locus-tag class description VC395_0003 PF01177 Asp/Glu/Hydantoin racemase VC395_0004 PF05922 Peptidase inhibitor I9 VC395_0004 PF00082 Subtilase family VC395_0004 PF04151 Bacterial pre-peptidase C-terminal domain VC395_0005 PF07715 TonB-dependent Receptor Plug Domain VC395_0005 PF00593 TonB dependent receptor VC395_0006 PF13358 DDE superfamily endonuclease VC395_0008 PF01381 Helix-turn-helix VC395_0010 PF13657 HipA N-terminal domain VC395_0010 PF07804 HipA-like C-terminal domain VC395_0018 PF00665 Integrase core domain VC395_0019 PF01527 Transposase VC395_0021 PF02796 Helix-turn-helix domain of resolvase VC395_0021 PF00239 Resolvase, N terminal domain VC395_0026 PF05958 tRNA (Uracil-5-)-methyltransferase VC395_0028 PF00440 Bacterial regulatory proteins, tetR family VC395_0029 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VC395_0029 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC395_0030 PF00140 Sigma-70 factor, region 1.2 VC395_0030 PF04545 Sigma-70, region 4 VC395_0030 PF04542 Sigma-70 region 2 VC395_0031 PF18075 FtsX extracellular domain VC395_0032 PF00005 ABC transporter VC395_0033 PF00448 SRP54-type protein, GTPase domain VC395_0033 PF02881 SRP54-type protein, helical bundle domain VC395_0041 PF00210 Ferritin-like domain VC395_0043 PF08668 HDOD domain VC395_0043 PF00563 EAL domain VC395_0044 PF01810 LysE type translocator VC395_0045 PF12146 Serine aminopeptidase, S33 VC395_0050 PF08495 FIST N domain VC395_0050 PF00990 Diguanylate cyclase, GGDEF domain VC395_0050 PF00563 EAL domain VC395_0050 PF10442 FIST C domain VC395_0051 PF13419 Haloacid dehalogenase-like hydrolase VC395_0052 PF02899 Phage integrase, N-terminal SAM-like domain VC395_0052 PF00589 Phage integrase family VC395_0053 PF04340 Protein of unknown function, DUF484 VC395_0054 PF01678 Diaminopimelate epimerase VC395_0055 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VC395_0055 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VC395_0057 PF01491 Frataxin-like domain VC395_0058 PF01295 Adenylate cyclase, class-I VC395_0058 PF12633 Adenylate cyclase NT domain VC395_0060 PF03900 Porphobilinogen deaminase, C-terminal domain VC395_0060 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VC395_0061 PF02602 Uroporphyrinogen-III synthase HemD VC395_0062 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VC395_0063 PF07219 HemY protein N-terminus VC395_0064 PF04055 Radical SAM superfamily VC395_0064 PF06969 HemN C-terminal domain VC395_0065 PF10675 Protein of unknown function (DUF2489) VC395_0066 PF04220 Der GTPase activator (YihI) VC395_0068 PF00034 Cytochrome c VC395_0069 PF01926 50S ribosome-binding GTPase VC395_0072 PF01367 5'-3' exonuclease, C-terminal SAM fold VC395_0072 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VC395_0072 PF01612 3'-5' exonuclease VC395_0072 PF00476 DNA polymerase family A VC395_0075 PF00490 Delta-aminolevulinic acid dehydratase VC395_0077 PF01026 TatD related DNase VC395_0080 PF00581 Rhodanese-like domain VC395_0081 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VC395_0081 PF01694 Rhomboid family VC395_0082 PF00672 HAMP domain VC395_0082 PF02203 Tar ligand binding domain homologue VC395_0082 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_0083 PF03748 Flagellar basal body-associated protein FliL VC395_0085 PF04345 Chorismate lyase VC395_0086 PF01040 UbiA prenyltransferase family VC395_0087 PF01553 Acyltransferase VC395_0088 PF00717 Peptidase S24-like VC395_0088 PF01726 LexA DNA binding domain VC395_0090 PF01554 MatE VC395_0091 PF03150 Di-haem cytochrome c peroxidase VC395_0091 PF00034 Cytochrome c VC395_0092 PF00902 Sec-independent protein translocase protein (TatC) VC395_0093 PF02416 mttA/Hcf106 family VC395_0094 PF02416 mttA/Hcf106 family VC395_0095 PF03109 ABC1 family VC395_0096 PF02036 SCP-2 sterol transfer family VC395_0097 PF01209 ubiE/COQ5 methyltransferase family VC395_0098 PF02646 RmuC family VC395_0101 PF10625 Universal stress protein B (UspB) VC395_0102 PF00210 Ferritin-like domain VC395_0104 PF00582 Universal stress protein family VC395_0105 PF00892 EamA-like transporter family VC395_0107 PF04445 Putative SAM-dependent methyltransferase VC395_0108 PF08448 PAS fold VC395_0108 PF00990 Diguanylate cyclase, GGDEF domain VC395_0108 PF00563 EAL domain VC395_0109 PF01037 Lrp/AsnC ligand binding domain VC395_0111 PF07690 Major Facilitator Superfamily VC395_0112 PF03466 LysR substrate binding domain VC395_0112 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_0113 PF00557 Metallopeptidase family M24 VC395_0113 PF01321 Creatinase/Prolidase N-terminal domain VC395_0113 PF01321 Creatinase/Prolidase N-terminal domain VC395_0113 PF00557 Metallopeptidase family M24 VC395_0114 PF06968 Biotin and Thiamin Synthesis associated domain VC395_0114 PF04055 Radical SAM superfamily VC395_0115 PF05690 Thiazole biosynthesis protein ThiG VC395_0116 PF02597 ThiS family VC395_0117 PF00899 ThiF family VC395_0118 PF02581 Thiamine monophosphate synthase VC395_0119 PF01964 Radical SAM ThiC family VC395_0119 PF13667 ThiC-associated domain VC395_0120 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VC395_0122 PF00132 Bacterial transferase hexapeptide (six repeats) VC395_0124 PF01488 Shikimate / quinate 5-dehydrogenase VC395_0124 PF08501 Shikimate dehydrogenase substrate binding domain VC395_0124 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VC395_0125 PF01218 Coproporphyrinogen III oxidase VC395_0126 PF01300 Telomere recombination VC395_0128 PF00731 AIR carboxylase VC395_0129 PF02222 ATP-grasp domain VC395_0129 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VC395_0130 PF01396 Topoisomerase DNA binding C4 zinc finger VC395_0131 PF04361 Protein of unknown function (DUF494) VC395_0132 PF17782 DprA winged helix domain VC395_0132 PF02481 DNA recombination-mediator protein A VC395_0133 PF01476 LysM domain VC395_0134 PF01327 Polypeptide deformylase VC395_0135 PF02911 Formyl transferase, C-terminal domain VC395_0135 PF00551 Formyl transferase VC395_0136 PF01029 NusB family VC395_0136 PF01189 16S rRNA methyltransferase RsmB/F VC395_0137 PF02080 TrkA-C domain VC395_0137 PF02254 TrkA-N domain VC395_0138 PF02386 Cation transport protein VC395_0140 PF03006 Haemolysin-III related VC395_0141 PF07070 SpoOM protein VC395_0143 PF06288 Protein of unknown function (DUF1040) VC395_0144 PF13746 4Fe-4S dicluster domain VC395_0144 PF12801 4Fe-4S binding domain VC395_0144 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VC395_0145 PF01636 Phosphotransferase enzyme family VC395_0146 PF01323 DSBA-like thioredoxin domain VC395_0147 PF01553 Acyltransferase VC395_0148 PF01078 Magnesium chelatase, subunit ChlI VC395_0148 PF13335 Magnesium chelatase, subunit ChlI C-terminal VC395_0149 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VC395_0149 PF00205 Thiamine pyrophosphate enzyme, central domain VC395_0149 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VC395_0151 PF01063 Amino-transferase class IV VC395_0152 PF00920 Dehydratase family VC395_0153 PF00291 Pyridoxal-phosphate dependent enzyme VC395_0153 PF00585 C-terminal regulatory domain of Threonine dehydratase VC395_0154 PF08240 Alcohol dehydrogenase GroES-like domain VC395_0154 PF00107 Zinc-binding dehydrogenase VC395_0156 PF01206 Sulfurtransferase TusA VC395_0158 PF01169 Uncharacterized protein family UPF0016 VC395_0159 PF02091 Glycyl-tRNA synthetase alpha subunit VC395_0160 PF02092 Glycyl-tRNA synthetase beta subunit VC395_0160 PF05746 DALR anticodon binding domain VC395_0161 PF00155 Aminotransferase class I and II VC395_0162 PF00011 Hsp20/alpha crystallin family VC395_0165 PF00986 DNA gyrase B subunit, carboxyl terminus VC395_0165 PF00204 DNA gyrase B VC395_0165 PF18053 DNA gyrase B subunit insert domain VC395_0165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_0165 PF01751 Toprim domain VC395_0166 PF02463 RecF/RecN/SMC N terminal domain VC395_0167 PF00712 DNA polymerase III beta subunit, N-terminal domain VC395_0167 PF02768 DNA polymerase III beta subunit, C-terminal domain VC395_0167 PF02767 DNA polymerase III beta subunit, central domain VC395_0168 PF08299 Bacterial dnaA protein helix-turn-helix VC395_0168 PF11638 DnaA N-terminal domain VC395_0168 PF00308 Bacterial dnaA protein VC395_0170 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC395_0171 PF00528 Binding-protein-dependent transport system inner membrane component VC395_0172 PF00005 ABC transporter VC395_0173 PF00468 Ribosomal protein L34 VC395_0174 PF00825 Ribonuclease P VC395_0175 PF01809 Putative membrane protein insertion efficiency factor VC395_0176 PF14849 YidC periplasmic domain VC395_0176 PF02096 60Kd inner membrane protein VC395_0177 PF12631 MnmE helical domain VC395_0177 PF10396 GTP-binding protein TrmE N-terminus VC395_0177 PF01926 50S ribosome-binding GTPase VC395_0178 PF00258 Flavodoxin VC395_0180 PF01134 Glucose inhibited division protein A VC395_0180 PF13932 GidA associated domain VC395_0181 PF02527 rRNA small subunit methyltransferase G VC395_0182 PF13614 AAA domain VC395_0183 PF17762 HTH domain found in ParB protein VC395_0183 PF02195 ParB-like nuclease domain VC395_0184 PF03899 ATP synthase I chain VC395_0185 PF00119 ATP synthase A chain VC395_0186 PF00137 ATP synthase subunit C VC395_0187 PF00430 ATP synthase B/B' CF(0) VC395_0188 PF00213 ATP synthase delta (OSCP) subunit VC395_0189 PF00306 ATP synthase alpha/beta chain, C terminal domain VC395_0189 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VC395_0189 PF02874 ATP synthase alpha/beta family, beta-barrel domain VC395_0190 PF00231 ATP synthase VC395_0191 PF02874 ATP synthase alpha/beta family, beta-barrel domain VC395_0191 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VC395_0192 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VC395_0192 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VC395_0193 PF12804 MobA-like NTP transferase domain VC395_0193 PF00132 Bacterial transferase hexapeptide (six repeats) VC395_0194 PF07690 Major Facilitator Superfamily VC395_0195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_0195 PF03466 LysR substrate binding domain VC395_0196 PF00108 Thiolase, N-terminal domain VC395_0196 PF02803 Thiolase, C-terminal domain VC395_0197 PF00378 Enoyl-CoA hydratase/isomerase VC395_0197 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VC395_0197 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VC395_0198 PF01205 Uncharacterized protein family UPF0029 VC395_0198 PF09186 Domain of unknown function (DUF1949) VC395_0199 PF02386 Cation transport protein VC395_0200 PF12724 Flavodoxin domain VC395_0204 PF03466 LysR substrate binding domain VC395_0204 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_0205 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VC395_0205 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VC395_0206 PF04380 Membrane fusogenic activity VC395_0207 PF00873 AcrB/AcrD/AcrF family VC395_0208 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VC395_0209 PF00440 Bacterial regulatory proteins, tetR family VC395_0210 PF13361 UvrD-like helicase C-terminal domain VC395_0210 PF00580 UvrD/REP helicase N-terminal domain VC395_0211 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VC395_0213 PF00005 ABC transporter VC395_0213 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC395_0214 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VC395_0216 PF12911 N-terminal TM domain of oligopeptide transport permease C VC395_0216 PF00528 Binding-protein-dependent transport system inner membrane component VC395_0218 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC395_0218 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VC395_0219 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VC395_0220 PF01432 Peptidase family M3 VC395_0222 PF13361 UvrD-like helicase C-terminal domain VC395_0222 PF00580 UvrD/REP helicase N-terminal domain VC395_0223 PF01810 LysE type translocator VC395_0224 PF12833 Helix-turn-helix domain VC395_0227 PF00892 EamA-like transporter family VC395_0228 PF16124 RecQ zinc-binding VC395_0228 PF00570 HRDC domain VC395_0228 PF09382 RQC domain VC395_0228 PF00270 DEAD/DEAH box helicase VC395_0228 PF00271 Helicase conserved C-terminal domain VC395_0231 PF00005 ABC transporter VC395_0231 PF00664 ABC transporter transmembrane region VC395_0232 PF07715 TonB-dependent Receptor Plug Domain VC395_0232 PF00593 TonB dependent receptor VC395_0233 PF00005 ABC transporter VC395_0234 PF01497 Periplasmic binding protein VC395_0235 PF01032 FecCD transport family VC395_0236 PF01380 SIS domain VC395_0236 PF01418 Helix-turn-helix domain, rpiR family VC395_0238 PF13580 SIS domain VC395_0239 PF02378 Phosphotransferase system, EIIC VC395_0239 PF00367 phosphotransferase system, EIIB VC395_0240 PF03350 Uncharacterized protein family, UPF0114 VC395_0241 PF03755 YicC-like family, N-terminal region VC395_0241 PF08340 Domain of unknown function (DUF1732) VC395_0242 PF01138 3' exoribonuclease family, domain 1 VC395_0242 PF03725 3' exoribonuclease family, domain 2 VC395_0243 PF00156 Phosphoribosyl transferase domain VC395_0244 PF03279 Bacterial lipid A biosynthesis acyltransferase VC395_0245 PF03279 Bacterial lipid A biosynthesis acyltransferase VC395_0246 PF00440 Bacterial regulatory proteins, tetR family VC395_0247 PF02441 Flavoprotein VC395_0247 PF04127 DNA / pantothenate metabolism flavoprotein VC395_0248 PF02743 Cache domain VC395_0248 PF00672 HAMP domain VC395_0248 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_0249 PF04002 RadC-like JAB domain VC395_0250 PF00830 Ribosomal L28 family VC395_0251 PF00471 Ribosomal protein L33 VC395_0253 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VC395_0253 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VC395_0253 PF06827 Zinc finger found in FPG and IleRS VC395_0254 PF01467 Cytidylyltransferase-like VC395_0255 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VC395_0256 PF00535 Glycosyl transferase family 2 VC395_0257 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VC395_0265 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VC395_0266 PF04488 Glycosyltransferase sugar-binding region containing DXD motif VC395_0268 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VC395_0271 PF01522 Polysaccharide deacetylase VC395_0271 PF00457 Glycosyl hydrolases family 11 VC395_0272 PF01370 NAD dependent epimerase/dehydratase family VC395_0273 PF00483 Nucleotidyl transferase VC395_0273 PF01050 Mannose-6-phosphate isomerase VC395_0274 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VC395_0274 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VC395_0274 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VC395_0274 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VC395_0275 PF16363 GDP-mannose 4,6 dehydratase VC395_0276 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VC395_0279 PF00005 ABC transporter VC395_0279 PF14524 Wzt C-terminal domain VC395_0281 PF13193 AMP-binding enzyme C-terminal domain VC395_0281 PF00501 AMP-binding enzyme VC395_0282 PF00171 Aldehyde dehydrogenase family VC395_0282 PF00465 Iron-containing alcohol dehydrogenase VC395_0284 PF00132 Bacterial transferase hexapeptide (six repeats) VC395_0289 PF02719 Polysaccharide biosynthesis protein VC395_0291 PF01370 NAD dependent epimerase/dehydratase family VC395_0292 PF02397 Bacterial sugar transferase VC395_0293 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VC395_0293 PF00753 Metallo-beta-lactamase superfamily VC395_0293 PF10996 Beta-Casp domain VC395_0294 PF00924 Mechanosensitive ion channel VC395_0295 PF03167 Uracil DNA glycosylase superfamily VC395_0296 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VC395_0297 PF04222 Protein of unknown function (DUF416) VC395_0298 PF01238 Phosphomannose isomerase type I VC395_0299 PF00480 ROK family VC395_0300 PF01595 Cyclin M transmembrane N-terminal domain VC395_0300 PF00571 CBS domain VC395_0302 PF00216 Bacterial DNA-binding protein VC395_0304 PF02844 Phosphoribosylglycinamide synthetase, N domain VC395_0304 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VC395_0304 PF02843 Phosphoribosylglycinamide synthetase, C domain VC395_0305 PF01808 AICARFT/IMPCHase bienzyme VC395_0305 PF02142 MGS-like domain VC395_0306 PF13411 MerR HTH family regulatory protein VC395_0307 PF18500 CadC C-terminal domain 1 VC395_0307 PF00486 Transcriptional regulatory protein, C terminal VC395_0309 PF13520 Amino acid permease VC395_0310 PF01276 Orn/Lys/Arg decarboxylase, major domain VC395_0310 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VC395_0310 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VC395_0311 PF17200 Single Cache domain 2 VC395_0311 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_0311 PF00672 HAMP domain VC395_0313 PF07715 TonB-dependent Receptor Plug Domain VC395_0313 PF00593 TonB dependent receptor VC395_0314 PF01081 KDPG and KHG aldolase VC395_0315 PF02447 GntP family permease VC395_0316 PF01202 Shikimate kinase VC395_0317 PF00920 Dehydratase family VC395_0318 PF00356 Bacterial regulatory proteins, lacI family VC395_0318 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VC395_0320 PF02661 Fic/DOC family VC395_0320 PF13784 Fic/DOC family N-terminal VC395_0321 PF18019 HD domain VC395_0321 PF18395 Cas3 C-terminal domain VC395_0325 PF09344 CT1975-like protein VC395_0327 PF01867 CRISPR associated protein Cas1 VC395_0334 PF02954 Bacterial regulatory protein, Fis family VC395_0335 PF01207 Dihydrouridine synthase (Dus) VC395_0339 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VC395_0339 PF00289 Biotin carboxylase, N-terminal domain VC395_0339 PF02785 Biotin carboxylase C-terminal domain VC395_0340 PF00364 Biotin-requiring enzyme VC395_0341 PF01220 Dehydroquinase class II VC395_0342 PF13193 AMP-binding enzyme C-terminal domain VC395_0342 PF16177 Acetyl-coenzyme A synthetase N-terminus VC395_0342 PF00501 AMP-binding enzyme VC395_0346 PF12832 MFS_1 like family VC395_0347 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_0347 PF09456 RcsC Alpha-Beta-Loop (ABL) VC395_0347 PF00512 His Kinase A (phospho-acceptor) domain VC395_0347 PF00072 Response regulator receiver domain VC395_0348 PF02541 Ppx/GppA phosphatase family VC395_0349 PF00270 DEAD/DEAH box helicase VC395_0349 PF00271 Helicase conserved C-terminal domain VC395_0350 PF00085 Thioredoxin VC395_0351 PF07497 Rho termination factor, RNA-binding domain VC395_0351 PF07498 Rho termination factor, N-terminal domain VC395_0351 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VC395_0353 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VC395_0354 PF00111 2Fe-2S iron-sulfur cluster binding domain VC395_0354 PF00175 Oxidoreductase NAD-binding domain VC395_0354 PF00970 Oxidoreductase FAD-binding domain VC395_0355 PF00175 Oxidoreductase NAD-binding domain VC395_0358 PF13091 PLD-like domain VC395_0361 PF01565 FAD binding domain VC395_0361 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VC395_0362 PF03099 Biotin/lipoate A/B protein ligase family VC395_0362 PF02237 Biotin protein ligase C terminal domain VC395_0362 PF08279 HTH domain VC395_0363 PF00485 Phosphoribulokinase / Uridine kinase family VC395_0364 PF03144 Elongation factor Tu domain 2 VC395_0364 PF00009 Elongation factor Tu GTP binding domain VC395_0364 PF03143 Elongation factor Tu C-terminal domain VC395_0365 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VC395_0366 PF02357 Transcription termination factor nusG VC395_0366 PF00467 KOW motif VC395_0367 PF00298 Ribosomal protein L11, RNA binding domain VC395_0367 PF03946 Ribosomal protein L11, N-terminal domain VC395_0368 PF00687 Ribosomal protein L1p/L10e family VC395_0369 PF00466 Ribosomal protein L10 VC395_0370 PF00542 Ribosomal protein L7/L12 C-terminal domain VC395_0370 PF16320 Ribosomal protein L7/L12 dimerisation domain VC395_0371 PF00562 RNA polymerase Rpb2, domain 6 VC395_0371 PF10385 RNA polymerase beta subunit external 1 domain VC395_0371 PF04565 RNA polymerase Rpb2, domain 3 VC395_0371 PF04560 RNA polymerase Rpb2, domain 7 VC395_0371 PF04561 RNA polymerase Rpb2, domain 2 VC395_0371 PF04563 RNA polymerase beta subunit VC395_0372 PF04997 RNA polymerase Rpb1, domain 1 VC395_0372 PF00623 RNA polymerase Rpb1, domain 2 VC395_0372 PF04983 RNA polymerase Rpb1, domain 3 VC395_0372 PF05000 RNA polymerase Rpb1, domain 4 VC395_0372 PF04998 RNA polymerase Rpb1, domain 5 VC395_0373 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VC395_0374 PF00293 NUDIX domain VC395_0374 PF09297 NADH pyrophosphatase zinc ribbon domain VC395_0375 PF01208 Uroporphyrinogen decarboxylase (URO-D) VC395_0376 PF08360 QacR-like protein, C-terminal region VC395_0376 PF00440 Bacterial regulatory proteins, tetR family VC395_0378 PF01551 Peptidase family M23 VC395_0379 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VC395_0379 PF01676 Metalloenzyme superfamily VC395_0381 PF02080 TrkA-C domain VC395_0381 PF03600 Citrate transporter VC395_0382 PF02666 Phosphatidylserine decarboxylase VC395_0383 PF03193 RsgA GTPase VC395_0384 PF00929 Exonuclease VC395_0385 PF08331 Domain of unknown function (DUF1730) VC395_0386 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VC395_0387 PF01520 N-acetylmuramoyl-L-alanine amidase VC395_0388 PF01119 DNA mismatch repair protein, C-terminal domain VC395_0388 PF08676 MutL C terminal dimerisation domain VC395_0390 PF17209 Hfq protein VC395_0391 PF13167 GTP-binding GTPase N-terminal VC395_0391 PF01926 50S ribosome-binding GTPase VC395_0391 PF16360 GTP-binding GTPase Middle Region VC395_0392 PF01145 SPFH domain / Band 7 family VC395_0392 PF12221 Bacterial membrane protein N terminal VC395_0393 PF01145 SPFH domain / Band 7 family VC395_0394 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VC395_0395 PF04102 SlyX VC395_0397 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VC395_0397 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VC395_0398 PF13309 HTH domain VC395_0398 PF08348 YheO-like PAS domain VC395_0399 PF02635 DsrE/DsrF-like family VC395_0400 PF02635 DsrE/DsrF-like family VC395_0402 PF00164 Ribosomal protein S12/S23 VC395_0403 PF00177 Ribosomal protein S7p/S5e VC395_0404 PF00009 Elongation factor Tu GTP binding domain VC395_0404 PF03144 Elongation factor Tu domain 2 VC395_0404 PF03764 Elongation factor G, domain IV VC395_0404 PF14492 Elongation Factor G, domain II VC395_0404 PF00679 Elongation factor G C-terminus VC395_0405 PF03144 Elongation factor Tu domain 2 VC395_0405 PF03143 Elongation factor Tu C-terminal domain VC395_0405 PF00009 Elongation factor Tu GTP binding domain VC395_0407 PF04324 BFD-like [2Fe-2S] binding domain VC395_0408 PF00210 Ferritin-like domain VC395_0409 PF01250 Ribosomal protein S6 VC395_0410 PF00436 Single-strand binding protein family VC395_0411 PF01084 Ribosomal protein S18 VC395_0412 PF01281 Ribosomal protein L9, N-terminal domain VC395_0412 PF03948 Ribosomal protein L9, C-terminal domain VC395_0414 PF00772 DnaB-like helicase N terminal domain VC395_0414 PF03796 DnaB-like helicase C terminal domain VC395_0415 PF01168 Alanine racemase, N-terminal domain VC395_0415 PF00842 Alanine racemase, C-terminal domain VC395_0416 PF01894 Uncharacterised protein family UPF0047 VC395_0417 PF00342 Phosphoglucose isomerase VC395_0419 PF12706 Beta-lactamase superfamily domain VC395_0421 PF01475 Ferric uptake regulator family VC395_0422 PF01207 Dihydrouridine synthase (Dus) VC395_0424 PF09583 Phage shock protein G (Phageshock_PspG) VC395_0428 PF00175 Oxidoreductase NAD-binding domain VC395_0428 PF00667 FAD binding domain VC395_0428 PF00258 Flavodoxin VC395_0429 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VC395_0429 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VC395_0430 PF01507 Phosphoadenosine phosphosulfate reductase family VC395_0433 PF00999 Sodium/hydrogen exchanger family VC395_0434 PF02965 Vitamin B12 dependent methionine synthase, activation domain VC395_0434 PF02310 B12 binding domain VC395_0434 PF02607 B12 binding domain VC395_0434 PF00809 Pterin binding enzyme VC395_0434 PF02574 Homocysteine S-methyltransferase VC395_0435 PF01842 ACT domain VC395_0435 PF00696 Amino acid kinase family VC395_0436 PF00266 Aminotransferase class-V VC395_0438 PF00005 ABC transporter VC395_0438 PF17755 UvrA DNA-binding domain VC395_0438 PF17760 UvrA interaction domain VC395_0439 PF00483 Nucleotidyl transferase VC395_0440 PF00196 Bacterial regulatory proteins, luxR family VC395_0441 PF00436 Single-strand binding protein family VC395_0442 PF00563 EAL domain VC395_0442 PF00990 Diguanylate cyclase, GGDEF domain VC395_0442 PF17157 Gammaproteobacterial periplasmic sensor domain VC395_0446 PF11741 AMIN domain VC395_0446 PF00263 Bacterial type II and III secretion system protein VC395_0446 PF03958 Bacterial type II/III secretion system short domain VC395_0446 PF07660 Secretin and TonB N terminus short domain VC395_0447 PF13401 AAA domain VC395_0447 PF01471 Putative peptidoglycan binding domain VC395_0449 PF00437 Type II/IV secretion system protein VC395_0450 PF00482 Type II secretion system (T2SS), protein F VC395_0453 PF00114 Pilin (bacterial filament) VC395_0453 PF07963 Prokaryotic N-terminal methylation motif VC395_0460 PF04085 rod shape-determining protein MreC VC395_0461 PF04093 rod shape-determining protein MreD VC395_0462 PF02545 Maf-like protein VC395_0463 PF00575 S1 RNA binding domain VC395_0463 PF10150 Ribonuclease E/G family VC395_0464 PF13116 Protein