locus-tag class description HPY04_00005 PF00308 Bacterial dnaA protein HPY04_00005 PF08299 Bacterial dnaA protein helix-turn-helix HPY04_00005 PF11638 DnaA N-terminal domain HPY04_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HPY04_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HPY04_00010 PF02767 DNA polymerase III beta subunit, central domain HPY04_00015 PF02463 RecF/RecN/SMC N terminal domain HPY04_00020 PF00204 DNA gyrase B HPY04_00020 PF00986 DNA gyrase B subunit, carboxyl terminus HPY04_00020 PF18053 DNA gyrase B subunit insert domain HPY04_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_00020 PF01751 Toprim domain HPY04_00045 PF00665 Integrase core domain HPY04_00045 PF09299 Mu transposase, C-terminal HPY04_00075 PF00011 Hsp20/alpha crystallin family HPY04_00080 PF00155 Aminotransferase class I and II HPY04_00085 PF05746 DALR anticodon binding domain HPY04_00085 PF02092 Glycyl-tRNA synthetase beta subunit HPY04_00090 PF02091 Glycyl-tRNA synthetase alpha subunit HPY04_00095 PF01169 Uncharacterized protein family UPF0016 HPY04_00105 PF01206 Sulfurtransferase TusA HPY04_00115 PF00107 Zinc-binding dehydrogenase HPY04_00115 PF08240 Alcohol dehydrogenase GroES-like domain HPY04_00120 PF00291 Pyridoxal-phosphate dependent enzyme HPY04_00120 PF00585 C-terminal regulatory domain of Threonine dehydratase HPY04_00125 PF00920 Dehydratase family HPY04_00130 PF01063 Amino-transferase class IV HPY04_00140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY04_00140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY04_00140 PF00205 Thiamine pyrophosphate enzyme, central domain HPY04_00145 PF13335 Magnesium chelatase, subunit ChlI C-terminal HPY04_00145 PF01078 Magnesium chelatase, subunit ChlI HPY04_00150 PF01553 Acyltransferase HPY04_00155 PF01323 DSBA-like thioredoxin domain HPY04_00160 PF01636 Phosphotransferase enzyme family HPY04_00165 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HPY04_00165 PF13746 4Fe-4S dicluster domain HPY04_00165 PF12801 4Fe-4S binding domain HPY04_00170 PF06288 Protein of unknown function (DUF1040) HPY04_00180 PF07070 SpoOM protein HPY04_00185 PF03006 Haemolysin-III related HPY04_00195 PF02386 Cation transport protein HPY04_00200 PF02254 TrkA-N domain HPY04_00200 PF02080 TrkA-C domain HPY04_00205 PF01029 NusB family HPY04_00205 PF01189 16S rRNA methyltransferase RsmB/F HPY04_00210 PF00551 Formyl transferase HPY04_00210 PF02911 Formyl transferase, C-terminal domain HPY04_00215 PF01327 Polypeptide deformylase HPY04_00220 PF01476 LysM domain HPY04_00225 PF17782 DprA winged helix domain HPY04_00225 PF02481 DNA recombination-mediator protein A HPY04_00230 PF04361 Protein of unknown function (DUF494) HPY04_00235 PF01396 Topoisomerase DNA binding C4 zinc finger HPY04_00240 PF02222 ATP-grasp domain HPY04_00240 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HPY04_00245 PF00731 AIR carboxylase HPY04_00250 PF01300 Telomere recombination HPY04_00255 PF01218 Coproporphyrinogen III oxidase HPY04_00260 PF01488 Shikimate / quinate 5-dehydrogenase HPY04_00260 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HPY04_00260 PF08501 Shikimate dehydrogenase substrate binding domain HPY04_00270 PF00132 Bacterial transferase hexapeptide (six repeats) HPY04_00310 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HPY04_00315 PF01964 Radical SAM ThiC family HPY04_00315 PF13667 ThiC-associated domain HPY04_00320 PF02581 Thiamine monophosphate synthase HPY04_00325 PF00899 ThiF family HPY04_00330 PF02597 ThiS family HPY04_00335 PF05690 Thiazole biosynthesis protein ThiG HPY04_00340 PF06968 Biotin and Thiamin Synthesis associated domain HPY04_00340 PF04055 Radical SAM superfamily HPY04_00345 PF01321 Creatinase/Prolidase N-terminal domain HPY04_00345 PF00557 Metallopeptidase family M24 HPY04_00345 PF00557 Metallopeptidase family M24 HPY04_00345 PF01321 Creatinase/Prolidase N-terminal domain HPY04_00350 PF03466 LysR substrate binding domain HPY04_00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_00355 PF07690 Major Facilitator Superfamily HPY04_00365 PF01037 Lrp/AsnC ligand binding domain HPY04_00370 PF00990 Diguanylate cyclase, GGDEF domain HPY04_00370 PF00563 EAL domain HPY04_00370 PF08448 PAS fold HPY04_00375 PF04445 Putative SAM-dependent methyltransferase HPY04_00385 PF00892 EamA-like transporter family HPY04_00390 PF00582 Universal stress protein family HPY04_00395 PF00210 Ferritin-like domain HPY04_00400 PF10625 Universal stress protein B (UspB) HPY04_00415 PF02646 RmuC family HPY04_00420 PF01209 ubiE/COQ5 methyltransferase family HPY04_00425 PF02036 SCP-2 sterol transfer family HPY04_00430 PF03109 ABC1 family HPY04_00435 PF02416 mttA/Hcf106 family HPY04_00440 PF02416 mttA/Hcf106 family HPY04_00445 PF00902 Sec-independent protein translocase protein (TatC) HPY04_00450 PF00034 Cytochrome c HPY04_00450 PF03150 Di-haem cytochrome c peroxidase HPY04_00455 PF01554 MatE HPY04_00465 PF01726 LexA DNA binding domain HPY04_00465 PF00717 Peptidase S24-like HPY04_00470 PF01553 Acyltransferase HPY04_00475 PF01040 UbiA prenyltransferase family HPY04_00480 PF04345 Chorismate lyase HPY04_00485 PF03748 Flagellar basal body-associated protein FliL HPY04_00490 PF00672 HAMP domain HPY04_00490 PF02203 Tar ligand binding domain homologue HPY04_00490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_00495 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HPY04_00495 PF01694 Rhomboid family HPY04_00500 PF00581 Rhodanese-like domain HPY04_00505 PF01026 TatD related DNase HPY04_00510 PF00490 Delta-aminolevulinic acid dehydratase HPY04_00520 PF00476 DNA polymerase family A HPY04_00520 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY04_00520 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY04_00520 PF01612 3'-5' exonuclease HPY04_00525 PF01926 50S ribosome-binding GTPase HPY04_00530 PF00034 Cytochrome c HPY04_00540 PF04220 Der GTPase activator (YihI) HPY04_00545 PF10675 Protein of unknown function (DUF2489) HPY04_00550 PF04055 Radical SAM superfamily HPY04_00550 PF06969 HemN C-terminal domain HPY04_00555 PF07219 HemY protein N-terminus HPY04_00560 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HPY04_00565 PF02602 Uroporphyrinogen-III synthase HemD HPY04_00570 PF03900 Porphobilinogen deaminase, C-terminal domain HPY04_00570 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HPY04_00575 PF12633 Adenylate cyclase NT domain HPY04_00575 PF01295 Adenylate cyclase, class-I HPY04_00580 PF01491 Frataxin-like domain HPY04_00590 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HPY04_00590 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY04_00595 PF01678 Diaminopimelate epimerase HPY04_00600 PF04340 Protein of unknown function, DUF484 HPY04_00605 PF02899 Phage integrase, N-terminal SAM-like domain HPY04_00605 PF00589 Phage integrase family HPY04_00610 PF13419 Haloacid dehalogenase-like hydrolase HPY04_00615 PF00990 Diguanylate cyclase, GGDEF domain HPY04_00615 PF00563 EAL domain HPY04_00615 PF10442 FIST C domain HPY04_00615 PF08495 FIST N domain HPY04_00635 PF12146 Serine aminopeptidase, S33 HPY04_00640 PF01810 LysE type translocator HPY04_00645 PF08668 HDOD domain HPY04_00645 PF00563 EAL domain HPY04_00650 PF00210 Ferritin-like domain HPY04_00685 PF00448 SRP54-type protein, GTPase domain HPY04_00685 PF02881 SRP54-type protein, helical bundle domain HPY04_00690 PF00005 ABC transporter HPY04_00695 PF18075 FtsX extracellular domain HPY04_00700 PF00140 Sigma-70 factor, region 1.2 HPY04_00700 PF04542 Sigma-70 region 2 HPY04_00700 PF04545 Sigma-70, region 4 HPY04_00705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY04_00705 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY04_00710 PF00440 Bacterial regulatory proteins, tetR family HPY04_00720 PF05958 tRNA (Uracil-5-)-methyltransferase HPY04_00725 PF07715 TonB-dependent Receptor Plug Domain HPY04_00725 PF00593 TonB dependent receptor HPY04_00730 PF05922 Peptidase inhibitor I9 HPY04_00730 PF00082 Subtilase family HPY04_00730 PF04151 Bacterial pre-peptidase C-terminal domain HPY04_00735 PF01177 Asp/Glu/Hydantoin racemase HPY04_00805 PF00962 Adenosine/AMP deaminase HPY04_00810 PF00990 Diguanylate cyclase, GGDEF domain HPY04_00810 PF13188 PAS domain HPY04_00810 PF03707 Bacterial signalling protein N terminal repeat HPY04_00810 PF00563 EAL domain HPY04_00815 PF02954 Bacterial regulatory protein, Fis family HPY04_00815 PF00072 Response regulator receiver domain HPY04_00815 PF00158 Sigma-54 interaction domain HPY04_00820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_00820 PF00989 PAS fold HPY04_00820 PF00512 His Kinase A (phospho-acceptor) domain HPY04_00830 PF00120 Glutamine synthetase, catalytic domain HPY04_00830 PF03951 Glutamine synthetase, beta-Grasp domain HPY04_00850 PF03631 Virulence factor BrkB HPY04_00855 PF02580 D-Tyr-tRNA(Tyr) deacylase HPY04_00860 PF00583 Acetyltransferase (GNAT) family HPY04_00860 PF09500 Putative thioesterase (yiiD_Cterm) HPY04_00870 PF01293 Phosphoenolpyruvate carboxykinase HPY04_00875 PF01430 Hsp33 protein HPY04_00880 PF01479 S4 domain HPY04_00885 PF11356 Type II secretion system protein C HPY04_00890 PF03958 Bacterial type II/III secretion system short domain HPY04_00890 PF00263 Bacterial type II and III secretion system protein HPY04_00895 PF00437 Type II/IV secretion system protein HPY04_00900 PF00482 Type II secretion system (T2SS), protein F HPY04_00905 PF08334 Type II secretion system (T2SS), protein G HPY04_00905 PF07963 Prokaryotic N-terminal methylation motif HPY04_00910 PF12019 Type II transport protein GspH HPY04_00915 PF02501 Type II secretion system (T2SS), protein I HPY04_00915 PF07963 Prokaryotic N-terminal methylation motif HPY04_00920 PF07963 Prokaryotic N-terminal methylation motif HPY04_00920 PF11612 Type II secretion system (T2SS), protein J HPY04_00925 PF03934 Type II secretion system (T2SS), protein K HPY04_00930 PF05134 Type II secretion system (T2SS), protein L HPY04_00930 PF12693 GspL periplasmic domain HPY04_00935 PF04612 Type II secretion system (T2SS), protein M HPY04_00940 PF01203 Type II secretion system (T2SS), protein N HPY04_00945 PF00459 Inositol monophosphatase family HPY04_00950 PF00293 NUDIX domain HPY04_00955 PF01106 NifU-like domain HPY04_00955 PF01521 Iron-sulphur cluster biosynthesis HPY04_00960 PF00156 Phosphoribosyl transferase domain HPY04_00970 PF00561 alpha/beta hydrolase fold HPY04_00980 PF09371 Tex-like protein N-terminal domain HPY04_00980 PF17674 HHH domain HPY04_00980 PF00575 S1 RNA binding domain HPY04_00980 PF16921 Tex protein YqgF-like domain HPY04_00985 PF03449 Transcription elongation factor, N-terminal HPY04_00985 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY04_00990 PF00990 Diguanylate cyclase, GGDEF domain HPY04_00990 PF17152 Periplasmic sensor domain HPY04_00995 PF00072 Response regulator receiver domain HPY04_00995 PF00486 Transcriptional regulatory protein, C terminal HPY04_01000 PF00672 HAMP domain HPY04_01000 PF00512 His Kinase A (phospho-acceptor) domain HPY04_01000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_01005 PF00860 Permease family HPY04_01010 PF00271 Helicase conserved C-terminal domain HPY04_01010 PF17191 RecG wedge domain HPY04_01010 PF00270 DEAD/DEAH box helicase HPY04_01015 PF02824 TGS domain HPY04_01015 PF13291 ACT domain HPY04_01015 PF04607 Region found in RelA / SpoT proteins HPY04_01020 PF01192 RNA polymerase Rpb6 HPY04_01025 PF00625 Guanylate kinase HPY04_01030 PF02592 Putative vitamin uptake transporter HPY04_01035 PF00474 Sodium:solute symporter family HPY04_01045 PF02080 TrkA-C domain HPY04_01045 PF00999 Sodium/hydrogen exchanger family HPY04_01045 PF03471 Transporter associated domain HPY04_01050 PF00072 Response regulator receiver domain HPY04_01050 PF00196 Bacterial regulatory proteins, luxR family HPY04_01055 PF11412 Disulphide bond corrector protein DsbC HPY04_01055 PF02683 Cytochrome C biogenesis protein transmembrane region HPY04_01060 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY04_01060 PF17967 Pullulanase N2 domain HPY04_01060 PF18494 Pullulanase Ins domain HPY04_01060 PF03714 Bacterial pullanase-associated domain HPY04_01060 PF11852 Domain of unknown function (DUF3372) HPY04_01065 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY04_01070 PF00206 Lyase HPY04_01070 PF10415 Fumarase C C-terminus HPY04_01075 PF17158 Membrane-associated sensor, integral membrane domain HPY04_01075 PF00990 Diguanylate cyclase, GGDEF domain HPY04_01080 PF04186 FxsA cytoplasmic membrane protein HPY04_01085 PF00588 SpoU rRNA Methylase family HPY04_01090 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY04_01090 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY04_01095 PF00672 HAMP domain HPY04_01095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_01095 PF00512 His Kinase A (phospho-acceptor) domain HPY04_01095 PF16527 Two-component sensor protein CpxA, periplasmic domain HPY04_01100 PF00486 Transcriptional regulatory protein, C terminal HPY04_01100 PF00072 Response regulator receiver domain HPY04_01110 PF01545 Cation efflux family HPY04_01110 PF16916 Dimerisation domain of Zinc Transporter HPY04_01115 PF00365 Phosphofructokinase HPY04_01120 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HPY04_01125 PF06005 Cell division protein ZapB HPY04_01130 PF02219 Methylenetetrahydrofolate reductase HPY04_01135 PF00696 Amino acid kinase family HPY04_01135 PF00742 Homoserine dehydrogenase HPY04_01135 PF03447 Homoserine dehydrogenase, NAD binding domain HPY04_01140 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY04_01145 PF01340 Met Apo-repressor, MetJ HPY04_01150 PF00390 Malic enzyme, N-terminal domain HPY04_01150 PF03949 Malic enzyme, NAD binding domain HPY04_01155 PF01197 Ribosomal protein L31 HPY04_01160 PF00270 DEAD/DEAH box helicase HPY04_01160 PF00271 Helicase conserved C-terminal domain HPY04_01160 PF17764 3′ DNA-binding domain (3′BD) HPY04_01160 PF18074 Primosomal protein N C-terminal domain HPY04_01160 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HPY04_01165 PF00356 Bacterial regulatory proteins, lacI family HPY04_01170 PF05036 Sporulation related domain HPY04_01175 PF00227 Proteasome subunit HPY04_01180 PF00004 ATPase family associated with various cellular activities (AAA) HPY04_01180 PF07724 AAA domain (Cdc48 subfamily) HPY04_01180 PF10431 C-terminal, D2-small domain, of ClpB protein HPY04_01185 PF01040 UbiA prenyltransferase family HPY04_01190 PF03737 Aldolase/RraA HPY04_01195 PF01554 MatE HPY04_01200 PF00121 Triosephosphate isomerase HPY04_01220 PF08220 DeoR-like helix-turn-helix domain HPY04_01220 PF00455 DeoR C terminal sensor domain HPY04_01225 PF00166 Chaperonin 10 Kd subunit HPY04_01230 PF00118 TCP-1/cpn60 chaperonin family HPY04_01235 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HPY04_01250 PF04055 Radical SAM superfamily HPY04_01255 PF09285 Elongation factor P, C-terminal HPY04_01255 PF08207 Elongation factor P (EF-P) KOW-like domain HPY04_01255 PF01132 Elongation factor P (EF-P) OB domain HPY04_01260 PF02313 Fumarate reductase subunit D HPY04_01265 PF02300 Fumarate reductase subunit C HPY04_01270 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY04_01270 PF13183 4Fe-4S dicluster domain HPY04_01275 PF02910 Fumarate reductase flavoprotein C-term HPY04_01275 PF00890 FAD binding domain HPY04_01280 PF00152 tRNA synthetases class II (D, K and N) HPY04_01285 PF00581 Rhodanese-like domain HPY04_01290 PF02556 Preprotein translocase subunit SecB HPY04_01295 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HPY04_01295 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HPY04_01300 PF06426 Serine acetyltransferase, N-terminal HPY04_01300 PF00132 Bacterial transferase hexapeptide (six repeats) HPY04_01310 PF00311 Phosphoenolpyruvate carboxylase HPY04_01315 PF01546 Peptidase family M20/M25/M40 HPY04_01315 PF07687 Peptidase dimerisation domain HPY04_01320 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY04_01320 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY04_01325 PF00696 Amino acid kinase family HPY04_01330 PF00764 Arginosuccinate synthase HPY04_01335 PF00206 Lyase HPY04_01335 PF14698 Argininosuccinate lyase C-terminal HPY04_01345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY04_01345 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY04_01350 PF00462 Glutaredoxin HPY04_01350 PF08534 Redoxin HPY04_01355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_01355 PF03466 LysR substrate binding domain HPY04_01360 PF00905 Penicillin binding protein transpeptidase domain HPY04_01360 PF00912 Transglycosylase HPY04_01360 PF17092 Penicillin-binding protein OB-like domain HPY04_01385 PF07660 Secretin and TonB N terminus short domain HPY04_01385 PF03958 Bacterial type II/III secretion system short domain HPY04_01385 PF11741 AMIN domain HPY04_01385 PF00263 Bacterial type II and III secretion system protein HPY04_01390 PF01202 Shikimate kinase HPY04_01395 PF01761 3-dehydroquinate synthase HPY04_01405 PF02086 D12 class N6 adenine-specific DNA methyltransferase HPY04_01410 PF00834 Ribulose-phosphate 3 epimerase family HPY04_01415 PF13419 Haloacid dehalogenase-like hydrolase HPY04_01420 PF00579 tRNA synthetases class I (W and Y) HPY04_01435 PF00919 Uncharacterized protein family UPF0004 HPY04_01435 PF18693 TRAM domain HPY04_01435 PF04055 Radical SAM superfamily HPY04_01440 PF00117 Glutamine amidotransferase class-I HPY04_01445 PF00202 Aminotransferase class-III HPY04_01450 PF04958 Arginine N-succinyltransferase beta subunit HPY04_01455 PF00171 Aldehyde dehydrogenase family HPY04_01465 PF13545 Crp-like helix-turn-helix domain HPY04_01465 PF00027 Cyclic nucleotide-binding domain HPY04_01470 PF00485 Phosphoribulokinase / Uridine kinase family HPY04_01475 PF06794 Uncharacterised protein family (UPF0270) HPY04_01480 PF00561 alpha/beta hydrolase fold HPY04_01490 PF12848 ABC transporter HPY04_01490 PF00005 ABC transporter HPY04_01495 PF02525 Flavodoxin-like fold HPY04_01500 PF02254 TrkA-N domain HPY04_01500 PF00999 Sodium/hydrogen exchanger family HPY04_01510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY04_01515 PF01112 Asparaginase HPY04_01520 PF00709 Adenylosuccinate synthetase HPY04_01525 PF08238 Sel1 repeat HPY04_01530 PF11893 Domain of unknown function (DUF3413) HPY04_01530 PF00884 Sulfatase HPY04_01535 PF00575 S1 RNA binding domain HPY04_01535 PF00773 RNB domain HPY04_01535 PF08206 Ribonuclease B OB domain HPY04_01535 PF08461 Ribonuclease R winged-helix domain HPY04_01535 PF17876 Cold shock domain HPY04_01540 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY04_01540 PF00588 SpoU rRNA Methylase family HPY04_01545 PF00338 Ribosomal protein S10p/S20e HPY04_01550 PF00297 Ribosomal protein L3 HPY04_01555 PF00573 Ribosomal protein L4/L1 family HPY04_01560 PF00276 Ribosomal protein L23 HPY04_01565 PF03947 Ribosomal Proteins L2, C-terminal domain HPY04_01565 PF00181 Ribosomal Proteins L2, RNA binding domain HPY04_01570 PF00203 Ribosomal protein S19 HPY04_01575 PF00237 Ribosomal protein L22p/L17e HPY04_01580 PF00189 Ribosomal protein S3, C-terminal domain HPY04_01580 PF07650 KH domain HPY04_01585 PF00252 Ribosomal protein L16p/L10e HPY04_01590 PF00831 Ribosomal L29 protein HPY04_01595 PF00366 Ribosomal protein S17 HPY04_01600 PF00238 Ribosomal protein L14p/L23e HPY04_01605 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HPY04_01605 PF00467 KOW motif HPY04_01610 PF00673 ribosomal L5P family C-terminus HPY04_01610 PF00281 Ribosomal protein L5 HPY04_01615 PF00253 Ribosomal protein S14p/S29e HPY04_01620 PF00410 Ribosomal protein S8 HPY04_01625 PF00347 Ribosomal protein L6 HPY04_01630 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HPY04_01635 PF00333 Ribosomal protein S5, N-terminal domain HPY04_01635 PF03719 Ribosomal protein S5, C-terminal domain HPY04_01640 PF00327 Ribosomal protein L30p/L7e HPY04_01645 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HPY04_01650 PF00344 SecY translocase HPY04_01655 PF00444 Ribosomal protein L36 HPY04_01660 PF00416 Ribosomal protein S13/S18 HPY04_01665 PF00411 Ribosomal protein S11 HPY04_01670 PF01479 S4 domain HPY04_01670 PF00163 Ribosomal protein S4/S9 N-terminal domain HPY04_01675 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HPY04_01675 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HPY04_01675 PF01000 RNA polymerase Rpb3/RpoA insert domain HPY04_01680 PF01196 Ribosomal protein L17 HPY04_01690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY04_01690 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY04_01695 PF04225 Opacity-associated protein A LysM-like domain HPY04_01695 PF08525 Opacity-associated protein A N-terminal motif HPY04_01700 PF00892 EamA-like transporter family HPY04_01705 PF13673 Acetyltransferase (GNAT) domain HPY04_01710 PF03880 DbpA RNA binding domain HPY04_01710 PF00271 Helicase conserved C-terminal domain HPY04_01710 PF00270 DEAD/DEAH box helicase HPY04_01720 PF02872 5'-nucleotidase, C-terminal domain HPY04_01720 PF00149 Calcineurin-like phosphoesterase HPY04_01725 PF14824 Sirohaem biosynthesis protein central HPY04_01725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY04_01725 PF10414 Sirohaem synthase dimerisation region HPY04_01730 PF01507 Phosphoadenosine phosphosulfate reductase family HPY04_01735 PF00009 Elongation factor Tu GTP binding domain HPY04_01760 PF00005 ABC transporter HPY04_01770 PF10795 Protein of unknown function (DUF2607) HPY04_01775 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HPY04_01780 PF01625 Peptide methionine sulfoxide reductase HPY04_01785 PF01103 Surface antigen HPY04_01785 PF17243 POTRA domain TamA domain 1 HPY04_01785 PF07244 Surface antigen variable number repeat HPY04_01790 PF04357 TamB, inner membrane protein subunit of TAM complex HPY04_01795 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like HPY04_01800 PF00719 Inorganic pyrophosphatase HPY04_01805 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HPY04_01810 PF01225 Mur ligase family, catalytic domain HPY04_01810 PF02875 Mur ligase family, glutamate ligase domain HPY04_01810 PF08245 Mur ligase middle domain HPY04_01815 PF02441 Flavoprotein HPY04_01825 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_01830 PF00005 ABC transporter HPY04_01835 PF04751 Protein of unknown function (DUF615) HPY04_01840 PF01523 Putative modulator of DNA gyrase HPY04_01845 PF01769 Divalent cation transporter HPY04_01845 PF03448 MgtE intracellular N domain HPY04_01845 PF00571 CBS domain HPY04_01850 PF00381 PTS HPr component phosphorylation site HPY04_01855 PF03668 P-loop ATPase protein family HPY04_01860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY04_01865 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY04_01870 PF00309 Sigma-54 factor, Activator interacting domain (AID) HPY04_01870 PF04552 Sigma-54, DNA binding domain HPY04_01870 PF04963 Sigma-54 factor, core binding domain HPY04_01875 PF00005 ABC transporter HPY04_01875 PF12399 Branched-chain amino acid ATP-binding cassette transporter HPY04_01880 PF03968 OstA-like protein HPY04_01895 PF01380 SIS domain HPY04_01895 PF00571 CBS domain HPY04_01900 PF01699 Sodium/calcium exchanger protein HPY04_01905 PF00005 ABC transporter HPY04_01910 PF02405 Permease MlaE HPY04_01915 PF02470 MlaD protein HPY04_01920 PF05494 MlaC protein HPY04_01930 PF01722 BolA-like protein HPY04_01935 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY04_01940 PF01553 Acyltransferase HPY04_01945 PF01042 Endoribonuclease L-PSP HPY04_01950 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HPY04_01950 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HPY04_01955 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY04_01955 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY04_01960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY04_01960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY04_01965 PF02562 PhoH-like protein HPY04_01965 PF13638 PIN domain HPY04_01970 PF18337 RapA N-terminal Tudor like domain HPY04_01970 PF00271 Helicase conserved C-terminal domain HPY04_01970 PF18339 RapA N-terminal Tudor like domain 1 HPY04_01970 PF00176 SNF2 family N-terminal domain HPY04_01970 PF12137 RNA polymerase recycling family C-terminal HPY04_01975 PF00849 RNA pseudouridylate synthase HPY04_01980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY04_01980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY04_01985 PF08264 Anticodon-binding domain of tRNA HPY04_01985 PF00133 tRNA synthetases class I (I, L, M and V) HPY04_01985 PF10458 Valyl tRNA synthetase tRNA binding arm HPY04_01990 PF04364 DNA polymerase III chi subunit, HolC HPY04_01995 PF00883 Cytosol aminopeptidase family, catalytic domain HPY04_01995 PF02789 Cytosol aminopeptidase family, N-terminal domain HPY04_02000 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY04_02005 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY04_02020 PF00072 Response regulator receiver domain HPY04_02065 PF00694 Aconitase C-terminal domain HPY04_02070 PF00330 Aconitase family (aconitate hydratase) HPY04_02075 PF00180 Isocitrate/isopropylmalate dehydrogenase HPY04_02080 PF08502 LeuA allosteric (dimerisation) domain HPY04_02080 PF00682 HMGL-like HPY04_02085 PF01569 PAP2 superfamily HPY04_02095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_02095 PF03466 LysR substrate binding domain HPY04_02100 PF00501 AMP-binding enzyme HPY04_02105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY04_02105 PF00205 Thiamine pyrophosphate enzyme, central domain HPY04_02105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY04_02110 PF10369 Small subunit of acetolactate synthase HPY04_02115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY04_02115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY04_02115 PF01842 ACT domain HPY04_02120 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HPY04_02125 PF01812 5-formyltetrahydrofolate cyclo-ligase family HPY04_02135 PF05164 Cell division protein ZapA HPY04_02140 PF03695 Uncharacterised protein family (UPF0149) HPY04_02145 PF01494 FAD binding domain HPY04_02150 