locus-tag class description N900_00005 PF00258 Flavodoxin N900_00010 PF01926 50S ribosome-binding GTPase N900_00010 PF10396 GTP-binding protein TrmE N-terminus N900_00010 PF12631 MnmE helical domain N900_00015 PF14849 YidC periplasmic domain N900_00015 PF02096 60Kd inner membrane protein N900_00020 PF00825 Ribonuclease P N900_00025 PF00468 Ribosomal protein L34 N900_00030 PF00005 ABC transporter N900_00035 PF00528 Binding-protein-dependent transport system inner membrane component N900_00040 PF00497 Bacterial extracellular solute-binding proteins, family 3 N900_00045 PF00308 Bacterial dnaA protein N900_00045 PF11638 DnaA N-terminal domain N900_00045 PF08299 Bacterial dnaA protein helix-turn-helix N900_00050 PF00712 DNA polymerase III beta subunit, N-terminal domain N900_00050 PF02768 DNA polymerase III beta subunit, C-terminal domain N900_00050 PF02767 DNA polymerase III beta subunit, central domain N900_00055 PF02463 RecF/RecN/SMC N terminal domain N900_00060 PF00204 DNA gyrase B N900_00060 PF00986 DNA gyrase B subunit, carboxyl terminus N900_00060 PF18053 DNA gyrase B subunit insert domain N900_00060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_00060 PF01751 Toprim domain N900_00075 PF00011 Hsp20/alpha crystallin family N900_00080 PF00155 Aminotransferase class I and II N900_00085 PF05746 DALR anticodon binding domain N900_00085 PF02092 Glycyl-tRNA synthetase beta subunit N900_00090 PF02091 Glycyl-tRNA synthetase alpha subunit N900_00095 PF01169 Uncharacterized protein family UPF0016 N900_00105 PF01206 Sulfurtransferase TusA N900_00115 PF00107 Zinc-binding dehydrogenase N900_00115 PF08240 Alcohol dehydrogenase GroES-like domain N900_00120 PF00291 Pyridoxal-phosphate dependent enzyme N900_00120 PF00585 C-terminal regulatory domain of Threonine dehydratase N900_00125 PF00920 Dehydratase family N900_00130 PF01063 Amino-transferase class IV N900_00140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N900_00140 PF00205 Thiamine pyrophosphate enzyme, central domain N900_00140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N900_00145 PF13335 Magnesium chelatase, subunit ChlI C-terminal N900_00145 PF01078 Magnesium chelatase, subunit ChlI N900_00150 PF01553 Acyltransferase N900_00155 PF01323 DSBA-like thioredoxin domain N900_00160 PF01636 Phosphotransferase enzyme family N900_00165 PF13746 4Fe-4S dicluster domain N900_00165 PF12801 4Fe-4S binding domain N900_00165 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase N900_00170 PF06288 Protein of unknown function (DUF1040) N900_00180 PF07070 SpoOM protein N900_00185 PF03006 Haemolysin-III related N900_00195 PF02386 Cation transport protein N900_00200 PF02254 TrkA-N domain N900_00200 PF02080 TrkA-C domain N900_00205 PF01029 NusB family N900_00205 PF01189 16S rRNA methyltransferase RsmB/F N900_00210 PF02911 Formyl transferase, C-terminal domain N900_00210 PF00551 Formyl transferase N900_00215 PF01327 Polypeptide deformylase N900_00220 PF01476 LysM domain N900_00225 PF02481 DNA recombination-mediator protein A N900_00225 PF17782 DprA winged helix domain N900_00230 PF04361 Protein of unknown function (DUF494) N900_00235 PF01396 Topoisomerase DNA binding C4 zinc finger N900_00240 PF02222 ATP-grasp domain N900_00240 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain N900_00245 PF00731 AIR carboxylase N900_00250 PF01300 Telomere recombination N900_00255 PF01218 Coproporphyrinogen III oxidase N900_00260 PF18317 Shikimate 5'-dehydrogenase C-terminal domain N900_00260 PF01488 Shikimate / quinate 5-dehydrogenase N900_00260 PF08501 Shikimate dehydrogenase substrate binding domain N900_00270 PF00132 Bacterial transferase hexapeptide (six repeats) N900_00310 PF02537 CrcB-like protein, Camphor Resistance (CrcB) N900_00315 PF13667 ThiC-associated domain N900_00315 PF01964 Radical SAM ThiC family N900_00320 PF02581 Thiamine monophosphate synthase N900_00325 PF00899 ThiF family N900_00330 PF02597 ThiS family N900_00335 PF05690 Thiazole biosynthesis protein ThiG N900_00340 PF06968 Biotin and Thiamin Synthesis associated domain N900_00340 PF04055 Radical SAM superfamily N900_00345 PF00557 Metallopeptidase family M24 N900_00345 PF01321 Creatinase/Prolidase N-terminal domain N900_00345 PF01321 Creatinase/Prolidase N-terminal domain N900_00345 PF00557 Metallopeptidase family M24 N900_00350 PF03466 LysR substrate binding domain N900_00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_00355 PF07690 Major Facilitator Superfamily N900_00365 PF01037 Lrp/AsnC ligand binding domain N900_00370 PF00563 EAL domain N900_00370 PF00990 Diguanylate cyclase, GGDEF domain N900_00370 PF08448 PAS fold N900_00375 PF04445 Putative SAM-dependent methyltransferase N900_00385 PF00892 EamA-like transporter family N900_00390 PF00582 Universal stress protein family N900_00395 PF00210 Ferritin-like domain N900_00400 PF10625 Universal stress protein B (UspB) N900_00415 PF02646 RmuC family N900_00420 PF01209 ubiE/COQ5 methyltransferase family N900_00425 PF02036 SCP-2 sterol transfer family N900_00430 PF03109 ABC1 family N900_00435 PF02416 mttA/Hcf106 family N900_00440 PF02416 mttA/Hcf106 family N900_00445 PF00902 Sec-independent protein translocase protein (TatC) N900_00450 PF03150 Di-haem cytochrome c peroxidase N900_00450 PF00034 Cytochrome c N900_00455 PF01554 MatE N900_00465 PF01726 LexA DNA binding domain N900_00465 PF00717 Peptidase S24-like N900_00470 PF01553 Acyltransferase N900_00475 PF01040 UbiA prenyltransferase family N900_00480 PF04345 Chorismate lyase N900_00485 PF03748 Flagellar basal body-associated protein FliL N900_00490 PF02203 Tar ligand binding domain homologue N900_00490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_00490 PF00672 HAMP domain N900_00500 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease N900_00500 PF01694 Rhomboid family N900_00505 PF00581 Rhodanese-like domain N900_00510 PF01026 TatD related DNase N900_00515 PF00490 Delta-aminolevulinic acid dehydratase N900_00525 PF01612 3'-5' exonuclease N900_00525 PF00476 DNA polymerase family A N900_00525 PF01367 5'-3' exonuclease, C-terminal SAM fold N900_00525 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain N900_00530 PF01926 50S ribosome-binding GTPase N900_00535 PF00034 Cytochrome c N900_00545 PF04220 Der GTPase activator (YihI) N900_00550 PF10675 Protein of unknown function (DUF2489) N900_00555 PF04055 Radical SAM superfamily N900_00555 PF06969 HemN C-terminal domain N900_00560 PF07219 HemY protein N-terminus N900_00565 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase N900_00570 PF02602 Uroporphyrinogen-III synthase HemD N900_00575 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain N900_00575 PF03900 Porphobilinogen deaminase, C-terminal domain N900_00585 PF12633 Adenylate cyclase NT domain N900_00585 PF01295 Adenylate cyclase, class-I N900_00590 PF01491 Frataxin-like domain N900_00600 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain N900_00600 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain N900_00605 PF01678 Diaminopimelate epimerase N900_00610 PF04340 Protein of unknown function, DUF484 N900_00615 PF00589 Phage integrase family N900_00615 PF02899 Phage integrase, N-terminal SAM-like domain N900_00620 PF13419 Haloacid dehalogenase-like hydrolase N900_00625 PF00563 EAL domain N900_00625 PF00990 Diguanylate cyclase, GGDEF domain N900_00625 PF10442 FIST C domain N900_00625 PF08495 FIST N domain N900_00645 PF12146 Serine aminopeptidase, S33 N900_00650 PF01810 LysE type translocator N900_00655 PF08668 HDOD domain N900_00655 PF00563 EAL domain N900_00660 PF00210 Ferritin-like domain N900_00700 PF02881 SRP54-type protein, helical bundle domain N900_00700 PF00448 SRP54-type protein, GTPase domain N900_00705 PF00005 ABC transporter N900_00710 PF18075 FtsX extracellular domain N900_00715 PF04545 Sigma-70, region 4 N900_00715 PF04542 Sigma-70 region 2 N900_00715 PF00140 Sigma-70 factor, region 1.2 N900_00720 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N900_00720 PF07992 Pyridine nucleotide-disulphide oxidoreductase N900_00725 PF00440 Bacterial regulatory proteins, tetR family N900_00735 PF05958 tRNA (Uracil-5-)-methyltransferase N900_00740 PF00593 TonB dependent receptor N900_00740 PF07715 TonB-dependent Receptor Plug Domain N900_00745 PF04151 Bacterial pre-peptidase C-terminal domain N900_00745 PF05922 Peptidase inhibitor I9 N900_00745 PF00082 Subtilase family N900_00750 PF01177 Asp/Glu/Hydantoin racemase N900_00785 PF00962 Adenosine/AMP deaminase N900_00790 PF00990 Diguanylate cyclase, GGDEF domain N900_00790 PF00563 EAL domain N900_00790 PF13188 PAS domain N900_00790 PF03707 Bacterial signalling protein N terminal repeat N900_00795 PF02954 Bacterial regulatory protein, Fis family N900_00795 PF00072 Response regulator receiver domain N900_00795 PF00158 Sigma-54 interaction domain N900_00800 PF00989 PAS fold N900_00800 PF00512 His Kinase A (phospho-acceptor) domain N900_00800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_00815 PF00120 Glutamine synthetase, catalytic domain N900_00815 PF03951 Glutamine synthetase, beta-Grasp domain N900_00835 PF03631 Virulence factor BrkB N900_00840 PF02580 D-Tyr-tRNA(Tyr) deacylase N900_00845 PF09500 Putative thioesterase (yiiD_Cterm) N900_00845 PF00583 Acetyltransferase (GNAT) family N900_00855 PF01293 Phosphoenolpyruvate carboxykinase N900_00860 PF01430 Hsp33 protein N900_00865 PF01479 S4 domain N900_00870 PF11356 Type II secretion system protein C N900_00875 PF03958 Bacterial type II/III secretion system short domain N900_00875 PF00263 Bacterial type II and III secretion system protein N900_00880 PF00437 Type II/IV secretion system protein N900_00885 PF00482 Type II secretion system (T2SS), protein F N900_00890 PF08334 Type II secretion system (T2SS), protein G N900_00890 PF07963 Prokaryotic N-terminal methylation motif N900_00895 PF12019 Type II transport protein GspH N900_00900 PF07963 Prokaryotic N-terminal methylation motif N900_00900 PF02501 Type II secretion system (T2SS), protein I N900_00905 PF07963 Prokaryotic N-terminal methylation motif N900_00905 PF11612 Type II secretion system (T2SS), protein J N900_00910 PF03934 Type II secretion system (T2SS), protein K N900_00915 PF05134 Type II secretion system (T2SS), protein L N900_00915 PF12693 GspL periplasmic domain N900_00920 PF04612 Type II secretion system (T2SS), protein M N900_00925 PF01203 Type II secretion system (T2SS), protein N N900_00930 PF00459 Inositol monophosphatase family N900_00935 PF00293 NUDIX domain N900_00940 PF01106 NifU-like domain N900_00940 PF01521 Iron-sulphur cluster biosynthesis N900_00945 PF00156 Phosphoribosyl transferase domain N900_00950 PF00561 alpha/beta hydrolase fold N900_00960 PF09371 Tex-like protein N-terminal domain N900_00960 PF16921 Tex protein YqgF-like domain N900_00960 PF17674 HHH domain N900_00960 PF00575 S1 RNA binding domain N900_00965 PF03449 Transcription elongation factor, N-terminal N900_00965 PF01272 Transcription elongation factor, GreA/GreB, C-term N900_00970 PF00072 Response regulator receiver domain N900_00970 PF00486 Transcriptional regulatory protein, C terminal N900_00975 PF00672 HAMP domain N900_00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_00975 PF00512 His Kinase A (phospho-acceptor) domain N900_00980 PF00860 Permease family N900_00985 PF00271 Helicase conserved C-terminal domain N900_00985 PF00270 DEAD/DEAH box helicase N900_00985 PF17191 RecG wedge domain N900_00990 PF13291 ACT domain N900_00990 PF04607 Region found in RelA / SpoT proteins N900_00990 PF02824 TGS domain N900_00995 PF01192 RNA polymerase Rpb6 N900_01000 PF00625 Guanylate kinase N900_01005 PF02592 Putative vitamin uptake transporter N900_01010 PF00474 Sodium:solute symporter family N900_01020 PF03471 Transporter associated domain N900_01020 PF00999 Sodium/hydrogen exchanger family N900_01020 PF02080 TrkA-C domain N900_01025 PF00072 Response regulator receiver domain N900_01025 PF00196 Bacterial regulatory proteins, luxR family N900_01030 PF02683 Cytochrome C biogenesis protein transmembrane region N900_01030 PF11412 Disulphide bond corrector protein DsbC N900_01040 PF03605 Anaerobic c4-dicarboxylate membrane transporter N900_01045 PF10415 Fumarase C C-terminus N900_01045 PF00206 Lyase N900_01050 PF00990 Diguanylate cyclase, GGDEF domain N900_01050 PF17158 Membrane-associated sensor, integral membrane domain N900_01055 PF04186 FxsA cytoplasmic membrane protein N900_01060 PF00588 SpoU rRNA Methylase family N900_01065 PF02777 Iron/manganese superoxide dismutases, C-terminal domain N900_01065 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain N900_01070 PF16527 Two-component sensor protein CpxA, periplasmic domain N900_01070 PF00672 HAMP domain N900_01070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_01070 PF00512 His Kinase A (phospho-acceptor) domain N900_01075 PF00486 Transcriptional regulatory protein, C terminal N900_01075 PF00072 Response regulator receiver domain N900_01085 PF01545 Cation efflux family N900_01085 PF16916 Dimerisation domain of Zinc Transporter N900_01090 PF00365 Phosphofructokinase N900_01095 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded N900_01100 PF06005 Cell division protein ZapB N900_01105 PF02219 Methylenetetrahydrofolate reductase N900_01115 PF03447 Homoserine dehydrogenase, NAD binding domain N900_01115 PF00742 Homoserine dehydrogenase N900_01115 PF00696 Amino acid kinase family N900_01120 PF01053 Cys/Met metabolism PLP-dependent enzyme N900_01125 PF01340 Met Apo-repressor, MetJ N900_01130 PF00390 Malic enzyme, N-terminal domain N900_01130 PF03949 Malic enzyme, NAD binding domain N900_01135 PF01197 Ribosomal protein L31 N900_01140 PF00270 DEAD/DEAH box helicase N900_01140 PF00271 Helicase conserved C-terminal domain N900_01140 PF18319 PriA DNA helicase Cys-rich region (CRR) domain N900_01140 PF17764 3′ DNA-binding domain (3′BD) N900_01140 PF18074 Primosomal protein N C-terminal domain N900_01145 PF00356 Bacterial regulatory proteins, lacI family N900_01150 PF05036 Sporulation related domain N900_01155 PF00227 Proteasome subunit N900_01160 PF00004 ATPase family associated with various cellular activities (AAA) N900_01160 PF07724 AAA domain (Cdc48 subfamily) N900_01160 PF10431 C-terminal, D2-small domain, of ClpB protein N900_01165 PF01040 UbiA prenyltransferase family N900_01170 PF03737 Aldolase/RraA N900_01180 PF00121 Triosephosphate isomerase N900_01200 PF00455 DeoR C terminal sensor domain N900_01200 PF08220 DeoR-like helix-turn-helix domain N900_01205 PF00166 Chaperonin 10 Kd subunit N900_01210 PF00118 TCP-1/cpn60 chaperonin family N900_01220 PF04055 Radical SAM superfamily N900_01225 PF01132 Elongation factor P (EF-P) OB domain N900_01225 PF08207 Elongation factor P (EF-P) KOW-like domain N900_01225 PF09285 Elongation factor P, C-terminal N900_01230 PF02313 Fumarate reductase subunit D N900_01235 PF02300 Fumarate reductase subunit C N900_01240 PF13085 2Fe-2S iron-sulfur cluster binding domain N900_01240 PF13183 4Fe-4S dicluster domain N900_01245 PF02910 Fumarate reductase flavoprotein C-term N900_01245 PF00890 FAD binding domain N900_01250 PF00152 tRNA synthetases class II (D, K and N) N900_01255 PF00581 Rhodanese-like domain N900_01260 PF02556 Preprotein translocase subunit SecB N900_01265 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus N900_01265 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus N900_01270 PF00132 Bacterial transferase hexapeptide (six repeats) N900_01270 PF06426 Serine acetyltransferase, N-terminal N900_01280 PF00311 Phosphoenolpyruvate carboxylase N900_01285 PF07687 Peptidase dimerisation domain N900_01285 PF01546 Peptidase family M20/M25/M40 N900_01290 PF02774 Semialdehyde dehydrogenase, dimerisation domain N900_01290 PF01118 Semialdehyde dehydrogenase, NAD binding domain N900_01295 PF00696 Amino acid kinase family N900_01300 PF00764 Arginosuccinate synthase N900_01305 PF14698 Argininosuccinate lyase C-terminal N900_01305 PF00206 Lyase N900_01315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N900_01315 PF07992 Pyridine nucleotide-disulphide oxidoreductase N900_01320 PF00462 Glutaredoxin N900_01320 PF08534 Redoxin N900_01325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_01325 PF03466 LysR substrate binding domain N900_01330 PF00912 Transglycosylase N900_01330 PF17092 Penicillin-binding protein OB-like domain N900_01330 PF00905 Penicillin binding protein transpeptidase domain N900_01355 PF00263 Bacterial type II and III secretion system protein N900_01355 PF03958 Bacterial type II/III secretion system short domain N900_01355 PF07660 Secretin and TonB N terminus short domain N900_01355 PF11741 AMIN domain N900_01360 PF01202 Shikimate kinase N900_01365 PF01761 3-dehydroquinate synthase N900_01375 PF02086 D12 class N6 adenine-specific DNA methyltransferase N900_01380 PF00834 Ribulose-phosphate 3 epimerase family N900_01385 PF13419 Haloacid dehalogenase-like hydrolase N900_01390 PF00579 tRNA synthetases class I (W and Y) N900_01405 PF00919 Uncharacterized protein family UPF0004 N900_01405 PF18693 TRAM domain N900_01405 PF04055 Radical SAM superfamily N900_01410 PF00117 Glutamine amidotransferase class-I N900_01415 PF00202 Aminotransferase class-III N900_01420 PF04958 Arginine N-succinyltransferase beta subunit N900_01425 PF00171 Aldehyde dehydrogenase family N900_01435 PF00027 Cyclic nucleotide-binding domain N900_01435 PF13545 Crp-like helix-turn-helix domain N900_01440 PF00485 Phosphoribulokinase / Uridine kinase family N900_01445 PF06794 Uncharacterised protein family (UPF0270) N900_01450 PF00561 alpha/beta hydrolase fold N900_01460 PF00005 ABC transporter N900_01460 PF12848 ABC transporter N900_01465 PF02525 Flavodoxin-like fold N900_01470 PF02254 TrkA-N domain N900_01470 PF00999 Sodium/hydrogen exchanger family N900_01480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N900_01485 PF01112 Asparaginase N900_01490 PF00709 Adenylosuccinate synthetase N900_01495 PF08238 Sel1 repeat N900_01500 PF00884 Sulfatase N900_01500 PF11893 Domain of unknown function (DUF3413) N900_01505 PF00773 RNB domain N900_01505 PF08206 Ribonuclease B OB domain N900_01505 PF00575 S1 RNA binding domain N900_01505 PF17876 Cold shock domain N900_01505 PF08461 Ribonuclease R winged-helix domain N900_01510 PF00588 SpoU rRNA Methylase family N900_01510 PF08032 RNA 2'-O ribose methyltransferase substrate binding N900_01515 PF00338 Ribosomal protein S10p/S20e N900_01520 PF00297 Ribosomal protein L3 N900_01525 PF00573 Ribosomal protein L4/L1 family N900_01530 PF00276 Ribosomal protein L23 N900_01535 PF03947 Ribosomal Proteins L2, C-terminal domain N900_01535 PF00181 Ribosomal Proteins L2, RNA binding domain N900_01540 PF00203 Ribosomal protein S19 N900_01545 PF00237 Ribosomal protein L22p/L17e N900_01550 PF00189 Ribosomal protein S3, C-terminal domain N900_01550 PF07650 KH domain N900_01555 PF00252 Ribosomal protein L16p/L10e N900_01560 PF00831 Ribosomal L29 protein N900_01565 PF00366 Ribosomal protein S17 N900_01570 PF00238 Ribosomal protein L14p/L23e N900_01575 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 N900_01575 PF00467 KOW motif N900_01580 PF00281 Ribosomal protein L5 N900_01580 PF00673 ribosomal L5P family C-terminus N900_01585 PF00253 Ribosomal protein S14p/S29e N900_01590 PF00410 Ribosomal protein S8 N900_01595 PF00347 Ribosomal protein L6 N900_01600 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast N900_01605 PF00333 Ribosomal protein S5, N-terminal domain N900_01605 PF03719 Ribosomal protein S5, C-terminal domain N900_01610 PF00327 Ribosomal protein L30p/L7e N900_01615 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A N900_01620 PF00344 SecY translocase N900_01625 PF00444 Ribosomal protein L36 N900_01630 PF00416 Ribosomal protein S13/S18 N900_01635 PF00411 Ribosomal protein S11 N900_01640 PF00163 Ribosomal protein S4/S9 N-terminal domain N900_01640 PF01479 S4 domain N900_01645 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain N900_01645 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain N900_01645 PF01000 RNA polymerase Rpb3/RpoA insert domain N900_01650 PF01196 Ribosomal protein L17 N900_01660 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase N900_01660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N900_01665 PF08525 Opacity-associated protein A N-terminal motif N900_01665 PF04225 Opacity-associated protein A LysM-like domain N900_01670 PF00892 EamA-like transporter family N900_01675 PF13673 Acetyltransferase (GNAT) domain N900_01680 PF03880 DbpA RNA binding domain N900_01680 PF00270 DEAD/DEAH box helicase N900_01680 PF00271 Helicase conserved C-terminal domain N900_01690 PF00149 Calcineurin-like phosphoesterase N900_01690 PF02872 5'-nucleotidase, C-terminal domain N900_01695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N900_01695 PF14824 Sirohaem biosynthesis protein central N900_01695 PF10414 Sirohaem synthase dimerisation region N900_01700 PF01507 Phosphoadenosine phosphosulfate reductase family N900_01705 PF00009 Elongation factor Tu GTP binding domain N900_01730 PF00005 ABC transporter N900_01740 PF10795 Protein of unknown function (DUF2607) N900_01745 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) N900_01750 PF01625 Peptide methionine sulfoxide reductase N900_01755 PF01103 Surface antigen N900_01755 PF17243 POTRA domain TamA domain 1 N900_01755 PF07244 Surface antigen variable number repeat N900_01760 PF04357 TamB, inner membrane protein subunit of TAM complex N900_01765 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like N900_01770 PF00719 Inorganic pyrophosphatase N900_01775 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain N900_01780 PF08245 Mur ligase middle domain N900_01780 PF01225 Mur ligase family, catalytic domain N900_01780 PF02875 Mur ligase family, glutamate ligase domain N900_01785 PF02441 Flavoprotein N900_01795 PF00528 Binding-protein-dependent transport system inner membrane component N900_01800 PF00005 ABC transporter N900_01805 PF04751 Protein of unknown function (DUF615) N900_01810 PF01523 Putative modulator of DNA gyrase N900_01815 PF01769 Divalent cation transporter N900_01815 PF00571 CBS domain N900_01815 PF03448 MgtE intracellular N domain N900_01820 PF00381 PTS HPr component phosphorylation site N900_01825 PF03668 P-loop ATPase protein family N900_01830 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N900_01835 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein N900_01840 PF04552 Sigma-54, DNA binding domain N900_01840 PF04963 Sigma-54 factor, core binding domain N900_01840 PF00309 Sigma-54 factor, Activator interacting domain (AID) N900_01845 PF00005 ABC transporter N900_01845 PF12399 Branched-chain amino acid ATP-binding cassette transporter N900_01850 PF03968 OstA-like protein N900_01865 PF01380 SIS domain N900_01865 PF00571 CBS domain N900_01870 PF01699 Sodium/calcium exchanger protein N900_01875 PF00005 ABC transporter N900_01880 PF02405 Permease MlaE N900_01885 PF02470 MlaD protein N900_01890 PF05494 MlaC protein N900_01900 PF01722 BolA-like protein N900_01905 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) N900_01910 PF01553 Acyltransferase N900_01915 PF01042 Endoribonuclease L-PSP N900_01920 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain N900_01920 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain N900_01925 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain N900_01925 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain N900_01935 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain N900_01935 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain N900_01940 PF02562 PhoH-like protein N900_01940 PF13638 PIN domain N900_01950 PF18337 RapA N-terminal Tudor like domain N900_01950 PF00271 Helicase conserved C-terminal domain N900_01950 PF12137 RNA polymerase recycling family C-terminal N900_01950 PF00176 SNF2 family N-terminal domain N900_01950 PF18339 RapA N-terminal Tudor like domain 1 N900_01955 PF00849 RNA pseudouridylate synthase N900_01960 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N900_01960 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N900_01965 PF00133 tRNA synthetases class I (I, L, M and V) N900_01965 PF10458 Valyl tRNA synthetase tRNA binding arm N900_01965 PF08264 Anticodon-binding domain of tRNA N900_01970 PF04364 DNA polymerase III chi subunit, HolC N900_01975 PF00883 Cytosol aminopeptidase family, catalytic domain N900_01975 PF02789 Cytosol aminopeptidase family, N-terminal domain N900_01980 PF03739 Lipopolysaccharide export system permease LptF/LptG N900_01985 PF03739 Lipopolysaccharide export system permease LptF/LptG N900_02000 PF00072 Response regulator receiver domain N900_02045 PF00694 Aconitase C-terminal domain N900_02050 PF00330 Aconitase family (aconitate hydratase) N900_02055 PF00180 Isocitrate/isopropylmalate dehydrogenase N900_02060 PF00682 HMGL-like N900_02060 PF08502 LeuA allosteric (dimerisation) domain N900_02070 PF01569 PAP2 superfamily N900_02080 PF03466 LysR substrate binding domain N900_02080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_02085 PF00501 AMP-binding enzyme N900_02090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N900_02090 PF00205 Thiamine pyrophosphate enzyme, central domain N900_02090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N900_02095 PF10369 Small subunit of acetolactate synthase