locus-tag class description IR04_00025 PF01709 Transcriptional regulator IR04_00030 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IR04_00030 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IR04_00035 PF17200 Single Cache domain 2 IR04_00035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_00035 PF00672 HAMP domain IR04_00040 PF10928 Protein of unknown function (DUF2810) IR04_00045 PF17874 MalT-like TPR region IR04_00045 PF00196 Bacterial regulatory proteins, luxR family IR04_00050 PF00343 Carbohydrate phosphorylase IR04_00055 PF02446 4-alpha-glucanotransferase IR04_00060 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IR04_00060 PF02806 Alpha amylase, C-terminal all-beta domain IR04_00060 PF00128 Alpha amylase, catalytic domain IR04_00065 PF05638 Type VI secretion system effector, Hcp IR04_00070 PF04717 Type VI secretion system, phage-baseplate injector IR04_00070 PF16671 Actin cross-linking domain IR04_00095 PF01757 Acyltransferase family IR04_00095 PF01168 Alanine racemase, N-terminal domain IR04_00095 PF00842 Alanine racemase, C-terminal domain IR04_00105 PF00939 Sodium:sulfate symporter transmembrane region IR04_00110 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IR04_00115 PF08329 Chitinase A, N-terminal domain IR04_00115 PF00704 Glycosyl hydrolases family 18 IR04_00135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_00135 PF00672 HAMP domain IR04_00135 PF02743 Cache domain IR04_00155 PF01569 PAP2 superfamily IR04_00160 PF00375 Sodium:dicarboxylate symporter family IR04_00170 PF02630 SCO1/SenC IR04_00185 PF03616 Sodium/glutamate symporter IR04_00190 PF07238 PilZ domain IR04_00190 PF12945 Flagellar protein YcgR IR04_00205 PF00529 HlyD membrane-fusion protein of T1SS IR04_00205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IR04_00210 PF11742 Protein of unknown function (DUF3302) IR04_00215 PF00990 Diguanylate cyclase, GGDEF domain IR04_00230 PF01048 Phosphorylase superfamily IR04_00235 PF08349 Protein of unknown function (DUF1722) IR04_00240 PF13411 MerR HTH family regulatory protein IR04_00245 PF03441 FAD binding domain of DNA photolyase IR04_00245 PF00875 DNA photolyase IR04_00250 PF03734 L,D-transpeptidase catalytic domain IR04_00250 PF01476 LysM domain IR04_00250 PF17969 L,D-transpeptidase C-terminal domain IR04_00265 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IR04_00265 PF00326 Prolyl oligopeptidase family IR04_00270 PF07715 TonB-dependent Receptor Plug Domain IR04_00270 PF00593 TonB dependent receptor IR04_00290 PF12729 Four helix bundle sensory module for signal transduction IR04_00290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_00290 PF00672 HAMP domain IR04_00295 PF12849 PBP superfamily domain IR04_00300 PF00528 Binding-protein-dependent transport system inner membrane component IR04_00305 PF00528 Binding-protein-dependent transport system inner membrane component IR04_00310 PF00005 ABC transporter IR04_00315 PF00563 EAL domain IR04_00315 PF00990 Diguanylate cyclase, GGDEF domain IR04_00315 PF03707 Bacterial signalling protein N terminal repeat IR04_00330 PF01740 STAS domain IR04_00330 PF00916 Sulfate permease family IR04_00340 PF01551 Peptidase family M23 IR04_00340 PF01476 LysM domain IR04_00340 PF08525 Opacity-associated protein A N-terminal motif IR04_00345 PF00990 Diguanylate cyclase, GGDEF domain IR04_00345 PF03707 Bacterial signalling protein N terminal repeat IR04_00345 PF13188 PAS domain IR04_00345 PF00563 EAL domain IR04_00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_00350 PF03466 LysR substrate binding domain IR04_00355 PF07690 Major Facilitator Superfamily IR04_00360 PF00376 MerR family regulatory protein IR04_00360 PF09278 MerR, DNA binding IR04_00380 PF00375 Sodium:dicarboxylate symporter family IR04_00390 PF02001 Protein of unknown function DUF134 IR04_00415 PF02868 Thermolysin metallopeptidase, alpha-helical domain IR04_00415 PF01483 Proprotein convertase P-domain IR04_00415 PF01447 Thermolysin metallopeptidase, catalytic domain IR04_00415 PF07504 Fungalysin/Thermolysin Propeptide Motif IR04_00425 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IR04_00425 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IR04_00430 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IR04_00430 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IR04_00435 PF00581 Rhodanese-like domain IR04_00440 PF00563 EAL domain IR04_00440 PF00196 Bacterial regulatory proteins, luxR family IR04_00445 PF13419 Haloacid dehalogenase-like hydrolase IR04_00450 PF01740 STAS domain IR04_00450 PF00916 Sulfate permease family IR04_00455 PF00849 RNA pseudouridylate synthase IR04_00515 PF00004 ATPase family associated with various cellular activities (AAA) IR04_00515 PF07724 AAA domain (Cdc48 subfamily) IR04_00515 PF17871 AAA lid domain IR04_00515 PF10431 C-terminal, D2-small domain, of ClpB protein IR04_00545 PF16671 Actin cross-linking domain IR04_00545 PF04717 Type VI secretion system, phage-baseplate injector IR04_00560 PF05025 RbsD / FucU transport protein family IR04_00565 PF00005 ABC transporter IR04_00570 PF02653 Branched-chain amino acid transport system / permease component IR04_00575 PF13407 Periplasmic binding protein domain IR04_00580 PF00294 pfkB family carbohydrate kinase IR04_00585 PF00356 Bacterial regulatory proteins, lacI family IR04_00590 PF04973 Nicotinamide mononucleotide transporter IR04_00595 PF04973 Nicotinamide mononucleotide transporter IR04_00600 PF01048 Phosphorylase superfamily IR04_00610 PF03009 Glycerophosphoryl diester phosphodiesterase family IR04_00615 PF07690 Major Facilitator Superfamily IR04_00630 PF00512 His Kinase A (phospho-acceptor) domain IR04_00630 PF02743 Cache domain IR04_00630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_00635 PF00072 Response regulator receiver domain IR04_00635 PF00158 Sigma-54 interaction domain IR04_00635 PF02954 Bacterial regulatory protein, Fis family IR04_00655 PF01266 FAD dependent oxidoreductase IR04_00660 PF00041 Fibronectin type III domain IR04_00660 PF12561 ToxR activated gene A lipoprotein domain IR04_00665 PF01327 Polypeptide deformylase IR04_00675 PF03334 Na+/H+ antiporter subunit IR04_00680 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) IR04_00700 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter IR04_00700 PF00361 Proton-conducting membrane transporter IR04_00700 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IR04_00700 PF13244 Domain of unknown function (DUF4040) IR04_00710 PF00582 Universal stress protein family IR04_00715 PF03222 Tryptophan/tyrosine permease family IR04_00720 PF01212 Beta-eliminating lyase IR04_00725 PF12843 Putative quorum-sensing-regulated virulence factor IR04_00740 PF08448 PAS fold IR04_00740 PF00563 EAL domain IR04_00740 PF00990 Diguanylate cyclase, GGDEF domain IR04_00745 PF00313 'Cold-shock' DNA-binding domain IR04_00760 PF13519 von Willebrand factor type A domain IR04_00760 PF07584 Aerotolerance regulator N-terminal IR04_00775 PF01882 Protein of unknown function DUF58 IR04_00780 PF17863 AAA lid domain IR04_00780 PF07726 ATPase family associated with various cellular activities (AAA) IR04_00785 PF02743 Cache domain IR04_00785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_00785 PF00672 HAMP domain IR04_00800 PF01773 Na+ dependent nucleoside transporter N-terminus IR04_00800 PF07670 Nucleoside recognition IR04_00800 PF07662 Na+ dependent nucleoside transporter C-terminus IR04_00805 PF07687 Peptidase dimerisation domain IR04_00805 PF01546 Peptidase family M20/M25/M40 IR04_00815 PF00158 Sigma-54 interaction domain IR04_00815 PF01590 GAF domain IR04_00820 PF00175 Oxidoreductase NAD-binding domain IR04_00820 PF00970 Oxidoreductase FAD-binding domain IR04_00820 PF00042 Globin IR04_00825 PF00313 'Cold-shock' DNA-binding domain IR04_00830 PF03889 Alternative ribosome-rescue factor A IR04_00855 PF03853 YjeF-related protein N-terminus IR04_00855 PF01256 Carbohydrate kinase IR04_00860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IR04_00860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IR04_00870 PF07885 Ion channel IR04_00880 PF00478 IMP dehydrogenase / GMP reductase domain IR04_00885 PF00145 C-5 cytosine-specific DNA methylase IR04_00905 PF01797 Transposase IS200 like IR04_00910 PF00270 DEAD/DEAH box helicase IR04_00910 PF00271 Helicase conserved C-terminal domain IR04_00915 PF03605 Anaerobic c4-dicarboxylate membrane transporter IR04_00920 PF02540 NAD synthase IR04_00925 PF01467 Cytidylyltransferase-like IR04_00930 PF11849 Domain of unknown function (DUF3369) IR04_00935 PF00497 Bacterial extracellular solute-binding proteins, family 3 IR04_00935 PF00512 His Kinase A (phospho-acceptor) domain IR04_00935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_00945 PF03553 Na+/H+ antiporter family IR04_00950 PF07690 Major Facilitator Superfamily IR04_00960 PF08448 PAS fold IR04_00960 PF00990 Diguanylate cyclase, GGDEF domain IR04_00965 PF00657 GDSL-like Lipase/Acylhydrolase IR04_00970 PF12563 Hemolytic toxin N terminal IR04_00970 PF07968 Leukocidin/Hemolysin toxin family IR04_00970 PF16458 Beta-prism lectin IR04_00975 PF12729 Four helix bundle sensory module for signal transduction IR04_00975 PF00672 HAMP domain IR04_00975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_00980 PF00561 alpha/beta hydrolase fold IR04_00985 PF03280 Proteobacterial lipase chaperone protein IR04_00990 PF05547 Immune inhibitor A peptidase M6 IR04_00990 PF00801 PKD domain IR04_01010 PF01032 FecCD transport family IR04_01015 PF01032 FecCD transport family IR04_01020 PF00005 ABC transporter IR04_01025 PF12833 Helix-turn-helix domain IR04_01030 PF00593 TonB dependent receptor IR04_01030 PF07715 TonB-dependent Receptor Plug Domain IR04_01040 PF00871 Acetokinase family IR04_01055 PF00672 HAMP domain IR04_01055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_01055 PF00512 His Kinase A (phospho-acceptor) domain IR04_01060 PF00486 Transcriptional regulatory protein, C terminal IR04_01060 PF00072 Response regulator receiver domain IR04_01075 PF01261 Xylose isomerase-like TIM barrel IR04_01080 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IR04_01090 PF00596 Class II Aldolase and Adducin N-terminal domain IR04_01095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IR04_01100 PF03611 PTS system sugar-specific permease component IR04_01105 PF00455 DeoR C terminal sensor domain IR04_01105 PF08220 DeoR-like helix-turn-helix domain IR04_01115 PF01292 Prokaryotic cytochrome b561 IR04_01125 PF00132 Bacterial transferase hexapeptide (six repeats) IR04_01145 PF00072 Response regulator receiver domain IR04_01145 PF00486 Transcriptional regulatory protein, C terminal IR04_01150 PF14827 Double sensory domain of two-component sensor kinase IR04_01150 PF13426 PAS domain IR04_01150 PF00512 His Kinase A (phospho-acceptor) domain IR04_01150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_01150 PF00672 HAMP domain IR04_01195 PF07690 Major Facilitator Superfamily IR04_01200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_01200 PF00672 HAMP domain IR04_01200 PF02743 Cache domain IR04_01210 PF00768 D-alanyl-D-alanine carboxypeptidase IR04_01210 PF07943 Penicillin-binding protein 5, C-terminal domain IR04_01225 PF00194 Eukaryotic-type carbonic anhydrase IR04_01230 PF01797 Transposase IS200 like IR04_01235 PF02347 Glycine cleavage system P-protein IR04_01240 PF01597 Glycine cleavage H-protein IR04_01245 PF00464 Serine hydroxymethyltransferase IR04_01255 PF01571 Aminomethyltransferase folate-binding domain IR04_01255 PF08669 Glycine cleavage T-protein C-terminal barrel domain IR04_01265 PF01609 Transposase DDE domain IR04_01265 PF05598 Transposase domain (DUF772) IR04_01290 PF03129 Anticodon binding domain IR04_01290 PF02824 TGS domain IR04_01290 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IR04_01290 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IR04_01295 PF00707 Translation initiation factor IF-3, C-terminal domain IR04_01295 PF05198 Translation initiation factor IF-3, N-terminal domain IR04_01300 PF01632 Ribosomal protein L35 IR04_01305 PF00453 Ribosomal protein L20 IR04_01310 PF00589 Phage integrase family IR04_01310 PF13495 Phage integrase, N-terminal SAM-like domain IR04_01335 PF00132 Bacterial transferase hexapeptide (six repeats) IR04_01380 PF13286 Phosphohydrolase-associated domain IR04_01380 PF01966 HD domain IR04_01405 PF00293 NUDIX domain IR04_01410 PF13302 Acetyltransferase (GNAT) domain IR04_01415 PF08212 Lipocalin-like domain IR04_01440 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ IR04_01450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IR04_01505 PF02016 LD-carboxypeptidase N-terminal domain IR04_01505 PF17676 LD-carboxypeptidase C-terminal domain IR04_01520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IR04_01550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IR04_01565 PF08212 Lipocalin-like domain IR04_01580 PF04229 GrpB protein IR04_01585 PF01810 LysE type translocator IR04_01615 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH IR04_01670 PF00665 Integrase core domain IR04_01675 PF01527 Transposase IR04_01755 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB IR04_01760 PF01381 Helix-turn-helix IR04_01775 PF17676 LD-carboxypeptidase C-terminal domain IR04_01775 PF02016 LD-carboxypeptidase N-terminal domain IR04_01795 PF08212 Lipocalin-like domain IR04_01800 PF05016 ParE toxin of type II toxin-antitoxin system, parDE IR04_01820 PF01555 DNA methylase IR04_01860 PF12833 Helix-turn-helix domain IR04_01860 PF01965 DJ-1/PfpI family IR04_01890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IR04_01905 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system IR04_01910 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA IR04_01925 PF05598 Transposase domain (DUF772) IR04_01925 PF01609 Transposase DDE domain IR04_01945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IR04_01955 PF05016 ParE toxin of type II toxin-antitoxin system, parDE IR04_02015 PF07859 alpha/beta hydrolase fold IR04_02030 PF01797 Transposase IS200 like IR04_02090 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IR04_02095 PF01527 Transposase IR04_02100 PF00665 Integrase core domain IR04_02115 PF13597 Anaerobic ribonucleoside-triphosphate reductase IR04_02115 PF03477 ATP cone domain IR04_02125 PF00155 Aminotransferase class I and II IR04_02130 PF08443 RimK-like ATP-grasp domain IR04_02130 PF18030 RimK PreATP-grasp domain IR04_02140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IR04_02140 PF02378 Phosphotransferase system, EIIC IR04_02145 PF00294 pfkB family carbohydrate kinase IR04_02150 PF00381 PTS HPr component phosphorylation site IR04_02150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IR04_02155 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IR04_02155 PF00356 Bacterial regulatory proteins, lacI family IR04_02160 PF12320 Type 5 capsule protein repressor C-terminal domain IR04_02160 PF00149 Calcineurin-like phosphoesterase IR04_02165 PF13476 AAA domain IR04_02170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_02170 PF00072 Response regulator receiver domain IR04_02175 PF00155 Aminotransferase class I and II IR04_02185 PF00654 Voltage gated chloride channel IR04_02190 PF02492 CobW/HypB/UreG, nucleotide-binding domain IR04_02190 PF07683 Cobalamin synthesis protein cobW C-terminal domain IR04_02195 PF01926 50S ribosome-binding GTPase IR04_02200 PF02705 K+ potassium transporter IR04_02205 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IR04_02205 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg IR04_02205 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase IR04_02205 PF10371 Domain of unknown function IR04_02205 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II IR04_02210 PF02702 Osmosensitive K+ channel His kinase sensor domain IR04_02210 PF13493 Domain of unknown function (DUF4118) IR04_02210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_02210 PF00512 His Kinase A (phospho-acceptor) domain IR04_02215 PF00486 Transcriptional regulatory protein, C terminal IR04_02215 PF00072 Response regulator receiver domain IR04_02220 PF02416 mttA/Hcf106 family IR04_02225 PF09335 SNARE associated Golgi protein IR04_02235 PF00563 EAL domain IR04_02235 PF10388 EAL-domain associated signalling protein domain IR04_02245 PF01292 Prokaryotic cytochrome b561 IR04_02250 PF04264 YceI-like domain IR04_02265 PF03466 LysR substrate binding domain IR04_02265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_02270 PF06496 Protein of unknown function (DUF1097) IR04_02275 PF11398 Protein of unknown function (DUF2813) IR04_02280 PF02872 5'-nucleotidase, C-terminal domain IR04_02280 PF00149 Calcineurin-like phosphoesterase IR04_02285 PF03741 Integral membrane protein TerC family IR04_02295 PF03831 PhnA domain IR04_02295 PF08274 PhnA Zinc-Ribbon IR04_02335 PF17151 Periplasmic sensor domain IR04_02335 PF00990 Diguanylate cyclase, GGDEF domain IR04_02355 PF17158 Membrane-associated sensor, integral membrane domain IR04_02355 PF00990 Diguanylate cyclase, GGDEF domain IR04_02370 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IR04_02370 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IR04_02370 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IR04_02375 PF02233 NAD(P) transhydrogenase beta subunit IR04_02385 PF00072 Response regulator receiver domain IR04_02385 PF00486 Transcriptional regulatory protein, C terminal IR04_02410 PF01253 Translation initiation factor SUI1 IR04_02420 PF01820 D-ala D-ala ligase N-terminus IR04_02420 PF07478 D-ala D-ala ligase C-terminus IR04_02430 PF13607 Succinyl-CoA ligase like flavodoxin domain IR04_02430 PF13380 CoA binding domain IR04_02430 PF00583 Acetyltransferase (GNAT) family IR04_02435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_02435 PF03466 LysR substrate binding domain IR04_02440 PF00593 TonB dependent receptor IR04_02440 PF07715 TonB-dependent Receptor Plug Domain IR04_02445 PF12793 Sugar transport-related sRNA regulator N-term IR04_02445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IR04_02455 PF03061 Thioesterase superfamily IR04_02475 PF02798 Glutathione S-transferase, N-terminal domain IR04_02475 PF00043 Glutathione S-transferase, C-terminal domain IR04_02490 PF03479 Plants and Prokaryotes Conserved (PCC) domain IR04_02490 PF12804 MobA-like NTP transferase domain IR04_02490 PF00132 Bacterial transferase hexapeptide (six repeats) IR04_02495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IR04_02495 PF00005 ABC transporter IR04_02500 PF12911 N-terminal TM domain of oligopeptide transport permease C IR04_02500 PF00528 Binding-protein-dependent transport system inner membrane component IR04_02505 PF00528 Binding-protein-dependent transport system inner membrane component IR04_02510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IR04_02535 PF00854 POT family IR04_02545 PF07702 UTRA domain IR04_02545 PF00392 Bacterial regulatory proteins, gntR family IR04_02550 PF00528 Binding-protein-dependent transport system inner membrane component IR04_02555 PF00005 ABC transporter IR04_02565 PF00266 Aminotransferase class-V IR04_02575 PF13419 Haloacid dehalogenase-like hydrolase IR04_02580 PF14760 Rnk N-terminus IR04_02580 PF01272 Transcription elongation factor, GreA/GreB, C-term IR04_02585 PF13419 Haloacid dehalogenase-like hydrolase IR04_02600 PF01741 Large-conductance mechanosensitive channel, MscL IR04_02605 PF01268 Formate--tetrahydrofolate ligase IR04_02610 PF01641 SelR domain IR04_02610 PF01625 Peptide methionine sulfoxide reductase IR04_02615 PF01227 GTP cyclohydrolase I IR04_02620 PF03453 MoeA N-terminal region (domain I and II) IR04_02620 PF00994 Probable molybdopterin binding domain IR04_02620 PF03454 MoeA C-terminal region (domain IV) IR04_02625 PF00899 ThiF family IR04_02635 PF00581 Rhodanese-like domain IR04_02650 PF00923 Transaldolase/Fructose-6-phosphate aldolase IR04_02655 PF02779 Transketolase, pyrimidine binding domain IR04_02655 PF02780 Transketolase, C-terminal domain IR04_02655 PF00456 Transketolase, thiamine diphosphate binding domain IR04_02670 PF07517 SecA DEAD-like domain IR04_02670 PF01043 SecA preprotein cross-linking domain IR04_02670 PF02810 SEC-C motif IR04_02670 PF07516 SecA Wing and Scaffold domain IR04_02680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IR04_02680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IR04_02695 PF06942 GlpM protein IR04_02705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_02705 PF03466 LysR substrate binding domain IR04_02710 PF03992 Antibiotic biosynthesis monooxygenase IR04_02720 PF00873 AcrB/AcrD/AcrF family IR04_02735 PF04143 Sulphur transport IR04_02750 PF07992 Pyridine nucleotide-disulphide oxidoreductase IR04_02750 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IR04_02795 PF02378 Phosphotransferase system, EIIC IR04_02795 PF00367 phosphotransferase system, EIIB IR04_02805 PF08244 Glycosyl hydrolases family 32 C terminal IR04_02805 PF00251 Glycosyl hydrolases family 32 N-terminal domain IR04_02810 PF00294 pfkB family carbohydrate kinase IR04_02815 PF01266 FAD dependent oxidoreductase IR04_02815 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IR04_02820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_02820 PF00672 HAMP domain IR04_02825 PF13488 Glycine zipper IR04_02825 PF00691 OmpA family IR04_02830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IR04_02830 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IR04_02835 PF13419 Haloacid dehalogenase-like hydrolase IR04_02840 PF12729 Four helix bundle sensory module for signal transduction IR04_02840 PF00672 HAMP domain IR04_02840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_02845 PF03606 C4-dicarboxylate anaerobic carrier IR04_02850 PF03315 Serine dehydratase beta chain IR04_02850 PF03313 Serine dehydratase alpha chain IR04_02855 PF00474 Sodium:solute symporter family IR04_02870 PF00356 Bacterial regulatory proteins, lacI family IR04_02875 PF00072 Response regulator receiver domain IR04_02875 PF00196 Bacterial regulatory proteins, luxR family IR04_02880 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IR04_02880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_02880 PF07730 Histidine kinase IR04_02880 PF00672 HAMP domain IR04_02885 PF12838 4Fe-4S dicluster domain IR04_02885 PF13187 4Fe-4S dicluster domain IR04_02895 PF00384 Molybdopterin oxidoreductase IR04_02895 PF01568 Molydopterin dinucleotide binding domain IR04_02895 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IR04_02900 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) IR04_02905 PF03264 NapC/NirT cytochrome c family, N-terminal region IR04_02915 PF01966 HD domain IR04_02920 PF00196 Bacterial regulatory proteins, luxR family IR04_02920 PF00072 Response regulator receiver domain IR04_02925 PF07730 Histidine kinase IR04_02925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_02925 PF05231 MASE1 IR04_02930 PF07690 Major Facilitator Superfamily IR04_02940 PF00528 Binding-protein-dependent transport system inner membrane component IR04_02945 PF00005 ABC transporter IR04_02945 PF08402 TOBE domain IR04_02950 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus IR04_02960 PF00108 Thiolase, N-terminal domain IR04_02960 PF02803 Thiolase, C-terminal domain IR04_02965 PF00106 short chain dehydrogenase IR04_02970 PF07549 SecD/SecF GG Motif IR04_02970 PF02355 Protein export membrane protein IR04_02975 PF07549 SecD/SecF GG Motif IR04_02975 PF13721 SecD export protein N-terminal TM region IR04_02975 PF02355 Protein export membrane protein IR04_02990 PF00990 Diguanylate cyclase, GGDEF domain IR04_02990 PF17158 Membrane-associated sensor, integral membrane domain IR04_02995 PF00483 Nucleotidyl transferase IR04_03000 PF00704 Glycosyl hydrolases family 18 IR04_03000 PF06483 Chitinase C IR04_03005 PF00465 Iron-containing alcohol dehydrogenase IR04_03015 PF00072 Response regulator receiver domain IR04_03015 PF02954 Bacterial regulatory protein, Fis family IR04_03015 PF14532 Sigma-54 interaction domain IR04_03020 PF00512 His Kinase A (phospho-acceptor) domain IR04_03020 PF02743 Cache domain IR04_03020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_03030 PF07690 Major Facilitator Superfamily IR04_03035 PF02887 Pyruvate kinase, alpha/beta domain IR04_03035 PF00224 Pyruvate kinase, barrel domain IR04_03040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_03040 PF00512 His Kinase A (phospho-acceptor) domain IR04_03040 PF00672 HAMP domain IR04_03040 PF00072 Response regulator receiver domain IR04_03040 PF01627 Hpt domain IR04_03045 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IR04_03050 PF02142 MGS-like domain IR04_03055 PF00857 Isochorismatase family IR04_03060 PF01219 Prokaryotic diacylglycerol kinase IR04_03075 PF12462 DNA helicase IV / RNA helicase N terminal IR04_03075 PF00580 UvrD/REP helicase N-terminal domain IR04_03075 PF13361 UvrD-like helicase C-terminal domain IR04_03080 PF12805 FUSC-like inner membrane protein yccS IR04_03085 PF00072 Response regulator receiver domain