locus-tag class description HPY11_00005 PF00308 Bacterial dnaA protein HPY11_00005 PF08299 Bacterial dnaA protein helix-turn-helix HPY11_00005 PF11638 DnaA N-terminal domain HPY11_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HPY11_00010 PF02767 DNA polymerase III beta subunit, central domain HPY11_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HPY11_00015 PF02463 RecF/RecN/SMC N terminal domain HPY11_00020 PF00204 DNA gyrase B HPY11_00020 PF00986 DNA gyrase B subunit, carboxyl terminus HPY11_00020 PF18053 DNA gyrase B subunit insert domain HPY11_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_00020 PF01751 Toprim domain HPY11_00030 PF00011 Hsp20/alpha crystallin family HPY11_00035 PF00155 Aminotransferase class I and II HPY11_00040 PF02092 Glycyl-tRNA synthetase beta subunit HPY11_00040 PF05746 DALR anticodon binding domain HPY11_00045 PF02091 Glycyl-tRNA synthetase alpha subunit HPY11_00050 PF01169 Uncharacterized protein family UPF0016 HPY11_00060 PF01206 Sulfurtransferase TusA HPY11_00070 PF08240 Alcohol dehydrogenase GroES-like domain HPY11_00070 PF00107 Zinc-binding dehydrogenase HPY11_00075 PF00291 Pyridoxal-phosphate dependent enzyme HPY11_00075 PF00585 C-terminal regulatory domain of Threonine dehydratase HPY11_00080 PF00920 Dehydratase family HPY11_00085 PF01063 Amino-transferase class IV HPY11_00095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY11_00095 PF00205 Thiamine pyrophosphate enzyme, central domain HPY11_00095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY11_00100 PF01078 Magnesium chelatase, subunit ChlI HPY11_00100 PF13335 Magnesium chelatase, subunit ChlI C-terminal HPY11_00105 PF01553 Acyltransferase HPY11_00110 PF01323 DSBA-like thioredoxin domain HPY11_00115 PF01636 Phosphotransferase enzyme family HPY11_00120 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HPY11_00120 PF12801 4Fe-4S binding domain HPY11_00120 PF13746 4Fe-4S dicluster domain HPY11_00125 PF06288 Protein of unknown function (DUF1040) HPY11_00130 PF07070 SpoOM protein HPY11_00135 PF03006 Haemolysin-III related HPY11_00145 PF02386 Cation transport protein HPY11_00150 PF02254 TrkA-N domain HPY11_00150 PF02080 TrkA-C domain HPY11_00155 PF01189 16S rRNA methyltransferase RsmB/F HPY11_00155 PF01029 NusB family HPY11_00160 PF02911 Formyl transferase, C-terminal domain HPY11_00160 PF00551 Formyl transferase HPY11_00165 PF01327 Polypeptide deformylase HPY11_00170 PF01476 LysM domain HPY11_00175 PF02481 DNA recombination-mediator protein A HPY11_00175 PF17782 DprA winged helix domain HPY11_00180 PF04361 Protein of unknown function (DUF494) HPY11_00185 PF01396 Topoisomerase DNA binding C4 zinc finger HPY11_00190 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HPY11_00190 PF02222 ATP-grasp domain HPY11_00195 PF00731 AIR carboxylase HPY11_00200 PF01300 Telomere recombination HPY11_00205 PF01218 Coproporphyrinogen III oxidase HPY11_00210 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HPY11_00210 PF08501 Shikimate dehydrogenase substrate binding domain HPY11_00210 PF01488 Shikimate / quinate 5-dehydrogenase HPY11_00220 PF00132 Bacterial transferase hexapeptide (six repeats) HPY11_00260 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HPY11_00265 PF01964 Radical SAM ThiC family HPY11_00265 PF13667 ThiC-associated domain HPY11_00270 PF02581 Thiamine monophosphate synthase HPY11_00275 PF00899 ThiF family HPY11_00280 PF02597 ThiS family HPY11_00285 PF05690 Thiazole biosynthesis protein ThiG HPY11_00290 PF04055 Radical SAM superfamily HPY11_00290 PF06968 Biotin and Thiamin Synthesis associated domain HPY11_00295 PF00557 Metallopeptidase family M24 HPY11_00295 PF01321 Creatinase/Prolidase N-terminal domain HPY11_00295 PF01321 Creatinase/Prolidase N-terminal domain HPY11_00295 PF00557 Metallopeptidase family M24 HPY11_00300 PF03466 LysR substrate binding domain HPY11_00300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_00305 PF07690 Major Facilitator Superfamily HPY11_00315 PF01037 Lrp/AsnC ligand binding domain HPY11_00320 PF08448 PAS fold HPY11_00320 PF00990 Diguanylate cyclase, GGDEF domain HPY11_00320 PF00563 EAL domain HPY11_00325 PF04445 Putative SAM-dependent methyltransferase HPY11_00335 PF00892 EamA-like transporter family HPY11_00340 PF00582 Universal stress protein family HPY11_00345 PF00210 Ferritin-like domain HPY11_00350 PF10625 Universal stress protein B (UspB) HPY11_00365 PF02646 RmuC family HPY11_00370 PF01209 ubiE/COQ5 methyltransferase family HPY11_00375 PF02036 SCP-2 sterol transfer family HPY11_00380 PF03109 ABC1 family HPY11_00385 PF02416 mttA/Hcf106 family HPY11_00390 PF02416 mttA/Hcf106 family HPY11_00395 PF00902 Sec-independent protein translocase protein (TatC) HPY11_00400 PF01554 MatE HPY11_00410 PF00717 Peptidase S24-like HPY11_00410 PF01726 LexA DNA binding domain HPY11_00415 PF01553 Acyltransferase HPY11_00420 PF01040 UbiA prenyltransferase family HPY11_00425 PF04345 Chorismate lyase HPY11_00430 PF03748 Flagellar basal body-associated protein FliL HPY11_00435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_00435 PF02203 Tar ligand binding domain homologue HPY11_00435 PF00672 HAMP domain HPY11_00440 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HPY11_00440 PF01694 Rhomboid family HPY11_00445 PF00581 Rhodanese-like domain HPY11_00450 PF01026 TatD related DNase HPY11_00455 PF00490 Delta-aminolevulinic acid dehydratase HPY11_00465 PF01612 3'-5' exonuclease HPY11_00465 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY11_00465 PF00476 DNA polymerase family A HPY11_00465 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY11_00470 PF01926 50S ribosome-binding GTPase HPY11_00475 PF00034 Cytochrome c HPY11_00485 PF04220 Der GTPase activator (YihI) HPY11_00490 PF10675 Protein of unknown function (DUF2489) HPY11_00495 PF04055 Radical SAM superfamily HPY11_00495 PF06969 HemN C-terminal domain HPY11_00500 PF07719 Tetratricopeptide repeat HPY11_00500 PF07219 HemY protein N-terminus HPY11_00505 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HPY11_00510 PF02602 Uroporphyrinogen-III synthase HemD HPY11_00515 PF03900 Porphobilinogen deaminase, C-terminal domain HPY11_00515 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HPY11_00520 PF01295 Adenylate cyclase, class-I HPY11_00520 PF12633 Adenylate cyclase NT domain HPY11_00525 PF01491 Frataxin-like domain HPY11_00535 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY11_00535 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HPY11_00540 PF01678 Diaminopimelate epimerase HPY11_00545 PF04340 Protein of unknown function, DUF484 HPY11_00550 PF02899 Phage integrase, N-terminal SAM-like domain HPY11_00550 PF00589 Phage integrase family HPY11_00555 PF13419 Haloacid dehalogenase-like hydrolase HPY11_00560 PF10442 FIST C domain HPY11_00560 PF00990 Diguanylate cyclase, GGDEF domain HPY11_00560 PF08495 FIST N domain HPY11_00560 PF00563 EAL domain HPY11_00580 PF12146 Serine aminopeptidase, S33 HPY11_00585 PF01810 LysE type translocator HPY11_00590 PF00563 EAL domain HPY11_00590 PF08668 HDOD domain HPY11_00595 PF00210 Ferritin-like domain HPY11_00630 PF02881 SRP54-type protein, helical bundle domain HPY11_00630 PF00448 SRP54-type protein, GTPase domain HPY11_00635 PF00005 ABC transporter HPY11_00640 PF18075 FtsX extracellular domain HPY11_00645 PF04545 Sigma-70, region 4 HPY11_00645 PF04542 Sigma-70 region 2 HPY11_00645 PF00140 Sigma-70 factor, region 1.2 HPY11_00650 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY11_00650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY11_00655 PF00440 Bacterial regulatory proteins, tetR family HPY11_00700 PF06958 S-type Pyocin HPY11_00705 PF01320 Colicin immunity protein / pyocin immunity protein HPY11_00740 PF04002 RadC-like JAB domain HPY11_00775 PF05958 tRNA (Uracil-5-)-methyltransferase HPY11_00780 PF07715 TonB-dependent Receptor Plug Domain HPY11_00780 PF00593 TonB dependent receptor HPY11_00785 PF05922 Peptidase inhibitor I9 HPY11_00785 PF00082 Subtilase family HPY11_00785 PF04151 Bacterial pre-peptidase C-terminal domain HPY11_00790 PF01177 Asp/Glu/Hydantoin racemase HPY11_00855 PF00962 Adenosine/AMP deaminase HPY11_00860 PF03707 Bacterial signalling protein N terminal repeat HPY11_00860 PF13188 PAS domain HPY11_00860 PF00563 EAL domain HPY11_00860 PF00990 Diguanylate cyclase, GGDEF domain HPY11_00865 PF02954 Bacterial regulatory protein, Fis family HPY11_00865 PF00158 Sigma-54 interaction domain HPY11_00865 PF00072 Response regulator receiver domain HPY11_00870 PF00512 His Kinase A (phospho-acceptor) domain HPY11_00870 PF00989 PAS fold HPY11_00870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_00880 PF00120 Glutamine synthetase, catalytic domain HPY11_00880 PF03951 Glutamine synthetase, beta-Grasp domain HPY11_00900 PF03631 Virulence factor BrkB HPY11_00905 PF02580 D-Tyr-tRNA(Tyr) deacylase HPY11_00910 PF09500 Putative thioesterase (yiiD_Cterm) HPY11_00910 PF00583 Acetyltransferase (GNAT) family HPY11_00920 PF01293 Phosphoenolpyruvate carboxykinase HPY11_00925 PF01430 Hsp33 protein HPY11_00930 PF01479 S4 domain HPY11_00935 PF11356 Type II secretion system protein C HPY11_00940 PF00263 Bacterial type II and III secretion system protein HPY11_00940 PF03958 Bacterial type II/III secretion system short domain HPY11_00945 PF00437 Type II/IV secretion system protein HPY11_00950 PF00482 Type II secretion system (T2SS), protein F HPY11_00955 PF07963 Prokaryotic N-terminal methylation motif HPY11_00955 PF08334 Type II secretion system (T2SS), protein G HPY11_00960 PF12019 Type II transport protein GspH HPY11_00965 PF02501 Type II secretion system (T2SS), protein I HPY11_00965 PF07963 Prokaryotic N-terminal methylation motif HPY11_00970 PF07963 Prokaryotic N-terminal methylation motif HPY11_00970 PF11612 Type II secretion system (T2SS), protein J HPY11_00975 PF03934 Type II secretion system (T2SS), protein K HPY11_00980 PF12693 GspL periplasmic domain HPY11_00980 PF05134 Type II secretion system (T2SS), protein L HPY11_00985 PF04612 Type II secretion system (T2SS), protein M HPY11_00990 PF01203 Type II secretion system (T2SS), protein N HPY11_00995 PF00459 Inositol monophosphatase family HPY11_01000 PF00293 NUDIX domain HPY11_01005 PF01521 Iron-sulphur cluster biosynthesis HPY11_01005 PF01106 NifU-like domain HPY11_01010 PF00156 Phosphoribosyl transferase domain HPY11_01020 PF00561 alpha/beta hydrolase fold HPY11_01030 PF00575 S1 RNA binding domain HPY11_01030 PF16921 Tex protein YqgF-like domain HPY11_01030 PF17674 HHH domain HPY11_01030 PF09371 Tex-like protein N-terminal domain HPY11_01070 PF03449 Transcription elongation factor, N-terminal HPY11_01070 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY11_01075 PF00990 Diguanylate cyclase, GGDEF domain HPY11_01075 PF17152 Periplasmic sensor domain HPY11_01080 PF00072 Response regulator receiver domain HPY11_01080 PF00486 Transcriptional regulatory protein, C terminal HPY11_01085 PF00512 His Kinase A (phospho-acceptor) domain HPY11_01085 PF00672 HAMP domain HPY11_01085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_01090 PF00860 Permease family HPY11_01095 PF00270 DEAD/DEAH box helicase HPY11_01095 PF17191 RecG wedge domain HPY11_01095 PF00271 Helicase conserved C-terminal domain HPY11_01100 PF02824 TGS domain HPY11_01100 PF04607 Region found in RelA / SpoT proteins HPY11_01100 PF13291 ACT domain HPY11_01105 PF01192 RNA polymerase Rpb6 HPY11_01110 PF00625 Guanylate kinase HPY11_01115 PF02592 Putative vitamin uptake transporter HPY11_01120 PF00474 Sodium:solute symporter family HPY11_01130 PF02080 TrkA-C domain HPY11_01130 PF03471 Transporter associated domain HPY11_01130 PF00999 Sodium/hydrogen exchanger family HPY11_01135 PF00196 Bacterial regulatory proteins, luxR family HPY11_01135 PF00072 Response regulator receiver domain HPY11_01140 PF11412 Disulphide bond corrector protein DsbC HPY11_01140 PF02683 Cytochrome C biogenesis protein transmembrane region HPY11_01145 PF11852 Domain of unknown function (DUF3372) HPY11_01145 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY11_01145 PF17967 Pullulanase N2 domain HPY11_01145 PF18494 Pullulanase Ins domain HPY11_01145 PF03714 Bacterial pullanase-associated domain HPY11_01150 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY11_01155 PF00206 Lyase HPY11_01155 PF10415 Fumarase C C-terminus HPY11_01160 PF17158 Membrane-associated sensor, integral membrane domain HPY11_01160 PF00990 Diguanylate cyclase, GGDEF domain HPY11_01165 PF04186 FxsA cytoplasmic membrane protein HPY11_01170 PF00588 SpoU rRNA Methylase family HPY11_01175 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY11_01175 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY11_01180 PF16527 Two-component sensor protein CpxA, periplasmic domain HPY11_01180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_01180 PF00672 HAMP domain HPY11_01180 PF00512 His Kinase A (phospho-acceptor) domain HPY11_01185 PF00072 Response regulator receiver domain HPY11_01185 PF00486 Transcriptional regulatory protein, C terminal HPY11_01195 PF16916 Dimerisation domain of Zinc Transporter HPY11_01195 PF01545 Cation efflux family HPY11_01200 PF00365 Phosphofructokinase HPY11_01205 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HPY11_01210 PF06005 Cell division protein ZapB HPY11_01215 PF02219 Methylenetetrahydrofolate reductase HPY11_01220 PF03447 Homoserine dehydrogenase, NAD binding domain HPY11_01220 PF00742 Homoserine dehydrogenase HPY11_01220 PF00696 Amino acid kinase family HPY11_01225 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY11_01230 PF01340 Met Apo-repressor, MetJ HPY11_01235 PF03949 Malic enzyme, NAD binding domain HPY11_01235 PF00390 Malic enzyme, N-terminal domain HPY11_01240 PF01197 Ribosomal protein L31 HPY11_01245 PF17764 3′ DNA-binding domain (3′BD) HPY11_01245 PF18074 Primosomal protein N C-terminal domain HPY11_01245 PF00270 DEAD/DEAH box helicase HPY11_01245 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HPY11_01245 PF00271 Helicase conserved C-terminal domain HPY11_01250 PF00356 Bacterial regulatory proteins, lacI family HPY11_01255 PF05036 Sporulation related domain HPY11_01260 PF00227 Proteasome subunit HPY11_01265 PF00004 ATPase family associated with various cellular activities (AAA) HPY11_01265 PF07724 AAA domain (Cdc48 subfamily) HPY11_01265 PF10431 C-terminal, D2-small domain, of ClpB protein HPY11_01270 PF01040 UbiA prenyltransferase family HPY11_01275 PF03737 Aldolase/RraA HPY11_01280 PF01554 MatE HPY11_01285 PF00121 Triosephosphate isomerase HPY11_01305 PF00455 DeoR C terminal sensor domain HPY11_01305 PF08220 DeoR-like helix-turn-helix domain HPY11_01310 PF00166 Chaperonin 10 Kd subunit HPY11_01315 PF00118 TCP-1/cpn60 chaperonin family HPY11_01325 PF04055 Radical SAM superfamily HPY11_01330 PF01132 Elongation factor P (EF-P) OB domain HPY11_01330 PF09285 Elongation factor P, C-terminal HPY11_01330 PF08207 Elongation factor P (EF-P) KOW-like domain HPY11_01335 PF02313 Fumarate reductase subunit D HPY11_01340 PF02300 Fumarate reductase subunit C HPY11_01345 PF13183 4Fe-4S dicluster domain HPY11_01345 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY11_01350 PF02910 Fumarate reductase flavoprotein C-term HPY11_01350 PF00890 FAD binding domain HPY11_01355 PF00152 tRNA synthetases class II (D, K and N) HPY11_01360 PF00581 Rhodanese-like domain HPY11_01365 PF02556 Preprotein translocase subunit SecB HPY11_01370 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HPY11_01370 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HPY11_01375 PF06426 Serine acetyltransferase, N-terminal HPY11_01375 PF00132 Bacterial transferase hexapeptide (six repeats) HPY11_01385 PF00311 Phosphoenolpyruvate carboxylase HPY11_01390 PF01546 Peptidase family M20/M25/M40 HPY11_01390 PF07687 Peptidase dimerisation domain HPY11_01395 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY11_01395 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY11_01400 PF00696 Amino acid kinase family HPY11_01405 PF00764 Arginosuccinate synthase HPY11_01410 PF14698 Argininosuccinate lyase C-terminal HPY11_01410 PF00206 Lyase HPY11_01420 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY11_01420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY11_01425 PF08534 Redoxin HPY11_01425 PF00462 Glutaredoxin HPY11_01430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_01430 PF03466 LysR substrate binding domain HPY11_01435 PF00912 Transglycosylase HPY11_01435 PF00905 Penicillin binding protein transpeptidase domain HPY11_01435 PF17092 Penicillin-binding protein OB-like domain HPY11_01460 PF11741 AMIN domain HPY11_01460 PF03958 Bacterial type II/III secretion system short domain HPY11_01460 PF00263 Bacterial type II and III secretion system protein HPY11_01460 PF07660 Secretin and TonB N terminus short domain HPY11_01465 PF01202 Shikimate kinase HPY11_01470 PF01761 3-dehydroquinate synthase HPY11_01480 PF02086 D12 class N6 adenine-specific DNA methyltransferase HPY11_01485 PF00834 Ribulose-phosphate 3 epimerase family HPY11_01490 PF13419 Haloacid dehalogenase-like hydrolase HPY11_01495 PF00579 tRNA synthetases class I (W and Y) HPY11_01515 PF18693 TRAM domain HPY11_01515 PF00919 Uncharacterized protein family UPF0004 HPY11_01515 PF04055 Radical SAM superfamily HPY11_01520 PF00117 Glutamine amidotransferase class-I HPY11_01525 PF00202 Aminotransferase class-III HPY11_01530 PF04958 Arginine N-succinyltransferase beta subunit HPY11_01535 PF00171 Aldehyde dehydrogenase family HPY11_01545 PF00027 Cyclic nucleotide-binding domain HPY11_01545 PF13545 Crp-like helix-turn-helix domain HPY11_01550 PF00485 Phosphoribulokinase / Uridine kinase family HPY11_01555 PF06794 Uncharacterised protein family (UPF0270) HPY11_01560 PF00561 alpha/beta hydrolase fold HPY11_01570 PF00005 ABC transporter HPY11_01570 PF12848 ABC transporter HPY11_01575 PF02525 Flavodoxin-like fold HPY11_01580 PF00999 Sodium/hydrogen exchanger family HPY11_01580 PF02254 TrkA-N domain HPY11_01590 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY11_01595 PF01112 Asparaginase HPY11_01600 PF00709 Adenylosuccinate synthetase HPY11_01605 PF08238 Sel1 repeat HPY11_01610 PF11893 Domain of unknown function (DUF3413) HPY11_01610 PF00884 Sulfatase HPY11_01615 PF00575 S1 RNA binding domain HPY11_01615 PF08206 Ribonuclease B OB domain HPY11_01615 PF08461 Ribonuclease R winged-helix domain HPY11_01615 PF17876 Cold shock domain HPY11_01615 PF00773 RNB domain HPY11_01620 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY11_01620 PF00588 SpoU rRNA Methylase family HPY11_01625 PF00338 Ribosomal protein S10p/S20e HPY11_01630 PF00297 Ribosomal protein L3 HPY11_01635 PF00573 Ribosomal protein L4/L1 family HPY11_01640 PF00276 Ribosomal protein L23 HPY11_01645 PF03947 Ribosomal Proteins L2, C-terminal domain HPY11_01645 PF00181 Ribosomal Proteins L2, RNA binding domain HPY11_01650 PF00203 Ribosomal protein S19 HPY11_01655 PF00237 Ribosomal protein L22p/L17e HPY11_01660 PF00189 Ribosomal protein S3, C-terminal domain HPY11_01660 PF07650 KH domain HPY11_01665 PF00252 Ribosomal protein L16p/L10e HPY11_01670 PF00831 Ribosomal L29 protein HPY11_01675 PF00366 Ribosomal protein S17 HPY11_01680 PF00238 Ribosomal protein L14p/L23e HPY11_01685 PF00467 KOW motif HPY11_01685 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HPY11_01690 PF00673 ribosomal L5P family C-terminus HPY11_01690 PF00281 Ribosomal protein L5 HPY11_01695 PF00253 Ribosomal protein S14p/S29e HPY11_01700 PF00410 Ribosomal protein S8 HPY11_01705 PF00347 Ribosomal protein L6 HPY11_01710 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HPY11_01715 PF03719 Ribosomal protein S5, C-terminal domain HPY11_01715 PF00333 Ribosomal protein S5, N-terminal domain HPY11_01720 PF00327 Ribosomal protein L30p/L7e HPY11_01725 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HPY11_01730 PF00344 SecY translocase HPY11_01735 PF00444 Ribosomal protein L36 HPY11_01740 PF00416 Ribosomal protein S13/S18 HPY11_01745 PF00411 Ribosomal protein S11 HPY11_01750 PF00163 Ribosomal protein S4/S9 N-terminal domain HPY11_01750 PF01479 S4 domain HPY11_01755 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HPY11_01755 PF01000 RNA polymerase Rpb3/RpoA insert domain HPY11_01755 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HPY11_01760 PF01196 Ribosomal protein L17 HPY11_01770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY11_01770 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY11_01775 PF04225 Opacity-associated protein A LysM-like domain HPY11_01775 PF08525 Opacity-associated protein A N-terminal motif HPY11_01780 PF00892 EamA-like transporter family HPY11_01785 PF13673 Acetyltransferase (GNAT) domain HPY11_01790 PF03880 DbpA RNA binding domain HPY11_01790 PF00271 Helicase conserved C-terminal domain HPY11_01790 PF00270 DEAD/DEAH box helicase HPY11_01800 PF02872 5'-nucleotidase, C-terminal domain HPY11_01800 PF00149 Calcineurin-like phosphoesterase HPY11_01805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY11_01805 PF10414 Sirohaem synthase dimerisation region HPY11_01805 PF14824 Sirohaem biosynthesis protein central HPY11_01810 PF01507 Phosphoadenosine phosphosulfate reductase family HPY11_01815 PF00009 Elongation factor Tu GTP binding domain HPY11_01840 PF00005 ABC transporter HPY11_01850 PF10795 Protein of unknown function (DUF2607) HPY11_01855 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HPY11_01860 PF01625 Peptide methionine sulfoxide reductase HPY11_01865 PF17243 POTRA domain TamA domain 1 HPY11_01865 PF07244 Surface antigen variable number repeat HPY11_01865 PF01103 Surface antigen HPY11_01870 PF04357 TamB, inner membrane protein subunit of TAM complex HPY11_01875 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like HPY11_01880 PF00719 Inorganic pyrophosphatase HPY11_01885 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HPY11_01890 PF01225 Mur ligase family, catalytic domain HPY11_01890 PF08245 Mur ligase middle domain HPY11_01890 PF02875 Mur ligase family, glutamate ligase domain HPY11_01895 PF02441 Flavoprotein HPY11_01905 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_01910 PF00005 ABC transporter HPY11_01915 PF04751 Protein of unknown function (DUF615) HPY11_01920 PF01523 Putative modulator of DNA gyrase HPY11_01925 PF03448 MgtE intracellular N domain HPY11_01925 PF00571 CBS domain HPY11_01925 PF01769 Divalent cation transporter HPY11_01930 PF00381 PTS HPr component phosphorylation site HPY11_01935 PF03668 P-loop ATPase protein family HPY11_01940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY11_01945 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY11_01950 PF00309 Sigma-54 factor, Activator interacting domain (AID) HPY11_01950 PF04963 Sigma-54 factor, core binding domain HPY11_01950 PF04552 Sigma-54, DNA binding domain HPY11_01955 PF00005 ABC transporter HPY11_01955 PF12399 Branched-chain amino acid ATP-binding cassette transporter HPY11_01960 PF03968 OstA-like protein HPY11_01975 PF00571 CBS domain HPY11_01975 PF01380 SIS domain HPY11_01980 PF01699 Sodium/calcium exchanger protein HPY11_01985 PF00005 ABC transporter HPY11_01990 PF02405 Permease MlaE HPY11_01995 PF02470 MlaD protein HPY11_02000 PF05494 MlaC protein HPY11_02010 PF01722 BolA-like protein HPY11_02015 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY11_02020 PF01553 Acyltransferase HPY11_02025 PF01042 Endoribonuclease L-PSP HPY11_02030 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HPY11_02030 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HPY11_02035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY11_02035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY11_02040 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY11_02040 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY11_02045 PF13638 PIN domain HPY11_02045 PF02562 PhoH-like protein HPY11_02050 PF18339 RapA N-terminal Tudor like domain 1 HPY11_02050 PF18337 RapA N-terminal Tudor like domain HPY11_02050 PF00176 SNF2 family N-terminal domain HPY11_02050 PF12137 RNA polymerase recycling family C-terminal HPY11_02050 PF00271 Helicase conserved C-terminal domain HPY11_02055 PF00849 RNA pseudouridylate synthase HPY11_02060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY11_02060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY11_02065 PF00133 tRNA synthetases class I (I, L, M and V) HPY11_02065 PF10458 Valyl tRNA synthetase tRNA binding arm HPY11_02065 PF08264 Anticodon-binding domain of tRNA HPY11_02070 PF04364 DNA polymerase III chi subunit, HolC HPY11_02075 PF00883 Cytosol aminopeptidase family, catalytic domain HPY11_02075 PF02789 Cytosol aminopeptidase family, N-terminal domain HPY11_02080 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY11_02085 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY11_02100 PF00072 Response regulator receiver domain HPY11_02140 PF00694 Aconitase C-terminal domain HPY11_02145 PF00330 Aconitase family (aconitate hydratase) HPY11_02150 PF00180 Isocitrate/isopropylmalate dehydrogenase HPY11_02155 PF08502 LeuA allosteric (dimerisation) domain HPY11_02155 PF00682 HMGL-like HPY11_02160 PF01569 PAP2 superfamily HPY11_02170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_02170 PF03466 LysR substrate binding domain