N900_02100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N900_02100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N900_02100 PF01842 ACT domain N900_02105 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) N900_02110 PF01812 5-formyltetrahydrofolate cyclo-ligase family N900_02115 PF05164 Cell division protein ZapA N900_02120 PF03695 Uncharacterised protein family (UPF0149) N900_02125 PF01494 FAD binding domain N900_02130 PF01494 FAD binding domain N900_02145 PF03937 Flavinator of succinate dehydrogenase N900_02155 PF02910 Fumarate reductase flavoprotein C-term N900_02155 PF00890 FAD binding domain N900_02160 PF04542 Sigma-70 region 2 N900_02160 PF08281 Sigma-70, region 4 N900_02165 PF03873 Anti sigma-E protein RseA, C-terminal domain N900_02165 PF03872 Anti sigma-E protein RseA, N-terminal domain N900_02170 PF03888 MucB/RseB N-terminal domain N900_02170 PF17188 MucB/RseB C-terminal domain N900_02180 PF00679 Elongation factor G C-terminus N900_02180 PF00009 Elongation factor Tu GTP binding domain N900_02180 PF03144 Elongation factor Tu domain 2 N900_02180 PF06421 GTP-binding protein LepA C-terminus N900_02185 PF10502 Signal peptidase, peptidase S26 N900_02190 PF00035 Double-stranded RNA binding motif N900_02190 PF14622 Ribonuclease-III-like N900_02195 PF01926 50S ribosome-binding GTPase N900_02195 PF07650 KH domain N900_02200 PF02565 Recombination protein O C terminal N900_02200 PF11967 Recombination protein O N terminal N900_02205 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ N900_02210 PF01648 4'-phosphopantetheinyl transferase superfamily N900_02225 PF00990 Diguanylate cyclase, GGDEF domain N900_02225 PF00563 EAL domain N900_02230 PF00672 HAMP domain N900_02230 PF00072 Response regulator receiver domain N900_02230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_02230 PF00512 His Kinase A (phospho-acceptor) domain N900_02230 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) N900_02230 PF01627 Hpt domain N900_02235 PF01938 TRAM domain N900_02235 PF05958 tRNA (Uracil-5-)-methyltransferase N900_02240 PF02824 TGS domain N900_02240 PF13291 ACT domain N900_02240 PF04607 Region found in RelA / SpoT proteins N900_02245 PF03819 MazG nucleotide pyrophosphohydrolase domain N900_02250 PF00117 Glutamine amidotransferase class-I N900_02250 PF06418 CTP synthase N-terminus N900_02255 PF03952 Enolase, N-terminal domain N900_02255 PF00113 Enolase, C-terminal TIM barrel domain N900_02260 PF01966 HD domain N900_02260 PF01743 Poly A polymerase head domain N900_02260 PF12627 Probable RNA and SrmB- binding site of polymerase A N900_02265 PF13401 AAA domain N900_02265 PF01471 Putative peptidoglycan binding domain N900_02275 PF08239 Bacterial SH3 domain N900_02280 PF01384 Phosphate transporter family N900_02285 PF01865 Protein of unknown function DUF47 N900_02290 PF01928 CYTH domain N900_02300 PF02743 Cache domain N900_02300 PF00672 HAMP domain N900_02300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_02305 PF08335 GlnD PII-uridylyltransferase N900_02305 PF03710 Glutamate-ammonia ligase adenylyltransferase N900_02310 PF00294 pfkB family carbohydrate kinase N900_02310 PF01467 Cytidylyltransferase-like N900_02315 PF02321 Outer membrane efflux protein N900_02320 PF00293 NUDIX domain N900_02325 PF06853 Protein of unknown function (DUF1249) N900_02330 PF00149 Calcineurin-like phosphoesterase N900_02335 PF05728 Uncharacterised protein family (UPF0227) N900_02340 PF01751 Toprim domain N900_02340 PF00204 DNA gyrase B N900_02340 PF00986 DNA gyrase B subunit, carboxyl terminus N900_02340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_02345 PF00521 DNA gyrase/topoisomerase IV, subunit A N900_02345 PF03989 DNA gyrase C-terminal domain, beta-propeller N900_02350 PF03884 DNA gyrase inhibitor YacG N900_02360 PF07072 Cell division protein N900_02365 PF01121 Dephospho-CoA kinase N900_02370 PF01478 Type IV leader peptidase family N900_02370 PF06750 Bacterial Peptidase A24 N-terminal domain N900_02375 PF00482 Type II secretion system (T2SS), protein F N900_02380 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain N900_02380 PF00437 Type II/IV secretion system protein N900_02385 PF00114 Pilin (bacterial filament) N900_02385 PF07963 Prokaryotic N-terminal methylation motif N900_02390 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain N900_02390 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain N900_02395 PF01510 N-acetylmuramoyl-L-alanine amidase N900_02400 PF00258 Flavodoxin N900_02405 PF02899 Phage integrase, N-terminal SAM-like domain N900_02405 PF00589 Phage integrase family N900_02410 PF10411 Disulfide bond isomerase protein N-terminus N900_02410 PF13098 Thioredoxin-like domain N900_02415 PF02272 DHHA1 domain N900_02415 PF17768 RecJ OB domain N900_02415 PF01368 DHH family N900_02420 PF02872 5'-nucleotidase, C-terminal domain N900_02420 PF00149 Calcineurin-like phosphoesterase N900_02425 PF07729 FCD domain N900_02425 PF00392 Bacterial regulatory proteins, gntR family N900_02430 PF17831 Pyruvate dehydrogenase E1 component middle domain N900_02430 PF00456 Transketolase, thiamine diphosphate binding domain N900_02435 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N900_02435 PF00364 Biotin-requiring enzyme N900_02435 PF02817 e3 binding domain N900_02440 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N900_02440 PF07992 Pyridine nucleotide-disulphide oxidoreductase N900_02450 PF01795 MraW methylase family N900_02455 PF04999 Cell division protein FtsL N900_02460 PF03717 Penicillin-binding Protein dimerisation domain N900_02460 PF00905 Penicillin binding protein transpeptidase domain N900_02465 PF01225 Mur ligase family, catalytic domain N900_02465 PF02875 Mur ligase family, glutamate ligase domain N900_02465 PF08245 Mur ligase middle domain N900_02470 PF01225 Mur ligase family, catalytic domain N900_02470 PF08245 Mur ligase middle domain N900_02470 PF02875 Mur ligase family, glutamate ligase domain N900_02475 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 N900_02475 PF00953 Glycosyl transferase family 4 N900_02480 PF02875 Mur ligase family, glutamate ligase domain N900_02480 PF08245 Mur ligase middle domain N900_02485 PF01098 Cell cycle protein N900_02490 PF03033 Glycosyltransferase family 28 N-terminal domain N900_02490 PF04101 Glycosyltransferase family 28 C-terminal domain N900_02495 PF01225 Mur ligase family, catalytic domain N900_02495 PF08245 Mur ligase middle domain N900_02495 PF02875 Mur ligase family, glutamate ligase domain N900_02500 PF03799 Cell division protein FtsQ N900_02500 PF08478 POTRA domain, FtsQ-type N900_02505 PF02491 SHS2 domain inserted in FTSA N900_02510 PF12327 FtsZ family, C-terminal domain N900_02510 PF00091 Tubulin/FtsZ family, GTPase domain N900_02515 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase N900_02525 PF07516 SecA Wing and Scaffold domain N900_02525 PF07517 SecA DEAD-like domain N900_02525 PF02810 SEC-C motif N900_02525 PF01043 SecA preprotein cross-linking domain N900_02530 PF00293 NUDIX domain N900_02535 PF05173 Dihydrodipicolinate reductase, C-terminus N900_02535 PF01113 Dihydrodipicolinate reductase, N-terminus N900_02545 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain N900_02545 PF00117 Glutamine amidotransferase class-I N900_02550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N900_02550 PF02142 MGS-like domain N900_02550 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain N900_02570 PF00005 ABC transporter N900_02575 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) N900_02580 PF01925 Sulfite exporter TauE/SafE N900_02585 PF03466 LysR substrate binding domain N900_02585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_02590 PF03458 UPF0126 domain N900_02595 PF01497 Periplasmic binding protein N900_02605 PF01048 Phosphorylase superfamily N900_02615 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster N900_02615 PF07992 Pyridine nucleotide-disulphide oxidoreductase N900_02620 PF04898 Glutamate synthase central domain N900_02620 PF01493 GXGXG motif N900_02620 PF00310 Glutamine amidotransferases class-II N900_02620 PF01645 Conserved region in glutamate synthase N900_02625 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster N900_02625 PF07992 Pyridine nucleotide-disulphide oxidoreductase N900_02630 PF01645 Conserved region in glutamate synthase N900_02630 PF00310 Glutamine amidotransferases class-II N900_02630 PF01493 GXGXG motif N900_02630 PF04898 Glutamate synthase central domain N900_02635 PF04055 Radical SAM superfamily N900_02635 PF16199 Radical_SAM C-terminal domain N900_02640 PF01590 GAF domain N900_02640 PF00990 Diguanylate cyclase, GGDEF domain N900_02640 PF00360 Phytochrome region N900_02640 PF00563 EAL domain N900_02645 PF00512 His Kinase A (phospho-acceptor) domain N900_02645 PF00072 Response regulator receiver domain N900_02645 PF00989 PAS fold N900_02645 PF18415 Histidine kinase receptor ArcB trans-membrane domain N900_02645 PF01627 Hpt domain N900_02645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_02650 PF00486 Transcriptional regulatory protein, C terminal N900_02650 PF00072 Response regulator receiver domain N900_02660 PF03737 Aldolase/RraA N900_02670 PF00742 Homoserine dehydrogenase N900_02670 PF13840 ACT domain N900_02670 PF00696 Amino acid kinase family N900_02670 PF01842 ACT domain N900_02670 PF03447 Homoserine dehydrogenase, NAD binding domain N900_02675 PF00288 GHMP kinases N terminal domain N900_02675 PF08544 GHMP kinases C terminal N900_02680 PF00291 Pyridoxal-phosphate dependent enzyme N900_02680 PF14821 Threonine synthase N terminus N900_02685 PF01228 Glycine radical N900_02690 PF01261 Xylose isomerase-like TIM barrel N900_02695 PF03167 Uracil DNA glycosylase superfamily N900_02710 PF01235 Sodium:alanine symporter family N900_02715 PF03883 Peroxide stress protein YaaA N900_02720 PF01026 TatD related DNase N900_02725 PF07670 Nucleoside recognition N900_02725 PF01773 Na+ dependent nucleoside transporter N-terminus N900_02725 PF07662 Na+ dependent nucleoside transporter C-terminus N900_02730 PF01791 DeoC/LacD family aldolase N900_02735 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain N900_02735 PF00591 Glycosyl transferase family, a/b domain N900_02735 PF02885 Glycosyl transferase family, helical bundle domain N900_02740 PF01676 Metalloenzyme superfamily N900_02745 PF01048 Phosphorylase superfamily N900_02755 PF18429 Domain of unknown function (DUF5609) N900_02765 PF18073 Rubredoxin metal binding domain N900_02770 PF03144 Elongation factor Tu domain 2 N900_02770 PF00679 Elongation factor G C-terminus N900_02770 PF14492 Elongation Factor G, domain II N900_02770 PF03764 Elongation factor G, domain IV N900_02770 PF00009 Elongation factor Tu GTP binding domain N900_02775 PF00501 AMP-binding enzyme N900_02780 PF00072 Response regulator receiver domain N900_02790 PF00703 Glycosyl hydrolases family 2 N900_02790 PF02837 Glycosyl hydrolases family 2, sugar binding domain N900_02790 PF16353 Domain of unknown function(DUF4981) N900_02790 PF02929 Beta galactosidase small chain N900_02790 PF02836 Glycosyl hydrolases family 2, TIM barrel domain N900_02795 PF00356 Bacterial regulatory proteins, lacI family N900_02800 PF01588 Putative tRNA binding domain N900_02810 PF01544 CorA-like Mg2+ transporter protein N900_02815 PF18030 RimK PreATP-grasp domain N900_02815 PF08443 RimK-like ATP-grasp domain N900_02815 PF02080 TrkA-C domain N900_02825 PF00583 Acetyltransferase (GNAT) family N900_02835 PF14602 Hexapeptide repeat of succinyl-transferase N900_02835 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle N900_02840 PF07130 YebG protein N900_02855 PF17946 RecC C-terminal domain N900_02860 PF13361 UvrD-like helicase C-terminal domain N900_02860 PF00580 UvrD/REP helicase N-terminal domain N900_02860 PF12705 PD-(D/E)XK nuclease superfamily N900_02865 PF13538 UvrD-like helicase C-terminal domain N900_02880 PF00696 Amino acid kinase family N900_02880 PF00583 Acetyltransferase (GNAT) family N900_02890 PF03562 MltA specific insert domain N900_02890 PF06725 3D domain N900_02895 PF00899 ThiF family N900_02900 PF02657 Fe-S metabolism associated domain N900_02905 PF00266 Aminotransferase class-V N900_02910 PF01965 DJ-1/PfpI family N900_02915 PF02558 Ketopantoate reductase PanE/ApbA N900_02915 PF08546 Ketopantoate reductase PanE/ApbA C terminal N900_02920 PF03502 Nucleoside-specific channel-forming protein, Tsx N900_02930 PF04542 Sigma-70 region 2 N900_02930 PF04545 Sigma-70, region 4 N900_02940 PF07690 Major Facilitator Superfamily N900_02945 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD N900_02955 PF05175 Methyltransferase small domain N900_02960 PF01722 BolA-like protein N900_02965 PF11973 NQRA C-terminal domain N900_02965 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) N900_02970 PF03116 NQR2, RnfD, RnfE family N900_02975 PF04205 FMN-binding domain N900_02980 PF02508 Rnf-Nqr subunit, membrane protein N900_02985 PF02508 Rnf-Nqr subunit, membrane protein N900_02990 PF00970 Oxidoreductase FAD-binding domain N900_02990 PF00175 Oxidoreductase NAD-binding domain N900_02990 PF00111 2Fe-2S iron-sulfur cluster binding domain N900_02995 PF02424 ApbE family N900_03005 PF00817 impB/mucB/samB family N900_03005 PF11798 IMS family HHH motif N900_03025 PF00872 Transposase, Mutator family N900_03030 PF00563 EAL domain N900_03030 PF01590 GAF domain N900_03030 PF00990 Diguanylate cyclase, GGDEF domain N900_03030 PF00360 Phytochrome region N900_03035 PF00209 Sodium:neurotransmitter symporter family N900_03045 PF08443 RimK-like ATP-grasp domain N900_03045 PF18030 RimK PreATP-grasp domain N900_03050 PF18030 RimK PreATP-grasp domain N900_03050 PF08443 RimK-like ATP-grasp domain N900_03055 PF07687 Peptidase dimerisation domain N900_03055 PF01546 Peptidase family M20/M25/M40 N900_03060 PF00860 Permease family N900_03065 PF00156 Phosphoribosyl transferase domain N900_03075 PF07417 Sigma factor-binding transcriptional regulator Crl N900_03080 PF01472 PUA domain N900_03080 PF00696 Amino acid kinase family N900_03085 PF00171 Aldehyde dehydrogenase family N900_03090 PF03477 ATP cone domain N900_03095 PF01872 RibD C-terminal domain N900_03095 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N900_03100 PF00677 Lumazine binding domain N900_03105 PF00925 GTP cyclohydrolase II N900_03105 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase N900_03110 PF00885 6,7-dimethyl-8-ribityllumazine synthase N900_03115 PF01029 NusB family N900_03120 PF00586 AIR synthase related protein, N-terminal domain N900_03120 PF02769 AIR synthase related protein, C-terminal domain N900_03125 PF04608 Phosphatidylglycerophosphatase A N900_03130 PF11944 Protein of unknown function (DUF3461) N900_03135 PF08335 GlnD PII-uridylyltransferase N900_03135 PF01966 HD domain N900_03135 PF01909 Nucleotidyltransferase domain N900_03140 PF00557 Metallopeptidase family M24 N900_03145 PF00318 Ribosomal protein S2 N900_03150 PF00889 Elongation factor TS N900_03155 PF00696 Amino acid kinase family N900_03160 PF01765 Ribosome recycling factor N900_03165 PF01255 Putative undecaprenyl diphosphate synthase N900_03175 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain N900_03175 PF13288 DXP reductoisomerase C-terminal domain N900_03175 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase N900_03180 PF02163 Peptidase family M50 N900_03180 PF17820 PDZ domain N900_03185 PF07244 Surface antigen variable number repeat N900_03185 PF01103 Surface antigen N900_03190 PF03938 Outer membrane protein (OmpH-like) N900_03195 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD N900_03195 PF00132 Bacterial transferase hexapeptide (six repeats) N900_03200 PF07977 FabA-like domain N900_03205 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 N900_03205 PF00132 Bacterial transferase hexapeptide (six repeats) N900_03210 PF02684 Lipid-A-disaccharide synthetase N900_03215 PF01351 Ribonuclease HII N900_03225 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit N900_03230 PF01171 PP-loop family N900_03230 PF09179 TilS substrate binding domain N900_03230 PF11734 TilS substrate C-terminal domain N900_03235 PF00034 Cytochrome c N900_03240 PF05870 Phenolic acid decarboxylase (PAD) N900_03245 PF00543 Nitrogen regulatory protein P-II N900_03250 PF03372 Endonuclease/Exonuclease/phosphatase family N900_03255 PF01476 LysM domain N900_03255 PF01464 Transglycosylase SLT domain N900_03260 PF16123 Hydroxyacylglutathione hydrolase C-terminus N900_03260 PF00753 Metallo-beta-lactamase superfamily N900_03265 PF08241 Methyltransferase domain N900_03270 PF00075 RNase H N900_03275 PF00929 Exonuclease N900_03285 PF02770 Acyl-CoA dehydrogenase, middle domain N900_03285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N900_03285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N900_03285 PF09317 Domain of unknown function (DUF1974) N900_03290 PF13580 SIS domain N900_03295 PF13230 Glutamine amidotransferases class-II N900_03300 PF00551 Formyl transferase N900_03305 PF00586 AIR synthase related protein, N-terminal domain N900_03305 PF02769 AIR synthase related protein, C-terminal domain N900_03315 PF00990 Diguanylate cyclase, GGDEF domain N900_03315 PF08448 PAS fold N900_03320 PF00849 RNA pseudouridylate synthase N900_03320 PF01479 S4 domain N900_03325 PF01713 Smr domain N900_03340 PF01963 TraB family N900_03345 PF03173 Putative carbohydrate binding domain N900_03345 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain N900_03345 PF02838 Glycosyl hydrolase family 20, domain 2 N900_03345 PF00728 Glycosyl hydrolase family 20, catalytic domain N900_03355 PF00403 Heavy-metal-associated domain N900_03360 PF00749 tRNA synthetases class I (E and Q), catalytic domain N900_03365 PF01389 OmpA-like transmembrane domain N900_03365 PF00691 OmpA family N900_03375 PF07715 TonB-dependent Receptor Plug Domain N900_03380 PF04954 Siderophore-interacting protein N900_03380 PF08021 Siderophore-interacting FAD-binding domain N900_03385 PF00550 Phosphopantetheine attachment site N900_03385 PF08242 Methyltransferase domain N900_03385 PF00501 AMP-binding enzyme N900_03385 PF00668 Condensation domain N900_03420 PF00072 Response regulator receiver domain N900_03420 PF01584 CheW-like domain N900_03425 PF01739 CheR methyltransferase, SAM binding domain N900_03425 PF03705 CheR methyltransferase, all-alpha domain N900_03430 PF00460 Flagella basal body rod protein N900_03435 PF00460 Flagella basal body rod protein N900_03435 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N900_03440 PF13861 FlgD Tudor-like domain N900_03440 PF13860 FlgD Ig-like domain N900_03440 PF03963 Flagellar hook capping protein - N-terminal region N900_03445 PF07559 Flagellar basal body protein FlaE N900_03445 PF00460 Flagella basal body rod protein N900_03445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N900_03450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N900_03450 PF00460 Flagella basal body rod protein N900_03455 PF00460 Flagella basal body rod protein N900_03455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N900_03460 PF02107 Flagellar L-ring protein N900_03465 PF02119 Flagellar P-ring protein N900_03470 PF10135 Rod binding protein N900_03470 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase N900_03475 PF07196 Flagellin hook IN motif N900_03475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N900_03485 PF00669 Bacterial flagellin N-terminal helical region N900_03485 PF07196 Flagellin hook IN motif N900_03485 PF00700 Bacterial flagellin C-terminal helical region N900_03490 PF00700 Bacterial flagellin C-terminal helical region N900_03490 PF00669 Bacterial flagellin N-terminal helical region N900_03490 PF07196 Flagellin hook IN motif N900_03520 PF06071 Protein of unknown function (DUF933) N900_03520 PF01926 50S ribosome-binding GTPase N900_03525 PF01195 Peptidyl-tRNA hydrolase N900_03530 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase N900_03530 PF14572 Phosphoribosyl synthetase-associated domain N900_03535 PF00288 GHMP kinases N terminal domain N900_03535 PF08544 GHMP kinases C terminal N900_03540 PF03550 Outer membrane lipoprotein LolB N900_03545 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain N900_03545 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain N900_03545 PF01488 Shikimate / quinate 5-dehydrogenase N900_03550 PF03462 PCRF domain N900_03550 PF00472 RF-1 domain N900_03555 PF17827 PrmC N-terminal domain N900_03555 PF13847 Methyltransferase domain N900_03560 PF04247 Invasion gene expression up-regulator, SirB N900_03565 PF13369 Transglutaminase-like superfamily N900_03570 PF00793 DAHP synthetase I family N900_03575 PF00149 Calcineurin-like phosphoesterase N900_03575 PF02872 5'-nucleotidase, C-terminal domain N900_03580 PF04073 Aminoacyl-tRNA editing domain N900_03585 PF00860 Permease family N900_03600 PF03358 NADPH-dependent FMN reductase N900_03605 PF03960 ArsC family N900_03610 PF01435 Peptidase family M48 N900_03610 PF13181 Tetratricopeptide repeat N900_03620 PF01594 AI-2E family transporter N900_03625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_03625 PF00672 HAMP domain N900_03625 PF02743 Cache domain N900_03630 PF00578 AhpC/TSA family N900_03640 PF00701 Dihydrodipicolinate synthetase family N900_03645 PF06804 NlpB/DapX lipoprotein N900_03655 PF02557 D-alanyl-D-alanine carboxypeptidase N900_03660 PF07687 Peptidase dimerisation domain N900_03660 PF01546 Peptidase family M20/M25/M40 N900_03665 PF03960 ArsC family N900_03680 PF11143 Protein of unknown function (DUF2919) N900_03685 PF04261 Dyp-type peroxidase family N900_03690 PF00700 Bacterial flagellin C-terminal helical region N900_03690 PF07196 Flagellin hook IN motif N900_03690 PF00669 Bacterial flagellin N-terminal helical region N900_03695 PF00669 Bacterial flagellin N-terminal helical region N900_03695 PF07196 Flagellin hook IN motif N900_03695 PF00700 Bacterial flagellin C-terminal helical region N900_03700 PF00700 Bacterial flagellin C-terminal helical region N900_03700 PF07196 Flagellin hook IN motif N900_03700 PF00669 Bacterial flagellin N-terminal helical region N900_03705 PF03646 FlaG protein N900_03710 PF07196 Flagellin hook IN motif N900_03710 PF07195 Flagellar hook-associated protein 2 C-terminus N900_03710 PF02465 Flagellar hook-associated protein 2 N-terminus N900_03720 PF02561 Flagellar protein FliS N900_03725 PF00158 Sigma-54 interaction domain N900_03725 PF02954 Bacterial regulatory protein, Fis family N900_03725 PF00072 Response regulator receiver domain N900_03730 PF00512 His Kinase A (phospho-acceptor) domain N900_03730 PF13426 PAS domain N900_03730 PF13493 Domain of unknown function (DUF4118) N900_03730 PF08447 PAS fold N900_03730 PF00989 PAS fold N900_03730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_03735 PF00158 Sigma-54 interaction domain N900_03735 PF02954 Bacterial regulatory protein, Fis family N900_03735 PF00072 Response regulator receiver domain N900_03740 PF02049 Flagellar hook-basal body complex protein FliE N900_03745 PF01514 Secretory protein of YscJ/FliF family N900_03745 PF08345 Flagellar M-ring protein C-terminal N900_03750 PF14842 FliG N-terminal domain N900_03750 PF14841 FliG middle domain N900_03750 PF01706 FliG C-terminal domain N900_03755 PF02108 Flagellar assembly protein FliH N900_03760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N900_03760 PF18269 T3SS EscN ATPase C-terminal domain N900_03775 PF03748 Flagellar basal body-associated protein FliL N900_03780 PF02154 Flagellar motor switch protein FliM N900_03780 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N900_03785 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N900_03790 PF04347 Flagellar biosynthesis protein, FliO N900_03795 PF00813 FliP family N900_03800 PF01313 Bacterial export proteins, family 3 N900_03805 PF01311 Bacterial export proteins, family 1 N900_03810 PF01312 FlhB HrpN YscU SpaS Family N900_03815 PF01713 Smr domain N900_03820 PF05175 Methyltransferase small domain N900_03825 PF01264 Chorismate synthase N900_03830 PF03458 UPF0126 domain N900_03835 PF04315 Elongation factor P hydroxylase N900_03840 PF08891 YfcL protein N900_03845 PF03358 NADPH-dependent FMN reductase N900_03850 PF05430 S-adenosyl-L-methionine-dependent methyltransferase N900_03850 PF01266 FAD dependent oxidoreductase N900_03855 PF02801 Beta-ketoacyl synthase, C-terminal domain N900_03855 PF00109 Beta-ketoacyl synthase, N-terminal domain N900_03860 PF11890 Domain of unknown function (DUF3410) N900_03860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N900_03860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N900_03865 PF01118 Semialdehyde dehydrogenase, NAD binding domain N900_03865 PF02774 Semialdehyde dehydrogenase, dimerisation domain N900_03870 PF01475 Ferric uptake regulator family N900_03880 PF03466 LysR substrate binding domain N900_03880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_03885 PF03788 LrgA family N900_03890 PF04172 LrgB-like family N900_03895 PF00258 Flavodoxin N900_03905 PF12697 Alpha/beta hydrolase family N900_03910 PF17206 SeqA protein N-terminal domain N900_03910 PF03925 SeqA protein C-terminal domain N900_03915 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N900_03915 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N900_03915 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N900_03915 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N900_03925 