locus-tag class description MS6_0002 PF00497 Bacterial extracellular solute-binding proteins, family 3 MS6_0003 PF00528 Binding-protein-dependent transport system inner membrane component MS6_0004 PF00005 ABC transporter MS6_0005 PF00468 Ribosomal protein L34 MS6_0006 PF00825 Ribonuclease P MS6_0007 PF02096 60Kd inner membrane protein MS6_0007 PF14849 YidC periplasmic domain MS6_0008 PF10396 GTP-binding protein TrmE N-terminus MS6_0008 PF12631 MnmE helical domain MS6_0008 PF01926 50S ribosome-binding GTPase MS6_0009 PF00258 Flavodoxin MS6_0010 PF01134 Glucose inhibited division protein A MS6_0010 PF13932 GidA associated domain MS6_0011 PF02527 rRNA small subunit methyltransferase G MS6_0012 PF13614 AAA domain MS6_0013 PF02195 ParB-like nuclease domain MS6_0013 PF17762 HTH domain found in ParB protein MS6_0014 PF03899 ATP synthase I chain MS6_0015 PF00119 ATP synthase A chain MS6_0016 PF00137 ATP synthase subunit C MS6_0017 PF00430 ATP synthase B/B' CF(0) MS6_0018 PF00213 ATP synthase delta (OSCP) subunit MS6_0019 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MS6_0019 PF00306 ATP synthase alpha/beta chain, C terminal domain MS6_0019 PF02874 ATP synthase alpha/beta family, beta-barrel domain MS6_0020 PF00231 ATP synthase MS6_0021 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MS6_0021 PF02874 ATP synthase alpha/beta family, beta-barrel domain MS6_0022 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MS6_0022 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain MS6_0023 PF00132 Bacterial transferase hexapeptide (six repeats) MS6_0023 PF12804 MobA-like NTP transferase domain MS6_0024 PF07690 Major Facilitator Superfamily MS6_0025 PF03466 LysR substrate binding domain MS6_0025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_0026 PF02803 Thiolase, C-terminal domain MS6_0026 PF00108 Thiolase, N-terminal domain MS6_0027 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MS6_0027 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MS6_0027 PF00378 Enoyl-CoA hydratase/isomerase MS6_0028 PF09186 Domain of unknown function (DUF1949) MS6_0028 PF01205 Uncharacterized protein family UPF0029 MS6_0029 PF02386 Cation transport protein MS6_0030 PF12724 Flavodoxin domain MS6_0032 PF03466 LysR substrate binding domain MS6_0032 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_0033 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MS6_0033 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MS6_0034 PF04380 Membrane fusogenic activity MS6_0035 PF00873 AcrB/AcrD/AcrF family MS6_0036 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MS6_0037 PF00440 Bacterial regulatory proteins, tetR family MS6_0038 PF00580 UvrD/REP helicase N-terminal domain MS6_0038 PF13361 UvrD-like helicase C-terminal domain MS6_0039 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MS6_0041 PF00005 ABC transporter MS6_0041 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MS6_0042 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MS6_0044 PF12911 N-terminal TM domain of oligopeptide transport permease C MS6_0044 PF00528 Binding-protein-dependent transport system inner membrane component MS6_0046 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MS6_0055 PF07992 Pyridine nucleotide-disulphide oxidoreductase MS6_0055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MS6_0056 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ MS6_0057 PF01432 Peptidase family M3 MS6_0058 PF00580 UvrD/REP helicase N-terminal domain MS6_0058 PF13361 UvrD-like helicase C-terminal domain MS6_0059 PF01810 LysE type translocator MS6_0060 PF12833 Helix-turn-helix domain MS6_0062 PF00892 EamA-like transporter family MS6_0064 PF16124 RecQ zinc-binding MS6_0064 PF09382 RQC domain MS6_0064 PF00270 DEAD/DEAH box helicase MS6_0064 PF00271 Helicase conserved C-terminal domain MS6_0064 PF00570 HRDC domain MS6_0067 PF00005 ABC transporter MS6_0067 PF00664 ABC transporter transmembrane region MS6_0068 PF00593 TonB dependent receptor MS6_0068 PF07715 TonB-dependent Receptor Plug Domain MS6_0069 PF00005 ABC transporter MS6_0070 PF01497 Periplasmic binding protein MS6_0071 PF01032 FecCD transport family MS6_0072 PF01418 Helix-turn-helix domain, rpiR family MS6_0072 PF01380 SIS domain MS6_0073 PF13580 SIS domain MS6_0074 PF00367 phosphotransferase system, EIIB MS6_0074 PF02378 Phosphotransferase system, EIIC MS6_0075 PF03350 Uncharacterized protein family, UPF0114 MS6_0076 PF03755 YicC-like family, N-terminal region MS6_0076 PF08340 Domain of unknown function (DUF1732) MS6_0077 PF01138 3' exoribonuclease family, domain 1 MS6_0077 PF03725 3' exoribonuclease family, domain 2 MS6_0078 PF00156 Phosphoribosyl transferase domain MS6_0079 PF03279 Bacterial lipid A biosynthesis acyltransferase MS6_0080 PF03279 Bacterial lipid A biosynthesis acyltransferase MS6_0081 PF00440 Bacterial regulatory proteins, tetR family MS6_0083 PF02441 Flavoprotein MS6_0083 PF04127 DNA / pantothenate metabolism flavoprotein MS6_0084 PF02743 Cache domain MS6_0084 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_0084 PF00672 HAMP domain MS6_0085 PF04002 RadC-like JAB domain MS6_0087 PF00830 Ribosomal L28 family MS6_0088 PF00471 Ribosomal protein L33 MS6_0090 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MS6_0090 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MS6_0090 PF06827 Zinc finger found in FPG and IleRS MS6_0091 PF01467 Cytidylyltransferase-like MS6_0092 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MS6_0093 PF00535 Glycosyl transferase family 2 MS6_0094 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MS6_0101 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) MS6_0102 PF04488 Glycosyltransferase sugar-binding region containing DXD motif MS6_0104 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MS6_0107 PF00457 Glycosyl hydrolases family 11 MS6_0107 PF01522 Polysaccharide deacetylase MS6_0108 PF01370 NAD dependent epimerase/dehydratase family MS6_0109 PF00483 Nucleotidyl transferase MS6_0109 PF01050 Mannose-6-phosphate isomerase MS6_0110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MS6_0110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MS6_0110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MS6_0110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MS6_0111 PF16363 GDP-mannose 4,6 dehydratase MS6_0112 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MS6_0115 PF00005 ABC transporter MS6_0115 PF14524 Wzt C-terminal domain MS6_0117 PF00501 AMP-binding enzyme MS6_0117 PF13193 AMP-binding enzyme C-terminal domain MS6_0118 PF00171 Aldehyde dehydrogenase family MS6_0118 PF00465 Iron-containing alcohol dehydrogenase MS6_0120 PF13808 DDE_Tnp_1-associated MS6_0120 PF01609 Transposase DDE domain MS6_0121 PF01609 Transposase DDE domain MS6_0121 PF13808 DDE_Tnp_1-associated MS6_0124 PF02719 Polysaccharide biosynthesis protein MS6_0125 PF01370 NAD dependent epimerase/dehydratase family MS6_0126 PF02397 Bacterial sugar transferase MS6_0128 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MS6_0128 PF00753 Metallo-beta-lactamase superfamily MS6_0128 PF10996 Beta-Casp domain MS6_0129 PF00924 Mechanosensitive ion channel MS6_0130 PF03167 Uracil DNA glycosylase superfamily MS6_0131 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MS6_0132 PF04222 Protein of unknown function (DUF416) MS6_0133 PF01238 Phosphomannose isomerase type I MS6_0134 PF00480 ROK family MS6_0135 PF01595 Cyclin M transmembrane N-terminal domain MS6_0135 PF00571 CBS domain MS6_0136 PF00216 Bacterial DNA-binding protein MS6_0138 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MS6_0138 PF02843 Phosphoribosylglycinamide synthetase, C domain MS6_0138 PF02844 Phosphoribosylglycinamide synthetase, N domain MS6_0139 PF02142 MGS-like domain MS6_0139 PF01808 AICARFT/IMPCHase bienzyme MS6_0141 PF13411 MerR HTH family regulatory protein MS6_0142 PF00486 Transcriptional regulatory protein, C terminal MS6_0142 PF18500 CadC C-terminal domain 1 MS6_0144 PF13520 Amino acid permease MS6_0145 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain MS6_0145 PF01276 Orn/Lys/Arg decarboxylase, major domain MS6_0145 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain MS6_0146 PF00672 HAMP domain MS6_0146 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_0146 PF17200 Single Cache domain 2 MS6_0148 PF07715 TonB-dependent Receptor Plug Domain MS6_0148 PF00593 TonB dependent receptor MS6_0149 PF01081 KDPG and KHG aldolase MS6_0150 PF02447 GntP family permease MS6_0151 PF01202 Shikimate kinase MS6_0152 PF00920 Dehydratase family MS6_0153 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family MS6_0153 PF00356 Bacterial regulatory proteins, lacI family MS6_0154 PF02954 Bacterial regulatory protein, Fis family MS6_0155 PF01207 Dihydrouridine synthase (Dus) MS6_0157 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MS6_0157 PF00289 Biotin carboxylase, N-terminal domain MS6_0157 PF02785 Biotin carboxylase C-terminal domain MS6_0158 PF00364 Biotin-requiring enzyme MS6_0159 PF01220 Dehydroquinase class II MS6_0160 PF16177 Acetyl-coenzyme A synthetase N-terminus MS6_0160 PF00501 AMP-binding enzyme MS6_0160 PF13193 AMP-binding enzyme C-terminal domain MS6_0163 PF12832 MFS_1 like family MS6_0164 PF09456 RcsC Alpha-Beta-Loop (ABL) MS6_0164 PF00512 His Kinase A (phospho-acceptor) domain MS6_0164 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_0164 PF00072 Response regulator receiver domain MS6_0165 PF02541 Ppx/GppA phosphatase family MS6_0166 PF00270 DEAD/DEAH box helicase MS6_0166 PF00271 Helicase conserved C-terminal domain MS6_0167 PF00085 Thioredoxin MS6_0168 PF07497 Rho termination factor, RNA-binding domain MS6_0168 PF07498 Rho termination factor, N-terminal domain MS6_0168 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MS6_0170 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MS6_0172 PF00175 Oxidoreductase NAD-binding domain MS6_0173 PF13091 PLD-like domain MS6_0175 PF01565 FAD binding domain MS6_0175 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MS6_0176 PF02237 Biotin protein ligase C terminal domain MS6_0176 PF08279 HTH domain MS6_0176 PF03099 Biotin/lipoate A/B protein ligase family MS6_0177 PF00485 Phosphoribulokinase / Uridine kinase family MS6_0178 PF03143 Elongation factor Tu C-terminal domain MS6_0178 PF03144 Elongation factor Tu domain 2 MS6_0178 PF00009 Elongation factor Tu GTP binding domain MS6_0179 PF00584 SecE/Sec61-gamma subunits of protein translocation complex MS6_0180 PF02357 Transcription termination factor nusG MS6_0180 PF00467 KOW motif MS6_0181 PF03946 Ribosomal protein L11, N-terminal domain MS6_0181 PF00298 Ribosomal protein L11, RNA binding domain MS6_0182 PF00687 Ribosomal protein L1p/L10e family MS6_0183 PF00466 Ribosomal protein L10 MS6_0184 PF00542 Ribosomal protein L7/L12 C-terminal domain MS6_0184 PF16320 Ribosomal protein L7/L12 dimerisation domain MS6_0185 PF04563 RNA polymerase beta subunit MS6_0185 PF04565 RNA polymerase Rpb2, domain 3 MS6_0185 PF10385 RNA polymerase beta subunit external 1 domain MS6_0185 PF00562 RNA polymerase Rpb2, domain 6 MS6_0185 PF04560 RNA polymerase Rpb2, domain 7 MS6_0185 PF04561 RNA polymerase Rpb2, domain 2 MS6_0186 PF04983 RNA polymerase Rpb1, domain 3 MS6_0186 PF05000 RNA polymerase Rpb1, domain 4 MS6_0186 PF00623 RNA polymerase Rpb1, domain 2 MS6_0186 PF04997 RNA polymerase Rpb1, domain 1 MS6_0186 PF04998 RNA polymerase Rpb1, domain 5 MS6_0187 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ MS6_0188 PF00293 NUDIX domain MS6_0188 PF09297 NADH pyrophosphatase zinc ribbon domain MS6_0189 PF01208 Uroporphyrinogen decarboxylase (URO-D) MS6_0190 PF08360 QacR-like protein, C-terminal region MS6_0190 PF00440 Bacterial regulatory proteins, tetR family MS6_0192 PF01551 Peptidase family M23 MS6_0193 PF06415 BPG-independent PGAM N-terminus (iPGM_N) MS6_0193 PF01676 Metalloenzyme superfamily MS6_0195 PF00939 Sodium:sulfate symporter transmembrane region MS6_0196 PF02666 Phosphatidylserine decarboxylase MS6_0197 PF03193 RsgA GTPase MS6_0198 PF00929 Exonuclease MS6_0199 PF08331 Domain of unknown function (DUF1730) MS6_0200 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE MS6_0201 PF01520 N-acetylmuramoyl-L-alanine amidase MS6_0202 PF01119 DNA mismatch repair protein, C-terminal domain MS6_0202 PF08676 MutL C terminal dimerisation domain MS6_0204 PF17209 Hfq protein MS6_0205 PF01926 50S ribosome-binding GTPase MS6_0205 PF13167 GTP-binding GTPase N-terminal MS6_0205 PF16360 GTP-binding GTPase Middle Region MS6_0206 PF12221 Bacterial membrane protein N terminal MS6_0206 PF01145 SPFH domain / Band 7 family MS6_0207 PF01145 SPFH domain / Band 7 family MS6_0208 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) MS6_0209 PF04102 SlyX MS6_0211 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MS6_0211 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MS6_0212 PF08348 YheO-like PAS domain MS6_0212 PF13309 HTH domain MS6_0213 PF02635 DsrE/DsrF-like family MS6_0214 PF02635 DsrE/DsrF-like family MS6_0216 PF00164 Ribosomal protein S12/S23 MS6_0217 PF00177 Ribosomal protein S7p/S5e MS6_0218 PF14492 Elongation Factor G, domain II MS6_0218 PF03144 Elongation factor Tu domain 2 MS6_0218 PF00679 Elongation factor G C-terminus MS6_0218 PF03764 Elongation factor G, domain IV MS6_0218 PF00009 Elongation factor Tu GTP binding domain MS6_0219 PF03143 Elongation factor Tu C-terminal domain MS6_0219 PF03144 Elongation factor Tu domain 2 MS6_0219 PF00009 Elongation factor Tu GTP binding domain MS6_0220 PF04324 BFD-like [2Fe-2S] binding domain MS6_0221 PF00210 Ferritin-like domain MS6_0222 PF01250 Ribosomal protein S6 MS6_0223 PF00436 Single-strand binding protein family MS6_0224 PF01084 Ribosomal protein S18 MS6_0225 PF01281 Ribosomal protein L9, N-terminal domain MS6_0225 PF03948 Ribosomal protein L9, C-terminal domain MS6_0227 PF00772 DnaB-like helicase N terminal domain MS6_0227 PF03796 DnaB-like helicase C terminal domain MS6_0228 PF00842 Alanine racemase, C-terminal domain MS6_0228 PF01168 Alanine racemase, N-terminal domain MS6_0229 PF01894 Uncharacterised protein family UPF0047 MS6_0230 PF00342 Phosphoglucose isomerase MS6_0231 PF12706 Beta-lactamase superfamily domain MS6_0233 PF01475 Ferric uptake regulator family MS6_0234 PF01207 Dihydrouridine synthase (Dus) MS6_0236 PF09583 Phage shock protein G (Phageshock_PspG) MS6_0240 PF00175 Oxidoreductase NAD-binding domain MS6_0240 PF00258 Flavodoxin MS6_0240 PF00667 FAD binding domain MS6_0241 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MS6_0241 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MS6_0242 PF01507 Phosphoadenosine phosphosulfate reductase family MS6_0243 PF00999 Sodium/hydrogen exchanger family MS6_0244 PF02574 Homocysteine S-methyltransferase MS6_0244 PF02607 B12 binding domain MS6_0244 PF02310 B12 binding domain MS6_0244 PF02965 Vitamin B12 dependent methionine synthase, activation domain MS6_0244 PF00809 Pterin binding enzyme MS6_0245 PF01842 ACT domain MS6_0245 PF00696 Amino acid kinase family MS6_0246 PF00266 Aminotransferase class-V MS6_0248 PF00005 ABC transporter MS6_0248 PF17760 UvrA interaction domain MS6_0248 PF17755 UvrA DNA-binding domain MS6_0249 PF00483 Nucleotidyl transferase MS6_0250 PF00196 Bacterial regulatory proteins, luxR family MS6_0251 PF00436 Single-strand binding protein family MS6_0252 PF17157 Gammaproteobacterial periplasmic sensor domain MS6_0252 PF00990 Diguanylate cyclase, GGDEF domain MS6_0252 PF00563 EAL domain MS6_0256 PF07660 Secretin and TonB N terminus short domain MS6_0256 PF00263 Bacterial type II and III secretion system protein MS6_0256 PF03958 Bacterial type II/III secretion system short domain MS6_0256 PF11741 AMIN domain MS6_0257 PF01471 Putative peptidoglycan binding domain MS6_0257 PF13401 AAA domain MS6_0259 PF00437 Type II/IV secretion system protein MS6_0260 PF00482 Type II secretion system (T2SS), protein F MS6_0263 PF00114 Pilin (bacterial filament) MS6_0263 PF07963 Prokaryotic N-terminal methylation motif MS6_0270 PF04085 rod shape-determining protein MreC MS6_0271 PF04093 rod shape-determining protein MreD MS6_0272 PF02545 Maf-like protein MS6_0273 PF10150 Ribonuclease E/G family MS6_0273 PF00575 S1 RNA binding domain MS6_0274 PF13502 AsmA-like C-terminal region MS6_0274 PF13116 Protein of unknown function MS6_0275 PF00795 Carbon-nitrogen hydrolase MS6_0276 PF01523 Putative modulator of DNA gyrase MS6_0278 PF06877 Regulator of ribonuclease activity B MS6_0281 PF00582 Universal stress protein family MS6_0283 PF16868 NMT1-like family MS6_0284 PF02863 Arginine repressor, C-terminal domain MS6_0284 PF01316 Arginine repressor, DNA binding domain MS6_0285 PF00056 lactate/malate dehydrogenase, NAD binding domain MS6_0285 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MS6_0286 PF13520 Amino acid permease MS6_0287 PF00348 Polyprenyl synthetase MS6_0288 PF00829 Ribosomal prokaryotic L21 protein MS6_0289 PF01016 Ribosomal L27 protein MS6_0290 PF01018 GTP1/OBG MS6_0290 PF01926 50S ribosome-binding GTPase MS6_0291 PF06738 Putative threonine/serine exporter MS6_0292 PF12821 Threonine/Serine exporter, ThrE MS6_0293 PF00186 Dihydrofolate reductase MS6_0294 PF00149 Calcineurin-like phosphoesterase MS6_0295 PF04379 ApaG domain MS6_0296 PF00398 Ribosomal RNA adenine dimethylase MS6_0297 PF04166 Pyridoxal phosphate biosynthetic protein PdxA MS6_0298 PF09312 SurA N-terminal domain MS6_0299 PF03968 OstA-like protein MS6_0299 PF04453 LPS transport system D MS6_0300 PF05099 Tellurite resistance protein TerB MS6_0300 PF00226 DnaJ domain MS6_0301 PF00672 HAMP domain MS6_0301 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_0301 PF12729 Four helix bundle sensory module for signal transduction MS6_0302 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain MS6_0302 PF01464 Transglycosylase SLT domain MS6_0303 PF04362 Bacterial Fe(2+) trafficking MS6_0304 PF00730 HhH-GPD superfamily base excision DNA repair protein MS6_0304 PF14815 NUDIX domain MS6_0304 PF10576 Iron-sulfur binding domain of endonuclease III MS6_0304 PF00633 Helix-hairpin-helix motif MS6_0305 PF02390 Putative methyltransferase MS6_0306 PF04960 Glutaminase MS6_0307 PF06969 HemN C-terminal domain MS6_0307 PF04055 Radical SAM superfamily MS6_0308 PF01725 Ham1 family MS6_0310 PF02594 Uncharacterised ACR, YggU family COG1872 MS6_0311 PF02325 YGGT family MS6_0312 PF14748 Pyrroline-5-carboxylate reductase dimerisation MS6_0312 PF03807 NADP oxidoreductase coenzyme F420-dependent MS6_0313 PF01168 Alanine racemase, N-terminal domain MS6_0314 PF00437 Type II/IV secretion system protein MS6_0315 PF00437 Type II/IV secretion system protein MS6_0317 PF00579 tRNA synthetases class I (W and Y) MS6_0317 PF01479 S4 domain MS6_0318 PF03652 Holliday junction resolvase MS6_0319 PF02622 Uncharacterized ACR, COG1678 MS6_0320 PF02951 Prokaryotic glutathione synthetase, N-terminal domain MS6_0320 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain MS6_0321 PF04452 RNA methyltransferase MS6_0322 PF04231 Endonuclease I MS6_0323 PF10263 SprT-like family MS6_0323 PF17283 SprT-like zinc ribbon domain MS6_0324 PF02773 S-adenosylmethionine synthetase, C-terminal domain MS6_0324 PF00438 S-adenosylmethionine synthetase, N-terminal domain MS6_0324 PF02772 S-adenosylmethionine synthetase, central domain MS6_0326 PF00456 Transketolase, thiamine diphosphate binding domain MS6_0326 PF02780 Transketolase, C-terminal domain MS6_0326 PF02779 Transketolase, pyrimidine binding domain MS6_0327 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_0327 PF03466 LysR substrate binding domain MS6_0328 PF07715 TonB-dependent Receptor Plug Domain MS6_0328 PF00593 TonB dependent receptor MS6_0329 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MS6_0329 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MS6_0330 PF00162 Phosphoglycerate kinase MS6_0331 PF01116 Fructose-bisphosphate aldolase class-II MS6_0332 PF05552 Conserved TM helix MS6_0332 PF00924 Mechanosensitive ion channel MS6_0333 PF01810 LysE type translocator MS6_0334 PF03466 LysR substrate binding domain MS6_0334 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_0335 PF04402 Protein of unknown function (DUF541) MS6_0337 PF02887 Pyruvate kinase, alpha/beta domain MS6_0337 PF00224 Pyruvate kinase, barrel domain MS6_0338 PF08220 DeoR-like helix-turn-helix domain MS6_0338 PF00455 DeoR C terminal sensor domain MS6_0339 PF01380 SIS domain MS6_0340 PF03480 Bacterial extracellular solute-binding protein, family 7 MS6_0342 PF04545 Sigma-70, region 4 MS6_0342 PF04546 Sigma-70, non-essential region MS6_0342 PF04539 Sigma-70 region 3 MS6_0342 PF04542 Sigma-70 region 2 MS6_0342 PF00140 Sigma-70 factor, region 1.2 MS6_0342 PF03979 Sigma-70 factor, region 1.1 MS6_0343 PF01807 CHC2 zinc finger MS6_0343 PF10410 DnaB-helicase binding domain of primase MS6_0343 PF08275 DNA primase catalytic core, N-terminal domain MS6_0343 PF08278 DNA primase DnaG DnaB-binding MS6_0344 PF09424 Yqey-like protein MS6_0345 PF01165 Ribosomal protein S21 MS6_0347 PF00814 Glycoprotease family MS6_0348 PF00561 alpha/beta hydrolase fold MS6_0349 PF02660 Glycerol-3-phosphate acyltransferase MS6_0350 PF02152 Dihydroneopterin aldolase MS6_0351 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MS6_0352 PF02673 Bacitracin resistance protein BacA MS6_0353 PF04977 Septum formation initiator MS6_0354 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MS6_0355 PF02542 YgbB family MS6_0356 PF01142 tRNA pseudouridine synthase D (TruD) MS6_0357 PF01975 Survival protein SurE MS6_0359 PF01551 Peptidase family M23 MS6_0359 PF01476 LysM domain MS6_0360 PF00140 Sigma-70 factor, region 1.2 MS6_0360 PF04542 Sigma-70 region 2 MS6_0360 PF04539 Sigma-70 region 3 MS6_0360 PF04545 Sigma-70, region 4 MS6_0361 PF05192 MutS domain III MS6_0361 PF05188 MutS domain II MS6_0361 PF00488 MutS domain V MS6_0361 PF01624 MutS domain I MS6_0361 PF05190 MutS family domain IV MS6_0362 PF00291 Pyridoxal-phosphate dependent enzyme MS6_0364 PF00528 Binding-protein-dependent transport system inner membrane component MS6_0365 PF00528 Binding-protein-dependent transport system inner membrane component MS6_0366 PF12857 TOBE-like domain MS6_0366 PF00005 ABC transporter MS6_0367 PF02464 Competence-damaged protein MS6_0368 PF00154 recA bacterial DNA recombination protein MS6_0369 PF02631 RecX family MS6_0370 PF01411 tRNA synthetases class II (A) MS6_0370 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MS6_0370 PF02272 DHHA1 domain MS6_0372 PF13840 ACT domain MS6_0372 PF00696 Amino acid kinase family MS6_0372 PF01842 ACT domain MS6_0373 PF02599 Global regulator protein family MS6_0374 PF04277 Oxaloacetate decarboxylase, gamma chain MS6_0375 PF02436 Conserved carboxylase domain MS6_0375 PF00364 Biotin-requiring enzyme MS6_0375 PF00682 HMGL-like MS6_0376 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit MS6_0378 PF09335 SNARE associated Golgi protein MS6_0379 PF00675 Insulinase (Peptidase family M16) MS6_0379 PF05193 Peptidase M16 inactive domain MS6_0380 PF04262 Glutamate-cysteine ligase MS6_0381 PF02664 S-Ribosylhomocysteinase (LuxS) MS6_0382 PF01595 Cyclin M transmembrane N-terminal domain MS6_0382 PF03471 Transporter associated domain MS6_0382 PF00571 CBS domain MS6_0383 PF01578 Cytochrome C assembly protein MS6_0384 PF00448 SRP54-type protein, GTPase domain MS6_0384 PF02881 SRP54-type protein, helical bundle domain MS6_0384 PF02978 Signal peptide binding domain MS6_0385 PF00886 Ribosomal protein S16 MS6_0386 PF05239 PRC-barrel domain MS6_0386 PF01782 RimM N-terminal domain MS6_0387 PF01746 tRNA (Guanine-1)-methyltransferase MS6_0388 PF01245 Ribosomal protein L19 MS6_0389 PF13180 PDZ domain MS6_0390 PF00595 PDZ domain MS6_0392 PF03969 AFG1-like ATPase MS6_0393 PF00572 Ribosomal protein L13 MS6_0394 PF00380 Ribosomal protein S9/S16 MS6_0395 PF00355 Rieske [2Fe-2S] domain MS6_0395 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal MS6_0396 PF00033 Cytochrome b/b6/petB MS6_0396 PF00032 Cytochrome b(C-terminal)/b6/petD MS6_0397 PF02167 Cytochrome C1 family MS6_0398 PF02798 Glutathione S-transferase, N-terminal domain MS6_0398 PF00043 Glutathione S-transferase, C-terminal domain MS6_0399 PF04386 Stringent starvation protein B MS6_0400 PF04972 BON domain MS6_0401 PF13580 SIS domain MS6_0402 PF02021 Uncharacterised protein family UPF0102 MS6_0403 PF04348 LppC putative lipoprotein MS6_0404 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MS6_0405 PF00440 Bacterial