of unknown function VC395_0464 PF13502 AsmA-like C-terminal region VC395_0465 PF00795 Carbon-nitrogen hydrolase VC395_0466 PF01523 Putative modulator of DNA gyrase VC395_0468 PF06877 Regulator of ribonuclease activity B VC395_0472 PF00582 Universal stress protein family VC395_0474 PF16868 NMT1-like family VC395_0475 PF01316 Arginine repressor, DNA binding domain VC395_0475 PF02863 Arginine repressor, C-terminal domain VC395_0476 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VC395_0476 PF00056 lactate/malate dehydrogenase, NAD binding domain VC395_0477 PF13520 Amino acid permease VC395_0478 PF00348 Polyprenyl synthetase VC395_0479 PF00829 Ribosomal prokaryotic L21 protein VC395_0480 PF01016 Ribosomal L27 protein VC395_0481 PF01018 GTP1/OBG VC395_0481 PF01926 50S ribosome-binding GTPase VC395_0482 PF06738 Putative threonine/serine exporter VC395_0483 PF12821 Threonine/Serine exporter, ThrE VC395_0484 PF00186 Dihydrofolate reductase VC395_0485 PF00149 Calcineurin-like phosphoesterase VC395_0486 PF04379 ApaG domain VC395_0487 PF00398 Ribosomal RNA adenine dimethylase VC395_0488 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VC395_0489 PF09312 SurA N-terminal domain VC395_0490 PF04453 LPS transport system D VC395_0490 PF03968 OstA-like protein VC395_0491 PF05099 Tellurite resistance protein TerB VC395_0491 PF00226 DnaJ domain VC395_0493 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_0493 PF00672 HAMP domain VC395_0493 PF12729 Four helix bundle sensory module for signal transduction VC395_0494 PF01464 Transglycosylase SLT domain VC395_0494 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VC395_0495 PF04362 Bacterial Fe(2+) trafficking VC395_0496 PF00730 HhH-GPD superfamily base excision DNA repair protein VC395_0496 PF10576 Iron-sulfur binding domain of endonuclease III VC395_0496 PF14815 NUDIX domain VC395_0496 PF00633 Helix-hairpin-helix motif VC395_0497 PF02390 Putative methyltransferase VC395_0498 PF04960 Glutaminase VC395_0499 PF04055 Radical SAM superfamily VC395_0499 PF06969 HemN C-terminal domain VC395_0500 PF01725 Ham1 family VC395_0502 PF02594 Uncharacterised ACR, YggU family COG1872 VC395_0503 PF02325 YGGT family VC395_0504 PF03807 NADP oxidoreductase coenzyme F420-dependent VC395_0504 PF14748 Pyrroline-5-carboxylate reductase dimerisation VC395_0505 PF01168 Alanine racemase, N-terminal domain VC395_0506 PF00437 Type II/IV secretion system protein VC395_0507 PF00437 Type II/IV secretion system protein VC395_0509 PF00579 tRNA synthetases class I (W and Y) VC395_0509 PF01479 S4 domain VC395_0510 PF03652 Holliday junction resolvase VC395_0511 PF02622 Uncharacterized ACR, COG1678 VC395_0512 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VC395_0512 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VC395_0513 PF04452 RNA methyltransferase VC395_0514 PF04231 Endonuclease I VC395_0515 PF10263 SprT-like family VC395_0515 PF17283 SprT-like zinc ribbon domain VC395_0516 PF02772 S-adenosylmethionine synthetase, central domain VC395_0516 PF02773 S-adenosylmethionine synthetase, C-terminal domain VC395_0516 PF00438 S-adenosylmethionine synthetase, N-terminal domain VC395_0517 PF02779 Transketolase, pyrimidine binding domain VC395_0517 PF02780 Transketolase, C-terminal domain VC395_0517 PF00456 Transketolase, thiamine diphosphate binding domain VC395_0518 PF03466 LysR substrate binding domain VC395_0518 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_0519 PF00593 TonB dependent receptor VC395_0519 PF07715 TonB-dependent Receptor Plug Domain VC395_0520 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC395_0520 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VC395_0521 PF00162 Phosphoglycerate kinase VC395_0522 PF01116 Fructose-bisphosphate aldolase class-II VC395_0524 PF05552 Conserved TM helix VC395_0524 PF00924 Mechanosensitive ion channel VC395_0525 PF01810 LysE type translocator VC395_0526 PF03466 LysR substrate binding domain VC395_0526 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_0527 PF04402 Protein of unknown function (DUF541) VC395_0529 PF02887 Pyruvate kinase, alpha/beta domain VC395_0529 PF00224 Pyruvate kinase, barrel domain VC395_0530 PF00455 DeoR C terminal sensor domain VC395_0530 PF08220 DeoR-like helix-turn-helix domain VC395_0531 PF01380 SIS domain VC395_0532 PF03480 Bacterial extracellular solute-binding protein, family 7 VC395_0534 PF04546 Sigma-70, non-essential region VC395_0534 PF03979 Sigma-70 factor, region 1.1 VC395_0534 PF00140 Sigma-70 factor, region 1.2 VC395_0534 PF04542 Sigma-70 region 2 VC395_0534 PF04539 Sigma-70 region 3 VC395_0534 PF04545 Sigma-70, region 4 VC395_0535 PF01807 CHC2 zinc finger VC395_0535 PF08275 DNA primase catalytic core, N-terminal domain VC395_0535 PF08278 DNA primase DnaG DnaB-binding VC395_0535 PF10410 DnaB-helicase binding domain of primase VC395_0536 PF09424 Yqey-like protein VC395_0537 PF01165 Ribosomal protein S21 VC395_0538 PF00814 Glycoprotease family VC395_0539 PF00561 alpha/beta hydrolase fold VC395_0540 PF02660 Glycerol-3-phosphate acyltransferase VC395_0541 PF02152 Dihydroneopterin aldolase VC395_0542 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VC395_0543 PF02673 Bacitracin resistance protein BacA VC395_0544 PF04977 Septum formation initiator VC395_0545 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VC395_0546 PF02542 YgbB family VC395_0547 PF01142 tRNA pseudouridine synthase D (TruD) VC395_0548 PF01975 Survival protein SurE VC395_0550 PF01476 LysM domain VC395_0550 PF01551 Peptidase family M23 VC395_0551 PF04539 Sigma-70 region 3 VC395_0551 PF00140 Sigma-70 factor, region 1.2 VC395_0551 PF04545 Sigma-70, region 4 VC395_0551 PF04542 Sigma-70 region 2 VC395_0552 PF05192 MutS domain III VC395_0552 PF05190 MutS family domain IV VC395_0552 PF00488 MutS domain V VC395_0552 PF01624 MutS domain I VC395_0552 PF05188 MutS domain II VC395_0554 PF00291 Pyridoxal-phosphate dependent enzyme VC395_0556 PF00528 Binding-protein-dependent transport system inner membrane component VC395_0557 PF00528 Binding-protein-dependent transport system inner membrane component VC395_0558 PF00005 ABC transporter VC395_0558 PF12857 TOBE-like domain VC395_0559 PF02464 Competence-damaged protein VC395_0560 PF00154 recA bacterial DNA recombination protein VC395_0561 PF02631 RecX family VC395_0562 PF02272 DHHA1 domain VC395_0562 PF01411 tRNA synthetases class II (A) VC395_0562 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VC395_0564 PF13840 ACT domain VC395_0564 PF01842 ACT domain VC395_0564 PF00696 Amino acid kinase family VC395_0565 PF02599 Global regulator protein family VC395_0566 PF04277 Oxaloacetate decarboxylase, gamma chain VC395_0567 PF02436 Conserved carboxylase domain VC395_0567 PF00364 Biotin-requiring enzyme VC395_0567 PF00682 HMGL-like VC395_0568 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VC395_0570 PF09335 SNARE associated Golgi protein VC395_0571 PF00675 Insulinase (Peptidase family M16) VC395_0571 PF05193 Peptidase M16 inactive domain VC395_0573 PF04262 Glutamate-cysteine ligase VC395_0574 PF02664 S-Ribosylhomocysteinase (LuxS) VC395_0575 PF01595 Cyclin M transmembrane N-terminal domain VC395_0575 PF03471 Transporter associated domain VC395_0575 PF00571 CBS domain VC395_0576 PF01578 Cytochrome C assembly protein VC395_0577 PF00448 SRP54-type protein, GTPase domain VC395_0577 PF02978 Signal peptide binding domain VC395_0577 PF02881 SRP54-type protein, helical bundle domain VC395_0578 PF00886 Ribosomal protein S16 VC395_0579 PF01782 RimM N-terminal domain VC395_0579 PF05239 PRC-barrel domain VC395_0580 PF01746 tRNA (Guanine-1)-methyltransferase VC395_0581 PF01245 Ribosomal protein L19 VC395_0582 PF13180 PDZ domain VC395_0583 PF00595 PDZ domain VC395_0585 PF03969 AFG1-like ATPase VC395_0587 PF00572 Ribosomal protein L13 VC395_0588 PF00380 Ribosomal protein S9/S16 VC395_0590 PF00355 Rieske [2Fe-2S] domain VC395_0590 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VC395_0591 PF00033 Cytochrome b/b6/petB VC395_0591 PF00032 Cytochrome b(C-terminal)/b6/petD VC395_0592 PF02167 Cytochrome C1 family VC395_0593 PF00043 Glutathione S-transferase, C-terminal domain VC395_0593 PF02798 Glutathione S-transferase, N-terminal domain VC395_0594 PF04386 Stringent starvation protein B VC395_0595 PF04972 BON domain VC395_0596 PF13580 SIS domain VC395_0597 PF02021 Uncharacterised protein family UPF0102 VC395_0598 PF04348 LppC putative lipoprotein VC395_0599 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VC395_0600 PF00440 Bacterial regulatory proteins, tetR family VC395_0602 PF00156 Phosphoribosyl transferase domain VC395_0603 PF00484 Carbonic anhydrase VC395_0604 PF00916 Sulfate permease family VC395_0604 PF01740 STAS domain VC395_0606 PF00005 ABC transporter VC395_0607 PF01061 ABC-2 type transporter VC395_0608 PF02569 Pantoate-beta-alanine ligase VC395_0609 PF02548 Ketopantoate hydroxymethyltransferase VC395_0610 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VC395_0611 PF12627 Probable RNA and SrmB- binding site of polymerase A VC395_0611 PF01743 Poly A polymerase head domain VC395_0611 PF12626 Polymerase A arginine-rich C-terminus VC395_0612 PF00749 tRNA synthetases class I (E and Q), catalytic domain VC395_0613 PF01258 Prokaryotic dksA/traR C4-type zinc finger VC395_0614 PF17746 SfsA N-terminal OB domain VC395_0614 PF03749 Sugar fermentation stimulation protein RE domain VC395_0618 PF00270 DEAD/DEAH box helicase VC395_0618 PF04408 Helicase associated domain (HA2) VC395_0618 PF08482 ATP-dependent helicase C-terminal VC395_0618 PF00271 Helicase conserved C-terminal domain VC395_0619 PF14814 Bifunctional transglycosylase second domain VC395_0619 PF00905 Penicillin binding protein transpeptidase domain VC395_0619 PF00912 Transglycosylase VC395_0620 PF01734 Patatin-like phospholipase VC395_0621 PF11791 Aconitate B N-terminal domain VC395_0621 PF00330 Aconitase family (aconitate hydratase) VC395_0621 PF06434 Aconitate hydratase 2 N-terminus VC395_0622 PF06062 Uncharacterised protein family (UPF0231) VC395_0623 PF00543 Nitrogen regulatory protein P-II VC395_0624 PF00909 Ammonium Transporter Family VC395_0625 PF13416 Bacterial extracellular solute-binding protein VC395_0627 PF08402 TOBE domain VC395_0627 PF00005 ABC transporter VC395_0628 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VC395_0628 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VC395_0628 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VC395_0629 PF06165 Glycosyltransferase family 36 VC395_0629 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VC395_0630 PF00728 Glycosyl hydrolase family 20, catalytic domain VC395_0630 PF02838 Glycosyl hydrolase family 20, domain 2 VC395_0631 PF01869 BadF/BadG/BcrA/BcrD ATPase family VC395_0633 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC395_0633 PF00005 ABC transporter VC395_0634 PF00005 ABC transporter VC395_0634 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC395_0635 PF12911 N-terminal TM domain of oligopeptide transport permease C VC395_0635 PF00528 Binding-protein-dependent transport system inner membrane component VC395_0636 PF00528 Binding-protein-dependent transport system inner membrane component VC395_0637 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VC395_0639 PF00072 Response regulator receiver domain VC395_0639 PF09308 LuxQ, periplasmic VC395_0639 PF00512 His Kinase A (phospho-acceptor) domain VC395_0639 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_0640 PF08468 Methyltransferase small domain N-terminal VC395_0640 PF05175 Methyltransferase small domain VC395_0641 PF01594 AI-2E family transporter VC395_0643 PF00202 Aminotransferase class-III VC395_0644 PF01521 Iron-sulphur cluster biosynthesis VC395_0646 PF00873 AcrB/AcrD/AcrF family VC395_0647 PF04225 Opacity-associated protein A LysM-like domain VC395_0647 PF01551 Peptidase family M23 VC395_0648 PF01479 S4 domain VC395_0648 PF00579 tRNA synthetases class I (W and Y) VC395_0649 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VC395_0650 PF13609 Gram-negative porin VC395_0651 PF03449 Transcription elongation factor, N-terminal VC395_0651 PF01272 Transcription elongation factor, GreA/GreB, C-term VC395_0652 PF01985 CRS1 / YhbY (CRM) domain VC395_0653 PF01728 FtsJ-like methyltransferase VC395_0654 PF00004 ATPase family associated with various cellular activities (AAA) VC395_0654 PF01434 Peptidase family M41 VC395_0654 PF17862 AAA+ lid domain VC395_0654 PF06480 FtsH Extracellular VC395_0655 PF00809 Pterin binding enzyme VC395_0656 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VC395_0656 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VC395_0656 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VC395_0656 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VC395_0657 PF03840 Preprotein translocase SecG subunit VC395_0658 PF02576 RimP N-terminal domain VC395_0658 PF17384 RimP C-terminal SH3 domain VC395_0659 PF13184 NusA-like KH domain VC395_0659 PF08529 NusA N-terminal domain VC395_0659 PF00575 S1 RNA binding domain VC395_0660 PF11987 Translation-initiation factor 2 VC395_0660 PF00009 Elongation factor Tu GTP binding domain VC395_0660 PF04760 Translation initiation factor IF-2, N-terminal region VC395_0660 PF08364 Bacterial translation initiation factor IF-2 associated region VC395_0661 PF02033 Ribosome-binding factor A VC395_0662 PF09157 Pseudouridine synthase II TruB, C-terminal VC395_0662 PF16198 tRNA pseudouridylate synthase B C-terminal domain VC395_0662 PF01509 TruB family pseudouridylate synthase (N terminal domain) VC395_0663 PF00312 Ribosomal protein S15 VC395_0664 PF00575 S1 RNA binding domain VC395_0664 PF03725 3' exoribonuclease family, domain 2 VC395_0664 PF01138 3' exoribonuclease family, domain 1 VC395_0664 PF00013 KH domain VC395_0664 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VC395_0665 PF07719 Tetratricopeptide repeat VC395_0665 PF13181 Tetratricopeptide repeat VC395_0670 PF00563 EAL domain VC395_0670 PF03707 Bacterial signalling protein N terminal repeat VC395_0670 PF00990 Diguanylate cyclase, GGDEF domain VC395_0672 PF13508 Acetyltransferase (GNAT) domain VC395_0675 PF00563 EAL domain VC395_0675 PF00990 Diguanylate cyclase, GGDEF domain VC395_0675 PF03707 Bacterial signalling protein N terminal repeat VC395_0676 PF00009 Elongation factor Tu GTP binding domain VC395_0676 PF03144 Elongation factor Tu domain 2 VC395_0676 PF16658 Class II release factor RF3, C-terminal domain VC395_0677 PF00270 DEAD/DEAH box helicase VC395_0677 PF00271 Helicase conserved C-terminal domain VC395_0678 PF05175 Methyltransferase small domain VC395_0679 PF05525 Branched-chain amino acid transport protein VC395_0680 PF03462 PCRF domain VC395_0680 PF00472 RF-1 domain VC395_0681 PF01336 OB-fold nucleic acid binding domain VC395_0681 PF00152 tRNA synthetases class II (D, K and N) VC395_0682 PF00072 Response regulator receiver domain VC395_0682 PF02954 Bacterial regulatory protein, Fis family VC395_0682 PF00158 Sigma-54 interaction domain VC395_0684 PF00248 Aldo/keto reductase family VC395_0685 PF02976 DNA mismatch repair enzyme MutH VC395_0688 PF00293 NUDIX domain VC395_0689 PF02896 PEP-utilising enzyme, TIM barrel domain VC395_0689 PF00391 PEP-utilising enzyme, mobile domain VC395_0689 PF05524 PEP-utilising enzyme, N-terminal VC395_0689 PF01590 GAF domain VC395_0690 PF01925 Sulfite exporter TauE/SafE VC395_0691 PF01790 Prolipoprotein diacylglyceryl transferase VC395_0692 PF00303 Thymidylate synthase VC395_0693 PF02690 Na+/Pi-cotransporter VC395_0694 PF03466 LysR substrate binding domain VC395_0694 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_0695 PF01022 Bacterial regulatory protein, arsR family VC395_0696 PF01649 Ribosomal protein S20 VC395_0697 PF03023 Lipid II flippase MurJ VC395_0698 PF01687 Riboflavin kinase VC395_0698 PF06574 FAD synthetase VC395_0699 PF08264 Anticodon-binding domain of tRNA VC395_0699 PF06827 Zinc finger found in FPG and IleRS VC395_0699 PF00133 tRNA synthetases class I (I, L, M and V) VC395_0700 PF01252 Signal peptidase (SPase) II VC395_0701 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VC395_0702 PF02401 LytB protein VC395_0704 PF02554 Carbon starvation protein CstA VC395_0707 PF13580 SIS domain VC395_0708 PF03702 Anhydro-N-acetylmuramic acid kinase VC395_0709 PF00933 Glycosyl hydrolase family 3 N terminal domain VC395_0710 PF04397 LytTr DNA-binding domain VC395_0710 PF00072 Response regulator receiver domain VC395_0711 PF06580 Histidine kinase VC395_0711 PF07694 5TMR of 5TMR-LYT VC395_0712 PF00793 DAHP synthetase I family VC395_0713 PF02153 Prephenate dehydrogenase VC395_0713 PF01817 Chorismate mutase type II VC395_0714 PF07238 PilZ domain VC395_0715 PF00005 ABC transporter VC395_0715 PF12848 ABC transporter VC395_0717 PF14718 Soluble lytic murein transglycosylase L domain VC395_0717 PF01464 Transglycosylase SLT domain VC395_0718 PF01371 Trp repressor protein VC395_0719 PF01931 Protein of unknown function DUF84 VC395_0720 PF00563 EAL domain VC395_0720 PF00990 Diguanylate cyclase, GGDEF domain VC395_0721 PF13416 Bacterial extracellular solute-binding protein VC395_0722 PF01817 Chorismate mutase type II VC395_0722 PF00800 Prephenate dehydratase VC395_0723 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VC395_0725 PF13525 Outer membrane lipoprotein VC395_0726 PF00849 RNA pseudouridylate synthase VC395_0726 PF01479 S4 domain VC395_0728 PF10431 C-terminal, D2-small domain, of ClpB protein VC395_0728 PF00004 ATPase family associated with various cellular activities (AAA) VC395_0728 PF07724 AAA domain (Cdc48 subfamily) VC395_0728 PF17871 AAA lid domain VC395_0728 PF02861 Clp amino terminal domain, pathogenicity island component VC395_0732 PF00881 Nitroreductase family VC395_0733 PF00037 4Fe-4S binding domain VC395_0735 PF04381 Putative exonuclease, RdgC VC395_0736 PF00072 Response regulator receiver domain VC395_0736 PF00486 Transcriptional regulatory protein, C terminal VC395_0737 PF11808 Phosphate regulon sensor protein PhoR VC395_0737 PF00989 PAS fold VC395_0737 PF00512 His Kinase A (phospho-acceptor) domain VC395_0737 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_0738 PF12849 PBP superfamily domain VC395_0739 PF02541 Ppx/GppA phosphatase family VC395_0740 PF13090 Polyphosphate kinase C-terminal domain 2 VC395_0740 PF17941 Polyphosphate kinase C-terminal domain 1 VC395_0740 PF13089 Polyphosphate kinase N-terminal domain VC395_0740 PF02503 Polyphosphate kinase middle domain VC395_0741 PF00528 Binding-protein-dependent transport system inner membrane component VC395_0742 PF00528 Binding-protein-dependent transport system inner membrane component VC395_0743 PF00005 ABC transporter VC395_0744 PF01895 PhoU domain VC395_0745 PF03976 Polyphosphate kinase 2 (PPK2) VC395_0747 PF03932 CutC family VC395_0748 PF10417 C-terminal domain of 1-Cys peroxiredoxin VC395_0748 PF00578 AhpC/TSA family VC395_0749 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_0749 PF03466 LysR substrate binding domain VC395_0751 PF01274 Malate synthase VC395_0753 PF00463 Isocitrate lyase family VC395_0754 PF00571 CBS domain VC395_0756 PF02547 Queuosine biosynthesis protein VC395_0758 PF01702 Queuine tRNA-ribosyltransferase VC395_0759 PF02699 Preprotein translocase subunit VC395_0760 PF13721 SecD export protein N-terminal TM region VC395_0760 PF07549 SecD/SecF GG Motif VC395_0760 PF02355 Protein export membrane protein VC395_0761 PF02355 Protein export membrane protein VC395_0761 PF07549 SecD/SecF GG Motif VC395_0762 PF00459 Inositol monophosphatase family VC395_0763 PF00588 SpoU rRNA Methylase family VC395_0764 PF02082 Transcriptional regulator VC395_0765 PF00266 Aminotransferase class-V VC395_0766 PF01592 NifU-like N terminal domain VC395_0767 PF01521 Iron-sulphur cluster biosynthesis VC395_0768 PF00226 DnaJ domain VC395_0768 PF07743 HSCB C-terminal oligomerisation domain VC395_0769 PF00012 Hsp70 protein VC395_0770 PF00111 2Fe-2S iron-sulfur cluster binding domain VC395_0771 PF04384 Iron-sulphur cluster assembly VC395_0772 PF00883 Cytosol aminopeptidase family, catalytic domain VC395_0772 PF12404 Peptidase VC395_0773 PF00334 Nucleoside diphosphate kinase VC395_0774 PF04055 Radical SAM superfamily VC395_0775 PF13464 Domain of unknown function (DUF4115) VC395_0776 PF04551 GcpE protein VC395_0777 PF13393 Histidyl-tRNA synthetase VC395_0777 PF03129 Anticodon binding domain VC395_0778 PF09976 Tetratricopeptide repeat-like domain VC395_0779 PF13360 PQQ-like domain VC395_0780 PF01926 50S ribosome-binding GTPase VC395_0780 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VC395_0783 PF02601 Exonuclease VII, large subunit VC395_0783 PF13742 OB-fold nucleic acid binding domain VC395_0784 PF00571 CBS domain VC395_0784 PF00478 IMP dehydrogenase / GMP reductase domain VC395_0785 PF00117 Glutamine amidotransferase class-I VC395_0785 PF02540 NAD synthase VC395_0785 PF00958 GMP synthase C terminal domain VC395_0786 PF00704 Glycosyl hydrolases family 18 VC395_0786 PF06483 Chitinase C VC395_0787 PF01184 GPR1/FUN34/yaaH family VC395_0788 PF00550 Phosphopantetheine attachment site VC395_0788 PF00857 Isochorismatase family VC395_0789 PF13193 AMP-binding enzyme C-terminal domain VC395_0789 PF00501 AMP-binding enzyme VC395_0790 PF00425 chorismate binding enzyme VC395_0793 PF01497 Periplasmic binding protein VC395_0794 PF01032 FecCD transport family VC395_0795 PF01032 FecCD transport family VC395_0796 PF00005 ABC transporter VC395_0797 PF17837 4'-phosphopantetheinyl transferase N-terminal domain VC395_0797 PF01648 4'-phosphopantetheinyl transferase superfamily VC395_0798 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_0798 PF03466 LysR substrate binding domain VC395_0800 PF00753 Metallo-beta-lactamase superfamily VC395_0800 PF14864 Alkyl sulfatase C-terminal VC395_0800 PF14863 Alkyl sulfatase dimerisation VC395_0801 PF01235 Sodium:alanine symporter family VC395_0803 PF01266 FAD dependent oxidoreductase VC395_0804 PF03466 LysR substrate binding domain VC395_0804 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_0807 PF12431 Transcriptional regulator VC395_0807 PF00072 Response regulator receiver domain VC395_0808 PF17203 Single cache domain 3 VC395_0808 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_0809 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VC395_0810 PF00364 Biotin-requiring enzyme VC395_0810 PF00682 HMGL-like VC395_0810 PF02436 Conserved carboxylase domain VC395_0811 PF04277 Oxaloacetate decarboxylase, gamma chain VC395_0812 PF03390 2-hydroxycarboxylate transporter family VC395_0813 PF08218 Citrate lyase ligase C-terminal domain VC395_0814 PF06857 Malonate decarboxylase delta subunit (MdcD) VC395_0815 PF03328 HpcH/HpaI aldolase/citrate lyase family VC395_0816 PF04223 Citrate lyase, alpha subunit (CitF) VC395_0817 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase VC395_0818 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase VC395_0820 PF00588 SpoU rRNA Methylase family VC395_0820 PF08032 RNA 2'-O ribose methyltransferase substrate binding VC395_0821 PF00037 4Fe-4S binding domain VC395_0821 PF11953 Domain of unknown function (DUF3470) VC395_0836 PF00171 Aldehyde dehydrogenase family VC395_0837 PF00041 Fibronectin type III domain VC395_0837 PF12561 ToxR activated gene A lipoprotein domain VC395_0840 PF08534 Redoxin VC395_0841 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_0842 PF00486 Transcriptional regulatory protein, C terminal VC395_0844 PF07963 Prokaryotic N-terminal methylation motif VC395_0844 PF05946 Toxin-coregulated pilus subunit TcpA VC395_0846 PF10671 Toxin co-regulated pilus biosynthesis protein Q VC395_0850 PF17456 Toxin-coregulated pilus protein S VC395_0851 PF00437 Type II/IV secretion system protein VC395_0852 PF00482 Type II secretion system (T2SS), protein F VC395_0853 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F VC395_0854 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family VC395_0855 PF06750 Bacterial Peptidase A24 N-terminal domain VC395_0855 PF01478 Type IV leader peptidase family VC395_0856 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_0856 PF00672 HAMP domain VC395_0856 PF02743 Cache domain VC395_0859 PF04225 Opacity-associated protein A LysM-like domain VC395_0859 PF01551 Peptidase family M23 VC395_0861 PF13402 Peptidase M60, enhancin and enhancin-like VC395_0861 PF13322 Domain of unknown function (DUF4092) VC395_0861 PF17291 N-terminal domain of M60-like peptidases VC395_0863 PF00589 Phage integrase family VC395_0863 PF13356 Arm DNA-binding domain VC395_0864 PF01668 SmpB protein VC395_0865 PF03364 Polyketide cyclase / dehydrase and lipid transport VC395_0866 PF03658 RnfH family Ubiquitin VC395_0867 PF04355 SmpA / OmlA family VC395_0868 PF02463 RecF/RecN/SMC N terminal domain VC395_0869 PF01513 ATP-NAD kinase VC395_0870 PF01025 GrpE VC395_0871 PF00012 Hsp70 protein VC395_0872 PF00684 DnaJ central domain VC395_0872 PF00226 DnaJ domain VC395_0872 PF01556 DnaJ C terminal domain VC395_0873 PF00114 Pilin (bacterial filament) VC395_0873 PF07963 Prokaryotic N-terminal methylation motif VC395_0874 PF07963 Prokaryotic N-terminal methylation motif VC395_0874 PF14245 Type IV pilin PilA VC395_0879 PF03806 AbgT putative transporter family VC395_0880 PF14437 MafB19-like deaminase VC395_0882 PF01464 Transglycosylase SLT domain VC395_0882 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC395_0885 