PF01784 NIF3 (NGG1p interacting factor 3) N900_03930 PF00285 Citrate synthase, C-terminal domain N900_03935 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit N900_03940 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit N900_03945 PF02910 Fumarate reductase flavoprotein C-term N900_03945 PF00890 FAD binding domain N900_03950 PF13085 2Fe-2S iron-sulfur cluster binding domain N900_03955 PF02779 Transketolase, pyrimidine binding domain N900_03955 PF16870 2-oxoglutarate dehydrogenase C-terminal N900_03955 PF00676 Dehydrogenase E1 component N900_03955 PF16078 2-oxoglutarate dehydrogenase N-terminus N900_03960 PF02817 e3 binding domain N900_03960 PF00364 Biotin-requiring enzyme N900_03960 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N900_03965 PF08442 ATP-grasp domain N900_03965 PF00549 CoA-ligase N900_03970 PF00549 CoA-ligase N900_03970 PF02629 CoA binding domain N900_03975 PF00950 ABC 3 transport family N900_03980 PF00005 ABC transporter N900_03985 PF01297 Zinc-uptake complex component A periplasmic N900_03990 PF12833 Helix-turn-helix domain N900_03990 PF02311 AraC-like ligand binding domain N900_03995 PF04023 FeoA domain N900_04000 PF02421 Ferrous iron transport protein B N900_04000 PF07664 Ferrous iron transport protein B C terminus N900_04000 PF07670 Nucleoside recognition N900_04015 PF00750 tRNA synthetases class I (R) N900_04015 PF05746 DALR anticodon binding domain N900_04015 PF03485 Arginyl tRNA synthetase N terminal domain N900_04025 PF05193 Peptidase M16 inactive domain N900_04025 PF00675 Insulinase (Peptidase family M16) N900_04030 PF00300 Histidine phosphatase superfamily (branch 1) N900_04035 PF00771 FHIPEP family N900_04040 PF00448 SRP54-type protein, GTPase domain N900_04045 PF10609 NUBPL iron-transfer P-loop NTPase N900_04050 PF04545 Sigma-70, region 4 N900_04050 PF04539 Sigma-70 region 3 N900_04050 PF04542 Sigma-70 region 2 N900_04055 PF00072 Response regulator receiver domain N900_04060 PF04344 Chemotaxis phosphatase, CheZ N900_04065 PF07194 P2 response regulator binding domain N900_04065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_04065 PF02895 Signal transducing histidine kinase, homodimeric domain N900_04065 PF01584 CheW-like domain N900_04065 PF01627 Hpt domain N900_04070 PF01339 CheB methylesterase N900_04070 PF00072 Response regulator receiver domain N900_04075 PF13614 AAA domain N900_04085 PF01584 CheW-like domain N900_04095 PF00005 ABC transporter N900_04100 PF03379 CcmB protein N900_04105 PF01578 Cytochrome C assembly protein N900_04110 PF04995 Heme exporter protein D (CcmD) N900_04115 PF03100 CcmE N900_04120 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal N900_04120 PF01578 Cytochrome C assembly protein N900_04125 PF08534 Redoxin N900_04130 PF03918 Cytochrome C biogenesis protein N900_04140 PF04333 MlaA lipoprotein N900_04155 PF02777 Iron/manganese superoxide dismutases, C-terminal domain N900_04155 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain N900_04160 PF00462 Glutaredoxin N900_04165 PF01751 Toprim domain N900_04165 PF01131 DNA topoisomerase N900_04170 PF00850 Histone deacetylase domain N900_04185 PF11893 Domain of unknown function (DUF3413) N900_04185 PF00884 Sulfatase N900_04190 PF07208 Protein of unknown function (DUF1414) N900_04195 PF04245 37-kD nucleoid-associated bacterial protein N900_04205 PF03553 Na+/H+ antiporter family N900_04210 PF02774 Semialdehyde dehydrogenase, dimerisation domain N900_04210 PF01118 Semialdehyde dehydrogenase, NAD binding domain N900_04215 PF01914 MarC family integral membrane protein N900_04220 PF00171 Aldehyde dehydrogenase family N900_04220 PF00465 Iron-containing alcohol dehydrogenase N900_04230 PF00916 Sulfate permease family N900_04230 PF01740 STAS domain N900_04235 PF12111 Polyribonucleotide phosphorylase C terminal N900_04235 PF10150 Ribonuclease E/G family N900_04235 PF00575 S1 RNA binding domain N900_04245 PF00849 RNA pseudouridylate synthase N900_04245 PF01479 S4 domain N900_04250 PF02545 Maf-like protein N900_04255 PF02620 Large ribosomal RNA subunit accumulation protein YceD N900_04260 PF01783 Ribosomal L32p protein family N900_04265 PF02504 Fatty acid synthesis protein N900_04270 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N900_04270 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N900_04275 PF00698 Acyl transferase domain N900_04285 PF00550 Phosphopantetheine attachment site N900_04290 PF00109 Beta-ketoacyl synthase, N-terminal domain N900_04290 PF02801 Beta-ketoacyl synthase, C-terminal domain N900_04295 PF01063 Amino-transferase class IV N900_04300 PF02618 YceG-like family N900_04305 PF02223 Thymidylate kinase N900_04310 PF09115 DNA polymerase III, delta subunit, C terminal N900_04315 PF01026 TatD related DNase N900_04320 PF02378 Phosphotransferase system, EIIC N900_04320 PF00367 phosphotransferase system, EIIB N900_04330 PF00209 Sodium:neurotransmitter symporter family N900_04345 PF01734 Patatin-like phospholipase N900_04350 PF02887 Pyruvate kinase, alpha/beta domain N900_04350 PF00224 Pyruvate kinase, barrel domain N900_04355 PF00480 ROK family N900_04360 PF01584 CheW-like domain N900_04360 PF00072 Response regulator receiver domain N900_04375 PF13847 Methyltransferase domain N900_04385 PF01263 Aldose 1-epimerase N900_04390 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N900_04390 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N900_04395 PF01641 SelR domain N900_04405 PF07023 Protein of unknown function (DUF1315) N900_04410 PF17763 Glutaminase/Asparaginase C-terminal domain N900_04410 PF00710 Asparaginase, N-terminal N900_04415 PF01343 Peptidase family S49 N900_04420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N900_04420 PF07992 Pyridine nucleotide-disulphide oxidoreductase N900_04425 PF00551 Formyl transferase N900_04425 PF01842 ACT domain N900_04435 PF04851 Type III restriction enzyme, res subunit N900_04435 PF13307 Helicase C-terminal domain N900_04440 PF00814 Glycoprotease family N900_04455 PF00561 alpha/beta hydrolase fold N900_04460 PF13193 AMP-binding enzyme C-terminal domain N900_04460 PF00501 AMP-binding enzyme N900_04465 PF01612 3'-5' exonuclease N900_04465 PF00570 HRDC domain N900_04485 PF13286 Phosphohydrolase-associated domain N900_04485 PF01966 HD domain N900_04495 PF00155 Aminotransferase class I and II N900_04500 PF00425 chorismate binding enzyme N900_04505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N900_04505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N900_04505 PF16582 Middle domain of thiamine pyrophosphate N900_04510 PF12697 Alpha/beta hydrolase family N900_04515 PF00378 Enoyl-CoA hydratase/isomerase N900_04520 PF13378 Enolase C-terminal domain-like N900_04525 PF13193 AMP-binding enzyme C-terminal domain N900_04525 PF00501 AMP-binding enzyme N900_04530 PF03594 Benzoate membrane transport protein N900_04535 PF01381 Helix-turn-helix N900_04535 PF07883 Cupin domain N900_04540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_04540 PF12729 Four helix bundle sensory module for signal transduction N900_04540 PF00672 HAMP domain N900_04550 PF07690 Major Facilitator Superfamily N900_04570 PF04170 NlpE N-terminal domain N900_04575 PF03776 Septum formation topological specificity factor MinE N900_04580 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain N900_04585 PF05209 Septum formation inhibitor MinC, N-terminal domain N900_04585 PF03775 Septum formation inhibitor MinC, C-terminal domain N900_04590 PF05166 YcgL domain N900_04595 PF13406 Transglycosylase SLT domain N900_04600 PF03466 LysR substrate binding domain N900_04600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_04610 PF07662 Na+ dependent nucleoside transporter C-terminus N900_04610 PF07670 Nucleoside recognition N900_04610 PF01773 Na+ dependent nucleoside transporter N-terminus N900_04615 PF00704 Glycosyl hydrolases family 18 N900_04620 PF03264 NapC/NirT cytochrome c family, N-terminal region N900_04625 PF01568 Molydopterin dinucleotide binding domain N900_04625 PF18364 Molybdopterin oxidoreductase N-terminal domain N900_04625 PF00384 Molybdopterin oxidoreductase N900_04635 PF03466 LysR substrate binding domain N900_04635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_04645 PF01494 FAD binding domain N900_04650 PF02668 Taurine catabolism dioxygenase TauD, TfdA family N900_04655 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain N900_04655 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain N900_04700 PF13188 PAS domain N900_04700 PF00990 Diguanylate cyclase, GGDEF domain N900_04700 PF03707 Bacterial signalling protein N terminal repeat N900_04700 PF00563 EAL domain N900_04715 PF02696 Uncharacterized ACR, YdiU/UPF0061 family N900_04720 PF03480 Bacterial extracellular solute-binding protein, family 7 N900_04725 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component N900_04730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component N900_04735 PF00158 Sigma-54 interaction domain N900_04735 PF02954 Bacterial regulatory protein, Fis family N900_04735 PF00072 Response regulator receiver domain N900_04740 PF00512 His Kinase A (phospho-acceptor) domain N900_04740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_04740 PF02743 Cache domain N900_04750 PF05698 Bacterial trigger factor protein (TF) C-terminus N900_04750 PF05697 Bacterial trigger factor protein (TF) N900_04750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N900_04755 PF00574 Clp protease N900_04760 PF07724 AAA domain (Cdc48 subfamily) N900_04760 PF10431 C-terminal, D2-small domain, of ClpB protein N900_04760 PF06689 ClpX C4-type zinc finger N900_04765 PF00004 ATPase family associated with various cellular activities (AAA) N900_04765 PF05362 Lon protease (S16) C-terminal proteolytic domain N900_04765 PF02190 ATP-dependent protease La (LON) substrate-binding domain N900_04770 PF00216 Bacterial DNA-binding protein N900_04775 PF13145 PPIC-type PPIASE domain N900_04785 PF02224 Cytidylate kinase N900_04790 PF00575 S1 RNA binding domain N900_04795 PF00216 Bacterial DNA-binding protein N900_04800 PF06305 Lipopolysaccharide assembly protein A domain N900_04805 PF18073 Rubredoxin metal binding domain N900_04810 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family N900_04815 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) N900_04830 PF03466 LysR substrate binding domain N900_04830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_04840 PF05222 Alanine dehydrogenase/PNT, N-terminal domain N900_04840 PF01262 Alanine dehydrogenase/PNT, C-terminal domain N900_04845 PF01037 Lrp/AsnC ligand binding domain N900_04850 PF01580 FtsK/SpoIIIE family N900_04850 PF13491 4TM region of DNA translocase FtsK/SpoIIIE N900_04850 PF09397 Ftsk gamma domain N900_04850 PF17854 FtsK alpha domain N900_04855 PF02600 Disulfide bond formation protein DsbB N900_04860 PF06450 Bacterial Na+/H+ antiporter B (NhaB) N900_04865 PF07840 FadR C-terminal domain N900_04865 PF00392 Bacterial regulatory proteins, gntR family N900_04875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_04875 PF00672 HAMP domain N900_04880 PF01230 HIT domain N900_04895 PF08139 Prokaryotic membrane lipoprotein lipid attachment site N900_04895 PF13036 Peptidoglycan-synthase activator LpoB N900_04905 PF05728 Uncharacterised protein family (UPF0227) N900_04910 PF07992 Pyridine nucleotide-disulphide oxidoreductase N900_04920 PF12563 Hemolytic toxin N terminal N900_04920 PF16458 Beta-prism lectin N900_04920 PF07968 Leukocidin/Hemolysin toxin family N900_04930 PF02559 CarD-like/TRCF domain N900_04930 PF00270 DEAD/DEAH box helicase N900_04930 PF00271 Helicase conserved C-terminal domain N900_04930 PF03461 TRCF domain N900_04930 PF17757 UvrB interaction domain N900_04940 PF02687 FtsX-like permease family N900_04940 PF12704 MacB-like periplasmic core domain N900_04945 PF00005 ABC transporter N900_04950 PF12704 MacB-like periplasmic core domain N900_04950 PF02687 FtsX-like permease family N900_04960 PF00753 Metallo-beta-lactamase superfamily N900_04960 PF13567 Domain of unknown function (DUF4131) N900_04960 PF03772 Competence protein N900_04965 PF00664 ABC transporter transmembrane region N900_04965 PF00005 ABC transporter N900_04970 PF02606 Tetraacyldisaccharide-1-P 4'-kinase N900_04975 PF03966 Trm112p-like protein N900_04980 PF02348 Cytidylyltransferase N900_04985 PF04293 SpoVR like protein N900_04990 PF04285 Protein of unknown function (DUF444) N900_04995 PF06798 PrkA serine protein kinase C-terminal domain N900_04995 PF08298 PrkA AAA domain N900_05000 PF03887 YfbU domain N900_05010 PF04055 Radical SAM superfamily N900_05015 PF00672 HAMP domain N900_05015 PF12729 Four helix bundle sensory module for signal transduction N900_05015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_05025 PF01228 Glycine radical N900_05035 PF00005 ABC transporter N900_05040 PF00497 Bacterial extracellular solute-binding proteins, family 3 N900_05045 PF00528 Binding-protein-dependent transport system inner membrane component N900_05050 PF00528 Binding-protein-dependent transport system inner membrane component N900_05055 PF03372 Endonuclease/Exonuclease/phosphatase family N900_05060 PF00672 HAMP domain N900_05060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_05065 PF10689 Protein of unknown function (DUF2496) N900_05070 PF07445 Primosomal replication protein priC N900_05075 PF01925 Sulfite exporter TauE/SafE N900_05080 PF13307 Helicase C-terminal domain N900_05080 PF06733 DEAD_2 N900_05085 PF13609 Gram-negative porin N900_05090 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) N900_05095 PF02810 SEC-C motif N900_05100 PF00563 EAL domain N900_05100 PF08668 HDOD domain N900_05105 PF00149 Calcineurin-like phosphoesterase N900_05110 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD N900_05115 PF09190 DALR domain N900_05115 PF01406 tRNA synthetases class I (C) catalytic domain N900_05120 PF02075 Crossover junction endodeoxyribonuclease RuvC N900_05125 PF07499 RuvA, C-terminal domain N900_05125 PF01330 RuvA N terminal domain N900_05130 PF17864 RuvB AAA lid domain N900_05130 PF05491 RuvB C-terminal winged helix domain N900_05130 PF05496 Holliday junction DNA helicase RuvB P-loop domain N900_05135 PF01654 Cytochrome bd terminal oxidase subunit I N900_05140 PF02322 Cytochrome bd terminal oxidase subunit II N900_05145 PF08173 Membrane bound YbgT-like protein N900_05150 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) N900_05155 PF03061 Thioesterase superfamily N900_05160 PF01618 MotA/TolQ/ExbB proton channel family N900_05165 PF02472 Biopolymer transport protein ExbD/TolR N900_05175 PF04052 TolB amino-terminal domain N900_05175 PF07676 WD40-like Beta Propeller Repeat N900_05180 PF00691 OmpA family N900_05190 PF02445 Quinolinate synthetase A protein N900_05200 PF00072 Response regulator receiver domain N900_05200 PF00512 His Kinase A (phospho-acceptor) domain N900_05200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_05200 PF09308 LuxQ, periplasmic N900_05205 PF06610 L-alanine exporter N900_05210 PF01238 Phosphomannose isomerase type I N900_05215 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N900_05215 PF02378 Phosphotransferase system, EIIC N900_05215 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N900_05220 PF12833 Helix-turn-helix domain N900_05230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N900_05250 PF00171 Aldehyde dehydrogenase family N900_05255 PF01590 GAF domain N900_05255 PF00158 Sigma-54 interaction domain N900_05255 PF02954 Bacterial regulatory protein, Fis family N900_05260 PF09905 DNA-binding protein VF530 N900_05270 PF00875 DNA photolyase N900_05270 PF03441 FAD binding domain of DNA photolyase N900_05345 PF00005 ABC transporter N900_05390 PF01527 Transposase N900_05395 PF00665 Integrase core domain N900_05410 PF04002 RadC-like JAB domain N900_05420 PF09264 Vibrio cholerae sialidase, lectin insertion N900_05420 PF13088 BNR repeat-like domain N900_05425 PF01979 Amidohydrolase family N900_05430 PF00480 ROK family N900_05435 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase N900_05440 PF03480 Bacterial extracellular solute-binding protein, family 7 N900_05445 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component N900_05450 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component N900_05455 PF00701 Dihydrodipicolinate synthetase family N900_05460 PF01380 SIS domain N900_05460 PF01418 Helix-turn-helix domain, rpiR family N900_05465 PF01344 Kelch motif N900_05470 PF07646 Kelch motif N900_05490 PF02384 N-6 DNA Methylase N900_05510 PF18766 SWI2/SNF2 ATPase N900_05510 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) N900_05510 PF11867 Domain of unknown function (DUF3387) N900_05530 PF12419 SNF2 Helicase protein N900_05530 PF00271 Helicase conserved C-terminal domain N900_05530 PF00176 SNF2 family N-terminal domain N900_05535 PF13356 Arm DNA-binding domain N900_05535 PF00589 Phage integrase family N900_05540 PF13356 Arm DNA-binding domain N900_05540 PF00589 Phage integrase family N900_05550 PF00873 AcrB/AcrD/AcrF family N900_05555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N900_05565 PF02470 MlaD protein N900_05570 PF04403 Paraquat-inducible protein A N900_05575 PF05552 Conserved TM helix N900_05575 PF00924 Mechanosensitive ion channel N900_05595 PF08362 YcdC-like protein, C-terminal region N900_05595 PF00440 Bacterial regulatory proteins, tetR family N900_05600 PF00171 Aldehyde dehydrogenase family N900_05605 PF07383 Protein of unknown function (DUF1496) N900_05615 PF00440 Bacterial regulatory proteins, tetR family N900_05615 PF16295 Tetracyclin repressor-like, C-terminal domain N900_05620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N900_05620 PF02770 Acyl-CoA dehydrogenase, middle domain N900_05620 PF09317 Domain of unknown function (DUF1974) N900_05620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N900_05625 PF07055 Enoyl reductase FAD binding domain N900_05625 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase N900_05625 PF12241 Trans-2-enoyl-CoA reductase catalytic region N900_05630 PF01176 Translation initiation factor 1A / IF-1 N900_05635 PF04376 Arginine-tRNA-protein transferase, N terminus N900_05635 PF04377 Arginine-tRNA-protein transferase, C terminus N900_05640 PF03588 Leucyl/phenylalanyl-tRNA protein transferase N900_05650 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) N900_05655 PF10692 Protein of unknown function (DUF2498) N900_05660 PF08272 Topoisomerase I zinc-ribbon-like N900_05660 PF01131 DNA topoisomerase N900_05660 PF01751 Toprim domain N900_05660 PF01396 Topoisomerase DNA binding C4 zinc finger N900_05670 PF00483 Nucleotidyl transferase N900_05675 PF08323 Starch synthase catalytic domain N900_05675 PF00534 Glycosyl transferases group 1 N900_05695 PF04994 TfoX C-terminal domain N900_05695 PF04993 TfoX N-terminal domain N900_05700 PF00356 Bacterial regulatory proteins, lacI family N900_05705 PF02613 Nitrate reductase delta subunit N900_05710 PF00486 Transcriptional regulatory protein, C terminal N900_05710 PF00072 Response regulator receiver domain N900_05715 PF02698 DUF218 domain N900_05725 PF17193 MukF C-terminal domain N900_05725 PF17192 MukF middle domain N900_05725 PF03882 MukF winged-helix domain N900_05730 PF04288 MukE-like family N900_05735 PF16330 MukB hinge domain N900_05735 PF04310 MukB N-terminal N900_05740 PF01037 Lrp/AsnC ligand binding domain N900_05745 PF01810 LysE type translocator N900_05750 PF08497 Radical SAM N-terminal N900_05750 PF04055 Radical SAM superfamily N900_05750 PF11842 Domain of unknown function (DUF3362) N900_05755 PF00563 EAL domain N900_05755 PF00990 Diguanylate cyclase, GGDEF domain N900_05755 PF03707 Bacterial signalling protein N terminal repeat N900_05760 PF00675 Insulinase (Peptidase family M16) N900_05760 PF05193 Peptidase M16 inactive domain N900_05775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_05775 PF03466 LysR substrate binding domain N900_05780 PF01717 Cobalamin-independent synthase, Catalytic domain N900_05780 PF08267 Cobalamin-independent synthase, N-terminal domain N900_05790 PF03795 YCII-related domain N900_05795 PF03061 Thioesterase superfamily N900_05800 PF04279 Intracellular septation protein A N900_05810 PF02698 DUF218 domain N900_05815 PF01370 NAD dependent epimerase/dehydratase family N900_05825 PF01226 Formate/nitrite transporter N900_05835 PF06796 Periplasmic nitrate reductase protein NapE N900_05840 PF03264 NapC/NirT cytochrome c family, N-terminal region N900_05845 PF01568 Molydopterin dinucleotide binding domain N900_05845 PF18364 Molybdopterin oxidoreductase N-terminal domain N900_05845 PF00384 Molybdopterin oxidoreductase N900_05865 PF01368 DHH family N900_05865 PF02833 DHHA2 domain N900_05880 PF00005 ABC transporter N900_05885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N900_05885 PF00005 ABC transporter N900_05890 PF12911 N-terminal TM domain of oligopeptide transport permease C N900_05890 PF00528 Binding-protein-dependent transport system inner membrane component N900_05895 PF00528 Binding-protein-dependent transport system inner membrane component N900_05900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N900_05905 PF00158 Sigma-54 interaction domain N900_05905 PF02954 Bacterial regulatory protein, Fis family N900_05910 PF04012 PspA/IM30 family N900_05925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N900_05925 PF00529 HlyD membrane-fusion protein of T1SS N900_05930 PF13533 Biotin-lipoyl like N900_05935 PF00873 AcrB/AcrD/AcrF family N900_05940 PF03352 Methyladenine glycosylase N900_05945 PF01053 Cys/Met metabolism PLP-dependent enzyme N900_05950 PF13396 Phospholipase_D-nuclease N-terminal N900_05950 PF13091 PLD-like domain N900_05955 PF00209 Sodium:neurotransmitter symporter family N900_05960 PF00849 RNA pseudouridylate synthase N900_05965 PF01066 CDP-alcohol phosphatidyltransferase N900_05970 PF00005 ABC transporter N900_05975 PF00528 Binding-protein-dependent transport system inner membrane component N900_05980 PF13416 Bacterial extracellular solute-binding protein N900_05990 PF06945 Protein of unknown function (DUF1289) N900_06005 PF00005 ABC transporter N900_06010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N900_06015 PF03222 Tryptophan/tyrosine permease family N900_06030 PF03448 MgtE intracellular N domain N900_06030 PF01769 Divalent cation transporter N900_06030 PF00571 CBS domain N900_06035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_06035 PF00512 His Kinase A (phospho-acceptor) domain N900_06035 PF09308 LuxQ, periplasmic N900_06035 PF00072 Response regulator receiver domain N900_06040 PF00563 EAL domain N900_06040 PF03707 Bacterial signalling protein N terminal repeat N900_06040 PF00990 Diguanylate cyclase, GGDEF domain N900_06060 PF12793 Sugar transport-related sRNA regulator N-term N900_06060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N900_06080 PF00672 HAMP domain N900_06080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_06080 PF12729 Four helix bundle sensory module for signal transduction N900_06095 PF00360 Phytochrome region N900_06095 PF00990 Diguanylate cyclase, GGDEF domain N900_06095 PF00563 EAL domain N900_06095 PF01590 GAF domain N900_06100 PF01386 Ribosomal L25p family N900_06110 PF00072 Response regulator receiver domain N900_06110 PF00486 Transcriptional regulatory protein, C terminal N900_06120 PF00271 Helicase conserved C-terminal domain N900_06120 PF04851 Type III restriction enzyme, res subunit N900_06125 PF00849 RNA pseudouridylate synthase N900_06125 PF01479 S4 domain N900_06130 PF07690 Major Facilitator Superfamily N900_06140 PF13460 NAD(P)H-binding N900_06140 PF11066 Protein of unknown function (DUF2867) N900_06145 PF01554 MatE N900_06150 PF00005 ABC transporter N900_06165 PF06965 Na+/H+ antiporter 1 N900_06170 PF00202 Aminotransferase class-III N900_06175 PF03435 Saccharopine dehydrogenase NADP binding domain N900_06175 PF16653 Saccharopine dehydrogenase C-terminal domain N900_06185 PF00691 OmpA family N900_06185 PF05736 OprF membrane domain N900_06190 PF02321 Outer membrane efflux protein N900_06210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_06210 PF03466 LysR substrate binding domain N900_06220 PF01863 Protein of unknown function DUF45 N900_06225 PF05971 RNA methyltransferase N900_06240 PF04204 Homoserine O-succinyltransferase N900_06260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N900_06275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_06275 PF00989 PAS fold N900_06275 PF17203 Single cache domain 3 N900_06275 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain N900_06280 PF12431 Transcriptional regulator N900_06280 PF00072 Response regulator receiver domain N900_06290 PF00072 Response regulator receiver domain N900_06290 PF01584 CheW-like domain N900_06305 PF00990 Diguanylate cyclase, GGDEF domain N900_06305 PF00072 Response regulator receiver domain N900_06330 PF07690 Major Facilitator Superfamily N900_06335 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain N900_06335 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain N900_06340 PF08544 GHMP kinases C terminal N900_06340 PF10509 Galactokinase galactose-binding signature N900_06340 PF00288 GHMP kinases N terminal domain N900_06345 PF01263 Aldose 1-epimerase N900_06350 PF00990 Diguanylate cyclase, GGDEF domain N900_06355 PF00563 EAL domain N900_06355 PF00990 Diguanylate