HPY11_02175 PF00501 AMP-binding enzyme HPY11_02180 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY11_02180 PF00205 Thiamine pyrophosphate enzyme, central domain HPY11_02180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY11_02185 PF10369 Small subunit of acetolactate synthase HPY11_02190 PF13006 Insertion element 4 transposase N-terminal HPY11_02190 PF01609 Transposase DDE domain HPY11_02195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY11_02195 PF01842 ACT domain HPY11_02195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY11_02200 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HPY11_02205 PF01812 5-formyltetrahydrofolate cyclo-ligase family HPY11_02215 PF05164 Cell division protein ZapA HPY11_02220 PF03695 Uncharacterised protein family (UPF0149) HPY11_02225 PF01494 FAD binding domain HPY11_02230 PF01494 FAD binding domain HPY11_02245 PF03937 Flavinator of succinate dehydrogenase HPY11_02255 PF02910 Fumarate reductase flavoprotein C-term HPY11_02255 PF00890 FAD binding domain HPY11_02260 PF04542 Sigma-70 region 2 HPY11_02260 PF08281 Sigma-70, region 4 HPY11_02265 PF03872 Anti sigma-E protein RseA, N-terminal domain HPY11_02265 PF03873 Anti sigma-E protein RseA, C-terminal domain HPY11_02270 PF17188 MucB/RseB C-terminal domain HPY11_02270 PF03888 MucB/RseB N-terminal domain HPY11_02280 PF03144 Elongation factor Tu domain 2 HPY11_02280 PF00009 Elongation factor Tu GTP binding domain HPY11_02280 PF06421 GTP-binding protein LepA C-terminus HPY11_02280 PF00679 Elongation factor G C-terminus HPY11_02285 PF10502 Signal peptidase, peptidase S26 HPY11_02290 PF14622 Ribonuclease-III-like HPY11_02290 PF00035 Double-stranded RNA binding motif HPY11_02295 PF01926 50S ribosome-binding GTPase HPY11_02295 PF07650 KH domain HPY11_02300 PF02565 Recombination protein O C terminal HPY11_02300 PF11967 Recombination protein O N terminal HPY11_02305 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HPY11_02310 PF01648 4'-phosphopantetheinyl transferase superfamily HPY11_02325 PF00990 Diguanylate cyclase, GGDEF domain HPY11_02330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_02330 PF00672 HAMP domain HPY11_02330 PF00512 His Kinase A (phospho-acceptor) domain HPY11_02330 PF01627 Hpt domain HPY11_02330 PF00072 Response regulator receiver domain HPY11_02330 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY11_02335 PF05958 tRNA (Uracil-5-)-methyltransferase HPY11_02335 PF01938 TRAM domain HPY11_02340 PF13291 ACT domain HPY11_02340 PF02824 TGS domain HPY11_02340 PF04607 Region found in RelA / SpoT proteins HPY11_02345 PF03819 MazG nucleotide pyrophosphohydrolase domain HPY11_02350 PF06418 CTP synthase N-terminus HPY11_02350 PF00117 Glutamine amidotransferase class-I HPY11_02355 PF03952 Enolase, N-terminal domain HPY11_02355 PF00113 Enolase, C-terminal TIM barrel domain HPY11_02360 PF01966 HD domain HPY11_02360 PF01743 Poly A polymerase head domain HPY11_02360 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY11_02365 PF13401 AAA domain HPY11_02365 PF01471 Putative peptidoglycan binding domain HPY11_02375 PF08239 Bacterial SH3 domain HPY11_02380 PF01384 Phosphate transporter family HPY11_02385 PF01865 Protein of unknown function DUF47 HPY11_02390 PF01928 CYTH domain HPY11_02395 PF02743 Cache domain HPY11_02395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_02395 PF00672 HAMP domain HPY11_02400 PF03710 Glutamate-ammonia ligase adenylyltransferase HPY11_02400 PF08335 GlnD PII-uridylyltransferase HPY11_02405 PF00294 pfkB family carbohydrate kinase HPY11_02405 PF01467 Cytidylyltransferase-like HPY11_02410 PF02321 Outer membrane efflux protein HPY11_02415 PF00293 NUDIX domain HPY11_02420 PF06853 Protein of unknown function (DUF1249) HPY11_02425 PF00149 Calcineurin-like phosphoesterase HPY11_02430 PF05728 Uncharacterised protein family (UPF0227) HPY11_02435 PF00204 DNA gyrase B HPY11_02435 PF00986 DNA gyrase B subunit, carboxyl terminus HPY11_02435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_02435 PF01751 Toprim domain HPY11_02440 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY11_02440 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY11_02445 PF03884 DNA gyrase inhibitor YacG HPY11_02450 PF07072 Cell division protein HPY11_02455 PF01121 Dephospho-CoA kinase HPY11_02460 PF01478 Type IV leader peptidase family HPY11_02460 PF06750 Bacterial Peptidase A24 N-terminal domain HPY11_02465 PF00482 Type II secretion system (T2SS), protein F HPY11_02470 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HPY11_02470 PF00437 Type II/IV secretion system protein HPY11_02475 PF07963 Prokaryotic N-terminal methylation motif HPY11_02475 PF00114 Pilin (bacterial filament) HPY11_02480 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HPY11_02480 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HPY11_02485 PF01510 N-acetylmuramoyl-L-alanine amidase HPY11_02490 PF00258 Flavodoxin HPY11_02495 PF02899 Phage integrase, N-terminal SAM-like domain HPY11_02495 PF00589 Phage integrase family HPY11_02500 PF10411 Disulfide bond isomerase protein N-terminus HPY11_02500 PF13098 Thioredoxin-like domain HPY11_02505 PF01368 DHH family HPY11_02505 PF17768 RecJ OB domain HPY11_02505 PF02272 DHHA1 domain HPY11_02510 PF00392 Bacterial regulatory proteins, gntR family HPY11_02510 PF07729 FCD domain HPY11_02515 PF00456 Transketolase, thiamine diphosphate binding domain HPY11_02515 PF17831 Pyruvate dehydrogenase E1 component middle domain HPY11_02520 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY11_02520 PF00364 Biotin-requiring enzyme HPY11_02520 PF02817 e3 binding domain HPY11_02525 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY11_02525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY11_02535 PF01795 MraW methylase family HPY11_02540 PF04999 Cell division protein FtsL HPY11_02545 PF03717 Penicillin-binding Protein dimerisation domain HPY11_02545 PF00905 Penicillin binding protein transpeptidase domain HPY11_02550 PF08245 Mur ligase middle domain HPY11_02550 PF01225 Mur ligase family, catalytic domain HPY11_02550 PF02875 Mur ligase family, glutamate ligase domain HPY11_02555 PF02875 Mur ligase family, glutamate ligase domain HPY11_02555 PF01225 Mur ligase family, catalytic domain HPY11_02555 PF08245 Mur ligase middle domain HPY11_02560 PF00953 Glycosyl transferase family 4 HPY11_02560 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HPY11_02565 PF02875 Mur ligase family, glutamate ligase domain HPY11_02565 PF08245 Mur ligase middle domain HPY11_02570 PF01098 Cell cycle protein HPY11_02575 PF04101 Glycosyltransferase family 28 C-terminal domain HPY11_02575 PF03033 Glycosyltransferase family 28 N-terminal domain HPY11_02580 PF08245 Mur ligase middle domain HPY11_02580 PF01225 Mur ligase family, catalytic domain HPY11_02580 PF02875 Mur ligase family, glutamate ligase domain HPY11_02585 PF08478 POTRA domain, FtsQ-type HPY11_02585 PF03799 Cell division protein FtsQ HPY11_02590 PF02491 SHS2 domain inserted in FTSA HPY11_02595 PF12327 FtsZ family, C-terminal domain HPY11_02595 PF00091 Tubulin/FtsZ family, GTPase domain HPY11_02600 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HPY11_02610 PF07517 SecA DEAD-like domain HPY11_02610 PF02810 SEC-C motif HPY11_02610 PF01043 SecA preprotein cross-linking domain HPY11_02610 PF07516 SecA Wing and Scaffold domain HPY11_02615 PF00293 NUDIX domain HPY11_02620 PF05173 Dihydrodipicolinate reductase, C-terminus HPY11_02620 PF01113 Dihydrodipicolinate reductase, N-terminus HPY11_02630 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HPY11_02630 PF00117 Glutamine amidotransferase class-I HPY11_02635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HPY11_02635 PF02142 MGS-like domain HPY11_02635 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HPY11_02650 PF01925 Sulfite exporter TauE/SafE HPY11_02655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_02655 PF03466 LysR substrate binding domain HPY11_02660 PF03458 UPF0126 domain HPY11_02665 PF01497 Periplasmic binding protein HPY11_02675 PF01048 Phosphorylase superfamily HPY11_02685 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY11_02685 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY11_02690 PF01493 GXGXG motif HPY11_02690 PF01645 Conserved region in glutamate synthase HPY11_02690 PF04898 Glutamate synthase central domain HPY11_02690 PF00310 Glutamine amidotransferases class-II HPY11_02695 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY11_02695 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY11_02700 PF04898 Glutamate synthase central domain HPY11_02700 PF00310 Glutamine amidotransferases class-II HPY11_02700 PF01493 GXGXG motif HPY11_02700 PF01645 Conserved region in glutamate synthase HPY11_02705 PF16199 Radical_SAM C-terminal domain HPY11_02705 PF04055 Radical SAM superfamily HPY11_02710 PF00360 Phytochrome region HPY11_02710 PF01590 GAF domain HPY11_02710 PF00563 EAL domain HPY11_02710 PF00990 Diguanylate cyclase, GGDEF domain HPY11_02715 PF18415 Histidine kinase receptor ArcB trans-membrane domain HPY11_02715 PF00512 His Kinase A (phospho-acceptor) domain HPY11_02715 PF01627 Hpt domain HPY11_02715 PF00072 Response regulator receiver domain HPY11_02715 PF00989 PAS fold HPY11_02715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_02720 PF00072 Response regulator receiver domain HPY11_02720 PF00486 Transcriptional regulatory protein, C terminal HPY11_02730 PF03737 Aldolase/RraA HPY11_02745 PF01842 ACT domain HPY11_02745 PF00696 Amino acid kinase family HPY11_02745 PF13840 ACT domain HPY11_02745 PF03447 Homoserine dehydrogenase, NAD binding domain HPY11_02745 PF00742 Homoserine dehydrogenase HPY11_02750 PF08544 GHMP kinases C terminal HPY11_02750 PF00288 GHMP kinases N terminal domain HPY11_02755 PF14821 Threonine synthase N terminus HPY11_02755 PF00291 Pyridoxal-phosphate dependent enzyme HPY11_02760 PF01228 Glycine radical HPY11_02765 PF01261 Xylose isomerase-like TIM barrel HPY11_02770 PF03167 Uracil DNA glycosylase superfamily HPY11_02785 PF01235 Sodium:alanine symporter family HPY11_02790 PF03883 Peroxide stress protein YaaA HPY11_02800 PF01026 TatD related DNase HPY11_02805 PF07670 Nucleoside recognition HPY11_02805 PF07662 Na+ dependent nucleoside transporter C-terminus HPY11_02805 PF01773 Na+ dependent nucleoside transporter N-terminus HPY11_02815 PF01791 DeoC/LacD family aldolase HPY11_02820 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HPY11_02820 PF02885 Glycosyl transferase family, helical bundle domain HPY11_02820 PF00591 Glycosyl transferase family, a/b domain HPY11_02825 PF01676 Metalloenzyme superfamily HPY11_02830 PF01048 Phosphorylase superfamily HPY11_02840 PF18429 Domain of unknown function (DUF5609) HPY11_02850 PF18073 Rubredoxin metal binding domain HPY11_02855 PF03144 Elongation factor Tu domain 2 HPY11_02855 PF00009 Elongation factor Tu GTP binding domain HPY11_02855 PF03764 Elongation factor G, domain IV HPY11_02855 PF14492 Elongation Factor G, domain II HPY11_02855 PF00679 Elongation factor G C-terminus HPY11_02860 PF00501 AMP-binding enzyme HPY11_02865 PF00072 Response regulator receiver domain HPY11_02875 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HPY11_02875 PF02837 Glycosyl hydrolases family 2, sugar binding domain HPY11_02875 PF00703 Glycosyl hydrolases family 2 HPY11_02875 PF16353 Domain of unknown function(DUF4981) HPY11_02875 PF02929 Beta galactosidase small chain HPY11_02880 PF00356 Bacterial regulatory proteins, lacI family HPY11_02885 PF01588 Putative tRNA binding domain HPY11_02895 PF01544 CorA-like Mg2+ transporter protein HPY11_02900 PF02080 TrkA-C domain HPY11_02900 PF18030 RimK PreATP-grasp domain HPY11_02900 PF08443 RimK-like ATP-grasp domain HPY11_02905 PF00583 Acetyltransferase (GNAT) family HPY11_02915 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HPY11_02915 PF14602 Hexapeptide repeat of succinyl-transferase HPY11_02920 PF07130 YebG protein HPY11_02935 PF17946 RecC C-terminal domain HPY11_02940 PF12705 PD-(D/E)XK nuclease superfamily HPY11_02940 PF00580 UvrD/REP helicase N-terminal domain HPY11_02940 PF13361 UvrD-like helicase C-terminal domain HPY11_02945 PF13538 UvrD-like helicase C-terminal domain HPY11_02955 PF00696 Amino acid kinase family HPY11_02955 PF00583 Acetyltransferase (GNAT) family HPY11_02965 PF06725 3D domain HPY11_02965 PF03562 MltA specific insert domain HPY11_02970 PF00899 ThiF family HPY11_02975 PF02657 Fe-S metabolism associated domain HPY11_02980 PF00266 Aminotransferase class-V HPY11_02985 PF01965 DJ-1/PfpI family HPY11_02990 PF02558 Ketopantoate reductase PanE/ApbA HPY11_02990 PF08546 Ketopantoate reductase PanE/ApbA C terminal HPY11_02995 PF03502 Nucleoside-specific channel-forming protein, Tsx HPY11_03005 PF04542 Sigma-70 region 2 HPY11_03005 PF04545 Sigma-70, region 4 HPY11_03015 PF07690 Major Facilitator Superfamily HPY11_03020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY11_03030 PF05175 Methyltransferase small domain HPY11_03035 PF01722 BolA-like protein HPY11_03045 PF03116 NQR2, RnfD, RnfE family HPY11_03050 PF04205 FMN-binding domain HPY11_03055 PF02508 Rnf-Nqr subunit, membrane protein HPY11_03060 PF02508 Rnf-Nqr subunit, membrane protein HPY11_03065 PF00970 Oxidoreductase FAD-binding domain HPY11_03065 PF00175 Oxidoreductase NAD-binding domain HPY11_03065 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY11_03070 PF02424 ApbE family HPY11_03080 PF11798 IMS family HHH motif HPY11_03080 PF00817 impB/mucB/samB family HPY11_03090 PF00990 Diguanylate cyclase, GGDEF domain HPY11_03090 PF17158 Membrane-associated sensor, integral membrane domain HPY11_03095 PF00209 Sodium:neurotransmitter symporter family HPY11_03105 PF18030 RimK PreATP-grasp domain HPY11_03105 PF08443 RimK-like ATP-grasp domain HPY11_03110 PF18030 RimK PreATP-grasp domain HPY11_03110 PF08443 RimK-like ATP-grasp domain HPY11_03115 PF07687 Peptidase dimerisation domain HPY11_03115 PF01546 Peptidase family M20/M25/M40 HPY11_03120 PF00860 Permease family HPY11_03125 PF00156 Phosphoribosyl transferase domain HPY11_03135 PF07417 Sigma factor-binding transcriptional regulator Crl HPY11_03140 PF00696 Amino acid kinase family HPY11_03140 PF01472 PUA domain HPY11_03145 PF00171 Aldehyde dehydrogenase family HPY11_03150 PF03477 ATP cone domain HPY11_03155 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY11_03155 PF01872 RibD C-terminal domain HPY11_03160 PF00677 Lumazine binding domain HPY11_03165 PF00925 GTP cyclohydrolase II HPY11_03165 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY11_03170 PF00885 6,7-dimethyl-8-ribityllumazine synthase HPY11_03175 PF01029 NusB family HPY11_03180 PF00586 AIR synthase related protein, N-terminal domain HPY11_03180 PF02769 AIR synthase related protein, C-terminal domain HPY11_03185 PF04608 Phosphatidylglycerophosphatase A HPY11_03190 PF11944 Protein of unknown function (DUF3461) HPY11_03195 PF08335 GlnD PII-uridylyltransferase HPY11_03195 PF01909 Nucleotidyltransferase domain HPY11_03195 PF01966 HD domain HPY11_03200 PF00557 Metallopeptidase family M24 HPY11_03205 PF00318 Ribosomal protein S2 HPY11_03210 PF00889 Elongation factor TS HPY11_03215 PF00696 Amino acid kinase family HPY11_03220 PF01765 Ribosome recycling factor HPY11_03225 PF01255 Putative undecaprenyl diphosphate synthase HPY11_03235 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HPY11_03235 PF13288 DXP reductoisomerase C-terminal domain HPY11_03235 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HPY11_03240 PF17820 PDZ domain HPY11_03240 PF02163 Peptidase family M50 HPY11_03245 PF01103 Surface antigen HPY11_03245 PF07244 Surface antigen variable number repeat HPY11_03250 PF03938 Outer membrane protein (OmpH-like) HPY11_03255 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HPY11_03255 PF00132 Bacterial transferase hexapeptide (six repeats) HPY11_03260 PF07977 FabA-like domain HPY11_03265 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HPY11_03265 PF00132 Bacterial transferase hexapeptide (six repeats) HPY11_03270 PF02684 Lipid-A-disaccharide synthetase HPY11_03275 PF01351 Ribonuclease HII HPY11_03280 PF14579 Helix-hairpin-helix motif HPY11_03280 PF01336 OB-fold nucleic acid binding domain HPY11_03280 PF02811 PHP domain HPY11_03280 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HPY11_03280 PF07733 Bacterial DNA polymerase III alpha NTPase domain HPY11_03285 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HPY11_03290 PF01171 PP-loop family HPY11_03290 PF11734 TilS substrate C-terminal domain HPY11_03290 PF09179 TilS substrate binding domain HPY11_03295 PF00034 Cytochrome c HPY11_03300 PF05870 Phenolic acid decarboxylase (PAD) HPY11_03305 PF00543 Nitrogen regulatory protein P-II HPY11_03310 PF03372 Endonuclease/Exonuclease/phosphatase family HPY11_03315 PF01476 LysM domain HPY11_03315 PF01464 Transglycosylase SLT domain HPY11_03320 PF16123 Hydroxyacylglutathione hydrolase C-terminus HPY11_03320 PF00753 Metallo-beta-lactamase superfamily HPY11_03325 PF08241 Methyltransferase domain HPY11_03330 PF00075 RNase H HPY11_03335 PF00929 Exonuclease HPY11_03345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY11_03345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY11_03345 PF02770 Acyl-CoA dehydrogenase, middle domain HPY11_03345 PF09317 Domain of unknown function (DUF1974) HPY11_03350 PF13580 SIS domain HPY11_03355 PF13230 Glutamine amidotransferases class-II HPY11_03360 PF00551 Formyl transferase HPY11_03365 PF00586 AIR synthase related protein, N-terminal domain HPY11_03365 PF02769 AIR synthase related protein, C-terminal domain HPY11_03375 PF00990 Diguanylate cyclase, GGDEF domain HPY11_03375 PF08448 PAS fold HPY11_03380 PF00849 RNA pseudouridylate synthase HPY11_03380 PF01479 S4 domain HPY11_03385 PF01713 Smr domain HPY11_03400 PF01963 TraB family HPY11_03405 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HPY11_03405 PF02838 Glycosyl hydrolase family 20, domain 2 HPY11_03405 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY11_03405 PF03173 Putative carbohydrate binding domain HPY11_03415 PF00403 Heavy-metal-associated domain HPY11_03420 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY11_03425 PF01389 OmpA-like transmembrane domain HPY11_03425 PF00691 OmpA family HPY11_03435 PF07715 TonB-dependent Receptor Plug Domain HPY11_03440 PF08021 Siderophore-interacting FAD-binding domain HPY11_03440 PF04954 Siderophore-interacting protein HPY11_03445 PF00501 AMP-binding enzyme HPY11_03445 PF00550 Phosphopantetheine attachment site HPY11_03445 PF00668 Condensation domain HPY11_03445 PF08242 Methyltransferase domain HPY11_03480 PF01584 CheW-like domain HPY11_03480 PF00072 Response regulator receiver domain HPY11_03485 PF01739 CheR methyltransferase, SAM binding domain HPY11_03485 PF03705 CheR methyltransferase, all-alpha domain HPY11_03490 PF00460 Flagella basal body rod protein HPY11_03495 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY11_03495 PF00460 Flagella basal body rod protein HPY11_03500 PF13861 FlgD Tudor-like domain HPY11_03500 PF13860 FlgD Ig-like domain HPY11_03500 PF03963 Flagellar hook capping protein - N-terminal region HPY11_03505 PF00460 Flagella basal body rod protein HPY11_03505 PF07559 Flagellar basal body protein FlaE HPY11_03505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY11_03510 PF00460 Flagella basal body rod protein HPY11_03510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY11_03515 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY11_03515 PF00460 Flagella basal body rod protein HPY11_03520 PF02107 Flagellar L-ring protein HPY11_03525 PF02119 Flagellar P-ring protein HPY11_03530 PF10135 Rod binding protein HPY11_03530 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HPY11_03535 PF07196 Flagellin hook IN motif HPY11_03535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY11_03545 PF00700 Bacterial flagellin C-terminal helical region HPY11_03545 PF00669 Bacterial flagellin N-terminal helical region HPY11_03545 PF07196 Flagellin hook IN motif HPY11_03550 PF00669 Bacterial flagellin N-terminal helical region HPY11_03550 PF07196 Flagellin hook IN motif HPY11_03550 PF00700 Bacterial flagellin C-terminal helical region HPY11_03635 PF01926 50S ribosome-binding GTPase HPY11_03635 PF06071 Protein of unknown function (DUF933) HPY11_03640 PF01195 Peptidyl-tRNA hydrolase HPY11_03645 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HPY11_03645 PF14572 Phosphoribosyl synthetase-associated domain HPY11_03650 PF08544 GHMP kinases C terminal HPY11_03650 PF00288 GHMP kinases N terminal domain HPY11_03655 PF03550 Outer membrane lipoprotein LolB HPY11_03660 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HPY11_03660 PF01488 Shikimate / quinate 5-dehydrogenase HPY11_03660 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HPY11_03665 PF00472 RF-1 domain HPY11_03665 PF03462 PCRF domain HPY11_03670 PF13847 Methyltransferase domain HPY11_03670 PF17827 PrmC N-terminal domain HPY11_03675 PF04247 Invasion gene expression up-regulator, SirB HPY11_03680 PF13369 Transglutaminase-like superfamily HPY11_03685 PF00793 DAHP synthetase I family HPY11_03690 PF02872 5'-nucleotidase, C-terminal domain HPY11_03690 PF00149 Calcineurin-like phosphoesterase HPY11_03695 PF04073 Aminoacyl-tRNA editing domain HPY11_03700 PF00860 Permease family HPY11_03715 PF03358 NADPH-dependent FMN reductase HPY11_03720 PF03960 ArsC family HPY11_03725 PF01435 Peptidase family M48 HPY11_03725 PF13181 Tetratricopeptide repeat HPY11_03735 PF01594 AI-2E family transporter HPY11_03740 PF00672 HAMP domain HPY11_03740 PF02743 Cache domain HPY11_03740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_03745 PF00578 AhpC/TSA family HPY11_03760 PF06804 NlpB/DapX lipoprotein HPY11_03770 PF02557 D-alanyl-D-alanine carboxypeptidase HPY11_03775 PF07687 Peptidase dimerisation domain HPY11_03775 PF01546 Peptidase family M20/M25/M40 HPY11_03780 PF03960 ArsC family HPY11_03795 PF11143 Protein of unknown function (DUF2919) HPY11_03800 PF04261 Dyp-type peroxidase family HPY11_03805 PF10282 Lactonase, 7-bladed beta-propeller HPY11_03810 PF02838 Glycosyl hydrolase family 20, domain 2 HPY11_03810 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY11_03815 PF01081 KDPG and KHG aldolase HPY11_03820 PF00294 pfkB family carbohydrate kinase HPY11_03825 PF00474 Sodium:solute symporter family HPY11_03835 PF07969 Amidohydrolase family HPY11_03845 PF01380 SIS domain HPY11_03845 PF01418 Helix-turn-helix domain, rpiR family HPY11_03845 PF02685 Glucokinase HPY11_03850 PF00700 Bacterial flagellin C-terminal helical region HPY11_03850 PF07196 Flagellin hook IN motif HPY11_03850 PF00669 Bacterial flagellin N-terminal helical region HPY11_03855 PF00669 Bacterial flagellin N-terminal helical region HPY11_03855 PF00700 Bacterial flagellin C-terminal helical region HPY11_03855 PF07196 Flagellin hook IN motif HPY11_03860 PF07196 Flagellin hook IN motif HPY11_03860 PF00669 Bacterial flagellin N-terminal helical region HPY11_03860 PF00700 Bacterial flagellin C-terminal helical region HPY11_03865 PF03646 FlaG protein HPY11_03870 PF07196 Flagellin hook IN motif HPY11_03870 PF07195 Flagellar hook-associated protein 2 C-terminus HPY11_03870 PF02465 Flagellar hook-associated protein 2 N-terminus HPY11_03880 PF02561 Flagellar protein FliS HPY11_03885 PF00158 Sigma-54 interaction domain HPY11_03885 PF02954 Bacterial regulatory protein, Fis family HPY11_03885 PF06490 Flagellar regulatory protein FleQ HPY11_03890 PF13493 Domain of unknown function (DUF4118) HPY11_03890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_03890 PF00512 His Kinase A (phospho-acceptor) domain HPY11_03890 PF00989 PAS fold HPY11_03890 PF08447 PAS fold HPY11_03890 PF13426 PAS domain HPY11_03895 PF00072 Response regulator receiver domain HPY11_03895 PF02954 Bacterial regulatory protein, Fis family HPY11_03895 PF00158 Sigma-54 interaction domain HPY11_03900 PF02049 Flagellar hook-basal body complex protein FliE HPY11_03905 PF08345 Flagellar M-ring protein C-terminal HPY11_03905 PF01514 Secretory protein of YscJ/FliF family HPY11_03910 PF01706 FliG C-terminal domain HPY11_03910 PF14841 FliG middle domain HPY11_03910 PF14842 FliG N-terminal domain HPY11_03920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY11_03920 PF18269 T3SS EscN ATPase C-terminal domain HPY11_03940 PF03748 Flagellar basal body-associated protein FliL HPY11_03945 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY11_03945 PF02154 Flagellar motor switch protein FliM HPY11_03950 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY11_03955 PF04347 Flagellar biosynthesis protein, FliO HPY11_03960 PF00813 FliP family HPY11_03965 PF01313 Bacterial export proteins, family 3 HPY11_03970 PF01311 Bacterial export proteins, family 1 HPY11_03975 PF01312 FlhB HrpN YscU SpaS Family HPY11_03980 PF01713 Smr domain HPY11_03985 PF05175 Methyltransferase small domain HPY11_03990 PF01264 Chorismate synthase HPY11_03995 PF03458 UPF0126 domain HPY11_04000 PF04315 Elongation factor P hydroxylase HPY11_04005 PF08891 YfcL protein HPY11_04010 PF03358 NADPH-dependent FMN reductase HPY11_04015 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HPY11_04015 PF01266 FAD dependent oxidoreductase HPY11_04020 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY11_04020 