IR04_00035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_00035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_00035 SM01049 IR04_00035 IR04_00045 SM00421 helix_turn_helix, Lux Regulon IR04_00060 SM00642 Alpha-amylase domain IR04_00115 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins IR04_00115 SM00495 Chitin-binding domain type 3 IR04_00115 SM00636 IR04_00115 IR04_00135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_00135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_00155 SM00014 Acid phosphatase homologues IR04_00200 SM00245 tail specific protease IR04_00215 SM00267 diguanylate cyclase IR04_00220 SM00028 Tetratricopeptide repeats IR04_00240 SM00422 helix_turn_helix, mercury resistance IR04_00250 SM00257 Lysin motif IR04_00290 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_00290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_00310 SM00382 ATPases associated with a variety of cellular activities IR04_00315 SM00267 diguanylate cyclase IR04_00345 SM00052 Putative diguanylate phosphodiesterase IR04_00345 SM00267 diguanylate cyclase IR04_00360 SM00422 helix_turn_helix, mercury resistance IR04_00435 SM00450 Rhodanese Homology Domain IR04_00440 SM00052 Putative diguanylate phosphodiesterase IR04_00515 SM00382 ATPases associated with a variety of cellular activities IR04_00515 SM01086 C-terminal, D2-small domain, of ClpB protein IR04_00520 SM00382 ATPases associated with a variety of cellular activities IR04_00565 SM00382 ATPases associated with a variety of cellular activities IR04_00585 SM00354 helix_turn _helix lactose operon repressor IR04_00605 SM00100 Cyclic nucleotide-monophosphate binding domain IR04_00630 SM00091 PAS domain IR04_00630 SM00387 Histidine kinase-like ATPases IR04_00630 SM00388 His Kinase A (phosphoacceptor) domain IR04_00635 SM00382 ATPases associated with a variety of cellular activities IR04_00635 SM00448 cheY-homologous receiver domain IR04_00740 SM00267 diguanylate cyclase IR04_00745 SM00357 Cold shock protein domain IR04_00760 SM00028 Tetratricopeptide repeats IR04_00765 SM00327 von Willebrand factor (vWF) type A domain IR04_00785 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_00785 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_00815 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. IR04_00815 SM00382 ATPases associated with a variety of cellular activities IR04_00825 SM00357 Cold shock protein domain IR04_00880 SM01240 IR04_00880 IR04_00905 SM01321 IR04_00905 IR04_00910 SM00487 DEAD-like helicases superfamily IR04_00910 SM00490 helicase superfamily c-terminal domain IR04_00930 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IR04_00935 SM00387 Histidine kinase-like ATPases IR04_00960 SM00267 diguanylate cyclase IR04_00970 SM00458 Ricin-type beta-trefoil IR04_00975 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_00975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_00990 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins IR04_01020 SM00382 ATPases associated with a variety of cellular activities IR04_01025 SM00342 helix_turn_helix, arabinose operon control protein IR04_01055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_01055 SM00387 Histidine kinase-like ATPases IR04_01055 SM00388 His Kinase A (phosphoacceptor) domain IR04_01060 SM00448 cheY-homologous receiver domain IR04_01060 SM00862 Transcriptional regulatory protein, C terminal IR04_01080 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family IR04_01090 SM01007 Class II Aldolase and Adducin N-terminal domain IR04_01105 SM00420 helix_turn_helix, Deoxyribose operon repressor IR04_01105 SM01134 IR04_01105 IR04_01145 SM00448 cheY-homologous receiver domain IR04_01145 SM00862 Transcriptional regulatory protein, C terminal IR04_01150 SM00387 Histidine kinase-like ATPases IR04_01150 SM00388 His Kinase A (phosphoacceptor) domain IR04_01180 SM00422 helix_turn_helix, mercury resistance IR04_01190 SM00342 helix_turn_helix, arabinose operon control protein IR04_01200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_01200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_01210 SM00936 Penicillin-binding protein 5, C-terminal domain IR04_01225 SM01057 Eukaryotic-type carbonic anhydrase IR04_01230 SM01321 IR04_01230 IR04_01250 SM00530 Helix-turn-helix XRE-family like proteins IR04_01290 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain IR04_01375 SM00507 HNH nucleases IR04_01380 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IR04_01760 SM00530 Helix-turn-helix XRE-family like proteins IR04_02030 SM01321 IR04_02030 IR04_02155 SM00354 helix_turn _helix lactose operon repressor IR04_02170 SM00387 Histidine kinase-like ATPases IR04_02170 SM00448 cheY-homologous receiver domain IR04_02190 SM00833 Cobalamin synthesis protein cobW C-terminal domain IR04_02205 SM00890 Domain of unknown function IR04_02210 SM00387 Histidine kinase-like ATPases IR04_02210 SM00388 His Kinase A (phosphoacceptor) domain IR04_02215 SM00448 cheY-homologous receiver domain IR04_02215 SM00862 Transcriptional regulatory protein, C terminal IR04_02235 SM00052 Putative diguanylate phosphodiesterase IR04_02250 SM00867 YceI-like domain IR04_02295 SM00782 PhnA Zinc-Ribbon IR04_02335 SM00062 Bacterial periplasmic substrate-binding proteins IR04_02335 SM00267 diguanylate cyclase IR04_02355 SM00267 diguanylate cyclase IR04_02370 SM01002 Alanine dehydrogenase/PNT, C-terminal domain IR04_02370 SM01003 Alanine dehydrogenase/PNT, N-terminal domain IR04_02380 SM00387 Histidine kinase-like ATPases IR04_02380 SM00388 His Kinase A (phosphoacceptor) domain IR04_02385 SM00448 cheY-homologous receiver domain IR04_02385 SM00862 Transcriptional regulatory protein, C terminal IR04_02430 SM00881 CoA binding domain IR04_02495 SM00382 ATPases associated with a variety of cellular activities IR04_02545 SM00345 helix_turn_helix gluconate operon transcriptional repressor IR04_02545 SM00866 IR04_02545 IR04_02555 SM00382 ATPases associated with a variety of cellular activities IR04_02620 SM00852 Probable molybdopterin binding domain IR04_02635 SM00450 Rhodanese Homology Domain IR04_02655 SM00861 Transketolase, pyrimidine binding domain IR04_02740 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor IR04_02750 SM00450 Rhodanese Homology Domain IR04_02760 SM00563 Phosphate acyltransferases IR04_02800 SM00354 helix_turn _helix lactose operon repressor IR04_02805 SM00640 Glycosyl hydrolases family 32 IR04_02820 SM00091 PAS domain IR04_02820 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_02840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_02840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_02870 SM00354 helix_turn _helix lactose operon repressor IR04_02875 SM00421 helix_turn_helix, Lux Regulon IR04_02875 SM00448 cheY-homologous receiver domain IR04_02880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_02880 SM00387 Histidine kinase-like ATPases IR04_02895 SM00926 Molybdopterin oxidoreductase Fe4S4 domain IR04_02915 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IR04_02920 