cyclase, GGDEF domain N900_06355 PF17154 Gammaproteobacterial periplasmic sensor domain N900_06355 PF00672 HAMP domain N900_06365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N900_06365 PF00205 Thiamine pyrophosphate enzyme, central domain N900_06365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N900_06370 PF03306 Alpha-acetolactate decarboxylase N900_06375 PF03306 Alpha-acetolactate decarboxylase N900_06380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_06380 PF03466 LysR substrate binding domain N900_06390 PF00199 Catalase N900_06390 PF06628 Catalase-related immune-responsive N900_06400 PF00080 Copper/zinc superoxide dismutase (SODC) N900_06405 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) N900_06410 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus N900_06410 PF00361 Proton-conducting membrane transporter N900_06415 PF03466 LysR substrate binding domain N900_06415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_06420 PF13193 AMP-binding enzyme C-terminal domain N900_06420 PF00501 AMP-binding enzyme N900_06450 PF10415 Fumarase C C-terminus N900_06450 PF00206 Lyase N900_06460 PF01654 Cytochrome bd terminal oxidase subunit I N900_06465 PF02322 Cytochrome bd terminal oxidase subunit II N900_06470 PF00005 ABC transporter N900_06470 PF12704 MacB-like periplasmic core domain N900_06470 PF02687 FtsX-like permease family N900_06475 PF12704 MacB-like periplasmic core domain N900_06475 PF00005 ABC transporter N900_06475 PF02687 FtsX-like permease family N900_06480 PF12704 MacB-like periplasmic core domain N900_06480 PF00005 ABC transporter N900_06480 PF02687 FtsX-like permease family N900_06490 PF00529 HlyD membrane-fusion protein of T1SS N900_06500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_06500 PF03466 LysR substrate binding domain N900_06505 PF00141 Peroxidase N900_06510 PF00232 Glycosyl hydrolase family 1 N900_06515 PF00356 Bacterial regulatory proteins, lacI family N900_06520 PF01042 Endoribonuclease L-PSP N900_06525 PF04074 YhcH/YjgK/YiaL N900_06530 PF03009 Glycerophosphoryl diester phosphodiesterase family N900_06535 PF00455 DeoR C terminal sensor domain N900_06535 PF08220 DeoR-like helix-turn-helix domain N900_06540 PF00005 ABC transporter N900_06540 PF17912 MalK OB fold domain N900_06545 PF00528 Binding-protein-dependent transport system inner membrane component N900_06550 PF00528 Binding-protein-dependent transport system inner membrane component N900_06555 PF13416 Bacterial extracellular solute-binding protein N900_06565 PF01618 MotA/TolQ/ExbB proton channel family N900_06570 PF01618 MotA/TolQ/ExbB proton channel family N900_06575 PF02472 Biopolymer transport protein ExbD/TolR N900_06580 PF03544 Gram-negative bacterial TonB protein C-terminal N900_06590 PF01068 ATP dependent DNA ligase domain N900_06590 PF14743 DNA ligase OB-like domain N900_06600 PF01554 MatE N900_06620 PF00877 NlpC/P60 family N900_06625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_06625 PF02743 Cache domain N900_06625 PF00672 HAMP domain N900_06640 PF00480 ROK family N900_06665 PF00994 Probable molybdopterin binding domain N900_06665 PF03454 MoeA C-terminal region (domain IV) N900_06665 PF03453 MoeA N-terminal region (domain I and II) N900_06670 PF12804 MobA-like NTP transferase domain N900_06675 PF08402 TOBE domain N900_06675 PF00005 ABC transporter N900_06680 PF00528 Binding-protein-dependent transport system inner membrane component N900_06685 PF12849 PBP superfamily domain N900_06690 PF02954 Bacterial regulatory protein, Fis family N900_06690 PF00072 Response regulator receiver domain N900_06690 PF00158 Sigma-54 interaction domain N900_06695 PF00512 His Kinase A (phospho-acceptor) domain N900_06695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_06695 PF00989 PAS fold N900_06700 PF00005 ABC transporter N900_06700 PF12848 ABC transporter N900_06705 PF02634 FdhD/NarQ family N900_06725 PF02613 Nitrate reductase delta subunit N900_06735 PF04879 Molybdopterin oxidoreductase Fe4S4 domain N900_06735 PF01568 Molydopterin dinucleotide binding domain N900_06735 PF00384 Molybdopterin oxidoreductase N900_06740 PF13247 4Fe-4S dicluster domain N900_06755 PF02146 Sir2 family N900_06760 PF04461 Protein of unknown function (DUF520) N900_06765 PF00793 DAHP synthetase I family N900_06780 PF13509 S1 domain N900_06780 PF17783 CvfB-like winged helix domain N900_06785 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF N900_06785 PF01189 16S rRNA methyltransferase RsmB/F N900_06785 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF N900_06790 PF02470 MlaD protein N900_06795 PF04403 Paraquat-inducible protein A N900_06800 PF00005 ABC transporter N900_06800 PF00664 ABC transporter transmembrane region N900_06805 PF13185 GAF domain N900_06810 PF17516 ProQ C-terminal domain N900_06810 PF04352 ProQ/FINO family N900_06815 PF17804 Tail specific protease N-terminal domain N900_06815 PF03572 Peptidase family S41 N900_06815 PF00595 PDZ domain N900_06815 PF11818 C-terminal domain of tail specific protease (DUF3340) N900_06825 PF17432 Domain of unknown function (DUF3458_C) ARM repeats N900_06825 PF11940 Domain of unknown function (DUF3458) Ig-like fold N900_06825 PF01433 Peptidase family M1 domain N900_06835 PF05088 Bacterial NAD-glutamate dehydrogenase N900_06840 PF01180 Dihydroorotate dehydrogenase N900_06845 PF07126 Cell-division protein ZapC N900_06850 PF10672 S-adenosylmethionine-dependent methyltransferase N900_06850 PF02926 THUMP domain N900_06850 PF01170 Putative RNA methylase family UPF0020 N900_06870 PF07977 FabA-like domain N900_06875 PF13654 AAA domain N900_06875 PF05362 Lon protease (S16) C-terminal proteolytic domain N900_06880 PF17414 MatP C-terminal ribbon-helix-helix domain N900_06880 PF06303 MatP N-terminal domain N900_06895 PF00872 Transposase, Mutator family N900_06900 PF00665 Integrase core domain N900_06905 PF01527 Transposase N900_06980 PF01381 Helix-turn-helix N900_07000 PF01381 Helix-turn-helix N900_07025 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII N900_07030 PF10734 Protein of unknown function (DUF2523) N900_07035 PF05707 Zonular occludens toxin (Zot) N900_07040 PF01375 Heat-labile enterotoxin alpha chain N900_07045 PF01376 Heat-labile enterotoxin beta chain N900_07055 PF02794 RTX toxin acyltransferase family N900_07065 PF00664 ABC transporter transmembrane region N900_07065 PF03412 Peptidase C39 family N900_07065 PF00005 ABC transporter N900_07075 PF03412 Peptidase C39 family N900_07075 PF00664 ABC transporter transmembrane region N900_07075 PF00005 ABC transporter N900_07080 PF00512 His Kinase A (phospho-acceptor) domain N900_07080 PF09308 LuxQ, periplasmic N900_07080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_07080 PF00072 Response regulator receiver domain N900_07095 PF00115 Cytochrome C and Quinol oxidase polypeptide I N900_07110 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP N900_07110 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N900_07120 PF00403 Heavy-metal-associated domain N900_07135 PF13545 Crp-like helix-turn-helix domain N900_07135 PF00027 Cyclic nucleotide-binding domain N900_07140 PF00582 Universal stress protein family N900_07145 PF01171 PP-loop family N900_07165 PF00005 ABC transporter N900_07165 PF08402 TOBE domain N900_07170 PF00528 Binding-protein-dependent transport system inner membrane component N900_07175 PF00528 Binding-protein-dependent transport system inner membrane component N900_07180 PF13416 Bacterial extracellular solute-binding protein N900_07185 PF13416 Bacterial extracellular solute-binding protein N900_07200 PF01235 Sodium:alanine symporter family N900_07205 PF01810 LysE type translocator N900_07230 PF04717 Type VI secretion system, phage-baseplate injector N900_07230 PF16671 Actin cross-linking domain N900_07235 PF05638 Type VI secretion system effector, Hcp N900_07240 PF02074 Carboxypeptidase Taq (M32) metallopeptidase N900_07245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_07245 PF00672 HAMP domain N900_07245 PF02743 Cache domain N900_07250 PF07690 Major Facilitator Superfamily N900_07255 PF00529 HlyD membrane-fusion protein of T1SS N900_07255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N900_07260 PF02321 Outer membrane efflux protein N900_07270 PF00270 DEAD/DEAH box helicase N900_07270 PF00271 Helicase conserved C-terminal domain N900_07275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_07275 PF08447 PAS fold N900_07275 PF13426 PAS domain N900_07280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_07280 PF00672 HAMP domain N900_07280 PF12729 Four helix bundle sensory module for signal transduction N900_07285 PF17202 Single cache domain 3 N900_07285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_07285 PF00672 HAMP domain N900_07290 PF01584 CheW-like domain N900_07295 PF01339 CheB methylesterase N900_07295 PF00072 Response regulator receiver domain N900_07305 PF01739 CheR methyltransferase, SAM binding domain N900_07305 PF03705 CheR methyltransferase, all-alpha domain N900_07310 PF01584 CheW-like domain N900_07310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_07310 PF01627 Hpt domain N900_07310 PF00072 Response regulator receiver domain N900_07315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_07315 PF02895 Signal transducing histidine kinase, homodimeric domain N900_07315 PF01584 CheW-like domain N900_07315 PF07194 P2 response regulator binding domain N900_07315 PF01627 Hpt domain N900_07330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_07330 PF00672 HAMP domain N900_07335 PF00893 Small Multidrug Resistance protein N900_07340 PF00875 DNA photolyase N900_07340 PF03441 FAD binding domain of DNA photolyase N900_07345 PF07690 Major Facilitator Superfamily N900_07350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_07350 PF03466 LysR substrate binding domain N900_07355 PF03099 Biotin/lipoate A/B protein ligase family N900_07355 PF10437 Bacterial lipoate protein ligase C-terminus N900_07360 PF00012 Hsp70 protein N900_07370 PF11898 Domain of unknown function (DUF3418) N900_07370 PF04408 Helicase associated domain (HA2) N900_07370 PF00271 Helicase conserved C-terminal domain N900_07370 PF00270 DEAD/DEAH box helicase N900_07370 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold N900_07390 PF00990 Diguanylate cyclase, GGDEF domain N900_07390 PF03707 Bacterial signalling protein N terminal repeat N900_07390 PF00563 EAL domain N900_07400 PF00012 Hsp70 protein N900_07405 PF00012 Hsp70 protein N900_07410 PF17158 Membrane-associated sensor, integral membrane domain N900_07410 PF00990 Diguanylate cyclase, GGDEF domain N900_07420 PF00563 EAL domain N900_07420 PF00990 Diguanylate cyclase, GGDEF domain N900_07420 PF03707 Bacterial signalling protein N terminal repeat N900_07440 PF06508 Queuosine biosynthesis protein QueC N900_07445 PF04055 Radical SAM superfamily N900_07455 PF10414 Sirohaem synthase dimerisation region N900_07455 PF14824 Sirohaem biosynthesis protein central N900_07455 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N900_07460 PF00497 Bacterial extracellular solute-binding proteins, family 3 N900_07465 PF00528 Binding-protein-dependent transport system inner membrane component N900_07470 PF00528 Binding-protein-dependent transport system inner membrane component N900_07475 PF00005 ABC transporter N900_07480 PF01027 Inhibitor of apoptosis-promoting Bax1 N900_07485 PF04358 DsrC like protein N900_07490 PF00708 Acylphosphatase N900_07495 PF10672 S-adenosylmethionine-dependent methyltransferase N900_07495 PF17785 PUA-like domain N900_07500 PF00990 Diguanylate cyclase, GGDEF domain N900_07505 PF08534 Redoxin N900_07505 PF00462 Glutaredoxin N900_07510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_07510 PF00672 HAMP domain N900_07510 PF01627 Hpt domain N900_07510 PF00072 Response regulator receiver domain N900_07510 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) N900_07510 PF00512 His Kinase A (phospho-acceptor) domain N900_07515 PF00072 Response regulator receiver domain N900_07520 PF14497 Glutathione S-transferase, C-terminal domain N900_07520 PF02798 Glutathione S-transferase, N-terminal domain N900_07530 PF04209 homogentisate 1,2-dioxygenase N900_07535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N900_07545 PF07687 Peptidase dimerisation domain N900_07545 PF01546 Peptidase family M20/M25/M40 N900_07560 PF00501 AMP-binding enzyme N900_07560 PF16177 Acetyl-coenzyme A synthetase N-terminus N900_07560 PF13193 AMP-binding enzyme C-terminal domain N900_07565 PF04303 PrpF protein N900_07570 PF00694 Aconitase C-terminal domain N900_07570 PF00330 Aconitase family (aconitate hydratase) N900_07575 PF00285 Citrate synthase, C-terminal domain N900_07585 PF00392 Bacterial regulatory proteins, gntR family N900_07585 PF07729 FCD domain N900_07600 PF01970 Tripartite tricarboxylate transporter TctA family N900_07615 PF02653 Branched-chain amino acid transport system / permease component N900_07620 PF00005 ABC transporter N900_07625 PF13407 Periplasmic binding protein domain N900_07645 PF00072 Response regulator receiver domain N900_07645 PF00486 Transcriptional regulatory protein, C terminal N900_07650 PF00672 HAMP domain N900_07650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_07650 PF00512 His Kinase A (phospho-acceptor) domain N900_07655 PF06629 MltA-interacting protein MipA N900_07660 PF04393 Protein of unknown function (DUF535) N900_07665 PF00072 Response regulator receiver domain N900_07665 PF00158 Sigma-54 interaction domain N900_07665 PF02954 Bacterial regulatory protein, Fis family N900_07670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_07670 PF00512 His Kinase A (phospho-acceptor) domain N900_07670 PF00497 Bacterial extracellular solute-binding proteins, family 3 N900_07675 PF00939 Sodium:sulfate symporter transmembrane region N900_07680 PF00672 HAMP domain N900_07680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_07685 PF00842 Alanine racemase, C-terminal domain N900_07685 PF01168 Alanine racemase, N-terminal domain N900_07690 PF00892 EamA-like transporter family N900_07700 PF13302 Acetyltransferase (GNAT) domain N900_07705 PF00158 Sigma-54 interaction domain N900_07705 PF18024 Helix-turn-helix domain N900_07710 PF05128 Domain of unknown function (DUF697) N900_07715 PF04317 YcjX-like family, DUF463 N900_07730 PF04715 Anthranilate synthase component I, N terminal region N900_07730 PF00425 chorismate binding enzyme N900_07735 PF00293 NUDIX domain N900_07740 PF03222 Tryptophan/tyrosine permease family N900_07745 PF03313 Serine dehydratase alpha chain N900_07745 PF03315 Serine dehydratase beta chain N900_07750 PF01242 6-pyruvoyl tetrahydropterin synthase N900_07755 PF00672 HAMP domain N900_07755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_07760 PF01336 OB-fold nucleic acid binding domain N900_07760 PF00152 tRNA synthetases class II (D, K and N) N900_07765 PF08543 Phosphomethylpyrimidine kinase N900_07770 PF01966 HD domain N900_07770 PF00672 HAMP domain N900_07780 PF00155 Aminotransferase class I and II N900_07795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_07795 PF00672 HAMP domain N900_07795 PF17200 Single Cache domain 2 N900_07800 PF04349 Periplasmic glucan biosynthesis protein, MdoG N900_07805 PF13506 Glycosyl transferase family 21 N900_07810 PF00356 Bacterial regulatory proteins, lacI family N900_07815 PF04794 YdjC-like protein N900_07820 PF02056 Family 4 glycosyl hydrolase N900_07820 PF11975 Family 4 glycosyl hydrolase C-terminal domain N900_07825 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit N900_07830 PF02378 Phosphotransferase system, EIIC N900_07835 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N900_07840 PF01522 Polysaccharide deacetylase N900_07845 PF02028 BCCT, betaine/carnitine/choline family transporter N900_07850 PF01047 MarR family N900_07855 PF00196 Bacterial regulatory proteins, luxR family N900_07855 PF00072 Response regulator receiver domain N900_07860 PF07730 Histidine kinase N900_07860 PF17200 Single Cache domain 2 N900_07865 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component N900_07875 PF03480 Bacterial extracellular solute-binding protein, family 7 N900_07890 PF00753 Metallo-beta-lactamase superfamily N900_07895 PF05951 Bacterial protein of unknown function (DUF882) N900_07900 PF03734 L,D-transpeptidase catalytic domain N900_07900 PF01471 Putative peptidoglycan binding domain N900_07925 PF00925 GTP cyclohydrolase II N900_07935 PF07690 Major Facilitator Superfamily N900_07950 PF00521 DNA gyrase/topoisomerase IV, subunit A N900_07950 PF03989 DNA gyrase C-terminal domain, beta-propeller N900_07960 PF00317 Ribonucleotide reductase, all-alpha domain N900_07960 PF02867 Ribonucleotide reductase, barrel domain N900_07960 PF03477 ATP cone domain N900_07965 PF00268 Ribonucleotide reductase, small chain N900_07970 PF00111 2Fe-2S iron-sulfur cluster binding domain N900_07970 PF00970 Oxidoreductase FAD-binding domain N900_07970 PF00175 Oxidoreductase NAD-binding domain N900_07980 PF00994 Probable molybdopterin binding domain N900_07995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_07995 PF17200 Single Cache domain 2 N900_07995 PF00672 HAMP domain N900_08010 PF00005 ABC transporter N900_08015 PF01032 FecCD transport family N900_08020 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family N900_08030 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase N900_08035 PF02654 Cobalamin-5-phosphate synthase N900_08040 PF02277 Phosphoribosyltransferase N900_08050 PF01641 SelR domain N900_08060 PF08411 Exonuclease C-terminal N900_08060 PF00929 Exonuclease N900_08065 PF03788 LrgA family N900_08070 PF04172 LrgB-like family N900_08075 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N900_08075 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region N900_08085 PF02222 ATP-grasp domain N900_08090 PF05724 Thiopurine S-methyltransferase (TPMT) N900_08105 PF00216 Bacterial DNA-binding protein N900_08110 PF03147 Ferredoxin-fold anticodon binding domain N900_08110 PF03483 B3/4 domain N900_08110 PF03484 tRNA synthetase B5 domain N900_08110 PF01588 Putative tRNA binding domain N900_08110 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain N900_08115 PF01409 tRNA synthetases class II core domain (F) N900_08115 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain N900_08125 PF00072 Response regulator receiver domain N900_08125 PF00990 Diguanylate cyclase, GGDEF domain N900_08150 PF01066 CDP-alcohol phosphatidyltransferase N900_08155 PF02151 UvrB/uvrC motif N900_08155 PF01541 GIY-YIG catalytic domain N900_08155 PF08459 UvrC Helix-hairpin-helix N-terminal N900_08160 PF00196 Bacterial regulatory proteins, luxR family N900_08160 PF00072 Response regulator receiver domain N900_08165 PF00136 DNA polymerase family B N900_08165 PF03104 DNA polymerase family B, exonuclease domain N900_08170 PF13426 PAS domain N900_08170 PF00563 EAL domain N900_08170 PF00990 Diguanylate cyclase, GGDEF domain N900_08180 PF09285 Elongation factor P, C-terminal N900_08180 PF08207 Elongation factor P (EF-P) KOW-like domain N900_08180 PF01132 Elongation factor P (EF-P) OB domain N900_08185 PF04269 Protein of unknown function, DUF440 N900_08195 PF00392 Bacterial regulatory proteins, gntR family N900_08195 PF07702 UTRA domain N900_08200 PF01979 Amidohydrolase family N900_08205 PF00491 Arginase family N900_08210 PF17392 Urocanase C-terminal domain N900_08210 PF01175 Urocanase Rossmann-like domain N900_08210 PF17391 Urocanase N-terminal domain N900_08215 PF00221 Aromatic amino acid lyase N900_08225 PF00089 Trypsin N900_08230 PF04191 Phospholipid methyltransferase N900_08235 PF13183 4Fe-4S dicluster domain N900_08235 PF02913 FAD linked oxidases, C-terminal domain N900_08235 PF01565 FAD binding domain N900_08250 PF13488 Glycine zipper N900_08250 PF00691 OmpA family N900_08270 PF01259 SAICAR synthetase N900_08280 PF00390 Malic enzyme, N-terminal domain N900_08280 PF03949 Malic enzyme, NAD binding domain N900_08290 PF02698 DUF218 domain N900_08300 PF00266 Aminotransferase class-V N900_08310 PF07992 Pyridine nucleotide-disulphide oxidoreductase N900_08315 PF00005 ABC transporter N900_08315 PF00664 ABC transporter transmembrane region N900_08320 PF00005 ABC transporter N900_08320 PF00664 ABC transporter transmembrane region N900_08325 PF01479 S4 domain N900_08325 PF00849 RNA pseudouridylate synthase N900_08330 PF01300 Telomere recombination N900_08335 PF02811 PHP domain N900_08340 PF08056 Tryptophan operon leader peptide N900_08345 PF04715 Anthranilate synthase component I, N terminal region N900_08345 PF00425 chorismate binding enzyme N900_08350 PF00117 Glutamine amidotransferase class-I N900_08355 PF00591 Glycosyl transferase family, a/b domain N900_08355 PF02885 Glycosyl transferase family, helical bundle domain N900_08360 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase N900_08360 PF00218 Indole-3-glycerol phosphate synthase N900_08365 PF00291 Pyridoxal-phosphate dependent enzyme N900_08370 PF00290 Tryptophan synthase alpha chain N900_08375 PF00375 Sodium:dicarboxylate symporter family N900_08380 PF00265 Thymidine kinase N900_08385 PF00152 tRNA synthetases class II (D, K and N) N900_08385 PF02938 GAD domain N900_08385 PF01336 OB-fold nucleic acid binding domain N900_08390 PF01904 Protein of unknown function DUF72 N900_08395 PF13649 Methyltransferase domain N900_08400 PF08003 Protein of unknown function (DUF1698) N900_08405 PF18030 RimK PreATP-grasp domain N900_08405 PF08443 RimK-like ATP-grasp domain N900_08420 PF00266 Aminotransferase class-V N900_08430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_08430 PF00512 His Kinase A (phospho-acceptor) domain N900_08430 PF00989 PAS fold N900_08445 PF04994 TfoX C-terminal domain N900_08445 PF04993 TfoX N-terminal domain N900_08455 PF03956 Lysine exporter LysO N900_08465 PF00282 Pyridoxal-dependent decarboxylase conserved domain N900_08470 PF01380 SIS domain N900_08470 PF01418 Helix-turn-helix domain, rpiR family N900_08475 PF00465 Iron-containing alcohol dehydrogenase N900_08475 PF00171 Aldehyde dehydrogenase family N900_08480 PF00462 Glutaredoxin N900_08485 PF02080 TrkA-C domain N900_08485 PF06826 Predicted Permease Membrane Region N900_08490 PF10431 C-terminal, D2-small domain, of ClpB protein N900_08490 PF02861 Clp amino terminal domain, pathogenicity island component N900_08490 PF17871 AAA lid domain N900_08490 PF07724 AAA domain (Cdc48 subfamily) N900_08490 PF00004 ATPase family associated with various cellular activities (AAA) N900_08495 PF02617 ATP-dependent Clp protease adaptor protein ClpS N900_08500 PF00313 'Cold-shock' DNA-binding domain N900_08505 PF03971 Monomeric isocitrate dehydrogenase N900_08510 PF00849 RNA pseudouridylate synthase N900_08515 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase N900_08515 PF01502 Phosphoribosyl-AMP cyclohydrolase N900_08520 PF00977 Histidine biosynthesis protein N900_08525 PF00977 Histidine biosynthesis protein N900_08530 PF00117 Glutamine amidotransferase class-I N900_08535 PF00475 Imidazoleglycerol-phosphate dehydratase N900_08535 PF08645 Polynucleotide kinase 3 phosphatase N900_08540 PF00155 Aminotransferase class I and II N900_08545 PF00815 Histidinol dehydrogenase N900_08550 PF01634 ATP phosphoribosyltransferase N900_08550 PF08029 HisG, C-terminal domain N900_08555 PF03553 Na+/H+ antiporter family N900_08560 PF00816 H-NS histone family N900_08565 PF00294 pfkB family carbohydrate kinase N900_08575 PF04356 Protein of unknown function (DUF489) N900_08580 PF00206 Lyase N900_08580 PF08328 Adenylosuccinate lyase C-terminal N900_08590 PF16036 Chalcone isomerase-like N900_08615 PF00106 short chain dehydrogenase N900_08625 PF01435 Peptidase family M48 N900_08640 PF08241 Methyltransferase domain N900_08645 PF00155 Aminotransferase class I and II N900_08650 PF06968 Biotin and Thiamin Synthesis associated domain N900_08650 PF04055 Radical SAM superfamily N900_08655 PF00202 Aminotransferase class-III N900_08660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N900_08660 PF02403 Seryl-tRNA synthetase N-terminal domain N900_08665 PF00004 ATPase family associated with various cellular activities (AAA) N900_08665 PF12002 MgsA AAA+ ATPase C terminal N900_08665 PF16193 AAA C-terminal domain N900_08670 PF03548 Outer membrane lipoprotein carrier protein LolA N900_08675 PF01043 SecA preprotein cross-linking domain N900_08675 PF07517 SecA DEAD-like domain N900_08675 PF07516 SecA Wing and Scaffold domain N900_08675 PF02810 SEC-C motif N900_08680 PF01207 Dihydrouridine synthase (Dus) N900_08685 PF00990 Diguanylate cyclase, GGDEF domain N900_08690 PF00005 ABC transporter N900_08695 PF02653 Branched-chain amino acid transport system / permease component N900_08705 PF09905 DNA-binding protein VF530 N900_08710 PF04217 Protein of unknown function, DUF412 N900_08715 PF00871 Acetokinase family N900_08720 PF01515 Phosphate acetyl/butaryl transferase N900_08720 PF07085 DRTGG domain N900_08725 PF13409 Glutathione S-transferase, N-terminal domain N900_08730 PF00005 ABC transporter N900_08730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N900_08735 PF00005 ABC transporter N900_08735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N900_08740 PF00528 Binding-protein-dependent transport system inner membrane component N900_08740 PF12911 N-terminal TM domain of oligopeptide transport permease C