PF02769 AIR synthase related protein, C-terminal domain VC395_0885 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VC395_0885 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VC395_0886 PF01797 Transposase IS200 like VC395_0888 PF06786 Uncharacterised protein family (UPF0253) VC395_0891 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VC395_0891 PF04073 Aminoacyl-tRNA editing domain VC395_0891 PF03129 Anticodon binding domain VC395_0892 PF18389 TrmO C-terminal domain VC395_0892 PF01980 tRNA-methyltransferase O VC395_0894 PF01197 Ribosomal protein L31 VC395_0895 PF00444 Ribosomal protein L36 VC395_0896 PF03806 AbgT putative transporter family VC395_0897 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VC395_0900 PF13302 Acetyltransferase (GNAT) domain VC395_0903 PF04287 tRNA pseudouridine synthase C VC395_0904 PF00849 RNA pseudouridylate synthase VC395_0905 PF02780 Transketolase, C-terminal domain VC395_0905 PF02779 Transketolase, pyrimidine binding domain VC395_0905 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VC395_0906 PF00348 Polyprenyl synthetase VC395_0907 PF02609 Exonuclease VII small subunit VC395_0908 PF01618 MotA/TolQ/ExbB proton channel family VC395_0909 PF00691 OmpA family VC395_0909 PF13677 Membrane MotB of proton-channel complex MotA/MotB VC395_0910 PF02568 Thiamine biosynthesis protein (ThiI) VC395_0910 PF02926 THUMP domain VC395_0912 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_0912 PF03466 LysR substrate binding domain VC395_0913 PF04241 Protein of unknown function (DUF423) VC395_0914 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VC395_0914 PF01367 5'-3' exonuclease, C-terminal SAM fold VC395_0915 PF03641 Possible lysine decarboxylase VC395_0915 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VC395_0915 PF11892 Domain of unknown function (DUF3412) VC395_0916 PF00990 Diguanylate cyclase, GGDEF domain VC395_0918 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VC395_0918 PF14489 QueF-like protein VC395_0919 PF07348 Syd protein (SUKH-2) VC395_0920 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VC395_0921 PF03180 NLPA lipoprotein VC395_0922 PF00528 Binding-protein-dependent transport system inner membrane component VC395_0923 PF09383 NIL domain VC395_0923 PF00005 ABC transporter VC395_0925 PF00356 Bacterial regulatory proteins, lacI family VC395_0926 PF00367 phosphotransferase system, EIIB VC395_0926 PF02378 Phosphotransferase system, EIIC VC395_0927 PF00128 Alpha amylase, catalytic domain VC395_0927 PF16657 Maltogenic Amylase, C-terminal domain VC395_0929 PF13533 Biotin-lipoyl like VC395_0930 PF00873 AcrB/AcrD/AcrF family VC395_0932 PF01451 Low molecular weight phosphotyrosine protein phosphatase VC395_0933 PF02350 UDP-N-acetylglucosamine 2-epimerase VC395_0934 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VC395_0934 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VC395_0934 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VC395_0935 PF12464 Maltose acetyltransferase VC395_0935 PF14602 Hexapeptide repeat of succinyl-transferase VC395_0939 PF00132 Bacterial transferase hexapeptide (six repeats) VC395_0941 PF00862 Sucrose synthase VC395_0941 PF00534 Glycosyl transferases group 1 VC395_0943 PF03808 Glycosyl transferase WecB/TagA/CpsF family VC395_0946 PF17945 Beta/Gamma crystallin VC395_0946 PF12561 ToxR activated gene A lipoprotein domain VC395_0949 PF02397 Bacterial sugar transferase VC395_0951 PF02563 Polysaccharide biosynthesis/export protein VC395_0951 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VC395_0951 PF10531 SLBB domain VC395_0952 PF13807 G-rich domain on putative tyrosine kinase VC395_0952 PF02706 Chain length determinant protein VC395_0952 PF13614 AAA domain VC395_0956 PF00464 Serine hydroxymethyltransferase VC395_0958 PF04055 Radical SAM superfamily VC395_0958 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VC395_0959 PF03099 Biotin/lipoate A/B protein ligase family VC395_0960 PF04359 Protein of unknown function (DUF493) VC395_0962 PF00768 D-alanyl-D-alanine carboxypeptidase VC395_0962 PF07943 Penicillin-binding protein 5, C-terminal domain VC395_0963 PF05036 Sporulation related domain VC395_0963 PF03330 Lytic transglycolase VC395_0964 PF01098 Cell cycle protein VC395_0965 PF03717 Penicillin-binding Protein dimerisation domain VC395_0965 PF00905 Penicillin binding protein transpeptidase domain VC395_0966 PF02590 Predicted SPOUT methyltransferase VC395_0968 PF06144 DNA polymerase III, delta subunit VC395_0968 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VC395_0969 PF04390 Lipopolysaccharide-assembly VC395_0971 PF13603 Leucyl-tRNA synthetase, Domain 2 VC395_0971 PF00133 tRNA synthetases class I (I, L, M and V) VC395_0971 PF08264 Anticodon-binding domain of tRNA VC395_0972 PF07295 Zinc-ribbon containing domain VC395_0973 PF00795 Carbon-nitrogen hydrolase VC395_0974 PF00571 CBS domain VC395_0974 PF03471 Transporter associated domain VC395_0975 PF02130 Uncharacterized protein family UPF0054 VC395_0976 PF02562 PhoH-like protein VC395_0977 PF00919 Uncharacterized protein family UPF0004 VC395_0977 PF04055 Radical SAM superfamily VC395_0977 PF01938 TRAM domain VC395_0978 PF01494 FAD binding domain VC395_0979 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VC395_0980 PF00391 PEP-utilising enzyme, mobile domain VC395_0980 PF05524 PEP-utilising enzyme, N-terminal VC395_0980 PF02896 PEP-utilising enzyme, TIM barrel domain VC395_0981 PF00381 PTS HPr component phosphorylation site VC395_0983 PF00291 Pyridoxal-phosphate dependent enzyme VC395_0985 PF04354 ZipA, C-terminal FtsZ-binding domain VC395_0986 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VC395_0986 PF12826 Helix-hairpin-helix motif VC395_0986 PF03120 NAD-dependent DNA ligase OB-fold domain VC395_0986 PF01653 NAD-dependent DNA ligase adenylation domain VC395_0986 PF00533 BRCA1 C Terminus (BRCT) domain VC395_0987 PF13609 Gram-negative porin VC395_0989 PF13411 MerR HTH family regulatory protein VC395_0990 PF01957 NfeD-like C-terminal, partner-binding VC395_0991 PF01145 SPFH domain / Band 7 family VC395_0991 PF16200 C-terminal region of band_7 VC395_0992 PF00085 Thioredoxin VC395_0994 PF00106 short chain dehydrogenase VC395_0995 PF01370 NAD dependent epimerase/dehydratase family VC395_0995 PF08338 Domain of unknown function (DUF1731) VC395_0996 PF12850 Calcineurin-like phosphoesterase superfamily domain VC395_0998 PF17323 Trans-membrane regulatory protein ToxS VC395_0999 PF00486 Transcriptional regulatory protein, C terminal VC395_1000 PF00183 Hsp90 protein VC395_1000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1001 PF05191 Adenylate kinase, active site lid VC395_1002 PF00762 Ferrochelatase VC395_1003 PF00854 POT family VC395_1005 PF02357 Transcription termination factor nusG VC395_1006 PF00733 Asparagine synthase VC395_1006 PF13537 Glutamine amidotransferase domain VC395_1007 PF02254 TrkA-N domain VC395_1007 PF00999 Sodium/hydrogen exchanger family VC395_1008 PF00480 ROK family VC395_1008 PF01047 MarR family VC395_1009 PF01979 Amidohydrolase family VC395_1010 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VC395_1010 PF00367 phosphotransferase system, EIIB VC395_1010 PF02378 Phosphotransferase system, EIIC VC395_1012 PF00749 tRNA synthetases class I (E and Q), catalytic domain VC395_1012 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VC395_1014 PF01416 tRNA pseudouridine synthase VC395_1015 PF17848 Acetyl-coA carboxylase zinc finger domain VC395_1015 PF01039 Carboxyl transferase domain VC395_1016 PF08245 Mur ligase middle domain VC395_1016 PF02875 Mur ligase family, glutamate ligase domain VC395_1017 PF05036 Sporulation related domain VC395_1018 PF02674 Colicin V production protein VC395_1019 PF00156 Phosphoribosyl transferase domain VC395_1020 PF03553 Na+/H+ antiporter family VC395_1020 PF13726 Na+-H+ antiporter family VC395_1021 PF00929 Exonuclease VC395_1023 PF00691 OmpA family VC395_1023 PF18393 MotY N-terminal domain VC395_1024 PF10952 Protein of unknown function (DUF2753) VC395_1025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VC395_1026 PF10576 Iron-sulfur binding domain of endonuclease III VC395_1026 PF00730 HhH-GPD superfamily base excision DNA repair protein VC395_1026 PF00633 Helix-hairpin-helix motif VC395_1027 PF02508 Rnf-Nqr subunit, membrane protein VC395_1028 PF04205 FMN-binding domain VC395_1029 PF03116 NQR2, RnfD, RnfE family VC395_1030 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VC395_1030 PF12838 4Fe-4S dicluster domain VC395_1030 PF13375 RnfC Barrel sandwich hybrid domain VC395_1030 PF10531 SLBB domain VC395_1031 PF04060 Putative Fe-S cluster VC395_1032 PF02508 Rnf-Nqr subunit, membrane protein VC395_1033 PF00271 Helicase conserved C-terminal domain VC395_1033 PF04851 Type III restriction enzyme, res subunit VC395_1033 PF12344 Ultra-violet resistance protein B VC395_1033 PF02151 UvrB/uvrC motif VC395_1033 PF17757 UvrB interaction domain VC395_1035 PF00072 Response regulator receiver domain VC395_1035 PF02954 Bacterial regulatory protein, Fis family VC395_1035 PF00158 Sigma-54 interaction domain VC395_1036 PF01627 Hpt domain VC395_1037 PF01933 Uncharacterised protein family UPF0052 VC395_1038 PF04055 Radical SAM superfamily VC395_1038 PF06463 Molybdenum Cofactor Synthesis C VC395_1039 PF00994 Probable molybdopterin binding domain VC395_1040 PF01967 MoaC family VC395_1041 PF02597 ThiS family VC395_1042 PF02391 MoaE protein VC395_1043 PF07694 5TMR of 5TMR-LYT VC395_1043 PF00990 Diguanylate cyclase, GGDEF domain VC395_1045 PF07085 DRTGG domain VC395_1045 PF00571 CBS domain VC395_1045 PF03061 Thioesterase superfamily VC395_1045 PF00392 Bacterial regulatory proteins, gntR family VC395_1047 PF00403 Heavy-metal-associated domain VC395_1048 PF01048 Phosphorylase superfamily VC395_1050 PF01588 Putative tRNA binding domain VC395_1050 PF09334 tRNA synthetases class I (M) VC395_1051 PF10609 NUBPL iron-transfer P-loop NTPase VC395_1052 PF00485 Phosphoribulokinase / Uridine kinase family VC395_1053 PF05170 AsmA family VC395_1054 PF12557 Cob(I)alamin adenosyltransferase N terminal VC395_1054 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VC395_1055 PF01451 Low molecular weight phosphotyrosine protein phosphatase VC395_1056 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VC395_1057 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VC395_1059 PF08281 Sigma-70, region 4 VC395_1059 PF04542 Sigma-70 region 2 VC395_1060 PF02803 Thiolase, C-terminal domain VC395_1060 PF00108 Thiolase, N-terminal domain VC395_1061 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VC395_1061 PF00378 Enoyl-CoA hydratase/isomerase VC395_1061 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VC395_1062 PF00881 Nitroreductase family VC395_1063 PF03466 LysR substrate binding domain VC395_1063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_1064 PF00072 Response regulator receiver domain VC395_1066 PF04304 Protein of unknown function (DUF454) VC395_1067 PF00156 Phosphoribosyl transferase domain VC395_1068 PF12169 DNA polymerase III subunits gamma and tau domain III VC395_1068 PF12170 DNA polymerase III tau subunit V interacting with alpha VC395_1068 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VC395_1069 PF02575 YbaB/EbfC DNA-binding family VC395_1070 PF02132 RecR protein VC395_1070 PF13662 Toprim domain VC395_1071 PF03692 Putative zinc- or iron-chelating domain VC395_1072 PF03692 Putative zinc- or iron-chelating domain VC395_1073 PF00106 short chain dehydrogenase VC395_1074 PF01343 Peptidase family S49 VC395_1074 PF08496 Peptidase family S49 N-terminal VC395_1075 PF00291 Pyridoxal-phosphate dependent enzyme VC395_1076 PF13404 AsnC-type helix-turn-helix domain VC395_1076 PF01037 Lrp/AsnC ligand binding domain VC395_1079 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VC395_1081 PF00990 Diguanylate cyclase, GGDEF domain VC395_1081 PF08448 PAS fold VC395_1083 PF01022 Bacterial regulatory protein, arsR family VC395_1084 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC395_1084 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VC395_1090 PF01161 Phosphatidylethanolamine-binding protein VC395_1094 PF01300 Telomere recombination VC395_1094 PF03481 Putative GTP-binding controlling metal-binding VC395_1097 PF00072 Response regulator receiver domain VC395_1099 PF13426 PAS domain VC395_1099 PF13188 PAS domain VC395_1099 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1099 PF00989 PAS fold VC395_1099 PF00512 His Kinase A (phospho-acceptor) domain VC395_1100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1100 PF00512 His Kinase A (phospho-acceptor) domain VC395_1101 PF13188 PAS domain VC395_1101 PF03707 Bacterial signalling protein N terminal repeat VC395_1101 PF00990 Diguanylate cyclase, GGDEF domain VC395_1101 PF00563 EAL domain VC395_1102 PF00072 Response regulator receiver domain VC395_1102 PF02954 Bacterial regulatory protein, Fis family VC395_1102 PF00158 Sigma-54 interaction domain VC395_1103 PF08448 PAS fold VC395_1103 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1103 PF13188 PAS domain VC395_1103 PF00072 Response regulator receiver domain VC395_1103 PF00512 His Kinase A (phospho-acceptor) domain VC395_1106 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VC395_1107 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1108 PF12911 N-terminal TM domain of oligopeptide transport permease C VC395_1108 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1109 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC395_1109 PF00005 ABC transporter VC395_1110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC395_1110 PF00005 ABC transporter VC395_1111 PF13409 Glutathione S-transferase, N-terminal domain VC395_1112 PF01515 Phosphate acetyl/butaryl transferase VC395_1112 PF07085 DRTGG domain VC395_1113 PF00871 Acetokinase family VC395_1114 PF04217 Protein of unknown function, DUF412 VC395_1115 PF09905 DNA-binding protein VF530 VC395_1117 PF02653 Branched-chain amino acid transport system / permease component VC395_1118 PF00005 ABC transporter VC395_1119 PF00990 Diguanylate cyclase, GGDEF domain VC395_1121 PF07517 SecA DEAD-like domain VC395_1121 PF01043 SecA preprotein cross-linking domain VC395_1121 PF07516 SecA Wing and Scaffold domain VC395_1121 PF02810 SEC-C motif VC395_1122 PF03548 Outer membrane lipoprotein carrier protein LolA VC395_1123 PF00004 ATPase family associated with various cellular activities (AAA) VC395_1123 PF16193 AAA C-terminal domain VC395_1123 PF12002 MgsA AAA+ ATPase C terminal VC395_1125 PF02403 Seryl-tRNA synthetase N-terminal domain VC395_1125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VC395_1126 PF00202 Aminotransferase class-III VC395_1127 PF06968 Biotin and Thiamin Synthesis associated domain VC395_1127 PF04055 Radical SAM superfamily VC395_1128 PF00155 Aminotransferase class I and II VC395_1129 PF08241 Methyltransferase domain VC395_1132 PF01435 Peptidase family M48 VC395_1134 PF00106 short chain dehydrogenase VC395_1139 PF16036 Chalcone isomerase-like VC395_1141 PF00206 Lyase VC395_1141 PF08328 Adenylosuccinate lyase C-terminal VC395_1142 PF04356 Protein of unknown function (DUF489) VC395_1144 PF00294 pfkB family carbohydrate kinase VC395_1146 PF13693 Winged helix-turn-helix DNA-binding VC395_1147 PF09039 Mu DNA binding, I gamma subdomain VC395_1147 PF09299 Mu transposase, C-terminal VC395_1147 PF02914 Bacteriophage Mu transposase VC395_1147 PF02316 Mu DNA-binding domain VC395_1148 PF13401 AAA domain VC395_1148 PF09077 Mu B transposition protein, C terminal VC395_1168 PF08461 Ribonuclease R winged-helix domain VC395_1169 PF11985 Protein of unknown function (DUF3486) VC395_1170 PF03237 Terminase-like family VC395_1171 PF06074 Protein of unknown function (DUF935) VC395_1179 PF10124 Mu-like prophage major head subunit gpT VC395_1181 PF07030 Protein of unknown function (DUF1320) VC395_1185 PF04984 Phage tail sheath protein subtilisin-like domain VC395_1185 PF17482 Phage tail sheath C-terminal domain VC395_1187 PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 VC395_1191 PF06890 Bacteriophage Mu Gp45 protein VC395_1193 PF04865 Baseplate J-like protein VC395_1194 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) VC395_1197 PF00816 H-NS histone family VC395_1198 PF03553 Na+/H+ antiporter family VC395_1199 PF08029 HisG, C-terminal domain VC395_1199 PF01634 ATP phosphoribosyltransferase VC395_1200 PF00815 Histidinol dehydrogenase VC395_1201 PF00155 Aminotransferase class I and II VC395_1202 PF00475 Imidazoleglycerol-phosphate dehydratase VC395_1202 PF08645 Polynucleotide kinase 3 phosphatase VC395_1203 PF00117 Glutamine amidotransferase class-I VC395_1204 PF00977 Histidine biosynthesis protein VC395_1205 PF00977 Histidine biosynthesis protein VC395_1206 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VC395_1206 PF01502 Phosphoribosyl-AMP cyclohydrolase VC395_1207 PF00849 RNA pseudouridylate synthase VC395_1208 PF03971 Monomeric isocitrate dehydrogenase VC395_1209 PF00313 'Cold-shock' DNA-binding domain VC395_1210 PF02617 ATP-dependent Clp protease adaptor protein ClpS VC395_1211 PF17871 AAA lid domain VC395_1211 PF07724 AAA domain (Cdc48 subfamily) VC395_1211 PF00004 ATPase family associated with various cellular activities (AAA) VC395_1211 PF02861 Clp amino terminal domain, pathogenicity island component VC395_1211 PF10431 C-terminal, D2-small domain, of ClpB protein VC395_1212 PF02080 TrkA-C domain VC395_1212 PF06826 Predicted Permease Membrane Region VC395_1213 PF00462 Glutaredoxin VC395_1214 PF00465 Iron-containing alcohol dehydrogenase VC395_1214 PF00171 Aldehyde dehydrogenase family VC395_1215 PF01380 SIS domain VC395_1215 PF01418 Helix-turn-helix domain, rpiR family VC395_1216 PF00282 Pyridoxal-dependent decarboxylase conserved domain VC395_1218 PF03956 Lysine exporter LysO VC395_1220 PF04993 TfoX N-terminal domain VC395_1220 PF04994 TfoX C-terminal domain VC395_1223 PF00512 His Kinase A (phospho-acceptor) domain VC395_1223 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1223 PF00989 PAS fold VC395_1225 PF00266 Aminotransferase class-V VC395_1228 PF18030 RimK PreATP-grasp domain VC395_1228 PF08443 RimK-like ATP-grasp domain VC395_1229 PF08003 Protein of unknown function (DUF1698) VC395_1230 PF13649 Methyltransferase domain VC395_1231 PF01904 Protein of unknown function DUF72 VC395_1232 PF02938 GAD domain VC395_1232 PF00152 tRNA synthetases class II (D, K and N) VC395_1232 PF01336 OB-fold nucleic acid binding domain VC395_1233 PF00265 Thymidine kinase VC395_1237 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) VC395_1238 PF04865 Baseplate J-like protein VC395_1240 PF06890 Bacteriophage Mu Gp45 protein VC395_1244 PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 VC395_1246 PF17482 Phage tail sheath C-terminal domain VC395_1246 PF04984 Phage tail sheath protein subtilisin-like domain VC395_1250 PF07030 Protein of unknown function (DUF1320) VC395_1252 PF10124 Mu-like prophage major head subunit gpT VC395_1260 PF06074 Protein of unknown function (DUF935) VC395_1261 PF03237 Terminase-like family VC395_1262 PF11985 Protein of unknown function (DUF3486) VC395_1263 PF08461 Ribonuclease R winged-helix domain VC395_1283 PF09077 Mu B transposition protein, C terminal VC395_1283 PF13401 AAA domain VC395_1284 PF02914 Bacteriophage Mu transposase VC395_1284 PF09039 Mu DNA binding, I gamma subdomain VC395_1284 PF09299 Mu transposase, C-terminal VC395_1284 PF02316 Mu DNA-binding domain VC395_1285 PF13693 Winged helix-turn-helix DNA-binding VC395_1288 PF00290 Tryptophan synthase alpha chain VC395_1289 PF00291 Pyridoxal-phosphate dependent enzyme VC395_1290 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VC395_1290 PF00218 Indole-3-glycerol phosphate synthase VC395_1291 PF00591 Glycosyl transferase family, a/b domain VC395_1291 PF02885 Glycosyl transferase family, helical bundle domain VC395_1292 PF00117 Glutamine amidotransferase class-I VC395_1293 PF04715 Anthranilate synthase component I, N terminal region VC395_1293 PF00425 chorismate binding enzyme VC395_1295 PF08056 Tryptophan operon leader peptide VC395_1296 PF02811 PHP domain VC395_1297 PF01300 Telomere recombination VC395_1298 PF00849 RNA pseudouridylate synthase VC395_1298 PF01479 S4 domain VC395_1299 PF00664 ABC transporter transmembrane region VC395_1299 PF00005 ABC transporter VC395_1300 PF00664 ABC transporter transmembrane region VC395_1300 PF00005 ABC transporter VC395_1301 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC395_1303 PF00266 Aminotransferase class-V VC395_1304 PF08448 PAS fold VC395_1304 PF00990 Diguanylate cyclase, GGDEF domain VC395_1305 PF02698 DUF218 domain VC395_1307 PF03949 Malic enzyme, NAD binding domain VC395_1307 PF00390 Malic enzyme, N-terminal domain VC395_1309 PF01259 SAICAR synthetase VC395_1314 PF13488 Glycine zipper VC395_1314 PF00691 OmpA family VC395_1317 PF13183 4Fe-4S dicluster domain VC395_1317 PF01565 FAD binding domain VC395_1317 PF02913 FAD linked oxidases, C-terminal domain VC395_1318 PF04191 Phospholipid methyltransferase VC395_1319 PF00089 Trypsin VC395_1321 PF00221 Aromatic amino acid lyase VC395_1322 PF17391 Urocanase N-terminal domain VC395_1322 PF17392 Urocanase C-terminal domain VC395_1322 PF01175 Urocanase Rossmann-like domain VC395_1323 PF00491 Arginase family VC395_1324 PF01979 Amidohydrolase family VC395_1325 PF00392 Bacterial regulatory proteins, gntR family VC395_1325 PF07702 UTRA domain VC395_1327 PF04269 Protein of unknown function, DUF440 VC395_1328 PF08207 Elongation factor P (EF-P) KOW-like domain VC395_1328 PF01132 Elongation factor P (EF-P) OB domain VC395_1328 PF09285 Elongation factor P, C-terminal VC395_1330 PF13426 PAS domain VC395_1330 PF00563 EAL domain VC395_1330 PF00990 Diguanylate cyclase, GGDEF domain VC395_1331 PF00136 DNA polymerase family B VC395_1331 PF03104 DNA polymerase family B, exonuclease domain VC395_1332 PF00072 Response regulator receiver domain VC395_1332 PF00196 Bacterial regulatory proteins, luxR family VC395_1333 PF02151 UvrB/uvrC motif VC395_1333 PF08459 UvrC Helix-hairpin-helix N-terminal VC395_1333 PF01541 GIY-YIG catalytic domain VC395_1334 PF01066 CDP-alcohol phosphatidyltransferase VC395_1335 PF00072 Response regulator receiver domain VC395_1335 PF00990 Diguanylate cyclase, GGDEF domain VC395_1338 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VC395_1338 PF01409 tRNA synthetases class II core domain (F) VC395_1339 PF03147 Ferredoxin-fold anticodon binding domain VC395_1339 PF01588 Putative tRNA binding domain VC395_1339 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VC395_1339 PF03484 tRNA synthetase B5 domain VC395_1339 PF03483 B3/4 domain VC395_1341 PF00216 Bacterial DNA-binding protein VC395_1345 PF05724 Thiopurine S-methyltransferase (TPMT) VC395_1347 PF02222 ATP-grasp domain VC395_1350 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VC395_1350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VC395_1351 PF04172 LrgB-like family VC395_1352 PF03788 LrgA family VC395_1353 PF00929 Exonuclease VC395_1353 PF08411 Exonuclease C-terminal VC395_1355 PF01641 SelR domain VC395_1356 PF02277 Phosphoribosyltransferase VC395_1357 PF02654 Cobalamin-5-phosphate synthase VC395_1358 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VC395_1361 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VC395_1363 PF01032 FecCD transport family VC395_1364 PF00005 ABC transporter VC395_1367 PF17200 Single Cache domain 2 VC395_1367 PF00672 HAMP domain VC395_1367 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_1371 PF00994 Probable molybdopterin binding domain VC395_1373 PF00111 2Fe-2S iron-sulfur cluster binding domain VC395_1373 PF00175 Oxidoreductase NAD-binding domain VC395_1373 PF00970 Oxidoreductase FAD-binding domain VC395_1374 PF00268 Ribonucleotide reductase, small chain VC395_1375 PF03477 ATP cone domain VC395_1375 PF02867 Ribonucleotide reductase, barrel domain VC395_1375 PF00317 Ribonucleotide reductase, all-alpha domain VC395_1377 PF03989 DNA gyrase C-terminal domain, beta-propeller VC395_1377 PF00521 DNA gyrase/topoisomerase IV, subunit A VC395_1380 PF07690 Major Facilitator Superfamily VC395_1382 PF00925 GTP cyclohydrolase II VC395_1388 PF05951 Bacterial protein of unknown function (DUF882) VC395_1389 PF00753 Metallo-beta-lactamase superfamily VC395_1392 PF03480 Bacterial extracellular solute-binding protein, family 7 VC395_1394 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VC395_1395 PF17200 Single Cache domain 2 VC395_1395 PF07730 Histidine kinase VC395_1396 PF00072 Response regulator receiver domain VC395_1396 PF00196 Bacterial regulatory proteins, luxR family VC395_1397 PF01047 MarR family VC395_1398 PF02028 BCCT, betaine/carnitine/choline family transporter VC395_1399 PF01522 Polysaccharide deacetylase VC395_1400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VC395_1401 PF02378 Phosphotransferase system, EIIC VC395_1402 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VC395_1403 PF11975 Family 4 glycosyl hydrolase C-terminal domain VC395_1403 PF02056 Family 4 glycosyl hydrolase VC395_1404 PF04794 YdjC-like protein VC395_1405 PF00356 Bacterial regulatory proteins, lacI family VC395_1406 PF13506 Glycosyl transferase family 21 VC395_1407 PF04349 Periplasmic glucan biosynthesis protein, MdoG VC395_1408 