regulatory proteins, tetR family MS6_0406 PF00156 Phosphoribosyl transferase domain MS6_0407 PF00484 Carbonic anhydrase MS6_0408 PF01740 STAS domain MS6_0408 PF00916 Sulfate permease family MS6_0409 PF00005 ABC transporter MS6_0410 PF01061 ABC-2 type transporter MS6_0411 PF02569 Pantoate-beta-alanine ligase MS6_0412 PF02548 Ketopantoate hydroxymethyltransferase MS6_0413 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MS6_0414 PF12627 Probable RNA and SrmB- binding site of polymerase A MS6_0414 PF12626 Polymerase A arginine-rich C-terminus MS6_0414 PF01743 Poly A polymerase head domain MS6_0415 PF00749 tRNA synthetases class I (E and Q), catalytic domain MS6_0416 PF01258 Prokaryotic dksA/traR C4-type zinc finger MS6_0417 PF03749 Sugar fermentation stimulation protein RE domain MS6_0417 PF17746 SfsA N-terminal OB domain MS6_0419 PF00270 DEAD/DEAH box helicase MS6_0419 PF08482 ATP-dependent helicase C-terminal MS6_0419 PF00271 Helicase conserved C-terminal domain MS6_0419 PF04408 Helicase associated domain (HA2) MS6_0420 PF00905 Penicillin binding protein transpeptidase domain MS6_0420 PF00912 Transglycosylase MS6_0420 PF14814 Bifunctional transglycosylase second domain MS6_0421 PF01734 Patatin-like phospholipase MS6_0422 PF00330 Aconitase family (aconitate hydratase) MS6_0422 PF06434 Aconitate hydratase 2 N-terminus MS6_0422 PF11791 Aconitate B N-terminal domain MS6_0423 PF06062 Uncharacterised protein family (UPF0231) MS6_0424 PF00543 Nitrogen regulatory protein P-II MS6_0425 PF00909 Ammonium Transporter Family MS6_0426 PF13416 Bacterial extracellular solute-binding protein MS6_0428 PF00005 ABC transporter MS6_0428 PF08402 TOBE domain MS6_0429 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MS6_0429 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MS6_0429 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MS6_0429 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MS6_0430 PF06165 Glycosyltransferase family 36 MS6_0430 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain MS6_0431 PF00728 Glycosyl hydrolase family 20, catalytic domain MS6_0431 PF02838 Glycosyl hydrolase family 20, domain 2 MS6_0432 PF01869 BadF/BadG/BcrA/BcrD ATPase family MS6_0434 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MS6_0434 PF00005 ABC transporter MS6_0435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MS6_0435 PF00005 ABC transporter MS6_0436 PF00528 Binding-protein-dependent transport system inner membrane component MS6_0436 PF12911 N-terminal TM domain of oligopeptide transport permease C MS6_0437 PF00528 Binding-protein-dependent transport system inner membrane component MS6_0438 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MS6_0439 PF09308 LuxQ, periplasmic MS6_0439 PF00512 His Kinase A (phospho-acceptor) domain MS6_0439 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_0439 PF00072 Response regulator receiver domain MS6_0440 PF05175 Methyltransferase small domain MS6_0440 PF08468 Methyltransferase small domain N-terminal MS6_0441 PF01594 AI-2E family transporter MS6_0443 PF00202 Aminotransferase class-III MS6_0445 PF01521 Iron-sulphur cluster biosynthesis MS6_0447 PF00873 AcrB/AcrD/AcrF family MS6_0448 PF04225 Opacity-associated protein A LysM-like domain MS6_0448 PF01551 Peptidase family M23 MS6_0449 PF01479 S4 domain MS6_0449 PF00579 tRNA synthetases class I (W and Y) MS6_0450 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family MS6_0451 PF13609 Gram-negative porin MS6_0452 PF03449 Transcription elongation factor, N-terminal MS6_0452 PF01272 Transcription elongation factor, GreA/GreB, C-term MS6_0453 PF01985 CRS1 / YhbY (CRM) domain MS6_0454 PF01728 FtsJ-like methyltransferase MS6_0455 PF01434 Peptidase family M41 MS6_0455 PF06480 FtsH Extracellular MS6_0455 PF17862 AAA+ lid domain MS6_0455 PF00004 ATPase family associated with various cellular activities (AAA) MS6_0456 PF00809 Pterin binding enzyme MS6_0457 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MS6_0457 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MS6_0457 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MS6_0457 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MS6_0458 PF03840 Preprotein translocase SecG subunit MS6_0459 PF17384 RimP C-terminal SH3 domain MS6_0459 PF02576 RimP N-terminal domain MS6_0460 PF13184 NusA-like KH domain MS6_0460 PF08529 NusA N-terminal domain MS6_0460 PF00575 S1 RNA binding domain MS6_0461 PF08364 Bacterial translation initiation factor IF-2 associated region MS6_0461 PF11987 Translation-initiation factor 2 MS6_0461 PF04760 Translation initiation factor IF-2, N-terminal region MS6_0461 PF00009 Elongation factor Tu GTP binding domain MS6_0462 PF02033 Ribosome-binding factor A MS6_0463 PF16198 tRNA pseudouridylate synthase B C-terminal domain MS6_0463 PF01509 TruB family pseudouridylate synthase (N terminal domain) MS6_0463 PF09157 Pseudouridine synthase II TruB, C-terminal MS6_0464 PF00312 Ribosomal protein S15 MS6_0465 PF03725 3' exoribonuclease family, domain 2 MS6_0465 PF01138 3' exoribonuclease family, domain 1 MS6_0465 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MS6_0465 PF00013 KH domain MS6_0465 PF00575 S1 RNA binding domain MS6_0466 PF13181 Tetratricopeptide repeat MS6_0466 PF07719 Tetratricopeptide repeat MS6_0471 PF00563 EAL domain MS6_0471 PF00990 Diguanylate cyclase, GGDEF domain MS6_0471 PF03707 Bacterial signalling protein N terminal repeat MS6_0474 PF13508 Acetyltransferase (GNAT) domain MS6_0477 PF00990 Diguanylate cyclase, GGDEF domain MS6_0477 PF00563 EAL domain MS6_0477 PF03707 Bacterial signalling protein N terminal repeat MS6_0478 PF00009 Elongation factor Tu GTP binding domain MS6_0478 PF16658 Class II release factor RF3, C-terminal domain MS6_0478 PF03144 Elongation factor Tu domain 2 MS6_0479 PF00271 Helicase conserved C-terminal domain MS6_0479 PF00270 DEAD/DEAH box helicase MS6_0480 PF05175 Methyltransferase small domain MS6_0481 PF05525 Branched-chain amino acid transport protein MS6_0482 PF00472 RF-1 domain MS6_0482 PF03462 PCRF domain MS6_0483 PF01336 OB-fold nucleic acid binding domain MS6_0483 PF00152 tRNA synthetases class II (D, K and N) MS6_0484 PF02954 Bacterial regulatory protein, Fis family MS6_0484 PF00158 Sigma-54 interaction domain MS6_0484 PF00072 Response regulator receiver domain MS6_0488 PF00248 Aldo/keto reductase family MS6_0489 PF02976 DNA mismatch repair enzyme MutH MS6_0492 PF00293 NUDIX domain MS6_0493 PF02896 PEP-utilising enzyme, TIM barrel domain MS6_0493 PF00391 PEP-utilising enzyme, mobile domain MS6_0493 PF05524 PEP-utilising enzyme, N-terminal MS6_0493 PF01590 GAF domain MS6_0494 PF01925 Sulfite exporter TauE/SafE MS6_0495 PF01790 Prolipoprotein diacylglyceryl transferase MS6_0496 PF00303 Thymidylate synthase MS6_0497 PF02690 Na+/Pi-cotransporter MS6_0498 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_0498 PF03466 LysR substrate binding domain MS6_0499 PF01022 Bacterial regulatory protein, arsR family MS6_0500 PF01649 Ribosomal protein S20 MS6_0501 PF03023 Lipid II flippase MurJ MS6_0502 PF06574 FAD synthetase MS6_0502 PF01687 Riboflavin kinase MS6_0503 PF00133 tRNA synthetases class I (I, L, M and V) MS6_0503 PF08264 Anticodon-binding domain of tRNA MS6_0503 PF06827 Zinc finger found in FPG and IleRS MS6_0504 PF01252 Signal peptidase (SPase) II MS6_0505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MS6_0506 PF02401 LytB protein MS6_0507 PF02554 Carbon starvation protein CstA MS6_0510 PF13580 SIS domain MS6_0511 PF03702 Anhydro-N-acetylmuramic acid kinase MS6_0512 PF00933 Glycosyl hydrolase family 3 N terminal domain MS6_0513 PF00072 Response regulator receiver domain MS6_0513 PF04397 LytTr DNA-binding domain MS6_0514 PF07694 5TMR of 5TMR-LYT MS6_0514 PF06580 Histidine kinase MS6_0515 PF00793 DAHP synthetase I family MS6_0516 PF01817 Chorismate mutase type II MS6_0516 PF02153 Prephenate dehydrogenase MS6_0517 PF07238 PilZ domain MS6_0518 PF12848 ABC transporter MS6_0518 PF00005 ABC transporter MS6_0519 PF01464 Transglycosylase SLT domain MS6_0519 PF14718 Soluble lytic murein transglycosylase L domain MS6_0520 PF01371 Trp repressor protein MS6_0521 PF01931 Protein of unknown function DUF84 MS6_0522 PF00563 EAL domain MS6_0522 PF00990 Diguanylate cyclase, GGDEF domain MS6_0523 PF13416 Bacterial extracellular solute-binding protein MS6_0524 PF00800 Prephenate dehydratase MS6_0524 PF01817 Chorismate mutase type II MS6_0525 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MS6_0527 PF13525 Outer membrane lipoprotein MS6_0528 PF01479 S4 domain MS6_0528 PF00849 RNA pseudouridylate synthase MS6_0530 PF17871 AAA lid domain MS6_0530 PF10431 C-terminal, D2-small domain, of ClpB protein MS6_0530 PF07724 AAA domain (Cdc48 subfamily) MS6_0530 PF00004 ATPase family associated with various cellular activities (AAA) MS6_0530 PF02861 Clp amino terminal domain, pathogenicity island component MS6_0532 PF00881 Nitroreductase family MS6_0533 PF00037 4Fe-4S binding domain MS6_0535 PF04381 Putative exonuclease, RdgC MS6_0536 PF00486 Transcriptional regulatory protein, C terminal MS6_0536 PF00072 Response regulator receiver domain MS6_0537 PF11808 Phosphate regulon sensor protein PhoR MS6_0537 PF00989 PAS fold MS6_0537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_0537 PF00512 His Kinase A (phospho-acceptor) domain MS6_0538 PF12849 PBP superfamily domain MS6_0539 PF02541 Ppx/GppA phosphatase family MS6_0540 PF13089 Polyphosphate kinase N-terminal domain MS6_0540 PF17941 Polyphosphate kinase C-terminal domain 1 MS6_0540 PF02503 Polyphosphate kinase middle domain MS6_0540 PF13090 Polyphosphate kinase C-terminal domain 2 MS6_0541 PF00528 Binding-protein-dependent transport system inner membrane component MS6_0542 PF00528 Binding-protein-dependent transport system inner membrane component MS6_0543 PF00005 ABC transporter MS6_0544 PF01895 PhoU domain MS6_0545 PF03976 Polyphosphate kinase 2 (PPK2) MS6_0546 PF03932 CutC family MS6_0547 PF10417 C-terminal domain of 1-Cys peroxiredoxin MS6_0547 PF00578 AhpC/TSA family MS6_0548 PF03466 LysR substrate binding domain MS6_0548 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_0549 PF01274 Malate synthase MS6_0550 PF00463 Isocitrate lyase family MS6_0551 PF00571 CBS domain MS6_0552 PF02547 Queuosine biosynthesis protein MS6_0553 PF01702 Queuine tRNA-ribosyltransferase MS6_0554 PF02699 Preprotein translocase subunit MS6_0555 PF07549 SecD/SecF GG Motif MS6_0555 PF02355 Protein export membrane protein MS6_0555 PF13721 SecD export protein N-terminal TM region MS6_0556 PF07549 SecD/SecF GG Motif MS6_0556 PF02355 Protein export membrane protein MS6_0557 PF00459 Inositol monophosphatase family MS6_0558 PF00588 SpoU rRNA Methylase family MS6_0559 PF02082 Transcriptional regulator MS6_0560 PF00266 Aminotransferase class-V MS6_0561 PF01592 NifU-like N terminal domain MS6_0562 PF01521 Iron-sulphur cluster biosynthesis MS6_0563 PF07743 HSCB C-terminal oligomerisation domain MS6_0563 PF00226 DnaJ domain MS6_0564 PF00012 Hsp70 protein MS6_0565 PF00111 2Fe-2S iron-sulfur cluster binding domain MS6_0566 PF04384 Iron-sulphur cluster assembly MS6_0567 PF12404 Peptidase MS6_0567 PF00883 Cytosol aminopeptidase family, catalytic domain MS6_0568 PF00334 Nucleoside diphosphate kinase MS6_0569 PF04055 Radical SAM superfamily MS6_0570 PF13464 Domain of unknown function (DUF4115) MS6_0571 PF04551 GcpE protein MS6_0572 PF13393 Histidyl-tRNA synthetase MS6_0572 PF03129 Anticodon binding domain MS6_0573 PF09976 Tetratricopeptide repeat-like domain MS6_0574 PF13360 PQQ-like domain MS6_0575 PF01926 50S ribosome-binding GTPase MS6_0575 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MS6_0578 PF13742 OB-fold nucleic acid binding domain MS6_0578 PF02601 Exonuclease VII, large subunit MS6_0579 PF00571 CBS domain MS6_0579 PF00478 IMP dehydrogenase / GMP reductase domain MS6_0580 PF00958 GMP synthase C terminal domain MS6_0580 PF00117 Glutamine amidotransferase class-I MS6_0580 PF02540 NAD synthase MS6_0581 PF00704 Glycosyl hydrolases family 18 MS6_0581 PF06483 Chitinase C MS6_0582 PF01184 GPR1/FUN34/yaaH family MS6_0583 PF00550 Phosphopantetheine attachment site MS6_0583 PF00857 Isochorismatase family MS6_0584 PF13193 AMP-binding enzyme C-terminal domain MS6_0584 PF00501 AMP-binding enzyme MS6_0585 PF00425 chorismate binding enzyme MS6_0588 PF01497 Periplasmic binding protein MS6_0589 PF01032 FecCD transport family MS6_0590 PF01032 FecCD transport family MS6_0591 PF00005 ABC transporter MS6_0592 PF01648 4'-phosphopantetheinyl transferase superfamily MS6_0592 PF17837 4'-phosphopantetheinyl transferase N-terminal domain MS6_0593 PF03466 LysR substrate binding domain MS6_0593 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_0594 PF14864 Alkyl sulfatase C-terminal MS6_0594 PF00753 Metallo-beta-lactamase superfamily MS6_0594 PF14863 Alkyl sulfatase dimerisation MS6_0595 PF01235 Sodium:alanine symporter family MS6_0596 PF01266 FAD dependent oxidoreductase MS6_0597 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_0597 PF03466 LysR substrate binding domain MS6_0600 PF00072 Response regulator receiver domain MS6_0600 PF12431 Transcriptional regulator MS6_0601 PF17203 Single cache domain 3 MS6_0601 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_0602 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit MS6_0603 PF00364 Biotin-requiring enzyme MS6_0603 PF00682 HMGL-like MS6_0603 PF02436 Conserved carboxylase domain MS6_0604 PF04277 Oxaloacetate decarboxylase, gamma chain MS6_0605 PF03390 2-hydroxycarboxylate transporter family MS6_0606 PF08218 Citrate lyase ligase C-terminal domain MS6_0607 PF06857 Malonate decarboxylase delta subunit (MdcD) MS6_0608 PF03328 HpcH/HpaI aldolase/citrate lyase family MS6_0609 PF04223 Citrate lyase, alpha subunit (CitF) MS6_0610 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase MS6_0611 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase MS6_0613 PF08032 RNA 2'-O ribose methyltransferase substrate binding MS6_0613 PF00588 SpoU rRNA Methylase family MS6_0614 PF00037 4Fe-4S binding domain MS6_0614 PF11953 Domain of unknown function (DUF3470) MS6_0624 PF13737 Transposase DDE domain MS6_0625 PF13737 Transposase DDE domain MS6_0626 PF00171 Aldehyde dehydrogenase family MS6_0627 PF00041 Fibronectin type III domain MS6_0627 PF12561 ToxR activated gene A lipoprotein domain MS6_0630 PF08534 Redoxin MS6_0631 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_0632 PF00486 Transcriptional regulatory protein, C terminal MS6_0634 PF05946 Toxin-coregulated pilus subunit TcpA MS6_0634 PF07963 Prokaryotic N-terminal methylation motif MS6_0636 PF10671 Toxin co-regulated pilus biosynthesis protein Q MS6_0640 PF17456 Toxin-coregulated pilus protein S MS6_0641 PF00437 Type II/IV secretion system protein MS6_0642 PF00482 Type II secretion system (T2SS), protein F MS6_0643 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F MS6_0644 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family MS6_0645 PF06750 Bacterial Peptidase A24 N-terminal domain MS6_0645 PF01478 Type IV leader peptidase family MS6_0646 PF02743 Cache domain MS6_0646 PF00672 HAMP domain MS6_0646 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_0648 PF04225 Opacity-associated protein A LysM-like domain MS6_0648 PF01551 Peptidase family M23 MS6_0650 PF13402 Peptidase M60, enhancin and enhancin-like MS6_0650 PF17291 N-terminal domain of M60-like peptidases MS6_0650 PF13322 Domain of unknown function (DUF4092) MS6_0652 PF13356 Arm DNA-binding domain MS6_0652 PF00589 Phage integrase family MS6_0653 PF01668 SmpB protein MS6_0654 PF03364 Polyketide cyclase / dehydrase and lipid transport MS6_0655 PF03658 RnfH family Ubiquitin MS6_0656 PF04355 SmpA / OmlA family MS6_0657 PF02463 RecF/RecN/SMC N terminal domain MS6_0658 PF01513 ATP-NAD kinase MS6_0659 PF01025 GrpE MS6_0661 PF00012 Hsp70 protein MS6_0662 PF00684 DnaJ central domain MS6_0662 PF00226 DnaJ domain MS6_0662 PF01556 DnaJ C terminal domain MS6_0663 PF00114 Pilin (bacterial filament) MS6_0663 PF07963 Prokaryotic N-terminal methylation motif MS6_0668 PF03806 AbgT putative transporter family MS6_0669 PF14437 MafB19-like deaminase MS6_0671 PF01464 Transglycosylase SLT domain MS6_0671 PF00497 Bacterial extracellular solute-binding proteins, family 3 MS6_0674 PF02769 AIR synthase related protein, C-terminal domain MS6_0674 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MS6_0674 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal MS6_0676 PF06786 Uncharacterised protein family (UPF0253) MS6_0678 PF04073 Aminoacyl-tRNA editing domain MS6_0678 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MS6_0678 PF03129 Anticodon binding domain MS6_0679 PF01980 tRNA-methyltransferase O MS6_0679 PF18389 TrmO C-terminal domain MS6_0680 PF01197 Ribosomal protein L31 MS6_0681 PF00444 Ribosomal protein L36 MS6_0682 PF03806 AbgT putative transporter family MS6_0683 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 MS6_0685 PF13302 Acetyltransferase (GNAT) domain MS6_0688 PF04287 tRNA pseudouridine synthase C MS6_0689 PF00849 RNA pseudouridylate synthase MS6_0690 PF13292 1-deoxy-D-xylulose-5-phosphate synthase MS6_0690 PF02779 Transketolase, pyrimidine binding domain MS6_0690 PF02780 Transketolase, C-terminal domain MS6_0691 PF00348 Polyprenyl synthetase MS6_0692 PF02609 Exonuclease VII small subunit MS6_0693 PF01618 MotA/TolQ/ExbB proton channel family MS6_0695 PF02926 THUMP domain MS6_0695 PF02568 Thiamine biosynthesis protein (ThiI) MS6_0696 PF03466 LysR substrate binding domain MS6_0696 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_0697 PF04241 Protein of unknown function (DUF423) MS6_0698 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MS6_0698 PF01367 5'-3' exonuclease, C-terminal SAM fold MS6_0699 PF03641 Possible lysine decarboxylase MS6_0699 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases MS6_0699 PF11892 Domain of unknown function (DUF3412) MS6_0700 PF00990 Diguanylate cyclase, GGDEF domain MS6_0702 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term MS6_0702 PF14489 QueF-like protein MS6_0703 PF07348 Syd protein (SUKH-2) MS6_0704 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) MS6_0705 PF03180 NLPA lipoprotein MS6_0706 PF00528 Binding-protein-dependent transport system inner membrane component MS6_0707 PF09383 NIL domain MS6_0707 PF00005 ABC transporter MS6_0709 PF00356 Bacterial regulatory proteins, lacI family MS6_0710 PF02378 Phosphotransferase system, EIIC MS6_0710 PF00367 phosphotransferase system, EIIB MS6_0711 PF16657 Maltogenic Amylase, C-terminal domain MS6_0711 PF00128 Alpha amylase, catalytic domain MS6_0712 PF13533 Biotin-lipoyl like MS6_0713 PF00873 AcrB/AcrD/AcrF family MS6_0714 PF01451 Low molecular weight phosphotyrosine protein phosphatase MS6_0715 PF02350 UDP-N-acetylglucosamine 2-epimerase MS6_0716 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MS6_0716 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MS6_0716 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MS6_0717 PF12464 Maltose acetyltransferase MS6_0717 PF14602 Hexapeptide repeat of succinyl-transferase MS6_0721 PF00132 Bacterial transferase hexapeptide (six repeats) MS6_0721 PF06426 Serine acetyltransferase, N-terminal MS6_0723 PF00534 Glycosyl transferases group 1 MS6_0723 PF00862 Sucrose synthase MS6_0725 PF03808 Glycosyl transferase WecB/TagA/CpsF family MS6_0728 PF17945 Beta/Gamma crystallin MS6_0728 PF12561 ToxR activated gene A lipoprotein domain MS6_0731 PF02397 Bacterial sugar transferase MS6_0733 PF10531 SLBB domain MS6_0733 PF18412 Outer-membrane lipoprotein Wza C-terminal domain MS6_0733 PF02563 Polysaccharide biosynthesis/export protein MS6_0734 PF02706 Chain length determinant protein MS6_0734 PF13614 AAA domain MS6_0734 PF13807 G-rich domain on putative tyrosine kinase MS6_0738 PF00464 Serine hydroxymethyltransferase MS6_0740 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family MS6_0740 PF04055 Radical SAM superfamily MS6_0741 PF03099 Biotin/lipoate A/B protein ligase family MS6_0742 PF04359 Protein of unknown function (DUF493) MS6_0743 PF00768 D-alanyl-D-alanine carboxypeptidase MS6_0743 PF07943 Penicillin-binding protein 5, C-terminal domain MS6_0744 PF03330 Lytic transglycolase MS6_0744 PF05036 Sporulation related domain MS6_0745 PF01098 Cell cycle protein MS6_0746 PF00905 Penicillin binding protein transpeptidase domain MS6_0746 PF03717 Penicillin-binding Protein dimerisation domain MS6_0747 PF02590 Predicted SPOUT methyltransferase MS6_0749 PF06144 DNA polymerase III, delta subunit MS6_0749 PF14840 Processivity clamp loader gamma complex DNA pol III C-term MS6_0750 PF04390 Lipopolysaccharide-assembly MS6_0751 PF00133 tRNA synthetases class I (I, L, M and V) MS6_0751 PF08264 Anticodon-binding domain of tRNA MS6_0751 PF13603 Leucyl-tRNA synthetase, Domain 2 MS6_0752 PF07295 Zinc-ribbon containing domain MS6_0753 PF00795 Carbon-nitrogen hydrolase MS6_0754 PF00571 CBS domain MS6_0754 PF03471 Transporter associated domain MS6_0755 PF02130 Uncharacterized protein family UPF0054 MS6_0756 PF02562 PhoH-like protein MS6_0757 PF01938 TRAM domain MS6_0757 PF00919 Uncharacterized protein family UPF0004 MS6_0757 PF04055 Radical SAM superfamily MS6_0758 PF01494 FAD binding domain MS6_0759 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MS6_0760 PF05524 PEP-utilising enzyme, N-terminal MS6_0760 PF00391 PEP-utilising enzyme, mobile domain MS6_0760 PF02896 PEP-utilising enzyme, TIM barrel domain MS6_0761 PF00381 PTS HPr component phosphorylation site MS6_0762 PF00291 Pyridoxal-phosphate dependent enzyme MS6_0764 PF04354 ZipA, C-terminal FtsZ-binding domain MS6_0765 PF00533 BRCA1 C Terminus (BRCT) domain MS6_0765 PF12826 Helix-hairpin-helix motif MS6_0765 PF01653 NAD-dependent DNA ligase adenylation domain MS6_0765 PF03120 NAD-dependent DNA ligase OB-fold domain MS6_0765 PF03119 NAD-dependent DNA ligase C4 zinc finger domain MS6_0766 PF13609 Gram-negative porin MS6_0768 PF13411 MerR HTH family regulatory protein MS6_0769 PF01957 NfeD-like C-terminal, partner-binding MS6_0770 PF01145 SPFH domain / Band 7 family MS6_0770 PF16200 C-terminal region of band_7 MS6_0771 PF00085 Thioredoxin MS6_0773 PF00106 short chain dehydrogenase MS6_0774 PF08338 Domain of unknown function (DUF1731) MS6_0774 PF01370 NAD dependent epimerase/dehydratase family MS6_0775 PF12850 Calcineurin-like phosphoesterase superfamily domain MS6_0777 PF17323 Trans-membrane regulatory protein ToxS MS6_0778 PF00486 Transcriptional regulatory protein, C terminal MS6_0779 PF00183 Hsp90 protein MS6_0779 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_0780 PF05191 Adenylate kinase, active site lid MS6_0781 PF00762 Ferrochelatase MS6_0782 PF00854 POT family MS6_0784 PF02357 Transcription termination factor nusG MS6_0785 PF13537 Glutamine amidotransferase domain MS6_0785 PF00733 Asparagine synthase MS6_0786 PF02254 TrkA-N domain MS6_0786 PF00999 Sodium/hydrogen exchanger family MS6_0787 PF00480 ROK family MS6_0787 PF01047 MarR family MS6_0788 PF01979 Amidohydrolase family MS6_0789 PF02378 Phosphotransferase system, EIIC MS6_0789 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MS6_0789 PF00367 phosphotransferase system, EIIB MS6_0790 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain MS6_0790 PF00749 tRNA synthetases class I (E and Q), catalytic domain MS6_0793 PF01416 tRNA pseudouridine synthase MS6_0794 PF17848 Acetyl-coA carboxylase zinc finger domain MS6_0794 PF01039 Carboxyl transferase domain MS6_0795 PF08245 Mur ligase middle domain MS6_0795 PF02875 Mur ligase family, glutamate ligase domain MS6_0796 PF05036 Sporulation related domain MS6_0797 PF02674 Colicin V production protein MS6_0798 PF00156 Phosphoribosyl transferase domain MS6_0799 PF13726 Na+-H+ antiporter family MS6_0799 PF03553 Na+/H+ antiporter family MS6_0800 PF00929 Exonuclease MS6_0802 PF18393 MotY N-terminal domain MS6_0802 PF00691 OmpA family MS6_0803 PF10952 Protein of unknown function (DUF2753) MS6_0804 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MS6_0805 PF10576 Iron-sulfur binding domain of endonuclease III MS6_0805 PF00633 Helix-hairpin-helix motif MS6_0805 PF00730 HhH-GPD superfamily base excision DNA repair protein MS6_0806 PF02508 Rnf-Nqr subunit, membrane protein MS6_0807 PF04205 FMN-binding domain MS6_0808 PF03116 NQR2, RnfD, RnfE family MS6_0809 PF10531 SLBB domain MS6_0809 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MS6_0809 PF13375 RnfC Barrel