N900_08745 PF00528 Binding-protein-dependent transport system inner membrane component N900_08750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N900_08760 PF00512 His Kinase A (phospho-acceptor) domain N900_08760 PF08448 PAS fold N900_08760 PF13188 PAS domain N900_08760 PF00072 Response regulator receiver domain N900_08760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_08765 PF00072 Response regulator receiver domain N900_08765 PF02954 Bacterial regulatory protein, Fis family N900_08765 PF00158 Sigma-54 interaction domain N900_08770 PF13188 PAS domain N900_08770 PF03707 Bacterial signalling protein N terminal repeat N900_08770 PF00990 Diguanylate cyclase, GGDEF domain N900_08770 PF00563 EAL domain N900_08775 PF00512 His Kinase A (phospho-acceptor) domain N900_08775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_08780 PF00989 PAS fold N900_08780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_08780 PF13188 PAS domain N900_08780 PF00512 His Kinase A (phospho-acceptor) domain N900_08780 PF13426 PAS domain N900_08790 PF00072 Response regulator receiver domain N900_08805 PF03481 Putative GTP-binding controlling metal-binding N900_08805 PF01300 Telomere recombination N900_08825 PF01161 Phosphatidylethanolamine-binding protein N900_08835 PF00704 Glycosyl hydrolases family 18 N900_08835 PF06483 Chitinase C N900_08850 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N900_08850 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N900_08855 PF01022 Bacterial regulatory protein, arsR family N900_08860 PF00990 Diguanylate cyclase, GGDEF domain N900_08860 PF08448 PAS fold N900_08870 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain N900_08885 PF01037 Lrp/AsnC ligand binding domain N900_08885 PF13404 AsnC-type helix-turn-helix domain N900_08890 PF00291 Pyridoxal-phosphate dependent enzyme N900_08895 PF08496 Peptidase family S49 N-terminal N900_08895 PF01343 Peptidase family S49 N900_08900 PF00106 short chain dehydrogenase N900_08905 PF03692 Putative zinc- or iron-chelating domain N900_08910 PF03692 Putative zinc- or iron-chelating domain N900_08915 PF13662 Toprim domain N900_08915 PF02132 RecR protein N900_08920 PF02575 YbaB/EbfC DNA-binding family N900_08925 PF12170 DNA polymerase III tau subunit V interacting with alpha N900_08925 PF12169 DNA polymerase III subunits gamma and tau domain III N900_08925 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding N900_08930 PF00156 Phosphoribosyl transferase domain N900_08945 PF00072 Response regulator receiver domain N900_08950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_08950 PF03466 LysR substrate binding domain N900_08955 PF00881 Nitroreductase family N900_08960 PF00378 Enoyl-CoA hydratase/isomerase N900_08960 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain N900_08960 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain N900_08965 PF00108 Thiolase, N-terminal domain N900_08965 PF02803 Thiolase, C-terminal domain N900_08980 PF08281 Sigma-70, region 4 N900_08980 PF04542 Sigma-70 region 2 N900_08990 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) N900_08995 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) N900_09000 PF01451 Low molecular weight phosphotyrosine protein phosphatase N900_09005 PF12557 Cob(I)alamin adenosyltransferase N terminal N900_09005 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP N900_09010 PF05170 AsmA family N900_09015 PF00485 Phosphoribulokinase / Uridine kinase family N900_09025 PF10609 NUBPL iron-transfer P-loop NTPase N900_09030 PF09334 tRNA synthetases class I (M) N900_09030 PF01588 Putative tRNA binding domain N900_09040 PF01048 Phosphorylase superfamily N900_09045 PF00403 Heavy-metal-associated domain N900_09050 PF03061 Thioesterase superfamily N900_09050 PF07085 DRTGG domain N900_09050 PF00571 CBS domain N900_09050 PF00392 Bacterial regulatory proteins, gntR family N900_09055 PF00990 Diguanylate cyclase, GGDEF domain N900_09055 PF07694 5TMR of 5TMR-LYT N900_09060 PF02391 MoaE protein N900_09065 PF02597 ThiS family N900_09070 PF01967 MoaC family N900_09075 PF00994 Probable molybdopterin binding domain N900_09080 PF04055 Radical SAM superfamily N900_09080 PF06463 Molybdenum Cofactor Synthesis C N900_09085 PF01933 Uncharacterised protein family UPF0052 N900_09090 PF01627 Hpt domain N900_09095 PF00072 Response regulator receiver domain N900_09095 PF00158 Sigma-54 interaction domain N900_09095 PF02954 Bacterial regulatory protein, Fis family N900_09105 PF02151 UvrB/uvrC motif N900_09105 PF04851 Type III restriction enzyme, res subunit N900_09105 PF12344 Ultra-violet resistance protein B N900_09105 PF17757 UvrB interaction domain N900_09105 PF00271 Helicase conserved C-terminal domain N900_09120 PF02508 Rnf-Nqr subunit, membrane protein N900_09125 PF04060 Putative Fe-S cluster N900_09135 PF03116 NQR2, RnfD, RnfE family N900_09140 PF04205 FMN-binding domain N900_09145 PF02508 Rnf-Nqr subunit, membrane protein N900_09150 PF00730 HhH-GPD superfamily base excision DNA repair protein N900_09150 PF00633 Helix-hairpin-helix motif N900_09150 PF10576 Iron-sulfur binding domain of endonuclease III N900_09155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N900_09160 PF10952 Protein of unknown function (DUF2753) N900_09165 PF18393 MotY N-terminal domain N900_09165 PF00691 OmpA family N900_09175 PF00929 Exonuclease N900_09180 PF13726 Na+-H+ antiporter family N900_09180 PF03553 Na+/H+ antiporter family N900_09185 PF00156 Phosphoribosyl transferase domain N900_09190 PF02674 Colicin V production protein N900_09195 PF05036 Sporulation related domain N900_09200 PF02875 Mur ligase family, glutamate ligase domain N900_09200 PF08245 Mur ligase middle domain N900_09205 PF17848 Acetyl-coA carboxylase zinc finger domain N900_09205 PF01039 Carboxyl transferase domain N900_09210 PF01416 tRNA pseudouridine synthase N900_09225 PF00749 tRNA synthetases class I (E and Q), catalytic domain N900_09225 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain N900_09230 PF02378 Phosphotransferase system, EIIC N900_09230 PF00367 phosphotransferase system, EIIB N900_09230 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 N900_09235 PF01979 Amidohydrolase family N900_09240 PF01047 MarR family N900_09240 PF00480 ROK family N900_09245 PF02254 TrkA-N domain N900_09245 PF00999 Sodium/hydrogen exchanger family N900_09250 PF13537 Glutamine amidotransferase domain N900_09250 PF00733 Asparagine synthase N900_09255 PF02357 Transcription termination factor nusG N900_09260 PF00854 POT family N900_09265 PF00762 Ferrochelatase N900_09270 PF05191 Adenylate kinase, active site lid N900_09275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_09275 PF00183 Hsp90 protein N900_09280 PF00486 Transcriptional regulatory protein, C terminal N900_09285 PF17323 Trans-membrane regulatory protein ToxS N900_09295 PF12850 Calcineurin-like phosphoesterase superfamily domain N900_09300 PF08338 Domain of unknown function (DUF1731) N900_09300 PF01370 NAD dependent epimerase/dehydratase family N900_09305 PF00106 short chain dehydrogenase N900_09315 PF00085 Thioredoxin N900_09320 PF16200 C-terminal region of band_7 N900_09320 PF01145 SPFH domain / Band 7 family N900_09325 PF01957 NfeD-like C-terminal, partner-binding N900_09330 PF13411 MerR HTH family regulatory protein N900_09340 PF13609 Gram-negative porin N900_09345 PF00533 BRCA1 C Terminus (BRCT) domain N900_09345 PF01653 NAD-dependent DNA ligase adenylation domain N900_09345 PF03120 NAD-dependent DNA ligase OB-fold domain N900_09345 PF12826 Helix-hairpin-helix motif N900_09345 PF03119 NAD-dependent DNA ligase C4 zinc finger domain N900_09350 PF04354 ZipA, C-terminal FtsZ-binding domain N900_09360 PF00291 Pyridoxal-phosphate dependent enzyme N900_09365 PF00381 PTS HPr component phosphorylation site N900_09370 PF05524 PEP-utilising enzyme, N-terminal N900_09370 PF00391 PEP-utilising enzyme, mobile domain N900_09370 PF02896 PEP-utilising enzyme, TIM barrel domain N900_09375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 N900_09380 PF01494 FAD binding domain N900_09385 PF01938 TRAM domain N900_09385 PF00919 Uncharacterized protein family UPF0004 N900_09385 PF04055 Radical SAM superfamily N900_09390 PF02562 PhoH-like protein N900_09395 PF02130 Uncharacterized protein family UPF0054 N900_09400 PF00571 CBS domain N900_09400 PF03471 Transporter associated domain N900_09405 PF00795 Carbon-nitrogen hydrolase N900_09410 PF07295 Zinc-ribbon containing domain N900_09415 PF00133 tRNA synthetases class I (I, L, M and V) N900_09415 PF13603 Leucyl-tRNA synthetase, Domain 2 N900_09415 PF08264 Anticodon-binding domain of tRNA N900_09420 PF04390 Lipopolysaccharide-assembly N900_09425 PF06144 DNA polymerase III, delta subunit N900_09425 PF14840 Processivity clamp loader gamma complex DNA pol III C-term N900_09435 PF02590 Predicted SPOUT methyltransferase N900_09440 PF03717 Penicillin-binding Protein dimerisation domain N900_09440 PF00905 Penicillin binding protein transpeptidase domain N900_09445 PF01098 Cell cycle protein N900_09450 PF05036 Sporulation related domain N900_09450 PF03330 Lytic transglycolase N900_09455 PF07943 Penicillin-binding protein 5, C-terminal domain N900_09455 PF00768 D-alanyl-D-alanine carboxypeptidase N900_09460 PF04359 Protein of unknown function (DUF493) N900_09465 PF03099 Biotin/lipoate A/B protein ligase family N900_09470 PF04055 Radical SAM superfamily N900_09470 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family N900_09480 PF00464 Serine hydroxymethyltransferase N900_09500 PF13807 G-rich domain on putative tyrosine kinase N900_09500 PF02706 Chain length determinant protein N900_09500 PF13614 AAA domain N900_09505 PF10531 SLBB domain N900_09505 PF18412 Outer-membrane lipoprotein Wza C-terminal domain N900_09505 PF02563 Polysaccharide biosynthesis/export protein N900_09515 PF02397 Bacterial sugar transferase N900_09530 PF17945 Beta/Gamma crystallin N900_09530 PF12561 ToxR activated gene A lipoprotein domain N900_09545 PF03808 Glycosyl transferase WecB/TagA/CpsF family N900_09555 PF00534 Glycosyl transferases group 1 N900_09555 PF00862 Sucrose synthase N900_09565 PF00132 Bacterial transferase hexapeptide (six repeats) N900_09585 PF12464 Maltose acetyltransferase N900_09585 PF14602 Hexapeptide repeat of succinyl-transferase N900_09590 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain N900_09590 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain N900_09590 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain N900_09595 PF02350 UDP-N-acetylglucosamine 2-epimerase N900_09600 PF01451 Low molecular weight phosphotyrosine protein phosphatase N900_09605 PF00873 AcrB/AcrD/AcrF family N900_09610 PF13533 Biotin-lipoyl like N900_09630 PF00128 Alpha amylase, catalytic domain N900_09630 PF16657 Maltogenic Amylase, C-terminal domain N900_09635 PF00367 phosphotransferase system, EIIB N900_09635 PF02378 Phosphotransferase system, EIIC N900_09640 PF00356 Bacterial regulatory proteins, lacI family N900_09650 PF00005 ABC transporter N900_09650 PF09383 NIL domain N900_09655 PF00528 Binding-protein-dependent transport system inner membrane component N900_09660 PF03180 NLPA lipoprotein N900_09665 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) N900_09670 PF07348 Syd protein (SUKH-2) N900_09675 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term N900_09675 PF14489 QueF-like protein N900_09685 PF00990 Diguanylate cyclase, GGDEF domain N900_09690 PF11892 Domain of unknown function (DUF3412) N900_09690 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases N900_09690 PF03641 Possible lysine decarboxylase N900_09695 PF01367 5'-3' exonuclease, C-terminal SAM fold N900_09695 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain N900_09700 PF04241 Protein of unknown function (DUF423) N900_09705 PF03466 LysR substrate binding domain N900_09705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_09715 PF02926 THUMP domain N900_09715 PF02568 Thiamine biosynthesis protein (ThiI) N900_09720 PF13677 Membrane MotB of proton-channel complex MotA/MotB N900_09720 PF00691 OmpA family N900_09725 PF01618 MotA/TolQ/ExbB proton channel family N900_09730 PF02609 Exonuclease VII small subunit N900_09735 PF00348 Polyprenyl synthetase N900_09740 PF13292 1-deoxy-D-xylulose-5-phosphate synthase N900_09740 PF02779 Transketolase, pyrimidine binding domain N900_09740 PF02780 Transketolase, C-terminal domain N900_09745 PF00849 RNA pseudouridylate synthase N900_09750 PF04287 tRNA pseudouridine synthase C N900_09765 PF13302 Acetyltransferase (GNAT) domain N900_09775 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 N900_09780 PF03806 AbgT putative transporter family N900_09785 PF00444 Ribosomal protein L36 N900_09790 PF01197 Ribosomal protein L31 N900_09795 PF01980 tRNA-methyltransferase O N900_09795 PF18389 TrmO C-terminal domain N900_09800 PF03129 Anticodon binding domain N900_09800 PF04073 Aminoacyl-tRNA editing domain N900_09800 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N900_09810 PF06786 Uncharacterised protein family (UPF0253) N900_09820 PF01797 Transposase IS200 like N900_09825 PF02769 AIR synthase related protein, C-terminal domain N900_09825 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain N900_09825 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal N900_09835 PF00497 Bacterial extracellular solute-binding proteins, family 3 N900_09835 PF01464 Transglycosylase SLT domain N900_09845 PF14437 MafB19-like deaminase N900_09850 PF03806 AbgT putative transporter family N900_09875 PF00114 Pilin (bacterial filament) N900_09875 PF07963 Prokaryotic N-terminal methylation motif N900_09880 PF00684 DnaJ central domain N900_09880 PF00226 DnaJ domain N900_09880 PF01556 DnaJ C terminal domain N900_09885 PF00012 Hsp70 protein N900_09890 PF01025 GrpE N900_09895 PF01513 ATP-NAD kinase N900_09900 PF02463 RecF/RecN/SMC N terminal domain N900_09905 PF04355 SmpA / OmlA family N900_09910 PF03658 RnfH family Ubiquitin N900_09915 PF03364 Polyketide cyclase / dehydrase and lipid transport N900_09920 PF01668 SmpB protein N900_09925 PF00589 Phage integrase family N900_09925 PF13356 Arm DNA-binding domain N900_09935 PF13402 Peptidase M60, enhancin and enhancin-like N900_09935 PF17291 N-terminal domain of M60-like peptidases N900_09935 PF13322 Domain of unknown function (DUF4092) N900_09945 PF04225 Opacity-associated protein A LysM-like domain N900_09945 PF01551 Peptidase family M23 N900_09965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_09965 PF00672 HAMP domain N900_09965 PF02743 Cache domain N900_09975 PF06750 Bacterial Peptidase A24 N-terminal domain N900_09975 PF01478 Type IV leader peptidase family N900_09985 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F N900_09990 PF00482 Type II secretion system (T2SS), protein F N900_09995 PF00437 Type II/IV secretion system protein N900_10000 PF17456 Toxin-coregulated pilus protein S N900_10020 PF10671 Toxin co-regulated pilus biosynthesis protein Q N900_10030 PF07963 Prokaryotic N-terminal methylation motif N900_10030 PF05946 Toxin-coregulated pilus subunit TcpA N900_10040 PF00486 Transcriptional regulatory protein, C terminal N900_10045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_10050 PF08534 Redoxin N900_10070 PF00171 Aldehyde dehydrogenase family N900_10075 PF13737 Transposase DDE domain N900_10080 PF13737 Transposase DDE domain N900_10135 PF00037 4Fe-4S binding domain N900_10135 PF11953 Domain of unknown function (DUF3470) N900_10140 PF00588 SpoU rRNA Methylase family N900_10140 PF08032 RNA 2'-O ribose methyltransferase substrate binding N900_10150 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase N900_10155 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase N900_10160 PF04223 Citrate lyase, alpha subunit (CitF) N900_10165 PF03328 HpcH/HpaI aldolase/citrate lyase family N900_10170 PF06857 Malonate decarboxylase delta subunit (MdcD) N900_10175 PF08218 Citrate lyase ligase C-terminal domain N900_10180 PF03390 2-hydroxycarboxylate transporter family N900_10185 PF04277 Oxaloacetate decarboxylase, gamma chain N900_10190 PF02436 Conserved carboxylase domain N900_10190 PF00682 HMGL-like N900_10190 PF00364 Biotin-requiring enzyme N900_10195 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit N900_10200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_10200 PF17203 Single cache domain 3 N900_10205 PF12431 Transcriptional regulator N900_10205 PF00072 Response regulator receiver domain N900_10220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_10220 PF03466 LysR substrate binding domain N900_10225 PF01266 FAD dependent oxidoreductase N900_10230 PF01235 Sodium:alanine symporter family N900_10235 PF14864 Alkyl sulfatase C-terminal N900_10235 PF14863 Alkyl sulfatase dimerisation N900_10235 PF00753 Metallo-beta-lactamase superfamily N900_10240 PF03466 LysR substrate binding domain N900_10240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_10245 PF17837 4'-phosphopantetheinyl transferase N-terminal domain N900_10245 PF01648 4'-phosphopantetheinyl transferase superfamily N900_10250 PF00005 ABC transporter N900_10255 PF01032 FecCD transport family N900_10260 PF01032 FecCD transport family N900_10265 PF01497 Periplasmic binding protein N900_10280 PF00425 chorismate binding enzyme N900_10285 PF00501 AMP-binding enzyme N900_10285 PF13193 AMP-binding enzyme C-terminal domain N900_10290 PF00857 Isochorismatase family N900_10290 PF00550 Phosphopantetheine attachment site N900_10295 PF01184 GPR1/FUN34/yaaH family N900_10300 PF00704 Glycosyl hydrolases family 18 N900_10300 PF06483 Chitinase C N900_10310 PF02540 NAD synthase N900_10310 PF00117 Glutamine amidotransferase class-I N900_10310 PF00958 GMP synthase C terminal domain N900_10315 PF00571 CBS domain N900_10315 PF00478 IMP dehydrogenase / GMP reductase domain N900_10320 PF13742 OB-fold nucleic acid binding domain N900_10320 PF02601 Exonuclease VII, large subunit N900_10335 PF01926 50S ribosome-binding GTPase N900_10335 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal N900_10340 PF13360 PQQ-like domain N900_10345 PF09976 Tetratricopeptide repeat-like domain N900_10350 PF13393 Histidyl-tRNA synthetase N900_10350 PF03129 Anticodon binding domain N900_10355 PF04551 GcpE protein N900_10360 PF13464 Domain of unknown function (DUF4115) N900_10365 PF04055 Radical SAM superfamily N900_10370 PF00334 Nucleoside diphosphate kinase N900_10375 PF00883 Cytosol aminopeptidase family, catalytic domain N900_10375 PF12404 Peptidase N900_10380 PF04384 Iron-sulphur cluster assembly N900_10385 PF00111 2Fe-2S iron-sulfur cluster binding domain N900_10390 PF00012 Hsp70 protein N900_10395 PF00226 DnaJ domain N900_10395 PF07743 HSCB C-terminal oligomerisation domain N900_10400 PF01521 Iron-sulphur cluster biosynthesis N900_10405 PF01592 NifU-like N terminal domain N900_10410 PF00266 Aminotransferase class-V N900_10415 PF02082 Transcriptional regulator N900_10420 PF00588 SpoU rRNA Methylase family N900_10425 PF00459 Inositol monophosphatase family N900_10430 PF02355 Protein export membrane protein N900_10430 PF07549 SecD/SecF GG Motif N900_10435 PF13721 SecD export protein N-terminal TM region N900_10435 PF07549 SecD/SecF GG Motif N900_10435 PF02355 Protein export membrane protein N900_10440 PF02699 Preprotein translocase subunit N900_10445 PF01702 Queuine tRNA-ribosyltransferase N900_10450 PF02547 Queuosine biosynthesis protein N900_10455 PF00571 CBS domain N900_10460 PF00463 Isocitrate lyase family N900_10465 PF01274 Malate synthase N900_10470 PF03466 LysR substrate binding domain N900_10470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_10475 PF10417 C-terminal domain of 1-Cys peroxiredoxin N900_10475 PF00578 AhpC/TSA family N900_10480 PF03932 CutC family N900_10485 PF03976 Polyphosphate kinase 2 (PPK2) N900_10490 PF01895 PhoU domain N900_10495 PF00005 ABC transporter N900_10500 PF00528 Binding-protein-dependent transport system inner membrane component N900_10505 PF00528 Binding-protein-dependent transport system inner membrane component N900_10510 PF13089 Polyphosphate kinase N-terminal domain N900_10510 PF13090 Polyphosphate kinase C-terminal domain 2 N900_10510 PF17941 Polyphosphate kinase C-terminal domain 1 N900_10510 PF02503 Polyphosphate kinase middle domain N900_10515 PF02541 Ppx/GppA phosphatase family N900_10520 PF12849 PBP superfamily domain N900_10525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_10525 PF00512 His Kinase A (phospho-acceptor) domain N900_10525 PF00989 PAS fold N900_10525 PF11808 Phosphate regulon sensor protein PhoR N900_10530 PF00072 Response regulator receiver domain N900_10530 PF00486 Transcriptional regulatory protein, C terminal N900_10535 PF04381 Putative exonuclease, RdgC N900_10545 PF00037 4Fe-4S binding domain N900_10550 PF00881 Nitroreductase family N900_10585 PF10431 C-terminal, D2-small domain, of ClpB protein N900_10585 PF17871 AAA lid domain N900_10585 PF07724 AAA domain (Cdc48 subfamily) N900_10585 PF02861 Clp amino terminal domain, pathogenicity island component N900_10585 PF00004 ATPase family associated with various cellular activities (AAA) N900_10595 PF00849 RNA pseudouridylate synthase N900_10595 PF01479 S4 domain N900_10600 PF13525 Outer membrane lipoprotein N900_10605 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein N900_10610 PF00800 Prephenate dehydratase N900_10610 PF01817 Chorismate mutase type II N900_10615 PF13416 Bacterial extracellular solute-binding protein N900_10620 PF00563 EAL domain N900_10620 PF00990 Diguanylate cyclase, GGDEF domain N900_10625 PF01931 Protein of unknown function DUF84 N900_10630 PF01371 Trp repressor protein N900_10635 PF14718 Soluble lytic murein transglycosylase L domain N900_10635 PF01464 Transglycosylase SLT domain N900_10640 PF00005 ABC transporter N900_10640 PF12848 ABC transporter N900_10645 PF07238 PilZ domain N900_10650 PF02153 Prephenate dehydrogenase N900_10650 PF01817 Chorismate mutase type II N900_10655 PF00793 DAHP synthetase I family N900_10660 PF07694 5TMR of 5TMR-LYT N900_10660 PF06580 Histidine kinase N900_10665 PF04397 LytTr DNA-binding domain N900_10665 PF00072 Response regulator receiver domain N900_10670 PF00933 Glycosyl hydrolase family 3 N terminal domain N900_10675 PF03702 Anhydro-N-acetylmuramic acid kinase N900_10680 PF13580 SIS domain N900_10695 PF02554 Carbon starvation protein CstA N900_10700 PF02401 LytB protein N900_10705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N900_10710 PF01252 Signal peptidase (SPase) II N900_10715 PF06827 Zinc finger found in FPG and IleRS N900_10715 PF00133 tRNA synthetases class I (I, L, M and V) N900_10715 PF08264 Anticodon-binding domain of tRNA N900_10720 PF06574 FAD synthetase N900_10720 PF01687 Riboflavin kinase N900_10725 PF03023 Lipid II flippase MurJ N900_10730 PF01649 Ribosomal protein S20 N900_10735 PF01022 Bacterial regulatory protein, arsR family N900_10740 PF03466 LysR substrate binding domain N900_10740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_10745 PF02690 Na+/Pi-cotransporter N900_10750 PF00303 Thymidylate synthase N900_10755 PF01790 Prolipoprotein diacylglyceryl transferase N900_10760 PF01925 Sulfite exporter TauE/SafE N900_10765 PF02896 PEP-utilising enzyme, TIM barrel domain N900_10765 PF00391 PEP-utilising enzyme, mobile domain N900_10765 PF05524 PEP-utilising enzyme, N-terminal N900_10765 PF01590 GAF domain N900_10770 PF00293 NUDIX domain N900_10780 PF02976 DNA mismatch repair enzyme MutH N900_10785 PF00248 Aldo/keto reductase family N900_10795 PF02954 Bacterial regulatory protein, Fis family N900_10795 PF00158 Sigma-54 interaction domain N900_10795 PF00072 Response regulator receiver domain N900_10800 PF01336 OB-fold nucleic acid binding domain N900_10800 PF00152 tRNA synthetases class II (D, K and N) N900_10810 PF05525 Branched-chain amino acid transport protein N900_10815 PF05175 Methyltransferase small domain N900_10820 PF00271 Helicase conserved C-terminal domain N900_10820 PF00270 DEAD/DEAH box helicase N900_10825 PF00009 Elongation factor Tu GTP binding domain N900_10825 PF03144 Elongation factor Tu domain 2 N900_10825 PF16658 Class II release factor RF3, C-terminal domain N900_10830 PF01381 Helix-turn-helix N900_10830 PF00717 Peptidase S24-like N900_10875 PF06122 Conjugative relaxosome accessory transposon protein N900_10885 PF13495 Phage integrase, N-terminal SAM-like domain N900_10885 PF00589 Phage integrase family N900_10890 PF00186 Dihydrofolate reductase N900_10910 PF12833 Helix-turn-helix domain N900_10935 PF04002 RadC-like JAB domain N900_10940 PF00092 von Willebrand factor type A domain N900_10960 PF07728 AAA domain (dynein-related subfamily) N900_10980 PF00436 Single-strand binding protein family N900_10995 PF04231 Endonuclease I N900_11005 PF00665 Integrase core domain N900_11010 PF01695 IstB-like ATP binding protein N900_11020 PF06986 Type-1V conjugative transfer system mating pair stabilisation N900_11025 PF06834 TraU protein N900_11035 PF10502 Signal peptidase, peptidase S26 N900_11050 PF10411 Disulfide bond isomerase protein N-terminus N900_11050 PF13098 Thioredoxin-like domain N900_11175 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N900_11175 PF00929 Exonuclease N900_11175 PF14579 Helix-hairpin-helix motif N900_11175 PF02811 PHP domain N900_11175 PF07733 Bacterial DNA polymerase III alpha NTPase domain N900_11175 PF11490 DNA polymerase