAF59_16660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KAF59_16660 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KAF59_16665 PF13419 Haloacid dehalogenase-like hydrolase KAF59_16670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_16670 PF00672 HAMP domain KAF59_16670 PF12729 Four helix bundle sensory module for signal transduction KAF59_16675 PF03606 C4-dicarboxylate anaerobic carrier KAF59_16680 PF03313 Serine dehydratase alpha chain KAF59_16680 PF03315 Serine dehydratase beta chain KAF59_16685 PF00474 Sodium:solute symporter family KAF59_16700 PF00356 Bacterial regulatory proteins, lacI family KAF59_16705 PF00196 Bacterial regulatory proteins, luxR family KAF59_16705 PF00072 Response regulator receiver domain KAF59_16710 PF00672 HAMP domain KAF59_16710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_16710 PF07730 Histidine kinase KAF59_16710 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KAF59_16715 PF12838 4Fe-4S dicluster domain KAF59_16715 PF13187 4Fe-4S dicluster domain KAF59_16725 PF01568 Molydopterin dinucleotide binding domain KAF59_16725 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KAF59_16725 PF00384 Molybdopterin oxidoreductase KAF59_16730 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) KAF59_16735 PF03264 NapC/NirT cytochrome c family, N-terminal region KAF59_16745 PF01966 HD domain KAF59_16750 PF00196 Bacterial regulatory proteins, luxR family KAF59_16750 PF00072 Response regulator receiver domain KAF59_16755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_16755 PF05231 MASE1 KAF59_16755 PF07730 Histidine kinase KAF59_16760 PF07690 Major Facilitator Superfamily KAF59_16770 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_16775 PF08402 TOBE domain KAF59_16775 PF00005 ABC transporter KAF59_16780 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus KAF59_16790 PF00108 Thiolase, N-terminal domain KAF59_16790 PF02803 Thiolase, C-terminal domain KAF59_16795 PF00106 short chain dehydrogenase KAF59_16800 PF07549 SecD/SecF GG Motif KAF59_16800 PF02355 Protein export membrane protein KAF59_16805 PF13721 SecD export protein N-terminal TM region KAF59_16805 PF02355 Protein export membrane protein KAF59_16805 PF07549 SecD/SecF GG Motif KAF59_16820 PF00990 Diguanylate cyclase, GGDEF domain KAF59_16825 PF00483 Nucleotidyl transferase KAF59_16830 PF06483 Chitinase C KAF59_16830 PF00704 Glycosyl hydrolases family 18 KAF59_16835 PF00465 Iron-containing alcohol dehydrogenase KAF59_16845 PF14532 Sigma-54 interaction domain KAF59_16845 PF00072 Response regulator receiver domain KAF59_16845 PF02954 Bacterial regulatory protein, Fis family KAF59_16850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_16850 PF02743 Cache domain KAF59_16850 PF00512 His Kinase A (phospho-acceptor) domain KAF59_16860 PF07690 Major Facilitator Superfamily KAF59_16865 PF02887 Pyruvate kinase, alpha/beta domain KAF59_16865 PF00224 Pyruvate kinase, barrel domain KAF59_16870 PF00672 HAMP domain KAF59_16870 PF01627 Hpt domain KAF59_16870 PF00512 His Kinase A (phospho-acceptor) domain KAF59_16870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_16870 PF00072 Response regulator receiver domain KAF59_16875 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KAF59_16880 PF02142 MGS-like domain KAF59_16885 PF00857 Isochorismatase family KAF59_16890 PF01219 Prokaryotic diacylglycerol kinase KAF59_16905 PF00580 UvrD/REP helicase N-terminal domain KAF59_16905 PF13361 UvrD-like helicase C-terminal domain KAF59_16905 PF12462 DNA helicase IV / RNA helicase N terminal KAF59_16910 PF12805 FUSC-like inner membrane protein yccS KAF59_16915 PF00072 Response regulator receiver domain KAF59_16915 PF13188 PAS domain KAF59_16915 PF08448 PAS fold KAF59_16915 PF00512 His Kinase A (phospho-acceptor) domain KAF59_16915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_16940 