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY11_04025 PF11890 Domain of unknown function (DUF3410) HPY11_04025 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY11_04025 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY11_04030 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY11_04030 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY11_04035 PF01475 Ferric uptake regulator family HPY11_04045 PF03466 LysR substrate binding domain HPY11_04045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_04050 PF03788 LrgA family HPY11_04055 PF04172 LrgB-like family HPY11_04060 PF00258 Flavodoxin HPY11_04070 PF12697 Alpha/beta hydrolase family HPY11_04075 PF03925 SeqA protein C-terminal domain HPY11_04075 PF17206 SeqA protein N-terminal domain HPY11_04080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY11_04080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY11_04080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY11_04080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY11_04090 PF01784 NIF3 (NGG1p interacting factor 3) HPY11_04095 PF00285 Citrate synthase, C-terminal domain HPY11_04100 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY11_04105 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY11_04110 PF00890 FAD binding domain HPY11_04110 PF02910 Fumarate reductase flavoprotein C-term HPY11_04115 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY11_04120 PF16870 2-oxoglutarate dehydrogenase C-terminal HPY11_04120 PF00676 Dehydrogenase E1 component HPY11_04120 PF02779 Transketolase, pyrimidine binding domain HPY11_04120 PF16078 2-oxoglutarate dehydrogenase N-terminus HPY11_04125 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY11_04125 PF00364 Biotin-requiring enzyme HPY11_04125 PF02817 e3 binding domain HPY11_04130 PF08442 ATP-grasp domain HPY11_04130 PF00549 CoA-ligase HPY11_04135 PF02629 CoA binding domain HPY11_04135 PF00549 CoA-ligase HPY11_04140 PF00950 ABC 3 transport family HPY11_04145 PF00005 ABC transporter HPY11_04150 PF01297 Zinc-uptake complex component A periplasmic HPY11_04155 PF12833 Helix-turn-helix domain HPY11_04155 PF02311 AraC-like ligand binding domain HPY11_04160 PF04023 FeoA domain HPY11_04165 PF07664 Ferrous iron transport protein B C terminus HPY11_04165 PF07670 Nucleoside recognition HPY11_04165 PF02421 Ferrous iron transport protein B HPY11_04180 PF03485 Arginyl tRNA synthetase N terminal domain HPY11_04180 PF00750 tRNA synthetases class I (R) HPY11_04180 PF05746 DALR anticodon binding domain HPY11_04190 PF00675 Insulinase (Peptidase family M16) HPY11_04190 PF05193 Peptidase M16 inactive domain HPY11_04195 PF00300 Histidine phosphatase superfamily (branch 1) HPY11_04200 PF00771 FHIPEP family HPY11_04205 PF00448 SRP54-type protein, GTPase domain HPY11_04210 PF10609 NUBPL iron-transfer P-loop NTPase HPY11_04215 PF04545 Sigma-70, region 4 HPY11_04215 PF04542 Sigma-70 region 2 HPY11_04215 PF04539 Sigma-70 region 3 HPY11_04220 PF00072 Response regulator receiver domain HPY11_04225 PF04344 Chemotaxis phosphatase, CheZ HPY11_04230 PF00072 Response regulator receiver domain HPY11_04230 PF01584 CheW-like domain HPY11_04230 PF02895 Signal transducing histidine kinase, homodimeric domain HPY11_04230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_04230 PF01627 Hpt domain HPY11_04235 PF01339 CheB methylesterase HPY11_04235 PF00072 Response regulator receiver domain HPY11_04240 PF13614 AAA domain HPY11_04250 PF01584 CheW-like domain HPY11_04260 PF00005 ABC transporter HPY11_04265 PF03379 CcmB protein HPY11_04270 PF01578 Cytochrome C assembly protein HPY11_04275 PF04995 Heme exporter protein D (CcmD) HPY11_04280 PF03100 CcmE HPY11_04285 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HPY11_04285 PF01578 Cytochrome C assembly protein HPY11_04290 PF08534 Redoxin HPY11_04295 PF03918 Cytochrome C biogenesis protein HPY11_04305 PF04333 MlaA lipoprotein HPY11_04320 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY11_04320 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY11_04325 PF00462 Glutaredoxin HPY11_04330 PF01751 Toprim domain HPY11_04330 PF01131 DNA topoisomerase HPY11_04335 PF00850 Histone deacetylase domain HPY11_04350 PF00884 Sulfatase HPY11_04350 PF11893 Domain of unknown function (DUF3413) HPY11_04355 PF07208 Protein of unknown function (DUF1414) HPY11_04360 PF04245 37-kD nucleoid-associated bacterial protein HPY11_04370 PF03553 Na+/H+ antiporter family HPY11_04375 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY11_04375 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY11_04380 PF01914 MarC family integral membrane protein HPY11_04385 PF00171 Aldehyde dehydrogenase family HPY11_04385 PF00465 Iron-containing alcohol dehydrogenase HPY11_04395 PF00916 Sulfate permease family HPY11_04395 PF01740 STAS domain HPY11_04400 PF00575 S1 RNA binding domain HPY11_04400 PF10150 Ribonuclease E/G family HPY11_04400 PF12111 Polyribonucleotide phosphorylase C terminal HPY11_04405 PF00849 RNA pseudouridylate synthase HPY11_04405 PF01479 S4 domain HPY11_04410 PF02545 Maf-like protein HPY11_04415 PF02620 Large ribosomal RNA subunit accumulation protein YceD HPY11_04420 PF01783 Ribosomal L32p protein family HPY11_04425 PF02504 Fatty acid synthesis protein HPY11_04430 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY11_04430 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY11_04435 PF00698 Acyl transferase domain HPY11_04445 PF00550 Phosphopantetheine attachment site HPY11_04450 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY11_04450 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY11_04455 PF01063 Amino-transferase class IV HPY11_04460 PF02618 YceG-like family HPY11_04465 PF02223 Thymidylate kinase HPY11_04470 PF09115 DNA polymerase III, delta subunit, C terminal HPY11_04475 PF01026 TatD related DNase HPY11_04480 PF02378 Phosphotransferase system, EIIC HPY11_04480 PF00367 phosphotransferase system, EIIB HPY11_04490 PF00209 Sodium:neurotransmitter symporter family HPY11_04505 PF01734 Patatin-like phospholipase HPY11_04510 PF00224 Pyruvate kinase, barrel domain HPY11_04510 PF02887 Pyruvate kinase, alpha/beta domain HPY11_04515 PF00480 ROK family HPY11_04520 PF00072 Response regulator receiver domain HPY11_04520 PF01584 CheW-like domain HPY11_04535 PF13847 Methyltransferase domain HPY11_04545 PF01263 Aldose 1-epimerase HPY11_04550 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY11_04550 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY11_04555 PF01641 SelR domain HPY11_04565 PF07023 Protein of unknown function (DUF1315) HPY11_04570 PF00710 Asparaginase, N-terminal HPY11_04570 PF17763 Glutaminase/Asparaginase C-terminal domain HPY11_04575 PF01343 Peptidase family S49 HPY11_04580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY11_04580 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY11_04585 PF01842 ACT domain HPY11_04585 PF00551 Formyl transferase HPY11_04595 PF04851 Type III restriction enzyme, res subunit HPY11_04595 PF13307 Helicase C-terminal domain HPY11_04600 PF00814 Glycoprotease family HPY11_04615 PF00561 alpha/beta hydrolase fold HPY11_04620 PF13193 AMP-binding enzyme C-terminal domain HPY11_04620 PF00501 AMP-binding enzyme HPY11_04625 PF01612 3'-5' exonuclease HPY11_04625 PF00570 HRDC domain HPY11_04640 PF13286 Phosphohydrolase-associated domain HPY11_04640 PF01966 HD domain HPY11_04650 PF00155 Aminotransferase class I and II HPY11_04655 PF00425 chorismate binding enzyme HPY11_04660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY11_04660 PF16582 Middle domain of thiamine pyrophosphate HPY11_04660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY11_04665 PF12697 Alpha/beta hydrolase family HPY11_04670 PF00378 Enoyl-CoA hydratase/isomerase HPY11_04675 PF13378 Enolase C-terminal domain-like HPY11_04680 PF13193 AMP-binding enzyme C-terminal domain HPY11_04680 PF00501 AMP-binding enzyme HPY11_04685 PF03594 Benzoate membrane transport protein HPY11_04690 PF07690 Major Facilitator Superfamily HPY11_04710 PF04170 NlpE N-terminal domain HPY11_04715 PF03776 Septum formation topological specificity factor MinE HPY11_04720 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY11_04725 PF03775 Septum formation inhibitor MinC, C-terminal domain HPY11_04725 PF05209 Septum formation inhibitor MinC, N-terminal domain HPY11_04730 PF05166 YcgL domain HPY11_04735 PF13406 Transglycosylase SLT domain HPY11_04740 PF03466 LysR substrate binding domain HPY11_04740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_04745 PF07670 Nucleoside recognition HPY11_04745 PF07662 Na+ dependent nucleoside transporter C-terminus HPY11_04745 PF01773 Na+ dependent nucleoside transporter N-terminus HPY11_04750 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY11_04755 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY11_04755 PF01568 Molydopterin dinucleotide binding domain HPY11_04755 PF00384 Molybdopterin oxidoreductase HPY11_04765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_04765 PF03466 LysR substrate binding domain HPY11_04770 PF01494 FAD binding domain HPY11_04775 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HPY11_04785 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HPY11_04785 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HPY11_04830 PF13188 PAS domain HPY11_04830 PF00563 EAL domain HPY11_04830 PF03707 Bacterial signalling protein N terminal repeat HPY11_04830 PF00990 Diguanylate cyclase, GGDEF domain HPY11_04840 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HPY11_04845 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY11_04850 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HPY11_04855 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY11_04860 PF00158 Sigma-54 interaction domain HPY11_04860 PF02954 Bacterial regulatory protein, Fis family HPY11_04860 PF00072 Response regulator receiver domain HPY11_04865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_04865 PF00512 His Kinase A (phospho-acceptor) domain HPY11_04875 PF05697 Bacterial trigger factor protein (TF) HPY11_04875 PF05698 Bacterial trigger factor protein (TF) C-terminus HPY11_04875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY11_04880 PF00574 Clp protease HPY11_04885 PF10431 C-terminal, D2-small domain, of ClpB protein HPY11_04885 PF07724 AAA domain (Cdc48 subfamily) HPY11_04885 PF06689 ClpX C4-type zinc finger HPY11_04890 PF00004 ATPase family associated with various cellular activities (AAA) HPY11_04890 PF02190 ATP-dependent protease La (LON) substrate-binding domain HPY11_04890 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY11_04895 PF00216 Bacterial DNA-binding protein HPY11_04900 PF13145 PPIC-type PPIASE domain HPY11_04910 PF02224 Cytidylate kinase HPY11_04915 PF00575 S1 RNA binding domain HPY11_04920 PF00216 Bacterial DNA-binding protein HPY11_04925 PF06305 Lipopolysaccharide assembly protein A domain HPY11_04930 PF18073 Rubredoxin metal binding domain HPY11_04935 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY11_04940 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HPY11_04950 PF03466 LysR substrate binding domain HPY11_04950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_04960 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY11_04960 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY11_04965 PF01037 Lrp/AsnC ligand binding domain HPY11_04970 PF01580 FtsK/SpoIIIE family HPY11_04970 PF17854 FtsK alpha domain HPY11_04970 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HPY11_04970 PF09397 Ftsk gamma domain HPY11_04975 PF02600 Disulfide bond formation protein DsbB HPY11_04980 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HPY11_04985 PF00392 Bacterial regulatory proteins, gntR family HPY11_04985 PF07840 FadR C-terminal domain HPY11_04995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_04995 PF00672 HAMP domain HPY11_05000 PF01230 HIT domain HPY11_05015 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HPY11_05015 PF13036 Peptidoglycan-synthase activator LpoB HPY11_05025 PF05728 Uncharacterised protein family (UPF0227) HPY11_05030 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY11_05045 PF12563 Hemolytic toxin N terminal HPY11_05045 PF16458 Beta-prism lectin HPY11_05045 PF07968 Leukocidin/Hemolysin toxin family HPY11_05055 PF17757 UvrB interaction domain HPY11_05055 PF00271 Helicase conserved C-terminal domain HPY11_05055 PF03461 TRCF domain HPY11_05055 PF00270 DEAD/DEAH box helicase HPY11_05055 PF02559 CarD-like/TRCF domain HPY11_05065 PF12704 MacB-like periplasmic core domain HPY11_05065 PF02687 FtsX-like permease family HPY11_05070 PF00005 ABC transporter HPY11_05075 PF02687 FtsX-like permease family HPY11_05075 PF12704 MacB-like periplasmic core domain HPY11_05085 PF00753 Metallo-beta-lactamase superfamily HPY11_05085 PF13567 Domain of unknown function (DUF4131) HPY11_05085 PF03772 Competence protein HPY11_05090 PF00664 ABC transporter transmembrane region HPY11_05090 PF00005 ABC transporter HPY11_05095 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HPY11_05100 PF03966 Trm112p-like protein HPY11_05105 PF02348 Cytidylyltransferase HPY11_05110 PF04293 SpoVR like protein HPY11_05115 PF04285 Protein of unknown function (DUF444) HPY11_05120 PF06798 PrkA serine protein kinase C-terminal domain HPY11_05120 PF08298 PrkA AAA domain HPY11_05125 PF03887 YfbU domain HPY11_05135 PF04055 Radical SAM superfamily HPY11_05140 PF00672 HAMP domain HPY11_05140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_05140 PF12729 Four helix bundle sensory module for signal transduction HPY11_05150 PF02901 Pyruvate formate lyase-like HPY11_05150 PF01228 Glycine radical HPY11_05160 PF00005 ABC transporter HPY11_05165 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY11_05170 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_05175 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_05180 PF03372 Endonuclease/Exonuclease/phosphatase family HPY11_05185 PF10689 Protein of unknown function (DUF2496) HPY11_05190 PF07445 Primosomal replication protein priC HPY11_05195 PF01925 Sulfite exporter TauE/SafE HPY11_05200 PF06733 DEAD_2 HPY11_05200 PF13307 Helicase C-terminal domain HPY11_05210 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY11_05215 PF02810 SEC-C motif HPY11_05220 PF08668 HDOD domain HPY11_05220 PF00563 EAL domain HPY11_05225 PF00149 Calcineurin-like phosphoesterase HPY11_05230 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY11_05235 PF09190 DALR domain HPY11_05235 PF01406 tRNA synthetases class I (C) catalytic domain HPY11_05240 PF02075 Crossover junction endodeoxyribonuclease RuvC HPY11_05245 PF07499 RuvA, C-terminal domain HPY11_05245 PF01330 RuvA N terminal domain HPY11_05250 PF05491 RuvB C-terminal winged helix domain HPY11_05250 PF17864 RuvB AAA lid domain HPY11_05250 PF05496 Holliday junction DNA helicase RuvB P-loop domain HPY11_05255 PF01654 Cytochrome bd terminal oxidase subunit I HPY11_05260 PF02322 Cytochrome bd terminal oxidase subunit II HPY11_05265 PF08173 Membrane bound YbgT-like protein HPY11_05270 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HPY11_05275 PF03061 Thioesterase superfamily HPY11_05280 PF01618 MotA/TolQ/ExbB proton channel family HPY11_05285 PF02472 Biopolymer transport protein ExbD/TolR HPY11_05295 PF07676 WD40-like Beta Propeller Repeat HPY11_05295 PF04052 TolB amino-terminal domain HPY11_05300 PF00691 OmpA family HPY11_05310 PF02445 Quinolinate synthetase A protein HPY11_05320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_05320 PF00512 His Kinase A (phospho-acceptor) domain HPY11_05320 PF09308 LuxQ, periplasmic HPY11_05320 PF00072 Response regulator receiver domain HPY11_05325 PF06610 L-alanine exporter HPY11_05330 PF01238 Phosphomannose isomerase type I HPY11_05335 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY11_05335 PF02378 Phosphotransferase system, EIIC HPY11_05335 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY11_05340 PF12833 Helix-turn-helix domain HPY11_05350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY11_05370 PF00171 Aldehyde dehydrogenase family HPY11_05375 PF00158 Sigma-54 interaction domain HPY11_05375 PF02954 Bacterial regulatory protein, Fis family HPY11_05375 PF01590 GAF domain HPY11_05380 PF09905 DNA-binding protein VF530 HPY11_05390 PF00875 DNA photolyase HPY11_05390 PF03441 FAD binding domain of DNA photolyase HPY11_05420 PF00873 AcrB/AcrD/AcrF family HPY11_05425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY11_05435 PF02470 MlaD protein HPY11_05440 PF04403 Paraquat-inducible protein A HPY11_05445 PF00924 Mechanosensitive ion channel HPY11_05445 PF05552 Conserved TM helix HPY11_05465 PF00440 Bacterial regulatory proteins, tetR family HPY11_05465 PF08362 YcdC-like protein, C-terminal region HPY11_05470 PF00171 Aldehyde dehydrogenase family HPY11_05475 PF07383 Protein of unknown function (DUF1496) HPY11_05485 PF00440 Bacterial regulatory proteins, tetR family HPY11_05485 PF16295 Tetracyclin repressor-like, C-terminal domain HPY11_05490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY11_05490 PF09317 Domain of unknown function (DUF1974) HPY11_05490 PF02770 Acyl-CoA dehydrogenase, middle domain HPY11_05490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY11_05495 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY11_05495 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY11_05495 PF07055 Enoyl reductase FAD binding domain HPY11_05500 PF01176 Translation initiation factor 1A / IF-1 HPY11_05505 PF04376 Arginine-tRNA-protein transferase, N terminus HPY11_05505 PF04377 Arginine-tRNA-protein transferase, C terminus HPY11_05510 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HPY11_05515 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY11_05520 PF10692 Protein of unknown function (DUF2498) HPY11_05525 PF01131 DNA topoisomerase HPY11_05525 PF01751 Toprim domain HPY11_05525 PF01396 Topoisomerase DNA binding C4 zinc finger HPY11_05525 PF08272 Topoisomerase I zinc-ribbon-like HPY11_05530 PF00483 Nucleotidyl transferase HPY11_05535 PF00534 Glycosyl transferases group 1 HPY11_05535 PF08323 Starch synthase catalytic domain HPY11_05555 PF04993 TfoX N-terminal domain HPY11_05555 PF04994 TfoX C-terminal domain HPY11_05560 PF00356 Bacterial regulatory proteins, lacI family HPY11_05565 PF02613 Nitrate reductase delta subunit HPY11_05570 PF00072 Response regulator receiver domain HPY11_05570 PF00486 Transcriptional regulatory protein, C terminal HPY11_05575 PF02698 DUF218 domain HPY11_05580 PF13847 Methyltransferase domain HPY11_05585 PF17193 MukF C-terminal domain HPY11_05585 PF17192 MukF middle domain HPY11_05585 PF03882 MukF winged-helix domain HPY11_05590 PF04288 MukE-like family HPY11_05595 PF04310 MukB N-terminal HPY11_05595 PF16330 MukB hinge domain HPY11_05600 PF01037 Lrp/AsnC ligand binding domain HPY11_05605 PF01810 LysE type translocator HPY11_05610 PF08497 Radical SAM N-terminal HPY11_05610 PF04055 Radical SAM superfamily HPY11_05610 PF11842 Domain of unknown function (DUF3362) HPY11_05615 PF08448 PAS fold HPY11_05615 PF08447 PAS fold HPY11_05615 PF00990 Diguanylate cyclase, GGDEF domain HPY11_05615 PF00563 EAL domain HPY11_05620 PF00675 Insulinase (Peptidase family M16) HPY11_05620 PF05193 Peptidase M16 inactive domain HPY11_05635 PF03466 LysR substrate binding domain HPY11_05635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_05640 PF01717 Cobalamin-independent synthase, Catalytic domain HPY11_05640 PF08267 Cobalamin-independent synthase, N-terminal domain HPY11_05650 PF03795 YCII-related domain HPY11_05655 PF03061 Thioesterase superfamily HPY11_05660 PF04279 Intracellular septation protein A HPY11_05670 PF02698 DUF218 domain HPY11_05675 PF01370 NAD dependent epimerase/dehydratase family HPY11_05685 PF01226 Formate/nitrite transporter HPY11_05690 PF06796 Periplasmic nitrate reductase protein NapE HPY11_05695 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY11_05700 PF00384 Molybdopterin oxidoreductase HPY11_05700 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY11_05700 PF01568 Molydopterin dinucleotide binding domain HPY11_05720 PF01368 DHH family HPY11_05720 PF02833 DHHA2 domain HPY11_05740 PF00005 ABC transporter HPY11_05745 PF00005 ABC transporter HPY11_05745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY11_05750 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_05750 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY11_05755 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_05760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY11_05765 PF00158 Sigma-54 interaction domain HPY11_05765 PF02954 Bacterial regulatory protein, Fis family HPY11_05770 PF04012 PspA/IM30 family HPY11_05785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY11_05785 PF00529 HlyD membrane-fusion protein of T1SS HPY11_05790 PF13533 Biotin-lipoyl like HPY11_05795 PF00873 AcrB/AcrD/AcrF family HPY11_05800 PF03352 Methyladenine glycosylase HPY11_05805 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY11_05810 PF13091 PLD-like domain HPY11_05810 PF13396 Phospholipase_D-nuclease N-terminal HPY11_05815 PF00209 Sodium:neurotransmitter symporter family HPY11_05820 PF00195 Chalcone and stilbene synthases, N-terminal domain HPY11_05820 PF02797 Chalcone and stilbene synthases, C-terminal domain HPY11_05825 PF11647 Membrane Localization Domain HPY11_05840 PF00849 RNA pseudouridylate synthase HPY11_05845 PF01066 CDP-alcohol phosphatidyltransferase HPY11_05850 PF00005 ABC transporter HPY11_05855 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_05860 PF13416 Bacterial extracellular solute-binding protein HPY11_05870 PF06945 Protein of unknown function (DUF1289) HPY11_05880 PF03222 Tryptophan/tyrosine permease family HPY11_05890 PF03448 MgtE intracellular N domain HPY11_05890 PF01769 Divalent cation transporter HPY11_05890 PF00571 CBS domain HPY11_05895 PF09308 LuxQ, periplasmic HPY11_05895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_05895 PF00072 Response regulator receiver domain HPY11_05895 PF00512 His Kinase A (phospho-acceptor) domain HPY11_05900 PF03707 Bacterial signalling protein N terminal repeat HPY11_05900 PF00990 Diguanylate cyclase, GGDEF domain HPY11_05900 PF00563 EAL domain HPY11_05910 PF04151 Bacterial pre-peptidase C-terminal domain HPY11_05910 PF08453 Peptidase family M9 N-terminal HPY11_05910 PF01752 Collagenase HPY11_05920 PF12793 Sugar transport-related sRNA regulator N-term HPY11_05920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY11_05935 PF09102 Exotoxin A, targeting HPY11_05935 PF09009 Exotoxin A catalytic HPY11_05935 PF09101 Exotoxin A binding HPY11_05945 PF12729 Four helix bundle sensory module for signal transduction HPY11_05945 PF00672 HAMP domain HPY11_05945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_05955 PF00563 EAL domain HPY11_05955 PF00990 Diguanylate cyclase, GGDEF domain HPY11_05955 PF00360 Phytochrome region HPY11_05955 PF01590 GAF domain HPY11_05960 PF01386 Ribosomal L25p family HPY11_05970 PF00072 Response regulator receiver domain HPY11_05970 PF00486 Transcriptional regulatory protein, C terminal HPY11_05980 PF04851 Type III restriction enzyme, res subunit HPY11_05980 PF00271 Helicase conserved C-terminal domain HPY11_05985 PF00849 RNA pseudouridylate synthase HPY11_05985 PF01479 S4 domain HPY11_05990 PF07690 Major Facilitator Superfamily HPY11_06000 PF11066 Protein of unknown function (DUF2867) HPY11_06000 PF13460 NAD(P)H-binding HPY11_06005 PF01554 MatE HPY11_06010 PF00005 ABC transporter HPY11_06025 PF06965 Na+/H+ antiporter 1 HPY11_06030 PF00202 Aminotransferase class-III HPY11_06035 PF16653 Saccharopine dehydrogenase C-terminal domain HPY11_06035 PF03435 Saccharopine dehydrogenase NADP binding domain HPY11_06045 PF05736 OprF membrane domain HPY11_06045 PF00691 OmpA family HPY11_06050 PF02321 Outer membrane efflux protein HPY11_06110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_06110 PF03466 LysR substrate binding domain HPY11_06120 PF01863 Protein of unknown function DUF45 HPY11_06125 PF05971 RNA methyltransferase HPY11_06140 PF04204 Homoserine O-succinyltransferase HPY11_06160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY11_06175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_06175 PF00989 PAS fold HPY11_06175 PF17203 Single cache domain 3 HPY11_06175 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HPY11_06180 PF00072 Response regulator receiver domain HPY11_06180 PF12431 Transcriptional regulator HPY11_06190 PF00072 Response regulator receiver domain HPY11_06190 PF01584 CheW-like domain HPY11_06210 PF00990 Diguanylate cyclase, GGDEF domain HPY11_06210 PF00072 Response regulator receiver domain HPY11_06235 PF07690 Major Facilitator Superfamily HPY11_06240 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HPY11_06240 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HPY11_06245 PF10509 Galactokinase galactose-binding signature HPY11_06245 PF08544 GHMP kinases C terminal HPY11_06245 PF00288 GHMP kinases N terminal domain HPY11_06250 PF01263 Aldose 1-epimerase HPY11_06260 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY11_06260 PF00205 Thiamine pyrophosphate enzyme, central domain HPY11_06260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY11_06265 