PF01494 FAD binding domain HPY04_02165 PF03937 Flavinator of succinate dehydrogenase HPY04_02175 PF02910 Fumarate reductase flavoprotein C-term HPY04_02175 PF00890 FAD binding domain HPY04_02180 PF08281 Sigma-70, region 4 HPY04_02180 PF04542 Sigma-70 region 2 HPY04_02185 PF03873 Anti sigma-E protein RseA, C-terminal domain HPY04_02185 PF03872 Anti sigma-E protein RseA, N-terminal domain HPY04_02190 PF03888 MucB/RseB N-terminal domain HPY04_02190 PF17188 MucB/RseB C-terminal domain HPY04_02200 PF06421 GTP-binding protein LepA C-terminus HPY04_02200 PF03144 Elongation factor Tu domain 2 HPY04_02200 PF00679 Elongation factor G C-terminus HPY04_02200 PF00009 Elongation factor Tu GTP binding domain HPY04_02205 PF10502 Signal peptidase, peptidase S26 HPY04_02210 PF00035 Double-stranded RNA binding motif HPY04_02210 PF14622 Ribonuclease-III-like HPY04_02215 PF07650 KH domain HPY04_02215 PF01926 50S ribosome-binding GTPase HPY04_02220 PF11967 Recombination protein O N terminal HPY04_02220 PF02565 Recombination protein O C terminal HPY04_02225 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HPY04_02230 PF01648 4'-phosphopantetheinyl transferase superfamily HPY04_02245 PF00990 Diguanylate cyclase, GGDEF domain HPY04_02245 PF00563 EAL domain HPY04_02250 PF01627 Hpt domain HPY04_02250 PF00512 His Kinase A (phospho-acceptor) domain HPY04_02250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_02250 PF00072 Response regulator receiver domain HPY04_02250 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY04_02250 PF00672 HAMP domain HPY04_02255 PF05958 tRNA (Uracil-5-)-methyltransferase HPY04_02255 PF01938 TRAM domain HPY04_02260 PF13291 ACT domain HPY04_02260 PF04607 Region found in RelA / SpoT proteins HPY04_02260 PF02824 TGS domain HPY04_02265 PF03819 MazG nucleotide pyrophosphohydrolase domain HPY04_02270 PF00117 Glutamine amidotransferase class-I HPY04_02270 PF06418 CTP synthase N-terminus HPY04_02275 PF03952 Enolase, N-terminal domain HPY04_02275 PF00113 Enolase, C-terminal TIM barrel domain HPY04_02280 PF01743 Poly A polymerase head domain HPY04_02280 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY04_02280 PF01966 HD domain HPY04_02285 PF01471 Putative peptidoglycan binding domain HPY04_02285 PF13401 AAA domain HPY04_02295 PF08239 Bacterial SH3 domain HPY04_02300 PF01384 Phosphate transporter family HPY04_02305 PF01865 Protein of unknown function DUF47 HPY04_02310 PF01928 CYTH domain HPY04_02315 PF02743 Cache domain HPY04_02315 PF00672 HAMP domain HPY04_02315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_02320 PF03710 Glutamate-ammonia ligase adenylyltransferase HPY04_02320 PF08335 GlnD PII-uridylyltransferase HPY04_02325 PF00294 pfkB family carbohydrate kinase HPY04_02325 PF01467 Cytidylyltransferase-like HPY04_02330 PF02321 Outer membrane efflux protein HPY04_02335 PF00293 NUDIX domain HPY04_02340 PF06853 Protein of unknown function (DUF1249) HPY04_02345 PF00149 Calcineurin-like phosphoesterase HPY04_02350 PF05728 Uncharacterised protein family (UPF0227) HPY04_02355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_02355 PF00204 DNA gyrase B HPY04_02355 PF00986 DNA gyrase B subunit, carboxyl terminus HPY04_02355 PF01751 Toprim domain HPY04_02360 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY04_02360 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY04_02365 PF03884 DNA gyrase inhibitor YacG HPY04_02370 PF07072 Cell division protein HPY04_02375 PF01121 Dephospho-CoA kinase HPY04_02380 PF06750 Bacterial Peptidase A24 N-terminal domain HPY04_02380 PF01478 Type IV leader peptidase family HPY04_02385 PF00482 Type II secretion system (T2SS), protein F HPY04_02390 PF00437 Type II/IV secretion system protein HPY04_02390 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HPY04_02400 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HPY04_02400 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HPY04_02405 PF01510 N-acetylmuramoyl-L-alanine amidase HPY04_02410 PF00258 Flavodoxin HPY04_02415 PF02899 Phage integrase, N-terminal SAM-like domain HPY04_02415 PF00589 Phage integrase family HPY04_02420 PF10411 Disulfide bond isomerase protein N-terminus HPY04_02420 PF13098 Thioredoxin-like domain HPY04_02425 PF01368 DHH family HPY04_02425 PF02272 DHHA1 domain HPY04_02425 PF17768 RecJ OB domain HPY04_02430 PF00149 Calcineurin-like phosphoesterase HPY04_02430 PF02872 5'-nucleotidase, C-terminal domain HPY04_02435 PF00392 Bacterial regulatory proteins, gntR family HPY04_02435 PF07729 FCD domain HPY04_02440 PF17831 Pyruvate dehydrogenase E1 component middle domain HPY04_02440 PF00456 Transketolase, thiamine diphosphate binding domain HPY04_02445 PF00364 Biotin-requiring enzyme HPY04_02445 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY04_02445 PF02817 e3 binding domain HPY04_02450 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY04_02450 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY04_02460 PF01795 MraW methylase family HPY04_02465 PF04999 Cell division protein FtsL HPY04_02470 PF03717 Penicillin-binding Protein dimerisation domain HPY04_02470 PF00905 Penicillin binding protein transpeptidase domain HPY04_02475 PF08245 Mur ligase middle domain HPY04_02475 PF02875 Mur ligase family, glutamate ligase domain HPY04_02475 PF01225 Mur ligase family, catalytic domain HPY04_02480 PF01225 Mur ligase family, catalytic domain HPY04_02480 PF02875 Mur ligase family, glutamate ligase domain HPY04_02480 PF08245 Mur ligase middle domain HPY04_02485 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HPY04_02485 PF00953 Glycosyl transferase family 4 HPY04_02490 PF02875 Mur ligase family, glutamate ligase domain HPY04_02490 PF08245 Mur ligase middle domain HPY04_02495 PF01098 Cell cycle protein HPY04_02500 PF03033 Glycosyltransferase family 28 N-terminal domain HPY04_02500 PF04101 Glycosyltransferase family 28 C-terminal domain HPY04_02505 PF08245 Mur ligase middle domain HPY04_02505 PF01225 Mur ligase family, catalytic domain HPY04_02505 PF02875 Mur ligase family, glutamate ligase domain HPY04_02510 PF03799 Cell division protein FtsQ HPY04_02510 PF08478 POTRA domain, FtsQ-type HPY04_02515 PF02491 SHS2 domain inserted in FTSA HPY04_02520 PF00091 Tubulin/FtsZ family, GTPase domain HPY04_02520 PF12327 FtsZ family, C-terminal domain HPY04_02525 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HPY04_02535 PF02810 SEC-C motif HPY04_02535 PF07517 SecA DEAD-like domain HPY04_02535 PF07516 SecA Wing and Scaffold domain HPY04_02535 PF01043 SecA preprotein cross-linking domain HPY04_02540 PF00293 NUDIX domain HPY04_02545 PF01113 Dihydrodipicolinate reductase, N-terminus HPY04_02545 PF05173 Dihydrodipicolinate reductase, C-terminus HPY04_02555 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HPY04_02555 PF00117 Glutamine amidotransferase class-I HPY04_02560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HPY04_02560 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HPY04_02560 PF02142 MGS-like domain HPY04_02570 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HPY04_02580 PF14706 Transposase DNA-binding HPY04_02580 PF02281 Transposase Tn5 dimerisation domain HPY04_02580 PF01609 Transposase DDE domain HPY04_02585 PF01925 Sulfite exporter TauE/SafE HPY04_02590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_02590 PF03466 LysR substrate binding domain HPY04_02595 PF03458 UPF0126 domain HPY04_02600 PF01497 Periplasmic binding protein HPY04_02610 PF01048 Phosphorylase superfamily HPY04_02620 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY04_02620 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY04_02625 PF01493 GXGXG motif HPY04_02625 PF01645 Conserved region in glutamate synthase HPY04_02625 PF04898 Glutamate synthase central domain HPY04_02625 PF00310 Glutamine amidotransferases class-II HPY04_02630 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY04_02630 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY04_02635 PF01493 GXGXG motif HPY04_02635 PF04898 Glutamate synthase central domain HPY04_02635 PF01645 Conserved region in glutamate synthase HPY04_02635 PF00310 Glutamine amidotransferases class-II HPY04_02640 PF04055 Radical SAM superfamily HPY04_02640 PF16199 Radical_SAM C-terminal domain HPY04_02645 PF00990 Diguanylate cyclase, GGDEF domain HPY04_02645 PF00563 EAL domain HPY04_02645 PF01590 GAF domain HPY04_02645 PF00360 Phytochrome region HPY04_02650 PF00512 His Kinase A (phospho-acceptor) domain HPY04_02650 PF01627 Hpt domain HPY04_02650 PF00989 PAS fold HPY04_02650 PF00072 Response regulator receiver domain HPY04_02650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_02650 PF18415 Histidine kinase receptor ArcB trans-membrane domain HPY04_02655 PF00486 Transcriptional regulatory protein, C terminal HPY04_02655 PF00072 Response regulator receiver domain HPY04_02665 PF03737 Aldolase/RraA HPY04_02680 PF00696 Amino acid kinase family HPY04_02680 PF01842 ACT domain HPY04_02680 PF03447 Homoserine dehydrogenase, NAD binding domain HPY04_02680 PF13840 ACT domain HPY04_02680 PF00742 Homoserine dehydrogenase HPY04_02685 PF08544 GHMP kinases C terminal HPY04_02685 PF00288 GHMP kinases N terminal domain HPY04_02690 PF14821 Threonine synthase N terminus HPY04_02690 PF00291 Pyridoxal-phosphate dependent enzyme HPY04_02695 PF01228 Glycine radical HPY04_02700 PF01261 Xylose isomerase-like TIM barrel HPY04_02705 PF03167 Uracil DNA glycosylase superfamily HPY04_02720 PF01235 Sodium:alanine symporter family HPY04_02725 PF03883 Peroxide stress protein YaaA HPY04_02735 PF01026 TatD related DNase HPY04_02740 PF07670 Nucleoside recognition HPY04_02740 PF01773 Na+ dependent nucleoside transporter N-terminus HPY04_02740 PF07662 Na+ dependent nucleoside transporter C-terminus HPY04_02750 PF01791 DeoC/LacD family aldolase HPY04_02755 PF00591 Glycosyl transferase family, a/b domain HPY04_02755 PF02885 Glycosyl transferase family, helical bundle domain HPY04_02755 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HPY04_02760 PF01676 Metalloenzyme superfamily HPY04_02765 PF01048 Phosphorylase superfamily HPY04_02775 PF18429 Domain of unknown function (DUF5609) HPY04_02785 PF18073 Rubredoxin metal binding domain HPY04_02790 PF03144 Elongation factor Tu domain 2 HPY04_02790 PF00009 Elongation factor Tu GTP binding domain HPY04_02790 PF00679 Elongation factor G C-terminus HPY04_02790 PF03764 Elongation factor G, domain IV HPY04_02790 PF14492 Elongation Factor G, domain II HPY04_02795 PF00501 AMP-binding enzyme HPY04_02800 PF00072 Response regulator receiver domain HPY04_02810 PF16353 Domain of unknown function(DUF4981) HPY04_02810 PF00703 Glycosyl hydrolases family 2 HPY04_02810 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HPY04_02810 PF02929 Beta galactosidase small chain HPY04_02810 PF02837 Glycosyl hydrolases family 2, sugar binding domain HPY04_02815 PF00356 Bacterial regulatory proteins, lacI family HPY04_02820 PF01588 Putative tRNA binding domain HPY04_02830 PF01544 CorA-like Mg2+ transporter protein HPY04_02835 PF18030 RimK PreATP-grasp domain HPY04_02835 PF02080 TrkA-C domain HPY04_02835 PF08443 RimK-like ATP-grasp domain HPY04_02840 PF00583 Acetyltransferase (GNAT) family HPY04_02850 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HPY04_02850 PF14602 Hexapeptide repeat of succinyl-transferase HPY04_02855 PF07130 YebG protein HPY04_02870 PF17946 RecC C-terminal domain HPY04_02875 PF12705 PD-(D/E)XK nuclease superfamily HPY04_02875 PF00580 UvrD/REP helicase N-terminal domain HPY04_02875 PF13361 UvrD-like helicase C-terminal domain HPY04_02880 PF13538 UvrD-like helicase C-terminal domain HPY04_02890 PF00583 Acetyltransferase (GNAT) family HPY04_02890 PF00696 Amino acid kinase family HPY04_02900 PF03562 MltA specific insert domain HPY04_02900 PF06725 3D domain HPY04_02905 PF00899 ThiF family HPY04_02910 PF02657 Fe-S metabolism associated domain HPY04_02920 PF01965 DJ-1/PfpI family HPY04_02925 PF02558 Ketopantoate reductase PanE/ApbA HPY04_02925 PF08546 Ketopantoate reductase PanE/ApbA C terminal HPY04_02930 PF03502 Nucleoside-specific channel-forming protein, Tsx HPY04_02940 PF04545 Sigma-70, region 4 HPY04_02940 PF04542 Sigma-70 region 2 HPY04_02950 PF07690 Major Facilitator Superfamily HPY04_02955 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY04_02965 PF05175 Methyltransferase small domain HPY04_02970 PF01722 BolA-like protein HPY04_02975 PF11973 NQRA C-terminal domain HPY04_02975 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HPY04_02980 PF03116 NQR2, RnfD, RnfE family HPY04_02985 PF04205 FMN-binding domain HPY04_02990 PF02508 Rnf-Nqr subunit, membrane protein HPY04_02995 PF02508 Rnf-Nqr subunit, membrane protein HPY04_03000 PF00175 Oxidoreductase NAD-binding domain HPY04_03000 PF00970 Oxidoreductase FAD-binding domain HPY04_03000 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY04_03005 PF02424 ApbE family HPY04_03015 PF11798 IMS family HHH motif HPY04_03015 PF00817 impB/mucB/samB family HPY04_03025 PF00990 Diguanylate cyclase, GGDEF domain HPY04_03025 PF17158 Membrane-associated sensor, integral membrane domain HPY04_03030 PF00209 Sodium:neurotransmitter symporter family HPY04_03040 PF18030 RimK PreATP-grasp domain HPY04_03040 PF08443 RimK-like ATP-grasp domain HPY04_03045 PF18030 RimK PreATP-grasp domain HPY04_03045 PF08443 RimK-like ATP-grasp domain HPY04_03050 PF07687 Peptidase dimerisation domain HPY04_03050 PF01546 Peptidase family M20/M25/M40 HPY04_03055 PF00860 Permease family HPY04_03060 PF00156 Phosphoribosyl transferase domain HPY04_03070 PF07417 Sigma factor-binding transcriptional regulator Crl HPY04_03075 PF00696 Amino acid kinase family HPY04_03075 PF01472 PUA domain HPY04_03080 PF00171 Aldehyde dehydrogenase family HPY04_03085 PF03477 ATP cone domain HPY04_03090 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY04_03090 PF01872 RibD C-terminal domain HPY04_03095 PF00677 Lumazine binding domain HPY04_03100 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY04_03100 PF00925 GTP cyclohydrolase II HPY04_03105 PF00885 6,7-dimethyl-8-ribityllumazine synthase HPY04_03110 PF01029 NusB family HPY04_03115 PF00586 AIR synthase related protein, N-terminal domain HPY04_03115 PF02769 AIR synthase related protein, C-terminal domain HPY04_03120 PF04608 Phosphatidylglycerophosphatase A HPY04_03125 PF11944 Protein of unknown function (DUF3461) HPY04_03130 PF08335 GlnD PII-uridylyltransferase HPY04_03130 PF01966 HD domain HPY04_03130 PF01909 Nucleotidyltransferase domain HPY04_03135 PF00557 Metallopeptidase family M24 HPY04_03140 PF00318 Ribosomal protein S2 HPY04_03145 PF00889 Elongation factor TS HPY04_03150 PF00696 Amino acid kinase family HPY04_03155 PF01765 Ribosome recycling factor HPY04_03160 PF01255 Putative undecaprenyl diphosphate synthase HPY04_03170 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HPY04_03170 PF13288 DXP reductoisomerase C-terminal domain HPY04_03170 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HPY04_03175 PF02163 Peptidase family M50 HPY04_03175 PF17820 PDZ domain HPY04_03180 PF07244 Surface antigen variable number repeat HPY04_03180 PF01103 Surface antigen HPY04_03185 PF03938 Outer membrane protein (OmpH-like) HPY04_03190 PF00132 Bacterial transferase hexapeptide (six repeats) HPY04_03190 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HPY04_03195 PF07977 FabA-like domain HPY04_03200 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HPY04_03200 PF00132 Bacterial transferase hexapeptide (six repeats) HPY04_03205 PF02684 Lipid-A-disaccharide synthetase HPY04_03210 PF01351 Ribonuclease HII HPY04_03215 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HPY04_03215 PF07733 Bacterial DNA polymerase III alpha NTPase domain HPY04_03215 PF14579 Helix-hairpin-helix motif HPY04_03215 PF02811 PHP domain HPY04_03215 PF01336 OB-fold nucleic acid binding domain HPY04_03220 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HPY04_03225 PF09179 TilS substrate binding domain HPY04_03225 PF11734 TilS substrate C-terminal domain HPY04_03225 PF01171 PP-loop family HPY04_03230 PF00034 Cytochrome c HPY04_03235 PF05870 Phenolic acid decarboxylase (PAD) HPY04_03240 PF00543 Nitrogen regulatory protein P-II HPY04_03245 PF03372 Endonuclease/Exonuclease/phosphatase family HPY04_03250 PF01476 LysM domain HPY04_03250 PF01464 Transglycosylase SLT domain HPY04_03255 PF00753 Metallo-beta-lactamase superfamily HPY04_03255 PF16123 Hydroxyacylglutathione hydrolase C-terminus HPY04_03260 PF08241 Methyltransferase domain HPY04_03265 PF00075 RNase H HPY04_03270 PF00929 Exonuclease HPY04_03280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY04_03280 PF02770 Acyl-CoA dehydrogenase, middle domain HPY04_03280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY04_03280 PF09317 Domain of unknown function (DUF1974) HPY04_03285 PF13580 SIS domain HPY04_03290 PF13230 Glutamine amidotransferases class-II HPY04_03295 PF00551 Formyl transferase HPY04_03300 PF00586 AIR synthase related protein, N-terminal domain HPY04_03300 PF02769 AIR synthase related protein, C-terminal domain HPY04_03310 PF00990 Diguanylate cyclase, GGDEF domain HPY04_03310 PF08448 PAS fold HPY04_03315 PF01479 S4 domain HPY04_03315 PF00849 RNA pseudouridylate synthase HPY04_03320 PF01713 Smr domain HPY04_03340 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HPY04_03340 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY04_03340 PF03173 Putative carbohydrate binding domain HPY04_03340 PF02838 Glycosyl hydrolase family 20, domain 2 HPY04_03350 PF00403 Heavy-metal-associated domain HPY04_03355 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY04_03360 PF01389 OmpA-like transmembrane domain HPY04_03360 PF00691 OmpA family HPY04_03370 PF07715 TonB-dependent Receptor Plug Domain HPY04_03375 PF04954 Siderophore-interacting protein HPY04_03375 PF08021 Siderophore-interacting FAD-binding domain HPY04_03380 PF00501 AMP-binding enzyme HPY04_03380 PF00668 Condensation domain HPY04_03380 PF00550 Phosphopantetheine attachment site HPY04_03380 PF08242 Methyltransferase domain HPY04_03415 PF01584 CheW-like domain HPY04_03415 PF00072 Response regulator receiver domain HPY04_03420 PF01739 CheR methyltransferase, SAM binding domain HPY04_03420 PF03705 CheR methyltransferase, all-alpha domain HPY04_03425 PF00460 Flagella basal body rod protein HPY04_03430 PF00460 Flagella basal body rod protein HPY04_03430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY04_03435 PF13861 FlgD Tudor-like domain HPY04_03435 PF13860 FlgD Ig-like domain HPY04_03435 PF03963 Flagellar hook capping protein - N-terminal region HPY04_03440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY04_03440 PF00460 Flagella basal body rod protein HPY04_03440 PF07559 Flagellar basal body protein FlaE HPY04_03445 PF00460 Flagella basal body rod protein HPY04_03445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY04_03450 PF00460 Flagella basal body rod protein HPY04_03450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY04_03455 PF02107 Flagellar L-ring protein HPY04_03460 PF02119 Flagellar P-ring protein HPY04_03465 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HPY04_03465 PF10135 Rod binding protein HPY04_03470 PF07196 Flagellin hook IN motif HPY04_03470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY04_03480 PF07196 Flagellin hook IN motif HPY04_03480 PF00669 Bacterial flagellin N-terminal helical region HPY04_03480 PF00700 Bacterial flagellin C-terminal helical region HPY04_03485 PF00700 Bacterial flagellin C-terminal helical region HPY04_03485 PF07196 Flagellin hook IN motif HPY04_03485 PF00669 Bacterial flagellin N-terminal helical region HPY04_03570 PF01926 50S ribosome-binding GTPase HPY04_03570 PF06071 Protein of unknown function (DUF933) HPY04_03575 PF01195 Peptidyl-tRNA hydrolase HPY04_03580 PF14572 Phosphoribosyl synthetase-associated domain HPY04_03580 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HPY04_03585 PF08544 GHMP kinases C terminal HPY04_03585 PF00288 GHMP kinases N terminal domain HPY04_03590 PF03550 Outer membrane lipoprotein LolB HPY04_03595 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HPY04_03595 PF01488 Shikimate / quinate 5-dehydrogenase HPY04_03595 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HPY04_03600 PF00472 RF-1 domain HPY04_03600 PF03462 PCRF domain HPY04_03605 PF13847 Methyltransferase domain HPY04_03605 PF17827 PrmC N-terminal domain HPY04_03610 PF04247 Invasion gene expression up-regulator, SirB HPY04_03615 PF13369 Transglutaminase-like superfamily HPY04_03620 PF00793 DAHP synthetase I family HPY04_03625 PF00149 Calcineurin-like phosphoesterase HPY04_03625 PF02872 5'-nucleotidase, C-terminal domain HPY04_03630 PF04073 Aminoacyl-tRNA editing domain HPY04_03635 PF00860 Permease family HPY04_03650 PF03358 NADPH-dependent FMN reductase HPY04_03655 PF03960 ArsC family HPY04_03660 PF13181 Tetratricopeptide repeat HPY04_03660 PF01435 Peptidase family M48 HPY04_03670 PF01594 AI-2E family transporter HPY04_03675 PF02743 Cache domain HPY04_03675 PF00672 HAMP domain HPY04_03675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_03680 PF00578 AhpC/TSA family HPY04_03690 PF00701 Dihydrodipicolinate synthetase family HPY04_03695 PF06804 NlpB/DapX lipoprotein HPY04_03705 PF02557 D-alanyl-D-alanine carboxypeptidase HPY04_03710 PF01546 Peptidase family M20/M25/M40 HPY04_03710 PF07687 Peptidase dimerisation domain HPY04_03715 PF03960 ArsC family HPY04_03730 PF11143 Protein of unknown function (DUF2919) HPY04_03735 PF04261 Dyp-type peroxidase family HPY04_03740 PF00700 Bacterial flagellin C-terminal helical region HPY04_03740 PF07196 Flagellin hook IN motif HPY04_03740 PF00669 Bacterial flagellin N-terminal helical region HPY04_03745 PF00669 Bacterial flagellin N-terminal helical region HPY04_03745 PF00700 Bacterial flagellin C-terminal helical region HPY04_03745 PF07196 Flagellin hook IN motif HPY04_03750 PF07196 Flagellin hook IN motif HPY04_03750 PF00700 Bacterial flagellin C-terminal helical region HPY04_03750 PF00669 Bacterial flagellin N-terminal helical region HPY04_03755 PF03646 FlaG protein HPY04_03760 PF07195 Flagellar hook-associated protein 2 C-terminus HPY04_03760 PF07196 Flagellin hook IN motif HPY04_03760 PF02465 Flagellar hook-associated protein 2 N-terminus HPY04_03770 PF02561 Flagellar protein FliS HPY04_03775 PF00158 Sigma-54 interaction domain HPY04_03775 PF06490 Flagellar regulatory protein FleQ HPY04_03775 PF02954 Bacterial regulatory protein, Fis family HPY04_03780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_03780 PF00512 His Kinase A (phospho-acceptor) domain HPY04_03780 PF00989 PAS fold HPY04_03780 PF13493 Domain of unknown function (DUF4118) HPY04_03780 PF13426 PAS domain HPY04_03780 PF08447 PAS fold HPY04_03785 PF00158 Sigma-54 interaction domain HPY04_03785 PF02954 Bacterial regulatory protein, Fis family HPY04_03785 PF00072 Response regulator receiver domain HPY04_03790 PF02049 Flagellar hook-basal body complex protein FliE HPY04_03795 PF08345 Flagellar M-ring protein C-terminal HPY04_03795 PF01514 Secretory protein of YscJ/FliF family HPY04_03800 PF14841 FliG middle domain HPY04_03800 PF14842 FliG N-terminal domain HPY04_03800 PF01706 FliG C-terminal domain HPY04_03805 PF02108 Flagellar assembly protein FliH HPY04_03810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY04_03810 PF18269 T3SS EscN ATPase C-terminal domain HPY04_03830 PF03748 Flagellar basal body-associated protein FliL HPY04_03835 PF02154 Flagellar motor switch protein FliM HPY04_03835 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY04_03840 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY04_03845 PF04347 Flagellar biosynthesis protein, FliO HPY04_03850 PF00813 FliP family HPY04_03855 PF01313 Bacterial export proteins, family 3 HPY04_03860 PF01311 Bacterial export proteins, family 1 HPY04_03865 PF01312 FlhB HrpN YscU SpaS Family HPY04_03870 PF01713 Smr domain HPY04_03875 PF05175 Methyltransferase small domain HPY04_03880 PF01264 Chorismate synthase HPY04_03885 PF03458 UPF0126 domain HPY04_03890 PF04315 Elongation factor P hydroxylase HPY04_03895 PF08891 YfcL protein HPY04_03900 PF03358 NADPH-dependent FMN reductase HPY04_03905 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HPY04_03905 PF01266 FAD dependent oxidoreductase HPY04_03910 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY04_03910 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY04_03915 PF11890 Domain of unknown function (DUF3410) HPY04_03915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY04_03915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY04_03920 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY04_03920 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY04_03925 PF01475 Ferric uptake regulator family HPY04_03935 PF03466 LysR substrate binding domain HPY04_03935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_03940 PF03788 LrgA family HPY04_03945 PF04172 LrgB-like family HPY04_03950 PF00258 Flavodoxin HPY04_03960 PF12697 Alpha/beta hydrolase family HPY04_03965 PF03925 SeqA protein C-terminal domain HPY04_03965 PF17206 SeqA protein N-terminal domain HPY04_03970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY04_03970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY04_03970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY04_03970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY04_03980 PF01784 NIF3 (NGG1p interacting factor 3) HPY04_03985 PF00285 Citrate synthase, C-terminal domain HPY04_03990 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY04_03995 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY04_04000 PF02910 Fumarate reductase flavoprotein C-term HPY04_04000 PF00890 FAD binding domain HPY04_04005 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY04_04010 PF02779 Transketolase, pyrimidine binding domain HPY04_04010 PF16870 2-oxoglutarate dehydrogenase C-terminal HPY04_04010 PF16078 2-oxoglutarate dehydrogenase N-terminus HPY04_04010 PF00676 Dehydrogenase E1 component HPY04_04015 PF02817 e3 binding