PF03459 TOBE domain KAF59_16940 PF00005 ABC transporter KAF59_16945 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_16955 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KAF59_16955 PF07685 CobB/CobQ-like glutamine amidotransferase domain KAF59_16995 PF00512 His Kinase A (phospho-acceptor) domain KAF59_16995 PF09308 LuxQ, periplasmic KAF59_16995 PF00072 Response regulator receiver domain KAF59_16995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_17000 PF13407 Periplasmic binding protein domain KAF59_17010 PF01541 GIY-YIG catalytic domain KAF59_17015 PF04337 Protein of unknown function, DUF480 KAF59_17025 PF04363 Protein of unknown function (DUF496) KAF59_17035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KAF59_17035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KAF59_17040 PF00230 Major intrinsic protein KAF59_17045 PF04324 BFD-like [2Fe-2S] binding domain KAF59_17045 PF01266 FAD dependent oxidoreductase KAF59_17050 PF00890 FAD binding domain KAF59_17055 PF02754 Cysteine-rich domain KAF59_17055 PF13183 4Fe-4S dicluster domain KAF59_17060 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KAF59_17060 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KAF59_17065 PF00085 Thioredoxin KAF59_17070 PF07690 Major Facilitator Superfamily KAF59_17095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_17095 PF03466 LysR substrate binding domain KAF59_17100 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_17105 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_17110 PF00497 Bacterial extracellular solute-binding proteins, family 3 KAF59_17115 PF00005 ABC transporter KAF59_17125 PF05762 VWA domain containing CoxE-like protein KAF59_17130 PF07728 AAA domain (dynein-related subfamily) KAF59_17130 PF12592 Protein of unknown function (DUF3763) KAF59_17130 PF17868 AAA lid domain KAF59_17135 PF00293 NUDIX domain KAF59_17140 PF01212 Beta-eliminating lyase KAF59_17145 PF00034 Cytochrome c KAF59_17150 PF08361 MAATS-type transcriptional repressor, C-terminal region KAF59_17150 PF00440 Bacterial regulatory proteins, tetR family KAF59_17155 PF00271 Helicase conserved C-terminal domain KAF59_17155 PF00270 DEAD/DEAH box helicase KAF59_17160 PF04336 Acyl carrier protein phosphodiesterase KAF59_17165 PF03222 Tryptophan/tyrosine permease family KAF59_17170 PF12729 Four helix bundle sensory module for signal transduction KAF59_17170 PF00672 HAMP domain KAF59_17170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_17175 PF16363 GDP-mannose 4,6 dehydratase KAF59_17180 PF03746 LamB/YcsF family KAF59_17190 PF02626 Carboxyltransferase domain, subdomain A and B KAF59_17200 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KAF59_17200 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KAF59_17210 PF00005 ABC transporter KAF59_17215 PF13472 GDSL-like Lipase/Acylhydrolase family KAF59_17220 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase KAF59_17220 PF12241 Trans-2-enoyl-CoA reductase catalytic region KAF59_17220 PF07055 Enoyl reductase FAD binding domain KAF59_17225 PF00498 FHA domain KAF59_17225 PF00990 Diguanylate cyclase, GGDEF domain KAF59_17225 PF00563 EAL domain KAF59_17235 PF00226 DnaJ domain KAF59_17235 PF01556 DnaJ C terminal domain KAF59_17235 PF00684 DnaJ central domain KAF59_17265 PF02796 Helix-turn-helix domain of resolvase KAF59_17265 PF00239 Resolvase, N terminal domain KAF59_17275 PF13419 Haloacid dehalogenase-like hydrolase KAF59_17290 PF00294 pfkB family carbohydrate kinase KAF59_17295 PF00884 Sulfatase KAF59_17305 PF03880 DbpA RNA binding domain KAF59_17305 PF00271 Helicase conserved C-terminal domain KAF59_17305 PF00270 DEAD/DEAH box helicase KAF59_17310 PF00575 S1 RNA binding domain KAF59_17310 PF00773 RNB domain KAF59_17310 PF08206 Ribonuclease B OB domain KAF59_17320 PF12849 