IR04_03085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_03085 PF00512 His Kinase A (phospho-acceptor) domain IR04_03085 PF08448 PAS fold IR04_03085 PF13188 PAS domain IR04_03110 PF03459 TOBE domain IR04_03110 PF00005 ABC transporter IR04_03115 PF00528 Binding-protein-dependent transport system inner membrane component IR04_03125 PF07685 CobB/CobQ-like glutamine amidotransferase domain IR04_03125 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IR04_03170 PF00072 Response regulator receiver domain IR04_03170 PF00512 His Kinase A (phospho-acceptor) domain IR04_03170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_03170 PF09308 LuxQ, periplasmic IR04_03175 PF13407 Periplasmic binding protein domain IR04_03200 PF04363 Protein of unknown function (DUF496) IR04_03215 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IR04_03215 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IR04_03220 PF00230 Major intrinsic protein IR04_03230 PF04324 BFD-like [2Fe-2S] binding domain IR04_03230 PF01266 FAD dependent oxidoreductase IR04_03235 PF00890 FAD binding domain IR04_03240 PF02754 Cysteine-rich domain IR04_03240 PF13183 4Fe-4S dicluster domain IR04_03245 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IR04_03245 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IR04_03250 PF00085 Thioredoxin IR04_03255 PF07690 Major Facilitator Superfamily IR04_03280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_03280 PF03466 LysR substrate binding domain IR04_03285 PF00528 Binding-protein-dependent transport system inner membrane component IR04_03290 PF00528 Binding-protein-dependent transport system inner membrane component IR04_03295 PF00497 Bacterial extracellular solute-binding proteins, family 3 IR04_03300 PF00005 ABC transporter IR04_03310 PF05762 VWA domain containing CoxE-like protein IR04_03315 PF17868 AAA lid domain IR04_03315 PF12592 Protein of unknown function (DUF3763) IR04_03315 PF07728 AAA domain (dynein-related subfamily) IR04_03320 PF00293 NUDIX domain IR04_03325 PF01212 Beta-eliminating lyase IR04_03330 PF00034 Cytochrome c IR04_03335 PF08361 MAATS-type transcriptional repressor, C-terminal region IR04_03335 PF00440 Bacterial regulatory proteins, tetR family IR04_03340 PF00270 DEAD/DEAH box helicase IR04_03340 PF00271 Helicase conserved C-terminal domain IR04_03345 PF04336 Acyl carrier protein phosphodiesterase IR04_03355 PF03222 Tryptophan/tyrosine permease family IR04_03360 PF00672 HAMP domain IR04_03360 PF12729 Four helix bundle sensory module for signal transduction IR04_03360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_03365 PF16363 GDP-mannose 4,6 dehydratase IR04_03370 PF03746 LamB/YcsF family IR04_03380 PF02626 Carboxyltransferase domain, subdomain A and B IR04_03390 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IR04_03390 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IR04_03400 PF00005 ABC transporter IR04_03405 PF13472 GDSL-like Lipase/Acylhydrolase family IR04_03410 PF12241 Trans-2-enoyl-CoA reductase catalytic region IR04_03410 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IR04_03410 PF07055 Enoyl reductase FAD binding domain IR04_03415 PF00990 Diguanylate cyclase, GGDEF domain IR04_03415 PF00498 FHA domain IR04_03415 PF00563 EAL domain IR04_03430 PF00684 DnaJ central domain IR04_03430 PF01556 DnaJ C terminal domain IR04_03430 PF00226 DnaJ domain IR04_03445 PF00665 Integrase core domain IR04_03450 PF01527 Transposase IR04_03465 PF00239 Resolvase, N terminal domain IR04_03465 PF02796 Helix-turn-helix domain of resolvase IR04_03475 PF13419 Haloacid dehalogenase-like hydrolase IR04_03490 PF00294 pfkB family carbohydrate kinase IR04_03495 PF00884 Sulfatase IR04_03505 PF03880 DbpA RNA binding domain IR04_03505 PF00271 Helicase conserved C-terminal domain IR04_03505 PF00270 DEAD/DEAH box helicase IR04_03510 PF08206 Ribonuclease B OB domain IR04_03510 PF00773 RNB domain IR04_03510 PF00575 S1 RNA binding domain IR04_03520 PF12849 PBP superfamily domain IR04_03525 PF01575 MaoC like domain IR04_03530 PF04244 Deoxyribodipyrimidine photo-lyase-related protein IR04_03535 PF18416 N-acetylglucosamine binding protein domain 2 IR04_03535 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading IR04_03540 PF02868 Thermolysin metallopeptidase, alpha-helical domain IR04_03540 PF07504 Fungalysin/Thermolysin Propeptide Motif IR04_03540 PF03413 Peptidase propeptide and YPEB domain IR04_03540 PF01447 Thermolysin metallopeptidase, catalytic domain IR04_03540 PF04151 Bacterial pre-peptidase C-terminal domain IR04_03545 PF04151 Bacterial pre-peptidase C-terminal domain IR04_03545 PF04389 Peptidase family M28 IR04_03550 PF00491 Arginase family IR04_03555 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IR04_03555 PF17944 Arginine decarboxylase C-terminal helical extension IR04_03555 PF17810 Arginine decarboxylase helical bundle domain IR04_03565 PF00571 CBS domain IR04_03565 PF01769 Divalent cation transporter IR04_03565 PF03448 MgtE intracellular N domain IR04_03570 PF00166 Chaperonin 10 Kd subunit IR04_03575 PF00118 TCP-1/cpn60 chaperonin family IR04_03585 PF00696 Amino acid kinase family IR04_03585 PF13840 ACT domain IR04_03590 PF06339 Ectoine synthase IR04_03595 PF00202 Aminotransferase class-III IR04_03600 PF00583 Acetyltransferase (GNAT) family IR04_03605 PF01329 Pterin 4 alpha carbinolamine dehydratase IR04_03610 PF00351 Biopterin-dependent aromatic amino acid hydroxylase IR04_03615 PF00501 AMP-binding enzyme IR04_03615 PF13193 AMP-binding enzyme C-terminal domain IR04_03635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_03635 PF03466 LysR substrate binding domain IR04_03645 PF00892 EamA-like transporter family IR04_03650 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal IR04_03650 PF00132 Bacterial transferase hexapeptide (six repeats) IR04_03650 PF14602 Hexapeptide repeat of succinyl-transferase IR04_03655 PF01595 Cyclin M transmembrane N-terminal domain IR04_03655 PF03471 Transporter associated domain IR04_03655 PF00571 CBS domain IR04_03660 PF02566 OsmC-like protein IR04_03665 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IR04_03670 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IR04_03670 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IR04_03685 PF13520 Amino acid permease IR04_03690 PF00990 Diguanylate cyclase, GGDEF domain IR04_03700 PF04397 LytTr DNA-binding domain IR04_03700 PF00072 Response regulator receiver domain IR04_03705 PF07694 5TMR of 5TMR-LYT IR04_03705 PF06580 Histidine kinase IR04_03705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_03705 PF13492 GAF domain IR04_03720 PF12704 MacB-like periplasmic core domain IR04_03720 PF02687 FtsX-like permease family IR04_03720 PF00005 ABC transporter IR04_03725 PF00005 ABC transporter IR04_03740 PF00248 Aldo/keto reductase family IR04_03745 PF00128 Alpha amylase, catalytic domain IR04_03760 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IR04_03765 PF12262 Bacterial virulence factor lipase N-terminal IR04_03770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_03770 PF08447 PAS fold IR04_03770 PF13426 PAS domain IR04_03775 PF07504 Fungalysin/Thermolysin Propeptide Motif IR04_03775 PF03413 Peptidase propeptide and YPEB domain IR04_03775 PF01447 Thermolysin metallopeptidase, catalytic domain IR04_03775 PF02868 Thermolysin metallopeptidase, alpha-helical domain IR04_03775 PF04151 Bacterial pre-peptidase C-terminal domain IR04_03780 PF03922 OmpW family IR04_03790 PF00768 D-alanyl-D-alanine carboxypeptidase IR04_03795 PF00155 Aminotransferase class I and II IR04_03795 PF00392 Bacterial regulatory proteins, gntR family IR04_03800 PF01654 Cytochrome bd terminal oxidase subunit I IR04_03805 PF02322 Cytochrome bd terminal oxidase subunit II IR04_03815 PF00291 Pyridoxal-phosphate dependent enzyme IR04_03820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_03820 PF03466 LysR substrate binding domain IR04_03860 PF08240 Alcohol dehydrogenase GroES-like domain IR04_03860 PF00107 Zinc-binding dehydrogenase IR04_03865 PF00155 Aminotransferase class I and II IR04_03870 PF01965 DJ-1/PfpI family IR04_03885 PF03466 LysR substrate binding domain IR04_03885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_03890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IR04_03915 PF01966 HD domain IR04_03920 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain IR04_03920 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain IR04_03925 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IR04_03930 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IR04_03930 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain IR04_03955 PF02595 Glycerate kinase family IR04_03960 PF02447 GntP family permease IR04_03965 PF05651 Putative sugar diacid recognition IR04_03965 PF13556 PucR C-terminal helix-turn-helix domain IR04_03965 PF17853 GGDEF-like domain IR04_03970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_03970 PF00672 HAMP domain IR04_03975 PF01243 Pyridoxamine 5'-phosphate oxidase IR04_03980 PF06228 Haem utilisation ChuX/HutX IR04_03985 PF04055 Radical SAM superfamily IR04_03990 PF03544 Gram-negative bacterial TonB protein C-terminal IR04_03995 PF01618 MotA/TolQ/ExbB proton channel family IR04_04000 PF02472 Biopolymer transport protein ExbD/TolR IR04_04005 PF01497 Periplasmic binding protein IR04_04010 PF01032 FecCD transport family IR04_04015 PF00005 ABC transporter IR04_04045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_04045 PF00672 HAMP domain IR04_04045 PF02743 Cache domain IR04_04050 PF00111 2Fe-2S iron-sulfur cluster binding domain IR04_04050 PF03476 MOSC N-terminal beta barrel domain IR04_04050 PF00111 2Fe-2S iron-sulfur cluster binding domain IR04_04050 PF03473 MOSC domain IR04_04050 PF03476 MOSC N-terminal beta barrel domain IR04_04050 PF03473 MOSC domain IR04_04055 PF01979 Amidohydrolase family IR04_04065 PF05656 Protein of unknown function (DUF805) IR04_04075 PF05958 tRNA (Uracil-5-)-methyltransferase IR04_04080 PF05661 Protein of unknown function (DUF808) IR04_04090 PF00313 'Cold-shock' DNA-binding domain IR04_04115 PF00990 Diguanylate cyclase, GGDEF domain IR04_04115 PF08448 PAS fold IR04_04120 PF08220 DeoR-like helix-turn-helix domain IR04_04120 PF00455 DeoR C terminal sensor domain IR04_04135 PF00528 Binding-protein-dependent transport system inner membrane component IR04_04140 PF14785 Maltose transport system permease protein MalF P2 domain IR04_04140 PF00528 Binding-protein-dependent transport system inner membrane component IR04_04145 PF01547 Bacterial extracellular solute-binding protein IR04_04150 PF08402 TOBE domain IR04_04150 PF00005 ABC transporter IR04_04155 PF13302 Acetyltransferase (GNAT) domain IR04_04170 PF01906 Putative heavy-metal-binding IR04_04175 PF00196 Bacterial regulatory proteins, luxR family IR04_04185 PF00072 Response regulator receiver domain IR04_04185 PF01584 CheW-like domain IR04_04190 PF01047 MarR family IR04_04195 PF00990 Diguanylate cyclase, GGDEF domain IR04_04210 PF03707 Bacterial signalling protein N terminal repeat IR04_04210 PF00990 Diguanylate cyclase, GGDEF domain IR04_04210 PF00563 EAL domain IR04_04230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_04230 PF03466 LysR substrate binding domain IR04_04235 PF00563 EAL domain IR04_04235 PF00990 Diguanylate cyclase, GGDEF domain IR04_04250 PF05726 Pirin C-terminal cupin domain IR04_04250 PF02678 Pirin IR04_04255 PF06865 Pyrimidine/purine nucleoside phosphorylase IR04_04265 PF07690 Major Facilitator Superfamily IR04_04275 PF00672 HAMP domain IR04_04275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_04275 PF17200 Single Cache domain 2 IR04_04280 PF13654 AAA domain IR04_04280 PF05362 Lon protease (S16) C-terminal proteolytic domain IR04_04290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IR04_04290 PF00005 ABC transporter IR04_04295 PF00497 Bacterial extracellular solute-binding proteins, family 3 IR04_04300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_04300 PF08447 PAS fold IR04_04300 PF13426 PAS domain IR04_04315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_04315 PF03466 LysR substrate binding domain IR04_04320 PF02652 L-lactate permease IR04_04325 PF01070 FMN-dependent dehydrogenase IR04_04335 PF03618 Kinase/pyrophosphorylase IR04_04345 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IR04_04345 PF02896 PEP-utilising enzyme, TIM barrel domain IR04_04345 PF00391 PEP-utilising enzyme, mobile domain IR04_04350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_04350 PF08447 PAS fold IR04_04355 PF01554 MatE IR04_04360 PF00271 Helicase conserved C-terminal domain IR04_04360 PF00270 DEAD/DEAH box helicase IR04_04365 PF03466 LysR substrate binding domain IR04_04365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_04375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IR04_04385 PF00664 ABC transporter transmembrane region IR04_04385 PF00005 ABC transporter IR04_04405 PF01810 LysE type translocator IR04_04410 PF12833 Helix-turn-helix domain IR04_04425 PF01557 Fumarylacetoacetate (FAA) hydrolase family IR04_04430 PF01047 MarR family IR04_04435 PF02566 OsmC-like protein IR04_04440 PF13609 Gram-negative porin IR04_04445 PF00892 EamA-like transporter family IR04_04450 PF00462 Glutaredoxin IR04_04455 PF07670 Nucleoside recognition IR04_04460 PF07670 Nucleoside recognition IR04_04465 PF03600 Citrate transporter IR04_04475 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IR04_04475 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IR04_04480 PF00730 HhH-GPD superfamily base excision DNA repair protein IR04_04480 PF06029 AlkA N-terminal domain IR04_04485 PF07681 DoxX IR04_04490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_04490 PF03466 LysR substrate binding domain IR04_04510 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IR04_04520 PF07148 Maltose operon periplasmic protein precursor (MalM) IR04_04525 PF02264 LamB porin IR04_04530 PF00128 Alpha amylase, catalytic domain IR04_04530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IR04_04540 PF00672 HAMP domain IR04_04540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_04540 PF16591 Helical bimodular sensor domain IR04_04555 PF00672 HAMP domain IR04_04555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_04565 PF00793 DAHP synthetase I family IR04_04570 PF00005 ABC transporter IR04_04575 PF00528 Binding-protein-dependent transport system inner membrane component IR04_04580 PF00497 Bacterial extracellular solute-binding proteins, family 3 IR04_04585 PF00528 Binding-protein-dependent transport system inner membrane component IR04_04590 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IR04_04590 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IR04_04590 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IR04_04590 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IR04_04600 PF04225 Opacity-associated protein A LysM-like domain IR04_04600 PF01551 Peptidase family M23 IR04_04610 PF02378 Phosphotransferase system, EIIC IR04_04610 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IR04_04610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IR04_04615 PF08125 Mannitol dehydrogenase C-terminal domain IR04_04615 PF01232 Mannitol dehydrogenase Rossmann domain IR04_04620 PF05068 Mannitol repressor IR04_04625 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IR04_04655 PF13460 NAD(P)H-binding IR04_04660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_04660 PF03466 LysR substrate binding domain IR04_04665 PF02743 Cache domain IR04_04665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_04665 PF00672 HAMP domain IR04_04670 PF00106 short chain dehydrogenase IR04_04675 PF03466 LysR substrate binding domain IR04_04675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_04680 PF04013 Putative SAM-dependent RNA methyltransferase IR04_04685 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IR04_04695 PF13520 Amino acid permease IR04_04700 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain IR04_04700 PF01276 Orn/Lys/Arg decarboxylase, major domain IR04_04700 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain IR04_04705 PF00171 Aldehyde dehydrogenase family IR04_04710 PF01037 Lrp/AsnC ligand binding domain IR04_04715 PF02743 Cache domain IR04_04715 PF00672 HAMP domain IR04_04715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_04725 PF00474 Sodium:solute symporter family IR04_04735 PF14850 DNA-binding domain of Proline dehydrogenase IR04_04735 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IR04_04735 PF00171 Aldehyde dehydrogenase family IR04_04735 PF01619 Proline dehydrogenase IR04_04740 PF12833 Helix-turn-helix domain IR04_04750 PF03781 Sulfatase-modifying factor enzyme 1 IR04_04755 PF00072 Response regulator receiver domain IR04_04755 PF00196 Bacterial regulatory proteins, luxR family IR04_04765 PF00529 HlyD membrane-fusion protein of T1SS IR04_04780 PF03412 Peptidase C39 family IR04_04780 PF00664 ABC transporter transmembrane region IR04_04780 PF00005 ABC transporter IR04_04790 PF00072 Response regulator receiver domain IR04_04790 PF00486 Transcriptional regulatory protein, C terminal IR04_04800 PF02743 Cache domain IR04_04800 PF00672 HAMP domain IR04_04800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_04805 PF00072 Response regulator receiver domain IR04_04805 PF01339 CheB methylesterase IR04_04810 PF03975 CheD chemotactic sensory transduction IR04_04815 PF01739 CheR methyltransferase, SAM binding domain IR04_04815 PF03705 CheR methyltransferase, all-alpha domain IR04_04820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_04820 PF00672 HAMP domain IR04_04820 PF02203 Tar ligand binding domain homologue IR04_04825 PF01584 CheW-like domain IR04_04830 PF01584 CheW-like domain IR04_04835 PF01584 CheW-like domain IR04_04835 PF09078 CheY binding IR04_04835 PF02895 Signal transducing histidine kinase, homodimeric domain IR04_04835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_04835 PF01627 Hpt domain IR04_04840 PF00072 Response regulator receiver domain IR04_04860 PF00528 Binding-protein-dependent transport system inner membrane component IR04_04865 PF12911 N-terminal TM domain of oligopeptide transport permease C IR04_04865 PF00528 Binding-protein-dependent transport system inner membrane component IR04_04875 PF08019 Phosphoethanolamine transferase EptA/EptB IR04_04875 PF00884 Sulfatase IR04_04880 PF00512 His Kinase A (phospho-acceptor) domain IR04_04880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_04880 PF08521 Two-component sensor kinase N-terminal IR04_04885 PF00486 Transcriptional regulatory protein, C terminal IR04_04885 PF00072 Response regulator receiver domain IR04_04905 PF00501 AMP-binding enzyme IR04_04915 PF05127 Helicase IR04_04915 PF13718 GNAT acetyltransferase 2 IR04_04920 PF13416 Bacterial extracellular solute-binding protein IR04_04925 PF08775 ParB family IR04_04925 PF02195 ParB-like nuclease domain IR04_04930 PF13614 AAA domain IR04_04930 PF18607 ParA helix turn helix domain IR04_04935 PF00258 Flavodoxin IR04_04940 PF12631 MnmE helical domain IR04_04940 PF10396 GTP-binding protein TrmE N-terminus IR04_04940 PF01926 50S ribosome-binding GTPase IR04_04945 PF02096 60Kd inner membrane protein IR04_04945 PF14849 YidC periplasmic domain IR04_04950 PF00825 Ribonuclease P IR04_04955 PF00468 Ribosomal protein L34 IR04_04960 PF00005 ABC transporter IR04_04965 PF00528 Binding-protein-dependent transport system inner membrane component IR04_04970 PF00497 Bacterial extracellular solute-binding proteins, family 3 IR04_04975 PF00308 Bacterial dnaA protein IR04_04975 PF11638 DnaA N-terminal domain IR04_04975 PF08299 Bacterial dnaA protein helix-turn-helix IR04_04980 PF02767 DNA polymerase III beta subunit, central domain IR04_04980 PF02768 DNA polymerase III beta subunit, C-terminal domain IR04_04980 PF00712 DNA polymerase III beta subunit, N-terminal domain IR04_04985 PF02463 RecF/RecN/SMC N terminal domain IR04_04990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_04990 PF18053 DNA gyrase B subunit insert domain IR04_04990 PF01751 Toprim domain IR04_04990 PF00986 DNA gyrase B subunit, carboxyl terminus IR04_04990 PF00204 DNA gyrase B IR04_05005 PF00011 Hsp20/alpha crystallin family IR04_05010 PF00155 Aminotransferase class I and II IR04_05015 PF05746 DALR anticodon binding domain IR04_05015 PF02092 Glycyl-tRNA synthetase beta subunit IR04_05020 PF02091 Glycyl-tRNA synthetase alpha subunit IR04_05025 PF01169 Uncharacterized protein family UPF0016 IR04_05035 PF01206 Sulfurtransferase TusA IR04_05045 PF08240 Alcohol dehydrogenase GroES-like domain IR04_05045 PF00107 Zinc-binding dehydrogenase IR04_05050 PF00291 Pyridoxal-phosphate dependent enzyme IR04_05050 PF00585 C-terminal regulatory domain of Threonine dehydratase IR04_05055 PF00920 Dehydratase family IR04_05060 PF01063 Amino-transferase class IV IR04_05070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IR04_05070 PF00205 Thiamine pyrophosphate enzyme, central domain IR04_05070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IR04_05075 PF01078 Magnesium chelatase, subunit ChlI IR04_05075 PF13335 Magnesium chelatase, subunit ChlI C-terminal IR04_05080 PF01553 Acyltransferase IR04_05085 PF01323 DSBA-like thioredoxin domain IR04_05095 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase IR04_05095 PF12801 4Fe-4S binding domain IR04_05095 PF13746 4Fe-4S dicluster domain IR04_05100 PF06288 Protein of unknown function (DUF1040) IR04_05110 PF07070 SpoOM protein IR04_05115 PF03006 Haemolysin-III related IR04_05125 PF02386 Cation transport protein IR04_05130 PF02254 TrkA-N domain IR04_05130 PF02080 TrkA-C domain IR04_05135 PF01189 16S rRNA methyltransferase RsmB/F IR04_05135 PF01029 NusB family IR04_05140 PF00551 Formyl transferase IR04_05140 PF02911 Formyl transferase, C-terminal domain IR04_05145 PF01327 Polypeptide deformylase IR04_05150 PF01476 LysM domain IR04_05155 PF17782 DprA winged helix domain IR04_05155 PF02481 DNA recombination-mediator protein A IR04_05160 PF04361 Protein of unknown function (DUF494) IR04_05165 PF01396 Topoisomerase DNA binding C4 zinc finger IR04_05170 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IR04_05170 PF02222 ATP-grasp domain IR04_05175 PF00731 AIR carboxylase IR04_05180 PF01300 Telomere recombination IR04_05185 PF01218 Coproporphyrinogen III oxidase IR04_05190 PF01488 Shikimate / quinate 5-dehydrogenase IR04_05190 PF08501 Shikimate dehydrogenase substrate binding domain IR04_05190 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IR04_05200 PF00132 Bacterial transferase hexapeptide (six repeats) IR04_05240 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IR04_05245 PF01964 Radical SAM ThiC family IR04_05245 PF13667 ThiC-associated domain IR04_05250 PF02581 Thiamine monophosphate synthase IR04_05255 PF00899 ThiF family IR04_05260 PF02597 ThiS family IR04_05265 PF05690 Thiazole biosynthesis protein ThiG IR04_05270 PF06968 Biotin and Thiamin Synthesis associated domain IR04_05270 PF04055 Radical SAM superfamily IR04_05275 PF01321 Creatinase/Prolidase N-terminal domain IR04_05275 PF00557 Metallopeptidase family M24 IR04_05275 PF01321 Creatinase/Prolidase N-terminal domain IR04_05275 PF00557 Metallopeptidase family M24 IR04_05280 PF03466 LysR substrate binding domain IR04_05280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_05285 PF07690 Major Facilitator Superfamily IR04_05295 PF01037 Lrp/AsnC ligand binding domain IR04_05300 PF00990 Diguanylate cyclase, GGDEF domain IR04_05300 PF00563 EAL domain IR04_05300 PF08448 PAS fold IR04_05305 PF04445 Putative SAM-dependent methyltransferase IR04_05315 PF00892 EamA-like transporter family IR04_05320 PF00582 Universal stress protein family IR04_05325 PF00210 Ferritin-like domain IR04_05330 PF10625 Universal stress protein B (UspB) IR04_05345 PF02646 RmuC family IR04_05350 PF01209 ubiE/COQ5 methyltransferase family IR04_05355 PF02036 SCP-2 sterol transfer family IR04_05360 PF03109 ABC1 family IR04_05365 PF02416 mttA/Hcf106 family IR04_05370 PF02416 mttA/Hcf106 family IR04_05375 PF00902 Sec-independent protein translocase protein (TatC) IR04_05380 PF03150 Di-haem cytochrome c peroxidase IR04_05380 PF00034 Cytochrome c IR04_05385 PF01554 MatE IR04_05395 PF01726 LexA DNA binding domain IR04_05395 PF00717 Peptidase S24-like IR04_05400 PF01553 Acyltransferase IR04_05405 PF01040 UbiA prenyltransferase family IR04_05410 PF04345 Chorismate lyase IR04_05415 PF03748 Flagellar basal body-associated protein FliL IR04_05420 PF00672 HAMP domain IR04_05420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_05420 PF02203 Tar ligand binding domain homologue IR04_05430 PF01694 Rhomboid family IR04_05430 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease IR04_05435 PF00581 Rhodanese-like domain IR04_05440 PF01026 TatD related DNase IR04_05445 PF00490 Delta-aminolevulinic acid dehydratase IR04_05455 PF01367 5'-3' exonuclease, C-terminal SAM fold IR04_05455 PF00476 DNA polymerase family A IR04_05455 PF01612 3'-5' exonuclease IR04_05455 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IR04_05460 PF01926 50S