MS6_0002 SM00062 Bacterial periplasmic substrate-binding proteins MS6_0004 SM00382 ATPases associated with a variety of cellular activities MS6_0010 SM01228 MS6_0010 MS6_0013 SM00470 ParB-like nuclease domain MS6_0021 SM00382 ATPases associated with a variety of cellular activities MS6_0041 SM00382 ATPases associated with a variety of cellular activities MS6_0060 SM00342 helix_turn_helix, arabinose operon control protein MS6_0064 SM00341 Helicase and RNase D C-terminal MS6_0064 SM00487 DEAD-like helicases superfamily MS6_0064 SM00490 helicase superfamily c-terminal domain MS6_0064 SM00956 MS6_0064 MS6_0067 SM00382 ATPases associated with a variety of cellular activities MS6_0069 SM00382 ATPases associated with a variety of cellular activities MS6_0084 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_0084 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_0084 SM01049 MS6_0084 MS6_0090 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain MS6_0090 SM01232 MS6_0090 MS6_0115 SM00382 ATPases associated with a variety of cellular activities MS6_0128 SM00849 Metallo-beta-lactamase superfamily MS6_0128 SM01027 Beta-Casp domain MS6_0130 SM00986 Uracil DNA glycosylase superfamily MS6_0130 SM00987 UreE urease accessory protein, C-terminal domain MS6_0136 SM00411 bacterial (prokaryotic) histone like domain MS6_0138 SM01209 MS6_0138 MS6_0138 SM01210 MS6_0138 MS6_0139 SM00798 AICARFT/IMPCHase bienzyme MS6_0139 SM00851 MGS-like domain MS6_0141 SM00422 helix_turn_helix, mercury resistance MS6_0142 SM00862 Transcriptional regulatory protein, C terminal MS6_0146 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_0146 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_0146 SM01049 MS6_0146 MS6_0153 SM00354 helix_turn _helix lactose operon repressor MS6_0157 SM00878 Biotin carboxylase C-terminal domain MS6_0161 SM00479 MS6_0161 MS6_0164 SM00387 Histidine kinase-like ATPases MS6_0164 SM00388 His Kinase A (phosphoacceptor) domain MS6_0164 SM00448 cheY-homologous receiver domain MS6_0166 SM00487 DEAD-like helicases superfamily MS6_0166 SM00490 helicase superfamily c-terminal domain MS6_0168 SM00357 Cold shock protein domain MS6_0168 SM00382 ATPases associated with a variety of cellular activities MS6_0168 SM00959 Rho termination factor, N-terminal domain MS6_0173 SM00155 Phospholipase D. Active site motifs. MS6_0180 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. MS6_0180 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. MS6_0181 SM00649 Ribosomal protein L11/L12 MS6_0186 SM00663 RNA polymerase I subunit A N-terminus MS6_0198 SM00479 MS6_0198 MS6_0201 SM00257 Lysin motif MS6_0201 SM00646 MS6_0201 MS6_0202 SM00853 MutL C terminal dimerisation domain MS6_0202 SM01340 MS6_0202 MS6_0206 SM00244 prohibitin homologues MS6_0207 SM00244 prohibitin homologues MS6_0210 SM00320 WD40 repeats MS6_0218 SM00838 Elongation factor G C-terminus MS6_0218 SM00889 Elongation factor G, domain IV MS6_0227 SM00382 ATPases associated with a variety of cellular activities MS6_0228 SM01005 Alanine racemase, C-terminal domain MS6_0244 SM01018 B12 binding domain MS6_0250 SM00421 helix_turn_helix, Lux Regulon MS6_0252 SM00052 Putative diguanylate phosphodiesterase MS6_0252 SM00267 diguanylate cyclase MS6_0256 SM00965 Secretin and TonB N terminus short domain MS6_0258 SM00028 Tetratricopeptide repeats MS6_0259 SM00382 ATPases associated with a variety of cellular activities MS6_0273 SM00316 Ribosomal protein S1-like RNA-binding domain MS6_0296 SM00650 Ribosomal RNA adenine dimethylases MS6_0300 SM00271 DnaJ molecular chaperone homology domain MS6_0301 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_0301 SM01049 MS6_0301 MS6_0304 SM00478 endonuclease III MS6_0304 SM00525 MS6_0304 MS6_0307 SM00729 Elongator protein 3, MiaB family, Radical SAM MS6_0310 SM01152 MS6_0310 MS6_0314 SM00382 ATPases associated with a variety of cellular activities MS6_0316 SM00421 helix_turn_helix, Lux Regulon MS6_0317 SM00363 S4 RNA-binding domain MS6_0318 SM00732 Likely ribonuclease with RNase H fold. MS6_0323 SM00731 SprT homologues. MS6_0326 SM00861 Transketolase, pyrimidine binding domain MS6_0329 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MS6_0338 SM00420 helix_turn_helix, Deoxyribose operon repressor MS6_0338 SM01134 MS6_0338 MS6_0341 SM00563 Phosphate acyltransferases MS6_0343 SM00400 zinc finger MS6_0343 SM00493 MS6_0343 MS6_0343 SM00766 DNA primase DnaG DnaB-binding MS6_0349 SM01207 MS6_0349 MS6_0350 SM00905 Dihydroneopterin aldolase MS6_0359 SM00257 Lysin motif MS6_0361 SM00533 DNA-binding domain of DNA mismatch repair MUTS family MS6_0361 SM00534 ATPase domain of DNA mismatch repair MUTS family MS6_0366 SM00382 ATPases associated with a variety of cellular activities MS6_0368 SM00382 ATPases associated with a variety of cellular activities MS6_0370 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MS6_0377 SM00829 Enoylreductase MS6_0382 SM01091 Transporter associated domain MS6_0384 SM00382 ATPases associated with a variety of cellular activities MS6_0384 SM00962 SRP54-type protein, GTPase domain MS6_0384 SM00963 SRP54-type protein, helical bundle domain MS6_0389 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MS6_0390 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MS6_0400 SM00749 bacterial OsmY and nodulation domain MS6_0407 SM00947 Carbonic anhydrase MS6_0409 SM00382 ATPases associated with a variety of cellular activities MS6_0419 SM00487 DEAD-like helicases superfamily MS6_0419 SM00490 helicase superfamily c-terminal domain MS6_0419 SM00847 Helicase associated domain (HA2) Add an annotation MS6_0424 SM00938 Nitrogen regulatory protein P-II MS6_0428 SM00382 ATPases associated with a variety of cellular activities MS6_0430 SM01068 Putative carbohydrate binding domain MS6_0434 SM00382 ATPases associated with a variety of cellular activities MS6_0435 SM00382 ATPases associated with a variety of cellular activities MS6_0439 SM00091 PAS domain MS6_0439 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_0439 SM00387 Histidine kinase-like ATPases MS6_0439 SM00388 His Kinase A (phosphoacceptor) domain MS6_0439 SM00448 cheY-homologous receiver domain MS6_0449 SM00363 S4 RNA-binding domain MS6_0453 SM01103 MS6_0453 MS6_0455 SM00382 ATPases associated with a variety of cellular activities MS6_0460 SM00316 Ribosomal protein S1-like RNA-binding domain MS6_0460 SM00322 K homology RNA-binding domain MS6_0464 SM01387 MS6_0464 MS6_0465 SM00316 Ribosomal protein S1-like RNA-binding domain MS6_0465 SM00322 K homology RNA-binding domain MS6_0466 SM00028 Tetratricopeptide repeats MS6_0467 SM00347 helix_turn_helix multiple antibiotic resistance protein MS6_0471 SM00052 Putative diguanylate phosphodiesterase MS6_0471 SM00091 PAS domain MS6_0471 SM00267 diguanylate cyclase