domain HPY04_04015 PF00364 Biotin-requiring enzyme HPY04_04015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY04_04020 PF08442 ATP-grasp domain HPY04_04020 PF00549 CoA-ligase HPY04_04025 PF02629 CoA binding domain HPY04_04025 PF00549 CoA-ligase HPY04_04030 PF00950 ABC 3 transport family HPY04_04035 PF00005 ABC transporter HPY04_04040 PF01297 Zinc-uptake complex component A periplasmic HPY04_04045 PF02311 AraC-like ligand binding domain HPY04_04045 PF12833 Helix-turn-helix domain HPY04_04050 PF04023 FeoA domain HPY04_04055 PF02421 Ferrous iron transport protein B HPY04_04055 PF07664 Ferrous iron transport protein B C terminus HPY04_04055 PF07670 Nucleoside recognition HPY04_04070 PF03485 Arginyl tRNA synthetase N terminal domain HPY04_04070 PF05746 DALR anticodon binding domain HPY04_04070 PF00750 tRNA synthetases class I (R) HPY04_04080 PF00675 Insulinase (Peptidase family M16) HPY04_04080 PF05193 Peptidase M16 inactive domain HPY04_04085 PF00300 Histidine phosphatase superfamily (branch 1) HPY04_04090 PF00771 FHIPEP family HPY04_04095 PF00448 SRP54-type protein, GTPase domain HPY04_04100 PF10609 NUBPL iron-transfer P-loop NTPase HPY04_04105 PF04539 Sigma-70 region 3 HPY04_04105 PF04545 Sigma-70, region 4 HPY04_04105 PF04542 Sigma-70 region 2 HPY04_04110 PF00072 Response regulator receiver domain HPY04_04115 PF04344 Chemotaxis phosphatase, CheZ HPY04_04120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_04120 PF01627 Hpt domain HPY04_04120 PF00072 Response regulator receiver domain HPY04_04120 PF01584 CheW-like domain HPY04_04120 PF02895 Signal transducing histidine kinase, homodimeric domain HPY04_04125 PF00072 Response regulator receiver domain HPY04_04125 PF01339 CheB methylesterase HPY04_04130 PF13614 AAA domain HPY04_04140 PF01584 CheW-like domain HPY04_04150 PF00005 ABC transporter HPY04_04155 PF03379 CcmB protein HPY04_04160 PF01578 Cytochrome C assembly protein HPY04_04165 PF04995 Heme exporter protein D (CcmD) HPY04_04170 PF03100 CcmE HPY04_04175 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HPY04_04175 PF01578 Cytochrome C assembly protein HPY04_04180 PF08534 Redoxin HPY04_04185 PF03918 Cytochrome C biogenesis protein HPY04_04195 PF04333 MlaA lipoprotein HPY04_04210 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY04_04210 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY04_04215 PF00462 Glutaredoxin HPY04_04220 PF01131 DNA topoisomerase HPY04_04220 PF01751 Toprim domain HPY04_04225 PF00850 Histone deacetylase domain HPY04_04240 PF00884 Sulfatase HPY04_04240 PF11893 Domain of unknown function (DUF3413) HPY04_04245 PF07208 Protein of unknown function (DUF1414) HPY04_04250 PF04245 37-kD nucleoid-associated bacterial protein HPY04_04260 PF03553 Na+/H+ antiporter family HPY04_04265 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY04_04265 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY04_04270 PF01914 MarC family integral membrane protein HPY04_04275 PF00171 Aldehyde dehydrogenase family HPY04_04275 PF00465 Iron-containing alcohol dehydrogenase HPY04_04285 PF01740 STAS domain HPY04_04285 PF00916 Sulfate permease family HPY04_04290 PF12111 Polyribonucleotide phosphorylase C terminal HPY04_04290 PF10150 Ribonuclease E/G family HPY04_04290 PF00575 S1 RNA binding domain HPY04_04295 PF01479 S4 domain HPY04_04295 PF00849 RNA pseudouridylate synthase HPY04_04300 PF02545 Maf-like protein HPY04_04305 PF02620 Large ribosomal RNA subunit accumulation protein YceD HPY04_04310 PF01783 Ribosomal L32p protein family HPY04_04315 PF02504 Fatty acid synthesis protein HPY04_04320 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY04_04320 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY04_04325 PF00698 Acyl transferase domain HPY04_04335 PF00550 Phosphopantetheine attachment site HPY04_04340 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY04_04340 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY04_04345 PF01063 Amino-transferase class IV HPY04_04350 PF02618 YceG-like family HPY04_04355 PF02223 Thymidylate kinase HPY04_04360 PF09115 DNA polymerase III, delta subunit, C terminal HPY04_04365 PF01026 TatD related DNase HPY04_04370 PF02378 Phosphotransferase system, EIIC HPY04_04370 PF00367 phosphotransferase system, EIIB HPY04_04375 PF14706 Transposase DNA-binding HPY04_04375 PF02281 Transposase Tn5 dimerisation domain HPY04_04375 PF01609 Transposase DDE domain HPY04_04385 PF00209 Sodium:neurotransmitter symporter family HPY04_04400 PF01734 Patatin-like phospholipase HPY04_04405 PF02887 Pyruvate kinase, alpha/beta domain HPY04_04405 PF00224 Pyruvate kinase, barrel domain HPY04_04410 PF00480 ROK family HPY04_04415 PF01584 CheW-like domain HPY04_04415 PF00072 Response regulator receiver domain HPY04_04430 PF13847 Methyltransferase domain HPY04_04440 PF01263 Aldose 1-epimerase HPY04_04445 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY04_04445 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY04_04450 PF01641 SelR domain HPY04_04460 PF07023 Protein of unknown function (DUF1315) HPY04_04465 PF00710 Asparaginase, N-terminal HPY04_04465 PF17763 Glutaminase/Asparaginase C-terminal domain HPY04_04470 PF01343 Peptidase family S49 HPY04_04475 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY04_04475 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY04_04480 PF01842 ACT domain HPY04_04480 PF00551 Formyl transferase HPY04_04490 PF13307 Helicase C-terminal domain HPY04_04490 PF04851 Type III restriction enzyme, res subunit HPY04_04495 PF00814 Glycoprotease family HPY04_04510 PF00561 alpha/beta hydrolase fold HPY04_04515 PF00501 AMP-binding enzyme HPY04_04515 PF13193 AMP-binding enzyme C-terminal domain HPY04_04520 PF00570 HRDC domain HPY04_04520 PF01612 3'-5' exonuclease HPY04_04535 PF13286 Phosphohydrolase-associated domain HPY04_04535 PF01966 HD domain HPY04_04545 PF00155 Aminotransferase class I and II HPY04_04550 PF00425 chorismate binding enzyme HPY04_04555 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY04_04555 PF16582 Middle domain of thiamine pyrophosphate HPY04_04555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY04_04560 PF12697 Alpha/beta hydrolase family HPY04_04565 PF00378 Enoyl-CoA hydratase/isomerase HPY04_04570 PF13378 Enolase C-terminal domain-like HPY04_04575 PF00501 AMP-binding enzyme HPY04_04575 PF13193 AMP-binding enzyme C-terminal domain HPY04_04580 PF03594 Benzoate membrane transport protein HPY04_04585 PF07690 Major Facilitator Superfamily HPY04_04605 PF04170 NlpE N-terminal domain HPY04_04610 PF03776 Septum formation topological specificity factor MinE HPY04_04615 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY04_04620 PF05209 Septum formation inhibitor MinC, N-terminal domain HPY04_04620 PF03775 Septum formation inhibitor MinC, C-terminal domain HPY04_04625 PF05166 YcgL domain HPY04_04630 PF13406 Transglycosylase SLT domain HPY04_04635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_04635 PF03466 LysR substrate binding domain HPY04_04640 PF01773 Na+ dependent nucleoside transporter N-terminus HPY04_04640 PF07662 Na+ dependent nucleoside transporter C-terminus HPY04_04640 PF07670 Nucleoside recognition HPY04_04645 PF00704 Glycosyl hydrolases family 18 HPY04_04650 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY04_04655 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY04_04655 PF01568 Molydopterin dinucleotide binding domain HPY04_04655 PF00384 Molybdopterin oxidoreductase HPY04_04665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_04665 PF03466 LysR substrate binding domain HPY04_04670 PF01494 FAD binding domain HPY04_04675 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HPY04_04680 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HPY04_04680 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HPY04_04725 PF13188 PAS domain HPY04_04725 PF03707 Bacterial signalling protein N terminal repeat HPY04_04725 PF00990 Diguanylate cyclase, GGDEF domain HPY04_04725 PF00563 EAL domain HPY04_04735 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HPY04_04740 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY04_04745 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HPY04_04750 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY04_04755 PF00158 Sigma-54 interaction domain HPY04_04755 PF02954 Bacterial regulatory protein, Fis family HPY04_04755 PF00072 Response regulator receiver domain HPY04_04760 PF02743 Cache domain HPY04_04760 PF00512 His Kinase A (phospho-acceptor) domain HPY04_04760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_04770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY04_04770 PF05697 Bacterial trigger factor protein (TF) HPY04_04770 PF05698 Bacterial trigger factor protein (TF) C-terminus HPY04_04775 PF00574 Clp protease HPY04_04780 PF07724 AAA domain (Cdc48 subfamily) HPY04_04780 PF06689 ClpX C4-type zinc finger HPY04_04780 PF10431 C-terminal, D2-small domain, of ClpB protein HPY04_04785 PF02190 ATP-dependent protease La (LON) substrate-binding domain HPY04_04785 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY04_04785 PF00004 ATPase family associated with various cellular activities (AAA) HPY04_04790 PF00216 Bacterial DNA-binding protein HPY04_04795 PF13145 PPIC-type PPIASE domain HPY04_04805 PF02224 Cytidylate kinase HPY04_04810 PF00575 S1 RNA binding domain HPY04_04815 PF00216 Bacterial DNA-binding protein HPY04_04820 PF06305 Lipopolysaccharide assembly protein A domain HPY04_04825 PF18073 Rubredoxin metal binding domain HPY04_04830 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY04_04835 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_04840 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_04840 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY04_04845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY04_04850 PF00005 ABC transporter HPY04_04850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY04_04855 PF00005 ABC transporter HPY04_04855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY04_04870 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HPY04_04880 PF03466 LysR substrate binding domain HPY04_04880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_04890 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY04_04890 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY04_04895 PF01037 Lrp/AsnC ligand binding domain HPY04_04900 PF09397 Ftsk gamma domain HPY04_04900 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HPY04_04900 PF17854 FtsK alpha domain HPY04_04900 PF01580 FtsK/SpoIIIE family HPY04_04905 PF02600 Disulfide bond formation protein DsbB HPY04_04910 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HPY04_04915 PF07840 FadR C-terminal domain HPY04_04915 PF00392 Bacterial regulatory proteins, gntR family HPY04_04925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_04925 PF00672 HAMP domain HPY04_04930 PF01230 HIT domain HPY04_04945 PF13036 Peptidoglycan-synthase activator LpoB HPY04_04945 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HPY04_04955 PF05728 Uncharacterised protein family (UPF0227) HPY04_04960 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY04_04970 PF07968 Leukocidin/Hemolysin toxin family HPY04_04970 PF16458 Beta-prism lectin HPY04_04970 PF12563 Hemolytic toxin N terminal HPY04_04980 PF17757 UvrB interaction domain HPY04_04980 PF03461 TRCF domain HPY04_04980 PF00271 Helicase conserved C-terminal domain HPY04_04980 PF00270 DEAD/DEAH box helicase HPY04_04980 PF02559 CarD-like/TRCF domain HPY04_04990 PF12704 MacB-like periplasmic core domain HPY04_04990 PF02687 FtsX-like permease family HPY04_04995 PF00005 ABC transporter HPY04_05000 PF12704 MacB-like periplasmic core domain HPY04_05000 PF02687 FtsX-like permease family HPY04_05010 PF00753 Metallo-beta-lactamase superfamily HPY04_05010 PF13567 Domain of unknown function (DUF4131) HPY04_05010 PF03772 Competence protein HPY04_05015 PF00005 ABC transporter HPY04_05015 PF00664 ABC transporter transmembrane region HPY04_05020 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HPY04_05025 PF03966 Trm112p-like protein HPY04_05030 PF02348 Cytidylyltransferase HPY04_05035 PF04293 SpoVR like protein HPY04_05040 PF04285 Protein of unknown function (DUF444) HPY04_05045 PF06798 PrkA serine protein kinase C-terminal domain HPY04_05045 PF08298 PrkA AAA domain HPY04_05050 PF03887 YfbU domain HPY04_05060 PF04055 Radical SAM superfamily HPY04_05065 PF12729 Four helix bundle sensory module for signal transduction HPY04_05065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_05065 PF00672 HAMP domain HPY04_05075 PF01228 Glycine radical HPY04_05075 PF02901 Pyruvate formate lyase-like HPY04_05085 PF00005 ABC transporter HPY04_05090 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY04_05095 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_05100 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_05105 PF03372 Endonuclease/Exonuclease/phosphatase family HPY04_05110 PF00672 HAMP domain HPY04_05110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_05115 PF10689 Protein of unknown function (DUF2496) HPY04_05120 PF07445 Primosomal replication protein priC HPY04_05125 PF01925 Sulfite exporter TauE/SafE HPY04_05130 PF06733 DEAD_2 HPY04_05130 PF13307 Helicase C-terminal domain HPY04_05135 PF13609 Gram-negative porin HPY04_05140 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY04_05145 PF02810 SEC-C motif HPY04_05150 PF08668 HDOD domain HPY04_05150 PF00563 EAL domain HPY04_05155 PF00149 Calcineurin-like phosphoesterase HPY04_05160 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY04_05165 PF01406 tRNA synthetases class I (C) catalytic domain HPY04_05165 PF09190 DALR domain HPY04_05170 PF02075 Crossover junction endodeoxyribonuclease RuvC HPY04_05175 PF01330 RuvA N terminal domain HPY04_05175 PF07499 RuvA, C-terminal domain HPY04_05180 PF17864 RuvB AAA lid domain HPY04_05180 PF05491 RuvB C-terminal winged helix domain HPY04_05180 PF05496 Holliday junction DNA helicase RuvB P-loop domain HPY04_05185 PF01654 Cytochrome bd terminal oxidase subunit I HPY04_05190 PF02322 Cytochrome bd terminal oxidase subunit II HPY04_05195 PF08173 Membrane bound YbgT-like protein HPY04_05200 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HPY04_05205 PF03061 Thioesterase superfamily HPY04_05210 PF01618 MotA/TolQ/ExbB proton channel family HPY04_05215 PF02472 Biopolymer transport protein ExbD/TolR HPY04_05225 PF04052 TolB amino-terminal domain HPY04_05225 PF07676 WD40-like Beta Propeller Repeat HPY04_05230 PF00691 OmpA family HPY04_05240 PF02445 Quinolinate synthetase A protein HPY04_05250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_05250 PF00512 His Kinase A (phospho-acceptor) domain HPY04_05250 PF00072 Response regulator receiver domain HPY04_05250 PF09308 LuxQ, periplasmic HPY04_05255 PF06610 L-alanine exporter HPY04_05260 PF00171 Aldehyde dehydrogenase family HPY04_05265 PF02954 Bacterial regulatory protein, Fis family HPY04_05265 PF01590 GAF domain HPY04_05265 PF00158 Sigma-54 interaction domain HPY04_05270 PF09905 DNA-binding protein VF530 HPY04_05280 PF00875 DNA photolyase HPY04_05280 PF03441 FAD binding domain of DNA photolyase HPY04_05295 PF07728 AAA domain (dynein-related subfamily) HPY04_05295 PF12102 Domain of unknown function (DUF3578) HPY04_05325 PF13088 BNR repeat-like domain HPY04_05325 PF09264 Vibrio cholerae sialidase, lectin insertion HPY04_05330 PF01979 Amidohydrolase family HPY04_05335 PF00480 ROK family HPY04_05340 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase HPY04_05345 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY04_05350 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HPY04_05355 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY04_05360 PF00701 Dihydrodipicolinate synthetase family HPY04_05365 PF01418 Helix-turn-helix domain, rpiR family HPY04_05365 PF01380 SIS domain HPY04_05370 PF01344 Kelch motif HPY04_05375 PF07646 Kelch motif HPY04_05385 PF11999 Protein of unknown function (DUF3494) HPY04_05385 PF02368 Bacterial Ig-like domain (group 2) HPY04_05410 PF00561 alpha/beta hydrolase fold HPY04_05415 PF03347 Vibrio thermostable direct hemolysin HPY04_05420 PF13322 Domain of unknown function (DUF4092) HPY04_05420 PF17291 N-terminal domain of M60-like peptidases HPY04_05420 PF13402 Peptidase M60, enhancin and enhancin-like HPY04_05525 PF00771 FHIPEP family HPY04_05530 PF01312 FlhB HrpN YscU SpaS Family HPY04_05535 PF00691 OmpA family HPY04_05560 PF00486 Transcriptional regulatory protein, C terminal HPY04_05570 PF00813 FliP family HPY04_05585 PF00263 Bacterial type II and III secretion system protein HPY04_05585 PF03958 Bacterial type II/III secretion system short domain HPY04_05590 PF18269 T3SS EscN ATPase C-terminal domain HPY04_05590 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY04_05590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY04_05635 PF03545 Yersinia virulence determinant (YopE) HPY04_05635 PF09020 YopE, N terminal HPY04_05650 PF00589 Phage integrase family HPY04_05650 PF13356 Arm DNA-binding domain HPY04_05660 PF00873 AcrB/AcrD/AcrF family HPY04_05665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY04_05675 PF02470 MlaD protein HPY04_05680 PF04403 Paraquat-inducible protein A HPY04_05685 PF05552 Conserved TM helix HPY04_05685 PF00924 Mechanosensitive ion channel HPY04_05705 PF08362 YcdC-like protein, C-terminal region HPY04_05705 PF00440 Bacterial regulatory proteins, tetR family HPY04_05710 PF00171 Aldehyde dehydrogenase family HPY04_05715 PF07383 Protein of unknown function (DUF1496) HPY04_05730 PF00440 Bacterial regulatory proteins, tetR family HPY04_05730 PF16295 Tetracyclin repressor-like, C-terminal domain HPY04_05735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY04_05735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY04_05735 PF02770 Acyl-CoA dehydrogenase, middle domain HPY04_05735 PF09317 Domain of unknown function (DUF1974) HPY04_05740 PF07055 Enoyl reductase FAD binding domain HPY04_05740 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY04_05740 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY04_05745 PF01176 Translation initiation factor 1A / IF-1 HPY04_05750 PF04376 Arginine-tRNA-protein transferase, N terminus HPY04_05750 PF04377 Arginine-tRNA-protein transferase, C terminus HPY04_05755 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HPY04_05760 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY04_05765 PF10692 Protein of unknown function (DUF2498) HPY04_05770 PF01396 Topoisomerase DNA binding C4 zinc finger HPY04_05770 PF01751 Toprim domain HPY04_05770 PF01131 DNA topoisomerase HPY04_05770 PF08272 Topoisomerase I zinc-ribbon-like HPY04_05775 PF00483 Nucleotidyl transferase HPY04_05780 PF08323 Starch synthase catalytic domain HPY04_05780 PF00534 Glycosyl transferases group 1 HPY04_05800 PF04993 TfoX N-terminal domain HPY04_05800 PF04994 TfoX C-terminal domain HPY04_05805 PF00356 Bacterial regulatory proteins, lacI family HPY04_05810 PF02613 Nitrate reductase delta subunit HPY04_05815 PF00072 Response regulator receiver domain HPY04_05815 PF00486 Transcriptional regulatory protein, C terminal HPY04_05820 PF02698 DUF218 domain HPY04_05825 PF13847 Methyltransferase domain HPY04_05830 PF03882 MukF winged-helix domain HPY04_05830 PF17192 MukF middle domain HPY04_05830 PF17193 MukF C-terminal domain HPY04_05835 PF04288 MukE-like family HPY04_05840 PF16330 MukB hinge domain HPY04_05840 PF04310 MukB N-terminal HPY04_05845 PF00465 Iron-containing alcohol dehydrogenase HPY04_05850 PF12833 Helix-turn-helix domain HPY04_05850 PF06719 AraC-type transcriptional regulator N-terminus HPY04_05860 PF01037 Lrp/AsnC ligand binding domain HPY04_05865 PF01810 LysE type translocator HPY04_05870 PF11842 Domain of unknown function (DUF3362) HPY04_05870 PF04055 Radical SAM superfamily HPY04_05870 PF08497 Radical SAM N-terminal HPY04_05875 PF00563 EAL domain HPY04_05875 PF08448 PAS fold HPY04_05875 PF08447 PAS fold HPY04_05875 PF00990 Diguanylate cyclase, GGDEF domain HPY04_05880 PF00675 Insulinase (Peptidase family M16) HPY04_05880 PF05193 Peptidase M16 inactive domain HPY04_05895 PF03466 LysR substrate binding domain HPY04_05895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_05900 PF08267 Cobalamin-independent synthase, N-terminal domain HPY04_05900 PF01717 Cobalamin-independent synthase, Catalytic domain HPY04_05910 PF03795 YCII-related domain HPY04_05915 PF03061 Thioesterase superfamily HPY04_05920 PF04279 Intracellular septation protein A HPY04_05930 PF02698 DUF218 domain HPY04_05935 PF01370 NAD dependent epimerase/dehydratase family HPY04_05945 PF01226 Formate/nitrite transporter HPY04_05950 PF06796 Periplasmic nitrate reductase protein NapE HPY04_05955 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY04_05960 PF00384 Molybdopterin oxidoreductase HPY04_05960 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY04_05960 PF01568 Molydopterin dinucleotide binding domain HPY04_05975 PF02833 DHHA2 domain HPY04_05975 PF01368 DHH family HPY04_05990 PF00005 ABC transporter HPY04_05995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY04_05995 PF00005 ABC transporter HPY04_06000 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_06000 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY04_06005 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_06010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY04_06015 PF00158 Sigma-54 interaction domain HPY04_06015 PF02954 Bacterial regulatory protein, Fis family HPY04_06020 PF04012 PspA/IM30 family HPY04_06035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY04_06035 PF00529 HlyD membrane-fusion protein of T1SS HPY04_06040 PF13533 Biotin-lipoyl like HPY04_06045 PF00873 AcrB/AcrD/AcrF family HPY04_06050 PF03352 Methyladenine glycosylase HPY04_06055 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY04_06060 PF13396 Phospholipase_D-nuclease N-terminal HPY04_06060 PF13091 PLD-like domain HPY04_06065 PF00209 Sodium:neurotransmitter symporter family HPY04_06070 PF00849 RNA pseudouridylate synthase HPY04_06075 PF01066 CDP-alcohol phosphatidyltransferase HPY04_06080 PF00005 ABC transporter HPY04_06085 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_06090 PF13416 Bacterial extracellular solute-binding protein HPY04_06100 PF06945 Protein of unknown function (DUF1289) HPY04_06115 PF00005 ABC transporter HPY04_06120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY04_06125 PF03222 Tryptophan/tyrosine permease family HPY04_06135 PF03448 MgtE intracellular N domain HPY04_06135 PF01769 Divalent cation transporter HPY04_06135 PF00571 CBS domain HPY04_06140 PF09308 LuxQ, periplasmic HPY04_06140 PF00072 Response regulator receiver domain HPY04_06140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_06140 PF00512 His Kinase A (phospho-acceptor) domain HPY04_06145 PF00990 Diguanylate cyclase, GGDEF domain HPY04_06145 PF00563 EAL domain HPY04_06145 PF03707 Bacterial signalling protein N terminal repeat HPY04_06155 PF04151 Bacterial pre-peptidase C-terminal domain HPY04_06155 PF08453 Peptidase family M9 N-terminal HPY04_06155 PF01752 Collagenase HPY04_06165 PF12793 Sugar transport-related sRNA regulator N-term HPY04_06165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY04_06180 PF09101 Exotoxin A binding HPY04_06180 PF09009 Exotoxin A catalytic HPY04_06180 PF09102 Exotoxin A, targeting HPY04_06190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_06190 PF00672 HAMP domain HPY04_06190 PF12729 Four helix bundle sensory module for signal transduction HPY04_06200 PF01590 GAF domain HPY04_06200 PF00990 Diguanylate cyclase, GGDEF domain HPY04_06200 PF00360 Phytochrome region HPY04_06200 PF00563 EAL domain HPY04_06205 PF01386 Ribosomal L25p family HPY04_06210 PF11808 Phosphate regulon sensor protein PhoR HPY04_06210 PF00512 His Kinase A (phospho-acceptor) domain HPY04_06210 PF00989 PAS fold HPY04_06210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_06215 PF00072 Response regulator receiver domain HPY04_06215 PF00486 Transcriptional regulatory protein, C terminal HPY04_06225 PF00271 Helicase conserved C-terminal domain HPY04_06225 PF04851 Type III restriction enzyme, res subunit HPY04_06230 PF01479 S4 domain HPY04_06230 PF00849 RNA pseudouridylate synthase HPY04_06235 PF07690 Major Facilitator Superfamily HPY04_06245 PF11066 Protein of unknown function (DUF2867) HPY04_06245 PF13460 NAD(P)H-binding HPY04_06250 PF01554 MatE HPY04_06255 PF00005 ABC transporter HPY04_06270 PF06965 Na+/H+ antiporter 1 HPY04_06275 PF00202 Aminotransferase class-III HPY04_06280 PF16653 Saccharopine dehydrogenase C-terminal domain HPY04_06280 PF03435 Saccharopine dehydrogenase NADP binding domain HPY04_06290 PF05736 OprF membrane domain HPY04_06290 PF00691 OmpA family HPY04_06295 PF02321 Outer membrane efflux protein HPY04_06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_06315 PF03466 LysR substrate binding domain HPY04_06325 PF01863 Protein of unknown function DUF45 HPY04_06330 PF05971 RNA methyltransferase HPY04_06345 PF04204 Homoserine O-succinyltransferase HPY04_06365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY04_06380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_06380 PF00989 PAS fold HPY04_06380 PF17203 Single cache domain 3 HPY04_06380 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HPY04_06385 PF00072 Response regulator receiver domain HPY04_06385 PF12431 Transcriptional regulator HPY04_06395 PF01584 CheW-like domain HPY04_06395 PF00072 Response regulator receiver domain HPY04_06415 PF00072 Response regulator receiver domain HPY04_06415 PF00990 Diguanylate cyclase, GGDEF domain HPY04_06435 PF07690 Major Facilitator Superfamily HPY04_06440 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HPY04_06440 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HPY04_06445 PF08544 GHMP kinases C terminal HPY04_06445 PF10509 Galactokinase galactose-binding signature HPY04_06445 PF00288 GHMP kinases N terminal domain HPY04_06450 PF01263 Aldose 1-epimerase HPY04_06455 PF00990 Diguanylate