locus-tag class description HPY06_00005 PF08299 Bacterial dnaA protein helix-turn-helix HPY06_00005 PF00308 Bacterial dnaA protein HPY06_00005 PF11638 DnaA N-terminal domain HPY06_00010 PF02767 DNA polymerase III beta subunit, central domain HPY06_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HPY06_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HPY06_00015 PF02463 RecF/RecN/SMC N terminal domain HPY06_00020 PF01751 Toprim domain HPY06_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_00020 PF18053 DNA gyrase B subunit insert domain HPY06_00020 PF00986 DNA gyrase B subunit, carboxyl terminus HPY06_00020 PF00204 DNA gyrase B HPY06_00030 PF00011 Hsp20/alpha crystallin family HPY06_00035 PF00155 Aminotransferase class I and II HPY06_00040 PF05746 DALR anticodon binding domain HPY06_00040 PF02092 Glycyl-tRNA synthetase beta subunit HPY06_00045 PF02091 Glycyl-tRNA synthetase alpha subunit HPY06_00050 PF01169 Uncharacterized protein family UPF0016 HPY06_00060 PF01206 Sulfurtransferase TusA HPY06_00070 PF00107 Zinc-binding dehydrogenase HPY06_00070 PF08240 Alcohol dehydrogenase GroES-like domain HPY06_00075 PF00291 Pyridoxal-phosphate dependent enzyme HPY06_00075 PF00585 C-terminal regulatory domain of Threonine dehydratase HPY06_00080 PF00920 Dehydratase family HPY06_00085 PF01063 Amino-transferase class IV HPY06_00095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY06_00095 PF00205 Thiamine pyrophosphate enzyme, central domain HPY06_00095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY06_00100 PF01078 Magnesium chelatase, subunit ChlI HPY06_00100 PF13335 Magnesium chelatase, subunit ChlI C-terminal HPY06_00105 PF01553 Acyltransferase HPY06_00110 PF01609 Transposase DDE domain HPY06_00110 PF02281 Transposase Tn5 dimerisation domain HPY06_00110 PF14706 Transposase DNA-binding HPY06_00115 PF01323 DSBA-like thioredoxin domain HPY06_00120 PF01636 Phosphotransferase enzyme family HPY06_00125 PF13746 4Fe-4S dicluster domain HPY06_00125 PF12801 4Fe-4S binding domain HPY06_00125 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HPY06_00130 PF06288 Protein of unknown function (DUF1040) HPY06_00135 PF07070 SpoOM protein HPY06_00140 PF03006 Haemolysin-III related HPY06_00150 PF02386 Cation transport protein HPY06_00155 PF02254 TrkA-N domain HPY06_00155 PF02080 TrkA-C domain HPY06_00160 PF01029 NusB family HPY06_00160 PF01189 16S rRNA methyltransferase RsmB/F HPY06_00165 PF00551 Formyl transferase HPY06_00165 PF02911 Formyl transferase, C-terminal domain HPY06_00170 PF01327 Polypeptide deformylase HPY06_00175 PF01476 LysM domain HPY06_00180 PF02481 DNA recombination-mediator protein A HPY06_00180 PF17782 DprA winged helix domain HPY06_00185 PF04361 Protein of unknown function (DUF494) HPY06_00190 PF01396 Topoisomerase DNA binding C4 zinc finger HPY06_00195 PF02222 ATP-grasp domain HPY06_00195 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HPY06_00200 PF00731 AIR carboxylase HPY06_00205 PF01300 Telomere recombination HPY06_00210 PF01218 Coproporphyrinogen III oxidase HPY06_00215 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HPY06_00215 PF08501 Shikimate dehydrogenase substrate binding domain HPY06_00215 PF01488 Shikimate / quinate 5-dehydrogenase HPY06_00225 PF00132 Bacterial transferase hexapeptide (six repeats) HPY06_00265 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HPY06_00270 PF13667 ThiC-associated domain HPY06_00270 PF01964 Radical SAM ThiC family HPY06_00275 PF02581 Thiamine monophosphate synthase HPY06_00280 PF00899 ThiF family HPY06_00285 PF02597 ThiS family HPY06_00290 PF05690 Thiazole biosynthesis protein ThiG HPY06_00295 PF06968 Biotin and Thiamin Synthesis associated domain HPY06_00295 PF04055 Radical SAM superfamily HPY06_00300 PF01321 Creatinase/Prolidase N-terminal domain HPY06_00300 PF00557 Metallopeptidase family M24 HPY06_00300 PF01321 Creatinase/Prolidase N-terminal domain HPY06_00300 PF00557 Metallopeptidase family M24 HPY06_00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_00305 PF03466 LysR substrate binding domain HPY06_00310 PF07690 Major Facilitator Superfamily HPY06_00320 PF01037 Lrp/AsnC ligand binding domain HPY06_00325 PF00563 EAL domain HPY06_00325 PF00990 Diguanylate cyclase, GGDEF domain HPY06_00325 PF08448 PAS fold HPY06_00330 PF04445 Putative SAM-dependent methyltransferase HPY06_00340 PF00892 EamA-like transporter family HPY06_00345 PF00582 Universal stress protein family HPY06_00350 PF00210 Ferritin-like domain HPY06_00355 PF10625 Universal stress protein B (UspB) HPY06_00370 PF02646 RmuC family HPY06_00375 PF01209 ubiE/COQ5 methyltransferase family HPY06_00380 PF02036 SCP-2 sterol transfer family HPY06_00385 PF03109 ABC1 family HPY06_00390 PF02416 mttA/Hcf106 family HPY06_00395 PF02416 mttA/Hcf106 family HPY06_00400 PF00902 Sec-independent protein translocase protein (TatC) HPY06_00405 PF00034 Cytochrome c HPY06_00405 PF03150 Di-haem cytochrome c peroxidase HPY06_00410 PF01554 MatE HPY06_00420 PF01726 LexA DNA binding domain HPY06_00420 PF00717 Peptidase S24-like HPY06_00425 PF01553 Acyltransferase HPY06_00430 PF01040 UbiA prenyltransferase family HPY06_00435 PF04345 Chorismate lyase HPY06_00440 PF03748 Flagellar basal body-associated protein FliL HPY06_00445 PF00672 HAMP domain HPY06_00445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_00445 PF02203 Tar ligand binding domain homologue HPY06_00450 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HPY06_00450 PF01694 Rhomboid family HPY06_00455 PF00581 Rhodanese-like domain HPY06_00460 PF01026 TatD related DNase HPY06_00465 PF00490 Delta-aminolevulinic acid dehydratase HPY06_00475 PF01612 3'-5' exonuclease HPY06_00475 PF00476 DNA polymerase family A HPY06_00475 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY06_00475 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY06_00480 PF01926 50S ribosome-binding GTPase HPY06_00485 PF00034 Cytochrome c HPY06_00495 PF04220 Der GTPase activator (YihI) HPY06_00500 PF10675 Protein of unknown function (DUF2489) HPY06_00505 PF06969 HemN C-terminal domain HPY06_00505 PF04055 Radical SAM superfamily HPY06_00510 PF07219 HemY protein N-terminus HPY06_00515 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HPY06_00520 PF02602 Uroporphyrinogen-III synthase HemD HPY06_00525 PF03900 Porphobilinogen deaminase, C-terminal domain HPY06_00525 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HPY06_00530 PF01295 Adenylate cyclase, class-I HPY06_00530 PF12633 Adenylate cyclase NT domain HPY06_00535 PF01491 Frataxin-like domain HPY06_00545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY06_00545 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HPY06_00550 PF01678 Diaminopimelate epimerase HPY06_00555 PF04340 Protein of unknown function, DUF484 HPY06_00560 PF02899 Phage integrase, N-terminal SAM-like domain HPY06_00560 PF00589 Phage integrase family HPY06_00565 PF13419 Haloacid dehalogenase-like hydrolase HPY06_00570 PF08495 FIST N domain HPY06_00570 PF00563 EAL domain HPY06_00570 PF10442 FIST C domain HPY06_00570 PF00990 Diguanylate cyclase, GGDEF domain HPY06_00590 PF12146 Serine aminopeptidase, S33 HPY06_00595 PF01810 LysE type translocator HPY06_00600 PF08668 HDOD domain HPY06_00600 PF00563 EAL domain HPY06_00605 PF00210 Ferritin-like domain HPY06_00640 PF02881 SRP54-type protein, helical bundle domain HPY06_00640 PF00448 SRP54-type protein, GTPase domain HPY06_00645 PF00005 ABC transporter HPY06_00650 PF18075 FtsX extracellular domain HPY06_00655 PF00140 Sigma-70 factor, region 1.2 HPY06_00655 PF04545 Sigma-70, region 4 HPY06_00655 PF04542 Sigma-70 region 2 HPY06_00660 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY06_00660 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY06_00665 PF00440 Bacterial regulatory proteins, tetR family HPY06_00675 PF05958 tRNA (Uracil-5-)-methyltransferase HPY06_00680 PF00593 TonB dependent receptor HPY06_00680 PF07715 TonB-dependent Receptor Plug Domain HPY06_00685 PF00082 Subtilase family HPY06_00685 PF04151 Bacterial pre-peptidase C-terminal domain HPY06_00685 PF05922 Peptidase inhibitor I9 HPY06_00690 PF01177 Asp/Glu/Hydantoin racemase HPY06_00755 PF00962 Adenosine/AMP deaminase HPY06_00760 PF00563 EAL domain HPY06_00760 PF13188 PAS domain HPY06_00760 PF03707 Bacterial signalling protein N terminal repeat HPY06_00760 PF00990 Diguanylate cyclase, GGDEF domain HPY06_00765 PF00158 Sigma-54 interaction domain HPY06_00765 PF00072 Response regulator receiver domain HPY06_00765 PF02954 Bacterial regulatory protein, Fis family HPY06_00770 PF00989 PAS fold HPY06_00770 PF00512 His Kinase A (phospho-acceptor) domain HPY06_00770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_00780 PF03951 Glutamine synthetase, beta-Grasp domain HPY06_00780 