ribosome-binding GTPase IR04_05475 PF04220 Der GTPase activator (YihI) IR04_05480 PF10675 Protein of unknown function (DUF2489) IR04_05485 PF06969 HemN C-terminal domain IR04_05485 PF04055 Radical SAM superfamily IR04_05490 PF07219 HemY protein N-terminus IR04_05495 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase IR04_05500 PF02602 Uroporphyrinogen-III synthase HemD IR04_05505 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IR04_05505 PF03900 Porphobilinogen deaminase, C-terminal domain IR04_05515 PF12633 Adenylate cyclase NT domain IR04_05515 PF01295 Adenylate cyclase, class-I IR04_05520 PF01491 Frataxin-like domain IR04_05530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IR04_05530 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IR04_05535 PF01678 Diaminopimelate epimerase IR04_05540 PF04340 Protein of unknown function, DUF484 IR04_05545 PF00589 Phage integrase family IR04_05545 PF02899 Phage integrase, N-terminal SAM-like domain IR04_05550 PF13419 Haloacid dehalogenase-like hydrolase IR04_05555 PF08495 FIST N domain IR04_05555 PF00563 EAL domain IR04_05555 PF00990 Diguanylate cyclase, GGDEF domain IR04_05555 PF10442 FIST C domain IR04_05575 PF12146 Serine aminopeptidase, S33 IR04_05580 PF01810 LysE type translocator IR04_05585 PF00563 EAL domain IR04_05585 PF08668 HDOD domain IR04_05590 PF00210 Ferritin-like domain IR04_05630 PF02881 SRP54-type protein, helical bundle domain IR04_05630 PF00448 SRP54-type protein, GTPase domain IR04_05635 PF00005 ABC transporter IR04_05640 PF18075 FtsX extracellular domain IR04_05645 PF00140 Sigma-70 factor, region 1.2 IR04_05645 PF04542 Sigma-70 region 2 IR04_05645 PF04545 Sigma-70, region 4 IR04_05650 PF07992 Pyridine nucleotide-disulphide oxidoreductase IR04_05650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IR04_05655 PF00440 Bacterial regulatory proteins, tetR family IR04_05665 PF05958 tRNA (Uracil-5-)-methyltransferase IR04_05670 PF07715 TonB-dependent Receptor Plug Domain IR04_05670 PF00593 TonB dependent receptor IR04_05675 PF05922 Peptidase inhibitor I9 IR04_05675 PF00082 Subtilase family IR04_05675 PF04151 Bacterial pre-peptidase C-terminal domain IR04_05680 PF01177 Asp/Glu/Hydantoin racemase IR04_05715 PF03466 LysR substrate binding domain IR04_05715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_05720 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IR04_05720 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IR04_05725 PF04380 Membrane fusogenic activity IR04_05730 PF00873 AcrB/AcrD/AcrF family IR04_05735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IR04_05740 PF00440 Bacterial regulatory proteins, tetR family IR04_05745 PF13361 UvrD-like helicase C-terminal domain IR04_05745 PF00580 UvrD/REP helicase N-terminal domain IR04_05750 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IR04_05785 PF00005 ABC transporter IR04_05785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IR04_05790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IR04_05800 PF00528 Binding-protein-dependent transport system inner membrane component IR04_05800 PF12911 N-terminal TM domain of oligopeptide transport permease C IR04_05810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IR04_05880 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IR04_05885 PF01432 Peptidase family M3 IR04_05890 PF13361 UvrD-like helicase C-terminal domain IR04_05890 PF00580 UvrD/REP helicase N-terminal domain IR04_05895 PF01810 LysE type translocator IR04_05900 PF12833 Helix-turn-helix domain IR04_05910 PF00892 EamA-like transporter family IR04_05915 PF16124 RecQ zinc-binding IR04_05915 PF09382 RQC domain IR04_05915 PF00271 Helicase conserved C-terminal domain IR04_05915 PF00270 DEAD/DEAH box helicase IR04_05915 PF00570 HRDC domain IR04_05930 PF00664 ABC transporter transmembrane region IR04_05930 PF00005 ABC transporter IR04_05935 PF07715 TonB-dependent Receptor Plug Domain IR04_05935 PF00593 TonB dependent receptor IR04_05940 PF00005 ABC transporter IR04_05945 PF01497 Periplasmic binding protein IR04_05950 PF01032 FecCD transport family IR04_05955 PF01380 SIS domain IR04_05955 PF01418 Helix-turn-helix domain, rpiR family IR04_05960 PF13580 SIS domain IR04_05965 PF02378 Phosphotransferase system, EIIC IR04_05965 PF00367 phosphotransferase system, EIIB IR04_05970 PF03350 Uncharacterized protein family, UPF0114 IR04_05975 PF08340 Domain of unknown function (DUF1732) IR04_05975 PF03755 YicC-like family, N-terminal region IR04_05985 PF00156 Phosphoribosyl transferase domain IR04_05990 PF03279 Bacterial lipid A biosynthesis acyltransferase IR04_05995 PF03279 Bacterial lipid A biosynthesis acyltransferase IR04_06000 PF00440 Bacterial regulatory proteins, tetR family IR04_06005 PF02441 Flavoprotein IR04_06005 PF04127 DNA / pantothenate metabolism flavoprotein IR04_06010 PF02743 Cache domain IR04_06010 PF00672 HAMP domain IR04_06010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_06015 PF04002 RadC-like JAB domain IR04_06020 PF00830 Ribosomal L28 family IR04_06025 PF00471 Ribosomal protein L33 IR04_06035 PF06827 Zinc finger found in FPG and IleRS IR04_06035 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IR04_06035 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IR04_06040 PF01467 Cytidylyltransferase-like IR04_06045 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IR04_06050 PF00535 Glycosyl transferase family 2 IR04_06055 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IR04_06090 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IR04_06095 PF04488 Glycosyltransferase sugar-binding region containing DXD motif IR04_06105 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IR04_06120 PF01522 Polysaccharide deacetylase IR04_06120 PF00457 Glycosyl hydrolases family 11 IR04_06125 PF01370 NAD dependent epimerase/dehydratase family IR04_06130 PF00483 Nucleotidyl transferase IR04_06130 PF01050 Mannose-6-phosphate isomerase IR04_06135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IR04_06135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IR04_06135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IR04_06135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IR04_06140 PF16363 GDP-mannose 4,6 dehydratase IR04_06145 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IR04_06160 PF14524 Wzt C-terminal domain IR04_06160 PF00005 ABC transporter IR04_06170 PF00501 AMP-binding enzyme IR04_06170 PF13193 AMP-binding enzyme C-terminal domain IR04_06175 PF00171 Aldehyde dehydrogenase family IR04_06175 PF00465 Iron-containing alcohol dehydrogenase IR04_06185 PF00132 Bacterial transferase hexapeptide (six repeats) IR04_06190 PF01609 Transposase DDE domain IR04_06190 PF13808 DDE_Tnp_1-associated IR04_06210 PF02719 Polysaccharide biosynthesis protein IR04_06215 PF01370 NAD dependent epimerase/dehydratase family IR04_06220 PF02397 Bacterial sugar transferase IR04_06225 PF10996 Beta-Casp domain IR04_06225 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain IR04_06225 PF00753 Metallo-beta-lactamase superfamily IR04_06230 PF00924 Mechanosensitive ion channel IR04_06235 PF03167 Uracil DNA glycosylase superfamily IR04_06240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IR04_06245 PF04222 Protein of unknown function (DUF416) IR04_06250 PF01238 Phosphomannose isomerase type I IR04_06255 PF00480 ROK family IR04_06260 PF00571 CBS domain IR04_06260 PF01595 Cyclin M transmembrane N-terminal domain IR04_06265 PF00216 Bacterial DNA-binding protein IR04_06275 PF02843 Phosphoribosylglycinamide synthetase, C domain IR04_06275 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IR04_06275 PF02844 Phosphoribosylglycinamide synthetase, N domain IR04_06280 PF01808 AICARFT/IMPCHase bienzyme IR04_06280 PF02142 MGS-like domain IR04_06290 PF13411 MerR HTH family regulatory protein IR04_06295 PF00486 Transcriptional regulatory protein, C terminal IR04_06295 PF18500 CadC C-terminal domain 1 IR04_06300 PF13520 Amino acid permease IR04_06305 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain IR04_06305 PF01276 Orn/Lys/Arg decarboxylase, major domain IR04_06305 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain IR04_06310 PF00672 HAMP domain IR04_06310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_06310 PF17200 Single Cache domain 2 IR04_06325 PF00593 TonB dependent receptor IR04_06325 PF07715 TonB-dependent Receptor Plug Domain IR04_06330 PF01081 KDPG and KHG aldolase IR04_06335 PF02447 GntP family permease IR04_06340 PF01202 Shikimate kinase IR04_06345 PF00920 Dehydratase family IR04_06350 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IR04_06350 PF00356 Bacterial regulatory proteins, lacI family IR04_06355 PF02954 Bacterial regulatory protein, Fis family IR04_06360 PF01207 Dihydrouridine synthase (Dus) IR04_06370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IR04_06370 PF00289 Biotin carboxylase, N-terminal domain IR04_06370 PF02785 Biotin carboxylase C-terminal domain IR04_06375 PF00364 Biotin-requiring enzyme IR04_06380 PF01220 Dehydroquinase class II IR04_06385 PF13193 AMP-binding enzyme C-terminal domain IR04_06385 PF16177 Acetyl-coenzyme A synthetase N-terminus IR04_06385 PF00501 AMP-binding enzyme IR04_06400 PF12832 MFS_1 like family IR04_06405 PF09456 RcsC Alpha-Beta-Loop (ABL) IR04_06405 PF00072 Response regulator receiver domain IR04_06405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_06405 PF00512 His Kinase A (phospho-acceptor) domain IR04_06410 PF02541 Ppx/GppA phosphatase family IR04_06415 PF00270 DEAD/DEAH box helicase IR04_06415 PF00271 Helicase conserved C-terminal domain IR04_06420 PF00085 Thioredoxin IR04_06425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IR04_06425 PF07498 Rho termination factor, N-terminal domain IR04_06425 PF07497 Rho termination factor, RNA-binding domain IR04_06435 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase IR04_06440 PF00111 2Fe-2S iron-sulfur cluster binding domain IR04_06440 PF00970 Oxidoreductase FAD-binding domain IR04_06440 PF00175 Oxidoreductase NAD-binding domain IR04_06445 PF00175 Oxidoreductase NAD-binding domain IR04_06480 PF13091 PLD-like domain IR04_06490 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IR04_06490 PF01565 FAD binding domain IR04_06495 PF08279 HTH domain IR04_06495 PF03099 Biotin/lipoate A/B protein ligase family IR04_06495 PF02237 Biotin protein ligase C terminal domain IR04_06500 PF00485 Phosphoribulokinase / Uridine kinase family IR04_06525 PF00009 Elongation factor Tu GTP binding domain IR04_06525 PF03144 Elongation factor Tu domain 2 IR04_06525 PF03143 Elongation factor Tu C-terminal domain IR04_06530 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IR04_06535 PF02357 Transcription termination factor nusG IR04_06535 PF00467 KOW motif IR04_06540 PF00298 Ribosomal protein L11, RNA binding domain IR04_06540 PF03946 Ribosomal protein L11, N-terminal domain IR04_06545 PF00687 Ribosomal protein L1p/L10e family IR04_06550 PF00466 Ribosomal protein L10 IR04_06555 PF00542 Ribosomal protein L7/L12 C-terminal domain IR04_06555 PF16320 Ribosomal protein L7/L12 dimerisation domain IR04_06560 PF04563 RNA polymerase beta subunit IR04_06560 PF00562 RNA polymerase Rpb2, domain 6 IR04_06560 PF04560 RNA polymerase Rpb2, domain 7 IR04_06560 PF10385 RNA polymerase beta subunit external 1 domain IR04_06560 PF04561 RNA polymerase Rpb2, domain 2 IR04_06560 PF04565 RNA polymerase Rpb2, domain 3 IR04_06565 PF04997 RNA polymerase Rpb1, domain 1 IR04_06565 PF04983 RNA polymerase Rpb1, domain 3 IR04_06565 PF00623 RNA polymerase Rpb1, domain 2 IR04_06565 PF05000 RNA polymerase Rpb1, domain 4 IR04_06565 PF04998 RNA polymerase Rpb1, domain 5 IR04_06570 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ IR04_06575 PF09297 NADH pyrophosphatase zinc ribbon domain IR04_06575 PF00293 NUDIX domain IR04_06580 PF01208 Uroporphyrinogen decarboxylase (URO-D) IR04_06585 PF00440 Bacterial regulatory proteins, tetR family IR04_06585 PF08360 QacR-like protein, C-terminal region IR04_06595 PF01551 Peptidase family M23 IR04_06600 PF01676 Metalloenzyme superfamily IR04_06600 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IR04_06610 PF00939 Sodium:sulfate symporter transmembrane region IR04_06615 PF02666 Phosphatidylserine decarboxylase IR04_06620 PF03193 RsgA GTPase IR04_06625 PF00929 Exonuclease IR04_06675 PF08331 Domain of unknown function (DUF1730) IR04_06680 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IR04_06685 PF01520 N-acetylmuramoyl-L-alanine amidase IR04_06690 PF08676 MutL C terminal dimerisation domain IR04_06690 PF01119 DNA mismatch repair protein, C-terminal domain IR04_06700 PF17209 Hfq protein IR04_06705 PF13167 GTP-binding GTPase N-terminal IR04_06705 PF16360 GTP-binding GTPase Middle Region IR04_06705 PF01926 50S ribosome-binding GTPase IR04_06710 PF01145 SPFH domain / Band 7 family IR04_06710 PF12221 Bacterial membrane protein N terminal IR04_06715 PF01145 SPFH domain / Band 7 family IR04_06720 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) IR04_06725 PF04102 SlyX IR04_06735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IR04_06735 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IR04_06740 PF08348 YheO-like PAS domain IR04_06740 PF13309 HTH domain IR04_06745 PF02635 DsrE/DsrF-like family IR04_06750 PF02635 DsrE/DsrF-like family IR04_06760 PF00164 Ribosomal protein S12/S23 IR04_06765 PF00177 Ribosomal protein S7p/S5e IR04_06770 PF00009 Elongation factor Tu GTP binding domain IR04_06770 PF03764 Elongation factor G, domain IV IR04_06770 PF14492 Elongation Factor G, domain II IR04_06770 PF00679 Elongation factor G C-terminus IR04_06770 PF03144 Elongation factor Tu domain 2 IR04_06775 PF00009 Elongation factor Tu GTP binding domain IR04_06775 PF03143 Elongation factor Tu C-terminal domain IR04_06775 PF03144 Elongation factor Tu domain 2 IR04_06780 PF04324 BFD-like [2Fe-2S] binding domain IR04_06785 PF00210 Ferritin-like domain IR04_06790 PF01250 Ribosomal protein S6 IR04_06795 PF00436 Single-strand binding protein family IR04_06800 PF01084 Ribosomal protein S18 IR04_06805 PF03948 Ribosomal protein L9, C-terminal domain IR04_06805 PF01281 Ribosomal protein L9, N-terminal domain IR04_06815 PF00772 DnaB-like helicase N terminal domain IR04_06815 PF03796 DnaB-like helicase C terminal domain IR04_06820 PF00842 Alanine racemase, C-terminal domain IR04_06820 PF01168 Alanine racemase, N-terminal domain IR04_06825 PF01894 Uncharacterised protein family UPF0047 IR04_06830 PF00342 Phosphoglucose isomerase IR04_06835 PF12706 Beta-lactamase superfamily domain IR04_06845 PF01475 Ferric uptake regulator family IR04_06850 PF01207 Dihydrouridine synthase (Dus) IR04_06855 PF09583 Phage shock protein G (Phageshock_PspG) IR04_06870 PF00175 Oxidoreductase NAD-binding domain IR04_06870 PF00258 Flavodoxin IR04_06870 PF00667 FAD binding domain IR04_06875 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IR04_06875 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IR04_06880 PF01507 Phosphoadenosine phosphosulfate reductase family IR04_06915 PF00999 Sodium/hydrogen exchanger family IR04_06920 PF02607 B12 binding domain IR04_06920 PF02310 B12 binding domain IR04_06920 PF02574 Homocysteine S-methyltransferase IR04_06920 PF02965 Vitamin B12 dependent methionine synthase, activation domain IR04_06920 PF00809 Pterin binding enzyme IR04_06925 PF01842 ACT domain IR04_06925 PF00696 Amino acid kinase family IR04_06930 PF00266 Aminotransferase class-V IR04_06940 PF00005 ABC transporter IR04_06940 PF17760 UvrA interaction domain IR04_06940 PF17755 UvrA DNA-binding domain IR04_06950 PF00196 Bacterial regulatory proteins, luxR family IR04_06955 PF00436 Single-strand binding protein family IR04_06960 PF00563 EAL domain IR04_06960 PF17157 Gammaproteobacterial periplasmic sensor domain IR04_06960 PF00990 Diguanylate cyclase, GGDEF domain IR04_06980 PF07660 Secretin and TonB N terminus short domain IR04_06980 PF03958 Bacterial type II/III secretion system short domain IR04_06980 PF00263 Bacterial type II and III secretion system protein IR04_06980 PF11741 AMIN domain IR04_06985 PF13401 AAA domain IR04_06985 PF01471 Putative peptidoglycan binding domain IR04_06995 PF00437 Type II/IV secretion system protein IR04_07000 PF00482 Type II secretion system (T2SS), protein F IR04_07010 PF07963 Prokaryotic N-terminal methylation motif IR04_07010 PF00114 Pilin (bacterial filament) IR04_07015 PF00114 Pilin (bacterial filament) IR04_07015 PF07963 Prokaryotic N-terminal methylation motif IR04_07050 PF04085 rod shape-determining protein MreC IR04_07055 PF04093 rod shape-determining protein MreD IR04_07060 PF02545 Maf-like protein IR04_07065 PF10150 Ribonuclease E/G family IR04_07065 PF00575 S1 RNA binding domain IR04_07070 PF13116 Protein of unknown function IR04_07070 PF13502 AsmA-like C-terminal region IR04_07075 PF00795 Carbon-nitrogen hydrolase IR04_07080 PF01523 Putative modulator of DNA gyrase IR04_07095 PF06877 Regulator of ribonuclease activity B IR04_07110 PF00582 Universal stress protein family IR04_07120 PF16868 NMT1-like family IR04_07125 PF02863 Arginine repressor, C-terminal domain IR04_07125 PF01316 Arginine repressor, DNA binding domain IR04_07130 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IR04_07130 PF00056 lactate/malate dehydrogenase, NAD binding domain IR04_07135 PF13520 Amino acid permease IR04_07140 PF13520 Amino acid permease IR04_07145 PF00348 Polyprenyl synthetase IR04_07150 PF00829 Ribosomal prokaryotic L21 protein IR04_07155 PF01016 Ribosomal L27 protein IR04_07160 PF01926 50S ribosome-binding GTPase IR04_07160 PF01018 GTP1/OBG IR04_07165 PF06738 Putative threonine/serine exporter IR04_07170 PF12821 Threonine/Serine exporter, ThrE IR04_07175 PF00186 Dihydrofolate reductase IR04_07180 PF00149 Calcineurin-like phosphoesterase IR04_07185 PF04379 ApaG domain IR04_07190 PF00398 Ribosomal RNA adenine dimethylase IR04_07195 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IR04_07200 PF09312 SurA N-terminal domain IR04_07205 PF03968 OstA-like protein IR04_07205 PF04453 LPS transport system D IR04_07210 PF05099 Tellurite resistance protein TerB IR04_07210 PF00226 DnaJ domain IR04_07240 PF00672 HAMP domain IR04_07240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_07240 PF12729 Four helix bundle sensory module for signal transduction IR04_07265 PF01464 Transglycosylase SLT domain IR04_07265 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain IR04_07270 PF04362 Bacterial Fe(2+) trafficking IR04_07275 PF14815 NUDIX domain IR04_07275 PF10576 Iron-sulfur binding domain of endonuclease III IR04_07275 PF00633 Helix-hairpin-helix motif IR04_07275 PF00730 HhH-GPD superfamily base excision DNA repair protein IR04_07280 PF02390 Putative methyltransferase IR04_07285 PF04960 Glutaminase IR04_07290 PF04055 Radical SAM superfamily IR04_07290 PF06969 HemN C-terminal domain IR04_07295 PF01725 Ham1 family IR04_07305 PF02594 Uncharacterised ACR, YggU family COG1872 IR04_07310 PF02325 YGGT family IR04_07315 PF03807 NADP oxidoreductase coenzyme F420-dependent IR04_07315 PF14748 Pyrroline-5-carboxylate reductase dimerisation IR04_07320 PF01168 Alanine racemase, N-terminal domain IR04_07325 PF00437 Type II/IV secretion system protein IR04_07330 PF00437 Type II/IV secretion system protein IR04_07340 PF00579 tRNA synthetases class I (W and Y) IR04_07340 PF01479 S4 domain IR04_07345 PF03652 Holliday junction resolvase IR04_07350 PF02622 Uncharacterized ACR, COG1678 IR04_07355 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IR04_07355 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IR04_07360 PF04452 RNA methyltransferase IR04_07365 PF04231 Endonuclease I IR04_07370 PF10263 SprT-like family IR04_07370 PF17283 SprT-like zinc ribbon domain IR04_07375 PF02773 S-adenosylmethionine synthetase, C-terminal domain IR04_07375 PF00438 S-adenosylmethionine synthetase, N-terminal domain IR04_07375 PF02772 S-adenosylmethionine synthetase, central domain IR04_07385 PF00456 Transketolase, thiamine diphosphate binding domain IR04_07385 PF02779 Transketolase, pyrimidine binding domain IR04_07385 PF02780 Transketolase, C-terminal domain IR04_07390 PF03466 LysR substrate binding domain IR04_07390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_07395 PF07715 TonB-dependent Receptor Plug Domain IR04_07395 PF00593 TonB dependent receptor IR04_07400 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IR04_07400 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IR04_07405 PF00162 Phosphoglycerate kinase IR04_07415 PF01116 Fructose-bisphosphate aldolase class-II IR04_07425 PF05552 Conserved TM helix IR04_07425 PF00924 Mechanosensitive ion channel IR04_07430 PF01810 LysE type translocator IR04_07435 PF03466 LysR substrate binding domain IR04_07435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_07440 PF04402 Protein of unknown function (DUF541) IR04_07445 PF02887 Pyruvate kinase, alpha/beta domain IR04_07445 PF00224 Pyruvate kinase, barrel domain IR04_07450 PF00455 DeoR C terminal sensor domain IR04_07450 PF08220 DeoR-like helix-turn-helix domain IR04_07455 PF01380 SIS domain IR04_07460 PF03480 Bacterial extracellular solute-binding protein, family 7 IR04_07505 PF01527 Transposase IR04_07510 PF12833 Helix-turn-helix domain IR04_07520 PF08668 HDOD domain IR04_07520 PF00563 EAL domain IR04_07525 PF00589 Phage integrase family IR04_07525 PF13356 Arm DNA-binding domain IR04_07535 PF04545 Sigma-70, region 4 IR04_07535 PF00140 Sigma-70 factor, region 1.2 IR04_07535 PF03979 Sigma-70 factor, region 1.1 IR04_07535 PF04546 Sigma-70, non-essential region IR04_07535 PF04542 Sigma-70 region 2 IR04_07535 PF04539 Sigma-70 region 3 IR04_07540 PF08278 DNA primase DnaG DnaB-binding IR04_07540 PF08275 DNA primase catalytic core, N-terminal domain IR04_07540 PF01807 CHC2 zinc finger IR04_07540 PF10410 DnaB-helicase binding domain of primase IR04_07545 PF09424 Yqey-like protein IR04_07550 PF01165 Ribosomal protein S21 IR04_07555 PF00814 Glycoprotease family IR04_07560 PF00561 alpha/beta hydrolase fold IR04_07565 PF02660 Glycerol-3-phosphate acyltransferase IR04_07570 PF02152 Dihydroneopterin aldolase IR04_07575 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IR04_07580 PF02673 Bacitracin resistance protein BacA IR04_07585 PF04977 Septum formation initiator IR04_07590 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IR04_07595 PF02542 YgbB family IR04_07600 PF01142 tRNA pseudouridine synthase D (TruD) IR04_07605 PF01975 Survival protein SurE IR04_07615 PF01476 LysM domain IR04_07615 PF01551 Peptidase family M23 IR04_07625 PF00488 MutS domain V IR04_07625 PF05190 MutS family domain IV IR04_07625 PF05192 MutS domain III IR04_07625 PF01624 MutS domain I IR04_07625 PF05188 MutS domain II IR04_07630 PF00291 Pyridoxal-phosphate dependent enzyme IR04_07640 PF00528 Binding-protein-dependent transport system inner membrane component IR04_07645 PF00528 Binding-protein-dependent transport system inner membrane component IR04_07650 PF00005 ABC transporter IR04_07650 PF12857 TOBE-like domain IR04_07655 PF02464 Competence-damaged protein IR04_07660 PF00154 recA bacterial DNA recombination protein IR04_07665 PF02631 RecX family IR04_07670 PF02272 DHHA1 domain IR04_07670 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IR04_07670 PF01411 tRNA synthetases class II (A) IR04_07675 PF13840 ACT domain IR04_07675 PF00696 Amino acid kinase family IR04_07675 PF01842 ACT domain IR04_07680 PF02599 Global regulator protein family IR04_07730 PF04277 Oxaloacetate decarboxylase, gamma chain IR04_07735 PF00364 Biotin-requiring enzyme IR04_07735 PF00682 HMGL-like IR04_07735 PF02436 Conserved carboxylase domain IR04_07740 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit IR04_07750 PF09335 SNARE associated Golgi protein IR04_07755 PF05193 Peptidase M16 inactive domain IR04_07755 PF00675 Insulinase (Peptidase family M16) IR04_07760 PF04262 Glutamate-cysteine ligase IR04_07765 PF02664 S-Ribosylhomocysteinase (LuxS) IR04_07770 PF03471 Transporter associated domain IR04_07770 PF01595 Cyclin M transmembrane N-terminal domain IR04_07770 PF00571 CBS domain IR04_07775 PF01578 Cytochrome C assembly protein IR04_07780 PF02978 Signal peptide binding domain IR04_07780 PF02881 SRP54-type protein, helical bundle domain IR04_07780 PF00448 SRP54-type protein, GTPase domain IR04_07785 PF00886 Ribosomal protein S16 IR04_07790 PF01782 RimM N-terminal domain IR04_07790 PF05239 PRC-barrel domain IR04_07795 PF01746 tRNA (Guanine-1)-methyltransferase IR04_07800 PF01245 Ribosomal protein L19 IR04_07805 PF13180 PDZ domain IR04_07820 PF03969 AFG1-like ATPase IR04_07825 PF00572 Ribosomal protein L13 IR04_07830 PF00380 Ribosomal protein S9/S16 IR04_07835 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IR04_07835 PF00355 Rieske [2Fe-2S] domain IR04_07845 PF02167 Cytochrome C1 family IR04_07850 PF00043 Glutathione S-transferase, C-terminal domain IR04_07850 PF02798 Glutathione S-transferase, N-terminal domain IR04_07855 PF04386 Stringent starvation protein B IR04_07860 PF04972 BON domain IR04_07865 PF13580 SIS domain IR04_07870 PF02021 Uncharacterised