sandwich hybrid domain MS6_0809 PF12838 4Fe-4S dicluster domain MS6_0810 PF04060 Putative Fe-S cluster MS6_0811 PF02508 Rnf-Nqr subunit, membrane protein MS6_0813 PF17757 UvrB interaction domain MS6_0813 PF02151 UvrB/uvrC motif MS6_0813 PF12344 Ultra-violet resistance protein B MS6_0813 PF04851 Type III restriction enzyme, res subunit MS6_0813 PF00271 Helicase conserved C-terminal domain MS6_0814 PF00158 Sigma-54 interaction domain MS6_0814 PF00072 Response regulator receiver domain MS6_0814 PF02954 Bacterial regulatory protein, Fis family MS6_0815 PF01627 Hpt domain MS6_0816 PF01933 Uncharacterised protein family UPF0052 MS6_0817 PF04055 Radical SAM superfamily MS6_0817 PF06463 Molybdenum Cofactor Synthesis C MS6_0818 PF00994 Probable molybdopterin binding domain MS6_0819 PF01967 MoaC family MS6_0820 PF02597 ThiS family MS6_0821 PF02391 MoaE protein MS6_0822 PF00990 Diguanylate cyclase, GGDEF domain MS6_0822 PF07694 5TMR of 5TMR-LYT MS6_0823 PF07085 DRTGG domain MS6_0823 PF03061 Thioesterase superfamily MS6_0823 PF00571 CBS domain MS6_0823 PF00392 Bacterial regulatory proteins, gntR family MS6_0824 PF00403 Heavy-metal-associated domain MS6_0825 PF01048 Phosphorylase superfamily MS6_0827 PF01588 Putative tRNA binding domain MS6_0827 PF09334 tRNA synthetases class I (M) MS6_0828 PF10609 NUBPL iron-transfer P-loop NTPase MS6_0829 PF00485 Phosphoribulokinase / Uridine kinase family MS6_0830 PF05170 AsmA family MS6_0831 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP MS6_0831 PF12557 Cob(I)alamin adenosyltransferase N terminal MS6_0832 PF01451 Low molecular weight phosphotyrosine protein phosphatase MS6_0833 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) MS6_0834 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) MS6_0836 PF08281 Sigma-70, region 4 MS6_0836 PF04542 Sigma-70 region 2 MS6_0838 PF00108 Thiolase, N-terminal domain MS6_0838 PF02803 Thiolase, C-terminal domain MS6_0839 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MS6_0839 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MS6_0839 PF00378 Enoyl-CoA hydratase/isomerase MS6_0840 PF00881 Nitroreductase family MS6_0841 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_0841 PF03466 LysR substrate binding domain MS6_0842 PF00072 Response regulator receiver domain MS6_0845 PF00156 Phosphoribosyl transferase domain MS6_0846 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding MS6_0846 PF12170 DNA polymerase III tau subunit V interacting with alpha MS6_0846 PF12169 DNA polymerase III subunits gamma and tau domain III MS6_0847 PF02575 YbaB/EbfC DNA-binding family MS6_0848 PF13662 Toprim domain MS6_0848 PF02132 RecR protein MS6_0849 PF03692 Putative zinc- or iron-chelating domain MS6_0850 PF03692 Putative zinc- or iron-chelating domain MS6_0851 PF00106 short chain dehydrogenase MS6_0852 PF01343 Peptidase family S49 MS6_0852 PF08496 Peptidase family S49 N-terminal MS6_0853 PF00291 Pyridoxal-phosphate dependent enzyme MS6_0854 PF01037 Lrp/AsnC ligand binding domain MS6_0854 PF13404 AsnC-type helix-turn-helix domain MS6_0857 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MS6_0859 PF00990 Diguanylate cyclase, GGDEF domain MS6_0859 PF08448 PAS fold MS6_0860 PF01022 Bacterial regulatory protein, arsR family MS6_0861 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MS6_0861 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MS6_0865 PF00704 Glycosyl hydrolases family 18 MS6_0865 PF06483 Chitinase C MS6_0867 PF01161 Phosphatidylethanolamine-binding protein MS6_0871 PF01300 Telomere recombination MS6_0871 PF03481 Putative GTP-binding controlling metal-binding MS6_0874 PF00072 Response regulator receiver domain MS6_0876 PF00989 PAS fold MS6_0876 PF00512 His Kinase A (phospho-acceptor) domain MS6_0876 PF13188 PAS domain MS6_0876 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_0876 PF13426 PAS domain MS6_0877 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_0877 PF00512 His Kinase A (phospho-acceptor) domain MS6_0878 PF13188 PAS domain MS6_0878 PF03707 Bacterial signalling protein N terminal repeat MS6_0878 PF00990 Diguanylate cyclase, GGDEF domain MS6_0878 PF00563 EAL domain MS6_0879 PF02954 Bacterial regulatory protein, Fis family MS6_0879 PF00158 Sigma-54 interaction domain MS6_0879 PF00072 Response regulator receiver domain MS6_0880 PF00072 Response regulator receiver domain MS6_0880 PF13188 PAS domain MS6_0880 PF08448 PAS fold MS6_0880 PF00512 His Kinase A (phospho-acceptor) domain MS6_0880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_0882 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MS6_0883 PF00528 Binding-protein-dependent transport system inner membrane component MS6_0884 PF12911 N-terminal TM domain of oligopeptide transport permease C MS6_0884 PF00528 Binding-protein-dependent transport system inner membrane component MS6_0885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MS6_0885 PF00005 ABC transporter MS6_0886 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MS6_0886 PF00005 ABC transporter MS6_0887 PF13409 Glutathione S-transferase, N-terminal domain MS6_0888 PF07085 DRTGG domain MS6_0888 PF01515 Phosphate acetyl/butaryl transferase MS6_0889 PF00871 Acetokinase family MS6_0890 PF04217 Protein of unknown function, DUF412 MS6_0891 PF09905 DNA-binding protein VF530 MS6_0893 PF02653 Branched-chain amino acid transport system / permease component MS6_0894 PF00005 ABC transporter MS6_0895 PF00990 Diguanylate cyclase, GGDEF domain MS6_0896 PF01207 Dihydrouridine synthase (Dus) MS6_0897 PF02810 SEC-C motif MS6_0897 PF07516 SecA Wing and Scaffold domain MS6_0897 PF01043 SecA preprotein cross-linking domain MS6_0897 PF07517 SecA DEAD-like domain MS6_0898 PF03548 Outer membrane lipoprotein carrier protein LolA MS6_0899 PF12002 MgsA AAA+ ATPase C terminal MS6_0899 PF00004 ATPase family associated with various cellular activities (AAA) MS6_0899 PF16193 AAA C-terminal domain MS6_0900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MS6_0900 PF02403 Seryl-tRNA synthetase N-terminal domain MS6_0901 PF00202 Aminotransferase class-III MS6_0902 PF04055 Radical SAM superfamily MS6_0902 PF06968 Biotin and Thiamin Synthesis associated domain MS6_0903 PF00155 Aminotransferase class I and II MS6_0904 PF08241 Methyltransferase domain MS6_0907 PF01435 Peptidase family M48 MS6_0909 PF00106 short chain dehydrogenase MS6_0914 PF16036 Chalcone isomerase-like MS6_0916 PF08328 Adenylosuccinate lyase C-terminal MS6_0916 PF00206 Lyase MS6_0917 PF04356 Protein of unknown function (DUF489) MS6_0919 PF00294 pfkB family carbohydrate kinase MS6_0920 PF00816 H-NS histone family MS6_0921 PF03553 Na+/H+ antiporter family MS6_0922 PF01634 ATP phosphoribosyltransferase MS6_0922 PF08029 HisG, C-terminal domain MS6_0923 PF00815 Histidinol dehydrogenase MS6_0924 PF00155 Aminotransferase class I and II MS6_0925 PF00475 Imidazoleglycerol-phosphate dehydratase MS6_0925 PF08645 Polynucleotide kinase 3 phosphatase MS6_0926 PF00117 Glutamine amidotransferase class-I MS6_0927 PF00977 Histidine biosynthesis protein MS6_0928 PF00977 Histidine biosynthesis protein MS6_0929 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase MS6_0929 PF01502 Phosphoribosyl-AMP cyclohydrolase MS6_0930 PF00849 RNA pseudouridylate synthase MS6_0931 PF03971 Monomeric isocitrate dehydrogenase MS6_0932 PF00313 'Cold-shock' DNA-binding domain MS6_0933 PF02617 ATP-dependent Clp protease adaptor protein ClpS MS6_0934 PF10431 C-terminal, D2-small domain, of ClpB protein MS6_0934 PF00004 ATPase family associated with various cellular activities (AAA) MS6_0934 PF07724 AAA domain (Cdc48 subfamily) MS6_0934 PF17871 AAA lid domain MS6_0934 PF02861 Clp amino terminal domain, pathogenicity island component MS6_0935 PF06826 Predicted Permease Membrane Region MS6_0935 PF02080 TrkA-C domain MS6_0936 PF00462 Glutaredoxin MS6_0937 PF00465 Iron-containing alcohol dehydrogenase MS6_0937 PF00171 Aldehyde dehydrogenase family MS6_0938 PF01380 SIS domain MS6_0938 PF01418 Helix-turn-helix domain, rpiR family MS6_0940 PF00282 Pyridoxal-dependent decarboxylase conserved domain MS6_0942 PF03956 Lysine exporter LysO MS6_0944 PF04993 TfoX N-terminal domain MS6_0944 PF04994 TfoX C-terminal domain MS6_0947 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_0947 PF00512 His Kinase A (phospho-acceptor) domain MS6_0947 PF00989 PAS fold MS6_0949 PF00266 Aminotransferase class-V MS6_0952 PF18030 RimK PreATP-grasp domain MS6_0952 PF08443 RimK-like ATP-grasp domain MS6_0953 PF08003 Protein of unknown function (DUF1698) MS6_0954 PF13649 Methyltransferase domain MS6_0955 PF01904 Protein of unknown function DUF72 MS6_0956 PF01336 OB-fold nucleic acid binding domain MS6_0956 PF00152 tRNA synthetases class II (D, K and N) MS6_0956 PF02938 GAD domain MS6_0957 PF00265 Thymidine kinase MS6_0958 PF00375 Sodium:dicarboxylate symporter family MS6_0959 PF00290 Tryptophan synthase alpha chain MS6_0960 PF00291 Pyridoxal-phosphate dependent enzyme MS6_0961 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MS6_0961 PF00218 Indole-3-glycerol phosphate synthase MS6_0962 PF00591 Glycosyl transferase family, a/b domain MS6_0962 PF02885 Glycosyl transferase family, helical bundle domain MS6_0963 PF00117 Glutamine amidotransferase class-I MS6_0964 PF04715 Anthranilate synthase component I, N terminal region MS6_0964 PF00425 chorismate binding enzyme MS6_0965 PF08056 Tryptophan operon leader peptide MS6_0966 PF02811 PHP domain MS6_0967 PF01300 Telomere recombination MS6_0968 PF01479 S4 domain MS6_0968 PF00849 RNA pseudouridylate synthase MS6_0969 PF00664 ABC transporter transmembrane region MS6_0969 PF00005 ABC transporter MS6_0970 PF00005 ABC transporter MS6_0970 PF00664 ABC transporter transmembrane region MS6_0971 PF07992 Pyridine nucleotide-disulphide oxidoreductase MS6_0973 PF00266 Aminotransferase class-V MS6_0974 PF00990 Diguanylate cyclase, GGDEF domain MS6_0974 PF00072 Response regulator receiver domain MS6_0975 PF02698 DUF218 domain MS6_0977 PF03949 Malic enzyme, NAD binding domain MS6_0977 PF00390 Malic enzyme, N-terminal domain MS6_0979 PF01259 SAICAR synthetase MS6_0983 PF00691 OmpA family MS6_0983 PF13488 Glycine zipper MS6_0986 PF01565 FAD binding domain MS6_0986 PF02913 FAD linked oxidases, C-terminal domain MS6_0986 PF13183 4Fe-4S dicluster domain MS6_0987 PF04191 Phospholipid methyltransferase MS6_0988 PF00089 Trypsin MS6_0990 PF00221 Aromatic amino acid lyase MS6_0991 PF01175 Urocanase Rossmann-like domain MS6_0991 PF17392 Urocanase C-terminal domain MS6_0991 PF17391 Urocanase N-terminal domain MS6_0992 PF00491 Arginase family MS6_0993 PF01979 Amidohydrolase family MS6_0994 PF07702 UTRA domain MS6_0994 PF00392 Bacterial regulatory proteins, gntR family MS6_0996 PF04269 Protein of unknown function, DUF440 MS6_0997 PF01132 Elongation factor P (EF-P) OB domain MS6_0997 PF09285 Elongation factor P, C-terminal MS6_0997 PF08207 Elongation factor P (EF-P) KOW-like domain MS6_0999 PF00990 Diguanylate cyclase, GGDEF domain MS6_0999 PF00563 EAL domain MS6_0999 PF13426 PAS domain MS6_1000 PF00136 DNA polymerase family B MS6_1000 PF03104 DNA polymerase family B, exonuclease domain MS6_1001 PF00196 Bacterial regulatory proteins, luxR family MS6_1001 PF00072 Response regulator receiver domain MS6_1002 PF08459 UvrC Helix-hairpin-helix N-terminal MS6_1002 PF02151 UvrB/uvrC motif MS6_1002 PF01541 GIY-YIG catalytic domain MS6_1003 PF01066 CDP-alcohol phosphatidyltransferase MS6_1004 PF00072 Response regulator receiver domain MS6_1004 PF00990 Diguanylate cyclase, GGDEF domain MS6_1007 PF01409 tRNA synthetases class II core domain (F) MS6_1007 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MS6_1008 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MS6_1008 PF03483 B3/4 domain MS6_1008 PF01588 Putative tRNA binding domain MS6_1008 PF03484 tRNA synthetase B5 domain MS6_1008 PF03147 Ferredoxin-fold anticodon binding domain MS6_1009 PF00216 Bacterial DNA-binding protein MS6_1011 PF05724 Thiopurine S-methyltransferase (TPMT) MS6_1012 PF02222 ATP-grasp domain MS6_1014 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region MS6_1014 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MS6_1015 PF04172 LrgB-like family MS6_1016 PF03788 LrgA family MS6_1017 PF00929 Exonuclease MS6_1017 PF08411 Exonuclease C-terminal MS6_1019 PF01641 SelR domain MS6_1021 PF02277 Phosphoribosyltransferase MS6_1022 PF02654 Cobalamin-5-phosphate synthase MS6_1023 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase MS6_1025 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family MS6_1026 PF01032 FecCD transport family MS6_1027 PF00005 ABC transporter MS6_1030 PF17200 Single Cache domain 2 MS6_1030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1030 PF00672 HAMP domain MS6_1033 PF00994 Probable molybdopterin binding domain MS6_1035 PF00111 2Fe-2S iron-sulfur cluster binding domain MS6_1035 PF00970 Oxidoreductase FAD-binding domain MS6_1035 PF00175 Oxidoreductase NAD-binding domain MS6_1036 PF00268 Ribonucleotide reductase, small chain MS6_1037 PF02867 Ribonucleotide reductase, barrel domain MS6_1037 PF00317 Ribonucleotide reductase, all-alpha domain MS6_1037 PF03477 ATP cone domain MS6_1039 PF03989 DNA gyrase C-terminal domain, beta-propeller MS6_1039 PF00521 DNA gyrase/topoisomerase IV, subunit A MS6_1042 PF07690 Major Facilitator Superfamily MS6_1044 PF00925 GTP cyclohydrolase II MS6_1049 PF01471 Putative peptidoglycan binding domain MS6_1049 PF03734 L,D-transpeptidase catalytic domain MS6_1050 PF05951 Bacterial protein of unknown function (DUF882) MS6_1051 PF00753 Metallo-beta-lactamase superfamily MS6_1054 PF03480 Bacterial extracellular solute-binding protein, family 7 MS6_1056 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MS6_1057 PF17200 Single Cache domain 2 MS6_1057 PF07730 Histidine kinase MS6_1058 PF00072 Response regulator receiver domain MS6_1058 PF00196 Bacterial regulatory proteins, luxR family MS6_1059 PF01047 MarR family MS6_1060 PF02028 BCCT, betaine/carnitine/choline family transporter MS6_1061 PF01522 Polysaccharide deacetylase MS6_1062 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MS6_1063 PF02378 Phosphotransferase system, EIIC MS6_1064 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit MS6_1065 PF02056 Family 4 glycosyl hydrolase MS6_1065 PF11975 Family 4 glycosyl hydrolase C-terminal domain MS6_1066 PF04794 YdjC-like protein MS6_1067 PF00356 Bacterial regulatory proteins, lacI family MS6_1068 PF13506 Glycosyl transferase family 21 MS6_1069 PF04349 Periplasmic glucan biosynthesis protein, MdoG MS6_1070 PF00672 HAMP domain MS6_1070 PF17200 Single Cache domain 2 MS6_1070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1073 PF00155 Aminotransferase class I and II MS6_1075 PF01966 HD domain MS6_1075 PF00672 HAMP domain MS6_1076 PF08543 Phosphomethylpyrimidine kinase MS6_1077 PF00152 tRNA synthetases class II (D, K and N) MS6_1077 PF01336 OB-fold nucleic acid binding domain MS6_1078 PF00672 HAMP domain MS6_1078 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1079 PF01242 6-pyruvoyl tetrahydropterin synthase MS6_1080 PF03313 Serine dehydratase alpha chain MS6_1080 PF03315 Serine dehydratase beta chain MS6_1081 PF03222 Tryptophan/tyrosine permease family MS6_1082 PF00293 NUDIX domain MS6_1083 PF00425 chorismate binding enzyme MS6_1083 PF04715 Anthranilate synthase component I, N terminal region MS6_1086 PF04317 YcjX-like family, DUF463 MS6_1087 PF05128 Domain of unknown function (DUF697) MS6_1088 PF18024 Helix-turn-helix domain MS6_1088 PF00158 Sigma-54 interaction domain MS6_1089 PF13302 Acetyltransferase (GNAT) domain MS6_1091 PF00892 EamA-like transporter family MS6_1092 PF00842 Alanine racemase, C-terminal domain MS6_1092 PF01168 Alanine racemase, N-terminal domain MS6_1093 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1093 PF00672 HAMP domain MS6_1094 PF00939 Sodium:sulfate symporter transmembrane region MS6_1095 PF00497 Bacterial extracellular solute-binding proteins, family 3 MS6_1095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_1095 PF00512 His Kinase A (phospho-acceptor) domain MS6_1096 PF02954 Bacterial regulatory protein, Fis family MS6_1096 PF00072 Response regulator receiver domain MS6_1096 PF00158 Sigma-54 interaction domain MS6_1097 PF04393 Protein of unknown function (DUF535) MS6_1098 PF06629 MltA-interacting protein MipA MS6_1099 PF00672 HAMP domain MS6_1099 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_1099 PF00512 His Kinase A (phospho-acceptor) domain MS6_1100 PF00486 Transcriptional regulatory protein, C terminal MS6_1100 PF00072 Response regulator receiver domain MS6_1104 PF13407 Periplasmic binding protein domain MS6_1106 PF00005 ABC transporter MS6_1107 PF02653 Branched-chain amino acid transport system / permease component MS6_1110 PF01970 Tripartite tricarboxylate transporter TctA family MS6_1113 PF07729 FCD domain MS6_1113 PF00392 Bacterial regulatory proteins, gntR family MS6_1115 PF00285 Citrate synthase, C-terminal domain MS6_1116 PF00330 Aconitase family (aconitate hydratase) MS6_1116 PF00694 Aconitase C-terminal domain MS6_1117 PF04303 PrpF protein MS6_1118 PF16177 Acetyl-coenzyme A synthetase N-terminus MS6_1118 PF13193 AMP-binding enzyme C-terminal domain MS6_1118 PF00501 AMP-binding enzyme MS6_1121 PF07687 Peptidase dimerisation domain MS6_1121 PF01546 Peptidase family M20/M25/M40 MS6_1122 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MS6_1123 PF04209 homogentisate 1,2-dioxygenase MS6_1125 PF02798 Glutathione S-transferase, N-terminal domain MS6_1125 PF14497 Glutathione S-transferase, C-terminal domain MS6_1126 PF00072 Response regulator receiver domain MS6_1127 PF00672 HAMP domain MS6_1127 PF00072 Response regulator receiver domain MS6_1127 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_1127 PF01627 Hpt domain MS6_1127 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MS6_1127 PF00512 His Kinase A (phospho-acceptor) domain MS6_1128 PF08534 Redoxin MS6_1128 PF00462 Glutaredoxin MS6_1129 PF00990 Diguanylate cyclase, GGDEF domain MS6_1130 PF10672 S-adenosylmethionine-dependent methyltransferase MS6_1130 PF17785 PUA-like domain MS6_1131 PF00708 Acylphosphatase MS6_1132 PF04358 DsrC like protein MS6_1133 PF01027 Inhibitor of apoptosis-promoting Bax1 MS6_1134 PF00005 ABC transporter MS6_1135 PF00528 Binding-protein-dependent transport system inner membrane component MS6_1136 PF00528 Binding-protein-dependent transport system inner membrane component MS6_1137 PF00497 Bacterial extracellular solute-binding proteins, family 3 MS6_1138 PF14824 Sirohaem biosynthesis protein central MS6_1138 PF10414 Sirohaem synthase dimerisation region MS6_1138 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MS6_1140 PF04055 Radical SAM superfamily MS6_1141 PF06508 Queuosine biosynthesis protein QueC MS6_1145 PF00563 EAL domain MS6_1145 PF03707 Bacterial signalling protein N terminal repeat MS6_1145 PF00990 Diguanylate cyclase, GGDEF domain MS6_1147 PF17158 Membrane-associated sensor, integral membrane domain MS6_1147 PF00990 Diguanylate cyclase, GGDEF domain MS6_1148 PF00012 Hsp70 protein MS6_1149 PF00012 Hsp70 protein MS6_1151 PF03707 Bacterial signalling protein N terminal repeat MS6_1151 PF00563 EAL domain MS6_1151 PF00990 Diguanylate cyclase, GGDEF domain MS6_1157 PF00270 DEAD/DEAH box helicase MS6_1157 PF11898 Domain of unknown function (DUF3418) MS6_1157 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MS6_1157 PF00271 Helicase conserved C-terminal domain MS6_1157 PF04408 Helicase associated domain (HA2) MS6_1159 PF00012 Hsp70 protein MS6_1160 PF10437 Bacterial lipoate protein ligase C-terminus MS6_1160 PF03099 Biotin/lipoate A/B protein ligase family MS6_1162 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_1162 PF03466 LysR substrate binding domain MS6_1163 PF07690 Major Facilitator Superfamily MS6_1164 PF00875 DNA photolyase MS6_1164 PF03441 FAD binding domain of DNA photolyase MS6_1165 PF00893 Small Multidrug Resistance protein MS6_1166 PF00672 HAMP domain MS6_1166 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1169 PF07194 P2 response regulator binding domain MS6_1169 PF01584 CheW-like domain MS6_1169 PF02895 Signal transducing histidine kinase, homodimeric domain MS6_1169 PF01627 Hpt domain MS6_1169 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_1170 PF01627 Hpt domain MS6_1170 PF01584 CheW-like domain MS6_1170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_1170 PF00072 Response regulator receiver domain MS6_1171 PF01739 CheR methyltransferase, SAM binding domain MS6_1171 PF03705 CheR methyltransferase, all-alpha domain MS6_1173 PF00072 Response regulator receiver domain MS6_1173 PF01339 CheB methylesterase MS6_1174 PF01584 CheW-like domain MS6_1175 PF00672 HAMP domain MS6_1175 PF17202 Single cache domain 3 MS6_1175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1177 PF00672 HAMP domain MS6_1177 PF12729 Four helix bundle sensory module for signal transduction MS6_1177 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1178 PF08447 PAS fold MS6_1178 PF13426 PAS domain MS6_1178 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1179 PF00270 DEAD/DEAH box helicase MS6_1179 PF00271 Helicase conserved C-terminal domain MS6_1181 PF02321 Outer membrane efflux protein MS6_1182 PF00529 HlyD membrane-fusion protein of T1SS MS6_1182 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MS6_1183 PF07690 Major Facilitator Superfamily MS6_1184 PF02743 Cache domain MS6_1184 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1184 PF00672 HAMP domain MS6_1185 PF02074 Carboxypeptidase Taq (M32) metallopeptidase MS6_1186 PF05638 Type VI secretion system effector, Hcp MS6_1187 PF16671 Actin cross-linking domain MS6_1187 PF04717 Type VI secretion system, phage-baseplate injector MS6_1192 PF01810 LysE type translocator MS6_1193 PF01235 Sodium:alanine symporter family MS6_1196 PF13416 Bacterial extracellular solute-binding protein MS6_1197 PF13416 Bacterial extracellular solute-binding protein MS6_1198 PF00528 Binding-protein-dependent transport system inner membrane component MS6_1199 PF00528 Binding-protein-dependent transport system inner membrane component MS6_1200 PF08402 TOBE domain MS6_1200 PF00005 ABC transporter MS6_1204 PF01171 PP-loop family MS6_1205 PF00582 Universal stress protein family MS6_1206 PF00027 Cyclic nucleotide-binding domain MS6_1206 PF13545 Crp-like helix-turn-helix domain MS6_1209 PF00403 Heavy-metal-associated domain MS6_1211 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MS6_1211 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP MS6_1214 PF00115 Cytochrome C and Quinol oxidase polypeptide I MS6_1216 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_1216 PF00072 Response regulator receiver domain MS6_1216 PF00512 His Kinase A (phospho-acceptor) domain MS6_1216 PF09308 LuxQ, periplasmic MS6_1217 PF03412 Peptidase C39 family MS6_1217 PF00005 ABC transporter MS6_1217 PF00664 ABC transporter transmembrane region MS6_1219 PF03412 Peptidase C39 family MS6_1219 PF00664 ABC transporter transmembrane region MS6_1219 PF00005 ABC transporter MS6_1221 PF02794 RTX toxin acyltransferase family MS6_1222 PF11713 Peptidase C80 family MS6_1222 PF07634 RtxA repeat MS6_1222 PF11647 Membrane Localization Domain MS6_1222 PF12146 Serine aminopeptidase, S33 MS6_1222 PF16671 Actin cross-linking domain MS6_1230 PF01376 Heat-labile enterotoxin beta chain MS6_1231 PF01375 Heat-labile enterotoxin alpha chain MS6_1232 PF05707 Zonular occludens toxin (Zot) MS6_1233 PF10734 Protein of unknown function (DUF2523) MS6_1234 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII MS6_1239 PF01381 Helix-turn-helix MS6_1241 PF01376 Heat-labile enterotoxin beta chain MS6_1242 PF01375 Heat-labile enterotoxin alpha chain MS6_1243 PF05707 Zonular occludens toxin (Zot) MS6_1244 PF10734 Protein of unknown function (DUF2523) MS6_1245 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII MS6_1250 PF01381 Helix-turn-helix MS6_1264 PF01527 Transposase MS6_1265 PF00665 Integrase core domain MS6_1268 PF17414 MatP C-terminal ribbon-helix-helix domain MS6_1268 PF06303 MatP N-terminal domain MS6_1269 PF05362 Lon protease (S16) C-terminal proteolytic domain MS6_1269 PF13654 AAA domain MS6_1270 PF07977 FabA-like domain MS6_1274 PF02926 THUMP domain MS6_1274 PF01170 Putative RNA methylase family UPF0020 MS6_1274 PF10672 S-adenosylmethionine-dependent methyltransferase MS6_1276 PF07126 Cell-division protein