PBP superfamily domain KAF59_17325 PF01575 MaoC like domain KAF59_17330 PF04244 Deoxyribodipyrimidine photo-lyase-related protein KAF59_17335 PF18416 N-acetylglucosamine binding protein domain 2 KAF59_17335 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading KAF59_17340 PF02868 Thermolysin metallopeptidase, alpha-helical domain KAF59_17340 PF04151 Bacterial pre-peptidase C-terminal domain KAF59_17340 PF07504 Fungalysin/Thermolysin Propeptide Motif KAF59_17340 PF01447 Thermolysin metallopeptidase, catalytic domain KAF59_17340 PF03413 Peptidase propeptide and YPEB domain KAF59_17345 PF04389 Peptidase family M28 KAF59_17345 PF04151 Bacterial pre-peptidase C-terminal domain KAF59_17350 PF00491 Arginase family KAF59_17355 PF17944 Arginine decarboxylase C-terminal helical extension KAF59_17355 PF17810 Arginine decarboxylase helical bundle domain KAF59_17355 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KAF59_17365 PF01769 Divalent cation transporter KAF59_17365 PF03448 MgtE intracellular N domain KAF59_17365 PF00571 CBS domain KAF59_17370 PF00166 Chaperonin 10 Kd subunit KAF59_17375 PF00118 TCP-1/cpn60 chaperonin family KAF59_17385 PF00696 Amino acid kinase family KAF59_17385 PF13840 ACT domain KAF59_17390 PF06339 Ectoine synthase KAF59_17395 PF00202 Aminotransferase class-III KAF59_17400 PF00583 Acetyltransferase (GNAT) family KAF59_17405 PF01329 Pterin 4 alpha carbinolamine dehydratase KAF59_17410 PF00351 Biopterin-dependent aromatic amino acid hydroxylase KAF59_17415 PF00501 AMP-binding enzyme KAF59_17415 PF13193 AMP-binding enzyme C-terminal domain KAF59_17435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_17435 PF03466 LysR substrate binding domain KAF59_17445 PF00892 EamA-like transporter family KAF59_17450 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal KAF59_17450 PF00132 Bacterial transferase hexapeptide (six repeats) KAF59_17450 PF14602 Hexapeptide repeat of succinyl-transferase KAF59_17455 PF01595 Cyclin M transmembrane N-terminal domain KAF59_17455 PF03471 Transporter associated domain KAF59_17455 PF00571 CBS domain KAF59_17460 PF02566 OsmC-like protein KAF59_17465 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KAF59_17470 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KAF59_17470 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KAF59_17485 PF13520 Amino acid permease KAF59_17490 PF00990 Diguanylate cyclase, GGDEF domain KAF59_17500 PF00072 Response regulator receiver domain KAF59_17500 PF04397 LytTr DNA-binding domain KAF59_17505 PF07694 5TMR of 5TMR-LYT KAF59_17505 PF13492 GAF domain KAF59_17505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_17505 PF06580 Histidine kinase KAF59_17520 PF00005 ABC transporter KAF59_17520 PF02687 FtsX-like permease family KAF59_17520 PF12704 MacB-like periplasmic core domain KAF59_17525 PF00005 ABC transporter KAF59_17535 PF00248 Aldo/keto reductase family KAF59_17540 PF00128 Alpha amylase, catalytic domain KAF59_17550 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KAF59_17555 PF12262 Bacterial virulence factor lipase N-terminal KAF59_17560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_17560 PF13426 PAS domain KAF59_17560 PF08447 PAS fold KAF59_17565 PF01447 Thermolysin metallopeptidase, catalytic domain KAF59_17565 PF04151 Bacterial pre-peptidase C-terminal domain KAF59_17565 PF02868 Thermolysin metallopeptidase, alpha-helical domain KAF59_17565 PF03413 Peptidase propeptide and YPEB domain KAF59_17565 PF07504 Fungalysin/Thermolysin Propeptide Motif KAF59_17575 PF03922 OmpW family KAF59_17585 PF00768 D-alanyl-D-alanine carboxypeptidase KAF59_17590 PF00392 Bacterial regulatory proteins, gntR family KAF59_17590 PF00155 Aminotransferase class I and II KAF59_17595 PF01654 Cytochrome bd terminal oxidase subunit I KAF59_17600 PF02322 Cytochrome bd terminal