protein family UPF0102 IR04_07875 PF04348 LppC putative lipoprotein IR04_07880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IR04_07885 PF00440 Bacterial regulatory proteins, tetR family IR04_07890 PF00156 Phosphoribosyl transferase domain IR04_07895 PF00484 Carbonic anhydrase IR04_07900 PF00916 Sulfate permease family IR04_07900 PF01740 STAS domain IR04_07905 PF00005 ABC transporter IR04_07910 PF01061 ABC-2 type transporter IR04_07915 PF02569 Pantoate-beta-alanine ligase IR04_07920 PF02548 Ketopantoate hydroxymethyltransferase IR04_07925 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IR04_07930 PF12627 Probable RNA and SrmB- binding site of polymerase A IR04_07930 PF01743 Poly A polymerase head domain IR04_07930 PF12626 Polymerase A arginine-rich C-terminus IR04_07935 PF00749 tRNA synthetases class I (E and Q), catalytic domain IR04_07940 PF01258 Prokaryotic dksA/traR C4-type zinc finger IR04_07945 PF17746 SfsA N-terminal OB domain IR04_07945 PF03749 Sugar fermentation stimulation protein RE domain IR04_07955 PF00270 DEAD/DEAH box helicase IR04_07955 PF08482 ATP-dependent helicase C-terminal IR04_07955 PF04408 Helicase associated domain (HA2) IR04_07955 PF00271 Helicase conserved C-terminal domain IR04_07960 PF14814 Bifunctional transglycosylase second domain IR04_07960 PF00905 Penicillin binding protein transpeptidase domain IR04_07960 PF00912 Transglycosylase IR04_07965 PF01734 Patatin-like phospholipase IR04_07970 PF11791 Aconitate B N-terminal domain IR04_07970 PF06434 Aconitate hydratase 2 N-terminus IR04_07970 PF00330 Aconitase family (aconitate hydratase) IR04_07975 PF06062 Uncharacterised protein family (UPF0231) IR04_07980 PF00543 Nitrogen regulatory protein P-II IR04_07985 PF00909 Ammonium Transporter Family IR04_07990 PF13416 Bacterial extracellular solute-binding protein IR04_08000 PF08402 TOBE domain IR04_08000 PF00005 ABC transporter IR04_08005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IR04_08005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IR04_08005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IR04_08005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IR04_08010 PF06165 Glycosyltransferase family 36 IR04_08010 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain IR04_08015 PF02838 Glycosyl hydrolase family 20, domain 2 IR04_08015 PF00728 Glycosyl hydrolase family 20, catalytic domain IR04_08020 PF01869 BadF/BadG/BcrA/BcrD ATPase family IR04_08030 PF00005 ABC transporter IR04_08030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IR04_08035 PF00005 ABC transporter IR04_08035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IR04_08040 PF12911 N-terminal TM domain of oligopeptide transport permease C IR04_08040 PF00528 Binding-protein-dependent transport system inner membrane component IR04_08045 PF00528 Binding-protein-dependent transport system inner membrane component IR04_08050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IR04_08055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_08055 PF00512 His Kinase A (phospho-acceptor) domain IR04_08055 PF00072 Response regulator receiver domain IR04_08055 PF09308 LuxQ, periplasmic IR04_08060 PF08468 Methyltransferase small domain N-terminal IR04_08060 PF05175 Methyltransferase small domain IR04_08065 PF01594 AI-2E family transporter IR04_08070 PF00202 Aminotransferase class-III IR04_08080 PF01521 Iron-sulphur cluster biosynthesis IR04_08090 PF00873 AcrB/AcrD/AcrF family IR04_08095 PF01551 Peptidase family M23 IR04_08095 PF04225 Opacity-associated protein A LysM-like domain IR04_08100 PF00579 tRNA synthetases class I (W and Y) IR04_08100 PF01479 S4 domain IR04_08105 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family IR04_08110 PF13609 Gram-negative porin IR04_08115 PF03449 Transcription elongation factor, N-terminal IR04_08115 PF01272 Transcription elongation factor, GreA/GreB, C-term IR04_08120 PF01985 CRS1 / YhbY (CRM) domain IR04_08125 PF01728 FtsJ-like methyltransferase IR04_08130 PF00004 ATPase family associated with various cellular activities (AAA) IR04_08130 PF17862 AAA+ lid domain IR04_08130 PF01434 Peptidase family M41 IR04_08130 PF06480 FtsH Extracellular IR04_08135 PF00809 Pterin binding enzyme IR04_08140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IR04_08140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IR04_08140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IR04_08140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IR04_08145 PF03840 Preprotein translocase SecG subunit IR04_08160 PF17384 RimP C-terminal SH3 domain IR04_08160 PF02576 RimP N-terminal domain IR04_08165 PF08529 NusA N-terminal domain IR04_08165 PF00575 S1 RNA binding domain IR04_08165 PF13184 NusA-like KH domain IR04_08170 PF11987 Translation-initiation factor 2 IR04_08170 PF08364 Bacterial translation initiation factor IF-2 associated region IR04_08170 PF04760 Translation initiation factor IF-2, N-terminal region IR04_08170 PF00009 Elongation factor Tu GTP binding domain IR04_08175 PF02033 Ribosome-binding factor A IR04_08180 PF01509 TruB family pseudouridylate synthase (N terminal domain) IR04_08180 PF16198 tRNA pseudouridylate synthase B C-terminal domain IR04_08180 PF09157 Pseudouridine synthase II TruB, C-terminal IR04_08185 PF00312 Ribosomal protein S15 IR04_08190 PF00575 S1 RNA binding domain IR04_08190 PF03725 3' exoribonuclease family, domain 2 IR04_08190 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IR04_08190 PF00013 KH domain IR04_08190 PF01138 3' exoribonuclease family, domain 1 IR04_08195 PF13181 Tetratricopeptide repeat IR04_08195 PF07719 Tetratricopeptide repeat IR04_08220 PF00563 EAL domain IR04_08220 PF03707 Bacterial signalling protein N terminal repeat IR04_08220 PF00990 Diguanylate cyclase, GGDEF domain IR04_08230 PF13508 Acetyltransferase (GNAT) domain IR04_08245 PF03707 Bacterial signalling protein N terminal repeat IR04_08245 PF00563 EAL domain IR04_08245 PF00990 Diguanylate cyclase, GGDEF domain IR04_08285 PF13700 Domain of unknown function (DUF4158) IR04_08285 PF01526 Tn3 transposase DDE domain IR04_08310 PF07690 Major Facilitator Superfamily IR04_08315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_08315 PF03466 LysR substrate binding domain IR04_08325 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase IR04_08330 PF01636 Phosphotransferase enzyme family IR04_08335 PF00809 Pterin binding enzyme IR04_08345 PF00872 Transposase, Mutator family IR04_08355 PF11799 impB/mucB/samB family C-terminal domain IR04_08355 PF00817 impB/mucB/samB family IR04_08355 PF13438 Domain of unknown function (DUF4113) IR04_08360 PF00717 Peptidase S24-like IR04_08370 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IR04_08370 PF00929 Exonuclease IR04_08370 PF11490 DNA polymerase III polC-type N-terminus II IR04_08370 PF14579 Helix-hairpin-helix motif IR04_08370 PF02811 PHP domain IR04_08370 PF07733 Bacterial DNA polymerase III alpha NTPase domain IR04_08495 PF13098 Thioredoxin-like domain IR04_08495 PF10411 Disulfide bond isomerase protein N-terminus IR04_08510 PF10502 Signal peptidase, peptidase S26 IR04_08520 PF06834 TraU protein IR04_08525 PF06986 Type-1V conjugative transfer system mating pair stabilisation IR04_08535 PF01695 IstB-like ATP binding protein IR04_08540 PF00665 Integrase core domain IR04_08550 PF04231 Endonuclease I IR04_08565 PF00436 Single-strand binding protein family IR04_08585 PF07728 AAA domain (dynein-related subfamily) IR04_08605 PF00092 von Willebrand factor type A domain IR04_08610 PF04002 RadC-like JAB domain IR04_08635 PF12833 Helix-turn-helix domain IR04_08655 PF00186 Dihydrofolate reductase IR04_08660 PF13495 Phage integrase, N-terminal SAM-like domain IR04_08660 PF00589 Phage integrase family IR04_08670 PF06122 Conjugative relaxosome accessory transposon protein IR04_08715 PF01381 Helix-turn-helix IR04_08715 PF00717 Peptidase S24-like IR04_08720 PF03144 Elongation factor Tu domain 2 IR04_08720 PF16658 Class II release factor RF3, C-terminal domain IR04_08720 PF00009 Elongation factor Tu GTP binding domain IR04_08725 PF00271 Helicase conserved C-terminal domain IR04_08725 PF00270 DEAD/DEAH box helicase IR04_08730 PF05175 Methyltransferase small domain IR04_08735 PF05525 Branched-chain amino acid transport protein IR04_08740 PF00472 RF-1 domain IR04_08740 PF03462 PCRF domain IR04_08745 PF01336 OB-fold nucleic acid binding domain IR04_08745 PF00152 tRNA synthetases class II (D, K and N) IR04_08750 PF02954 Bacterial regulatory protein, Fis family IR04_08750 PF00158 Sigma-54 interaction domain IR04_08750 PF00072 Response regulator receiver domain IR04_08760 PF00248 Aldo/keto reductase family IR04_08765 PF02976 DNA mismatch repair enzyme MutH IR04_08775 PF00293 NUDIX domain IR04_08780 PF05524 PEP-utilising enzyme, N-terminal IR04_08780 PF01590 GAF domain IR04_08780 PF02896 PEP-utilising enzyme, TIM barrel domain IR04_08780 PF00391 PEP-utilising enzyme, mobile domain IR04_08785 PF01925 Sulfite exporter TauE/SafE IR04_08790 PF01790 Prolipoprotein diacylglyceryl transferase IR04_08795 PF00303 Thymidylate synthase IR04_08805 PF03466 LysR substrate binding domain IR04_08805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_08810 PF01022 Bacterial regulatory protein, arsR family IR04_08815 PF01649 Ribosomal protein S20 IR04_08820 PF03023 Lipid II flippase MurJ IR04_08825 PF01687 Riboflavin kinase IR04_08825 PF06574 FAD synthetase IR04_08830 PF00133 tRNA synthetases class I (I, L, M and V) IR04_08830 PF08264 Anticodon-binding domain of tRNA IR04_08830 PF06827 Zinc finger found in FPG and IleRS IR04_08835 PF01252 Signal peptidase (SPase) II IR04_08840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IR04_08845 PF02401 LytB protein IR04_08850 PF02554 Carbon starvation protein CstA IR04_08865 PF13580 SIS domain IR04_08870 PF03702 Anhydro-N-acetylmuramic acid kinase IR04_08875 PF00933 Glycosyl hydrolase family 3 N terminal domain IR04_08880 PF04397 LytTr DNA-binding domain IR04_08880 PF00072 Response regulator receiver domain IR04_08885 PF06580 Histidine kinase IR04_08885 PF07694 5TMR of 5TMR-LYT IR04_08890 PF00793 DAHP synthetase I family IR04_08895 PF02153 Prephenate dehydrogenase IR04_08895 PF01817 Chorismate mutase type II IR04_08900 PF07238 PilZ domain IR04_08905 PF12848 ABC transporter IR04_08905 PF00005 ABC transporter IR04_08910 PF14718 Soluble lytic murein transglycosylase L domain IR04_08910 PF01464 Transglycosylase SLT domain IR04_08915 PF01371 Trp repressor protein IR04_08920 PF01931 Protein of unknown function DUF84 IR04_08925 PF00990 Diguanylate cyclase, GGDEF domain IR04_08925 PF00563 EAL domain IR04_08930 PF13416 Bacterial extracellular solute-binding protein IR04_08935 PF01817 Chorismate mutase type II IR04_08935 PF00800 Prephenate dehydratase IR04_08940 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IR04_08945 PF13525 Outer membrane lipoprotein IR04_08950 PF01479 S4 domain IR04_08950 PF00849 RNA pseudouridylate synthase IR04_08960 PF07724 AAA domain (Cdc48 subfamily) IR04_08960 PF00004 ATPase family associated with various cellular activities (AAA) IR04_08960 PF02861 Clp amino terminal domain, pathogenicity island component IR04_08960 PF17871 AAA lid domain IR04_08960 PF10431 C-terminal, D2-small domain, of ClpB protein IR04_08995 PF00881 Nitroreductase family IR04_09000 PF00037 4Fe-4S binding domain IR04_09010 PF04381 Putative exonuclease, RdgC IR04_09015 PF00072 Response regulator receiver domain IR04_09015 PF00486 Transcriptional regulatory protein, C terminal IR04_09020 PF11808 Phosphate regulon sensor protein PhoR IR04_09020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_09020 PF00512 His Kinase A (phospho-acceptor) domain IR04_09020 PF00989 PAS fold IR04_09025 PF12849 PBP superfamily domain IR04_09030 PF02541 Ppx/GppA phosphatase family IR04_09035 PF13089 Polyphosphate kinase N-terminal domain IR04_09035 PF02503 Polyphosphate kinase middle domain IR04_09035 PF17941 Polyphosphate kinase C-terminal domain 1 IR04_09035 PF13090 Polyphosphate kinase C-terminal domain 2 IR04_09040 PF00528 Binding-protein-dependent transport system inner membrane component IR04_09045 PF00528 Binding-protein-dependent transport system inner membrane component IR04_09050 PF00005 ABC transporter IR04_09055 PF01895 PhoU domain IR04_09060 PF03976 Polyphosphate kinase 2 (PPK2) IR04_09065 PF03932 CutC family IR04_09070 PF10417 C-terminal domain of 1-Cys peroxiredoxin IR04_09070 PF00578 AhpC/TSA family IR04_09075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_09075 PF03466 LysR substrate binding domain IR04_09080 PF01274 Malate synthase IR04_09085 PF00463 Isocitrate lyase family IR04_09090 PF00571 CBS domain IR04_09095 PF02547 Queuosine biosynthesis protein IR04_09100 PF01702 Queuine tRNA-ribosyltransferase IR04_09105 PF02699 Preprotein translocase subunit IR04_09110 PF02355 Protein export membrane protein IR04_09110 PF13721 SecD export protein N-terminal TM region IR04_09110 PF07549 SecD/SecF GG Motif IR04_09115 PF07549 SecD/SecF GG Motif IR04_09115 PF02355 Protein export membrane protein IR04_09120 PF00459 Inositol monophosphatase family IR04_09125 PF00588 SpoU rRNA Methylase family IR04_09130 PF02082 Transcriptional regulator IR04_09135 PF00266 Aminotransferase class-V IR04_09140 PF01592 NifU-like N terminal domain IR04_09145 PF01521 Iron-sulphur cluster biosynthesis IR04_09150 PF07743 HSCB C-terminal oligomerisation domain IR04_09150 PF00226 DnaJ domain IR04_09155 PF00012 Hsp70 protein IR04_09160 PF00111 2Fe-2S iron-sulfur cluster binding domain IR04_09165 PF04384 Iron-sulphur cluster assembly IR04_09170 PF12404 Peptidase IR04_09170 PF00883 Cytosol aminopeptidase family, catalytic domain IR04_09175 PF00334 Nucleoside diphosphate kinase IR04_09180 PF04055 Radical SAM superfamily IR04_09185 PF13464 Domain of unknown function (DUF4115) IR04_09190 PF04551 GcpE protein IR04_09195 PF03129 Anticodon binding domain IR04_09195 PF13393 Histidyl-tRNA synthetase IR04_09200 PF09976 Tetratricopeptide repeat-like domain IR04_09205 PF13360 PQQ-like domain IR04_09210 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IR04_09210 PF01926 50S ribosome-binding GTPase IR04_09225 PF13742 OB-fold nucleic acid binding domain IR04_09225 PF02601 Exonuclease VII, large subunit IR04_09230 PF00571 CBS domain IR04_09230 PF00478 IMP dehydrogenase / GMP reductase domain IR04_09235 PF02540 NAD synthase IR04_09235 PF00958 GMP synthase C terminal domain IR04_09235 PF00117 Glutamine amidotransferase class-I IR04_09245 PF06483 Chitinase C IR04_09245 PF00704 Glycosyl hydrolases family 18 IR04_09250 PF01184 GPR1/FUN34/yaaH family IR04_09255 PF00857 Isochorismatase family IR04_09255 PF00550 Phosphopantetheine attachment site IR04_09260 PF13193 AMP-binding enzyme C-terminal domain IR04_09260 PF00501 AMP-binding enzyme IR04_09265 PF00425 chorismate binding enzyme IR04_09280 PF01497 Periplasmic binding protein IR04_09285 PF01032 FecCD transport family IR04_09290 PF01032 FecCD transport family IR04_09295 PF00005 ABC transporter IR04_09300 PF01648 4'-phosphopantetheinyl transferase superfamily IR04_09300 PF17837 4'-phosphopantetheinyl transferase N-terminal domain IR04_09305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_09305 PF03466 LysR substrate binding domain IR04_09310 PF14864 Alkyl sulfatase C-terminal IR04_09310 PF00753 Metallo-beta-lactamase superfamily IR04_09310 PF14863 Alkyl sulfatase dimerisation IR04_09315 PF01235 Sodium:alanine symporter family IR04_09320 PF01266 FAD dependent oxidoreductase IR04_09325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_09325 PF03466 LysR substrate binding domain IR04_09340 PF00072 Response regulator receiver domain IR04_09340 PF12431 Transcriptional regulator IR04_09345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_09345 PF17203 Single cache domain 3 IR04_09350 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit IR04_09355 PF00364 Biotin-requiring enzyme IR04_09355 PF02436 Conserved carboxylase domain IR04_09355 PF00682 HMGL-like IR04_09360 PF04277 Oxaloacetate decarboxylase, gamma chain IR04_09365 PF03390 2-hydroxycarboxylate transporter family IR04_09370 PF08218 Citrate lyase ligase C-terminal domain IR04_09375 PF06857 Malonate decarboxylase delta subunit (MdcD) IR04_09380 PF03328 HpcH/HpaI aldolase/citrate lyase family IR04_09385 PF04223 Citrate lyase, alpha subunit (CitF) IR04_09390 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase IR04_09395 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase IR04_09405 PF00588 SpoU rRNA Methylase family IR04_09405 PF08032 RNA 2'-O ribose methyltransferase substrate binding IR04_09410 PF00037 4Fe-4S binding domain IR04_09410 PF11953 Domain of unknown function (DUF3470) IR04_09465 PF13737 Transposase DDE domain IR04_09475 PF00171 Aldehyde dehydrogenase family IR04_09480 PF12561 ToxR activated gene A lipoprotein domain IR04_09480 PF00041 Fibronectin type III domain IR04_09495 PF08534 Redoxin IR04_09500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_09505 PF00486 Transcriptional regulatory protein, C terminal IR04_09515 PF07963 Prokaryotic N-terminal methylation motif IR04_09515 PF05946 Toxin-coregulated pilus subunit TcpA IR04_09525 PF10671 Toxin co-regulated pilus biosynthesis protein Q IR04_09545 PF17456 Toxin-coregulated pilus protein S IR04_09550 PF00437 Type II/IV secretion system protein IR04_09555 PF00482 Type II secretion system (T2SS), protein F IR04_09560 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F IR04_09565 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family IR04_09570 PF06750 Bacterial Peptidase A24 N-terminal domain IR04_09570 PF01478 Type IV leader peptidase family IR04_09575 PF02743 Cache domain IR04_09575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_09575 PF00672 HAMP domain IR04_09595 PF01551 Peptidase family M23 IR04_09595 PF04225 Opacity-associated protein A LysM-like domain IR04_09605 PF13402 Peptidase M60, enhancin and enhancin-like IR04_09605 PF13322 Domain of unknown function (DUF4092) IR04_09605 PF17291 N-terminal domain of M60-like peptidases IR04_09615 PF13356 Arm DNA-binding domain IR04_09615 PF00589 Phage integrase family IR04_09620 PF01668 SmpB protein IR04_09625 PF03364 Polyketide cyclase / dehydrase and lipid transport IR04_09630 PF03658 RnfH family Ubiquitin IR04_09635 PF04355 SmpA / OmlA family IR04_09640 PF02463 RecF/RecN/SMC N terminal domain IR04_09645 PF01513 ATP-NAD kinase IR04_09650 PF01025 GrpE IR04_09655 PF00012 Hsp70 protein IR04_09660 PF00226 DnaJ domain IR04_09660 PF01556 DnaJ C terminal domain IR04_09660 PF00684 DnaJ central domain IR04_09665 PF00114 Pilin (bacterial filament) IR04_09665 PF07963 Prokaryotic N-terminal methylation motif IR04_09690 PF03806 AbgT putative transporter family IR04_09695 PF14437 MafB19-like deaminase IR04_09705 PF01464 Transglycosylase SLT domain IR04_09705 PF00497 Bacterial extracellular solute-binding proteins, family 3 IR04_09720 PF01797 Transposase IS200 like IR04_09730 PF06786 Uncharacterised protein family (UPF0253) IR04_09740 PF04073 Aminoacyl-tRNA editing domain IR04_09740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IR04_09740 PF03129 Anticodon binding domain IR04_09745 PF18389 TrmO C-terminal domain IR04_09745 PF01980 tRNA-methyltransferase O IR04_09750 PF01197 Ribosomal protein L31 IR04_09755 PF00444 Ribosomal protein L36 IR04_09760 PF03806 AbgT putative transporter family IR04_09765 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IR04_09775 PF13302 Acetyltransferase (GNAT) domain IR04_09790 PF04287 tRNA pseudouridine synthase C IR04_09795 PF00849 RNA pseudouridylate synthase IR04_09800 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IR04_09800 PF02779 Transketolase, pyrimidine binding domain IR04_09800 PF02780 Transketolase, C-terminal domain IR04_09805 PF00348 Polyprenyl synthetase IR04_09810 PF02609 Exonuclease VII small subunit IR04_09815 PF01618 MotA/TolQ/ExbB proton channel family IR04_09825 PF02926 THUMP domain IR04_09825 PF02568 Thiamine biosynthesis protein (ThiI) IR04_09835 PF03466 LysR substrate binding domain IR04_09835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_09840 PF04241 Protein of unknown function (DUF423) IR04_09850 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases IR04_09850 PF03641 Possible lysine decarboxylase IR04_09850 PF11892 Domain of unknown function (DUF3412) IR04_09855 PF00990 Diguanylate cyclase, GGDEF domain IR04_09865 PF14489 QueF-like protein IR04_09865 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IR04_09870 PF07348 Syd protein (SUKH-2) IR04_09875 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) IR04_09880 PF03180 NLPA lipoprotein IR04_09885 PF00528 Binding-protein-dependent transport system inner membrane component IR04_09890 PF09383 NIL domain IR04_09890 PF00005 ABC transporter IR04_09900 PF00356 Bacterial regulatory proteins, lacI family IR04_09905 PF00367 phosphotransferase system, EIIB IR04_09905 PF02378 Phosphotransferase system, EIIC IR04_09910 PF16657 Maltogenic Amylase, C-terminal domain IR04_09910 PF00128 Alpha amylase, catalytic domain IR04_09940 PF01451 Low molecular weight phosphotyrosine protein phosphatase IR04_09945 PF02350 UDP-N-acetylglucosamine 2-epimerase IR04_09950 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IR04_09950 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IR04_09950 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IR04_09955 PF12464 Maltose acetyltransferase IR04_09955 PF14602 Hexapeptide repeat of succinyl-transferase IR04_09975 PF00132 Bacterial transferase hexapeptide (six repeats) IR04_09985 PF00862 Sucrose synthase IR04_09985 PF00534 Glycosyl transferases group 1 IR04_09995 PF03808 Glycosyl transferase WecB/TagA/CpsF family IR04_10010 PF17945 Beta/Gamma crystallin IR04_10010 PF12561 ToxR activated gene A lipoprotein domain IR04_10025 PF02397 Bacterial sugar transferase IR04_10035 PF18412 Outer-membrane lipoprotein Wza C-terminal domain IR04_10035 PF10531 SLBB domain IR04_10035 PF02563 Polysaccharide biosynthesis/export protein IR04_10040 PF13614 AAA domain IR04_10040 PF02706 Chain length determinant protein IR04_10040 PF13807 G-rich domain on putative tyrosine kinase IR04_10060 PF00464 Serine hydroxymethyltransferase IR04_10070 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family IR04_10070 PF04055 Radical SAM superfamily IR04_10075 PF03099 Biotin/lipoate A/B protein ligase family IR04_10080 PF04359 Protein of unknown function (DUF493) IR04_10085 PF00768 D-alanyl-D-alanine carboxypeptidase IR04_10085 PF07943 Penicillin-binding protein 5, C-terminal domain IR04_10090 PF05036 Sporulation related domain IR04_10090 PF03330 Lytic transglycolase IR04_10095 PF01098 Cell cycle protein IR04_10100 PF03717 Penicillin-binding Protein dimerisation domain IR04_10100 PF00905 Penicillin binding protein transpeptidase domain IR04_10105 PF02590 Predicted SPOUT methyltransferase IR04_10115 PF06144 DNA polymerase III, delta subunit IR04_10115 PF14840 Processivity clamp loader gamma complex DNA pol III C-term IR04_10120 PF04390 Lipopolysaccharide-assembly IR04_10125 PF13603 Leucyl-tRNA synthetase, Domain 2 IR04_10125 PF00133 tRNA synthetases class I (I, L, M and V) IR04_10125 PF08264 Anticodon-binding domain of tRNA IR04_10130 PF07295 Zinc-ribbon containing domain IR04_10135 PF00795 Carbon-nitrogen hydrolase IR04_10140 PF03471 Transporter associated domain IR04_10140 PF00571 CBS domain IR04_10145 PF02130 Uncharacterized protein family UPF0054 IR04_10150 PF02562 PhoH-like protein IR04_10155 PF00919 Uncharacterized protein family UPF0004 IR04_10155 PF04055 Radical SAM superfamily IR04_10155 PF01938 TRAM domain IR04_10160 PF01494 FAD binding domain IR04_10165 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IR04_10170 PF02896 PEP-utilising enzyme, TIM barrel domain IR04_10170 PF00391 PEP-utilising enzyme, mobile domain IR04_10170 PF05524 PEP-utilising enzyme, N-terminal IR04_10175 PF00381 PTS HPr component phosphorylation site IR04_10180 PF00291 Pyridoxal-phosphate dependent enzyme IR04_10190 PF04354 ZipA, C-terminal FtsZ-binding domain IR04_10195 PF03120 NAD-dependent DNA ligase OB-fold domain IR04_10195 PF01653 NAD-dependent DNA ligase adenylation domain IR04_10195 PF00533 BRCA1 C Terminus (BRCT) domain IR04_10195 PF12826 Helix-hairpin-helix motif IR04_10195 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IR04_10200 PF13609 Gram-negative porin IR04_10210 PF13411 MerR HTH family regulatory protein IR04_10215 PF01957 NfeD-like C-terminal, partner-binding IR04_10220 PF16200 C-terminal region of band_7 IR04_10220 PF01145 SPFH domain / Band 7 family IR04_10225 PF00085 Thioredoxin IR04_10235 PF00106 short chain dehydrogenase IR04_10240 PF08338 Domain of unknown function (DUF1731) IR04_10240 PF01370 NAD dependent epimerase/dehydratase family IR04_10245 PF12850 Calcineurin-like phosphoesterase superfamily domain IR04_10255 PF17323 Trans-membrane regulatory protein ToxS IR04_10260 PF00486 Transcriptional regulatory protein, C terminal IR04_10265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_10265 PF00183 Hsp90 protein IR04_10270 PF05191 