ZapC MS6_1277 PF01180 Dihydroorotate dehydrogenase MS6_1278 PF05088 Bacterial NAD-glutamate dehydrogenase MS6_1280 PF11940 Domain of unknown function (DUF3458) Ig-like fold MS6_1280 PF17432 Domain of unknown function (DUF3458_C) ARM repeats MS6_1280 PF01433 Peptidase family M1 domain MS6_1282 PF17804 Tail specific protease N-terminal domain MS6_1282 PF00595 PDZ domain MS6_1282 PF11818 C-terminal domain of tail specific protease (DUF3340) MS6_1282 PF03572 Peptidase family S41 MS6_1283 PF17516 ProQ C-terminal domain MS6_1283 PF04352 ProQ/FINO family MS6_1284 PF13185 GAF domain MS6_1285 PF00664 ABC transporter transmembrane region MS6_1285 PF00005 ABC transporter MS6_1286 PF04403 Paraquat-inducible protein A MS6_1287 PF02470 MlaD protein MS6_1288 PF01189 16S rRNA methyltransferase RsmB/F MS6_1288 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF MS6_1288 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF MS6_1289 PF13509 S1 domain MS6_1289 PF17783 CvfB-like winged helix domain MS6_1292 PF00793 DAHP synthetase I family MS6_1293 PF04461 Protein of unknown function (DUF520) MS6_1294 PF02146 Sir2 family MS6_1297 PF13247 4Fe-4S dicluster domain MS6_1298 PF00384 Molybdopterin oxidoreductase MS6_1298 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MS6_1298 PF01568 Molydopterin dinucleotide binding domain MS6_1300 PF02613 Nitrate reductase delta subunit MS6_1304 PF02634 FdhD/NarQ family MS6_1305 PF00005 ABC transporter MS6_1305 PF12848 ABC transporter MS6_1306 PF00989 PAS fold MS6_1306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_1306 PF00512 His Kinase A (phospho-acceptor) domain MS6_1307 PF02954 Bacterial regulatory protein, Fis family MS6_1307 PF00158 Sigma-54 interaction domain MS6_1307 PF00072 Response regulator receiver domain MS6_1308 PF12849 PBP superfamily domain MS6_1309 PF00528 Binding-protein-dependent transport system inner membrane component MS6_1310 PF00005 ABC transporter MS6_1310 PF08402 TOBE domain MS6_1311 PF12804 MobA-like NTP transferase domain MS6_1312 PF00994 Probable molybdopterin binding domain MS6_1312 PF03454 MoeA C-terminal region (domain IV) MS6_1312 PF03453 MoeA N-terminal region (domain I and II) MS6_1317 PF00480 ROK family MS6_1320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1320 PF00672 HAMP domain MS6_1320 PF02743 Cache domain MS6_1321 PF00877 NlpC/P60 family MS6_1325 PF01554 MatE MS6_1327 PF14743 DNA ligase OB-like domain MS6_1327 PF01068 ATP dependent DNA ligase domain MS6_1329 PF03544 Gram-negative bacterial TonB protein C-terminal MS6_1330 PF02472 Biopolymer transport protein ExbD/TolR MS6_1331 PF01618 MotA/TolQ/ExbB proton channel family MS6_1332 PF01618 MotA/TolQ/ExbB proton channel family MS6_1334 PF13416 Bacterial extracellular solute-binding protein MS6_1335 PF00528 Binding-protein-dependent transport system inner membrane component MS6_1336 PF00528 Binding-protein-dependent transport system inner membrane component MS6_1337 PF17912 MalK OB fold domain MS6_1337 PF00005 ABC transporter MS6_1338 PF08220 DeoR-like helix-turn-helix domain MS6_1338 PF00455 DeoR C terminal sensor domain MS6_1339 PF03009 Glycerophosphoryl diester phosphodiesterase family MS6_1340 PF04074 YhcH/YjgK/YiaL MS6_1341 PF01042 Endoribonuclease L-PSP MS6_1343 PF00356 Bacterial regulatory proteins, lacI family MS6_1344 PF00232 Glycosyl hydrolase family 1 MS6_1345 PF00141 Peroxidase MS6_1346 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_1346 PF03466 LysR substrate binding domain MS6_1348 PF00529 HlyD membrane-fusion protein of T1SS MS6_1350 PF12704 MacB-like periplasmic core domain MS6_1350 PF00005 ABC transporter MS6_1350 PF02687 FtsX-like permease family MS6_1351 PF02687 FtsX-like permease family MS6_1351 PF12704 MacB-like periplasmic core domain MS6_1351 PF00005 ABC transporter MS6_1352 PF00005 ABC transporter MS6_1352 PF02687 FtsX-like permease family MS6_1352 PF12704 MacB-like periplasmic core domain MS6_1353 PF02322 Cytochrome bd terminal oxidase subunit II MS6_1354 PF01654 Cytochrome bd terminal oxidase subunit I MS6_1356 PF10415 Fumarase C C-terminus MS6_1356 PF00206 Lyase MS6_1362 PF13193 AMP-binding enzyme C-terminal domain MS6_1362 PF00501 AMP-binding enzyme MS6_1363 PF03466 LysR substrate binding domain MS6_1363 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_1364 PF00361 Proton-conducting membrane transporter MS6_1364 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MS6_1365 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) MS6_1366 PF00080 Copper/zinc superoxide dismutase (SODC) MS6_1368 PF00199 Catalase MS6_1368 PF06628 Catalase-related immune-responsive MS6_1370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_1370 PF03466 LysR substrate binding domain MS6_1371 PF03306 Alpha-acetolactate decarboxylase MS6_1372 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MS6_1372 PF00205 Thiamine pyrophosphate enzyme, central domain MS6_1372 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MS6_1374 PF00563 EAL domain MS6_1374 PF17154 Gammaproteobacterial periplasmic sensor domain MS6_1374 PF00990 Diguanylate cyclase, GGDEF domain MS6_1374 PF00672 HAMP domain MS6_1375 PF00990 Diguanylate cyclase, GGDEF domain MS6_1376 PF01263 Aldose 1-epimerase MS6_1377 PF00288 GHMP kinases N terminal domain MS6_1377 PF08544 GHMP kinases C terminal MS6_1377 PF10509 Galactokinase galactose-binding signature MS6_1378 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain MS6_1378 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain MS6_1379 PF07690 Major Facilitator Superfamily MS6_1381 PF00990 Diguanylate cyclase, GGDEF domain MS6_1381 PF00072 Response regulator receiver domain MS6_1384 PF01584 CheW-like domain MS6_1384 PF00072 Response regulator receiver domain MS6_1386 PF00072 Response regulator receiver domain MS6_1386 PF12431 Transcriptional regulator MS6_1387 PF00989 PAS fold MS6_1387 PF17203 Single cache domain 3 MS6_1387 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_1387 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain MS6_1389 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MS6_1393 PF04204 Homoserine O-succinyltransferase MS6_1396 PF05971 RNA methyltransferase MS6_1397 PF01863 Protein of unknown function DUF45 MS6_1399 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_1399 PF03466 LysR substrate binding domain MS6_1403 PF02321 Outer membrane efflux protein MS6_1404 PF05736 OprF membrane domain MS6_1404 PF00691 OmpA family MS6_1406 PF03435 Saccharopine dehydrogenase NADP binding domain MS6_1406 PF16653 Saccharopine dehydrogenase C-terminal domain MS6_1407 PF00202 Aminotransferase class-III MS6_1408 PF06965 Na+/H+ antiporter 1 MS6_1411 PF00005 ABC transporter MS6_1412 PF01554 MatE MS6_1413 PF13460 NAD(P)H-binding MS6_1413 PF11066 Protein of unknown function (DUF2867) MS6_1415 PF07690 Major Facilitator Superfamily MS6_1416 PF01479 S4 domain MS6_1416 PF00849 RNA pseudouridylate synthase MS6_1417 PF04851 Type III restriction enzyme, res subunit MS6_1417 PF00271 Helicase conserved C-terminal domain MS6_1419 PF00486 Transcriptional regulatory protein, C terminal MS6_1419 PF00072 Response regulator receiver domain MS6_1421 PF01386 Ribosomal L25p family MS6_1422 PF00360 Phytochrome region MS6_1422 PF00990 Diguanylate cyclase, GGDEF domain MS6_1422 PF01590 GAF domain MS6_1422 PF00563 EAL domain MS6_1424 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1424 PF12729 Four helix bundle sensory module for signal transduction MS6_1424 PF00672 HAMP domain MS6_1428 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MS6_1428 PF12793 Sugar transport-related sRNA regulator N-term MS6_1430 PF01752 Collagenase MS6_1430 PF04151 Bacterial pre-peptidase C-terminal domain MS6_1430 PF08453 Peptidase family M9 N-terminal MS6_1432 PF03707 Bacterial signalling protein N terminal repeat MS6_1432 PF00990 Diguanylate cyclase, GGDEF domain MS6_1432 PF00563 EAL domain MS6_1433 PF09308 LuxQ, periplasmic MS6_1433 PF00072 Response regulator receiver domain MS6_1433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_1433 PF00512 His Kinase A (phospho-acceptor) domain MS6_1434 PF01769 Divalent cation transporter MS6_1434 PF00571 CBS domain MS6_1434 PF03448 MgtE intracellular N domain MS6_1437 PF03222 Tryptophan/tyrosine permease family MS6_1438 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MS6_1439 PF00005 ABC transporter MS6_1442 PF06945 Protein of unknown function (DUF1289) MS6_1444 PF13416 Bacterial extracellular solute-binding protein MS6_1445 PF00528 Binding-protein-dependent transport system inner membrane component MS6_1446 PF00005 ABC transporter MS6_1447 PF01066 CDP-alcohol phosphatidyltransferase MS6_1448 PF00849 RNA pseudouridylate synthase MS6_1450 PF00209 Sodium:neurotransmitter symporter family MS6_1451 PF13396 Phospholipase_D-nuclease N-terminal MS6_1451 PF13091 PLD-like domain MS6_1452 PF01053 Cys/Met metabolism PLP-dependent enzyme MS6_1453 PF03352 Methyladenine glycosylase MS6_1454 PF00873 AcrB/AcrD/AcrF family MS6_1455 PF13533 Biotin-lipoyl like MS6_1456 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MS6_1456 PF00529 HlyD membrane-fusion protein of T1SS MS6_1459 PF04012 PspA/IM30 family MS6_1460 PF00158 Sigma-54 interaction domain MS6_1460 PF02954 Bacterial regulatory protein, Fis family MS6_1461 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MS6_1462 PF00528 Binding-protein-dependent transport system inner membrane component MS6_1463 PF00528 Binding-protein-dependent transport system inner membrane component MS6_1463 PF12911 N-terminal TM domain of oligopeptide transport permease C MS6_1464 PF00005 ABC transporter MS6_1464 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MS6_1465 PF00005 ABC transporter MS6_1468 PF02833 DHHA2 domain MS6_1468 PF01368 DHH family MS6_1471 PF18364 Molybdopterin oxidoreductase N-terminal domain MS6_1471 PF00384 Molybdopterin oxidoreductase MS6_1471 PF01568 Molydopterin dinucleotide binding domain MS6_1472 PF03264 NapC/NirT cytochrome c family, N-terminal region MS6_1473 PF06796 Periplasmic nitrate reductase protein NapE MS6_1475 PF01226 Formate/nitrite transporter MS6_1477 PF01370 NAD dependent epimerase/dehydratase family MS6_1478 PF02698 DUF218 domain MS6_1480 PF04279 Intracellular septation protein A MS6_1481 PF03061 Thioesterase superfamily MS6_1482 PF03795 YCII-related domain MS6_1484 PF08267 Cobalamin-independent synthase, N-terminal domain MS6_1484 PF01717 Cobalamin-independent synthase, Catalytic domain MS6_1485 PF03466 LysR substrate binding domain MS6_1485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_1488 PF00675 Insulinase (Peptidase family M16) MS6_1488 PF05193 Peptidase M16 inactive domain MS6_1489 PF00563 EAL domain MS6_1489 PF00990 Diguanylate cyclase, GGDEF domain MS6_1489 PF08448 PAS fold MS6_1489 PF08447 PAS fold MS6_1490 PF11842 Domain of unknown function (DUF3362) MS6_1490 PF08497 Radical SAM N-terminal MS6_1490 PF04055 Radical SAM superfamily MS6_1491 PF01810 LysE type translocator MS6_1492 PF01037 Lrp/AsnC ligand binding domain MS6_1493 PF16330 MukB hinge domain MS6_1493 PF04310 MukB N-terminal MS6_1494 PF04288 MukE-like family MS6_1495 PF17193 MukF C-terminal domain MS6_1495 PF03882 MukF winged-helix domain MS6_1495 PF17192 MukF middle domain MS6_1497 PF02698 DUF218 domain MS6_1498 PF00072 Response regulator receiver domain MS6_1498 PF00486 Transcriptional regulatory protein, C terminal MS6_1499 PF02613 Nitrate reductase delta subunit MS6_1500 PF00356 Bacterial regulatory proteins, lacI family MS6_1501 PF04993 TfoX N-terminal domain MS6_1501 PF04994 TfoX C-terminal domain MS6_1505 PF08323 Starch synthase catalytic domain MS6_1505 PF00534 Glycosyl transferases group 1 MS6_1506 PF00483 Nucleotidyl transferase MS6_1508 PF01751 Toprim domain MS6_1508 PF01396 Topoisomerase DNA binding C4 zinc finger MS6_1508 PF08272 Topoisomerase I zinc-ribbon-like MS6_1508 PF01131 DNA topoisomerase MS6_1509 PF10692 Protein of unknown function (DUF2498) MS6_1510 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MS6_1512 PF03588 Leucyl/phenylalanyl-tRNA protein transferase MS6_1513 PF04377 Arginine-tRNA-protein transferase, C terminus MS6_1513 PF04376 Arginine-tRNA-protein transferase, N terminus MS6_1514 PF01176 Translation initiation factor 1A / IF-1 MS6_1515 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase MS6_1515 PF12241 Trans-2-enoyl-CoA reductase catalytic region MS6_1515 PF07055 Enoyl reductase FAD binding domain MS6_1516 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MS6_1516 PF09317 Domain of unknown function (DUF1974) MS6_1516 PF02770 Acyl-CoA dehydrogenase, middle domain MS6_1516 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MS6_1517 PF16295 Tetracyclin repressor-like, C-terminal domain MS6_1517 PF00440 Bacterial regulatory proteins, tetR family MS6_1520 PF07383 Protein of unknown function (DUF1496) MS6_1521 PF00171 Aldehyde dehydrogenase family MS6_1522 PF08362 YcdC-like protein, C-terminal region MS6_1522 PF00440 Bacterial regulatory proteins, tetR family MS6_1526 PF00924 Mechanosensitive ion channel MS6_1526 PF05552 Conserved TM helix MS6_1527 PF04403 Paraquat-inducible protein A MS6_1528 PF02470 MlaD protein MS6_1530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MS6_1531 PF00873 AcrB/AcrD/AcrF family MS6_1532 PF13356 Arm DNA-binding domain MS6_1532 PF00589 Phage integrase family MS6_1533 PF13356 Arm DNA-binding domain MS6_1533 PF00589 Phage integrase family MS6_1534 PF00176 SNF2 family N-terminal domain MS6_1534 PF12419 SNF2 Helicase protein MS6_1534 PF00271 Helicase conserved C-terminal domain MS6_1538 PF18766 SWI2/SNF2 ATPase MS6_1538 PF11867 Domain of unknown function (DUF3387) MS6_1538 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) MS6_1542 PF02384 N-6 DNA Methylase MS6_1546 PF07646 Kelch motif MS6_1547 PF01344 Kelch motif MS6_1548 PF01418 Helix-turn-helix domain, rpiR family MS6_1548 PF01380 SIS domain MS6_1549 PF00701 Dihydrodipicolinate synthetase family MS6_1550 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MS6_1551 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MS6_1552 PF03480 Bacterial extracellular solute-binding protein, family 7 MS6_1553 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase MS6_1554 PF00480 ROK family MS6_1555 PF01979 Amidohydrolase family MS6_1556 PF13088 BNR repeat-like domain MS6_1556 PF09264 Vibrio cholerae sialidase, lectin insertion MS6_1558 PF04002 RadC-like JAB domain MS6_1561 PF00665 Integrase core domain MS6_1562 PF01527 Transposase MS6_1569 PF00005 ABC transporter MS6_1582 PF00875 DNA photolyase MS6_1582 PF03441 FAD binding domain of DNA photolyase MS6_1584 PF09905 DNA-binding protein VF530 MS6_1585 PF02954 Bacterial regulatory protein, Fis family MS6_1585 PF01590 GAF domain MS6_1585 PF00158 Sigma-54 interaction domain MS6_1586 PF00171 Aldehyde dehydrogenase family MS6_1590 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MS6_1592 PF12833 Helix-turn-helix domain MS6_1593 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MS6_1593 PF02378 Phosphotransferase system, EIIC MS6_1593 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MS6_1594 PF01238 Phosphomannose isomerase type I MS6_1595 PF06610 L-alanine exporter MS6_1596 PF00512 His Kinase A (phospho-acceptor) domain MS6_1596 PF09308 LuxQ, periplasmic MS6_1596 PF00072 Response regulator receiver domain MS6_1596 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_1598 PF02445 Quinolinate synthetase A protein MS6_1600 PF00691 OmpA family MS6_1601 PF07676 WD40-like Beta Propeller Repeat MS6_1601 PF04052 TolB amino-terminal domain MS6_1603 PF02472 Biopolymer transport protein ExbD/TolR MS6_1604 PF01618 MotA/TolQ/ExbB proton channel family MS6_1605 PF03061 Thioesterase superfamily MS6_1606 PF02322 Cytochrome bd terminal oxidase subunit II MS6_1607 PF01654 Cytochrome bd terminal oxidase subunit I MS6_1608 PF05496 Holliday junction DNA helicase RuvB P-loop domain MS6_1608 PF05491 RuvB C-terminal winged helix domain MS6_1608 PF17864 RuvB AAA lid domain MS6_1609 PF01330 RuvA N terminal domain MS6_1609 PF07499 RuvA, C-terminal domain MS6_1610 PF02075 Crossover junction endodeoxyribonuclease RuvC MS6_1611 PF09190 DALR domain MS6_1611 PF01406 tRNA synthetases class I (C) catalytic domain MS6_1612 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MS6_1613 PF00149 Calcineurin-like phosphoesterase MS6_1614 PF08668 HDOD domain MS6_1614 PF00563 EAL domain MS6_1615 PF02810 SEC-C motif MS6_1616 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) MS6_1617 PF13609 Gram-negative porin MS6_1618 PF13307 Helicase C-terminal domain MS6_1618 PF06733 DEAD_2 MS6_1619 PF01925 Sulfite exporter TauE/SafE MS6_1620 PF07445 Primosomal replication protein priC MS6_1621 PF10689 Protein of unknown function (DUF2496) MS6_1622 PF00672 HAMP domain MS6_1622 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1623 PF03372 Endonuclease/Exonuclease/phosphatase family MS6_1624 PF00528 Binding-protein-dependent transport system inner membrane component MS6_1625 PF00528 Binding-protein-dependent transport system inner membrane component MS6_1626 PF00497 Bacterial extracellular solute-binding proteins, family 3 MS6_1627 PF00005 ABC transporter MS6_1629 PF02901 Pyruvate formate lyase-like MS6_1629 PF01228 Glycine radical MS6_1631 PF12729 Four helix bundle sensory module for signal transduction MS6_1631 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1631 PF00672 HAMP domain MS6_1632 PF04055 Radical SAM superfamily MS6_1634 PF03887 YfbU domain MS6_1635 PF06798 PrkA serine protein kinase C-terminal domain MS6_1635 PF08298 PrkA AAA domain MS6_1636 PF04285 Protein of unknown function (DUF444) MS6_1637 PF04293 SpoVR like protein MS6_1638 PF02348 Cytidylyltransferase MS6_1639 PF03966 Trm112p-like protein MS6_1640 PF02606 Tetraacyldisaccharide-1-P 4'-kinase MS6_1641 PF00005 ABC transporter MS6_1641 PF00664 ABC transporter transmembrane region MS6_1642 PF13567 Domain of unknown function (DUF4131) MS6_1642 PF00753 Metallo-beta-lactamase superfamily MS6_1642 PF03772 Competence protein MS6_1644 PF02687 FtsX-like permease family MS6_1644 PF12704 MacB-like periplasmic core domain MS6_1645 PF00005 ABC transporter MS6_1646 PF12704 MacB-like periplasmic core domain MS6_1646 PF02687 FtsX-like permease family MS6_1648 PF17757 UvrB interaction domain MS6_1648 PF03461 TRCF domain MS6_1648 PF00271 Helicase conserved C-terminal domain MS6_1648 PF00270 DEAD/DEAH box helicase MS6_1648 PF02559 CarD-like/TRCF domain MS6_1650 PF07968 Leukocidin/Hemolysin toxin family MS6_1650 PF12563 Hemolytic toxin N terminal MS6_1650 PF16458 Beta-prism lectin MS6_1652 PF07992 Pyridine nucleotide-disulphide oxidoreductase MS6_1654 PF05728 Uncharacterised protein family (UPF0227) MS6_1656 PF08139 Prokaryotic membrane lipoprotein lipid attachment site MS6_1656 PF13036 Peptidoglycan-synthase activator LpoB MS6_1659 PF01230 HIT domain MS6_1660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1660 PF00672 HAMP domain MS6_1662 PF07840 FadR C-terminal domain MS6_1662 PF00392 Bacterial regulatory proteins, gntR family MS6_1663 PF06450 Bacterial Na+/H+ antiporter B (NhaB) MS6_1664 PF02600 Disulfide bond formation protein DsbB MS6_1665 PF17854 FtsK alpha domain MS6_1665 PF01580 FtsK/SpoIIIE family MS6_1665 PF09397 Ftsk gamma domain MS6_1665 PF13491 4TM region of DNA translocase FtsK/SpoIIIE MS6_1666 PF01037 Lrp/AsnC ligand binding domain MS6_1667 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MS6_1667 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MS6_1669 PF03466 LysR substrate binding domain MS6_1669 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_1672 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) MS6_1673 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MS6_1674 PF18073 Rubredoxin metal binding domain MS6_1675 PF06305 Lipopolysaccharide assembly protein A domain MS6_1676 PF00216 Bacterial DNA-binding protein MS6_1677 PF00575 S1 RNA binding domain MS6_1678 PF02224 Cytidylate kinase MS6_1680 PF13145 PPIC-type PPIASE domain MS6_1681 PF00216 Bacterial DNA-binding protein MS6_1682 PF02190 ATP-dependent protease La (LON) substrate-binding domain MS6_1682 PF05362 Lon protease (S16) C-terminal proteolytic domain MS6_1682 PF00004 ATPase family associated with various cellular activities (AAA) MS6_1683 PF06689 ClpX C4-type zinc finger MS6_1683 PF07724 AAA domain (Cdc48 subfamily) MS6_1683 PF10431 C-terminal, D2-small domain, of ClpB protein MS6_1684 PF00574 Clp protease MS6_1685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MS6_1685 PF05698 Bacterial trigger factor protein (TF) C-terminus MS6_1685 PF05697 Bacterial trigger factor protein (TF) MS6_1687 PF02743 Cache domain MS6_1687 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_1687 PF00512 His Kinase A (phospho-acceptor) domain MS6_1688 PF00158 Sigma-54 interaction domain MS6_1688 PF02954 Bacterial regulatory protein, Fis family MS6_1688 PF00072 Response regulator receiver domain MS6_1689 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MS6_1690 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MS6_1691 PF03480 Bacterial extracellular solute-binding protein, family 7 MS6_1692 PF02696 Uncharacterized ACR, YdiU/UPF0061 family MS6_1695 PF13188 PAS domain MS6_1695 PF03707 Bacterial signalling protein N terminal repeat MS6_1695 PF00990 Diguanylate cyclase, GGDEF domain MS6_1695 PF00563 EAL domain MS6_1703 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MS6_1703 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MS6_1705 PF02668 Taurine catabolism dioxygenase TauD, TfdA family MS6_1706 PF01494 FAD binding domain MS6_1707 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_1707 PF03466 LysR substrate binding domain MS6_1709 PF01568 Molydopterin dinucleotide binding domain MS6_1709 PF18364 Molybdopterin oxidoreductase N-terminal domain MS6_1709 PF00384 Molybdopterin oxidoreductase MS6_1710 PF03264 NapC/NirT cytochrome c family, N-terminal region MS6_1711 PF00704 Glycosyl hydrolases family 18 MS6_1712 PF07662 Na+ dependent nucleoside transporter C-terminus MS6_1712 PF01773 Na+ dependent nucleoside transporter N-terminus MS6_1712 PF07670 Nucleoside recognition MS6_1713 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_1713 PF03466 LysR substrate binding domain MS6_1714 PF13406 Transglycosylase SLT domain MS6_1715 PF05166 YcgL domain MS6_1716 PF03775 Septum formation inhibitor MinC, C-terminal domain MS6_1716 PF05209 Septum formation inhibitor MinC, N-terminal domain MS6_1717 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MS6_1718 PF03776 Septum formation topological specificity factor MinE MS6_1719 PF04170 NlpE N-terminal domain MS6_1723 PF07690 Major Facilitator Superfamily MS6_1725 PF12729 Four helix bundle sensory module for signal transduction MS6_1725 PF00672 HAMP domain MS6_1725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1726 PF01381 Helix-turn-helix MS6_1726 PF07883 Cupin domain MS6_1727 PF03594 Benzoate membrane transport protein MS6_1728 PF00501 AMP-binding enzyme MS6_1728 PF13193 AMP-binding enzyme C-terminal domain MS6_1729 PF13378 Enolase C-terminal domain-like MS6_1730 PF00378 Enoyl-CoA hydratase/isomerase MS6_1731 PF12697 Alpha/beta hydrolase family MS6_1732 PF16582 Middle domain of thiamine pyrophosphate MS6_1732 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MS6_1732 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MS6_1733 PF00425 chorismate binding enzyme MS6_1734 PF00155 Aminotransferase class I and II MS6_1736 PF13286 Phosphohydrolase-associated domain MS6_1736 PF01966 HD domain MS6_1740 PF01612 3'-5' exonuclease MS6_1740 PF00570 HRDC domain MS6_1741 PF00501 AMP-binding enzyme MS6_1741 PF13193 AMP-binding enzyme C-terminal domain MS6_1742 PF00561 alpha/beta hydrolase fold MS6_1745 PF00814 Glycoprotease family MS6_1746 PF04851 Type III restriction enzyme, res subunit MS6_1746 PF13307 Helicase C-terminal domain MS6_1748 PF01842 ACT domain MS6_1748 PF00551 Formyl transferase MS6_1749 PF07992 Pyridine nucleotide-disulphide oxidoreductase MS6_1749 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MS6_1750 PF01343 Peptidase family S49 MS6_1751 PF00710 Asparaginase, N-terminal MS6_1751 PF17763 Glutaminase/Asparaginase C-terminal domain MS6_1753 PF07023 Protein of unknown function (DUF1315) MS6_1756 PF01641 SelR domain MS6_1757 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MS6_1757 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MS6_1758 PF01263 Aldose 1-epimerase