SM00421 helix_turn_helix, Lux Regulon IR04_02920 SM00448 cheY-homologous receiver domain IR04_02925 SM00387 Histidine kinase-like ATPases IR04_02945 SM00382 ATPases associated with a variety of cellular activities IR04_02965 SM00822 IR04_02965 IR04_02990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) IR04_02990 SM00267 diguanylate cyclase IR04_03000 SM00495 Chitin-binding domain type 3 IR04_03000 SM00636 IR04_03000 IR04_03015 SM00448 cheY-homologous receiver domain IR04_03020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_03020 SM00387 Histidine kinase-like ATPases IR04_03020 SM00388 His Kinase A (phosphoacceptor) domain IR04_03040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_03040 SM00387 Histidine kinase-like ATPases IR04_03040 SM00388 His Kinase A (phosphoacceptor) domain IR04_03040 SM00448 cheY-homologous receiver domain IR04_03050 SM00851 MGS-like domain IR04_03085 SM00387 Histidine kinase-like ATPases IR04_03090 SM00989 IR04_03090 IR04_03110 SM00382 ATPases associated with a variety of cellular activities IR04_03170 SM00387 Histidine kinase-like ATPases IR04_03170 SM00388 His Kinase A (phosphoacceptor) domain IR04_03170 SM00448 cheY-homologous receiver domain IR04_03295 SM00062 Bacterial periplasmic substrate-binding proteins IR04_03295 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IR04_03300 SM00382 ATPases associated with a variety of cellular activities IR04_03310 SM00327 von Willebrand factor (vWF) type A domain IR04_03315 SM00382 ATPases associated with a variety of cellular activities IR04_03340 SM00487 DEAD-like helicases superfamily IR04_03340 SM00490 helicase superfamily c-terminal domain IR04_03360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_03360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_03375 SM00796 Allophanate hydrolase subunit 1 IR04_03380 SM00797 Allophanate hydrolase subunit 2 IR04_03390 SM00984 UDP binding domain IR04_03400 SM00382 ATPases associated with a variety of cellular activities IR04_03415 SM00052 Putative diguanylate phosphodiesterase IR04_03415 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. IR04_03415 SM00267 diguanylate cyclase IR04_03430 SM00271 DnaJ molecular chaperone homology domain IR04_03465 SM00857 Resolvase, N terminal domain IR04_03500 SM00020 Trypsin-like serine protease IR04_03505 SM00487 DEAD-like helicases superfamily IR04_03505 SM00490 helicase superfamily c-terminal domain IR04_03510 SM00357 Cold shock protein domain IR04_03510 SM00955 IR04_03510 IR04_03565 SM00924 MgtE intracellular N domain IR04_03570 SM00883 Chaperonin 10 Kd subunit IR04_03650 SM01266 IR04_03650 IR04_03655 SM01091 Transporter associated domain IR04_03670 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IR04_03690 SM00267 diguanylate cyclase IR04_03700 SM00448 cheY-homologous receiver domain IR04_03700 SM00850 LytTr DNA-binding domain IR04_03705 SM00387 Histidine kinase-like ATPases IR04_03725 SM00382 ATPases associated with a variety of cellular activities IR04_03745 SM00642 Alpha-amylase domain IR04_03770 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) IR04_03770 SM00091 PAS domain IR04_03770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_03795 SM00345 helix_turn_helix gluconate operon transcriptional repressor IR04_03860 SM00829 Enoylreductase IR04_03880 SM00421 helix_turn_helix, Lux Regulon IR04_03915 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IR04_03930 SM01350 IR04_03930 IR04_03940 SM00849 Metallo-beta-lactamase superfamily IR04_03970 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_03970 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_03985 SM00729 Elongator protein 3, MiaB family, Radical SAM IR04_04015 SM00382 ATPases associated with a variety of cellular activities IR04_04045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_04045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_04085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IR04_04090 SM00357 Cold shock protein domain IR04_04105 SM00342 helix_turn_helix, arabinose operon control protein IR04_04115 SM00091 PAS domain IR04_04115 SM00267 diguanylate cyclase IR04_04120 SM00420 helix_turn_helix, Deoxyribose operon repressor IR04_04120 SM01134 IR04_04120 IR04_04150 SM00382 ATPases associated with a variety of cellular activities IR04_04165 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. IR04_04175 SM00421 helix_turn_helix, Lux Regulon IR04_04185 SM00260 Two component signalling adaptor domain IR04_04185 SM00448 cheY-homologous receiver domain IR04_04190 SM00347 helix_turn_helix multiple antibiotic resistance protein IR04_04195 SM00267 diguanylate cyclase IR04_04210 SM00267 diguanylate cyclase IR04_04210 SM01079 IR04_04210 IR04_04235 SM00267 diguanylate cyclase IR04_04275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_04275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_04290 SM00382 ATPases associated with a variety of cellular activities IR04_04295 SM00062 Bacterial periplasmic substrate-binding proteins IR04_04300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_04350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_04360 SM00487 DEAD-like helicases superfamily IR04_04360 SM00490 helicase superfamily c-terminal domain IR04_04385 SM00382 ATPases associated with a variety of cellular activities IR04_04410 SM00342 helix_turn_helix, arabinose operon control protein IR04_04430 SM00347 helix_turn_helix multiple antibiotic resistance protein IR04_04480 SM00342 helix_turn_helix, arabinose operon control protein IR04_04480 SM01009 AlkA N-terminal domain IR04_04515 SM00671 Sel1-like repeats. IR04_04530 SM00642 Alpha-amylase domain IR04_04540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_04540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_04555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_04555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_04570 SM00382 ATPases associated with a variety of cellular activities IR04_04580 SM00062 Bacterial periplasmic substrate-binding proteins IR04_04630 SM00849 Metallo-beta-lactamase superfamily IR04_04650 SM00450 Rhodanese Homology Domain IR04_04665 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_04665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_04710 SM00344 helix_turn_helix ASNC type IR04_04715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_04715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_04740 SM00342 helix_turn_helix, arabinose operon control protein IR04_04755 SM00421 helix_turn_helix, Lux Regulon IR04_04775 SM00052 Putative diguanylate phosphodiesterase IR04_04775 SM00267 diguanylate cyclase IR04_04780 SM00382 ATPases associated with a variety of cellular activities IR04_04790 SM00331 Sigma factor PP2C-like phosphatases IR04_04790 SM00448 cheY-homologous receiver domain IR04_04800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_04805 SM00448 cheY-homologous receiver domain IR04_04815 SM00138 Methyltransferase, chemotaxis proteins IR04_04820 