cyclase, GGDEF domain HPY04_06460 PF17154 Gammaproteobacterial periplasmic sensor domain HPY04_06460 PF00672 HAMP domain HPY04_06460 PF00563 EAL domain HPY04_06460 PF00990 Diguanylate cyclase, GGDEF domain HPY04_06470 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY04_06470 PF00205 Thiamine pyrophosphate enzyme, central domain HPY04_06470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY04_06475 PF03306 Alpha-acetolactate decarboxylase HPY04_06480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_06480 PF03466 LysR substrate binding domain HPY04_06490 PF06628 Catalase-related immune-responsive HPY04_06490 PF00199 Catalase HPY04_06500 PF00080 Copper/zinc superoxide dismutase (SODC) HPY04_06505 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) HPY04_06510 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY04_06510 PF00361 Proton-conducting membrane transporter HPY04_06515 PF03466 LysR substrate binding domain HPY04_06515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_06520 PF13193 AMP-binding enzyme C-terminal domain HPY04_06520 PF00501 AMP-binding enzyme HPY04_06550 PF10415 Fumarase C C-terminus HPY04_06550 PF00206 Lyase HPY04_06560 PF01654 Cytochrome bd terminal oxidase subunit I HPY04_06565 PF02322 Cytochrome bd terminal oxidase subunit II HPY04_06570 PF00005 ABC transporter HPY04_06570 PF02687 FtsX-like permease family HPY04_06570 PF12704 MacB-like periplasmic core domain HPY04_06575 PF02687 FtsX-like permease family HPY04_06575 PF12704 MacB-like periplasmic core domain HPY04_06575 PF00005 ABC transporter HPY04_06580 PF12704 MacB-like periplasmic core domain HPY04_06580 PF00005 ABC transporter HPY04_06580 PF02687 FtsX-like permease family HPY04_06590 PF00529 HlyD membrane-fusion protein of T1SS HPY04_06600 PF00141 Peroxidase HPY04_06605 PF00232 Glycosyl hydrolase family 1 HPY04_06610 PF00356 Bacterial regulatory proteins, lacI family HPY04_06615 PF01042 Endoribonuclease L-PSP HPY04_06620 PF04074 YhcH/YjgK/YiaL HPY04_06625 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY04_06630 PF00455 DeoR C terminal sensor domain HPY04_06630 PF08220 DeoR-like helix-turn-helix domain HPY04_06635 PF00005 ABC transporter HPY04_06635 PF17912 MalK OB fold domain HPY04_06640 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_06645 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_06650 PF13416 Bacterial extracellular solute-binding protein HPY04_06660 PF01618 MotA/TolQ/ExbB proton channel family HPY04_06665 PF01618 MotA/TolQ/ExbB proton channel family HPY04_06670 PF02472 Biopolymer transport protein ExbD/TolR HPY04_06675 PF03544 Gram-negative bacterial TonB protein C-terminal HPY04_06685 PF01068 ATP dependent DNA ligase domain HPY04_06685 PF14743 DNA ligase OB-like domain HPY04_06695 PF01554 MatE HPY04_06705 PF03881 Fructosamine kinase HPY04_06715 PF00877 NlpC/P60 family HPY04_06720 PF12729 Four helix bundle sensory module for signal transduction HPY04_06720 PF00672 HAMP domain HPY04_06720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_06735 PF00480 ROK family HPY04_06745 PF03454 MoeA C-terminal region (domain IV) HPY04_06745 PF00994 Probable molybdopterin binding domain HPY04_06745 PF03453 MoeA N-terminal region (domain I and II) HPY04_06750 PF12804 MobA-like NTP transferase domain HPY04_06755 PF00005 ABC transporter HPY04_06755 PF08402 TOBE domain HPY04_06760 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_06765 PF12849 PBP superfamily domain HPY04_06770 PF00158 Sigma-54 interaction domain HPY04_06770 PF02954 Bacterial regulatory protein, Fis family HPY04_06770 PF00072 Response regulator receiver domain HPY04_06775 PF00989 PAS fold HPY04_06775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_06775 PF00512 His Kinase A (phospho-acceptor) domain HPY04_06780 PF12848 ABC transporter HPY04_06780 PF00005 ABC transporter HPY04_06785 PF02634 FdhD/NarQ family HPY04_06805 PF02613 Nitrate reductase delta subunit HPY04_06815 PF01568 Molydopterin dinucleotide binding domain HPY04_06815 PF00384 Molybdopterin oxidoreductase HPY04_06815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY04_06820 PF13247 4Fe-4S dicluster domain HPY04_06835 PF02146 Sir2 family HPY04_06840 PF04461 Protein of unknown function (DUF520) HPY04_06845 PF00793 DAHP synthetase I family HPY04_06860 PF17783 CvfB-like winged helix domain HPY04_06860 PF13509 S1 domain HPY04_06865 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HPY04_06865 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HPY04_06865 PF01189 16S rRNA methyltransferase RsmB/F HPY04_06870 PF02470 MlaD protein HPY04_06875 PF04403 Paraquat-inducible protein A HPY04_06880 PF00664 ABC transporter transmembrane region HPY04_06880 PF00005 ABC transporter HPY04_06885 PF13185 GAF domain HPY04_06890 PF04352 ProQ/FINO family HPY04_06890 PF17516 ProQ C-terminal domain HPY04_06895 PF17804 Tail specific protease N-terminal domain HPY04_06895 PF03572 Peptidase family S41 HPY04_06895 PF00595 PDZ domain HPY04_06895 PF11818 C-terminal domain of tail specific protease (DUF3340) HPY04_06905 PF01433 Peptidase family M1 domain HPY04_06905 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HPY04_06905 PF11940 Domain of unknown function (DUF3458) Ig-like fold HPY04_06915 PF05088 Bacterial NAD-glutamate dehydrogenase HPY04_06920 PF01180 Dihydroorotate dehydrogenase HPY04_06925 PF07126 Cell-division protein ZapC HPY04_06930 PF01170 Putative RNA methylase family UPF0020 HPY04_06930 PF02926 THUMP domain HPY04_06930 PF10672 S-adenosylmethionine-dependent methyltransferase HPY04_06950 PF04957 Ribosome modulation factor HPY04_06955 PF07977 FabA-like domain HPY04_06960 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY04_06960 PF13654 AAA domain HPY04_06965 PF06303 MatP N-terminal domain HPY04_06965 PF17414 MatP C-terminal ribbon-helix-helix domain HPY04_07060 PF12146 Serine aminopeptidase, S33 HPY04_07060 PF11647 Membrane Localization Domain HPY04_07060 PF11713 Peptidase C80 family HPY04_07060 PF07634 RtxA repeat HPY04_07060 PF16671 Actin cross-linking domain HPY04_07065 PF02794 RTX toxin acyltransferase family HPY04_07075 PF03412 Peptidase C39 family HPY04_07075 PF00005 ABC transporter HPY04_07075 PF00664 ABC transporter transmembrane region HPY04_07085 PF00664 ABC transporter transmembrane region HPY04_07085 PF03412 Peptidase C39 family HPY04_07085 PF00005 ABC transporter HPY04_07090 PF00072 Response regulator receiver domain HPY04_07090 PF00512 His Kinase A (phospho-acceptor) domain HPY04_07090 PF09308 LuxQ, periplasmic HPY04_07090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_07105 PF00115 Cytochrome C and Quinol oxidase polypeptide I HPY04_07120 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HPY04_07120 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY04_07130 PF00403 Heavy-metal-associated domain HPY04_07145 PF00027 Cyclic nucleotide-binding domain HPY04_07145 PF13545 Crp-like helix-turn-helix domain HPY04_07150 PF00582 Universal stress protein family HPY04_07155 PF01171 PP-loop family HPY04_07175 PF08402 TOBE domain HPY04_07175 PF00005 ABC transporter HPY04_07180 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_07185 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_07190 PF13416 Bacterial extracellular solute-binding protein HPY04_07195 PF13416 Bacterial extracellular solute-binding protein HPY04_07210 PF01235 Sodium:alanine symporter family HPY04_07215 PF01810 LysE type translocator HPY04_07260 PF04717 Type VI secretion system, phage-baseplate injector HPY04_07260 PF16671 Actin cross-linking domain HPY04_07265 PF05638 Type VI secretion system effector, Hcp HPY04_07270 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HPY04_07275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_07275 PF02743 Cache domain HPY04_07275 PF00672 HAMP domain HPY04_07280 PF07690 Major Facilitator Superfamily HPY04_07285 PF00529 HlyD membrane-fusion protein of T1SS HPY04_07285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY04_07290 PF02321 Outer membrane efflux protein HPY04_07305 PF00271 Helicase conserved C-terminal domain HPY04_07305 PF00270 DEAD/DEAH box helicase HPY04_07310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_07310 PF08447 PAS fold HPY04_07310 PF13426 PAS domain HPY04_07315 PF00672 HAMP domain HPY04_07315 PF02743 Cache domain HPY04_07315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_07325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_07325 PF00672 HAMP domain HPY04_07325 PF17202 Single cache domain 3 HPY04_07330 PF01584 CheW-like domain HPY04_07335 PF00072 Response regulator receiver domain HPY04_07335 PF01339 CheB methylesterase HPY04_07345 PF01739 CheR methyltransferase, SAM binding domain HPY04_07345 PF03705 CheR methyltransferase, all-alpha domain HPY04_07350 PF01584 CheW-like domain HPY04_07350 PF00072 Response regulator receiver domain HPY04_07350 PF01627 Hpt domain HPY04_07350 PF02895 Signal transducing histidine kinase, homodimeric domain HPY04_07350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_07355 PF02895 Signal transducing histidine kinase, homodimeric domain HPY04_07355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_07355 PF01627 Hpt domain HPY04_07355 PF07194 P2 response regulator binding domain HPY04_07355 PF01584 CheW-like domain HPY04_07365 PF00072 Response regulator receiver domain HPY04_07370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_07370 PF00672 HAMP domain HPY04_07375 PF00893 Small Multidrug Resistance protein HPY04_07380 PF00875 DNA photolyase HPY04_07380 PF03441 FAD binding domain of DNA photolyase HPY04_07385 PF07690 Major Facilitator Superfamily HPY04_07390 PF03466 LysR substrate binding domain HPY04_07390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_07400 PF01979 Amidohydrolase family HPY04_07405 PF03099 Biotin/lipoate A/B protein ligase family HPY04_07405 PF10437 Bacterial lipoate protein ligase C-terminus HPY04_07410 PF00012 Hsp70 protein HPY04_07420 PF11898 Domain of unknown function (DUF3418) HPY04_07420 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HPY04_07420 PF00271 Helicase conserved C-terminal domain HPY04_07420 PF00270 DEAD/DEAH box helicase HPY04_07420 PF04408 Helicase associated domain (HA2) HPY04_07440 PF00563 EAL domain HPY04_07440 PF03707 Bacterial signalling protein N terminal repeat HPY04_07440 PF00990 Diguanylate cyclase, GGDEF domain HPY04_07450 PF00012 Hsp70 protein HPY04_07455 PF00012 Hsp70 protein HPY04_07460 PF00990 Diguanylate cyclase, GGDEF domain HPY04_07460 PF17158 Membrane-associated sensor, integral membrane domain HPY04_07470 PF00563 EAL domain HPY04_07470 PF00990 Diguanylate cyclase, GGDEF domain HPY04_07470 PF03707 Bacterial signalling protein N terminal repeat HPY04_07490 PF06508 Queuosine biosynthesis protein QueC HPY04_07495 PF04055 Radical SAM superfamily HPY04_07505 PF10414 Sirohaem synthase dimerisation region HPY04_07505 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY04_07505 PF14824 Sirohaem biosynthesis protein central HPY04_07510 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY04_07515 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_07520 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_07525 PF00005 ABC transporter HPY04_07530 PF01027 Inhibitor of apoptosis-promoting Bax1 HPY04_07535 PF04358 DsrC like protein HPY04_07540 PF00708 Acylphosphatase HPY04_07545 PF17785 PUA-like domain HPY04_07545 PF10672 S-adenosylmethionine-dependent methyltransferase HPY04_07550 PF00990 Diguanylate cyclase, GGDEF domain HPY04_07555 PF00462 Glutaredoxin HPY04_07555 PF08534 Redoxin HPY04_07560 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY04_07560 PF00672 HAMP domain HPY04_07560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_07560 PF01627 Hpt domain HPY04_07560 PF00072 Response regulator receiver domain HPY04_07560 PF00512 His Kinase A (phospho-acceptor) domain HPY04_07565 PF00072 Response regulator receiver domain HPY04_07570 PF02798 Glutathione S-transferase, N-terminal domain HPY04_07570 PF14497 Glutathione S-transferase, C-terminal domain HPY04_07580 PF04209 homogentisate 1,2-dioxygenase HPY04_07585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY04_07590 PF07687 Peptidase dimerisation domain HPY04_07590 PF01546 Peptidase family M20/M25/M40 HPY04_07605 PF01609 Transposase DDE domain HPY04_07605 PF13006 Insertion element 4 transposase N-terminal HPY04_07610 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY04_07610 PF00501 AMP-binding enzyme HPY04_07610 PF13193 AMP-binding enzyme C-terminal domain HPY04_07615 PF04303 PrpF protein HPY04_07620 PF00694 Aconitase C-terminal domain HPY04_07620 PF00330 Aconitase family (aconitate hydratase) HPY04_07625 PF00285 Citrate synthase, C-terminal domain HPY04_07635 PF00392 Bacterial regulatory proteins, gntR family HPY04_07635 PF07729 FCD domain HPY04_07650 PF01970 Tripartite tricarboxylate transporter TctA family HPY04_07665 PF02653 Branched-chain amino acid transport system / permease component HPY04_07670 PF00005 ABC transporter HPY04_07675 PF13407 Periplasmic binding protein domain HPY04_07695 PF00486 Transcriptional regulatory protein, C terminal HPY04_07695 PF00072 Response regulator receiver domain HPY04_07700 PF00512 His Kinase A (phospho-acceptor) domain HPY04_07700 PF00672 HAMP domain HPY04_07700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_07705 PF06629 MltA-interacting protein MipA HPY04_07710 PF04393 Protein of unknown function (DUF535) HPY04_07715 PF02954 Bacterial regulatory protein, Fis family HPY04_07715 PF00158 Sigma-54 interaction domain HPY04_07715 PF00072 Response regulator receiver domain HPY04_07720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_07720 PF00512 His Kinase A (phospho-acceptor) domain HPY04_07720 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY04_07725 PF00939 Sodium:sulfate symporter transmembrane region HPY04_07730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_07730 PF00672 HAMP domain HPY04_07735 PF01168 Alanine racemase, N-terminal domain HPY04_07735 PF00842 Alanine racemase, C-terminal domain HPY04_07740 PF00892 EamA-like transporter family HPY04_07750 PF13302 Acetyltransferase (GNAT) domain HPY04_07755 PF00158 Sigma-54 interaction domain HPY04_07755 PF18024 Helix-turn-helix domain HPY04_07760 PF05128 Domain of unknown function (DUF697) HPY04_07765 PF04317 YcjX-like family, DUF463 HPY04_07780 PF00425 chorismate binding enzyme HPY04_07780 PF04715 Anthranilate synthase component I, N terminal region HPY04_07785 PF00293 NUDIX domain HPY04_07790 PF03222 Tryptophan/tyrosine permease family HPY04_07795 PF03315 Serine dehydratase beta chain HPY04_07795 PF03313 Serine dehydratase alpha chain HPY04_07800 PF01242 6-pyruvoyl tetrahydropterin synthase HPY04_07805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_07805 PF00672 HAMP domain HPY04_07805 PF12729 Four helix bundle sensory module for signal transduction HPY04_07810 PF01336 OB-fold nucleic acid binding domain HPY04_07810 PF00152 tRNA synthetases class II (D, K and N) HPY04_07815 PF08543 Phosphomethylpyrimidine kinase HPY04_07820 PF00672 HAMP domain HPY04_07820 PF01966 HD domain HPY04_07825 PF00155 Aminotransferase class I and II HPY04_07840 PF00672 HAMP domain HPY04_07840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_07840 PF17200 Single Cache domain 2 HPY04_07845 PF04349 Periplasmic glucan biosynthesis protein, MdoG HPY04_07850 PF13506 Glycosyl transferase family 21 HPY04_07855 PF00356 Bacterial regulatory proteins, lacI family HPY04_07860 PF04794 YdjC-like protein HPY04_07865 PF11975 Family 4 glycosyl hydrolase C-terminal domain HPY04_07865 PF02056 Family 4 glycosyl hydrolase HPY04_07870 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HPY04_07875 PF02378 Phosphotransferase system, EIIC HPY04_07880 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY04_07885 PF01522 Polysaccharide deacetylase HPY04_07890 PF02028 BCCT, betaine/carnitine/choline family transporter HPY04_07895 PF01047 MarR family HPY04_07900 PF00196 Bacterial regulatory proteins, luxR family HPY04_07900 PF00072 Response regulator receiver domain HPY04_07905 PF07730 Histidine kinase HPY04_07905 PF17200 Single Cache domain 2 HPY04_07910 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY04_07920 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY04_07935 PF00753 Metallo-beta-lactamase superfamily HPY04_07940 PF05951 Bacterial protein of unknown function (DUF882) HPY04_07970 PF00925 GTP cyclohydrolase II HPY04_07980 PF07690 Major Facilitator Superfamily HPY04_07995 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY04_07995 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY04_08005 PF02867 Ribonucleotide reductase, barrel domain HPY04_08005 PF03477 ATP cone domain HPY04_08005 PF00317 Ribonucleotide reductase, all-alpha domain HPY04_08010 PF00268 Ribonucleotide reductase, small chain HPY04_08015 PF00175 Oxidoreductase NAD-binding domain HPY04_08015 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY04_08015 PF00970 Oxidoreductase FAD-binding domain HPY04_08025 PF00994 Probable molybdopterin binding domain HPY04_08040 PF00672 HAMP domain HPY04_08040 PF17200 Single Cache domain 2 HPY04_08040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_08055 PF00005 ABC transporter HPY04_08060 PF01032 FecCD transport family HPY04_08065 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HPY04_08075 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HPY04_08080 PF02654 Cobalamin-5-phosphate synthase HPY04_08085 PF02277 Phosphoribosyltransferase HPY04_08090 PF01641 SelR domain HPY04_08100 PF00929 Exonuclease HPY04_08100 PF08411 Exonuclease C-terminal HPY04_08105 PF03788 LrgA family HPY04_08110 PF04172 LrgB-like family HPY04_08115 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HPY04_08115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY04_08125 PF02222 ATP-grasp domain HPY04_08130 PF05724 Thiopurine S-methyltransferase (TPMT) HPY04_08140 PF00216 Bacterial DNA-binding protein HPY04_08145 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HPY04_08145 PF01588 Putative tRNA binding domain HPY04_08145 PF03147 Ferredoxin-fold anticodon binding domain HPY04_08145 PF03484 tRNA synthetase B5 domain HPY04_08145 PF03483 B3/4 domain HPY04_08150 PF01409 tRNA synthetases class II core domain (F) HPY04_08150 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HPY04_08160 PF00072 Response regulator receiver domain HPY04_08160 PF00990 Diguanylate cyclase, GGDEF domain HPY04_08185 PF01066 CDP-alcohol phosphatidyltransferase HPY04_08190 PF01541 GIY-YIG catalytic domain HPY04_08190 PF02151 UvrB/uvrC motif HPY04_08190 PF08459 UvrC Helix-hairpin-helix N-terminal HPY04_08195 PF00072 Response regulator receiver domain HPY04_08195 PF00196 Bacterial regulatory proteins, luxR family HPY04_08200 PF03104 DNA polymerase family B, exonuclease domain HPY04_08200 PF00136 DNA polymerase family B HPY04_08205 PF13426 PAS domain HPY04_08205 PF00990 Diguanylate cyclase, GGDEF domain HPY04_08205 PF00563 EAL domain HPY04_08215 PF01132 Elongation factor P (EF-P) OB domain HPY04_08215 PF09285 Elongation factor P, C-terminal HPY04_08215 PF08207 Elongation factor P (EF-P) KOW-like domain HPY04_08220 PF04269 Protein of unknown function, DUF440 HPY04_08230 PF00392 Bacterial regulatory proteins, gntR family HPY04_08230 PF07702 UTRA domain HPY04_08235 PF01979 Amidohydrolase family HPY04_08240 PF00491 Arginase family HPY04_08245 PF17391 Urocanase N-terminal domain HPY04_08245 PF17392 Urocanase C-terminal domain HPY04_08245 PF01175 Urocanase Rossmann-like domain HPY04_08250 PF00221 Aromatic amino acid lyase HPY04_08265 PF04191 Phospholipid methyltransferase HPY04_08270 PF02913 FAD linked oxidases, C-terminal domain HPY04_08270 PF13183 4Fe-4S dicluster domain HPY04_08270 PF01565 FAD binding domain HPY04_08285 PF00691 OmpA family HPY04_08285 PF13488 Glycine zipper HPY04_08305 PF01259 SAICAR synthetase HPY04_08315 PF03949 Malic enzyme, NAD binding domain HPY04_08315 PF00390 Malic enzyme, N-terminal domain HPY04_08325 PF02698 DUF218 domain HPY04_08330 PF00990 Diguanylate cyclase, GGDEF domain HPY04_08330 PF08448 PAS fold HPY04_08335 PF00266 Aminotransferase class-V HPY04_08345 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY04_08350 PF00664 ABC transporter transmembrane region HPY04_08350 PF00005 ABC transporter HPY04_08355 PF00664 ABC transporter transmembrane region HPY04_08355 PF00005 ABC transporter HPY04_08360 PF01479 S4 domain HPY04_08360 PF00849 RNA pseudouridylate synthase HPY04_08365 PF01300 Telomere recombination HPY04_08370 PF02811 PHP domain HPY04_08375 PF08056 Tryptophan operon leader peptide HPY04_08380 PF04715 Anthranilate synthase component I, N terminal region HPY04_08380 PF00425 chorismate binding enzyme HPY04_08385 PF00117 Glutamine amidotransferase class-I HPY04_08390 PF00591 Glycosyl transferase family, a/b domain HPY04_08390 PF02885 Glycosyl transferase family, helical bundle domain HPY04_08395 PF00218 Indole-3-glycerol phosphate synthase HPY04_08395 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HPY04_08400 PF00291 Pyridoxal-phosphate dependent enzyme HPY04_08405 PF00290 Tryptophan synthase alpha chain HPY04_08410 PF00375 Sodium:dicarboxylate symporter family HPY04_08415 PF00265 Thymidine kinase HPY04_08420 PF01336 OB-fold nucleic acid binding domain HPY04_08420 PF00152 tRNA synthetases class II (D, K and N) HPY04_08420 PF02938 GAD domain HPY04_08425 PF01904 Protein of unknown function DUF72 HPY04_08430 PF13649 Methyltransferase domain HPY04_08435 PF08003 Protein of unknown function (DUF1698) HPY04_08440 PF08443 RimK-like ATP-grasp domain HPY04_08440 PF18030 RimK PreATP-grasp domain HPY04_08455 PF00266 Aminotransferase class-V HPY04_08465 PF00989 PAS fold HPY04_08465 PF00512 His Kinase A (phospho-acceptor) domain HPY04_08465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_08480 PF04993 TfoX N-terminal domain HPY04_08480 PF04994 TfoX C-terminal domain HPY04_08490 PF03956 Lysine exporter LysO HPY04_08500 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY04_08505 PF01380 SIS domain HPY04_08505 PF01418 Helix-turn-helix domain, rpiR family HPY04_08510 PF00465 Iron-containing alcohol dehydrogenase HPY04_08510 PF00171 Aldehyde dehydrogenase family HPY04_08515 PF00462 Glutaredoxin HPY04_08520 PF02080 TrkA-C domain HPY04_08520 PF06826 Predicted Permease Membrane Region HPY04_08525 PF10431 C-terminal, D2-small domain, of ClpB protein HPY04_08525 PF02861 Clp amino terminal domain, pathogenicity island component HPY04_08525 PF17871 AAA lid domain HPY04_08525 PF07724 AAA domain (Cdc48 subfamily) HPY04_08525 PF00004 ATPase family associated with various cellular activities (AAA) HPY04_08530 PF02617 ATP-dependent Clp protease adaptor protein ClpS HPY04_08535 PF00313 'Cold-shock' DNA-binding domain HPY04_08540 PF03971 Monomeric isocitrate dehydrogenase HPY04_08545 PF00849 RNA pseudouridylate synthase HPY04_08550 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HPY04_08550 PF01502 Phosphoribosyl-AMP cyclohydrolase HPY04_08555 PF00977 Histidine biosynthesis protein HPY04_08560 PF00977 Histidine biosynthesis protein HPY04_08565 PF00117 Glutamine amidotransferase class-I HPY04_08570 PF08645 Polynucleotide kinase 3 phosphatase HPY04_08570 PF00475 Imidazoleglycerol-phosphate dehydratase HPY04_08575 PF00155 Aminotransferase class I and II HPY04_08580 PF00815 Histidinol dehydrogenase HPY04_08585 PF01634 ATP phosphoribosyltransferase HPY04_08585 PF08029 HisG, C-terminal domain HPY04_08590 PF03553 Na+/H+ antiporter family HPY04_08595 PF00816 H-NS histone family HPY04_08600 PF00294 pfkB family carbohydrate kinase HPY04_08610 PF04356 Protein of unknown function (DUF489) HPY04_08615 PF08328 Adenylosuccinate lyase C-terminal HPY04_08615 PF00206 Lyase HPY04_08625 PF16036 Chalcone isomerase-like HPY04_08650 PF00106 short chain dehydrogenase HPY04_08660 PF01435 Peptidase family M48 HPY04_08675 PF08241 Methyltransferase domain HPY04_08680 PF00155 Aminotransferase class I and II HPY04_08685 PF04055 Radical SAM superfamily HPY04_08685 PF06968 Biotin and Thiamin Synthesis associated domain HPY04_08690 PF00202 Aminotransferase class-III HPY04_08695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY04_08695 PF02403 Seryl-tRNA synthetase N-terminal domain HPY04_08700 PF12002 MgsA AAA+ ATPase C terminal HPY04_08700 PF00004 ATPase family associated with various cellular activities (AAA) HPY04_08700 PF16193 AAA C-terminal domain HPY04_08705 PF03548 Outer membrane lipoprotein carrier protein LolA HPY04_08710 PF07516 SecA Wing and Scaffold domain HPY04_08710 PF01043 SecA preprotein cross-linking domain HPY04_08710 PF07517 SecA DEAD-like domain HPY04_08710 PF02810 SEC-C motif HPY04_08715 PF01207 Dihydrouridine synthase (Dus) HPY04_08720 PF00990 Diguanylate cyclase, GGDEF domain HPY04_08725 PF00005 ABC transporter HPY04_08730 PF02653 Branched-chain amino acid transport system / permease component HPY04_08740 PF09905 DNA-binding protein VF530 HPY04_08745 PF04217 Protein of unknown function, DUF412 HPY04_08750 PF00871 Acetokinase family HPY04_08755 PF01515 Phosphate acetyl/butaryl transferase HPY04_08755 PF07085 DRTGG domain HPY04_08760 PF13409 Glutathione S-transferase, N-terminal domain HPY04_08765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY04_08765 PF00005 ABC transporter HPY04_08770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY04_08770 PF00005 ABC transporter HPY04_08775 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY04_08775 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_08780 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_08785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY04_08795 PF00072 Response regulator receiver domain HPY04_08795 PF13188 PAS domain HPY04_08795 PF00512 His Kinase A (phospho-acceptor) domain HPY04_08795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_08795 PF08448 PAS fold HPY04_08800 PF00072 Response regulator receiver domain HPY04_08800 PF00158 Sigma-54 interaction domain HPY04_08800 PF02954 Bacterial regulatory protein, Fis family HPY04_08805 