Adenylate kinase, active site lid IR04_10275 PF00762 Ferrochelatase IR04_10280 PF00854 POT family IR04_10285 PF02357 Transcription termination factor nusG IR04_10290 PF13537 Glutamine amidotransferase domain IR04_10290 PF00733 Asparagine synthase IR04_10295 PF00999 Sodium/hydrogen exchanger family IR04_10295 PF02254 TrkA-N domain IR04_10300 PF00480 ROK family IR04_10300 PF01047 MarR family IR04_10305 PF01979 Amidohydrolase family IR04_10310 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IR04_10310 PF02378 Phosphotransferase system, EIIC IR04_10310 PF00367 phosphotransferase system, EIIB IR04_10315 PF00749 tRNA synthetases class I (E and Q), catalytic domain IR04_10315 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IR04_10325 PF01416 tRNA pseudouridine synthase IR04_10330 PF17848 Acetyl-coA carboxylase zinc finger domain IR04_10330 PF01039 Carboxyl transferase domain IR04_10335 PF08245 Mur ligase middle domain IR04_10335 PF02875 Mur ligase family, glutamate ligase domain IR04_10340 PF05036 Sporulation related domain IR04_10345 PF02674 Colicin V production protein IR04_10350 PF00156 Phosphoribosyl transferase domain IR04_10355 PF03553 Na+/H+ antiporter family IR04_10355 PF13726 Na+-H+ antiporter family IR04_10360 PF00929 Exonuclease IR04_10370 PF00691 OmpA family IR04_10370 PF18393 MotY N-terminal domain IR04_10375 PF10952 Protein of unknown function (DUF2753) IR04_10380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IR04_10385 PF00633 Helix-hairpin-helix motif IR04_10385 PF10576 Iron-sulfur binding domain of endonuclease III IR04_10385 PF00730 HhH-GPD superfamily base excision DNA repair protein IR04_10390 PF02508 Rnf-Nqr subunit, membrane protein IR04_10395 PF04205 FMN-binding domain IR04_10400 PF03116 NQR2, RnfD, RnfE family IR04_10410 PF04060 Putative Fe-S cluster IR04_10415 PF02508 Rnf-Nqr subunit, membrane protein IR04_10430 PF04851 Type III restriction enzyme, res subunit IR04_10430 PF12344 Ultra-violet resistance protein B IR04_10430 PF02151 UvrB/uvrC motif IR04_10430 PF17757 UvrB interaction domain IR04_10430 PF00271 Helicase conserved C-terminal domain IR04_10440 PF00158 Sigma-54 interaction domain IR04_10440 PF02954 Bacterial regulatory protein, Fis family IR04_10440 PF00072 Response regulator receiver domain IR04_10445 PF01627 Hpt domain IR04_10450 PF01933 Uncharacterised protein family UPF0052 IR04_10455 PF04055 Radical SAM superfamily IR04_10455 PF06463 Molybdenum Cofactor Synthesis C IR04_10460 PF00994 Probable molybdopterin binding domain IR04_10465 PF01967 MoaC family IR04_10470 PF02597 ThiS family IR04_10475 PF02391 MoaE protein IR04_10480 PF00990 Diguanylate cyclase, GGDEF domain IR04_10480 PF07694 5TMR of 5TMR-LYT IR04_10485 PF07085 DRTGG domain IR04_10485 PF00392 Bacterial regulatory proteins, gntR family IR04_10485 PF00571 CBS domain IR04_10485 PF03061 Thioesterase superfamily IR04_10490 PF00403 Heavy-metal-associated domain IR04_10495 PF01048 Phosphorylase superfamily IR04_10505 PF09334 tRNA synthetases class I (M) IR04_10505 PF01588 Putative tRNA binding domain IR04_10510 PF10609 NUBPL iron-transfer P-loop NTPase IR04_10520 PF00485 Phosphoribulokinase / Uridine kinase family IR04_10525 PF05170 AsmA family IR04_10530 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IR04_10530 PF12557 Cob(I)alamin adenosyltransferase N terminal IR04_10535 PF01451 Low molecular weight phosphotyrosine protein phosphatase IR04_10540 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IR04_10545 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IR04_10555 PF08281 Sigma-70, region 4 IR04_10555 PF04542 Sigma-70 region 2 IR04_10570 PF02803 Thiolase, C-terminal domain IR04_10570 PF00108 Thiolase, N-terminal domain IR04_10575 PF00378 Enoyl-CoA hydratase/isomerase IR04_10575 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IR04_10575 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IR04_10580 PF00881 Nitroreductase family IR04_10585 PF03466 LysR substrate binding domain IR04_10585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_10590 PF00072 Response regulator receiver domain IR04_10600 PF04304 Protein of unknown function (DUF454) IR04_10605 PF00156 Phosphoribosyl transferase domain IR04_10610 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IR04_10610 PF12170 DNA polymerase III tau subunit V interacting with alpha IR04_10610 PF12169 DNA polymerase III subunits gamma and tau domain III IR04_10615 PF02575 YbaB/EbfC DNA-binding family IR04_10620 PF13662 Toprim domain IR04_10620 PF02132 RecR protein IR04_10625 PF03692 Putative zinc- or iron-chelating domain IR04_10630 PF03692 Putative zinc- or iron-chelating domain IR04_10635 PF00106 short chain dehydrogenase IR04_10640 PF01343 Peptidase family S49 IR04_10640 PF08496 Peptidase family S49 N-terminal IR04_10645 PF00291 Pyridoxal-phosphate dependent enzyme IR04_10650 PF13404 AsnC-type helix-turn-helix domain IR04_10650 PF01037 Lrp/AsnC ligand binding domain IR04_10665 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IR04_10675 PF08448 PAS fold IR04_10675 PF00990 Diguanylate cyclase, GGDEF domain IR04_10680 PF01022 Bacterial regulatory protein, arsR family IR04_10685 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IR04_10685 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IR04_10700 PF00704 Glycosyl hydrolases family 18 IR04_10700 PF06483 Chitinase C IR04_10710 PF01161 Phosphatidylethanolamine-binding protein IR04_10730 PF03481 Putative GTP-binding controlling metal-binding IR04_10730 PF01300 Telomere recombination IR04_10745 PF00072 Response regulator receiver domain IR04_10755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_10755 PF00512 His Kinase A (phospho-acceptor) domain IR04_10755 PF00989 PAS fold IR04_10755 PF13426 PAS domain IR04_10755 PF13188 PAS domain IR04_10760 PF00512 His Kinase A (phospho-acceptor) domain IR04_10760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_10765 PF13188 PAS domain IR04_10765 PF03707 Bacterial signalling protein N terminal repeat IR04_10765 PF00563 EAL domain IR04_10765 PF00990 Diguanylate cyclase, GGDEF domain IR04_10770 PF00158 Sigma-54 interaction domain IR04_10770 PF00072 Response regulator receiver domain IR04_10770 PF02954 Bacterial regulatory protein, Fis family IR04_10775 PF08448 PAS fold IR04_10775 PF13188 PAS domain IR04_10775 PF00072 Response regulator receiver domain IR04_10775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_10775 PF00512 His Kinase A (phospho-acceptor) domain IR04_10785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IR04_10790 PF00528 Binding-protein-dependent transport system inner membrane component IR04_10795 PF00528 Binding-protein-dependent transport system inner membrane component IR04_10795 PF12911 N-terminal TM domain of oligopeptide transport permease C IR04_10800 PF00005 ABC transporter IR04_10800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IR04_10805 PF00005 ABC transporter IR04_10805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IR04_10810 PF13409 Glutathione S-transferase, N-terminal domain IR04_10815 PF07085 DRTGG domain IR04_10815 PF01515 Phosphate acetyl/butaryl transferase IR04_10820 PF00871 Acetokinase family IR04_10825 PF04217 Protein of unknown function, DUF412 IR04_10830 PF09905 DNA-binding protein VF530 IR04_10840 PF02653 Branched-chain amino acid transport system / permease component IR04_10845 PF00005 ABC transporter IR04_10850 PF00990 Diguanylate cyclase, GGDEF domain IR04_10855 PF01207 Dihydrouridine synthase (Dus) IR04_10860 PF07517 SecA DEAD-like domain IR04_10860 PF02810 SEC-C motif IR04_10860 PF01043 SecA preprotein cross-linking domain IR04_10860 PF07516 SecA Wing and Scaffold domain IR04_10865 PF03548 Outer membrane lipoprotein carrier protein LolA IR04_10870 PF12002 MgsA AAA+ ATPase C terminal IR04_10870 PF16193 AAA C-terminal domain IR04_10870 PF00004 ATPase family associated with various cellular activities (AAA) IR04_10875 PF02403 Seryl-tRNA synthetase N-terminal domain IR04_10875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IR04_10880 PF00202 Aminotransferase class-III IR04_10885 PF06968 Biotin and Thiamin Synthesis associated domain IR04_10885 PF04055 Radical SAM superfamily IR04_10890 PF00155 Aminotransferase class I and II IR04_10895 PF08241 Methyltransferase domain IR04_10910 PF01435 Peptidase family M48 IR04_10920 PF00106 short chain dehydrogenase IR04_10945 PF16036 Chalcone isomerase-like IR04_10955 PF08328 Adenylosuccinate lyase C-terminal IR04_10955 PF00206 Lyase IR04_10960 PF04356 Protein of unknown function (DUF489) IR04_10970 PF00294 pfkB family carbohydrate kinase IR04_10975 PF00816 H-NS histone family IR04_10980 PF03553 Na+/H+ antiporter family IR04_10985 PF01634 ATP phosphoribosyltransferase IR04_10985 PF08029 HisG, C-terminal domain IR04_10990 PF00815 Histidinol dehydrogenase IR04_10995 PF00155 Aminotransferase class I and II IR04_11000 PF08645 Polynucleotide kinase 3 phosphatase IR04_11000 PF00475 Imidazoleglycerol-phosphate dehydratase IR04_11005 PF00117 Glutamine amidotransferase class-I IR04_11010 PF00977 Histidine biosynthesis protein IR04_11015 PF00977 Histidine biosynthesis protein IR04_11020 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase IR04_11020 PF01502 Phosphoribosyl-AMP cyclohydrolase IR04_11025 PF00849 RNA pseudouridylate synthase IR04_11030 PF03971 Monomeric isocitrate dehydrogenase IR04_11035 PF00313 'Cold-shock' DNA-binding domain IR04_11040 PF02617 ATP-dependent Clp protease adaptor protein ClpS IR04_11045 PF10431 C-terminal, D2-small domain, of ClpB protein IR04_11045 PF17871 AAA lid domain IR04_11045 PF02861 Clp amino terminal domain, pathogenicity island component IR04_11045 PF00004 ATPase family associated with various cellular activities (AAA) IR04_11045 PF07724 AAA domain (Cdc48 subfamily) IR04_11050 PF02080 TrkA-C domain IR04_11050 PF06826 Predicted Permease Membrane Region IR04_11055 PF00462 Glutaredoxin IR04_11060 PF00465 Iron-containing alcohol dehydrogenase IR04_11060 PF00171 Aldehyde dehydrogenase family IR04_11065 PF01418 Helix-turn-helix domain, rpiR family IR04_11065 PF01380 SIS domain IR04_11070 PF00282 Pyridoxal-dependent decarboxylase conserved domain IR04_11080 PF03956 Lysine exporter LysO IR04_11090 PF04994 TfoX C-terminal domain IR04_11090 PF04993 TfoX N-terminal domain IR04_11105 PF00989 PAS fold IR04_11105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_11105 PF00512 His Kinase A (phospho-acceptor) domain IR04_11115 PF00266 Aminotransferase class-V IR04_11130 PF18030 RimK PreATP-grasp domain IR04_11130 PF08443 RimK-like ATP-grasp domain IR04_11135 PF08003 Protein of unknown function (DUF1698) IR04_11140 PF13649 Methyltransferase domain IR04_11145 PF01904 Protein of unknown function DUF72 IR04_11150 PF01336 OB-fold nucleic acid binding domain IR04_11150 PF00152 tRNA synthetases class II (D, K and N) IR04_11150 PF02938 GAD domain IR04_11155 PF00265 Thymidine kinase IR04_11160 PF00375 Sodium:dicarboxylate symporter family IR04_11165 PF00290 Tryptophan synthase alpha chain IR04_11170 PF00291 Pyridoxal-phosphate dependent enzyme IR04_11175 PF00218 Indole-3-glycerol phosphate synthase IR04_11175 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IR04_11180 PF00591 Glycosyl transferase family, a/b domain IR04_11180 PF02885 Glycosyl transferase family, helical bundle domain IR04_11185 PF00117 Glutamine amidotransferase class-I IR04_11190 PF00425 chorismate binding enzyme IR04_11190 PF04715 Anthranilate synthase component I, N terminal region IR04_11195 PF08056 Tryptophan operon leader peptide IR04_11200 PF02811 PHP domain IR04_11205 PF01300 Telomere recombination IR04_11210 PF01479 S4 domain IR04_11210 PF00849 RNA pseudouridylate synthase IR04_11215 PF00005 ABC transporter IR04_11215 PF00664 ABC transporter transmembrane region IR04_11220 PF00005 ABC transporter IR04_11220 PF00664 ABC transporter transmembrane region IR04_11225 PF07992 Pyridine nucleotide-disulphide oxidoreductase IR04_11235 PF00266 Aminotransferase class-V IR04_11240 PF00990 Diguanylate cyclase, GGDEF domain IR04_11240 PF08448 PAS fold IR04_11245 PF02698 DUF218 domain IR04_11255 PF00390 Malic enzyme, N-terminal domain IR04_11255 PF03949 Malic enzyme, NAD binding domain IR04_11265 PF01259 SAICAR synthetase IR04_11285 PF13488 Glycine zipper IR04_11285 PF00691 OmpA family IR04_11305 PF01565 FAD binding domain IR04_11305 PF02913 FAD linked oxidases, C-terminal domain IR04_11305 PF13183 4Fe-4S dicluster domain IR04_11310 PF04191 Phospholipid methyltransferase IR04_11315 PF00089 Trypsin IR04_11325 PF00221 Aromatic amino acid lyase IR04_11330 PF17391 Urocanase N-terminal domain IR04_11330 PF01175 Urocanase Rossmann-like domain IR04_11330 PF17392 Urocanase C-terminal domain IR04_11335 PF00491 Arginase family IR04_11340 PF01979 Amidohydrolase family IR04_11345 PF00392 Bacterial regulatory proteins, gntR family IR04_11345 PF07702 UTRA domain IR04_11355 PF04269 Protein of unknown function, DUF440 IR04_11360 PF09285 Elongation factor P, C-terminal IR04_11360 PF08207 Elongation factor P (EF-P) KOW-like domain IR04_11360 PF01132 Elongation factor P (EF-P) OB domain IR04_11370 PF00563 EAL domain IR04_11370 PF13426 PAS domain IR04_11370 PF00990 Diguanylate cyclase, GGDEF domain IR04_11375 PF00136 DNA polymerase family B IR04_11375 PF03104 DNA polymerase family B, exonuclease domain IR04_11380 PF00196 Bacterial regulatory proteins, luxR family IR04_11380 PF00072 Response regulator receiver domain IR04_11385 PF01541 GIY-YIG catalytic domain IR04_11385 PF02151 UvrB/uvrC motif IR04_11385 PF08459 UvrC Helix-hairpin-helix N-terminal IR04_11390 PF01066 CDP-alcohol phosphatidyltransferase IR04_11415 PF00990 Diguanylate cyclase, GGDEF domain IR04_11415 PF00072 Response regulator receiver domain IR04_11425 PF01409 tRNA synthetases class II core domain (F) IR04_11425 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IR04_11430 PF03484 tRNA synthetase B5 domain IR04_11430 PF03147 Ferredoxin-fold anticodon binding domain IR04_11430 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IR04_11430 PF01588 Putative tRNA binding domain IR04_11430 PF03483 B3/4 domain IR04_11435 PF00216 Bacterial DNA-binding protein IR04_11450 PF05724 Thiopurine S-methyltransferase (TPMT) IR04_11455 PF02222 ATP-grasp domain IR04_11465 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region IR04_11465 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IR04_11470 PF04172 LrgB-like family IR04_11475 PF03788 LrgA family IR04_11480 PF00929 Exonuclease IR04_11480 PF08411 Exonuclease C-terminal IR04_11490 PF01641 SelR domain IR04_11500 PF02277 Phosphoribosyltransferase IR04_11505 PF02654 Cobalamin-5-phosphate synthase IR04_11510 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase IR04_11520 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IR04_11525 PF01032 FecCD transport family IR04_11530 PF00005 ABC transporter IR04_11545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_11545 PF17200 Single Cache domain 2 IR04_11545 PF00672 HAMP domain IR04_11560 PF00994 Probable molybdopterin binding domain IR04_11570 PF00175 Oxidoreductase NAD-binding domain IR04_11570 PF00111 2Fe-2S iron-sulfur cluster binding domain IR04_11570 PF00970 Oxidoreductase FAD-binding domain IR04_11575 PF00268 Ribonucleotide reductase, small chain IR04_11580 PF03477 ATP cone domain IR04_11580 PF02867 Ribonucleotide reductase, barrel domain IR04_11580 PF00317 Ribonucleotide reductase, all-alpha domain IR04_11590 PF00521 DNA gyrase/topoisomerase IV, subunit A IR04_11590 PF03989 DNA gyrase C-terminal domain, beta-propeller IR04_11605 PF07690 Major Facilitator Superfamily IR04_11615 PF00925 GTP cyclohydrolase II IR04_11640 PF01471 Putative peptidoglycan binding domain IR04_11640 PF03734 L,D-transpeptidase catalytic domain IR04_11645 PF05951 Bacterial protein of unknown function (DUF882) IR04_11650 PF00753 Metallo-beta-lactamase superfamily IR04_11665 PF03480 Bacterial extracellular solute-binding protein, family 7 IR04_11675 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IR04_11680 PF17200 Single Cache domain 2 IR04_11680 PF07730 Histidine kinase IR04_11685 PF00072 Response regulator receiver domain IR04_11685 PF00196 Bacterial regulatory proteins, luxR family IR04_11690 PF01047 MarR family IR04_11695 PF02028 BCCT, betaine/carnitine/choline family transporter IR04_11700 PF01522 Polysaccharide deacetylase IR04_11705 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IR04_11710 PF02378 Phosphotransferase system, EIIC IR04_11715 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit IR04_11720 PF02056 Family 4 glycosyl hydrolase IR04_11720 PF11975 Family 4 glycosyl hydrolase C-terminal domain IR04_11725 PF04794 YdjC-like protein IR04_11730 PF00356 Bacterial regulatory proteins, lacI family IR04_11735 PF13506 Glycosyl transferase family 21 IR04_11740 PF04349 Periplasmic glucan biosynthesis protein, MdoG IR04_11745 PF17200 Single Cache domain 2 IR04_11745 PF00672 HAMP domain IR04_11745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_11760 PF00155 Aminotransferase class I and II IR04_11770 PF01966 HD domain IR04_11770 PF00672 HAMP domain IR04_11775 PF08543 Phosphomethylpyrimidine kinase IR04_11780 PF01336 OB-fold nucleic acid binding domain IR04_11780 PF00152 tRNA synthetases class II (D, K and N) IR04_11785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_11785 PF00672 HAMP domain IR04_11790 PF01242 6-pyruvoyl tetrahydropterin synthase IR04_11795 PF03313 Serine dehydratase alpha chain IR04_11795 PF03315 Serine dehydratase beta chain IR04_11800 PF03222 Tryptophan/tyrosine permease family IR04_11805 PF00293 NUDIX domain IR04_11810 PF00425 chorismate binding enzyme IR04_11810 PF04715 Anthranilate synthase component I, N terminal region IR04_11825 PF04317 YcjX-like family, DUF463 IR04_11830 PF05128 Domain of unknown function (DUF697) IR04_11835 PF18024 Helix-turn-helix domain IR04_11835 PF00158 Sigma-54 interaction domain IR04_11840 PF13302 Acetyltransferase (GNAT) domain IR04_11850 PF00892 EamA-like transporter family IR04_11855 PF01168 Alanine racemase, N-terminal domain IR04_11855 PF00842 Alanine racemase, C-terminal domain IR04_11860 PF00672 HAMP domain IR04_11860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_11865 PF00939 Sodium:sulfate symporter transmembrane region IR04_11870 PF00497 Bacterial extracellular solute-binding proteins, family 3 IR04_11870 PF00512 His Kinase A (phospho-acceptor) domain IR04_11870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_11875 PF00158 Sigma-54 interaction domain IR04_11875 PF00072 Response regulator receiver domain IR04_11875 PF02954 Bacterial regulatory protein, Fis family IR04_11880 PF04393 Protein of unknown function (DUF535) IR04_11885 PF06629 MltA-interacting protein MipA IR04_11890 PF00512 His Kinase A (phospho-acceptor) domain IR04_11890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_11890 PF00672 HAMP domain IR04_11895 PF00072 Response regulator receiver domain IR04_11895 PF00486 Transcriptional regulatory protein, C terminal IR04_11915 PF13407 Periplasmic binding protein domain IR04_11920 PF00005 ABC transporter IR04_11925 PF02653 Branched-chain amino acid transport system / permease component IR04_11940 PF01970 Tripartite tricarboxylate transporter TctA family IR04_11955 PF00392 Bacterial regulatory proteins, gntR family IR04_11955 PF07729 FCD domain IR04_11965 PF00285 Citrate synthase, C-terminal domain IR04_11970 PF00330 Aconitase family (aconitate hydratase) IR04_11970 PF00694 Aconitase C-terminal domain IR04_11975 PF04303 PrpF protein IR04_11980 PF13193 AMP-binding enzyme C-terminal domain IR04_11980 PF00501 AMP-binding enzyme IR04_11980 PF16177 Acetyl-coenzyme A synthetase N-terminus IR04_11995 PF01546 Peptidase family M20/M25/M40 IR04_11995 PF07687 Peptidase dimerisation domain IR04_12005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IR04_12010 PF04209 homogentisate 1,2-dioxygenase IR04_12020 PF02798 Glutathione S-transferase, N-terminal domain IR04_12020 PF14497 Glutathione S-transferase, C-terminal domain IR04_12025 PF00072 Response regulator receiver domain IR04_12030 PF00672 HAMP domain IR04_12030 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IR04_12030 PF01627 Hpt domain IR04_12030 PF00512 His Kinase A (phospho-acceptor) domain IR04_12030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_12030 PF00072 Response regulator receiver domain IR04_12035 PF00462 Glutaredoxin IR04_12035 PF08534 Redoxin IR04_12040 PF00990 Diguanylate cyclase, GGDEF domain IR04_12045 PF10672 S-adenosylmethionine-dependent methyltransferase IR04_12045 PF17785 PUA-like domain IR04_12050 PF00708 Acylphosphatase IR04_12055 PF04358 DsrC like protein IR04_12060 PF01027 Inhibitor of apoptosis-promoting Bax1 IR04_12070 PF00528 Binding-protein-dependent transport system inner membrane component IR04_12075 PF00528 Binding-protein-dependent transport system inner membrane component IR04_12080 PF00497 Bacterial extracellular solute-binding proteins, family 3 IR04_12085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IR04_12085 PF14824 Sirohaem biosynthesis protein central IR04_12085 PF10414 Sirohaem synthase dimerisation region IR04_12095 PF04055 Radical SAM superfamily IR04_12100 PF06508 Queuosine biosynthesis protein QueC IR04_12120 PF03707 Bacterial signalling protein N terminal repeat IR04_12120 PF00990 Diguanylate cyclase, GGDEF domain IR04_12120 PF00563 EAL domain IR04_12130 PF17158 Membrane-associated sensor, integral membrane domain IR04_12130 PF00990 Diguanylate cyclase, GGDEF domain IR04_12135 PF00012 Hsp70 protein IR04_12140 PF00012 Hsp70 protein IR04_12150 PF00563 EAL domain IR04_12150 PF00990 Diguanylate cyclase, GGDEF domain IR04_12150 PF03707 Bacterial signalling protein N terminal repeat IR04_12170 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IR04_12170 PF00271 Helicase conserved C-terminal domain IR04_12170 PF04408 Helicase associated domain (HA2) IR04_12170 PF11898 Domain of unknown function (DUF3418) IR04_12170 PF00270 DEAD/DEAH box helicase IR04_12180 PF00012 Hsp70 protein IR04_12190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_12190 PF03466 LysR substrate binding domain IR04_12200 PF07690 Major Facilitator Superfamily IR04_12205 PF00875 DNA photolyase IR04_12205 PF03441 FAD binding domain of DNA photolyase IR04_12210 PF00893 Small Multidrug Resistance protein IR04_12215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_12215 PF00672 HAMP domain IR04_12230 PF01627 Hpt domain IR04_12230 PF01584 CheW-like domain IR04_12230 PF07194 P2 response regulator binding domain IR04_12230 PF02895 Signal transducing histidine kinase, homodimeric domain IR04_12230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_12235 PF01627 Hpt domain IR04_12235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_12235 PF01584 CheW-like domain IR04_12235 PF00072 Response regulator receiver domain IR04_12240 PF03705 CheR methyltransferase, all-alpha domain IR04_12240 PF01739 CheR methyltransferase, SAM binding domain IR04_12250 PF00072 Response regulator receiver domain IR04_12250 PF01339 CheB methylesterase IR04_12255 PF01584 CheW-like domain IR04_12265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_12265 PF00672 HAMP domain IR04_12265 PF12729 Four helix bundle sensory module for signal transduction IR04_12270 PF08447 PAS fold IR04_12270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_12270 PF13426 PAS domain IR04_12275 PF00270 DEAD/DEAH box helicase IR04_12275 PF00271 Helicase conserved C-terminal domain IR04_12285 PF02321 Outer membrane efflux protein IR04_12290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IR04_12290 PF00529 HlyD membrane-fusion protein of T1SS IR04_12295 PF07690 Major Facilitator Superfamily IR04_12300 PF02743 Cache domain IR04_12300 PF00672 HAMP domain IR04_12300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_12305 PF02074 Carboxypeptidase Taq (M32) metallopeptidase IR04_12310 PF05638 Type VI secretion system effector, Hcp IR04_12315 PF16671 Actin cross-linking domain IR04_12315 PF04717 Type VI secretion system, phage-baseplate injector IR04_12340 PF01810 LysE type translocator IR04_12345 PF01235 Sodium:alanine symporter family IR04_12360 PF13416 Bacterial extracellular solute-binding protein IR04_12365 PF13416 Bacterial extracellular solute-binding protein IR04_12370 PF00528 Binding-protein-dependent transport system inner membrane component IR04_12375 PF00528 Binding-protein-dependent transport system inner membrane component IR04_12380 PF08402 TOBE domain IR04_12380 PF00005 ABC transporter IR04_12400 PF01171 PP-loop family IR04_12405 PF00582 Universal stress protein family IR04_12410 PF00027 Cyclic nucleotide-binding domain IR04_12410 PF13545 Crp-like helix-turn-helix domain IR04_12425 PF00403 Heavy-metal-associated domain IR04_12435 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP IR04_12435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IR04_12450 PF00115 Cytochrome C and Quinol oxidase polypeptide I IR04_12465 PF09308 LuxQ, periplasmic IR04_12465 PF00072 Response regulator receiver domain