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_04820 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_04825 SM00260 Two component signalling adaptor domain IR04_04830 SM00260 Two component signalling adaptor domain IR04_04835 SM00073 Histidine Phosphotransfer domain IR04_04835 SM00260 Two component signalling adaptor domain IR04_04835 SM00387 Histidine kinase-like ATPases IR04_04835 SM01231 IR04_04835 IR04_04840 SM00448 cheY-homologous receiver domain IR04_04880 SM00387 Histidine kinase-like ATPases IR04_04880 SM00388 His Kinase A (phosphoacceptor) domain IR04_04885 SM00448 cheY-homologous receiver domain IR04_04885 SM00862 Transcriptional regulatory protein, C terminal IR04_04895 SM00822 IR04_04895 IR04_04900 SM01236 IR04_04900 IR04_04925 SM00470 ParB-like nuclease domain IR04_04960 SM00382 ATPases associated with a variety of cellular activities IR04_04970 SM00062 Bacterial periplasmic substrate-binding proteins IR04_04975 SM00382 ATPases associated with a variety of cellular activities IR04_04975 SM00760 Bacterial dnaA protein helix-turn-helix domain IR04_04980 SM00480 DNA polymerase III beta subunit IR04_04990 SM00387 Histidine kinase-like ATPases IR04_04990 SM00433 TopoisomeraseII IR04_05045 SM00829 Enoylreductase IR04_05075 SM00382 ATPases associated with a variety of cellular activities IR04_05080 SM00563 Phosphate acyltransferases IR04_05150 SM00257 Lysin motif IR04_05175 SM01001 AIR carboxylase IR04_05270 SM00876 Biotin and Thiamin Synthesis associated domain IR04_05295 SM00344 helix_turn_helix ASNC type IR04_05300 SM00052 Putative diguanylate phosphodiesterase IR04_05300 SM00091 PAS domain IR04_05300 SM00267 diguanylate cyclase IR04_05400 SM00563 Phosphate acyltransferases IR04_05420 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) IR04_05420 SM00091 PAS domain IR04_05420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_05435 SM00450 Rhodanese Homology Domain IR04_05445 SM01004 Delta-aminolevulinic acid dehydratase IR04_05455 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs IR04_05455 SM00474 3'-5' exonuclease IR04_05455 SM00475 5'-3' exonuclease IR04_05455 SM00482 DNA polymerase A domain IR04_05485 SM00729 Elongator protein 3, MiaB family, Radical SAM IR04_05520 SM01219 IR04_05520 IR04_05555 SM00052 Putative diguanylate phosphodiesterase IR04_05555 SM00267 diguanylate cyclase IR04_05555 SM00897 FIST N domain IR04_05555 SM01204 IR04_05555 IR04_05560 SM01144 IR04_05560 IR04_05630 SM00382 ATPases associated with a variety of cellular activities IR04_05630 SM00962 SRP54-type protein, GTPase domain IR04_05630 SM00963 SRP54-type protein, helical bundle domain IR04_05635 SM00382 ATPases associated with a variety of cellular activities IR04_05685 SM00360 RNA recognition motif IR04_05785 SM00382 ATPases associated with a variety of cellular activities IR04_05820 SM00530 Helix-turn-helix XRE-family like proteins IR04_05900 SM00342 helix_turn_helix, arabinose operon control protein IR04_05915 SM00341 Helicase and RNase D C-terminal IR04_05915 SM00487 DEAD-like helicases superfamily IR04_05915 SM00490 helicase superfamily c-terminal domain IR04_05915 SM00956 IR04_05915 IR04_05930 SM00382 ATPases associated with a variety of cellular activities IR04_05940 SM00382 ATPases associated with a variety of cellular activities IR04_06010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_06010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_06010 SM01049 IR04_06010 IR04_06035 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain IR04_06035 SM01232 IR04_06035 IR04_06160 SM00382 ATPases associated with a variety of cellular activities IR04_06225 SM00849 Metallo-beta-lactamase superfamily IR04_06225 SM01027 Beta-Casp domain IR04_06235 SM00986 Uracil DNA glycosylase superfamily IR04_06235 SM00987 UreE urease accessory protein, C-terminal domain IR04_06265 SM00411 bacterial (prokaryotic) histone like domain IR04_06275 SM01209 IR04_06275 IR04_06275 SM01210 IR04_06275 IR04_06280 SM00798 AICARFT/IMPCHase bienzyme IR04_06280 SM00851 MGS-like domain IR04_06290 SM00422 helix_turn_helix, mercury resistance IR04_06295 SM00862 Transcriptional regulatory protein, C terminal IR04_06310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_06310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_06310 SM01049 IR04_06310 IR04_06350 SM00354 helix_turn _helix lactose operon repressor IR04_06370 SM00878 Biotin carboxylase C-terminal domain IR04_06390 SM00479 IR04_06390 IR04_06405 SM00387 Histidine kinase-like ATPases IR04_06405 SM00388 His Kinase A (phosphoacceptor) domain IR04_06405 SM00448 cheY-homologous receiver domain IR04_06415 SM00487 DEAD-like helicases superfamily IR04_06415 SM00490 helicase superfamily c-terminal domain IR04_06425 SM00357 Cold shock protein domain IR04_06425 SM00382 ATPases associated with a variety of cellular activities IR04_06425 SM00959 Rho termination factor, N-terminal domain IR04_06480 SM00155 Phospholipase D. Active site motifs. IR04_06535 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. IR04_06535 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. IR04_06540 SM00649 Ribosomal protein L11/L12 IR04_06565 SM00663 RNA polymerase I subunit A N-terminus IR04_06625 SM00479 IR04_06625 IR04_06685 SM00257 Lysin motif IR04_06685 SM00646 IR04_06685 IR04_06690 SM00853 MutL C terminal dimerisation domain IR04_06690 SM01340 IR04_06690 IR04_06710 SM00244 prohibitin homologues IR04_06715 SM00244 prohibitin homologues IR04_06730 SM00320 WD40 repeats IR04_06770 SM00838 Elongation factor G C-terminus IR04_06770 SM00889 Elongation factor G, domain IV IR04_06815 SM00382 ATPases associated with a variety of cellular activities IR04_06820 SM01005 Alanine racemase, C-terminal domain IR04_06920 SM01018 B12 binding domain IR04_06950 SM00421 helix_turn_helix, Lux Regulon IR04_06960 SM00052 Putative diguanylate phosphodiesterase IR04_06960 SM00267 diguanylate cyclase IR04_06980 SM00965 Secretin and TonB N terminus short domain IR04_06990 SM00028 Tetratricopeptide repeats IR04_06995 SM00382 ATPases associated with a variety of cellular activities IR04_07065 SM00316 Ribosomal protein S1-like RNA-binding domain IR04_07190 SM00650 Ribosomal RNA adenine dimethylases IR04_07210 SM00271 DnaJ molecular chaperone homology domain IR04_07240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_07240 SM01049 IR04_07240 IR04_07275 SM00478 endonuclease III IR04_07275 SM00525 IR04_07275 IR04_07290 SM00729 Elongator protein 3, MiaB family, Radical SAM IR04_07305 SM01152 IR04_07305 IR04_07325 SM00382 ATPases associated with a variety of cellular activities IR04_07335 SM00421 helix_turn_helix, Lux Regulon IR04_07340 SM00363 S4 RNA-binding domain IR04_07345 SM00732 Likely ribonuclease with RNase H fold. IR04_07370 SM00731 SprT homologues. IR04_07385 SM00861 Transketolase, pyrimidine binding domain IR04_07400 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IR04_07450 SM00420 helix_turn_helix, Deoxyribose operon repressor IR04_07450 SM01134 IR04_07450 IR04_07465 SM00563 Phosphate acyltransferases