PF03306 Alpha-acetolactate decarboxylase HPY11_06270 PF03466 LysR substrate binding domain HPY11_06270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_06275 PF17291 N-terminal domain of M60-like peptidases HPY11_06275 PF13402 Peptidase M60, enhancin and enhancin-like HPY11_06275 PF13322 Domain of unknown function (DUF4092) HPY11_06285 PF06628 Catalase-related immune-responsive HPY11_06285 PF00199 Catalase HPY11_06295 PF00080 Copper/zinc superoxide dismutase (SODC) HPY11_06300 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) HPY11_06305 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY11_06305 PF00361 Proton-conducting membrane transporter HPY11_06310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_06310 PF03466 LysR substrate binding domain HPY11_06315 PF13193 AMP-binding enzyme C-terminal domain HPY11_06315 PF00501 AMP-binding enzyme HPY11_06345 PF10415 Fumarase C C-terminus HPY11_06345 PF00206 Lyase HPY11_06355 PF01654 Cytochrome bd terminal oxidase subunit I HPY11_06360 PF02322 Cytochrome bd terminal oxidase subunit II HPY11_06365 PF12704 MacB-like periplasmic core domain HPY11_06365 PF02687 FtsX-like permease family HPY11_06365 PF00005 ABC transporter HPY11_06370 PF02687 FtsX-like permease family HPY11_06370 PF12704 MacB-like periplasmic core domain HPY11_06370 PF00005 ABC transporter HPY11_06375 PF12704 MacB-like periplasmic core domain HPY11_06375 PF02687 FtsX-like permease family HPY11_06375 PF00005 ABC transporter HPY11_06385 PF00529 HlyD membrane-fusion protein of T1SS HPY11_06395 PF03466 LysR substrate binding domain HPY11_06395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_06425 PF01593 Flavin containing amine oxidoreductase HPY11_06435 PF00175 Oxidoreductase NAD-binding domain HPY11_06440 PF04443 Acyl-protein synthetase, LuxE HPY11_06445 PF00296 Luciferase-like monooxygenase HPY11_06450 PF00296 Luciferase-like monooxygenase HPY11_06455 PF02273 Acyl transferase HPY11_06460 PF05893 Acyl-CoA reductase (LuxC) HPY11_06465 PF09297 NADH pyrophosphatase zinc ribbon domain HPY11_06465 PF00293 NUDIX domain HPY11_06470 PF00709 Adenylosuccinate synthetase HPY11_06485 PF00977 Histidine biosynthesis protein HPY11_06490 PF00141 Peroxidase HPY11_06495 PF00232 Glycosyl hydrolase family 1 HPY11_06500 PF00356 Bacterial regulatory proteins, lacI family HPY11_06505 PF01042 Endoribonuclease L-PSP HPY11_06510 PF04074 YhcH/YjgK/YiaL HPY11_06515 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY11_06520 PF08220 DeoR-like helix-turn-helix domain HPY11_06520 PF00455 DeoR C terminal sensor domain HPY11_06525 PF00005 ABC transporter HPY11_06525 PF17912 MalK OB fold domain HPY11_06530 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_06535 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_06540 PF13416 Bacterial extracellular solute-binding protein HPY11_06550 PF01618 MotA/TolQ/ExbB proton channel family HPY11_06555 PF01618 MotA/TolQ/ExbB proton channel family HPY11_06560 PF02472 Biopolymer transport protein ExbD/TolR HPY11_06565 PF03544 Gram-negative bacterial TonB protein C-terminal HPY11_06575 PF01068 ATP dependent DNA ligase domain HPY11_06575 PF14743 DNA ligase OB-like domain HPY11_06585 PF01554 MatE HPY11_06595 PF03881 Fructosamine kinase HPY11_06605 PF00877 NlpC/P60 family HPY11_06610 PF12729 Four helix bundle sensory module for signal transduction HPY11_06610 PF00672 HAMP domain HPY11_06610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_06625 PF00480 ROK family HPY11_06635 PF03453 MoeA N-terminal region (domain I and II) HPY11_06635 PF03454 MoeA C-terminal region (domain IV) HPY11_06635 PF00994 Probable molybdopterin binding domain HPY11_06640 PF12804 MobA-like NTP transferase domain HPY11_06645 PF00005 ABC transporter HPY11_06645 PF08402 TOBE domain HPY11_06650 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_06655 PF12849 PBP superfamily domain HPY11_06660 PF00158 Sigma-54 interaction domain HPY11_06660 PF02954 Bacterial regulatory protein, Fis family HPY11_06660 PF00072 Response regulator receiver domain HPY11_06665 PF00989 PAS fold HPY11_06665 PF00512 His Kinase A (phospho-acceptor) domain HPY11_06665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_06670 PF00005 ABC transporter HPY11_06670 PF12848 ABC transporter HPY11_06680 PF02634 FdhD/NarQ family HPY11_06700 PF02613 Nitrate reductase delta subunit HPY11_06710 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY11_06710 PF00384 Molybdopterin oxidoreductase HPY11_06710 PF01568 Molydopterin dinucleotide binding domain HPY11_06715 PF13247 4Fe-4S dicluster domain HPY11_06730 PF02146 Sir2 family HPY11_06735 PF04461 Protein of unknown function (DUF520) HPY11_06740 PF00793 DAHP synthetase I family HPY11_06755 PF13509 S1 domain HPY11_06755 PF17783 CvfB-like winged helix domain HPY11_06760 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HPY11_06760 PF01189 16S rRNA methyltransferase RsmB/F HPY11_06760 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HPY11_06765 PF02470 MlaD protein HPY11_06770 PF04403 Paraquat-inducible protein A HPY11_06775 PF00664 ABC transporter transmembrane region HPY11_06775 PF00005 ABC transporter HPY11_06780 PF13185 GAF domain HPY11_06785 PF04352 ProQ/FINO family HPY11_06785 PF17516 ProQ C-terminal domain HPY11_06790 PF11818 C-terminal domain of tail specific protease (DUF3340) HPY11_06790 PF17804 Tail specific protease N-terminal domain HPY11_06790 PF03572 Peptidase family S41 HPY11_06790 PF00595 PDZ domain HPY11_06800 PF01433 Peptidase family M1 domain HPY11_06800 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HPY11_06800 PF11940 Domain of unknown function (DUF3458) Ig-like fold HPY11_06810 PF05088 Bacterial NAD-glutamate dehydrogenase HPY11_06815 PF01180 Dihydroorotate dehydrogenase HPY11_06820 PF07126 Cell-division protein ZapC HPY11_06825 PF02926 THUMP domain HPY11_06825 PF10672 S-adenosylmethionine-dependent methyltransferase HPY11_06825 PF01170 Putative RNA methylase family UPF0020 HPY11_06845 PF04957 Ribosome modulation factor HPY11_06850 PF07977 FabA-like domain HPY11_06855 PF13654 AAA domain HPY11_06855 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY11_06860 PF17414 MatP C-terminal ribbon-helix-helix domain HPY11_06860 PF06303 MatP N-terminal domain HPY11_06935 PF02794 RTX toxin acyltransferase family HPY11_06945 PF03412 Peptidase C39 family HPY11_06945 PF00005 ABC transporter HPY11_06945 PF00664 ABC transporter transmembrane region HPY11_06955 PF00005 ABC transporter HPY11_06955 PF03412 Peptidase C39 family HPY11_06955 PF00664 ABC transporter transmembrane region HPY11_06960 PF00072 Response regulator receiver domain HPY11_06960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_06960 PF09308 LuxQ, periplasmic HPY11_06960 PF00512 His Kinase A (phospho-acceptor) domain HPY11_06975 PF00115 Cytochrome C and Quinol oxidase polypeptide I HPY11_06990 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY11_06990 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HPY11_07000 PF00403 Heavy-metal-associated domain HPY11_07015 PF13545 Crp-like helix-turn-helix domain HPY11_07015 PF00027 Cyclic nucleotide-binding domain HPY11_07020 PF00582 Universal stress protein family HPY11_07025 PF01171 PP-loop family HPY11_07045 PF00005 ABC transporter HPY11_07045 PF08402 TOBE domain HPY11_07050 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_07055 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_07060 PF13416 Bacterial extracellular solute-binding protein HPY11_07065 PF13416 Bacterial extracellular solute-binding protein HPY11_07080 PF01235 Sodium:alanine symporter family HPY11_07085 PF01810 LysE type translocator HPY11_07115 PF04717 Type VI secretion system, phage-baseplate injector HPY11_07115 PF16671 Actin cross-linking domain HPY11_07120 PF05638 Type VI secretion system effector, Hcp HPY11_07125 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HPY11_07130 PF08028 Acyl-CoA dehydrogenase, C-terminal domain HPY11_07140 PF00171 Aldehyde dehydrogenase family HPY11_07145 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HPY11_07160 PF00171 Aldehyde dehydrogenase family HPY11_07165 PF01557 Fumarylacetoacetate (FAA) hydrolase family HPY11_07170 PF01557 Fumarylacetoacetate (FAA) hydrolase family HPY11_07175 PF03328 HpcH/HpaI aldolase/citrate lyase family HPY11_07180 PF01557 Fumarylacetoacetate (FAA) hydrolase family HPY11_07195 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY11_07200 PF01047 MarR family HPY11_07205 PF01613 Flavin reductase like domain HPY11_07215 PF00171 Aldehyde dehydrogenase family HPY11_07230 PF03401 Tripartite tricarboxylate transporter family receptor HPY11_07235 PF00582 Universal stress protein family HPY11_07240 PF01266 FAD dependent oxidoreductase HPY11_07250 PF02423 Ornithine cyclodeaminase/mu-crystallin family HPY11_07260 PF00270 DEAD/DEAH box helicase HPY11_07260 PF00271 Helicase conserved C-terminal domain HPY11_07265 PF00893 Small Multidrug Resistance protein HPY11_07270 PF07690 Major Facilitator Superfamily HPY11_07275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_07275 PF03466 LysR substrate binding domain HPY11_07285 PF01979 Amidohydrolase family HPY11_07290 PF10437 Bacterial lipoate protein ligase C-terminus HPY11_07290 PF03099 Biotin/lipoate A/B protein ligase family HPY11_07295 PF00012 Hsp70 protein HPY11_07305 PF11898 Domain of unknown function (DUF3418) HPY11_07305 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HPY11_07305 PF04408 Helicase associated domain (HA2) HPY11_07305 PF00270 DEAD/DEAH box helicase HPY11_07305 PF00271 Helicase conserved C-terminal domain HPY11_07325 PF00990 Diguanylate cyclase, GGDEF domain HPY11_07325 PF03707 Bacterial signalling protein N terminal repeat HPY11_07325 PF00563 EAL domain HPY11_07335 PF00012 Hsp70 protein HPY11_07340 PF00012 Hsp70 protein HPY11_07345 PF17158 Membrane-associated sensor, integral membrane domain HPY11_07345 PF00990 Diguanylate cyclase, GGDEF domain HPY11_07355 PF00990 Diguanylate cyclase, GGDEF domain HPY11_07355 PF03707 Bacterial signalling protein N terminal repeat HPY11_07355 PF00563 EAL domain HPY11_07375 PF06508 Queuosine biosynthesis protein QueC HPY11_07380 PF04055 Radical SAM superfamily HPY11_07390 PF10414 Sirohaem synthase dimerisation region HPY11_07390 PF14824 Sirohaem biosynthesis protein central HPY11_07390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY11_07395 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY11_07400 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_07405 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_07410 PF00005 ABC transporter HPY11_07415 PF01027 Inhibitor of apoptosis-promoting Bax1 HPY11_07420 PF04358 DsrC like protein HPY11_07425 PF00708 Acylphosphatase HPY11_07435 PF00990 Diguanylate cyclase, GGDEF domain HPY11_07440 PF08534 Redoxin HPY11_07440 PF00462 Glutaredoxin HPY11_07445 PF00512 His Kinase A (phospho-acceptor) domain HPY11_07445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_07445 PF01627 Hpt domain HPY11_07445 PF00672 HAMP domain HPY11_07445 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY11_07445 PF00072 Response regulator receiver domain HPY11_07450 PF00072 Response regulator receiver domain HPY11_07455 PF02798 Glutathione S-transferase, N-terminal domain HPY11_07455 PF14497 Glutathione S-transferase, C-terminal domain HPY11_07465 PF04209 homogentisate 1,2-dioxygenase HPY11_07470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY11_07475 PF07687 Peptidase dimerisation domain HPY11_07475 PF01546 Peptidase family M20/M25/M40 HPY11_07490 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY11_07490 PF13193 AMP-binding enzyme C-terminal domain HPY11_07490 PF00501 AMP-binding enzyme HPY11_07495 PF04303 PrpF protein HPY11_07500 PF00330 Aconitase family (aconitate hydratase) HPY11_07500 PF00694 Aconitase C-terminal domain HPY11_07505 PF00285 Citrate synthase, C-terminal domain HPY11_07515 PF07729 FCD domain HPY11_07515 PF00392 Bacterial regulatory proteins, gntR family HPY11_07530 PF01970 Tripartite tricarboxylate transporter TctA family HPY11_07535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_07535 PF03466 LysR substrate binding domain HPY11_07540 PF00593 TonB dependent receptor HPY11_07540 PF07715 TonB-dependent Receptor Plug Domain HPY11_07565 PF00529 HlyD membrane-fusion protein of T1SS HPY11_07565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY11_07580 PF02653 Branched-chain amino acid transport system / permease component HPY11_07585 PF00005 ABC transporter HPY11_07590 PF13407 Periplasmic binding protein domain HPY11_07610 PF00486 Transcriptional regulatory protein, C terminal HPY11_07610 PF00072 Response regulator receiver domain HPY11_07615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_07615 PF00672 HAMP domain HPY11_07615 PF00512 His Kinase A (phospho-acceptor) domain HPY11_07620 PF06629 MltA-interacting protein MipA HPY11_07625 PF04393 Protein of unknown function (DUF535) HPY11_07630 PF00158 Sigma-54 interaction domain HPY11_07630 PF00072 Response regulator receiver domain HPY11_07630 PF02954 Bacterial regulatory protein, Fis family HPY11_07635 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY11_07635 PF00512 His Kinase A (phospho-acceptor) domain HPY11_07635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_07640 PF00939 Sodium:sulfate symporter transmembrane region HPY11_07645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_07645 PF00672 HAMP domain HPY11_07650 PF01168 Alanine racemase, N-terminal domain HPY11_07650 PF00842 Alanine racemase, C-terminal domain HPY11_07655 PF00892 EamA-like transporter family HPY11_07665 PF13302 Acetyltransferase (GNAT) domain HPY11_07670 PF00158 Sigma-54 interaction domain HPY11_07670 PF18024 Helix-turn-helix domain HPY11_07675 PF05128 Domain of unknown function (DUF697) HPY11_07680 PF04317 YcjX-like family, DUF463 HPY11_07695 PF04715 Anthranilate synthase component I, N terminal region HPY11_07695 PF00425 chorismate binding enzyme HPY11_07700 PF00293 NUDIX domain HPY11_07705 PF03222 Tryptophan/tyrosine permease family HPY11_07710 PF03315 Serine dehydratase beta chain HPY11_07710 PF03313 Serine dehydratase alpha chain HPY11_07715 PF01242 6-pyruvoyl tetrahydropterin synthase HPY11_07720 PF12729 Four helix bundle sensory module for signal transduction HPY11_07720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_07720 PF00672 HAMP domain HPY11_07725 PF01336 OB-fold nucleic acid binding domain HPY11_07725 PF00152 tRNA synthetases class II (D, K and N) HPY11_07730 PF08543 Phosphomethylpyrimidine kinase HPY11_07735 PF01966 HD domain HPY11_07735 PF00672 HAMP domain HPY11_07740 PF00155 Aminotransferase class I and II HPY11_07755 PF00672 HAMP domain HPY11_07755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_07755 PF17200 Single Cache domain 2 HPY11_07760 PF04349 Periplasmic glucan biosynthesis protein, MdoG HPY11_07765 PF13506 Glycosyl transferase family 21 HPY11_07770 PF02028 BCCT, betaine/carnitine/choline family transporter HPY11_07775 PF01047 MarR family HPY11_07780 PF00072 Response regulator receiver domain HPY11_07780 PF00196 Bacterial regulatory proteins, luxR family HPY11_07785 PF17200 Single Cache domain 2 HPY11_07785 PF07730 Histidine kinase HPY11_07790 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY11_07800 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY11_07815 PF00753 Metallo-beta-lactamase superfamily HPY11_07820 PF05951 Bacterial protein of unknown function (DUF882) HPY11_07850 PF00925 GTP cyclohydrolase II HPY11_07860 PF07690 Major Facilitator Superfamily HPY11_07875 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY11_07875 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY11_07885 PF02867 Ribonucleotide reductase, barrel domain HPY11_07885 PF03477 ATP cone domain HPY11_07885 PF00317 Ribonucleotide reductase, all-alpha domain HPY11_07890 PF00268 Ribonucleotide reductase, small chain HPY11_07895 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY11_07895 PF00175 Oxidoreductase NAD-binding domain HPY11_07895 PF00970 Oxidoreductase FAD-binding domain HPY11_07905 PF00994 Probable molybdopterin binding domain HPY11_07920 PF17200 Single Cache domain 2 HPY11_07920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_07920 PF00672 HAMP domain HPY11_07935 PF00005 ABC transporter HPY11_07940 PF01032 FecCD transport family HPY11_07945 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HPY11_07955 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HPY11_07960 PF02654 Cobalamin-5-phosphate synthase HPY11_07965 PF02277 Phosphoribosyltransferase HPY11_07970 PF01641 SelR domain HPY11_07980 PF08411 Exonuclease C-terminal HPY11_07980 PF00929 Exonuclease HPY11_07985 PF03788 LrgA family HPY11_07990 PF04172 LrgB-like family HPY11_07995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY11_07995 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HPY11_08005 PF02222 ATP-grasp domain HPY11_08010 PF05724 Thiopurine S-methyltransferase (TPMT) HPY11_08020 PF00216 Bacterial DNA-binding protein HPY11_08025 PF03483 B3/4 domain HPY11_08025 PF03484 tRNA synthetase B5 domain HPY11_08025 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HPY11_08025 PF01588 Putative tRNA binding domain HPY11_08025 PF03147 Ferredoxin-fold anticodon binding domain HPY11_08030 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HPY11_08030 PF01409 tRNA synthetases class II core domain (F) HPY11_08040 PF00990 Diguanylate cyclase, GGDEF domain HPY11_08040 PF00072 Response regulator receiver domain HPY11_08065 PF01066 CDP-alcohol phosphatidyltransferase HPY11_08070 PF02151 UvrB/uvrC motif HPY11_08070 PF08459 UvrC Helix-hairpin-helix N-terminal HPY11_08070 PF01541 GIY-YIG catalytic domain HPY11_08075 PF00196 Bacterial regulatory proteins, luxR family HPY11_08075 PF00072 Response regulator receiver domain HPY11_08080 PF00136 DNA polymerase family B HPY11_08080 PF03104 DNA polymerase family B, exonuclease domain HPY11_08095 PF08207 Elongation factor P (EF-P) KOW-like domain HPY11_08095 PF01132 Elongation factor P (EF-P) OB domain HPY11_08095 PF09285 Elongation factor P, C-terminal HPY11_08100 PF04269 Protein of unknown function, DUF440 HPY11_08110 PF00392 Bacterial regulatory proteins, gntR family HPY11_08110 PF07702 UTRA domain HPY11_08115 PF01979 Amidohydrolase family HPY11_08120 PF00491 Arginase family HPY11_08125 PF17391 Urocanase N-terminal domain HPY11_08125 PF17392 Urocanase C-terminal domain HPY11_08125 PF01175 Urocanase Rossmann-like domain HPY11_08130 PF00221 Aromatic amino acid lyase HPY11_08140 PF00089 Trypsin HPY11_08145 PF04191 Phospholipid methyltransferase HPY11_08150 PF13183 4Fe-4S dicluster domain HPY11_08150 PF01565 FAD binding domain HPY11_08150 PF02913 FAD linked oxidases, C-terminal domain HPY11_08165 PF00691 OmpA family HPY11_08165 PF13488 Glycine zipper HPY11_08185 PF01259 SAICAR synthetase HPY11_08195 PF00390 Malic enzyme, N-terminal domain HPY11_08195 PF03949 Malic enzyme, NAD binding domain HPY11_08205 PF02698 DUF218 domain HPY11_08210 PF00990 Diguanylate cyclase, GGDEF domain HPY11_08210 PF08448 PAS fold HPY11_08215 PF00266 Aminotransferase class-V HPY11_08225 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY11_08230 PF00664 ABC transporter transmembrane region HPY11_08230 PF00005 ABC transporter HPY11_08235 PF00005 ABC transporter HPY11_08235 PF00664 ABC transporter transmembrane region HPY11_08240 PF01479 S4 domain HPY11_08240 PF00849 RNA pseudouridylate synthase HPY11_08245 PF01300 Telomere recombination HPY11_08250 PF02811 PHP domain HPY11_08255 PF08056 Tryptophan operon leader peptide HPY11_08260 PF04715 Anthranilate synthase component I, N terminal region HPY11_08260 PF00425 chorismate binding enzyme HPY11_08265 PF00117 Glutamine amidotransferase class-I HPY11_08270 PF00591 Glycosyl transferase family, a/b domain HPY11_08270 PF02885 Glycosyl transferase family, helical bundle domain HPY11_08275 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HPY11_08275 PF00218 Indole-3-glycerol phosphate synthase HPY11_08280 PF00291 Pyridoxal-phosphate dependent enzyme HPY11_08285 PF00290 Tryptophan synthase alpha chain HPY11_08290 PF00375 Sodium:dicarboxylate symporter family HPY11_08295 PF00265 Thymidine kinase HPY11_08300 PF01336 OB-fold nucleic acid binding domain HPY11_08300 PF02938 GAD domain HPY11_08300 PF00152 tRNA synthetases class II (D, K and N) HPY11_08305 PF01904 Protein of unknown function DUF72 HPY11_08310 PF13649 Methyltransferase domain HPY11_08315 PF08003 Protein of unknown function (DUF1698) HPY11_08320 PF08443 RimK-like ATP-grasp domain HPY11_08320 PF18030 RimK PreATP-grasp domain HPY11_08335 PF00266 Aminotransferase class-V HPY11_08345 PF00989 PAS fold HPY11_08345 PF00512 His Kinase A (phospho-acceptor) domain HPY11_08345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_08360 PF04994 TfoX C-terminal domain HPY11_08360 PF04993 TfoX N-terminal domain HPY11_08370 PF03956 Lysine exporter LysO HPY11_08380 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY11_08385 PF01380 SIS domain HPY11_08385 PF01418 Helix-turn-helix domain, rpiR family HPY11_08390 PF00465 Iron-containing alcohol dehydrogenase HPY11_08390 PF00171 Aldehyde dehydrogenase family HPY11_08395 PF00462 Glutaredoxin HPY11_08400 PF02080 TrkA-C domain HPY11_08400 PF06826 Predicted Permease Membrane Region HPY11_08405 PF17871 AAA lid domain HPY11_08405 PF10431 C-terminal, D2-small domain, of ClpB protein HPY11_08405 PF02861 Clp amino terminal domain, pathogenicity island component HPY11_08405 PF00004 ATPase family associated with various cellular activities (AAA) HPY11_08405 PF07724 AAA domain (Cdc48 subfamily) HPY11_08410 PF02617 ATP-dependent Clp protease adaptor protein ClpS HPY11_08415 PF00313 'Cold-shock' DNA-binding domain HPY11_08420 PF03971 Monomeric isocitrate dehydrogenase HPY11_08425 PF00849 RNA pseudouridylate synthase HPY11_08430 PF01502 Phosphoribosyl-AMP cyclohydrolase HPY11_08430 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HPY11_08435 PF00977 Histidine biosynthesis protein HPY11_08440 PF00977 Histidine biosynthesis protein HPY11_08445 PF00117 Glutamine amidotransferase class-I HPY11_08450 PF08645 Polynucleotide kinase 3 phosphatase HPY11_08450 PF00475 Imidazoleglycerol-phosphate dehydratase HPY11_08455 PF00155 Aminotransferase class I and II HPY11_08460 PF00815 Histidinol dehydrogenase HPY11_08465 PF08029 HisG, C-terminal domain HPY11_08465 PF01634 ATP phosphoribosyltransferase HPY11_08470 PF03553 Na+/H+ antiporter family HPY11_08475 PF00816 H-NS histone family HPY11_08480 PF00294 pfkB family carbohydrate kinase HPY11_08490 PF04356 Protein of unknown function (DUF489) HPY11_08495 PF00206 Lyase HPY11_08495 PF08328 Adenylosuccinate lyase C-terminal HPY11_08505 PF16036 Chalcone isomerase-like HPY11_08530 PF00106 short chain dehydrogenase HPY11_08540 PF01435 Peptidase family M48 HPY11_08555 PF08241 Methyltransferase domain HPY11_08560 PF00155 Aminotransferase class I and II HPY11_08565 PF04055 Radical SAM superfamily HPY11_08565 PF06968 Biotin and Thiamin Synthesis associated domain HPY11_08570 PF00202 Aminotransferase class-III HPY11_08575 PF02403 Seryl-tRNA synthetase N-terminal domain HPY11_08575 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY11_08580 PF16193 AAA C-terminal domain HPY11_08580 PF12002 MgsA AAA+ ATPase C terminal HPY11_08580 PF00004 ATPase family associated with various cellular activities (AAA) HPY11_08585 PF03548 Outer membrane lipoprotein carrier protein LolA HPY11_08590 PF07517 SecA DEAD-like domain HPY11_08590 PF01043 SecA preprotein cross-linking domain HPY11_08590 PF07516 SecA Wing and Scaffold domain HPY11_08590 PF02810 SEC-C motif HPY11_08595 PF01207 Dihydrouridine synthase (Dus) HPY11_08600 PF00990 Diguanylate cyclase, GGDEF domain HPY11_08605 PF00005 ABC transporter HPY11_08610 PF02653 Branched-chain amino acid transport system / permease component HPY11_08620 PF09905 DNA-binding protein VF530 HPY11_08625 PF04217 Protein of unknown function, DUF412 HPY11_08630 PF00871 Acetokinase family HPY11_08635 PF07085 DRTGG domain HPY11_08635 PF01515 Phosphate acetyl/butaryl transferase HPY11_08640 PF13409 Glutathione S-transferase, N-terminal domain HPY11_08645 PF00005 ABC transporter HPY11_08645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY11_08650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY11_08650 PF00005 ABC transporter HPY11_08655 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY11_08655 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_08660 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_08665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY11_08675 PF08448 PAS fold HPY11_08675 PF00512 His Kinase A (phospho-acceptor) domain HPY11_08675 PF00072 Response regulator receiver domain HPY11_08675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_08675 PF13188 PAS domain HPY11_08680 PF00158 Sigma-54 interaction domain HPY11_08680 PF00072 Response regulator receiver domain HPY11_08680 PF02954 Bacterial regulatory protein, Fis family HPY11_08685 PF00563 EAL domain HPY11_08685 PF13188 PAS domain HPY11_08685 PF00990 Diguanylate cyclase, GGDEF domain HPY11_08685 PF03707 Bacterial signalling protein N terminal repeat HPY11_08690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_08690 PF00512 