PF00120 Glutamine synthetase, catalytic domain HPY06_00800 PF03631 Virulence factor BrkB HPY06_00805 PF02580 D-Tyr-tRNA(Tyr) deacylase HPY06_00810 PF00583 Acetyltransferase (GNAT) family HPY06_00810 PF09500 Putative thioesterase (yiiD_Cterm) HPY06_00820 PF01293 Phosphoenolpyruvate carboxykinase HPY06_00825 PF01430 Hsp33 protein HPY06_00830 PF01479 S4 domain HPY06_00835 PF11356 Type II secretion system protein C HPY06_00840 PF00263 Bacterial type II and III secretion system protein HPY06_00840 PF03958 Bacterial type II/III secretion system short domain HPY06_00845 PF00437 Type II/IV secretion system protein HPY06_00850 PF00482 Type II secretion system (T2SS), protein F HPY06_00855 PF07963 Prokaryotic N-terminal methylation motif HPY06_00855 PF08334 Type II secretion system (T2SS), protein G HPY06_00860 PF12019 Type II transport protein GspH HPY06_00865 PF07963 Prokaryotic N-terminal methylation motif HPY06_00865 PF02501 Type II secretion system (T2SS), protein I HPY06_00870 PF11612 Type II secretion system (T2SS), protein J HPY06_00870 PF07963 Prokaryotic N-terminal methylation motif HPY06_00875 PF03934 Type II secretion system (T2SS), protein K HPY06_00880 PF05134 Type II secretion system (T2SS), protein L HPY06_00880 PF12693 GspL periplasmic domain HPY06_00885 PF04612 Type II secretion system (T2SS), protein M HPY06_00890 PF01203 Type II secretion system (T2SS), protein N HPY06_00895 PF00459 Inositol monophosphatase family HPY06_00900 PF00293 NUDIX domain HPY06_00905 PF01521 Iron-sulphur cluster biosynthesis HPY06_00905 PF01106 NifU-like domain HPY06_00910 PF00156 Phosphoribosyl transferase domain HPY06_00920 PF00561 alpha/beta hydrolase fold HPY06_00930 PF00575 S1 RNA binding domain HPY06_00930 PF09371 Tex-like protein N-terminal domain HPY06_00930 PF17674 HHH domain HPY06_00930 PF16921 Tex protein YqgF-like domain HPY06_00935 PF03449 Transcription elongation factor, N-terminal HPY06_00935 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY06_00940 PF00990 Diguanylate cyclase, GGDEF domain HPY06_00940 PF17152 Periplasmic sensor domain HPY06_00945 PF00072 Response regulator receiver domain HPY06_00945 PF00486 Transcriptional regulatory protein, C terminal HPY06_00950 PF00512 His Kinase A (phospho-acceptor) domain HPY06_00950 PF00672 HAMP domain HPY06_00950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_00955 PF00860 Permease family HPY06_00960 PF17191 RecG wedge domain HPY06_00960 PF00271 Helicase conserved C-terminal domain HPY06_00960 PF00270 DEAD/DEAH box helicase HPY06_00965 PF04607 Region found in RelA / SpoT proteins HPY06_00965 PF13291 ACT domain HPY06_00965 PF02824 TGS domain HPY06_00970 PF01192 RNA polymerase Rpb6 HPY06_00975 PF00625 Guanylate kinase HPY06_00980 PF02592 Putative vitamin uptake transporter HPY06_00985 PF00474 Sodium:solute symporter family HPY06_00995 PF03471 Transporter associated domain HPY06_00995 PF00999 Sodium/hydrogen exchanger family HPY06_00995 PF02080 TrkA-C domain HPY06_01000 PF00196 Bacterial regulatory proteins, luxR family HPY06_01000 PF00072 Response regulator receiver domain HPY06_01005 PF11412 Disulphide bond corrector protein DsbC HPY06_01005 PF02683 Cytochrome C biogenesis protein transmembrane region HPY06_01010 PF01609 Transposase DDE domain HPY06_01010 PF14706 Transposase DNA-binding HPY06_01010 PF02281 Transposase Tn5 dimerisation domain HPY06_01015 PF03714 Bacterial pullanase-associated domain HPY06_01015 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY06_01015 PF11852 Domain of unknown function (DUF3372) HPY06_01015 PF17967 Pullulanase N2 domain HPY06_01015 PF18494 Pullulanase Ins domain HPY06_01020 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY06_01025 PF10415 Fumarase C C-terminus HPY06_01025 PF00206 Lyase HPY06_01030 PF17158 Membrane-associated sensor, integral membrane domain HPY06_01030 PF00990 Diguanylate cyclase, GGDEF domain HPY06_01035 PF04186 FxsA cytoplasmic membrane protein HPY06_01040 PF00588 SpoU rRNA Methylase family HPY06_01045 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY06_01045 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY06_01050 PF16527 Two-component sensor protein CpxA, periplasmic domain HPY06_01050 PF00512 His Kinase A (phospho-acceptor) domain HPY06_01050 PF00672 HAMP domain HPY06_01050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_01055 PF00072 Response regulator receiver domain HPY06_01055 PF00486 Transcriptional regulatory protein, C terminal HPY06_01065 PF01545 Cation efflux family HPY06_01065 PF16916 Dimerisation domain of Zinc Transporter HPY06_01070 PF00365 Phosphofructokinase HPY06_01075 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HPY06_01080 PF06005 Cell division protein ZapB HPY06_01085 PF02219 Methylenetetrahydrofolate reductase HPY06_01090 PF03447 Homoserine dehydrogenase, NAD binding domain HPY06_01090 PF00696 Amino acid kinase family HPY06_01090 PF00742 Homoserine dehydrogenase HPY06_01095 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY06_01100 PF01340 Met Apo-repressor, MetJ HPY06_01105 PF03949 Malic enzyme, NAD binding domain HPY06_01105 PF00390 Malic enzyme, N-terminal domain HPY06_01110 PF01197 Ribosomal protein L31 HPY06_01115 PF00271 Helicase conserved C-terminal domain HPY06_01115 PF18074 Primosomal protein N C-terminal domain HPY06_01115 PF17764 3′ DNA-binding domain (3′BD) HPY06_01115 PF00270 DEAD/DEAH box helicase HPY06_01115 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HPY06_01120 PF00356 Bacterial regulatory proteins, lacI family HPY06_01125 PF05036 Sporulation related domain HPY06_01130 PF00227 Proteasome subunit HPY06_01135 PF10431 C-terminal, D2-small domain, of ClpB protein HPY06_01135 PF00004 ATPase family associated with various cellular activities (AAA) HPY06_01135 PF07724 AAA domain (Cdc48 subfamily) HPY06_01140 PF01040 UbiA prenyltransferase family HPY06_01145 PF03737 Aldolase/RraA HPY06_01150 PF01554 MatE HPY06_01155 PF00121 Triosephosphate isomerase HPY06_01175 PF00455 DeoR C terminal sensor domain HPY06_01175 PF08220 DeoR-like helix-turn-helix domain HPY06_01180 PF00166 Chaperonin 10 Kd subunit HPY06_01185 PF00118 TCP-1/cpn60 chaperonin family HPY06_01195 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HPY06_01210 PF04055 Radical SAM superfamily HPY06_01215 PF01132 Elongation factor P (EF-P) OB domain HPY06_01215 PF08207 Elongation factor P (EF-P) KOW-like domain HPY06_01215 PF09285 Elongation factor P, C-terminal HPY06_01220 PF02313 Fumarate reductase subunit D HPY06_01225 PF02300 Fumarate reductase subunit C HPY06_01230 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY06_01230 PF13183 4Fe-4S dicluster domain HPY06_01235 PF02910 Fumarate reductase flavoprotein C-term HPY06_01235 PF00890 FAD binding domain HPY06_01240 PF00152 tRNA synthetases class II (D, K and N) HPY06_01245 PF00581 Rhodanese-like domain HPY06_01250 PF02556 Preprotein translocase subunit SecB HPY06_01255 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HPY06_01255 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HPY06_01260 PF00132 Bacterial transferase hexapeptide (six repeats) HPY06_01260 PF06426 Serine acetyltransferase, N-terminal HPY06_01270 PF00311 Phosphoenolpyruvate carboxylase HPY06_01275 PF07687 Peptidase dimerisation domain HPY06_01275 PF01546 Peptidase family M20/M25/M40 HPY06_01280 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY06_01280 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY06_01285 PF00696 Amino acid kinase family HPY06_01290 PF00764 Arginosuccinate synthase HPY06_01295 PF14698 Argininosuccinate lyase C-terminal HPY06_01295 PF00206 Lyase HPY06_01305 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY06_01305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY06_01310 PF08534 Redoxin HPY06_01310 PF00462 Glutaredoxin HPY06_01315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_01315 PF03466 LysR substrate binding domain HPY06_01320 PF00905 Penicillin binding protein transpeptidase domain HPY06_01320 PF00912 Transglycosylase HPY06_01320 PF17092 Penicillin-binding protein OB-like domain HPY06_01345 PF11741 AMIN domain HPY06_01345 PF00263 Bacterial type II and III secretion system protein HPY06_01345 PF03958 Bacterial type II/III secretion system short domain HPY06_01345 PF07660 Secretin and TonB N terminus short domain HPY06_01350 PF01202 Shikimate kinase HPY06_01355 PF01761 3-dehydroquinate synthase HPY06_01365 PF02086 D12 class N6 adenine-specific DNA methyltransferase HPY06_01370 PF00834 Ribulose-phosphate 3 epimerase family HPY06_01375 PF13419 Haloacid dehalogenase-like hydrolase HPY06_01380 PF00579 tRNA synthetases class I (W and Y) HPY06_01395 PF00919 Uncharacterized protein family UPF0004 HPY06_01395 PF18693 TRAM domain HPY06_01395 PF04055 Radical