MS6_0477 SM00052 Putative diguanylate phosphodiesterase MS6_0477 SM00267 diguanylate cyclase MS6_0479 SM00487 DEAD-like helicases superfamily MS6_0479 SM00490 helicase superfamily c-terminal domain MS6_0482 SM00937 MS6_0482 MS6_0484 SM00382 ATPases associated with a variety of cellular activities MS6_0489 SM00927 DNA mismatch repair enzyme MutH MS6_0493 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MS6_0499 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MS6_0502 SM00904 Riboflavin kinase MS6_0513 SM00448 cheY-homologous receiver domain MS6_0513 SM00850 LytTr DNA-binding domain MS6_0516 SM00830 Chorismate mutase type II MS6_0518 SM00382 ATPases associated with a variety of cellular activities MS6_0522 SM00052 Putative diguanylate phosphodiesterase MS6_0522 SM00267 diguanylate cyclase MS6_0524 SM00830 Chorismate mutase type II MS6_0528 SM00363 S4 RNA-binding domain MS6_0530 SM00382 ATPases associated with a variety of cellular activities MS6_0530 SM01086 C-terminal, D2-small domain, of ClpB protein MS6_0536 SM00448 cheY-homologous receiver domain MS6_0536 SM00862 Transcriptional regulatory protein, C terminal MS6_0537 SM00091 PAS domain MS6_0537 SM00387 Histidine kinase-like ATPases MS6_0537 SM00388 His Kinase A (phosphoacceptor) domain MS6_0543 SM00382 ATPases associated with a variety of cellular activities MS6_0551 SM00116 Domain in cystathionine beta-synthase and other proteins. MS6_0554 SM01323 MS6_0554 MS6_0563 SM00271 DnaJ molecular chaperone homology domain MS6_0568 SM00562 MS6_0568 MS6_0570 SM00530 Helix-turn-helix XRE-family like proteins MS6_0574 SM00564 beta-propeller repeat MS6_0575 SM00382 ATPases associated with a variety of cellular activities MS6_0579 SM00116 Domain in cystathionine beta-synthase and other proteins. MS6_0579 SM01240 MS6_0579 MS6_0581 SM00495 Chitin-binding domain type 3 MS6_0591 SM00382 ATPases associated with a variety of cellular activities MS6_0594 SM00849 Metallo-beta-lactamase superfamily MS6_0600 SM00448 cheY-homologous receiver domain MS6_0601 SM00091 PAS domain MS6_0601 SM00387 Histidine kinase-like ATPases MS6_0606 SM00764 Citrate lyase ligase C-terminal domain MS6_0619 SM00487 DEAD-like helicases superfamily MS6_0619 SM00490 helicase superfamily c-terminal domain MS6_0621 SM00530 Helix-turn-helix XRE-family like proteins MS6_0627 SM00060 Fibronectin type 3 domain MS6_0628 SM00247 Beta/gamma crystallins MS6_0631 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_0632 SM00862 Transcriptional regulatory protein, C terminal MS6_0644 SM00342 helix_turn_helix, arabinose operon control protein MS6_0646 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_0646 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_0650 SM01276 MS6_0650 MS6_0662 SM00271 DnaJ molecular chaperone homology domain MS6_0671 SM00062 Bacterial periplasmic substrate-binding proteins MS6_0674 SM01211 MS6_0674 MS6_0690 SM00861 Transketolase, pyrimidine binding domain MS6_0695 SM00981 MS6_0695 MS6_0698 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs MS6_0698 SM00475 5'-3' exonuclease MS6_0700 SM00267 diguanylate cyclase MS6_0701 SM00028 Tetratricopeptide repeats MS6_0707 SM00382 ATPases associated with a variety of cellular activities MS6_0707 SM00930 MS6_0707 MS6_0709 SM00354 helix_turn _helix lactose operon repressor MS6_0711 SM00642 Alpha-amylase domain MS6_0714 SM00226 Low molecular weight phosphatase family MS6_0716 SM00984 UDP binding domain MS6_0727 SM00710 Parallel beta-helix repeats MS6_0740 SM00729 Elongator protein 3, MiaB family, Radical SAM MS6_0743 SM00936 Penicillin-binding protein 5, C-terminal domain MS6_0754 SM00116 Domain in cystathionine beta-synthase and other proteins. MS6_0754 SM01091 Transporter associated domain MS6_0757 SM00729 Elongator protein 3, MiaB family, Radical SAM MS6_0764 SM00771 ZipA, C-terminal domain (FtsZ-binding) MS6_0765 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MS6_0765 SM00292 breast cancer carboxy-terminal domain MS6_0765 SM00532 Ligase N family MS6_0768 SM00422 helix_turn_helix, mercury resistance MS6_0770 SM00244 prohibitin homologues MS6_0778 SM00862 Transcriptional regulatory protein, C terminal MS6_0779 SM00387 Histidine kinase-like ATPases MS6_0784 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. MS6_0784 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. MS6_0800 SM00479 MS6_0800 MS6_0805 SM00478 endonuclease III MS6_0805 SM00525 MS6_0805 MS6_0807 SM00900 MS6_0807 MS6_0813 SM00487 DEAD-like helicases superfamily MS6_0813 SM00490 helicase superfamily c-terminal domain MS6_0814 SM00382 ATPases associated with a variety of cellular activities MS6_0814 SM00448 cheY-homologous receiver domain MS6_0818 SM00852 Probable molybdopterin binding domain MS6_0822 SM00267 diguanylate cyclase MS6_0823 SM00116 Domain in cystathionine beta-synthase and other proteins. MS6_0832 SM00226 Low molecular weight phosphatase family MS6_0842 SM00448 cheY-homologous receiver domain MS6_0846 SM00382 ATPases associated with a variety of cellular activities MS6_0848 SM00493 MS6_0848 MS6_0854 SM00344 helix_turn_helix ASNC type MS6_0859 SM00062 Bacterial periplasmic substrate-binding proteins MS6_0859 SM00267 diguanylate cyclase MS6_0860 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MS6_0861 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MS6_0865 SM00495 Chitin-binding domain type 3 MS6_0865 SM00636 MS6_0865 MS6_0868 SM00342 helix_turn_helix, arabinose operon control protein MS6_0873 SM00448 cheY-homologous receiver domain MS6_0874 SM00448 cheY-homologous receiver domain MS6_0876 SM00387 Histidine kinase-like ATPases MS6_0876 SM00388 His Kinase A (phosphoacceptor) domain MS6_0877 SM00387 Histidine kinase-like ATPases MS6_0878 SM00052 Putative diguanylate phosphodiesterase MS6_0878 SM00448 cheY-homologous receiver domain MS6_0879 SM00448 cheY-homologous receiver domain MS6_0880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_0880 SM00387 Histidine kinase-like ATPases MS6_0885 SM00382 ATPases associated with a variety of cellular activities MS6_0886 SM00382 ATPases associated with a variety of cellular activities MS6_0894 SM00382 ATPases associated with a variety of cellular activities MS6_0895 SM00267 diguanylate cyclase MS6_0899 SM00382 ATPases associated with a variety of cellular activities MS6_0902 SM00729 Elongator protein 3, MiaB family, Radical SAM MS6_0902 SM00876 Biotin and Thiamin Synthesis associated domain MS6_0920 SM00528 Domain in histone-like proteins of HNS family MS6_0932 SM00357 Cold shock protein domain MS6_0934 SM00382 ATPases associated with a variety of cellular activities MS6_0934 SM01086 C-terminal, D2-small domain, of ClpB protein MS6_0946 SM00448 cheY-homologous receiver domain MS6_0947 SM00387 Histidine kinase-like ATPases MS6_0966 SM00481 DNA