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_1408 PF17200 Single Cache domain 2 VC395_1408 PF00672 HAMP domain VC395_1412 PF00155 Aminotransferase class I and II VC395_1414 PF00672 HAMP domain VC395_1414 PF01966 HD domain VC395_1415 PF02581 Thiamine monophosphate synthase VC395_1415 PF08543 Phosphomethylpyrimidine kinase VC395_1416 PF00152 tRNA synthetases class II (D, K and N) VC395_1416 PF01336 OB-fold nucleic acid binding domain VC395_1417 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_1417 PF00672 HAMP domain VC395_1418 PF01242 6-pyruvoyl tetrahydropterin synthase VC395_1419 PF03313 Serine dehydratase alpha chain VC395_1419 PF03315 Serine dehydratase beta chain VC395_1420 PF03222 Tryptophan/tyrosine permease family VC395_1421 PF00293 NUDIX domain VC395_1422 PF00425 chorismate binding enzyme VC395_1422 PF04715 Anthranilate synthase component I, N terminal region VC395_1425 PF04317 YcjX-like family, DUF463 VC395_1426 PF05128 Domain of unknown function (DUF697) VC395_1427 PF00158 Sigma-54 interaction domain VC395_1427 PF18024 Helix-turn-helix domain VC395_1428 PF13302 Acetyltransferase (GNAT) domain VC395_1430 PF00892 EamA-like transporter family VC395_1431 PF00842 Alanine racemase, C-terminal domain VC395_1431 PF01168 Alanine racemase, N-terminal domain VC395_1432 PF00672 HAMP domain VC395_1432 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_1433 PF00939 Sodium:sulfate symporter transmembrane region VC395_1434 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC395_1434 PF00512 His Kinase A (phospho-acceptor) domain VC395_1434 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1435 PF00158 Sigma-54 interaction domain VC395_1435 PF00072 Response regulator receiver domain VC395_1435 PF02954 Bacterial regulatory protein, Fis family VC395_1436 PF04393 Protein of unknown function (DUF535) VC395_1437 PF06629 MltA-interacting protein MipA VC395_1438 PF00672 HAMP domain VC395_1438 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1438 PF00512 His Kinase A (phospho-acceptor) domain VC395_1439 PF00072 Response regulator receiver domain VC395_1439 PF00486 Transcriptional regulatory protein, C terminal VC395_1444 PF13407 Periplasmic binding protein domain VC395_1446 PF00005 ABC transporter VC395_1447 PF02653 Branched-chain amino acid transport system / permease component VC395_1451 PF01970 Tripartite tricarboxylate transporter TctA family VC395_1454 PF07729 FCD domain VC395_1454 PF00392 Bacterial regulatory proteins, gntR family VC395_1456 PF00285 Citrate synthase, C-terminal domain VC395_1457 PF00330 Aconitase family (aconitate hydratase) VC395_1457 PF00694 Aconitase C-terminal domain VC395_1458 PF04303 PrpF protein VC395_1459 PF16177 Acetyl-coenzyme A synthetase N-terminus VC395_1459 PF00501 AMP-binding enzyme VC395_1459 PF13193 AMP-binding enzyme C-terminal domain VC395_1462 PF07687 Peptidase dimerisation domain VC395_1462 PF01546 Peptidase family M20/M25/M40 VC395_1463 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VC395_1464 PF04209 homogentisate 1,2-dioxygenase VC395_1466 PF14497 Glutathione S-transferase, C-terminal domain VC395_1466 PF02798 Glutathione S-transferase, N-terminal domain VC395_1467 PF00072 Response regulator receiver domain VC395_1468 PF00512 His Kinase A (phospho-acceptor) domain VC395_1468 PF01627 Hpt domain VC395_1468 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1468 PF00072 Response regulator receiver domain VC395_1468 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VC395_1468 PF00672 HAMP domain VC395_1469 PF00462 Glutaredoxin VC395_1469 PF08534 Redoxin VC395_1472 PF00990 Diguanylate cyclase, GGDEF domain VC395_1473 PF10672 S-adenosylmethionine-dependent methyltransferase VC395_1473 PF17785 PUA-like domain VC395_1474 PF00708 Acylphosphatase VC395_1475 PF04358 DsrC like protein VC395_1477 PF01027 Inhibitor of apoptosis-promoting Bax1 VC395_1478 PF00005 ABC transporter VC395_1479 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1480 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1481 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC395_1482 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VC395_1482 PF10414 Sirohaem synthase dimerisation region VC395_1482 PF14824 Sirohaem biosynthesis protein central VC395_1484 PF04055 Radical SAM superfamily VC395_1485 PF06508 Queuosine biosynthesis protein QueC VC395_1489 PF03707 Bacterial signalling protein N terminal repeat VC395_1489 PF00990 Diguanylate cyclase, GGDEF domain VC395_1489 PF00563 EAL domain VC395_1491 PF00990 Diguanylate cyclase, GGDEF domain VC395_1491 PF17158 Membrane-associated sensor, integral membrane domain VC395_1492 PF00012 Hsp70 protein VC395_1495 PF00990 Diguanylate cyclase, GGDEF domain VC395_1495 PF00563 EAL domain VC395_1495 PF03707 Bacterial signalling protein N terminal repeat VC395_1501 PF00270 DEAD/DEAH box helicase VC395_1501 PF04408 Helicase associated domain (HA2) VC395_1501 PF00271 Helicase conserved C-terminal domain VC395_1501 PF11898 Domain of unknown function (DUF3418) VC395_1501 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VC395_1505 PF00012 Hsp70 protein VC395_1507 PF10437 Bacterial lipoate protein ligase C-terminus VC395_1507 PF03099 Biotin/lipoate A/B protein ligase family VC395_1509 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_1509 PF03466 LysR substrate binding domain VC395_1510 PF07690 Major Facilitator Superfamily VC395_1511 PF03441 FAD binding domain of DNA photolyase VC395_1511 PF00875 DNA photolyase VC395_1512 PF00893 Small Multidrug Resistance protein VC395_1513 PF00672 HAMP domain VC395_1513 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_1516 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1516 PF01584 CheW-like domain VC395_1516 PF01627 Hpt domain VC395_1516 PF07194 P2 response regulator binding domain VC395_1516 PF02895 Signal transducing histidine kinase, homodimeric domain VC395_1517 PF00072 Response regulator receiver domain VC395_1517 PF01584 CheW-like domain VC395_1517 PF01627 Hpt domain VC395_1517 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1518 PF03705 CheR methyltransferase, all-alpha domain VC395_1518 PF01739 CheR methyltransferase, SAM binding domain VC395_1520 PF01339 CheB methylesterase VC395_1520 PF00072 Response regulator receiver domain VC395_1521 PF01584 CheW-like domain VC395_1522 PF17202 Single cache domain 3 VC395_1522 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_1522 PF00672 HAMP domain VC395_1524 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_1524 PF00672 HAMP domain VC395_1524 PF12729 Four helix bundle sensory module for signal transduction VC395_1525 PF13426 PAS domain VC395_1525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_1525 PF08447 PAS fold VC395_1526 PF00271 Helicase conserved C-terminal domain VC395_1526 PF00270 DEAD/DEAH box helicase VC395_1528 PF02321 Outer membrane efflux protein VC395_1529 PF00529 HlyD membrane-fusion protein of T1SS VC395_1529 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VC395_1530 PF07690 Major Facilitator Superfamily VC395_1532 PF00672 HAMP domain VC395_1532 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_1532 PF02743 Cache domain VC395_1533 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VC395_1534 PF05638 Type VI secretion system effector, Hcp VC395_1535 PF04717 Type VI secretion system, phage-baseplate injector VC395_1535 PF16671 Actin cross-linking domain VC395_1540 PF01810 LysE type translocator VC395_1541 PF01235 Sodium:alanine symporter family VC395_1544 PF13416 Bacterial extracellular solute-binding protein VC395_1545 PF13416 Bacterial extracellular solute-binding protein VC395_1546 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1547 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1548 PF08402 TOBE domain VC395_1548 PF00005 ABC transporter VC395_1552 PF01171 PP-loop family VC395_1553 PF00582 Universal stress protein family VC395_1554 PF13545 Crp-like helix-turn-helix domain VC395_1554 PF00027 Cyclic nucleotide-binding domain VC395_1557 PF00403 Heavy-metal-associated domain VC395_1559 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VC395_1559 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VC395_1562 PF00115 Cytochrome C and Quinol oxidase polypeptide I VC395_1565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1565 PF00512 His Kinase A (phospho-acceptor) domain VC395_1565 PF09308 LuxQ, periplasmic VC395_1565 PF00072 Response regulator receiver domain VC395_1566 PF00664 ABC transporter transmembrane region VC395_1566 PF00005 ABC transporter VC395_1566 PF03412 Peptidase C39 family VC395_1570 PF01376 Heat-labile enterotoxin beta chain VC395_1571 PF01375 Heat-labile enterotoxin alpha chain VC395_1572 PF05707 Zonular occludens toxin (Zot) VC395_1573 PF10734 Protein of unknown function (DUF2523) VC395_1574 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII VC395_1578 PF01381 Helix-turn-helix VC395_1581 PF01381 Helix-turn-helix VC395_1601 PF17414 MatP C-terminal ribbon-helix-helix domain VC395_1601 PF06303 MatP N-terminal domain VC395_1602 PF13654 AAA domain VC395_1602 PF05362 Lon protease (S16) C-terminal proteolytic domain VC395_1603 PF07977 FabA-like domain VC395_1604 PF04957 Ribosome modulation factor VC395_1608 PF02926 THUMP domain VC395_1608 PF10672 S-adenosylmethionine-dependent methyltransferase VC395_1608 PF01170 Putative RNA methylase family UPF0020 VC395_1610 PF07126 Cell-division protein ZapC VC395_1611 PF01180 Dihydroorotate dehydrogenase VC395_1614 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VC395_1614 PF11940 Domain of unknown function (DUF3458) Ig-like fold VC395_1614 PF01433 Peptidase family M1 domain VC395_1616 PF17804 Tail specific protease N-terminal domain VC395_1616 PF00595 PDZ domain VC395_1616 PF11818 C-terminal domain of tail specific protease (DUF3340) VC395_1616 PF03572 Peptidase family S41 VC395_1617 PF17516 ProQ C-terminal domain VC395_1617 PF04352 ProQ/FINO family VC395_1618 PF13185 GAF domain VC395_1619 PF00664 ABC transporter transmembrane region VC395_1619 PF00005 ABC transporter VC395_1620 PF04403 Paraquat-inducible protein A VC395_1621 PF02470 MlaD protein VC395_1622 PF01189 16S rRNA methyltransferase RsmB/F VC395_1622 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VC395_1622 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VC395_1623 PF13509 S1 domain VC395_1623 PF17783 CvfB-like winged helix domain VC395_1626 PF00793 DAHP synthetase I family VC395_1627 PF04461 Protein of unknown function (DUF520) VC395_1628 PF02146 Sir2 family VC395_1631 PF13247 4Fe-4S dicluster domain VC395_1632 PF00384 Molybdopterin oxidoreductase VC395_1632 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VC395_1632 PF01568 Molydopterin dinucleotide binding domain VC395_1634 PF02613 Nitrate reductase delta subunit VC395_1638 PF02634 FdhD/NarQ family VC395_1639 PF12848 ABC transporter VC395_1639 PF00005 ABC transporter VC395_1640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1640 PF00989 PAS fold VC395_1640 PF00512 His Kinase A (phospho-acceptor) domain VC395_1641 PF02954 Bacterial regulatory protein, Fis family VC395_1641 PF00072 Response regulator receiver domain VC395_1641 PF00158 Sigma-54 interaction domain VC395_1642 PF12849 PBP superfamily domain VC395_1643 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1644 PF00005 ABC transporter VC395_1644 PF08402 TOBE domain VC395_1645 PF12804 MobA-like NTP transferase domain VC395_1646 PF03453 MoeA N-terminal region (domain I and II) VC395_1646 PF03454 MoeA C-terminal region (domain IV) VC395_1646 PF00994 Probable molybdopterin binding domain VC395_1650 PF00480 ROK family VC395_1653 PF02743 Cache domain VC395_1653 PF00672 HAMP domain VC395_1653 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_1654 PF00877 NlpC/P60 family VC395_1657 PF01554 MatE VC395_1659 PF01068 ATP dependent DNA ligase domain VC395_1659 PF14743 DNA ligase OB-like domain VC395_1661 PF03544 Gram-negative bacterial TonB protein C-terminal VC395_1662 PF02472 Biopolymer transport protein ExbD/TolR VC395_1663 PF01618 MotA/TolQ/ExbB proton channel family VC395_1664 PF01618 MotA/TolQ/ExbB proton channel family VC395_1666 PF13416 Bacterial extracellular solute-binding protein VC395_1667 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1668 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1669 PF00005 ABC transporter VC395_1669 PF17912 MalK OB fold domain VC395_1670 PF00455 DeoR C terminal sensor domain VC395_1670 PF08220 DeoR-like helix-turn-helix domain VC395_1671 PF03009 Glycerophosphoryl diester phosphodiesterase family VC395_1672 PF04074 YhcH/YjgK/YiaL VC395_1673 PF01042 Endoribonuclease L-PSP VC395_1674 PF00356 Bacterial regulatory proteins, lacI family VC395_1675 PF00232 Glycosyl hydrolase family 1 VC395_1677 PF00141 Peroxidase VC395_1678 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_1678 PF03466 LysR substrate binding domain VC395_1680 PF00529 HlyD membrane-fusion protein of T1SS VC395_1682 PF12704 MacB-like periplasmic core domain VC395_1682 PF02687 FtsX-like permease family VC395_1682 PF00005 ABC transporter VC395_1683 PF00005 ABC transporter VC395_1683 PF12704 MacB-like periplasmic core domain VC395_1683 PF02687 FtsX-like permease family VC395_1684 PF12704 MacB-like periplasmic core domain VC395_1684 PF02687 FtsX-like permease family VC395_1684 PF00005 ABC transporter VC395_1686 PF02322 Cytochrome bd terminal oxidase subunit II VC395_1687 PF01654 Cytochrome bd terminal oxidase subunit I VC395_1689 PF00206 Lyase VC395_1689 PF10415 Fumarase C C-terminus VC395_1695 PF13193 AMP-binding enzyme C-terminal domain VC395_1695 PF00501 AMP-binding enzyme VC395_1696 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_1696 PF03466 LysR substrate binding domain VC395_1697 PF00361 Proton-conducting membrane transporter VC395_1697 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VC395_1698 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) VC395_1699 PF00080 Copper/zinc superoxide dismutase (SODC) VC395_1701 PF06628 Catalase-related immune-responsive VC395_1701 PF00199 Catalase VC395_1704 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_1704 PF03466 LysR substrate binding domain VC395_1705 PF03306 Alpha-acetolactate decarboxylase VC395_1706 PF00205 Thiamine pyrophosphate enzyme, central domain VC395_1706 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VC395_1706 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VC395_1708 PF00672 HAMP domain VC395_1708 PF00990 Diguanylate cyclase, GGDEF domain VC395_1708 PF17154 Gammaproteobacterial periplasmic sensor domain VC395_1708 PF00563 EAL domain VC395_1709 PF00990 Diguanylate cyclase, GGDEF domain VC395_1710 PF01263 Aldose 1-epimerase VC395_1711 PF10509 Galactokinase galactose-binding signature VC395_1711 PF08544 GHMP kinases C terminal VC395_1711 PF00288 GHMP kinases N terminal domain VC395_1712 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VC395_1712 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VC395_1713 PF07690 Major Facilitator Superfamily VC395_1718 PF01584 CheW-like domain VC395_1718 PF00072 Response regulator receiver domain VC395_1720 PF12431 Transcriptional regulator VC395_1720 PF00072 Response regulator receiver domain VC395_1721 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1721 PF00989 PAS fold VC395_1721 PF17203 Single cache domain 3 VC395_1721 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VC395_1723 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VC395_1727 PF04204 Homoserine O-succinyltransferase VC395_1731 PF01797 Transposase IS200 like VC395_1733 PF01863 Protein of unknown function DUF45 VC395_1735 PF03466 LysR substrate binding domain VC395_1735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_1739 PF02321 Outer membrane efflux protein VC395_1740 PF05736 OprF membrane domain VC395_1740 PF00691 OmpA family VC395_1742 PF16653 Saccharopine dehydrogenase C-terminal domain VC395_1742 PF03435 Saccharopine dehydrogenase NADP binding domain VC395_1743 PF00202 Aminotransferase class-III VC395_1744 PF06965 Na+/H+ antiporter 1 VC395_1747 PF00005 ABC transporter VC395_1748 PF01554 MatE VC395_1749 PF11066 Protein of unknown function (DUF2867) VC395_1749 PF13460 NAD(P)H-binding VC395_1751 PF07690 Major Facilitator Superfamily VC395_1752 PF00849 RNA pseudouridylate synthase VC395_1752 PF01479 S4 domain VC395_1753 PF00271 Helicase conserved C-terminal domain VC395_1753 PF04851 Type III restriction enzyme, res subunit VC395_1755 PF00072 Response regulator receiver domain VC395_1755 PF00486 Transcriptional regulatory protein, C terminal VC395_1757 PF01386 Ribosomal L25p family VC395_1758 PF00563 EAL domain VC395_1758 PF01590 GAF domain VC395_1758 PF00990 Diguanylate cyclase, GGDEF domain VC395_1758 PF00360 Phytochrome region VC395_1760 PF12729 Four helix bundle sensory module for signal transduction VC395_1760 PF00672 HAMP domain VC395_1760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_1764 PF12793 Sugar transport-related sRNA regulator N-term VC395_1764 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VC395_1769 PF00990 Diguanylate cyclase, GGDEF domain VC395_1769 PF00563 EAL domain VC395_1769 PF03707 Bacterial signalling protein N terminal repeat VC395_1770 PF00072 Response regulator receiver domain VC395_1770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1770 PF09308 LuxQ, periplasmic VC395_1770 PF00512 His Kinase A (phospho-acceptor) domain VC395_1772 PF00571 CBS domain VC395_1772 PF03448 MgtE intracellular N domain VC395_1772 PF01769 Divalent cation transporter VC395_1775 PF03222 Tryptophan/tyrosine permease family VC395_1776 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VC395_1777 PF00005 ABC transporter VC395_1780 PF06945 Protein of unknown function (DUF1289) VC395_1782 PF13416 Bacterial extracellular solute-binding protein VC395_1783 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1784 PF00005 ABC transporter VC395_1785 PF01066 CDP-alcohol phosphatidyltransferase VC395_1786 PF00849 RNA pseudouridylate synthase VC395_1787 PF00209 Sodium:neurotransmitter symporter family VC395_1788 PF13396 Phospholipase_D-nuclease N-terminal VC395_1788 PF13091 PLD-like domain VC395_1789 PF01053 Cys/Met metabolism PLP-dependent enzyme VC395_1790 PF03352 Methyladenine glycosylase VC395_1791 PF00873 AcrB/AcrD/AcrF family VC395_1792 PF13533 Biotin-lipoyl like VC395_1793 PF00529 HlyD membrane-fusion protein of T1SS VC395_1793 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VC395_1796 PF04012 PspA/IM30 family VC395_1797 PF02954 Bacterial regulatory protein, Fis family VC395_1797 PF00158 Sigma-54 interaction domain VC395_1798 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VC395_1799 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1800 PF12911 N-terminal TM domain of oligopeptide transport permease C VC395_1800 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1801 PF00005 ABC transporter VC395_1801 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC395_1802 PF00005 ABC transporter VC395_1805 PF01368 DHH family VC395_1805 PF02833 DHHA2 domain VC395_1810 PF00384 Molybdopterin oxidoreductase VC395_1810 PF01568 Molydopterin dinucleotide binding domain VC395_1810 PF18364 Molybdopterin oxidoreductase N-terminal domain VC395_1811 PF03264 NapC/NirT cytochrome c family, N-terminal region VC395_1812 PF06796 Periplasmic nitrate reductase protein NapE VC395_1813 PF01226 Formate/nitrite transporter VC395_1815 PF01370 NAD dependent epimerase/dehydratase family VC395_1816 PF02698 DUF218 domain VC395_1818 PF04279 Intracellular septation protein A VC395_1819 PF03061 Thioesterase superfamily VC395_1820 PF03795 YCII-related domain VC395_1822 PF08267 Cobalamin-independent synthase, N-terminal domain VC395_1822 PF01717 Cobalamin-independent synthase, Catalytic domain VC395_1823 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_1823 PF03466 LysR substrate binding domain VC395_1826 PF05193 Peptidase M16 inactive domain VC395_1826 PF00675 Insulinase (Peptidase family M16) VC395_1827 PF00990 Diguanylate cyclase, GGDEF domain VC395_1827 PF08447 PAS fold VC395_1827 PF08448 PAS fold VC395_1827 PF00563 EAL domain VC395_1828 PF08497 Radical SAM N-terminal VC395_1828 PF11842 Domain of unknown function (DUF3362) VC395_1828 PF04055 Radical SAM superfamily VC395_1829 PF01810 LysE type translocator VC395_1831 PF16330 MukB hinge domain VC395_1831 PF04310 MukB N-terminal VC395_1832 PF04288 MukE-like family VC395_1833 PF17192 MukF middle domain VC395_1833 PF03882 MukF winged-helix domain VC395_1833 PF17193 MukF C-terminal domain VC395_1835 PF02698 DUF218 domain VC395_1836 PF00486 Transcriptional regulatory protein, C terminal VC395_1836 PF00072 Response regulator receiver domain VC395_1837 PF02613 Nitrate reductase delta subunit VC395_1838 PF00356 Bacterial regulatory proteins, lacI family VC395_1839 PF04994 TfoX C-terminal domain VC395_1839 PF04993 TfoX N-terminal domain VC395_1843 PF08323 Starch synthase catalytic domain VC395_1843 PF00534 Glycosyl transferases group 1 VC395_1844 PF00483 Nucleotidyl transferase VC395_1846 PF08272 Topoisomerase I zinc-ribbon-like VC395_1846 PF01751 Toprim domain VC395_1846 PF01131 DNA topoisomerase VC395_1846 PF01396 Topoisomerase DNA binding C4 zinc finger VC395_1847 PF10692 Protein of unknown function (DUF2498) VC395_1848 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VC395_1851 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VC395_1852 PF04376 Arginine-tRNA-protein transferase, N terminus VC395_1852 PF04377 Arginine-tRNA-protein transferase, C terminus VC395_1853 PF01176 Translation initiation factor 1A / IF-1 VC395_1854 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VC395_1854 PF07055 Enoyl reductase FAD binding domain VC395_1854 PF12241 Trans-2-enoyl-CoA reductase catalytic region VC395_1855 PF02770 Acyl-CoA dehydrogenase, middle domain VC395_1855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VC395_1855 PF09317 Domain of unknown function (DUF1974) VC395_1855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VC395_1856 PF16295 Tetracyclin repressor-like, C-terminal domain VC395_1856 PF00440 Bacterial regulatory proteins, tetR family VC395_1859 PF07383 Protein of unknown function (DUF1496) VC395_1860 PF00171 Aldehyde dehydrogenase family VC395_1861 PF08362 YcdC-like protein, C-terminal region VC395_1861 PF00440 Bacterial regulatory proteins, tetR family VC395_1866 PF00924 Mechanosensitive ion channel VC395_1866 PF05552 Conserved TM helix VC395_1868 PF04403 Paraquat-inducible protein A VC395_1869 PF02470 MlaD protein VC395_1871 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VC395_1872 PF00873 AcrB/AcrD/AcrF family VC395_1873 PF13356 Arm DNA-binding domain VC395_1873 PF00589 Phage integrase family VC395_1875 PF00271 Helicase conserved C-terminal domain VC395_1875 PF00176 SNF2 family N-terminal domain VC395_1875 PF12419 SNF2 Helicase protein VC395_1879 PF11867 Domain of unknown function (DUF3387) VC395_1879 PF18766 SWI2/SNF2 ATPase VC395_1879 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VC395_1883 PF02384 N-6 DNA Methylase VC395_1887 PF07646 Kelch motif VC395_1888 PF01344 Kelch motif VC395_1889 PF01380 SIS domain VC395_1889 PF01418 Helix-turn-helix domain, rpiR family VC395_1890 PF00701 Dihydrodipicolinate synthetase family VC395_1891 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VC395_1892 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VC395_1893 PF03480 Bacterial extracellular solute-binding protein, family 7 VC395_1895 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VC395_1896 PF00480 ROK family VC395_1897 PF01979 Amidohydrolase family VC395_1898 PF09264 Vibrio cholerae sialidase, lectin insertion VC395_1898 PF13088 BNR repeat-like domain VC395_1900 PF04002 RadC-like JAB domain VC395_1903 PF00665 Integrase core domain VC395_1904 PF01527 Transposase VC395_1913 PF00005 ABC transporter VC395_1929 PF00875 DNA photolyase VC395_1929 PF03441 FAD binding domain of DNA photolyase VC395_1931 PF09905 DNA-binding protein VF530 VC395_1932 PF01590 GAF domain VC395_1932 PF00158 Sigma-54 interaction domain VC395_1932 PF02954 Bacterial regulatory protein, Fis family VC395_1934 PF00171 Aldehyde dehydrogenase family VC395_1938 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VC395_1940 PF12833 Helix-turn-helix domain VC395_1941 PF02378 Phosphotransferase system, EIIC VC395_1941 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VC395_1941 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VC395_1942 PF01238 Phosphomannose isomerase type I VC395_1943 PF06610 L-alanine exporter VC395_1946 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_1946 PF00072 Response regulator receiver domain VC395_1946 PF00512 His Kinase A (phospho-acceptor) domain VC395_1946 PF09308 LuxQ, periplasmic VC395_1948 PF02445 Quinolinate synthetase A protein VC395_1950 PF00691 OmpA family VC395_1951 PF04052 TolB amino-terminal domain VC395_1951 PF07676 WD40-like Beta Propeller Repeat VC395_1953 PF02472 Biopolymer transport protein ExbD/TolR VC395_1954 PF01618 MotA/TolQ/ExbB proton channel family VC395_1956 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) VC395_1957 PF08173 Membrane bound YbgT-like protein VC395_1958 PF02322 Cytochrome bd terminal oxidase subunit II VC395_1959 PF01654 Cytochrome bd terminal oxidase subunit I VC395_1960 PF17864 RuvB AAA lid domain