MS6_1760 PF13847 Methyltransferase domain MS6_1763 PF01584 CheW-like domain MS6_1763 PF00072 Response regulator receiver domain MS6_1764 PF00480 ROK family MS6_1765 PF00224 Pyruvate kinase, barrel domain MS6_1765 PF02887 Pyruvate kinase, alpha/beta domain MS6_1766 PF01734 Patatin-like phospholipase MS6_1769 PF00209 Sodium:neurotransmitter symporter family MS6_1770 PF02378 Phosphotransferase system, EIIC MS6_1770 PF00367 phosphotransferase system, EIIB MS6_1771 PF01026 TatD related DNase MS6_1772 PF09115 DNA polymerase III, delta subunit, C terminal MS6_1773 PF02223 Thymidylate kinase MS6_1774 PF02618 YceG-like family MS6_1775 PF01063 Amino-transferase class IV MS6_1776 PF00109 Beta-ketoacyl synthase, N-terminal domain MS6_1776 PF02801 Beta-ketoacyl synthase, C-terminal domain MS6_1777 PF00550 Phosphopantetheine attachment site MS6_1779 PF00698 Acyl transferase domain MS6_1780 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MS6_1780 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MS6_1781 PF02504 Fatty acid synthesis protein MS6_1782 PF01783 Ribosomal L32p protein family MS6_1783 PF02620 Large ribosomal RNA subunit accumulation protein YceD MS6_1790 PF02545 Maf-like protein MS6_1791 PF01479 S4 domain MS6_1791 PF00849 RNA pseudouridylate synthase MS6_1792 PF10150 Ribonuclease E/G family MS6_1792 PF00575 S1 RNA binding domain MS6_1792 PF12111 Polyribonucleotide phosphorylase C terminal MS6_1793 PF00916 Sulfate permease family MS6_1793 PF01740 STAS domain MS6_1795 PF00171 Aldehyde dehydrogenase family MS6_1795 PF00465 Iron-containing alcohol dehydrogenase MS6_1796 PF01914 MarC family integral membrane protein MS6_1797 PF01118 Semialdehyde dehydrogenase, NAD binding domain MS6_1797 PF02774 Semialdehyde dehydrogenase, dimerisation domain MS6_1798 PF03553 Na+/H+ antiporter family MS6_1800 PF04245 37-kD nucleoid-associated bacterial protein MS6_1801 PF07208 Protein of unknown function (DUF1414) MS6_1802 PF11893 Domain of unknown function (DUF3413) MS6_1802 PF00884 Sulfatase MS6_1803 PF00850 Histone deacetylase domain MS6_1804 PF01751 Toprim domain MS6_1804 PF01131 DNA topoisomerase MS6_1805 PF00462 Glutaredoxin MS6_1806 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MS6_1806 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MS6_1810 PF04333 MlaA lipoprotein MS6_1812 PF03918 Cytochrome C biogenesis protein MS6_1813 PF08534 Redoxin MS6_1814 PF01578 Cytochrome C assembly protein MS6_1814 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal MS6_1815 PF03100 CcmE MS6_1816 PF04995 Heme exporter protein D (CcmD) MS6_1817 PF01578 Cytochrome C assembly protein MS6_1818 PF03379 CcmB protein MS6_1819 PF00005 ABC transporter MS6_1821 PF01584 CheW-like domain MS6_1823 PF13614 AAA domain MS6_1824 PF01339 CheB methylesterase MS6_1824 PF00072 Response regulator receiver domain MS6_1825 PF01584 CheW-like domain MS6_1825 PF01627 Hpt domain MS6_1825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_1825 PF02895 Signal transducing histidine kinase, homodimeric domain MS6_1825 PF07194 P2 response regulator binding domain MS6_1826 PF04344 Chemotaxis phosphatase, CheZ MS6_1827 PF00072 Response regulator receiver domain MS6_1828 PF04539 Sigma-70 region 3 MS6_1828 PF04545 Sigma-70, region 4 MS6_1828 PF04542 Sigma-70 region 2 MS6_1829 PF10609 NUBPL iron-transfer P-loop NTPase MS6_1830 PF00448 SRP54-type protein, GTPase domain MS6_1831 PF00771 FHIPEP family MS6_1832 PF00300 Histidine phosphatase superfamily (branch 1) MS6_1833 PF05193 Peptidase M16 inactive domain MS6_1833 PF00675 Insulinase (Peptidase family M16) MS6_1835 PF03485 Arginyl tRNA synthetase N terminal domain MS6_1835 PF05746 DALR anticodon binding domain MS6_1835 PF00750 tRNA synthetases class I (R) MS6_1838 PF02421 Ferrous iron transport protein B MS6_1838 PF07664 Ferrous iron transport protein B C terminus MS6_1838 PF07670 Nucleoside recognition MS6_1839 PF04023 FeoA domain MS6_1840 PF12833 Helix-turn-helix domain MS6_1840 PF02311 AraC-like ligand binding domain MS6_1841 PF01297 Zinc-uptake complex component A periplasmic MS6_1842 PF00005 ABC transporter MS6_1843 PF00950 ABC 3 transport family MS6_1844 PF00549 CoA-ligase MS6_1844 PF02629 CoA binding domain MS6_1845 PF08442 ATP-grasp domain MS6_1845 PF00549 CoA-ligase MS6_1846 PF02817 e3 binding domain MS6_1846 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MS6_1846 PF00364 Biotin-requiring enzyme MS6_1847 PF02779 Transketolase, pyrimidine binding domain MS6_1847 PF16870 2-oxoglutarate dehydrogenase C-terminal MS6_1847 PF00676 Dehydrogenase E1 component MS6_1847 PF16078 2-oxoglutarate dehydrogenase N-terminus MS6_1848 PF13085 2Fe-2S iron-sulfur cluster binding domain MS6_1849 PF00890 FAD binding domain MS6_1849 PF02910 Fumarate reductase flavoprotein C-term MS6_1850 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MS6_1851 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MS6_1852 PF00285 Citrate synthase, C-terminal domain MS6_1853 PF01784 NIF3 (NGG1p interacting factor 3) MS6_1855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MS6_1855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MS6_1855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MS6_1855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MS6_1856 PF17206 SeqA protein N-terminal domain MS6_1856 PF03925 SeqA protein C-terminal domain MS6_1857 PF12697 Alpha/beta hydrolase family MS6_1859 PF00258 Flavodoxin MS6_1860 PF04172 LrgB-like family MS6_1861 PF03788 LrgA family MS6_1862 PF03466 LysR substrate binding domain MS6_1862 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_1864 PF01475 Ferric uptake regulator family MS6_1865 PF01118 Semialdehyde dehydrogenase, NAD binding domain MS6_1865 PF02774 Semialdehyde dehydrogenase, dimerisation domain MS6_1866 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MS6_1866 PF11890 Domain of unknown function (DUF3410) MS6_1866 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MS6_1867 PF00109 Beta-ketoacyl synthase, N-terminal domain MS6_1867 PF02801 Beta-ketoacyl synthase, C-terminal domain MS6_1868 PF05430 S-adenosyl-L-methionine-dependent methyltransferase MS6_1868 PF01266 FAD dependent oxidoreductase MS6_1869 PF03358 NADPH-dependent FMN reductase MS6_1870 PF08891 YfcL protein MS6_1871 PF04315 Elongation factor P hydroxylase MS6_1872 PF03458 UPF0126 domain MS6_1873 PF01264 Chorismate synthase MS6_1874 PF05175 Methyltransferase small domain MS6_1875 PF01713 Smr domain MS6_1876 PF01312 FlhB HrpN YscU SpaS Family MS6_1877 PF01311 Bacterial export proteins, family 1 MS6_1878 PF01313 Bacterial export proteins, family 3 MS6_1879 PF00813 FliP family MS6_1881 PF04347 Flagellar biosynthesis protein, FliO MS6_1882 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MS6_1883 PF02154 Flagellar motor switch protein FliM MS6_1883 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MS6_1884 PF03748 Flagellar basal body-associated protein FliL MS6_1887 PF18269 T3SS EscN ATPase C-terminal domain MS6_1887 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MS6_1889 PF14842 FliG N-terminal domain MS6_1889 PF14841 FliG middle domain MS6_1889 PF01706 FliG C-terminal domain MS6_1890 PF01514 Secretory protein of YscJ/FliF family MS6_1890 PF08345 Flagellar M-ring protein C-terminal MS6_1891 PF02049 Flagellar hook-basal body complex protein FliE MS6_1892 PF00158 Sigma-54 interaction domain MS6_1892 PF00072 Response regulator receiver domain MS6_1892 PF02954 Bacterial regulatory protein, Fis family MS6_1893 PF00989 PAS fold MS6_1893 PF00512 His Kinase A (phospho-acceptor) domain MS6_1893 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_1893 PF13493 Domain of unknown function (DUF4118) MS6_1893 PF08447 PAS fold MS6_1893 PF13426 PAS domain MS6_1894 PF00072 Response regulator receiver domain MS6_1894 PF02954 Bacterial regulatory protein, Fis family MS6_1894 PF00158 Sigma-54 interaction domain MS6_1895 PF02561 Flagellar protein FliS MS6_1897 PF02465 Flagellar hook-associated protein 2 N-terminus MS6_1897 PF07196 Flagellin hook IN motif MS6_1897 PF07195 Flagellar hook-associated protein 2 C-terminus MS6_1898 PF03646 FlaG protein MS6_1899 PF00669 Bacterial flagellin N-terminal helical region MS6_1899 PF00700 Bacterial flagellin C-terminal helical region MS6_1899 PF07196 Flagellin hook IN motif MS6_1900 PF00669 Bacterial flagellin N-terminal helical region MS6_1900 PF07196 Flagellin hook IN motif MS6_1900 PF00700 Bacterial flagellin C-terminal helical region MS6_1901 PF00700 Bacterial flagellin C-terminal helical region MS6_1901 PF07196 Flagellin hook IN motif MS6_1901 PF00669 Bacterial flagellin N-terminal helical region MS6_1902 PF04261 Dyp-type peroxidase family MS6_1903 PF11143 Protein of unknown function (DUF2919) MS6_1906 PF03960 ArsC family MS6_1907 PF07687 Peptidase dimerisation domain MS6_1907 PF01546 Peptidase family M20/M25/M40 MS6_1908 PF02557 D-alanyl-D-alanine carboxypeptidase MS6_1910 PF06804 NlpB/DapX lipoprotein MS6_1911 PF00701 Dihydrodipicolinate synthetase family MS6_1913 PF00578 AhpC/TSA family MS6_1914 PF02743 Cache domain MS6_1914 PF00672 HAMP domain MS6_1914 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_1915 PF01594 AI-2E family transporter MS6_1917 PF13181 Tetratricopeptide repeat MS6_1917 PF01435 Peptidase family M48 MS6_1918 PF03960 ArsC family MS6_1919 PF03358 NADPH-dependent FMN reductase MS6_1922 PF00860 Permease family MS6_1923 PF04073 Aminoacyl-tRNA editing domain MS6_1924 PF00149 Calcineurin-like phosphoesterase MS6_1924 PF02872 5'-nucleotidase, C-terminal domain MS6_1925 PF00793 DAHP synthetase I family MS6_1926 PF13369 Transglutaminase-like superfamily MS6_1927 PF04247 Invasion gene expression up-regulator, SirB MS6_1928 PF13847 Methyltransferase domain MS6_1928 PF17827 PrmC N-terminal domain MS6_1929 PF03462 PCRF domain MS6_1929 PF00472 RF-1 domain MS6_1930 PF01488 Shikimate / quinate 5-dehydrogenase MS6_1930 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain MS6_1930 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain MS6_1931 PF03550 Outer membrane lipoprotein LolB MS6_1932 PF00288 GHMP kinases N terminal domain MS6_1932 PF08544 GHMP kinases C terminal MS6_1933 PF14572 Phosphoribosyl synthetase-associated domain MS6_1933 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MS6_1934 PF01195 Peptidyl-tRNA hydrolase MS6_1935 PF01926 50S ribosome-binding GTPase MS6_1935 PF06071 Protein of unknown function (DUF933) MS6_1936 PF07196 Flagellin hook IN motif MS6_1936 PF00669 Bacterial flagellin N-terminal helical region MS6_1936 PF00700 Bacterial flagellin C-terminal helical region MS6_1937 PF00669 Bacterial flagellin N-terminal helical region MS6_1937 PF07196 Flagellin hook IN motif MS6_1937 PF00700 Bacterial flagellin C-terminal helical region MS6_1939 PF07196 Flagellin hook IN motif MS6_1939 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MS6_1940 PF10135 Rod binding protein MS6_1940 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase MS6_1941 PF02119 Flagellar P-ring protein MS6_1942 PF02107 Flagellar L-ring protein MS6_1943 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MS6_1943 PF00460 Flagella basal body rod protein MS6_1944 PF00460 Flagella basal body rod protein MS6_1944 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MS6_1945 PF07559 Flagellar basal body protein FlaE MS6_1945 PF00460 Flagella basal body rod protein MS6_1945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MS6_1946 PF03963 Flagellar hook capping protein - N-terminal region MS6_1946 PF13860 FlgD Ig-like domain MS6_1946 PF13861 FlgD Tudor-like domain MS6_1947 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MS6_1947 PF00460 Flagella basal body rod protein MS6_1948 PF00460 Flagella basal body rod protein MS6_1949 PF01739 CheR methyltransferase, SAM binding domain MS6_1949 PF03705 CheR methyltransferase, all-alpha domain MS6_1950 PF00072 Response regulator receiver domain MS6_1950 PF01584 CheW-like domain MS6_1957 PF08242 Methyltransferase domain MS6_1957 PF00501 AMP-binding enzyme MS6_1957 PF00668 Condensation domain MS6_1957 PF00550 Phosphopantetheine attachment site MS6_1958 PF08021 Siderophore-interacting FAD-binding domain MS6_1958 PF04954 Siderophore-interacting protein MS6_1959 PF07715 TonB-dependent Receptor Plug Domain MS6_1961 PF00691 OmpA family MS6_1961 PF01389 OmpA-like transmembrane domain MS6_1962 PF00749 tRNA synthetases class I (E and Q), catalytic domain MS6_1963 PF00403 Heavy-metal-associated domain MS6_1965 PF00728 Glycosyl hydrolase family 20, catalytic domain MS6_1965 PF02838 Glycosyl hydrolase family 20, domain 2 MS6_1965 PF03173 Putative carbohydrate binding domain MS6_1965 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain MS6_1968 PF01963 TraB family MS6_1970 PF01713 Smr domain MS6_1971 PF00849 RNA pseudouridylate synthase MS6_1971 PF01479 S4 domain MS6_1972 PF08448 PAS fold MS6_1972 PF00990 Diguanylate cyclase, GGDEF domain MS6_1974 PF02769 AIR synthase related protein, C-terminal domain MS6_1974 PF00586 AIR synthase related protein, N-terminal domain MS6_1975 PF00551 Formyl transferase MS6_1976 PF13230 Glutamine amidotransferases class-II MS6_1977 PF13580 SIS domain MS6_1978 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MS6_1978 PF02770 Acyl-CoA dehydrogenase, middle domain MS6_1978 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MS6_1978 PF09317 Domain of unknown function (DUF1974) MS6_1980 PF00929 Exonuclease MS6_1981 PF00075 RNase H MS6_1982 PF08241 Methyltransferase domain MS6_1983 PF00753 Metallo-beta-lactamase superfamily MS6_1983 PF16123 Hydroxyacylglutathione hydrolase C-terminus MS6_1984 PF01464 Transglycosylase SLT domain MS6_1984 PF01476 LysM domain MS6_1985 PF03372 Endonuclease/Exonuclease/phosphatase family MS6_1986 PF00543 Nitrogen regulatory protein P-II MS6_1987 PF05870 Phenolic acid decarboxylase (PAD) MS6_1988 PF00034 Cytochrome c MS6_1989 PF01171 PP-loop family MS6_1989 PF09179 TilS substrate binding domain MS6_1989 PF11734 TilS substrate C-terminal domain MS6_1990 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MS6_1991 PF01336 OB-fold nucleic acid binding domain MS6_1991 PF02811 PHP domain MS6_1991 PF07733 Bacterial DNA polymerase III alpha NTPase domain MS6_1991 PF14579 Helix-hairpin-helix motif MS6_1991 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MS6_1992 PF01351 Ribonuclease HII MS6_1993 PF02684 Lipid-A-disaccharide synthetase MS6_1994 PF00132 Bacterial transferase hexapeptide (six repeats) MS6_1994 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 MS6_1995 PF07977 FabA-like domain MS6_1996 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD MS6_1996 PF00132 Bacterial transferase hexapeptide (six repeats) MS6_1997 PF03938 Outer membrane protein (OmpH-like) MS6_1998 PF01103 Surface antigen MS6_1998 PF07244 Surface antigen variable number repeat MS6_1999 PF17820 PDZ domain MS6_1999 PF02163 Peptidase family M50 MS6_2000 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MS6_2000 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MS6_2000 PF13288 DXP reductoisomerase C-terminal domain MS6_2002 PF01255 Putative undecaprenyl diphosphate synthase MS6_2003 PF01765 Ribosome recycling factor MS6_2004 PF00696 Amino acid kinase family MS6_2005 PF00889 Elongation factor TS MS6_2006 PF00318 Ribosomal protein S2 MS6_2007 PF00557 Metallopeptidase family M24 MS6_2008 PF01909 Nucleotidyltransferase domain MS6_2008 PF01966 HD domain MS6_2008 PF08335 GlnD PII-uridylyltransferase MS6_2009 PF11944 Protein of unknown function (DUF3461) MS6_2010 PF04608 Phosphatidylglycerophosphatase A MS6_2011 PF00586 AIR synthase related protein, N-terminal domain MS6_2011 PF02769 AIR synthase related protein, C-terminal domain MS6_2012 PF01029 NusB family MS6_2013 PF00885 6,7-dimethyl-8-ribityllumazine synthase MS6_2014 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MS6_2014 PF00925 GTP cyclohydrolase II MS6_2015 PF00677 Lumazine binding domain MS6_2016 PF01872 RibD C-terminal domain MS6_2016 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MS6_2017 PF03477 ATP cone domain MS6_2018 PF00171 Aldehyde dehydrogenase family MS6_2019 PF01472 PUA domain MS6_2019 PF00696 Amino acid kinase family MS6_2020 PF07417 Sigma factor-binding transcriptional regulator Crl MS6_2022 PF00156 Phosphoribosyl transferase domain MS6_2023 PF00860 Permease family MS6_2024 PF07687 Peptidase dimerisation domain MS6_2024 PF01546 Peptidase family M20/M25/M40 MS6_2025 PF18030 RimK PreATP-grasp domain MS6_2025 PF08443 RimK-like ATP-grasp domain MS6_2026 PF18030 RimK PreATP-grasp domain MS6_2026 PF08443 RimK-like ATP-grasp domain MS6_2028 PF00209 Sodium:neurotransmitter symporter family MS6_2029 PF00990 Diguanylate cyclase, GGDEF domain MS6_2029 PF17158 Membrane-associated sensor, integral membrane domain MS6_2031 PF00817 impB/mucB/samB family MS6_2031 PF11798 IMS family HHH motif MS6_2033 PF02424 ApbE family MS6_2034 PF00175 Oxidoreductase NAD-binding domain MS6_2034 PF00970 Oxidoreductase FAD-binding domain MS6_2034 PF00111 2Fe-2S iron-sulfur cluster binding domain MS6_2035 PF02508 Rnf-Nqr subunit, membrane protein MS6_2036 PF02508 Rnf-Nqr subunit, membrane protein MS6_2037 PF04205 FMN-binding domain MS6_2038 PF03116 NQR2, RnfD, RnfE family MS6_2039 PF11973 NQRA C-terminal domain MS6_2039 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) MS6_2040 PF01722 BolA-like protein MS6_2041 PF05175 Methyltransferase small domain MS6_2043 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MS6_2044 PF07690 Major Facilitator Superfamily MS6_2046 PF04542 Sigma-70 region 2 MS6_2046 PF04545 Sigma-70, region 4 MS6_2048 PF03502 Nucleoside-specific channel-forming protein, Tsx MS6_2049 PF08546 Ketopantoate reductase PanE/ApbA C terminal MS6_2049 PF02558 Ketopantoate reductase PanE/ApbA MS6_2050 PF01965 DJ-1/PfpI family MS6_2051 PF00266 Aminotransferase class-V MS6_2052 PF02657 Fe-S metabolism associated domain MS6_2053 PF00899 ThiF family MS6_2054 PF06725 3D domain MS6_2054 PF03562 MltA specific insert domain MS6_2056 PF00583 Acetyltransferase (GNAT) family MS6_2056 PF00696 Amino acid kinase family MS6_2058 PF13538 UvrD-like helicase C-terminal domain MS6_2059 PF13361 UvrD-like helicase C-terminal domain MS6_2059 PF00580 UvrD/REP helicase N-terminal domain MS6_2059 PF12705 PD-(D/E)XK nuclease superfamily MS6_2060 PF17946 RecC C-terminal domain MS6_2063 PF07130 YebG protein MS6_2064 PF14602 Hexapeptide repeat of succinyl-transferase MS6_2064 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle MS6_2066 PF00583 Acetyltransferase (GNAT) family MS6_2067 PF18030 RimK PreATP-grasp domain MS6_2067 PF08443 RimK-like ATP-grasp domain MS6_2067 PF02080 TrkA-C domain MS6_2068 PF01544 CorA-like Mg2+ transporter protein MS6_2070 PF01588 Putative tRNA binding domain MS6_2071 PF00356 Bacterial regulatory proteins, lacI family MS6_2072 PF02929 Beta galactosidase small chain MS6_2072 PF16353 Domain of unknown function(DUF4981) MS6_2072 PF00703 Glycosyl hydrolases family 2 MS6_2072 PF02837 Glycosyl hydrolases family 2, sugar binding domain MS6_2072 PF02836 Glycosyl hydrolases family 2, TIM barrel domain MS6_2074 PF00072 Response regulator receiver domain MS6_2075 PF00501 AMP-binding enzyme MS6_2076 PF03144 Elongation factor Tu domain 2 MS6_2076 PF00009 Elongation factor Tu GTP binding domain MS6_2076 PF03764 Elongation factor G, domain IV MS6_2076 PF00679 Elongation factor G C-terminus MS6_2076 PF14492 Elongation Factor G, domain II MS6_2077 PF18073 Rubredoxin metal binding domain MS6_2079 PF18429 Domain of unknown function (DUF5609) MS6_2081 PF01048 Phosphorylase superfamily MS6_2082 PF01676 Metalloenzyme superfamily MS6_2083 PF00591 Glycosyl transferase family, a/b domain MS6_2083 PF02885 Glycosyl transferase family, helical bundle domain MS6_2083 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain MS6_2084 PF01791 DeoC/LacD family aldolase MS6_2086 PF07662 Na+ dependent nucleoside transporter C-terminus MS6_2086 PF07670 Nucleoside recognition MS6_2086 PF01773 Na+ dependent nucleoside transporter N-terminus MS6_2087 PF01026 TatD related DNase MS6_2089 PF03883 Peroxide stress protein YaaA MS6_2090 PF01235 Sodium:alanine symporter family MS6_2093 PF03167 Uracil DNA glycosylase superfamily MS6_2094 PF01261 Xylose isomerase-like TIM barrel MS6_2095 PF01228 Glycine radical MS6_2096 PF00291 Pyridoxal-phosphate dependent enzyme MS6_2096 PF14821 Threonine synthase N terminus MS6_2097 PF00288 GHMP kinases N terminal domain MS6_2097 PF08544 GHMP kinases C terminal MS6_2098 PF00696 Amino acid kinase family MS6_2098 PF01842 ACT domain MS6_2098 PF00742 Homoserine dehydrogenase MS6_2098 PF13840 ACT domain MS6_2098 PF03447 Homoserine dehydrogenase, NAD binding domain MS6_2100 PF03737 Aldolase/RraA MS6_2102 PF00072 Response regulator receiver domain MS6_2102 PF00486 Transcriptional regulatory protein, C terminal MS6_2103 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_2103 PF00072 Response regulator receiver domain MS6_2103 PF00512 His Kinase A (phospho-acceptor) domain MS6_2103 PF18415 Histidine kinase receptor ArcB trans-membrane domain MS6_2103 PF00989 PAS fold MS6_2103 PF01627 Hpt domain MS6_2104 PF01590 GAF domain MS6_2104 PF00990 Diguanylate cyclase, GGDEF domain MS6_2104 PF00360 Phytochrome region MS6_2104 PF00563 EAL domain MS6_2105 PF04055 Radical SAM superfamily MS6_2105 PF16199 Radical_SAM C-terminal domain MS6_2107 PF01645 Conserved region in glutamate synthase MS6_2107 PF04898 Glutamate synthase central domain MS6_2107 PF00310 Glutamine amidotransferases class-II MS6_2107 PF01493 GXGXG motif MS6_2108 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MS6_2108 PF07992 Pyridine nucleotide-disulphide oxidoreductase MS6_2109 PF04898 Glutamate synthase central domain MS6_2109 PF01645 Conserved region in glutamate synthase MS6_2109 PF01493 GXGXG motif MS6_2109 PF00310 Glutamine amidotransferases class-II MS6_2110 PF07992 Pyridine nucleotide-disulphide oxidoreductase MS6_2110 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MS6_2112 PF01048 Phosphorylase superfamily MS6_2114 PF01497 Periplasmic binding protein MS6_2115 PF03458 UPF0126 domain MS6_2116 PF01925 Sulfite exporter TauE/SafE MS6_2117 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MS6_2118 PF00005 ABC transporter MS6_2121 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MS6_2121 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MS6_2121 PF02142 MGS-like domain MS6_2122 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MS6_2122 PF00117 Glutamine amidotransferase class-I MS6_2124 PF05173 Dihydrodipicolinate reductase, C-terminus MS6_2124 PF01113 Dihydrodipicolinate reductase, N-terminus MS6_2125 PF00293 NUDIX domain MS6_2126 PF01043 SecA preprotein cross-linking domain MS6_2126 PF07516 SecA Wing and Scaffold domain MS6_2126 PF07517 SecA DEAD-like domain MS6_2126 PF02810 SEC-C motif MS6_2128 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase MS6_2129 PF12327 FtsZ family, C-terminal domain MS6_2129 PF00091 Tubulin/FtsZ family, GTPase domain MS6_2130 PF02491 SHS2 domain inserted in FTSA MS6_2131 PF08478 POTRA domain, FtsQ-type MS6_2131 PF03799 Cell division protein FtsQ MS6_2132 PF08245 Mur ligase middle domain MS6_2132 PF02875 Mur ligase family, glutamate ligase domain MS6_2132 PF01225 Mur ligase family, catalytic domain MS6_2133 PF03033 Glycosyltransferase family 28 N-terminal domain MS6_2133 PF04101 Glycosyltransferase family 28 C-terminal domain MS6_2134 PF01098 Cell cycle protein MS6_2135 PF02875 Mur ligase family, glutamate ligase domain MS6_2135 PF08245 Mur ligase middle domain MS6_2136 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 MS6_2136 PF00953 Glycosyl transferase family 4 MS6_2137 PF08245 Mur ligase middle domain MS6_2137 PF02875 Mur ligase family, glutamate ligase domain MS6_2137 PF01225 Mur ligase family, catalytic domain MS6_2138 PF08245 Mur ligase middle domain MS6_2138 PF02875 Mur ligase family, glutamate ligase domain MS6_2138 PF01225 Mur ligase family, catalytic domain MS6_2139 PF03717 Penicillin-binding Protein dimerisation domain MS6_2139 PF00905 Penicillin binding protein transpeptidase domain MS6_2140 PF04999 Cell division protein FtsL MS6_2141 PF01795 MraW methylase family MS6_2142 PF07992 Pyridine nucleotide-disulphide oxidoreductase MS6_2142 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MS6_2143 PF00364 Biotin-requiring enzyme MS6_2143 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MS6_2143 PF02817 e3 binding domain MS6_2144 