PF13188 PAS domain HPY04_08805 PF00990 Diguanylate cyclase, GGDEF domain HPY04_08805 PF00563 EAL domain HPY04_08805 PF03707 Bacterial signalling protein N terminal repeat HPY04_08810 PF00512 His Kinase A (phospho-acceptor) domain HPY04_08810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_08815 PF00989 PAS fold HPY04_08815 PF13188 PAS domain HPY04_08815 PF13426 PAS domain HPY04_08815 PF00512 His Kinase A (phospho-acceptor) domain HPY04_08815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_08825 PF00072 Response regulator receiver domain HPY04_08840 PF01300 Telomere recombination HPY04_08840 PF03481 Putative GTP-binding controlling metal-binding HPY04_08855 PF01161 Phosphatidylethanolamine-binding protein HPY04_08865 PF00704 Glycosyl hydrolases family 18 HPY04_08865 PF06483 Chitinase C HPY04_08880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY04_08880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY04_08885 PF01022 Bacterial regulatory protein, arsR family HPY04_08895 PF00583 Acetyltransferase (GNAT) family HPY04_08900 PF02321 Outer membrane efflux protein HPY04_08905 PF00873 AcrB/AcrD/AcrF family HPY04_08910 PF00529 HlyD membrane-fusion protein of T1SS HPY04_08910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY04_08915 PF00486 Transcriptional regulatory protein, C terminal HPY04_08915 PF00072 Response regulator receiver domain HPY04_08920 PF00989 PAS fold HPY04_08920 PF00512 His Kinase A (phospho-acceptor) domain HPY04_08920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_08920 PF16736 Single Cache-like HPY04_08930 PF08448 PAS fold HPY04_08930 PF00990 Diguanylate cyclase, GGDEF domain HPY04_08940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY04_08955 PF01037 Lrp/AsnC ligand binding domain HPY04_08955 PF13404 AsnC-type helix-turn-helix domain HPY04_08960 PF00291 Pyridoxal-phosphate dependent enzyme HPY04_08965 PF01343 Peptidase family S49 HPY04_08965 PF08496 Peptidase family S49 N-terminal HPY04_08970 PF00106 short chain dehydrogenase HPY04_08975 PF03692 Putative zinc- or iron-chelating domain HPY04_08980 PF03692 Putative zinc- or iron-chelating domain HPY04_08985 PF02132 RecR protein HPY04_08985 PF13662 Toprim domain HPY04_08990 PF02575 YbaB/EbfC DNA-binding family HPY04_08995 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HPY04_08995 PF12170 DNA polymerase III tau subunit V interacting with alpha HPY04_08995 PF12169 DNA polymerase III subunits gamma and tau domain III HPY04_09000 PF00156 Phosphoribosyl transferase domain HPY04_09005 PF04304 Protein of unknown function (DUF454) HPY04_09010 PF00072 Response regulator receiver domain HPY04_09015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_09015 PF03466 LysR substrate binding domain HPY04_09020 PF00881 Nitroreductase family HPY04_09025 PF00378 Enoyl-CoA hydratase/isomerase HPY04_09025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY04_09025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY04_09030 PF00108 Thiolase, N-terminal domain HPY04_09030 PF02803 Thiolase, C-terminal domain HPY04_09035 PF04542 Sigma-70 region 2 HPY04_09035 PF08281 Sigma-70, region 4 HPY04_09045 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY04_09050 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY04_09055 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY04_09060 PF12557 Cob(I)alamin adenosyltransferase N terminal HPY04_09060 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HPY04_09065 PF05170 AsmA family HPY04_09070 PF00485 Phosphoribulokinase / Uridine kinase family HPY04_09075 PF10609 NUBPL iron-transfer P-loop NTPase HPY04_09080 PF09334 tRNA synthetases class I (M) HPY04_09080 PF01588 Putative tRNA binding domain HPY04_09090 PF01048 Phosphorylase superfamily HPY04_09095 PF00403 Heavy-metal-associated domain HPY04_09100 PF00571 CBS domain HPY04_09100 PF01743 Poly A polymerase head domain HPY04_09105 PF00990 Diguanylate cyclase, GGDEF domain HPY04_09105 PF07694 5TMR of 5TMR-LYT HPY04_09110 PF02391 MoaE protein HPY04_09115 PF02597 ThiS family HPY04_09120 PF01967 MoaC family HPY04_09125 PF00994 Probable molybdopterin binding domain HPY04_09130 PF06463 Molybdenum Cofactor Synthesis C HPY04_09130 PF04055 Radical SAM superfamily HPY04_09135 PF01933 Uncharacterised protein family UPF0052 HPY04_09140 PF01627 Hpt domain HPY04_09145 PF02954 Bacterial regulatory protein, Fis family HPY04_09145 PF00158 Sigma-54 interaction domain HPY04_09145 PF00072 Response regulator receiver domain HPY04_09150 PF17757 UvrB interaction domain HPY04_09150 PF12344 Ultra-violet resistance protein B HPY04_09150 PF00271 Helicase conserved C-terminal domain HPY04_09150 PF04851 Type III restriction enzyme, res subunit HPY04_09150 PF02151 UvrB/uvrC motif HPY04_09160 PF02508 Rnf-Nqr subunit, membrane protein HPY04_09165 PF04060 Putative Fe-S cluster HPY04_09170 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HPY04_09170 PF12838 4Fe-4S dicluster domain HPY04_09170 PF13375 RnfC Barrel sandwich hybrid domain HPY04_09170 PF10531 SLBB domain HPY04_09175 PF03116 NQR2, RnfD, RnfE family HPY04_09180 PF04205 FMN-binding domain HPY04_09185 PF02508 Rnf-Nqr subunit, membrane protein HPY04_09190 PF00633 Helix-hairpin-helix motif HPY04_09190 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY04_09190 PF10576 Iron-sulfur binding domain of endonuclease III HPY04_09195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY04_09200 PF10952 Protein of unknown function (DUF2753) HPY04_09205 PF00691 OmpA family HPY04_09205 PF18393 MotY N-terminal domain HPY04_09210 PF00929 Exonuclease HPY04_09215 PF13726 Na+-H+ antiporter family HPY04_09215 PF03553 Na+/H+ antiporter family HPY04_09220 PF00156 Phosphoribosyl transferase domain HPY04_09225 PF02674 Colicin V production protein HPY04_09230 PF05036 Sporulation related domain HPY04_09235 PF02875 Mur ligase family, glutamate ligase domain HPY04_09235 PF08245 Mur ligase middle domain HPY04_09240 PF17848 Acetyl-coA carboxylase zinc finger domain HPY04_09240 PF01039 Carboxyl transferase domain HPY04_09245 PF01416 tRNA pseudouridine synthase HPY04_09255 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HPY04_09255 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY04_09260 PF02378 Phosphotransferase system, EIIC HPY04_09260 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY04_09260 PF00367 phosphotransferase system, EIIB HPY04_09265 PF01979 Amidohydrolase family HPY04_09270 PF00480 ROK family HPY04_09270 PF01047 MarR family HPY04_09275 PF02254 TrkA-N domain HPY04_09275 PF00999 Sodium/hydrogen exchanger family HPY04_09280 PF00733 Asparagine synthase HPY04_09280 PF13537 Glutamine amidotransferase domain HPY04_09285 PF02357 Transcription termination factor nusG HPY04_09290 PF00854 POT family HPY04_09295 PF00762 Ferrochelatase HPY04_09300 PF05191 Adenylate kinase, active site lid HPY04_09305 PF00183 Hsp90 protein HPY04_09305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_09310 PF00486 Transcriptional regulatory protein, C terminal HPY04_09315 PF17323 Trans-membrane regulatory protein ToxS HPY04_09325 PF12850 Calcineurin-like phosphoesterase superfamily domain HPY04_09330 PF08338 Domain of unknown function (DUF1731) HPY04_09330 PF01370 NAD dependent epimerase/dehydratase family HPY04_09335 PF00106 short chain dehydrogenase HPY04_09340 PF00085 Thioredoxin HPY04_09345 PF01145 SPFH domain / Band 7 family HPY04_09345 PF16200 C-terminal region of band_7 HPY04_09350 PF01957 NfeD-like C-terminal, partner-binding HPY04_09355 PF13411 MerR HTH family regulatory protein HPY04_09360 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY04_09365 PF13609 Gram-negative porin HPY04_09370 PF01653 NAD-dependent DNA ligase adenylation domain HPY04_09370 PF03120 NAD-dependent DNA ligase OB-fold domain HPY04_09370 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HPY04_09370 PF12826 Helix-hairpin-helix motif HPY04_09370 PF00533 BRCA1 C Terminus (BRCT) domain HPY04_09375 PF04354 ZipA, C-terminal FtsZ-binding domain HPY04_09385 PF00291 Pyridoxal-phosphate dependent enzyme HPY04_09390 PF00381 PTS HPr component phosphorylation site HPY04_09395 PF05524 PEP-utilising enzyme, N-terminal HPY04_09395 PF00391 PEP-utilising enzyme, mobile domain HPY04_09395 PF02896 PEP-utilising enzyme, TIM barrel domain HPY04_09400 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY04_09405 PF01494 FAD binding domain HPY04_09410 PF00919 Uncharacterized protein family UPF0004 HPY04_09410 PF04055 Radical SAM superfamily HPY04_09410 PF01938 TRAM domain HPY04_09415 PF02562 PhoH-like protein HPY04_09420 PF02130 Uncharacterized protein family UPF0054 HPY04_09425 PF00571 CBS domain HPY04_09425 PF03471 Transporter associated domain HPY04_09430 PF00795 Carbon-nitrogen hydrolase HPY04_09435 PF07295 Zinc-ribbon containing domain HPY04_09440 PF08264 Anticodon-binding domain of tRNA HPY04_09440 PF13603 Leucyl-tRNA synthetase, Domain 2 HPY04_09440 PF00133 tRNA synthetases class I (I, L, M and V) HPY04_09445 PF04390 Lipopolysaccharide-assembly HPY04_09450 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HPY04_09450 PF06144 DNA polymerase III, delta subunit HPY04_09460 PF02590 Predicted SPOUT methyltransferase HPY04_09465 PF03717 Penicillin-binding Protein dimerisation domain HPY04_09465 PF00905 Penicillin binding protein transpeptidase domain HPY04_09470 PF01098 Cell cycle protein HPY04_09475 PF03330 Lytic transglycolase HPY04_09475 PF05036 Sporulation related domain HPY04_09480 PF07943 Penicillin-binding protein 5, C-terminal domain HPY04_09480 PF00768 D-alanyl-D-alanine carboxypeptidase HPY04_09485 PF04359 Protein of unknown function (DUF493) HPY04_09490 PF03099 Biotin/lipoate A/B protein ligase family HPY04_09495 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HPY04_09495 PF04055 Radical SAM superfamily HPY04_09505 PF00464 Serine hydroxymethyltransferase HPY04_09525 PF02706 Chain length determinant protein HPY04_09525 PF13807 G-rich domain on putative tyrosine kinase HPY04_09525 PF13614 AAA domain HPY04_09530 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HPY04_09530 PF02563 Polysaccharide biosynthesis/export protein HPY04_09530 PF10531 SLBB domain HPY04_09540 PF02397 Bacterial sugar transferase HPY04_09555 PF12561 ToxR activated gene A lipoprotein domain HPY04_09555 PF17945 Beta/Gamma crystallin HPY04_09570 PF03808 Glycosyl transferase WecB/TagA/CpsF family HPY04_09580 PF00862 Sucrose synthase HPY04_09580 PF00534 Glycosyl transferases group 1 HPY04_09590 PF13439 Glycosyltransferase Family 4 HPY04_09590 PF00534 Glycosyl transferases group 1 HPY04_09610 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HPY04_09610 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY04_09610 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY04_09615 PF02350 UDP-N-acetylglucosamine 2-epimerase HPY04_09620 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY04_09625 PF00873 AcrB/AcrD/AcrF family HPY04_09630 PF13533 Biotin-lipoyl like HPY04_09655 PF16657 Maltogenic Amylase, C-terminal domain HPY04_09655 PF00128 Alpha amylase, catalytic domain HPY04_09660 PF02378 Phosphotransferase system, EIIC HPY04_09660 PF00367 phosphotransferase system, EIIB HPY04_09665 PF00356 Bacterial regulatory proteins, lacI family HPY04_09675 PF00005 ABC transporter HPY04_09675 PF09383 NIL domain HPY04_09680 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_09685 PF03180 NLPA lipoprotein HPY04_09690 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HPY04_09695 PF07348 Syd protein (SUKH-2) HPY04_09700 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HPY04_09700 PF14489 QueF-like protein HPY04_09710 PF00990 Diguanylate cyclase, GGDEF domain HPY04_09715 PF11892 Domain of unknown function (DUF3412) HPY04_09715 PF03641 Possible lysine decarboxylase HPY04_09715 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HPY04_09720 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY04_09720 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY04_09725 PF04241 Protein of unknown function (DUF423) HPY04_09730 PF03466 LysR substrate binding domain HPY04_09730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_09735 PF02568 Thiamine biosynthesis protein (ThiI) HPY04_09735 PF02926 THUMP domain HPY04_09740 PF00691 OmpA family HPY04_09740 PF13677 Membrane MotB of proton-channel complex MotA/MotB HPY04_09745 PF01618 MotA/TolQ/ExbB proton channel family HPY04_09750 PF02609 Exonuclease VII small subunit HPY04_09755 PF00348 Polyprenyl synthetase HPY04_09760 PF02780 Transketolase, C-terminal domain HPY04_09760 PF02779 Transketolase, pyrimidine binding domain HPY04_09760 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HPY04_09765 PF00849 RNA pseudouridylate synthase HPY04_09770 PF04287 tRNA pseudouridine synthase C HPY04_09785 PF13302 Acetyltransferase (GNAT) domain HPY04_09795 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HPY04_09800 PF03806 AbgT putative transporter family HPY04_09805 PF00444 Ribosomal protein L36 HPY04_09810 PF01197 Ribosomal protein L31 HPY04_09815 PF18389 TrmO C-terminal domain HPY04_09815 PF01980 tRNA-methyltransferase O HPY04_09820 PF03129 Anticodon binding domain HPY04_09820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY04_09820 PF04073 Aminoacyl-tRNA editing domain HPY04_09830 PF01797 Transposase IS200 like HPY04_09840 PF06786 Uncharacterised protein family (UPF0253) HPY04_09850 PF02769 AIR synthase related protein, C-terminal domain HPY04_09850 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HPY04_09850 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HPY04_09855 PF01464 Transglycosylase SLT domain HPY04_09855 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY04_09860 PF14437 MafB19-like deaminase HPY04_09865 PF03806 AbgT putative transporter family HPY04_09890 PF00114 Pilin (bacterial filament) HPY04_09890 PF07963 Prokaryotic N-terminal methylation motif HPY04_09895 PF00684 DnaJ central domain HPY04_09895 PF01556 DnaJ C terminal domain HPY04_09895 PF00226 DnaJ domain HPY04_09900 PF00012 Hsp70 protein HPY04_09905 PF01025 GrpE HPY04_09910 PF01513 ATP-NAD kinase HPY04_09915 PF02463 RecF/RecN/SMC N terminal domain HPY04_09920 PF04355 SmpA / OmlA family HPY04_09925 PF03658 RnfH family Ubiquitin HPY04_09930 PF03364 Polyketide cyclase / dehydrase and lipid transport HPY04_09935 PF01668 SmpB protein HPY04_09945 PF00589 Phage integrase family HPY04_09945 PF13356 Arm DNA-binding domain HPY04_09965 PF04851 Type III restriction enzyme, res subunit HPY04_09965 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) HPY04_09965 PF00271 Helicase conserved C-terminal domain HPY04_09965 PF08463 EcoEI R protein C-terminal HPY04_09970 PF01555 DNA methylase HPY04_09990 PF02384 N-6 DNA Methylase HPY04_09990 PF12161 HsdM N-terminal domain HPY04_09995 PF01420 Type I restriction modification DNA specificity domain HPY04_10010 PF02796 Helix-turn-helix domain of resolvase HPY04_10010 PF00239 Resolvase, N terminal domain HPY04_10030 PF02311 AraC-like ligand binding domain HPY04_10030 PF12833 Helix-turn-helix domain HPY04_10035 PF00817 impB/mucB/samB family HPY04_10035 PF11799 impB/mucB/samB family C-terminal domain HPY04_10035 PF13438 Domain of unknown function (DUF4113) HPY04_10035 PF11798 IMS family HHH motif HPY04_10040 PF00717 Peptidase S24-like HPY04_10105 PF00037 4Fe-4S binding domain HPY04_10105 PF11953 Domain of unknown function (DUF3470) HPY04_10110 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY04_10110 PF00588 SpoU rRNA Methylase family HPY04_10120 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase HPY04_10125 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase HPY04_10130 PF04223 Citrate lyase, alpha subunit (CitF) HPY04_10135 PF03328 HpcH/HpaI aldolase/citrate lyase family HPY04_10140 PF06857 Malonate decarboxylase delta subunit (MdcD) HPY04_10145 PF08218 Citrate lyase ligase C-terminal domain HPY04_10150 PF03390 2-hydroxycarboxylate transporter family HPY04_10155 PF04277 Oxaloacetate decarboxylase, gamma chain HPY04_10160 PF02436 Conserved carboxylase domain HPY04_10160 PF00682 HMGL-like HPY04_10160 PF00364 Biotin-requiring enzyme HPY04_10165 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HPY04_10170 PF17203 Single cache domain 3 HPY04_10170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_10175 PF12431 Transcriptional regulator HPY04_10175 PF00072 Response regulator receiver domain HPY04_10190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_10190 PF03466 LysR substrate binding domain HPY04_10195 PF01266 FAD dependent oxidoreductase HPY04_10200 PF01235 Sodium:alanine symporter family HPY04_10205 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HPY04_10205 PF01648 4'-phosphopantetheinyl transferase superfamily HPY04_10210 PF00005 ABC transporter HPY04_10215 PF01032 FecCD transport family HPY04_10220 PF01032 FecCD transport family HPY04_10225 PF01497 Periplasmic binding protein HPY04_10240 PF00425 chorismate binding enzyme HPY04_10245 PF13193 AMP-binding enzyme C-terminal domain HPY04_10245 PF00501 AMP-binding enzyme HPY04_10250 PF00857 Isochorismatase family HPY04_10250 PF00550 Phosphopantetheine attachment site HPY04_10255 PF01184 GPR1/FUN34/yaaH family HPY04_10260 PF06483 Chitinase C HPY04_10260 PF00704 Glycosyl hydrolases family 18 HPY04_10265 PF00117 Glutamine amidotransferase class-I HPY04_10265 PF00958 GMP synthase C terminal domain HPY04_10265 PF02540 NAD synthase HPY04_10270 PF00478 IMP dehydrogenase / GMP reductase domain HPY04_10270 PF00571 CBS domain HPY04_10275 PF02601 Exonuclease VII, large subunit HPY04_10275 PF13742 OB-fold nucleic acid binding domain HPY04_10290 PF01926 50S ribosome-binding GTPase HPY04_10290 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HPY04_10295 PF13360 PQQ-like domain HPY04_10300 PF09976 Tetratricopeptide repeat-like domain HPY04_10305 PF03129 Anticodon binding domain HPY04_10305 PF13393 Histidyl-tRNA synthetase HPY04_10310 PF04551 GcpE protein HPY04_10315 PF13464 Domain of unknown function (DUF4115) HPY04_10320 PF04055 Radical SAM superfamily HPY04_10325 PF00334 Nucleoside diphosphate kinase HPY04_10330 PF00883 Cytosol aminopeptidase family, catalytic domain HPY04_10330 PF12404 Peptidase HPY04_10335 PF04384 Iron-sulphur cluster assembly HPY04_10340 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY04_10345 PF00012 Hsp70 protein HPY04_10350 PF07743 HSCB C-terminal oligomerisation domain HPY04_10350 PF00226 DnaJ domain HPY04_10355 PF01521 Iron-sulphur cluster biosynthesis HPY04_10360 PF01592 NifU-like N terminal domain HPY04_10365 PF00266 Aminotransferase class-V HPY04_10370 PF02082 Transcriptional regulator HPY04_10375 PF00588 SpoU rRNA Methylase family HPY04_10380 PF00459 Inositol monophosphatase family HPY04_10385 PF02355 Protein export membrane protein HPY04_10385 PF07549 SecD/SecF GG Motif HPY04_10390 PF13721 SecD export protein N-terminal TM region HPY04_10390 PF02355 Protein export membrane protein HPY04_10390 PF07549 SecD/SecF GG Motif HPY04_10395 PF02699 Preprotein translocase subunit HPY04_10400 PF01702 Queuine tRNA-ribosyltransferase HPY04_10405 PF02547 Queuosine biosynthesis protein HPY04_10410 PF00571 CBS domain HPY04_10415 PF00463 Isocitrate lyase family HPY04_10420 PF01274 Malate synthase HPY04_10425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_10425 PF03466 LysR substrate binding domain HPY04_10430 PF00578 AhpC/TSA family HPY04_10430 PF10417 C-terminal domain of 1-Cys peroxiredoxin HPY04_10435 PF03932 CutC family HPY04_10440 PF03976 Polyphosphate kinase 2 (PPK2) HPY04_10445 PF01895 PhoU domain HPY04_10450 PF00005 ABC transporter HPY04_10455 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_10460 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_10465 PF13090 Polyphosphate kinase C-terminal domain 2 HPY04_10465 PF17941 Polyphosphate kinase C-terminal domain 1 HPY04_10465 PF13089 Polyphosphate kinase N-terminal domain HPY04_10465 PF02503 Polyphosphate kinase middle domain HPY04_10470 PF02541 Ppx/GppA phosphatase family HPY04_10475 PF12849 PBP superfamily domain HPY04_10480 PF11808 Phosphate regulon sensor protein PhoR HPY04_10480 PF00512 His Kinase A (phospho-acceptor) domain HPY04_10480 PF00989 PAS fold HPY04_10480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_10485 PF00072 Response regulator receiver domain HPY04_10485 PF00486 Transcriptional regulatory protein, C terminal HPY04_10490 PF04381 Putative exonuclease, RdgC HPY04_10500 PF00037 4Fe-4S binding domain HPY04_10505 PF00881 Nitroreductase family HPY04_10545 PF07724 AAA domain (Cdc48 subfamily) HPY04_10545 PF17871 AAA lid domain HPY04_10545 PF00004 ATPase family associated with various cellular activities (AAA) HPY04_10545 PF02861 Clp amino terminal domain, pathogenicity island component HPY04_10545 PF10431 C-terminal, D2-small domain, of ClpB protein HPY04_10555 PF01479 S4 domain HPY04_10555 PF00849 RNA pseudouridylate synthase HPY04_10560 PF13525 Outer membrane lipoprotein HPY04_10565 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY04_10570 PF00800 Prephenate dehydratase HPY04_10570 PF01817 Chorismate mutase type II HPY04_10575 PF13416 Bacterial extracellular solute-binding protein HPY04_10580 PF00563 EAL domain HPY04_10580 PF00990 Diguanylate cyclase, GGDEF domain HPY04_10585 PF01931 Protein of unknown function DUF84 HPY04_10590 PF01371 Trp repressor protein HPY04_10595 PF01464 Transglycosylase SLT domain HPY04_10595 PF14718 Soluble lytic murein transglycosylase L domain HPY04_10600 PF00005 ABC transporter HPY04_10600 PF12848 ABC transporter HPY04_10605 PF07238 PilZ domain HPY04_10610 PF02153 Prephenate dehydrogenase HPY04_10610 PF01817 Chorismate mutase type II HPY04_10615 PF00793 DAHP synthetase I family HPY04_10620 PF07694 5TMR of 5TMR-LYT HPY04_10620 PF06580 Histidine kinase HPY04_10625 PF04397 LytTr DNA-binding domain HPY04_10625 PF00072 Response regulator receiver domain HPY04_10630 PF00933 Glycosyl hydrolase family 3 N terminal domain HPY04_10635 PF03702 Anhydro-N-acetylmuramic acid kinase HPY04_10640 PF13580 SIS domain HPY04_10650 PF02554 Carbon starvation protein CstA HPY04_10655 PF02401 LytB protein HPY04_10660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY04_10665 PF01252 Signal peptidase (SPase) II HPY04_10670 PF06827 Zinc finger found in FPG and IleRS HPY04_10670 PF08264 Anticodon-binding domain of tRNA HPY04_10670 PF00133 tRNA synthetases class I (I, L, M and V) HPY04_10675 PF06574 FAD synthetase HPY04_10675 PF01687 Riboflavin kinase HPY04_10680 PF03023 Lipid II flippase MurJ HPY04_10685 PF01649 Ribosomal protein S20 HPY04_10690 PF01022 Bacterial regulatory protein, arsR family HPY04_10695 PF03466 LysR substrate binding domain HPY04_10695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_10700 PF02690 Na+/Pi-cotransporter HPY04_10705 PF00303 Thymidylate synthase HPY04_10710 PF01790 Prolipoprotein diacylglyceryl transferase HPY04_10715 PF01925 Sulfite exporter TauE/SafE HPY04_10720 PF02896 PEP-utilising enzyme, TIM barrel domain HPY04_10720 PF00391 PEP-utilising enzyme, mobile domain HPY04_10720 PF05524 PEP-utilising enzyme, N-terminal HPY04_10720 PF01590 GAF domain HPY04_10725 PF00293 NUDIX domain HPY04_10730 PF02976 DNA mismatch repair enzyme MutH HPY04_10735 PF00248 Aldo/keto reductase family HPY04_10745 PF00158 Sigma-54 interaction domain HPY04_10745 PF00072 Response regulator receiver domain HPY04_10745 PF02954 Bacterial regulatory protein, Fis family HPY04_10750 PF00152 tRNA synthetases class II (D, K and N) HPY04_10750 PF01336 OB-fold nucleic acid binding domain HPY04_10760 PF05525 Branched-chain amino acid transport protein HPY04_10765 PF05175 Methyltransferase small domain HPY04_10770 PF00270 DEAD/DEAH box helicase HPY04_10770 PF00271 Helicase conserved C-terminal domain HPY04_10775 PF03144 Elongation factor Tu domain 2 HPY04_10775 PF00009 Elongation factor Tu GTP binding domain HPY04_10775 PF16658 Class II release factor RF3, C-terminal domain HPY04_10780 PF00990 Diguanylate cyclase, GGDEF domain HPY04_10780 PF03707 Bacterial signalling protein N terminal repeat HPY04_10780 PF00563 EAL domain HPY04_10795 PF13508 Acetyltransferase (GNAT) domain HPY04_10800 PF02036 SCP-2 sterol transfer family HPY04_10805 PF03707 Bacterial signalling protein N terminal repeat HPY04_10805 PF00563 EAL domain HPY04_10805 PF00990 Diguanylate cyclase, GGDEF domain HPY04_10810 PF01136 Peptidase family U32 HPY04_10815 PF01136 Peptidase family U32 HPY04_10830 PF13181 Tetratricopeptide repeat HPY04_10830 PF07719 Tetratricopeptide repeat HPY04_10835 PF00013 KH domain HPY04_10835 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HPY04_10835 PF00575 S1 RNA binding domain HPY04_10835 PF01138 3' exoribonuclease family, domain 1 HPY04_10835 PF03725 3' exoribonuclease family, domain 2 HPY04_10840 PF00312 Ribosomal protein S15 HPY04_10845 PF01509 TruB family pseudouridylate synthase (N terminal domain) HPY04_10845 PF16198 tRNA pseudouridylate synthase B C-terminal domain HPY04_10845 PF09157 Pseudouridine synthase II TruB, C-terminal HPY04_10850 PF02033 Ribosome-binding factor A HPY04_10855 PF11987 Translation-initiation factor 2 HPY04_10855 PF04760 Translation initiation factor IF-2, N-terminal region HPY04_10855 PF08364 Bacterial translation initiation factor IF-2 associated region HPY04_10855 PF00009 Elongation factor Tu GTP binding domain HPY04_10860 PF00575 S1 RNA binding domain HPY04_10860 PF08529 NusA N-terminal domain HPY04_10860 PF13184 NusA-like KH domain HPY04_10865 PF02576 RimP N-terminal domain HPY04_10865 PF17384 RimP C-terminal SH3 domain HPY04_10880 PF03840 Preprotein translocase SecG subunit HPY04_10885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY04_10885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY04_10885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY04_10885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY04_10890 PF00809 Pterin binding enzyme HPY04_10895 PF00004 ATPase family associated with various cellular activities (AAA) HPY04_10895 PF06480 FtsH Extracellular HPY04_10895 PF17862 AAA+ lid domain HPY04_10895 PF01434 Peptidase family M41 HPY04_10900 