VC395_1960 PF05491 RuvB C-terminal winged helix domain VC395_1960 PF05496 Holliday junction DNA helicase RuvB P-loop domain VC395_1961 PF01330 RuvA N terminal domain VC395_1961 PF07499 RuvA, C-terminal domain VC395_1962 PF02075 Crossover junction endodeoxyribonuclease RuvC VC395_1963 PF09190 DALR domain VC395_1963 PF01406 tRNA synthetases class I (C) catalytic domain VC395_1964 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VC395_1965 PF00149 Calcineurin-like phosphoesterase VC395_1966 PF08668 HDOD domain VC395_1966 PF00563 EAL domain VC395_1967 PF02810 SEC-C motif VC395_1968 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VC395_1969 PF13609 Gram-negative porin VC395_1970 PF13307 Helicase C-terminal domain VC395_1970 PF06733 DEAD_2 VC395_1971 PF01925 Sulfite exporter TauE/SafE VC395_1972 PF07445 Primosomal replication protein priC VC395_1973 PF10689 Protein of unknown function (DUF2496) VC395_1974 PF00672 HAMP domain VC395_1974 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_1975 PF03372 Endonuclease/Exonuclease/phosphatase family VC395_1976 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1977 PF00528 Binding-protein-dependent transport system inner membrane component VC395_1978 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC395_1979 PF00005 ABC transporter VC395_1981 PF02901 Pyruvate formate lyase-like VC395_1981 PF01228 Glycine radical VC395_1983 PF00672 HAMP domain VC395_1983 PF12729 Four helix bundle sensory module for signal transduction VC395_1983 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_1984 PF04055 Radical SAM superfamily VC395_1986 PF03887 YfbU domain VC395_1987 PF06798 PrkA serine protein kinase C-terminal domain VC395_1987 PF08298 PrkA AAA domain VC395_1988 PF04285 Protein of unknown function (DUF444) VC395_1989 PF04293 SpoVR like protein VC395_1990 PF02348 Cytidylyltransferase VC395_1991 PF03966 Trm112p-like protein VC395_1992 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VC395_1993 PF00005 ABC transporter VC395_1993 PF00664 ABC transporter transmembrane region VC395_1994 PF00753 Metallo-beta-lactamase superfamily VC395_1994 PF13567 Domain of unknown function (DUF4131) VC395_1994 PF03772 Competence protein VC395_1997 PF12704 MacB-like periplasmic core domain VC395_1997 PF02687 FtsX-like permease family VC395_1998 PF00005 ABC transporter VC395_1999 PF12704 MacB-like periplasmic core domain VC395_1999 PF02687 FtsX-like permease family VC395_2001 PF17757 UvrB interaction domain VC395_2001 PF02559 CarD-like/TRCF domain VC395_2001 PF00271 Helicase conserved C-terminal domain VC395_2001 PF00270 DEAD/DEAH box helicase VC395_2001 PF03461 TRCF domain VC395_2003 PF16458 Beta-prism lectin VC395_2003 PF12563 Hemolytic toxin N terminal VC395_2003 PF07968 Leukocidin/Hemolysin toxin family VC395_2005 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC395_2007 PF05728 Uncharacterised protein family (UPF0227) VC395_2009 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VC395_2009 PF13036 Peptidoglycan-synthase activator LpoB VC395_2012 PF01230 HIT domain VC395_2013 PF00672 HAMP domain VC395_2013 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_2015 PF00392 Bacterial regulatory proteins, gntR family VC395_2015 PF07840 FadR C-terminal domain VC395_2016 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VC395_2017 PF02600 Disulfide bond formation protein DsbB VC395_2018 PF17854 FtsK alpha domain VC395_2018 PF09397 Ftsk gamma domain VC395_2018 PF01580 FtsK/SpoIIIE family VC395_2018 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VC395_2019 PF01037 Lrp/AsnC ligand binding domain VC395_2020 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VC395_2020 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VC395_2022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_2022 PF03466 LysR substrate binding domain VC395_2025 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VC395_2026 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VC395_2027 PF18073 Rubredoxin metal binding domain VC395_2028 PF06305 Lipopolysaccharide assembly protein A domain VC395_2029 PF00216 Bacterial DNA-binding protein VC395_2030 PF00575 S1 RNA binding domain VC395_2031 PF02224 Cytidylate kinase VC395_2033 PF13145 PPIC-type PPIASE domain VC395_2034 PF00216 Bacterial DNA-binding protein VC395_2035 PF00004 ATPase family associated with various cellular activities (AAA) VC395_2035 PF02190 ATP-dependent protease La (LON) substrate-binding domain VC395_2035 PF05362 Lon protease (S16) C-terminal proteolytic domain VC395_2036 PF10431 C-terminal, D2-small domain, of ClpB protein VC395_2036 PF06689 ClpX C4-type zinc finger VC395_2036 PF07724 AAA domain (Cdc48 subfamily) VC395_2037 PF00574 Clp protease VC395_2038 PF05697 Bacterial trigger factor protein (TF) VC395_2038 PF05698 Bacterial trigger factor protein (TF) C-terminus VC395_2038 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VC395_2040 PF02743 Cache domain VC395_2040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_2040 PF00512 His Kinase A (phospho-acceptor) domain VC395_2041 PF00072 Response regulator receiver domain VC395_2041 PF02954 Bacterial regulatory protein, Fis family VC395_2041 PF00158 Sigma-54 interaction domain VC395_2042 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VC395_2043 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VC395_2044 PF03480 Bacterial extracellular solute-binding protein, family 7 VC395_2046 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VC395_2049 PF00990 Diguanylate cyclase, GGDEF domain VC395_2049 PF13188 PAS domain VC395_2049 PF00563 EAL domain VC395_2049 PF03707 Bacterial signalling protein N terminal repeat VC395_2057 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VC395_2057 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VC395_2059 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VC395_2060 PF01494 FAD binding domain VC395_2062 PF03466 LysR substrate binding domain VC395_2062 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_2065 PF00384 Molybdopterin oxidoreductase VC395_2065 PF01568 Molydopterin dinucleotide binding domain VC395_2065 PF18364 Molybdopterin oxidoreductase N-terminal domain VC395_2066 PF03264 NapC/NirT cytochrome c family, N-terminal region VC395_2067 PF00704 Glycosyl hydrolases family 18 VC395_2068 PF01773 Na+ dependent nucleoside transporter N-terminus VC395_2068 PF07670 Nucleoside recognition VC395_2068 PF07662 Na+ dependent nucleoside transporter C-terminus VC395_2070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_2070 PF03466 LysR substrate binding domain VC395_2071 PF13406 Transglycosylase SLT domain VC395_2072 PF05166 YcgL domain VC395_2074 PF05209 Septum formation inhibitor MinC, N-terminal domain VC395_2074 PF03775 Septum formation inhibitor MinC, C-terminal domain VC395_2075 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VC395_2076 PF03776 Septum formation topological specificity factor MinE VC395_2077 PF04170 NlpE N-terminal domain VC395_2081 PF07690 Major Facilitator Superfamily VC395_2082 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_2082 PF12729 Four helix bundle sensory module for signal transduction VC395_2082 PF00672 HAMP domain VC395_2083 PF01381 Helix-turn-helix VC395_2083 PF07883 Cupin domain VC395_2085 PF03594 Benzoate membrane transport protein VC395_2086 PF13193 AMP-binding enzyme C-terminal domain VC395_2086 PF00501 AMP-binding enzyme VC395_2087 PF13378 Enolase C-terminal domain-like VC395_2088 PF00378 Enoyl-CoA hydratase/isomerase VC395_2089 PF12697 Alpha/beta hydrolase family VC395_2090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VC395_2090 PF16582 Middle domain of thiamine pyrophosphate VC395_2090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VC395_2091 PF00425 chorismate binding enzyme VC395_2092 PF00155 Aminotransferase class I and II VC395_2094 PF13286 Phosphohydrolase-associated domain VC395_2094 PF01966 HD domain VC395_2099 PF01612 3'-5' exonuclease VC395_2099 PF00570 HRDC domain VC395_2100 PF00501 AMP-binding enzyme VC395_2100 PF13193 AMP-binding enzyme C-terminal domain VC395_2101 PF00561 alpha/beta hydrolase fold VC395_2104 PF00814 Glycoprotease family VC395_2105 PF04851 Type III restriction enzyme, res subunit VC395_2105 PF13307 Helicase C-terminal domain VC395_2107 PF01842 ACT domain VC395_2107 PF00551 Formyl transferase VC395_2108 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VC395_2108 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC395_2109 PF01343 Peptidase family S49 VC395_2110 PF17763 Glutaminase/Asparaginase C-terminal domain VC395_2110 PF00710 Asparaginase, N-terminal VC395_2111 PF07023 Protein of unknown function (DUF1315) VC395_2113 PF01641 SelR domain VC395_2115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC395_2115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VC395_2116 PF01263 Aldose 1-epimerase VC395_2118 PF13847 Methyltransferase domain VC395_2121 PF00072 Response regulator receiver domain VC395_2121 PF01584 CheW-like domain VC395_2122 PF00480 ROK family VC395_2123 PF02887 Pyruvate kinase, alpha/beta domain VC395_2123 PF00224 Pyruvate kinase, barrel domain VC395_2124 PF01734 Patatin-like phospholipase VC395_2127 PF00209 Sodium:neurotransmitter symporter family VC395_2128 PF00367 phosphotransferase system, EIIB VC395_2128 PF02378 Phosphotransferase system, EIIC VC395_2129 PF01026 TatD related DNase VC395_2130 PF09115 DNA polymerase III, delta subunit, C terminal VC395_2131 PF02223 Thymidylate kinase VC395_2132 PF02618 YceG-like family VC395_2133 PF01063 Amino-transferase class IV VC395_2134 PF00109 Beta-ketoacyl synthase, N-terminal domain VC395_2134 PF02801 Beta-ketoacyl synthase, C-terminal domain VC395_2135 PF00550 Phosphopantetheine attachment site VC395_2137 PF00698 Acyl transferase domain VC395_2138 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VC395_2138 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VC395_2139 PF02504 Fatty acid synthesis protein VC395_2140 PF01783 Ribosomal L32p protein family VC395_2141 PF02620 Large ribosomal RNA subunit accumulation protein YceD VC395_2142 PF02545 Maf-like protein VC395_2143 PF00849 RNA pseudouridylate synthase VC395_2143 PF01479 S4 domain VC395_2145 PF00575 S1 RNA binding domain VC395_2145 PF12111 Polyribonucleotide phosphorylase C terminal VC395_2145 PF10150 Ribonuclease E/G family VC395_2146 PF01740 STAS domain VC395_2146 PF00916 Sulfate permease family VC395_2148 PF00465 Iron-containing alcohol dehydrogenase VC395_2148 PF00171 Aldehyde dehydrogenase family VC395_2150 PF01914 MarC family integral membrane protein VC395_2151 PF02774 Semialdehyde dehydrogenase, dimerisation domain VC395_2151 PF01118 Semialdehyde dehydrogenase, NAD binding domain VC395_2152 PF03553 Na+/H+ antiporter family VC395_2154 PF04245 37-kD nucleoid-associated bacterial protein VC395_2155 PF07208 Protein of unknown function (DUF1414) VC395_2156 PF11893 Domain of unknown function (DUF3413) VC395_2156 PF00884 Sulfatase VC395_2157 PF00850 Histone deacetylase domain VC395_2158 PF01751 Toprim domain VC395_2158 PF01131 DNA topoisomerase VC395_2159 PF00462 Glutaredoxin VC395_2160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VC395_2160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VC395_2163 PF04333 MlaA lipoprotein VC395_2165 PF03918 Cytochrome C biogenesis protein VC395_2166 PF08534 Redoxin VC395_2167 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VC395_2167 PF01578 Cytochrome C assembly protein VC395_2168 PF03100 CcmE VC395_2169 PF04995 Heme exporter protein D (CcmD) VC395_2170 PF01578 Cytochrome C assembly protein VC395_2171 PF03379 CcmB protein VC395_2172 PF00005 ABC transporter VC395_2174 PF01584 CheW-like domain VC395_2176 PF13614 AAA domain VC395_2177 PF00072 Response regulator receiver domain VC395_2177 PF01339 CheB methylesterase VC395_2178 PF07194 P2 response regulator binding domain VC395_2178 PF02895 Signal transducing histidine kinase, homodimeric domain VC395_2178 PF01627 Hpt domain VC395_2178 PF01584 CheW-like domain VC395_2178 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_2179 PF04344 Chemotaxis phosphatase, CheZ VC395_2180 PF00072 Response regulator receiver domain VC395_2181 PF04545 Sigma-70, region 4 VC395_2181 PF04542 Sigma-70 region 2 VC395_2181 PF04539 Sigma-70 region 3 VC395_2182 PF10609 NUBPL iron-transfer P-loop NTPase VC395_2183 PF00448 SRP54-type protein, GTPase domain VC395_2184 PF00771 FHIPEP family VC395_2185 PF00300 Histidine phosphatase superfamily (branch 1) VC395_2187 PF00675 Insulinase (Peptidase family M16) VC395_2187 PF05193 Peptidase M16 inactive domain VC395_2189 PF03485 Arginyl tRNA synthetase N terminal domain VC395_2189 PF00750 tRNA synthetases class I (R) VC395_2189 PF05746 DALR anticodon binding domain VC395_2192 PF07670 Nucleoside recognition VC395_2192 PF02421 Ferrous iron transport protein B VC395_2192 PF07664 Ferrous iron transport protein B C terminus VC395_2193 PF04023 FeoA domain VC395_2195 PF02311 AraC-like ligand binding domain VC395_2195 PF12833 Helix-turn-helix domain VC395_2196 PF01297 Zinc-uptake complex component A periplasmic VC395_2197 PF00005 ABC transporter VC395_2198 PF00950 ABC 3 transport family VC395_2199 PF02629 CoA binding domain VC395_2199 PF00549 CoA-ligase VC395_2200 PF00549 CoA-ligase VC395_2200 PF08442 ATP-grasp domain VC395_2201 PF00364 Biotin-requiring enzyme VC395_2201 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VC395_2201 PF02817 e3 binding domain VC395_2202 PF02779 Transketolase, pyrimidine binding domain VC395_2202 PF16870 2-oxoglutarate dehydrogenase C-terminal VC395_2202 PF16078 2-oxoglutarate dehydrogenase N-terminus VC395_2202 PF00676 Dehydrogenase E1 component VC395_2203 PF13085 2Fe-2S iron-sulfur cluster binding domain VC395_2204 PF00890 FAD binding domain VC395_2204 PF02910 Fumarate reductase flavoprotein C-term VC395_2205 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VC395_2206 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VC395_2207 PF00285 Citrate synthase, C-terminal domain VC395_2208 PF01784 NIF3 (NGG1p interacting factor 3) VC395_2210 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VC395_2210 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VC395_2210 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VC395_2210 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VC395_2211 PF17206 SeqA protein N-terminal domain VC395_2211 PF03925 SeqA protein C-terminal domain VC395_2212 PF12697 Alpha/beta hydrolase family VC395_2214 PF00258 Flavodoxin VC395_2215 PF04172 LrgB-like family VC395_2216 PF03788 LrgA family VC395_2218 PF03466 LysR substrate binding domain VC395_2218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_2220 PF01475 Ferric uptake regulator family VC395_2221 PF01118 Semialdehyde dehydrogenase, NAD binding domain VC395_2221 PF02774 Semialdehyde dehydrogenase, dimerisation domain VC395_2222 PF11890 Domain of unknown function (DUF3410) VC395_2222 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VC395_2222 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VC395_2223 PF00109 Beta-ketoacyl synthase, N-terminal domain VC395_2223 PF02801 Beta-ketoacyl synthase, C-terminal domain VC395_2224 PF01266 FAD dependent oxidoreductase VC395_2224 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VC395_2225 PF03358 NADPH-dependent FMN reductase VC395_2226 PF08891 YfcL protein VC395_2227 PF04315 Elongation factor P hydroxylase VC395_2229 PF03458 UPF0126 domain VC395_2230 PF01264 Chorismate synthase VC395_2232 PF05175 Methyltransferase small domain VC395_2233 PF01713 Smr domain VC395_2234 PF01312 FlhB HrpN YscU SpaS Family VC395_2235 PF01311 Bacterial export proteins, family 1 VC395_2236 PF01313 Bacterial export proteins, family 3 VC395_2237 PF00813 FliP family VC395_2238 PF04347 Flagellar biosynthesis protein, FliO VC395_2239 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VC395_2240 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VC395_2240 PF02154 Flagellar motor switch protein FliM VC395_2241 PF03748 Flagellar basal body-associated protein FliL VC395_2244 PF18269 T3SS EscN ATPase C-terminal domain VC395_2244 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VC395_2245 PF02108 Flagellar assembly protein FliH VC395_2246 PF01706 FliG C-terminal domain VC395_2246 PF14842 FliG N-terminal domain VC395_2246 PF14841 FliG middle domain VC395_2247 PF08345 Flagellar M-ring protein C-terminal VC395_2247 PF01514 Secretory protein of YscJ/FliF family VC395_2248 PF02049 Flagellar hook-basal body complex protein FliE VC395_2249 PF02954 Bacterial regulatory protein, Fis family VC395_2249 PF00072 Response regulator receiver domain VC395_2249 PF00158 Sigma-54 interaction domain VC395_2250 PF13493 Domain of unknown function (DUF4118) VC395_2250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_2250 PF00512 His Kinase A (phospho-acceptor) domain VC395_2250 PF00989 PAS fold VC395_2250 PF08447 PAS fold VC395_2250 PF13426 PAS domain VC395_2251 PF02954 Bacterial regulatory protein, Fis family VC395_2251 PF00158 Sigma-54 interaction domain VC395_2251 PF00072 Response regulator receiver domain VC395_2252 PF02561 Flagellar protein FliS VC395_2254 PF07196 Flagellin hook IN motif VC395_2254 PF02465 Flagellar hook-associated protein 2 N-terminus VC395_2254 PF07195 Flagellar hook-associated protein 2 C-terminus VC395_2255 PF03646 FlaG protein VC395_2256 PF00669 Bacterial flagellin N-terminal helical region VC395_2256 PF07196 Flagellin hook IN motif VC395_2256 PF00700 Bacterial flagellin C-terminal helical region VC395_2257 PF00669 Bacterial flagellin N-terminal helical region VC395_2257 PF00700 Bacterial flagellin C-terminal helical region VC395_2257 PF07196 Flagellin hook IN motif VC395_2258 PF07196 Flagellin hook IN motif VC395_2258 PF00669 Bacterial flagellin N-terminal helical region VC395_2258 PF00700 Bacterial flagellin C-terminal helical region VC395_2259 PF04261 Dyp-type peroxidase family VC395_2260 PF11143 Protein of unknown function (DUF2919) VC395_2264 PF03960 ArsC family VC395_2266 PF01546 Peptidase family M20/M25/M40 VC395_2266 PF07687 Peptidase dimerisation domain VC395_2267 PF02557 D-alanyl-D-alanine carboxypeptidase VC395_2270 PF06804 NlpB/DapX lipoprotein VC395_2271 PF00701 Dihydrodipicolinate synthetase family VC395_2274 PF00578 AhpC/TSA family VC395_2275 PF02743 Cache domain VC395_2275 PF00672 HAMP domain VC395_2275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_2276 PF01594 AI-2E family transporter VC395_2278 PF13181 Tetratricopeptide repeat VC395_2278 PF01435 Peptidase family M48 VC395_2279 PF03960 ArsC family VC395_2280 PF03358 NADPH-dependent FMN reductase VC395_2285 PF00860 Permease family VC395_2286 PF04073 Aminoacyl-tRNA editing domain VC395_2288 PF02872 5'-nucleotidase, C-terminal domain VC395_2288 PF00149 Calcineurin-like phosphoesterase VC395_2289 PF00793 DAHP synthetase I family VC395_2290 PF13369 Transglutaminase-like superfamily VC395_2291 PF04247 Invasion gene expression up-regulator, SirB VC395_2292 PF17827 PrmC N-terminal domain VC395_2292 PF13847 Methyltransferase domain VC395_2293 PF00472 RF-1 domain VC395_2293 PF03462 PCRF domain VC395_2294 PF01488 Shikimate / quinate 5-dehydrogenase VC395_2294 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VC395_2294 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VC395_2295 PF03550 Outer membrane lipoprotein LolB VC395_2296 PF00288 GHMP kinases N terminal domain VC395_2296 PF08544 GHMP kinases C terminal VC395_2297 PF14572 Phosphoribosyl synthetase-associated domain VC395_2297 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VC395_2298 PF01195 Peptidyl-tRNA hydrolase VC395_2299 PF06071 Protein of unknown function (DUF933) VC395_2299 PF01926 50S ribosome-binding GTPase VC395_2301 PF01797 Transposase IS200 like VC395_2303 PF07196 Flagellin hook IN motif VC395_2303 PF00700 Bacterial flagellin C-terminal helical region VC395_2303 PF00669 Bacterial flagellin N-terminal helical region VC395_2304 PF00669 Bacterial flagellin N-terminal helical region VC395_2304 PF07196 Flagellin hook IN motif VC395_2304 PF00700 Bacterial flagellin C-terminal helical region VC395_2307 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VC395_2307 PF07196 Flagellin hook IN motif VC395_2308 PF10135 Rod binding protein VC395_2308 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VC395_2309 PF02119 Flagellar P-ring protein VC395_2310 PF02107 Flagellar L-ring protein VC395_2311 PF00460 Flagella basal body rod protein VC395_2311 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VC395_2312 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VC395_2312 PF00460 Flagella basal body rod protein VC395_2313 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VC395_2313 PF00460 Flagella basal body rod protein VC395_2313 PF07559 Flagellar basal body protein FlaE VC395_2314 PF03963 Flagellar hook capping protein - N-terminal region VC395_2314 PF13860 FlgD Ig-like domain VC395_2314 PF13861 FlgD Tudor-like domain VC395_2315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VC395_2315 PF00460 Flagella basal body rod protein VC395_2316 PF00460 Flagella basal body rod protein VC395_2317 PF03705 CheR methyltransferase, all-alpha domain VC395_2317 PF01739 CheR methyltransferase, SAM binding domain VC395_2318 PF01584 CheW-like domain VC395_2318 PF00072 Response regulator receiver domain VC395_2325 PF00550 Phosphopantetheine attachment site VC395_2325 PF08242 Methyltransferase domain VC395_2325 PF00668 Condensation domain VC395_2325 PF00501 AMP-binding enzyme VC395_2326 PF08021 Siderophore-interacting FAD-binding domain VC395_2326 PF04954 Siderophore-interacting protein VC395_2327 PF07715 TonB-dependent Receptor Plug Domain VC395_2329 PF01389 OmpA-like transmembrane domain VC395_2329 PF00691 OmpA family VC395_2330 PF00749 tRNA synthetases class I (E and Q), catalytic domain VC395_2331 PF00403 Heavy-metal-associated domain VC395_2333 PF03173 Putative carbohydrate binding domain VC395_2333 PF02838 Glycosyl hydrolase family 20, domain 2 VC395_2333 PF00728 Glycosyl hydrolase family 20, catalytic domain VC395_2333 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VC395_2336 PF01963 TraB family VC395_2338 PF01713 Smr domain VC395_2339 PF01479 S4 domain VC395_2339 PF00849 RNA pseudouridylate synthase VC395_2340 PF08448 PAS fold VC395_2340 PF00990 Diguanylate cyclase, GGDEF domain VC395_2342 PF02769 AIR synthase related protein, C-terminal domain VC395_2342 PF00586 AIR synthase related protein, N-terminal domain VC395_2343 PF00551 Formyl transferase VC395_2345 PF13230 Glutamine amidotransferases class-II VC395_2346 PF13580 SIS domain VC395_2347 PF09317 Domain of unknown function (DUF1974) VC395_2347 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VC395_2347 PF02770 Acyl-CoA dehydrogenase, middle domain VC395_2347 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VC395_2349 PF00929 Exonuclease VC395_2350 PF00075 RNase H VC395_2351 PF08241 Methyltransferase domain VC395_2352 PF16123 Hydroxyacylglutathione hydrolase C-terminus VC395_2352 PF00753 Metallo-beta-lactamase superfamily VC395_2353 PF01476 LysM domain VC395_2353 PF01464 Transglycosylase SLT domain VC395_2354 PF03372 Endonuclease/Exonuclease/phosphatase family VC395_2355 PF00543 Nitrogen regulatory protein P-II VC395_2356 PF05870 Phenolic acid decarboxylase (PAD) VC395_2357 PF00034 Cytochrome c VC395_2358 PF01171 PP-loop family VC395_2358 PF11734 TilS substrate C-terminal domain VC395_2358 PF09179 TilS substrate binding domain VC395_2360 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VC395_2361 PF02811 PHP domain VC395_2361 PF14579 Helix-hairpin-helix motif VC395_2361 PF01336 OB-fold nucleic acid binding domain VC395_2361 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VC395_2361 PF07733 Bacterial DNA polymerase III alpha NTPase domain VC395_2362 PF01351 Ribonuclease HII VC395_2363 PF02684 Lipid-A-disaccharide synthetase VC395_2364 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VC395_2364 PF00132 Bacterial transferase hexapeptide (six repeats) VC395_2365 PF07977 FabA-like domain VC395_2366 PF00132 Bacterial transferase hexapeptide (six repeats) VC395_2366 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VC395_2367 PF03938 Outer membrane protein (OmpH-like) VC395_2368 PF01103 Surface antigen VC395_2368 PF07244 Surface antigen variable number repeat VC395_2369 PF17820 PDZ domain VC395_2369 PF02163 Peptidase family M50 VC395_2370 PF13288 DXP reductoisomerase C-terminal domain VC395_2370 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VC395_2370 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VC395_2372 PF01255 Putative undecaprenyl diphosphate synthase VC395_2373 PF01765 Ribosome recycling factor VC395_2374 PF00696 Amino acid kinase family VC395_2375 PF00889 Elongation factor TS VC395_2376 PF00318 Ribosomal protein S2 VC395_2377 PF00557 Metallopeptidase family M24 VC395_2378 PF01966 HD domain VC395_2378 PF08335 GlnD PII-uridylyltransferase VC395_2378 PF01909 Nucleotidyltransferase domain VC395_2380 PF11944 Protein of unknown function (DUF3461) VC395_2381 PF04608 Phosphatidylglycerophosphatase A VC395_2382 PF00586 AIR synthase related protein, N-terminal domain VC395_2382 PF02769 AIR synthase related protein, C-terminal domain VC395_2383 PF01029 NusB family VC395_2384 PF00885 6,7-dimethyl-8-ribityllumazine synthase VC395_2385 