polymerase alpha chain like domain MS6_0968 SM00363 S4 RNA-binding domain MS6_0969 SM00382 ATPases associated with a variety of cellular activities MS6_0970 SM00382 ATPases associated with a variety of cellular activities MS6_0974 SM00267 diguanylate cyclase MS6_0977 SM00919 Malic enzyme, NAD binding domain MS6_0977 SM01274 MS6_0977 MS6_0982 SM00271 DnaJ molecular chaperone homology domain MS6_0982 SM00671 Sel1-like repeats. MS6_0988 SM00020 Trypsin-like serine protease MS6_0994 SM00345 helix_turn_helix gluconate operon transcriptional repressor MS6_0994 SM00866 MS6_0994 MS6_0997 SM00841 Elongation factor P, C-terminal MS6_0997 SM01185 MS6_0997 MS6_0999 SM00052 Putative diguanylate phosphodiesterase MS6_1000 SM00486 DNA polymerase type-B family MS6_1001 SM00421 helix_turn_helix, Lux Regulon MS6_1001 SM00448 cheY-homologous receiver domain MS6_1002 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MS6_1002 SM00465 GIY-YIG type nucleases (URI domain) MS6_1004 SM00267 diguanylate cyclase MS6_1008 SM00873 B3/4 domain MS6_1008 SM00874 tRNA synthetase B5 domain MS6_1008 SM00896 Ferredoxin-fold anticodon binding domain MS6_1009 SM00411 bacterial (prokaryotic) histone like domain MS6_1024 SM00855 Phosphoglycerate mutase family MS6_1027 SM00382 ATPases associated with a variety of cellular activities MS6_1030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_1030 SM01049 MS6_1030 MS6_1033 SM00852 Probable molybdopterin binding domain MS6_1039 SM00434 DNA Topoisomerase IV MS6_1040 SM00450 Rhodanese Homology Domain MS6_1041 SM00342 helix_turn_helix, arabinose operon control protein MS6_1051 SM00849 Metallo-beta-lactamase superfamily MS6_1057 SM00387 Histidine kinase-like ATPases MS6_1057 SM01049 MS6_1057 MS6_1058 SM00421 helix_turn_helix, Lux Regulon MS6_1058 SM00448 cheY-homologous receiver domain MS6_1059 SM00347 helix_turn_helix multiple antibiotic resistance protein MS6_1061 SM00495 Chitin-binding domain type 3 MS6_1067 SM00354 helix_turn _helix lactose operon repressor MS6_1070 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_1071 SM00479 MS6_1071 MS6_1072 SM00100 Cyclic nucleotide-monophosphate binding domain MS6_1072 SM00116 Domain in cystathionine beta-synthase and other proteins. MS6_1075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_1075 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MS6_1078 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1078 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_1088 SM00091 PAS domain MS6_1088 SM00382 ATPases associated with a variety of cellular activities MS6_1092 SM01005 Alanine racemase, C-terminal domain MS6_1093 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1093 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_1095 SM00387 Histidine kinase-like ATPases MS6_1096 SM00448 cheY-homologous receiver domain MS6_1099 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_1099 SM00387 Histidine kinase-like ATPases MS6_1099 SM00388 His Kinase A (phosphoacceptor) domain MS6_1100 SM00448 cheY-homologous receiver domain MS6_1100 SM00862 Transcriptional regulatory protein, C terminal MS6_1106 SM00382 ATPases associated with a variety of cellular activities MS6_1113 SM00345 helix_turn_helix gluconate operon transcriptional repressor MS6_1113 SM00895 MS6_1113 MS6_1126 SM00448 cheY-homologous receiver domain MS6_1126 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MS6_1127 SM00073 Histidine Phosphotransfer domain MS6_1127 SM00091 PAS domain MS6_1127 SM00387 Histidine kinase-like ATPases MS6_1127 SM00388 His Kinase A (phosphoacceptor) domain MS6_1127 SM00448 cheY-homologous receiver domain MS6_1129 SM00267 diguanylate cyclase MS6_1130 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase MS6_1134 SM00382 ATPases associated with a variety of cellular activities MS6_1137 SM00062 Bacterial periplasmic substrate-binding proteins MS6_1142 SM00028 Tetratricopeptide repeats MS6_1142 SM00267 diguanylate cyclase MS6_1145 SM00267 diguanylate cyclase MS6_1147 SM00267 diguanylate cyclase MS6_1151 SM00267 diguanylate cyclase MS6_1151 SM01079 MS6_1151 MS6_1152 SM00479 MS6_1152 MS6_1157 SM00382 ATPases associated with a variety of cellular activities MS6_1157 SM00487 DEAD-like helicases superfamily MS6_1157 SM00490 helicase superfamily c-terminal domain MS6_1157 SM00847 Helicase associated domain (HA2) Add an annotation MS6_1166 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1167 SM00448 cheY-homologous receiver domain MS6_1169 SM00073 Histidine Phosphotransfer domain MS6_1169 SM00260 Two component signalling adaptor domain MS6_1169 SM00387 Histidine kinase-like ATPases MS6_1169 SM01231 MS6_1169 MS6_1170 SM00448 cheY-homologous receiver domain MS6_1171 SM00138 Methyltransferase, chemotaxis proteins MS6_1173 SM00448 cheY-homologous receiver domain MS6_1174 SM00260 Two component signalling adaptor domain MS6_1175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1177 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1177 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_1178 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MS6_1178 SM00091 PAS domain MS6_1178 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1179 SM00487 DEAD-like helicases superfamily MS6_1179 SM00490 helicase superfamily c-terminal domain MS6_1184 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1184 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_1200 SM00382 ATPases associated with a variety of cellular activities MS6_1206 SM00100 Cyclic nucleotide-monophosphate binding domain MS6_1206 SM00419 helix_turn_helix, cAMP Regulatory protein MS6_1215 SM00897 FIST N domain MS6_1215 SM01204 MS6_1215 MS6_1216 SM00387 Histidine kinase-like ATPases MS6_1216 SM00388 His Kinase A (phosphoacceptor) domain MS6_1216 SM00448 cheY-homologous receiver domain MS6_1217 SM00382 ATPases associated with a variety of cellular activities MS6_1219 SM00382 ATPases associated with a variety of cellular activities MS6_1239 SM00530 Helix-turn-helix XRE-family like proteins MS6_1250 SM00530 Helix-turn-helix XRE-family like proteins MS6_1254 SM00530 Helix-turn-helix XRE-family like proteins MS6_1260 SM00530 Helix-turn-helix XRE-family like proteins MS6_1272 SM00382 ATPases associated with a variety of cellular activities MS6_1274 SM00981 MS6_1274 MS6_1282 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MS6_1282 SM00245 tail specific protease MS6_1283 SM00945 ProQ/FINO family MS6_1285 SM00382 ATPases associated with a variety of cellular activities MS6_1289 SM00316 Ribosomal protein S1-like RNA-binding domain MS6_1298 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MS6_1305 SM00382 ATPases associated with a variety of cellular activities MS6_1306 SM00387 Histidine kinase-like ATPases MS6_1306 SM00388 His Kinase A (phosphoacceptor) domain MS6_1307 SM00382 ATPases associated with a variety of cellular activities MS6_1307 SM00448 cheY-homologous receiver domain MS6_1310 SM00382 ATPases associated with a variety of cellular activities MS6_1312 SM00852 Probable molybdopterin binding domain MS6_1318 SM01144 MS6_1318 MS6_1320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1337 SM00382 ATPases associated with a variety of cellular activities MS6_1338 SM00420 helix_turn_helix, Deoxyribose operon repressor MS6_1338 SM01134 MS6_1338 MS6_1343 SM00354 helix_turn _helix lactose operon repressor MS6_1347 SM00849 Metallo-beta-lactamase superfamily MS6_1352 SM00382 ATPases associated with a variety of cellular activities MS6_1359 SM01022 MS6_1359 MS6_1367 SM00248 ankyrin repeats MS6_1368 SM01060 MS6_1368 MS6_1373 SM00822 MS6_1373 MS6_1374 SM00052 Putative diguanylate phosphodiesterase MS6_1375 SM00267 diguanylate cyclase MS6_1381 SM00267 diguanylate cyclase MS6_1384 SM00260 Two component signalling adaptor domain MS6_1384 SM00448 cheY-homologous receiver domain MS6_1386 SM00448 cheY-homologous receiver domain MS6_1387 SM00387 Histidine kinase-like ATPases MS6_1394 SM00028 Tetratricopeptide repeats MS6_1394 SM00386 HAT (Half-A-TPR) repeats MS6_1402 SM00112 Cadherin repeats. MS6_1411 SM00382 ATPases associated with a variety of cellular activities MS6_1416 SM00363 S4 RNA-binding domain MS6_1417 SM00487 DEAD-like helicases superfamily MS6_1417 SM00490 helicase superfamily c-terminal domain MS6_1419 SM00448 cheY-homologous receiver domain MS6_1419 SM00862 Transcriptional regulatory protein, C terminal MS6_1420 SM00387 Histidine kinase-like ATPases MS6_1422 SM00052 Putative diguanylate phosphodiesterase MS6_1424 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1424 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_1429 SM00020 Trypsin-like serine protease MS6_1431 SM00448 cheY-homologous receiver domain MS6_1432 SM00052 Putative diguanylate phosphodiesterase MS6_1432 SM00421 helix_turn_helix, Lux Regulon MS6_1432 SM00448 cheY-homologous receiver domain MS6_1433 SM00062 Bacterial periplasmic substrate-binding proteins MS6_1433 SM00073 Histidine Phosphotransfer domain MS6_1433 SM00387 Histidine kinase-like ATPases MS6_1433 SM00388 His Kinase A (phosphoacceptor) domain MS6_1433 SM00448 cheY-homologous receiver domain MS6_1433 SM00918 Ligated ion channel L-glutamate- and glycine-binding site MS6_1434 SM00116 Domain in cystathionine beta-synthase and other proteins. MS6_1439 SM00382 ATPases associated with a variety of cellular activities MS6_1446 SM00382 ATPases associated with a variety of cellular activities MS6_1451 SM00155 Phospholipase D. Active site motifs. MS6_1460 SM00382 ATPases associated with a variety of cellular activities MS6_1464 SM00382 ATPases associated with a variety of cellular activities MS6_1465 SM00382 ATPases associated with a variety of cellular activities MS6_1468 SM01131 MS6_1468 MS6_1489 SM00052 Putative diguanylate phosphodiesterase MS6_1489 SM00091 PAS domain MS6_1490 SM00729 Elongator protein 3, MiaB family, Radical SAM MS6_1492 SM00344 helix_turn_helix ASNC type MS6_1498 SM00448 cheY-homologous receiver domain MS6_1498 SM00862 Transcriptional regulatory protein, C terminal MS6_1500 SM00354 helix_turn _helix lactose operon repressor MS6_1508 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MS6_1508 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MS6_1508 SM00493 MS6_1508 MS6_1514 SM00316 Ribosomal protein S1-like RNA-binding domain MS6_1534 SM00487 DEAD-like helicases superfamily MS6_1534 SM00490 helicase superfamily c-terminal domain MS6_1538 SM00487 DEAD-like helicases superfamily MS6_1549 SM01130 MS6_1549 MS6_1585 SM00382 ATPases associated with a variety of cellular activities MS6_1592 SM00342 helix_turn_helix, arabinose operon control protein MS6_1596 SM00387 Histidine kinase-like ATPases MS6_1596 SM00388 His Kinase A (phosphoacceptor) domain MS6_1596 SM00448 cheY-homologous receiver domain MS6_1608 SM00382 ATPases associated with a variety of cellular activities MS6_1609 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MS6_1611 SM00840 MS6_1611 MS6_1618 SM00491 MS6_1618 MS6_1622 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1622 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_1626 SM00062 Bacterial periplasmic substrate-binding proteins MS6_1626 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. MS6_1627 SM00382 ATPases associated with a variety of cellular activities MS6_1631 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1635 SM00763 PrkA AAA domain MS6_1641 SM00382 ATPases associated with a variety of cellular activities MS6_1642 SM00849 Metallo-beta-lactamase superfamily MS6_1645 SM00382 ATPases associated with a variety of cellular activities MS6_1648 SM00487 DEAD-like helicases superfamily MS6_1648 SM00490 helicase superfamily c-terminal domain MS6_1648 SM00982 MS6_1648 MS6_1648 SM01058 CarD-like/TRCF domain MS6_1660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_1662 SM00345 helix_turn_helix gluconate operon transcriptional repressor MS6_1665 SM00843 MS6_1665 MS6_1666 SM00344 helix_turn_helix ASNC type MS6_1667 SM01002 Alanine dehydrogenase/PNT, C-terminal domain MS6_1667 SM01003 Alanine dehydrogenase/PNT, N-terminal domain MS6_1673 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family MS6_1674 SM00028 Tetratricopeptide repeats MS6_1676 SM00411 bacterial (prokaryotic) histone like domain MS6_1677 SM00316 Ribosomal protein S1-like RNA-binding domain MS6_1679 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MS6_1681 SM00411 bacterial (prokaryotic) histone like domain MS6_1682 SM00382 ATPases associated with a variety of cellular activities MS6_1682 SM00464 Found in ATP-dependent protease La (LON) MS6_1683 SM00382 ATPases associated with a variety of cellular activities MS6_1683 SM00994 ClpX C4-type zinc finger MS6_1683 SM01086 C-terminal, D2-small domain, of ClpB protein MS6_1687 SM00387 Histidine kinase-like ATPases MS6_1687 SM00388 His Kinase A (phosphoacceptor) domain MS6_1688 SM00382 ATPases associated with a variety of cellular activities MS6_1688 SM00448 cheY-homologous receiver domain MS6_1695 SM00052 Putative diguanylate phosphodiesterase MS6_1695 SM00267 diguanylate cyclase MS6_1698 SM00563 Phosphate acyltransferases MS6_1711 SM00495 Chitin-binding domain type 3 MS6_1711 SM00636 MS6_1711 MS6_1721 SM00978 MS6_1721 MS6_1723 SM00563 Phosphate acyltransferases MS6_1725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_1726 SM00530 Helix-turn-helix XRE-family like proteins MS6_1729 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MS6_1735 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MS6_1736 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MS6_1737 SM01144 MS6_1737 