oxidase subunit II KAF59_17615 PF00291 Pyridoxal-phosphate dependent enzyme KAF59_17620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_17620 PF03466 LysR substrate binding domain KAF59_17665 PF08240 Alcohol dehydrogenase GroES-like domain KAF59_17665 PF00107 Zinc-binding dehydrogenase KAF59_17670 PF00155 Aminotransferase class I and II KAF59_17685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_17685 PF03466 LysR substrate binding domain KAF59_17690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KAF59_17715 PF01966 HD domain KAF59_17720 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KAF59_17720 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KAF59_17725 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KAF59_17730 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KAF59_17730 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KAF59_17755 PF02595 Glycerate kinase family KAF59_17760 PF02447 GntP family permease KAF59_17765 PF13556 PucR C-terminal helix-turn-helix domain KAF59_17765 PF05651 Putative sugar diacid recognition KAF59_17765 PF17853 GGDEF-like domain KAF59_17770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_17770 PF00672 HAMP domain KAF59_17775 PF01243 Pyridoxamine 5'-phosphate oxidase KAF59_17780 PF06228 Haem utilisation ChuX/HutX KAF59_17785 PF04055 Radical SAM superfamily KAF59_17790 PF03544 Gram-negative bacterial TonB protein C-terminal KAF59_17795 PF01618 MotA/TolQ/ExbB proton channel family KAF59_17800 PF02472 Biopolymer transport protein ExbD/TolR KAF59_17805 PF01497 Periplasmic binding protein KAF59_17810 PF01032 FecCD transport family KAF59_17815 PF00005 ABC transporter KAF59_17845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_17845 PF00672 HAMP domain KAF59_17845 PF02743 Cache domain KAF59_17850 PF03476 MOSC N-terminal beta barrel domain KAF59_17850 PF03473 MOSC domain KAF59_17850 PF00111 2Fe-2S iron-sulfur cluster binding domain KAF59_17850 PF03473 MOSC domain KAF59_17850 PF00111 2Fe-2S iron-sulfur cluster binding domain KAF59_17850 PF03476 MOSC N-terminal beta barrel domain KAF59_17855 PF01979 Amidohydrolase family KAF59_17865 PF05656 Protein of unknown function (DUF805) KAF59_17875 PF05958 tRNA (Uracil-5-)-methyltransferase KAF59_17880 PF05661 Protein of unknown function (DUF808) KAF59_17890 PF00313 'Cold-shock' DNA-binding domain KAF59_17915 PF00990 Diguanylate cyclase, GGDEF domain KAF59_17915 PF08448 PAS fold KAF59_17920 PF08220 DeoR-like helix-turn-helix domain KAF59_17920 PF00455 DeoR C terminal sensor domain KAF59_17935 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_17940 PF14785 Maltose transport system permease protein MalF P2 domain KAF59_17940 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_17945 PF01547 Bacterial extracellular solute-binding protein KAF59_17950 PF00005 ABC transporter KAF59_17950 PF08402 TOBE domain KAF59_17955 PF13302 Acetyltransferase (GNAT) domain KAF59_17970 PF01906 Putative heavy-metal-binding KAF59_17975 PF00196 Bacterial regulatory proteins, luxR family KAF59_17985 PF01584 CheW-like domain KAF59_17985 PF00072 Response regulator receiver domain KAF59_17990 PF01047 MarR family KAF59_17995 PF00990 Diguanylate cyclase, GGDEF domain KAF59_18010 PF03707 Bacterial signalling protein N terminal repeat KAF59_18010 PF00990 Diguanylate cyclase, GGDEF domain KAF59_18010 PF00563 EAL domain KAF59_18030 PF03466 LysR substrate binding domain KAF59_18030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_18035 PF00563 EAL domain KAF59_18035 PF00990 Diguanylate cyclase, GGDEF domain KAF59_18045 PF02678 Pirin KAF59_18045 PF05726 Pirin C-terminal cupin domain KAF59_18050 PF06865 Pyrimidine/purine nucleoside phosphorylase KAF59_18060 PF07690 Major Facilitator Superfamily KAF59_18065 PF00672 HAMP domain KAF59_18065 PF17200 Single Cache domain 2 