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VC395_2385 PF00925 GTP cyclohydrolase II VC395_2386 PF00677 Lumazine binding domain VC395_2387 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VC395_2387 PF01872 RibD C-terminal domain VC395_2388 PF03477 ATP cone domain VC395_2389 PF00171 Aldehyde dehydrogenase family VC395_2390 PF00696 Amino acid kinase family VC395_2390 PF01472 PUA domain VC395_2391 PF07417 Sigma factor-binding transcriptional regulator Crl VC395_2393 PF00156 Phosphoribosyl transferase domain VC395_2394 PF00860 Permease family VC395_2395 PF07687 Peptidase dimerisation domain VC395_2395 PF01546 Peptidase family M20/M25/M40 VC395_2396 PF08443 RimK-like ATP-grasp domain VC395_2396 PF18030 RimK PreATP-grasp domain VC395_2397 PF18030 RimK PreATP-grasp domain VC395_2397 PF08443 RimK-like ATP-grasp domain VC395_2399 PF00209 Sodium:neurotransmitter symporter family VC395_2401 PF17158 Membrane-associated sensor, integral membrane domain VC395_2401 PF00990 Diguanylate cyclase, GGDEF domain VC395_2403 PF11798 IMS family HHH motif VC395_2403 PF00817 impB/mucB/samB family VC395_2405 PF02424 ApbE family VC395_2406 PF00175 Oxidoreductase NAD-binding domain VC395_2406 PF00970 Oxidoreductase FAD-binding domain VC395_2406 PF00111 2Fe-2S iron-sulfur cluster binding domain VC395_2407 PF02508 Rnf-Nqr subunit, membrane protein VC395_2408 PF02508 Rnf-Nqr subunit, membrane protein VC395_2409 PF04205 FMN-binding domain VC395_2410 PF03116 NQR2, RnfD, RnfE family VC395_2411 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VC395_2411 PF11973 NQRA C-terminal domain VC395_2412 PF01722 BolA-like protein VC395_2413 PF05175 Methyltransferase small domain VC395_2415 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VC395_2416 PF07690 Major Facilitator Superfamily VC395_2418 PF04545 Sigma-70, region 4 VC395_2418 PF04542 Sigma-70 region 2 VC395_2421 PF03502 Nucleoside-specific channel-forming protein, Tsx VC395_2423 PF02558 Ketopantoate reductase PanE/ApbA VC395_2423 PF08546 Ketopantoate reductase PanE/ApbA C terminal VC395_2424 PF01965 DJ-1/PfpI family VC395_2425 PF00266 Aminotransferase class-V VC395_2426 PF02657 Fe-S metabolism associated domain VC395_2427 PF00899 ThiF family VC395_2428 PF03562 MltA specific insert domain VC395_2428 PF06725 3D domain VC395_2432 PF00696 Amino acid kinase family VC395_2432 PF00583 Acetyltransferase (GNAT) family VC395_2435 PF13538 UvrD-like helicase C-terminal domain VC395_2436 PF13361 UvrD-like helicase C-terminal domain VC395_2436 PF00580 UvrD/REP helicase N-terminal domain VC395_2436 PF12705 PD-(D/E)XK nuclease superfamily VC395_2438 PF17946 RecC C-terminal domain VC395_2442 PF07130 YebG protein VC395_2444 PF14602 Hexapeptide repeat of succinyl-transferase VC395_2444 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VC395_2447 PF00583 Acetyltransferase (GNAT) family VC395_2448 PF02080 TrkA-C domain VC395_2448 PF18030 RimK PreATP-grasp domain VC395_2448 PF08443 RimK-like ATP-grasp domain VC395_2449 PF01544 CorA-like Mg2+ transporter protein VC395_2451 PF01588 Putative tRNA binding domain VC395_2452 PF00356 Bacterial regulatory proteins, lacI family VC395_2453 PF02929 Beta galactosidase small chain VC395_2453 PF16353 Domain of unknown function(DUF4981) VC395_2453 PF00703 Glycosyl hydrolases family 2 VC395_2453 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VC395_2453 PF02837 Glycosyl hydrolases family 2, sugar binding domain VC395_2455 PF00072 Response regulator receiver domain VC395_2456 PF00501 AMP-binding enzyme VC395_2457 PF14492 Elongation Factor G, domain II VC395_2457 PF03144 Elongation factor Tu domain 2 VC395_2457 PF03764 Elongation factor G, domain IV VC395_2457 PF00009 Elongation factor Tu GTP binding domain VC395_2457 PF00679 Elongation factor G C-terminus VC395_2458 PF18073 Rubredoxin metal binding domain VC395_2460 PF18429 Domain of unknown function (DUF5609) VC395_2462 PF01048 Phosphorylase superfamily VC395_2463 PF01676 Metalloenzyme superfamily VC395_2464 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VC395_2464 PF02885 Glycosyl transferase family, helical bundle domain VC395_2464 PF00591 Glycosyl transferase family, a/b domain VC395_2465 PF01791 DeoC/LacD family aldolase VC395_2467 PF07670 Nucleoside recognition VC395_2467 PF07662 Na+ dependent nucleoside transporter C-terminus VC395_2467 PF01773 Na+ dependent nucleoside transporter N-terminus VC395_2468 PF01026 TatD related DNase VC395_2470 PF03883 Peroxide stress protein YaaA VC395_2471 PF01235 Sodium:alanine symporter family VC395_2474 PF03167 Uracil DNA glycosylase superfamily VC395_2475 PF01261 Xylose isomerase-like TIM barrel VC395_2476 PF01228 Glycine radical VC395_2477 PF14821 Threonine synthase N terminus VC395_2477 PF00291 Pyridoxal-phosphate dependent enzyme VC395_2478 PF00288 GHMP kinases N terminal domain VC395_2478 PF08544 GHMP kinases C terminal VC395_2479 PF01842 ACT domain VC395_2479 PF00696 Amino acid kinase family VC395_2479 PF00742 Homoserine dehydrogenase VC395_2479 PF13840 ACT domain VC395_2479 PF03447 Homoserine dehydrogenase, NAD binding domain VC395_2481 PF03737 Aldolase/RraA VC395_2483 PF00072 Response regulator receiver domain VC395_2483 PF00486 Transcriptional regulatory protein, C terminal VC395_2484 PF00989 PAS fold VC395_2484 PF01627 Hpt domain VC395_2484 PF18415 Histidine kinase receptor ArcB trans-membrane domain VC395_2484 PF00512 His Kinase A (phospho-acceptor) domain VC395_2484 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_2484 PF00072 Response regulator receiver domain VC395_2485 PF01590 GAF domain VC395_2485 PF00360 Phytochrome region VC395_2485 PF00990 Diguanylate cyclase, GGDEF domain VC395_2485 PF00563 EAL domain VC395_2486 PF16199 Radical_SAM C-terminal domain VC395_2486 PF04055 Radical SAM superfamily VC395_2488 PF01645 Conserved region in glutamate synthase VC395_2488 PF01493 GXGXG motif VC395_2488 PF00310 Glutamine amidotransferases class-II VC395_2488 PF04898 Glutamate synthase central domain VC395_2489 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VC395_2489 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC395_2491 PF00310 Glutamine amidotransferases class-II VC395_2491 PF01645 Conserved region in glutamate synthase VC395_2491 PF01493 GXGXG motif VC395_2491 PF04898 Glutamate synthase central domain VC395_2492 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VC395_2492 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC395_2494 PF01048 Phosphorylase superfamily VC395_2496 PF01497 Periplasmic binding protein VC395_2497 PF03458 UPF0126 domain VC395_2498 PF03466 LysR substrate binding domain VC395_2498 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_2499 PF01925 Sulfite exporter TauE/SafE VC395_2500 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VC395_2504 PF02142 MGS-like domain VC395_2504 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VC395_2504 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VC395_2505 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VC395_2505 PF00117 Glutamine amidotransferase class-I VC395_2506 PF05173 Dihydrodipicolinate reductase, C-terminus VC395_2506 PF01113 Dihydrodipicolinate reductase, N-terminus VC395_2507 PF00293 NUDIX domain VC395_2509 PF01043 SecA preprotein cross-linking domain VC395_2509 PF07516 SecA Wing and Scaffold domain VC395_2509 PF07517 SecA DEAD-like domain VC395_2509 PF02810 SEC-C motif VC395_2511 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VC395_2512 PF12327 FtsZ family, C-terminal domain VC395_2512 PF00091 Tubulin/FtsZ family, GTPase domain VC395_2513 PF02491 SHS2 domain inserted in FTSA VC395_2514 PF03799 Cell division protein FtsQ VC395_2514 PF08478 POTRA domain, FtsQ-type VC395_2515 PF01225 Mur ligase family, catalytic domain VC395_2515 PF02875 Mur ligase family, glutamate ligase domain VC395_2515 PF08245 Mur ligase middle domain VC395_2516 PF04101 Glycosyltransferase family 28 C-terminal domain VC395_2516 PF03033 Glycosyltransferase family 28 N-terminal domain VC395_2517 PF01098 Cell cycle protein VC395_2518 PF08245 Mur ligase middle domain VC395_2518 PF02875 Mur ligase family, glutamate ligase domain VC395_2519 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VC395_2519 PF00953 Glycosyl transferase family 4 VC395_2520 PF01225 Mur ligase family, catalytic domain VC395_2520 PF08245 Mur ligase middle domain VC395_2520 PF02875 Mur ligase family, glutamate ligase domain VC395_2521 PF08245 Mur ligase middle domain VC395_2521 PF02875 Mur ligase family, glutamate ligase domain VC395_2521 PF01225 Mur ligase family, catalytic domain VC395_2522 PF03717 Penicillin-binding Protein dimerisation domain VC395_2522 PF00905 Penicillin binding protein transpeptidase domain VC395_2523 PF04999 Cell division protein FtsL VC395_2524 PF01795 MraW methylase family VC395_2527 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VC395_2527 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC395_2528 PF00364 Biotin-requiring enzyme VC395_2528 PF02817 e3 binding domain VC395_2528 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VC395_2529 PF17831 Pyruvate dehydrogenase E1 component middle domain VC395_2529 PF00456 Transketolase, thiamine diphosphate binding domain VC395_2530 PF07729 FCD domain VC395_2530 PF00392 Bacterial regulatory proteins, gntR family VC395_2531 PF02872 5'-nucleotidase, C-terminal domain VC395_2531 PF00149 Calcineurin-like phosphoesterase VC395_2532 PF17768 RecJ OB domain VC395_2532 PF02272 DHHA1 domain VC395_2532 PF01368 DHH family VC395_2533 PF10411 Disulfide bond isomerase protein N-terminus VC395_2533 PF13098 Thioredoxin-like domain VC395_2534 PF02899 Phage integrase, N-terminal SAM-like domain VC395_2534 PF00589 Phage integrase family VC395_2535 PF00258 Flavodoxin VC395_2536 PF01510 N-acetylmuramoyl-L-alanine amidase VC395_2537 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VC395_2537 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VC395_2538 PF00114 Pilin (bacterial filament) VC395_2538 PF07963 Prokaryotic N-terminal methylation motif VC395_2539 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VC395_2539 PF00437 Type II/IV secretion system protein VC395_2540 PF00482 Type II secretion system (T2SS), protein F VC395_2541 PF01478 Type IV leader peptidase family VC395_2541 PF06750 Bacterial Peptidase A24 N-terminal domain VC395_2542 PF01121 Dephospho-CoA kinase VC395_2543 PF07072 Cell division protein VC395_2544 PF03884 DNA gyrase inhibitor YacG VC395_2545 PF03989 DNA gyrase C-terminal domain, beta-propeller VC395_2545 PF00521 DNA gyrase/topoisomerase IV, subunit A VC395_2546 PF00204 DNA gyrase B VC395_2546 PF00986 DNA gyrase B subunit, carboxyl terminus VC395_2546 PF01751 Toprim domain VC395_2546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_2547 PF05728 Uncharacterised protein family (UPF0227) VC395_2548 PF00149 Calcineurin-like phosphoesterase VC395_2549 PF06853 Protein of unknown function (DUF1249) VC395_2550 PF00293 NUDIX domain VC395_2551 PF02321 Outer membrane efflux protein VC395_2552 PF00294 pfkB family carbohydrate kinase VC395_2552 PF01467 Cytidylyltransferase-like VC395_2553 PF03710 Glutamate-ammonia ligase adenylyltransferase VC395_2553 PF08335 GlnD PII-uridylyltransferase VC395_2554 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_2554 PF02743 Cache domain VC395_2554 PF00672 HAMP domain VC395_2555 PF01928 CYTH domain VC395_2556 PF01865 Protein of unknown function DUF47 VC395_2557 PF01384 Phosphate transporter family VC395_2558 PF08239 Bacterial SH3 domain VC395_2560 PF13401 AAA domain VC395_2560 PF01471 Putative peptidoglycan binding domain VC395_2561 PF01743 Poly A polymerase head domain VC395_2561 PF01966 HD domain VC395_2561 PF12627 Probable RNA and SrmB- binding site of polymerase A VC395_2562 PF00113 Enolase, C-terminal TIM barrel domain VC395_2562 PF03952 Enolase, N-terminal domain VC395_2563 PF00117 Glutamine amidotransferase class-I VC395_2563 PF06418 CTP synthase N-terminus VC395_2565 PF03819 MazG nucleotide pyrophosphohydrolase domain VC395_2566 PF04607 Region found in RelA / SpoT proteins VC395_2566 PF02824 TGS domain VC395_2566 PF13291 ACT domain VC395_2567 PF05958 tRNA (Uracil-5-)-methyltransferase VC395_2567 PF01938 TRAM domain VC395_2568 PF00512 His Kinase A (phospho-acceptor) domain VC395_2568 PF00672 HAMP domain VC395_2568 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_2568 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VC395_2568 PF01627 Hpt domain VC395_2568 PF00072 Response regulator receiver domain VC395_2569 PF00990 Diguanylate cyclase, GGDEF domain VC395_2572 PF01648 4'-phosphopantetheinyl transferase superfamily VC395_2573 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VC395_2574 PF02565 Recombination protein O C terminal VC395_2574 PF11967 Recombination protein O N terminal VC395_2575 PF07650 KH domain VC395_2575 PF01926 50S ribosome-binding GTPase VC395_2576 PF14622 Ribonuclease-III-like VC395_2576 PF00035 Double-stranded RNA binding motif VC395_2577 PF10502 Signal peptidase, peptidase S26 VC395_2578 PF06421 GTP-binding protein LepA C-terminus VC395_2578 PF00679 Elongation factor G C-terminus VC395_2578 PF03144 Elongation factor Tu domain 2 VC395_2578 PF00009 Elongation factor Tu GTP binding domain VC395_2580 PF17188 MucB/RseB C-terminal domain VC395_2580 PF03888 MucB/RseB N-terminal domain VC395_2581 PF03873 Anti sigma-E protein RseA, C-terminal domain VC395_2581 PF03872 Anti sigma-E protein RseA, N-terminal domain VC395_2582 PF08281 Sigma-70, region 4 VC395_2582 PF04542 Sigma-70 region 2 VC395_2584 PF00890 FAD binding domain VC395_2584 PF02910 Fumarate reductase flavoprotein C-term VC395_2586 PF03937 Flavinator of succinate dehydrogenase VC395_2589 PF01494 FAD binding domain VC395_2590 PF01494 FAD binding domain VC395_2591 PF03695 Uncharacterised protein family (UPF0149) VC395_2592 PF05164 Cell division protein ZapA VC395_2593 PF01812 5-formyltetrahydrofolate cyclo-ligase family VC395_2594 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VC395_2595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VC395_2595 PF01842 ACT domain VC395_2595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VC395_2596 PF10369 Small subunit of acetolactate synthase VC395_2597 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VC395_2597 PF00205 Thiamine pyrophosphate enzyme, central domain VC395_2597 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VC395_2598 PF00501 AMP-binding enzyme VC395_2599 PF03466 LysR substrate binding domain VC395_2599 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_2602 PF01569 PAP2 superfamily VC395_2604 PF00682 HMGL-like VC395_2604 PF08502 LeuA allosteric (dimerisation) domain VC395_2605 PF00180 Isocitrate/isopropylmalate dehydrogenase VC395_2606 PF00330 Aconitase family (aconitate hydratase) VC395_2607 PF00694 Aconitase C-terminal domain VC395_2611 PF00072 Response regulator receiver domain VC395_2613 PF03739 Lipopolysaccharide export system permease LptF/LptG VC395_2614 PF03739 Lipopolysaccharide export system permease LptF/LptG VC395_2615 PF02789 Cytosol aminopeptidase family, N-terminal domain VC395_2615 PF00883 Cytosol aminopeptidase family, catalytic domain VC395_2616 PF04364 DNA polymerase III chi subunit, HolC VC395_2617 PF08264 Anticodon-binding domain of tRNA VC395_2617 PF00133 tRNA synthetases class I (I, L, M and V) VC395_2617 PF10458 Valyl tRNA synthetase tRNA binding arm VC395_2618 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VC395_2618 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VC395_2619 PF00849 RNA pseudouridylate synthase VC395_2620 PF00176 SNF2 family N-terminal domain VC395_2620 PF18337 RapA N-terminal Tudor like domain VC395_2620 PF18339 RapA N-terminal Tudor like domain 1 VC395_2620 PF12137 RNA polymerase recycling family C-terminal VC395_2620 PF00271 Helicase conserved C-terminal domain VC395_2621 PF02562 PhoH-like protein VC395_2621 PF13638 PIN domain VC395_2622 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VC395_2622 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VC395_2624 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VC395_2624 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VC395_2625 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VC395_2625 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VC395_2626 PF01042 Endoribonuclease L-PSP VC395_2627 PF01553 Acyltransferase VC395_2628 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VC395_2629 PF01722 BolA-like protein VC395_2631 PF05494 MlaC protein VC395_2632 PF02470 MlaD protein VC395_2633 PF02405 Permease MlaE VC395_2634 PF00005 ABC transporter VC395_2636 PF01699 Sodium/calcium exchanger protein VC395_2637 PF01380 SIS domain VC395_2637 PF00571 CBS domain VC395_2640 PF03968 OstA-like protein VC395_2641 PF00005 ABC transporter VC395_2641 PF12399 Branched-chain amino acid ATP-binding cassette transporter VC395_2642 PF04552 Sigma-54, DNA binding domain VC395_2642 PF00309 Sigma-54 factor, Activator interacting domain (AID) VC395_2642 PF04963 Sigma-54 factor, core binding domain VC395_2643 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VC395_2644 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VC395_2645 PF03668 P-loop ATPase protein family VC395_2646 PF00381 PTS HPr component phosphorylation site VC395_2647 PF03448 MgtE intracellular N domain VC395_2647 PF00571 CBS domain VC395_2647 PF01769 Divalent cation transporter VC395_2648 PF01523 Putative modulator of DNA gyrase VC395_2649 PF04751 Protein of unknown function (DUF615) VC395_2650 PF00005 ABC transporter VC395_2651 PF00528 Binding-protein-dependent transport system inner membrane component VC395_2654 PF02441 Flavoprotein VC395_2655 PF01225 Mur ligase family, catalytic domain VC395_2655 PF02875 Mur ligase family, glutamate ligase domain VC395_2655 PF08245 Mur ligase middle domain VC395_2657 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VC395_2658 PF00719 Inorganic pyrophosphatase VC395_2659 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VC395_2660 PF04357 TamB, inner membrane protein subunit of TAM complex VC395_2661 PF17243 POTRA domain TamA domain 1 VC395_2661 PF07244 Surface antigen variable number repeat VC395_2661 PF01103 Surface antigen VC395_2662 PF01625 Peptide methionine sulfoxide reductase VC395_2663 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VC395_2664 PF10795 Protein of unknown function (DUF2607) VC395_2666 PF00005 ABC transporter VC395_2666 PF02687 FtsX-like permease family VC395_2666 PF12704 MacB-like periplasmic core domain VC395_2671 PF00009 Elongation factor Tu GTP binding domain VC395_2672 PF01507 Phosphoadenosine phosphosulfate reductase family VC395_2673 PF10414 Sirohaem synthase dimerisation region VC395_2673 PF14824 Sirohaem biosynthesis protein central VC395_2673 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VC395_2674 PF00149 Calcineurin-like phosphoesterase VC395_2674 PF02872 5'-nucleotidase, C-terminal domain VC395_2676 PF03880 DbpA RNA binding domain VC395_2676 PF00271 Helicase conserved C-terminal domain VC395_2676 PF00270 DEAD/DEAH box helicase VC395_2677 PF13673 Acetyltransferase (GNAT) domain VC395_2678 PF00892 EamA-like transporter family VC395_2679 PF08525 Opacity-associated protein A N-terminal motif VC395_2679 PF04225 Opacity-associated protein A LysM-like domain VC395_2680 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VC395_2680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VC395_2681 PF01797 Transposase IS200 like VC395_2683 PF01196 Ribosomal protein L17 VC395_2684 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VC395_2684 PF01000 RNA polymerase Rpb3/RpoA insert domain VC395_2684 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VC395_2685 PF00163 Ribosomal protein S4/S9 N-terminal domain VC395_2685 PF01479 S4 domain VC395_2686 PF00411 Ribosomal protein S11 VC395_2687 PF00416 Ribosomal protein S13/S18 VC395_2688 PF00444 Ribosomal protein L36 VC395_2689 PF00344 SecY translocase VC395_2690 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VC395_2691 PF00327 Ribosomal protein L30p/L7e VC395_2692 PF00333 Ribosomal protein S5, N-terminal domain VC395_2692 PF03719 Ribosomal protein S5, C-terminal domain VC395_2693 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VC395_2694 PF00347 Ribosomal protein L6 VC395_2695 PF00410 Ribosomal protein S8 VC395_2696 PF00253 Ribosomal protein S14p/S29e VC395_2697 PF00281 Ribosomal protein L5 VC395_2697 PF00673 ribosomal L5P family C-terminus VC395_2698 PF00467 KOW motif VC395_2698 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VC395_2699 PF00238 Ribosomal protein L14p/L23e VC395_2700 PF00366 Ribosomal protein S17 VC395_2701 PF00831 Ribosomal L29 protein VC395_2702 PF00252 Ribosomal protein L16p/L10e VC395_2703 PF07650 KH domain VC395_2703 PF00189 Ribosomal protein S3, C-terminal domain VC395_2704 PF00237 Ribosomal protein L22p/L17e VC395_2705 PF00203 Ribosomal protein S19 VC395_2706 PF03947 Ribosomal Proteins L2, C-terminal domain VC395_2706 PF00181 Ribosomal Proteins L2, RNA binding domain VC395_2707 PF00276 Ribosomal protein L23 VC395_2708 PF00573 Ribosomal protein L4/L1 family VC395_2709 PF00297 Ribosomal protein L3 VC395_2710 PF00338 Ribosomal protein S10p/S20e VC395_2711 PF08032 RNA 2'-O ribose methyltransferase substrate binding VC395_2711 PF00588 SpoU rRNA Methylase family VC395_2712 PF00575 S1 RNA binding domain VC395_2712 PF00773 RNB domain VC395_2712 PF08206 Ribonuclease B OB domain VC395_2712 PF08461 Ribonuclease R winged-helix domain VC395_2712 PF17876 Cold shock domain VC395_2713 PF11893 Domain of unknown function (DUF3413) VC395_2713 PF00884 Sulfatase VC395_2714 PF08238 Sel1 repeat VC395_2715 PF00709 Adenylosuccinate synthetase VC395_2716 PF01112 Asparaginase VC395_2717 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VC395_2719 PF00999 Sodium/hydrogen exchanger family VC395_2719 PF02254 TrkA-N domain VC395_2720 PF02525 Flavodoxin-like fold VC395_2721 PF00005 ABC transporter VC395_2721 PF12848 ABC transporter VC395_2723 PF00561 alpha/beta hydrolase fold VC395_2725 PF06794 Uncharacterised protein family (UPF0270) VC395_2726 PF00485 Phosphoribulokinase / Uridine kinase family VC395_2727 PF00027 Cyclic nucleotide-binding domain VC395_2727 PF13545 Crp-like helix-turn-helix domain VC395_2729 PF00171 Aldehyde dehydrogenase family VC395_2730 PF04958 Arginine N-succinyltransferase beta subunit VC395_2731 PF00202 Aminotransferase class-III VC395_2732 PF00117 Glutamine amidotransferase class-I VC395_2733 PF04055 Radical SAM superfamily VC395_2733 PF18693 TRAM domain VC395_2733 PF00919 Uncharacterized protein family UPF0004 VC395_2736 PF00579 tRNA synthetases class I (W and Y) VC395_2737 PF13419 Haloacid dehalogenase-like hydrolase VC395_2738 PF00834 Ribulose-phosphate 3 epimerase family VC395_2739 PF02086 D12 class N6 adenine-specific DNA methyltransferase VC395_2741 PF01761 3-dehydroquinate synthase VC395_2742 PF01202 Shikimate kinase VC395_2743 PF11741 AMIN domain VC395_2743 PF00263 Bacterial type II and III secretion system protein VC395_2743 PF03958 Bacterial type II/III secretion system short domain VC395_2743 PF07660 Secretin and TonB N terminus short domain VC395_2748 PF00905 Penicillin binding protein transpeptidase domain VC395_2748 PF00912 Transglycosylase VC395_2748 PF17092 Penicillin-binding protein OB-like domain VC395_2749 PF03466 LysR substrate binding domain VC395_2749 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_2750 PF00462 Glutaredoxin VC395_2750 PF08534 Redoxin VC395_2751 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VC395_2751 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC395_2754 PF00206 Lyase VC395_2754 PF14698 Argininosuccinate lyase C-terminal VC395_2755 PF00764 Arginosuccinate synthase VC395_2756 PF00696 Amino acid kinase family VC395_2757 PF02774 Semialdehyde dehydrogenase, dimerisation domain VC395_2757 PF01118 Semialdehyde dehydrogenase, NAD binding domain VC395_2758 PF01546 Peptidase family M20/M25/M40 VC395_2758 PF07687 Peptidase dimerisation domain VC395_2759 PF00311 Phosphoenolpyruvate carboxylase VC395_2762 PF06426 Serine acetyltransferase, N-terminal VC395_2762 PF00132 Bacterial transferase hexapeptide (six repeats) VC395_2764 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VC395_2764 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VC395_2766 PF02556 Preprotein translocase subunit SecB VC395_2767 PF00581 Rhodanese-like domain VC395_2768 PF00152 tRNA synthetases class II (D, K and N) VC395_2769 PF00890 FAD binding domain VC395_2769 PF02910 Fumarate reductase flavoprotein C-term VC395_2770 PF13085 2Fe-2S iron-sulfur cluster binding domain VC395_2770 PF13183 4Fe-4S dicluster domain VC395_2771 PF02300 Fumarate reductase subunit C VC395_2772 PF02313 Fumarate reductase subunit D VC395_2773 PF08207 Elongation factor P (EF-P) KOW-like domain VC395_2773 PF01132 Elongation factor P (EF-P) OB domain VC395_2773 PF09285 Elongation factor P, C-terminal VC395_2774 PF04055 Radical SAM superfamily VC395_2777 PF00118 TCP-1/cpn60 chaperonin family VC395_2778 PF00166 Chaperonin 10 Kd subunit VC395_2779 PF00455 DeoR C terminal sensor domain VC395_2779 PF08220 DeoR-like helix-turn-helix domain VC395_2783 PF00121 Triosephosphate isomerase VC395_2785 PF03737 Aldolase/RraA VC395_2786 PF01040 UbiA prenyltransferase family VC395_2787 PF10431 C-terminal, D2-small domain, of ClpB protein VC395_2787 PF07724 AAA domain (Cdc48 subfamily) VC395_2787 PF00004 ATPase family associated with various cellular activities (AAA) VC395_2788 PF00227 Proteasome subunit VC395_2789 PF05036 Sporulation related domain VC395_2790 PF00356 Bacterial regulatory proteins, lacI family VC395_2791 PF18074 Primosomal protein N C-terminal domain VC395_2791 PF00270 DEAD/DEAH box helicase VC395_2791 PF00271 Helicase conserved C-terminal domain VC395_2791 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VC395_2791 PF17764 3′ DNA-binding domain (3′BD) VC395_2792 PF01197 Ribosomal protein L31 VC395_2794 PF00390 Malic enzyme, N-terminal domain VC395_2794 PF03949 Malic enzyme, NAD binding domain VC395_2795 PF01340 Met Apo-repressor, MetJ VC395_2796 PF01053 Cys/Met metabolism PLP-dependent enzyme VC395_2797 PF00742 Homoserine dehydrogenase VC395_2797 PF03447 Homoserine dehydrogenase, NAD binding domain VC395_2797 PF00696 Amino acid kinase family VC395_2798 PF02219 Methylenetetrahydrofolate reductase VC395_2799 PF06005 Cell division protein ZapB VC395_2801 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VC395_2802 PF00365 Phosphofructokinase VC395_2803 PF16916 Dimerisation domain of Zinc Transporter VC395_2803 PF01545 Cation efflux family VC395_2805 PF00072 Response regulator receiver domain VC395_2805 PF00486 Transcriptional regulatory protein, C terminal VC395_2806 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_2806 PF00512 His Kinase A (phospho-acceptor) domain VC395_2806 PF16527 Two-component sensor protein CpxA, periplasmic domain VC395_2806 PF00672 HAMP domain VC395_2807 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VC395_2807 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VC395_2808 PF00588 SpoU rRNA Methylase family VC395_2809 PF04186 FxsA cytoplasmic membrane protein VC395_2810 PF00990 Diguanylate cyclase, GGDEF domain VC395_2810 PF17158 Membrane-associated sensor, integral membrane domain VC395_2811 PF00206 Lyase VC395_2811 PF10415 Fumarase C C-terminus VC395_2812 PF03605 Anaerobic c4-dicarboxylate membrane transporter VC395_2814 PF02683 Cytochrome C biogenesis protein transmembrane region VC395_2814 PF11412 Disulphide bond corrector protein DsbC VC395_2815 PF00072 Response regulator receiver domain VC395_2815 PF00196 Bacterial regulatory proteins, luxR family VC395_2816 PF02080 TrkA-C domain VC395_2816 PF00999 Sodium/hydrogen exchanger family VC395_2816 PF03471 Transporter associated domain VC395_2818 PF00474 Sodium:solute symporter family VC395_2819 PF02592 Putative vitamin uptake transporter VC395_2820 PF00625 Guanylate kinase VC395_2821 PF01192 RNA polymerase Rpb6 VC395_2822 PF02824 TGS domain VC395_2822 PF13291 ACT domain VC395_2822 PF04607 Region found in RelA / SpoT proteins VC395_2823 PF17191 RecG wedge domain VC395_2823 PF00271 Helicase conserved C-terminal domain VC395_2823 PF00270 DEAD/DEAH box helicase VC395_2824 PF00860 Permease family VC395_2825 PF00672 HAMP domain VC395_2825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_2825 PF00512 His Kinase A (phospho-acceptor) domain VC395_2826 PF00072 Response regulator receiver domain VC395_2826 PF00486 Transcriptional regulatory protein, C terminal VC395_2827 PF03449 Transcription elongation factor, N-terminal VC395_2827 PF01272 Transcription elongation factor, GreA/GreB, C-term VC395_2828 PF09371 Tex-like protein N-terminal domain VC395_2828 PF17674 HHH domain VC395_2828 PF16921 Tex protein YqgF-like domain VC395_2828 PF00575 S1 RNA binding domain VC395_2830 PF00561 alpha/beta hydrolase fold VC395_2831 PF00156 Phosphoribosyl transferase domain VC395_2832 PF01521 Iron-sulphur cluster biosynthesis VC395_2832 PF01106 NifU-like domain VC395_2833 PF00293 NUDIX domain VC395_2834 PF00459 Inositol monophosphatase family VC395_2835 PF01203 Type II secretion system (T2SS), protein N VC395_2836 PF04612 Type II secretion system (T2SS), protein M VC395_2837 PF12693 GspL periplasmic domain VC395_2837 PF05134 Type II secretion system (T2SS), protein L VC395_2838 PF03934 Type II secretion system (T2SS), protein K VC395_2839 PF11612 Type II secretion system (T2SS), protein J VC395_2839 PF07963 Prokaryotic N-terminal methylation motif VC395_2840 PF02501 Type II secretion system (T2SS), protein I VC395_2840 PF07963 Prokaryotic N-terminal methylation motif VC395_2841 PF12019 Type II transport protein GspH VC395_2842 PF07963 Prokaryotic N-terminal methylation motif VC395_2842 PF08334 Type II secretion system (T2SS), protein G VC395_2843 PF00482 Type II secretion system (T2SS), protein F VC395_2844 PF00437 Type II/IV secretion system protein VC395_2845 PF00263 Bacterial type II and III secretion system protein VC395_2845 PF03958 Bacterial type II/III secretion system short domain VC395_2846 PF11356 Type II secretion system protein C VC395_2847 PF01479 S4 domain VC395_2848 PF01430 Hsp33 protein VC395_2850 PF01293 Phosphoenolpyruvate carboxykinase VC395_2852 PF00583 Acetyltransferase (GNAT) family VC395_2852 PF09500 Putative thioesterase (yiiD_Cterm) VC395_2853 PF02580 D-Tyr-tRNA(Tyr) deacylase VC395_2854 PF03631 Virulence factor BrkB VC395_2855 PF03668 P-loop ATPase protein family VC395_2858 PF00120 Glutamine synthetase, catalytic domain VC395_2858 PF03951 Glutamine synthetase, beta-Grasp domain VC395_2860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_2860 PF00989 PAS fold VC395_2860 PF00512 His Kinase A (phospho-acceptor) domain VC395_2861 PF00158 Sigma-54 interaction domain VC395_2861 PF02954 Bacterial regulatory protein, Fis family VC395_2861 PF00072 Response regulator receiver domain VC395_2862 PF13188 PAS domain VC395_2862 PF03707 Bacterial signalling protein N terminal repeat VC395_2862 PF00990 Diguanylate cyclase, GGDEF domain VC395_2862 PF00563 EAL domain VC395_2863 PF00962 Adenosine/AMP deaminase VC395_A0006 PF01709 Transcriptional regulator VC395_A0007 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VC395_A0007 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VC395_A0008 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A0008 PF00672 HAMP domain VC395_A0008 PF17200 Single Cache domain 2 VC395_A0009 PF10928 Protein of unknown function (DUF2810) VC395_A0010 PF17874 MalT-like TPR region VC395_A0010 PF00196 Bacterial regulatory proteins, luxR family VC395_A0011 PF00343 Carbohydrate phosphorylase VC395_A0012 PF02446 4-alpha-glucanotransferase VC395_A0013 PF00128 Alpha amylase, catalytic domain VC395_A0013 PF02806 Alpha amylase, C-terminal all-beta domain VC395_A0013 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VC395_A0014 PF05638 Type VI secretion system effector, Hcp VC395_A0015 PF16671 Actin cross-linking domain VC395_A0015 PF04717 Type VI secretion system, phage-baseplate injector VC395_A0020 PF00842 Alanine racemase, C-terminal domain VC395_A0020 PF01757 Acyltransferase family VC395_A0020 PF01168 Alanine racemase, N-terminal domain VC395_A0022 PF00939 Sodium:sulfate symporter transmembrane region VC395_A0023 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VC395_A0024 PF08329 Chitinase A, N-terminal domain VC395_A0024 PF00704 Glycosyl hydrolases family 18 VC395_A0027 PF00672 HAMP domain VC395_A0027 PF02743 Cache domain VC395_A0027 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A0031 PF01569 PAP2 superfamily VC395_A0032 PF00375 Sodium:dicarboxylate symporter family VC395_A0034 PF02630 SCO1/SenC VC395_A0037 PF03616 Sodium/glutamate symporter VC395_A0038 PF12945 Flagellar protein YcgR VC395_A0038 PF07238 PilZ domain VC395_A0042 PF00529 HlyD membrane-fusion protein of T1SS VC395_A0042 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VC395_A0043 PF11742 Protein of unknown function (DUF3302) VC395_A0044 PF00990 Diguanylate cyclase, GGDEF domain VC395_A0047 PF01048 Phosphorylase superfamily VC395_A0049 PF08349 Protein of unknown function (DUF1722) VC395_A0050 PF13411 MerR HTH family regulatory protein VC395_A0051 PF00875 DNA photolyase VC395_A0051 PF03441 FAD binding domain of DNA photolyase VC395_A0052 PF17969 L,D-transpeptidase C-terminal domain VC395_A0052 PF03734 L,D-transpeptidase catalytic domain VC395_A0052 PF01476 LysM domain VC395_A0054 PF00270 DEAD/DEAH box helicase VC395_A0054 PF00271 Helicase conserved C-terminal domain VC395_A0056 PF00326 Prolyl oligopeptidase family VC395_A0056 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VC395_A0057 PF00593 TonB dependent receptor VC395_A0057 PF07715 TonB-dependent Receptor Plug Domain VC395_A0061 PF00672 HAMP domain VC395_A0061 PF12729 Four helix bundle sensory module for signal transduction VC395_A0061 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A0063 PF12849 PBP superfamily domain VC395_A0064 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A0065 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A0066 PF00005 ABC transporter VC395_A0067 PF03707 Bacterial signalling protein N terminal repeat VC395_A0067 PF00990 Diguanylate cyclase, GGDEF domain VC395_A0067 PF00563 EAL domain VC395_A0071 PF01740 STAS domain VC395_A0071 PF00916 Sulfate permease family VC395_A0073 PF01476 LysM domain VC395_A0073 PF08525 Opacity-associated protein A N-terminal motif VC395_A0073 PF01551 Peptidase family M23 VC395_A0074 PF13188 PAS domain VC395_A0074 PF00563 EAL domain VC395_A0074 PF00990 Diguanylate cyclase, GGDEF domain VC395_A0074 PF03707 Bacterial signalling protein N terminal repeat VC395_A0075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A0075 PF03466 LysR substrate binding domain VC395_A0076 PF07690 Major Facilitator Superfamily VC395_A0077 PF00376 MerR family regulatory protein VC395_A0077 PF09278 MerR, DNA binding VC395_A0081 PF00375 Sodium:dicarboxylate symporter family VC395_A0084 PF02001 Protein of unknown function DUF134 VC395_A0089 PF07504 Fungalysin/Thermolysin Propeptide Motif VC395_A0089 PF01483 Proprotein convertase P-domain VC395_A0089 PF01447 Thermolysin metallopeptidase, catalytic domain VC395_A0089 PF02868 Thermolysin metallopeptidase, alpha-helical domain VC395_A0091 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VC395_A0091 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VC395_A0092 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VC395_A0092 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VC395_A0093 PF00581 Rhodanese-like domain VC395_A0094 PF00196 Bacterial regulatory proteins, luxR family VC395_A0094 PF00563 EAL domain VC395_A0095 PF13419 Haloacid dehalogenase-like hydrolase VC395_A0096 PF00916 Sulfate permease family VC395_A0096 PF01740 STAS domain VC395_A0097 PF00849 RNA pseudouridylate synthase VC395_A0109 PF17871 AAA lid domain VC395_A0109 PF00004 ATPase family associated with various cellular activities (AAA) VC395_A0109 PF07724 AAA domain (Cdc48 subfamily) VC395_A0109 PF10431 C-terminal, D2-small domain, of ClpB protein VC395_A0116 PF16671 Actin cross-linking domain VC395_A0116 PF04717 Type VI secretion system, phage-baseplate injector VC395_A0120 PF05025 RbsD / FucU transport protein family VC395_A0121 PF00005 ABC transporter VC395_A0122 PF02653 Branched-chain amino acid transport system / permease component VC395_A0123 PF13407 Periplasmic binding protein domain VC395_A0124 PF00294 pfkB family carbohydrate kinase VC395_A0125 PF00356 Bacterial regulatory proteins, lacI family VC395_A0126 PF04973 Nicotinamide mononucleotide transporter VC395_A0127 PF01048 Phosphorylase superfamily VC395_A0129 PF03009 Glycerophosphoryl diester phosphodiesterase family VC395_A0130 PF07690 Major Facilitator Superfamily VC395_A0134 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A0134 PF02743 Cache domain VC395_A0134 PF00512 His Kinase A (phospho-acceptor) domain VC395_A0135 PF02954 Bacterial regulatory protein, Fis family VC395_A0135 PF00072 Response regulator receiver domain VC395_A0135 PF00158 Sigma-54 interaction domain VC395_A0140 PF01266 FAD dependent oxidoreductase VC395_A0141 PF12561 ToxR activated gene A lipoprotein domain VC395_A0141 PF00041 Fibronectin type III domain VC395_A0143 PF01327 Polypeptide deformylase VC395_A0144 PF00042 Globin VC395_A0144 PF00175 Oxidoreductase NAD-binding domain VC395_A0144 PF00970 Oxidoreductase FAD-binding domain VC395_A0145 PF03334 Na+/H+ antiporter subunit VC395_A0146 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) VC395_A0150 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VC395_A0150 PF00361 Proton-conducting membrane transporter VC395_A0150 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter VC395_A0150 PF13244 Domain of unknown function (DUF4040) VC395_A0152 PF00582 Universal stress protein family VC395_A0153 PF03222 Tryptophan/tyrosine permease family VC395_A0154 PF01212 Beta-eliminating lyase VC395_A0156 PF12843 Putative quorum-sensing-regulated virulence factor VC395_A0158 PF00563 EAL domain VC395_A0158 PF08448 PAS fold VC395_A0158 PF00990 Diguanylate cyclase, GGDEF domain VC395_A0159 PF00313 'Cold-shock' DNA-binding domain VC395_A0162 PF13519 von Willebrand factor type A domain VC395_A0162 PF07584 Aerotolerance regulator N-terminal VC395_A0165 PF01882 Protein of unknown function DUF58 VC395_A0166 PF07726 ATPase family associated with various cellular activities (AAA) VC395_A0166 PF17863 AAA lid domain VC395_A0167 PF00672 HAMP domain VC395_A0167 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A0167 PF02743 Cache domain VC395_A0170 PF01773 Na+ dependent nucleoside transporter N-terminus VC395_A0170 PF07670 Nucleoside recognition VC395_A0170 PF07662 Na+ dependent nucleoside transporter C-terminus VC395_A0171 PF01546 Peptidase family M20/M25/M40 VC395_A0171 PF07687 Peptidase dimerisation domain VC395_A0173 PF01590 GAF domain VC395_A0173 PF00158 Sigma-54 interaction domain VC395_A0174 PF00042 Globin VC395_A0174 PF00970 Oxidoreductase FAD-binding domain VC395_A0174 PF00175 Oxidoreductase NAD-binding domain VC395_A0175 PF00313 'Cold-shock' DNA-binding domain VC395_A0176 PF03889 Alternative ribosome-rescue factor A VC395_A0180 PF00072 Response regulator receiver domain VC395_A0182 PF01256 Carbohydrate kinase VC395_A0182 PF03853 YjeF-related protein N-terminus VC395_A0183 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VC395_A0183 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VC395_A0185 PF07885 Ion channel VC395_A0188 PF00478 IMP dehydrogenase / GMP reductase domain VC395_A0189 PF00589 Phage integrase family VC395_A0189 PF02899 Phage integrase, N-terminal SAM-like domain VC395_A0202 PF05840 Bacteriophage replication gene A protein (GPA) VC395_A0237 PF00145 C-5 cytosine-specific DNA methylase VC395_A0241 PF01797 Transposase IS200 like VC395_A0242 PF00271 Helicase conserved C-terminal domain VC395_A0242 PF00270 DEAD/DEAH box helicase VC395_A0243 PF03605 Anaerobic c4-dicarboxylate membrane transporter VC395_A0244 PF02540 NAD synthase VC395_A0245 PF01467 Cytidylyltransferase-like VC395_A0247 PF11849 Domain of unknown function (DUF3369) VC395_A0248 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A0248 PF00512 His Kinase A (phospho-acceptor) domain VC395_A0248 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC395_A0250 PF03553 Na+/H+ antiporter family VC395_A0251 PF07690 Major Facilitator Superfamily VC395_A0254 PF08448 PAS fold VC395_A0254 PF00990 Diguanylate cyclase, GGDEF domain VC395_A0255 PF00657 GDSL-like Lipase/Acylhydrolase VC395_A0257 PF00672 HAMP domain VC395_A0257 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A0257 PF12729 Four helix bundle sensory module for signal transduction VC395_A0258 PF00561 alpha/beta hydrolase fold VC395_A0259 PF03280 Proteobacterial lipase chaperone protein VC395_A0260 PF00801 PKD domain VC395_A0260 PF05547 Immune inhibitor A peptidase M6 VC395_A0265 PF01032 FecCD transport family VC395_A0266 PF01032 FecCD transport family VC395_A0267 PF00005 ABC transporter VC395_A0268 PF12833 Helix-turn-helix domain VC395_A0269 PF00593 TonB dependent receptor VC395_A0269 PF07715 TonB-dependent Receptor Plug Domain VC395_A0272 PF00871 Acetokinase family VC395_A0275 PF00512 His Kinase A (phospho-acceptor) domain VC395_A0275 PF00672 HAMP domain VC395_A0275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A0276 PF00486 Transcriptional regulatory protein, C terminal VC395_A0276 PF00072 Response regulator receiver domain VC395_A0278 PF01261 Xylose isomerase-like TIM barrel VC395_A0279 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VC395_A0281 PF00596 Class II Aldolase and Adducin N-terminal domain VC395_A0282 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VC395_A0283 PF03611 PTS system sugar-specific permease component VC395_A0284 PF08220 DeoR-like helix-turn-helix domain VC395_A0284 PF00455 DeoR C terminal sensor domain VC395_A0286 PF01292 Prokaryotic cytochrome b561 VC395_A0287 PF00128 Alpha amylase, catalytic domain VC395_A0290 PF00132 Bacterial transferase hexapeptide (six repeats) VC395_A0294 PF00486 Transcriptional regulatory protein, C terminal VC395_A0294 PF00072 Response regulator receiver domain VC395_A0295 PF14827 Double sensory domain of two-component sensor kinase VC395_A0295 PF13426 PAS domain VC395_A0295 PF00672 HAMP domain VC395_A0295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A0295 PF00512 His Kinase A (phospho-acceptor) domain VC395_A0304 PF07690 Major Facilitator Superfamily VC395_A0305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A0305 PF02743 Cache domain VC395_A0305 PF00672 HAMP domain VC395_A0307 PF00768 D-alanyl-D-alanine carboxypeptidase VC395_A0307 PF07943 Penicillin-binding protein 5, C-terminal domain VC395_A0311 PF00194 Eukaryotic-type carbonic anhydrase VC395_A0312 PF01797 Transposase IS200 like VC395_A0313 PF02347 Glycine cleavage system P-protein VC395_A0314 PF01597 Glycine cleavage H-protein VC395_A0315 PF00464 Serine hydroxymethyltransferase VC395_A0317 PF01571 Aminomethyltransferase folate-binding domain VC395_A0317 PF08669 Glycine cleavage T-protein C-terminal barrel domain VC395_A0319 PF01609 Transposase DDE domain VC395_A0319 PF05598 Transposase domain (DUF772) VC395_A0324 PF03129 Anticodon binding domain VC395_A0324 PF02824 TGS domain VC395_A0324 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VC395_A0324 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VC395_A0325 PF05198 Translation initiation factor IF-3, N-terminal domain VC395_A0325 PF00707 Translation initiation factor IF-3, C-terminal domain VC395_A0326 PF01632 Ribosomal protein L35 VC395_A0327 PF00453 Ribosomal protein L20 VC395_A0328 PF13495 Phage integrase, N-terminal SAM-like domain VC395_A0328 PF00589 Phage integrase family VC395_A0341 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB VC395_A0342 PF01381 Helix-turn-helix VC395_A0345 PF02567 Phenazine biosynthesis-like protein VC395_A0351 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VC395_A0364 PF04229 GrpB protein VC395_A0365 PF01810 LysE type translocator VC395_A0381 PF02016 LD-carboxypeptidase N-terminal domain VC395_A0381 PF17676 LD-carboxypeptidase C-terminal domain VC395_A0392 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VC395_A0395 PF08212 Lipocalin-like domain VC395_A0432 PF02016 LD-carboxypeptidase N-terminal domain VC395_A0432 PF17676 LD-carboxypeptidase C-terminal domain VC395_A0436 PF08212 Lipocalin-like domain VC395_A0437 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VC395_A0440 PF01555 DNA methylase VC395_A0448 PF01965 DJ-1/PfpI family VC395_A0448 PF12833 Helix-turn-helix domain VC395_A0458 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system VC395_A0459 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA VC395_A0462 PF05598 Transposase domain (DUF772) VC395_A0462 PF01609 Transposase DDE domain VC395_A0463 PF00132 Bacterial transferase hexapeptide (six repeats) VC395_A0466 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VC395_A0468 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VC395_A0499 PF07859 alpha/beta hydrolase fold VC395_A0503 PF01797 Transposase IS200 like VC395_A0515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VC395_A0516 PF01527 Transposase VC395_A0517 PF00665 Integrase core domain VC395_A0523 PF00665 Integrase core domain VC395_A0524 PF01527 Transposase VC395_A0527 PF00684 DnaJ central domain VC395_A0527 PF00226 DnaJ domain VC395_A0527 PF01556 DnaJ C terminal domain VC395_A0530 PF00498 FHA domain VC395_A0530 PF00990 Diguanylate cyclase, GGDEF domain VC395_A0530 PF00563 EAL domain VC395_A0531 PF07055 Enoyl reductase FAD binding domain VC395_A0531 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VC395_A0531 PF12241 Trans-2-enoyl-CoA reductase catalytic region VC395_A0532 PF13472 GDSL-like Lipase/Acylhydrolase family VC395_A0533 PF00005 ABC transporter VC395_A0535 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VC395_A0535 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VC395_A0537 PF02626 Carboxyltransferase domain, subdomain A and B VC395_A0539 PF03746 LamB/YcsF family VC395_A0540 PF16363 GDP-mannose 4,6 dehydratase VC395_A0541 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A0541 PF00672 HAMP domain VC395_A0541 PF12729 Four helix bundle sensory module for signal transduction VC395_A0542 PF03222 Tryptophan/tyrosine permease family VC395_A0545 PF04336 Acyl carrier protein phosphodiesterase VC395_A0546 PF00271 Helicase conserved C-terminal domain VC395_A0546 PF00270 DEAD/DEAH box helicase VC395_A0547 PF00440 Bacterial regulatory proteins, tetR family VC395_A0547 PF08361 MAATS-type transcriptional repressor, C-terminal region VC395_A0548 PF00034 Cytochrome c VC395_A0549 PF01212 Beta-eliminating lyase VC395_A0550 PF00293 NUDIX domain VC395_A0551 PF12592 Protein of unknown function (DUF3763) VC395_A0551 PF17868 AAA lid domain VC395_A0551 PF07728 AAA domain (dynein-related subfamily) VC395_A0552 PF05762 VWA domain containing CoxE-like protein VC395_A0554 PF00005 ABC transporter VC395_A0555 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC395_A0556 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A0557 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A0558 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A0558 PF03466 LysR substrate binding domain VC395_A0561 PF07690 Major Facilitator Superfamily VC395_A0562 PF00085 Thioredoxin VC395_A0563 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VC395_A0563 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VC395_A0564 PF13183 4Fe-4S dicluster domain VC395_A0564 PF02754 Cysteine-rich domain VC395_A0565 PF00890 FAD binding domain VC395_A0566 PF04324 BFD-like [2Fe-2S] binding domain VC395_A0566 PF01266 FAD dependent oxidoreductase VC395_A0568 PF00230 Major intrinsic protein VC395_A0569 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VC395_A0569 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VC395_A0572 PF04363 Protein of unknown function (DUF496) VC395_A0574 PF04337 Protein of unknown function, DUF480 VC395_A0575 PF01541 GIY-YIG catalytic domain VC395_A0577 PF13407 Periplasmic binding protein domain VC395_A0578 PF09308 LuxQ, periplasmic VC395_A0578 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A0578 PF00072 Response regulator receiver domain VC395_A0578 PF00512 His Kinase A (phospho-acceptor) domain VC395_A0585 PF07685 CobB/CobQ-like glutamine amidotransferase domain VC395_A0585 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VC395_A0587 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A0588 PF00005 ABC transporter VC395_A0588 PF03459 TOBE domain VC395_A0593 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A0593 PF08448 PAS fold VC395_A0593 PF00072 Response regulator receiver domain VC395_A0593 PF00512 His Kinase A (phospho-acceptor) domain VC395_A0593 PF13188 PAS domain VC395_A0594 PF12805 FUSC-like inner membrane protein yccS VC395_A0595 PF13361 UvrD-like helicase C-terminal domain VC395_A0595 PF00580 UvrD/REP helicase N-terminal domain VC395_A0595 PF12462 DNA helicase IV / RNA helicase N terminal VC395_A0598 PF01219 Prokaryotic diacylglycerol kinase VC395_A0600 PF00857 Isochorismatase family VC395_A0601 PF02142 MGS-like domain VC395_A0602 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VC395_A0603 PF00512 His Kinase A (phospho-acceptor) domain VC395_A0603 PF00072 Response regulator receiver domain VC395_A0603 PF01627 Hpt domain VC395_A0603 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A0603 PF00672 HAMP domain VC395_A0604 PF00224 Pyruvate kinase, barrel domain VC395_A0604 PF02887 Pyruvate kinase, alpha/beta domain VC395_A0605 PF07690 Major Facilitator Superfamily VC395_A0607 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A0607 PF00512 His Kinase A (phospho-acceptor) domain VC395_A0607 PF02743 Cache domain VC395_A0608 PF00072 Response regulator receiver domain VC395_A0608 PF02954 Bacterial regulatory protein, Fis family VC395_A0608 PF14532 Sigma-54 interaction domain VC395_A0610 PF00465 Iron-containing alcohol dehydrogenase VC395_A0612 PF06483 Chitinase C VC395_A0612 PF00704 Glycosyl hydrolases family 18 VC395_A0613 PF00483 Nucleotidyl transferase VC395_A0615 PF17158 Membrane-associated sensor, integral membrane domain VC395_A0615 PF00990 Diguanylate cyclase, GGDEF domain VC395_A0619 PF13721 SecD export protein N-terminal TM region VC395_A0619 PF02355 Protein export membrane protein VC395_A0619 PF07549 SecD/SecF GG Motif VC395_A0620 PF07549 SecD/SecF GG Motif VC395_A0620 PF02355 Protein export membrane protein VC395_A0621 PF00106 short chain dehydrogenase VC395_A0622 PF00108 Thiolase, N-terminal domain VC395_A0622 PF02803 Thiolase, C-terminal domain VC395_A0624 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VC395_A0625 PF08402 TOBE domain VC395_A0625 PF00005 ABC transporter VC395_A0626 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A0628 PF07690 Major Facilitator Superfamily VC395_A0629 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A0629 PF07730 Histidine kinase VC395_A0629 PF05231 MASE1 VC395_A0630 PF00196 Bacterial regulatory proteins, luxR family VC395_A0630 PF00072 Response regulator receiver domain VC395_A0631 PF01966 HD domain VC395_A0632 PF03264 NapC/NirT cytochrome c family, N-terminal region VC395_A0633 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VC395_A0634 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VC395_A0634 PF00384 Molybdopterin oxidoreductase VC395_A0634 PF01568 Molydopterin dinucleotide binding domain VC395_A0636 PF13187 4Fe-4S dicluster domain VC395_A0636 PF12838 4Fe-4S dicluster domain VC395_A0637 PF07730 Histidine kinase VC395_A0637 PF00672 HAMP domain VC395_A0637 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VC395_A0637 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A0638 PF00196 Bacterial regulatory proteins, luxR family VC395_A0638 PF00072 Response regulator receiver domain VC395_A0639 PF00356 Bacterial regulatory proteins, lacI family VC395_A0645 PF00474 Sodium:solute symporter family VC395_A0646 PF03315 Serine dehydratase beta chain VC395_A0646 PF03313 Serine dehydratase alpha chain VC395_A0647 PF03606 C4-dicarboxylate anaerobic carrier VC395_A0649 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A0649 PF00672 HAMP domain VC395_A0649 PF12729 Four helix bundle sensory module for signal transduction VC395_A0650 PF13419 Haloacid dehalogenase-like hydrolase VC395_A0651 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VC395_A0651 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VC395_A0653 PF00691 OmpA family VC395_A0653 PF13488 Glycine zipper VC395_A0654 PF00672 HAMP domain VC395_A0654 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A0655 PF01266 FAD dependent oxidoreductase VC395_A0655 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VC395_A0656 PF00294 pfkB family carbohydrate kinase VC395_A0657 PF08244 Glycosyl hydrolases family 32 C terminal VC395_A0657 PF00251 Glycosyl hydrolases family 32 N-terminal domain VC395_A0659 PF00367 phosphotransferase system, EIIB VC395_A0659 PF02378 Phosphotransferase system, EIIC VC395_A0668 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC395_A0668 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VC395_A0671 PF04143 Sulphur transport VC395_A0674 PF00873 AcrB/AcrD/AcrF family VC395_A0675 PF00881 Nitroreductase family VC395_A0676 PF03992 Antibiotic biosynthesis monooxygenase VC395_A0677 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A0677 PF03466 LysR substrate binding domain VC395_A0679 PF06942 GlpM protein VC395_A0682 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VC395_A0682 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VC395_A0686 PF01609 Transposase DDE domain VC395_A0686 PF05598 Transposase domain (DUF772) VC395_A0691 PF02779 Transketolase, pyrimidine binding domain VC395_A0691 PF02780 Transketolase, C-terminal domain VC395_A0691 PF00456 Transketolase, thiamine diphosphate binding domain VC395_A0692 PF00923 Transaldolase/Fructose-6-phosphate aldolase VC395_A0694 PF04198 Putative sugar-binding domain VC395_A0695 PF00581 Rhodanese-like domain VC395_A0697 PF00899 ThiF family VC395_A0698 PF03454 MoeA C-terminal region (domain IV) VC395_A0698 PF03453 MoeA N-terminal region (domain I and II) VC395_A0698 PF00994 Probable molybdopterin binding domain VC395_A0699 PF01227 GTP cyclohydrolase I VC395_A0700 PF01625 Peptide methionine sulfoxide reductase VC395_A0700 PF01641 SelR domain VC395_A0701 PF01268 Formate--tetrahydrofolate ligase VC395_A0703 PF01741 Large-conductance mechanosensitive channel, MscL VC395_A0707 PF13419 Haloacid dehalogenase-like hydrolase VC395_A0708 PF14760 Rnk N-terminus VC395_A0708 PF01272 Transcription elongation factor, GreA/GreB, C-term VC395_A0709 PF13419 Haloacid dehalogenase-like hydrolase VC395_A0711 PF00266 Aminotransferase class-V VC395_A0713 PF00005 ABC transporter VC395_A0714 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A0715 PF00392 Bacterial regulatory proteins, gntR family VC395_A0715 PF07702 UTRA domain VC395_A0718 PF00854 POT family VC395_A0723 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VC395_A0724 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A0725 PF12911 N-terminal TM domain of oligopeptide transport permease C VC395_A0725 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A0726 PF00005 ABC transporter VC395_A0726 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC395_A0727 PF00132 Bacterial transferase hexapeptide (six repeats) VC395_A0727 PF03479 Plants and Prokaryotes Conserved (PCC) domain VC395_A0727 PF12804 MobA-like NTP transferase domain VC395_A0730 PF02798 Glutathione S-transferase, N-terminal domain VC395_A0730 PF00043 Glutathione S-transferase, C-terminal domain VC395_A0734 PF03061 Thioesterase superfamily VC395_A0736 PF12793 Sugar transport-related sRNA regulator N-term VC395_A0736 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VC395_A0739 PF07715 TonB-dependent Receptor Plug Domain VC395_A0739 PF00593 TonB dependent receptor VC395_A0740 PF03466 LysR substrate binding domain VC395_A0740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A0741 PF13607 Succinyl-CoA ligase like flavodoxin domain VC395_A0741 PF00583 Acetyltransferase (GNAT) family VC395_A0741 PF13380 CoA binding domain VC395_A0743 PF01820 D-ala D-ala ligase N-terminus VC395_A0743 PF07478 D-ala D-ala ligase C-terminus VC395_A0745 PF01253 Translation initiation factor SUI1 VC395_A0746 PF01376 Heat-labile enterotoxin beta chain VC395_A0747 PF01375 Heat-labile enterotoxin alpha chain VC395_A0748 PF05707 Zonular occludens toxin (Zot) VC395_A0749 PF10734 Protein of unknown function (DUF2523) VC395_A0750 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII VC395_A0754 PF01381 Helix-turn-helix VC395_A0756 PF03701 Uncharacterised protein family (UPF0181) VC395_A0759 PF00072 Response regulator receiver domain VC395_A0759 PF00486 Transcriptional regulatory protein, C terminal VC395_A0761 PF02233 NAD(P) transhydrogenase beta subunit VC395_A0762 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VC395_A0762 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VC395_A0762 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VC395_A0765 PF17158 Membrane-associated sensor, integral membrane domain VC395_A0765 PF00990 Diguanylate cyclase, GGDEF domain VC395_A0768 PF00990 Diguanylate cyclase, GGDEF domain VC395_A0768 PF17151 Periplasmic sensor domain VC395_A0775 PF03831 PhnA domain VC395_A0775 PF08274 PhnA Zinc-Ribbon VC395_A0778 PF03741 Integral membrane protein TerC family VC395_A0779 PF00149 Calcineurin-like phosphoesterase VC395_A0779 PF02872 5'-nucleotidase, C-terminal domain VC395_A0780 PF11398 Protein of unknown function (DUF2813) VC395_A0781 PF06496 Protein of unknown function (DUF1097) VC395_A0782 PF03466 LysR substrate binding domain VC395_A0782 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A0784 PF01226 Formate/nitrite transporter VC395_A0785 PF04264 YceI-like domain VC395_A0786 PF01292 Prokaryotic cytochrome b561 VC395_A0788 PF10388 EAL-domain associated signalling protein domain VC395_A0788 PF00563 EAL domain VC395_A0790 PF09335 SNARE associated Golgi protein VC395_A0791 PF02416 mttA/Hcf106 family VC395_A0792 PF00072 Response regulator receiver domain VC395_A0792 PF00486 Transcriptional regulatory protein, C terminal VC395_A0793 PF13493 Domain of unknown function (DUF4118) VC395_A0793 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A0793 PF00512 His Kinase A (phospho-acceptor) domain VC395_A0793 PF02702 Osmosensitive K+ channel His kinase sensor domain VC395_A0794 PF10371 Domain of unknown function VC395_A0794 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VC395_A0794 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II VC395_A0794 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg VC395_A0794 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase VC395_A0795 PF02705 K+ potassium transporter VC395_A0796 PF01926 50S ribosome-binding GTPase VC395_A0797 PF02492 CobW/HypB/UreG, nucleotide-binding domain VC395_A0797 PF07683 Cobalamin synthesis protein cobW C-terminal domain VC395_A0798 PF00654 Voltage gated chloride channel VC395_A0801 PF00155 Aminotransferase class I and II VC395_A0802 PF00072 Response regulator receiver domain VC395_A0802 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A0803 PF13476 AAA domain VC395_A0804 PF00149 Calcineurin-like phosphoesterase VC395_A0804 PF12320 Type 5 capsule protein repressor C-terminal domain VC395_A0805 PF00356 Bacterial regulatory proteins, lacI family VC395_A0805 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VC395_A0806 PF00381 PTS HPr component phosphorylation site VC395_A0806 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VC395_A0807 PF00294 pfkB family carbohydrate kinase VC395_A0808 PF02378 Phosphotransferase system, EIIC VC395_A0808 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VC395_A0809 PF18030 RimK PreATP-grasp domain VC395_A0809 PF08443 RimK-like ATP-grasp domain VC395_A0810 PF00155 Aminotransferase class I and II VC395_A0812 PF13597 Anaerobic ribonucleoside-triphosphate reductase VC395_A0812 PF03477 ATP cone domain VC395_A0815 PF00665 Integrase core domain VC395_A0816 PF01527 Transposase VC395_A0819 PF00239 Resolvase, N terminal domain VC395_A0819 PF02796 Helix-turn-helix domain of resolvase VC395_A0822 PF13419 Haloacid dehalogenase-like hydrolase VC395_A0825 PF00294 pfkB family carbohydrate kinase VC395_A0826 PF00884 Sulfatase VC395_A0828 PF00271 Helicase conserved C-terminal domain VC395_A0828 PF00270 DEAD/DEAH box helicase VC395_A0828 PF03880 DbpA RNA binding domain VC395_A0829 PF08206 Ribonuclease B OB domain VC395_A0829 PF00575 S1 RNA binding domain VC395_A0829 PF00773 RNB domain VC395_A0831 PF12849 PBP superfamily domain VC395_A0832 PF01575 MaoC like domain VC395_A0833 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VC395_A0835 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VC395_A0835 PF18416 N-acetylglucosamine binding protein domain 2 VC395_A0836 PF07504 Fungalysin/Thermolysin Propeptide Motif VC395_A0836 PF02868 Thermolysin metallopeptidase, alpha-helical domain VC395_A0836 PF04151 Bacterial pre-peptidase C-terminal domain VC395_A0836 PF01447 Thermolysin metallopeptidase, catalytic domain VC395_A0836 PF03413 Peptidase propeptide and YPEB domain VC395_A0837 PF04151 Bacterial pre-peptidase C-terminal domain VC395_A0837 PF04389 Peptidase family M28 VC395_A0838 PF00491 Arginase family VC395_A0839 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VC395_A0839 PF17944 Arginine decarboxylase C-terminal helical extension VC395_A0839 PF17810 Arginine decarboxylase helical bundle domain VC395_A0842 PF01769 Divalent cation transporter VC395_A0842 PF03448 MgtE intracellular N domain VC395_A0842 PF00571 CBS domain VC395_A0843 PF00166 Chaperonin 10 Kd subunit VC395_A0844 PF00118 TCP-1/cpn60 chaperonin family VC395_A0846 PF13840 ACT domain VC395_A0846 PF00696 Amino acid kinase family VC395_A0847 PF06339 Ectoine synthase VC395_A0848 PF00202 Aminotransferase class-III VC395_A0849 PF00583 Acetyltransferase (GNAT) family VC395_A0851 PF01329 Pterin 4 alpha carbinolamine dehydratase VC395_A0852 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VC395_A0853 PF13193 AMP-binding enzyme C-terminal domain VC395_A0853 PF00501 AMP-binding enzyme VC395_A0857 PF03466 LysR substrate binding domain VC395_A0857 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A0859 PF00892 EamA-like transporter family VC395_A0860 PF00132 Bacterial transferase hexapeptide (six repeats) VC395_A0860 PF14602 Hexapeptide repeat of succinyl-transferase VC395_A0860 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VC395_A0861 PF01595 Cyclin M transmembrane N-terminal domain VC395_A0861 PF03471 Transporter associated domain VC395_A0861 PF00571 CBS domain VC395_A0862 PF02566 OsmC-like protein VC395_A0864 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VC395_A0867 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VC395_A0867 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC395_A0871 PF13520 Amino acid permease VC395_A0874 PF04397 LytTr DNA-binding domain VC395_A0874 PF00072 Response regulator receiver domain VC395_A0875 PF07694 5TMR of 5TMR-LYT VC395_A0875 PF13492 GAF domain VC395_A0875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A0875 PF06580 Histidine kinase VC395_A0878 PF00005 ABC transporter VC395_A0878 PF12704 MacB-like periplasmic core domain VC395_A0878 PF02687 FtsX-like permease family VC395_A0879 PF00005 ABC transporter VC395_A0883 PF00248 Aldo/keto reductase family VC395_A0884 PF00128 Alpha amylase, catalytic domain VC395_A0886 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VC395_A0887 PF12262 Bacterial virulence factor lipase N-terminal VC395_A0888 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A0888 PF08447 PAS fold VC395_A0888 PF13426 PAS domain VC395_A0889 PF02868 Thermolysin metallopeptidase, alpha-helical domain VC395_A0889 PF01447 Thermolysin metallopeptidase, catalytic domain VC395_A0889 PF07504 Fungalysin/Thermolysin Propeptide Motif VC395_A0889 PF04151 Bacterial pre-peptidase C-terminal domain VC395_A0889 PF03413 Peptidase propeptide and YPEB domain VC395_A0891 PF03922 OmpW family VC395_A0894 PF00768 D-alanyl-D-alanine carboxypeptidase VC395_A0895 PF00155 Aminotransferase class I and II VC395_A0895 PF00392 Bacterial regulatory proteins, gntR family VC395_A0896 PF01654 Cytochrome bd terminal oxidase subunit I VC395_A0897 PF02322 Cytochrome bd terminal oxidase subunit II VC395_A0899 PF00291 Pyridoxal-phosphate dependent enzyme VC395_A0900 PF03466 LysR substrate binding domain VC395_A0900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A0910 PF00107 Zinc-binding dehydrogenase VC395_A0910 PF08240 Alcohol dehydrogenase GroES-like domain VC395_A0911 PF00155 Aminotransferase class I and II VC395_A0914 PF03466 LysR substrate binding domain VC395_A0914 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A0915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VC395_A0921 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VC395_A0921 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VC395_A0922 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VC395_A0923 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VC395_A0923 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VC395_A0928 PF02595 Glycerate kinase family VC395_A0929 PF02447 GntP family permease VC395_A0930 PF17853 GGDEF-like domain VC395_A0930 PF13556 PucR C-terminal helix-turn-helix domain VC395_A0930 PF05651 Putative sugar diacid recognition VC395_A0931 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A0931 PF00672 HAMP domain VC395_A0932 PF01243 Pyridoxamine 5'-phosphate oxidase VC395_A0933 PF06228 Haem utilisation ChuX/HutX VC395_A0934 PF04055 Radical SAM superfamily VC395_A0935 PF03544 Gram-negative bacterial TonB protein C-terminal VC395_A0936 PF01618 MotA/TolQ/ExbB proton channel family VC395_A0937 PF02472 Biopolymer transport protein ExbD/TolR VC395_A0938 PF01497 Periplasmic binding protein VC395_A0939 PF01032 FecCD transport family VC395_A0940 PF00005 ABC transporter VC395_A0948 PF02743 Cache domain VC395_A0948 PF00672 HAMP domain VC395_A0948 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A0949 PF03473 MOSC domain VC395_A0949 PF00111 2Fe-2S iron-sulfur cluster binding domain VC395_A0949 PF03476 MOSC N-terminal beta barrel domain VC395_A0949 PF03473 MOSC domain VC395_A0949 PF00111 2Fe-2S iron-sulfur cluster binding domain VC395_A0949 PF03476 MOSC N-terminal beta barrel domain VC395_A0950 PF01979 Amidohydrolase family VC395_A0952 PF05656 Protein of unknown function (DUF805) VC395_A0954 PF05958 tRNA (Uracil-5-)-methyltransferase VC395_A0955 PF05661 Protein of unknown function (DUF808) VC395_A0958 PF00313 'Cold-shock' DNA-binding domain VC395_A0964 PF00990 Diguanylate cyclase, GGDEF domain VC395_A0964 PF08448 PAS fold VC395_A0965 PF08220 DeoR-like helix-turn-helix domain VC395_A0965 PF00455 DeoR C terminal sensor domain VC395_A0968 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A0969 PF14785 Maltose transport system permease protein MalF P2 domain VC395_A0969 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A0970 PF01547 Bacterial extracellular solute-binding protein VC395_A0971 PF08402 TOBE domain VC395_A0971 PF00005 ABC transporter VC395_A0972 PF13302 Acetyltransferase (GNAT) domain VC395_A0976 PF01906 Putative heavy-metal-binding VC395_A0977 PF00196 Bacterial regulatory proteins, luxR family VC395_A0979 PF01584 CheW-like domain VC395_A0979 PF00072 Response regulator receiver domain VC395_A0980 PF01047 MarR family VC395_A0981 PF00990 Diguanylate cyclase, GGDEF domain VC395_A0985 PF03707 Bacterial signalling protein N terminal repeat VC395_A0985 PF00563 EAL domain VC395_A0985 PF00990 Diguanylate cyclase, GGDEF domain VC395_A0989 PF03466 LysR substrate binding domain VC395_A0989 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A0990 PF00990 Diguanylate cyclase, GGDEF domain VC395_A0990 PF00563 EAL domain VC395_A0994 PF02678 Pirin VC395_A0994 PF05726 Pirin C-terminal cupin domain VC395_A0995 PF06865 Pyrimidine/purine nucleoside phosphorylase VC395_A0997 PF07690 Major Facilitator Superfamily VC395_A0999 PF17200 Single Cache domain 2 VC395_A0999 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A0999 PF00672 HAMP domain VC395_A1000 PF13654 AAA domain VC395_A1000 PF05362 Lon protease (S16) C-terminal proteolytic domain VC395_A1002 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC395_A1002 PF00005 ABC transporter VC395_A1003 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC395_A1004 PF00672 HAMP domain VC395_A1004 PF17200 Single Cache domain 2 VC395_A1004 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A1006 PF03466 LysR substrate binding domain VC395_A1006 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A1007 PF02652 L-lactate permease VC395_A1008 PF01070 FMN-dependent dehydrogenase VC395_A1010 PF03618 Kinase/pyrophosphorylase VC395_A1011 PF02896 PEP-utilising enzyme, TIM barrel domain VC395_A1011 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VC395_A1011 PF00391 PEP-utilising enzyme, mobile domain VC395_A1012 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A1012 PF08447 PAS fold VC395_A1013 PF01554 MatE VC395_A1014 PF00270 DEAD/DEAH box helicase VC395_A1014 PF00271 Helicase conserved C-terminal domain VC395_A1015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A1015 PF03466 LysR substrate binding domain VC395_A1017 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VC395_A1020 PF00005 ABC transporter VC395_A1020 PF00664 ABC transporter transmembrane region VC395_A1022 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VC395_A1024 PF01810 LysE type translocator VC395_A1025 PF12833 Helix-turn-helix domain VC395_A1028 PF01557 Fumarylacetoacetate (FAA) hydrolase family VC395_A1029 PF01047 MarR family VC395_A1030 PF02566 OsmC-like protein VC395_A1032 PF13609 Gram-negative porin VC395_A1034 PF00892 EamA-like transporter family VC395_A1035 PF00462 Glutaredoxin VC395_A1036 PF07670 Nucleoside recognition VC395_A1037 PF07670 Nucleoside recognition VC395_A1039 PF03600 Citrate transporter VC395_A1041 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VC395_A1041 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VC395_A1042 PF00730 HhH-GPD superfamily base excision DNA repair protein VC395_A1042 PF06029 AlkA N-terminal domain VC395_A1043 PF07681 DoxX VC395_A1044 PF03466 LysR substrate binding domain VC395_A1044 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A1048 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VC395_A1050 PF07148 Maltose operon periplasmic protein precursor (MalM) VC395_A1051 PF02264 LamB porin VC395_A1052 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VC395_A1052 PF00128 Alpha amylase, catalytic domain VC395_A1054 PF12729 Four helix bundle sensory module for signal transduction VC395_A1054 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A1054 PF00672 HAMP domain VC395_A1057 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A1057 PF00672 HAMP domain VC395_A1059 PF00793 DAHP synthetase I family VC395_A1060 PF00005 ABC transporter VC395_A1061 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A1062 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC395_A1063 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A1064 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VC395_A1064 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VC395_A1064 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VC395_A1064 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VC395_A1066 PF01551 Peptidase family M23 VC395_A1066 PF04225 Opacity-associated protein A LysM-like domain VC395_A1068 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VC395_A1068 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VC395_A1068 PF02378 Phosphotransferase system, EIIC VC395_A1069 PF08125 Mannitol dehydrogenase C-terminal domain VC395_A1069 PF01232 Mannitol dehydrogenase Rossmann domain VC395_A1070 PF05068 Mannitol repressor VC395_A1071 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VC395_A1077 PF13460 NAD(P)H-binding VC395_A1078 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A1078 PF03466 LysR substrate binding domain VC395_A1079 PF02743 Cache domain VC395_A1079 PF00672 HAMP domain VC395_A1079 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A1080 PF00106 short chain dehydrogenase VC395_A1081 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC395_A1081 PF03466 LysR substrate binding domain VC395_A1082 PF04013 Putative SAM-dependent RNA methyltransferase VC395_A1083 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VC395_A1084 PF13520 Amino acid permease VC395_A1085 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VC395_A1085 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VC395_A1085 PF01276 Orn/Lys/Arg decarboxylase, major domain VC395_A1089 PF00171 Aldehyde dehydrogenase family VC395_A1090 PF01037 Lrp/AsnC ligand binding domain VC395_A1091 PF00672 HAMP domain VC395_A1091 PF02743 Cache domain VC395_A1091 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A1093 PF00474 Sodium:solute symporter family VC395_A1095 PF00171 Aldehyde dehydrogenase family VC395_A1095 PF01619 Proline dehydrogenase VC395_A1095 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VC395_A1095 PF14850 DNA-binding domain of Proline dehydrogenase VC395_A1096 PF12833 Helix-turn-helix domain VC395_A1099 PF03781 Sulfatase-modifying factor enzyme 1 VC395_A1100 PF00072 Response regulator receiver domain VC395_A1100 PF00196 Bacterial regulatory proteins, luxR family VC395_A1101 PF01243 Pyridoxamine 5'-phosphate oxidase VC395_A1101 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VC395_A1102 PF00529 HlyD membrane-fusion protein of T1SS VC395_A1105 PF00005 ABC transporter VC395_A1105 PF00664 ABC transporter transmembrane region VC395_A1105 PF03412 Peptidase C39 family VC395_A1107 PF00072 Response regulator receiver domain VC395_A1107 PF00486 Transcriptional regulatory protein, C terminal VC395_A1109 PF02743 Cache domain VC395_A1109 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A1109 PF00672 HAMP domain VC395_A1110 PF00072 Response regulator receiver domain VC395_A1110 PF01339 CheB methylesterase VC395_A1111 PF03975 CheD chemotactic sensory transduction VC395_A1112 PF03705 CheR methyltransferase, all-alpha domain VC395_A1112 PF01739 CheR methyltransferase, SAM binding domain VC395_A1113 PF00672 HAMP domain VC395_A1113 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC395_A1113 PF02203 Tar ligand binding domain homologue VC395_A1114 PF01584 CheW-like domain VC395_A1115 PF01584 CheW-like domain VC395_A1116 PF01627 Hpt domain VC395_A1116 PF02895 Signal transducing histidine kinase, homodimeric domain VC395_A1116 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A1116 PF01584 CheW-like domain VC395_A1116 PF09078 CheY binding VC395_A1117 PF00072 Response regulator receiver domain VC395_A1120 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A1121 PF12911 N-terminal TM domain of oligopeptide transport permease C VC395_A1121 PF00528 Binding-protein-dependent transport system inner membrane component VC395_A1122 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC395_A1122 PF00005 ABC transporter VC395_A1125 PF08521 Two-component sensor kinase N-terminal VC395_A1125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC395_A1125 PF00512 His Kinase A (phospho-acceptor) domain VC395_A1126 PF00486 Transcriptional regulatory protein, C terminal VC395_A1126 PF00072 Response regulator receiver domain VC395_A1130 PF00501 AMP-binding enzyme VC395_A1132 PF13718 GNAT acetyltransferase 2 VC395_A1132 PF05127 Helicase VC395_A1133 PF13416 Bacterial extracellular solute-binding protein VC395_A1134 PF08775 ParB family VC395_A1134 PF02195 ParB-like nuclease domain VC395_A1135 PF13614 AAA domain VC395_A1135 PF18607 ParA helix turn helix domain