SAM superfamily HPY06_01400 PF00117 Glutamine amidotransferase class-I HPY06_01405 PF00202 Aminotransferase class-III HPY06_01410 PF04958 Arginine N-succinyltransferase beta subunit HPY06_01415 PF00171 Aldehyde dehydrogenase family HPY06_01425 PF13545 Crp-like helix-turn-helix domain HPY06_01425 PF00027 Cyclic nucleotide-binding domain HPY06_01430 PF00485 Phosphoribulokinase / Uridine kinase family HPY06_01435 PF06794 Uncharacterised protein family (UPF0270) HPY06_01440 PF00561 alpha/beta hydrolase fold HPY06_01450 PF12848 ABC transporter HPY06_01450 PF00005 ABC transporter HPY06_01455 PF02525 Flavodoxin-like fold HPY06_01460 PF00999 Sodium/hydrogen exchanger family HPY06_01460 PF02254 TrkA-N domain HPY06_01470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY06_01475 PF01112 Asparaginase HPY06_01480 PF00709 Adenylosuccinate synthetase HPY06_01485 PF08238 Sel1 repeat HPY06_01490 PF00884 Sulfatase HPY06_01490 PF11893 Domain of unknown function (DUF3413) HPY06_01495 PF00575 S1 RNA binding domain HPY06_01495 PF17876 Cold shock domain HPY06_01495 PF08461 Ribonuclease R winged-helix domain HPY06_01495 PF08206 Ribonuclease B OB domain HPY06_01495 PF00773 RNB domain HPY06_01500 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY06_01500 PF00588 SpoU rRNA Methylase family HPY06_01505 PF00338 Ribosomal protein S10p/S20e HPY06_01510 PF00297 Ribosomal protein L3 HPY06_01515 PF00573 Ribosomal protein L4/L1 family HPY06_01520 PF00276 Ribosomal protein L23 HPY06_01525 PF00181 Ribosomal Proteins L2, RNA binding domain HPY06_01525 PF03947 Ribosomal Proteins L2, C-terminal domain HPY06_01530 PF00203 Ribosomal protein S19 HPY06_01535 PF00237 Ribosomal protein L22p/L17e HPY06_01540 PF07650 KH domain HPY06_01540 PF00189 Ribosomal protein S3, C-terminal domain HPY06_01545 PF00252 Ribosomal protein L16p/L10e HPY06_01550 PF00831 Ribosomal L29 protein HPY06_01555 PF00366 Ribosomal protein S17 HPY06_01560 PF00238 Ribosomal protein L14p/L23e HPY06_01565 PF00467 KOW motif HPY06_01565 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HPY06_01570 PF00673 ribosomal L5P family C-terminus HPY06_01570 PF00281 Ribosomal protein L5 HPY06_01575 PF00253 Ribosomal protein S14p/S29e HPY06_01580 PF00410 Ribosomal protein S8 HPY06_01585 PF00347 Ribosomal protein L6 HPY06_01590 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HPY06_01595 PF00333 Ribosomal protein S5, N-terminal domain HPY06_01595 PF03719 Ribosomal protein S5, C-terminal domain HPY06_01600 PF00327 Ribosomal protein L30p/L7e HPY06_01605 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HPY06_01610 PF00344 SecY translocase HPY06_01615 PF00444 Ribosomal protein L36 HPY06_01620 PF00416 Ribosomal protein S13/S18 HPY06_01625 PF00411 Ribosomal protein S11 HPY06_01630 PF00163 Ribosomal protein S4/S9 N-terminal domain HPY06_01630 PF01479 S4 domain HPY06_01635 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HPY06_01635 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HPY06_01635 PF01000 RNA polymerase Rpb3/RpoA insert domain HPY06_01640 PF01196 Ribosomal protein L17 HPY06_01650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY06_01650 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY06_01655 PF04225 Opacity-associated protein A LysM-like domain HPY06_01655 PF08525 Opacity-associated protein A N-terminal motif HPY06_01660 PF00892 EamA-like transporter family HPY06_01665 PF13673 Acetyltransferase (GNAT) domain HPY06_01670 PF00271 Helicase conserved C-terminal domain HPY06_01670 PF03880 DbpA RNA binding domain HPY06_01670 PF00270 DEAD/DEAH box helicase HPY06_01680 PF00149 Calcineurin-like phosphoesterase HPY06_01680 PF02872 5'-nucleotidase, C-terminal domain HPY06_01685 PF14824 Sirohaem biosynthesis protein central HPY06_01685 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY06_01685 PF10414 Sirohaem synthase dimerisation region HPY06_01690 PF01507 Phosphoadenosine phosphosulfate reductase family HPY06_01695 PF00009 Elongation factor Tu GTP binding domain HPY06_01720 PF00005 ABC transporter HPY06_01730 PF10795 Protein of unknown function (DUF2607) HPY06_01735 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HPY06_01740 PF01625 Peptide methionine sulfoxide reductase HPY06_01745 PF17243 POTRA domain TamA domain 1 HPY06_01745 PF07244 Surface antigen variable number repeat HPY06_01745 PF01103 Surface antigen HPY06_01750 PF04357 TamB, inner membrane protein subunit of TAM complex HPY06_01755 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like HPY06_01760 PF00719 Inorganic pyrophosphatase HPY06_01765 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HPY06_01770 PF08245 Mur ligase middle domain HPY06_01770 PF02875 Mur ligase family, glutamate ligase domain HPY06_01770 PF01225 Mur ligase family, catalytic domain HPY06_01775 PF02441 Flavoprotein HPY06_01785 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_01790 PF00005 ABC transporter HPY06_01795 PF04751 Protein of unknown function (DUF615) HPY06_01800 PF01523 Putative modulator of DNA gyrase HPY06_01805 PF03448 MgtE intracellular N domain HPY06_01805 PF01769 Divalent cation transporter HPY06_01805 PF00571 CBS domain HPY06_01810 PF00381 PTS HPr component phosphorylation site HPY06_01815 PF03668 P-loop ATPase protein family HPY06_01820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY06_01825 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY06_01830 PF04552 Sigma-54, DNA binding domain HPY06_01830 PF04963 Sigma-54 factor, core binding domain HPY06_01830 PF00309 Sigma-54 factor, Activator interacting domain (AID) HPY06_01835 PF12399 Branched-chain amino acid ATP-binding cassette transporter HPY06_01835 PF00005 ABC transporter HPY06_01840 PF03968 OstA-like protein HPY06_01855 PF00571 CBS domain HPY06_01855 PF01380 SIS domain HPY06_01860 PF01699 Sodium/calcium exchanger protein HPY06_01865 PF00005 ABC transporter HPY06_01870 PF02405 Permease MlaE HPY06_01875 PF02470 MlaD protein HPY06_01880 PF05494 MlaC protein HPY06_01890 PF01722 BolA-like protein HPY06_01895 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY06_01900 PF01553 Acyltransferase HPY06_01905 PF01042 Endoribonuclease L-PSP HPY06_01910 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HPY06_01910 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HPY06_01915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY06_01915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY06_01920 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY06_01920 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY06_01925 PF02562 PhoH-like protein HPY06_01925 PF13638 PIN domain HPY06_01930 PF00176 SNF2 family N-terminal domain HPY06_01930 PF12137 RNA polymerase recycling family C-terminal HPY06_01930 PF18337 RapA N-terminal Tudor like domain HPY06_01930 PF00271 Helicase conserved C-terminal domain HPY06_01930 PF18339 RapA N-terminal Tudor like domain 1 HPY06_01935 PF00849 RNA pseudouridylate synthase HPY06_01940 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY06_01940 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY06_01945 PF10458 Valyl tRNA synthetase tRNA binding arm HPY06_01945 PF00133 tRNA synthetases class I (I, L, M and V) HPY06_01945 PF08264 Anticodon-binding domain of tRNA HPY06_01950 PF04364 DNA polymerase III chi subunit, HolC HPY06_01955 PF00883 Cytosol aminopeptidase family, catalytic domain HPY06_01955 PF02789 Cytosol aminopeptidase family, N-terminal domain HPY06_01960 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY06_01965 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY06_01980 PF00072 Response regulator receiver domain HPY06_02020 PF00694 Aconitase C-terminal domain HPY06_02025 PF00330 Aconitase family (aconitate hydratase) HPY06_02030 PF00180 Isocitrate/isopropylmalate dehydrogenase HPY06_02035 PF08502 LeuA allosteric (dimerisation) domain HPY06_02035 PF00682 HMGL-like HPY06_02040 PF01569 PAP2 superfamily HPY06_02050 PF03466 LysR substrate binding domain HPY06_02050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_02055 PF00501 AMP-binding enzyme HPY06_02060 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY06_02060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY06_02060 PF00205 Thiamine pyrophosphate enzyme, central domain HPY06_02065 PF10369 Small subunit of acetolactate synthase HPY06_02070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY06_02070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY06_02070 PF01842 ACT domain HPY06_02075 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HPY06_02080 PF01812 5-formyltetrahydrofolate cyclo-ligase family HPY06_02090 PF05164 Cell division protein ZapA HPY06_02095 PF03695 Uncharacterised protein family (UPF0149) HPY06_02100 PF01494 FAD binding domain HPY06_02105 PF01494 FAD binding