IR04_12465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_12465 PF00512 His Kinase A (phospho-acceptor) domain IR04_12470 PF00664 ABC transporter transmembrane region IR04_12470 PF03412 Peptidase C39 family IR04_12470 PF00005 ABC transporter IR04_12480 PF03412 Peptidase C39 family IR04_12480 PF00664 ABC transporter transmembrane region IR04_12480 PF00005 ABC transporter IR04_12490 PF02794 RTX toxin acyltransferase family IR04_12495 PF12146 Serine aminopeptidase, S33 IR04_12495 PF07634 RtxA repeat IR04_12495 PF16671 Actin cross-linking domain IR04_12495 PF11647 Membrane Localization Domain IR04_12495 PF11713 Peptidase C80 family IR04_12515 PF01381 Helix-turn-helix IR04_12520 PF01376 Heat-labile enterotoxin beta chain IR04_12525 PF01375 Heat-labile enterotoxin alpha chain IR04_12530 PF05707 Zonular occludens toxin (Zot) IR04_12535 PF10734 Protein of unknown function (DUF2523) IR04_12540 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII IR04_12565 PF01381 Helix-turn-helix IR04_12630 PF01527 Transposase IR04_12635 PF00665 Integrase core domain IR04_12650 PF06303 MatP N-terminal domain IR04_12650 PF17414 MatP C-terminal ribbon-helix-helix domain IR04_12655 PF13654 AAA domain IR04_12655 PF05362 Lon protease (S16) C-terminal proteolytic domain IR04_12660 PF07977 FabA-like domain IR04_12680 PF10672 S-adenosylmethionine-dependent methyltransferase IR04_12680 PF01170 Putative RNA methylase family UPF0020 IR04_12680 PF02926 THUMP domain IR04_12685 PF07126 Cell-division protein ZapC IR04_12690 PF01180 Dihydroorotate dehydrogenase IR04_12695 PF05088 Bacterial NAD-glutamate dehydrogenase IR04_12705 PF17432 Domain of unknown function (DUF3458_C) ARM repeats IR04_12705 PF11940 Domain of unknown function (DUF3458) Ig-like fold IR04_12705 PF01433 Peptidase family M1 domain IR04_12715 PF17804 Tail specific protease N-terminal domain IR04_12715 PF03572 Peptidase family S41 IR04_12715 PF11818 C-terminal domain of tail specific protease (DUF3340) IR04_12715 PF00595 PDZ domain IR04_12720 PF04352 ProQ/FINO family IR04_12720 PF17516 ProQ C-terminal domain IR04_12725 PF13185 GAF domain IR04_12730 PF00005 ABC transporter IR04_12730 PF00664 ABC transporter transmembrane region IR04_12735 PF04403 Paraquat-inducible protein A IR04_12740 PF02470 MlaD protein IR04_12745 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF IR04_12745 PF01189 16S rRNA methyltransferase RsmB/F IR04_12745 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF IR04_12750 PF13509 S1 domain IR04_12750 PF17783 CvfB-like winged helix domain IR04_12765 PF00793 DAHP synthetase I family IR04_12770 PF04461 Protein of unknown function (DUF520) IR04_12775 PF02146 Sir2 family IR04_12790 PF13247 4Fe-4S dicluster domain IR04_12795 PF00384 Molybdopterin oxidoreductase IR04_12795 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IR04_12795 PF01568 Molydopterin dinucleotide binding domain IR04_12805 PF02613 Nitrate reductase delta subunit IR04_12825 PF02634 FdhD/NarQ family IR04_12830 PF12848 ABC transporter IR04_12830 PF00005 ABC transporter IR04_12835 PF00512 His Kinase A (phospho-acceptor) domain IR04_12835 PF00989 PAS fold IR04_12835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_12840 PF00072 Response regulator receiver domain IR04_12840 PF02954 Bacterial regulatory protein, Fis family IR04_12840 PF00158 Sigma-54 interaction domain IR04_12845 PF12849 PBP superfamily domain IR04_12850 PF00528 Binding-protein-dependent transport system inner membrane component IR04_12855 PF00005 ABC transporter IR04_12855 PF08402 TOBE domain IR04_12860 PF12804 MobA-like NTP transferase domain IR04_12865 PF00994 Probable molybdopterin binding domain IR04_12865 PF03454 MoeA C-terminal region (domain IV) IR04_12865 PF03453 MoeA N-terminal region (domain I and II) IR04_12890 PF00480 ROK family IR04_12905 PF00672 HAMP domain IR04_12905 PF02743 Cache domain IR04_12905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_12910 PF00877 NlpC/P60 family IR04_12930 PF01554 MatE IR04_12940 PF01068 ATP dependent DNA ligase domain IR04_12940 PF14743 DNA ligase OB-like domain IR04_12950 PF03544 Gram-negative bacterial TonB protein C-terminal IR04_12955 PF02472 Biopolymer transport protein ExbD/TolR IR04_12960 PF01618 MotA/TolQ/ExbB proton channel family IR04_12965 PF01618 MotA/TolQ/ExbB proton channel family IR04_12975 PF13416 Bacterial extracellular solute-binding protein IR04_12980 PF00528 Binding-protein-dependent transport system inner membrane component IR04_12985 PF00528 Binding-protein-dependent transport system inner membrane component IR04_12990 PF17912 MalK OB fold domain IR04_12990 PF00005 ABC transporter IR04_12995 PF08220 DeoR-like helix-turn-helix domain IR04_12995 PF00455 DeoR C terminal sensor domain IR04_13000 PF03009 Glycerophosphoryl diester phosphodiesterase family IR04_13005 PF04074 YhcH/YjgK/YiaL IR04_13010 PF01042 Endoribonuclease L-PSP IR04_13015 PF00356 Bacterial regulatory proteins, lacI family IR04_13020 PF00232 Glycosyl hydrolase family 1 IR04_13030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_13030 PF03466 LysR substrate binding domain IR04_13040 PF00529 HlyD membrane-fusion protein of T1SS IR04_13050 PF12704 MacB-like periplasmic core domain IR04_13050 PF00005 ABC transporter IR04_13050 PF02687 FtsX-like permease family IR04_13055 PF00005 ABC transporter IR04_13055 PF02687 FtsX-like permease family IR04_13055 PF12704 MacB-like periplasmic core domain IR04_13060 PF00005 ABC transporter IR04_13060 PF02687 FtsX-like permease family IR04_13060 PF12704 MacB-like periplasmic core domain IR04_13065 PF02322 Cytochrome bd terminal oxidase subunit II IR04_13070 PF01654 Cytochrome bd terminal oxidase subunit I IR04_13080 PF10415 Fumarase C C-terminus IR04_13080 PF00206 Lyase IR04_13110 PF13193 AMP-binding enzyme C-terminal domain IR04_13110 PF00501 AMP-binding enzyme IR04_13115 PF03466 LysR substrate binding domain IR04_13115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_13120 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IR04_13120 PF00361 Proton-conducting membrane transporter IR04_13125 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) IR04_13130 PF00080 Copper/zinc superoxide dismutase (SODC) IR04_13150 PF03466 LysR substrate binding domain IR04_13150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_13160 PF00205 Thiamine pyrophosphate enzyme, central domain IR04_13160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IR04_13160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IR04_13170 PF00990 Diguanylate cyclase, GGDEF domain IR04_13170 PF17154 Gammaproteobacterial periplasmic sensor domain IR04_13170 PF00563 EAL domain IR04_13170 PF00672 HAMP domain IR04_13175 PF00990 Diguanylate cyclase, GGDEF domain IR04_13180 PF01263 Aldose 1-epimerase IR04_13185 PF08544 GHMP kinases C terminal IR04_13185 PF10509 Galactokinase galactose-binding signature IR04_13185 PF00288 GHMP kinases N terminal domain IR04_13190 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain IR04_13190 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain IR04_13195 PF07690 Major Facilitator Superfamily IR04_13215 PF00990 Diguanylate cyclase, GGDEF domain IR04_13215 PF00072 Response regulator receiver domain IR04_13230 PF01584 CheW-like domain IR04_13230 PF00072 Response regulator receiver domain IR04_13240 PF12431 Transcriptional regulator IR04_13240 PF00072 Response regulator receiver domain IR04_13245 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain IR04_13245 PF17203 Single cache domain 3 IR04_13245 PF00989 PAS fold IR04_13245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_13260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IR04_13280 PF04204 Homoserine O-succinyltransferase IR04_13295 PF05971 RNA methyltransferase IR04_13300 PF01863 Protein of unknown function DUF45 IR04_13310 PF03466 LysR substrate binding domain IR04_13310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_13330 PF02321 Outer membrane efflux protein IR04_13335 PF00691 OmpA family IR04_13335 PF05736 OprF membrane domain IR04_13345 PF03435 Saccharopine dehydrogenase NADP binding domain IR04_13345 PF16653 Saccharopine dehydrogenase C-terminal domain IR04_13350 PF00202 Aminotransferase class-III IR04_13355 PF06965 Na+/H+ antiporter 1 IR04_13370 PF00005 ABC transporter IR04_13375 PF01554 MatE IR04_13380 PF13460 NAD(P)H-binding IR04_13380 PF11066 Protein of unknown function (DUF2867) IR04_13390 PF07690 Major Facilitator Superfamily IR04_13395 PF01479 S4 domain IR04_13395 PF00849 RNA pseudouridylate synthase IR04_13400 PF00271 Helicase conserved C-terminal domain IR04_13400 PF04851 Type III restriction enzyme, res subunit IR04_13410 PF00486 Transcriptional regulatory protein, C terminal IR04_13410 PF00072 Response regulator receiver domain IR04_13420 PF01386 Ribosomal L25p family IR04_13425 PF00563 EAL domain IR04_13425 PF00990 Diguanylate cyclase, GGDEF domain IR04_13425 PF00360 Phytochrome region IR04_13425 PF01590 GAF domain IR04_13440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_13440 PF12729 Four helix bundle sensory module for signal transduction IR04_13440 PF00672 HAMP domain IR04_13460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IR04_13460 PF12793 Sugar transport-related sRNA regulator N-term IR04_13470 PF04151 Bacterial pre-peptidase C-terminal domain IR04_13470 PF08453 Peptidase family M9 N-terminal IR04_13470 PF01752 Collagenase IR04_13480 PF03707 Bacterial signalling protein N terminal repeat IR04_13480 PF00990 Diguanylate cyclase, GGDEF domain IR04_13480 PF00563 EAL domain IR04_13485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_13485 PF00512 His Kinase A (phospho-acceptor) domain IR04_13485 PF09308 LuxQ, periplasmic IR04_13485 PF00072 Response regulator receiver domain IR04_13490 PF00571 CBS domain IR04_13490 PF01769 Divalent cation transporter IR04_13490 PF03448 MgtE intracellular N domain IR04_13505 PF03222 Tryptophan/tyrosine permease family IR04_13510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IR04_13515 PF00005 ABC transporter IR04_13530 PF06945 Protein of unknown function (DUF1289) IR04_13540 PF13416 Bacterial extracellular solute-binding protein IR04_13545 PF00528 Binding-protein-dependent transport system inner membrane component IR04_13550 PF00005 ABC transporter IR04_13555 PF01066 CDP-alcohol phosphatidyltransferase IR04_13560 PF00849 RNA pseudouridylate synthase IR04_13565 PF00209 Sodium:neurotransmitter symporter family IR04_13570 PF13091 PLD-like domain IR04_13570 PF13396 Phospholipase_D-nuclease N-terminal IR04_13575 PF01053 Cys/Met metabolism PLP-dependent enzyme IR04_13580 PF03352 Methyladenine glycosylase IR04_13585 PF00873 AcrB/AcrD/AcrF family IR04_13590 PF13533 Biotin-lipoyl like IR04_13595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IR04_13595 PF00529 HlyD membrane-fusion protein of T1SS IR04_13610 PF04012 PspA/IM30 family IR04_13615 PF02954 Bacterial regulatory protein, Fis family IR04_13615 PF00158 Sigma-54 interaction domain IR04_13620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IR04_13625 PF00528 Binding-protein-dependent transport system inner membrane component IR04_13630 PF00528 Binding-protein-dependent transport system inner membrane component IR04_13630 PF12911 N-terminal TM domain of oligopeptide transport permease C IR04_13635 PF00005 ABC transporter IR04_13635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IR04_13640 PF00005 ABC transporter IR04_13655 PF02833 DHHA2 domain IR04_13655 PF01368 DHH family IR04_13675 PF01568 Molydopterin dinucleotide binding domain IR04_13675 PF18364 Molybdopterin oxidoreductase N-terminal domain IR04_13675 PF00384 Molybdopterin oxidoreductase IR04_13680 PF03264 NapC/NirT cytochrome c family, N-terminal region IR04_13685 PF06796 Periplasmic nitrate reductase protein NapE IR04_13695 PF01226 Formate/nitrite transporter IR04_13705 PF01370 NAD dependent epimerase/dehydratase family IR04_13710 PF02698 DUF218 domain IR04_13720 PF04279 Intracellular septation protein A IR04_13725 PF03061 Thioesterase superfamily IR04_13730 PF03795 YCII-related domain IR04_13740 PF08267 Cobalamin-independent synthase, N-terminal domain IR04_13740 PF01717 Cobalamin-independent synthase, Catalytic domain IR04_13745 PF03466 LysR substrate binding domain IR04_13745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_13760 PF05193 Peptidase M16 inactive domain IR04_13760 PF00675 Insulinase (Peptidase family M16) IR04_13765 PF03707 Bacterial signalling protein N terminal repeat IR04_13765 PF00990 Diguanylate cyclase, GGDEF domain IR04_13765 PF00563 EAL domain IR04_13770 PF11842 Domain of unknown function (DUF3362) IR04_13770 PF04055 Radical SAM superfamily IR04_13770 PF08497 Radical SAM N-terminal IR04_13775 PF01810 LysE type translocator IR04_13780 PF01037 Lrp/AsnC ligand binding domain IR04_13785 PF04310 MukB N-terminal IR04_13785 PF16330 MukB hinge domain IR04_13790 PF04288 MukE-like family IR04_13805 PF02698 DUF218 domain IR04_13810 PF00072 Response regulator receiver domain IR04_13810 PF00486 Transcriptional regulatory protein, C terminal IR04_13815 PF02613 Nitrate reductase delta subunit IR04_13820 PF00356 Bacterial regulatory proteins, lacI family IR04_13825 PF04993 TfoX N-terminal domain IR04_13825 PF04994 TfoX C-terminal domain IR04_13845 PF00534 Glycosyl transferases group 1 IR04_13845 PF08323 Starch synthase catalytic domain IR04_13850 PF00483 Nucleotidyl transferase IR04_13860 PF01131 DNA topoisomerase IR04_13860 PF01751 Toprim domain IR04_13860 PF01396 Topoisomerase DNA binding C4 zinc finger IR04_13860 PF08272 Topoisomerase I zinc-ribbon-like IR04_13865 PF10692 Protein of unknown function (DUF2498) IR04_13870 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IR04_13880 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IR04_13885 PF04377 Arginine-tRNA-protein transferase, C terminus IR04_13885 PF04376 Arginine-tRNA-protein transferase, N terminus IR04_13890 PF01176 Translation initiation factor 1A / IF-1 IR04_13900 PF09317 Domain of unknown function (DUF1974) IR04_13900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IR04_13900 PF02770 Acyl-CoA dehydrogenase, middle domain IR04_13900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IR04_13905 PF16295 Tetracyclin repressor-like, C-terminal domain IR04_13905 PF00440 Bacterial regulatory proteins, tetR family IR04_13915 PF07383 Protein of unknown function (DUF1496) IR04_13920 PF00171 Aldehyde dehydrogenase family IR04_13925 PF08362 YcdC-like protein, C-terminal region IR04_13925 PF00440 Bacterial regulatory proteins, tetR family IR04_13945 PF00924 Mechanosensitive ion channel IR04_13945 PF05552 Conserved TM helix IR04_13950 PF04403 Paraquat-inducible protein A IR04_13955 PF02470 MlaD protein IR04_13965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IR04_13970 PF00873 AcrB/AcrD/AcrF family IR04_13980 PF00589 Phage integrase family IR04_13980 PF13356 Arm DNA-binding domain IR04_13990 PF00176 SNF2 family N-terminal domain IR04_13990 PF00271 Helicase conserved C-terminal domain IR04_13990 PF12419 SNF2 Helicase protein IR04_14010 PF11867 Domain of unknown function (DUF3387) IR04_14010 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IR04_14010 PF18766 SWI2/SNF2 ATPase IR04_14030 PF02384 N-6 DNA Methylase IR04_14050 PF07646 Kelch motif IR04_14055 PF01344 Kelch motif IR04_14060 PF01418 Helix-turn-helix domain, rpiR family IR04_14060 PF01380 SIS domain IR04_14065 PF00701 Dihydrodipicolinate synthetase family IR04_14070 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IR04_14075 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IR04_14080 PF03480 Bacterial extracellular solute-binding protein, family 7 IR04_14085 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase IR04_14090 PF00480 ROK family IR04_14095 PF01979 Amidohydrolase family IR04_14110 PF04002 RadC-like JAB domain IR04_14120 PF00665 Integrase core domain IR04_14125 PF01527 Transposase IR04_14170 PF00005 ABC transporter IR04_14250 PF00875 DNA photolyase IR04_14250 PF03441 FAD binding domain of DNA photolyase IR04_14260 PF09905 DNA-binding protein VF530 IR04_14265 PF02954 Bacterial regulatory protein, Fis family IR04_14265 PF00158 Sigma-54 interaction domain IR04_14265 PF01590 GAF domain IR04_14270 PF00171 Aldehyde dehydrogenase family IR04_14290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IR04_14300 PF12833 Helix-turn-helix domain IR04_14305 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IR04_14305 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IR04_14305 PF02378 Phosphotransferase system, EIIC IR04_14310 PF01238 Phosphomannose isomerase type I IR04_14315 PF06610 L-alanine exporter IR04_14320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_14320 PF00512 His Kinase A (phospho-acceptor) domain IR04_14320 PF09308 LuxQ, periplasmic IR04_14320 PF00072 Response regulator receiver domain IR04_14330 PF02445 Quinolinate synthetase A protein IR04_14340 PF00691 OmpA family IR04_14345 PF04052 TolB amino-terminal domain IR04_14345 PF07676 WD40-like Beta Propeller Repeat IR04_14355 PF02472 Biopolymer transport protein ExbD/TolR IR04_14360 PF01618 MotA/TolQ/ExbB proton channel family IR04_14365 PF03061 Thioesterase superfamily IR04_14370 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) IR04_14375 PF08173 Membrane bound YbgT-like protein IR04_14380 PF02322 Cytochrome bd terminal oxidase subunit II IR04_14385 PF01654 Cytochrome bd terminal oxidase subunit I IR04_14395 PF01330 RuvA N terminal domain IR04_14395 PF07499 RuvA, C-terminal domain IR04_14400 PF02075 Crossover junction endodeoxyribonuclease RuvC IR04_14405 PF01406 tRNA synthetases class I (C) catalytic domain IR04_14405 PF09190 DALR domain IR04_14410 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IR04_14415 PF00149 Calcineurin-like phosphoesterase IR04_14420 PF00563 EAL domain IR04_14420 PF08668 HDOD domain IR04_14425 PF02810 SEC-C motif IR04_14430 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IR04_14435 PF13609 Gram-negative porin IR04_14440 PF13307 Helicase C-terminal domain IR04_14440 PF06733 DEAD_2 IR04_14445 PF01925 Sulfite exporter TauE/SafE IR04_14450 PF07445 Primosomal replication protein priC IR04_14455 PF10689 Protein of unknown function (DUF2496) IR04_14460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_14460 PF00672 HAMP domain IR04_14465 PF03372 Endonuclease/Exonuclease/phosphatase family IR04_14470 PF00528 Binding-protein-dependent transport system inner membrane component IR04_14475 PF00528 Binding-protein-dependent transport system inner membrane component IR04_14480 PF00497 Bacterial extracellular solute-binding proteins, family 3 IR04_14485 PF00005 ABC transporter IR04_14495 PF02901 Pyruvate formate lyase-like IR04_14495 PF01228 Glycine radical IR04_14505 PF00672 HAMP domain IR04_14505 PF02743 Cache domain IR04_14505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_14510 PF04055 Radical SAM superfamily IR04_14520 PF03887 YfbU domain IR04_14525 PF06798 PrkA serine protein kinase C-terminal domain IR04_14525 PF08298 PrkA AAA domain IR04_14530 PF04285 Protein of unknown function (DUF444) IR04_14535 PF04293 SpoVR like protein IR04_14540 PF02348 Cytidylyltransferase IR04_14545 PF03966 Trm112p-like protein IR04_14550 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IR04_14555 PF00005 ABC transporter IR04_14555 PF00664 ABC transporter transmembrane region IR04_14560 PF03772 Competence protein IR04_14560 PF00753 Metallo-beta-lactamase superfamily IR04_14560 PF13567 Domain of unknown function (DUF4131) IR04_14570 PF12704 MacB-like periplasmic core domain IR04_14570 PF02687 FtsX-like permease family IR04_14575 PF00005 ABC transporter IR04_14580 PF02687 FtsX-like permease family IR04_14580 PF12704 MacB-like periplasmic core domain IR04_14590 PF00270 DEAD/DEAH box helicase IR04_14590 PF00271 Helicase conserved C-terminal domain IR04_14590 PF03461 TRCF domain IR04_14590 PF17757 UvrB interaction domain IR04_14590 PF02559 CarD-like/TRCF domain IR04_14600 PF07968 Leukocidin/Hemolysin toxin family IR04_14600 PF12563 Hemolytic toxin N terminal IR04_14600 PF16458 Beta-prism lectin IR04_14610 PF07992 Pyridine nucleotide-disulphide oxidoreductase IR04_14615 PF05728 Uncharacterised protein family (UPF0227) IR04_14625 PF13036 Peptidoglycan-synthase activator LpoB IR04_14625 PF08139 Prokaryotic membrane lipoprotein lipid attachment site IR04_14640 PF01230 HIT domain IR04_14645 PF00672 HAMP domain IR04_14645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_14655 PF00392 Bacterial regulatory proteins, gntR family IR04_14655 PF07840 FadR C-terminal domain IR04_14660 PF06450 Bacterial Na+/H+ antiporter B (NhaB) IR04_14665 PF02600 Disulfide bond formation protein DsbB IR04_14670 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IR04_14670 PF09397 Ftsk gamma domain IR04_14670 PF17854 FtsK alpha domain IR04_14670 PF01580 FtsK/SpoIIIE family IR04_14680 PF01037 Lrp/AsnC ligand binding domain IR04_14685 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IR04_14685 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IR04_14695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_14695 PF03466 LysR substrate binding domain IR04_14710 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) IR04_14715 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IR04_14720 PF18073 Rubredoxin metal binding domain IR04_14725 PF06305 Lipopolysaccharide assembly protein A domain IR04_14730 PF00216 Bacterial DNA-binding protein IR04_14735 PF00575 S1 RNA binding domain IR04_14740 PF02224 Cytidylate kinase IR04_14750 PF13145 PPIC-type PPIASE domain IR04_14755 PF00216 Bacterial DNA-binding protein IR04_14760 PF05362 Lon protease (S16) C-terminal proteolytic domain IR04_14760 PF00004 ATPase family associated with various cellular activities (AAA) IR04_14760 PF02190 ATP-dependent protease La (LON) substrate-binding domain IR04_14765 PF10431 C-terminal, D2-small domain, of ClpB protein IR04_14765 PF07724 AAA domain (Cdc48 subfamily) IR04_14765 PF06689 ClpX C4-type zinc finger IR04_14770 PF00574 Clp protease IR04_14775 PF05697 Bacterial trigger factor protein (TF) IR04_14775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IR04_14775 PF05698 Bacterial trigger factor protein (TF) C-terminus IR04_14785 PF02743 Cache domain IR04_14785 PF00512 His Kinase A (phospho-acceptor) domain IR04_14785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_14790 PF00158 Sigma-54 interaction domain IR04_14790 PF02954 Bacterial regulatory protein, Fis family IR04_14790 PF00072 Response regulator receiver domain IR04_14795 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IR04_14800 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IR04_14805 PF03480 Bacterial extracellular solute-binding protein, family 7 IR04_14810 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IR04_14825 PF03707 Bacterial signalling protein N terminal repeat IR04_14825 PF00990 Diguanylate cyclase, GGDEF domain IR04_14825 PF00563 EAL domain IR04_14825 PF13188 PAS domain IR04_14870 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IR04_14870 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IR04_14875 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IR04_14880 PF01494 FAD binding domain IR04_14890 PF03466 LysR substrate binding domain IR04_14890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_14900 PF00384 Molybdopterin oxidoreductase IR04_14900 PF18364 Molybdopterin oxidoreductase N-terminal domain IR04_14900 PF01568 Molydopterin dinucleotide binding domain IR04_14905 PF03264 NapC/NirT cytochrome c family, N-terminal region IR04_14910 PF00704 Glycosyl hydrolases family 18 IR04_14915 PF07662 Na+ dependent nucleoside transporter C-terminus IR04_14915 PF07670 Nucleoside recognition IR04_14915 PF01773 Na+ dependent nucleoside transporter N-terminus IR04_14925 PF03466 LysR substrate binding domain IR04_14925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_14930 PF13406 Transglycosylase SLT domain IR04_14935 PF05166 YcgL domain IR04_14940 PF03775 Septum formation inhibitor MinC, C-terminal domain IR04_14940 PF05209 Septum formation inhibitor MinC, N-terminal domain IR04_14945 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IR04_14950 PF03776 Septum formation topological specificity factor MinE IR04_14955 PF04170 NlpE N-terminal domain IR04_14975 PF07690 Major Facilitator Superfamily IR04_14985 PF00672 HAMP domain IR04_14985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_14985 PF12729 Four helix bundle sensory module for signal transduction IR04_14990 PF01381 Helix-turn-helix IR04_14990 PF07883 Cupin domain IR04_14995 PF03594 Benzoate membrane transport protein IR04_15000 PF00501 AMP-binding enzyme IR04_15000 PF13193 AMP-binding enzyme C-terminal domain IR04_15005 PF13378 Enolase C-terminal domain-like IR04_15010 PF00378 Enoyl-CoA hydratase/isomerase IR04_15015 PF12697 Alpha/beta hydrolase family IR04_15020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IR04_15020 PF16582 Middle domain of thiamine pyrophosphate IR04_15020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IR04_15025 PF00425 chorismate binding enzyme IR04_15030 