MS6_1740 SM00474 3'-5' exonuclease MS6_1746 SM00487 DEAD-like helicases superfamily MS6_1746 SM00491 MS6_1746 MS6_1751 SM00870 MS6_1751 MS6_1757 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MS6_1763 SM00260 Two component signalling adaptor domain MS6_1763 SM00448 cheY-homologous receiver domain MS6_1776 SM00825 Beta-ketoacyl synthase MS6_1778 SM00822 MS6_1778 MS6_1779 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MS6_1791 SM00363 S4 RNA-binding domain MS6_1792 SM00316 Ribosomal protein S1-like RNA-binding domain MS6_1797 SM00859 Semialdehyde dehydrogenase, NAD binding domain MS6_1799 SM00073 Histidine Phosphotransfer domain MS6_1804 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MS6_1804 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MS6_1804 SM00493 MS6_1804 MS6_1819 SM00382 ATPases associated with a variety of cellular activities MS6_1821 SM00260 Two component signalling adaptor domain MS6_1822 SM00260 Two component signalling adaptor domain MS6_1824 SM00448 cheY-homologous receiver domain MS6_1825 SM00073 Histidine Phosphotransfer domain MS6_1825 SM00260 Two component signalling adaptor domain MS6_1825 SM00387 Histidine kinase-like ATPases MS6_1825 SM01231 MS6_1825 MS6_1830 SM00382 ATPases associated with a variety of cellular activities MS6_1830 SM00962 SRP54-type protein, GTPase domain MS6_1832 SM00855 Phosphoglycerate mutase family MS6_1835 SM00836 DALR anticodon binding domain MS6_1835 SM01016 Arginyl tRNA synthetase N terminal dom MS6_1839 SM00899 MS6_1839 MS6_1840 SM00342 helix_turn_helix, arabinose operon control protein MS6_1842 SM00382 ATPases associated with a variety of cellular activities MS6_1844 SM00881 CoA binding domain MS6_1847 SM00861 Transketolase, pyrimidine binding domain MS6_1865 SM00859 Semialdehyde dehydrogenase, NAD binding domain MS6_1867 SM00825 Beta-ketoacyl synthase MS6_1875 SM00463 Small MutS-related domain MS6_1887 SM00382 ATPases associated with a variety of cellular activities MS6_1892 SM00382 ATPases associated with a variety of cellular activities MS6_1892 SM00448 cheY-homologous receiver domain MS6_1893 SM00091 PAS domain MS6_1893 SM00387 Histidine kinase-like ATPases MS6_1893 SM00388 His Kinase A (phosphoacceptor) domain MS6_1894 SM00382 ATPases associated with a variety of cellular activities MS6_1911 SM01130 MS6_1911 MS6_1914 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_1914 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_1917 SM00028 Tetratricopeptide repeats MS6_1929 SM00937 MS6_1929 MS6_1933 SM01400 MS6_1933 MS6_1940 SM00047 Lysozyme subfamily 2 MS6_1949 SM00138 Methyltransferase, chemotaxis proteins MS6_1950 SM00260 Two component signalling adaptor domain MS6_1950 SM00448 cheY-homologous receiver domain MS6_1951 SM00858 MS6_1951 MS6_1957 SM00823 Phosphopantetheine attachment site MS6_1965 SM01081 Putative carbohydrate binding domain MS6_1970 SM00463 Small MutS-related domain MS6_1971 SM00363 S4 RNA-binding domain MS6_1972 SM00267 diguanylate cyclase MS6_1980 SM00479 MS6_1980 MS6_1983 SM00849 Metallo-beta-lactamase superfamily MS6_1984 SM00257 Lysin motif MS6_1986 SM00938 Nitrogen regulatory protein P-II MS6_1989 SM00977 TilS substrate C-terminal domain MS6_1991 SM00481 DNA polymerase alpha chain like domain MS6_1997 SM00935 Outer membrane protein (OmpH-like) MS6_1999 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MS6_2008 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MS6_2019 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase MS6_2029 SM00267 diguanylate cyclase MS6_2037 SM00900 MS6_2037 MS6_2047 SM00464 Found in ATP-dependent protease La (LON) MS6_2054 SM00925 MltA specific insert domain MS6_2071 SM00354 helix_turn _helix lactose operon repressor MS6_2072 SM01038 Beta galactosidase small chain MS6_2076 SM00838 Elongation factor G C-terminus MS6_2076 SM00889 Elongation factor G, domain IV MS6_2077 SM00382 ATPases associated with a variety of cellular activities MS6_2083 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain MS6_2084 SM01133 MS6_2084 MS6_2093 SM00986 Uracil DNA glycosylase superfamily MS6_2093 SM00987 UreE urease accessory protein, C-terminal domain MS6_2094 SM00518 AP endonuclease family 2 MS6_2102 SM00448 cheY-homologous receiver domain MS6_2102 SM00862 Transcriptional regulatory protein, C terminal MS6_2103 SM00073 Histidine Phosphotransfer domain MS6_2103 SM00091 PAS domain MS6_2103 SM00387 Histidine kinase-like ATPases MS6_2103 SM00388 His Kinase A (phosphoacceptor) domain MS6_2103 SM00448 cheY-homologous receiver domain MS6_2104 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MS6_2104 SM00091 PAS domain MS6_2104 SM00267 diguanylate cyclase MS6_2105 SM00729 Elongator protein 3, MiaB family, Radical SAM MS6_2118 SM00382 ATPases associated with a variety of cellular activities MS6_2121 SM00851 MGS-like domain MS6_2121 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MS6_2122 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain MS6_2126 SM00957 SecA DEAD-like domain MS6_2126 SM00958 SecA preprotein cross-linking domain MS6_2129 SM00864 Tubulin/FtsZ family, GTPase domain MS6_2129 SM00865 Tubulin/FtsZ family, C-terminal domain MS6_2130 SM00842 Cell division protein FtsA MS6_2145 SM00345 helix_turn_helix gluconate operon transcriptional repressor MS6_2145 SM00895 MS6_2145 MS6_2151 SM00644 MS6_2151 MS6_2160 SM00434 DNA Topoisomerase IV MS6_2161 SM00387 Histidine kinase-like ATPases MS6_2161 SM00433 TopoisomeraseII MS6_2170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_2170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_2171 SM00880 MS6_2171 MS6_2171 SM01118 MS6_2171 MS6_2174 SM00287 Bacterial SH3 domain homologues MS6_2176 SM00382 ATPases associated with a variety of cellular activities MS6_2178 SM01192 MS6_2178 MS6_2178 SM01193 MS6_2178 MS6_2182 SM00954 Region found in RelA / SpoT proteins MS6_2184 SM00073 Histidine Phosphotransfer domain MS6_2184 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_2184 SM00387 Histidine kinase-like ATPases MS6_2184 SM00388 His Kinase A (phosphoacceptor) domain MS6_2184 SM00448 cheY-homologous receiver domain MS6_2186 SM00267 diguanylate cyclase MS6_2193 SM00358 Double-stranded RNA binding motif MS6_2193 SM00535 Ribonuclease III family MS6_2217 SM00014 Acid phosphatase homologues MS6_2219 SM00917 LeuA allosteric (dimerisation) domain MS6_2220 SM01329 MS6_2220 MS6_2224 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MS6_2233 SM00487 DEAD-like helicases superfamily MS6_2233 SM00490 helicase superfamily c-terminal domain MS6_2235 SM00670 Large family of predicted nucleotide-binding domains MS6_2240 SM00563 Phosphate acyltransferases MS6_2247 SM00382 ATPases associated with a variety of cellular activities MS6_2249 SM00116 Domain in cystathionine beta-synthase and other