IR04_07510 SM00342 helix_turn_helix, arabinose operon control protein IR04_07540 SM00400 zinc finger IR04_07540 SM00493 IR04_07540 IR04_07540 SM00766 DNA primase DnaG DnaB-binding IR04_07565 SM01207 IR04_07565 IR04_07570 SM00905 Dihydroneopterin aldolase IR04_07615 SM00257 Lysin motif IR04_07625 SM00533 DNA-binding domain of DNA mismatch repair MUTS family IR04_07625 SM00534 ATPase domain of DNA mismatch repair MUTS family IR04_07650 SM00382 ATPases associated with a variety of cellular activities IR04_07660 SM00382 ATPases associated with a variety of cellular activities IR04_07670 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain IR04_07745 SM00829 Enoylreductase IR04_07770 SM01091 Transporter associated domain IR04_07780 SM00382 ATPases associated with a variety of cellular activities IR04_07780 SM00962 SRP54-type protein, GTPase domain IR04_07780 SM00963 SRP54-type protein, helical bundle domain IR04_07805 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IR04_07860 SM00749 bacterial OsmY and nodulation domain IR04_07895 SM00947 Carbonic anhydrase IR04_07905 SM00382 ATPases associated with a variety of cellular activities IR04_07955 SM00487 DEAD-like helicases superfamily IR04_07955 SM00490 helicase superfamily c-terminal domain IR04_07955 SM00847 Helicase associated domain (HA2) Add an annotation IR04_07980 SM00938 Nitrogen regulatory protein P-II IR04_08000 SM00382 ATPases associated with a variety of cellular activities IR04_08010 SM01068 Putative carbohydrate binding domain IR04_08030 SM00382 ATPases associated with a variety of cellular activities IR04_08035 SM00382 ATPases associated with a variety of cellular activities IR04_08055 SM00091 PAS domain IR04_08055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_08055 SM00387 Histidine kinase-like ATPases IR04_08055 SM00388 His Kinase A (phosphoacceptor) domain IR04_08055 SM00448 cheY-homologous receiver domain IR04_08100 SM00363 S4 RNA-binding domain IR04_08120 SM01103 IR04_08120 IR04_08130 SM00382 ATPases associated with a variety of cellular activities IR04_08165 SM00316 Ribosomal protein S1-like RNA-binding domain IR04_08165 SM00322 K homology RNA-binding domain IR04_08185 SM01387 IR04_08185 IR04_08190 SM00316 Ribosomal protein S1-like RNA-binding domain IR04_08190 SM00322 K homology RNA-binding domain IR04_08195 SM00028 Tetratricopeptide repeats IR04_08200 SM00347 helix_turn_helix multiple antibiotic resistance protein IR04_08220 SM00052 Putative diguanylate phosphodiesterase IR04_08220 SM00091 PAS domain IR04_08220 SM00267 diguanylate cyclase IR04_08245 SM00052 Putative diguanylate phosphodiesterase IR04_08245 SM00267 diguanylate cyclase IR04_08370 SM00479 IR04_08370 IR04_08425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IR04_08535 SM00382 ATPases associated with a variety of cellular activities IR04_08585 SM00382 ATPases associated with a variety of cellular activities IR04_08605 SM00327 von Willebrand factor (vWF) type A domain IR04_08620 SM00778 Zinc-binding domain of primase-helicase IR04_08635 SM00342 helix_turn_helix, arabinose operon control protein IR04_08645 SM00530 Helix-turn-helix XRE-family like proteins IR04_08715 SM00530 Helix-turn-helix XRE-family like proteins IR04_08725 SM00487 DEAD-like helicases superfamily IR04_08725 SM00490 helicase superfamily c-terminal domain IR04_08740 SM00937 IR04_08740 IR04_08750 SM00382 ATPases associated with a variety of cellular activities IR04_08765 SM00927 DNA mismatch repair enzyme MutH IR04_08780 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. IR04_08810 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor IR04_08825 SM00904 Riboflavin kinase IR04_08880 SM00448 cheY-homologous receiver domain IR04_08880 SM00850 LytTr DNA-binding domain IR04_08895 SM00830 Chorismate mutase type II IR04_08905 SM00382 ATPases associated with a variety of cellular activities IR04_08925 SM00052 Putative diguanylate phosphodiesterase IR04_08925 SM00267 diguanylate cyclase IR04_08935 SM00830 Chorismate mutase type II IR04_08950 SM00363 S4 RNA-binding domain IR04_08960 SM00382 ATPases associated with a variety of cellular activities IR04_08960 SM01086 C-terminal, D2-small domain, of ClpB protein IR04_09015 SM00448 cheY-homologous receiver domain IR04_09015 SM00862 Transcriptional regulatory protein, C terminal IR04_09020 SM00091 PAS domain IR04_09020 SM00387 Histidine kinase-like ATPases IR04_09020 SM00388 His Kinase A (phosphoacceptor) domain IR04_09050 SM00382 ATPases associated with a variety of cellular activities IR04_09090 SM00116 Domain in cystathionine beta-synthase and other proteins. IR04_09105 SM01323 IR04_09105 IR04_09150 SM00271 DnaJ molecular chaperone homology domain IR04_09175 SM00562 IR04_09175 IR04_09185 SM00530 Helix-turn-helix XRE-family like proteins IR04_09205 SM00564 beta-propeller repeat IR04_09210 SM00382 ATPases associated with a variety of cellular activities IR04_09230 SM00116 Domain in cystathionine beta-synthase and other proteins. IR04_09230 SM01240 IR04_09230 IR04_09245 SM00495 Chitin-binding domain type 3 IR04_09295 SM00382 ATPases associated with a variety of cellular activities IR04_09310 SM00849 Metallo-beta-lactamase superfamily IR04_09340 SM00448 cheY-homologous receiver domain IR04_09345 SM00091 PAS domain IR04_09345 SM00387 Histidine kinase-like ATPases IR04_09370 SM00764 Citrate lyase ligase C-terminal domain IR04_09440 SM00487 DEAD-like helicases superfamily IR04_09440 SM00490 helicase superfamily c-terminal domain IR04_09450 SM00530 Helix-turn-helix XRE-family like proteins IR04_09480 SM00060 Fibronectin type 3 domain IR04_09485 SM00247 Beta/gamma crystallins IR04_09500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_09505 SM00862 Transcriptional regulatory protein, C terminal IR04_09565 SM00342 helix_turn_helix, arabinose operon control protein IR04_09575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_09575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_09605 SM01276 IR04_09605 IR04_09660 SM00271 DnaJ molecular chaperone homology domain IR04_09705 SM00062 Bacterial periplasmic substrate-binding proteins IR04_09720 SM01321 IR04_09720 IR04_09800 SM00861 Transketolase, pyrimidine binding domain IR04_09825 SM00981 IR04_09825 IR04_09855 SM00267 diguanylate cyclase IR04_09860 SM00028 Tetratricopeptide repeats IR04_09890 SM00382 ATPases associated with a variety of cellular activities IR04_09890 SM00930 IR04_09890 IR04_09900 SM00354 helix_turn _helix lactose operon repressor IR04_09910 SM00642 Alpha-amylase domain IR04_09940 SM00226 Low molecular weight phosphatase family IR04_09950 SM00984 UDP binding domain IR04_10005 SM00710 Parallel beta-helix repeats IR04_10070 SM00729 Elongator protein 3, MiaB family, Radical SAM IR04_10085 SM00936 Penicillin-binding protein 5, C-terminal domain IR04_10140 SM00116 Domain in cystathionine beta-synthase and other proteins. IR04_10140 SM01091 Transporter associated domain IR04_10155 SM00729 Elongator protein 3, MiaB family, Radical SAM IR04_10190 SM00771 ZipA, C-terminal domain (FtsZ-binding) IR04_10195 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IR04_10195 SM00292 breast cancer carboxy-terminal domain IR04_10195 SM00532 Ligase N family IR04_10210 SM00422 helix_turn_helix, mercury resistance IR04_10220 SM00244 prohibitin homologues IR04_10260 SM00862 Transcriptional regulatory protein, C terminal IR04_10265 SM00387 Histidine kinase-like ATPases IR04_10285 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. IR04_10285 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. IR04_10360 SM00479 IR04_10360 IR04_10385 SM00478 endonuclease III IR04_10385 SM00525 IR04_10385 IR04_10395 SM00900 IR04_10395 IR04_10430 SM00487 DEAD-like helicases superfamily IR04_10430 SM00490 helicase superfamily c-terminal domain IR04_10440 SM00382 ATPases associated with a variety of cellular activities IR04_10440 SM00448 cheY-homologous receiver domain IR04_10455 SM00729 Elongator protein 3, MiaB family, Radical SAM IR04_10460 SM00852 Probable molybdopterin binding domain IR04_10480 SM00267 diguanylate cyclase IR04_10485 SM00116 Domain in cystathionine beta-synthase and other proteins. IR04_10535 SM00226 Low molecular weight phosphatase family IR04_10590 SM00448 cheY-homologous receiver domain IR04_10610 SM00382 ATPases associated with a variety of cellular activities IR04_10620 SM00493 IR04_10620 IR04_10650 SM00344 helix_turn_helix ASNC type IR04_10675 SM00062 Bacterial periplasmic substrate-binding proteins IR04_10675 SM00267 diguanylate cyclase IR04_10680 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor IR04_10685 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IR04_10700 SM00495 Chitin-binding domain type 3 IR04_10700 SM00636 IR04_10700 IR04_10715 SM00342 helix_turn_helix, arabinose operon control protein IR04_10740 SM00448 cheY-homologous receiver domain IR04_10745 SM00448 cheY-homologous receiver domain IR04_10755 SM00387 Histidine kinase-like ATPases IR04_10755 SM00388 His Kinase A (phosphoacceptor) domain IR04_10760 SM00387 Histidine kinase-like ATPases IR04_10765 SM00052 Putative diguanylate phosphodiesterase IR04_10765 SM00448 cheY-homologous receiver domain IR04_10770 SM00448 cheY-homologous receiver domain IR04_10775 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_10775 SM00387 Histidine kinase-like ATPases IR04_10800 SM00382 ATPases associated with a variety of cellular activities IR04_10805 SM00382 ATPases associated with a variety of cellular activities IR04_10845 SM00382 ATPases associated with a variety of cellular activities IR04_10850 SM00267 diguanylate cyclase IR04_10870 SM00382 ATPases associated with a variety of cellular activities IR04_10885 SM00729 Elongator protein 3, MiaB family, Radical SAM IR04_10885 SM00876 Biotin and Thiamin Synthesis associated domain IR04_10975 SM00528 Domain in histone-like proteins of HNS family IR04_11035 SM00357 Cold shock protein domain IR04_11045 SM00382 ATPases associated with a variety of cellular activities IR04_11045 SM01086 C-terminal, D2-small domain, of ClpB protein IR04_11100 SM00448 cheY-homologous receiver domain IR04_11105 SM00387 Histidine kinase-like ATPases IR04_11200 SM00481 DNA polymerase alpha chain like domain IR04_11210 SM00363 S4 RNA-binding domain IR04_11215 SM00382 ATPases associated with a variety of cellular activities IR04_11220 SM00382 ATPases associated with a variety of cellular activities IR04_11240 SM00267 diguanylate cyclase IR04_11255 SM00919 Malic enzyme, NAD binding domain IR04_11255 SM01274 IR04_11255 IR04_11280 SM00271 DnaJ molecular chaperone homology domain IR04_11280 SM00671 Sel1-like repeats. IR04_11315 SM00020 Trypsin-like serine protease IR04_11345 SM00345 helix_turn_helix gluconate operon transcriptional repressor IR04_11345 SM00866 IR04_11345 IR04_11360 SM00841 Elongation factor P, C-terminal IR04_11360 SM01185 IR04_11360 IR04_11370 SM00052 Putative diguanylate phosphodiesterase IR04_11375 SM00486 DNA polymerase type-B family IR04_11380 SM00421 helix_turn_helix, Lux Regulon IR04_11380 SM00448 cheY-homologous receiver domain IR04_11385 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IR04_11385 SM00465 GIY-YIG type nucleases (URI domain) IR04_11415 SM00267 diguanylate cyclase IR04_11430 SM00873 B3/4 domain IR04_11430 SM00874 tRNA synthetase B5 domain IR04_11430 SM00896 Ferredoxin-fold anticodon binding domain IR04_11435 SM00411 bacterial (prokaryotic) histone like domain IR04_11515 SM00855 Phosphoglycerate mutase family IR04_11530 SM00382 ATPases associated with a variety of cellular activities IR04_11545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_11545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_11545 SM01049 IR04_11545 IR04_11560 SM00852 Probable molybdopterin binding domain IR04_11590 SM00434 DNA Topoisomerase IV IR04_11595 SM00450 Rhodanese Homology Domain IR04_11600 SM00342 helix_turn_helix, arabinose operon control protein IR04_11650 SM00849 Metallo-beta-lactamase superfamily IR04_11680 SM00387 Histidine kinase-like ATPases IR04_11680 SM01049 IR04_11680 IR04_11685 SM00421 helix_turn_helix, Lux Regulon IR04_11685 SM00448 cheY-homologous receiver domain IR04_11690 SM00347 helix_turn_helix multiple antibiotic resistance protein IR04_11700 SM00495 Chitin-binding domain type 3 IR04_11730 SM00354 helix_turn _helix lactose operon repressor IR04_11745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_11745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_11750 SM00479 IR04_11750 IR04_11755 SM00100 Cyclic nucleotide-monophosphate binding domain IR04_11755 SM00116 Domain in cystathionine beta-synthase and other proteins. IR04_11770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_11770 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IR04_11785 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_11785 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_11835 SM00091 PAS domain IR04_11835 SM00382 ATPases associated with a variety of cellular activities IR04_11855 SM01005 Alanine racemase, C-terminal domain IR04_11860 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_11860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_11870 SM00387 Histidine kinase-like ATPases IR04_11875 SM00448 cheY-homologous receiver domain IR04_11890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_11890 SM00387 Histidine kinase-like ATPases IR04_11890 SM00388 His Kinase A (phosphoacceptor) domain IR04_11895 SM00448 cheY-homologous receiver domain IR04_11895 SM00862 Transcriptional regulatory protein, C terminal IR04_11920 SM00382 ATPases associated with a variety of cellular activities IR04_11955 SM00345 helix_turn_helix gluconate operon transcriptional repressor IR04_11955 SM00895 IR04_11955 IR04_12025 SM00448 cheY-homologous receiver domain IR04_12025 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IR04_12030 SM00073 Histidine Phosphotransfer domain IR04_12030 SM00091 PAS domain IR04_12030 SM00387 Histidine kinase-like ATPases IR04_12030 SM00388 His Kinase A (phosphoacceptor) domain IR04_12030 SM00448 cheY-homologous receiver