III polC-type N-terminus II N900_11185 PF00717 Peptidase S24-like N900_11190 PF00817 impB/mucB/samB family N900_11190 PF11799 impB/mucB/samB family C-terminal domain N900_11190 PF13438 Domain of unknown function (DUF4113) N900_11200 PF00872 Transposase, Mutator family N900_11205 PF00872 Transposase, Mutator family N900_11215 PF00809 Pterin binding enzyme N900_11220 PF01636 Phosphotransferase enzyme family N900_11225 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase N900_11235 PF03466 LysR substrate binding domain N900_11235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_11240 PF07690 Major Facilitator Superfamily N900_11265 PF13700 Domain of unknown function (DUF4158) N900_11265 PF01526 Tn3 transposase DDE domain N900_11270 PF11799 impB/mucB/samB family C-terminal domain N900_11270 PF00817 impB/mucB/samB family N900_11270 PF13438 Domain of unknown function (DUF4113) N900_11305 PF00990 Diguanylate cyclase, GGDEF domain N900_11305 PF03707 Bacterial signalling protein N terminal repeat N900_11305 PF00563 EAL domain N900_11320 PF13508 Acetyltransferase (GNAT) domain N900_11330 PF03707 Bacterial signalling protein N terminal repeat N900_11330 PF00990 Diguanylate cyclase, GGDEF domain N900_11330 PF00563 EAL domain N900_11355 PF13181 Tetratricopeptide repeat N900_11355 PF07719 Tetratricopeptide repeat N900_11360 PF00013 KH domain N900_11360 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain N900_11360 PF01138 3' exoribonuclease family, domain 1 N900_11360 PF03725 3' exoribonuclease family, domain 2 N900_11360 PF00575 S1 RNA binding domain N900_11365 PF00312 Ribosomal protein S15 N900_11370 PF16198 tRNA pseudouridylate synthase B C-terminal domain N900_11370 PF09157 Pseudouridine synthase II TruB, C-terminal N900_11370 PF01509 TruB family pseudouridylate synthase (N terminal domain) N900_11375 PF02033 Ribosome-binding factor A N900_11380 PF04760 Translation initiation factor IF-2, N-terminal region N900_11380 PF08364 Bacterial translation initiation factor IF-2 associated region N900_11380 PF11987 Translation-initiation factor 2 N900_11380 PF00009 Elongation factor Tu GTP binding domain N900_11385 PF00575 S1 RNA binding domain N900_11385 PF08529 NusA N-terminal domain N900_11385 PF13184 NusA-like KH domain N900_11390 PF17384 RimP C-terminal SH3 domain N900_11390 PF02576 RimP N-terminal domain N900_11405 PF03840 Preprotein translocase SecG subunit N900_11410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N900_11410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N900_11410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N900_11410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N900_11415 PF00809 Pterin binding enzyme N900_11420 PF01434 Peptidase family M41 N900_11420 PF06480 FtsH Extracellular N900_11420 PF17862 AAA+ lid domain N900_11420 PF00004 ATPase family associated with various cellular activities (AAA) N900_11425 PF01728 FtsJ-like methyltransferase N900_11430 PF01985 CRS1 / YhbY (CRM) domain N900_11435 PF03449 Transcription elongation factor, N-terminal N900_11435 PF01272 Transcription elongation factor, GreA/GreB, C-term N900_11440 PF13609 Gram-negative porin N900_11445 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family N900_11450 PF00579 tRNA synthetases class I (W and Y) N900_11450 PF01479 S4 domain N900_11455 PF01551 Peptidase family M23 N900_11455 PF04225 Opacity-associated protein A LysM-like domain N900_11460 PF00873 AcrB/AcrD/AcrF family N900_11470 PF01521 Iron-sulphur cluster biosynthesis N900_11480 PF00202 Aminotransferase class-III N900_11485 PF01594 AI-2E family transporter N900_11490 PF05175 Methyltransferase small domain N900_11490 PF08468 Methyltransferase small domain N-terminal N900_11495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_11495 PF00512 His Kinase A (phospho-acceptor) domain N900_11495 PF00072 Response regulator receiver domain N900_11495 PF09308 LuxQ, periplasmic N900_11500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N900_11505 PF00528 Binding-protein-dependent transport system inner membrane component N900_11510 PF12911 N-terminal TM domain of oligopeptide transport permease C N900_11510 PF00528 Binding-protein-dependent transport system inner membrane component N900_11515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N900_11515 PF00005 ABC transporter N900_11520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N900_11520 PF00005 ABC transporter N900_11530 PF01869 BadF/BadG/BcrA/BcrD ATPase family N900_11535 PF00728 Glycosyl hydrolase family 20, catalytic domain N900_11535 PF02838 Glycosyl hydrolase family 20, domain 2 N900_11540 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain N900_11540 PF06165 Glycosyltransferase family 36 N900_11545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N900_11545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N900_11545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N900_11545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N900_11550 PF08402 TOBE domain N900_11550 PF00005 ABC transporter N900_11560 PF13416 Bacterial extracellular solute-binding protein N900_11565 PF00909 Ammonium Transporter Family N900_11570 PF00543 Nitrogen regulatory protein P-II N900_11575 PF06062 Uncharacterised protein family (UPF0231) N900_11580 PF00330 Aconitase family (aconitate hydratase) N900_11580 PF11791 Aconitate B N-terminal domain N900_11580 PF06434 Aconitate hydratase 2 N-terminus N900_11585 PF01734 Patatin-like phospholipase N900_11590 PF00905 Penicillin binding protein transpeptidase domain N900_11590 PF14814 Bifunctional transglycosylase second domain N900_11590 PF00912 Transglycosylase N900_11595 PF00271 Helicase conserved C-terminal domain N900_11595 PF08482 ATP-dependent helicase C-terminal N900_11595 PF00270 DEAD/DEAH box helicase N900_11595 PF04408 Helicase associated domain (HA2) N900_11605 PF17746 SfsA N-terminal OB domain N900_11605 PF03749 Sugar fermentation stimulation protein RE domain N900_11610 PF01258 Prokaryotic dksA/traR C4-type zinc finger N900_11615 PF00749 tRNA synthetases class I (E and Q), catalytic domain N900_11620 PF01743 Poly A polymerase head domain N900_11620 PF12626 Polymerase A arginine-rich C-terminus N900_11620 PF12627 Probable RNA and SrmB- binding site of polymerase A N900_11625 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) N900_11630 PF02548 Ketopantoate hydroxymethyltransferase N900_11635 PF02569 Pantoate-beta-alanine ligase N900_11640 PF01061 ABC-2 type transporter N900_11645 PF00005 ABC transporter N900_11655 PF01740 STAS domain N900_11655 PF00916 Sulfate permease family N900_11660 PF00484 Carbonic anhydrase N900_11665 PF00156 Phosphoribosyl transferase domain N900_11670 PF00440 Bacterial regulatory proteins, tetR family N900_11675 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N900_11680 PF04348 LppC putative lipoprotein N900_11685 PF02021 Uncharacterised protein family UPF0102 N900_11690 PF13580 SIS domain N900_11695 PF04972 BON domain N900_11700 PF04386 Stringent starvation protein B N900_11705 PF02798 Glutathione S-transferase, N-terminal domain N900_11705 PF00043 Glutathione S-transferase, C-terminal domain N900_11710 PF02167 Cytochrome C1 family N900_11715 PF00033 Cytochrome b/b6/petB N900_11715 PF00032 Cytochrome b(C-terminal)/b6/petD N900_11720 PF00355 Rieske [2Fe-2S] domain N900_11720 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal N900_11725 PF00380 Ribosomal protein S9/S16 N900_11730 PF00572 Ribosomal protein L13 N900_11735 PF03969 AFG1-like ATPase N900_11745 PF00595 PDZ domain N900_11750 PF13180 PDZ domain N900_11755 PF01245 Ribosomal protein L19 N900_11760 PF01746 tRNA (Guanine-1)-methyltransferase N900_11765 PF01782 RimM N-terminal domain N900_11765 PF05239 PRC-barrel domain N900_11770 PF00886 Ribosomal protein S16 N900_11775 PF00448 SRP54-type protein, GTPase domain N900_11775 PF02978 Signal peptide binding domain N900_11775 PF02881 SRP54-type protein, helical bundle domain N900_11780 PF01578 Cytochrome C assembly protein N900_11785 PF01595 Cyclin M transmembrane N-terminal domain N900_11785 PF03471 Transporter associated domain N900_11785 PF00571 CBS domain N900_11790 PF02664 S-Ribosylhomocysteinase (LuxS) N900_11795 PF04262 Glutamate-cysteine ligase N900_11800 PF05193 Peptidase M16 inactive domain N900_11800 PF00675 Insulinase (Peptidase family M16) N900_11805 PF09335 SNARE associated Golgi protein N900_11815 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit N900_11820 PF02436 Conserved carboxylase domain N900_11820 PF00682 HMGL-like N900_11820 PF00364 Biotin-requiring enzyme N900_11825 PF04277 Oxaloacetate decarboxylase, gamma chain N900_11875 PF02599 Global regulator protein family N900_11880 PF13840 ACT domain N900_11880 PF00696 Amino acid kinase family N900_11880 PF01842 ACT domain N900_11885 PF01411 tRNA synthetases class II (A) N900_11885 PF02272 DHHA1 domain N900_11885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N900_11890 PF02631 RecX family N900_11895 PF00154 recA bacterial DNA recombination protein N900_11900 PF02464 Competence-damaged protein N900_11905 PF00005 ABC transporter N900_11905 PF12857 TOBE-like domain N900_11910 PF00528 Binding-protein-dependent transport system inner membrane component N900_11915 PF00528 Binding-protein-dependent transport system inner membrane component N900_11925 PF00291 Pyridoxal-phosphate dependent enzyme N900_11930 PF00488 MutS domain V N900_11930 PF05190 MutS family domain IV N900_11930 PF01624 MutS domain I N900_11930 PF05188 MutS domain II N900_11930 PF05192 MutS domain III N900_11935 PF00140 Sigma-70 factor, region 1.2 N900_11935 PF04542 Sigma-70 region 2 N900_11935 PF04539 Sigma-70 region 3 N900_11935 PF04545 Sigma-70, region 4 N900_11940 PF01551 Peptidase family M23 N900_11940 PF01476 LysM domain N900_11950 PF01975 Survival protein SurE N900_11955 PF01142 tRNA pseudouridine synthase D (TruD) N900_11960 PF02542 YgbB family N900_11965 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase N900_11970 PF04977 Septum formation initiator N900_11975 PF02673 Bacitracin resistance protein BacA N900_11980 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) N900_11985 PF02152 Dihydroneopterin aldolase N900_11990 PF02660 Glycerol-3-phosphate acyltransferase N900_11995 PF00561 alpha/beta hydrolase fold N900_12000 PF00814 Glycoprotease family N900_12005 PF01165 Ribosomal protein S21 N900_12010 PF09424 Yqey-like protein N900_12015 PF08278 DNA primase DnaG DnaB-binding N900_12015 PF08275 DNA primase catalytic core, N-terminal domain N900_12015 PF01807 CHC2 zinc finger N900_12015 PF10410 DnaB-helicase binding domain of primase N900_12020 PF04542 Sigma-70 region 2 N900_12020 PF04539 Sigma-70 region 3 N900_12020 PF03979 Sigma-70 factor, region 1.1 N900_12020 PF04546 Sigma-70, non-essential region N900_12020 PF00140 Sigma-70 factor, region 1.2 N900_12020 PF04545 Sigma-70, region 4 N900_12030 PF00589 Phage integrase family N900_12030 PF13356 Arm DNA-binding domain N900_12035 PF08668 HDOD domain N900_12035 PF00563 EAL domain N900_12040 PF02743 Cache domain N900_12040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_12040 PF00672 HAMP domain N900_12050 PF01527 Transposase N900_12055 PF00665 Integrase core domain N900_12095 PF03480 Bacterial extracellular solute-binding protein, family 7 N900_12100 PF01380 SIS domain N900_12105 PF00455 DeoR C terminal sensor domain N900_12105 PF08220 DeoR-like helix-turn-helix domain N900_12110 PF00224 Pyruvate kinase, barrel domain N900_12110 PF02887 Pyruvate kinase, alpha/beta domain N900_12115 PF04402 Protein of unknown function (DUF541) N900_12120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_12120 PF03466 LysR substrate binding domain N900_12125 PF01810 LysE type translocator N900_12130 PF00924 Mechanosensitive ion channel N900_12130 PF05552 Conserved TM helix N900_12140 PF01116 Fructose-bisphosphate aldolase class-II N900_12150 PF00162 Phosphoglycerate kinase N900_12155 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N900_12155 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N900_12160 PF07715 TonB-dependent Receptor Plug Domain N900_12160 PF00593 TonB dependent receptor N900_12165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_12165 PF03466 LysR substrate binding domain N900_12180 PF02772 S-adenosylmethionine synthetase, central domain N900_12180 PF00438 S-adenosylmethionine synthetase, N-terminal domain N900_12180 PF02773 S-adenosylmethionine synthetase, C-terminal domain N900_12185 PF10263 SprT-like family N900_12185 PF17283 SprT-like zinc ribbon domain N900_12190 PF04231 Endonuclease I N900_12195 PF04452 RNA methyltransferase N900_12200 PF02951 Prokaryotic glutathione synthetase, N-terminal domain N900_12200 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain N900_12205 PF02622 Uncharacterized ACR, COG1678 N900_12210 PF03652 Holliday junction resolvase N900_12215 PF01479 S4 domain N900_12215 PF00579 tRNA synthetases class I (W and Y) N900_12225 PF00437 Type II/IV secretion system protein N900_12230 PF00437 Type II/IV secretion system protein N900_12235 PF01168 Alanine racemase, N-terminal domain N900_12240 PF14748 Pyrroline-5-carboxylate reductase dimerisation N900_12240 PF03807 NADP oxidoreductase coenzyme F420-dependent N900_12245 PF02325 YGGT family N900_12250 PF02594 Uncharacterised ACR, YggU family COG1872 N900_12260 PF01725 Ham1 family N900_12265 PF04055 Radical SAM superfamily N900_12265 PF06969 HemN C-terminal domain N900_12270 PF04960 Glutaminase N900_12275 PF02390 Putative methyltransferase N900_12280 PF10576 Iron-sulfur binding domain of endonuclease III N900_12280 PF00633 Helix-hairpin-helix motif N900_12280 PF00730 HhH-GPD superfamily base excision DNA repair protein N900_12280 PF14815 NUDIX domain N900_12285 PF04362 Bacterial Fe(2+) trafficking N900_12290 PF01464 Transglycosylase SLT domain N900_12290 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain N900_12315 PF12729 Four helix bundle sensory module for signal transduction N900_12315 PF00672 HAMP domain N900_12315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_12335 PF00226 DnaJ domain N900_12335 PF05099 Tellurite resistance protein TerB N900_12340 PF04453 LPS transport system D N900_12340 PF03968 OstA-like protein N900_12345 PF09312 SurA N-terminal domain N900_12350 PF04166 Pyridoxal phosphate biosynthetic protein PdxA N900_12355 PF00398 Ribosomal RNA adenine dimethylase N900_12360 PF04379 ApaG domain N900_12365 PF00149 Calcineurin-like phosphoesterase N900_12370 PF00186 Dihydrofolate reductase N900_12375 PF12821 Threonine/Serine exporter, ThrE N900_12380 PF06738 Putative threonine/serine exporter N900_12385 PF01926 50S ribosome-binding GTPase N900_12385 PF01018 GTP1/OBG N900_12390 PF01016 Ribosomal L27 protein N900_12395 PF00829 Ribosomal prokaryotic L21 protein N900_12400 PF00348 Polyprenyl synthetase N900_12410 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain N900_12410 PF00056 lactate/malate dehydrogenase, NAD binding domain N900_12415 PF02863 Arginine repressor, C-terminal domain N900_12415 PF01316 Arginine repressor, DNA binding domain N900_12420 PF16868 NMT1-like family N900_12430 PF00582 Universal stress protein family N900_12445 PF06877 Regulator of ribonuclease activity B N900_12455 PF01523 Putative modulator of DNA gyrase N900_12460 PF00795 Carbon-nitrogen hydrolase N900_12465 PF13116 Protein of unknown function N900_12465 PF13502 AsmA-like C-terminal region N900_12470 PF00575 S1 RNA binding domain N900_12470 PF10150 Ribonuclease E/G family N900_12475 PF02545 Maf-like protein N900_12480 PF04093 rod shape-determining protein MreD N900_12485 PF04085 rod shape-determining protein MreC N900_12520 PF07963 Prokaryotic N-terminal methylation motif N900_12520 PF00114 Pilin (bacterial filament) N900_12525 PF07963 Prokaryotic N-terminal methylation motif N900_12525 PF00114 Pilin (bacterial filament) N900_12535 PF00482 Type II secretion system (T2SS), protein F N900_12540 PF00437 Type II/IV secretion system protein N900_12550 PF01471 Putative peptidoglycan binding domain N900_12550 PF13401 AAA domain N900_12555 PF11741 AMIN domain N900_12555 PF00263 Bacterial type II and III secretion system protein N900_12555 PF03958 Bacterial type II/III secretion system short domain N900_12555 PF07660 Secretin and TonB N terminus short domain N900_12575 PF00990 Diguanylate cyclase, GGDEF domain N900_12575 PF17157 Gammaproteobacterial periplasmic sensor domain N900_12575 PF00563 EAL domain N900_12580 PF00436 Single-strand binding protein family N900_12585 PF00196 Bacterial regulatory proteins, luxR family N900_12590 PF00483 Nucleotidyl transferase N900_12595 PF00005 ABC transporter N900_12595 PF17755 UvrA DNA-binding domain N900_12595 PF17760 UvrA interaction domain N900_12605 PF00266 Aminotransferase class-V N900_12610 PF01842 ACT domain N900_12610 PF00696 Amino acid kinase family N900_12615 PF02574 Homocysteine S-methyltransferase N900_12615 PF02310 B12 binding domain N900_12615 PF00809 Pterin binding enzyme N900_12615 PF02965 Vitamin B12 dependent methionine synthase, activation domain N900_12615 PF02607 B12 binding domain N900_12620 PF00999 Sodium/hydrogen exchanger family N900_12655 PF01507 Phosphoadenosine phosphosulfate reductase family N900_12660 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain N900_12660 PF01077 Nitrite and sulphite reductase 4Fe-4S domain N900_12665 PF00667 FAD binding domain N900_12665 PF00258 Flavodoxin N900_12665 PF00175 Oxidoreductase NAD-binding domain N900_12680 PF09583 Phage shock protein G (Phageshock_PspG) N900_12685 PF01207 Dihydrouridine synthase (Dus) N900_12690 PF01475 Ferric uptake regulator family N900_12700 PF12706 Beta-lactamase superfamily domain N900_12705 PF00342 Phosphoglucose isomerase N900_12710 PF01894 Uncharacterised protein family UPF0047 N900_12715 PF01168 Alanine racemase, N-terminal domain N900_12715 PF00842 Alanine racemase, C-terminal domain N900_12720 PF03796 DnaB-like helicase C terminal domain N900_12720 PF00772 DnaB-like helicase N terminal domain N900_12730 PF01281 Ribosomal protein L9, N-terminal domain N900_12730 PF03948 Ribosomal protein L9, C-terminal domain N900_12735 PF01084 Ribosomal protein S18 N900_12740 PF00436 Single-strand binding protein family N900_12745 PF01250 Ribosomal protein S6 N900_12750 PF00210 Ferritin-like domain N900_12755 PF04324 BFD-like [2Fe-2S] binding domain N900_12760 PF00009 Elongation factor Tu GTP binding domain N900_12760 PF03144 Elongation factor Tu domain 2 N900_12760 PF03143 Elongation factor Tu C-terminal domain N900_12765 PF14492 Elongation Factor G, domain II N900_12765 PF03764 Elongation factor G, domain IV N900_12765 PF00009 Elongation factor Tu GTP binding domain N900_12765 PF03144 Elongation factor Tu domain 2 N900_12765 PF00679 Elongation factor G C-terminus N900_12770 PF00177 Ribosomal protein S7p/S5e N900_12775 PF00164 Ribosomal protein S12/S23 N900_12785 PF02635 DsrE/DsrF-like family N900_12790 PF02635 DsrE/DsrF-like family N900_12795 PF13309 HTH domain N900_12795 PF08348 YheO-like PAS domain N900_12800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N900_12800 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase N900_12810 PF04102 SlyX N900_12815 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) N900_12820 PF01145 SPFH domain / Band 7 family N900_12825 PF01145 SPFH domain / Band 7 family N900_12825 PF12221 Bacterial membrane protein N terminal N900_12830 PF16360 GTP-binding GTPase Middle Region N900_12830 PF13167 GTP-binding GTPase N-terminal N900_12830 PF01926 50S ribosome-binding GTPase N900_12835 PF17209 Hfq protein N900_12845 PF08676 MutL C terminal dimerisation domain N900_12845 PF01119 DNA mismatch repair protein, C-terminal domain N900_12850 PF01520 N-acetylmuramoyl-L-alanine amidase N900_12855 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE N900_12860 PF08331 Domain of unknown function (DUF1730) N900_12910 PF00929 Exonuclease N900_12915 PF03193 RsgA GTPase N900_12920 PF02666 Phosphatidylserine decarboxylase N900_12925 PF00939 Sodium:sulfate symporter transmembrane region N900_12935 PF01676 Metalloenzyme superfamily N900_12935 PF06415 BPG-independent PGAM N-terminus (iPGM_N) N900_12940 PF01551 Peptidase family M23 N900_12950 PF08360 QacR-like protein, C-terminal region N900_12950 PF00440 Bacterial regulatory proteins, tetR family N900_12955 PF01208 Uroporphyrinogen decarboxylase (URO-D) N900_12960 PF00293 NUDIX domain N900_12960 PF09297 NADH pyrophosphatase zinc ribbon domain N900_12965 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ N900_12970 PF04983 RNA polymerase Rpb1, domain 3 N900_12970 PF05000 RNA polymerase Rpb1, domain 4 N900_12970 PF04997 RNA polymerase Rpb1, domain 1 N900_12970 PF04998 RNA polymerase Rpb1, domain 5 N900_12970 PF00623 RNA polymerase Rpb1, domain 2 N900_12975 PF04561 RNA polymerase Rpb2, domain 2 N900_12975 PF04565 RNA polymerase Rpb2, domain 3 N900_12975 PF00562 RNA polymerase Rpb2, domain 6 N900_12975 PF04560 RNA polymerase Rpb2, domain 7 N900_12975 PF10385 RNA polymerase beta subunit external 1 domain N900_12975 PF04563 RNA polymerase beta subunit N900_12980 PF16320 Ribosomal protein L7/L12 dimerisation domain N900_12980 PF00542 Ribosomal protein L7/L12 C-terminal domain N900_12985 PF00466 Ribosomal protein L10 N900_12990 PF00687 Ribosomal protein L1p/L10e family N900_12995 PF03946 Ribosomal protein L11, N-terminal domain N900_12995 PF00298 Ribosomal protein L11, RNA binding domain N900_13000 PF02357 Transcription termination factor nusG N900_13000 PF00467 KOW motif N900_13005 PF00584 SecE/Sec61-gamma subunits of protein translocation complex N900_13010 PF00009 Elongation factor Tu GTP binding domain N900_13010 PF03143 Elongation factor Tu C-terminal domain N900_13010 PF03144 Elongation factor Tu domain 2 N900_13035 PF00485 Phosphoribulokinase / Uridine kinase family N900_13040 PF08279 HTH domain N900_13040 PF03099 Biotin/lipoate A/B protein ligase family N900_13040 PF02237 Biotin protein ligase C terminal domain N900_13045 PF01565 FAD binding domain N900_13045 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain N900_13055 PF13091 PLD-like domain N900_13090 PF00175 Oxidoreductase NAD-binding domain N900_13095 PF00970 Oxidoreductase FAD-binding domain N900_13095 PF00111 2Fe-2S iron-sulfur cluster binding domain N900_13095 PF00175 Oxidoreductase NAD-binding domain N900_13100 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase N900_13110 PF07497 Rho termination factor, RNA-binding domain N900_13110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N900_13110 PF07498 Rho termination factor, N-terminal domain N900_13115 PF00085 Thioredoxin N900_13120 PF00271 Helicase conserved C-terminal domain N900_13120 PF00270 DEAD/DEAH box helicase N900_13125 PF02541 Ppx/GppA phosphatase family N900_13130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_13130 PF00512 His Kinase A (phospho-acceptor) domain N900_13130 PF09456 RcsC Alpha-Beta-Loop (ABL) N900_13130 PF00072 Response regulator receiver domain N900_13135 PF12832 MFS_1 like family N900_13150 PF00501 AMP-binding enzyme N900_13150 PF13193 AMP-binding enzyme C-terminal domain N900_13150 PF16177 Acetyl-coenzyme A synthetase N-terminus N900_13155 PF01220 Dehydroquinase class II N900_13160 PF00364 Biotin-requiring enzyme N900_13165 PF02785 Biotin carboxylase C-terminal domain N900_13165 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N900_13165 PF00289 Biotin carboxylase, N-terminal domain N900_13175 PF01207 Dihydrouridine synthase (Dus) N900_13180 PF02954 Bacterial regulatory protein, Fis family N900_13185 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family N900_13185 PF00356 Bacterial regulatory proteins, lacI family N900_13190 PF00920 Dehydratase family N900_13195 PF01202 Shikimate kinase N900_13200 PF02447 GntP family permease N900_13205 PF01081 KDPG and KHG aldolase N900_13210 PF00593 TonB dependent receptor N900_13210 PF07715 TonB-dependent Receptor Plug Domain N900_13225 PF17200 Single Cache domain 2 N900_13225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_13225 PF00672 HAMP domain N900_13230 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain N900_13230 PF01276 Orn/Lys/Arg decarboxylase, major domain N900_13230 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain N900_13235 PF13520 Amino acid permease N900_13240 PF00486 Transcriptional regulatory protein, C terminal N900_13240 PF18500 CadC C-terminal domain 1 N900_13245 PF13411 MerR HTH family regulatory protein N900_13250 PF02142 MGS-like domain N900_13250 PF01808 AICARFT/IMPCHase bienzyme N900_13255 PF02844 Phosphoribosylglycinamide synthetase, N domain N900_13255 PF02843 Phosphoribosylglycinamide synthetase, C domain N900_13255 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain N900_13265 PF00216 Bacterial DNA-binding protein N900_13270 PF01595 Cyclin M transmembrane N-terminal domain N900_13270 PF00571 CBS domain N900_13275 PF00480 ROK family N900_13280 PF01238 Phosphomannose isomerase type I N900_13285 PF04222 Protein of unknown function (DUF416) N900_13290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N900_13295 PF03167 Uracil DNA glycosylase superfamily N900_13300 PF00924 Mechanosensitive ion channel N900_13305 PF00753 Metallo-beta-lactamase superfamily N900_13305 PF10996 Beta-Casp domain N900_13305 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain N900_13310 PF02397 