PF01728 FtsJ-like methyltransferase HPY04_10905 PF01985 CRS1 / YhbY (CRM) domain HPY04_10910 PF03449 Transcription elongation factor, N-terminal HPY04_10910 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY04_10915 PF13609 Gram-negative porin HPY04_10920 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HPY04_10925 PF01479 S4 domain HPY04_10925 PF00579 tRNA synthetases class I (W and Y) HPY04_10930 PF01551 Peptidase family M23 HPY04_10930 PF04225 Opacity-associated protein A LysM-like domain HPY04_10935 PF00873 AcrB/AcrD/AcrF family HPY04_10945 PF01521 Iron-sulphur cluster biosynthesis HPY04_10950 PF00202 Aminotransferase class-III HPY04_10955 PF01594 AI-2E family transporter HPY04_10960 PF08468 Methyltransferase small domain N-terminal HPY04_10960 PF05175 Methyltransferase small domain HPY04_10965 PF09308 LuxQ, periplasmic HPY04_10965 PF00072 Response regulator receiver domain HPY04_10965 PF00512 His Kinase A (phospho-acceptor) domain HPY04_10965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_10970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY04_10975 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_10980 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_10980 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY04_10985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY04_10985 PF00005 ABC transporter HPY04_10990 PF00005 ABC transporter HPY04_10990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY04_11000 PF01869 BadF/BadG/BcrA/BcrD ATPase family HPY04_11005 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY04_11005 PF02838 Glycosyl hydrolase family 20, domain 2 HPY04_11010 PF06165 Glycosyltransferase family 36 HPY04_11010 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain HPY04_11015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY04_11015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY04_11015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY04_11015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY04_11020 PF00005 ABC transporter HPY04_11020 PF08402 TOBE domain HPY04_11030 PF13416 Bacterial extracellular solute-binding protein HPY04_11035 PF00909 Ammonium Transporter Family HPY04_11040 PF00543 Nitrogen regulatory protein P-II HPY04_11045 PF06062 Uncharacterised protein family (UPF0231) HPY04_11050 PF06434 Aconitate hydratase 2 N-terminus HPY04_11050 PF00330 Aconitase family (aconitate hydratase) HPY04_11050 PF11791 Aconitate B N-terminal domain HPY04_11055 PF01734 Patatin-like phospholipase HPY04_11060 PF14814 Bifunctional transglycosylase second domain HPY04_11060 PF00912 Transglycosylase HPY04_11060 PF00905 Penicillin binding protein transpeptidase domain HPY04_11065 PF08482 ATP-dependent helicase C-terminal HPY04_11065 PF04408 Helicase associated domain (HA2) HPY04_11065 PF00270 DEAD/DEAH box helicase HPY04_11065 PF00271 Helicase conserved C-terminal domain HPY04_11075 PF17746 SfsA N-terminal OB domain HPY04_11075 PF03749 Sugar fermentation stimulation protein RE domain HPY04_11080 PF01258 Prokaryotic dksA/traR C4-type zinc finger HPY04_11085 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY04_11090 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY04_11090 PF01743 Poly A polymerase head domain HPY04_11090 PF12626 Polymerase A arginine-rich C-terminus HPY04_11095 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY04_11100 PF02548 Ketopantoate hydroxymethyltransferase HPY04_11105 PF02569 Pantoate-beta-alanine ligase HPY04_11110 PF01061 ABC-2 type transporter HPY04_11115 PF00005 ABC transporter HPY04_11120 PF01740 STAS domain HPY04_11120 PF00916 Sulfate permease family HPY04_11125 PF00484 Carbonic anhydrase HPY04_11130 PF00156 Phosphoribosyl transferase domain HPY04_11135 PF00440 Bacterial regulatory proteins, tetR family HPY04_11140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY04_11145 PF04348 LppC putative lipoprotein HPY04_11150 PF02021 Uncharacterised protein family UPF0102 HPY04_11155 PF13580 SIS domain HPY04_11160 PF04972 BON domain HPY04_11165 PF04386 Stringent starvation protein B HPY04_11170 PF02798 Glutathione S-transferase, N-terminal domain HPY04_11170 PF00043 Glutathione S-transferase, C-terminal domain HPY04_11175 PF02167 Cytochrome C1 family HPY04_11180 PF00032 Cytochrome b(C-terminal)/b6/petD HPY04_11180 PF00033 Cytochrome b/b6/petB HPY04_11185 PF00355 Rieske [2Fe-2S] domain HPY04_11185 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HPY04_11190 PF00380 Ribosomal protein S9/S16 HPY04_11195 PF00572 Ribosomal protein L13 HPY04_11200 PF03969 AFG1-like ATPase HPY04_11210 PF00595 PDZ domain HPY04_11215 PF13180 PDZ domain HPY04_11220 PF01245 Ribosomal protein L19 HPY04_11225 PF01746 tRNA (Guanine-1)-methyltransferase HPY04_11230 PF05239 PRC-barrel domain HPY04_11230 PF01782 RimM N-terminal domain HPY04_11235 PF00886 Ribosomal protein S16 HPY04_11240 PF00448 SRP54-type protein, GTPase domain HPY04_11240 PF02978 Signal peptide binding domain HPY04_11240 PF02881 SRP54-type protein, helical bundle domain HPY04_11245 PF01578 Cytochrome C assembly protein HPY04_11250 PF03471 Transporter associated domain HPY04_11250 PF00571 CBS domain HPY04_11250 PF01595 Cyclin M transmembrane N-terminal domain HPY04_11255 PF02664 S-Ribosylhomocysteinase (LuxS) HPY04_11260 PF04262 Glutamate-cysteine ligase HPY04_11265 PF00675 Insulinase (Peptidase family M16) HPY04_11265 PF05193 Peptidase M16 inactive domain HPY04_11270 PF09335 SNARE associated Golgi protein HPY04_11280 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HPY04_11285 PF02436 Conserved carboxylase domain HPY04_11285 PF00682 HMGL-like HPY04_11285 PF00364 Biotin-requiring enzyme HPY04_11290 PF04277 Oxaloacetate decarboxylase, gamma chain HPY04_11335 PF02599 Global regulator protein family HPY04_11340 PF13840 ACT domain HPY04_11340 PF00696 Amino acid kinase family HPY04_11340 PF01842 ACT domain HPY04_11345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY04_11345 PF01411 tRNA synthetases class II (A) HPY04_11345 PF02272 DHHA1 domain HPY04_11350 PF02631 RecX family HPY04_11355 PF00154 recA bacterial DNA recombination protein HPY04_11360 PF02464 Competence-damaged protein HPY04_11365 PF00005 ABC transporter HPY04_11365 PF12857 TOBE-like domain HPY04_11370 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_11375 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_11385 PF00291 Pyridoxal-phosphate dependent enzyme HPY04_11390 PF05188 MutS domain II HPY04_11390 PF05192 MutS domain III HPY04_11390 PF01624 MutS domain I HPY04_11390 PF00488 MutS domain V HPY04_11390 PF05190 MutS family domain IV HPY04_11395 PF04545 Sigma-70, region 4 HPY04_11395 PF04539 Sigma-70 region 3 HPY04_11395 PF04542 Sigma-70 region 2 HPY04_11395 PF00140 Sigma-70 factor, region 1.2 HPY04_11400 PF01476 LysM domain HPY04_11400 PF01551 Peptidase family M23 HPY04_11410 PF01975 Survival protein SurE HPY04_11415 PF01142 tRNA pseudouridine synthase D (TruD) HPY04_11420 PF02542 YgbB family HPY04_11425 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HPY04_11430 PF04977 Septum formation initiator HPY04_11435 PF02673 Bacitracin resistance protein BacA HPY04_11440 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY04_11445 PF02152 Dihydroneopterin aldolase HPY04_11450 PF02660 Glycerol-3-phosphate acyltransferase HPY04_11455 PF00561 alpha/beta hydrolase fold HPY04_11460 PF00814 Glycoprotease family HPY04_11465 PF01165 Ribosomal protein S21 HPY04_11470 PF09424 Yqey-like protein HPY04_11475 PF10410 DnaB-helicase binding domain of primase HPY04_11475 PF01807 CHC2 zinc finger HPY04_11475 PF08275 DNA primase catalytic core, N-terminal domain HPY04_11475 PF08278 DNA primase DnaG DnaB-binding HPY04_11480 PF03979 Sigma-70 factor, region 1.1 HPY04_11480 PF00140 Sigma-70 factor, region 1.2 HPY04_11480 PF04545 Sigma-70, region 4 HPY04_11480 PF04539 Sigma-70 region 3 HPY04_11480 PF04542 Sigma-70 region 2 HPY04_11480 PF04546 Sigma-70, non-essential region HPY04_11495 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY04_11500 PF01380 SIS domain HPY04_11505 PF00455 DeoR C terminal sensor domain HPY04_11505 PF08220 DeoR-like helix-turn-helix domain HPY04_11510 PF00224 Pyruvate kinase, barrel domain HPY04_11510 PF02887 Pyruvate kinase, alpha/beta domain HPY04_11515 PF04402 Protein of unknown function (DUF541) HPY04_11520 PF03466 LysR substrate binding domain HPY04_11520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_11525 PF01810 LysE type translocator HPY04_11530 PF00924 Mechanosensitive ion channel HPY04_11530 PF05552 Conserved TM helix HPY04_11535 PF01116 Fructose-bisphosphate aldolase class-II HPY04_11540 PF00162 Phosphoglycerate kinase HPY04_11545 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY04_11545 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY04_11550 PF07715 TonB-dependent Receptor Plug Domain HPY04_11550 PF00593 TonB dependent receptor HPY04_11555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_11555 PF03466 LysR substrate binding domain HPY04_11560 PF00456 Transketolase, thiamine diphosphate binding domain HPY04_11560 PF02779 Transketolase, pyrimidine binding domain HPY04_11560 PF02780 Transketolase, C-terminal domain HPY04_11565 PF02773 S-adenosylmethionine synthetase, C-terminal domain HPY04_11565 PF00438 S-adenosylmethionine synthetase, N-terminal domain HPY04_11565 PF02772 S-adenosylmethionine synthetase, central domain HPY04_11570 PF17283 SprT-like zinc ribbon domain HPY04_11570 PF10263 SprT-like family HPY04_11575 PF04231 Endonuclease I HPY04_11580 PF04452 RNA methyltransferase HPY04_11585 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HPY04_11585 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HPY04_11590 PF02622 Uncharacterized ACR, COG1678 HPY04_11595 PF03652 Holliday junction resolvase HPY04_11600 PF00579 tRNA synthetases class I (W and Y) HPY04_11600 PF01479 S4 domain HPY04_11610 PF00437 Type II/IV secretion system protein HPY04_11615 PF00437 Type II/IV secretion system protein HPY04_11620 PF01168 Alanine racemase, N-terminal domain HPY04_11625 PF03807 NADP oxidoreductase coenzyme F420-dependent HPY04_11625 PF14748 Pyrroline-5-carboxylate reductase dimerisation HPY04_11630 PF02325 YGGT family HPY04_11635 PF02594 Uncharacterised ACR, YggU family COG1872 HPY04_11645 PF01725 Ham1 family HPY04_11650 PF04055 Radical SAM superfamily HPY04_11650 PF06969 HemN C-terminal domain HPY04_11655 PF04960 Glutaminase HPY04_11660 PF02390 Putative methyltransferase HPY04_11665 PF10576 Iron-sulfur binding domain of endonuclease III HPY04_11665 PF00633 Helix-hairpin-helix motif HPY04_11665 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY04_11665 PF14815 NUDIX domain HPY04_11670 PF04362 Bacterial Fe(2+) trafficking HPY04_11675 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HPY04_11675 PF01464 Transglycosylase SLT domain HPY04_11700 PF12729 Four helix bundle sensory module for signal transduction HPY04_11700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_11700 PF00672 HAMP domain HPY04_11730 PF00226 DnaJ domain HPY04_11730 PF05099 Tellurite resistance protein TerB HPY04_11735 PF03968 OstA-like protein HPY04_11735 PF04453 LPS transport system D HPY04_11740 PF09312 SurA N-terminal domain HPY04_11745 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HPY04_11750 PF00398 Ribosomal RNA adenine dimethylase HPY04_11755 PF04379 ApaG domain HPY04_11760 PF00149 Calcineurin-like phosphoesterase HPY04_11765 PF00186 Dihydrofolate reductase HPY04_11770 PF12821 Threonine/Serine exporter, ThrE HPY04_11775 PF06738 Putative threonine/serine exporter HPY04_11780 PF01018 GTP1/OBG HPY04_11780 PF01926 50S ribosome-binding GTPase HPY04_11785 PF01016 Ribosomal L27 protein HPY04_11790 PF00829 Ribosomal prokaryotic L21 protein HPY04_11795 PF00348 Polyprenyl synthetase HPY04_11800 PF13520 Amino acid permease HPY04_11805 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HPY04_11805 PF00056 lactate/malate dehydrogenase, NAD binding domain HPY04_11810 PF02863 Arginine repressor, C-terminal domain HPY04_11810 PF01316 Arginine repressor, DNA binding domain HPY04_11815 PF16868 NMT1-like family HPY04_11825 PF00582 Universal stress protein family HPY04_11840 PF06877 Regulator of ribonuclease activity B HPY04_11850 PF01523 Putative modulator of DNA gyrase HPY04_11855 PF00795 Carbon-nitrogen hydrolase HPY04_11860 PF13116 Protein of unknown function HPY04_11860 PF13502 AsmA-like C-terminal region HPY04_11865 PF10150 Ribonuclease E/G family HPY04_11865 PF00575 S1 RNA binding domain HPY04_11870 PF02545 Maf-like protein HPY04_11875 PF04093 rod shape-determining protein MreD HPY04_11880 PF04085 rod shape-determining protein MreC HPY04_11915 PF00114 Pilin (bacterial filament) HPY04_11915 PF07963 Prokaryotic N-terminal methylation motif HPY04_11920 PF07963 Prokaryotic N-terminal methylation motif HPY04_11920 PF00114 Pilin (bacterial filament) HPY04_11930 PF00482 Type II secretion system (T2SS), protein F HPY04_11935 PF00437 Type II/IV secretion system protein HPY04_11945 PF13401 AAA domain HPY04_11945 PF01471 Putative peptidoglycan binding domain HPY04_11950 PF11741 AMIN domain HPY04_11950 PF00263 Bacterial type II and III secretion system protein HPY04_11950 PF03958 Bacterial type II/III secretion system short domain HPY04_11950 PF07660 Secretin and TonB N terminus short domain HPY04_11970 PF00563 EAL domain HPY04_11970 PF00990 Diguanylate cyclase, GGDEF domain HPY04_11970 PF17157 Gammaproteobacterial periplasmic sensor domain HPY04_11980 PF02463 RecF/RecN/SMC N terminal domain HPY04_11985 PF01420 Type I restriction modification DNA specificity domain HPY04_11990 PF12161 HsdM N-terminal domain HPY04_11990 PF02384 N-6 DNA Methylase HPY04_11995 PF04851 Type III restriction enzyme, res subunit HPY04_11995 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) HPY04_11995 PF00271 Helicase conserved C-terminal domain HPY04_11995 PF08463 EcoEI R protein C-terminal HPY04_12025 PF00436 Single-strand binding protein family HPY04_12030 PF00196 Bacterial regulatory proteins, luxR family HPY04_12035 PF00483 Nucleotidyl transferase HPY04_12040 PF17755 UvrA DNA-binding domain HPY04_12040 PF00005 ABC transporter HPY04_12040 PF17760 UvrA interaction domain HPY04_12050 PF01609 Transposase DDE domain HPY04_12050 PF02281 Transposase Tn5 dimerisation domain HPY04_12050 PF14706 Transposase DNA-binding HPY04_12055 PF00266 Aminotransferase class-V HPY04_12060 PF00696 Amino acid kinase family HPY04_12060 PF01842 ACT domain HPY04_12065 PF02607 B12 binding domain HPY04_12065 PF02965 Vitamin B12 dependent methionine synthase, activation domain HPY04_12065 PF02310 B12 binding domain HPY04_12065 PF00809 Pterin binding enzyme HPY04_12065 PF02574 Homocysteine S-methyltransferase HPY04_12070 PF00999 Sodium/hydrogen exchanger family HPY04_12130 PF01507 Phosphoadenosine phosphosulfate reductase family HPY04_12135 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HPY04_12135 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HPY04_12140 PF00175 Oxidoreductase NAD-binding domain HPY04_12140 PF00258 Flavodoxin HPY04_12140 PF00667 FAD binding domain HPY04_12160 PF09583 Phage shock protein G (Phageshock_PspG) HPY04_12165 PF01207 Dihydrouridine synthase (Dus) HPY04_12170 PF01475 Ferric uptake regulator family HPY04_12180 PF12706 Beta-lactamase superfamily domain HPY04_12185 PF00342 Phosphoglucose isomerase HPY04_12195 PF01168 Alanine racemase, N-terminal domain HPY04_12195 PF00842 Alanine racemase, C-terminal domain HPY04_12200 PF03796 DnaB-like helicase C terminal domain HPY04_12200 PF00772 DnaB-like helicase N terminal domain HPY04_12210 PF01281 Ribosomal protein L9, N-terminal domain HPY04_12210 PF03948 Ribosomal protein L9, C-terminal domain HPY04_12215 PF01084 Ribosomal protein S18 HPY04_12220 PF00436 Single-strand binding protein family HPY04_12225 PF01250 Ribosomal protein S6 HPY04_12230 PF00210 Ferritin-like domain HPY04_12235 PF04324 BFD-like [2Fe-2S] binding domain HPY04_12240 PF03144 Elongation factor Tu domain 2 HPY04_12240 PF03143 Elongation factor Tu C-terminal domain HPY04_12240 PF00009 Elongation factor Tu GTP binding domain HPY04_12245 PF03764 Elongation factor G, domain IV HPY04_12245 PF14492 Elongation Factor G, domain II HPY04_12245 PF00009 Elongation factor Tu GTP binding domain HPY04_12245 PF00679 Elongation factor G C-terminus HPY04_12245 PF03144 Elongation factor Tu domain 2 HPY04_12250 PF00177 Ribosomal protein S7p/S5e HPY04_12255 PF00164 Ribosomal protein S12/S23 HPY04_12265 PF02635 DsrE/DsrF-like family HPY04_12270 PF02635 DsrE/DsrF-like family HPY04_12275 PF13309 HTH domain HPY04_12275 PF08348 YheO-like PAS domain HPY04_12280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY04_12280 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY04_12290 PF04102 SlyX HPY04_12295 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HPY04_12300 PF01145 SPFH domain / Band 7 family HPY04_12305 PF12221 Bacterial membrane protein N terminal HPY04_12305 PF01145 SPFH domain / Band 7 family HPY04_12310 PF01926 50S ribosome-binding GTPase HPY04_12310 PF16360 GTP-binding GTPase Middle Region HPY04_12310 PF13167 GTP-binding GTPase N-terminal HPY04_12315 PF17209 Hfq protein HPY04_12325 PF01119 DNA mismatch repair protein, C-terminal domain HPY04_12325 PF08676 MutL C terminal dimerisation domain HPY04_12330 PF01520 N-acetylmuramoyl-L-alanine amidase HPY04_12335 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HPY04_12340 PF08331 Domain of unknown function (DUF1730) HPY04_12390 PF00929 Exonuclease HPY04_12395 PF03193 RsgA GTPase HPY04_12400 PF02666 Phosphatidylserine decarboxylase HPY04_12405 PF00939 Sodium:sulfate symporter transmembrane region HPY04_12415 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HPY04_12415 PF01676 Metalloenzyme superfamily HPY04_12420 PF01551 Peptidase family M23 HPY04_12435 PF01208 Uroporphyrinogen decarboxylase (URO-D) HPY04_12440 PF09297 NADH pyrophosphatase zinc ribbon domain HPY04_12440 PF00293 NUDIX domain HPY04_12445 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HPY04_12450 PF00623 RNA polymerase Rpb1, domain 2 HPY04_12450 PF04997 RNA polymerase Rpb1, domain 1 HPY04_12450 PF05000 RNA polymerase Rpb1, domain 4 HPY04_12450 PF04983 RNA polymerase Rpb1, domain 3 HPY04_12450 PF04998 RNA polymerase Rpb1, domain 5 HPY04_12455 PF04561 RNA polymerase Rpb2, domain 2 HPY04_12455 PF04560 RNA polymerase Rpb2, domain 7 HPY04_12455 PF04565 RNA polymerase Rpb2, domain 3 HPY04_12455 PF10385 RNA polymerase beta subunit external 1 domain HPY04_12455 PF04563 RNA polymerase beta subunit HPY04_12455 PF00562 RNA polymerase Rpb2, domain 6 HPY04_12460 PF00542 Ribosomal protein L7/L12 C-terminal domain HPY04_12460 PF16320 Ribosomal protein L7/L12 dimerisation domain HPY04_12465 PF00466 Ribosomal protein L10 HPY04_12470 PF00687 Ribosomal protein L1p/L10e family HPY04_12475 PF03946 Ribosomal protein L11, N-terminal domain HPY04_12475 PF00298 Ribosomal protein L11, RNA binding domain HPY04_12480 PF00467 KOW motif HPY04_12480 PF02357 Transcription termination factor nusG HPY04_12485 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HPY04_12490 PF03144 Elongation factor Tu domain 2 HPY04_12490 PF00009 Elongation factor Tu GTP binding domain HPY04_12490 PF03143 Elongation factor Tu C-terminal domain HPY04_12515 PF00485 Phosphoribulokinase / Uridine kinase family HPY04_12520 PF02237 Biotin protein ligase C terminal domain HPY04_12520 PF03099 Biotin/lipoate A/B protein ligase family HPY04_12520 PF08279 HTH domain HPY04_12525 PF01565 FAD binding domain HPY04_12525 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HPY04_12535 PF13091 PLD-like domain HPY04_12570 PF00175 Oxidoreductase NAD-binding domain HPY04_12575 PF00175 Oxidoreductase NAD-binding domain HPY04_12575 PF00970 Oxidoreductase FAD-binding domain HPY04_12575 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY04_12580 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HPY04_12590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY04_12590 PF07498 Rho termination factor, N-terminal domain HPY04_12590 PF07497 Rho termination factor, RNA-binding domain HPY04_12595 PF00085 Thioredoxin HPY04_12600 PF00271 Helicase conserved C-terminal domain HPY04_12600 PF00270 DEAD/DEAH box helicase HPY04_12610 PF00512 His Kinase A (phospho-acceptor) domain HPY04_12610 PF09456 RcsC Alpha-Beta-Loop (ABL) HPY04_12610 PF00072 Response regulator receiver domain HPY04_12610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_12615 PF12832 MFS_1 like family HPY04_12630 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY04_12630 PF13193 AMP-binding enzyme C-terminal domain HPY04_12630 PF00501 AMP-binding enzyme HPY04_12635 PF01220 Dehydroquinase class II HPY04_12640 PF00364 Biotin-requiring enzyme HPY04_12645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HPY04_12645 PF00289 Biotin carboxylase, N-terminal domain HPY04_12645 PF02785 Biotin carboxylase C-terminal domain HPY04_12655 PF01207 Dihydrouridine synthase (Dus) HPY04_12660 PF02954 Bacterial regulatory protein, Fis family HPY04_12665 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY04_12665 PF00356 Bacterial regulatory proteins, lacI family HPY04_12670 PF00920 Dehydratase family HPY04_12675 PF01202 Shikimate kinase HPY04_12680 PF02447 GntP family permease HPY04_12685 PF01081 KDPG and KHG aldolase HPY04_12690 PF07715 TonB-dependent Receptor Plug Domain HPY04_12690 PF00593 TonB dependent receptor HPY04_12705 PF17200 Single Cache domain 2 HPY04_12705 PF00672 HAMP domain HPY04_12705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_12710 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HPY04_12710 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HPY04_12710 PF01276 Orn/Lys/Arg decarboxylase, major domain HPY04_12715 PF13520 Amino acid permease HPY04_12720 PF18500 CadC C-terminal domain 1 HPY04_12720 PF00486 Transcriptional regulatory protein, C terminal HPY04_12725 PF13411 MerR HTH family regulatory protein HPY04_12735 PF01808 AICARFT/IMPCHase bienzyme HPY04_12735 PF02142 MGS-like domain HPY04_12740 PF02843 Phosphoribosylglycinamide synthetase, C domain HPY04_12740 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HPY04_12740 PF02844 Phosphoribosylglycinamide synthetase, N domain HPY04_12750 PF00216 Bacterial DNA-binding protein HPY04_12755 PF00571 CBS domain HPY04_12755 PF01595 Cyclin M transmembrane N-terminal domain HPY04_12765 PF02281 Transposase Tn5 dimerisation domain HPY04_12765 PF01609 Transposase DDE domain HPY04_12765 PF14706 Transposase DNA-binding HPY04_12770 PF04222 Protein of unknown function (DUF416) HPY04_12775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY04_12780 PF03167 Uracil DNA glycosylase superfamily HPY04_12785 PF00924 Mechanosensitive ion channel HPY04_12800 PF10996 Beta-Casp domain HPY04_12800 PF00753 Metallo-beta-lactamase superfamily HPY04_12800 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HPY04_12810 PF00953 Glycosyl transferase family 4 HPY04_12815 PF00534 Glycosyl transferases group 1 HPY04_12815 PF13477 Glycosyl transferase 4-like HPY04_12840 PF01370 NAD dependent epimerase/dehydratase family HPY04_12845 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY04_12845 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY04_12845 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HPY04_12850 PF02706 Chain length determinant protein HPY04_12850 PF13614 AAA domain HPY04_12850 PF13807 G-rich domain on putative tyrosine kinase HPY04_12855 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY04_12860 PF10531 SLBB domain HPY04_12860 PF02563 Polysaccharide biosynthesis/export protein HPY04_12860 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HPY04_12870 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF HPY04_12880 PF06082 Exopolysaccharide biosynthesis protein YbjH HPY04_12890 PF02397 Bacterial sugar transferase HPY04_12895 PF01370 NAD dependent epimerase/dehydratase family HPY04_12900 PF02719 Polysaccharide biosynthesis protein HPY04_12920 PF05523 WxcM-like, C-terminal HPY04_12925 PF00535 Glycosyl transferase family 2 HPY04_12930 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HPY04_12940 PF13649 Methyltransferase domain HPY04_12945 PF00005 ABC transporter HPY04_12955 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HPY04_12960 PF04321 RmlD substrate binding domain HPY04_12965 PF00483 Nucleotidyl transferase HPY04_12970 PF16363 GDP-mannose 4,6 dehydratase HPY04_12975 PF01370 NAD dependent epimerase/dehydratase family HPY04_12985 PF00535 Glycosyl transferase family 2 HPY04_12990 PF01522 Polysaccharide deacetylase HPY04_12990 PF00457 Glycosyl hydrolases family 11 HPY04_12995 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY04_13000 PF04488 Glycosyltransferase sugar-binding region containing DXD motif HPY04_13005 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HPY04_13010 PF00583 Acetyltransferase (GNAT) family HPY04_13015 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HPY04_13035 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY04_13040 PF00535 Glycosyl transferase family 2 HPY04_13045 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY04_13050 PF01467 Cytidylyltransferase-like HPY04_13055 PF06827 Zinc finger found in FPG and IleRS HPY04_13055 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HPY04_13055 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HPY04_13065 PF00471 Ribosomal protein L33 HPY04_13070 PF00830 Ribosomal L28 family HPY04_13075 PF04002 RadC-like JAB domain HPY04_13080 PF00672 HAMP domain HPY04_13080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_13080 PF02743 Cache domain HPY04_13085 PF04127 DNA / pantothenate metabolism flavoprotein HPY04_13085 PF02441 Flavoprotein HPY04_13095 PF00440 Bacterial regulatory proteins, tetR family HPY04_13100 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY04_13105 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY04_13110 PF00156 Phosphoribosyl transferase domain HPY04_13115 PF03725 3' exoribonuclease family, domain 2 HPY04_13115 PF01138 3' exoribonuclease