domain IR04_12040 SM00267 diguanylate cyclase IR04_12045 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase IR04_12080 SM00062 Bacterial periplasmic substrate-binding proteins IR04_12105 SM00028 Tetratricopeptide repeats IR04_12105 SM00267 diguanylate cyclase IR04_12120 SM00267 diguanylate cyclase IR04_12130 SM00267 diguanylate cyclase IR04_12150 SM00267 diguanylate cyclase IR04_12150 SM01079 IR04_12150 IR04_12155 SM00479 IR04_12155 IR04_12170 SM00382 ATPases associated with a variety of cellular activities IR04_12170 SM00487 DEAD-like helicases superfamily IR04_12170 SM00490 helicase superfamily c-terminal domain IR04_12170 SM00847 Helicase associated domain (HA2) Add an annotation IR04_12215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_12220 SM00448 cheY-homologous receiver domain IR04_12230 SM00073 Histidine Phosphotransfer domain IR04_12230 SM00260 Two component signalling adaptor domain IR04_12230 SM00387 Histidine kinase-like ATPases IR04_12230 SM01231 IR04_12230 IR04_12235 SM00448 cheY-homologous receiver domain IR04_12240 SM00138 Methyltransferase, chemotaxis proteins IR04_12250 SM00448 cheY-homologous receiver domain IR04_12255 SM00260 Two component signalling adaptor domain IR04_12265 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_12265 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_12270 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) IR04_12270 SM00091 PAS domain IR04_12270 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_12275 SM00487 DEAD-like helicases superfamily IR04_12275 SM00490 helicase superfamily c-terminal domain IR04_12300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_12300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_12380 SM00382 ATPases associated with a variety of cellular activities IR04_12410 SM00100 Cyclic nucleotide-monophosphate binding domain IR04_12410 SM00419 helix_turn_helix, cAMP Regulatory protein IR04_12460 SM00897 FIST N domain IR04_12460 SM01204 IR04_12460 IR04_12465 SM00387 Histidine kinase-like ATPases IR04_12465 SM00388 His Kinase A (phosphoacceptor) domain IR04_12465 SM00448 cheY-homologous receiver domain IR04_12470 SM00382 ATPases associated with a variety of cellular activities IR04_12480 SM00382 ATPases associated with a variety of cellular activities IR04_12515 SM00530 Helix-turn-helix XRE-family like proteins IR04_12565 SM00530 Helix-turn-helix XRE-family like proteins IR04_12580 SM00530 Helix-turn-helix XRE-family like proteins IR04_12610 SM00530 Helix-turn-helix XRE-family like proteins IR04_12670 SM00382 ATPases associated with a variety of cellular activities IR04_12680 SM00981 IR04_12680 IR04_12715 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IR04_12715 SM00245 tail specific protease IR04_12720 SM00945 ProQ/FINO family IR04_12730 SM00382 ATPases associated with a variety of cellular activities IR04_12750 SM00316 Ribosomal protein S1-like RNA-binding domain IR04_12795 SM00926 Molybdopterin oxidoreductase Fe4S4 domain IR04_12830 SM00382 ATPases associated with a variety of cellular activities IR04_12835 SM00387 Histidine kinase-like ATPases IR04_12835 SM00388 His Kinase A (phosphoacceptor) domain IR04_12840 SM00382 ATPases associated with a variety of cellular activities IR04_12840 SM00448 cheY-homologous receiver domain IR04_12855 SM00382 ATPases associated with a variety of cellular activities IR04_12865 SM00852 Probable molybdopterin binding domain IR04_12895 SM01144 IR04_12895 IR04_12905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_12990 SM00382 ATPases associated with a variety of cellular activities IR04_12995 SM00420 helix_turn_helix, Deoxyribose operon repressor IR04_12995 SM01134 IR04_12995 IR04_13015 SM00354 helix_turn _helix lactose operon repressor IR04_13035 SM00849 Metallo-beta-lactamase superfamily IR04_13060 SM00382 ATPases associated with a variety of cellular activities IR04_13095 SM01022 IR04_13095 IR04_13135 SM00248 ankyrin repeats IR04_13165 SM00822 IR04_13165 IR04_13170 SM00052 Putative diguanylate phosphodiesterase IR04_13175 SM00267 diguanylate cyclase IR04_13215 SM00267 diguanylate cyclase IR04_13230 SM00260 Two component signalling adaptor domain IR04_13230 SM00448 cheY-homologous receiver domain IR04_13240 SM00448 cheY-homologous receiver domain IR04_13245 SM00387 Histidine kinase-like ATPases IR04_13285 SM00028 Tetratricopeptide repeats IR04_13285 SM00386 HAT (Half-A-TPR) repeats IR04_13370 SM00382 ATPases associated with a variety of cellular activities IR04_13395 SM00363 S4 RNA-binding domain IR04_13400 SM00487 DEAD-like helicases superfamily IR04_13400 SM00490 helicase superfamily c-terminal domain IR04_13410 SM00448 cheY-homologous receiver domain IR04_13410 SM00862 Transcriptional regulatory protein, C terminal IR04_13415 SM00387 Histidine kinase-like ATPases IR04_13425 SM00052 Putative diguanylate phosphodiesterase IR04_13440 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_13440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_13465 SM00020 Trypsin-like serine protease IR04_13475 SM00448 cheY-homologous receiver domain IR04_13480 SM00052 Putative diguanylate phosphodiesterase IR04_13480 SM00421 helix_turn_helix, Lux Regulon IR04_13480 SM00448 cheY-homologous receiver domain IR04_13485 SM00062 Bacterial periplasmic substrate-binding proteins IR04_13485 SM00073 Histidine Phosphotransfer domain IR04_13485 SM00387 Histidine kinase-like ATPases IR04_13485 SM00388 His Kinase A (phosphoacceptor) domain IR04_13485 SM00448 cheY-homologous receiver domain IR04_13485 SM00918 Ligated ion channel L-glutamate- and glycine-binding site IR04_13490 SM00116 Domain in cystathionine beta-synthase and other proteins. IR04_13515 SM00382 ATPases associated with a variety of cellular activities IR04_13550 SM00382 ATPases associated with a variety of cellular activities IR04_13570 SM00155 Phospholipase D. Active site motifs. IR04_13615 SM00382 ATPases associated with a variety of cellular activities IR04_13635 SM00382 ATPases associated with a variety of cellular activities IR04_13640 SM00382 ATPases associated with a variety of cellular activities IR04_13655 SM01131 IR04_13655 IR04_13765 SM00052 Putative diguanylate phosphodiesterase IR04_13765 SM00091 PAS domain IR04_13770 SM00729 Elongator protein 3, MiaB family, Radical SAM IR04_13780 SM00344 helix_turn_helix ASNC type IR04_13810 SM00448 cheY-homologous receiver domain IR04_13810 SM00862 Transcriptional regulatory protein, C terminal IR04_13820 SM00354 helix_turn _helix lactose operon repressor IR04_13860 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain IR04_13860 SM00437 Bacterial DNA topoisomerase I DNA-binding domain IR04_13860 SM00493 IR04_13860 IR04_13890 SM00316 Ribosomal protein S1-like RNA-binding domain IR04_13990 SM00487 DEAD-like helicases superfamily IR04_13990 SM00490 helicase superfamily c-terminal domain IR04_14010 SM00487 DEAD-like helicases superfamily IR04_14065 SM01130 IR04_14065 IR04_14265 SM00382 ATPases associated with a variety of cellular activities IR04_14300 