KAF59_18065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_18070 PF05362 Lon protease (S16) C-terminal proteolytic domain KAF59_18070 PF13654 AAA domain KAF59_18080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KAF59_18080 PF00005 ABC transporter KAF59_18085 PF00497 Bacterial extracellular solute-binding proteins, family 3 KAF59_18090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_18090 PF08447 PAS fold KAF59_18090 PF13426 PAS domain KAF59_18105 PF03466 LysR substrate binding domain KAF59_18105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_18115 PF02652 L-lactate permease KAF59_18120 PF01070 FMN-dependent dehydrogenase KAF59_18130 PF03618 Kinase/pyrophosphorylase KAF59_18135 PF00391 PEP-utilising enzyme, mobile domain KAF59_18135 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KAF59_18135 PF02896 PEP-utilising enzyme, TIM barrel domain KAF59_18140 PF08447 PAS fold KAF59_18140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_18145 PF01554 MatE KAF59_18150 PF00271 Helicase conserved C-terminal domain KAF59_18150 PF00270 DEAD/DEAH box helicase KAF59_18155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_18155 PF03466 LysR substrate binding domain KAF59_18165 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KAF59_18175 PF00005 ABC transporter KAF59_18175 PF00664 ABC transporter transmembrane region KAF59_18185 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KAF59_18195 PF01810 LysE type translocator KAF59_18200 PF12833 Helix-turn-helix domain KAF59_18215 PF01557 Fumarylacetoacetate (FAA) hydrolase family KAF59_18220 PF01047 MarR family KAF59_18225 PF02566 OsmC-like protein KAF59_18230 PF13609 Gram-negative porin KAF59_18235 PF00892 EamA-like transporter family KAF59_18240 PF00462 Glutaredoxin KAF59_18245 PF07670 Nucleoside recognition KAF59_18250 PF07670 Nucleoside recognition KAF59_18255 PF03600 Citrate transporter KAF59_18265 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KAF59_18265 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KAF59_18270 PF06029 AlkA N-terminal domain KAF59_18270 PF00730 HhH-GPD superfamily base excision DNA repair protein KAF59_18275 PF07681 DoxX KAF59_18280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_18280 PF03466 LysR substrate binding domain KAF59_18300 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KAF59_18310 PF07148 Maltose operon periplasmic protein precursor (MalM) KAF59_18315 PF02264 LamB porin KAF59_18320 PF00128 Alpha amylase, catalytic domain KAF59_18320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KAF59_18330 PF16591 Helical bimodular sensor domain KAF59_18330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_18330 PF00672 HAMP domain KAF59_18345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_18345 PF00672 HAMP domain KAF59_18355 PF00793 DAHP synthetase I family KAF59_18360 PF00005 ABC transporter KAF59_18365 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_18370 PF00497 Bacterial extracellular solute-binding proteins, family 3 KAF59_18375 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_18380 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KAF59_18380 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KAF59_18380 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KAF59_18380 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KAF59_18390 PF01551 Peptidase family M23 KAF59_18390 PF04225 Opacity-associated protein A LysM-like domain KAF59_18395 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KAF59_18395 PF02378 Phosphotransferase system, EIIC KAF59_18395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KAF59_18400 PF08125 Mannitol dehydrogenase C-terminal domain KAF59_18400 PF01232 Mannitol dehydrogenase Rossmann domain KAF59_18405 PF05068 Mannitol repressor KAF59_18410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KAF59_18440 