PF17831 Pyruvate dehydrogenase E1 component middle domain MS6_2144 PF00456 Transketolase, thiamine diphosphate binding domain MS6_2145 PF00392 Bacterial regulatory proteins, gntR family MS6_2145 PF07729 FCD domain MS6_2146 PF00149 Calcineurin-like phosphoesterase MS6_2146 PF02872 5'-nucleotidase, C-terminal domain MS6_2147 PF01368 DHH family MS6_2147 PF02272 DHHA1 domain MS6_2147 PF17768 RecJ OB domain MS6_2148 PF10411 Disulfide bond isomerase protein N-terminus MS6_2148 PF13098 Thioredoxin-like domain MS6_2149 PF00589 Phage integrase family MS6_2149 PF02899 Phage integrase, N-terminal SAM-like domain MS6_2150 PF00258 Flavodoxin MS6_2151 PF01510 N-acetylmuramoyl-L-alanine amidase MS6_2152 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain MS6_2152 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain MS6_2153 PF00114 Pilin (bacterial filament) MS6_2153 PF07963 Prokaryotic N-terminal methylation motif MS6_2154 PF00437 Type II/IV secretion system protein MS6_2154 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain MS6_2155 PF00482 Type II secretion system (T2SS), protein F MS6_2156 PF01478 Type IV leader peptidase family MS6_2156 PF06750 Bacterial Peptidase A24 N-terminal domain MS6_2157 PF01121 Dephospho-CoA kinase MS6_2158 PF07072 Cell division protein MS6_2159 PF03884 DNA gyrase inhibitor YacG MS6_2160 PF00521 DNA gyrase/topoisomerase IV, subunit A MS6_2160 PF03989 DNA gyrase C-terminal domain, beta-propeller MS6_2161 PF00204 DNA gyrase B MS6_2161 PF01751 Toprim domain MS6_2161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_2161 PF00986 DNA gyrase B subunit, carboxyl terminus MS6_2163 PF05728 Uncharacterised protein family (UPF0227) MS6_2164 PF00149 Calcineurin-like phosphoesterase MS6_2165 PF06853 Protein of unknown function (DUF1249) MS6_2166 PF00293 NUDIX domain MS6_2167 PF02321 Outer membrane efflux protein MS6_2168 PF00294 pfkB family carbohydrate kinase MS6_2168 PF01467 Cytidylyltransferase-like MS6_2169 PF03710 Glutamate-ammonia ligase adenylyltransferase MS6_2169 PF08335 GlnD PII-uridylyltransferase MS6_2170 PF02743 Cache domain MS6_2170 PF00672 HAMP domain MS6_2170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_2171 PF01928 CYTH domain MS6_2172 PF01865 Protein of unknown function DUF47 MS6_2173 PF01384 Phosphate transporter family MS6_2174 PF08239 Bacterial SH3 domain MS6_2176 PF13401 AAA domain MS6_2176 PF01471 Putative peptidoglycan binding domain MS6_2177 PF01743 Poly A polymerase head domain MS6_2177 PF01966 HD domain MS6_2177 PF12627 Probable RNA and SrmB- binding site of polymerase A MS6_2178 PF00113 Enolase, C-terminal TIM barrel domain MS6_2178 PF03952 Enolase, N-terminal domain MS6_2179 PF00117 Glutamine amidotransferase class-I MS6_2179 PF06418 CTP synthase N-terminus MS6_2181 PF03819 MazG nucleotide pyrophosphohydrolase domain MS6_2182 PF13291 ACT domain MS6_2182 PF02824 TGS domain MS6_2182 PF04607 Region found in RelA / SpoT proteins MS6_2183 PF05958 tRNA (Uracil-5-)-methyltransferase MS6_2183 PF01938 TRAM domain MS6_2184 PF00672 HAMP domain MS6_2184 PF01627 Hpt domain MS6_2184 PF00072 Response regulator receiver domain MS6_2184 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_2184 PF00512 His Kinase A (phospho-acceptor) domain MS6_2184 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MS6_2186 PF00990 Diguanylate cyclase, GGDEF domain MS6_2189 PF01648 4'-phosphopantetheinyl transferase superfamily MS6_2190 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ MS6_2191 PF02565 Recombination protein O C terminal MS6_2191 PF11967 Recombination protein O N terminal MS6_2192 PF07650 KH domain MS6_2192 PF01926 50S ribosome-binding GTPase MS6_2193 PF14622 Ribonuclease-III-like MS6_2193 PF00035 Double-stranded RNA binding motif MS6_2194 PF10502 Signal peptidase, peptidase S26 MS6_2195 PF03144 Elongation factor Tu domain 2 MS6_2195 PF00679 Elongation factor G C-terminus MS6_2195 PF00009 Elongation factor Tu GTP binding domain MS6_2195 PF06421 GTP-binding protein LepA C-terminus MS6_2197 PF17188 MucB/RseB C-terminal domain MS6_2197 PF03888 MucB/RseB N-terminal domain MS6_2198 PF03872 Anti sigma-E protein RseA, N-terminal domain MS6_2198 PF03873 Anti sigma-E protein RseA, C-terminal domain MS6_2199 PF04542 Sigma-70 region 2 MS6_2199 PF08281 Sigma-70, region 4 MS6_2200 PF00890 FAD binding domain MS6_2200 PF02910 Fumarate reductase flavoprotein C-term MS6_2202 PF03937 Flavinator of succinate dehydrogenase MS6_2205 PF01494 FAD binding domain MS6_2206 PF01494 FAD binding domain MS6_2207 PF03695 Uncharacterised protein family (UPF0149) MS6_2208 PF05164 Cell division protein ZapA MS6_2209 PF01812 5-formyltetrahydrofolate cyclo-ligase family MS6_2210 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MS6_2211 PF01842 ACT domain MS6_2211 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MS6_2211 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MS6_2212 PF10369 Small subunit of acetolactate synthase MS6_2213 PF00205 Thiamine pyrophosphate enzyme, central domain MS6_2213 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MS6_2213 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MS6_2214 PF00501 AMP-binding enzyme MS6_2215 PF03466 LysR substrate binding domain MS6_2215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_2217 PF01569 PAP2 superfamily MS6_2219 PF08502 LeuA allosteric (dimerisation) domain MS6_2219 PF00682 HMGL-like MS6_2220 PF00180 Isocitrate/isopropylmalate dehydrogenase MS6_2221 PF00330 Aconitase family (aconitate hydratase) MS6_2222 PF00694 Aconitase C-terminal domain MS6_2224 PF00072 Response regulator receiver domain MS6_2226 PF03739 Lipopolysaccharide export system permease LptF/LptG MS6_2227 PF03739 Lipopolysaccharide export system permease LptF/LptG MS6_2228 PF02789 Cytosol aminopeptidase family, N-terminal domain MS6_2228 PF00883 Cytosol aminopeptidase family, catalytic domain MS6_2229 PF04364 DNA polymerase III chi subunit, HolC MS6_2230 PF10458 Valyl tRNA synthetase tRNA binding arm MS6_2230 PF08264 Anticodon-binding domain of tRNA MS6_2230 PF00133 tRNA synthetases class I (I, L, M and V) MS6_2231 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MS6_2231 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MS6_2232 PF00849 RNA pseudouridylate synthase MS6_2233 PF18339 RapA N-terminal Tudor like domain 1 MS6_2233 PF12137 RNA polymerase recycling family C-terminal MS6_2233 PF00271 Helicase conserved C-terminal domain MS6_2233 PF00176 SNF2 family N-terminal domain MS6_2233 PF18337 RapA N-terminal Tudor like domain MS6_2235 PF02562 PhoH-like protein MS6_2235 PF13638 PIN domain MS6_2236 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MS6_2236 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MS6_2237 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MS6_2237 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MS6_2238 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain MS6_2238 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain MS6_2239 PF01042 Endoribonuclease L-PSP MS6_2240 PF01553 Acyltransferase MS6_2241 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MS6_2242 PF01722 BolA-like protein MS6_2244 PF05494 MlaC protein MS6_2245 PF02470 MlaD protein MS6_2246 PF02405 Permease MlaE MS6_2247 PF00005 ABC transporter MS6_2248 PF01699 Sodium/calcium exchanger protein MS6_2249 PF00571 CBS domain MS6_2249 PF01380 SIS domain MS6_2252 PF03968 OstA-like protein MS6_2253 PF00005 ABC transporter MS6_2253 PF12399 Branched-chain amino acid ATP-binding cassette transporter MS6_2254 PF00309 Sigma-54 factor, Activator interacting domain (AID) MS6_2254 PF04963 Sigma-54 factor, core binding domain MS6_2254 PF04552 Sigma-54, DNA binding domain MS6_2255 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MS6_2256 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MS6_2257 PF03668 P-loop ATPase protein family MS6_2258 PF00381 PTS HPr component phosphorylation site MS6_2259 PF03448 MgtE intracellular N domain MS6_2259 PF00571 CBS domain MS6_2259 PF01769 Divalent cation transporter MS6_2260 PF01523 Putative modulator of DNA gyrase MS6_2261 PF04751 Protein of unknown function (DUF615) MS6_2262 PF00005 ABC transporter MS6_2263 PF00528 Binding-protein-dependent transport system inner membrane component MS6_2265 PF02441 Flavoprotein MS6_2266 PF01225 Mur ligase family, catalytic domain MS6_2266 PF02875 Mur ligase family, glutamate ligase domain MS6_2266 PF08245 Mur ligase middle domain MS6_2267 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain MS6_2268 PF00719 Inorganic pyrophosphatase MS6_2269 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like MS6_2270 PF04357 TamB, inner membrane protein subunit of TAM complex MS6_2271 PF01103 Surface antigen MS6_2271 PF07244 Surface antigen variable number repeat MS6_2271 PF17243 POTRA domain TamA domain 1 MS6_2272 PF01625 Peptide methionine sulfoxide reductase MS6_2273 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) MS6_2274 PF10795 Protein of unknown function (DUF2607) MS6_2276 PF00005 ABC transporter MS6_2281 PF00009 Elongation factor Tu GTP binding domain MS6_2282 PF01507 Phosphoadenosine phosphosulfate reductase family MS6_2283 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MS6_2283 PF14824 Sirohaem biosynthesis protein central MS6_2283 PF10414 Sirohaem synthase dimerisation region MS6_2284 PF00149 Calcineurin-like phosphoesterase MS6_2284 PF02872 5'-nucleotidase, C-terminal domain MS6_2286 PF00271 Helicase conserved C-terminal domain MS6_2286 PF03880 DbpA RNA binding domain MS6_2286 PF00270 DEAD/DEAH box helicase MS6_2287 PF13673 Acetyltransferase (GNAT) domain MS6_2288 PF00892 EamA-like transporter family MS6_2290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MS6_2290 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MS6_2292 PF01196 Ribosomal protein L17 MS6_2293 PF01000 RNA polymerase Rpb3/RpoA insert domain MS6_2293 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MS6_2293 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MS6_2294 PF01479 S4 domain MS6_2294 PF00163 Ribosomal protein S4/S9 N-terminal domain MS6_2295 PF00411 Ribosomal protein S11 MS6_2296 PF00416 Ribosomal protein S13/S18 MS6_2297 PF00444 Ribosomal protein L36 MS6_2298 PF00344 SecY translocase MS6_2299 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MS6_2300 PF00327 Ribosomal protein L30p/L7e MS6_2301 PF03719 Ribosomal protein S5, C-terminal domain MS6_2301 PF00333 Ribosomal protein S5, N-terminal domain MS6_2302 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MS6_2303 PF00347 Ribosomal protein L6 MS6_2304 PF00410 Ribosomal protein S8 MS6_2305 PF00253 Ribosomal protein S14p/S29e MS6_2306 PF00673 ribosomal L5P family C-terminus MS6_2306 PF00281 Ribosomal protein L5 MS6_2307 PF00467 KOW motif MS6_2307 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MS6_2308 PF00238 Ribosomal protein L14p/L23e MS6_2309 PF00366 Ribosomal protein S17 MS6_2310 PF00831 Ribosomal L29 protein MS6_2311 PF00252 Ribosomal protein L16p/L10e MS6_2312 PF07650 KH domain MS6_2312 PF00189 Ribosomal protein S3, C-terminal domain MS6_2313 PF00237 Ribosomal protein L22p/L17e MS6_2314 PF00203 Ribosomal protein S19 MS6_2315 PF03947 Ribosomal Proteins L2, C-terminal domain MS6_2315 PF00181 Ribosomal Proteins L2, RNA binding domain MS6_2316 PF00276 Ribosomal protein L23 MS6_2317 PF00573 Ribosomal protein L4/L1 family MS6_2318 PF00297 Ribosomal protein L3 MS6_2319 PF00338 Ribosomal protein S10p/S20e MS6_2320 PF08032 RNA 2'-O ribose methyltransferase substrate binding MS6_2320 PF00588 SpoU rRNA Methylase family MS6_2321 PF00575 S1 RNA binding domain MS6_2321 PF00773 RNB domain MS6_2321 PF08206 Ribonuclease B OB domain MS6_2321 PF08461 Ribonuclease R winged-helix domain MS6_2321 PF17876 Cold shock domain MS6_2322 PF00884 Sulfatase MS6_2322 PF11893 Domain of unknown function (DUF3413) MS6_2323 PF08238 Sel1 repeat MS6_2324 PF00709 Adenylosuccinate synthetase MS6_2325 PF01112 Asparaginase MS6_2326 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MS6_2328 PF00999 Sodium/hydrogen exchanger family MS6_2328 PF02254 TrkA-N domain MS6_2329 PF02525 Flavodoxin-like fold MS6_2330 PF12848 ABC transporter MS6_2330 PF00005 ABC transporter MS6_2332 PF00561 alpha/beta hydrolase fold MS6_2333 PF06794 Uncharacterised protein family (UPF0270) MS6_2334 PF00485 Phosphoribulokinase / Uridine kinase family MS6_2335 PF00027 Cyclic nucleotide-binding domain MS6_2335 PF13545 Crp-like helix-turn-helix domain MS6_2337 PF00171 Aldehyde dehydrogenase family MS6_2338 PF04958 Arginine N-succinyltransferase beta subunit MS6_2339 PF00202 Aminotransferase class-III MS6_2340 PF00117 Glutamine amidotransferase class-I MS6_2341 PF00919 Uncharacterized protein family UPF0004 MS6_2341 PF04055 Radical SAM superfamily MS6_2341 PF18693 TRAM domain MS6_2344 PF00579 tRNA synthetases class I (W and Y) MS6_2345 PF13419 Haloacid dehalogenase-like hydrolase MS6_2346 PF00834 Ribulose-phosphate 3 epimerase family MS6_2347 PF02086 D12 class N6 adenine-specific DNA methyltransferase MS6_2349 PF01761 3-dehydroquinate synthase MS6_2350 PF01202 Shikimate kinase MS6_2351 PF00263 Bacterial type II and III secretion system protein MS6_2351 PF03958 Bacterial type II/III secretion system short domain MS6_2351 PF11741 AMIN domain MS6_2351 PF07660 Secretin and TonB N terminus short domain MS6_2356 PF00912 Transglycosylase MS6_2356 PF17092 Penicillin-binding protein OB-like domain MS6_2356 PF00905 Penicillin binding protein transpeptidase domain MS6_2357 PF03466 LysR substrate binding domain MS6_2357 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_2358 PF00462 Glutaredoxin MS6_2358 PF08534 Redoxin MS6_2359 PF07992 Pyridine nucleotide-disulphide oxidoreductase MS6_2359 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MS6_2361 PF00206 Lyase MS6_2361 PF14698 Argininosuccinate lyase C-terminal MS6_2362 PF00764 Arginosuccinate synthase MS6_2363 PF00696 Amino acid kinase family MS6_2364 PF01118 Semialdehyde dehydrogenase, NAD binding domain MS6_2364 PF02774 Semialdehyde dehydrogenase, dimerisation domain MS6_2365 PF01546 Peptidase family M20/M25/M40 MS6_2365 PF07687 Peptidase dimerisation domain MS6_2366 PF00311 Phosphoenolpyruvate carboxylase MS6_2368 PF06426 Serine acetyltransferase, N-terminal MS6_2368 PF00132 Bacterial transferase hexapeptide (six repeats) MS6_2369 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MS6_2369 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MS6_2370 PF02556 Preprotein translocase subunit SecB MS6_2371 PF00581 Rhodanese-like domain MS6_2372 PF00152 tRNA synthetases class II (D, K and N) MS6_2373 PF00890 FAD binding domain MS6_2373 PF02910 Fumarate reductase flavoprotein C-term MS6_2374 PF13183 4Fe-4S dicluster domain MS6_2374 PF13085 2Fe-2S iron-sulfur cluster binding domain MS6_2375 PF02300 Fumarate reductase subunit C MS6_2376 PF02313 Fumarate reductase subunit D MS6_2377 PF09285 Elongation factor P, C-terminal MS6_2377 PF08207 Elongation factor P (EF-P) KOW-like domain MS6_2377 PF01132 Elongation factor P (EF-P) OB domain MS6_2378 PF04055 Radical SAM superfamily MS6_2380 PF00118 TCP-1/cpn60 chaperonin family MS6_2381 PF00166 Chaperonin 10 Kd subunit MS6_2382 PF08220 DeoR-like helix-turn-helix domain MS6_2382 PF00455 DeoR C terminal sensor domain MS6_2386 PF00121 Triosephosphate isomerase MS6_2388 PF03737 Aldolase/RraA MS6_2389 PF01040 UbiA prenyltransferase family MS6_2390 PF00004 ATPase family associated with various cellular activities (AAA) MS6_2390 PF10431 C-terminal, D2-small domain, of ClpB protein MS6_2390 PF07724 AAA domain (Cdc48 subfamily) MS6_2391 PF00227 Proteasome subunit MS6_2392 PF05036 Sporulation related domain MS6_2394 PF00356 Bacterial regulatory proteins, lacI family MS6_2395 PF18074 Primosomal protein N C-terminal domain MS6_2395 PF17764 3′ DNA-binding domain (3′BD) MS6_2395 PF00271 Helicase conserved C-terminal domain MS6_2395 PF00270 DEAD/DEAH box helicase MS6_2395 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MS6_2396 PF01197 Ribosomal protein L31 MS6_2398 PF00390 Malic enzyme, N-terminal domain MS6_2398 PF03949 Malic enzyme, NAD binding domain MS6_2399 PF01340 Met Apo-repressor, MetJ MS6_2400 PF01053 Cys/Met metabolism PLP-dependent enzyme MS6_2401 PF00696 Amino acid kinase family MS6_2401 PF00742 Homoserine dehydrogenase MS6_2401 PF03447 Homoserine dehydrogenase, NAD binding domain MS6_2402 PF02219 Methylenetetrahydrofolate reductase MS6_2403 PF06005 Cell division protein ZapB MS6_2404 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded MS6_2405 PF00365 Phosphofructokinase MS6_2406 PF16916 Dimerisation domain of Zinc Transporter MS6_2406 PF01545 Cation efflux family MS6_2408 PF00072 Response regulator receiver domain MS6_2408 PF00486 Transcriptional regulatory protein, C terminal MS6_2409 PF00672 HAMP domain MS6_2409 PF00512 His Kinase A (phospho-acceptor) domain MS6_2409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_2409 PF16527 Two-component sensor protein CpxA, periplasmic domain MS6_2410 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MS6_2410 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MS6_2411 PF00588 SpoU rRNA Methylase family MS6_2412 PF04186 FxsA cytoplasmic membrane protein MS6_2413 PF00990 Diguanylate cyclase, GGDEF domain MS6_2413 PF17158 Membrane-associated sensor, integral membrane domain MS6_2414 PF00206 Lyase MS6_2414 PF10415 Fumarase C C-terminus MS6_2415 PF03605 Anaerobic c4-dicarboxylate membrane transporter MS6_2416 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MS6_2416 PF03714 Bacterial pullanase-associated domain MS6_2416 PF18494 Pullulanase Ins domain MS6_2416 PF17967 Pullulanase N2 domain MS6_2416 PF11852 Domain of unknown function (DUF3372) MS6_2417 PF11412 Disulphide bond corrector protein DsbC MS6_2417 PF02683 Cytochrome C biogenesis protein transmembrane region MS6_2418 PF00196 Bacterial regulatory proteins, luxR family MS6_2418 PF00072 Response regulator receiver domain MS6_2419 PF00999 Sodium/hydrogen exchanger family MS6_2419 PF03471 Transporter associated domain MS6_2419 PF02080 TrkA-C domain MS6_2421 PF00474 Sodium:solute symporter family MS6_2422 PF02592 Putative vitamin uptake transporter MS6_2423 PF00625 Guanylate kinase MS6_2424 PF01192 RNA polymerase Rpb6 MS6_2425 PF13291 ACT domain MS6_2425 PF04607 Region found in RelA / SpoT proteins MS6_2425 PF02824 TGS domain MS6_2426 PF00270 DEAD/DEAH box helicase MS6_2426 PF17191 RecG wedge domain MS6_2426 PF00271 Helicase conserved C-terminal domain MS6_2427 PF00860 Permease family MS6_2428 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_2428 PF00512 His Kinase A (phospho-acceptor) domain MS6_2428 PF00672 HAMP domain MS6_2429 PF00072 Response regulator receiver domain MS6_2429 PF00486 Transcriptional regulatory protein, C terminal MS6_2430 PF03449 Transcription elongation factor, N-terminal MS6_2430 PF01272 Transcription elongation factor, GreA/GreB, C-term MS6_2431 PF16921 Tex protein YqgF-like domain MS6_2431 PF09371 Tex-like protein N-terminal domain MS6_2431 PF00575 S1 RNA binding domain MS6_2431 PF17674 HHH domain MS6_2433 PF00561 alpha/beta hydrolase fold MS6_2435 PF00156 Phosphoribosyl transferase domain MS6_2436 PF01106 NifU-like domain MS6_2436 PF01521 Iron-sulphur cluster biosynthesis MS6_2437 PF00293 NUDIX domain MS6_2438 PF00459 Inositol monophosphatase family MS6_2439 PF01203 Type II secretion system (T2SS), protein N MS6_2440 PF04612 Type II secretion system (T2SS), protein M MS6_2441 PF05134 Type II secretion system (T2SS), protein L MS6_2441 PF12693 GspL periplasmic domain MS6_2442 PF03934 Type II secretion system (T2SS), protein K MS6_2443 PF11612 Type II secretion system (T2SS), protein J MS6_2443 PF07963 Prokaryotic N-terminal methylation motif MS6_2444 PF07963 Prokaryotic N-terminal methylation motif MS6_2444 PF02501 Type II secretion system (T2SS), protein I MS6_2445 PF12019 Type II transport protein GspH MS6_2446 PF07963 Prokaryotic N-terminal methylation motif MS6_2446 PF08334 Type II secretion system (T2SS), protein G MS6_2447 PF00482 Type II secretion system (T2SS), protein F MS6_2448 PF00437 Type II/IV secretion system protein MS6_2449 PF03958 Bacterial type II/III secretion system short domain MS6_2449 PF00263 Bacterial type II and III secretion system protein MS6_2450 PF11356 Type II secretion system protein C MS6_2451 PF01479 S4 domain MS6_2452 PF01430 Hsp33 protein MS6_2453 PF01293 Phosphoenolpyruvate carboxykinase MS6_2455 PF09500 Putative thioesterase (yiiD_Cterm) MS6_2455 PF00583 Acetyltransferase (GNAT) family MS6_2456 PF02580 D-Tyr-tRNA(Tyr) deacylase MS6_2457 PF03631 Virulence factor BrkB MS6_2461 PF03951 Glutamine synthetase, beta-Grasp domain MS6_2461 PF00120 Glutamine synthetase, catalytic domain MS6_2463 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_2463 PF00989 PAS fold MS6_2463 PF00512 His Kinase A (phospho-acceptor) domain MS6_2464 PF00072 Response regulator receiver domain MS6_2464 PF02954 Bacterial regulatory protein, Fis family MS6_2464 PF00158 Sigma-54 interaction domain MS6_2465 PF00563 EAL domain MS6_2465 PF00990 Diguanylate cyclase, GGDEF domain MS6_2465 PF03707 Bacterial signalling protein N terminal repeat MS6_2465 PF13188 PAS domain MS6_2466 PF00962 Adenosine/AMP deaminase MS6_2468 PF01177 Asp/Glu/Hydantoin racemase MS6_2469 PF04151 Bacterial pre-peptidase C-terminal domain MS6_2469 PF05922 Peptidase inhibitor I9 MS6_2469 PF00082 Subtilase family MS6_2470 PF00593 TonB dependent receptor MS6_2470 PF07715 TonB-dependent Receptor Plug Domain MS6_2471 PF05958 tRNA (Uracil-5-)-methyltransferase MS6_2473 PF00440 Bacterial regulatory proteins, tetR family MS6_2474 PF07992 Pyridine nucleotide-disulphide oxidoreductase MS6_2474 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MS6_2475 PF00140 Sigma-70 factor, region 1.2 MS6_2475 PF04542 Sigma-70 region 2 MS6_2475 PF04545 Sigma-70, region 4 MS6_2476 PF18075 FtsX extracellular domain MS6_2477 PF00005 ABC transporter MS6_2478 PF02881 SRP54-type protein, helical bundle domain MS6_2478 PF00448 SRP54-type protein, GTPase domain MS6_2485 PF00210 Ferritin-like domain MS6_2487 PF00563 EAL domain MS6_2487 PF08668 HDOD domain MS6_2488 PF01810 LysE type translocator MS6_2489 PF12146 Serine aminopeptidase, S33 MS6_2493 PF00563 EAL domain MS6_2493 PF08495 FIST N domain MS6_2493 PF10442 FIST C domain MS6_2493 PF00990 Diguanylate cyclase, GGDEF domain MS6_2494 PF13419 Haloacid dehalogenase-like hydrolase MS6_2495 PF02899 Phage integrase, N-terminal SAM-like domain MS6_2495 PF00589 Phage integrase family MS6_2496 PF04340 Protein of unknown function, DUF484 MS6_2497 PF01678 Diaminopimelate epimerase MS6_2498 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MS6_2498 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MS6_2500 PF01491 Frataxin-like domain MS6_2501 PF01295 Adenylate cyclase, class-I MS6_2501 PF12633 Adenylate cyclase NT domain MS6_2503 PF03900 Porphobilinogen deaminase, C-terminal domain MS6_2503 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MS6_2504 PF02602 Uroporphyrinogen-III synthase HemD MS6_2505 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase MS6_2506 PF07219 HemY protein N-terminus MS6_2507 PF06969 HemN C-terminal domain MS6_2507 PF04055 Radical SAM superfamily MS6_2508 PF10675 Protein of unknown function (DUF2489) MS6_2509 PF04220 Der GTPase activator (YihI) MS6_2511 PF00034 Cytochrome c MS6_2512 PF01926 50S ribosome-binding GTPase MS6_2514 PF01367 5'-3' exonuclease, C-terminal SAM fold MS6_2514 PF01612 3'-5' exonuclease MS6_2514 PF00476 DNA polymerase family A MS6_2514 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MS6_2517 PF00490 Delta-aminolevulinic acid dehydratase MS6_2519 PF01026 TatD related DNase MS6_2520 PF00581 Rhodanese-like domain MS6_2521 PF01694 Rhomboid family MS6_2521 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease MS6_2522 PF02203 Tar ligand binding domain homologue MS6_2522 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_2522 PF00672 HAMP domain MS6_2523 PF03748 Flagellar basal body-associated protein FliL MS6_2524 PF04345 Chorismate lyase MS6_2525 PF01040 UbiA prenyltransferase family MS6_2526 PF01553 Acyltransferase MS6_2527 PF01726 LexA DNA binding domain MS6_2527 PF00717 Peptidase S24-like MS6_2529 PF01554 MatE MS6_2530 PF00034 Cytochrome c MS6_2530 PF03150 Di-haem cytochrome c peroxidase MS6_2531 PF00902 Sec-independent protein translocase protein (TatC) MS6_2532 PF02416 mttA/Hcf106 family MS6_2533 PF02416 