His Kinase A (phospho-acceptor) domain HPY11_08695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_08695 PF00989 PAS fold HPY11_08695 PF13426 PAS domain HPY11_08695 PF13188 PAS domain HPY11_08695 PF00512 His Kinase A (phospho-acceptor) domain HPY11_08705 PF00072 Response regulator receiver domain HPY11_08720 PF03481 Putative GTP-binding controlling metal-binding HPY11_08720 PF01300 Telomere recombination HPY11_08735 PF01161 Phosphatidylethanolamine-binding protein HPY11_08745 PF06483 Chitinase C HPY11_08745 PF00704 Glycosyl hydrolases family 18 HPY11_08760 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY11_08760 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY11_08765 PF01022 Bacterial regulatory protein, arsR family HPY11_08785 PF00717 Peptidase S24-like HPY11_08820 PF08463 EcoEI R protein C-terminal HPY11_08820 PF00271 Helicase conserved C-terminal domain HPY11_08820 PF04851 Type III restriction enzyme, res subunit HPY11_08820 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) HPY11_08830 PF02384 N-6 DNA Methylase HPY11_08830 PF12161 HsdM N-terminal domain HPY11_08835 PF02151 UvrB/uvrC motif HPY11_08835 PF01541 GIY-YIG catalytic domain HPY11_08835 PF08459 UvrC Helix-hairpin-helix N-terminal HPY11_08875 PF00990 Diguanylate cyclase, GGDEF domain HPY11_08875 PF08448 PAS fold HPY11_08885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY11_08900 PF01037 Lrp/AsnC ligand binding domain HPY11_08900 PF13404 AsnC-type helix-turn-helix domain HPY11_08905 PF00291 Pyridoxal-phosphate dependent enzyme HPY11_08910 PF01343 Peptidase family S49 HPY11_08910 PF08496 Peptidase family S49 N-terminal HPY11_08915 PF00106 short chain dehydrogenase HPY11_08920 PF03692 Putative zinc- or iron-chelating domain HPY11_08925 PF03692 Putative zinc- or iron-chelating domain HPY11_08930 PF13662 Toprim domain HPY11_08930 PF02132 RecR protein HPY11_08935 PF02575 YbaB/EbfC DNA-binding family HPY11_08940 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HPY11_08940 PF12169 DNA polymerase III subunits gamma and tau domain III HPY11_08940 PF12170 DNA polymerase III tau subunit V interacting with alpha HPY11_08945 PF00156 Phosphoribosyl transferase domain HPY11_08950 PF04304 Protein of unknown function (DUF454) HPY11_08955 PF00072 Response regulator receiver domain HPY11_08960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_08960 PF03466 LysR substrate binding domain HPY11_08965 PF00881 Nitroreductase family HPY11_08970 PF00378 Enoyl-CoA hydratase/isomerase HPY11_08970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY11_08970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY11_08975 PF02803 Thiolase, C-terminal domain HPY11_08975 PF00108 Thiolase, N-terminal domain HPY11_08980 PF08281 Sigma-70, region 4 HPY11_08980 PF04542 Sigma-70 region 2 HPY11_08990 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY11_08995 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY11_09000 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY11_09005 PF12557 Cob(I)alamin adenosyltransferase N terminal HPY11_09005 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HPY11_09010 PF05170 AsmA family HPY11_09015 PF00485 Phosphoribulokinase / Uridine kinase family HPY11_09020 PF10609 NUBPL iron-transfer P-loop NTPase HPY11_09025 PF01588 Putative tRNA binding domain HPY11_09025 PF09334 tRNA synthetases class I (M) HPY11_09035 PF01048 Phosphorylase superfamily HPY11_09040 PF00403 Heavy-metal-associated domain HPY11_09045 PF01743 Poly A polymerase head domain HPY11_09045 PF00571 CBS domain HPY11_09050 PF00990 Diguanylate cyclase, GGDEF domain HPY11_09050 PF07694 5TMR of 5TMR-LYT HPY11_09055 PF02391 MoaE protein HPY11_09060 PF02597 ThiS family HPY11_09065 PF01967 MoaC family HPY11_09070 PF00994 Probable molybdopterin binding domain HPY11_09075 PF04055 Radical SAM superfamily HPY11_09075 PF06463 Molybdenum Cofactor Synthesis C HPY11_09080 PF01933 Uncharacterised protein family UPF0052 HPY11_09085 PF01627 Hpt domain HPY11_09090 PF00072 Response regulator receiver domain HPY11_09090 PF00158 Sigma-54 interaction domain HPY11_09090 PF02954 Bacterial regulatory protein, Fis family HPY11_09095 PF17757 UvrB interaction domain HPY11_09095 PF02151 UvrB/uvrC motif HPY11_09095 PF12344 Ultra-violet resistance protein B HPY11_09095 PF00271 Helicase conserved C-terminal domain HPY11_09095 PF04851 Type III restriction enzyme, res subunit HPY11_09105 PF02508 Rnf-Nqr subunit, membrane protein HPY11_09110 PF04060 Putative Fe-S cluster HPY11_09115 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HPY11_09115 PF12838 4Fe-4S dicluster domain HPY11_09115 PF10531 SLBB domain HPY11_09115 PF13375 RnfC Barrel sandwich hybrid domain HPY11_09120 PF03116 NQR2, RnfD, RnfE family HPY11_09125 PF04205 FMN-binding domain HPY11_09130 PF02508 Rnf-Nqr subunit, membrane protein HPY11_09135 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY11_09135 PF00633 Helix-hairpin-helix motif HPY11_09135 PF10576 Iron-sulfur binding domain of endonuclease III HPY11_09140 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY11_09145 PF10952 Protein of unknown function (DUF2753) HPY11_09150 PF00691 OmpA family HPY11_09150 PF18393 MotY N-terminal domain HPY11_09155 PF00929 Exonuclease HPY11_09160 PF13726 Na+-H+ antiporter family HPY11_09160 PF03553 Na+/H+ antiporter family HPY11_09165 PF00156 Phosphoribosyl transferase domain HPY11_09170 PF02674 Colicin V production protein HPY11_09175 PF05036 Sporulation related domain HPY11_09180 PF08245 Mur ligase middle domain HPY11_09180 PF02875 Mur ligase family, glutamate ligase domain HPY11_09185 PF17848 Acetyl-coA carboxylase zinc finger domain HPY11_09185 PF01039 Carboxyl transferase domain HPY11_09190 PF01416 tRNA pseudouridine synthase HPY11_09200 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY11_09200 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HPY11_09205 PF00367 phosphotransferase system, EIIB HPY11_09205 PF02378 Phosphotransferase system, EIIC HPY11_09205 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY11_09210 PF01979 Amidohydrolase family HPY11_09215 PF00480 ROK family HPY11_09215 PF01047 MarR family HPY11_09220 PF00999 Sodium/hydrogen exchanger family HPY11_09220 PF02254 TrkA-N domain HPY11_09225 PF00733 Asparagine synthase HPY11_09225 PF13537 Glutamine amidotransferase domain HPY11_09230 PF02357 Transcription termination factor nusG HPY11_09235 PF00854 POT family HPY11_09240 PF00762 Ferrochelatase HPY11_09245 PF05191 Adenylate kinase, active site lid HPY11_09250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_09250 PF00183 Hsp90 protein HPY11_09255 PF00486 Transcriptional regulatory protein, C terminal HPY11_09260 PF17323 Trans-membrane regulatory protein ToxS HPY11_09270 PF12850 Calcineurin-like phosphoesterase superfamily domain HPY11_09275 PF01370 NAD dependent epimerase/dehydratase family HPY11_09275 PF08338 Domain of unknown function (DUF1731) HPY11_09280 PF00106 short chain dehydrogenase HPY11_09285 PF00085 Thioredoxin HPY11_09290 PF16200 C-terminal region of band_7 HPY11_09290 PF01145 SPFH domain / Band 7 family HPY11_09295 PF01957 NfeD-like C-terminal, partner-binding HPY11_09300 PF13411 MerR HTH family regulatory protein HPY11_09310 PF13609 Gram-negative porin HPY11_09315 PF00533 BRCA1 C Terminus (BRCT) domain HPY11_09315 PF03120 NAD-dependent DNA ligase OB-fold domain HPY11_09315 PF12826 Helix-hairpin-helix motif HPY11_09315 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HPY11_09315 PF01653 NAD-dependent DNA ligase adenylation domain HPY11_09320 PF04354 ZipA, C-terminal FtsZ-binding domain HPY11_09330 PF00291 Pyridoxal-phosphate dependent enzyme HPY11_09335 PF00381 PTS HPr component phosphorylation site HPY11_09340 PF00391 PEP-utilising enzyme, mobile domain HPY11_09340 PF02896 PEP-utilising enzyme, TIM barrel domain HPY11_09340 PF05524 PEP-utilising enzyme, N-terminal HPY11_09345 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY11_09350 PF01494 FAD binding domain HPY11_09355 PF04055 Radical SAM superfamily HPY11_09355 PF01938 TRAM domain HPY11_09355 PF00919 Uncharacterized protein family UPF0004 HPY11_09360 PF02562 PhoH-like protein HPY11_09365 PF02130 Uncharacterized protein family UPF0054 HPY11_09370 PF00571 CBS domain HPY11_09370 PF03471 Transporter associated domain HPY11_09375 PF00795 Carbon-nitrogen hydrolase HPY11_09380 PF07295 Zinc-ribbon containing domain HPY11_09385 PF13603 Leucyl-tRNA synthetase, Domain 2 HPY11_09385 PF00133 tRNA synthetases class I (I, L, M and V) HPY11_09385 PF08264 Anticodon-binding domain of tRNA HPY11_09390 PF04390 Lipopolysaccharide-assembly HPY11_09395 PF06144 DNA polymerase III, delta subunit HPY11_09395 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HPY11_09405 PF02590 Predicted SPOUT methyltransferase HPY11_09410 PF00905 Penicillin binding protein transpeptidase domain HPY11_09410 PF03717 Penicillin-binding Protein dimerisation domain HPY11_09415 PF01098 Cell cycle protein HPY11_09420 PF05036 Sporulation related domain HPY11_09420 PF03330 Lytic transglycolase HPY11_09425 PF07943 Penicillin-binding protein 5, C-terminal domain HPY11_09425 PF00768 D-alanyl-D-alanine carboxypeptidase HPY11_09430 PF04359 Protein of unknown function (DUF493) HPY11_09435 PF03099 Biotin/lipoate A/B protein ligase family HPY11_09440 PF04055 Radical SAM superfamily HPY11_09440 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HPY11_09450 PF00464 Serine hydroxymethyltransferase HPY11_09470 PF02706 Chain length determinant protein HPY11_09470 PF13807 G-rich domain on putative tyrosine kinase HPY11_09470 PF13614 AAA domain HPY11_09475 PF10531 SLBB domain HPY11_09475 PF02563 Polysaccharide biosynthesis/export protein HPY11_09475 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HPY11_09485 PF02397 Bacterial sugar transferase HPY11_09500 PF17945 Beta/Gamma crystallin HPY11_09500 PF12561 ToxR activated gene A lipoprotein domain HPY11_09515 PF03808 Glycosyl transferase WecB/TagA/CpsF family HPY11_09525 PF00534 Glycosyl transferases group 1 HPY11_09525 PF13439 Glycosyltransferase Family 4 HPY11_09535 PF00132 Bacterial transferase hexapeptide (six repeats) HPY11_09555 PF12464 Maltose acetyltransferase HPY11_09555 PF14602 Hexapeptide repeat of succinyl-transferase HPY11_09560 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HPY11_09560 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY11_09560 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY11_09565 PF02350 UDP-N-acetylglucosamine 2-epimerase HPY11_09570 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY11_09575 PF00873 AcrB/AcrD/AcrF family HPY11_09580 PF13533 Biotin-lipoyl like HPY11_09605 PF16657 Maltogenic Amylase, C-terminal domain HPY11_09605 PF00128 Alpha amylase, catalytic domain HPY11_09610 PF02378 Phosphotransferase system, EIIC HPY11_09610 PF00367 phosphotransferase system, EIIB HPY11_09615 PF00356 Bacterial regulatory proteins, lacI family HPY11_09625 PF09383 NIL domain HPY11_09625 PF00005 ABC transporter HPY11_09630 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_09635 PF03180 NLPA lipoprotein HPY11_09640 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HPY11_09645 PF07348 Syd protein (SUKH-2) HPY11_09650 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HPY11_09650 PF14489 QueF-like protein HPY11_09660 PF00990 Diguanylate cyclase, GGDEF domain HPY11_09665 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HPY11_09665 PF11892 Domain of unknown function (DUF3412) HPY11_09665 PF03641 Possible lysine decarboxylase HPY11_09670 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY11_09670 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY11_09675 PF04241 Protein of unknown function (DUF423) HPY11_09680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_09680 PF03466 LysR substrate binding domain HPY11_09685 PF02568 Thiamine biosynthesis protein (ThiI) HPY11_09685 PF02926 THUMP domain HPY11_09690 PF13677 Membrane MotB of proton-channel complex MotA/MotB HPY11_09690 PF00691 OmpA family HPY11_09695 PF01618 MotA/TolQ/ExbB proton channel family HPY11_09700 PF02609 Exonuclease VII small subunit HPY11_09705 PF00348 Polyprenyl synthetase HPY11_09710 PF02780 Transketolase, C-terminal domain HPY11_09710 PF02779 Transketolase, pyrimidine binding domain HPY11_09710 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HPY11_09715 PF00849 RNA pseudouridylate synthase HPY11_09720 PF04287 tRNA pseudouridine synthase C HPY11_09735 PF13302 Acetyltransferase (GNAT) domain HPY11_09745 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HPY11_09750 PF13006 Insertion element 4 transposase N-terminal HPY11_09750 PF01609 Transposase DDE domain HPY11_09755 PF03806 AbgT putative transporter family HPY11_09760 PF00444 Ribosomal protein L36 HPY11_09765 PF01197 Ribosomal protein L31 HPY11_09770 PF01980 tRNA-methyltransferase O HPY11_09770 PF18389 TrmO C-terminal domain HPY11_09775 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY11_09775 PF03129 Anticodon binding domain HPY11_09775 PF04073 Aminoacyl-tRNA editing domain HPY11_09785 PF06786 Uncharacterised protein family (UPF0253) HPY11_09795 PF02769 AIR synthase related protein, C-terminal domain HPY11_09795 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HPY11_09795 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HPY11_09805 PF01464 Transglycosylase SLT domain HPY11_09805 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY11_09810 PF14437 MafB19-like deaminase HPY11_09815 PF03806 AbgT putative transporter family HPY11_09840 PF07963 Prokaryotic N-terminal methylation motif HPY11_09840 PF00114 Pilin (bacterial filament) HPY11_09845 PF00226 DnaJ domain HPY11_09845 PF00684 DnaJ central domain HPY11_09845 PF01556 DnaJ C terminal domain HPY11_09850 PF00012 Hsp70 protein HPY11_09855 PF01025 GrpE HPY11_09860 PF01513 ATP-NAD kinase HPY11_09865 PF02463 RecF/RecN/SMC N terminal domain HPY11_09870 PF04355 SmpA / OmlA family HPY11_09875 PF03658 RnfH family Ubiquitin HPY11_09880 PF03364 Polyketide cyclase / dehydrase and lipid transport HPY11_09885 PF01668 SmpB protein HPY11_09905 PF11867 Domain of unknown function (DUF3387) HPY11_09905 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HPY11_09905 PF18766 SWI2/SNF2 ATPase HPY11_09920 PF02384 N-6 DNA Methylase HPY11_09940 PF11953 Domain of unknown function (DUF3470) HPY11_09940 PF00037 4Fe-4S binding domain HPY11_09945 PF00588 SpoU rRNA Methylase family HPY11_09945 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY11_09975 PF01266 FAD dependent oxidoreductase HPY11_09980 PF01235 Sodium:alanine symporter family HPY11_09985 PF00753 Metallo-beta-lactamase superfamily HPY11_09985 PF14863 Alkyl sulfatase dimerisation HPY11_09985 PF14864 Alkyl sulfatase C-terminal HPY11_09990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_09990 PF03466 LysR substrate binding domain HPY11_09995 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HPY11_09995 PF01648 4'-phosphopantetheinyl transferase superfamily HPY11_10000 PF00005 ABC transporter HPY11_10005 PF01032 FecCD transport family HPY11_10010 PF01032 FecCD transport family HPY11_10015 PF01497 Periplasmic binding protein HPY11_10030 PF00425 chorismate binding enzyme HPY11_10035 PF13193 AMP-binding enzyme C-terminal domain HPY11_10035 PF00501 AMP-binding enzyme HPY11_10040 PF00857 Isochorismatase family HPY11_10040 PF00550 Phosphopantetheine attachment site HPY11_10045 PF01184 GPR1/FUN34/yaaH family HPY11_10050 PF06483 Chitinase C HPY11_10050 PF00704 Glycosyl hydrolases family 18 HPY11_10055 PF01510 N-acetylmuramoyl-L-alanine amidase HPY11_10060 PF05199 GMC oxidoreductase HPY11_10060 PF00732 GMC oxidoreductase HPY11_10090 PF00004 ATPase family associated with various cellular activities (AAA) HPY11_10125 PF03432 Relaxase/Mobilisation nuclease domain HPY11_10125 PF18821 Large polyvalent protein-associated domain 7 HPY11_10150 PF02384 N-6 DNA Methylase HPY11_10155 PF13356 Arm DNA-binding domain HPY11_10155 PF00589 Phage integrase family HPY11_10160 PF00958 GMP synthase C terminal domain HPY11_10160 PF00117 Glutamine amidotransferase class-I HPY11_10160 PF02540 NAD synthase HPY11_10165 PF00571 CBS domain HPY11_10165 PF00478 IMP dehydrogenase / GMP reductase domain HPY11_10170 PF02601 Exonuclease VII, large subunit HPY11_10170 PF13742 OB-fold nucleic acid binding domain HPY11_10185 PF01926 50S ribosome-binding GTPase HPY11_10185 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HPY11_10190 PF13360 PQQ-like domain HPY11_10195 PF09976 Tetratricopeptide repeat-like domain HPY11_10200 PF03129 Anticodon binding domain HPY11_10200 PF13393 Histidyl-tRNA synthetase HPY11_10205 PF04551 GcpE protein HPY11_10210 PF13464 Domain of unknown function (DUF4115) HPY11_10215 PF04055 Radical SAM superfamily HPY11_10220 PF00334 Nucleoside diphosphate kinase HPY11_10225 PF00883 Cytosol aminopeptidase family, catalytic domain HPY11_10225 PF12404 Peptidase HPY11_10230 PF04384 Iron-sulphur cluster assembly HPY11_10235 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY11_10240 PF00012 Hsp70 protein HPY11_10245 PF07743 HSCB C-terminal oligomerisation domain HPY11_10245 PF00226 DnaJ domain HPY11_10250 PF01521 Iron-sulphur cluster biosynthesis HPY11_10255 PF01592 NifU-like N terminal domain HPY11_10260 PF00266 Aminotransferase class-V HPY11_10265 PF02082 Transcriptional regulator HPY11_10270 PF00588 SpoU rRNA Methylase family HPY11_10275 PF00459 Inositol monophosphatase family HPY11_10280 PF02355 Protein export membrane protein HPY11_10280 PF07549 SecD/SecF GG Motif HPY11_10285 PF07549 SecD/SecF GG Motif HPY11_10285 PF13721 SecD export protein N-terminal TM region HPY11_10285 PF02355 Protein export membrane protein HPY11_10290 PF02699 Preprotein translocase subunit HPY11_10295 PF01702 Queuine tRNA-ribosyltransferase HPY11_10300 PF02547 Queuosine biosynthesis protein HPY11_10305 PF00571 CBS domain HPY11_10310 PF00463 Isocitrate lyase family HPY11_10315 PF01274 Malate synthase HPY11_10320 PF03466 LysR substrate binding domain HPY11_10320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_10325 PF10417 C-terminal domain of 1-Cys peroxiredoxin HPY11_10325 PF00578 AhpC/TSA family HPY11_10330 PF03932 CutC family HPY11_10335 PF03976 Polyphosphate kinase 2 (PPK2) HPY11_10340 PF01895 PhoU domain HPY11_10345 PF00005 ABC transporter HPY11_10350 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_10355 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_10360 PF13089 Polyphosphate kinase N-terminal domain HPY11_10360 PF17941 Polyphosphate kinase C-terminal domain 1 HPY11_10360 PF13090 Polyphosphate kinase C-terminal domain 2 HPY11_10360 PF02503 Polyphosphate kinase middle domain HPY11_10365 PF02541 Ppx/GppA phosphatase family HPY11_10370 PF12849 PBP superfamily domain HPY11_10375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_10375 PF00512 His Kinase A (phospho-acceptor) domain HPY11_10375 PF00989 PAS fold HPY11_10375 PF11808 Phosphate regulon sensor protein PhoR HPY11_10380 PF00072 Response regulator receiver domain HPY11_10380 PF00486 Transcriptional regulatory protein, C terminal HPY11_10385 PF04381 Putative exonuclease, RdgC HPY11_10395 PF00037 4Fe-4S binding domain HPY11_10400 PF00881 Nitroreductase family HPY11_10440 PF02861 Clp amino terminal domain, pathogenicity island component HPY11_10440 PF17871 AAA lid domain HPY11_10440 PF10431 C-terminal, D2-small domain, of ClpB protein HPY11_10440 PF07724 AAA domain (Cdc48 subfamily) HPY11_10440 PF00004 ATPase family associated with various cellular activities (AAA) HPY11_10450 PF01479 S4 domain HPY11_10450 PF00849 RNA pseudouridylate synthase HPY11_10455 PF13525 Outer membrane lipoprotein HPY11_10460 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY11_10465 PF00800 Prephenate dehydratase HPY11_10465 PF01817 Chorismate mutase type II HPY11_10470 PF13416 Bacterial extracellular solute-binding protein HPY11_10475 PF00563 EAL domain HPY11_10475 PF00990 Diguanylate cyclase, GGDEF domain HPY11_10480 PF01931 Protein of unknown function DUF84 HPY11_10485 PF01371 Trp repressor protein HPY11_10490 PF01464 Transglycosylase SLT domain HPY11_10490 PF14718 Soluble lytic murein transglycosylase L domain HPY11_10495 PF12848 ABC transporter HPY11_10495 PF00005 ABC transporter HPY11_10500 PF07238 PilZ domain HPY11_10505 PF02153 Prephenate dehydrogenase HPY11_10505 PF01817 Chorismate mutase type II HPY11_10510 PF00793 DAHP synthetase I family HPY11_10515 PF06580 Histidine kinase HPY11_10515 PF07694 5TMR of 5TMR-LYT HPY11_10520 PF00072 Response regulator receiver domain HPY11_10520 PF04397 LytTr DNA-binding domain HPY11_10525 PF00933 Glycosyl hydrolase family 3 N terminal domain HPY11_10530 PF03702 Anhydro-N-acetylmuramic acid kinase HPY11_10535 PF13580 SIS domain HPY11_10550 PF02554 Carbon starvation protein CstA HPY11_10555 PF02401 LytB protein HPY11_10560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY11_10565 PF01252 Signal peptidase (SPase) II HPY11_10570 PF08264 Anticodon-binding domain of tRNA HPY11_10570 PF06827 Zinc finger found in FPG and IleRS HPY11_10570 PF00133 tRNA synthetases class I (I, L, M and V) HPY11_10575 PF01687 Riboflavin kinase HPY11_10575 PF06574 FAD synthetase HPY11_10580 PF03023 Lipid II flippase MurJ HPY11_10585 PF01649 Ribosomal protein S20 HPY11_10590 PF01022 Bacterial regulatory protein, arsR family HPY11_10595 PF03466 LysR substrate binding domain HPY11_10595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_10600 PF02690 Na+/Pi-cotransporter HPY11_10605 PF00303 Thymidylate synthase HPY11_10610 PF01790 Prolipoprotein diacylglyceryl transferase HPY11_10615 PF01925 Sulfite exporter TauE/SafE HPY11_10620 PF01590 GAF domain HPY11_10620 PF05524 PEP-utilising enzyme, N-terminal HPY11_10620 PF00391 PEP-utilising enzyme, mobile domain HPY11_10620 PF02896 PEP-utilising enzyme, TIM barrel domain HPY11_10625 PF00293 NUDIX domain HPY11_10630 PF02976 DNA mismatch repair enzyme MutH HPY11_10635 PF00248 Aldo/keto reductase family HPY11_10645 PF00072 Response regulator receiver domain HPY11_10645 PF02954 Bacterial regulatory protein, Fis family HPY11_10645 PF00158 Sigma-54 interaction domain HPY11_10650 PF01336 OB-fold nucleic acid binding domain HPY11_10650 PF00152 tRNA synthetases class II (D, K and N) HPY11_10660 PF05525 Branched-chain amino acid transport protein HPY11_10665 PF05175 Methyltransferase small domain HPY11_10670 PF00270 DEAD/DEAH box helicase HPY11_10670 PF00271 Helicase conserved C-terminal domain HPY11_10675 PF00009 Elongation factor Tu GTP binding domain HPY11_10675 PF16658 Class II release factor RF3, C-terminal domain HPY11_10675 PF03144 Elongation factor Tu domain 2 HPY11_10680 PF00563 EAL domain HPY11_10680 PF03707 Bacterial signalling protein N terminal repeat HPY11_10680 PF00990 Diguanylate cyclase, GGDEF domain HPY11_10695 PF13508 Acetyltransferase (GNAT) domain HPY11_10700 PF02036 SCP-2 sterol transfer family HPY11_10705 PF00990 Diguanylate cyclase, GGDEF domain HPY11_10705 PF00563 EAL domain HPY11_10705 PF03707 Bacterial signalling protein N terminal repeat HPY11_10710 PF01136 Peptidase family U32 HPY11_10715 PF01136 Peptidase family U32 HPY11_10730 PF13006 Insertion element 4 transposase N-terminal HPY11_10730 PF01609 Transposase DDE domain HPY11_10735 PF13181 Tetratricopeptide repeat HPY11_10735 PF07719 Tetratricopeptide repeat HPY11_10740 PF00013 KH domain HPY11_10740 PF00575 S1 RNA binding domain HPY11_10740 PF03725 3' exoribonuclease family, domain 2 HPY11_10740 PF01138 3' exoribonuclease family, domain 1 HPY11_10740 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HPY11_10745 PF00312 Ribosomal protein S15 HPY11_10750 PF09157 Pseudouridine synthase II TruB, C-terminal HPY11_10750 PF16198 tRNA pseudouridylate synthase B C-terminal domain HPY11_10750 PF01509 TruB family pseudouridylate synthase (N terminal domain) HPY11_10755 PF02033 Ribosome-binding factor A HPY11_10760 PF08364 Bacterial translation initiation factor IF-2 associated region HPY11_10760 PF00009 Elongation factor Tu GTP binding domain HPY11_10760 PF04760 Translation initiation factor IF-2, N-terminal region HPY11_10760 PF11987 Translation-initiation factor 2 HPY11_10765 PF08529 NusA N-terminal domain HPY11_10765 PF13184 NusA-like KH domain HPY11_10765 PF00575 S1 RNA binding domain HPY11_10770 PF02576 RimP N-terminal domain HPY11_10770 PF17384 RimP C-terminal SH3 domain HPY11_10785 PF03840 Preprotein translocase SecG subunit HPY11_10790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY11_10790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY11_10790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY11_10790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY11_10795 PF00809 Pterin binding enzyme HPY11_10800 PF01434 Peptidase family M41 HPY11_10800 PF00004 ATPase family associated with various cellular activities (AAA) HPY11_10800 PF17862 AAA+ lid domain HPY11_10800 PF06480 FtsH Extracellular HPY11_10805 PF01728 FtsJ-like methyltransferase HPY11_10810 PF01985 CRS1 / YhbY (CRM) domain HPY11_10815 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY11_10815 PF03449 Transcription elongation factor, N-terminal HPY11_10820 PF13609 Gram-negative porin HPY11_10825 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HPY11_10830 PF01479 S4 domain HPY11_10830 PF00579 tRNA synthetases