domain HPY06_02120 PF03937 Flavinator of succinate dehydrogenase HPY06_02130 PF00890 FAD binding domain HPY06_02130 PF02910 Fumarate reductase flavoprotein C-term HPY06_02135 PF04542 Sigma-70 region 2 HPY06_02135 PF08281 Sigma-70, region 4 HPY06_02140 PF03872 Anti sigma-E protein RseA, N-terminal domain HPY06_02140 PF03873 Anti sigma-E protein RseA, C-terminal domain HPY06_02145 PF17188 MucB/RseB C-terminal domain HPY06_02145 PF03888 MucB/RseB N-terminal domain HPY06_02155 PF06421 GTP-binding protein LepA C-terminus HPY06_02155 PF03144 Elongation factor Tu domain 2 HPY06_02155 PF00009 Elongation factor Tu GTP binding domain HPY06_02155 PF00679 Elongation factor G C-terminus HPY06_02160 PF10502 Signal peptidase, peptidase S26 HPY06_02165 PF00035 Double-stranded RNA binding motif HPY06_02165 PF14622 Ribonuclease-III-like HPY06_02170 PF07650 KH domain HPY06_02170 PF01926 50S ribosome-binding GTPase HPY06_02175 PF02565 Recombination protein O C terminal HPY06_02175 PF11967 Recombination protein O N terminal HPY06_02180 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HPY06_02185 PF01648 4'-phosphopantetheinyl transferase superfamily HPY06_02200 PF00563 EAL domain HPY06_02200 PF00990 Diguanylate cyclase, GGDEF domain HPY06_02205 PF00512 His Kinase A (phospho-acceptor) domain HPY06_02205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_02205 PF01627 Hpt domain HPY06_02205 PF00072 Response regulator receiver domain HPY06_02205 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY06_02205 PF00672 HAMP domain HPY06_02210 PF05958 tRNA (Uracil-5-)-methyltransferase HPY06_02210 PF01938 TRAM domain HPY06_02215 PF02824 TGS domain HPY06_02215 PF13291 ACT domain HPY06_02215 PF04607 Region found in RelA / SpoT proteins HPY06_02220 PF03819 MazG nucleotide pyrophosphohydrolase domain HPY06_02225 PF06418 CTP synthase N-terminus HPY06_02225 PF00117 Glutamine amidotransferase class-I HPY06_02230 PF00113 Enolase, C-terminal TIM barrel domain HPY06_02230 PF03952 Enolase, N-terminal domain HPY06_02235 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY06_02235 PF01743 Poly A polymerase head domain HPY06_02235 PF01966 HD domain HPY06_02240 PF01471 Putative peptidoglycan binding domain HPY06_02240 PF13401 AAA domain HPY06_02250 PF08239 Bacterial SH3 domain HPY06_02255 PF01384 Phosphate transporter family HPY06_02260 PF01865 Protein of unknown function DUF47 HPY06_02265 PF01928 CYTH domain HPY06_02270 PF00672 HAMP domain HPY06_02270 PF02743 Cache domain HPY06_02270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_02275 PF03710 Glutamate-ammonia ligase adenylyltransferase HPY06_02275 PF08335 GlnD PII-uridylyltransferase HPY06_02280 PF00294 pfkB family carbohydrate kinase HPY06_02280 PF01467 Cytidylyltransferase-like HPY06_02285 PF02321 Outer membrane efflux protein HPY06_02290 PF00293 NUDIX domain HPY06_02295 PF06853 Protein of unknown function (DUF1249) HPY06_02300 PF00149 Calcineurin-like phosphoesterase HPY06_02305 PF05728 Uncharacterised protein family (UPF0227) HPY06_02310 PF01751 Toprim domain HPY06_02310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_02310 PF00986 DNA gyrase B subunit, carboxyl terminus HPY06_02310 PF00204 DNA gyrase B HPY06_02315 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY06_02315 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY06_02320 PF03884 DNA gyrase inhibitor YacG HPY06_02325 PF07072 Cell division protein HPY06_02330 PF01121 Dephospho-CoA kinase HPY06_02335 PF01478 Type IV leader peptidase family HPY06_02335 PF06750 Bacterial Peptidase A24 N-terminal domain HPY06_02340 PF00482 Type II secretion system (T2SS), protein F HPY06_02345 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HPY06_02345 PF00437 Type II/IV secretion system protein HPY06_02350 PF00114 Pilin (bacterial filament) HPY06_02350 PF07963 Prokaryotic N-terminal methylation motif HPY06_02355 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HPY06_02355 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HPY06_02360 PF01510 N-acetylmuramoyl-L-alanine amidase HPY06_02365 PF14706 Transposase DNA-binding HPY06_02365 PF02281 Transposase Tn5 dimerisation domain HPY06_02365 PF01609 Transposase DDE domain HPY06_02370 PF00258 Flavodoxin HPY06_02375 PF00589 Phage integrase family HPY06_02375 PF02899 Phage integrase, N-terminal SAM-like domain HPY06_02380 PF13098 Thioredoxin-like domain HPY06_02380 PF10411 Disulfide bond isomerase protein N-terminus HPY06_02385 PF01368 DHH family HPY06_02385 PF17768 RecJ OB domain HPY06_02385 PF02272 DHHA1 domain HPY06_02390 PF07729 FCD domain HPY06_02390 PF00392 Bacterial regulatory proteins, gntR family HPY06_02395 PF17831 Pyruvate dehydrogenase E1 component middle domain HPY06_02395 PF00456 Transketolase, thiamine diphosphate binding domain HPY06_02400 PF02817 e3 binding domain HPY06_02400 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY06_02400 PF00364 Biotin-requiring enzyme HPY06_02405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY06_02405 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY06_02415 PF01795 MraW methylase family HPY06_02420 PF04999 Cell division protein FtsL HPY06_02425 PF03717 Penicillin-binding Protein dimerisation domain HPY06_02425 PF00905 Penicillin binding protein transpeptidase domain HPY06_02430 PF02875 Mur ligase family, glutamate ligase domain HPY06_02430 PF08245 Mur ligase middle domain HPY06_02430 PF01225 Mur ligase family, catalytic domain HPY06_02435 PF08245 Mur ligase middle domain HPY06_02435 PF01225 Mur ligase family, catalytic domain HPY06_02435 PF02875 Mur ligase family, glutamate ligase domain HPY06_02440 PF00953 Glycosyl transferase family 4 HPY06_02440 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HPY06_02445 PF02875 Mur ligase family, glutamate ligase domain HPY06_02445 PF08245 Mur ligase middle domain HPY06_02450 PF01098 Cell cycle protein HPY06_02455 PF04101 Glycosyltransferase family 28 C-terminal domain HPY06_02455 PF03033 Glycosyltransferase family 28 N-terminal domain HPY06_02460 PF02875 Mur ligase family, glutamate ligase domain HPY06_02460 PF01225 Mur ligase family, catalytic domain HPY06_02460 PF08245 Mur ligase middle domain HPY06_02465 PF03799 Cell division protein FtsQ HPY06_02465 PF08478 POTRA domain, FtsQ-type HPY06_02470 PF02491 SHS2 domain inserted in FTSA HPY06_02475 PF12327 FtsZ family, C-terminal domain HPY06_02475 PF00091 Tubulin/FtsZ family, GTPase domain HPY06_02480 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HPY06_02490 PF07516 SecA Wing and Scaffold domain HPY06_02490 PF07517 SecA DEAD-like domain HPY06_02490 PF01043 SecA preprotein cross-linking domain HPY06_02490 PF02810 SEC-C motif HPY06_02495 PF00293 NUDIX domain HPY06_02500 PF05173 Dihydrodipicolinate reductase, C-terminus HPY06_02500 PF01113 Dihydrodipicolinate reductase, N-terminus HPY06_02510 PF00117 Glutamine amidotransferase class-I HPY06_02510 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HPY06_02515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HPY06_02515 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HPY06_02515 PF02142 MGS-like domain HPY06_02530 PF01925 Sulfite exporter TauE/SafE HPY06_02535 PF03466 LysR substrate binding domain HPY06_02535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_02540 PF03458 UPF0126 domain HPY06_02545 PF01497 Periplasmic binding protein HPY06_02555 PF01048 Phosphorylase superfamily HPY06_02565 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY06_02565 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY06_02570 PF01493 GXGXG motif HPY06_02570 PF01645 Conserved region in glutamate synthase HPY06_02570 PF04898 Glutamate synthase central domain HPY06_02570 PF00310 Glutamine amidotransferases class-II HPY06_02575 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY06_02575 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY06_02580 PF00310 Glutamine amidotransferases class-II HPY06_02580 PF01645 Conserved region in glutamate synthase HPY06_02580 PF01493 GXGXG motif HPY06_02580 PF04898 Glutamate synthase central domain HPY06_02585 PF04055 Radical SAM superfamily HPY06_02585 PF16199 Radical_SAM C-terminal domain HPY06_02590 PF01590 GAF domain HPY06_02590 PF00563 EAL domain HPY06_02590 PF00990 Diguanylate cyclase, GGDEF domain HPY06_02590 PF00360 Phytochrome region HPY06_02595 PF00072 Response regulator receiver domain HPY06_02595 PF00989 PAS fold HPY06_02595 PF01627 Hpt domain HPY06_02595 PF18415 Histidine kinase receptor ArcB trans-membrane domain HPY06_02595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_02595 PF00512 His Kinase A (phospho-acceptor) domain HPY06_02600 PF00486 Transcriptional regulatory protein, C terminal HPY06_02600 PF00072 Response regulator receiver domain HPY06_02610 PF03737 Aldolase/RraA