PF00155 Aminotransferase class I and II IR04_15040 PF13286 Phosphohydrolase-associated domain IR04_15040 PF01966 HD domain IR04_15060 PF00570 HRDC domain IR04_15060 PF01612 3'-5' exonuclease IR04_15065 PF00501 AMP-binding enzyme IR04_15065 PF13193 AMP-binding enzyme C-terminal domain IR04_15070 PF00561 alpha/beta hydrolase fold IR04_15085 PF00814 Glycoprotease family IR04_15090 PF04851 Type III restriction enzyme, res subunit IR04_15090 PF13307 Helicase C-terminal domain IR04_15100 PF00551 Formyl transferase IR04_15100 PF01842 ACT domain IR04_15105 PF07992 Pyridine nucleotide-disulphide oxidoreductase IR04_15105 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IR04_15110 PF01343 Peptidase family S49 IR04_15115 PF00710 Asparaginase, N-terminal IR04_15115 PF17763 Glutaminase/Asparaginase C-terminal domain IR04_15120 PF07023 Protein of unknown function (DUF1315) IR04_15130 PF01641 SelR domain IR04_15135 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IR04_15135 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IR04_15140 PF01263 Aldose 1-epimerase IR04_15150 PF13847 Methyltransferase domain IR04_15165 PF00072 Response regulator receiver domain IR04_15165 PF01584 CheW-like domain IR04_15170 PF00480 ROK family IR04_15175 PF00224 Pyruvate kinase, barrel domain IR04_15175 PF02887 Pyruvate kinase, alpha/beta domain IR04_15180 PF01734 Patatin-like phospholipase IR04_15195 PF00209 Sodium:neurotransmitter symporter family IR04_15205 PF02378 Phosphotransferase system, EIIC IR04_15205 PF00367 phosphotransferase system, EIIB IR04_15210 PF01026 TatD related DNase IR04_15215 PF09115 DNA polymerase III, delta subunit, C terminal IR04_15220 PF02223 Thymidylate kinase IR04_15225 PF02618 YceG-like family IR04_15230 PF01063 Amino-transferase class IV IR04_15235 PF02801 Beta-ketoacyl synthase, C-terminal domain IR04_15235 PF00109 Beta-ketoacyl synthase, N-terminal domain IR04_15240 PF00550 Phosphopantetheine attachment site IR04_15250 PF00698 Acyl transferase domain IR04_15255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IR04_15255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IR04_15260 PF02504 Fatty acid synthesis protein IR04_15265 PF01783 Ribosomal L32p protein family IR04_15270 PF02620 Large ribosomal RNA subunit accumulation protein YceD IR04_15275 PF02545 Maf-like protein IR04_15280 PF01479 S4 domain IR04_15280 PF00849 RNA pseudouridylate synthase IR04_15290 PF10150 Ribonuclease E/G family IR04_15290 PF12111 Polyribonucleotide phosphorylase C terminal IR04_15290 PF00575 S1 RNA binding domain IR04_15295 PF01740 STAS domain IR04_15295 PF00916 Sulfate permease family IR04_15305 PF00171 Aldehyde dehydrogenase family IR04_15305 PF00465 Iron-containing alcohol dehydrogenase IR04_15310 PF01914 MarC family integral membrane protein IR04_15315 PF01118 Semialdehyde dehydrogenase, NAD binding domain IR04_15315 PF02774 Semialdehyde dehydrogenase, dimerisation domain IR04_15320 PF03553 Na+/H+ antiporter family IR04_15330 PF04245 37-kD nucleoid-associated bacterial protein IR04_15335 PF07208 Protein of unknown function (DUF1414) IR04_15340 PF11893 Domain of unknown function (DUF3413) IR04_15340 PF00884 Sulfatase IR04_15355 PF00850 Histone deacetylase domain IR04_15360 PF01131 DNA topoisomerase IR04_15360 PF01751 Toprim domain IR04_15365 PF00462 Glutaredoxin IR04_15370 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IR04_15370 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IR04_15385 PF04333 MlaA lipoprotein IR04_15395 PF03918 Cytochrome C biogenesis protein IR04_15400 PF08534 Redoxin IR04_15405 PF01578 Cytochrome C assembly protein IR04_15405 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IR04_15410 PF03100 CcmE IR04_15415 PF04995 Heme exporter protein D (CcmD) IR04_15420 PF01578 Cytochrome C assembly protein IR04_15425 PF03379 CcmB protein IR04_15430 PF00005 ABC transporter IR04_15440 PF01584 CheW-like domain IR04_15450 PF13614 AAA domain IR04_15455 PF01339 CheB methylesterase IR04_15455 PF00072 Response regulator receiver domain IR04_15460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_15460 PF01627 Hpt domain IR04_15460 PF07194 P2 response regulator binding domain IR04_15460 PF02895 Signal transducing histidine kinase, homodimeric domain IR04_15460 PF01584 CheW-like domain IR04_15465 PF04344 Chemotaxis phosphatase, CheZ IR04_15470 PF00072 Response regulator receiver domain IR04_15475 PF04539 Sigma-70 region 3 IR04_15475 PF04542 Sigma-70 region 2 IR04_15475 PF04545 Sigma-70, region 4 IR04_15480 PF10609 NUBPL iron-transfer P-loop NTPase IR04_15485 PF00448 SRP54-type protein, GTPase domain IR04_15490 PF00771 FHIPEP family IR04_15495 PF00300 Histidine phosphatase superfamily (branch 1) IR04_15500 PF05193 Peptidase M16 inactive domain IR04_15500 PF00675 Insulinase (Peptidase family M16) IR04_15510 PF00750 tRNA synthetases class I (R) IR04_15510 PF05746 DALR anticodon binding domain IR04_15510 PF03485 Arginyl tRNA synthetase N terminal domain IR04_15525 PF07670 Nucleoside recognition IR04_15525 PF07664 Ferrous iron transport protein B C terminus IR04_15525 PF02421 Ferrous iron transport protein B IR04_15530 PF04023 FeoA domain IR04_15535 PF12833 Helix-turn-helix domain IR04_15535 PF02311 AraC-like ligand binding domain IR04_15540 PF01297 Zinc-uptake complex component A periplasmic IR04_15545 PF00005 ABC transporter IR04_15550 PF00950 ABC 3 transport family IR04_15555 PF02629 CoA binding domain IR04_15555 PF00549 CoA-ligase IR04_15560 PF08442 ATP-grasp domain IR04_15560 PF00549 CoA-ligase IR04_15565 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IR04_15565 PF02817 e3 binding domain IR04_15565 PF00364 Biotin-requiring enzyme IR04_15570 PF00676 Dehydrogenase E1 component IR04_15570 PF16078 2-oxoglutarate dehydrogenase N-terminus IR04_15570 PF02779 Transketolase, pyrimidine binding domain IR04_15570 PF16870 2-oxoglutarate dehydrogenase C-terminal IR04_15575 PF13085 2Fe-2S iron-sulfur cluster binding domain IR04_15580 PF00890 FAD binding domain IR04_15580 PF02910 Fumarate reductase flavoprotein C-term IR04_15585 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IR04_15590 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IR04_15600 PF00285 Citrate synthase, C-terminal domain IR04_15605 PF01784 NIF3 (NGG1p interacting factor 3) IR04_15615 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IR04_15615 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IR04_15615 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IR04_15615 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IR04_15620 PF17206 SeqA protein N-terminal domain IR04_15620 PF03925 SeqA protein C-terminal domain IR04_15625 PF12697 Alpha/beta hydrolase family IR04_15635 PF00258 Flavodoxin IR04_15640 PF04172 LrgB-like family IR04_15645 PF03788 LrgA family IR04_15650 PF03466 LysR substrate binding domain IR04_15650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_15660 PF01475 Ferric uptake regulator family IR04_15665 PF02774 Semialdehyde dehydrogenase, dimerisation domain IR04_15665 PF01118 Semialdehyde dehydrogenase, NAD binding domain IR04_15670 PF11890 Domain of unknown function (DUF3410) IR04_15670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IR04_15670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IR04_15675 PF00109 Beta-ketoacyl synthase, N-terminal domain IR04_15675 PF02801 Beta-ketoacyl synthase, C-terminal domain IR04_15680 PF01266 FAD dependent oxidoreductase IR04_15680 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IR04_15685 PF03358 NADPH-dependent FMN reductase IR04_15690 PF08891 YfcL protein IR04_15695 PF04315 Elongation factor P hydroxylase IR04_15700 PF03458 UPF0126 domain IR04_15705 PF01264 Chorismate synthase IR04_15710 PF05175 Methyltransferase small domain IR04_15715 PF01713 Smr domain IR04_15720 PF01312 FlhB HrpN YscU SpaS Family IR04_15725 PF01311 Bacterial export proteins, family 1 IR04_15730 PF01313 Bacterial export proteins, family 3 IR04_15735 PF00813 FliP family IR04_15740 PF04347 Flagellar biosynthesis protein, FliO IR04_15745 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IR04_15750 PF02154 Flagellar motor switch protein FliM IR04_15750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IR04_15755 PF03748 Flagellar basal body-associated protein FliL IR04_15770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IR04_15770 PF18269 T3SS EscN ATPase C-terminal domain IR04_15775 PF02108 Flagellar assembly protein FliH IR04_15780 PF01706 FliG C-terminal domain IR04_15780 PF14841 FliG middle domain IR04_15780 PF14842 FliG N-terminal domain IR04_15785 PF08345 Flagellar M-ring protein C-terminal IR04_15785 PF01514 Secretory protein of YscJ/FliF family IR04_15790 PF02049 Flagellar hook-basal body complex protein FliE IR04_15795 PF02954 Bacterial regulatory protein, Fis family IR04_15795 PF00072 Response regulator receiver domain IR04_15795 PF00158 Sigma-54 interaction domain IR04_15800 PF00512 His Kinase A (phospho-acceptor) domain IR04_15800 PF13493 Domain of unknown function (DUF4118) IR04_15800 PF13426 PAS domain IR04_15800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_15800 PF00989 PAS fold IR04_15800 PF08447 PAS fold IR04_15805 PF00158 Sigma-54 interaction domain IR04_15805 PF00072 Response regulator receiver domain IR04_15805 PF02954 Bacterial regulatory protein, Fis family IR04_15810 PF02561 Flagellar protein FliS IR04_15820 PF07195 Flagellar hook-associated protein 2 C-terminus IR04_15820 PF07196 Flagellin hook IN motif IR04_15820 PF02465 Flagellar hook-associated protein 2 N-terminus IR04_15825 PF03646 FlaG protein IR04_15830 PF07196 Flagellin hook IN motif IR04_15830 PF00700 Bacterial flagellin C-terminal helical region IR04_15830 PF00669 Bacterial flagellin N-terminal helical region IR04_15835 PF00700 Bacterial flagellin C-terminal helical region IR04_15835 PF00669 Bacterial flagellin N-terminal helical region IR04_15835 PF07196 Flagellin hook IN motif IR04_15840 PF00700 Bacterial flagellin C-terminal helical region IR04_15840 PF00669 Bacterial flagellin N-terminal helical region IR04_15840 PF07196 Flagellin hook IN motif IR04_15845 PF04261 Dyp-type peroxidase family IR04_15850 PF11143 Protein of unknown function (DUF2919) IR04_15865 PF03960 ArsC family IR04_15870 PF01546 Peptidase family M20/M25/M40 IR04_15870 PF07687 Peptidase dimerisation domain IR04_15875 PF02557 D-alanyl-D-alanine carboxypeptidase IR04_15885 PF06804 NlpB/DapX lipoprotein IR04_15890 PF00701 Dihydrodipicolinate synthetase family IR04_15900 PF00578 AhpC/TSA family IR04_15905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_15905 PF00672 HAMP domain IR04_15905 PF02743 Cache domain IR04_15910 PF01594 AI-2E family transporter IR04_15920 PF01435 Peptidase family M48 IR04_15920 PF13181 Tetratricopeptide repeat IR04_15925 PF03960 ArsC family IR04_15930 PF03358 NADPH-dependent FMN reductase IR04_15945 PF00860 Permease family IR04_15950 PF04073 Aminoacyl-tRNA editing domain IR04_15955 PF02872 5'-nucleotidase, C-terminal domain IR04_15955 PF00149 Calcineurin-like phosphoesterase IR04_15960 PF00793 DAHP synthetase I family IR04_15965 PF13369 Transglutaminase-like superfamily IR04_15970 PF04247 Invasion gene expression up-regulator, SirB IR04_15975 PF13847 Methyltransferase domain IR04_15975 PF17827 PrmC N-terminal domain IR04_15980 PF00472 RF-1 domain IR04_15980 PF03462 PCRF domain IR04_15985 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IR04_15985 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IR04_15985 PF01488 Shikimate / quinate 5-dehydrogenase IR04_15990 PF03550 Outer membrane lipoprotein LolB IR04_15995 PF00288 GHMP kinases N terminal domain IR04_15995 PF08544 GHMP kinases C terminal IR04_16000 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IR04_16000 PF14572 Phosphoribosyl synthetase-associated domain IR04_16005 PF01195 Peptidyl-tRNA hydrolase IR04_16010 PF01926 50S ribosome-binding GTPase IR04_16010 PF06071 Protein of unknown function (DUF933) IR04_16095 PF07196 Flagellin hook IN motif IR04_16095 PF00669 Bacterial flagellin N-terminal helical region IR04_16095 PF00700 Bacterial flagellin C-terminal helical region IR04_16100 PF00669 Bacterial flagellin N-terminal helical region IR04_16100 PF07196 Flagellin hook IN motif IR04_16100 PF00700 Bacterial flagellin C-terminal helical region IR04_16110 PF07196 Flagellin hook IN motif IR04_16110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IR04_16115 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase IR04_16115 PF10135 Rod binding protein IR04_16120 PF02119 Flagellar P-ring protein IR04_16125 PF02107 Flagellar L-ring protein IR04_16130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IR04_16130 PF00460 Flagella basal body rod protein IR04_16135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IR04_16135 PF00460 Flagella basal body rod protein IR04_16140 PF00460 Flagella basal body rod protein IR04_16140 PF07559 Flagellar basal body protein FlaE IR04_16140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IR04_16145 PF13861 FlgD Tudor-like domain IR04_16145 PF13860 FlgD Ig-like domain IR04_16145 PF03963 Flagellar hook capping protein - N-terminal region IR04_16150 PF00460 Flagella basal body rod protein IR04_16150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IR04_16155 PF00460 Flagella basal body rod protein IR04_16160 PF03705 CheR methyltransferase, all-alpha domain IR04_16160 PF01739 CheR methyltransferase, SAM binding domain IR04_16165 PF00072 Response regulator receiver domain IR04_16165 PF01584 CheW-like domain IR04_16200 PF00550 Phosphopantetheine attachment site IR04_16200 PF08242 Methyltransferase domain IR04_16200 PF00668 Condensation domain IR04_16200 PF00501 AMP-binding enzyme IR04_16205 PF08021 Siderophore-interacting FAD-binding domain IR04_16205 PF04954 Siderophore-interacting protein IR04_16210 PF07715 TonB-dependent Receptor Plug Domain IR04_16220 PF01389 OmpA-like transmembrane domain IR04_16220 PF00691 OmpA family IR04_16225 PF00749 tRNA synthetases class I (E and Q), catalytic domain IR04_16230 PF00403 Heavy-metal-associated domain IR04_16240 PF02838 Glycosyl hydrolase family 20, domain 2 IR04_16240 PF00728 Glycosyl hydrolase family 20, catalytic domain IR04_16240 PF03173 Putative carbohydrate binding domain IR04_16240 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain IR04_16245 PF01963 TraB family IR04_16260 PF01713 Smr domain IR04_16265 PF00849 RNA pseudouridylate synthase IR04_16265 PF01479 S4 domain IR04_16270 PF08448 PAS fold IR04_16270 PF00990 Diguanylate cyclase, GGDEF domain IR04_16280 PF00586 AIR synthase related protein, N-terminal domain IR04_16280 PF02769 AIR synthase related protein, C-terminal domain IR04_16285 PF00551 Formyl transferase IR04_16290 PF13230 Glutamine amidotransferases class-II IR04_16295 PF13580 SIS domain IR04_16300 PF02770 Acyl-CoA dehydrogenase, middle domain IR04_16300 PF09317 Domain of unknown function (DUF1974) IR04_16300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IR04_16300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IR04_16310 PF00929 Exonuclease IR04_16315 PF00075 RNase H IR04_16320 PF08241 Methyltransferase domain IR04_16325 PF16123 Hydroxyacylglutathione hydrolase C-terminus IR04_16325 PF00753 Metallo-beta-lactamase superfamily IR04_16330 PF01464 Transglycosylase SLT domain IR04_16330 PF01476 LysM domain IR04_16335 PF03372 Endonuclease/Exonuclease/phosphatase family IR04_16340 PF00543 Nitrogen regulatory protein P-II IR04_16345 PF05870 Phenolic acid decarboxylase (PAD) IR04_16350 PF00034 Cytochrome c IR04_16355 PF11734 TilS substrate C-terminal domain IR04_16355 PF09179 TilS substrate binding domain IR04_16355 PF01171 PP-loop family IR04_16360 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IR04_16365 PF14579 Helix-hairpin-helix motif IR04_16365 PF02811 PHP domain IR04_16365 PF01336 OB-fold nucleic acid binding domain IR04_16365 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IR04_16365 PF07733 Bacterial DNA polymerase III alpha NTPase domain IR04_16370 PF01351 Ribonuclease HII IR04_16375 PF02684 Lipid-A-disaccharide synthetase IR04_16380 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IR04_16380 PF00132 Bacterial transferase hexapeptide (six repeats) IR04_16385 PF07977 FabA-like domain IR04_16390 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IR04_16390 PF00132 Bacterial transferase hexapeptide (six repeats) IR04_16395 PF03938 Outer membrane protein (OmpH-like) IR04_16400 PF01103 Surface antigen IR04_16400 PF07244 Surface antigen variable number repeat IR04_16405 PF02163 Peptidase family M50 IR04_16405 PF17820 PDZ domain IR04_16410 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IR04_16410 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IR04_16410 PF13288 DXP reductoisomerase C-terminal domain IR04_16420 PF01255 Putative undecaprenyl diphosphate synthase IR04_16425 PF01765 Ribosome recycling factor IR04_16430 PF00696 Amino acid kinase family IR04_16435 PF00889 Elongation factor TS IR04_16440 PF00318 Ribosomal protein S2 IR04_16445 PF00557 Metallopeptidase family M24 IR04_16450 PF01909 Nucleotidyltransferase domain IR04_16450 PF01966 HD domain IR04_16450 PF08335 GlnD PII-uridylyltransferase IR04_16455 PF11944 Protein of unknown function (DUF3461) IR04_16460 PF04608 Phosphatidylglycerophosphatase A IR04_16465 PF00586 AIR synthase related protein, N-terminal domain IR04_16465 PF02769 AIR synthase related protein, C-terminal domain IR04_16470 PF01029 NusB family IR04_16475 PF00885 6,7-dimethyl-8-ribityllumazine synthase IR04_16480 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IR04_16480 PF00925 GTP cyclohydrolase II IR04_16485 PF00677 Lumazine binding domain IR04_16490 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IR04_16490 PF01872 RibD C-terminal domain IR04_16495 PF03477 ATP cone domain IR04_16500 PF00171 Aldehyde dehydrogenase family IR04_16505 PF00696 Amino acid kinase family IR04_16505 PF01472 PUA domain IR04_16510 PF07417 Sigma factor-binding transcriptional regulator Crl IR04_16520 PF00156 Phosphoribosyl transferase domain IR04_16525 PF00860 Permease family IR04_16530 PF07687 Peptidase dimerisation domain IR04_16530 PF01546 Peptidase family M20/M25/M40 IR04_16535 PF08443 RimK-like ATP-grasp domain IR04_16535 PF18030 RimK PreATP-grasp domain IR04_16540 PF18030 RimK PreATP-grasp domain IR04_16540 PF08443 RimK-like ATP-grasp domain IR04_16550 PF00209 Sodium:neurotransmitter symporter family IR04_16555 PF17158 Membrane-associated sensor, integral membrane domain IR04_16555 PF00990 Diguanylate cyclase, GGDEF domain IR04_16560 PF00872 Transposase, Mutator family IR04_16580 PF00817 impB/mucB/samB family IR04_16580 PF11798 IMS family HHH motif IR04_16590 PF02424 ApbE family IR04_16595 PF00970 Oxidoreductase FAD-binding domain IR04_16595 PF00111 2Fe-2S iron-sulfur cluster binding domain IR04_16595 PF00175 Oxidoreductase NAD-binding domain IR04_16600 PF02508 Rnf-Nqr subunit, membrane protein IR04_16605 PF02508 Rnf-Nqr subunit, membrane protein IR04_16610 PF04205 FMN-binding domain IR04_16615 PF03116 NQR2, RnfD, RnfE family IR04_16620 PF11973 NQRA C-terminal domain IR04_16620 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) IR04_16625 PF01722 BolA-like protein IR04_16630 PF05175 Methyltransferase small domain IR04_16640 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IR04_16645 PF07690 Major Facilitator Superfamily IR04_16655 PF04545 Sigma-70, region 4 IR04_16655 PF04542 Sigma-70 region 2 IR04_16665 PF03502 Nucleoside-specific channel-forming protein, Tsx IR04_16670 PF08546 Ketopantoate reductase PanE/ApbA C terminal IR04_16670 PF02558 Ketopantoate reductase PanE/ApbA IR04_16675 PF01965 DJ-1/PfpI family IR04_16680 PF00266 Aminotransferase class-V IR04_16685 PF02657 Fe-S metabolism associated domain IR04_16690 PF00899 ThiF family IR04_16695 PF03562 MltA specific insert domain IR04_16695 PF06725 3D domain IR04_16705 PF00696 Amino acid kinase family IR04_16705 PF00583 Acetyltransferase (GNAT) family IR04_16720 PF13538 UvrD-like helicase C-terminal domain IR04_16725 PF13361 UvrD-like helicase C-terminal domain IR04_16725 PF00580 UvrD/REP helicase N-terminal domain IR04_16725 PF12705 PD-(D/E)XK nuclease superfamily IR04_16730 PF17946 RecC C-terminal domain IR04_16745 PF07130 YebG protein IR04_16750 PF14602 Hexapeptide repeat of succinyl-transferase IR04_16750 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle IR04_16760 PF00583 Acetyltransferase (GNAT) family IR04_16770 PF02080 TrkA-C domain IR04_16770 PF08443 RimK-like ATP-grasp domain IR04_16770 PF18030 RimK PreATP-grasp domain IR04_16775 PF01544 CorA-like Mg2+ transporter protein IR04_16785 PF01588 Putative tRNA binding domain IR04_16790 PF00356 Bacterial regulatory proteins, lacI family IR04_16795 PF02929 Beta galactosidase small chain IR04_16795 PF00703 Glycosyl hydrolases family 2 IR04_16795 PF02836 Glycosyl hydrolases family 2, TIM barrel domain IR04_16795 PF16353 Domain of unknown function(DUF4981) IR04_16795 PF02837 Glycosyl hydrolases family 2, sugar binding domain IR04_16805 PF00072 Response regulator receiver domain IR04_16810 PF00501 AMP-binding enzyme IR04_16815 PF03144 Elongation factor Tu domain 2 IR04_16815 PF00009 Elongation factor Tu GTP binding domain IR04_16815 PF03764 Elongation factor G, domain IV IR04_16815 PF00679 Elongation factor G C-terminus IR04_16815 PF14492 Elongation Factor G, domain II IR04_16820 PF18073 Rubredoxin metal binding domain IR04_16830 PF18429 Domain of unknown function (DUF5609) IR04_16840 PF01048 Phosphorylase superfamily IR04_16845 PF01676 Metalloenzyme superfamily IR04_16850 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain IR04_16850 PF00591 Glycosyl transferase family, a/b domain IR04_16850 PF02885 Glycosyl transferase family, helical bundle domain IR04_16855 PF01791 DeoC/LacD family aldolase IR04_16860 PF01773 Na+ dependent nucleoside transporter N-terminus IR04_16860 PF07662 Na+ dependent nucleoside transporter C-terminus IR04_16860 PF07670 Nucleoside recognition IR04_16865 PF01026 TatD related DNase IR04_16870 PF03883 Peroxide stress protein YaaA IR04_16875 PF01235 Sodium:alanine symporter family IR04_16890 PF03167 Uracil DNA glycosylase superfamily IR04_16895 PF01261 Xylose isomerase-like TIM barrel IR04_16900 PF01228 Glycine radical IR04_16905 PF14821 Threonine synthase N terminus IR04_16905 PF00291 Pyridoxal-phosphate dependent enzyme IR04_16910 PF00288 GHMP kinases N terminal domain IR04_16910 PF08544 GHMP kinases C terminal IR04_16915 PF00696 Amino acid kinase family IR04_16915 PF01842 ACT domain IR04_16915 PF13840 ACT domain IR04_16915 PF00742 Homoserine dehydrogenase IR04_16915 PF03447 Homoserine dehydrogenase, NAD binding domain IR04_16925 PF03737 Aldolase/RraA IR04_16935 PF00072 Response regulator receiver domain IR04_16935 PF00486 Transcriptional regulatory protein, C terminal IR04_16940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_16940 PF00512 His Kinase A (phospho-acceptor) domain IR04_16940 PF18415 Histidine kinase receptor ArcB trans-membrane domain IR04_16940 PF00072 Response regulator receiver domain IR04_16940 PF00989 PAS fold IR04_16940 PF01627 Hpt domain IR04_16945 PF00563 EAL domain IR04_16945 PF00360 Phytochrome region IR04_16945 PF00990 Diguanylate cyclase, GGDEF domain IR04_16945 PF01590 GAF domain IR04_16950 PF16199 Radical_SAM C-terminal domain IR04_16950 PF04055 Radical SAM superfamily IR04_16955 PF00310 Glutamine amidotransferases class-II IR04_16955 PF04898 Glutamate synthase central domain IR04_16955 PF01645 Conserved region in glutamate synthase IR04_16955 PF01493 GXGXG motif IR04_16960 PF07992 Pyridine nucleotide-disulphide oxidoreductase IR04_16960 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IR04_16965 PF01645 Conserved region in glutamate synthase IR04_16965 PF01493 GXGXG motif IR04_16965 PF00310 Glutamine amidotransferases class-II IR04_16965 PF04898 Glutamate synthase central domain IR04_16970 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IR04_16970 PF07992 Pyridine nucleotide-disulphide oxidoreductase IR04_16980 PF01048 Phosphorylase superfamily IR04_16990 PF01497 Periplasmic binding protein IR04_16995 PF03458 UPF0126 domain IR04_17000 PF03466 LysR substrate binding domain IR04_17000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_17005 PF01925 Sulfite exporter TauE/SafE IR04_17010 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IR04_17015 PF00005 ABC transporter IR04_17035 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IR04_17035 PF02142 MGS-like domain IR04_17035 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IR04_17040 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IR04_17040 PF00117 Glutamine amidotransferase class-I IR04_17050 PF05173 Dihydrodipicolinate reductase, C-terminus IR04_17050 PF01113 Dihydrodipicolinate reductase, N-terminus IR04_17055 PF00293 NUDIX domain IR04_17060 PF01043 SecA preprotein cross-linking domain IR04_17060 PF07516 SecA Wing and Scaffold domain IR04_17060 PF02810 SEC-C motif IR04_17060 PF07517 SecA DEAD-like domain IR04_17070 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IR04_17075 