class I (W and Y) HPY11_10835 PF01551 Peptidase family M23 HPY11_10835 PF04225 Opacity-associated protein A LysM-like domain HPY11_10840 PF00873 AcrB/AcrD/AcrF family HPY11_10850 PF01521 Iron-sulphur cluster biosynthesis HPY11_10860 PF00202 Aminotransferase class-III HPY11_10865 PF01594 AI-2E family transporter HPY11_10870 PF08468 Methyltransferase small domain N-terminal HPY11_10870 PF05175 Methyltransferase small domain HPY11_10875 PF17149 Periplasmic sensor domain found in signal transduction proteins HPY11_10875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_10875 PF00672 HAMP domain HPY11_10875 PF00512 His Kinase A (phospho-acceptor) domain HPY11_10875 PF00072 Response regulator receiver domain HPY11_10875 PF01627 Hpt domain HPY11_10880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY11_10885 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_10890 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY11_10890 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_10895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY11_10895 PF00005 ABC transporter HPY11_10900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY11_10900 PF00005 ABC transporter HPY11_10910 PF01869 BadF/BadG/BcrA/BcrD ATPase family HPY11_10915 PF02838 Glycosyl hydrolase family 20, domain 2 HPY11_10915 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY11_10920 PF06165 Glycosyltransferase family 36 HPY11_10920 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain HPY11_10925 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY11_10925 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY11_10925 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY11_10925 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY11_10930 PF00005 ABC transporter HPY11_10930 PF08402 TOBE domain HPY11_10940 PF13416 Bacterial extracellular solute-binding protein HPY11_10945 PF00909 Ammonium Transporter Family HPY11_10950 PF00543 Nitrogen regulatory protein P-II HPY11_10955 PF06062 Uncharacterised protein family (UPF0231) HPY11_10960 PF11791 Aconitate B N-terminal domain HPY11_10960 PF00330 Aconitase family (aconitate hydratase) HPY11_10960 PF06434 Aconitate hydratase 2 N-terminus HPY11_10965 PF01734 Patatin-like phospholipase HPY11_10970 PF14814 Bifunctional transglycosylase second domain HPY11_10970 PF00912 Transglycosylase HPY11_10970 PF00905 Penicillin binding protein transpeptidase domain HPY11_10975 PF08482 ATP-dependent helicase C-terminal HPY11_10975 PF04408 Helicase associated domain (HA2) HPY11_10975 PF00270 DEAD/DEAH box helicase HPY11_10975 PF00271 Helicase conserved C-terminal domain HPY11_10985 PF03749 Sugar fermentation stimulation protein RE domain HPY11_10985 PF17746 SfsA N-terminal OB domain HPY11_10990 PF01258 Prokaryotic dksA/traR C4-type zinc finger HPY11_10995 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY11_11000 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY11_11000 PF01743 Poly A polymerase head domain HPY11_11000 PF12626 Polymerase A arginine-rich C-terminus HPY11_11005 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY11_11010 PF02548 Ketopantoate hydroxymethyltransferase HPY11_11015 PF02569 Pantoate-beta-alanine ligase HPY11_11020 PF01061 ABC-2 type transporter HPY11_11025 PF00005 ABC transporter HPY11_11030 PF01740 STAS domain HPY11_11030 PF00916 Sulfate permease family HPY11_11035 PF00484 Carbonic anhydrase HPY11_11040 PF00156 Phosphoribosyl transferase domain HPY11_11045 PF00440 Bacterial regulatory proteins, tetR family HPY11_11050 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY11_11055 PF04348 LppC putative lipoprotein HPY11_11060 PF02021 Uncharacterised protein family UPF0102 HPY11_11065 PF13580 SIS domain HPY11_11070 PF04972 BON domain HPY11_11075 PF04386 Stringent starvation protein B HPY11_11080 PF00043 Glutathione S-transferase, C-terminal domain HPY11_11080 PF02798 Glutathione S-transferase, N-terminal domain HPY11_11085 PF02167 Cytochrome C1 family HPY11_11090 PF00033 Cytochrome b/b6/petB HPY11_11090 PF00032 Cytochrome b(C-terminal)/b6/petD HPY11_11095 PF00355 Rieske [2Fe-2S] domain HPY11_11095 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HPY11_11100 PF00380 Ribosomal protein S9/S16 HPY11_11105 PF00572 Ribosomal protein L13 HPY11_11110 PF03969 AFG1-like ATPase HPY11_11120 PF00595 PDZ domain HPY11_11125 PF13180 PDZ domain HPY11_11130 PF01245 Ribosomal protein L19 HPY11_11135 PF01746 tRNA (Guanine-1)-methyltransferase HPY11_11140 PF05239 PRC-barrel domain HPY11_11140 PF01782 RimM N-terminal domain HPY11_11145 PF00886 Ribosomal protein S16 HPY11_11150 PF02978 Signal peptide binding domain HPY11_11150 PF00448 SRP54-type protein, GTPase domain HPY11_11150 PF02881 SRP54-type protein, helical bundle domain HPY11_11155 PF01578 Cytochrome C assembly protein HPY11_11160 PF00571 CBS domain HPY11_11160 PF01595 Cyclin M transmembrane N-terminal domain HPY11_11160 PF03471 Transporter associated domain HPY11_11165 PF02664 S-Ribosylhomocysteinase (LuxS) HPY11_11170 PF04262 Glutamate-cysteine ligase HPY11_11175 PF05193 Peptidase M16 inactive domain HPY11_11175 PF00675 Insulinase (Peptidase family M16) HPY11_11180 PF09335 SNARE associated Golgi protein HPY11_11190 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HPY11_11195 PF00364 Biotin-requiring enzyme HPY11_11195 PF00682 HMGL-like HPY11_11195 PF02436 Conserved carboxylase domain HPY11_11200 PF04277 Oxaloacetate decarboxylase, gamma chain HPY11_11245 PF02599 Global regulator protein family HPY11_11250 PF00696 Amino acid kinase family HPY11_11250 PF13840 ACT domain HPY11_11250 PF01842 ACT domain HPY11_11255 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY11_11255 PF01411 tRNA synthetases class II (A) HPY11_11255 PF02272 DHHA1 domain HPY11_11260 PF02631 RecX family HPY11_11265 PF00154 recA bacterial DNA recombination protein HPY11_11270 PF02464 Competence-damaged protein HPY11_11275 PF00005 ABC transporter HPY11_11275 PF12857 TOBE-like domain HPY11_11280 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_11285 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_11295 PF00291 Pyridoxal-phosphate dependent enzyme HPY11_11300 PF05192 MutS domain III HPY11_11300 PF01624 MutS domain I HPY11_11300 PF05190 MutS family domain IV HPY11_11300 PF00488 MutS domain V HPY11_11300 PF05188 MutS domain II HPY11_11305 PF04539 Sigma-70 region 3 HPY11_11305 PF04545 Sigma-70, region 4 HPY11_11305 PF00140 Sigma-70 factor, region 1.2 HPY11_11305 PF04542 Sigma-70 region 2 HPY11_11310 PF01476 LysM domain HPY11_11310 PF01551 Peptidase family M23 HPY11_11320 PF01975 Survival protein SurE HPY11_11325 PF01142 tRNA pseudouridine synthase D (TruD) HPY11_11330 PF02542 YgbB family HPY11_11335 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HPY11_11340 PF04977 Septum formation initiator HPY11_11345 PF02673 Bacitracin resistance protein BacA HPY11_11350 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY11_11355 PF02152 Dihydroneopterin aldolase HPY11_11360 PF02660 Glycerol-3-phosphate acyltransferase HPY11_11365 PF00561 alpha/beta hydrolase fold HPY11_11370 PF00814 Glycoprotease family HPY11_11375 PF01165 Ribosomal protein S21 HPY11_11380 PF09424 Yqey-like protein HPY11_11385 PF01807 CHC2 zinc finger HPY11_11385 PF08275 DNA primase catalytic core, N-terminal domain HPY11_11385 PF08278 DNA primase DnaG DnaB-binding HPY11_11385 PF10410 DnaB-helicase binding domain of primase HPY11_11390 PF04542 Sigma-70 region 2 HPY11_11390 PF00140 Sigma-70 factor, region 1.2 HPY11_11390 PF04539 Sigma-70 region 3 HPY11_11390 PF04545 Sigma-70, region 4 HPY11_11390 PF04546 Sigma-70, non-essential region HPY11_11390 PF03979 Sigma-70 factor, region 1.1 HPY11_11405 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY11_11410 PF01380 SIS domain HPY11_11415 PF08220 DeoR-like helix-turn-helix domain HPY11_11415 PF00455 DeoR C terminal sensor domain HPY11_11420 PF00224 Pyruvate kinase, barrel domain HPY11_11420 PF02887 Pyruvate kinase, alpha/beta domain HPY11_11425 PF04402 Protein of unknown function (DUF541) HPY11_11430 PF03466 LysR substrate binding domain HPY11_11430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_11435 PF01810 LysE type translocator HPY11_11440 PF05552 Conserved TM helix HPY11_11440 PF00924 Mechanosensitive ion channel HPY11_11445 PF01116 Fructose-bisphosphate aldolase class-II HPY11_11450 PF00162 Phosphoglycerate kinase HPY11_11455 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY11_11455 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY11_11460 PF00593 TonB dependent receptor HPY11_11460 PF07715 TonB-dependent Receptor Plug Domain HPY11_11465 PF03466 LysR substrate binding domain HPY11_11465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_11470 PF00456 Transketolase, thiamine diphosphate binding domain HPY11_11470 PF02780 Transketolase, C-terminal domain HPY11_11470 PF02779 Transketolase, pyrimidine binding domain HPY11_11475 PF02773 S-adenosylmethionine synthetase, C-terminal domain HPY11_11475 PF00438 S-adenosylmethionine synthetase, N-terminal domain HPY11_11475 PF02772 S-adenosylmethionine synthetase, central domain HPY11_11480 PF10263 SprT-like family HPY11_11480 PF17283 SprT-like zinc ribbon domain HPY11_11485 PF04231 Endonuclease I HPY11_11490 PF04452 RNA methyltransferase HPY11_11495 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HPY11_11495 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HPY11_11500 PF02622 Uncharacterized ACR, COG1678 HPY11_11505 PF03652 Holliday junction resolvase HPY11_11510 PF00579 tRNA synthetases class I (W and Y) HPY11_11510 PF01479 S4 domain HPY11_11520 PF00437 Type II/IV secretion system protein HPY11_11525 PF00437 Type II/IV secretion system protein HPY11_11530 PF01168 Alanine racemase, N-terminal domain HPY11_11535 PF14748 Pyrroline-5-carboxylate reductase dimerisation HPY11_11535 PF03807 NADP oxidoreductase coenzyme F420-dependent HPY11_11540 PF02325 YGGT family HPY11_11545 PF02594 Uncharacterised ACR, YggU family COG1872 HPY11_11555 PF01725 Ham1 family HPY11_11560 PF04055 Radical SAM superfamily HPY11_11560 PF06969 HemN C-terminal domain HPY11_11565 PF04960 Glutaminase HPY11_11570 PF02390 Putative methyltransferase HPY11_11575 PF10576 Iron-sulfur binding domain of endonuclease III HPY11_11575 PF00633 Helix-hairpin-helix motif HPY11_11575 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY11_11575 PF14815 NUDIX domain HPY11_11580 PF04362 Bacterial Fe(2+) trafficking HPY11_11585 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HPY11_11585 PF01464 Transglycosylase SLT domain HPY11_11610 PF12729 Four helix bundle sensory module for signal transduction HPY11_11610 PF00672 HAMP domain HPY11_11610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_11640 PF00226 DnaJ domain HPY11_11640 PF05099 Tellurite resistance protein TerB HPY11_11645 PF04453 LPS transport system D HPY11_11645 PF03968 OstA-like protein HPY11_11650 PF09312 SurA N-terminal domain HPY11_11655 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HPY11_11660 PF00398 Ribosomal RNA adenine dimethylase HPY11_11665 PF04379 ApaG domain HPY11_11670 PF00149 Calcineurin-like phosphoesterase HPY11_11675 PF00186 Dihydrofolate reductase HPY11_11680 PF12821 Threonine/Serine exporter, ThrE HPY11_11685 PF06738 Putative threonine/serine exporter HPY11_11690 PF01926 50S ribosome-binding GTPase HPY11_11690 PF01018 GTP1/OBG HPY11_11695 PF01016 Ribosomal L27 protein HPY11_11700 PF00829 Ribosomal prokaryotic L21 protein HPY11_11705 PF00348 Polyprenyl synthetase HPY11_11710 PF13520 Amino acid permease HPY11_11715 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HPY11_11715 PF00056 lactate/malate dehydrogenase, NAD binding domain HPY11_11720 PF01316 Arginine repressor, DNA binding domain HPY11_11720 PF02863 Arginine repressor, C-terminal domain HPY11_11725 PF16868 NMT1-like family HPY11_11735 PF00582 Universal stress protein family HPY11_11750 PF06877 Regulator of ribonuclease activity B HPY11_11760 PF01523 Putative modulator of DNA gyrase HPY11_11765 PF00795 Carbon-nitrogen hydrolase HPY11_11770 PF13502 AsmA-like C-terminal region HPY11_11770 PF13116 Protein of unknown function HPY11_11775 PF00575 S1 RNA binding domain HPY11_11775 PF10150 Ribonuclease E/G family HPY11_11780 PF02545 Maf-like protein HPY11_11785 PF04093 rod shape-determining protein MreD HPY11_11790 PF04085 rod shape-determining protein MreC HPY11_11825 PF00114 Pilin (bacterial filament) HPY11_11825 PF07963 Prokaryotic N-terminal methylation motif HPY11_11830 PF07963 Prokaryotic N-terminal methylation motif HPY11_11830 PF00114 Pilin (bacterial filament) HPY11_11840 PF00482 Type II secretion system (T2SS), protein F HPY11_11845 PF00437 Type II/IV secretion system protein HPY11_11855 PF01471 Putative peptidoglycan binding domain HPY11_11855 PF13401 AAA domain HPY11_11860 PF00263 Bacterial type II and III secretion system protein HPY11_11860 PF07660 Secretin and TonB N terminus short domain HPY11_11860 PF11741 AMIN domain HPY11_11860 PF03958 Bacterial type II/III secretion system short domain HPY11_11910 PF00266 Aminotransferase class-V HPY11_11915 PF00696 Amino acid kinase family HPY11_11915 PF01842 ACT domain HPY11_11920 PF02574 Homocysteine S-methyltransferase HPY11_11920 PF02965 Vitamin B12 dependent methionine synthase, activation domain HPY11_11920 PF00809 Pterin binding enzyme HPY11_11920 PF02607 B12 binding domain HPY11_11920 PF02310 B12 binding domain HPY11_11925 PF00999 Sodium/hydrogen exchanger family HPY11_11995 PF01507 Phosphoadenosine phosphosulfate reductase family HPY11_12005 PF00175 Oxidoreductase NAD-binding domain HPY11_12005 PF00258 Flavodoxin HPY11_12005 PF00667 FAD binding domain HPY11_12025 PF09583 Phage shock protein G (Phageshock_PspG) HPY11_12030 PF01207 Dihydrouridine synthase (Dus) HPY11_12035 PF01475 Ferric uptake regulator family HPY11_12045 PF12706 Beta-lactamase superfamily domain HPY11_12050 PF00342 Phosphoglucose isomerase HPY11_12055 PF01894 Uncharacterised protein family UPF0047 HPY11_12060 PF01168 Alanine racemase, N-terminal domain HPY11_12060 PF00842 Alanine racemase, C-terminal domain HPY11_12065 PF03796 DnaB-like helicase C terminal domain HPY11_12065 PF00772 DnaB-like helicase N terminal domain HPY11_12075 PF03948 Ribosomal protein L9, C-terminal domain HPY11_12075 PF01281 Ribosomal protein L9, N-terminal domain HPY11_12080 PF01084 Ribosomal protein S18 HPY11_12085 PF00436 Single-strand binding protein family HPY11_12090 PF01250 Ribosomal protein S6 HPY11_12095 PF00210 Ferritin-like domain HPY11_12100 PF04324 BFD-like [2Fe-2S] binding domain HPY11_12105 PF00009 Elongation factor Tu GTP binding domain HPY11_12105 PF03143 Elongation factor Tu C-terminal domain HPY11_12105 PF03144 Elongation factor Tu domain 2 HPY11_12110 PF03144 Elongation factor Tu domain 2 HPY11_12110 PF00009 Elongation factor Tu GTP binding domain HPY11_12110 PF03764 Elongation factor G, domain IV HPY11_12110 PF00679 Elongation factor G C-terminus HPY11_12110 PF14492 Elongation Factor G, domain II HPY11_12115 PF00177 Ribosomal protein S7p/S5e HPY11_12120 PF00164 Ribosomal protein S12/S23 HPY11_12130 PF02635 DsrE/DsrF-like family HPY11_12135 PF02635 DsrE/DsrF-like family HPY11_12140 PF08348 YheO-like PAS domain HPY11_12140 PF13309 HTH domain HPY11_12145 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY11_12145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY11_12155 PF04102 SlyX HPY11_12160 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HPY11_12165 PF01145 SPFH domain / Band 7 family HPY11_12170 PF12221 Bacterial membrane protein N terminal HPY11_12170 PF01145 SPFH domain / Band 7 family HPY11_12175 PF16360 GTP-binding GTPase Middle Region HPY11_12175 PF01926 50S ribosome-binding GTPase HPY11_12175 PF13167 GTP-binding GTPase N-terminal HPY11_12180 PF17209 Hfq protein HPY11_12190 PF08676 MutL C terminal dimerisation domain HPY11_12190 PF01119 DNA mismatch repair protein, C-terminal domain HPY11_12195 PF01520 N-acetylmuramoyl-L-alanine amidase HPY11_12200 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HPY11_12205 PF08331 Domain of unknown function (DUF1730) HPY11_12255 PF00929 Exonuclease HPY11_12260 PF03193 RsgA GTPase HPY11_12265 PF02666 Phosphatidylserine decarboxylase HPY11_12270 PF00939 Sodium:sulfate symporter transmembrane region HPY11_12280 PF01676 Metalloenzyme superfamily HPY11_12280 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HPY11_12285 PF01551 Peptidase family M23 HPY11_12295 PF08360 QacR-like protein, C-terminal region HPY11_12295 PF00440 Bacterial regulatory proteins, tetR family HPY11_12300 PF01208 Uroporphyrinogen decarboxylase (URO-D) HPY11_12305 PF09297 NADH pyrophosphatase zinc ribbon domain HPY11_12305 PF00293 NUDIX domain HPY11_12310 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HPY11_12315 PF04983 RNA polymerase Rpb1, domain 3 HPY11_12315 PF04997 RNA polymerase Rpb1, domain 1 HPY11_12315 PF00623 RNA polymerase Rpb1, domain 2 HPY11_12315 PF04998 RNA polymerase Rpb1, domain 5 HPY11_12315 PF05000 RNA polymerase Rpb1, domain 4 HPY11_12320 PF04560 RNA polymerase Rpb2, domain 7 HPY11_12320 PF04565 RNA polymerase Rpb2, domain 3 HPY11_12320 PF04563 RNA polymerase beta subunit HPY11_12320 PF04561 RNA polymerase Rpb2, domain 2 HPY11_12320 PF00562 RNA polymerase Rpb2, domain 6 HPY11_12320 PF10385 RNA polymerase beta subunit external 1 domain HPY11_12325 PF16320 Ribosomal protein L7/L12 dimerisation domain HPY11_12325 PF00542 Ribosomal protein L7/L12 C-terminal domain HPY11_12330 PF00466 Ribosomal protein L10 HPY11_12335 PF00687 Ribosomal protein L1p/L10e family HPY11_12340 PF00298 Ribosomal protein L11, RNA binding domain HPY11_12340 PF03946 Ribosomal protein L11, N-terminal domain HPY11_12345 PF02357 Transcription termination factor nusG HPY11_12345 PF00467 KOW motif HPY11_12350 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HPY11_12355 PF03144 Elongation factor Tu domain 2 HPY11_12355 PF00009 Elongation factor Tu GTP binding domain HPY11_12355 PF03143 Elongation factor Tu C-terminal domain HPY11_12380 PF00485 Phosphoribulokinase / Uridine kinase family HPY11_12385 PF08279 HTH domain HPY11_12385 PF03099 Biotin/lipoate A/B protein ligase family HPY11_12385 PF02237 Biotin protein ligase C terminal domain HPY11_12390 PF01565 FAD binding domain HPY11_12390 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HPY11_12400 PF13091 PLD-like domain HPY11_12435 PF00175 Oxidoreductase NAD-binding domain HPY11_12440 PF00175 Oxidoreductase NAD-binding domain HPY11_12440 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY11_12440 PF00970 Oxidoreductase FAD-binding domain HPY11_12445 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HPY11_12455 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY11_12455 PF07498 Rho termination factor, N-terminal domain HPY11_12455 PF07497 Rho termination factor, RNA-binding domain HPY11_12460 PF00085 Thioredoxin HPY11_12465 PF00270 DEAD/DEAH box helicase HPY11_12465 PF00271 Helicase conserved C-terminal domain HPY11_12470 PF02541 Ppx/GppA phosphatase family HPY11_12475 PF00072 Response regulator receiver domain HPY11_12475 PF09456 RcsC Alpha-Beta-Loop (ABL) HPY11_12475 PF00512 His Kinase A (phospho-acceptor) domain HPY11_12475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_12480 PF12832 MFS_1 like family HPY11_12495 PF00501 AMP-binding enzyme HPY11_12495 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY11_12495 PF13193 AMP-binding enzyme C-terminal domain HPY11_12500 PF01220 Dehydroquinase class II HPY11_12505 PF00364 Biotin-requiring enzyme HPY11_12510 PF02785 Biotin carboxylase C-terminal domain HPY11_12510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HPY11_12510 PF00289 Biotin carboxylase, N-terminal domain HPY11_12520 PF01207 Dihydrouridine synthase (Dus) HPY11_12525 PF02954 Bacterial regulatory protein, Fis family HPY11_12530 PF13784 Fic/DOC family N-terminal HPY11_12530 PF02661 Fic/DOC family HPY11_12535 PF00356 Bacterial regulatory proteins, lacI family HPY11_12535 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY11_12540 PF11647 Membrane Localization Domain HPY11_12545 PF00920 Dehydratase family HPY11_12550 PF01202 Shikimate kinase HPY11_12555 PF02447 GntP family permease HPY11_12560 PF01081 KDPG and KHG aldolase HPY11_12565 PF07715 TonB-dependent Receptor Plug Domain HPY11_12565 PF00593 TonB dependent receptor HPY11_12580 PF17200 Single Cache domain 2 HPY11_12580 PF00672 HAMP domain HPY11_12580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_12585 PF01276 Orn/Lys/Arg decarboxylase, major domain HPY11_12585 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HPY11_12585 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HPY11_12590 PF13520 Amino acid permease HPY11_12595 PF00486 Transcriptional regulatory protein, C terminal HPY11_12595 PF18500 CadC C-terminal domain 1 HPY11_12600 PF13411 MerR HTH family regulatory protein HPY11_12610 PF02142 MGS-like domain HPY11_12610 PF01808 AICARFT/IMPCHase bienzyme HPY11_12615 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HPY11_12615 PF02843 Phosphoribosylglycinamide synthetase, C domain HPY11_12615 PF02844 Phosphoribosylglycinamide synthetase, N domain HPY11_12625 PF00216 Bacterial DNA-binding protein HPY11_12630 PF00571 CBS domain HPY11_12630 PF01595 Cyclin M transmembrane N-terminal domain HPY11_12635 PF04222 Protein of unknown function (DUF416) HPY11_12640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY11_12645 PF03167 Uracil DNA glycosylase superfamily HPY11_12650 PF00924 Mechanosensitive ion channel HPY11_12655 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HPY11_12655 PF00753 Metallo-beta-lactamase superfamily HPY11_12655 PF10996 Beta-Casp domain HPY11_12665 PF00953 Glycosyl transferase family 4 HPY11_12670 PF00534 Glycosyl transferases group 1 HPY11_12670 PF13477 Glycosyl transferase 4-like HPY11_12685 PF02350 UDP-N-acetylglucosamine 2-epimerase HPY11_12690 PF00535 Glycosyl transferase family 2 HPY11_12705 PF00535 Glycosyl transferase family 2 HPY11_12715 PF02706 Chain length determinant protein HPY11_12715 PF13807 G-rich domain on putative tyrosine kinase HPY11_12715 PF13614 AAA domain HPY11_12720 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY11_12725 PF10531 SLBB domain HPY11_12725 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HPY11_12725 PF02563 Polysaccharide biosynthesis/export protein HPY11_12735 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF HPY11_12745 PF06082 Exopolysaccharide biosynthesis protein YbjH HPY11_12755 PF02397 Bacterial sugar transferase HPY11_12760 PF01370 NAD dependent epimerase/dehydratase family HPY11_12765 PF02719 Polysaccharide biosynthesis protein HPY11_12775 PF02350 UDP-N-acetylglucosamine 2-epimerase HPY11_12795 PF01209 ubiE/COQ5 methyltransferase family HPY11_12800 PF00005 ABC transporter HPY11_12810 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HPY11_12815 PF04321 RmlD substrate binding domain HPY11_12820 PF00483 Nucleotidyl transferase HPY11_12825 PF16363 GDP-mannose 4,6 dehydratase HPY11_12830 PF01370 NAD dependent epimerase/dehydratase family HPY11_12840 PF00535 Glycosyl transferase family 2 HPY11_12845 PF01522 Polysaccharide deacetylase HPY11_12845 PF00457 Glycosyl hydrolases family 11 HPY11_12850 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY11_12855 PF04488 Glycosyltransferase sugar-binding region containing DXD motif HPY11_12860 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HPY11_12865 PF00583 Acetyltransferase (GNAT) family HPY11_12870 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HPY11_12890 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY11_12895 PF00535 Glycosyl transferase family 2 HPY11_12900 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY11_12905 PF01467 Cytidylyltransferase-like HPY11_12910 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HPY11_12910 PF06827 Zinc finger found in FPG and IleRS HPY11_12910 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HPY11_12920 PF00471 Ribosomal protein L33 HPY11_12925 PF00830 Ribosomal L28 family HPY11_12930 PF04002 RadC-like JAB domain HPY11_12935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_12935 PF02743 Cache domain HPY11_12935 PF00672 HAMP domain HPY11_12940 PF02441 Flavoprotein HPY11_12940 PF04127 DNA / pantothenate metabolism flavoprotein HPY11_12950 PF00440 Bacterial regulatory proteins, tetR family HPY11_12955 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY11_12960 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY11_12965 PF00156 Phosphoribosyl transferase domain HPY11_12970 PF03725 3' exoribonuclease family, domain 2 HPY11_12970 PF01138 3' exoribonuclease family, domain 1 HPY11_12975 PF03755 YicC-like family, N-terminal region HPY11_12975 PF08340 Domain of unknown function (DUF1732) HPY11_13030 PF00145 C-5 cytosine-specific DNA methylase HPY11_13060 PF13411 MerR HTH family regulatory protein HPY11_13080 PF03350 Uncharacterized protein family, UPF0114 HPY11_13085 PF13006 Insertion element 4 transposase N-terminal HPY11_13085 PF01609 Transposase DDE domain HPY11_13090 PF00267 Gram-negative porin HPY11_13095 PF02378 Phosphotransferase system, EIIC HPY11_13095 PF00367 phosphotransferase system, EIIB HPY11_13100 PF13580 SIS domain HPY11_13105 PF01380 SIS domain HPY11_13105 PF01418 