Bacterial sugar transferase N900_13315 PF01370 NAD dependent epimerase/dehydratase family N900_13320 PF02719 Polysaccharide biosynthesis protein N900_13345 PF00132 Bacterial transferase hexapeptide (six repeats) N900_13355 PF00171 Aldehyde dehydrogenase family N900_13355 PF00465 Iron-containing alcohol dehydrogenase N900_13360 PF13193 AMP-binding enzyme C-terminal domain N900_13360 PF00501 AMP-binding enzyme N900_13370 PF00005 ABC transporter N900_13370 PF14524 Wzt C-terminal domain N900_13385 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family N900_13390 PF16363 GDP-mannose 4,6 dehydratase N900_13395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N900_13395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N900_13395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N900_13395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N900_13400 PF00483 Nucleotidyl transferase N900_13400 PF01050 Mannose-6-phosphate isomerase N900_13405 PF01370 NAD dependent epimerase/dehydratase family N900_13410 PF00457 Glycosyl hydrolases family 11 N900_13410 PF01522 Polysaccharide deacetylase N900_13425 PF01075 Glycosyltransferase family 9 (heptosyltransferase) N900_13435 PF04488 Glycosyltransferase sugar-binding region containing DXD motif N900_13440 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) N900_13475 PF01075 Glycosyltransferase family 9 (heptosyltransferase) N900_13480 PF00535 Glycosyl transferase family 2 N900_13485 PF01075 Glycosyltransferase family 9 (heptosyltransferase) N900_13490 PF01467 Cytidylyltransferase-like N900_13495 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain N900_13495 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain N900_13495 PF06827 Zinc finger found in FPG and IleRS N900_13505 PF00471 Ribosomal protein L33 N900_13510 PF00830 Ribosomal L28 family N900_13515 PF04002 RadC-like JAB domain N900_13520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_13520 PF02743 Cache domain N900_13520 PF00672 HAMP domain N900_13525 PF04127 DNA / pantothenate metabolism flavoprotein N900_13525 PF02441 Flavoprotein N900_13530 PF00440 Bacterial regulatory proteins, tetR family N900_13535 PF03279 Bacterial lipid A biosynthesis acyltransferase N900_13540 PF03279 Bacterial lipid A biosynthesis acyltransferase N900_13545 PF00156 Phosphoribosyl transferase domain N900_13550 PF03725 3' exoribonuclease family, domain 2 N900_13550 PF01138 3' exoribonuclease family, domain 1 N900_13555 PF08340 Domain of unknown function (DUF1732) N900_13555 PF03755 YicC-like family, N-terminal region N900_13560 PF03350 Uncharacterized protein family, UPF0114 N900_13565 PF02378 Phosphotransferase system, EIIC N900_13565 PF00367 phosphotransferase system, EIIB N900_13570 PF13580 SIS domain N900_13575 PF01380 SIS domain N900_13575 PF01418 Helix-turn-helix domain, rpiR family N900_13580 PF01032 FecCD transport family N900_13585 PF01497 Periplasmic binding protein N900_13590 PF00005 ABC transporter N900_13595 PF00593 TonB dependent receptor N900_13595 PF07715 TonB-dependent Receptor Plug Domain N900_13600 PF00664 ABC transporter transmembrane region N900_13600 PF00005 ABC transporter N900_13615 PF00270 DEAD/DEAH box helicase N900_13615 PF00271 Helicase conserved C-terminal domain N900_13615 PF09382 RQC domain N900_13615 PF16124 RecQ zinc-binding N900_13615 PF00570 HRDC domain N900_13620 PF00892 EamA-like transporter family N900_13630 PF12833 Helix-turn-helix domain N900_13635 PF01810 LysE type translocator N900_13640 PF00580 UvrD/REP helicase N-terminal domain N900_13640 PF13361 UvrD-like helicase C-terminal domain N900_13645 PF01432 Peptidase family M3 N900_13650 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ N900_13655 PF07992 Pyridine nucleotide-disulphide oxidoreductase N900_13655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N900_13720 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N900_13730 PF00528 Binding-protein-dependent transport system inner membrane component N900_13730 PF12911 N-terminal TM domain of oligopeptide transport permease C N900_13740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N900_13745 PF00005 ABC transporter N900_13745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N900_13780 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N900_13785 PF13361 UvrD-like helicase C-terminal domain N900_13785 PF00580 UvrD/REP helicase N-terminal domain N900_13790 PF00440 Bacterial regulatory proteins, tetR family N900_13795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N900_13800 PF00873 AcrB/AcrD/AcrF family N900_13805 PF04380 Membrane fusogenic activity N900_13810 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain N900_13810 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain N900_13815 PF03466 LysR substrate binding domain N900_13815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_13860 PF12724 Flavodoxin domain N900_13865 PF02386 Cation transport protein N900_13870 PF01205 Uncharacterized protein family UPF0029 N900_13870 PF09186 Domain of unknown function (DUF1949) N900_13875 PF00378 Enoyl-CoA hydratase/isomerase N900_13875 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain N900_13875 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain N900_13880 PF02803 Thiolase, C-terminal domain N900_13880 PF00108 Thiolase, N-terminal domain N900_13885 PF03466 LysR substrate binding domain N900_13885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_13890 PF07690 Major Facilitator Superfamily N900_13895 PF00132 Bacterial transferase hexapeptide (six repeats) N900_13895 PF12804 MobA-like NTP transferase domain N900_13900 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain N900_13900 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain N900_13905 PF02874 ATP synthase alpha/beta family, beta-barrel domain N900_13905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N900_13910 PF00231 ATP synthase N900_13915 PF00306 ATP synthase alpha/beta chain, C terminal domain N900_13915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N900_13915 PF02874 ATP synthase alpha/beta family, beta-barrel domain N900_13920 PF00213 ATP synthase delta (OSCP) subunit N900_13925 PF00430 ATP synthase B/B' CF(0) N900_13930 PF00137 ATP synthase subunit C N900_13935 PF00119 ATP synthase A chain N900_13940 PF03899 ATP synthase I chain N900_13945 PF02195 ParB-like nuclease domain N900_13945 PF17762 HTH domain found in ParB protein N900_13950 PF13614 AAA domain N900_13955 PF02527 rRNA small subunit methyltransferase G N900_13960 PF13932 GidA associated domain N900_13960 PF01134 Glucose inhibited division protein A N900_13985 PF01709 Transcriptional regulator N900_13990 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase N900_13990 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N900_13995 PF17200 Single Cache domain 2 N900_13995 PF00672 HAMP domain N900_13995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_14000 PF10928 Protein of unknown function (DUF2810) N900_14005 PF00196 Bacterial regulatory proteins, luxR family N900_14005 PF17874 MalT-like TPR region N900_14010 PF00343 Carbohydrate phosphorylase N900_14015 PF02446 4-alpha-glucanotransferase N900_14020 PF02806 Alpha amylase, C-terminal all-beta domain N900_14020 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) N900_14020 PF00128 Alpha amylase, catalytic domain N900_14025 PF05638 Type VI secretion system effector, Hcp N900_14030 PF16671 Actin cross-linking domain N900_14030 PF04717 Type VI secretion system, phage-baseplate injector N900_14055 PF01168 Alanine racemase, N-terminal domain N900_14055 PF01757 Acyltransferase family N900_14055 PF00842 Alanine racemase, C-terminal domain N900_14065 PF00939 Sodium:sulfate symporter transmembrane region N900_14070 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) N900_14075 PF00704 Glycosyl hydrolases family 18 N900_14075 PF08329 Chitinase A, N-terminal domain N900_14095 PF00672 HAMP domain N900_14095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_14095 PF02743 Cache domain N900_14115 PF01569 PAP2 superfamily N900_14120 PF00375 Sodium:dicarboxylate symporter family N900_14130 PF02630 SCO1/SenC N900_14145 PF03616 Sodium/glutamate symporter N900_14150 PF07238 PilZ domain N900_14150 PF12945 Flagellar protein YcgR N900_14165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N900_14165 PF00529 HlyD membrane-fusion protein of T1SS N900_14170 PF11742 Protein of unknown function (DUF3302) N900_14175 PF00990 Diguanylate cyclase, GGDEF domain N900_14190 PF01048 Phosphorylase superfamily N900_14195 PF08349 Protein of unknown function (DUF1722) N900_14200 PF13411 MerR HTH family regulatory protein N900_14205 PF00875 DNA photolyase N900_14205 PF03441 FAD binding domain of DNA photolyase N900_14210 PF17969 L,D-transpeptidase C-terminal domain N900_14210 PF03734 L,D-transpeptidase catalytic domain N900_14210 PF01476 LysM domain N900_14220 PF00270 DEAD/DEAH box helicase N900_14220 PF00271 Helicase conserved C-terminal domain N900_14225 PF00326 Prolyl oligopeptidase family N900_14225 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain N900_14230 PF07715 TonB-dependent Receptor Plug Domain N900_14230 PF00593 TonB dependent receptor N900_14250 PF00672 HAMP domain N900_14250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_14250 PF12729 Four helix bundle sensory module for signal transduction N900_14255 PF12849 PBP superfamily domain N900_14260 PF00528 Binding-protein-dependent transport system inner membrane component N900_14265 PF00528 Binding-protein-dependent transport system inner membrane component N900_14270 PF00005 ABC transporter N900_14275 PF00563 EAL domain N900_14275 PF03707 Bacterial signalling protein N terminal repeat N900_14275 PF00990 Diguanylate cyclase, GGDEF domain N900_14290 PF00916 Sulfate permease family N900_14290 PF01740 STAS domain N900_14300 PF01551 Peptidase family M23 N900_14300 PF08525 Opacity-associated protein A N-terminal motif N900_14300 PF01476 LysM domain N900_14305 PF00563 EAL domain N900_14305 PF00990 Diguanylate cyclase, GGDEF domain N900_14305 PF13188 PAS domain N900_14305 PF03707 Bacterial signalling protein N terminal repeat N900_14310 PF03466 LysR substrate binding domain N900_14310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_14315 PF07690 Major Facilitator Superfamily N900_14320 PF00376 MerR family regulatory protein N900_14320 PF09278 MerR, DNA binding N900_14340 PF00375 Sodium:dicarboxylate symporter family N900_14350 PF02001 Protein of unknown function DUF134 N900_14375 PF01447 Thermolysin metallopeptidase, catalytic domain N900_14375 PF02868 Thermolysin metallopeptidase, alpha-helical domain N900_14375 PF01483 Proprotein convertase P-domain N900_14375 PF07504 Fungalysin/Thermolysin Propeptide Motif N900_14385 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family N900_14385 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain N900_14390 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N900_14390 PF02894 Oxidoreductase family, C-terminal alpha/beta domain N900_14395 PF00581 Rhodanese-like domain N900_14400 PF00563 EAL domain N900_14400 PF00196 Bacterial regulatory proteins, luxR family N900_14405 PF13419 Haloacid dehalogenase-like hydrolase N900_14410 PF01740 STAS domain N900_14410 PF00916 Sulfate permease family N900_14415 PF00849 RNA pseudouridylate synthase N900_14475 PF10431 C-terminal, D2-small domain, of ClpB protein N900_14475 PF17871 AAA lid domain N900_14475 PF07724 AAA domain (Cdc48 subfamily) N900_14475 PF00004 ATPase family associated with various cellular activities (AAA) N900_14505 PF16671 Actin cross-linking domain N900_14505 PF04717 Type VI secretion system, phage-baseplate injector N900_14520 PF05025 RbsD / FucU transport protein family N900_14525 PF00005 ABC transporter N900_14530 PF02653 Branched-chain amino acid transport system / permease component N900_14535 PF13407 Periplasmic binding protein domain N900_14540 PF00294 pfkB family carbohydrate kinase N900_14545 PF00356 Bacterial regulatory proteins, lacI family N900_14550 PF04973 Nicotinamide mononucleotide transporter N900_14555 PF04973 Nicotinamide mononucleotide transporter N900_14560 PF01048 Phosphorylase superfamily N900_14570 PF03009 Glycerophosphoryl diester phosphodiesterase family N900_14575 PF07690 Major Facilitator Superfamily N900_14590 PF00512 His Kinase A (phospho-acceptor) domain N900_14590 PF02743 Cache domain N900_14590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_14595 PF02954 Bacterial regulatory protein, Fis family N900_14595 PF00072 Response regulator receiver domain N900_14595 PF00158 Sigma-54 interaction domain N900_14615 PF01266 FAD dependent oxidoreductase N900_14620 PF00041 Fibronectin type III domain N900_14620 PF12561 ToxR activated gene A lipoprotein domain N900_14625 PF01327 Polypeptide deformylase N900_14635 PF03334 Na+/H+ antiporter subunit N900_14640 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) N900_14660 PF00361 Proton-conducting membrane transporter N900_14660 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter N900_14660 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus N900_14660 PF13244 Domain of unknown function (DUF4040) N900_14670 PF00582 Universal stress protein family N900_14675 PF03222 Tryptophan/tyrosine permease family N900_14680 PF01212 Beta-eliminating lyase N900_14685 PF12843 Putative quorum-sensing-regulated virulence factor N900_14700 PF00563 EAL domain N900_14700 PF00990 Diguanylate cyclase, GGDEF domain N900_14700 PF08448 PAS fold N900_14705 PF00313 'Cold-shock' DNA-binding domain N900_14720 PF07584 Aerotolerance regulator N-terminal N900_14720 PF13519 von Willebrand factor type A domain N900_14735 PF01882 Protein of unknown function DUF58 N900_14740 PF17863 AAA lid domain N900_14740 PF07726 ATPase family associated with various cellular activities (AAA) N900_14745 PF02743 Cache domain N900_14745 PF00672 HAMP domain N900_14745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_14760 PF07670 Nucleoside recognition N900_14760 PF07662 Na+ dependent nucleoside transporter C-terminus N900_14760 PF01773 Na+ dependent nucleoside transporter N-terminus N900_14765 PF07687 Peptidase dimerisation domain N900_14765 PF01546 Peptidase family M20/M25/M40 N900_14775 PF00158 Sigma-54 interaction domain N900_14775 PF01590 GAF domain N900_14780 PF00970 Oxidoreductase FAD-binding domain N900_14780 PF00042 Globin N900_14780 PF00175 Oxidoreductase NAD-binding domain N900_14785 PF00313 'Cold-shock' DNA-binding domain N900_14790 PF03889 Alternative ribosome-rescue factor A N900_14805 PF00072 Response regulator receiver domain N900_14815 PF01256 Carbohydrate kinase N900_14815 PF03853 YjeF-related protein N-terminus N900_14820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N900_14820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N900_14830 PF07885 Ion channel N900_14840 PF00478 IMP dehydrogenase / GMP reductase domain N900_14845 PF00145 C-5 cytosine-specific DNA methylase N900_14865 PF01797 Transposase IS200 like N900_14870 PF00271 Helicase conserved C-terminal domain N900_14870 PF00270 DEAD/DEAH box helicase N900_14875 PF03605 Anaerobic c4-dicarboxylate membrane transporter N900_14880 PF02540 NAD synthase N900_14885 PF01467 Cytidylyltransferase-like N900_14890 PF11849 Domain of unknown function (DUF3369) N900_14895 PF00512 His Kinase A (phospho-acceptor) domain N900_14895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_14895 PF00497 Bacterial extracellular solute-binding proteins, family 3 N900_14905 PF03553 Na+/H+ antiporter family N900_14910 PF07690 Major Facilitator Superfamily N900_14920 PF00990 Diguanylate cyclase, GGDEF domain N900_14920 PF08448 PAS fold N900_14925 PF00657 GDSL-like Lipase/Acylhydrolase N900_14930 PF07968 Leukocidin/Hemolysin toxin family N900_14930 PF12563 Hemolytic toxin N terminal N900_14930 PF16458 Beta-prism lectin N900_14935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_14935 PF00672 HAMP domain N900_14935 PF12729 Four helix bundle sensory module for signal transduction N900_14940 PF00561 alpha/beta hydrolase fold N900_14945 PF03280 Proteobacterial lipase chaperone protein N900_14950 PF00801 PKD domain N900_14950 PF05547 Immune inhibitor A peptidase M6 N900_14970 PF01032 FecCD transport family N900_14975 PF01032 FecCD transport family N900_14980 PF00005 ABC transporter N900_14985 PF12833 Helix-turn-helix domain N900_14990 PF07715 TonB-dependent Receptor Plug Domain N900_14990 PF00593 TonB dependent receptor N900_15000 PF00871 Acetokinase family N900_15015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_15015 PF00672 HAMP domain N900_15015 PF00512 His Kinase A (phospho-acceptor) domain N900_15020 PF00486 Transcriptional regulatory protein, C terminal N900_15020 PF00072 Response regulator receiver domain N900_15035 PF01261 Xylose isomerase-like TIM barrel N900_15040 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family N900_15050 PF00596 Class II Aldolase and Adducin N-terminal domain N900_15055 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N900_15060 PF03611 PTS system sugar-specific permease component N900_15065 PF00455 DeoR C terminal sensor domain N900_15065 PF08220 DeoR-like helix-turn-helix domain N900_15075 PF01292 Prokaryotic cytochrome b561 N900_15080 PF00128 Alpha amylase, catalytic domain N900_15085 PF00132 Bacterial transferase hexapeptide (six repeats) N900_15105 PF00486 Transcriptional regulatory protein, C terminal N900_15105 PF00072 Response regulator receiver domain N900_15110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_15110 PF00512 His Kinase A (phospho-acceptor) domain N900_15110 PF13426 PAS domain N900_15110 PF14827 Double sensory domain of two-component sensor kinase N900_15110 PF00672 HAMP domain N900_15155 PF07690 Major Facilitator Superfamily N900_15160 PF00672 HAMP domain N900_15160 PF02743 Cache domain N900_15160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_15170 PF00768 D-alanyl-D-alanine carboxypeptidase N900_15170 PF07943 Penicillin-binding protein 5, C-terminal domain N900_15185 PF00194 Eukaryotic-type carbonic anhydrase N900_15190 PF01797 Transposase IS200 like N900_15195 PF02347 Glycine cleavage system P-protein N900_15200 PF01597 Glycine cleavage H-protein N900_15205 PF00464 Serine hydroxymethyltransferase N900_15215 PF08669 Glycine cleavage T-protein C-terminal barrel domain N900_15215 PF01571 Aminomethyltransferase folate-binding domain N900_15225 PF01609 Transposase DDE domain N900_15225 PF05598 Transposase domain (DUF772) N900_15250 PF03129 Anticodon binding domain N900_15250 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N900_15250 PF02824 TGS domain N900_15250 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N900_15255 PF00707 Translation initiation factor IF-3, C-terminal domain N900_15255 PF05198 Translation initiation factor IF-3, N-terminal domain N900_15260 PF01632 Ribosomal protein L35 N900_15265 PF00453 Ribosomal protein L20 N900_15270 PF13495 Phage integrase, N-terminal SAM-like domain N900_15270 PF00589 Phage integrase family N900_15295 PF00132 Bacterial transferase hexapeptide (six repeats) N900_15335 PF01966 HD domain N900_15335 PF13286 Phosphohydrolase-associated domain N900_15360 PF00293 NUDIX domain N900_15365 PF13302 Acetyltransferase (GNAT) domain N900_15370 PF08212 Lipocalin-like domain N900_15400 PF00872 Transposase, Mutator family N900_15405 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ N900_15415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N900_15465 PF17676 LD-carboxypeptidase C-terminal domain N900_15465 PF02016 LD-carboxypeptidase N-terminal domain N900_15480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N900_15510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N900_15545 PF04229 GrpB protein N900_15550 PF01810 LysE type translocator N900_15580 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH N900_15630 PF00665 Integrase core domain N900_15635 PF01527 Transposase N900_15720 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB N900_15725 PF01381 Helix-turn-helix N900_15735 PF17676 LD-carboxypeptidase C-terminal domain N900_15735 PF02016 LD-carboxypeptidase N-terminal domain N900_15755 PF08212 Lipocalin-like domain N900_15760 PF05016 ParE toxin of type II toxin-antitoxin system, parDE N900_15780 PF01555 DNA methylase N900_15820 PF12833 Helix-turn-helix domain N900_15820 PF01965 DJ-1/PfpI family N900_15860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N900_15875 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system N900_15880 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA N900_15895 PF01609 Transposase DDE domain N900_15895 PF05598 Transposase domain (DUF772) N900_15920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N900_15930 PF05016 ParE toxin of type II toxin-antitoxin system, parDE N900_16005 PF01797 Transposase IS200 like N900_16065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N900_16070 PF01527 Transposase N900_16075 PF00665 Integrase core domain N900_16090 PF03477 ATP cone domain N900_16090 PF13597 Anaerobic ribonucleoside-triphosphate reductase N900_16100 PF00155 Aminotransferase class I and II N900_16105 PF18030 RimK PreATP-grasp domain N900_16105 PF08443 RimK-like ATP-grasp domain N900_16110 PF02378 Phosphotransferase system, EIIC N900_16110 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N900_16115 PF00294 pfkB family carbohydrate kinase N900_16120 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N900_16120 PF00381 PTS HPr component phosphorylation site N900_16125 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family N900_16125 PF00356 Bacterial regulatory proteins, lacI family N900_16130 PF00149 Calcineurin-like phosphoesterase N900_16130 PF12320 Type 5 capsule protein repressor C-terminal domain N900_16135 PF13476 AAA domain N900_16140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_16140 PF00072 Response regulator receiver domain N900_16145 PF00155 Aminotransferase class I and II N900_16155 PF00654 Voltage gated chloride channel N900_16160 PF02492 CobW/HypB/UreG, nucleotide-binding domain N900_16160 PF07683 Cobalamin synthesis protein cobW C-terminal domain N900_16165 PF01926 50S ribosome-binding GTPase N900_16170 PF02705 K+ potassium transporter N900_16175 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg N900_16175 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II N900_16175 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase N900_16175 PF10371 Domain of unknown function N900_16175 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N900_16180 PF02702 Osmosensitive K+ channel His kinase sensor domain N900_16180 PF00512 His Kinase A (phospho-acceptor) domain N900_16180 PF13493 Domain of unknown function (DUF4118) N900_16180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_16185 PF00486 Transcriptional regulatory protein, C terminal N900_16185 PF00072 Response regulator receiver domain N900_16190 PF02416 mttA/Hcf106 family N900_16195 PF09335 SNARE associated Golgi protein N900_16205 PF10388 EAL-domain associated signalling protein domain N900_16205 PF00563 EAL domain N900_16215 PF01292 Prokaryotic cytochrome b561 N900_16220 PF04264 YceI-like domain N900_16225 PF01226 Formate/nitrite transporter N900_16235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_16235 PF03466 LysR substrate binding domain N900_16240 PF06496 Protein of unknown function (DUF1097) N900_16245 PF11398 Protein of unknown function (DUF2813) N900_16250 PF02872 5'-nucleotidase, C-terminal domain N900_16250 PF00149 Calcineurin-like phosphoesterase N900_16255 PF03741 Integral membrane protein TerC family N900_16265 PF08274 PhnA Zinc-Ribbon N900_16265 PF03831 PhnA domain N900_16295 PF00990 Diguanylate cyclase, GGDEF domain N900_16295 PF17151 Periplasmic sensor domain N900_16315 PF17158 Membrane-associated sensor, integral membrane domain N900_16315 PF00990 Diguanylate cyclase, GGDEF domain N900_16330 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch N900_16330 PF01262 Alanine dehydrogenase/PNT, C-terminal domain N900_16330 PF05222 Alanine dehydrogenase/PNT, N-terminal domain N900_16335 PF02233 NAD(P) transhydrogenase beta subunit N900_16345 PF00486 Transcriptional regulatory protein, C terminal N900_16345 PF00072 Response regulator receiver domain N900_16360 PF03701 Uncharacterised protein family (UPF0181) N900_16370 PF01253 Translation initiation factor SUI1 N900_16380 PF01820 D-ala D-ala ligase N-terminus N900_16380 PF07478 D-ala D-ala ligase C-terminus N900_16390 PF13607 Succinyl-CoA ligase like flavodoxin domain N900_16390 PF00583 Acetyltransferase (GNAT) family N900_16390 PF13380 CoA binding domain N900_16395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_16395 PF03466 LysR substrate binding domain N900_16400 PF07715 TonB-dependent Receptor Plug Domain N900_16400 PF00593 TonB dependent receptor N900_16405 PF12793 Sugar transport-related sRNA regulator N-term N900_16405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N900_16415 PF03061 Thioesterase superfamily N900_16435 PF02798 Glutathione S-transferase, N-terminal domain N900_16435 PF00043 Glutathione S-transferase, C-terminal domain N900_16450 PF12804 MobA-like NTP transferase domain N900_16450 PF03479 Plants and Prokaryotes Conserved (PCC) domain N900_16450 PF00132 Bacterial transferase hexapeptide (six repeats) N900_16455 