PF12327 FtsZ family, C-terminal domain IR04_17075 PF00091 Tubulin/FtsZ family, GTPase domain IR04_17080 PF02491 SHS2 domain inserted in FTSA IR04_17085 PF08478 POTRA domain, FtsQ-type IR04_17085 PF03799 Cell division protein FtsQ IR04_17090 PF01225 Mur ligase family, catalytic domain IR04_17090 PF08245 Mur ligase middle domain IR04_17090 PF02875 Mur ligase family, glutamate ligase domain IR04_17095 PF03033 Glycosyltransferase family 28 N-terminal domain IR04_17095 PF04101 Glycosyltransferase family 28 C-terminal domain IR04_17100 PF01098 Cell cycle protein IR04_17105 PF08245 Mur ligase middle domain IR04_17105 PF02875 Mur ligase family, glutamate ligase domain IR04_17110 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 IR04_17110 PF00953 Glycosyl transferase family 4 IR04_17115 PF08245 Mur ligase middle domain IR04_17115 PF01225 Mur ligase family, catalytic domain IR04_17115 PF02875 Mur ligase family, glutamate ligase domain IR04_17120 PF08245 Mur ligase middle domain IR04_17120 PF02875 Mur ligase family, glutamate ligase domain IR04_17120 PF01225 Mur ligase family, catalytic domain IR04_17125 PF00905 Penicillin binding protein transpeptidase domain IR04_17125 PF03717 Penicillin-binding Protein dimerisation domain IR04_17130 PF04999 Cell division protein FtsL IR04_17135 PF01795 MraW methylase family IR04_17140 PF07992 Pyridine nucleotide-disulphide oxidoreductase IR04_17140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IR04_17145 PF00364 Biotin-requiring enzyme IR04_17145 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IR04_17145 PF02817 e3 binding domain IR04_17150 PF00456 Transketolase, thiamine diphosphate binding domain IR04_17150 PF17831 Pyruvate dehydrogenase E1 component middle domain IR04_17155 PF00392 Bacterial regulatory proteins, gntR family IR04_17155 PF07729 FCD domain IR04_17160 PF00149 Calcineurin-like phosphoesterase IR04_17160 PF02872 5'-nucleotidase, C-terminal domain IR04_17165 PF01368 DHH family IR04_17165 PF02272 DHHA1 domain IR04_17165 PF17768 RecJ OB domain IR04_17170 PF10411 Disulfide bond isomerase protein N-terminus IR04_17170 PF13098 Thioredoxin-like domain IR04_17175 PF02899 Phage integrase, N-terminal SAM-like domain IR04_17175 PF00589 Phage integrase family IR04_17180 PF00258 Flavodoxin IR04_17185 PF01510 N-acetylmuramoyl-L-alanine amidase IR04_17190 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IR04_17190 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IR04_17195 PF00114 Pilin (bacterial filament) IR04_17195 PF07963 Prokaryotic N-terminal methylation motif IR04_17200 PF00437 Type II/IV secretion system protein IR04_17200 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IR04_17205 PF00482 Type II secretion system (T2SS), protein F IR04_17210 PF01478 Type IV leader peptidase family IR04_17210 PF06750 Bacterial Peptidase A24 N-terminal domain IR04_17215 PF01121 Dephospho-CoA kinase IR04_17220 PF07072 Cell division protein IR04_17230 PF03884 DNA gyrase inhibitor YacG IR04_17235 PF00521 DNA gyrase/topoisomerase IV, subunit A IR04_17235 PF03989 DNA gyrase C-terminal domain, beta-propeller IR04_17240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_17240 PF01751 Toprim domain IR04_17240 PF00204 DNA gyrase B IR04_17240 PF00986 DNA gyrase B subunit, carboxyl terminus IR04_17245 PF05728 Uncharacterised protein family (UPF0227) IR04_17250 PF00149 Calcineurin-like phosphoesterase IR04_17255 PF06853 Protein of unknown function (DUF1249) IR04_17260 PF00293 NUDIX domain IR04_17265 PF02321 Outer membrane efflux protein IR04_17270 PF00294 pfkB family carbohydrate kinase IR04_17270 PF01467 Cytidylyltransferase-like IR04_17275 PF08335 GlnD PII-uridylyltransferase IR04_17275 PF03710 Glutamate-ammonia ligase adenylyltransferase IR04_17280 PF02743 Cache domain IR04_17280 PF00672 HAMP domain IR04_17280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IR04_17290 PF01928 CYTH domain IR04_17295 PF01865 Protein of unknown function DUF47 IR04_17300 PF01384 Phosphate transporter family IR04_17305 PF08239 Bacterial SH3 domain IR04_17315 PF01471 Putative peptidoglycan binding domain IR04_17315 PF13401 AAA domain IR04_17320 PF12627 Probable RNA and SrmB- binding site of polymerase A IR04_17320 PF01966 HD domain IR04_17320 PF01743 Poly A polymerase head domain IR04_17325 PF03952 Enolase, N-terminal domain IR04_17325 PF00113 Enolase, C-terminal TIM barrel domain IR04_17330 PF06418 CTP synthase N-terminus IR04_17330 PF00117 Glutamine amidotransferase class-I IR04_17340 PF03819 MazG nucleotide pyrophosphohydrolase domain IR04_17345 PF13291 ACT domain IR04_17345 PF02824 TGS domain IR04_17345 PF04607 Region found in RelA / SpoT proteins IR04_17350 PF05958 tRNA (Uracil-5-)-methyltransferase IR04_17350 PF01938 TRAM domain IR04_17355 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IR04_17355 PF01627 Hpt domain IR04_17355 PF00512 His Kinase A (phospho-acceptor) domain IR04_17355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_17355 PF00072 Response regulator receiver domain IR04_17355 PF00672 HAMP domain IR04_17360 PF00990 Diguanylate cyclase, GGDEF domain IR04_17360 PF00563 EAL domain IR04_17375 PF01648 4'-phosphopantetheinyl transferase superfamily IR04_17380 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IR04_17385 PF11967 Recombination protein O N terminal IR04_17385 PF02565 Recombination protein O C terminal IR04_17390 PF07650 KH domain IR04_17390 PF01926 50S ribosome-binding GTPase IR04_17395 PF00035 Double-stranded RNA binding motif IR04_17395 PF14622 Ribonuclease-III-like IR04_17400 PF10502 Signal peptidase, peptidase S26 IR04_17405 PF03144 Elongation factor Tu domain 2 IR04_17405 PF00009 Elongation factor Tu GTP binding domain IR04_17405 PF06421 GTP-binding protein LepA C-terminus IR04_17405 PF00679 Elongation factor G C-terminus IR04_17415 PF03888 MucB/RseB N-terminal domain IR04_17415 PF17188 MucB/RseB C-terminal domain IR04_17420 PF03872 Anti sigma-E protein RseA, N-terminal domain IR04_17420 PF03873 Anti sigma-E protein RseA, C-terminal domain IR04_17425 PF04542 Sigma-70 region 2 IR04_17425 PF08281 Sigma-70, region 4 IR04_17430 PF00890 FAD binding domain IR04_17430 PF02910 Fumarate reductase flavoprotein C-term IR04_17440 PF03937 Flavinator of succinate dehydrogenase IR04_17455 PF01494 FAD binding domain IR04_17460 PF01494 FAD binding domain IR04_17465 PF03695 Uncharacterised protein family (UPF0149) IR04_17470 PF05164 Cell division protein ZapA IR04_17480 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IR04_17485 PF01842 ACT domain IR04_17485 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IR04_17485 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IR04_17490 PF10369 Small subunit of acetolactate synthase IR04_17495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IR04_17495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IR04_17495 PF00205 Thiamine pyrophosphate enzyme, central domain IR04_17500 PF00501 AMP-binding enzyme IR04_17505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_17505 PF03466 LysR substrate binding domain IR04_17515 PF01569 PAP2 superfamily IR04_17525 PF00682 HMGL-like IR04_17525 PF08502 LeuA allosteric (dimerisation) domain IR04_17530 PF00180 Isocitrate/isopropylmalate dehydrogenase IR04_17535 PF00330 Aconitase family (aconitate hydratase) IR04_17540 PF00694 Aconitase C-terminal domain IR04_17585 PF00072 Response regulator receiver domain IR04_17600 PF03739 Lipopolysaccharide export system permease LptF/LptG IR04_17605 PF03739 Lipopolysaccharide export system permease LptF/LptG IR04_17610 PF02789 Cytosol aminopeptidase family, N-terminal domain IR04_17610 PF00883 Cytosol aminopeptidase family, catalytic domain IR04_17615 PF04364 DNA polymerase III chi subunit, HolC IR04_17620 PF08264 Anticodon-binding domain of tRNA IR04_17620 PF00133 tRNA synthetases class I (I, L, M and V) IR04_17620 PF10458 Valyl tRNA synthetase tRNA binding arm IR04_17625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IR04_17625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IR04_17630 PF00849 RNA pseudouridylate synthase IR04_17635 PF18337 RapA N-terminal Tudor like domain IR04_17635 PF18339 RapA N-terminal Tudor like domain 1 IR04_17635 PF00176 SNF2 family N-terminal domain IR04_17635 PF12137 RNA polymerase recycling family C-terminal IR04_17635 PF00271 Helicase conserved C-terminal domain IR04_17645 PF02562 PhoH-like protein IR04_17645 PF13638 PIN domain IR04_17650 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IR04_17650 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IR04_17660 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IR04_17660 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IR04_17665 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain IR04_17665 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain IR04_17670 PF01042 Endoribonuclease L-PSP IR04_17675 PF01553 Acyltransferase IR04_17680 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IR04_17685 PF01722 BolA-like protein IR04_17695 PF05494 MlaC protein IR04_17700 PF02470 MlaD protein IR04_17705 PF02405 Permease MlaE IR04_17710 PF00005 ABC transporter IR04_17715 PF01699 Sodium/calcium exchanger protein IR04_17720 PF01380 SIS domain IR04_17720 PF00571 CBS domain IR04_17735 PF03968 OstA-like protein IR04_17740 PF12399 Branched-chain amino acid ATP-binding cassette transporter IR04_17740 PF00005 ABC transporter IR04_17745 PF00309 Sigma-54 factor, Activator interacting domain (AID) IR04_17745 PF04963 Sigma-54 factor, core binding domain IR04_17745 PF04552 Sigma-54, DNA binding domain IR04_17750 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IR04_17755 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IR04_17760 PF03668 P-loop ATPase protein family IR04_17765 PF00381 PTS HPr component phosphorylation site IR04_17770 PF00571 CBS domain IR04_17770 PF01769 Divalent cation transporter IR04_17770 PF03448 MgtE intracellular N domain IR04_17775 PF01523 Putative modulator of DNA gyrase IR04_17780 PF04751 Protein of unknown function (DUF615) IR04_17785 PF00005 ABC transporter IR04_17790 PF00528 Binding-protein-dependent transport system inner membrane component IR04_17800 PF02441 Flavoprotein IR04_17805 PF02875 Mur ligase family, glutamate ligase domain IR04_17805 PF01225 Mur ligase family, catalytic domain IR04_17805 PF08245 Mur ligase middle domain IR04_17810 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain IR04_17815 PF00719 Inorganic pyrophosphatase IR04_17820 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like IR04_17825 PF04357 TamB, inner membrane protein subunit of TAM complex IR04_17830 PF07244 Surface antigen variable number repeat IR04_17830 PF17243 POTRA domain TamA domain 1 IR04_17830 PF01103 Surface antigen IR04_17835 PF01625 Peptide methionine sulfoxide reductase IR04_17840 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) IR04_17845 PF10795 Protein of unknown function (DUF2607) IR04_17855 PF00005 ABC transporter IR04_17880 PF00009 Elongation factor Tu GTP binding domain IR04_17885 PF01507 Phosphoadenosine phosphosulfate reductase family IR04_17890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IR04_17890 PF14824 Sirohaem biosynthesis protein central IR04_17890 PF10414 Sirohaem synthase dimerisation region IR04_17895 PF02872 5'-nucleotidase, C-terminal domain IR04_17895 PF00149 Calcineurin-like phosphoesterase IR04_17905 PF00270 DEAD/DEAH box helicase IR04_17905 PF00271 Helicase conserved C-terminal domain IR04_17905 PF03880 DbpA RNA binding domain IR04_17910 PF13673 Acetyltransferase (GNAT) domain IR04_17915 PF00892 EamA-like transporter family IR04_17925 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IR04_17925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IR04_17935 PF01196 Ribosomal protein L17 IR04_17940 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IR04_17940 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IR04_17940 PF01000 RNA polymerase Rpb3/RpoA insert domain IR04_17945 PF00163 Ribosomal protein S4/S9 N-terminal domain IR04_17945 PF01479 S4 domain IR04_17950 PF00411 Ribosomal protein S11 IR04_17955 PF00416 Ribosomal protein S13/S18 IR04_17960 PF00444 Ribosomal protein L36 IR04_17965 PF00344 SecY translocase IR04_17970 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IR04_17975 PF00327 Ribosomal protein L30p/L7e IR04_17980 PF03719 Ribosomal protein S5, C-terminal domain IR04_17980 PF00333 Ribosomal protein S5, N-terminal domain IR04_17985 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IR04_17990 PF00347 Ribosomal protein L6 IR04_17995 PF00410 Ribosomal protein S8 IR04_18000 PF00253 Ribosomal protein S14p/S29e IR04_18005 PF00673 ribosomal L5P family C-terminus IR04_18005 PF00281 Ribosomal protein L5 IR04_18010 PF00467 KOW motif IR04_18010 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IR04_18015 PF00238 Ribosomal protein L14p/L23e IR04_18020 PF00366 Ribosomal protein S17 IR04_18025 PF00831 Ribosomal L29 protein IR04_18030 PF00252 Ribosomal protein L16p/L10e IR04_18035 PF07650 KH domain IR04_18035 PF00189 Ribosomal protein S3, C-terminal domain IR04_18040 PF00237 Ribosomal protein L22p/L17e IR04_18045 PF00203 Ribosomal protein S19 IR04_18050 PF00181 Ribosomal Proteins L2, RNA binding domain IR04_18050 PF03947 Ribosomal Proteins L2, C-terminal domain IR04_18055 PF00276 Ribosomal protein L23 IR04_18060 PF00573 Ribosomal protein L4/L1 family IR04_18065 PF00297 Ribosomal protein L3 IR04_18070 PF00338 Ribosomal protein S10p/S20e IR04_18080 PF00575 S1 RNA binding domain IR04_18080 PF17876 Cold shock domain IR04_18080 PF08206 Ribonuclease B OB domain IR04_18080 PF08461 Ribonuclease R winged-helix domain IR04_18080 PF00773 RNB domain IR04_18085 PF11893 Domain of unknown function (DUF3413) IR04_18085 PF00884 Sulfatase IR04_18090 PF08238 Sel1 repeat IR04_18095 PF00709 Adenylosuccinate synthetase IR04_18100 PF01112 Asparaginase IR04_18105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IR04_18115 PF02254 TrkA-N domain IR04_18115 PF00999 Sodium/hydrogen exchanger family IR04_18120 PF02525 Flavodoxin-like fold IR04_18125 PF12848 ABC transporter IR04_18125 PF00005 ABC transporter IR04_18135 PF00561 alpha/beta hydrolase fold IR04_18140 PF06794 Uncharacterised protein family (UPF0270) IR04_18145 PF00485 Phosphoribulokinase / Uridine kinase family IR04_18150 PF13545 Crp-like helix-turn-helix domain IR04_18150 PF00027 Cyclic nucleotide-binding domain IR04_18165 PF04958 Arginine N-succinyltransferase beta subunit IR04_18170 PF00202 Aminotransferase class-III IR04_18175 PF00117 Glutamine amidotransferase class-I IR04_18180 PF04055 Radical SAM superfamily IR04_18180 PF18693 TRAM domain IR04_18180 PF00919 Uncharacterized protein family UPF0004 IR04_18195 PF00579 tRNA synthetases class I (W and Y) IR04_18200 PF13419 Haloacid dehalogenase-like hydrolase IR04_18205 PF00834 Ribulose-phosphate 3 epimerase family IR04_18210 PF02086 D12 class N6 adenine-specific DNA methyltransferase IR04_18220 PF01761 3-dehydroquinate synthase IR04_18225 PF01202 Shikimate kinase IR04_18230 PF03958 Bacterial type II/III secretion system short domain IR04_18230 PF00263 Bacterial type II and III secretion system protein IR04_18230 PF11741 AMIN domain IR04_18230 PF07660 Secretin and TonB N terminus short domain IR04_18255 PF00912 Transglycosylase IR04_18255 PF17092 Penicillin-binding protein OB-like domain IR04_18255 PF00905 Penicillin binding protein transpeptidase domain IR04_18260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_18260 PF03466 LysR substrate binding domain IR04_18265 PF08534 Redoxin IR04_18265 PF00462 Glutaredoxin IR04_18270 PF07992 Pyridine nucleotide-disulphide oxidoreductase IR04_18270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IR04_18280 PF14698 Argininosuccinate lyase C-terminal IR04_18280 PF00206 Lyase IR04_18285 PF00764 Arginosuccinate synthase IR04_18290 PF00696 Amino acid kinase family IR04_18295 PF02774 Semialdehyde dehydrogenase, dimerisation domain IR04_18295 PF01118 Semialdehyde dehydrogenase, NAD binding domain IR04_18300 PF07687 Peptidase dimerisation domain IR04_18300 PF01546 Peptidase family M20/M25/M40 IR04_18305 PF00311 Phosphoenolpyruvate carboxylase IR04_18315 PF00132 Bacterial transferase hexapeptide (six repeats) IR04_18315 PF06426 Serine acetyltransferase, N-terminal IR04_18320 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IR04_18320 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IR04_18325 PF02556 Preprotein translocase subunit SecB IR04_18330 PF00581 Rhodanese-like domain IR04_18335 PF00152 tRNA synthetases class II (D, K and N) IR04_18340 PF00890 FAD binding domain IR04_18340 PF02910 Fumarate reductase flavoprotein C-term IR04_18345 PF13085 2Fe-2S iron-sulfur cluster binding domain IR04_18345 PF13183 4Fe-4S dicluster domain IR04_18350 PF02300 Fumarate reductase subunit C IR04_18355 PF02313 Fumarate reductase subunit D IR04_18360 PF09285 Elongation factor P, C-terminal IR04_18360 PF08207 Elongation factor P (EF-P) KOW-like domain IR04_18360 PF01132 Elongation factor P (EF-P) OB domain IR04_18365 PF04055 Radical SAM superfamily IR04_18375 PF00118 TCP-1/cpn60 chaperonin family IR04_18380 PF00166 Chaperonin 10 Kd subunit IR04_18385 PF00455 DeoR C terminal sensor domain IR04_18385 PF08220 DeoR-like helix-turn-helix domain IR04_18405 PF00121 Triosephosphate isomerase IR04_18415 PF03737 Aldolase/RraA IR04_18420 PF01040 UbiA prenyltransferase family IR04_18425 PF00004 ATPase family associated with various cellular activities (AAA) IR04_18425 PF10431 C-terminal, D2-small domain, of ClpB protein IR04_18425 PF07724 AAA domain (Cdc48 subfamily) IR04_18430 PF00227 Proteasome subunit IR04_18435 PF05036 Sporulation related domain IR04_18440 PF00356 Bacterial regulatory proteins, lacI family IR04_18445 PF00270 DEAD/DEAH box helicase IR04_18445 PF00271 Helicase conserved C-terminal domain IR04_18445 PF17764 3′ DNA-binding domain (3′BD) IR04_18445 PF18074 Primosomal protein N C-terminal domain IR04_18445 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IR04_18450 PF01197 Ribosomal protein L31 IR04_18455 PF00390 Malic enzyme, N-terminal domain IR04_18455 PF03949 Malic enzyme, NAD binding domain IR04_18460 PF01340 Met Apo-repressor, MetJ IR04_18465 PF01053 Cys/Met metabolism PLP-dependent enzyme IR04_18470 PF03447 Homoserine dehydrogenase, NAD binding domain IR04_18470 PF00742 Homoserine dehydrogenase IR04_18470 PF00696 Amino acid kinase family IR04_18480 PF02219 Methylenetetrahydrofolate reductase IR04_18485 PF06005 Cell division protein ZapB IR04_18490 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded IR04_18495 PF00365 Phosphofructokinase IR04_18500 PF01545 Cation efflux family IR04_18500 PF16916 Dimerisation domain of Zinc Transporter IR04_18510 PF00486 Transcriptional regulatory protein, C terminal IR04_18510 PF00072 Response regulator receiver domain IR04_18515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_18515 PF16527 Two-component sensor protein CpxA, periplasmic domain IR04_18515 PF00672 HAMP domain IR04_18515 PF00512 His Kinase A (phospho-acceptor) domain IR04_18520 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IR04_18520 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IR04_18525 PF00588 SpoU rRNA Methylase family IR04_18530 PF04186 FxsA cytoplasmic membrane protein IR04_18535 PF17158 Membrane-associated sensor, integral membrane domain IR04_18535 PF00990 Diguanylate cyclase, GGDEF domain IR04_18540 PF00206 Lyase IR04_18540 PF10415 Fumarase C C-terminus IR04_18545 PF03605 Anaerobic c4-dicarboxylate membrane transporter IR04_18555 PF17967 Pullulanase N2 domain IR04_18555 PF18494 Pullulanase Ins domain IR04_18555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IR04_18555 PF03714 Bacterial pullanase-associated domain IR04_18555 PF11852 Domain of unknown function (DUF3372) IR04_18560 PF02683 Cytochrome C biogenesis protein transmembrane region IR04_18560 PF11412 Disulphide bond corrector protein DsbC IR04_18565 PF00072 Response regulator receiver domain IR04_18565 PF00196 Bacterial regulatory proteins, luxR family IR04_18570 PF02080 TrkA-C domain IR04_18570 PF03471 Transporter associated domain IR04_18570 PF00999 Sodium/hydrogen exchanger family IR04_18580 PF00474 Sodium:solute symporter family IR04_18585 PF02592 Putative vitamin uptake transporter IR04_18590 PF00625 Guanylate kinase IR04_18595 PF01192 RNA polymerase Rpb6 IR04_18600 PF13291 ACT domain IR04_18600 PF04607 Region found in RelA / SpoT proteins IR04_18600 PF02824 TGS domain IR04_18605 PF17191 RecG wedge domain IR04_18605 PF00271 Helicase conserved C-terminal domain IR04_18605 PF00270 DEAD/DEAH box helicase IR04_18610 PF00860 Permease family IR04_18620 PF00486 Transcriptional regulatory protein, C terminal IR04_18620 PF00072 Response regulator receiver domain IR04_18625 PF01272 Transcription elongation factor, GreA/GreB, C-term IR04_18625 PF03449 Transcription elongation factor, N-terminal IR04_18630 PF09371 Tex-like protein N-terminal domain IR04_18630 PF17674 HHH domain IR04_18630 PF16921 Tex protein YqgF-like domain IR04_18630 PF00575 S1 RNA binding domain IR04_18640 PF00561 alpha/beta hydrolase fold IR04_18645 PF00156 Phosphoribosyl transferase domain IR04_18650 PF01521 Iron-sulphur cluster biosynthesis IR04_18650 PF01106 NifU-like domain IR04_18655 PF00293 NUDIX domain IR04_18660 PF00459 Inositol monophosphatase family IR04_18665 PF01203 Type II secretion system (T2SS), protein N IR04_18670 PF04612 Type II secretion system (T2SS), protein M IR04_18675 PF05134 Type II secretion system (T2SS), protein L IR04_18675 PF12693 GspL periplasmic domain IR04_18680 PF03934 Type II secretion system (T2SS), protein K IR04_18685 PF11612 Type II secretion system (T2SS), protein J IR04_18685 PF07963 Prokaryotic N-terminal methylation motif IR04_18690 PF07963 Prokaryotic N-terminal methylation motif IR04_18690 PF02501 Type II secretion system (T2SS), protein I IR04_18695 PF12019 Type II transport protein GspH IR04_18700 PF08334 Type II secretion system (T2SS), protein G IR04_18700 PF07963 Prokaryotic N-terminal methylation motif IR04_18705 PF00482 Type II secretion system (T2SS), protein F IR04_18710 PF00437 Type II/IV secretion system protein IR04_18715 PF00263 Bacterial type II and III secretion system protein IR04_18715 PF03958 Bacterial type II/III secretion system short domain IR04_18720 PF11356 Type II secretion system protein C IR04_18725 PF01479 S4 domain IR04_18730 PF01430 Hsp33 protein IR04_18735 PF01293 Phosphoenolpyruvate carboxykinase IR04_18745 PF09500 Putative thioesterase (yiiD_Cterm) IR04_18745 PF00583 Acetyltransferase (GNAT) family IR04_18750 PF02580 D-Tyr-tRNA(Tyr) deacylase IR04_18755 PF03631 Virulence factor BrkB IR04_18775 PF00120 Glutamine synthetase, catalytic domain IR04_18775 PF03951 Glutamine synthetase, beta-Grasp domain IR04_18790 PF00989 PAS fold IR04_18790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IR04_18790 PF00512 His Kinase A (phospho-acceptor) domain IR04_18795 PF00158 Sigma-54 interaction domain IR04_18795 PF02954 Bacterial regulatory protein, Fis family IR04_18795 PF00072 Response regulator receiver domain IR04_18800 PF00990 Diguanylate cyclase, GGDEF domain IR04_18800 PF03707 Bacterial signalling protein N terminal repeat IR04_18800 PF13188 PAS domain IR04_18800 PF00563 EAL domain IR04_18805 PF00962 Adenosine/AMP deaminase IR04_18870 PF12724 Flavodoxin domain IR04_18875 PF02386 Cation transport protein IR04_18880 PF09186 Domain of unknown function (DUF1949) IR04_18880 PF01205 Uncharacterized protein family UPF0029 IR04_18885 PF00378 Enoyl-CoA hydratase/isomerase IR04_18885 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IR04_18885 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IR04_18890 PF00108 Thiolase, N-terminal domain IR04_18890 PF02803 Thiolase, C-terminal domain IR04_18895 PF03466 LysR substrate binding domain IR04_18895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IR04_18900 PF07690 Major Facilitator Superfamily IR04_18905 PF12804 MobA-like NTP transferase domain IR04_18905 PF00132 Bacterial transferase hexapeptide (six repeats) IR04_18910 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IR04_18910 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain IR04_18915 PF02874 ATP synthase alpha/beta family, beta-barrel domain IR04_18915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IR04_18920 PF00231 ATP synthase IR04_18925 PF02874 ATP synthase alpha/beta family, beta-barrel domain IR04_18925 PF00306 ATP synthase alpha/beta chain, C terminal domain IR04_18925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IR04_18930 PF00213 ATP synthase delta (OSCP) subunit IR04_18935 PF00430 ATP synthase B/B' CF(0) IR04_18940 PF00137 ATP synthase subunit C IR04_18945 PF00119 ATP synthase A chain IR04_18950 PF03899 ATP synthase I chain IR04_18955 PF17762 HTH domain found in ParB protein IR04_18955 PF02195 ParB-like nuclease domain IR04_18960 PF13614 AAA domain IR04_18965 PF02527 rRNA small subunit methyltransferase G IR04_18970 PF01134 Glucose inhibited division protein A IR04_18970 PF13932 GidA associated domain