Helix-turn-helix domain, rpiR family HPY11_13115 PF00270 DEAD/DEAH box helicase HPY11_13115 PF09382 RQC domain HPY11_13115 PF00570 HRDC domain HPY11_13115 PF00271 Helicase conserved C-terminal domain HPY11_13115 PF16124 RecQ zinc-binding HPY11_13120 PF00892 EamA-like transporter family HPY11_13130 PF12833 Helix-turn-helix domain HPY11_13135 PF01810 LysE type translocator HPY11_13140 PF13361 UvrD-like helicase C-terminal domain HPY11_13140 PF00580 UvrD/REP helicase N-terminal domain HPY11_13145 PF01432 Peptidase family M3 HPY11_13150 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HPY11_13155 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY11_13155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY11_13165 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_13165 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY11_13175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY11_13180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY11_13180 PF00005 ABC transporter HPY11_13215 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY11_13255 PF00437 Type II/IV secretion system protein HPY11_13270 PF04972 BON domain HPY11_13270 PF00263 Bacterial type II and III secretion system protein HPY11_13270 PF13629 Pilus formation protein N terminal region HPY11_13300 PF13361 UvrD-like helicase C-terminal domain HPY11_13300 PF00580 UvrD/REP helicase N-terminal domain HPY11_13305 PF00440 Bacterial regulatory proteins, tetR family HPY11_13310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY11_13315 PF00873 AcrB/AcrD/AcrF family HPY11_13320 PF04380 Membrane fusogenic activity HPY11_13325 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HPY11_13325 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HPY11_13330 PF03466 LysR substrate binding domain HPY11_13330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_13395 PF12724 Flavodoxin domain HPY11_13400 PF02386 Cation transport protein HPY11_13405 PF09186 Domain of unknown function (DUF1949) HPY11_13405 PF01205 Uncharacterized protein family UPF0029 HPY11_13410 PF00378 Enoyl-CoA hydratase/isomerase HPY11_13410 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY11_13410 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY11_13415 PF00108 Thiolase, N-terminal domain HPY11_13415 PF02803 Thiolase, C-terminal domain HPY11_13420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_13420 PF03466 LysR substrate binding domain HPY11_13425 PF07690 Major Facilitator Superfamily HPY11_13430 PF00132 Bacterial transferase hexapeptide (six repeats) HPY11_13430 PF12804 MobA-like NTP transferase domain HPY11_13435 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HPY11_13435 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HPY11_13440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY11_13440 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY11_13445 PF00231 ATP synthase HPY11_13450 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY11_13450 PF00306 ATP synthase alpha/beta chain, C terminal domain HPY11_13450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY11_13455 PF00213 ATP synthase delta (OSCP) subunit HPY11_13460 PF00430 ATP synthase B/B' CF(0) HPY11_13465 PF00137 ATP synthase subunit C HPY11_13470 PF00119 ATP synthase A chain HPY11_13475 PF03899 ATP synthase I chain HPY11_13480 PF02195 ParB-like nuclease domain HPY11_13480 PF17762 HTH domain found in ParB protein HPY11_13485 PF13614 AAA domain HPY11_13490 PF02527 rRNA small subunit methyltransferase G HPY11_13495 PF01134 Glucose inhibited division protein A HPY11_13495 PF13932 GidA associated domain HPY11_13500 PF00258 Flavodoxin HPY11_13510 PF02796 Helix-turn-helix domain of resolvase HPY11_13510 PF00239 Resolvase, N terminal domain HPY11_13520 PF06616 BsuBI/PstI restriction endonuclease domain HPY11_13520 PF17728 BsuBI/PstI restriction endonuclease HTH domain HPY11_13560 PF06122 Conjugative relaxosome accessory transposon protein HPY11_13595 PF02899 Phage integrase, N-terminal SAM-like domain HPY11_13595 PF00589 Phage integrase family HPY11_13600 PF01926 50S ribosome-binding GTPase HPY11_13600 PF10396 GTP-binding protein TrmE N-terminus HPY11_13600 PF12631 MnmE helical domain HPY11_13605 PF02096 60Kd inner membrane protein HPY11_13605 PF14849 YidC periplasmic domain HPY11_13610 PF01809 Putative membrane protein insertion efficiency factor HPY11_13615 PF00825 Ribonuclease P HPY11_13620 PF00468 Ribosomal protein L34 HPY11_13625 PF00005 ABC transporter HPY11_13630 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_13635 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY11_13640 PF08775 ParB family HPY11_13640 PF02195 ParB-like nuclease domain HPY11_13645 PF18607 ParA helix turn helix domain HPY11_13645 PF13614 AAA domain HPY11_13670 PF01709 Transcriptional regulator HPY11_13675 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HPY11_13675 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY11_13680 PF17200 Single Cache domain 2 HPY11_13680 PF00672 HAMP domain HPY11_13680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_13685 PF10928 Protein of unknown function (DUF2810) HPY11_13690 PF00196 Bacterial regulatory proteins, luxR family HPY11_13690 PF17874 MalT-like TPR region HPY11_13695 PF00343 Carbohydrate phosphorylase HPY11_13700 PF02446 4-alpha-glucanotransferase HPY11_13705 PF00128 Alpha amylase, catalytic domain HPY11_13705 PF02806 Alpha amylase, C-terminal all-beta domain HPY11_13705 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY11_13710 PF05638 Type VI secretion system effector, Hcp HPY11_13715 PF16671 Actin cross-linking domain HPY11_13715 PF04717 Type VI secretion system, phage-baseplate injector HPY11_13725 PF01476 LysM domain HPY11_13740 PF01168 Alanine racemase, N-terminal domain HPY11_13740 PF00842 Alanine racemase, C-terminal domain HPY11_13740 PF01757 Acyltransferase family HPY11_13750 PF00939 Sodium:sulfate symporter transmembrane region HPY11_13755 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY11_13760 PF00704 Glycosyl hydrolases family 18 HPY11_13760 PF08329 Chitinase A, N-terminal domain HPY11_13785 PF01569 PAP2 superfamily HPY11_13790 PF02225 PA domain HPY11_13790 PF04389 Peptidase family M28 HPY11_13795 PF00375 Sodium:dicarboxylate symporter family HPY11_13805 PF02630 SCO1/SenC HPY11_13820 PF03616 Sodium/glutamate symporter HPY11_13825 PF07238 PilZ domain HPY11_13825 PF12945 Flagellar protein YcgR HPY11_13840 PF00529 HlyD membrane-fusion protein of T1SS HPY11_13840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY11_13845 PF11742 Protein of unknown function (DUF3302) HPY11_13850 PF00990 Diguanylate cyclase, GGDEF domain HPY11_13865 PF01048 Phosphorylase superfamily HPY11_13870 PF08349 Protein of unknown function (DUF1722) HPY11_13875 PF13411 MerR HTH family regulatory protein HPY11_13880 PF03441 FAD binding domain of DNA photolyase HPY11_13880 PF00875 DNA photolyase HPY11_13885 PF01476 LysM domain HPY11_13885 PF17969 L,D-transpeptidase C-terminal domain HPY11_13885 PF03734 L,D-transpeptidase catalytic domain HPY11_13895 PF00271 Helicase conserved C-terminal domain HPY11_13895 PF00270 DEAD/DEAH box helicase HPY11_13900 PF00326 Prolyl oligopeptidase family HPY11_13900 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HPY11_13905 PF07715 TonB-dependent Receptor Plug Domain HPY11_13905 PF00593 TonB dependent receptor HPY11_13925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_13925 PF12729 Four helix bundle sensory module for signal transduction HPY11_13925 PF00672 HAMP domain HPY11_13930 PF12849 PBP superfamily domain HPY11_13935 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_13940 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_13945 PF00005 ABC transporter HPY11_13950 PF00990 Diguanylate cyclase, GGDEF domain HPY11_13950 PF00072 Response regulator receiver domain HPY11_13965 PF01740 STAS domain HPY11_13965 PF00916 Sulfate permease family HPY11_13975 PF01551 Peptidase family M23 HPY11_13975 PF01476 LysM domain HPY11_13975 PF08525 Opacity-associated protein A N-terminal motif HPY11_13980 PF00990 Diguanylate cyclase, GGDEF domain HPY11_13980 PF03707 Bacterial signalling protein N terminal repeat HPY11_13980 PF00563 EAL domain HPY11_13980 PF13188 PAS domain HPY11_13985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_13985 PF03466 LysR substrate binding domain HPY11_13990 PF07690 Major Facilitator Superfamily HPY11_13995 PF09278 MerR, DNA binding HPY11_13995 PF00376 MerR family regulatory protein HPY11_14010 PF00375 Sodium:dicarboxylate symporter family HPY11_14025 PF02001 Protein of unknown function DUF134 HPY11_14045 PF01483 Proprotein convertase P-domain HPY11_14045 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY11_14045 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY11_14045 PF01447 Thermolysin metallopeptidase, catalytic domain HPY11_14055 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HPY11_14055 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HPY11_14060 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HPY11_14060 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY11_14065 PF00581 Rhodanese-like domain HPY11_14070 PF00196 Bacterial regulatory proteins, luxR family HPY11_14070 PF00563 EAL domain HPY11_14075 PF13419 Haloacid dehalogenase-like hydrolase HPY11_14080 PF01740 STAS domain HPY11_14080 PF00916 Sulfate permease family HPY11_14085 PF00849 RNA pseudouridylate synthase HPY11_14145 PF17871 AAA lid domain HPY11_14145 PF10431 C-terminal, D2-small domain, of ClpB protein HPY11_14145 PF00004 ATPase family associated with various cellular activities (AAA) HPY11_14145 PF07724 AAA domain (Cdc48 subfamily) HPY11_14190 PF05025 RbsD / FucU transport protein family HPY11_14195 PF00005 ABC transporter HPY11_14200 PF02653 Branched-chain amino acid transport system / permease component HPY11_14205 PF13407 Periplasmic binding protein domain HPY11_14210 PF00294 pfkB family carbohydrate kinase HPY11_14215 PF00356 Bacterial regulatory proteins, lacI family HPY11_14220 PF04973 Nicotinamide mononucleotide transporter HPY11_14225 PF01048 Phosphorylase superfamily HPY11_14235 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY11_14240 PF07690 Major Facilitator Superfamily HPY11_14255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_14255 PF00512 His Kinase A (phospho-acceptor) domain HPY11_14255 PF02743 Cache domain HPY11_14260 PF02954 Bacterial regulatory protein, Fis family HPY11_14260 PF00072 Response regulator receiver domain HPY11_14260 PF00158 Sigma-54 interaction domain HPY11_14275 PF01266 FAD dependent oxidoreductase HPY11_14280 PF12561 ToxR activated gene A lipoprotein domain HPY11_14280 PF00041 Fibronectin type III domain HPY11_14285 PF01327 Polypeptide deformylase HPY11_14290 PF00042 Globin HPY11_14290 PF00970 Oxidoreductase FAD-binding domain HPY11_14290 PF00175 Oxidoreductase NAD-binding domain HPY11_14295 PF03334 Na+/H+ antiporter subunit HPY11_14300 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) HPY11_14320 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY11_14320 PF00361 Proton-conducting membrane transporter HPY11_14320 PF13244 Domain of unknown function (DUF4040) HPY11_14320 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter HPY11_14330 PF00582 Universal stress protein family HPY11_14335 PF03222 Tryptophan/tyrosine permease family HPY11_14340 PF01212 Beta-eliminating lyase HPY11_14350 PF12843 Putative quorum-sensing-regulated virulence factor HPY11_14360 PF00563 EAL domain HPY11_14360 PF00990 Diguanylate cyclase, GGDEF domain HPY11_14360 PF08448 PAS fold HPY11_14365 PF00313 'Cold-shock' DNA-binding domain HPY11_14380 PF07584 Aerotolerance regulator N-terminal HPY11_14380 PF13519 von Willebrand factor type A domain HPY11_14395 PF01882 Protein of unknown function DUF58 HPY11_14400 PF07726 ATPase family associated with various cellular activities (AAA) HPY11_14400 PF17863 AAA lid domain HPY11_14405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_14405 PF00672 HAMP domain HPY11_14405 PF02743 Cache domain HPY11_14420 PF07670 Nucleoside recognition HPY11_14420 PF01773 Na+ dependent nucleoside transporter N-terminus HPY11_14420 PF07662 Na+ dependent nucleoside transporter C-terminus HPY11_14425 PF01546 Peptidase family M20/M25/M40 HPY11_14425 PF07687 Peptidase dimerisation domain HPY11_14435 PF01590 GAF domain HPY11_14435 PF00158 Sigma-54 interaction domain HPY11_14440 PF00175 Oxidoreductase NAD-binding domain HPY11_14440 PF00970 Oxidoreductase FAD-binding domain HPY11_14440 PF00042 Globin HPY11_14445 PF00313 'Cold-shock' DNA-binding domain HPY11_14450 PF03889 Alternative ribosome-rescue factor A HPY11_14465 PF00072 Response regulator receiver domain HPY11_14475 PF03853 YjeF-related protein N-terminus HPY11_14475 PF01256 Carbohydrate kinase HPY11_14480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY11_14480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY11_14490 PF07885 Ion channel HPY11_14500 PF00478 IMP dehydrogenase / GMP reductase domain HPY11_14505 PF00145 C-5 cytosine-specific DNA methylase HPY11_14525 PF00270 DEAD/DEAH box helicase HPY11_14525 PF00271 Helicase conserved C-terminal domain HPY11_14530 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY11_14535 PF02540 NAD synthase HPY11_14540 PF01467 Cytidylyltransferase-like HPY11_14545 PF11849 Domain of unknown function (DUF3369) HPY11_14550 PF00512 His Kinase A (phospho-acceptor) domain HPY11_14550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_14550 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY11_14560 PF03553 Na+/H+ antiporter family HPY11_14565 PF07690 Major Facilitator Superfamily HPY11_14575 PF05230 MASE2 domain HPY11_14575 PF00990 Diguanylate cyclase, GGDEF domain HPY11_14580 PF00657 GDSL-like Lipase/Acylhydrolase HPY11_14585 PF07968 Leukocidin/Hemolysin toxin family HPY11_14585 PF16458 Beta-prism lectin HPY11_14585 PF12563 Hemolytic toxin N terminal HPY11_14595 PF00561 alpha/beta hydrolase fold HPY11_14600 PF03280 Proteobacterial lipase chaperone protein HPY11_14605 PF05547 Immune inhibitor A peptidase M6 HPY11_14605 PF00801 PKD domain HPY11_14625 PF01032 FecCD transport family HPY11_14630 PF01032 FecCD transport family HPY11_14635 PF00005 ABC transporter HPY11_14640 PF12833 Helix-turn-helix domain HPY11_14645 PF00593 TonB dependent receptor HPY11_14645 PF07715 TonB-dependent Receptor Plug Domain HPY11_14655 PF00871 Acetokinase family HPY11_14670 PF00005 ABC transporter HPY11_14680 PF01032 FecCD transport family HPY11_14690 PF03466 LysR substrate binding domain HPY11_14690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_14700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_14700 PF00512 His Kinase A (phospho-acceptor) domain HPY11_14700 PF00672 HAMP domain HPY11_14705 PF00072 Response regulator receiver domain HPY11_14705 PF00486 Transcriptional regulatory protein, C terminal HPY11_14715 PF01261 Xylose isomerase-like TIM barrel HPY11_14720 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY11_14730 PF00596 Class II Aldolase and Adducin N-terminal domain HPY11_14735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY11_14740 PF03611 PTS system sugar-specific permease component HPY11_14745 PF08220 DeoR-like helix-turn-helix domain HPY11_14745 PF00455 DeoR C terminal sensor domain HPY11_14760 PF00128 Alpha amylase, catalytic domain HPY11_14765 PF00132 Bacterial transferase hexapeptide (six repeats) HPY11_14780 PF00486 Transcriptional regulatory protein, C terminal HPY11_14780 PF00072 Response regulator receiver domain HPY11_14825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_14825 PF00672 HAMP domain HPY11_14825 PF02743 Cache domain HPY11_14830 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY11_14835 PF07943 Penicillin-binding protein 5, C-terminal domain HPY11_14835 PF00768 D-alanyl-D-alanine carboxypeptidase HPY11_14850 PF00194 Eukaryotic-type carbonic anhydrase HPY11_14855 PF02347 Glycine cleavage system P-protein HPY11_14860 PF01597 Glycine cleavage H-protein HPY11_14865 PF00464 Serine hydroxymethyltransferase HPY11_14875 PF08669 Glycine cleavage T-protein C-terminal barrel domain HPY11_14875 PF01571 Aminomethyltransferase folate-binding domain HPY11_14880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY11_14880 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY11_14880 PF03129 Anticodon binding domain HPY11_14880 PF02824 TGS domain HPY11_14885 PF00707 Translation initiation factor IF-3, C-terminal domain HPY11_14885 PF05198 Translation initiation factor IF-3, N-terminal domain HPY11_14890 PF01632 Ribosomal protein L35 HPY11_14895 PF00453 Ribosomal protein L20 HPY11_14900 PF13495 Phage integrase, N-terminal SAM-like domain HPY11_14900 PF00589 Phage integrase family HPY11_14970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY11_15065 PF00132 Bacterial transferase hexapeptide (six repeats) HPY11_15295 PF02798 Glutathione S-transferase, N-terminal domain HPY11_15295 PF00043 Glutathione S-transferase, C-terminal domain HPY11_15360 PF02567 Phenazine biosynthesis-like protein HPY11_15365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY11_15415 PF13302 Acetyltransferase (GNAT) domain HPY11_15540 PF13302 Acetyltransferase (GNAT) domain HPY11_15705 PF08212 Lipocalin-like domain HPY11_15720 PF04229 GrpB protein HPY11_15735 PF00561 alpha/beta hydrolase fold HPY11_15795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY11_15870 PF00583 Acetyltransferase (GNAT) family HPY11_15915 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY11_15915 PF01872 RibD C-terminal domain HPY11_15920 PF00293 NUDIX domain HPY11_15960 PF17676 LD-carboxypeptidase C-terminal domain HPY11_15960 PF02016 LD-carboxypeptidase N-terminal domain HPY11_15995 PF02567 Phenazine biosynthesis-like protein HPY11_16145 PF02016 LD-carboxypeptidase N-terminal domain HPY11_16145 PF17676 LD-carboxypeptidase C-terminal domain HPY11_16170 PF02567 Phenazine biosynthesis-like protein HPY11_16180 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system HPY11_16185 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA HPY11_16250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY11_16280 PF07859 alpha/beta hydrolase fold HPY11_16285 PF02567 Phenazine biosynthesis-like protein HPY11_16310 PF09722 Protein of unknown function (DUF2384) HPY11_16315 PF02567 Phenazine biosynthesis-like protein HPY11_16335 PF00293 NUDIX domain HPY11_16340 PF04229 GrpB protein HPY11_16350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY11_16350 PF01872 RibD C-terminal domain HPY11_16380 PF08212 Lipocalin-like domain HPY11_16430 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY11_16430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY11_16435 PF05736 OprF membrane domain HPY11_16435 PF00691 OmpA family HPY11_16440 PF00672 HAMP domain HPY11_16440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_16445 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HPY11_16445 PF01266 FAD dependent oxidoreductase HPY11_16450 PF00294 pfkB family carbohydrate kinase HPY11_16455 PF00251 Glycosyl hydrolases family 32 N-terminal domain HPY11_16455 PF08244 Glycosyl hydrolases family 32 C terminal HPY11_16465 PF00367 phosphotransferase system, EIIB HPY11_16465 PF02378 Phosphotransferase system, EIIC HPY11_16510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY11_16510 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY11_16525 PF04143 Sulphur transport HPY11_16540 PF00873 AcrB/AcrD/AcrF family HPY11_16545 PF00881 Nitroreductase family HPY11_16550 PF03992 Antibiotic biosynthesis monooxygenase HPY11_16555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_16555 PF03466 LysR substrate binding domain HPY11_16565 PF06942 GlpM protein HPY11_16580 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY11_16580 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY11_16600 PF01609 Transposase DDE domain HPY11_16600 PF14706 Transposase DNA-binding HPY11_16600 PF02281 Transposase Tn5 dimerisation domain HPY11_16610 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY11_16610 PF04151 Bacterial pre-peptidase C-terminal domain HPY11_16610 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY11_16610 PF01447 Thermolysin metallopeptidase, catalytic domain HPY11_16610 PF03413 Peptidase propeptide and YPEB domain HPY11_16615 PF02779 Transketolase, pyrimidine binding domain HPY11_16615 PF00456 Transketolase, thiamine diphosphate binding domain HPY11_16615 PF02780 Transketolase, C-terminal domain HPY11_16620 PF00923 Transaldolase/Fructose-6-phosphate aldolase HPY11_16625 PF04198 Putative sugar-binding domain HPY11_16630 PF00704 Glycosyl hydrolases family 18 HPY11_16630 PF08329 Chitinase A, N-terminal domain HPY11_16635 PF00581 Rhodanese-like domain HPY11_16645 PF00899 ThiF family HPY11_16650 PF00994 Probable molybdopterin binding domain HPY11_16650 PF03454 MoeA C-terminal region (domain IV) HPY11_16650 PF03453 MoeA N-terminal region (domain I and II) HPY11_16655 PF01227 GTP cyclohydrolase I HPY11_16660 PF01641 SelR domain HPY11_16660 PF01625 Peptide methionine sulfoxide reductase HPY11_16665 PF01268 Formate--tetrahydrofolate ligase HPY11_16670 PF01741 Large-conductance mechanosensitive channel, MscL HPY11_16685 PF13419 Haloacid dehalogenase-like hydrolase HPY11_16690 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY11_16690 PF14760 Rnk N-terminus HPY11_16695 PF13419 Haloacid dehalogenase-like hydrolase HPY11_16705 PF00266 Aminotransferase class-V HPY11_16715 PF00005 ABC transporter HPY11_16720 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_16725 PF00392 Bacterial regulatory proteins, gntR family HPY11_16725 PF07702 UTRA domain HPY11_16735 PF00854 POT family HPY11_16760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY11_16765 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_16770 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_16770 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY11_16775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY11_16775 PF00005 ABC transporter HPY11_16780 PF00132 Bacterial transferase hexapeptide (six repeats) HPY11_16780 PF03479 Plants and Prokaryotes Conserved (PCC) domain HPY11_16780 PF12804 MobA-like NTP transferase domain HPY11_16795 PF00043 Glutathione S-transferase, C-terminal domain HPY11_16795 PF02798 Glutathione S-transferase, N-terminal domain HPY11_16815 PF03061 Thioesterase superfamily HPY11_16830 PF12793 Sugar transport-related sRNA regulator N-term HPY11_16830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY11_16835 PF07715 TonB-dependent Receptor Plug Domain HPY11_16835 PF00593 TonB dependent receptor HPY11_16835 PF04886 PT repeat HPY11_16840 PF03466 LysR substrate binding domain HPY11_16840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_16845 PF00583 Acetyltransferase (GNAT) family HPY11_16845 PF13380 CoA binding domain HPY11_16845 PF13607 Succinyl-CoA ligase like flavodoxin domain HPY11_16855 PF07478 D-ala D-ala ligase C-terminus HPY11_16855 PF01820 D-ala D-ala ligase N-terminus HPY11_16865 PF01253 Translation initiation factor SUI1 HPY11_16920 PF03701 Uncharacterised protein family (UPF0181) HPY11_16935 PF00486 Transcriptional regulatory protein, C terminal HPY11_16935 PF00072 Response regulator receiver domain HPY11_16945 PF02233 NAD(P) transhydrogenase beta subunit HPY11_16950 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HPY11_16950 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY11_16950 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY11_16965 PF17158 Membrane-associated sensor, integral membrane domain HPY11_16965 PF00990 Diguanylate cyclase, GGDEF domain HPY11_16985 PF00990 Diguanylate cyclase, GGDEF domain HPY11_16985 PF17151 Periplasmic sensor domain HPY11_17020 PF08274 PhnA Zinc-Ribbon HPY11_17020 PF03831 PhnA domain HPY11_17025 PF13006 Insertion element 4 transposase N-terminal HPY11_17025 PF01609 Transposase DDE domain HPY11_17035 PF03741 Integral membrane protein TerC family HPY11_17040 PF02872 5'-nucleotidase, C-terminal domain HPY11_17040 PF00149 Calcineurin-like phosphoesterase HPY11_17045 PF11398 Protein of unknown function (DUF2813) HPY11_17050 PF06496 Protein of unknown function (DUF1097) HPY11_17055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_17055 PF03466 LysR substrate binding domain HPY11_17060 PF01226 Formate/nitrite transporter HPY11_17065 PF04264 YceI-like domain HPY11_17070 PF01292 Prokaryotic cytochrome b561 HPY11_17080 PF10388 EAL-domain associated signalling protein domain HPY11_17080 PF00563 EAL domain HPY11_17095 PF02416 mttA/Hcf106 family HPY11_17100 PF00072 Response regulator receiver domain HPY11_17100 PF00486 Transcriptional regulatory protein, C terminal HPY11_17105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_17105 PF02702 Osmosensitive K+ channel His kinase sensor domain HPY11_17105 PF00512 His Kinase A (phospho-acceptor) domain HPY11_17105 PF13493 Domain of unknown function (DUF4118) HPY11_17110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY11_17110 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HPY11_17110 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HPY11_17110 PF10371 Domain of unknown function HPY11_17110 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HPY11_17115 PF02705 K+ potassium transporter HPY11_17120 PF01926 50S ribosome-binding GTPase HPY11_17125 PF07683 Cobalamin synthesis protein cobW C-terminal domain HPY11_17125 PF02492 CobW/HypB/UreG, nucleotide-binding domain HPY11_17130 PF00654 Voltage gated chloride channel HPY11_17140 PF00155 Aminotransferase class I and II HPY11_17145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_17145 PF00072 Response regulator receiver domain HPY11_17150 PF13476 AAA domain HPY11_17155 PF12320 Type 5 capsule protein repressor C-terminal domain HPY11_17155 PF00149 Calcineurin-like phosphoesterase HPY11_17160 PF00356 Bacterial regulatory proteins, lacI family HPY11_17160 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY11_17165 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY11_17165 PF00381 PTS HPr component phosphorylation site HPY11_17170 PF00294 pfkB family carbohydrate kinase HPY11_17175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY11_17175 PF02378 Phosphotransferase system, EIIC HPY11_17180 PF18030 RimK PreATP-grasp domain HPY11_17180 PF08443 RimK-like ATP-grasp domain HPY11_17185 PF00155 Aminotransferase class I and II HPY11_17195 PF13597 Anaerobic ribonucleoside-triphosphate reductase HPY11_17195 PF03477 ATP cone domain HPY11_17205 PF13419 Haloacid dehalogenase-like hydrolase HPY11_17210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_17210 PF00672 HAMP domain HPY11_17210 PF12729 Four helix bundle sensory module for signal transduction HPY11_17215 PF03606 C4-dicarboxylate anaerobic carrier HPY11_17220 PF03315 Serine dehydratase beta chain HPY11_17220 PF03313 Serine dehydratase alpha chain HPY11_17225 PF00196 Bacterial regulatory proteins, luxR family HPY11_17225 PF00072 Response regulator receiver domain HPY11_17230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_17230 PF07730 Histidine kinase HPY11_17230 PF00672 HAMP domain HPY11_17230 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HPY11_17235 PF13187 4Fe-4S dicluster domain HPY11_17235 PF12838 4Fe-4S dicluster domain HPY11_17245 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY11_17245 PF00384 Molybdopterin oxidoreductase HPY11_17245 PF01568 Molydopterin dinucleotide binding domain HPY11_17250 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HPY11_17255 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY11_17265 PF01966 HD domain HPY11_17270 PF00072 Response regulator receiver domain HPY11_17270 PF00196 Bacterial regulatory proteins, luxR family HPY11_17275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_17275 PF07730 Histidine kinase HPY11_17275 PF05231 MASE1 HPY11_17280 PF07690 Major Facilitator Superfamily HPY11_17290 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_17295 PF08402 TOBE domain HPY11_17295 PF00005 ABC transporter HPY11_17300 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HPY11_17310 PF00108 Thiolase, N-terminal domain HPY11_17310 PF02803 Thiolase, C-terminal domain HPY11_17315 PF00106 short chain dehydrogenase HPY11_17320 PF02355 Protein export membrane protein HPY11_17320 PF07549 SecD/SecF GG Motif HPY11_17325 PF07549 SecD/SecF GG Motif HPY11_17325 PF13721 SecD export protein N-terminal TM region HPY11_17325 PF02355 Protein export membrane protein HPY11_17340 PF17158 Membrane-associated sensor, integral membrane domain HPY11_17340 PF00990 Diguanylate cyclase, GGDEF domain HPY11_17345 PF00483 Nucleotidyl transferase HPY11_17350 PF06483 Chitinase C HPY11_17350 PF00704 Glycosyl hydrolases family 18 HPY11_17355 PF00465 Iron-containing alcohol dehydrogenase HPY11_17365 PF14532 Sigma-54 interaction domain HPY11_17365 PF00072 Response regulator receiver domain HPY11_17365 PF02954 Bacterial regulatory protein, Fis family HPY11_17370 PF00512 His Kinase A (phospho-acceptor) domain HPY11_17370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_17370 PF02743 Cache domain HPY11_17380 PF07690 Major Facilitator Superfamily HPY11_17385 PF02887 Pyruvate kinase, alpha/beta domain HPY11_17385 PF00224 Pyruvate kinase, barrel domain HPY11_17390 PF00072 Response regulator receiver domain HPY11_17390 PF01627 Hpt domain HPY11_17390 PF00512 His Kinase A (phospho-acceptor) domain HPY11_17390 PF00672 HAMP domain HPY11_17390 PF17149 Periplasmic sensor domain found in signal transduction proteins HPY11_17390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_17395 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY11_17400 PF02142 MGS-like domain HPY11_17405 PF00857 Isochorismatase family HPY11_17410 PF01219 Prokaryotic diacylglycerol kinase HPY11_17415 PF00580 UvrD/REP helicase N-terminal domain HPY11_17415 PF13361 UvrD-like helicase C-terminal domain HPY11_17415 PF12462 DNA helicase IV / RNA helicase N terminal HPY11_17420 PF12805 FUSC-like inner membrane protein yccS HPY11_17425 PF08448 PAS fold HPY11_17425 PF13188 PAS domain HPY11_17425 PF00512 His Kinase A (phospho-acceptor) domain HPY11_17425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_17425 PF00072 Response regulator receiver domain HPY11_17450 PF00005 ABC transporter HPY11_17450 PF03459 TOBE domain HPY11_17455 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_17465 PF07685 CobB/CobQ-like glutamine amidotransferase domain HPY11_17465 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY11_17510 PF07715 TonB-dependent Receptor Plug Domain HPY11_17510 PF00593 TonB dependent receptor HPY11_17515 PF07690 Major Facilitator Superfamily HPY11_17520 PF00550 Phosphopantetheine attachment site HPY11_17520 PF00668 Condensation domain HPY11_17520 PF08242 Methyltransferase domain HPY11_17520 PF00501 AMP-binding enzyme HPY11_17525 PF00550 Phosphopantetheine attachment site HPY11_17525 PF00668 Condensation domain HPY11_17525 PF13193 AMP-binding enzyme C-terminal domain HPY11_17525 PF00501 AMP-binding enzyme HPY11_17540 PF00425 chorismate binding enzyme HPY11_17545 PF00501 AMP-binding enzyme HPY11_17545 PF13193 AMP-binding enzyme C-terminal domain HPY11_17550 PF02028 BCCT, betaine/carnitine/choline family transporter HPY11_17555 PF13977 BetI-type transcriptional repressor, C-terminal HPY11_17555 PF00440 Bacterial regulatory proteins, tetR family HPY11_17560 PF00171 Aldehyde dehydrogenase family HPY11_17565 PF00732 GMC oxidoreductase HPY11_17565 PF05199 GMC oxidoreductase HPY11_17570 PF00005 ABC transporter HPY11_17570 PF00664 ABC transporter transmembrane region HPY11_17575 PF00005 ABC transporter HPY11_17575 PF00664 ABC transporter transmembrane region HPY11_17585 PF09308 LuxQ, periplasmic HPY11_17585 PF00512 His Kinase A (phospho-acceptor) domain HPY11_17585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_17585 PF00072 Response regulator receiver domain HPY11_17590 PF13407 Periplasmic binding protein domain HPY11_17600 PF01541 GIY-YIG catalytic domain HPY11_17605 PF04337 Protein of unknown function, DUF480 HPY11_17615 PF04363 Protein of unknown function (DUF496) HPY11_17625 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HPY11_17625 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HPY11_17630 PF00230 Major intrinsic protein HPY11_17635 PF04324 BFD-like [2Fe-2S] binding domain HPY11_17635 PF01266 FAD dependent oxidoreductase HPY11_17640 PF00890 FAD binding domain HPY11_17645 PF13183 4Fe-4S dicluster domain HPY11_17645 PF02754 Cysteine-rich domain HPY11_17650 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY11_17650 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY11_17655 PF00085 Thioredoxin HPY11_17660 PF07690 Major Facilitator Superfamily HPY11_17680 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_17685 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_17690 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY11_17695 PF00005 ABC transporter HPY11_17705 PF05762 VWA domain containing CoxE-like protein HPY11_17710 PF07728 AAA domain (dynein-related subfamily) HPY11_17710 PF12592 Protein of unknown function (DUF3763) HPY11_17710 PF17868 AAA lid domain HPY11_17715 PF00293 NUDIX domain HPY11_17720 PF01212 Beta-eliminating lyase HPY11_17725 PF00034 Cytochrome c HPY11_17730 PF08361 MAATS-type transcriptional repressor, C-terminal region HPY11_17730 PF00440 Bacterial regulatory proteins, tetR family HPY11_17735 PF00270 DEAD/DEAH box helicase HPY11_17735 PF00271 Helicase conserved C-terminal domain HPY11_17740 PF04336 Acyl carrier protein phosphodiesterase HPY11_17745 PF03222 Tryptophan/tyrosine permease family HPY11_17750 PF00672 HAMP domain HPY11_17750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_17750 PF12729 Four helix bundle sensory module for signal transduction HPY11_17755 PF16363 GDP-mannose 4,6 dehydratase HPY11_17760 PF03746 LamB/YcsF family HPY11_17770 PF02626 Carboxyltransferase domain, subdomain A and B HPY11_17780 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY11_17780 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY11_17790 PF00005 ABC transporter HPY11_17795 PF13472 GDSL-like Lipase/Acylhydrolase family HPY11_17800 PF07055 Enoyl reductase FAD binding domain HPY11_17800 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY11_17800 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY11_17805 PF00563 EAL domain HPY11_17805 PF00498 FHA domain HPY11_17805 PF00990 Diguanylate cyclase, GGDEF domain HPY11_17815 PF00684 DnaJ central domain HPY11_17815 PF01556 DnaJ C terminal domain HPY11_17815 PF00226 DnaJ domain HPY11_17830 PF13419 Haloacid dehalogenase-like hydrolase HPY11_17845 PF00294 pfkB family carbohydrate kinase HPY11_17850 PF00884 Sulfatase HPY11_17860 PF03880 DbpA RNA binding domain HPY11_17860 PF00270 DEAD/DEAH box helicase HPY11_17860 PF00271 Helicase conserved C-terminal domain HPY11_17865 PF08206 Ribonuclease B OB domain HPY11_17865 PF00773 RNB domain HPY11_17865 PF00575 S1 RNA binding domain HPY11_17875 PF12849 PBP superfamily domain HPY11_17880 PF01575 MaoC like domain HPY11_17885 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HPY11_17890 PF18416 N-acetylglucosamine binding protein domain 2 HPY11_17890 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HPY11_17895 PF01447 Thermolysin metallopeptidase, catalytic domain HPY11_17895 PF04151 Bacterial pre-peptidase C-terminal domain HPY11_17895 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY11_17895 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY11_17895 PF03413 Peptidase propeptide and YPEB domain HPY11_17900 PF04151 Bacterial pre-peptidase C-terminal domain HPY11_17900 PF04389 Peptidase family M28 HPY11_17905 PF00491 Arginase family HPY11_17910 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY11_17910 PF17944 Arginine decarboxylase C-terminal helical extension HPY11_17910 PF17810 Arginine decarboxylase helical bundle domain HPY11_17920 PF03448 MgtE intracellular N domain HPY11_17920 PF00571 CBS domain HPY11_17920 PF01769 Divalent cation transporter HPY11_17930 PF00696 Amino acid kinase family HPY11_17930 PF13840 ACT domain HPY11_17940 PF01329 Pterin 4 alpha carbinolamine dehydratase HPY11_17945 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HPY11_17950 PF00501 AMP-binding enzyme HPY11_17950 PF13193 AMP-binding enzyme C-terminal domain HPY11_17970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_17970 PF03466 LysR substrate binding domain HPY11_17980 PF00892 EamA-like transporter family HPY11_17985 PF00132 Bacterial transferase hexapeptide (six repeats) HPY11_17985 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal HPY11_17985 PF14602 Hexapeptide repeat of succinyl-transferase HPY11_17990 PF03471 Transporter associated domain HPY11_17990 PF01595 Cyclin M transmembrane N-terminal domain HPY11_17990 PF00571 CBS domain HPY11_17995 PF02566 OsmC-like protein HPY11_18000 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY11_18005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY11_18005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY11_18020 PF13520 Amino acid permease HPY11_18025 PF00990 Diguanylate cyclase, GGDEF domain HPY11_18035 PF00248 Aldo/keto reductase family HPY11_18040 PF00128 Alpha amylase, catalytic domain HPY11_18050 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY11_18055 PF12262 Bacterial virulence factor lipase N-terminal HPY11_18060 PF08447 PAS fold HPY11_18060 PF13426 PAS domain HPY11_18060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_18065 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY11_18065 PF03413 Peptidase propeptide and YPEB domain HPY11_18065 PF01447 Thermolysin metallopeptidase, catalytic domain HPY11_18065 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY11_18065 PF04151 Bacterial pre-peptidase C-terminal domain HPY11_18070 PF03922 OmpW family HPY11_18080 PF00768 D-alanyl-D-alanine carboxypeptidase HPY11_18085 PF17876 Cold shock domain HPY11_18085 PF08461 Ribonuclease R winged-helix domain HPY11_18085 PF08206 Ribonuclease B OB domain HPY11_18085 PF00773 RNB domain HPY11_18085 PF00575 S1 RNA binding domain HPY11_18090 PF00313 'Cold-shock' DNA-binding domain HPY11_18100 PF00291 Pyridoxal-phosphate dependent enzyme HPY11_18105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_18105 PF03466 LysR substrate binding domain HPY11_18115 PF01979 Amidohydrolase family HPY11_18130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_18130 PF00512 His Kinase A (phospho-acceptor) domain HPY11_18130 PF00989 PAS fold HPY11_18130 PF00672 HAMP domain HPY11_18135 PF00486 Transcriptional regulatory protein, C terminal HPY11_18135 PF00072 Response regulator receiver domain HPY11_18155 PF12167 Arm DNA-binding domain HPY11_18155 PF00589 Phage integrase family HPY11_18170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_18170 PF03466 LysR substrate binding domain HPY11_18175 PF08240 Alcohol dehydrogenase GroES-like domain HPY11_18175 PF00107 Zinc-binding dehydrogenase HPY11_18180 PF00155 Aminotransferase class I and II HPY11_18185 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY11_18190 PF03466 LysR substrate binding domain HPY11_18190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_18195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY11_18220 PF01966 HD domain HPY11_18225 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HPY11_18225 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HPY11_18230 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HPY11_18235 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HPY11_18235 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY11_18260 PF02595 Glycerate kinase family HPY11_18265 PF02447 GntP family permease HPY11_18270 PF13556 PucR C-terminal helix-turn-helix domain HPY11_18270 PF17853 GGDEF-like domain HPY11_18270 PF05651 Putative sugar diacid recognition HPY11_18275 PF00672 HAMP domain HPY11_18275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_18280 PF01243 Pyridoxamine 5'-phosphate oxidase HPY11_18285 PF06228 Haem utilisation ChuX/HutX HPY11_18290 PF04055 Radical SAM superfamily HPY11_18295 PF03544 Gram-negative bacterial TonB protein C-terminal HPY11_18300 PF01618 MotA/TolQ/ExbB proton channel family HPY11_18305 PF02472 Biopolymer transport protein ExbD/TolR HPY11_18310 PF01497 Periplasmic binding protein HPY11_18315 PF01032 FecCD transport family HPY11_18320 PF00005 ABC transporter HPY11_18350 PF02743 Cache domain HPY11_18350 PF00672 HAMP domain HPY11_18350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_18355 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY11_18355 PF03473 MOSC domain HPY11_18355 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY11_18355 PF03473 MOSC domain HPY11_18355 PF03476 MOSC N-terminal beta barrel domain HPY11_18355 PF03476 MOSC N-terminal beta barrel domain HPY11_18360 PF01979 Amidohydrolase family HPY11_18365 PF05958 tRNA (Uracil-5-)-methyltransferase HPY11_18370 PF05661 Protein of unknown function (DUF808) HPY11_18375 PF17151 Periplasmic sensor domain HPY11_18375 PF00990 Diguanylate cyclase, GGDEF domain HPY11_18385 PF00313 'Cold-shock' DNA-binding domain HPY11_18410 PF08448 PAS fold HPY11_18410 PF00990 Diguanylate cyclase, GGDEF domain HPY11_18415 PF08220 DeoR-like helix-turn-helix domain HPY11_18415 PF00455 DeoR C terminal sensor domain HPY11_18430 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_18435 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_18435 PF14785 Maltose transport system permease protein MalF P2 domain HPY11_18440 PF01547 Bacterial extracellular solute-binding protein HPY11_18445 PF00005 ABC transporter HPY11_18445 PF08402 TOBE domain HPY11_18450 PF13302 Acetyltransferase (GNAT) domain HPY11_18465 PF01906 Putative heavy-metal-binding HPY11_18470 PF00196 Bacterial regulatory proteins, luxR family HPY11_18480 PF00072 Response regulator receiver domain HPY11_18480 PF01584 CheW-like domain HPY11_18485 PF01047 MarR family HPY11_18490 PF00990 Diguanylate cyclase, GGDEF domain HPY11_18505 PF00563 EAL domain HPY11_18505 PF00990 Diguanylate cyclase, GGDEF domain HPY11_18505 PF03707 Bacterial signalling protein N terminal repeat HPY11_18525 PF03466 LysR substrate binding domain HPY11_18525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_18530 PF00563 EAL domain HPY11_18530 PF00990 Diguanylate cyclase, GGDEF domain HPY11_18540 PF02678 Pirin HPY11_18540 PF05726 Pirin C-terminal cupin domain HPY11_18545 PF06865 Pyrimidine/purine nucleoside phosphorylase HPY11_18555 PF07690 Major Facilitator Superfamily HPY11_18560 PF17200 Single Cache domain 2 HPY11_18560 PF00672 HAMP domain HPY11_18560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_18565 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY11_18565 PF13654 AAA domain HPY11_18575 PF00005 ABC transporter HPY11_18575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY11_18580 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY11_18585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_18585 PF00672 HAMP domain HPY11_18585 PF17200 Single Cache domain 2 HPY11_18595 PF03466 LysR substrate binding domain HPY11_18595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_18605 PF02652 L-lactate permease HPY11_18610 PF01070 FMN-dependent dehydrogenase HPY11_18620 PF03618 Kinase/pyrophosphorylase HPY11_18625 PF00391 PEP-utilising enzyme, mobile domain HPY11_18625 PF02896 PEP-utilising enzyme, TIM barrel domain HPY11_18625 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HPY11_18630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_18630 PF08447 PAS fold HPY11_18635 PF01554 MatE HPY11_18650 PF03473 MOSC domain HPY11_18650 PF03475 3-alpha domain HPY11_18655 PF00270 DEAD/DEAH box helicase HPY11_18655 PF00271 Helicase conserved C-terminal domain HPY11_18660 PF03786 D-mannonate dehydratase (UxuA) HPY11_18665 PF00392 Bacterial regulatory proteins, gntR family HPY11_18665 PF07729 FCD domain HPY11_18670 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY11_18675 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HPY11_18680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY11_18685 PF08125 Mannitol dehydrogenase C-terminal domain HPY11_18685 PF01232 Mannitol dehydrogenase Rossmann domain HPY11_18690 PF02614 Glucuronate isomerase HPY11_18695 PF00294 pfkB family carbohydrate kinase HPY11_18700 PF01081 KDPG and KHG aldolase HPY11_18705 PF10688 Bacterial inner membrane protein HPY11_18710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_18710 PF03466 LysR substrate binding domain HPY11_18720 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY11_18730 PF00005 ABC transporter HPY11_18730 PF00664 ABC transporter transmembrane region HPY11_18740 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY11_18750 PF01810 LysE type translocator HPY11_18755 PF12833 Helix-turn-helix domain HPY11_18770 PF01557 Fumarylacetoacetate (FAA) hydrolase family HPY11_18775 PF01047 MarR family HPY11_18780 PF02566 OsmC-like protein HPY11_18785 PF13609 Gram-negative porin HPY11_18790 PF00892 EamA-like transporter family HPY11_18795 PF00462 Glutaredoxin HPY11_18800 PF07670 Nucleoside recognition HPY11_18805 PF07670 Nucleoside recognition HPY11_18810 PF03600 Citrate transporter HPY11_18820 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY11_18820 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HPY11_18825 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY11_18825 PF06029 AlkA N-terminal domain HPY11_18830 PF07681 DoxX HPY11_18835 PF03466 LysR substrate binding domain HPY11_18835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_18855 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HPY11_18865 PF07148 Maltose operon periplasmic protein precursor (MalM) HPY11_18870 PF02264 LamB porin HPY11_18875 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY11_18875 PF00128 Alpha amylase, catalytic domain HPY11_18885 PF12729 Four helix bundle sensory module for signal transduction HPY11_18885 PF00672 HAMP domain HPY11_18885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_18895 PF00672 HAMP domain HPY11_18895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_18900 PF05230 MASE2 domain HPY11_18900 PF00990 Diguanylate cyclase, GGDEF domain HPY11_18910 PF00793 DAHP synthetase I family HPY11_18915 PF00005 ABC transporter HPY11_18920 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_18925 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY11_18930 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_18935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY11_18935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY11_18935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY11_18935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY11_18940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY11_18940 PF02378 Phosphotransferase system, EIIC HPY11_18940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY11_18945 PF08125 Mannitol dehydrogenase C-terminal domain HPY11_18945 PF01232 Mannitol dehydrogenase Rossmann domain HPY11_18950 PF05068 Mannitol repressor HPY11_18955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY11_18985 PF13460 NAD(P)H-binding HPY11_18990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_18990 PF03466 LysR substrate binding domain HPY11_18995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_18995 PF00672 HAMP domain HPY11_18995 PF02743 Cache domain HPY11_19000 PF00106 short chain dehydrogenase HPY11_19005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY11_19005 PF03466 LysR substrate binding domain HPY11_19010 PF04013 Putative SAM-dependent RNA methyltransferase HPY11_19015 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY11_19025 PF13520 Amino acid permease HPY11_19030 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HPY11_19030 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HPY11_19030 PF01276 Orn/Lys/Arg decarboxylase, major domain HPY11_19040 PF03472 Autoinducer binding domain HPY11_19040 PF00196 Bacterial regulatory proteins, luxR family HPY11_19070 PF00171 Aldehyde dehydrogenase family HPY11_19075 PF01037 Lrp/AsnC ligand binding domain HPY11_19080 PF02743 Cache domain HPY11_19080 PF00672 HAMP domain HPY11_19080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_19090 PF00474 Sodium:solute symporter family HPY11_19100 PF01619 Proline dehydrogenase HPY11_19100 PF00171 Aldehyde dehydrogenase family HPY11_19100 PF14850 DNA-binding domain of Proline dehydrogenase HPY11_19100 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HPY11_19105 PF12833 Helix-turn-helix domain HPY11_19115 PF03781 Sulfatase-modifying factor enzyme 1 HPY11_19120 PF00196 Bacterial regulatory proteins, luxR family HPY11_19120 PF00072 Response regulator receiver domain HPY11_19125 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HPY11_19125 PF01243 Pyridoxamine 5'-phosphate oxidase HPY11_19130 PF00529 HlyD membrane-fusion protein of T1SS HPY11_19145 PF03412 Peptidase C39 family HPY11_19145 PF00664 ABC transporter transmembrane region HPY11_19145 PF00005 ABC transporter HPY11_19155 PF00072 Response regulator receiver domain HPY11_19155 PF00990 Diguanylate cyclase, GGDEF domain HPY11_19165 PF00672 HAMP domain HPY11_19165 PF02743 Cache domain HPY11_19165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_19170 PF00072 Response regulator receiver domain HPY11_19170 PF01339 CheB methylesterase HPY11_19175 PF03975 CheD chemotactic sensory transduction HPY11_19180 PF03705 CheR methyltransferase, all-alpha domain HPY11_19180 PF01739 CheR methyltransferase, SAM binding domain HPY11_19185 PF00672 HAMP domain HPY11_19185 PF02203 Tar ligand binding domain homologue HPY11_19185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY11_19190 PF01584 CheW-like domain HPY11_19195 PF01584 CheW-like domain HPY11_19200 PF01584 CheW-like domain HPY11_19200 PF09078 CheY binding HPY11_19200 PF02895 Signal transducing histidine kinase, homodimeric domain HPY11_19200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY11_19200 PF01627 Hpt domain HPY11_19205 PF00072 Response regulator receiver domain HPY11_19220 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_19225 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY11_19225 PF00528 Binding-protein-dependent transport system inner membrane component HPY11_19230 PF00005 ABC transporter HPY11_19230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY11_19235 PF13718 GNAT acetyltransferase 2 HPY11_19235 PF05127 Helicase HPY11_19240 PF13416 Bacterial extracellular solute-binding protein