proteins. MS6_2253 SM00382 ATPases associated with a variety of cellular activities MS6_2259 SM00924 MgtE intracellular N domain MS6_2262 SM00382 ATPases associated with a variety of cellular activities MS6_2276 SM00382 ATPases associated with a variety of cellular activities MS6_2286 SM00487 DEAD-like helicases superfamily MS6_2286 SM00490 helicase superfamily c-terminal domain MS6_2293 SM00662 RNA polymerases D MS6_2294 SM00363 S4 RNA-binding domain MS6_2294 SM01390 MS6_2294 MS6_2307 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. MS6_2308 SM01374 MS6_2308 MS6_2312 SM00322 K homology RNA-binding domain MS6_2315 SM01382 MS6_2315 MS6_2315 SM01383 MS6_2315 MS6_2319 SM01403 MS6_2319 MS6_2320 SM00967 RNA 2'-O ribose methyltransferase substrate binding MS6_2321 SM00316 Ribosomal protein S1-like RNA-binding domain MS6_2321 SM00357 Cold shock protein domain MS6_2321 SM00955 MS6_2321 MS6_2323 SM00671 Sel1-like repeats. MS6_2324 SM00788 Adenylosuccinate synthetase MS6_2330 SM00382 ATPases associated with a variety of cellular activities MS6_2335 SM00100 Cyclic nucleotide-monophosphate binding domain MS6_2335 SM00419 helix_turn_helix, cAMP Regulatory protein MS6_2336 SM01150 MS6_2336 MS6_2341 SM00729 Elongator protein 3, MiaB family, Radical SAM MS6_2351 SM00965 Secretin and TonB N terminus short domain MS6_2364 SM00859 Semialdehyde dehydrogenase, NAD binding domain MS6_2368 SM00971 Serine acetyltransferase, N-terminal MS6_2371 SM00450 Rhodanese Homology Domain MS6_2377 SM00841 Elongation factor P, C-terminal MS6_2377 SM01185 MS6_2377 MS6_2381 SM00883 Chaperonin 10 Kd subunit MS6_2390 SM00382 ATPases associated with a variety of cellular activities MS6_2390 SM01086 C-terminal, D2-small domain, of ClpB protein MS6_2394 SM00354 helix_turn _helix lactose operon repressor MS6_2395 SM00487 DEAD-like helicases superfamily MS6_2395 SM00490 helicase superfamily c-terminal domain MS6_2398 SM00919 Malic enzyme, NAD binding domain MS6_2398 SM01274 MS6_2398 MS6_2408 SM00448 cheY-homologous receiver domain MS6_2408 SM00862 Transcriptional regulatory protein, C terminal MS6_2409 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_2409 SM00387 Histidine kinase-like ATPases MS6_2409 SM00388 His Kinase A (phosphoacceptor) domain MS6_2413 SM00267 diguanylate cyclase MS6_2418 SM00421 helix_turn_helix, Lux Regulon MS6_2418 SM00448 cheY-homologous receiver domain MS6_2419 SM01091 Transporter associated domain MS6_2423 SM00072 Guanylate kinase homologues. MS6_2424 SM01409 MS6_2424 MS6_2425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MS6_2425 SM00954 Region found in RelA / SpoT proteins MS6_2426 SM00487 DEAD-like helicases superfamily MS6_2426 SM00490 helicase superfamily c-terminal domain MS6_2428 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_2428 SM00387 Histidine kinase-like ATPases MS6_2428 SM00388 His Kinase A (phosphoacceptor) domain MS6_2429 SM00448 cheY-homologous receiver domain MS6_2429 SM00862 Transcriptional regulatory protein, C terminal MS6_2431 SM00316 Ribosomal protein S1-like RNA-binding domain MS6_2431 SM00732 Likely ribonuclease with RNase H fold. MS6_2448 SM00382 ATPases associated with a variety of cellular activities MS6_2451 SM00363 S4 RNA-binding domain MS6_2461 SM01230 MS6_2461 MS6_2463 SM00091 PAS domain MS6_2463 SM00387 Histidine kinase-like ATPases MS6_2463 SM00388 His Kinase A (phosphoacceptor) domain MS6_2464 SM00382 ATPases associated with a variety of cellular activities MS6_2464 SM00448 cheY-homologous receiver domain MS6_2465 SM00052 Putative diguanylate phosphodiesterase MS6_2465 SM00267 diguanylate cyclase MS6_2467 SM00360 RNA recognition motif MS6_2477 SM00382 ATPases associated with a variety of cellular activities MS6_2478 SM00382 ATPases associated with a variety of cellular activities MS6_2478 SM00962 SRP54-type protein, GTPase domain MS6_2478 SM00963 SRP54-type protein, helical bundle domain MS6_2492 SM01144 MS6_2492 MS6_2493 SM00052 Putative diguanylate phosphodiesterase MS6_2493 SM00267 diguanylate cyclase MS6_2493 SM00897 FIST N domain MS6_2493 SM01204 MS6_2493 MS6_2500 SM01219 MS6_2500 MS6_2507 SM00729 Elongator protein 3, MiaB family, Radical SAM MS6_2514 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs MS6_2514 SM00474 3'-5' exonuclease MS6_2514 SM00475 5'-3' exonuclease MS6_2514 SM00482 DNA polymerase A domain MS6_2517 SM01004 Delta-aminolevulinic acid dehydratase MS6_2520 SM00450 Rhodanese Homology Domain MS6_2522 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MS6_2522 SM00091 PAS domain MS6_2522 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_2526 SM00563 Phosphate acyltransferases MS6_2546 SM00052 Putative diguanylate phosphodiesterase MS6_2546 SM00091 PAS domain MS6_2546 SM00267 diguanylate cyclase MS6_2547 SM00344 helix_turn_helix ASNC type MS6_2552 SM00876 Biotin and Thiamin Synthesis associated domain MS6_2564 SM01001 AIR carboxylase MS6_2569 SM00257 Lysin motif MS6_2583 SM00563 Phosphate acyltransferases MS6_2584 SM00382 ATPases associated with a variety of cellular activities MS6_2590 SM00829 Enoylreductase MS6_2601 SM00387 Histidine kinase-like ATPases MS6_2601 SM00433 TopoisomeraseII MS6_2603 SM00480 DNA polymerase III beta subunit MS6_2604 SM00382 ATPases associated with a variety of cellular activities MS6_2604 SM00760 Bacterial dnaA protein helix-turn-helix domain MS6_A0001 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A0001 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0001 SM01049 MS6_A0001 MS6_A0003 SM00421 helix_turn_helix, Lux Regulon MS6_A0006 SM00642 Alpha-amylase domain MS6_A0017 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins MS6_A0017 SM00495 Chitin-binding domain type 3 MS6_A0017 SM00636 MS6_A0017 MS6_A0020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A0020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0024 SM00014 Acid phosphatase homologues MS6_A0034 SM00245 tail specific protease MS6_A0037 SM00267 diguanylate cyclase MS6_A0038 SM00028 Tetratricopeptide repeats MS6_A0042 SM00422 helix_turn_helix, mercury resistance MS6_A0044 SM00257 Lysin motif MS6_A0047 SM00487 DEAD-like helicases superfamily MS6_A0047 SM00490 helicase superfamily c-terminal domain MS6_A0053 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A0053 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0057 SM00382 ATPases associated with a variety of cellular activities MS6_A0058 SM00267 diguanylate cyclase MS6_A0065 SM00052 Putative diguanylate phosphodiesterase MS6_A0065 SM00267 diguanylate cyclase MS6_A0068 SM00422 helix_turn_helix, mercury resistance MS6_A0083 SM00450 Rhodanese Homology Domain MS6_A0084 SM00052 Putative diguanylate phosphodiesterase MS6_A0099 SM00382 ATPases associated with a variety of cellular activities MS6_A0099 SM01086 C-terminal, D2-small