mttA/Hcf106 family MS6_2534 PF03109 ABC1 family MS6_2535 PF02036 SCP-2 sterol transfer family MS6_2536 PF01209 ubiE/COQ5 methyltransferase family MS6_2537 PF02646 RmuC family MS6_2540 PF10625 Universal stress protein B (UspB) MS6_2541 PF00210 Ferritin-like domain MS6_2542 PF00582 Universal stress protein family MS6_2543 PF00892 EamA-like transporter family MS6_2545 PF04445 Putative SAM-dependent methyltransferase MS6_2546 PF00990 Diguanylate cyclase, GGDEF domain MS6_2546 PF00563 EAL domain MS6_2546 PF08448 PAS fold MS6_2547 PF01037 Lrp/AsnC ligand binding domain MS6_2549 PF07690 Major Facilitator Superfamily MS6_2550 PF03466 LysR substrate binding domain MS6_2550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_2551 PF01321 Creatinase/Prolidase N-terminal domain MS6_2551 PF00557 Metallopeptidase family M24 MS6_2551 PF00557 Metallopeptidase family M24 MS6_2551 PF01321 Creatinase/Prolidase N-terminal domain MS6_2552 PF06968 Biotin and Thiamin Synthesis associated domain MS6_2552 PF04055 Radical SAM superfamily MS6_2553 PF05690 Thiazole biosynthesis protein ThiG MS6_2554 PF00899 ThiF family MS6_2555 PF02581 Thiamine monophosphate synthase MS6_2556 PF13667 ThiC-associated domain MS6_2556 PF01964 Radical SAM ThiC family MS6_2557 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MS6_2559 PF00132 Bacterial transferase hexapeptide (six repeats) MS6_2561 PF18317 Shikimate 5'-dehydrogenase C-terminal domain MS6_2561 PF01488 Shikimate / quinate 5-dehydrogenase MS6_2561 PF08501 Shikimate dehydrogenase substrate binding domain MS6_2562 PF01218 Coproporphyrinogen III oxidase MS6_2563 PF01300 Telomere recombination MS6_2564 PF00731 AIR carboxylase MS6_2565 PF02222 ATP-grasp domain MS6_2565 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MS6_2566 PF01396 Topoisomerase DNA binding C4 zinc finger MS6_2567 PF04361 Protein of unknown function (DUF494) MS6_2568 PF02481 DNA recombination-mediator protein A MS6_2568 PF17782 DprA winged helix domain MS6_2569 PF01476 LysM domain MS6_2570 PF01327 Polypeptide deformylase MS6_2571 PF00551 Formyl transferase MS6_2571 PF02911 Formyl transferase, C-terminal domain MS6_2572 PF01189 16S rRNA methyltransferase RsmB/F MS6_2572 PF01029 NusB family MS6_2573 PF02080 TrkA-C domain MS6_2573 PF02254 TrkA-N domain MS6_2574 PF02386 Cation transport protein MS6_2576 PF03006 Haemolysin-III related MS6_2577 PF07070 SpoOM protein MS6_2579 PF06288 Protein of unknown function (DUF1040) MS6_2580 PF12801 4Fe-4S binding domain MS6_2580 PF13746 4Fe-4S dicluster domain MS6_2580 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase MS6_2581 PF01636 Phosphotransferase enzyme family MS6_2582 PF01323 DSBA-like thioredoxin domain MS6_2583 PF01553 Acyltransferase MS6_2584 PF13335 Magnesium chelatase, subunit ChlI C-terminal MS6_2584 PF01078 Magnesium chelatase, subunit ChlI MS6_2585 PF00205 Thiamine pyrophosphate enzyme, central domain MS6_2585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MS6_2585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MS6_2587 PF01063 Amino-transferase class IV MS6_2588 PF00920 Dehydratase family MS6_2589 PF00585 C-terminal regulatory domain of Threonine dehydratase MS6_2589 PF00291 Pyridoxal-phosphate dependent enzyme MS6_2590 PF00107 Zinc-binding dehydrogenase MS6_2590 PF08240 Alcohol dehydrogenase GroES-like domain MS6_2592 PF01206 Sulfurtransferase TusA MS6_2594 PF01169 Uncharacterized protein family UPF0016 MS6_2595 PF02091 Glycyl-tRNA synthetase alpha subunit MS6_2596 PF05746 DALR anticodon binding domain MS6_2596 PF02092 Glycyl-tRNA synthetase beta subunit MS6_2597 PF00155 Aminotransferase class I and II MS6_2598 PF00011 Hsp20/alpha crystallin family MS6_2601 PF18053 DNA gyrase B subunit insert domain MS6_2601 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_2601 PF00986 DNA gyrase B subunit, carboxyl terminus MS6_2601 PF00204 DNA gyrase B MS6_2601 PF01751 Toprim domain MS6_2602 PF02463 RecF/RecN/SMC N terminal domain MS6_2603 PF02768 DNA polymerase III beta subunit, C-terminal domain MS6_2603 PF02767 DNA polymerase III beta subunit, central domain MS6_2603 PF00712 DNA polymerase III beta subunit, N-terminal domain MS6_2604 PF11638 DnaA N-terminal domain MS6_2604 PF00308 Bacterial dnaA protein MS6_2604 PF08299 Bacterial dnaA protein helix-turn-helix MS6_A0001 PF17200 Single Cache domain 2 MS6_A0001 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A0001 PF00672 HAMP domain MS6_A0002 PF10928 Protein of unknown function (DUF2810) MS6_A0003 PF17874 MalT-like TPR region MS6_A0003 PF00196 Bacterial regulatory proteins, luxR family MS6_A0004 PF00343 Carbohydrate phosphorylase MS6_A0005 PF02446 4-alpha-glucanotransferase MS6_A0006 PF00128 Alpha amylase, catalytic domain MS6_A0006 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MS6_A0006 PF02806 Alpha amylase, C-terminal all-beta domain MS6_A0007 PF05638 Type VI secretion system effector, Hcp MS6_A0008 PF16671 Actin cross-linking domain MS6_A0008 PF04717 Type VI secretion system, phage-baseplate injector MS6_A0013 PF01757 Acyltransferase family MS6_A0013 PF00842 Alanine racemase, C-terminal domain MS6_A0013 PF01168 Alanine racemase, N-terminal domain MS6_A0015 PF00939 Sodium:sulfate symporter transmembrane region MS6_A0016 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) MS6_A0017 PF08329 Chitinase A, N-terminal domain MS6_A0017 PF00704 Glycosyl hydrolases family 18 MS6_A0020 PF02743 Cache domain MS6_A0020 PF00672 HAMP domain MS6_A0020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A0024 PF01569 PAP2 superfamily MS6_A0025 PF00375 Sodium:dicarboxylate symporter family MS6_A0027 PF02630 SCO1/SenC MS6_A0031 PF03616 Sodium/glutamate symporter MS6_A0032 PF07238 PilZ domain MS6_A0032 PF12945 Flagellar protein YcgR MS6_A0035 PF00529 HlyD membrane-fusion protein of T1SS MS6_A0035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MS6_A0036 PF11742 Protein of unknown function (DUF3302) MS6_A0037 PF00990 Diguanylate cyclase, GGDEF domain MS6_A0040 PF01048 Phosphorylase superfamily MS6_A0041 PF08349 Protein of unknown function (DUF1722) MS6_A0042 PF13411 MerR HTH family regulatory protein MS6_A0043 PF00875 DNA photolyase MS6_A0043 PF03441 FAD binding domain of DNA photolyase MS6_A0044 PF17969 L,D-transpeptidase C-terminal domain MS6_A0044 PF01476 LysM domain MS6_A0044 PF03734 L,D-transpeptidase catalytic domain MS6_A0047 PF00271 Helicase conserved C-terminal domain MS6_A0047 PF00270 DEAD/DEAH box helicase MS6_A0048 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain MS6_A0048 PF00326 Prolyl oligopeptidase family MS6_A0049 PF07715 TonB-dependent Receptor Plug Domain MS6_A0049 PF00593 TonB dependent receptor MS6_A0053 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A0053 PF12729 Four helix bundle sensory module for signal transduction MS6_A0053 PF00672 HAMP domain MS6_A0054 PF12849 PBP superfamily domain MS6_A0055 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A0056 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A0057 PF00005 ABC transporter MS6_A0058 PF00563 EAL domain MS6_A0058 PF00990 Diguanylate cyclase, GGDEF domain MS6_A0058 PF03707 Bacterial signalling protein N terminal repeat MS6_A0062 PF01740 STAS domain MS6_A0062 PF00916 Sulfate permease family MS6_A0064 PF01551 Peptidase family M23 MS6_A0064 PF08525 Opacity-associated protein A N-terminal motif MS6_A0064 PF01476 LysM domain MS6_A0065 PF00563 EAL domain MS6_A0065 PF00990 Diguanylate cyclase, GGDEF domain MS6_A0065 PF03707 Bacterial signalling protein N terminal repeat MS6_A0065 PF13188 PAS domain MS6_A0066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A0066 PF03466 LysR substrate binding domain MS6_A0067 PF07690 Major Facilitator Superfamily MS6_A0068 PF00376 MerR family regulatory protein MS6_A0068 PF09278 MerR, DNA binding MS6_A0072 PF00375 Sodium:dicarboxylate symporter family MS6_A0074 PF02001 Protein of unknown function DUF134 MS6_A0079 PF02868 Thermolysin metallopeptidase, alpha-helical domain MS6_A0079 PF01447 Thermolysin metallopeptidase, catalytic domain MS6_A0079 PF01483 Proprotein convertase P-domain MS6_A0079 PF07504 Fungalysin/Thermolysin Propeptide Motif MS6_A0081 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family MS6_A0081 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain MS6_A0082 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MS6_A0082 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MS6_A0083 PF00581 Rhodanese-like domain MS6_A0084 PF00196 Bacterial regulatory proteins, luxR family MS6_A0084 PF00563 EAL domain MS6_A0085 PF13419 Haloacid dehalogenase-like hydrolase MS6_A0086 PF00916 Sulfate permease family MS6_A0086 PF01740 STAS domain MS6_A0087 PF00849 RNA pseudouridylate synthase MS6_A0099 PF10431 C-terminal, D2-small domain, of ClpB protein MS6_A0099 PF07724 AAA domain (Cdc48 subfamily) MS6_A0099 PF00004 ATPase family associated with various cellular activities (AAA) MS6_A0099 PF17871 AAA lid domain MS6_A0105 PF04717 Type VI secretion system, phage-baseplate injector MS6_A0105 PF16671 Actin cross-linking domain MS6_A0109 PF05025 RbsD / FucU transport protein family MS6_A0110 PF00005 ABC transporter MS6_A0111 PF02653 Branched-chain amino acid transport system / permease component MS6_A0112 PF13407 Periplasmic binding protein domain MS6_A0113 PF00294 pfkB family carbohydrate kinase MS6_A0114 PF00356 Bacterial regulatory proteins, lacI family MS6_A0115 PF04973 Nicotinamide mononucleotide transporter MS6_A0116 PF01048 Phosphorylase superfamily MS6_A0118 PF03009 Glycerophosphoryl diester phosphodiesterase family MS6_A0119 PF07690 Major Facilitator Superfamily MS6_A0122 PF02743 Cache domain MS6_A0122 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A0122 PF00512 His Kinase A (phospho-acceptor) domain MS6_A0123 PF00072 Response regulator receiver domain MS6_A0123 PF00158 Sigma-54 interaction domain MS6_A0123 PF02954 Bacterial regulatory protein, Fis family MS6_A0128 PF01266 FAD dependent oxidoreductase MS6_A0129 PF12561 ToxR activated gene A lipoprotein domain MS6_A0129 PF00041 Fibronectin type III domain MS6_A0130 PF01327 Polypeptide deformylase MS6_A0132 PF03334 Na+/H+ antiporter subunit MS6_A0133 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) MS6_A0137 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MS6_A0137 PF00361 Proton-conducting membrane transporter MS6_A0137 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter MS6_A0137 PF13244 Domain of unknown function (DUF4040) MS6_A0139 PF00582 Universal stress protein family MS6_A0140 PF03222 Tryptophan/tyrosine permease family MS6_A0141 PF01212 Beta-eliminating lyase MS6_A0144 PF12843 Putative quorum-sensing-regulated virulence factor MS6_A0146 PF08448 PAS fold MS6_A0146 PF00990 Diguanylate cyclase, GGDEF domain MS6_A0146 PF00563 EAL domain MS6_A0147 PF00313 'Cold-shock' DNA-binding domain MS6_A0151 PF13519 von Willebrand factor type A domain MS6_A0151 PF07584 Aerotolerance regulator N-terminal MS6_A0154 PF01882 Protein of unknown function DUF58 MS6_A0155 PF07726 ATPase family associated with various cellular activities (AAA) MS6_A0155 PF17863 AAA lid domain MS6_A0156 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A0156 PF00672 HAMP domain MS6_A0156 PF02743 Cache domain MS6_A0160 PF01773 Na+ dependent nucleoside transporter N-terminus MS6_A0160 PF07662 Na+ dependent nucleoside transporter C-terminus MS6_A0160 PF07670 Nucleoside recognition MS6_A0161 PF01546 Peptidase family M20/M25/M40 MS6_A0161 PF07687 Peptidase dimerisation domain MS6_A0163 PF01590 GAF domain MS6_A0163 PF00158 Sigma-54 interaction domain MS6_A0164 PF00970 Oxidoreductase FAD-binding domain MS6_A0164 PF00042 Globin MS6_A0164 PF00175 Oxidoreductase NAD-binding domain MS6_A0165 PF00313 'Cold-shock' DNA-binding domain MS6_A0166 PF03889 Alternative ribosome-rescue factor A MS6_A0170 PF00072 Response regulator receiver domain MS6_A0172 PF01256 Carbohydrate kinase MS6_A0172 PF03853 YjeF-related protein N-terminus MS6_A0173 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MS6_A0173 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MS6_A0175 PF07885 Ion channel MS6_A0177 PF00478 IMP dehydrogenase / GMP reductase domain MS6_A0178 PF00145 C-5 cytosine-specific DNA methylase MS6_A0182 PF01797 Transposase IS200 like MS6_A0184 PF00271 Helicase conserved C-terminal domain MS6_A0184 PF00270 DEAD/DEAH box helicase MS6_A0185 PF03605 Anaerobic c4-dicarboxylate membrane transporter MS6_A0187 PF02540 NAD synthase MS6_A0188 PF01467 Cytidylyltransferase-like MS6_A0189 PF11849 Domain of unknown function (DUF3369) MS6_A0190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A0190 PF00512 His Kinase A (phospho-acceptor) domain MS6_A0190 PF00497 Bacterial extracellular solute-binding proteins, family 3 MS6_A0192 PF03553 Na+/H+ antiporter family MS6_A0193 PF07690 Major Facilitator Superfamily MS6_A0196 PF00990 Diguanylate cyclase, GGDEF domain MS6_A0196 PF08448 PAS fold MS6_A0197 PF00657 GDSL-like Lipase/Acylhydrolase MS6_A0198 PF16458 Beta-prism lectin MS6_A0198 PF12563 Hemolytic toxin N terminal MS6_A0198 PF07968 Leukocidin/Hemolysin toxin family MS6_A0199 PF12729 Four helix bundle sensory module for signal transduction MS6_A0199 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A0199 PF00672 HAMP domain MS6_A0200 PF00561 alpha/beta hydrolase fold MS6_A0201 PF03280 Proteobacterial lipase chaperone protein MS6_A0202 PF05547 Immune inhibitor A peptidase M6 MS6_A0202 PF00801 PKD domain MS6_A0208 PF01032 FecCD transport family MS6_A0209 PF01032 FecCD transport family MS6_A0210 PF00005 ABC transporter MS6_A0211 PF12833 Helix-turn-helix domain MS6_A0212 PF00593 TonB dependent receptor MS6_A0212 PF07715 TonB-dependent Receptor Plug Domain MS6_A0214 PF00871 Acetokinase family MS6_A0217 PF00672 HAMP domain MS6_A0217 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A0217 PF00512 His Kinase A (phospho-acceptor) domain MS6_A0218 PF00486 Transcriptional regulatory protein, C terminal MS6_A0218 PF00072 Response regulator receiver domain MS6_A0220 PF01261 Xylose isomerase-like TIM barrel MS6_A0221 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MS6_A0223 PF00596 Class II Aldolase and Adducin N-terminal domain MS6_A0224 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MS6_A0225 PF03611 PTS system sugar-specific permease component MS6_A0226 PF00455 DeoR C terminal sensor domain MS6_A0226 PF08220 DeoR-like helix-turn-helix domain MS6_A0228 PF01292 Prokaryotic cytochrome b561 MS6_A0229 PF00128 Alpha amylase, catalytic domain MS6_A0231 PF00132 Bacterial transferase hexapeptide (six repeats) MS6_A0234 PF00486 Transcriptional regulatory protein, C terminal MS6_A0234 PF00072 Response regulator receiver domain MS6_A0235 PF14827 Double sensory domain of two-component sensor kinase MS6_A0235 PF13426 PAS domain MS6_A0235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A0235 PF00512 His Kinase A (phospho-acceptor) domain MS6_A0235 PF00672 HAMP domain MS6_A0245 PF07690 Major Facilitator Superfamily MS6_A0246 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A0246 PF00672 HAMP domain MS6_A0246 PF02743 Cache domain MS6_A0248 PF00768 D-alanyl-D-alanine carboxypeptidase MS6_A0248 PF07943 Penicillin-binding protein 5, C-terminal domain MS6_A0253 PF00194 Eukaryotic-type carbonic anhydrase MS6_A0254 PF01797 Transposase IS200 like MS6_A0255 PF02347 Glycine cleavage system P-protein MS6_A0257 PF01597 Glycine cleavage H-protein MS6_A0258 PF00464 Serine hydroxymethyltransferase MS6_A0261 PF08669 Glycine cleavage T-protein C-terminal barrel domain MS6_A0261 PF01571 Aminomethyltransferase folate-binding domain MS6_A0263 PF01609 Transposase DDE domain MS6_A0263 PF05598 Transposase domain (DUF772) MS6_A0268 PF02824 TGS domain MS6_A0268 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MS6_A0268 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MS6_A0268 PF03129 Anticodon binding domain MS6_A0269 PF00707 Translation initiation factor IF-3, C-terminal domain MS6_A0269 PF05198 Translation initiation factor IF-3, N-terminal domain MS6_A0270 PF01632 Ribosomal protein L35 MS6_A0271 PF00453 Ribosomal protein L20 MS6_A0272 PF00589 Phage integrase family MS6_A0272 PF13495 Phage integrase, N-terminal SAM-like domain MS6_A0274 PF13302 Acetyltransferase (GNAT) domain MS6_A0286 PF04229 GrpB protein MS6_A0298 PF01527 Transposase MS6_A0299 PF00665 Integrase core domain MS6_A0302 PF04229 GrpB protein MS6_A0307 PF08378 Nuclease-related domain MS6_A0319 PF01965 DJ-1/PfpI family MS6_A0319 PF12833 Helix-turn-helix domain MS6_A0323 PF13599 Pentapeptide repeats (9 copies) MS6_A0324 PF13302 Acetyltransferase (GNAT) domain MS6_A0332 PF17676 LD-carboxypeptidase C-terminal domain MS6_A0332 PF02016 LD-carboxypeptidase N-terminal domain MS6_A0338 PF04229 GrpB protein MS6_A0342 PF08212 Lipocalin-like domain MS6_A0347 PF00583 Acetyltransferase (GNAT) family MS6_A0349 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH MS6_A0365 PF00583 Acetyltransferase (GNAT) family MS6_A0366 PF04229 GrpB protein MS6_A0374 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MS6_A0379 PF04229 GrpB protein MS6_A0391 PF00293 NUDIX domain MS6_A0394 PF13302 Acetyltransferase (GNAT) domain MS6_A0396 PF08212 Lipocalin-like domain MS6_A0403 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ MS6_A0413 PF02016 LD-carboxypeptidase N-terminal domain MS6_A0413 PF17676 LD-carboxypeptidase C-terminal domain MS6_A0415 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB MS6_A0416 PF01381 Helix-turn-helix MS6_A0420 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MS6_A0440 PF17676 LD-carboxypeptidase C-terminal domain MS6_A0440 PF02016 LD-carboxypeptidase N-terminal domain MS6_A0443 PF04229 GrpB protein MS6_A0465 PF13302 Acetyltransferase (GNAT) domain MS6_A0479 PF04229 GrpB protein MS6_A0490 PF02016 LD-carboxypeptidase N-terminal domain MS6_A0490 PF17676 LD-carboxypeptidase C-terminal domain MS6_A0495 PF08212 Lipocalin-like domain MS6_A0496 PF05016 ParE toxin of type II toxin-antitoxin system, parDE MS6_A0499 PF01555 DNA methylase MS6_A0516 PF01527 Transposase MS6_A0517 PF00665 Integrase core domain MS6_A0521 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system MS6_A0522 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA MS6_A0525 PF05598 Transposase domain (DUF772) MS6_A0525 PF01609 Transposase DDE domain MS6_A0526 PF00132 Bacterial transferase hexapeptide (six repeats) MS6_A0529 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MS6_A0542 PF07859 alpha/beta hydrolase fold MS6_A0545 PF01797 Transposase IS200 like MS6_A0558 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MS6_A0559 PF01527 Transposase MS6_A0560 PF00665 Integrase core domain MS6_A0563 PF03477 ATP cone domain MS6_A0563 PF13597 Anaerobic ribonucleoside-triphosphate reductase MS6_A0565 PF00155 Aminotransferase class I and II MS6_A0566 PF18030 RimK PreATP-grasp domain MS6_A0566 PF08443 RimK-like ATP-grasp domain MS6_A0568 PF02378 Phosphotransferase system, EIIC MS6_A0568 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MS6_A0569 PF00294 pfkB family carbohydrate kinase MS6_A0570 PF00381 PTS HPr component phosphorylation site MS6_A0570 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MS6_A0571 PF00356 Bacterial regulatory proteins, lacI family MS6_A0571 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family MS6_A0572 PF12320 Type 5 capsule protein repressor C-terminal domain MS6_A0572 PF00149 Calcineurin-like phosphoesterase MS6_A0573 PF13476 AAA domain MS6_A0574 PF00072 Response regulator receiver domain MS6_A0574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A0575 PF00155 Aminotransferase class I and II MS6_A0577 PF00654 Voltage gated chloride channel MS6_A0578 PF02492 CobW/HypB/UreG, nucleotide-binding domain MS6_A0578 PF07683 Cobalamin synthesis protein cobW C-terminal domain MS6_A0579 PF01926 50S ribosome-binding GTPase MS6_A0580 PF02705 K+ potassium transporter MS6_A0581 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MS6_A0581 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg MS6_A0581 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase MS6_A0581 PF10371 Domain of unknown function MS6_A0581 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II MS6_A0582 PF13493 Domain of unknown function (DUF4118) MS6_A0582 PF02702 Osmosensitive K+ channel His kinase sensor domain MS6_A0582 PF00512 His Kinase A (phospho-acceptor) domain MS6_A0582 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A0583 PF00072 Response regulator receiver domain MS6_A0583 PF00486 Transcriptional regulatory protein, C terminal MS6_A0584 PF02416 mttA/Hcf106 family MS6_A0585 PF09335 SNARE associated Golgi protein MS6_A0587 PF10388 EAL-domain associated signalling protein domain MS6_A0587 PF00563 EAL domain MS6_A0589 PF01292 Prokaryotic cytochrome b561 MS6_A0590 PF04264 YceI-like domain MS6_A0591 PF01226 Formate/nitrite transporter MS6_A0592 PF03466 LysR substrate binding domain MS6_A0592 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A0593 PF06496 Protein of unknown function (DUF1097) MS6_A0594 PF11398 Protein of unknown function (DUF2813) MS6_A0595 PF00149 Calcineurin-like phosphoesterase MS6_A0595 PF02872 5'-nucleotidase, C-terminal domain MS6_A0596 PF03741 Integral membrane protein TerC family MS6_A0599 PF03831 PhnA domain MS6_A0599 PF08274 PhnA Zinc-Ribbon MS6_A0606 PF17151 Periplasmic sensor domain MS6_A0606 PF00990 Diguanylate cyclase, GGDEF domain MS6_A0609 PF00990 Diguanylate cyclase, GGDEF domain MS6_A0609 PF17158 Membrane-associated sensor, integral membrane domain MS6_A0612 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MS6_A0612 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MS6_A0612 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch MS6_A0613 PF02233 NAD(P) transhydrogenase beta subunit MS6_A0615 PF00486 Transcriptional regulatory protein, C terminal MS6_A0615 PF00072 Response regulator receiver domain MS6_A0618 PF03701 Uncharacterised protein family (UPF0181) MS6_A0619 PF01797 Transposase IS200 like MS6_A0620 PF01253 Translation initiation factor SUI1 MS6_A0622 PF01820 D-ala D-ala ligase N-terminus MS6_A0622 PF07478 D-ala D-ala ligase C-terminus MS6_A0624 PF00583 Acetyltransferase (GNAT) family MS6_A0624 PF13607 Succinyl-CoA ligase like flavodoxin domain MS6_A0624 PF13380 CoA binding domain MS6_A0625 PF03466 LysR substrate binding domain MS6_A0625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A0626 PF00593 TonB dependent receptor MS6_A0626 PF07715 TonB-dependent Receptor Plug Domain MS6_A0627 PF12793 Sugar transport-related sRNA regulator N-term MS6_A0627 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MS6_A0630 PF03061 Thioesterase superfamily MS6_A0635 PF02798 Glutathione S-transferase, N-terminal domain MS6_A0635 PF00043 Glutathione S-transferase, C-terminal domain MS6_A0638 PF12804 MobA-like NTP transferase domain MS6_A0638 PF03479 Plants and Prokaryotes Conserved (PCC) domain MS6_A0638 PF00132 Bacterial transferase hexapeptide (six repeats) MS6_A0639 PF00005 ABC transporter MS6_A0639 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MS6_A0640 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A0640 PF12911 N-terminal TM domain of oligopeptide transport permease C MS6_A0641 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A0642 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MS6_A0647 PF00854 POT family MS6_A0649 PF07702 UTRA domain MS6_A0649 PF00392 Bacterial regulatory proteins, gntR family MS6_A0650 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A0651 PF00005 ABC transporter MS6_A0653 PF00266 Aminotransferase class-V MS6_A0655 PF13419 Haloacid dehalogenase-like hydrolase MS6_A0656 PF14760 Rnk N-terminus MS6_A0656 PF01272 Transcription elongation factor, GreA/GreB, C-term MS6_A0657 PF13419 Haloacid dehalogenase-like hydrolase MS6_A0658 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A0658 PF03466 LysR substrate binding domain MS6_A0662 PF01741 Large-conductance mechanosensitive channel, MscL MS6_A0664 PF01268 Formate--tetrahydrofolate ligase MS6_A0665 PF01625 Peptide methionine sulfoxide reductase MS6_A0665 PF01641 SelR domain MS6_A0666 PF01227 GTP cyclohydrolase I MS6_A0667 PF03453 MoeA N-terminal region (domain I and II) MS6_A0667 PF00994 Probable molybdopterin binding domain MS6_A0667 PF03454 MoeA C-terminal region (domain IV) MS6_A0668 PF00899 ThiF family MS6_A0670 PF00581 Rhodanese-like domain MS6_A0671 PF04198 Putative sugar-binding domain MS6_A0672 PF00923 