SM00342 helix_turn_helix, arabinose operon control protein IR04_14320 SM00387 Histidine kinase-like ATPases IR04_14320 SM00388 His Kinase A (phosphoacceptor) domain IR04_14320 SM00448 cheY-homologous receiver domain IR04_14395 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IR04_14405 SM00840 IR04_14405 IR04_14440 SM00491 IR04_14440 IR04_14460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_14460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_14480 SM00062 Bacterial periplasmic substrate-binding proteins IR04_14480 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IR04_14485 SM00382 ATPases associated with a variety of cellular activities IR04_14505 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_14525 SM00763 PrkA AAA domain IR04_14555 SM00382 ATPases associated with a variety of cellular activities IR04_14560 SM00849 Metallo-beta-lactamase superfamily IR04_14575 SM00382 ATPases associated with a variety of cellular activities IR04_14590 SM00487 DEAD-like helicases superfamily IR04_14590 SM00490 helicase superfamily c-terminal domain IR04_14590 SM00982 IR04_14590 IR04_14590 SM01058 CarD-like/TRCF domain IR04_14645 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_14645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_14655 SM00345 helix_turn_helix gluconate operon transcriptional repressor IR04_14670 SM00843 IR04_14670 IR04_14680 SM00344 helix_turn_helix ASNC type IR04_14685 SM01002 Alanine dehydrogenase/PNT, C-terminal domain IR04_14685 SM01003 Alanine dehydrogenase/PNT, N-terminal domain IR04_14715 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family IR04_14720 SM00028 Tetratricopeptide repeats IR04_14730 SM00411 bacterial (prokaryotic) histone like domain IR04_14735 SM00316 Ribosomal protein S1-like RNA-binding domain IR04_14745 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IR04_14755 SM00411 bacterial (prokaryotic) histone like domain IR04_14760 SM00382 ATPases associated with a variety of cellular activities IR04_14760 SM00464 Found in ATP-dependent protease La (LON) IR04_14765 SM00382 ATPases associated with a variety of cellular activities IR04_14765 SM00994 ClpX C4-type zinc finger IR04_14765 SM01086 C-terminal, D2-small domain, of ClpB protein IR04_14785 SM00387 Histidine kinase-like ATPases IR04_14785 SM00388 His Kinase A (phosphoacceptor) domain IR04_14790 SM00382 ATPases associated with a variety of cellular activities IR04_14790 SM00448 cheY-homologous receiver domain IR04_14825 SM00052 Putative diguanylate phosphodiesterase IR04_14825 SM00267 diguanylate cyclase IR04_14840 SM00563 Phosphate acyltransferases IR04_14910 SM00495 Chitin-binding domain type 3 IR04_14910 SM00636 IR04_14910 IR04_14965 SM00978 IR04_14965 IR04_14975 SM00563 Phosphate acyltransferases IR04_14985 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_14985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_14990 SM00530 Helix-turn-helix XRE-family like proteins IR04_15005 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain IR04_15035 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IR04_15040 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IR04_15045 SM01144 IR04_15045 IR04_15060 SM00474 3'-5' exonuclease IR04_15090 SM00487 DEAD-like helicases superfamily IR04_15090 SM00491 IR04_15090 IR04_15115 SM00870 IR04_15115 IR04_15135 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IR04_15165 SM00260 Two component signalling adaptor domain IR04_15165 SM00448 cheY-homologous receiver domain IR04_15235 SM00825 Beta-ketoacyl synthase IR04_15245 SM00822 IR04_15245 IR04_15250 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. IR04_15280 SM00363 S4 RNA-binding domain IR04_15290 SM00316 Ribosomal protein S1-like RNA-binding domain IR04_15315 SM00859 Semialdehyde dehydrogenase, NAD binding domain IR04_15325 SM00073 Histidine Phosphotransfer domain IR04_15360 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain IR04_15360 SM00437 Bacterial DNA topoisomerase I DNA-binding domain IR04_15360 SM00493 IR04_15360 IR04_15430 SM00382 ATPases associated with a variety of cellular activities IR04_15440 SM00260 Two component signalling adaptor domain IR04_15445 SM00260 Two component signalling adaptor domain IR04_15455 SM00448 cheY-homologous receiver domain IR04_15460 SM00073 Histidine Phosphotransfer domain IR04_15460 SM00260 Two component signalling adaptor domain IR04_15460 SM00387 Histidine kinase-like ATPases IR04_15460 SM01231 IR04_15460 IR04_15470 SM00448 cheY-homologous receiver domain IR04_15485 SM00382 ATPases associated with a variety of cellular activities IR04_15485 SM00962 SRP54-type protein, GTPase domain IR04_15495 SM00855 Phosphoglycerate mutase family IR04_15510 SM00836 DALR anticodon binding domain IR04_15510 SM01016 Arginyl tRNA synthetase N terminal dom IR04_15530 SM00899 IR04_15530 IR04_15535 SM00342 helix_turn_helix, arabinose operon control protein IR04_15545 SM00382 ATPases associated with a variety of cellular activities IR04_15555 SM00881 CoA binding domain IR04_15570 SM00861 Transketolase, pyrimidine binding domain IR04_15665 SM00859 Semialdehyde dehydrogenase, NAD binding domain IR04_15675 SM00825 Beta-ketoacyl synthase IR04_15715 SM00463 Small MutS-related domain IR04_15770 SM00382 ATPases associated with a variety of cellular activities IR04_15795 SM00382 ATPases associated with a variety of cellular activities IR04_15795 SM00448 cheY-homologous receiver domain IR04_15800 SM00091 PAS domain IR04_15800 SM00387 Histidine kinase-like ATPases IR04_15800 SM00388 His Kinase A (phosphoacceptor) domain IR04_15805 SM00382 ATPases associated with a variety of cellular activities IR04_15890 SM01130 IR04_15890 IR04_15905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_15905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_15920 SM00028 Tetratricopeptide repeats IR04_15980 SM00937 IR04_15980 IR04_16000 SM01400 IR04_16000 IR04_16115 SM00047 Lysozyme subfamily 2 IR04_16160 SM00138 Methyltransferase, chemotaxis proteins IR04_16165 SM00260 Two component signalling adaptor domain IR04_16165 SM00448 cheY-homologous receiver domain IR04_16170 SM00858 IR04_16170 IR04_16200 SM00823 Phosphopantetheine attachment site IR04_16240 SM01081 Putative carbohydrate binding domain IR04_16260 SM00463 Small MutS-related domain IR04_16265 SM00363 S4 RNA-binding domain IR04_16270 SM00267 diguanylate cyclase IR04_16310 SM00479 IR04_16310 IR04_16325 SM00849 Metallo-beta-lactamase superfamily IR04_16330 SM00257 Lysin motif IR04_16340 SM00938 Nitrogen regulatory protein P-II IR04_16355 SM00977 TilS substrate C-terminal domain IR04_16365 SM00481 DNA polymerase alpha chain like domain IR04_16395 SM00935 Outer membrane protein (OmpH-like) IR04_16405 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IR04_16450 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IR04_16505 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase IR04_16555 SM00267 diguanylate cyclase IR04_16610 SM00900 IR04_16610 IR04_16660 SM00464 Found in ATP-dependent protease La (LON) IR04_16695 