PF13460 NAD(P)H-binding KAF59_18445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_18445 PF03466 LysR substrate binding domain KAF59_18450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_18450 PF00672 HAMP domain KAF59_18450 PF02743 Cache domain KAF59_18455 PF00106 short chain dehydrogenase KAF59_18460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KAF59_18460 PF03466 LysR substrate binding domain KAF59_18465 PF04013 Putative SAM-dependent RNA methyltransferase KAF59_18470 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KAF59_18480 PF13520 Amino acid permease KAF59_18485 PF01276 Orn/Lys/Arg decarboxylase, major domain KAF59_18485 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KAF59_18485 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain KAF59_18490 PF10940 Protein of unknown function (DUF2618) KAF59_18495 PF00171 Aldehyde dehydrogenase family KAF59_18500 PF01037 Lrp/AsnC ligand binding domain KAF59_18505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_18505 PF00672 HAMP domain KAF59_18505 PF02743 Cache domain KAF59_18515 PF00474 Sodium:solute symporter family KAF59_18525 PF00171 Aldehyde dehydrogenase family KAF59_18525 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KAF59_18525 PF14850 DNA-binding domain of Proline dehydrogenase KAF59_18525 PF01619 Proline dehydrogenase KAF59_18530 PF12833 Helix-turn-helix domain KAF59_18540 PF03781 Sulfatase-modifying factor enzyme 1 KAF59_18545 PF00072 Response regulator receiver domain KAF59_18545 PF00196 Bacterial regulatory proteins, luxR family KAF59_18550 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KAF59_18550 PF01243 Pyridoxamine 5'-phosphate oxidase KAF59_18555 PF00529 HlyD membrane-fusion protein of T1SS KAF59_18570 PF03412 Peptidase C39 family KAF59_18570 PF00005 ABC transporter KAF59_18570 PF00664 ABC transporter transmembrane region KAF59_18580 PF00072 Response regulator receiver domain KAF59_18580 PF00486 Transcriptional regulatory protein, C terminal KAF59_18590 PF02743 Cache domain KAF59_18590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_18590 PF00672 HAMP domain KAF59_18595 PF01339 CheB methylesterase KAF59_18595 PF00072 Response regulator receiver domain KAF59_18600 PF03975 CheD chemotactic sensory transduction KAF59_18605 PF03705 CheR methyltransferase, all-alpha domain KAF59_18605 PF01739 CheR methyltransferase, SAM binding domain KAF59_18610 PF02203 Tar ligand binding domain homologue KAF59_18610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KAF59_18610 PF00672 HAMP domain KAF59_18615 PF01584 CheW-like domain KAF59_18620 PF01584 CheW-like domain KAF59_18625 PF02895 Signal transducing histidine kinase, homodimeric domain KAF59_18625 PF01627 Hpt domain KAF59_18625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_18625 PF01584 CheW-like domain KAF59_18625 PF09078 CheY binding KAF59_18630 PF00072 Response regulator receiver domain KAF59_18645 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_18650 PF00528 Binding-protein-dependent transport system inner membrane component KAF59_18650 PF12911 N-terminal TM domain of oligopeptide transport permease C KAF59_18655 PF00005 ABC transporter KAF59_18655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KAF59_18660 PF08019 Phosphoethanolamine transferase EptA/EptB KAF59_18660 PF00884 Sulfatase KAF59_18665 PF08521 Two-component sensor kinase N-terminal KAF59_18665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KAF59_18665 PF00512 His Kinase A (phospho-acceptor) domain KAF59_18670 PF00486 Transcriptional regulatory protein, C terminal KAF59_18670 PF00072 Response regulator receiver domain KAF59_18690 PF00501 AMP-binding enzyme KAF59_18700 PF05127 Helicase KAF59_18700 PF13718 GNAT acetyltransferase 2 KAF59_18705 PF13416 Bacterial extracellular solute-binding protein