HPY06_02625 PF00742 Homoserine dehydrogenase HPY06_02625 PF00696 Amino acid kinase family HPY06_02625 PF03447 Homoserine dehydrogenase, NAD binding domain HPY06_02625 PF01842 ACT domain HPY06_02625 PF13840 ACT domain HPY06_02630 PF00288 GHMP kinases N terminal domain HPY06_02630 PF08544 GHMP kinases C terminal HPY06_02635 PF00291 Pyridoxal-phosphate dependent enzyme HPY06_02635 PF14821 Threonine synthase N terminus HPY06_02640 PF01228 Glycine radical HPY06_02645 PF01261 Xylose isomerase-like TIM barrel HPY06_02650 PF03167 Uracil DNA glycosylase superfamily HPY06_02665 PF01235 Sodium:alanine symporter family HPY06_02670 PF03883 Peroxide stress protein YaaA HPY06_02680 PF01026 TatD related DNase HPY06_02685 PF07662 Na+ dependent nucleoside transporter C-terminus HPY06_02685 PF07670 Nucleoside recognition HPY06_02685 PF01773 Na+ dependent nucleoside transporter N-terminus HPY06_02695 PF01791 DeoC/LacD family aldolase HPY06_02700 PF02885 Glycosyl transferase family, helical bundle domain HPY06_02700 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HPY06_02700 PF00591 Glycosyl transferase family, a/b domain HPY06_02705 PF01676 Metalloenzyme superfamily HPY06_02710 PF01048 Phosphorylase superfamily HPY06_02720 PF18429 Domain of unknown function (DUF5609) HPY06_02730 PF18073 Rubredoxin metal binding domain HPY06_02735 PF14492 Elongation Factor G, domain II HPY06_02735 PF00009 Elongation factor Tu GTP binding domain HPY06_02735 PF03764 Elongation factor G, domain IV HPY06_02735 PF00679 Elongation factor G C-terminus HPY06_02735 PF03144 Elongation factor Tu domain 2 HPY06_02740 PF00501 AMP-binding enzyme HPY06_02745 PF00072 Response regulator receiver domain HPY06_02755 PF16353 Domain of unknown function(DUF4981) HPY06_02755 PF02837 Glycosyl hydrolases family 2, sugar binding domain HPY06_02755 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HPY06_02755 PF02929 Beta galactosidase small chain HPY06_02755 PF00703 Glycosyl hydrolases family 2 HPY06_02760 PF00356 Bacterial regulatory proteins, lacI family HPY06_02765 PF01588 Putative tRNA binding domain HPY06_02775 PF01544 CorA-like Mg2+ transporter protein HPY06_02780 PF18030 RimK PreATP-grasp domain HPY06_02780 PF08443 RimK-like ATP-grasp domain HPY06_02780 PF02080 TrkA-C domain HPY06_02785 PF00583 Acetyltransferase (GNAT) family HPY06_02795 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HPY06_02795 PF14602 Hexapeptide repeat of succinyl-transferase HPY06_02800 PF07130 YebG protein HPY06_02815 PF17946 RecC C-terminal domain HPY06_02820 PF13361 UvrD-like helicase C-terminal domain HPY06_02820 PF00580 UvrD/REP helicase N-terminal domain HPY06_02820 PF12705 PD-(D/E)XK nuclease superfamily HPY06_02825 PF13538 UvrD-like helicase C-terminal domain HPY06_02835 PF00696 Amino acid kinase family HPY06_02835 PF00583 Acetyltransferase (GNAT) family HPY06_02845 PF03562 MltA specific insert domain HPY06_02845 PF06725 3D domain HPY06_02850 PF00899 ThiF family HPY06_02855 PF02657 Fe-S metabolism associated domain HPY06_02860 PF00266 Aminotransferase class-V HPY06_02865 PF01965 DJ-1/PfpI family HPY06_02870 PF02558 Ketopantoate reductase PanE/ApbA HPY06_02870 PF08546 Ketopantoate reductase PanE/ApbA C terminal HPY06_02875 PF03502 Nucleoside-specific channel-forming protein, Tsx HPY06_02885 PF04545 Sigma-70, region 4 HPY06_02885 PF04542 Sigma-70 region 2 HPY06_02895 PF07690 Major Facilitator Superfamily HPY06_02900 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY06_02910 PF05175 Methyltransferase small domain HPY06_02915 PF01722 BolA-like protein HPY06_02920 PF11973 NQRA C-terminal domain HPY06_02920 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HPY06_02925 PF03116 NQR2, RnfD, RnfE family HPY06_02930 PF04205 FMN-binding domain HPY06_02935 PF02508 Rnf-Nqr subunit, membrane protein HPY06_02940 PF02508 Rnf-Nqr subunit, membrane protein HPY06_02945 PF00175 Oxidoreductase NAD-binding domain HPY06_02945 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY06_02945 PF00970 Oxidoreductase FAD-binding domain HPY06_02950 PF02424 ApbE family HPY06_02960 PF00817 impB/mucB/samB family HPY06_02960 PF11798 IMS family HHH motif HPY06_02970 PF00990 Diguanylate cyclase, GGDEF domain HPY06_02970 PF17158 Membrane-associated sensor, integral membrane domain HPY06_02975 PF00209 Sodium:neurotransmitter symporter family HPY06_02985 PF08443 RimK-like ATP-grasp domain HPY06_02985 PF18030 RimK PreATP-grasp domain HPY06_02990 PF08443 RimK-like ATP-grasp domain HPY06_02990 PF18030 RimK PreATP-grasp domain HPY06_02995 PF01546 Peptidase family M20/M25/M40 HPY06_02995 PF07687 Peptidase dimerisation domain HPY06_03000 PF00860 Permease family HPY06_03005 PF00156 Phosphoribosyl transferase domain HPY06_03015 PF07417 Sigma factor-binding transcriptional regulator Crl HPY06_03020 PF00696 Amino acid kinase family HPY06_03020 PF01472 PUA domain HPY06_03025 PF00171 Aldehyde dehydrogenase family HPY06_03030 PF03477 ATP cone domain HPY06_03035 PF01872 RibD C-terminal domain HPY06_03035 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY06_03040 PF00677 Lumazine binding domain HPY06_03045 PF00925 GTP cyclohydrolase II HPY06_03045 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY06_03050 PF00885 6,7-dimethyl-8-ribityllumazine synthase HPY06_03055 PF01029 NusB family HPY06_03060 PF02769 AIR synthase related protein, C-terminal domain HPY06_03060 PF00586 AIR synthase related protein, N-terminal domain HPY06_03065 PF04608 Phosphatidylglycerophosphatase A HPY06_03070 PF11944 Protein of unknown function (DUF3461) HPY06_03075 PF08335 GlnD PII-uridylyltransferase HPY06_03075 PF01966 HD domain HPY06_03075 PF01909 Nucleotidyltransferase domain HPY06_03080 PF00557 Metallopeptidase family M24 HPY06_03085 PF00318 Ribosomal protein S2 HPY06_03090 PF00889 Elongation factor TS HPY06_03095 PF00696 Amino acid kinase family HPY06_03100 PF01765 Ribosome recycling factor HPY06_03105 PF01255 Putative undecaprenyl diphosphate synthase HPY06_03115 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HPY06_03115 PF13288 DXP reductoisomerase C-terminal domain HPY06_03115 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HPY06_03120 PF02163 Peptidase family M50 HPY06_03120 PF17820 PDZ domain HPY06_03125 PF07244 Surface antigen variable number repeat HPY06_03125 PF01103 Surface antigen HPY06_03130 PF03938 Outer membrane protein (OmpH-like) HPY06_03135 PF00132 Bacterial transferase hexapeptide (six repeats) HPY06_03135 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HPY06_03140 PF07977 FabA-like domain HPY06_03145 PF00132 Bacterial transferase hexapeptide (six repeats) HPY06_03145 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HPY06_03150 PF02684 Lipid-A-disaccharide synthetase HPY06_03155 PF01351 Ribonuclease HII HPY06_03160 PF07733 Bacterial DNA polymerase III alpha NTPase domain HPY06_03160 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HPY06_03160 PF01336 OB-fold nucleic acid binding domain HPY06_03160 PF02811 PHP domain HPY06_03160 PF14579 Helix-hairpin-helix motif HPY06_03165 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HPY06_03170 PF14706 Transposase DNA-binding HPY06_03170 PF01609 Transposase DDE domain HPY06_03170 PF02281 Transposase Tn5 dimerisation domain HPY06_03175 PF11734 TilS substrate C-terminal domain HPY06_03175 PF01171 PP-loop family HPY06_03175 PF09179 TilS substrate binding domain HPY06_03180 PF00034 Cytochrome c HPY06_03185 PF05870 Phenolic acid decarboxylase (PAD) HPY06_03190 PF00543 Nitrogen regulatory protein P-II HPY06_03195 PF03372 Endonuclease/Exonuclease/phosphatase family HPY06_03200 PF01464 Transglycosylase SLT domain HPY06_03200 PF01476 LysM domain HPY06_03205 PF00753 Metallo-beta-lactamase superfamily HPY06_03205 PF16123 Hydroxyacylglutathione hydrolase C-terminus HPY06_03210 PF08241 Methyltransferase domain HPY06_03215 PF00075 RNase H HPY06_03220 PF00929 Exonuclease HPY06_03230 PF02770 Acyl-CoA dehydrogenase, middle domain HPY06_03230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY06_03230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY06_03230 PF09317 Domain of unknown function (DUF1974) HPY06_03235 PF13580 SIS domain HPY06_03240 PF13230 Glutamine amidotransferases class-II HPY06_03245 PF00551 Formyl transferase HPY06_03250 PF00586 AIR synthase related protein, N-terminal domain HPY06_03250 PF02769 AIR synthase related protein, C-terminal domain HPY06_03260 PF00990 Diguanylate cyclase, GGDEF domain HPY06_03260 PF08448 PAS fold HPY06_03265 PF00849 RNA pseudouridylate synthase HPY06_03265 PF01479 S4 domain HPY06_03270 PF01713 Smr domain HPY06_03290 PF02838 Glycosyl hydrolase family 20, domain 2 HPY06_03290 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY06_03290 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HPY06_03290 