domain, of ClpB protein MS6_A0100 SM00382 ATPases associated with a variety of cellular activities MS6_A0110 SM00382 ATPases associated with a variety of cellular activities MS6_A0114 SM00354 helix_turn _helix lactose operon repressor MS6_A0117 SM00100 Cyclic nucleotide-monophosphate binding domain MS6_A0121 SM00495 Chitin-binding domain type 3 MS6_A0122 SM00091 PAS domain MS6_A0122 SM00387 Histidine kinase-like ATPases MS6_A0122 SM00388 His Kinase A (phosphoacceptor) domain MS6_A0123 SM00382 ATPases associated with a variety of cellular activities MS6_A0123 SM00448 cheY-homologous receiver domain MS6_A0146 SM00267 diguanylate cyclase MS6_A0147 SM00357 Cold shock protein domain MS6_A0151 SM00028 Tetratricopeptide repeats MS6_A0152 SM00327 von Willebrand factor (vWF) type A domain MS6_A0156 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A0156 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0163 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MS6_A0163 SM00382 ATPases associated with a variety of cellular activities MS6_A0165 SM00357 Cold shock protein domain MS6_A0170 SM00448 cheY-homologous receiver domain MS6_A0177 SM01240 MS6_A0177 MS6_A0182 SM01321 MS6_A0182 MS6_A0184 SM00487 DEAD-like helicases superfamily MS6_A0184 SM00490 helicase superfamily c-terminal domain MS6_A0189 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MS6_A0190 SM00387 Histidine kinase-like ATPases MS6_A0196 SM00267 diguanylate cyclase MS6_A0198 SM00458 Ricin-type beta-trefoil MS6_A0199 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A0199 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0202 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins MS6_A0210 SM00382 ATPases associated with a variety of cellular activities MS6_A0211 SM00342 helix_turn_helix, arabinose operon control protein MS6_A0217 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0217 SM00387 Histidine kinase-like ATPases MS6_A0217 SM00388 His Kinase A (phosphoacceptor) domain MS6_A0218 SM00448 cheY-homologous receiver domain MS6_A0218 SM00862 Transcriptional regulatory protein, C terminal MS6_A0221 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family MS6_A0223 SM01007 Class II Aldolase and Adducin N-terminal domain MS6_A0226 SM00420 helix_turn_helix, Deoxyribose operon repressor MS6_A0226 SM01134 MS6_A0226 MS6_A0229 SM00642 Alpha-amylase domain MS6_A0234 SM00448 cheY-homologous receiver domain MS6_A0234 SM00862 Transcriptional regulatory protein, C terminal MS6_A0235 SM00387 Histidine kinase-like ATPases MS6_A0235 SM00388 His Kinase A (phosphoacceptor) domain MS6_A0242 SM00422 helix_turn_helix, mercury resistance MS6_A0244 SM00342 helix_turn_helix, arabinose operon control protein MS6_A0246 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A0246 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0248 SM00936 Penicillin-binding protein 5, C-terminal domain MS6_A0253 SM01057 Eukaryotic-type carbonic anhydrase MS6_A0254 SM01321 MS6_A0254 MS6_A0260 SM00530 Helix-turn-helix XRE-family like proteins MS6_A0268 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MS6_A0295 SM00360 RNA recognition motif MS6_A0334 SM00360 RNA recognition motif MS6_A0375 SM00990 MS6_A0375 MS6_A0416 SM00530 Helix-turn-helix XRE-family like proteins MS6_A0545 SM01321 MS6_A0545 MS6_A0571 SM00354 helix_turn _helix lactose operon repressor MS6_A0574 SM00387 Histidine kinase-like ATPases MS6_A0574 SM00448 cheY-homologous receiver domain MS6_A0578 SM00833 Cobalamin synthesis protein cobW C-terminal domain MS6_A0581 SM00890 Domain of unknown function MS6_A0582 SM00387 Histidine kinase-like ATPases MS6_A0582 SM00388 His Kinase A (phosphoacceptor) domain MS6_A0583 SM00448 cheY-homologous receiver domain MS6_A0583 SM00862 Transcriptional regulatory protein, C terminal MS6_A0587 SM00052 Putative diguanylate phosphodiesterase MS6_A0590 SM00867 YceI-like domain MS6_A0591 SM00116 Domain in cystathionine beta-synthase and other proteins. MS6_A0599 SM00782 PhnA Zinc-Ribbon MS6_A0606 SM00062 Bacterial periplasmic substrate-binding proteins MS6_A0606 SM00267 diguanylate cyclase MS6_A0609 SM00267 diguanylate cyclase MS6_A0612 SM01002 Alanine dehydrogenase/PNT, C-terminal domain MS6_A0612 SM01003 Alanine dehydrogenase/PNT, N-terminal domain MS6_A0614 SM00387 Histidine kinase-like ATPases MS6_A0614 SM00388 His Kinase A (phosphoacceptor) domain MS6_A0615 SM00448 cheY-homologous receiver domain MS6_A0615 SM00862 Transcriptional regulatory protein, C terminal MS6_A0619 SM01321 MS6_A0619 MS6_A0624 SM00881 CoA binding domain MS6_A0639 SM00382 ATPases associated with a variety of cellular activities MS6_A0649 SM00345 helix_turn_helix gluconate operon transcriptional repressor MS6_A0649 SM00866 MS6_A0649 MS6_A0651 SM00382 ATPases associated with a variety of cellular activities MS6_A0667 SM00852 Probable molybdopterin binding domain MS6_A0670 SM00450 Rhodanese Homology Domain MS6_A0673 SM00861 Transketolase, pyrimidine binding domain MS6_A0692 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MS6_A0694 SM00450 Rhodanese Homology Domain MS6_A0696 SM00563 Phosphate acyltransferases MS6_A0704 SM00354 helix_turn _helix lactose operon repressor MS6_A0705 SM00640 Glycosyl hydrolases family 32 MS6_A0708 SM00091 PAS domain MS6_A0708 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A0712 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A0712 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0719 SM00354 helix_turn _helix lactose operon repressor MS6_A0720 SM00421 helix_turn_helix, Lux Regulon MS6_A0720 SM00448 cheY-homologous receiver domain MS6_A0721 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0721 SM00387 Histidine kinase-like ATPases MS6_A0724 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MS6_A0728 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MS6_A0729 SM00421 helix_turn_helix, Lux Regulon MS6_A0729 SM00448 cheY-homologous receiver domain MS6_A0730 SM00387 Histidine kinase-like ATPases MS6_A0734 SM00382 ATPases associated with a variety of cellular activities MS6_A0738 SM00822 MS6_A0738 MS6_A0743 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MS6_A0743 SM00267 diguanylate cyclase MS6_A0745 SM00495 Chitin-binding domain type 3 MS6_A0745 SM00636 MS6_A0745 MS6_A0749 SM00448 cheY-homologous receiver domain MS6_A0750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0750 SM00387 Histidine kinase-like ATPases MS6_A0750 SM00388 His Kinase A (phosphoacceptor) domain MS6_A0755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0755 SM00387 Histidine kinase-like ATPases MS6_A0755 SM00388 His Kinase A (phosphoacceptor) domain MS6_A0755 SM00448 cheY-homologous receiver domain MS6_A0757 SM00851 MGS-like domain MS6_A0765 SM00387 Histidine kinase-like ATPases MS6_A0766 SM00989 MS6_A0766 MS6_A0770 