family, domain 1 HPY04_13120 PF03755 YicC-like family, N-terminal region HPY04_13120 PF08340 Domain of unknown function (DUF1732) HPY04_13135 PF00004 ATPase family associated with various cellular activities (AAA) HPY04_13140 PF00082 Subtilase family HPY04_13185 PF18272 single-stranded DNA binding TraI N-terminal subdomain HPY04_13185 PF18340 DNA relaxase TraI 2B/2B-like domain HPY04_13185 PF08751 TrwC relaxase HPY04_13185 PF07057 DNA helicase TraI HPY04_13265 PF03350 Uncharacterized protein family, UPF0114 HPY04_13270 PF02378 Phosphotransferase system, EIIC HPY04_13270 PF00367 phosphotransferase system, EIIB HPY04_13275 PF13580 SIS domain HPY04_13280 PF01380 SIS domain HPY04_13280 PF01418 Helix-turn-helix domain, rpiR family HPY04_13285 PF01032 FecCD transport family HPY04_13290 PF01497 Periplasmic binding protein HPY04_13295 PF00005 ABC transporter HPY04_13300 PF07715 TonB-dependent Receptor Plug Domain HPY04_13300 PF00593 TonB dependent receptor HPY04_13305 PF00005 ABC transporter HPY04_13305 PF00664 ABC transporter transmembrane region HPY04_13320 PF00570 HRDC domain HPY04_13320 PF09382 RQC domain HPY04_13320 PF00270 DEAD/DEAH box helicase HPY04_13320 PF00271 Helicase conserved C-terminal domain HPY04_13320 PF16124 RecQ zinc-binding HPY04_13325 PF00892 EamA-like transporter family HPY04_13335 PF12833 Helix-turn-helix domain HPY04_13340 PF01810 LysE type translocator HPY04_13345 PF01609 Transposase DDE domain HPY04_13345 PF02281 Transposase Tn5 dimerisation domain HPY04_13345 PF14706 Transposase DNA-binding HPY04_13350 PF00580 UvrD/REP helicase N-terminal domain HPY04_13350 PF13361 UvrD-like helicase C-terminal domain HPY04_13355 PF01432 Peptidase family M3 HPY04_13360 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HPY04_13365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY04_13365 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY04_13375 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_13375 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY04_13385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY04_13390 PF00005 ABC transporter HPY04_13390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY04_13425 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY04_13430 PF00580 UvrD/REP helicase N-terminal domain HPY04_13430 PF13361 UvrD-like helicase C-terminal domain HPY04_13435 PF00440 Bacterial regulatory proteins, tetR family HPY04_13440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY04_13445 PF00873 AcrB/AcrD/AcrF family HPY04_13450 PF04380 Membrane fusogenic activity HPY04_13455 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HPY04_13455 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HPY04_13460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_13460 PF03466 LysR substrate binding domain HPY04_13530 PF12724 Flavodoxin domain HPY04_13535 PF02386 Cation transport protein HPY04_13540 PF09186 Domain of unknown function (DUF1949) HPY04_13540 PF01205 Uncharacterized protein family UPF0029 HPY04_13545 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY04_13545 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY04_13545 PF00378 Enoyl-CoA hydratase/isomerase HPY04_13550 PF02803 Thiolase, C-terminal domain HPY04_13550 PF00108 Thiolase, N-terminal domain HPY04_13555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_13555 PF03466 LysR substrate binding domain HPY04_13560 PF07690 Major Facilitator Superfamily HPY04_13565 PF00132 Bacterial transferase hexapeptide (six repeats) HPY04_13565 PF12804 MobA-like NTP transferase domain HPY04_13570 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HPY04_13570 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HPY04_13575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY04_13575 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY04_13580 PF00231 ATP synthase HPY04_13585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY04_13585 PF00306 ATP synthase alpha/beta chain, C terminal domain HPY04_13585 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY04_13590 PF00213 ATP synthase delta (OSCP) subunit HPY04_13595 PF00430 ATP synthase B/B' CF(0) HPY04_13600 PF00137 ATP synthase subunit C HPY04_13605 PF00119 ATP synthase A chain HPY04_13610 PF03899 ATP synthase I chain HPY04_13615 PF02195 ParB-like nuclease domain HPY04_13615 PF17762 HTH domain found in ParB protein HPY04_13620 PF13614 AAA domain HPY04_13625 PF02527 rRNA small subunit methyltransferase G HPY04_13630 PF13932 GidA associated domain HPY04_13630 PF01134 Glucose inhibited division protein A HPY04_13635 PF00258 Flavodoxin HPY04_13640 PF10396 GTP-binding protein TrmE N-terminus HPY04_13640 PF01926 50S ribosome-binding GTPase HPY04_13640 PF12631 MnmE helical domain HPY04_13645 PF02096 60Kd inner membrane protein HPY04_13645 PF14849 YidC periplasmic domain HPY04_13650 PF01809 Putative membrane protein insertion efficiency factor HPY04_13655 PF00825 Ribonuclease P HPY04_13660 PF00468 Ribosomal protein L34 HPY04_13665 PF00005 ABC transporter HPY04_13670 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_13675 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY04_13680 PF02195 ParB-like nuclease domain HPY04_13680 PF08775 ParB family HPY04_13685 PF18607 ParA helix turn helix domain HPY04_13685 PF13614 AAA domain HPY04_13710 PF01709 Transcriptional regulator HPY04_13715 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HPY04_13715 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY04_13720 PF00672 HAMP domain HPY04_13720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_13720 PF17200 Single Cache domain 2 HPY04_13725 PF10928 Protein of unknown function (DUF2810) HPY04_13730 PF17874 MalT-like TPR region HPY04_13730 PF00196 Bacterial regulatory proteins, luxR family HPY04_13735 PF00343 Carbohydrate phosphorylase HPY04_13740 PF02446 4-alpha-glucanotransferase HPY04_13745 PF00128 Alpha amylase, catalytic domain HPY04_13745 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY04_13745 PF02806 Alpha amylase, C-terminal all-beta domain HPY04_13750 PF05638 Type VI secretion system effector, Hcp HPY04_13755 PF04717 Type VI secretion system, phage-baseplate injector HPY04_13755 PF16671 Actin cross-linking domain HPY04_13780 PF01757 Acyltransferase family HPY04_13780 PF00842 Alanine racemase, C-terminal domain HPY04_13780 PF01168 Alanine racemase, N-terminal domain HPY04_13790 PF00939 Sodium:sulfate symporter transmembrane region HPY04_13795 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY04_13800 PF00704 Glycosyl hydrolases family 18 HPY04_13800 PF08329 Chitinase A, N-terminal domain HPY04_13815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_13815 PF00672 HAMP domain HPY04_13815 PF02743 Cache domain HPY04_13835 PF01569 PAP2 superfamily HPY04_13840 PF00375 Sodium:dicarboxylate symporter family HPY04_13850 PF02630 SCO1/SenC HPY04_13865 PF03616 Sodium/glutamate symporter HPY04_13870 PF12945 Flagellar protein YcgR HPY04_13870 PF07238 PilZ domain HPY04_13885 PF00990 Diguanylate cyclase, GGDEF domain HPY04_13900 PF01048 Phosphorylase superfamily HPY04_13905 PF08349 Protein of unknown function (DUF1722) HPY04_13910 PF13411 MerR HTH family regulatory protein HPY04_13915 PF03441 FAD binding domain of DNA photolyase HPY04_13915 PF00875 DNA photolyase HPY04_13920 PF17969 L,D-transpeptidase C-terminal domain HPY04_13920 PF03734 L,D-transpeptidase catalytic domain HPY04_13920 PF01476 LysM domain HPY04_13930 PF00271 Helicase conserved C-terminal domain HPY04_13930 PF00270 DEAD/DEAH box helicase HPY04_13935 PF00326 Prolyl oligopeptidase family HPY04_13935 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HPY04_13940 PF00593 TonB dependent receptor HPY04_13940 PF07715 TonB-dependent Receptor Plug Domain HPY04_13960 PF00672 HAMP domain HPY04_13960 PF12729 Four helix bundle sensory module for signal transduction HPY04_13960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_13965 PF12849 PBP superfamily domain HPY04_13970 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_13975 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_13980 PF00005 ABC transporter HPY04_13985 PF00990 Diguanylate cyclase, GGDEF domain HPY04_13985 PF03707 Bacterial signalling protein N terminal repeat HPY04_13985 PF00563 EAL domain HPY04_14005 PF01740 STAS domain HPY04_14005 PF00916 Sulfate permease family HPY04_14015 PF08525 Opacity-associated protein A N-terminal motif HPY04_14015 PF01551 Peptidase family M23 HPY04_14015 PF01476 LysM domain HPY04_14020 PF00990 Diguanylate cyclase, GGDEF domain HPY04_14020 PF03707 Bacterial signalling protein N terminal repeat HPY04_14020 PF00563 EAL domain HPY04_14020 PF13188 PAS domain HPY04_14025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_14025 PF03466 LysR substrate binding domain HPY04_14030 PF07690 Major Facilitator Superfamily HPY04_14035 PF09278 MerR, DNA binding HPY04_14035 PF00376 MerR family regulatory protein HPY04_14050 PF00375 Sodium:dicarboxylate symporter family HPY04_14060 PF02001 Protein of unknown function DUF134 HPY04_14080 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY04_14080 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY04_14080 PF01483 Proprotein convertase P-domain HPY04_14080 PF01447 Thermolysin metallopeptidase, catalytic domain HPY04_14090 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HPY04_14090 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HPY04_14095 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HPY04_14095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY04_14100 PF00581 Rhodanese-like domain HPY04_14105 PF00196 Bacterial regulatory proteins, luxR family HPY04_14105 PF00563 EAL domain HPY04_14110 PF13419 Haloacid dehalogenase-like hydrolase HPY04_14115 PF01740 STAS domain HPY04_14115 PF00916 Sulfate permease family HPY04_14120 PF00849 RNA pseudouridylate synthase HPY04_14180 PF00004 ATPase family associated with various cellular activities (AAA) HPY04_14180 PF17871 AAA lid domain HPY04_14180 PF10431 C-terminal, D2-small domain, of ClpB protein HPY04_14180 PF07724 AAA domain (Cdc48 subfamily) HPY04_14210 PF16671 Actin cross-linking domain HPY04_14210 PF04717 Type VI secretion system, phage-baseplate injector HPY04_14225 PF05025 RbsD / FucU transport protein family HPY04_14230 PF00005 ABC transporter HPY04_14235 PF02653 Branched-chain amino acid transport system / permease component HPY04_14240 PF13407 Periplasmic binding protein domain HPY04_14245 PF00294 pfkB family carbohydrate kinase HPY04_14250 PF00356 Bacterial regulatory proteins, lacI family HPY04_14255 PF04973 Nicotinamide mononucleotide transporter HPY04_14260 PF01048 Phosphorylase superfamily HPY04_14270 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY04_14275 PF07690 Major Facilitator Superfamily HPY04_14290 PF02743 Cache domain HPY04_14290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_14290 PF00512 His Kinase A (phospho-acceptor) domain HPY04_14295 PF00158 Sigma-54 interaction domain HPY04_14295 PF00072 Response regulator receiver domain HPY04_14295 PF02954 Bacterial regulatory protein, Fis family HPY04_14310 PF01266 FAD dependent oxidoreductase HPY04_14315 PF12561 ToxR activated gene A lipoprotein domain HPY04_14315 PF00041 Fibronectin type III domain HPY04_14320 PF01327 Polypeptide deformylase HPY04_14330 PF03334 Na+/H+ antiporter subunit HPY04_14335 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) HPY04_14355 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY04_14355 PF00361 Proton-conducting membrane transporter HPY04_14355 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter HPY04_14355 PF13244 Domain of unknown function (DUF4040) HPY04_14365 PF00582 Universal stress protein family HPY04_14370 PF03222 Tryptophan/tyrosine permease family HPY04_14375 PF01212 Beta-eliminating lyase HPY04_14385 PF12843 Putative quorum-sensing-regulated virulence factor HPY04_14395 PF08448 PAS fold HPY04_14395 PF00990 Diguanylate cyclase, GGDEF domain HPY04_14395 PF00563 EAL domain HPY04_14400 PF00313 'Cold-shock' DNA-binding domain HPY04_14415 PF07584 Aerotolerance regulator N-terminal HPY04_14415 PF13519 von Willebrand factor type A domain HPY04_14430 PF01882 Protein of unknown function DUF58 HPY04_14435 PF07726 ATPase family associated with various cellular activities (AAA) HPY04_14435 PF17863 AAA lid domain HPY04_14440 PF02743 Cache domain HPY04_14440 PF00672 HAMP domain HPY04_14440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_14455 PF07662 Na+ dependent nucleoside transporter C-terminus HPY04_14455 PF01773 Na+ dependent nucleoside transporter N-terminus HPY04_14455 PF07670 Nucleoside recognition HPY04_14460 PF01546 Peptidase family M20/M25/M40 HPY04_14460 PF07687 Peptidase dimerisation domain HPY04_14470 PF00158 Sigma-54 interaction domain HPY04_14470 PF01590 GAF domain HPY04_14475 PF00042 Globin HPY04_14475 PF00970 Oxidoreductase FAD-binding domain HPY04_14475 PF00175 Oxidoreductase NAD-binding domain HPY04_14480 PF00313 'Cold-shock' DNA-binding domain HPY04_14485 PF03889 Alternative ribosome-rescue factor A HPY04_14500 PF00072 Response regulator receiver domain HPY04_14510 PF01256 Carbohydrate kinase HPY04_14510 PF03853 YjeF-related protein N-terminus HPY04_14515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY04_14515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY04_14525 PF07885 Ion channel HPY04_14535 PF00478 IMP dehydrogenase / GMP reductase domain HPY04_14545 PF00589 Phage integrase family HPY04_14545 PF02899 Phage integrase, N-terminal SAM-like domain HPY04_14550 PF00004 ATPase family associated with various cellular activities (AAA) HPY04_14600 PF05840 Bacteriophage replication gene A protein (GPA) HPY04_14755 PF02583 Metal-sensitive transcriptional repressor HPY04_14765 PF13493 Domain of unknown function (DUF4118) HPY04_14765 PF02702 Osmosensitive K+ channel His kinase sensor domain HPY04_14765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_14765 PF00512 His Kinase A (phospho-acceptor) domain HPY04_14770 PF00072 Response regulator receiver domain HPY04_14770 PF00486 Transcriptional regulatory protein, C terminal HPY04_14780 PF02080 TrkA-C domain HPY04_14780 PF02254 TrkA-N domain HPY04_14810 PF00270 DEAD/DEAH box helicase HPY04_14810 PF00271 Helicase conserved C-terminal domain HPY04_14815 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY04_14820 PF02540 NAD synthase HPY04_14825 PF01467 Cytidylyltransferase-like HPY04_14830 PF11849 Domain of unknown function (DUF3369) HPY04_14835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_14835 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY04_14835 PF00512 His Kinase A (phospho-acceptor) domain HPY04_14845 PF03553 Na+/H+ antiporter family HPY04_14850 PF07690 Major Facilitator Superfamily HPY04_14865 PF00657 GDSL-like Lipase/Acylhydrolase HPY04_14870 PF12563 Hemolytic toxin N terminal HPY04_14870 PF16458 Beta-prism lectin HPY04_14870 PF07968 Leukocidin/Hemolysin toxin family HPY04_14875 PF12729 Four helix bundle sensory module for signal transduction HPY04_14875 PF00672 HAMP domain HPY04_14875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_14880 PF00561 alpha/beta hydrolase fold HPY04_14885 PF03280 Proteobacterial lipase chaperone protein HPY04_14890 PF00801 PKD domain HPY04_14890 PF05547 Immune inhibitor A peptidase M6 HPY04_14910 PF01032 FecCD transport family HPY04_14915 PF01032 FecCD transport family HPY04_14920 PF00005 ABC transporter HPY04_14925 PF12833 Helix-turn-helix domain HPY04_14930 PF00593 TonB dependent receptor HPY04_14930 PF07715 TonB-dependent Receptor Plug Domain HPY04_14940 PF00871 Acetokinase family HPY04_14955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_14955 PF00672 HAMP domain HPY04_14955 PF00512 His Kinase A (phospho-acceptor) domain HPY04_14960 PF00486 Transcriptional regulatory protein, C terminal HPY04_14960 PF00072 Response regulator receiver domain HPY04_14970 PF01261 Xylose isomerase-like TIM barrel HPY04_14975 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY04_14985 PF00596 Class II Aldolase and Adducin N-terminal domain HPY04_14990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY04_14995 PF03611 PTS system sugar-specific permease component HPY04_15000 PF00455 DeoR C terminal sensor domain HPY04_15000 PF08220 DeoR-like helix-turn-helix domain HPY04_15015 PF00132 Bacterial transferase hexapeptide (six repeats) HPY04_15030 PF00486 Transcriptional regulatory protein, C terminal HPY04_15030 PF00072 Response regulator receiver domain HPY04_15035 PF00512 His Kinase A (phospho-acceptor) domain HPY04_15035 PF13426 PAS domain HPY04_15035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_15035 PF00672 HAMP domain HPY04_15035 PF14827 Double sensory domain of two-component sensor kinase HPY04_15045 PF00672 HAMP domain HPY04_15045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_15045 PF02743 Cache domain HPY04_15050 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY04_15055 PF00768 D-alanyl-D-alanine carboxypeptidase HPY04_15055 PF07943 Penicillin-binding protein 5, C-terminal domain HPY04_15070 PF00194 Eukaryotic-type carbonic anhydrase HPY04_15075 PF02347 Glycine cleavage system P-protein HPY04_15080 PF01597 Glycine cleavage H-protein HPY04_15085 PF00464 Serine hydroxymethyltransferase HPY04_15095 PF01571 Aminomethyltransferase folate-binding domain HPY04_15095 PF08669 Glycine cleavage T-protein C-terminal barrel domain HPY04_15100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY04_15100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY04_15100 PF02824 TGS domain HPY04_15100 PF03129 Anticodon binding domain HPY04_15105 PF05198 Translation initiation factor IF-3, N-terminal domain HPY04_15105 PF00707 Translation initiation factor IF-3, C-terminal domain HPY04_15110 PF01632 Ribosomal protein L35 HPY04_15115 PF00453 Ribosomal protein L20 HPY04_15120 PF13495 Phage integrase, N-terminal SAM-like domain HPY04_15120 PF00589 Phage integrase family HPY04_15125 PF08212 Lipocalin-like domain HPY04_15160 PF13302 Acetyltransferase (GNAT) domain HPY04_15185 PF08212 Lipocalin-like domain HPY04_15225 PF00583 Acetyltransferase (GNAT) family HPY04_15300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY04_15525 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HPY04_15575 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HPY04_15580 PF01636 Phosphotransferase enzyme family HPY04_15585 PF13302 Acetyltransferase (GNAT) domain HPY04_15620 PF00132 Bacterial transferase hexapeptide (six repeats) HPY04_15640 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB HPY04_15645 PF01381 Helix-turn-helix HPY04_15730 PF12464 Maltose acetyltransferase HPY04_15730 PF14602 Hexapeptide repeat of succinyl-transferase HPY04_15740 PF00561 alpha/beta hydrolase fold HPY04_15780 PF13302 Acetyltransferase (GNAT) domain HPY04_15830 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HPY04_15840 PF01966 HD domain HPY04_15850 PF09722 Protein of unknown function (DUF2384) HPY04_15860 PF02016 LD-carboxypeptidase N-terminal domain HPY04_15860 PF17676 LD-carboxypeptidase C-terminal domain HPY04_15870 PF13597 Anaerobic ribonucleoside-triphosphate reductase HPY04_15870 PF03477 ATP cone domain HPY04_15880 PF00155 Aminotransferase class I and II HPY04_15885 PF08443 RimK-like ATP-grasp domain HPY04_15885 PF18030 RimK PreATP-grasp domain HPY04_15890 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY04_15890 PF02378 Phosphotransferase system, EIIC HPY04_15895 PF00294 pfkB family carbohydrate kinase HPY04_15900 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY04_15900 PF00381 PTS HPr component phosphorylation site HPY04_15905 PF00356 Bacterial regulatory proteins, lacI family HPY04_15905 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY04_15910 PF12320 Type 5 capsule protein repressor C-terminal domain HPY04_15910 PF00149 Calcineurin-like phosphoesterase HPY04_15915 PF13476 AAA domain HPY04_15920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_15920 PF00072 Response regulator receiver domain HPY04_15925 PF00155 Aminotransferase class I and II HPY04_15935 PF00654 Voltage gated chloride channel HPY04_15940 PF02492 CobW/HypB/UreG, nucleotide-binding domain HPY04_15940 PF07683 Cobalamin synthesis protein cobW C-terminal domain HPY04_15945 PF01926 50S ribosome-binding GTPase HPY04_15950 PF02705 K+ potassium transporter HPY04_15955 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HPY04_15955 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HPY04_15955 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HPY04_15955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY04_15955 PF10371 Domain of unknown function HPY04_15960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_15960 PF00512 His Kinase A (phospho-acceptor) domain HPY04_15960 PF02702 Osmosensitive K+ channel His kinase sensor domain HPY04_15960 PF13493 Domain of unknown function (DUF4118) HPY04_15965 PF00072 Response regulator receiver domain HPY04_15965 PF00486 Transcriptional regulatory protein, C terminal HPY04_15970 PF02416 mttA/Hcf106 family HPY04_15975 PF09335 SNARE associated Golgi protein HPY04_15985 PF00563 EAL domain HPY04_15985 PF10388 EAL-domain associated signalling protein domain HPY04_15995 PF01292 Prokaryotic cytochrome b561 HPY04_16000 PF04264 YceI-like domain HPY04_16005 PF01226 Formate/nitrite transporter HPY04_16010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_16010 PF03466 LysR substrate binding domain HPY04_16015 PF06496 Protein of unknown function (DUF1097) HPY04_16020 PF11398 Protein of unknown function (DUF2813) HPY04_16025 PF02872 5'-nucleotidase, C-terminal domain HPY04_16025 PF00149 Calcineurin-like phosphoesterase HPY04_16030 PF03741 Integral membrane protein TerC family HPY04_16040 PF08274 PhnA Zinc-Ribbon HPY04_16040 PF03831 PhnA domain HPY04_16070 PF17151 Periplasmic sensor domain HPY04_16070 PF00990 Diguanylate cyclase, GGDEF domain HPY04_16090 PF00990 Diguanylate cyclase, GGDEF domain HPY04_16090 PF17158 Membrane-associated sensor, integral membrane domain HPY04_16105 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HPY04_16105 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY04_16105 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY04_16110 PF02233 NAD(P) transhydrogenase beta subunit HPY04_16120 PF00486 Transcriptional regulatory protein, C terminal HPY04_16120 PF00072 Response regulator receiver domain HPY04_16135 PF03701 Uncharacterised protein family (UPF0181) HPY04_16205 PF01253 Translation initiation factor SUI1 HPY04_16215 PF07478 D-ala D-ala ligase C-terminus HPY04_16215 PF01820 D-ala D-ala ligase N-terminus HPY04_16225 PF13607 Succinyl-CoA ligase like flavodoxin domain HPY04_16225 PF13380 CoA binding domain HPY04_16225 PF00583 Acetyltransferase (GNAT) family HPY04_16230 PF03466 LysR substrate binding domain HPY04_16230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_16235 PF00593 TonB dependent receptor HPY04_16235 PF07715 TonB-dependent Receptor Plug Domain HPY04_16240 PF12793 Sugar transport-related sRNA regulator N-term HPY04_16240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY04_16250 PF03061 Thioesterase superfamily HPY04_16270 PF00043 Glutathione S-transferase, C-terminal domain HPY04_16270 PF02798 Glutathione S-transferase, N-terminal domain HPY04_16285 PF03479 Plants and Prokaryotes Conserved (PCC) domain HPY04_16285 PF00132 Bacterial transferase hexapeptide (six repeats) HPY04_16285 PF12804 MobA-like NTP transferase domain HPY04_16290 PF00005 ABC transporter HPY04_16290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY04_16295 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY04_16295 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_16305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY04_16335 PF07702 UTRA domain HPY04_16335 PF00392 Bacterial regulatory proteins, gntR family HPY04_16340 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_16345 PF00005 ABC transporter HPY04_16355 PF00266 Aminotransferase class-V HPY04_16365 PF13419 Haloacid dehalogenase-like hydrolase HPY04_16370 PF14760 Rnk N-terminus HPY04_16370 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY04_16375 PF00128 Alpha amylase, catalytic domain HPY04_16375 PF00686 Starch binding domain HPY04_16380 PF03459 TOBE domain HPY04_16380 PF17912 MalK OB fold domain HPY04_16380 PF00005 ABC transporter HPY04_16390 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HPY04_16390 PF00132 Bacterial transferase hexapeptide (six repeats) HPY04_16405 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_16410 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_16415 PF16657 Maltogenic Amylase, C-terminal domain HPY04_16415 PF02903 Alpha amylase, N-terminal ig-like domain HPY04_16415 PF00128 Alpha amylase, catalytic domain HPY04_16430 PF13419 Haloacid dehalogenase-like hydrolase HPY04_16435 PF03466 LysR substrate binding domain HPY04_16435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_16450 PF01741 Large-conductance mechanosensitive channel, MscL HPY04_16455 PF01268 Formate--tetrahydrofolate ligase HPY04_16460 PF01625 Peptide methionine sulfoxide reductase HPY04_16460 PF01641 SelR domain HPY04_16465 PF01227 GTP cyclohydrolase I HPY04_16470 PF00994 Probable molybdopterin binding domain HPY04_16470 PF03454 MoeA C-terminal region (domain IV) HPY04_16470 PF03453 MoeA N-terminal region (domain I and II) HPY04_16475 PF00899 ThiF family HPY04_16485 PF00581 Rhodanese-like domain HPY04_16490 PF04198 Putative sugar-binding domain HPY04_16495 PF00923 Transaldolase/Fructose-6-phosphate aldolase HPY04_16500 PF00456 Transketolase, thiamine diphosphate binding domain HPY04_16500 PF02780 Transketolase, C-terminal domain HPY04_16500 PF02779 Transketolase, pyrimidine binding domain HPY04_16515 PF14706 Transposase DNA-binding HPY04_16515 PF02281 Transposase Tn5 dimerisation domain HPY04_16515 PF01609 Transposase DDE domain HPY04_16530 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY04_16530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY04_16540 PF00293 NUDIX domain