PF03173 Putative carbohydrate binding domain HPY06_03300 PF00403 Heavy-metal-associated domain HPY06_03305 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY06_03310 PF00691 OmpA family HPY06_03310 PF01389 OmpA-like transmembrane domain HPY06_03320 PF07715 TonB-dependent Receptor Plug Domain HPY06_03325 PF08021 Siderophore-interacting FAD-binding domain HPY06_03325 PF04954 Siderophore-interacting protein HPY06_03330 PF00668 Condensation domain HPY06_03330 PF08242 Methyltransferase domain HPY06_03330 PF00501 AMP-binding enzyme HPY06_03330 PF00550 Phosphopantetheine attachment site HPY06_03365 PF00072 Response regulator receiver domain HPY06_03365 PF01584 CheW-like domain HPY06_03370 PF01739 CheR methyltransferase, SAM binding domain HPY06_03370 PF03705 CheR methyltransferase, all-alpha domain HPY06_03375 PF00460 Flagella basal body rod protein HPY06_03380 PF00460 Flagella basal body rod protein HPY06_03380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY06_03385 PF03963 Flagellar hook capping protein - N-terminal region HPY06_03385 PF13860 FlgD Ig-like domain HPY06_03385 PF13861 FlgD Tudor-like domain HPY06_03390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY06_03390 PF00460 Flagella basal body rod protein HPY06_03390 PF07559 Flagellar basal body protein FlaE HPY06_03395 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY06_03395 PF00460 Flagella basal body rod protein HPY06_03400 PF00460 Flagella basal body rod protein HPY06_03400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY06_03405 PF02107 Flagellar L-ring protein HPY06_03410 PF02119 Flagellar P-ring protein HPY06_03415 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HPY06_03415 PF10135 Rod binding protein HPY06_03420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY06_03420 PF07196 Flagellin hook IN motif HPY06_03430 PF07196 Flagellin hook IN motif HPY06_03430 PF00669 Bacterial flagellin N-terminal helical region HPY06_03430 PF00700 Bacterial flagellin C-terminal helical region HPY06_03435 PF07196 Flagellin hook IN motif HPY06_03435 PF00700 Bacterial flagellin C-terminal helical region HPY06_03435 PF00669 Bacterial flagellin N-terminal helical region HPY06_03520 PF01926 50S ribosome-binding GTPase HPY06_03520 PF06071 Protein of unknown function (DUF933) HPY06_03525 PF01195 Peptidyl-tRNA hydrolase HPY06_03530 PF14572 Phosphoribosyl synthetase-associated domain HPY06_03530 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HPY06_03535 PF08544 GHMP kinases C terminal HPY06_03535 PF00288 GHMP kinases N terminal domain HPY06_03540 PF03550 Outer membrane lipoprotein LolB HPY06_03545 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HPY06_03545 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HPY06_03545 PF01488 Shikimate / quinate 5-dehydrogenase HPY06_03550 PF00472 RF-1 domain HPY06_03550 PF03462 PCRF domain HPY06_03555 PF17827 PrmC N-terminal domain HPY06_03555 PF13847 Methyltransferase domain HPY06_03560 PF04247 Invasion gene expression up-regulator, SirB HPY06_03565 PF13369 Transglutaminase-like superfamily HPY06_03570 PF00793 DAHP synthetase I family HPY06_03575 PF00149 Calcineurin-like phosphoesterase HPY06_03575 PF02872 5'-nucleotidase, C-terminal domain HPY06_03580 PF04073 Aminoacyl-tRNA editing domain HPY06_03585 PF00860 Permease family HPY06_03600 PF03358 NADPH-dependent FMN reductase HPY06_03605 PF03960 ArsC family HPY06_03610 PF13181 Tetratricopeptide repeat HPY06_03610 PF01435 Peptidase family M48 HPY06_03620 PF01594 AI-2E family transporter HPY06_03625 PF00672 HAMP domain HPY06_03625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_03625 PF02743 Cache domain HPY06_03630 PF00578 AhpC/TSA family HPY06_03640 PF00701 Dihydrodipicolinate synthetase family HPY06_03645 PF06804 NlpB/DapX lipoprotein HPY06_03650 PF02281 Transposase Tn5 dimerisation domain HPY06_03650 PF14706 Transposase DNA-binding HPY06_03650 PF01609 Transposase DDE domain HPY06_03660 PF02557 D-alanyl-D-alanine carboxypeptidase HPY06_03665 PF01546 Peptidase family M20/M25/M40 HPY06_03665 PF07687 Peptidase dimerisation domain HPY06_03670 PF03960 ArsC family HPY06_03685 PF11143 Protein of unknown function (DUF2919) HPY06_03690 PF04261 Dyp-type peroxidase family HPY06_03695 PF00700 Bacterial flagellin C-terminal helical region HPY06_03695 PF07196 Flagellin hook IN motif HPY06_03695 PF00669 Bacterial flagellin N-terminal helical region HPY06_03700 PF00700 Bacterial flagellin C-terminal helical region HPY06_03700 PF07196 Flagellin hook IN motif HPY06_03700 PF00669 Bacterial flagellin N-terminal helical region HPY06_03705 PF07196 Flagellin hook IN motif HPY06_03705 PF00700 Bacterial flagellin C-terminal helical region HPY06_03705 PF00669 Bacterial flagellin N-terminal helical region HPY06_03710 PF03646 FlaG protein HPY06_03715 PF02465 Flagellar hook-associated protein 2 N-terminus HPY06_03715 PF07196 Flagellin hook IN motif HPY06_03715 PF07195 Flagellar hook-associated protein 2 C-terminus HPY06_03725 PF02561 Flagellar protein FliS HPY06_03730 PF02954 Bacterial regulatory protein, Fis family HPY06_03730 PF00158 Sigma-54 interaction domain HPY06_03730 PF06490 Flagellar regulatory protein FleQ HPY06_03735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_03735 PF00989 PAS fold HPY06_03735 PF08447 PAS fold HPY06_03735 PF13426 PAS domain HPY06_03735 PF00512 His Kinase A (phospho-acceptor) domain HPY06_03735 PF13493 Domain of unknown function (DUF4118) HPY06_03740 PF02954 Bacterial regulatory protein, Fis family HPY06_03740 PF00158 Sigma-54 interaction domain HPY06_03740 PF00072 Response regulator receiver domain HPY06_03745 PF02049 Flagellar hook-basal body complex protein FliE HPY06_03750 PF08345 Flagellar M-ring protein C-terminal HPY06_03750 PF01514 Secretory protein of YscJ/FliF family HPY06_03755 PF14842 FliG N-terminal domain HPY06_03755 PF14841 FliG middle domain HPY06_03755 PF01706 FliG C-terminal domain HPY06_03765 PF18269 T3SS EscN ATPase C-terminal domain HPY06_03765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY06_03785 PF03748 Flagellar basal body-associated protein FliL HPY06_03790 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY06_03790 PF02154 Flagellar motor switch protein FliM HPY06_03795 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY06_03800 PF04347 Flagellar biosynthesis protein, FliO HPY06_03805 PF00813 FliP family HPY06_03810 PF01313 Bacterial export proteins, family 3 HPY06_03815 PF01311 Bacterial export proteins, family 1 HPY06_03820 PF01312 FlhB HrpN YscU SpaS Family HPY06_03825 PF01713 Smr domain HPY06_03830 PF05175 Methyltransferase small domain HPY06_03835 PF01264 Chorismate synthase HPY06_03840 PF03458 UPF0126 domain HPY06_03845 PF04315 Elongation factor P hydroxylase HPY06_03850 PF08891 YfcL protein HPY06_03855 PF03358 NADPH-dependent FMN reductase HPY06_03860 PF01266 FAD dependent oxidoreductase HPY06_03860 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HPY06_03865 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY06_03865 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY06_03870 PF11890 Domain of unknown function (DUF3410) HPY06_03870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY06_03870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY06_03875 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY06_03875 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY06_03880 PF01475 Ferric uptake regulator family HPY06_03890 PF03466 LysR substrate binding domain HPY06_03890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_03895 PF03788 LrgA family HPY06_03900 PF04172 LrgB-like family HPY06_03905 PF00258 Flavodoxin HPY06_03915 PF12697 Alpha/beta hydrolase family HPY06_03920 PF17206 SeqA protein N-terminal domain HPY06_03920 PF03925 SeqA protein C-terminal domain HPY06_03925 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY06_03925 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY06_03925 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY06_03925 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY06_03935 PF01784 NIF3 (NGG1p interacting factor 3) HPY06_03940 PF00285 Citrate synthase, C-terminal domain HPY06_03945 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY06_03950 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY06_03955 PF02910 Fumarate reductase flavoprotein C-term HPY06_03955 PF00890 FAD binding domain HPY06_03960 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY06_03965 PF00676 Dehydrogenase E1 component HPY06_03965 PF16078 2-oxoglutarate dehydrogenase N-terminus HPY06_03965 PF16870 2-oxoglutarate dehydrogenase C-terminal HPY06_03965 PF02779 Transketolase, pyrimidine binding domain HPY06_03970 PF00364 Biotin-requiring enzyme HPY06_03970 