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N900_16455 PF00005 ABC transporter N900_16460 PF12911 N-terminal TM domain of oligopeptide transport permease C N900_16460 PF00528 Binding-protein-dependent transport system inner membrane component N900_16465 PF00528 Binding-protein-dependent transport system inner membrane component N900_16470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N900_16495 PF00854 POT family N900_16505 PF07702 UTRA domain N900_16505 PF00392 Bacterial regulatory proteins, gntR family N900_16510 PF00528 Binding-protein-dependent transport system inner membrane component N900_16515 PF00005 ABC transporter N900_16525 PF00266 Aminotransferase class-V N900_16535 PF13419 Haloacid dehalogenase-like hydrolase N900_16540 PF01272 Transcription elongation factor, GreA/GreB, C-term N900_16540 PF14760 Rnk N-terminus N900_16545 PF13419 Haloacid dehalogenase-like hydrolase N900_16560 PF01741 Large-conductance mechanosensitive channel, MscL N900_16565 PF01268 Formate--tetrahydrofolate ligase N900_16570 PF01625 Peptide methionine sulfoxide reductase N900_16570 PF01641 SelR domain N900_16575 PF01227 GTP cyclohydrolase I N900_16580 PF00994 Probable molybdopterin binding domain N900_16580 PF03453 MoeA N-terminal region (domain I and II) N900_16580 PF03454 MoeA C-terminal region (domain IV) N900_16585 PF00899 ThiF family N900_16595 PF00581 Rhodanese-like domain N900_16600 PF04198 Putative sugar-binding domain N900_16610 PF00923 Transaldolase/Fructose-6-phosphate aldolase N900_16630 PF02810 SEC-C motif N900_16630 PF07517 SecA DEAD-like domain N900_16630 PF07516 SecA Wing and Scaffold domain N900_16630 PF01043 SecA preprotein cross-linking domain N900_16640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N900_16640 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N900_16655 PF06942 GlpM protein N900_16665 PF03466 LysR substrate binding domain N900_16665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_16670 PF03992 Antibiotic biosynthesis monooxygenase N900_16680 PF00873 AcrB/AcrD/AcrF family N900_16695 PF04143 Sulphur transport N900_16710 PF07992 Pyridine nucleotide-disulphide oxidoreductase N900_16710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N900_16755 PF00367 phosphotransferase system, EIIB N900_16755 PF02378 Phosphotransferase system, EIIC N900_16765 PF00251 Glycosyl hydrolases family 32 N-terminal domain N900_16765 PF08244 Glycosyl hydrolases family 32 C terminal N900_16770 PF00294 pfkB family carbohydrate kinase N900_16775 PF16901 C-terminal domain of alpha-glycerophosphate oxidase N900_16775 PF01266 FAD dependent oxidoreductase N900_16780 PF00672 HAMP domain N900_16780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_16785 PF00691 OmpA family N900_16785 PF13488 Glycine zipper N900_16790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N900_16790 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase N900_16795 PF13419 Haloacid dehalogenase-like hydrolase N900_16800 PF00672 HAMP domain N900_16800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_16800 PF12729 Four helix bundle sensory module for signal transduction N900_16805 PF03606 C4-dicarboxylate anaerobic carrier N900_16810 PF03313 Serine dehydratase alpha chain N900_16810 PF03315 Serine dehydratase beta chain N900_16815 PF00474 Sodium:solute symporter family N900_16830 PF00356 Bacterial regulatory proteins, lacI family N900_16835 PF00072 Response regulator receiver domain N900_16835 PF00196 Bacterial regulatory proteins, luxR family N900_16840 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term N900_16840 PF07730 Histidine kinase N900_16840 PF00672 HAMP domain N900_16840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_16845 PF12838 4Fe-4S dicluster domain N900_16845 PF13187 4Fe-4S dicluster domain N900_16855 PF01568 Molydopterin dinucleotide binding domain N900_16855 PF00384 Molybdopterin oxidoreductase N900_16855 PF04879 Molybdopterin oxidoreductase Fe4S4 domain N900_16860 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) N900_16865 PF03264 NapC/NirT cytochrome c family, N-terminal region N900_16875 PF01966 HD domain N900_16880 PF00072 Response regulator receiver domain N900_16880 PF00196 Bacterial regulatory proteins, luxR family N900_16885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_16885 PF07730 Histidine kinase N900_16885 PF05231 MASE1 N900_16890 PF07690 Major Facilitator Superfamily N900_16900 PF00528 Binding-protein-dependent transport system inner membrane component N900_16905 PF00005 ABC transporter N900_16905 PF08402 TOBE domain N900_16910 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus N900_16920 PF00108 Thiolase, N-terminal domain N900_16920 PF02803 Thiolase, C-terminal domain N900_16925 PF00106 short chain dehydrogenase N900_16930 PF02355 Protein export membrane protein N900_16930 PF07549 SecD/SecF GG Motif N900_16935 PF02355 Protein export membrane protein N900_16935 PF13721 SecD export protein N-terminal TM region N900_16935 PF07549 SecD/SecF GG Motif N900_16950 PF00990 Diguanylate cyclase, GGDEF domain N900_16950 PF17158 Membrane-associated sensor, integral membrane domain N900_16955 PF00483 Nucleotidyl transferase N900_16960 PF06483 Chitinase C N900_16960 PF00704 Glycosyl hydrolases family 18 N900_16965 PF00465 Iron-containing alcohol dehydrogenase N900_16975 PF02954 Bacterial regulatory protein, Fis family N900_16975 PF00072 Response regulator receiver domain N900_16975 PF14532 Sigma-54 interaction domain N900_16980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_16980 PF02743 Cache domain N900_16980 PF00512 His Kinase A (phospho-acceptor) domain N900_16990 PF07690 Major Facilitator Superfamily N900_16995 PF00224 Pyruvate kinase, barrel domain N900_16995 PF02887 Pyruvate kinase, alpha/beta domain N900_17000 PF01627 Hpt domain N900_17000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_17000 PF00672 HAMP domain N900_17000 PF00072 Response regulator receiver domain N900_17000 PF00512 His Kinase A (phospho-acceptor) domain N900_17005 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family N900_17010 PF02142 MGS-like domain N900_17015 PF00857 Isochorismatase family N900_17020 PF01219 Prokaryotic diacylglycerol kinase N900_17035 PF12462 DNA helicase IV / RNA helicase N terminal N900_17035 PF00580 UvrD/REP helicase N-terminal domain N900_17035 PF13361 UvrD-like helicase C-terminal domain N900_17040 PF12805 FUSC-like inner membrane protein yccS N900_17045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_17045 PF00072 Response regulator receiver domain N900_17045 PF13188 PAS domain N900_17045 PF08448 PAS fold N900_17045 PF00512 His Kinase A (phospho-acceptor) domain N900_17070 PF03459 TOBE domain N900_17070 PF00005 ABC transporter N900_17075 PF00528 Binding-protein-dependent transport system inner membrane component N900_17085 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain N900_17085 PF07685 CobB/CobQ-like glutamine amidotransferase domain N900_17130 PF00512 His Kinase A (phospho-acceptor) domain N900_17130 PF09308 LuxQ, periplasmic N900_17130 PF00072 Response regulator receiver domain N900_17130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_17135 PF13407 Periplasmic binding protein domain N900_17150 PF04337 Protein of unknown function, DUF480 N900_17160 PF04363 Protein of unknown function (DUF496) N900_17175 PF02782 FGGY family of carbohydrate kinases, C-terminal domain N900_17175 PF00370 FGGY family of carbohydrate kinases, N-terminal domain N900_17180 PF00230 Major intrinsic protein N900_17190 PF04324 BFD-like [2Fe-2S] binding domain N900_17190 PF01266 FAD dependent oxidoreductase N900_17195 PF00890 FAD binding domain N900_17200 PF02754 Cysteine-rich domain N900_17200 PF13183 4Fe-4S dicluster domain N900_17205 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N900_17205 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N900_17210 PF00085 Thioredoxin N900_17215 PF07690 Major Facilitator Superfamily N900_17240 PF03466 LysR substrate binding domain N900_17240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_17245 PF00528 Binding-protein-dependent transport system inner membrane component N900_17250 PF00528 Binding-protein-dependent transport system inner membrane component N900_17255 PF00497 Bacterial extracellular solute-binding proteins, family 3 N900_17260 PF00005 ABC transporter N900_17270 PF05762 VWA domain containing CoxE-like protein N900_17275 PF07728 AAA domain (dynein-related subfamily) N900_17275 PF17868 AAA lid domain N900_17275 PF12592 Protein of unknown function (DUF3763) N900_17280 PF00293 NUDIX domain N900_17285 PF01212 Beta-eliminating lyase N900_17290 PF00034 Cytochrome c N900_17295 PF00440 Bacterial regulatory proteins, tetR family N900_17295 PF08361 MAATS-type transcriptional repressor, C-terminal region N900_17300 PF00270 DEAD/DEAH box helicase N900_17300 PF00271 Helicase conserved C-terminal domain N900_17305 PF04336 Acyl carrier protein phosphodiesterase N900_17315 PF03222 Tryptophan/tyrosine permease family N900_17320 PF00672 HAMP domain N900_17320 PF12729 Four helix bundle sensory module for signal transduction N900_17320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_17325 PF16363 GDP-mannose 4,6 dehydratase N900_17330 PF03746 LamB/YcsF family N900_17340 PF02626 Carboxyltransferase domain, subdomain A and B N900_17350 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain N900_17350 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain N900_17360 PF00005 ABC transporter N900_17365 PF13472 GDSL-like Lipase/Acylhydrolase family N900_17370 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase N900_17370 PF07055 Enoyl reductase FAD binding domain N900_17370 PF12241 Trans-2-enoyl-CoA reductase catalytic region N900_17375 PF00563 EAL domain N900_17375 PF00498 FHA domain N900_17375 PF00990 Diguanylate cyclase, GGDEF domain N900_17390 PF01556 DnaJ C terminal domain N900_17390 PF00226 DnaJ domain N900_17390 PF00684 DnaJ central domain N900_17405 PF00665 Integrase core domain N900_17410 PF01527 Transposase N900_17425 PF00239 Resolvase, N terminal domain N900_17425 PF02796 Helix-turn-helix domain of resolvase N900_17435 PF13419 Haloacid dehalogenase-like hydrolase N900_17450 PF00294 pfkB family carbohydrate kinase N900_17455 PF00884 Sulfatase N900_17465 PF00270 DEAD/DEAH box helicase N900_17465 PF03880 DbpA RNA binding domain N900_17465 PF00271 Helicase conserved C-terminal domain N900_17470 PF08206 Ribonuclease B OB domain N900_17470 PF00575 S1 RNA binding domain N900_17470 PF00773 RNB domain N900_17480 PF12849 PBP superfamily domain N900_17485 PF01575 MaoC like domain N900_17490 PF04244 Deoxyribodipyrimidine photo-lyase-related protein N900_17495 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading N900_17495 PF18416 N-acetylglucosamine binding protein domain 2 N900_17500 PF04151 Bacterial pre-peptidase C-terminal domain N900_17500 PF03413 Peptidase propeptide and YPEB domain N900_17500 PF01447 Thermolysin metallopeptidase, catalytic domain N900_17500 PF02868 Thermolysin metallopeptidase, alpha-helical domain N900_17500 PF07504 Fungalysin/Thermolysin Propeptide Motif N900_17505 PF04389 Peptidase family M28 N900_17505 PF04151 Bacterial pre-peptidase C-terminal domain N900_17510 PF00491 Arginase family N900_17515 PF17810 Arginine decarboxylase helical bundle domain N900_17515 PF17944 Arginine decarboxylase C-terminal helical extension N900_17515 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain N900_17525 PF00571 CBS domain N900_17525 PF01769 Divalent cation transporter N900_17525 PF03448 MgtE intracellular N domain N900_17530 PF00166 Chaperonin 10 Kd subunit N900_17535 PF00118 TCP-1/cpn60 chaperonin family N900_17545 PF00696 Amino acid kinase family N900_17545 PF13840 ACT domain N900_17550 PF06339 Ectoine synthase N900_17555 PF00202 Aminotransferase class-III N900_17560 PF00583 Acetyltransferase (GNAT) family N900_17565 PF01329 Pterin 4 alpha carbinolamine dehydratase N900_17570 PF00351 Biopterin-dependent aromatic amino acid hydroxylase N900_17575 PF00501 AMP-binding enzyme N900_17575 PF13193 AMP-binding enzyme C-terminal domain N900_17595 PF03466 LysR substrate binding domain N900_17595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_17605 PF00892 EamA-like transporter family N900_17610 PF14602 Hexapeptide repeat of succinyl-transferase N900_17610 PF00132 Bacterial transferase hexapeptide (six repeats) N900_17610 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal N900_17615 PF03471 Transporter associated domain N900_17615 PF01595 Cyclin M transmembrane N-terminal domain N900_17615 PF00571 CBS domain N900_17620 PF02566 OsmC-like protein N900_17625 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N900_17630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N900_17630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N900_17645 PF13520 Amino acid permease N900_17650 PF00990 Diguanylate cyclase, GGDEF domain N900_17660 PF00072 Response regulator receiver domain N900_17660 PF04397 LytTr DNA-binding domain N900_17665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_17665 PF06580 Histidine kinase N900_17665 PF07694 5TMR of 5TMR-LYT N900_17665 PF13492 GAF domain N900_17680 PF12704 MacB-like periplasmic core domain N900_17680 PF02687 FtsX-like permease family N900_17680 PF00005 ABC transporter N900_17685 PF00005 ABC transporter N900_17700 PF00248 Aldo/keto reductase family N900_17705 PF00128 Alpha amylase, catalytic domain N900_17720 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) N900_17725 PF12262 Bacterial virulence factor lipase N-terminal N900_17730 PF13426 PAS domain N900_17730 PF08447 PAS fold N900_17730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_17735 PF01447 Thermolysin metallopeptidase, catalytic domain N900_17735 PF04151 Bacterial pre-peptidase C-terminal domain N900_17735 PF02868 Thermolysin metallopeptidase, alpha-helical domain N900_17735 PF07504 Fungalysin/Thermolysin Propeptide Motif N900_17735 PF03413 Peptidase propeptide and YPEB domain N900_17740 PF03922 OmpW family N900_17750 PF00768 D-alanyl-D-alanine carboxypeptidase N900_17755 PF00155 Aminotransferase class I and II N900_17755 PF00392 Bacterial regulatory proteins, gntR family N900_17760 PF01654 Cytochrome bd terminal oxidase subunit I N900_17765 PF02322 Cytochrome bd terminal oxidase subunit II N900_17775 PF00291 Pyridoxal-phosphate dependent enzyme N900_17780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_17780 PF03466 LysR substrate binding domain N900_17820 PF08240 Alcohol dehydrogenase GroES-like domain N900_17820 PF00107 Zinc-binding dehydrogenase N900_17825 PF00155 Aminotransferase class I and II N900_17830 PF01965 DJ-1/PfpI family N900_17845 PF03466 LysR substrate binding domain N900_17845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_17850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N900_17875 PF01966 HD domain N900_17880 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain N900_17880 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain N900_17885 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase N900_17890 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N900_17890 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain N900_17920 PF02447 GntP family permease N900_17925 PF13556 PucR C-terminal helix-turn-helix domain N900_17925 PF17853 GGDEF-like domain N900_17925 PF05651 Putative sugar diacid recognition N900_17930 PF00672 HAMP domain N900_17930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_17935 PF01243 Pyridoxamine 5'-phosphate oxidase N900_17940 PF06228 Haem utilisation ChuX/HutX N900_17945 PF04055 Radical SAM superfamily N900_17950 PF03544 Gram-negative bacterial TonB protein C-terminal N900_17955 PF01618 MotA/TolQ/ExbB proton channel family N900_17960 PF02472 Biopolymer transport protein ExbD/TolR N900_17965 PF01497 Periplasmic binding protein N900_17970 PF01032 FecCD transport family N900_17975 PF00005 ABC transporter N900_18005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_18005 PF02743 Cache domain N900_18005 PF00672 HAMP domain N900_18010 PF00111 2Fe-2S iron-sulfur cluster binding domain N900_18010 PF00111 2Fe-2S iron-sulfur cluster binding domain N900_18010 PF03473 MOSC domain N900_18010 PF03476 MOSC N-terminal beta barrel domain N900_18010 PF03473 MOSC domain N900_18010 PF03476 MOSC N-terminal beta barrel domain N900_18015 PF01979 Amidohydrolase family N900_18025 PF05656 Protein of unknown function (DUF805) N900_18035 PF05958 tRNA (Uracil-5-)-methyltransferase N900_18040 PF05661 Protein of unknown function (DUF808) N900_18050 PF00313 'Cold-shock' DNA-binding domain N900_18075 PF08448 PAS fold N900_18075 PF00990 Diguanylate cyclase, GGDEF domain N900_18080 PF08220 DeoR-like helix-turn-helix domain N900_18080 PF00455 DeoR C terminal sensor domain N900_18095 PF00528 Binding-protein-dependent transport system inner membrane component N900_18100 PF14785 Maltose transport system permease protein MalF P2 domain N900_18100 PF00528 Binding-protein-dependent transport system inner membrane component N900_18105 PF01547 Bacterial extracellular solute-binding protein N900_18110 PF00005 ABC transporter N900_18110 PF08402 TOBE domain N900_18115 PF13302 Acetyltransferase (GNAT) domain N900_18130 PF01906 Putative heavy-metal-binding N900_18135 PF00196 Bacterial regulatory proteins, luxR family N900_18145 PF01584 CheW-like domain N900_18145 PF00072 Response regulator receiver domain N900_18150 PF01047 MarR family N900_18155 PF00990 Diguanylate cyclase, GGDEF domain N900_18170 PF00563 EAL domain N900_18170 PF03707 Bacterial signalling protein N terminal repeat N900_18170 PF00990 Diguanylate cyclase, GGDEF domain N900_18190 PF03466 LysR substrate binding domain N900_18190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_18195 PF00563 EAL domain N900_18195 PF00990 Diguanylate cyclase, GGDEF domain N900_18210 PF02678 Pirin N900_18210 PF05726 Pirin C-terminal cupin domain N900_18215 PF06865 Pyrimidine/purine nucleoside phosphorylase N900_18225 PF07690 Major Facilitator Superfamily N900_18235 PF00672 HAMP domain N900_18235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_18235 PF17200 Single Cache domain 2 N900_18240 PF13654 AAA domain N900_18240 PF05362 Lon protease (S16) C-terminal proteolytic domain N900_18250 PF00005 ABC transporter N900_18250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N900_18255 PF00497 Bacterial extracellular solute-binding proteins, family 3 N900_18270 PF03466 LysR substrate binding domain N900_18270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_18275 PF02652 L-lactate permease N900_18280 PF01070 FMN-dependent dehydrogenase N900_18290 PF03618 Kinase/pyrophosphorylase N900_18300 PF00391 PEP-utilising enzyme, mobile domain N900_18300 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain N900_18300 PF02896 PEP-utilising enzyme, TIM barrel domain N900_18305 PF08447 PAS fold N900_18305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_18310 PF01554 MatE N900_18315 PF00271 Helicase conserved C-terminal domain N900_18315 PF00270 DEAD/DEAH box helicase N900_18320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_18320 PF03466 LysR substrate binding domain N900_18330 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N900_18340 PF00005 ABC transporter N900_18340 PF00664 ABC transporter transmembrane region N900_18350 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N900_18360 PF01810 LysE type translocator N900_18365 PF12833 Helix-turn-helix domain N900_18380 PF01557 Fumarylacetoacetate (FAA) hydrolase family N900_18385 PF01047 MarR family N900_18390 PF02566 OsmC-like protein N900_18395 PF13609 Gram-negative porin N900_18400 PF00892 EamA-like transporter family N900_18405 PF00462 Glutaredoxin N900_18410 PF07670 Nucleoside recognition N900_18415 PF07670 Nucleoside recognition N900_18420 PF03600 Citrate transporter N900_18430 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain N900_18430 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain N900_18435 PF06029 AlkA N-terminal domain N900_18435 PF00730 HhH-GPD superfamily base excision DNA repair protein N900_18440 PF07681 DoxX N900_18445 PF03466 LysR substrate binding domain N900_18445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_18465 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase N900_18475 PF07148 Maltose operon periplasmic protein precursor (MalM) N900_18480 PF02264 LamB porin N900_18485 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) N900_18485 PF00128 Alpha amylase, catalytic domain N900_18495 PF12729 Four helix bundle sensory module for signal transduction N900_18495 PF00672 HAMP domain N900_18495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_18510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_18510 PF00672 HAMP domain N900_18520 PF00793 DAHP synthetase I family N900_18525 PF00005 ABC transporter N900_18530 PF00528 Binding-protein-dependent transport system inner membrane component N900_18535 PF00497 Bacterial extracellular solute-binding proteins, family 3 N900_18540 PF00528 Binding-protein-dependent transport system inner membrane component N900_18545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N900_18545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N900_18545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N900_18545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N900_18560 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N900_18560 PF02378 Phosphotransferase system, EIIC N900_18560 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N900_18565 PF01232 Mannitol dehydrogenase Rossmann domain N900_18565 PF08125 Mannitol dehydrogenase C-terminal domain N900_18570 PF05068 Mannitol repressor N900_18575 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N900_18605 PF13460 NAD(P)H-binding N900_18610 PF03466 LysR substrate binding domain N900_18610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_18615 PF00672 HAMP domain N900_18615 PF02743 Cache domain N900_18615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_18620 PF00106 short chain dehydrogenase N900_18625 PF03466 LysR substrate binding domain N900_18625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N900_18630 PF04013 Putative SAM-dependent RNA methyltransferase N900_18635 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase N900_18645 PF13520 Amino acid permease N900_18650 PF01276 Orn/Lys/Arg decarboxylase, major domain N900_18650 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain N900_18650 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain N900_18655 PF00171 Aldehyde dehydrogenase family N900_18660 PF01037 Lrp/AsnC ligand binding domain N900_18665 PF02743 Cache domain N900_18665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_18665 PF00672 HAMP domain N900_18675 PF00474 Sodium:solute symporter family N900_18685 PF01619 Proline dehydrogenase N900_18685 PF00171 Aldehyde dehydrogenase family N900_18685 PF18327 Proline utilization A proline dehydrogenase N-terminal domain N900_18685 PF14850 DNA-binding domain of Proline dehydrogenase N900_18690 PF12833 Helix-turn-helix domain N900_18700 PF03781 Sulfatase-modifying factor enzyme 1 N900_18705 PF00196 Bacterial regulatory proteins, luxR family N900_18705 PF00072 Response regulator receiver domain N900_18710 PF01243 Pyridoxamine 5'-phosphate oxidase N900_18710 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region N900_18715 PF00529 HlyD membrane-fusion protein of T1SS N900_18730 PF00664 ABC transporter transmembrane region N900_18730 PF03412 Peptidase C39 family N900_18730 PF00005 ABC transporter N900_18740 PF00072 Response regulator receiver domain N900_18740 PF00486 Transcriptional regulatory protein, C terminal N900_18750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_18750 PF00672 HAMP domain N900_18750 PF02743 Cache domain N900_18755 PF01339 CheB methylesterase N900_18755 PF00072 Response regulator receiver domain N900_18760 PF03975 CheD chemotactic sensory transduction N900_18765 PF01739 CheR methyltransferase, SAM binding domain N900_18765 PF03705 CheR methyltransferase, all-alpha domain N900_18770 PF00672 HAMP domain N900_18770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N900_18770 PF02203 Tar ligand binding domain homologue N900_18775 PF01584 CheW-like domain N900_18780 PF01584 CheW-like domain N900_18790 PF00072 Response regulator receiver domain N900_18815 PF12911 N-terminal TM domain of oligopeptide transport permease C N900_18815 PF00528 Binding-protein-dependent transport system inner membrane component N900_18820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N900_18820 PF00005 ABC transporter N900_18825 PF08019 Phosphoethanolamine transferase EptA/EptB N900_18825 PF00884 Sulfatase N900_18830 PF00512 His Kinase A (phospho-acceptor) domain N900_18830 PF08521 Two-component sensor kinase N-terminal N900_18830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N900_18835 PF00486 Transcriptional regulatory protein, C terminal N900_18835 PF00072 Response regulator receiver domain N900_18855 PF00501 AMP-binding enzyme N900_18865 PF13718 GNAT acetyltransferase 2 N900_18865 PF05127 Helicase N900_18870 PF13416 Bacterial extracellular solute-binding protein N900_18875 PF08775 ParB family N900_18875 PF02195 ParB-like nuclease domain N900_18880 PF18607 ParA helix turn helix domain N900_18880 PF13614 AAA domain