SM00925 MltA specific insert domain IR04_16790 SM00354 helix_turn _helix lactose operon repressor IR04_16795 SM01038 Beta galactosidase small chain IR04_16815 SM00838 Elongation factor G C-terminus IR04_16815 SM00889 Elongation factor G, domain IV IR04_16820 SM00382 ATPases associated with a variety of cellular activities IR04_16850 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain IR04_16855 SM01133 IR04_16855 IR04_16890 SM00986 Uracil DNA glycosylase superfamily IR04_16890 SM00987 UreE urease accessory protein, C-terminal domain IR04_16895 SM00518 AP endonuclease family 2 IR04_16935 SM00448 cheY-homologous receiver domain IR04_16935 SM00862 Transcriptional regulatory protein, C terminal IR04_16940 SM00073 Histidine Phosphotransfer domain IR04_16940 SM00091 PAS domain IR04_16940 SM00387 Histidine kinase-like ATPases IR04_16940 SM00388 His Kinase A (phosphoacceptor) domain IR04_16940 SM00448 cheY-homologous receiver domain IR04_16945 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) IR04_16945 SM00091 PAS domain IR04_16945 SM00267 diguanylate cyclase IR04_16950 SM00729 Elongator protein 3, MiaB family, Radical SAM IR04_17015 SM00382 ATPases associated with a variety of cellular activities IR04_17020 SM00507 HNH nucleases IR04_17035 SM00851 MGS-like domain IR04_17035 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IR04_17040 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain IR04_17060 SM00957 SecA DEAD-like domain IR04_17060 SM00958 SecA preprotein cross-linking domain IR04_17075 SM00864 Tubulin/FtsZ family, GTPase domain IR04_17075 SM00865 Tubulin/FtsZ family, C-terminal domain IR04_17080 SM00842 Cell division protein FtsA IR04_17155 SM00345 helix_turn_helix gluconate operon transcriptional repressor IR04_17155 SM00895 IR04_17155 IR04_17185 SM00644 IR04_17185 IR04_17235 SM00434 DNA Topoisomerase IV IR04_17240 SM00387 Histidine kinase-like ATPases IR04_17240 SM00433 TopoisomeraseII IR04_17280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IR04_17280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_17290 SM00880 IR04_17290 IR04_17290 SM01118 IR04_17290 IR04_17305 SM00287 Bacterial SH3 domain homologues IR04_17315 SM00382 ATPases associated with a variety of cellular activities IR04_17325 SM01192 IR04_17325 IR04_17325 SM01193 IR04_17325 IR04_17345 SM00954 Region found in RelA / SpoT proteins IR04_17355 SM00073 Histidine Phosphotransfer domain IR04_17355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_17355 SM00387 Histidine kinase-like ATPases IR04_17355 SM00388 His Kinase A (phosphoacceptor) domain IR04_17355 SM00448 cheY-homologous receiver domain IR04_17360 SM00267 diguanylate cyclase IR04_17395 SM00358 Double-stranded RNA binding motif IR04_17395 SM00535 Ribonuclease III family IR04_17515 SM00014 Acid phosphatase homologues IR04_17525 SM00917 LeuA allosteric (dimerisation) domain IR04_17530 SM01329 IR04_17530 IR04_17585 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IR04_17635 SM00487 DEAD-like helicases superfamily IR04_17635 SM00490 helicase superfamily c-terminal domain IR04_17645 SM00670 Large family of predicted nucleotide-binding domains IR04_17675 SM00563 Phosphate acyltransferases IR04_17710 SM00382 ATPases associated with a variety of cellular activities IR04_17720 SM00116 Domain in cystathionine beta-synthase and other proteins. IR04_17740 SM00382 ATPases associated with a variety of cellular activities IR04_17770 SM00924 MgtE intracellular N domain IR04_17785 SM00382 ATPases associated with a variety of cellular activities IR04_17855 SM00382 ATPases associated with a variety of cellular activities IR04_17905 SM00487 DEAD-like helicases superfamily IR04_17905 SM00490 helicase superfamily c-terminal domain IR04_17940 SM00662 RNA polymerases D IR04_17945 SM00363 S4 RNA-binding domain IR04_17945 SM01390 IR04_17945 IR04_18010 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. IR04_18015 SM01374 IR04_18015 IR04_18035 SM00322 K homology RNA-binding domain IR04_18050 SM01382 IR04_18050 IR04_18050 SM01383 IR04_18050 IR04_18070 SM01403 IR04_18070 IR04_18080 SM00316 Ribosomal protein S1-like RNA-binding domain IR04_18080 SM00357 Cold shock protein domain IR04_18080 SM00955 IR04_18080 IR04_18090 SM00671 Sel1-like repeats. IR04_18095 SM00788 Adenylosuccinate synthetase IR04_18125 SM00382 ATPases associated with a variety of cellular activities IR04_18150 SM00100 Cyclic nucleotide-monophosphate binding domain IR04_18150 SM00419 helix_turn_helix, cAMP Regulatory protein IR04_18155 SM01150 IR04_18155 IR04_18180 SM00729 Elongator protein 3, MiaB family, Radical SAM IR04_18230 SM00965 Secretin and TonB N terminus short domain IR04_18295 SM00859 Semialdehyde dehydrogenase, NAD binding domain IR04_18315 SM00971 Serine acetyltransferase, N-terminal IR04_18330 SM00450 Rhodanese Homology Domain IR04_18360 SM00841 Elongation factor P, C-terminal IR04_18360 SM01185 IR04_18360 IR04_18380 SM00883 Chaperonin 10 Kd subunit IR04_18425 SM00382 ATPases associated with a variety of cellular activities IR04_18425 SM01086 C-terminal, D2-small domain, of ClpB protein IR04_18440 SM00354 helix_turn _helix lactose operon repressor IR04_18445 SM00487 DEAD-like helicases superfamily IR04_18445 SM00490 helicase superfamily c-terminal domain IR04_18455 SM00919 Malic enzyme, NAD binding domain IR04_18455 SM01274 IR04_18455 IR04_18510 SM00448 cheY-homologous receiver domain IR04_18510 SM00862 Transcriptional regulatory protein, C terminal IR04_18515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IR04_18515 SM00387 Histidine kinase-like ATPases IR04_18515 SM00388 His Kinase A (phosphoacceptor) domain IR04_18535 SM00267 diguanylate cyclase IR04_18565 SM00421 helix_turn_helix, Lux Regulon IR04_18565 SM00448 cheY-homologous receiver domain IR04_18570 SM01091 Transporter associated domain IR04_18590 SM00072 Guanylate kinase homologues. IR04_18595 SM01409 IR04_18595 IR04_18600 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IR04_18600 SM00954 Region found in RelA / SpoT proteins IR04_18605 SM00487 DEAD-like helicases superfamily IR04_18605 SM00490 helicase superfamily c-terminal domain IR04_18620 SM00448 cheY-homologous receiver domain IR04_18620 SM00862 Transcriptional regulatory protein, C terminal IR04_18630 SM00316 Ribosomal protein S1-like RNA-binding domain IR04_18630 SM00732 Likely ribonuclease with RNase H fold. IR04_18710 SM00382 ATPases associated with a variety of cellular activities IR04_18725 SM00363 S4 RNA-binding domain IR04_18775 SM01230 IR04_18775 IR04_18790 SM00091 PAS domain IR04_18790 SM00387 Histidine kinase-like ATPases IR04_18790 SM00388 His Kinase A (phosphoacceptor) domain IR04_18795 SM00382 ATPases associated with a variety of cellular activities IR04_18795 SM00448 cheY-homologous receiver domain IR04_18800 SM00052 Putative diguanylate phosphodiesterase IR04_18800 SM00267 diguanylate cyclase IR04_18915 SM00382 ATPases associated with a variety of cellular activities IR04_18955 SM00470 ParB-like nuclease domain IR04_18970 SM01228 IR04_18970