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY06_03970 PF02817 e3 binding domain HPY06_03975 PF08442 ATP-grasp domain HPY06_03975 PF00549 CoA-ligase HPY06_03980 PF02629 CoA binding domain HPY06_03980 PF00549 CoA-ligase HPY06_03985 PF00950 ABC 3 transport family HPY06_03990 PF00005 ABC transporter HPY06_03995 PF01297 Zinc-uptake complex component A periplasmic HPY06_04000 PF02311 AraC-like ligand binding domain HPY06_04000 PF12833 Helix-turn-helix domain HPY06_04005 PF04023 FeoA domain HPY06_04010 PF07664 Ferrous iron transport protein B C terminus HPY06_04010 PF07670 Nucleoside recognition HPY06_04010 PF02421 Ferrous iron transport protein B HPY06_04025 PF05746 DALR anticodon binding domain HPY06_04025 PF03485 Arginyl tRNA synthetase N terminal domain HPY06_04025 PF00750 tRNA synthetases class I (R) HPY06_04035 PF05193 Peptidase M16 inactive domain HPY06_04035 PF00675 Insulinase (Peptidase family M16) HPY06_04040 PF00300 Histidine phosphatase superfamily (branch 1) HPY06_04045 PF00771 FHIPEP family HPY06_04050 PF00448 SRP54-type protein, GTPase domain HPY06_04055 PF10609 NUBPL iron-transfer P-loop NTPase HPY06_04060 PF04545 Sigma-70, region 4 HPY06_04060 PF04539 Sigma-70 region 3 HPY06_04060 PF04542 Sigma-70 region 2 HPY06_04065 PF00072 Response regulator receiver domain HPY06_04070 PF04344 Chemotaxis phosphatase, CheZ HPY06_04075 PF01627 Hpt domain HPY06_04075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_04075 PF02895 Signal transducing histidine kinase, homodimeric domain HPY06_04075 PF01584 CheW-like domain HPY06_04075 PF00072 Response regulator receiver domain HPY06_04080 PF00072 Response regulator receiver domain HPY06_04080 PF01339 CheB methylesterase HPY06_04085 PF13614 AAA domain HPY06_04095 PF01584 CheW-like domain HPY06_04105 PF00005 ABC transporter HPY06_04110 PF03379 CcmB protein HPY06_04115 PF01578 Cytochrome C assembly protein HPY06_04120 PF04995 Heme exporter protein D (CcmD) HPY06_04125 PF03100 CcmE HPY06_04130 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HPY06_04130 PF01578 Cytochrome C assembly protein HPY06_04135 PF08534 Redoxin HPY06_04140 PF03918 Cytochrome C biogenesis protein HPY06_04150 PF04333 MlaA lipoprotein HPY06_04165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY06_04165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY06_04170 PF00462 Glutaredoxin HPY06_04175 PF01751 Toprim domain HPY06_04175 PF01131 DNA topoisomerase HPY06_04180 PF00850 Histone deacetylase domain HPY06_04195 PF11893 Domain of unknown function (DUF3413) HPY06_04195 PF00884 Sulfatase HPY06_04200 PF07208 Protein of unknown function (DUF1414) HPY06_04205 PF04245 37-kD nucleoid-associated bacterial protein HPY06_04215 PF03553 Na+/H+ antiporter family HPY06_04220 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY06_04220 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY06_04225 PF01914 MarC family integral membrane protein HPY06_04230 PF00465 Iron-containing alcohol dehydrogenase HPY06_04230 PF00171 Aldehyde dehydrogenase family HPY06_04240 PF01740 STAS domain HPY06_04240 PF00916 Sulfate permease family HPY06_04245 PF00575 S1 RNA binding domain HPY06_04245 PF12111 Polyribonucleotide phosphorylase C terminal HPY06_04245 PF10150 Ribonuclease E/G family HPY06_04250 PF01479 S4 domain HPY06_04250 PF00849 RNA pseudouridylate synthase HPY06_04255 PF02545 Maf-like protein HPY06_04260 PF02620 Large ribosomal RNA subunit accumulation protein YceD HPY06_04265 PF01783 Ribosomal L32p protein family HPY06_04270 PF02504 Fatty acid synthesis protein HPY06_04275 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY06_04275 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY06_04280 PF00698 Acyl transferase domain HPY06_04290 PF00550 Phosphopantetheine attachment site HPY06_04295 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY06_04295 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY06_04300 PF01063 Amino-transferase class IV HPY06_04305 PF02618 YceG-like family HPY06_04310 PF02223 Thymidylate kinase HPY06_04315 PF09115 DNA polymerase III, delta subunit, C terminal HPY06_04320 PF01026 TatD related DNase HPY06_04325 PF00367 phosphotransferase system, EIIB HPY06_04325 PF02378 Phosphotransferase system, EIIC HPY06_04335 PF00209 Sodium:neurotransmitter symporter family HPY06_04350 PF01734 Patatin-like phospholipase HPY06_04355 PF02887 Pyruvate kinase, alpha/beta domain HPY06_04355 PF00224 Pyruvate kinase, barrel domain HPY06_04360 PF00480 ROK family HPY06_04365 PF00072 Response regulator receiver domain HPY06_04365 PF01584 CheW-like domain HPY06_04380 PF13847 Methyltransferase domain HPY06_04390 PF01263 Aldose 1-epimerase HPY06_04395 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY06_04395 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY06_04400 PF01641 SelR domain HPY06_04410 PF07023 Protein of unknown function (DUF1315) HPY06_04415 PF00710 Asparaginase, N-terminal HPY06_04415 PF17763 Glutaminase/Asparaginase C-terminal domain HPY06_04420 PF01343 Peptidase family S49 HPY06_04425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY06_04425 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY06_04430 PF01842 ACT domain HPY06_04430 PF00551 Formyl transferase HPY06_04440 PF13307 Helicase C-terminal domain HPY06_04440 PF04851 Type III restriction enzyme, res subunit HPY06_04445 PF00814 Glycoprotease family HPY06_04460 PF00561 alpha/beta hydrolase fold HPY06_04465 PF13193 AMP-binding enzyme C-terminal domain HPY06_04465 PF00501 AMP-binding enzyme HPY06_04470 PF00570 HRDC domain HPY06_04470 PF01612 3'-5' exonuclease HPY06_04475 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HPY06_04475 PF01694 Rhomboid family HPY06_04485 PF01966 HD domain HPY06_04485 PF13286 Phosphohydrolase-associated domain HPY06_04495 PF00155 Aminotransferase class I and II HPY06_04500 PF00425 chorismate binding enzyme HPY06_04505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY06_04505 PF16582 Middle domain of thiamine pyrophosphate HPY06_04505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY06_04510 PF12697 Alpha/beta hydrolase family HPY06_04515 PF00378 Enoyl-CoA hydratase/isomerase HPY06_04520 PF13378 Enolase C-terminal domain-like HPY06_04525 PF00501 AMP-binding enzyme HPY06_04525 PF13193 AMP-binding enzyme C-terminal domain HPY06_04530 PF03594 Benzoate membrane transport protein HPY06_04535 PF07690 Major Facilitator Superfamily HPY06_04555 PF04170 NlpE N-terminal domain HPY06_04560 PF03776 Septum formation topological specificity factor MinE HPY06_04565 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY06_04570 PF05209 Septum formation inhibitor MinC, N-terminal domain HPY06_04570 PF03775 Septum formation inhibitor MinC, C-terminal domain HPY06_04575 PF05166 YcgL domain HPY06_04580 PF13406 Transglycosylase SLT domain HPY06_04585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_04585 PF03466 LysR substrate binding domain HPY06_04590 PF07670 Nucleoside recognition HPY06_04590 PF07662 Na+ dependent nucleoside transporter C-terminus HPY06_04590 PF01773 Na+ dependent nucleoside transporter N-terminus HPY06_04595 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY06_04600 PF01568 Molydopterin dinucleotide binding domain HPY06_04600 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY06_04600 PF00384 Molybdopterin oxidoreductase HPY06_04610 PF03466 LysR substrate binding domain HPY06_04610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_04615 PF01494 FAD binding domain HPY06_04620 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HPY06_04630 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HPY06_04630 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HPY06_04675 PF00990 Diguanylate cyclase, GGDEF domain HPY06_04675 PF00563 EAL domain HPY06_04675 PF13188 PAS domain HPY06_04675 PF03707 Bacterial signalling protein N terminal repeat HPY06_04685 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HPY06_04690 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY06_04695 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HPY06_04700 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY06_04705 PF02954 Bacterial regulatory protein, Fis family HPY06_04705 PF00072 Response regulator receiver domain HPY06_04705 PF00158 Sigma-54 interaction domain HPY06_04710 PF00512 His Kinase A (phospho-acceptor) domain HPY06_04710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_04720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY06_04720 PF05697 Bacterial trigger factor protein (TF) HPY06_04720 PF05698 Bacterial trigger factor protein (TF) C-terminus HPY06_04725 PF00574 Clp protease HPY06_04730 PF07724 AAA domain (Cdc48 subfamily) HPY06_04730 PF10431 C-terminal, D2-small domain, of ClpB protein HPY06_04730 PF06689 ClpX C4-type zinc finger