SM00382 ATPases associated with a variety of cellular activities MS6_A0781 SM00387 Histidine kinase-like ATPases MS6_A0781 SM00388 His Kinase A (phosphoacceptor) domain MS6_A0781 SM00448 cheY-homologous receiver domain MS6_A0805 SM00062 Bacterial periplasmic substrate-binding proteins MS6_A0805 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. MS6_A0806 SM00382 ATPases associated with a variety of cellular activities MS6_A0807 SM00327 von Willebrand factor (vWF) type A domain MS6_A0808 SM00382 ATPases associated with a variety of cellular activities MS6_A0813 SM00487 DEAD-like helicases superfamily MS6_A0813 SM00490 helicase superfamily c-terminal domain MS6_A0817 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A0817 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0821 SM00796 Allophanate hydrolase subunit 1 MS6_A0822 SM00797 Allophanate hydrolase subunit 2 MS6_A0824 SM00984 UDP binding domain MS6_A0827 SM00382 ATPases associated with a variety of cellular activities MS6_A0830 SM00052 Putative diguanylate phosphodiesterase MS6_A0830 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MS6_A0830 SM00267 diguanylate cyclase MS6_A0832 SM00271 DnaJ molecular chaperone homology domain MS6_A0839 SM00857 Resolvase, N terminal domain MS6_A0846 SM00020 Trypsin-like serine protease MS6_A0847 SM00487 DEAD-like helicases superfamily MS6_A0847 SM00490 helicase superfamily c-terminal domain MS6_A0848 SM00357 Cold shock protein domain MS6_A0848 SM00955 MS6_A0848 MS6_A0860 SM00924 MgtE intracellular N domain MS6_A0861 SM00883 Chaperonin 10 Kd subunit MS6_A0877 SM01266 MS6_A0877 MS6_A0878 SM01091 Transporter associated domain MS6_A0882 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MS6_A0886 SM00267 diguanylate cyclase MS6_A0888 SM00448 cheY-homologous receiver domain MS6_A0888 SM00850 LytTr DNA-binding domain MS6_A0889 SM00387 Histidine kinase-like ATPases MS6_A0893 SM00382 ATPases associated with a variety of cellular activities MS6_A0898 SM00642 Alpha-amylase domain MS6_A0902 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MS6_A0902 SM00091 PAS domain MS6_A0902 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A0925 SM00829 Enoylreductase MS6_A0933 SM00481 DNA polymerase alpha chain like domain MS6_A0934 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MS6_A0937 SM01350 MS6_A0937 MS6_A0939 SM00849 Metallo-beta-lactamase superfamily MS6_A0945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A0945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0948 SM00729 Elongator protein 3, MiaB family, Radical SAM MS6_A0954 SM00382 ATPases associated with a variety of cellular activities MS6_A0960 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A0960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A0964 SM00342 helix_turn_helix, arabinose operon control protein MS6_A0969 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MS6_A0970 SM00357 Cold shock protein domain MS6_A0973 SM00342 helix_turn_helix, arabinose operon control protein MS6_A0975 SM00091 PAS domain MS6_A0975 SM00267 diguanylate cyclase MS6_A0976 SM00420 helix_turn_helix, Deoxyribose operon repressor MS6_A0976 SM01134 MS6_A0976 MS6_A0983 SM00382 ATPases associated with a variety of cellular activities MS6_A0986 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. MS6_A0988 SM00421 helix_turn_helix, Lux Regulon MS6_A0990 SM00260 Two component signalling adaptor domain MS6_A0990 SM00448 cheY-homologous receiver domain MS6_A0991 SM00347 helix_turn_helix multiple antibiotic resistance protein MS6_A0992 SM00267 diguanylate cyclase MS6_A0995 SM00267 diguanylate cyclase MS6_A0995 SM01079 MS6_A0995 MS6_A1000 SM00267 diguanylate cyclase MS6_A1006 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A1006 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A1009 SM00382 ATPases associated with a variety of cellular activities MS6_A1010 SM00062 Bacterial periplasmic substrate-binding proteins MS6_A1011 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A1020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A1022 SM00487 DEAD-like helicases superfamily MS6_A1022 SM00490 helicase superfamily c-terminal domain MS6_A1028 SM00382 ATPases associated with a variety of cellular activities MS6_A1033 SM00342 helix_turn_helix, arabinose operon control protein MS6_A1037 SM00347 helix_turn_helix multiple antibiotic resistance protein MS6_A1048 SM00342 helix_turn_helix, arabinose operon control protein MS6_A1048 SM01009 AlkA N-terminal domain MS6_A1052 SM01154 MS6_A1052 MS6_A1055 SM00671 Sel1-like repeats. MS6_A1058 SM00642 Alpha-amylase domain MS6_A1060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A1060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A1064 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A1064 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A1067 SM00382 ATPases associated with a variety of cellular activities MS6_A1069 SM00062 Bacterial periplasmic substrate-binding proteins MS6_A1079 SM00849 Metallo-beta-lactamase superfamily MS6_A1083 SM00450 Rhodanese Homology Domain MS6_A1086 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A1086 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A1098 SM00344 helix_turn_helix ASNC type MS6_A1099 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A1099 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A1104 SM00342 helix_turn_helix, arabinose operon control protein MS6_A1108 SM00421 helix_turn_helix, Lux Regulon MS6_A1112 SM00052 Putative diguanylate phosphodiesterase MS6_A1112 SM00267 diguanylate cyclase MS6_A1113 SM00382 ATPases associated with a variety of cellular activities MS6_A1115 SM00331 Sigma factor PP2C-like phosphatases MS6_A1115 SM00448 cheY-homologous receiver domain MS6_A1117 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A1118 SM00448 cheY-homologous receiver domain MS6_A1120 SM00138 Methyltransferase, chemotaxis proteins MS6_A1121 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MS6_A1121 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MS6_A1122 SM00260 Two component signalling adaptor domain MS6_A1123 SM00260 Two component signalling adaptor domain MS6_A1124 SM00073 Histidine Phosphotransfer domain MS6_A1124 SM00260 Two component signalling adaptor domain MS6_A1124 SM00387 Histidine kinase-like ATPases MS6_A1124 SM01231 MS6_A1124 MS6_A1125 SM00448 cheY-homologous receiver domain MS6_A1130 SM00382 ATPases associated with a variety of cellular activities MS6_A1132 SM00387 Histidine kinase-like ATPases MS6_A1132 SM00388 His Kinase A (phosphoacceptor) domain MS6_A1133 SM00448 cheY-homologous receiver domain MS6_A1133 SM00862 Transcriptional regulatory protein, C terminal MS6_A1135 SM00822 MS6_A1135 MS6_A1136 SM01236 MS6_A1136 MS6_A1141 SM00470 ParB-like nuclease domain