HPY04_16545 PF06942 GlpM protein HPY04_16555 PF03466 LysR substrate binding domain HPY04_16555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_16560 PF03992 Antibiotic biosynthesis monooxygenase HPY04_16565 PF00881 Nitroreductase family HPY04_16570 PF00873 AcrB/AcrD/AcrF family HPY04_16585 PF04143 Sulphur transport HPY04_16600 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY04_16600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY04_16645 PF07715 TonB-dependent Receptor Plug Domain HPY04_16645 PF00593 TonB dependent receptor HPY04_16650 PF00072 Response regulator receiver domain HPY04_16650 PF00486 Transcriptional regulatory protein, C terminal HPY04_16660 PF00367 phosphotransferase system, EIIB HPY04_16660 PF02378 Phosphotransferase system, EIIC HPY04_16670 PF08244 Glycosyl hydrolases family 32 C terminal HPY04_16670 PF00251 Glycosyl hydrolases family 32 N-terminal domain HPY04_16675 PF00294 pfkB family carbohydrate kinase HPY04_16680 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HPY04_16680 PF01266 FAD dependent oxidoreductase HPY04_16685 PF00672 HAMP domain HPY04_16685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_16690 PF13488 Glycine zipper HPY04_16690 PF00691 OmpA family HPY04_16695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY04_16695 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY04_16700 PF13419 Haloacid dehalogenase-like hydrolase HPY04_16705 PF12729 Four helix bundle sensory module for signal transduction HPY04_16705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_16705 PF00672 HAMP domain HPY04_16710 PF03606 C4-dicarboxylate anaerobic carrier HPY04_16715 PF03315 Serine dehydratase beta chain HPY04_16715 PF03313 Serine dehydratase alpha chain HPY04_16720 PF00196 Bacterial regulatory proteins, luxR family HPY04_16720 PF00072 Response regulator receiver domain HPY04_16725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_16725 PF00672 HAMP domain HPY04_16725 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HPY04_16725 PF07730 Histidine kinase HPY04_16730 PF13187 4Fe-4S dicluster domain HPY04_16730 PF12838 4Fe-4S dicluster domain HPY04_16740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY04_16740 PF01568 Molydopterin dinucleotide binding domain HPY04_16740 PF00384 Molybdopterin oxidoreductase HPY04_16745 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HPY04_16750 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY04_16760 PF01966 HD domain HPY04_16765 PF00196 Bacterial regulatory proteins, luxR family HPY04_16765 PF00072 Response regulator receiver domain HPY04_16770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_16770 PF07730 Histidine kinase HPY04_16770 PF05231 MASE1 HPY04_16775 PF07690 Major Facilitator Superfamily HPY04_16785 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_16790 PF08402 TOBE domain HPY04_16790 PF00005 ABC transporter HPY04_16795 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HPY04_16805 PF00108 Thiolase, N-terminal domain HPY04_16805 PF02803 Thiolase, C-terminal domain HPY04_16810 PF00106 short chain dehydrogenase HPY04_16815 PF07549 SecD/SecF GG Motif HPY04_16815 PF02355 Protein export membrane protein HPY04_16820 PF02355 Protein export membrane protein HPY04_16820 PF13721 SecD export protein N-terminal TM region HPY04_16820 PF07549 SecD/SecF GG Motif HPY04_16835 PF00990 Diguanylate cyclase, GGDEF domain HPY04_16835 PF17158 Membrane-associated sensor, integral membrane domain HPY04_16840 PF00483 Nucleotidyl transferase HPY04_16845 PF06483 Chitinase C HPY04_16845 PF00704 Glycosyl hydrolases family 18 HPY04_16850 PF00465 Iron-containing alcohol dehydrogenase HPY04_16860 PF14532 Sigma-54 interaction domain HPY04_16860 PF00072 Response regulator receiver domain HPY04_16860 PF02954 Bacterial regulatory protein, Fis family HPY04_16865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_16865 PF02743 Cache domain HPY04_16865 PF00512 His Kinase A (phospho-acceptor) domain HPY04_16875 PF07690 Major Facilitator Superfamily HPY04_16880 PF02887 Pyruvate kinase, alpha/beta domain HPY04_16880 PF00224 Pyruvate kinase, barrel domain HPY04_16885 PF17149 Periplasmic sensor domain found in signal transduction proteins HPY04_16885 PF00672 HAMP domain HPY04_16885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_16885 PF00512 His Kinase A (phospho-acceptor) domain HPY04_16885 PF01627 Hpt domain HPY04_16885 PF00072 Response regulator receiver domain HPY04_16890 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY04_16895 PF02142 MGS-like domain HPY04_16900 PF00857 Isochorismatase family HPY04_16905 PF01219 Prokaryotic diacylglycerol kinase HPY04_16910 PF00580 UvrD/REP helicase N-terminal domain HPY04_16910 PF13361 UvrD-like helicase C-terminal domain HPY04_16910 PF12462 DNA helicase IV / RNA helicase N terminal HPY04_16915 PF12805 FUSC-like inner membrane protein yccS HPY04_16920 PF00072 Response regulator receiver domain HPY04_16920 PF13188 PAS domain HPY04_16920 PF08448 PAS fold HPY04_16920 PF00512 His Kinase A (phospho-acceptor) domain HPY04_16920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_16945 PF00005 ABC transporter HPY04_16945 PF03459 TOBE domain HPY04_16950 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_16960 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY04_16960 PF07685 CobB/CobQ-like glutamine amidotransferase domain HPY04_16995 PF00072 Response regulator receiver domain HPY04_16995 PF09308 LuxQ, periplasmic HPY04_16995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_16995 PF00512 His Kinase A (phospho-acceptor) domain HPY04_17000 PF13407 Periplasmic binding protein domain HPY04_17010 PF01541 GIY-YIG catalytic domain HPY04_17015 PF04337 Protein of unknown function, DUF480 HPY04_17025 PF04363 Protein of unknown function (DUF496) HPY04_17035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HPY04_17035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HPY04_17040 PF00230 Major intrinsic protein HPY04_17045 PF04324 BFD-like [2Fe-2S] binding domain HPY04_17045 PF01266 FAD dependent oxidoreductase HPY04_17050 PF00890 FAD binding domain HPY04_17055 PF02754 Cysteine-rich domain HPY04_17055 PF13183 4Fe-4S dicluster domain HPY04_17060 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY04_17060 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY04_17065 PF00085 Thioredoxin HPY04_17070 PF07690 Major Facilitator Superfamily HPY04_17095 PF03466 LysR substrate binding domain HPY04_17095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_17100 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_17105 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_17110 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY04_17115 PF00005 ABC transporter HPY04_17125 PF05762 VWA domain containing CoxE-like protein HPY04_17130 PF12592 Protein of unknown function (DUF3763) HPY04_17130 PF17868 AAA lid domain HPY04_17130 PF07728 AAA domain (dynein-related subfamily) HPY04_17135 PF00293 NUDIX domain HPY04_17140 PF01212 Beta-eliminating lyase HPY04_17145 PF00034 Cytochrome c HPY04_17150 PF00440 Bacterial regulatory proteins, tetR family HPY04_17150 PF08361 MAATS-type transcriptional repressor, C-terminal region HPY04_17155 PF00271 Helicase conserved C-terminal domain HPY04_17155 PF00270 DEAD/DEAH box helicase HPY04_17160 PF04336 Acyl carrier protein phosphodiesterase HPY04_17165 PF03222 Tryptophan/tyrosine permease family HPY04_17170 PF00672 HAMP domain HPY04_17170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_17170 PF12729 Four helix bundle sensory module for signal transduction HPY04_17175 PF16363 GDP-mannose 4,6 dehydratase HPY04_17180 PF03746 LamB/YcsF family HPY04_17185 PF02682 Carboxyltransferase domain, subdomain C and D HPY04_17190 PF02626 Carboxyltransferase domain, subdomain A and B HPY04_17200 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY04_17200 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY04_17210 PF00005 ABC transporter HPY04_17215 PF13472 GDSL-like Lipase/Acylhydrolase family HPY04_17220 PF07055 Enoyl reductase FAD binding domain HPY04_17220 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY04_17220 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY04_17225 PF00990 Diguanylate cyclase, GGDEF domain HPY04_17225 PF00498 FHA domain HPY04_17225 PF00563 EAL domain HPY04_17235 PF00684 DnaJ central domain HPY04_17235 PF01556 DnaJ C terminal domain HPY04_17235 PF00226 DnaJ domain HPY04_17250 PF13419 Haloacid dehalogenase-like hydrolase HPY04_17265 PF00294 pfkB family carbohydrate kinase HPY04_17270 PF00884 Sulfatase HPY04_17280 PF00271 Helicase conserved C-terminal domain HPY04_17280 PF00270 DEAD/DEAH box helicase HPY04_17280 PF03880 DbpA RNA binding domain HPY04_17285 PF00773 RNB domain HPY04_17285 PF00575 S1 RNA binding domain HPY04_17285 PF08206 Ribonuclease B OB domain HPY04_17295 PF12849 PBP superfamily domain HPY04_17300 PF01575 MaoC like domain HPY04_17305 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HPY04_17310 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HPY04_17310 PF18416 N-acetylglucosamine binding protein domain 2 HPY04_17315 PF01447 Thermolysin metallopeptidase, catalytic domain HPY04_17315 PF03413 Peptidase propeptide and YPEB domain HPY04_17315 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY04_17315 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY04_17315 PF04151 Bacterial pre-peptidase C-terminal domain HPY04_17320 PF04151 Bacterial pre-peptidase C-terminal domain HPY04_17320 PF04389 Peptidase family M28 HPY04_17325 PF00491 Arginase family HPY04_17330 PF17810 Arginine decarboxylase helical bundle domain HPY04_17330 PF17944 Arginine decarboxylase C-terminal helical extension HPY04_17330 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY04_17340 PF03448 MgtE intracellular N domain HPY04_17340 PF00571 CBS domain HPY04_17340 PF01769 Divalent cation transporter HPY04_17345 PF00166 Chaperonin 10 Kd subunit HPY04_17350 PF00118 TCP-1/cpn60 chaperonin family HPY04_17360 PF00696 Amino acid kinase family HPY04_17360 PF13840 ACT domain HPY04_17365 PF06339 Ectoine synthase HPY04_17370 PF00202 Aminotransferase class-III HPY04_17375 PF00583 Acetyltransferase (GNAT) family HPY04_17380 PF01329 Pterin 4 alpha carbinolamine dehydratase HPY04_17385 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HPY04_17390 PF00501 AMP-binding enzyme HPY04_17390 PF13193 AMP-binding enzyme C-terminal domain HPY04_17410 PF03466 LysR substrate binding domain HPY04_17410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_17420 PF00892 EamA-like transporter family HPY04_17425 PF00132 Bacterial transferase hexapeptide (six repeats) HPY04_17425 PF14602 Hexapeptide repeat of succinyl-transferase HPY04_17425 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal HPY04_17430 PF00571 CBS domain HPY04_17430 PF03471 Transporter associated domain HPY04_17430 PF01595 Cyclin M transmembrane N-terminal domain HPY04_17435 PF02566 OsmC-like protein HPY04_17440 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY04_17450 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY04_17450 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY04_17470 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY04_17475 PF13520 Amino acid permease HPY04_17480 PF00990 Diguanylate cyclase, GGDEF domain HPY04_17490 PF00072 Response regulator receiver domain HPY04_17490 PF04397 LytTr DNA-binding domain HPY04_17495 PF13492 GAF domain HPY04_17495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_17495 PF06580 Histidine kinase HPY04_17495 PF07694 5TMR of 5TMR-LYT HPY04_17515 PF00005 ABC transporter HPY04_17525 PF00248 Aldo/keto reductase family HPY04_17530 PF00128 Alpha amylase, catalytic domain HPY04_17540 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY04_17545 PF12262 Bacterial virulence factor lipase N-terminal HPY04_17550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_17550 PF08447 PAS fold HPY04_17550 PF13426 PAS domain HPY04_17555 PF01447 Thermolysin metallopeptidase, catalytic domain HPY04_17555 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY04_17555 PF04151 Bacterial pre-peptidase C-terminal domain HPY04_17555 PF03413 Peptidase propeptide and YPEB domain HPY04_17555 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY04_17565 PF03922 OmpW family HPY04_17575 PF00768 D-alanyl-D-alanine carboxypeptidase HPY04_17580 PF17876 Cold shock domain HPY04_17580 PF00575 S1 RNA binding domain HPY04_17580 PF00773 RNB domain HPY04_17580 PF08206 Ribonuclease B OB domain HPY04_17580 PF08461 Ribonuclease R winged-helix domain HPY04_17585 PF00313 'Cold-shock' DNA-binding domain HPY04_17595 PF00291 Pyridoxal-phosphate dependent enzyme HPY04_17600 PF03466 LysR substrate binding domain HPY04_17600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_17615 PF03193 RsgA GTPase HPY04_17630 PF08240 Alcohol dehydrogenase GroES-like domain HPY04_17630 PF00107 Zinc-binding dehydrogenase HPY04_17650 PF13402 Peptidase M60, enhancin and enhancin-like HPY04_17650 PF18650 Immunomodulating metalloprotease N-terminal domain HPY04_17650 PF18642 Immunomodulating metalloprotease helical domain HPY04_17655 PF00313 'Cold-shock' DNA-binding domain HPY04_17660 PF08206 Ribonuclease B OB domain HPY04_17660 PF08461 Ribonuclease R winged-helix domain HPY04_17660 PF17876 Cold shock domain HPY04_17660 PF00773 RNB domain HPY04_17660 PF00575 S1 RNA binding domain HPY04_17775 PF13289 SIR2-like domain HPY04_17780 PF13438 Domain of unknown function (DUF4113) HPY04_17780 PF11799 impB/mucB/samB family C-terminal domain HPY04_17780 PF11798 IMS family HHH motif HPY04_17780 PF00817 impB/mucB/samB family HPY04_17785 PF00717 Peptidase S24-like HPY04_17795 PF06965 Na+/H+ antiporter 1 HPY04_17805 PF00313 'Cold-shock' DNA-binding domain HPY04_17830 PF03354 Phage Terminase HPY04_17840 PF00717 Peptidase S24-like HPY04_17840 PF01381 Helix-turn-helix HPY04_17855 PF00589 Phage integrase family HPY04_17855 PF12167 Arm DNA-binding domain HPY04_17880 PF00107 Zinc-binding dehydrogenase HPY04_17880 PF08240 Alcohol dehydrogenase GroES-like domain HPY04_17885 PF00155 Aminotransferase class I and II HPY04_17890 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY04_17895 PF03466 LysR substrate binding domain HPY04_17895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_17900 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY04_17925 PF01966 HD domain HPY04_17930 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HPY04_17930 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HPY04_17935 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HPY04_17940 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY04_17940 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HPY04_17965 PF02595 Glycerate kinase family HPY04_17970 PF02447 GntP family permease HPY04_17975 PF17853 GGDEF-like domain HPY04_17975 PF05651 Putative sugar diacid recognition HPY04_17975 PF13556 PucR C-terminal helix-turn-helix domain HPY04_17980 PF00672 HAMP domain HPY04_17980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_17985 PF01243 Pyridoxamine 5'-phosphate oxidase HPY04_17990 PF06228 Haem utilisation ChuX/HutX HPY04_17995 PF04055 Radical SAM superfamily HPY04_18000 PF03544 Gram-negative bacterial TonB protein C-terminal HPY04_18005 PF01618 MotA/TolQ/ExbB proton channel family HPY04_18010 PF02472 Biopolymer transport protein ExbD/TolR HPY04_18015 PF01497 Periplasmic binding protein HPY04_18020 PF01032 FecCD transport family HPY04_18025 PF00005 ABC transporter HPY04_18055 PF00672 HAMP domain HPY04_18055 PF02743 Cache domain HPY04_18055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_18060 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY04_18060 PF03473 MOSC domain HPY04_18060 PF03473 MOSC domain HPY04_18060 PF03476 MOSC N-terminal beta barrel domain HPY04_18060 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY04_18060 PF03476 MOSC N-terminal beta barrel domain HPY04_18065 PF01979 Amidohydrolase family HPY04_18070 PF05958 tRNA (Uracil-5-)-methyltransferase HPY04_18075 PF05661 Protein of unknown function (DUF808) HPY04_18085 PF00313 'Cold-shock' DNA-binding domain HPY04_18100 PF00072 Response regulator receiver domain HPY04_18100 PF12833 Helix-turn-helix domain HPY04_18110 PF08448 PAS fold HPY04_18110 PF00990 Diguanylate cyclase, GGDEF domain HPY04_18115 PF08220 DeoR-like helix-turn-helix domain HPY04_18115 PF00455 DeoR C terminal sensor domain HPY04_18130 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_18135 PF14785 Maltose transport system permease protein MalF P2 domain HPY04_18135 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_18140 PF01547 Bacterial extracellular solute-binding protein HPY04_18145 PF00005 ABC transporter HPY04_18145 PF08402 TOBE domain HPY04_18150 PF13302 Acetyltransferase (GNAT) domain HPY04_18165 PF01906 Putative heavy-metal-binding HPY04_18170 PF00196 Bacterial regulatory proteins, luxR family HPY04_18180 PF01584 CheW-like domain HPY04_18180 PF00072 Response regulator receiver domain HPY04_18185 PF01047 MarR family HPY04_18190 PF00990 Diguanylate cyclase, GGDEF domain HPY04_18205 PF00563 EAL domain HPY04_18205 PF00990 Diguanylate cyclase, GGDEF domain HPY04_18205 PF03707 Bacterial signalling protein N terminal repeat HPY04_18225 PF03466 LysR substrate binding domain HPY04_18225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_18230 PF00563 EAL domain HPY04_18230 PF00990 Diguanylate cyclase, GGDEF domain HPY04_18240 PF02678 Pirin HPY04_18240 PF05726 Pirin C-terminal cupin domain HPY04_18245 PF06865 Pyrimidine/purine nucleoside phosphorylase HPY04_18255 PF07690 Major Facilitator Superfamily HPY04_18260 PF13654 AAA domain HPY04_18260 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY04_18270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY04_18270 PF00005 ABC transporter HPY04_18275 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY04_18280 PF17200 Single Cache domain 2 HPY04_18280 PF00672 HAMP domain HPY04_18280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_18290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_18290 PF03466 LysR substrate binding domain HPY04_18300 PF02652 L-lactate permease HPY04_18305 PF01070 FMN-dependent dehydrogenase HPY04_18315 PF03618 Kinase/pyrophosphorylase HPY04_18320 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HPY04_18320 PF00391 PEP-utilising enzyme, mobile domain HPY04_18320 PF02896 PEP-utilising enzyme, TIM barrel domain HPY04_18325 PF08447 PAS fold HPY04_18325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_18330 PF01554 MatE HPY04_18335 PF01915 Glycosyl hydrolase family 3 C-terminal domain HPY04_18335 PF14310 Fibronectin type III-like domain HPY04_18335 PF00933 Glycosyl hydrolase family 3 N terminal domain HPY04_18345 PF02264 LamB porin HPY04_18350 PF00722 Glycosyl hydrolases family 16 HPY04_18360 PF00356 Bacterial regulatory proteins, lacI family HPY04_18370 PF00005 ABC transporter HPY04_18370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY04_18375 PF00005 ABC transporter HPY04_18375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY04_18380 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_18385 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_18390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY04_18400 PF00271 Helicase conserved C-terminal domain HPY04_18400 PF00270 DEAD/DEAH box helicase HPY04_18405 PF03466 LysR substrate binding domain HPY04_18405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_18415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY04_18425 PF00005 ABC transporter HPY04_18425 PF00664 ABC transporter transmembrane region HPY04_18435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY04_18445 PF01810 LysE type translocator HPY04_18450 PF12833 Helix-turn-helix domain HPY04_18465 PF01557 Fumarylacetoacetate (FAA) hydrolase family HPY04_18470 PF01047 MarR family HPY04_18475 PF02566 OsmC-like protein HPY04_18480 PF13609 Gram-negative porin HPY04_18485 PF00892 EamA-like transporter family HPY04_18490 PF00462 Glutaredoxin HPY04_18495 PF07670 Nucleoside recognition HPY04_18500 PF07670 Nucleoside recognition HPY04_18505 PF03600 Citrate transporter HPY04_18515 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HPY04_18515 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY04_18520 PF06029 AlkA N-terminal domain HPY04_18520 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY04_18525 PF07681 DoxX HPY04_18530 PF03466 LysR substrate binding domain HPY04_18530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_18550 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HPY04_18560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_18560 PF03466 LysR substrate binding domain HPY04_18565 PF16657 Maltogenic Amylase, C-terminal domain HPY04_18565 PF00128 Alpha amylase, catalytic domain HPY04_18580 PF07148 Maltose operon periplasmic protein precursor (MalM) HPY04_18585 PF02264 LamB porin HPY04_18590 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY04_18590 PF00128 Alpha amylase, catalytic domain HPY04_18600 PF00672 HAMP domain HPY04_18600 PF12729 Four helix bundle sensory module for signal transduction HPY04_18600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_18610 PF00672 HAMP domain HPY04_18610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_18620 PF00793 DAHP synthetase I family HPY04_18625 PF00005 ABC transporter HPY04_18630 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_18635 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY04_18640 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_18645 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY04_18645 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY04_18645 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY04_18645 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY04_18650 PF02378 Phosphotransferase system, EIIC HPY04_18650 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY04_18650 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY04_18655 PF08125 Mannitol dehydrogenase C-terminal domain HPY04_18655 PF01232 Mannitol dehydrogenase Rossmann domain HPY04_18660 PF05068 Mannitol repressor HPY04_18665 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY04_18685 PF00892 EamA-like transporter family HPY04_18700 PF00857 Isochorismatase family HPY04_18710 PF13460 NAD(P)H-binding HPY04_18715 PF03466 LysR substrate binding domain HPY04_18715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_18720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_18720 PF00672 HAMP domain HPY04_18720 PF02743 Cache domain HPY04_18725 PF00106 short chain dehydrogenase HPY04_18730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY04_18730 PF03466 LysR substrate binding domain HPY04_18735 PF04013 Putative SAM-dependent RNA methyltransferase HPY04_18740 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY04_18750 PF13520 Amino acid permease HPY04_18755 PF01276 Orn/Lys/Arg decarboxylase, major domain HPY04_18755 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HPY04_18755 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HPY04_18765 PF00171 Aldehyde dehydrogenase family HPY04_18770 PF01037 Lrp/AsnC ligand binding domain HPY04_18775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_18775 PF00672 HAMP domain HPY04_18775 PF02743 Cache domain HPY04_18785 PF00474 Sodium:solute symporter family HPY04_18795 PF00171 Aldehyde dehydrogenase family HPY04_18795 PF14850 DNA-binding domain of Proline dehydrogenase HPY04_18795 PF01619 Proline dehydrogenase HPY04_18795 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HPY04_18800 PF12833 Helix-turn-helix domain HPY04_18810 PF03781 Sulfatase-modifying factor enzyme 1 HPY04_18815 PF00072 Response regulator receiver domain HPY04_18815 PF00196 Bacterial regulatory proteins, luxR family HPY04_18820 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HPY04_18820 PF01243 Pyridoxamine 5'-phosphate oxidase HPY04_18825 PF00529 HlyD membrane-fusion protein of T1SS HPY04_18840 PF03412 Peptidase C39 family HPY04_18840 PF00005 ABC transporter HPY04_18840 PF00664 ABC transporter transmembrane region HPY04_18850 PF00486 Transcriptional regulatory protein, C terminal HPY04_18850 PF00072 Response regulator receiver domain HPY04_18860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_18860 PF02743 Cache domain HPY04_18860 PF00672 HAMP domain HPY04_18865 PF00072 Response regulator receiver domain HPY04_18865 PF01339 CheB methylesterase HPY04_18870 PF03975 CheD chemotactic sensory transduction HPY04_18875 PF03705 CheR methyltransferase, all-alpha domain HPY04_18875 PF01739 CheR methyltransferase, SAM binding domain HPY04_18880 PF00672 HAMP domain HPY04_18880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY04_18880 PF02203 Tar ligand binding domain homologue HPY04_18885 PF01584 CheW-like domain HPY04_18890 PF01584 CheW-like domain HPY04_18895 PF01584 CheW-like domain HPY04_18895 PF02895 Signal transducing histidine kinase, homodimeric domain HPY04_18895 PF09078 CheY binding HPY04_18895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_18895 PF01627 Hpt domain HPY04_18900 PF00072 Response regulator receiver domain HPY04_18915 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_18920 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY04_18920 PF00528 Binding-protein-dependent transport system inner membrane component HPY04_18925 PF00005 ABC transporter HPY04_18925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY04_18930 PF00884 Sulfatase HPY04_18930 PF08019 Phosphoethanolamine transferase EptA/EptB HPY04_18935 PF08521 Two-component sensor kinase N-terminal HPY04_18935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY04_18935 PF00512 His Kinase A (phospho-acceptor) domain HPY04_18940 PF00072 Response regulator receiver domain HPY04_18940 PF00486 Transcriptional regulatory protein, C terminal HPY04_18960 PF00501 AMP-binding enzyme HPY04_18970 PF13718 GNAT acetyltransferase 2 HPY04_18970 PF05127 Helicase HPY04_18975 PF13416 Bacterial extracellular solute-binding protein