Transaldolase/Fructose-6-phosphate aldolase MS6_A0673 PF02779 Transketolase, pyrimidine binding domain MS6_A0673 PF02780 Transketolase, C-terminal domain MS6_A0673 PF00456 Transketolase, thiamine diphosphate binding domain MS6_A0677 PF07516 SecA Wing and Scaffold domain MS6_A0677 PF02810 SEC-C motif MS6_A0677 PF01043 SecA preprotein cross-linking domain MS6_A0677 PF07517 SecA DEAD-like domain MS6_A0679 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MS6_A0679 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MS6_A0682 PF06942 GlpM protein MS6_A0685 PF03466 LysR substrate binding domain MS6_A0685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A0686 PF03992 Antibiotic biosynthesis monooxygenase MS6_A0687 PF00881 Nitroreductase family MS6_A0688 PF00873 AcrB/AcrD/AcrF family MS6_A0691 PF04143 Sulphur transport MS6_A0694 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MS6_A0694 PF07992 Pyridine nucleotide-disulphide oxidoreductase MS6_A0703 PF02378 Phosphotransferase system, EIIC MS6_A0703 PF00367 phosphotransferase system, EIIB MS6_A0705 PF00251 Glycosyl hydrolases family 32 N-terminal domain MS6_A0705 PF08244 Glycosyl hydrolases family 32 C terminal MS6_A0706 PF00294 pfkB family carbohydrate kinase MS6_A0707 PF16901 C-terminal domain of alpha-glycerophosphate oxidase MS6_A0707 PF01266 FAD dependent oxidoreductase MS6_A0708 PF00672 HAMP domain MS6_A0708 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A0709 PF00691 OmpA family MS6_A0709 PF13488 Glycine zipper MS6_A0710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MS6_A0710 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MS6_A0711 PF13419 Haloacid dehalogenase-like hydrolase MS6_A0712 PF00672 HAMP domain MS6_A0712 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A0712 PF12729 Four helix bundle sensory module for signal transduction MS6_A0713 PF03606 C4-dicarboxylate anaerobic carrier MS6_A0714 PF03315 Serine dehydratase beta chain MS6_A0714 PF03313 Serine dehydratase alpha chain MS6_A0715 PF00474 Sodium:solute symporter family MS6_A0719 PF00356 Bacterial regulatory proteins, lacI family MS6_A0720 PF00196 Bacterial regulatory proteins, luxR family MS6_A0720 PF00072 Response regulator receiver domain MS6_A0721 PF00672 HAMP domain MS6_A0721 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A0721 PF07730 Histidine kinase MS6_A0721 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term MS6_A0722 PF12838 4Fe-4S dicluster domain MS6_A0722 PF13187 4Fe-4S dicluster domain MS6_A0724 PF01568 Molydopterin dinucleotide binding domain MS6_A0724 PF00384 Molybdopterin oxidoreductase MS6_A0724 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MS6_A0725 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) MS6_A0726 PF03264 NapC/NirT cytochrome c family, N-terminal region MS6_A0728 PF01966 HD domain MS6_A0729 PF00196 Bacterial regulatory proteins, luxR family MS6_A0729 PF00072 Response regulator receiver domain MS6_A0730 PF07730 Histidine kinase MS6_A0730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A0730 PF05231 MASE1 MS6_A0731 PF07690 Major Facilitator Superfamily MS6_A0733 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A0734 PF08402 TOBE domain MS6_A0734 PF00005 ABC transporter MS6_A0735 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus MS6_A0737 PF00108 Thiolase, N-terminal domain MS6_A0737 PF02803 Thiolase, C-terminal domain MS6_A0738 PF00106 short chain dehydrogenase MS6_A0739 PF07549 SecD/SecF GG Motif MS6_A0739 PF02355 Protein export membrane protein MS6_A0740 PF13721 SecD export protein N-terminal TM region MS6_A0740 PF02355 Protein export membrane protein MS6_A0740 PF07549 SecD/SecF GG Motif MS6_A0743 PF00990 Diguanylate cyclase, GGDEF domain MS6_A0743 PF17158 Membrane-associated sensor, integral membrane domain MS6_A0744 PF00483 Nucleotidyl transferase MS6_A0745 PF00704 Glycosyl hydrolases family 18 MS6_A0745 PF06483 Chitinase C MS6_A0747 PF00465 Iron-containing alcohol dehydrogenase MS6_A0749 PF14532 Sigma-54 interaction domain MS6_A0749 PF00072 Response regulator receiver domain MS6_A0749 PF02954 Bacterial regulatory protein, Fis family MS6_A0750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A0750 PF02743 Cache domain MS6_A0750 PF00512 His Kinase A (phospho-acceptor) domain MS6_A0753 PF07690 Major Facilitator Superfamily MS6_A0754 PF02887 Pyruvate kinase, alpha/beta domain MS6_A0754 PF00224 Pyruvate kinase, barrel domain MS6_A0755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A0755 PF00672 HAMP domain MS6_A0755 PF00512 His Kinase A (phospho-acceptor) domain MS6_A0755 PF01627 Hpt domain MS6_A0755 PF00072 Response regulator receiver domain MS6_A0756 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family MS6_A0757 PF02142 MGS-like domain MS6_A0758 PF00857 Isochorismatase family MS6_A0760 PF01219 Prokaryotic diacylglycerol kinase MS6_A0763 PF13361 UvrD-like helicase C-terminal domain MS6_A0763 PF12462 DNA helicase IV / RNA helicase N terminal MS6_A0763 PF00580 UvrD/REP helicase N-terminal domain MS6_A0764 PF12805 FUSC-like inner membrane protein yccS MS6_A0765 PF00072 Response regulator receiver domain MS6_A0765 PF13188 PAS domain MS6_A0765 PF08448 PAS fold MS6_A0765 PF00512 His Kinase A (phospho-acceptor) domain MS6_A0765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A0770 PF00005 ABC transporter MS6_A0770 PF03459 TOBE domain MS6_A0771 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A0773 PF07685 CobB/CobQ-like glutamine amidotransferase domain MS6_A0773 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MS6_A0781 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A0781 PF00072 Response regulator receiver domain MS6_A0781 PF09308 LuxQ, periplasmic MS6_A0781 PF00512 His Kinase A (phospho-acceptor) domain MS6_A0782 PF13407 Periplasmic binding protein domain MS6_A0784 PF01541 GIY-YIG catalytic domain MS6_A0785 PF04337 Protein of unknown function, DUF480 MS6_A0788 PF04363 Protein of unknown function (DUF496) MS6_A0791 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MS6_A0791 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MS6_A0792 PF00230 Major intrinsic protein MS6_A0794 PF01266 FAD dependent oxidoreductase MS6_A0794 PF04324 BFD-like [2Fe-2S] binding domain MS6_A0795 PF00890 FAD binding domain MS6_A0796 PF13183 4Fe-4S dicluster domain MS6_A0796 PF02754 Cysteine-rich domain MS6_A0797 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MS6_A0797 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MS6_A0798 PF00085 Thioredoxin MS6_A0799 PF07690 Major Facilitator Superfamily MS6_A0802 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A0802 PF03466 LysR substrate binding domain MS6_A0803 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A0804 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A0805 PF00497 Bacterial extracellular solute-binding proteins, family 3 MS6_A0806 PF00005 ABC transporter MS6_A0807 PF05762 VWA domain containing CoxE-like protein MS6_A0808 PF17868 AAA lid domain MS6_A0808 PF12592 Protein of unknown function (DUF3763) MS6_A0808 PF07728 AAA domain (dynein-related subfamily) MS6_A0809 PF00293 NUDIX domain MS6_A0810 PF01212 Beta-eliminating lyase MS6_A0811 PF00034 Cytochrome c MS6_A0812 PF08361 MAATS-type transcriptional repressor, C-terminal region MS6_A0812 PF00440 Bacterial regulatory proteins, tetR family MS6_A0813 PF00271 Helicase conserved C-terminal domain MS6_A0813 PF00270 DEAD/DEAH box helicase MS6_A0814 PF04336 Acyl carrier protein phosphodiesterase MS6_A0816 PF03222 Tryptophan/tyrosine permease family MS6_A0817 PF12729 Four helix bundle sensory module for signal transduction MS6_A0817 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A0817 PF00672 HAMP domain MS6_A0819 PF16363 GDP-mannose 4,6 dehydratase MS6_A0820 PF03746 LamB/YcsF family MS6_A0822 PF02626 Carboxyltransferase domain, subdomain A and B MS6_A0824 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MS6_A0824 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MS6_A0827 PF00005 ABC transporter MS6_A0828 PF13472 GDSL-like Lipase/Acylhydrolase family MS6_A0829 PF12241 Trans-2-enoyl-CoA reductase catalytic region MS6_A0829 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase MS6_A0829 PF07055 Enoyl reductase FAD binding domain MS6_A0830 PF00498 FHA domain MS6_A0830 PF00990 Diguanylate cyclase, GGDEF domain MS6_A0830 PF00563 EAL domain MS6_A0832 PF00226 DnaJ domain MS6_A0832 PF00684 DnaJ central domain MS6_A0832 PF01556 DnaJ C terminal domain MS6_A0835 PF00665 Integrase core domain MS6_A0836 PF01527 Transposase MS6_A0839 PF02796 Helix-turn-helix domain of resolvase MS6_A0839 PF00239 Resolvase, N terminal domain MS6_A0841 PF13419 Haloacid dehalogenase-like hydrolase MS6_A0844 PF00294 pfkB family carbohydrate kinase MS6_A0845 PF00884 Sulfatase MS6_A0847 PF00270 DEAD/DEAH box helicase MS6_A0847 PF03880 DbpA RNA binding domain MS6_A0847 PF00271 Helicase conserved C-terminal domain MS6_A0848 PF00575 S1 RNA binding domain MS6_A0848 PF00773 RNB domain MS6_A0848 PF08206 Ribonuclease B OB domain MS6_A0850 PF12849 PBP superfamily domain MS6_A0851 PF01575 MaoC like domain MS6_A0852 PF04244 Deoxyribodipyrimidine photo-lyase-related protein MS6_A0853 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading MS6_A0853 PF18416 N-acetylglucosamine binding protein domain 2 MS6_A0854 PF04151 Bacterial pre-peptidase C-terminal domain MS6_A0854 PF02868 Thermolysin metallopeptidase, alpha-helical domain MS6_A0854 PF01447 Thermolysin metallopeptidase, catalytic domain MS6_A0854 PF03413 Peptidase propeptide and YPEB domain MS6_A0854 PF07504 Fungalysin/Thermolysin Propeptide Motif MS6_A0855 PF04389 Peptidase family M28 MS6_A0855 PF04151 Bacterial pre-peptidase C-terminal domain MS6_A0856 PF00491 Arginase family MS6_A0857 PF17944 Arginine decarboxylase C-terminal helical extension MS6_A0857 PF17810 Arginine decarboxylase helical bundle domain MS6_A0857 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MS6_A0860 PF03448 MgtE intracellular N domain MS6_A0860 PF00571 CBS domain MS6_A0860 PF01769 Divalent cation transporter MS6_A0861 PF00166 Chaperonin 10 Kd subunit MS6_A0862 PF00118 TCP-1/cpn60 chaperonin family MS6_A0864 PF00696 Amino acid kinase family MS6_A0864 PF13840 ACT domain MS6_A0865 PF06339 Ectoine synthase MS6_A0866 PF00202 Aminotransferase class-III MS6_A0867 PF00583 Acetyltransferase (GNAT) family MS6_A0868 PF01329 Pterin 4 alpha carbinolamine dehydratase MS6_A0869 PF00351 Biopterin-dependent aromatic amino acid hydroxylase MS6_A0870 PF00501 AMP-binding enzyme MS6_A0870 PF13193 AMP-binding enzyme C-terminal domain MS6_A0874 PF03466 LysR substrate binding domain MS6_A0874 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A0876 PF00892 EamA-like transporter family MS6_A0877 PF00132 Bacterial transferase hexapeptide (six repeats) MS6_A0877 PF14602 Hexapeptide repeat of succinyl-transferase MS6_A0877 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal MS6_A0878 PF03471 Transporter associated domain MS6_A0878 PF01595 Cyclin M transmembrane N-terminal domain MS6_A0878 PF00571 CBS domain MS6_A0879 PF02566 OsmC-like protein MS6_A0881 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MS6_A0882 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MS6_A0882 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MS6_A0885 PF13520 Amino acid permease MS6_A0886 PF00990 Diguanylate cyclase, GGDEF domain MS6_A0888 PF00072 Response regulator receiver domain MS6_A0888 PF04397 LytTr DNA-binding domain MS6_A0889 PF06580 Histidine kinase MS6_A0889 PF07694 5TMR of 5TMR-LYT MS6_A0889 PF13492 GAF domain MS6_A0889 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A0892 PF00005 ABC transporter MS6_A0892 PF12704 MacB-like periplasmic core domain MS6_A0892 PF02687 FtsX-like permease family MS6_A0893 PF00005 ABC transporter MS6_A0897 PF00248 Aldo/keto reductase family MS6_A0898 PF00128 Alpha amylase, catalytic domain MS6_A0900 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) MS6_A0901 PF12262 Bacterial virulence factor lipase N-terminal MS6_A0902 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A0902 PF08447 PAS fold MS6_A0902 PF13426 PAS domain MS6_A0903 PF04151 Bacterial pre-peptidase C-terminal domain MS6_A0903 PF07504 Fungalysin/Thermolysin Propeptide Motif MS6_A0903 PF03413 Peptidase propeptide and YPEB domain MS6_A0903 PF01447 Thermolysin metallopeptidase, catalytic domain MS6_A0903 PF02868 Thermolysin metallopeptidase, alpha-helical domain MS6_A0904 PF03922 OmpW family MS6_A0905 PF00665 Integrase core domain MS6_A0906 PF01527 Transposase MS6_A0907 PF03922 OmpW family MS6_A0910 PF00768 D-alanyl-D-alanine carboxypeptidase MS6_A0911 PF00392 Bacterial regulatory proteins, gntR family MS6_A0911 PF00155 Aminotransferase class I and II MS6_A0913 PF01654 Cytochrome bd terminal oxidase subunit I MS6_A0914 PF02322 Cytochrome bd terminal oxidase subunit II MS6_A0916 PF00291 Pyridoxal-phosphate dependent enzyme MS6_A0917 PF03466 LysR substrate binding domain MS6_A0917 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A0925 PF08240 Alcohol dehydrogenase GroES-like domain MS6_A0925 PF00107 Zinc-binding dehydrogenase MS6_A0926 PF00155 Aminotransferase class I and II MS6_A0927 PF01053 Cys/Met metabolism PLP-dependent enzyme MS6_A0928 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A0928 PF03466 LysR substrate binding domain MS6_A0929 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MS6_A0934 PF01966 HD domain MS6_A0935 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain MS6_A0935 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain MS6_A0936 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MS6_A0937 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MS6_A0937 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain MS6_A0942 PF02595 Glycerate kinase family MS6_A0943 PF02447 GntP family permease MS6_A0944 PF13556 PucR C-terminal helix-turn-helix domain MS6_A0944 PF17853 GGDEF-like domain MS6_A0944 PF05651 Putative sugar diacid recognition MS6_A0945 PF00672 HAMP domain MS6_A0945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A0946 PF01243 Pyridoxamine 5'-phosphate oxidase MS6_A0947 PF06228 Haem utilisation ChuX/HutX MS6_A0948 PF04055 Radical SAM superfamily MS6_A0949 PF03544 Gram-negative bacterial TonB protein C-terminal MS6_A0950 PF01618 MotA/TolQ/ExbB proton channel family MS6_A0951 PF02472 Biopolymer transport protein ExbD/TolR MS6_A0952 PF01497 Periplasmic binding protein MS6_A0953 PF01032 FecCD transport family MS6_A0954 PF00005 ABC transporter MS6_A0960 PF02743 Cache domain MS6_A0960 PF00672 HAMP domain MS6_A0960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A0961 PF03476 MOSC N-terminal beta barrel domain MS6_A0961 PF03473 MOSC domain MS6_A0961 PF03473 MOSC domain MS6_A0961 PF00111 2Fe-2S iron-sulfur cluster binding domain MS6_A0961 PF00111 2Fe-2S iron-sulfur cluster binding domain MS6_A0961 PF03476 MOSC N-terminal beta barrel domain MS6_A0963 PF01979 Amidohydrolase family MS6_A0965 PF05656 Protein of unknown function (DUF805) MS6_A0967 PF05958 tRNA (Uracil-5-)-methyltransferase MS6_A0968 PF05661 Protein of unknown function (DUF808) MS6_A0970 PF00313 'Cold-shock' DNA-binding domain MS6_A0973 PF00072 Response regulator receiver domain MS6_A0973 PF12833 Helix-turn-helix domain MS6_A0975 PF00990 Diguanylate cyclase, GGDEF domain MS6_A0975 PF08448 PAS fold MS6_A0976 PF00455 DeoR C terminal sensor domain MS6_A0976 PF08220 DeoR-like helix-turn-helix domain MS6_A0979 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A0980 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A0980 PF14785 Maltose transport system permease protein MalF P2 domain MS6_A0981 PF01547 Bacterial extracellular solute-binding protein MS6_A0983 PF08402 TOBE domain MS6_A0983 PF00005 ABC transporter MS6_A0984 PF13302 Acetyltransferase (GNAT) domain MS6_A0987 PF01906 Putative heavy-metal-binding MS6_A0988 PF00196 Bacterial regulatory proteins, luxR family MS6_A0990 PF00072 Response regulator receiver domain MS6_A0990 PF01584 CheW-like domain MS6_A0991 PF01047 MarR family MS6_A0992 PF00990 Diguanylate cyclase, GGDEF domain MS6_A0995 PF03707 Bacterial signalling protein N terminal repeat MS6_A0995 PF00563 EAL domain MS6_A0995 PF00990 Diguanylate cyclase, GGDEF domain MS6_A0999 PF03466 LysR substrate binding domain MS6_A0999 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A1000 PF00990 Diguanylate cyclase, GGDEF domain MS6_A1000 PF00563 EAL domain MS6_A1002 PF05726 Pirin C-terminal cupin domain MS6_A1002 PF02678 Pirin MS6_A1003 PF06865 Pyrimidine/purine nucleoside phosphorylase MS6_A1005 PF07690 Major Facilitator Superfamily MS6_A1006 PF17200 Single Cache domain 2 MS6_A1006 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A1006 PF00672 HAMP domain MS6_A1007 PF05362 Lon protease (S16) C-terminal proteolytic domain MS6_A1007 PF13654 AAA domain MS6_A1009 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MS6_A1009 PF00005 ABC transporter MS6_A1010 PF00497 Bacterial extracellular solute-binding proteins, family 3 MS6_A1011 PF17200 Single Cache domain 2 MS6_A1011 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A1011 PF00672 HAMP domain MS6_A1013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A1013 PF03466 LysR substrate binding domain MS6_A1015 PF02652 L-lactate permease MS6_A1016 PF01070 FMN-dependent dehydrogenase MS6_A1018 PF03618 Kinase/pyrophosphorylase MS6_A1019 PF02896 PEP-utilising enzyme, TIM barrel domain MS6_A1019 PF00391 PEP-utilising enzyme, mobile domain MS6_A1019 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MS6_A1020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A1020 PF08447 PAS fold MS6_A1021 PF01554 MatE MS6_A1022 PF00271 Helicase conserved C-terminal domain MS6_A1022 PF00270 DEAD/DEAH box helicase MS6_A1024 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A1024 PF03466 LysR substrate binding domain MS6_A1026 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MS6_A1028 PF00005 ABC transporter MS6_A1028 PF00664 ABC transporter transmembrane region MS6_A1030 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MS6_A1032 PF01810 LysE type translocator MS6_A1033 PF12833 Helix-turn-helix domain MS6_A1036 PF01557 Fumarylacetoacetate (FAA) hydrolase family MS6_A1037 PF01047 MarR family MS6_A1038 PF02566 OsmC-like protein MS6_A1039 PF13609 Gram-negative porin MS6_A1041 PF00892 EamA-like transporter family MS6_A1042 PF00462 Glutaredoxin MS6_A1043 PF07670 Nucleoside recognition MS6_A1044 PF07670 Nucleoside recognition MS6_A1045 PF03600 Citrate transporter MS6_A1047 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MS6_A1047 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MS6_A1048 PF00730 HhH-GPD superfamily base excision DNA repair protein MS6_A1048 PF06029 AlkA N-terminal domain MS6_A1049 PF07681 DoxX MS6_A1050 PF03466 LysR substrate binding domain MS6_A1050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A1054 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MS6_A1056 PF07148 Maltose operon periplasmic protein precursor (MalM) MS6_A1057 PF02264 LamB porin MS6_A1058 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MS6_A1058 PF00128 Alpha amylase, catalytic domain MS6_A1060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A1060 PF00672 HAMP domain MS6_A1060 PF12729 Four helix bundle sensory module for signal transduction MS6_A1064 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A1064 PF00672 HAMP domain MS6_A1066 PF00793 DAHP synthetase I family MS6_A1067 PF00005 ABC transporter MS6_A1068 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A1069 PF00497 Bacterial extracellular solute-binding proteins, family 3 MS6_A1070 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A1071 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MS6_A1071 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MS6_A1071 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MS6_A1071 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MS6_A1073 PF04225 Opacity-associated protein A LysM-like domain MS6_A1073 PF01551 Peptidase family M23 MS6_A1075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MS6_A1075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MS6_A1075 PF02378 Phosphotransferase system, EIIC MS6_A1076 PF01232 Mannitol dehydrogenase Rossmann domain MS6_A1076 PF08125 Mannitol dehydrogenase C-terminal domain MS6_A1077 PF05068 Mannitol repressor MS6_A1078 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MS6_A1084 PF13460 NAD(P)H-binding MS6_A1085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A1085 PF03466 LysR substrate binding domain MS6_A1086 PF02743 Cache domain MS6_A1086 PF00672 HAMP domain MS6_A1086 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A1087 PF00106 short chain dehydrogenase MS6_A1088 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MS6_A1088 PF03466 LysR substrate binding domain MS6_A1089 PF04013 Putative SAM-dependent RNA methyltransferase MS6_A1090 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MS6_A1092 PF13520 Amino acid permease MS6_A1093 PF01276 Orn/Lys/Arg decarboxylase, major domain MS6_A1093 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain MS6_A1093 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain MS6_A1097 PF00171 Aldehyde dehydrogenase family MS6_A1098 PF01037 Lrp/AsnC ligand binding domain MS6_A1099 PF00672 HAMP domain MS6_A1099 PF02743 Cache domain MS6_A1099 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A1101 PF00474 Sodium:solute symporter family MS6_A1103 PF00171 Aldehyde dehydrogenase family MS6_A1103 PF01619 Proline dehydrogenase MS6_A1103 PF14850 DNA-binding domain of Proline dehydrogenase MS6_A1103 PF18327 Proline utilization A proline dehydrogenase N-terminal domain MS6_A1104 PF12833 Helix-turn-helix domain MS6_A1107 PF03781 Sulfatase-modifying factor enzyme 1 MS6_A1108 PF00196 Bacterial regulatory proteins, luxR family MS6_A1108 PF00072 Response regulator receiver domain MS6_A1109 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MS6_A1109 PF01243 Pyridoxamine 5'-phosphate oxidase MS6_A1110 PF00529 HlyD membrane-fusion protein of T1SS MS6_A1113 PF00005 ABC transporter MS6_A1113 PF03412 Peptidase C39 family MS6_A1113 PF00664 ABC transporter transmembrane region MS6_A1115 PF00072 Response regulator receiver domain MS6_A1115 PF00486 Transcriptional regulatory protein, C terminal MS6_A1117 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A1117 PF00672 HAMP domain MS6_A1117 PF02743 Cache domain MS6_A1118 PF00072 Response regulator receiver domain MS6_A1118 PF01339 CheB methylesterase MS6_A1119 PF03975 CheD chemotactic sensory transduction MS6_A1120 PF01739 CheR methyltransferase, SAM binding domain MS6_A1120 PF03705 CheR methyltransferase, all-alpha domain MS6_A1121 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MS6_A1121 PF02203 Tar ligand binding domain homologue MS6_A1121 PF00672 HAMP domain MS6_A1122 PF01584 CheW-like domain MS6_A1123 PF01584 CheW-like domain MS6_A1124 PF09078 CheY binding MS6_A1124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A1124 PF02895 Signal transducing histidine kinase, homodimeric domain MS6_A1124 PF01584 CheW-like domain MS6_A1124 PF01627 Hpt domain MS6_A1125 PF00072 Response regulator receiver domain MS6_A1128 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A1129 PF12911 N-terminal TM domain of oligopeptide transport permease C MS6_A1129 PF00528 Binding-protein-dependent transport system inner membrane component MS6_A1130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MS6_A1130 PF00005 ABC transporter MS6_A1131 PF08019 Phosphoethanolamine transferase EptA/EptB MS6_A1131 PF00884 Sulfatase MS6_A1132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MS6_A1132 PF08521 Two-component sensor kinase N-terminal MS6_A1132 PF00512 His Kinase A (phospho-acceptor) domain MS6_A1133 PF00486 Transcriptional regulatory protein, C terminal MS6_A1133 PF00072 Response regulator receiver domain MS6_A1135 PF00106 short chain dehydrogenase MS6_A1137 PF00501 AMP-binding enzyme MS6_A1139 PF13718 GNAT acetyltransferase 2 MS6_A1139 PF05127 Helicase MS6_A1140 PF13416 Bacterial extracellular solute-binding protein MS6_A1141 PF08775 ParB family MS6_A1141 PF02195 ParB-like nuclease domain MS6_A1142 PF18607 ParA helix turn helix domain MS6_A1142 PF13614 AAA domain MS6_A1147 PF01709 Transcriptional regulator MS6_A1148 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MS6_A1148 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase