VC395_0002 SM00360 RNA recognition motif VC395_0008 SM00530 Helix-turn-helix XRE-family like proteins VC395_0021 SM00857 Resolvase, N terminal domain VC395_0032 SM00382 ATPases associated with a variety of cellular activities VC395_0033 SM00382 ATPases associated with a variety of cellular activities VC395_0033 SM00962 SRP54-type protein, GTPase domain VC395_0033 SM00963 SRP54-type protein, helical bundle domain VC395_0043 SM00052 Putative diguanylate phosphodiesterase VC395_0049 SM01144 VC395_0049 VC395_0050 SM00052 Putative diguanylate phosphodiesterase VC395_0050 SM00267 diguanylate cyclase VC395_0050 SM00897 FIST N domain VC395_0050 SM01204 VC395_0050 VC395_0057 SM01219 VC395_0057 VC395_0064 SM00729 Elongator protein 3, MiaB family, Radical SAM VC395_0072 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VC395_0072 SM00474 3'-5' exonuclease VC395_0072 SM00475 5'-3' exonuclease VC395_0072 SM00482 DNA polymerase A domain VC395_0075 SM01004 Delta-aminolevulinic acid dehydratase VC395_0080 SM00450 Rhodanese Homology Domain VC395_0082 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VC395_0082 SM00091 PAS domain VC395_0082 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_0087 SM00563 Phosphate acyltransferases VC395_0108 SM00052 Putative diguanylate phosphodiesterase VC395_0108 SM00091 PAS domain VC395_0108 SM00267 diguanylate cyclase VC395_0109 SM00344 helix_turn_helix ASNC type VC395_0114 SM00876 Biotin and Thiamin Synthesis associated domain VC395_0128 SM01001 AIR carboxylase VC395_0133 SM00257 Lysin motif VC395_0147 SM00563 Phosphate acyltransferases VC395_0148 SM00382 ATPases associated with a variety of cellular activities VC395_0154 SM00829 Enoylreductase VC395_0165 SM00387 Histidine kinase-like ATPases VC395_0165 SM00433 TopoisomeraseII VC395_0167 SM00480 DNA polymerase III beta subunit VC395_0168 SM00382 ATPases associated with a variety of cellular activities VC395_0168 SM00760 Bacterial dnaA protein helix-turn-helix domain VC395_0170 SM00062 Bacterial periplasmic substrate-binding proteins VC395_0172 SM00382 ATPases associated with a variety of cellular activities VC395_0175 SM01234 VC395_0175 VC395_0180 SM01228 VC395_0180 VC395_0183 SM00470 ParB-like nuclease domain VC395_0191 SM00382 ATPases associated with a variety of cellular activities VC395_0213 SM00382 ATPases associated with a variety of cellular activities VC395_0224 SM00342 helix_turn_helix, arabinose operon control protein VC395_0228 SM00341 Helicase and RNase D C-terminal VC395_0228 SM00487 DEAD-like helicases superfamily VC395_0228 SM00490 helicase superfamily c-terminal domain VC395_0228 SM00956 VC395_0228 VC395_0231 SM00382 ATPases associated with a variety of cellular activities VC395_0233 SM00382 ATPases associated with a variety of cellular activities VC395_0248 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_0248 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_0248 SM01049 VC395_0248 VC395_0253 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VC395_0253 SM01232 VC395_0253 VC395_0279 SM00382 ATPases associated with a variety of cellular activities VC395_0293 SM00849 Metallo-beta-lactamase superfamily VC395_0293 SM01027 Beta-Casp domain VC395_0295 SM00986 Uracil DNA glycosylase superfamily VC395_0295 SM00987 UreE urease accessory protein, C-terminal domain VC395_0302 SM00411 bacterial (prokaryotic) histone like domain VC395_0304 SM01209 VC395_0304 VC395_0304 SM01210 VC395_0304 VC395_0305 SM00798 AICARFT/IMPCHase bienzyme VC395_0305 SM00851 MGS-like domain VC395_0306 SM00422 helix_turn_helix, mercury resistance VC395_0307 SM00862 Transcriptional regulatory protein, C terminal VC395_0311 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_0311 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_0311 SM01049 VC395_0311 VC395_0318 SM00354 helix_turn _helix lactose operon repressor VC395_0321 SM00487 DEAD-like helicases superfamily VC395_0321 SM00490 helicase superfamily c-terminal domain VC395_0324 SM01101 VC395_0324 VC395_0339 SM00878 Biotin carboxylase C-terminal domain VC395_0343 SM00479 VC395_0343 VC395_0347 SM00387 Histidine kinase-like ATPases VC395_0347 SM00388 His Kinase A (phosphoacceptor) domain VC395_0347 SM00448 cheY-homologous receiver domain VC395_0349 SM00487 DEAD-like helicases superfamily VC395_0349 SM00490 helicase superfamily c-terminal domain VC395_0351 SM00357 Cold shock protein domain VC395_0351 SM00382 ATPases associated with a variety of cellular activities VC395_0351 SM00959 Rho termination factor, N-terminal domain VC395_0358 SM00155 Phospholipase D. Active site motifs. VC395_0366 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VC395_0366 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VC395_0367 SM00649 Ribosomal protein L11/L12 VC395_0372 SM00663 RNA polymerase I subunit A N-terminus VC395_0384 SM00479 VC395_0384 VC395_0387 SM00257 Lysin motif VC395_0387 SM00646 VC395_0387 VC395_0388 SM00853 MutL C terminal dimerisation domain VC395_0388 SM01340 VC395_0388 VC395_0392 SM00244 prohibitin homologues VC395_0393 SM00244 prohibitin homologues VC395_0396 SM00320 WD40 repeats VC395_0404 SM00838 Elongation factor G C-terminus VC395_0404 SM00889 Elongation factor G, domain IV VC395_0414 SM00382 ATPases associated with a variety of cellular activities VC395_0415 SM01005 Alanine racemase, C-terminal domain VC395_0434 SM01018 B12 binding domain VC395_0440 SM00421 helix_turn_helix, Lux Regulon VC395_0442 SM00052 Putative diguanylate phosphodiesterase VC395_0442 SM00267 diguanylate cyclase VC395_0446 SM00965 Secretin and TonB N terminus short domain VC395_0448 SM00028 Tetratricopeptide repeats VC395_0449 SM00382 ATPases associated with a variety of cellular activities VC395_0463 SM00316 Ribosomal protein S1-like RNA-binding domain VC395_0487 SM00650 Ribosomal RNA adenine dimethylases VC395_0491 SM00271 DnaJ molecular chaperone homology domain VC395_0493 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_0493 SM01049 VC395_0493 VC395_0496 SM00478 endonuclease III VC395_0496 SM00525 VC395_0496 VC395_0499 SM00729 Elongator protein 3, MiaB family, Radical SAM VC395_0502 SM01152 VC395_0502 VC395_0506 SM00382 ATPases associated with a variety of cellular activities VC395_0508 SM00421 helix_turn_helix, Lux Regulon VC395_0509 SM00363 S4 RNA-binding domain VC395_0510 SM00732 Likely ribonuclease with RNase H fold. VC395_0515 SM00731 SprT homologues. VC395_0517 SM00861 Transketolase, pyrimidine binding domain VC395_0520 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC395_0530 SM00420 helix_turn_helix, Deoxyribose operon repressor VC395_0530 SM01134 VC395_0530 VC395_0533 SM00563 Phosphate acyltransferases VC395_0535 SM00400 zinc finger VC395_0535 SM00493 VC395_0535 VC395_0535 SM00766 DNA primase DnaG DnaB-binding VC395_0540 SM01207 VC395_0540 VC395_0541 SM00905 Dihydroneopterin aldolase VC395_0550 SM00257 Lysin motif VC395_0552 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VC395_0552 SM00534 ATPase domain of DNA mismatch repair MUTS family VC395_0558 SM00382 ATPases associated with a variety of cellular activities VC395_0560 SM00382 ATPases associated with a variety of cellular activities VC395_0562 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VC395_0569 SM00829 Enoylreductase VC395_0575 SM01091 Transporter associated domain VC395_0577 SM00382 ATPases associated with a variety of cellular activities VC395_0577 SM00962 SRP54-type protein, GTPase domain VC395_0577 SM00963 SRP54-type protein, helical bundle domain VC395_0582 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VC395_0583 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VC395_0595 SM00749 bacterial OsmY and nodulation domain VC395_0603 SM00947 Carbonic anhydrase VC395_0606 SM00382 ATPases associated with a variety of cellular activities VC395_0618 SM00487 DEAD-like helicases superfamily VC395_0618 SM00490 helicase superfamily c-terminal domain VC395_0618 SM00847 Helicase associated domain (HA2) Add an annotation VC395_0623 SM00938 Nitrogen regulatory protein P-II VC395_0627 SM00382 ATPases associated with a variety of cellular activities VC395_0629 SM01068 Putative carbohydrate binding domain VC395_0633 SM00382 ATPases associated with a variety of cellular activities VC395_0634 SM00382 ATPases associated with a variety of cellular activities VC395_0639 SM00091 PAS domain VC395_0639 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_0639 SM00387 Histidine kinase-like ATPases VC395_0639 SM00388 His Kinase A (phosphoacceptor) domain VC395_0639 SM00448 cheY-homologous receiver domain VC395_0648 SM00363 S4 RNA-binding domain VC395_0652 SM01103 VC395_0652 VC395_0654 SM00382 ATPases associated with a variety of cellular activities VC395_0659 SM00316 Ribosomal protein S1-like RNA-binding domain VC395_0659 SM00322 K homology RNA-binding domain VC395_0663 SM01387 VC395_0663 VC395_0664 SM00316 Ribosomal protein S1-like RNA-binding domain VC395_0664 SM00322 K homology RNA-binding domain VC395_0665 SM00028 Tetratricopeptide repeats VC395_0666 SM00347 helix_turn_helix multiple antibiotic resistance protein VC395_0670 SM00052 Putative diguanylate phosphodiesterase VC395_0670 SM00091 PAS domain VC395_0670 SM00267 diguanylate cyclase VC395_0675 SM00052 Putative diguanylate phosphodiesterase VC395_0675 SM00267 diguanylate cyclase VC395_0677 SM00487 DEAD-like helicases superfamily VC395_0677 SM00490 helicase superfamily c-terminal domain VC395_0680 SM00937 VC395_0680 VC395_0682 SM00382 ATPases associated with a variety of cellular activities VC395_0685 SM00927 DNA mismatch repair enzyme MutH VC395_0689 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VC395_0695 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VC395_0698 SM00904 Riboflavin kinase VC395_0710 SM00448 cheY-homologous receiver domain VC395_0710 SM00850 LytTr DNA-binding domain VC395_0713 SM00830 Chorismate mutase type II VC395_0715 SM00382 ATPases associated with a variety of cellular activities VC395_0720 SM00052 Putative diguanylate phosphodiesterase VC395_0720 SM00267 diguanylate cyclase VC395_0722 SM00830 Chorismate mutase type II VC395_0726 SM00363 S4 RNA-binding domain VC395_0728 SM00382 ATPases associated with a variety of cellular activities VC395_0728 SM01086 C-terminal, D2-small domain, of ClpB protein VC395_0736 SM00448 cheY-homologous receiver domain VC395_0736 SM00862 Transcriptional regulatory protein, C terminal VC395_0737 SM00091 PAS domain VC395_0737 SM00387 Histidine kinase-like ATPases VC395_0737 SM00388 His Kinase A (phosphoacceptor) domain VC395_0743 SM00382 ATPases associated with a variety of cellular activities VC395_0754 SM00116 Domain in cystathionine beta-synthase and other proteins. VC395_0759 SM01323 VC395_0759 VC395_0768 SM00271 DnaJ molecular chaperone homology domain VC395_0773 SM00562 VC395_0773 VC395_0775 SM00530 Helix-turn-helix XRE-family like proteins VC395_0779 SM00564 beta-propeller repeat VC395_0780 SM00382 ATPases associated with a variety of cellular activities VC395_0784 SM00116 Domain in cystathionine beta-synthase and other proteins. VC395_0784 SM01240 VC395_0784 VC395_0786 SM00495 Chitin-binding domain type 3 VC395_0796 SM00382 ATPases associated with a variety of cellular activities VC395_0800 SM00849 Metallo-beta-lactamase superfamily VC395_0807 SM00448 cheY-homologous receiver domain VC395_0808 SM00091 PAS domain VC395_0808 SM00387 Histidine kinase-like ATPases VC395_0813 SM00764 Citrate lyase ligase C-terminal domain VC395_0829 SM00487 DEAD-like helicases superfamily VC395_0829 SM00490 helicase superfamily c-terminal domain VC395_0831 SM00530 Helix-turn-helix XRE-family like proteins VC395_0837 SM00060 Fibronectin type 3 domain VC395_0841 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_0842 SM00862 Transcriptional regulatory protein, C terminal VC395_0854 SM00342 helix_turn_helix, arabinose operon control protein VC395_0856 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_0856 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_0861 SM01276 VC395_0861 VC395_0872 SM00271 DnaJ molecular chaperone homology domain VC395_0882 SM00062 Bacterial periplasmic substrate-binding proteins VC395_0885 SM01211 VC395_0885 VC395_0886 SM01321 VC395_0886 VC395_0905 SM00861 Transketolase, pyrimidine binding domain VC395_0910 SM00981 VC395_0910 VC395_0914 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VC395_0914 SM00475 5'-3' exonuclease VC395_0916 SM00267 diguanylate cyclase VC395_0917 SM00028 Tetratricopeptide repeats VC395_0923 SM00382 ATPases associated with a variety of cellular activities VC395_0923 SM00930 VC395_0923 VC395_0925 SM00354 helix_turn _helix lactose operon repressor VC395_0927 SM00642 Alpha-amylase domain VC395_0932 SM00226 Low molecular weight phosphatase family VC395_0934 SM00984 UDP binding domain VC395_0945 SM00710 Parallel beta-helix repeats VC395_0958 SM00729 Elongator protein 3, MiaB family, Radical SAM VC395_0962 SM00936 Penicillin-binding protein 5, C-terminal domain VC395_0974 SM00116 Domain in cystathionine beta-synthase and other proteins. VC395_0974 SM01091 Transporter associated domain VC395_0977 SM00729 Elongator protein 3, MiaB family, Radical SAM VC395_0985 SM00771 ZipA, C-terminal domain (FtsZ-binding) VC395_0986 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VC395_0986 SM00292 breast cancer carboxy-terminal domain VC395_0986 SM00532 Ligase N family VC395_0989 SM00422 helix_turn_helix, mercury resistance VC395_0991 SM00244 prohibitin homologues VC395_0999 SM00862 Transcriptional regulatory protein, C terminal VC395_1000 SM00387 Histidine kinase-like ATPases VC395_1005 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VC395_1005 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VC395_1021 SM00479 VC395_1021 VC395_1026 SM00478 endonuclease III VC395_1026 SM00525 VC395_1026 VC395_1028 SM00900 VC395_1028 VC395_1033 SM00487 DEAD-like helicases superfamily VC395_1033 SM00490 helicase superfamily c-terminal domain VC395_1035 SM00382 ATPases associated with a variety of cellular activities VC395_1035 SM00448 cheY-homologous receiver domain VC395_1038 SM00729 Elongator protein 3, MiaB family, Radical SAM VC395_1039 SM00852 Probable molybdopterin binding domain VC395_1043 SM00267 diguanylate cyclase VC395_1045 SM00116 Domain in cystathionine beta-synthase and other proteins. VC395_1055 SM00226 Low molecular weight phosphatase family VC395_1064 SM00448 cheY-homologous receiver domain VC395_1068 SM00382 ATPases associated with a variety of cellular activities VC395_1070 SM00493 VC395_1070 VC395_1076 SM00344 helix_turn_helix ASNC type VC395_1081 SM00062 Bacterial periplasmic substrate-binding proteins VC395_1081 SM00267 diguanylate cyclase VC395_1083 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VC395_1084 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC395_1091 SM00342 helix_turn_helix, arabinose operon control protein VC395_1096 SM00448 cheY-homologous receiver domain VC395_1097 SM00448 cheY-homologous receiver domain VC395_1099 SM00387 Histidine kinase-like ATPases VC395_1099 SM00388 His Kinase A (phosphoacceptor) domain VC395_1100 SM00387 Histidine kinase-like ATPases VC395_1101 SM00052 Putative diguanylate phosphodiesterase VC395_1101 SM00448 cheY-homologous receiver domain VC395_1102 SM00448 cheY-homologous receiver domain VC395_1103 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_1103 SM00387 Histidine kinase-like ATPases VC395_1109 SM00382 ATPases associated with a variety of cellular activities VC395_1110 SM00382 ATPases associated with a variety of cellular activities VC395_1118 SM00382 ATPases associated with a variety of cellular activities VC395_1119 SM00267 diguanylate cyclase VC395_1123 SM00382 ATPases associated with a variety of cellular activities VC395_1127 SM00729 Elongator protein 3, MiaB family, Radical SAM VC395_1127 SM00876 Biotin and Thiamin Synthesis associated domain VC395_1145 SM00530 Helix-turn-helix XRE-family like proteins VC395_1197 SM00528 Domain in histone-like proteins of HNS family VC395_1209 SM00357 Cold shock protein domain VC395_1211 SM00382 ATPases associated with a variety of cellular activities VC395_1211 SM01086 C-terminal, D2-small domain, of ClpB protein VC395_1222 SM00448 cheY-homologous receiver domain VC395_1223 SM00387 Histidine kinase-like ATPases VC395_1286 SM00530 Helix-turn-helix XRE-family like proteins VC395_1296 SM00481 DNA polymerase alpha chain like domain VC395_1298 SM00363 S4 RNA-binding domain VC395_1299 SM00382 ATPases associated with a variety of cellular activities VC395_1300 SM00382 ATPases associated with a variety of cellular activities VC395_1304 SM00267 diguanylate cyclase VC395_1307 SM00919 Malic enzyme, NAD binding domain VC395_1307 SM01274 VC395_1307 VC395_1313 SM00271 DnaJ molecular chaperone homology domain VC395_1313 SM00671 Sel1-like repeats. VC395_1319 SM00020 Trypsin-like serine protease VC395_1325 SM00345 helix_turn_helix gluconate operon transcriptional repressor VC395_1325 SM00866 VC395_1325 VC395_1328 SM00841 Elongation factor P, C-terminal VC395_1328 SM01185 VC395_1328 VC395_1330 SM00052 Putative diguanylate phosphodiesterase VC395_1331 SM00486 DNA polymerase type-B family VC395_1332 SM00421 helix_turn_helix, Lux Regulon VC395_1332 SM00448 cheY-homologous receiver domain VC395_1333 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VC395_1333 SM00465 GIY-YIG type nucleases (URI domain) VC395_1335 SM00267 diguanylate cyclase VC395_1339 SM00873 B3/4 domain VC395_1339 SM00874 tRNA synthetase B5 domain VC395_1339 SM00896 Ferredoxin-fold anticodon binding domain VC395_1341 SM00411 bacterial (prokaryotic) histone like domain VC395_1359 SM00855 Phosphoglycerate mutase family VC395_1364 SM00382 ATPases associated with a variety of cellular activities VC395_1367 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_1367 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_1367 SM01049 VC395_1367 VC395_1371 SM00852 Probable molybdopterin binding domain VC395_1377 SM00434 DNA Topoisomerase IV VC395_1378 SM00450 Rhodanese Homology Domain VC395_1379 SM00342 helix_turn_helix, arabinose operon control protein VC395_1389 SM00849 Metallo-beta-lactamase superfamily VC395_1395 SM00387 Histidine kinase-like ATPases VC395_1395 SM01049 VC395_1395 VC395_1396 SM00421 helix_turn_helix, Lux Regulon VC395_1396 SM00448 cheY-homologous receiver domain VC395_1397 SM00347 helix_turn_helix multiple antibiotic resistance protein VC395_1399 SM00495 Chitin-binding domain type 3 VC395_1405 SM00354 helix_turn _helix lactose operon repressor VC395_1408 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_1408 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_1409 SM00479 VC395_1409 VC395_1410 SM00100 Cyclic nucleotide-monophosphate binding domain VC395_1410 SM00116 Domain in cystathionine beta-synthase and other proteins. VC395_1414 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_1414 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC395_1417 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_1417 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_1427 SM00091 PAS domain VC395_1427 SM00382 ATPases associated with a variety of cellular activities VC395_1431 SM01005 Alanine racemase, C-terminal domain VC395_1432 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_1432 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_1434 SM00387 Histidine kinase-like ATPases VC395_1435 SM00448 cheY-homologous receiver domain VC395_1438 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_1438 SM00387 Histidine kinase-like ATPases VC395_1438 SM00388 His Kinase A (phosphoacceptor) domain VC395_1439 SM00448 cheY-homologous receiver domain VC395_1439 SM00862 Transcriptional regulatory protein, C terminal VC395_1446 SM00382 ATPases associated with a variety of cellular activities VC395_1454 SM00345 helix_turn_helix gluconate operon transcriptional repressor VC395_1454 SM00895 VC395_1454 VC395_1467 SM00448 cheY-homologous receiver domain VC395_1467 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC395_1468 SM00073 Histidine Phosphotransfer domain VC395_1468 SM00091 PAS domain VC395_1468 SM00387 Histidine kinase-like ATPases VC395_1468 SM00388 His Kinase A (phosphoacceptor) domain VC395_1468 SM00448 cheY-homologous receiver domain VC395_1472 SM00267 diguanylate cyclase VC395_1473 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VC395_1478 SM00382 ATPases associated with a variety of cellular activities VC395_1481 SM00062 Bacterial periplasmic substrate-binding proteins VC395_1486 SM00028 Tetratricopeptide repeats VC395_1486 SM00267 diguanylate cyclase VC395_1489 SM00267 diguanylate cyclase VC395_1491 SM00267 diguanylate cyclase VC395_1495 SM00267 diguanylate cyclase VC395_1495 SM01079 VC395_1495 VC395_1496 SM00479 VC395_1496 VC395_1501 SM00382 ATPases associated with a variety of cellular activities VC395_1501 SM00487 DEAD-like helicases superfamily VC395_1501 SM00490 helicase superfamily c-terminal domain VC395_1501 SM00847 Helicase associated domain (HA2) Add an annotation VC395_1513 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_1514 SM00448 cheY-homologous receiver domain VC395_1516 SM00073 Histidine Phosphotransfer domain VC395_1516 SM00260 Two component signalling adaptor domain VC395_1516 SM00387 Histidine kinase-like ATPases VC395_1516 SM01231 VC395_1516 VC395_1517 SM00448 cheY-homologous receiver domain VC395_1518 SM00138 Methyltransferase, chemotaxis proteins VC395_1520 SM00448 cheY-homologous receiver domain VC395_1521 SM00260 Two component signalling adaptor domain VC395_1522 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_1524 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_1524 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_1525 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VC395_1525 SM00091 PAS domain VC395_1525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_1526 SM00487 DEAD-like helicases superfamily VC395_1526 SM00490 helicase superfamily c-terminal domain VC395_1532 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_1532 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_1548 SM00382 ATPases associated with a variety of cellular activities VC395_1554 SM00100 Cyclic nucleotide-monophosphate binding domain VC395_1554 SM00419 helix_turn_helix, cAMP Regulatory protein VC395_1564 SM00897 FIST N domain VC395_1564 SM01204 VC395_1564 VC395_1565 SM00387 Histidine kinase-like ATPases VC395_1565 SM00388 His Kinase A (phosphoacceptor) domain VC395_1565 SM00448 cheY-homologous receiver domain VC395_1566 SM00382 ATPases associated with a variety of cellular activities VC395_1578 SM00530 Helix-turn-helix XRE-family like proteins VC395_1581 SM00530 Helix-turn-helix XRE-family like proteins VC395_1585 SM00530 Helix-turn-helix XRE-family like proteins VC395_1591 SM00530 Helix-turn-helix XRE-family like proteins VC395_1595 SM00530 Helix-turn-helix XRE-family like proteins VC395_1606 SM00382 ATPases associated with a variety of cellular activities VC395_1608 SM00981 VC395_1608 VC395_1616 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VC395_1616 SM00245 tail specific protease VC395_1617 SM00945 ProQ/FINO family VC395_1619 SM00382 ATPases associated with a variety of cellular activities VC395_1623 SM00316 Ribosomal protein S1-like RNA-binding domain VC395_1632 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VC395_1639 SM00382 ATPases associated with a variety of cellular activities VC395_1640 SM00387 Histidine kinase-like ATPases VC395_1640 SM00388 His Kinase A (phosphoacceptor) domain VC395_1641 SM00382 ATPases associated with a variety of cellular activities VC395_1641 SM00448 cheY-homologous receiver domain VC395_1644 SM00382 ATPases associated with a variety of cellular activities VC395_1646 SM00852 Probable molybdopterin binding domain VC395_1651 SM01144 VC395_1651 VC395_1653 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_1669 SM00382 ATPases associated with a variety of cellular activities VC395_1670 SM00420 helix_turn_helix, Deoxyribose operon repressor VC395_1670 SM01134 VC395_1670 VC395_1674 SM00354 helix_turn _helix lactose operon repressor VC395_1679 SM00849 Metallo-beta-lactamase superfamily VC395_1684 SM00382 ATPases associated with a variety of cellular activities VC395_1692 SM01022 VC395_1692 VC395_1700 SM00248 ankyrin repeats VC395_1701 SM01060 VC395_1701 VC395_1707 SM00822 VC395_1707 VC395_1708 SM00052 Putative diguanylate phosphodiesterase VC395_1709 SM00267 diguanylate cyclase VC395_1718 SM00260 Two component signalling adaptor domain VC395_1718 SM00448 cheY-homologous receiver domain VC395_1720 SM00448 cheY-homologous receiver domain VC395_1721 SM00387 Histidine kinase-like ATPases VC395_1728 SM00028 Tetratricopeptide repeats VC395_1728 SM00386 HAT (Half-A-TPR) repeats VC395_1731 SM01321 VC395_1731 VC395_1738 SM00112 Cadherin repeats. VC395_1747 SM00382 ATPases associated with a variety of cellular activities VC395_1752 SM00363 S4 RNA-binding domain VC395_1753 SM00487 DEAD-like helicases superfamily VC395_1753 SM00490 helicase superfamily c-terminal domain VC395_1755 SM00448 cheY-homologous receiver domain VC395_1755 SM00862 Transcriptional regulatory protein, C terminal VC395_1756 SM00387 Histidine kinase-like ATPases VC395_1758 SM00052 Putative diguanylate phosphodiesterase VC395_1760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_1760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_1766 SM00020 Trypsin-like serine protease VC395_1768 SM00448 cheY-homologous receiver domain VC395_1769 SM00052 Putative diguanylate phosphodiesterase VC395_1769 SM00421 helix_turn_helix, Lux Regulon VC395_1769 SM00448 cheY-homologous receiver domain VC395_1770 SM00062 Bacterial periplasmic substrate-binding proteins VC395_1770 SM00073 Histidine Phosphotransfer domain VC395_1770 SM00387 Histidine kinase-like ATPases VC395_1770 SM00388 His Kinase A (phosphoacceptor) domain VC395_1770 SM00448 cheY-homologous receiver domain VC395_1770 SM00918 Ligated ion channel L-glutamate- and glycine-binding site VC395_1772 SM00116 Domain in cystathionine beta-synthase and other proteins. VC395_1777 SM00382 ATPases associated with a variety of cellular activities VC395_1784 SM00382 ATPases associated with a variety of cellular activities VC395_1788 SM00155 Phospholipase D. Active site motifs. VC395_1797 SM00382 ATPases associated with a variety of cellular activities VC395_1801 SM00382 ATPases associated with a variety of cellular activities VC395_1802 SM00382 ATPases associated with a variety of cellular activities VC395_1805 SM01131 VC395_1805 VC395_1827 SM00052 Putative diguanylate phosphodiesterase VC395_1827 SM00091 PAS domain VC395_1828 SM00729 Elongator protein 3, MiaB family, Radical SAM VC395_1836 SM00448 cheY-homologous receiver domain VC395_1836 SM00862 Transcriptional regulatory protein, C terminal VC395_1838 SM00354 helix_turn _helix lactose operon repressor VC395_1846 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VC395_1846 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VC395_1846 SM00493 VC395_1846 VC395_1853 SM00316 Ribosomal protein S1-like RNA-binding domain VC395_1875 SM00487 DEAD-like helicases superfamily VC395_1875 SM00490 helicase superfamily c-terminal domain VC395_1879 SM00487 DEAD-like helicases superfamily VC395_1890 SM01130 VC395_1890 VC395_1932 SM00382 ATPases associated with a variety of cellular activities VC395_1940 SM00342 helix_turn_helix, arabinose operon control protein VC395_1946 SM00387 Histidine kinase-like ATPases VC395_1946 SM00388 His Kinase A (phosphoacceptor) domain VC395_1946 SM00448 cheY-homologous receiver domain VC395_1960 SM00382 ATPases associated with a variety of cellular activities VC395_1961 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VC395_1963 SM00840 VC395_1963 VC395_1966 SM00052 Putative diguanylate phosphodiesterase VC395_1970 SM00491 VC395_1970 VC395_1974 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_1974 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_1978 SM00062 Bacterial periplasmic substrate-binding proteins VC395_1978 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VC395_1979 SM00382 ATPases associated with a variety of cellular activities VC395_1983 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_1987 SM00763 PrkA AAA domain VC395_1993 SM00382 ATPases associated with a variety of cellular activities VC395_1994 SM00849 Metallo-beta-lactamase superfamily VC395_1998 SM00382 ATPases associated with a variety of cellular activities VC395_2001 SM00487 DEAD-like helicases superfamily VC395_2001 SM00490 helicase superfamily c-terminal domain VC395_2001 SM00982 VC395_2001 VC395_2001 SM01058 CarD-like/TRCF domain VC395_2013 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_2013 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_2015 SM00345 helix_turn_helix gluconate operon transcriptional repressor VC395_2018 SM00843 VC395_2018 VC395_2019 SM00344 helix_turn_helix ASNC type VC395_2020 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VC395_2020 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VC395_2026 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VC395_2027 SM00028 Tetratricopeptide repeats VC395_2029 SM00411 bacterial (prokaryotic) histone like domain VC395_2030 SM00316 Ribosomal protein S1-like RNA-binding domain VC395_2032 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VC395_2034 SM00411 bacterial (prokaryotic) histone like domain VC395_2035 SM00382 ATPases associated with a variety of cellular activities VC395_2035 SM00464 Found in ATP-dependent protease La (LON) VC395_2036 SM00382 ATPases associated with a variety of cellular activities VC395_2036 SM00994 ClpX C4-type zinc finger VC395_2036 SM01086 C-terminal, D2-small domain, of ClpB protein VC395_2040 SM00387 Histidine kinase-like ATPases VC395_2040 SM00388 His Kinase A (phosphoacceptor) domain VC395_2041 SM00382 ATPases associated with a variety of cellular activities VC395_2041 SM00448 cheY-homologous receiver domain VC395_2049 SM00052 Putative diguanylate phosphodiesterase VC395_2049 SM00267 diguanylate cyclase VC395_2052 SM00563 Phosphate acyltransferases VC395_2067 SM00495 Chitin-binding domain type 3 VC395_2067 SM00636 VC395_2067 VC395_2079 SM00978 VC395_2079 VC395_2081 SM00563 Phosphate acyltransferases VC395_2082 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_2082 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_2083 SM00530 Helix-turn-helix XRE-family like proteins VC395_2087 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VC395_2093 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC395_2094 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC395_2095 SM01144 VC395_2095 VC395_2099 SM00474 3'-5' exonuclease VC395_2105 SM00487 DEAD-like helicases superfamily VC395_2105 SM00491 VC395_2105 VC395_2110 SM00870 VC395_2110 VC395_2115 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC395_2121 SM00260 Two component signalling adaptor domain VC395_2121 SM00448 cheY-homologous receiver domain VC395_2134 SM00825 Beta-ketoacyl synthase VC395_2136 SM00822 VC395_2136 VC395_2137 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VC395_2143 SM00363 S4 RNA-binding domain VC395_2145 SM00316 Ribosomal protein S1-like RNA-binding domain VC395_2151 SM00859 Semialdehyde dehydrogenase, NAD binding domain VC395_2153 SM00073 Histidine Phosphotransfer domain VC395_2158 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VC395_2158 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VC395_2158 SM00493 VC395_2158 VC395_2172 SM00382 ATPases associated with a variety of cellular activities VC395_2174 SM00260 Two component signalling adaptor domain VC395_2175 SM00260 Two component signalling adaptor domain VC395_2177 SM00448 cheY-homologous receiver domain VC395_2178 SM00073 Histidine Phosphotransfer domain VC395_2178 SM00260 Two component signalling adaptor domain VC395_2178 SM00387 Histidine kinase-like ATPases VC395_2178 SM01231 VC395_2178 VC395_2180 SM00448 cheY-homologous receiver domain VC395_2183 SM00382 ATPases associated with a variety of cellular activities VC395_2183 SM00962 SRP54-type protein, GTPase domain VC395_2185 SM00855 Phosphoglycerate mutase family VC395_2189 SM00836 DALR anticodon binding domain VC395_2189 SM01016 Arginyl tRNA synthetase N terminal dom VC395_2193 SM00899 VC395_2193 VC395_2195 SM00342 helix_turn_helix, arabinose operon control protein VC395_2197 SM00382 ATPases associated with a variety of cellular activities VC395_2199 SM00881 CoA binding domain VC395_2202 SM00861 Transketolase, pyrimidine binding domain VC395_2221 SM00859 Semialdehyde dehydrogenase, NAD binding domain VC395_2223 SM00825 Beta-ketoacyl synthase VC395_2233 SM00463 Small MutS-related domain VC395_2244 SM00382 ATPases associated with a variety of cellular activities VC395_2249 SM00382 ATPases associated with a variety of cellular activities VC395_2249 SM00448 cheY-homologous receiver domain VC395_2250 SM00091 PAS domain VC395_2250 SM00387 Histidine kinase-like ATPases VC395_2250 SM00388 His Kinase A (phosphoacceptor) domain VC395_2251 SM00382 ATPases associated with a variety of cellular activities VC395_2271 SM01130 VC395_2271 VC395_2275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_2275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_2278 SM00028 Tetratricopeptide repeats VC395_2293 SM00937 VC395_2293 VC395_2297 SM01400 VC395_2297 VC395_2301 SM01321 VC395_2301 VC395_2308 SM00047 Lysozyme subfamily 2 VC395_2317 SM00138 Methyltransferase, chemotaxis proteins VC395_2318 SM00260 Two component signalling adaptor domain VC395_2318 SM00448 cheY-homologous receiver domain VC395_2319 SM00858 VC395_2319 VC395_2325 SM00823 Phosphopantetheine attachment site VC395_2333 SM01081 Putative carbohydrate binding domain VC395_2338 SM00463 Small MutS-related domain VC395_2339 SM00363 S4 RNA-binding domain VC395_2340 SM00267 diguanylate cyclase VC395_2349 SM00479 VC395_2349 VC395_2352 SM00849 Metallo-beta-lactamase superfamily VC395_2353 SM00257 Lysin motif VC395_2355 SM00938 Nitrogen regulatory protein P-II VC395_2358 SM00977 TilS substrate C-terminal domain VC395_2361 SM00481 DNA polymerase alpha chain like domain VC395_2367 SM00935 Outer membrane protein (OmpH-like) VC395_2369 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VC395_2378 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC395_2390 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VC395_2401 SM00267 diguanylate cyclase VC395_2409 SM00900 VC395_2409 VC395_2419 SM00464 Found in ATP-dependent protease La (LON) VC395_2428 SM00925 MltA specific insert domain VC395_2452 SM00354 helix_turn _helix lactose operon repressor VC395_2453 SM01038 Beta galactosidase small chain VC395_2457 SM00838 Elongation factor G C-terminus VC395_2457 SM00889 Elongation factor G, domain IV VC395_2458 SM00382 ATPases associated with a variety of cellular activities VC395_2464 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VC395_2465 SM01133 VC395_2465 VC395_2474 SM00986 Uracil DNA glycosylase superfamily VC395_2474 SM00987 UreE urease accessory protein, C-terminal domain VC395_2475 SM00518 AP endonuclease family 2 VC395_2483 SM00448 cheY-homologous receiver domain VC395_2483 SM00862 Transcriptional regulatory protein, C terminal VC395_2484 SM00073 Histidine Phosphotransfer domain VC395_2484 SM00091 PAS domain VC395_2484 SM00387 Histidine kinase-like ATPases VC395_2484 SM00388 His Kinase A (phosphoacceptor) domain VC395_2484 SM00448 cheY-homologous receiver domain VC395_2485 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VC395_2485 SM00091 PAS domain VC395_2485 SM00267 diguanylate cyclase VC395_2486 SM00729 Elongator protein 3, MiaB family, Radical SAM VC395_2502 SM00507 HNH nucleases VC395_2504 SM00851 MGS-like domain VC395_2504 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VC395_2505 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VC395_2509 SM00957 SecA DEAD-like domain VC395_2509 SM00958 SecA preprotein cross-linking domain VC395_2512 SM00864 Tubulin/FtsZ family, GTPase domain VC395_2512 SM00865 Tubulin/FtsZ family, C-terminal domain VC395_2513 SM00842 Cell division protein FtsA VC395_2530 SM00345 helix_turn_helix gluconate operon transcriptional repressor VC395_2530 SM00895 VC395_2530 VC395_2536 SM00644 VC395_2536 VC395_2545 SM00434 DNA Topoisomerase IV VC395_2546 SM00387 Histidine kinase-like ATPases VC395_2546 SM00433 TopoisomeraseII VC395_2554 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_2554 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_2555 SM00880 VC395_2555 VC395_2555 SM01118 VC395_2555 VC395_2558 SM00287 Bacterial SH3 domain homologues VC395_2560 SM00382 ATPases associated with a variety of cellular activities VC395_2562 SM01192 VC395_2562 VC395_2562 SM01193 VC395_2562 VC395_2566 SM00954 Region found in RelA / SpoT proteins VC395_2568 SM00073 Histidine Phosphotransfer domain VC395_2568 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_2568 SM00387 Histidine kinase-like ATPases VC395_2568 SM00388 His Kinase A (phosphoacceptor) domain VC395_2568 SM00448 cheY-homologous receiver domain VC395_2569 SM00267 diguanylate cyclase VC395_2576 SM00358 Double-stranded RNA binding motif VC395_2576 SM00535 Ribonuclease III family VC395_2602 SM00014 Acid phosphatase homologues VC395_2604 SM00917 LeuA allosteric (dimerisation) domain VC395_2605 SM01329 VC395_2605 VC395_2611 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC395_2620 SM00487 DEAD-like helicases superfamily VC395_2620 SM00490 helicase superfamily c-terminal domain VC395_2621 SM00670 Large family of predicted nucleotide-binding domains VC395_2627 SM00563 Phosphate acyltransferases VC395_2634 SM00382 ATPases associated with a variety of cellular activities VC395_2637 SM00116 Domain in cystathionine beta-synthase and other proteins. VC395_2641 SM00382 ATPases associated with a variety of cellular activities VC395_2647 SM00924 MgtE intracellular N domain VC395_2650 SM00382 ATPases associated with a variety of cellular activities VC395_2666 SM00382 ATPases associated with a variety of cellular activities VC395_2676 SM00487 DEAD-like helicases superfamily VC395_2676 SM00490 helicase superfamily c-terminal domain VC395_2681 SM01321 VC395_2681 VC395_2684 SM00662 RNA polymerases D VC395_2685 SM00363 S4 RNA-binding domain VC395_2685 SM01390 VC395_2685 VC395_2698 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VC395_2699 SM01374 VC395_2699 VC395_2703 SM00322 K homology RNA-binding domain VC395_2706 SM01382 VC395_2706 VC395_2706 SM01383 VC395_2706 VC395_2710 SM01403 VC395_2710 VC395_2711 SM00967 RNA 2'-O ribose methyltransferase substrate binding VC395_2712 SM00316 Ribosomal protein S1-like RNA-binding domain VC395_2712 SM00357 Cold shock protein domain VC395_2712 SM00955 VC395_2712 VC395_2714 SM00671 Sel1-like repeats. VC395_2715 SM00788 Adenylosuccinate synthetase VC395_2721 SM00382 ATPases associated with a variety of cellular activities VC395_2727 SM00100 Cyclic nucleotide-monophosphate binding domain VC395_2727 SM00419 helix_turn_helix, cAMP Regulatory protein VC395_2728 SM01150 VC395_2728 VC395_2733 SM00729 Elongator protein 3, MiaB family, Radical SAM VC395_2743 SM00965 Secretin and TonB N terminus short domain VC395_2757 SM00859 Semialdehyde dehydrogenase, NAD binding domain VC395_2762 SM00971 Serine acetyltransferase, N-terminal VC395_2767 SM00450 Rhodanese Homology Domain VC395_2773 SM00841 Elongation factor P, C-terminal VC395_2773 SM01185 VC395_2773 VC395_2778 SM00883 Chaperonin 10 Kd subunit VC395_2787 SM00382 ATPases associated with a variety of cellular activities VC395_2787 SM01086 C-terminal, D2-small domain, of ClpB protein VC395_2790 SM00354 helix_turn _helix lactose operon repressor VC395_2791 SM00487 DEAD-like helicases superfamily VC395_2791 SM00490 helicase superfamily c-terminal domain VC395_2794 SM00919 Malic enzyme, NAD binding domain VC395_2794 SM01274 VC395_2794 VC395_2805 SM00448 cheY-homologous receiver domain VC395_2805 SM00862 Transcriptional regulatory protein, C terminal VC395_2806 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_2806 SM00387 Histidine kinase-like ATPases VC395_2806 SM00388 His Kinase A (phosphoacceptor) domain VC395_2810 SM00267 diguanylate cyclase VC395_2815 SM00421 helix_turn_helix, Lux Regulon VC395_2815 SM00448 cheY-homologous receiver domain VC395_2816 SM01091 Transporter associated domain VC395_2820 SM00072 Guanylate kinase homologues. VC395_2821 SM01409 VC395_2821 VC395_2822 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC395_2822 SM00954 Region found in RelA / SpoT proteins VC395_2823 SM00487 DEAD-like helicases superfamily VC395_2823 SM00490 helicase superfamily c-terminal domain VC395_2825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_2825 SM00387 Histidine kinase-like ATPases VC395_2825 SM00388 His Kinase A (phosphoacceptor) domain VC395_2826 SM00448 cheY-homologous receiver domain VC395_2826 SM00862 Transcriptional regulatory protein, C terminal VC395_2828 SM00316 Ribosomal protein S1-like RNA-binding domain VC395_2828 SM00732 Likely ribonuclease with RNase H fold. VC395_2844 SM00382 ATPases associated with a variety of cellular activities VC395_2847 SM00363 S4 RNA-binding domain VC395_2858 SM01230 VC395_2858 VC395_2860 SM00091 PAS domain VC395_2860 SM00387 Histidine kinase-like ATPases VC395_2860 SM00388 His Kinase A (phosphoacceptor) domain VC395_2861 SM00382 ATPases associated with a variety of cellular activities VC395_2861 SM00448 cheY-homologous receiver domain VC395_2862 SM00052 Putative diguanylate phosphodiesterase VC395_2862 SM00267 diguanylate cyclase VC395_A0008 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A0008 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0008 SM01049 VC395_A0008 VC395_A0010 SM00421 helix_turn_helix, Lux Regulon VC395_A0013 SM00642 Alpha-amylase domain VC395_A0024 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VC395_A0024 SM00495 Chitin-binding domain type 3 VC395_A0024 SM00636 VC395_A0024 VC395_A0027 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A0027 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0031 SM00014 Acid phosphatase homologues VC395_A0040 SM00245 tail specific protease VC395_A0044 SM00267 diguanylate cyclase VC395_A0045 SM00028 Tetratricopeptide repeats VC395_A0050 SM00422 helix_turn_helix, mercury resistance VC395_A0052 SM00257 Lysin motif VC395_A0054 SM00487 DEAD-like helicases superfamily VC395_A0054 SM00490 helicase superfamily c-terminal domain VC395_A0061 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A0061 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0066 SM00382 ATPases associated with a variety of cellular activities VC395_A0067 SM00267 diguanylate cyclase VC395_A0074 SM00052 Putative diguanylate phosphodiesterase VC395_A0074 SM00267 diguanylate cyclase VC395_A0077 SM00422 helix_turn_helix, mercury resistance VC395_A0093 SM00450 Rhodanese Homology Domain VC395_A0094 SM00052 Putative diguanylate phosphodiesterase VC395_A0109 SM00382 ATPases associated with a variety of cellular activities VC395_A0109 SM01086 C-terminal, D2-small domain, of ClpB protein VC395_A0110 SM00382 ATPases associated with a variety of cellular activities VC395_A0121 SM00382 ATPases associated with a variety of cellular activities VC395_A0125 SM00354 helix_turn _helix lactose operon repressor VC395_A0128 SM00100 Cyclic nucleotide-monophosphate binding domain VC395_A0133 SM00495 Chitin-binding domain type 3 VC395_A0134 SM00091 PAS domain VC395_A0134 SM00387 Histidine kinase-like ATPases VC395_A0134 SM00388 His Kinase A (phosphoacceptor) domain VC395_A0135 SM00382 ATPases associated with a variety of cellular activities VC395_A0135 SM00448 cheY-homologous receiver domain VC395_A0158 SM00267 diguanylate cyclase VC395_A0159 SM00357 Cold shock protein domain VC395_A0162 SM00028 Tetratricopeptide repeats VC395_A0163 SM00327 von Willebrand factor (vWF) type A domain VC395_A0167 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A0167 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0173 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VC395_A0173 SM00382 ATPases associated with a variety of cellular activities VC395_A0175 SM00357 Cold shock protein domain VC395_A0180 SM00448 cheY-homologous receiver domain VC395_A0188 SM01240 VC395_A0188 VC395_A0204 SM00530 Helix-turn-helix XRE-family like proteins VC395_A0209 SM01040 BRO family, N-terminal domain VC395_A0241 SM01321 VC395_A0241 VC395_A0242 SM00487 DEAD-like helicases superfamily VC395_A0242 SM00490 helicase superfamily c-terminal domain VC395_A0247 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC395_A0248 SM00387 Histidine kinase-like ATPases VC395_A0254 SM00267 diguanylate cyclase VC395_A0257 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A0257 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0260 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VC395_A0267 SM00382 ATPases associated with a variety of cellular activities VC395_A0268 SM00342 helix_turn_helix, arabinose operon control protein VC395_A0275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0275 SM00387 Histidine kinase-like ATPases VC395_A0275 SM00388 His Kinase A (phosphoacceptor) domain VC395_A0276 SM00448 cheY-homologous receiver domain VC395_A0276 SM00862 Transcriptional regulatory protein, C terminal VC395_A0279 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VC395_A0281 SM01007 Class II Aldolase and Adducin N-terminal domain VC395_A0284 SM00420 helix_turn_helix, Deoxyribose operon repressor VC395_A0284 SM01134 VC395_A0284 VC395_A0287 SM00642 Alpha-amylase domain VC395_A0294 SM00448 cheY-homologous receiver domain VC395_A0294 SM00862 Transcriptional regulatory protein, C terminal VC395_A0295 SM00387 Histidine kinase-like ATPases VC395_A0295 SM00388 His Kinase A (phosphoacceptor) domain VC395_A0301 SM00422 helix_turn_helix, mercury resistance VC395_A0303 SM00342 helix_turn_helix, arabinose operon control protein VC395_A0305 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A0305 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0307 SM00936 Penicillin-binding protein 5, C-terminal domain VC395_A0311 SM01057 Eukaryotic-type carbonic anhydrase VC395_A0312 SM01321 VC395_A0312 VC395_A0316 SM00530 Helix-turn-helix XRE-family like proteins VC395_A0324 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VC395_A0342 SM00530 Helix-turn-helix XRE-family like proteins VC395_A0388 SM00886 Stress responsive A/B Barrel Domain VC395_A0488 SM00857 Resolvase, N terminal domain VC395_A0503 SM01321 VC395_A0503 VC395_A0527 SM00271 DnaJ molecular chaperone homology domain VC395_A0530 SM00052 Putative diguanylate phosphodiesterase VC395_A0530 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VC395_A0530 SM00267 diguanylate cyclase VC395_A0533 SM00382 ATPases associated with a variety of cellular activities VC395_A0535 SM00984 UDP binding domain VC395_A0537 SM00797 Allophanate hydrolase subunit 2 VC395_A0538 SM00796 Allophanate hydrolase subunit 1 VC395_A0541 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A0541 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0546 SM00487 DEAD-like helicases superfamily VC395_A0546 SM00490 helicase superfamily c-terminal domain VC395_A0551 SM00382 ATPases associated with a variety of cellular activities VC395_A0552 SM00327 von Willebrand factor (vWF) type A domain VC395_A0554 SM00382 ATPases associated with a variety of cellular activities VC395_A0555 SM00062 Bacterial periplasmic substrate-binding proteins VC395_A0555 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VC395_A0578 SM00387 Histidine kinase-like ATPases VC395_A0578 SM00388 His Kinase A (phosphoacceptor) domain VC395_A0578 SM00448 cheY-homologous receiver domain VC395_A0588 SM00382 ATPases associated with a variety of cellular activities VC395_A0592 SM00989 VC395_A0592 VC395_A0593 SM00387 Histidine kinase-like ATPases VC395_A0601 SM00851 MGS-like domain VC395_A0603 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0603 SM00387 Histidine kinase-like ATPases VC395_A0603 SM00388 His Kinase A (phosphoacceptor) domain VC395_A0603 SM00448 cheY-homologous receiver domain VC395_A0607 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0607 SM00387 Histidine kinase-like ATPases VC395_A0607 SM00388 His Kinase A (phosphoacceptor) domain VC395_A0608 SM00448 cheY-homologous receiver domain VC395_A0612 SM00495 Chitin-binding domain type 3 VC395_A0612 SM00636 VC395_A0612 VC395_A0615 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VC395_A0615 SM00267 diguanylate cyclase VC395_A0621 SM00822 VC395_A0621 VC395_A0625 SM00382 ATPases associated with a variety of cellular activities VC395_A0629 SM00387 Histidine kinase-like ATPases VC395_A0630 SM00421 helix_turn_helix, Lux Regulon VC395_A0630 SM00448 cheY-homologous receiver domain VC395_A0631 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC395_A0634 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VC395_A0637 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0637 SM00387 Histidine kinase-like ATPases VC395_A0638 SM00421 helix_turn_helix, Lux Regulon VC395_A0638 SM00448 cheY-homologous receiver domain VC395_A0639 SM00354 helix_turn _helix lactose operon repressor VC395_A0649 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A0649 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0654 SM00091 PAS domain VC395_A0654 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A0657 SM00640 Glycosyl hydrolases family 32 VC395_A0658 SM00354 helix_turn _helix lactose operon repressor VC395_A0666 SM00563 Phosphate acyltransferases VC395_A0668 SM00450 Rhodanese Homology Domain VC395_A0670 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VC395_A0691 SM00861 Transketolase, pyrimidine binding domain VC395_A0695 SM00450 Rhodanese Homology Domain VC395_A0698 SM00852 Probable molybdopterin binding domain VC395_A0713 SM00382 ATPases associated with a variety of cellular activities VC395_A0715 SM00345 helix_turn_helix gluconate operon transcriptional repressor VC395_A0715 SM00866 VC395_A0715 VC395_A0726 SM00382 ATPases associated with a variety of cellular activities VC395_A0741 SM00881 CoA binding domain VC395_A0754 SM00530 Helix-turn-helix XRE-family like proteins VC395_A0759 SM00448 cheY-homologous receiver domain VC395_A0759 SM00862 Transcriptional regulatory protein, C terminal VC395_A0760 SM00387 Histidine kinase-like ATPases VC395_A0760 SM00388 His Kinase A (phosphoacceptor) domain VC395_A0762 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VC395_A0762 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VC395_A0765 SM00267 diguanylate cyclase VC395_A0768 SM00062 Bacterial periplasmic substrate-binding proteins VC395_A0768 SM00267 diguanylate cyclase VC395_A0775 SM00782 PhnA Zinc-Ribbon VC395_A0784 SM00116 Domain in cystathionine beta-synthase and other proteins. VC395_A0785 SM00867 YceI-like domain VC395_A0788 SM00052 Putative diguanylate phosphodiesterase VC395_A0792 SM00448 cheY-homologous receiver domain VC395_A0792 SM00862 Transcriptional regulatory protein, C terminal VC395_A0793 SM00387 Histidine kinase-like ATPases VC395_A0793 SM00388 His Kinase A (phosphoacceptor) domain VC395_A0794 SM00890 Domain of unknown function VC395_A0797 SM00833 Cobalamin synthesis protein cobW C-terminal domain VC395_A0802 SM00387 Histidine kinase-like ATPases VC395_A0802 SM00448 cheY-homologous receiver domain VC395_A0805 SM00354 helix_turn _helix lactose operon repressor VC395_A0819 SM00857 Resolvase, N terminal domain VC395_A0827 SM00020 Trypsin-like serine protease VC395_A0828 SM00487 DEAD-like helicases superfamily VC395_A0828 SM00490 helicase superfamily c-terminal domain VC395_A0829 SM00357 Cold shock protein domain VC395_A0829 SM00955 VC395_A0829 VC395_A0842 SM00924 MgtE intracellular N domain VC395_A0843 SM00883 Chaperonin 10 Kd subunit VC395_A0860 SM01266 VC395_A0860 VC395_A0861 SM01091 Transporter associated domain VC395_A0867 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC395_A0874 SM00448 cheY-homologous receiver domain VC395_A0874 SM00850 LytTr DNA-binding domain VC395_A0875 SM00387 Histidine kinase-like ATPases VC395_A0879 SM00382 ATPases associated with a variety of cellular activities VC395_A0884 SM00642 Alpha-amylase domain VC395_A0888 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VC395_A0888 SM00091 PAS domain VC395_A0888 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A0895 SM00345 helix_turn_helix gluconate operon transcriptional repressor VC395_A0910 SM00829 Enoylreductase VC395_A0913 SM00421 helix_turn_helix, Lux Regulon VC395_A0919 SM00481 DNA polymerase alpha chain like domain VC395_A0923 SM01350 VC395_A0923 VC395_A0925 SM00849 Metallo-beta-lactamase superfamily VC395_A0931 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A0931 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0934 SM00729 Elongator protein 3, MiaB family, Radical SAM VC395_A0940 SM00382 ATPases associated with a variety of cellular activities VC395_A0948 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A0948 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A0951 SM00342 helix_turn_helix, arabinose operon control protein VC395_A0956 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC395_A0958 SM00357 Cold shock protein domain VC395_A0962 SM00342 helix_turn_helix, arabinose operon control protein VC395_A0964 SM00091 PAS domain VC395_A0964 SM00267 diguanylate cyclase VC395_A0965 SM00420 helix_turn_helix, Deoxyribose operon repressor VC395_A0965 SM01134 VC395_A0965 VC395_A0971 SM00382 ATPases associated with a variety of cellular activities VC395_A0974 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. VC395_A0977 SM00421 helix_turn_helix, Lux Regulon VC395_A0979 SM00260 Two component signalling adaptor domain VC395_A0979 SM00448 cheY-homologous receiver domain VC395_A0980 SM00347 helix_turn_helix multiple antibiotic resistance protein VC395_A0981 SM00267 diguanylate cyclase VC395_A0983 SM00530 Helix-turn-helix XRE-family like proteins VC395_A0985 SM00267 diguanylate cyclase VC395_A0985 SM01079 VC395_A0985 VC395_A0990 SM00267 diguanylate cyclase VC395_A0999 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A0999 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A1002 SM00382 ATPases associated with a variety of cellular activities VC395_A1003 SM00062 Bacterial periplasmic substrate-binding proteins VC395_A1004 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A1012 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A1014 SM00487 DEAD-like helicases superfamily VC395_A1014 SM00490 helicase superfamily c-terminal domain VC395_A1020 SM00382 ATPases associated with a variety of cellular activities VC395_A1025 SM00342 helix_turn_helix, arabinose operon control protein VC395_A1029 SM00347 helix_turn_helix multiple antibiotic resistance protein VC395_A1042 SM00342 helix_turn_helix, arabinose operon control protein VC395_A1042 SM01009 AlkA N-terminal domain VC395_A1046 SM01154 VC395_A1046 VC395_A1049 SM00671 Sel1-like repeats. VC395_A1052 SM00642 Alpha-amylase domain VC395_A1054 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A1054 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A1057 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A1057 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A1060 SM00382 ATPases associated with a variety of cellular activities VC395_A1062 SM00062 Bacterial periplasmic substrate-binding proteins VC395_A1072 SM00849 Metallo-beta-lactamase superfamily VC395_A1076 SM00450 Rhodanese Homology Domain VC395_A1079 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A1079 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A1090 SM00344 helix_turn_helix ASNC type VC395_A1091 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A1091 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A1096 SM00342 helix_turn_helix, arabinose operon control protein VC395_A1100 SM00421 helix_turn_helix, Lux Regulon VC395_A1104 SM00052 Putative diguanylate phosphodiesterase VC395_A1104 SM00267 diguanylate cyclase VC395_A1105 SM00382 ATPases associated with a variety of cellular activities VC395_A1107 SM00331 Sigma factor PP2C-like phosphatases VC395_A1107 SM00448 cheY-homologous receiver domain VC395_A1109 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A1110 SM00448 cheY-homologous receiver domain VC395_A1112 SM00138 Methyltransferase, chemotaxis proteins VC395_A1113 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC395_A1113 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC395_A1114 SM00260 Two component signalling adaptor domain VC395_A1115 SM00260 Two component signalling adaptor domain VC395_A1116 SM00073 Histidine Phosphotransfer domain VC395_A1116 SM00260 Two component signalling adaptor domain VC395_A1116 SM00387 Histidine kinase-like ATPases VC395_A1116 SM01231 VC395_A1116 VC395_A1117 SM00448 cheY-homologous receiver domain VC395_A1122 SM00382 ATPases associated with a variety of cellular activities VC395_A1125 SM00387 Histidine kinase-like ATPases VC395_A1125 SM00388 His Kinase A (phosphoacceptor) domain VC395_A1126 SM00448 cheY-homologous receiver domain VC395_A1126 SM00862 Transcriptional regulatory protein, C terminal VC395_A1128 SM00822 VC395_A1128 VC395_A1129 SM01236 VC395_A1129 VC395_A1134 SM00470 ParB-like nuclease domain