HPY06_04735 PF02190 ATP-dependent protease La (LON) substrate-binding domain HPY06_04735 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY06_04735 PF00004 ATPase family associated with various cellular activities (AAA) HPY06_04740 PF00216 Bacterial DNA-binding protein HPY06_04745 PF13145 PPIC-type PPIASE domain HPY06_04755 PF02224 Cytidylate kinase HPY06_04760 PF00575 S1 RNA binding domain HPY06_04765 PF00216 Bacterial DNA-binding protein HPY06_04770 PF06305 Lipopolysaccharide assembly protein A domain HPY06_04775 PF18073 Rubredoxin metal binding domain HPY06_04780 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY06_04785 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HPY06_04795 PF03466 LysR substrate binding domain HPY06_04795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_04805 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY06_04805 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY06_04810 PF01037 Lrp/AsnC ligand binding domain HPY06_04815 PF17854 FtsK alpha domain HPY06_04815 PF01580 FtsK/SpoIIIE family HPY06_04815 PF09397 Ftsk gamma domain HPY06_04815 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HPY06_04820 PF02600 Disulfide bond formation protein DsbB HPY06_04825 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HPY06_04830 PF00392 Bacterial regulatory proteins, gntR family HPY06_04830 PF07840 FadR C-terminal domain HPY06_04840 PF00672 HAMP domain HPY06_04840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_04845 PF01230 HIT domain HPY06_04860 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HPY06_04860 PF13036 Peptidoglycan-synthase activator LpoB HPY06_04870 PF05728 Uncharacterised protein family (UPF0227) HPY06_04875 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY06_04885 PF07968 Leukocidin/Hemolysin toxin family HPY06_04885 PF16458 Beta-prism lectin HPY06_04885 PF12563 Hemolytic toxin N terminal HPY06_04890 PF16458 Beta-prism lectin HPY06_04890 PF07968 Leukocidin/Hemolysin toxin family HPY06_04890 PF12563 Hemolytic toxin N terminal HPY06_04900 PF02559 CarD-like/TRCF domain HPY06_04900 PF00270 DEAD/DEAH box helicase HPY06_04900 PF00271 Helicase conserved C-terminal domain HPY06_04900 PF03461 TRCF domain HPY06_04900 PF17757 UvrB interaction domain HPY06_04910 PF02687 FtsX-like permease family HPY06_04910 PF12704 MacB-like periplasmic core domain HPY06_04915 PF00005 ABC transporter HPY06_04920 PF02687 FtsX-like permease family HPY06_04920 PF12704 MacB-like periplasmic core domain HPY06_04930 PF00753 Metallo-beta-lactamase superfamily HPY06_04930 PF13567 Domain of unknown function (DUF4131) HPY06_04930 PF03772 Competence protein HPY06_04935 PF00005 ABC transporter HPY06_04935 PF00664 ABC transporter transmembrane region HPY06_04940 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HPY06_04945 PF03966 Trm112p-like protein HPY06_04950 PF02348 Cytidylyltransferase HPY06_04955 PF04293 SpoVR like protein HPY06_04960 PF04285 Protein of unknown function (DUF444) HPY06_04965 PF06798 PrkA serine protein kinase C-terminal domain HPY06_04965 PF08298 PrkA AAA domain HPY06_04970 PF03887 YfbU domain HPY06_04980 PF04055 Radical SAM superfamily HPY06_04985 PF00672 HAMP domain HPY06_04985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_04985 PF12729 Four helix bundle sensory module for signal transduction HPY06_04995 PF01228 Glycine radical HPY06_04995 PF02901 Pyruvate formate lyase-like HPY06_05005 PF00005 ABC transporter HPY06_05010 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY06_05015 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_05020 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_05025 PF03372 Endonuclease/Exonuclease/phosphatase family HPY06_05030 PF10689 Protein of unknown function (DUF2496) HPY06_05035 PF07445 Primosomal replication protein priC HPY06_05040 PF01925 Sulfite exporter TauE/SafE HPY06_05045 PF13307 Helicase C-terminal domain HPY06_05045 PF06733 DEAD_2 HPY06_05055 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY06_05060 PF02810 SEC-C motif HPY06_05065 PF08668 HDOD domain HPY06_05065 PF00563 EAL domain HPY06_05070 PF00149 Calcineurin-like phosphoesterase HPY06_05075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY06_05080 PF09190 DALR domain HPY06_05080 PF01406 tRNA synthetases class I (C) catalytic domain HPY06_05085 PF02075 Crossover junction endodeoxyribonuclease RuvC HPY06_05090 PF07499 RuvA, C-terminal domain HPY06_05090 PF01330 RuvA N terminal domain HPY06_05095 PF05496 Holliday junction DNA helicase RuvB P-loop domain HPY06_05095 PF05491 RuvB C-terminal winged helix domain HPY06_05095 PF17864 RuvB AAA lid domain HPY06_05100 PF01654 Cytochrome bd terminal oxidase subunit I HPY06_05105 PF02322 Cytochrome bd terminal oxidase subunit II HPY06_05110 PF08173 Membrane bound YbgT-like protein HPY06_05115 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HPY06_05120 PF03061 Thioesterase superfamily HPY06_05125 PF01618 MotA/TolQ/ExbB proton channel family HPY06_05130 PF02472 Biopolymer transport protein ExbD/TolR HPY06_05140 PF07676 WD40-like Beta Propeller Repeat HPY06_05140 PF04052 TolB amino-terminal domain HPY06_05145 PF00691 OmpA family HPY06_05155 PF02445 Quinolinate synthetase A protein HPY06_05165 PF00072 Response regulator receiver domain HPY06_05165 PF09308 LuxQ, periplasmic HPY06_05165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_05165 PF00512 His Kinase A (phospho-acceptor) domain HPY06_05170 PF06610 L-alanine exporter HPY06_05175 PF01238 Phosphomannose isomerase type I HPY06_05180 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY06_05180 PF02378 Phosphotransferase system, EIIC HPY06_05180 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY06_05185 PF12833 Helix-turn-helix domain HPY06_05195 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY06_05215 PF00171 Aldehyde dehydrogenase family HPY06_05220 PF01590 GAF domain HPY06_05220 PF02954 Bacterial regulatory protein, Fis family HPY06_05220 PF00158 Sigma-54 interaction domain HPY06_05225 PF09905 DNA-binding protein VF530 HPY06_05235 PF03441 FAD binding domain of DNA photolyase HPY06_05235 PF00875 DNA photolyase HPY06_05260 PF13088 BNR repeat-like domain HPY06_05260 PF09264 Vibrio cholerae sialidase, lectin insertion HPY06_05265 PF01979 Amidohydrolase family HPY06_05270 PF00480 ROK family HPY06_05275 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase HPY06_05280 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY06_05285 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HPY06_05290 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY06_05295 PF00701 Dihydrodipicolinate synthetase family HPY06_05300 PF01380 SIS domain HPY06_05300 PF01418 Helix-turn-helix domain, rpiR family HPY06_05305 PF01344 Kelch motif HPY06_05310 PF07646 Kelch motif HPY06_05320 PF11999 Protein of unknown function (DUF3494) HPY06_05320 PF02368 Bacterial Ig-like domain (group 2) HPY06_05345 PF00561 alpha/beta hydrolase fold HPY06_05350 PF03347 Vibrio thermostable direct hemolysin HPY06_05355 PF17291 N-terminal domain of M60-like peptidases HPY06_05355 PF13402 Peptidase M60, enhancin and enhancin-like HPY06_05355 PF13322 Domain of unknown function (DUF4092) HPY06_05460 PF00771 FHIPEP family HPY06_05465 PF01312 FlhB HrpN YscU SpaS Family HPY06_05470 PF00691 OmpA family HPY06_05495 PF00486 Transcriptional regulatory protein, C terminal HPY06_05505 PF00813 FliP family HPY06_05520 PF03958 Bacterial type II/III secretion system short domain HPY06_05520 PF00263 Bacterial type II and III secretion system protein HPY06_05525 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY06_05525 PF18269 T3SS EscN ATPase C-terminal domain HPY06_05525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY06_05570 PF09020 YopE, N terminal HPY06_05570 PF03545 Yersinia virulence determinant (YopE) HPY06_05585 PF13356 Arm DNA-binding domain HPY06_05585 PF00589 Phage integrase family HPY06_05595 PF00873 AcrB/AcrD/AcrF family HPY06_05600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY06_05610 PF02470 MlaD protein HPY06_05615 PF04403 Paraquat-inducible protein A HPY06_05620 PF00440 Bacterial regulatory proteins, tetR family HPY06_05620 PF08362 YcdC-like protein, C-terminal region HPY06_05625 PF00171 Aldehyde dehydrogenase family HPY06_05630 PF07383 Protein of unknown function (DUF1496) HPY06_05640 PF16295 Tetracyclin repressor-like, C-terminal domain HPY06_05640 PF00440 Bacterial regulatory proteins, tetR family HPY06_05645 PF02770 Acyl-CoA dehydrogenase, middle domain HPY06_05645 PF09317 Domain of unknown function (DUF1974) HPY06_05645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY06_05645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY06_05650 PF07055 Enoyl reductase FAD binding domain HPY06_05650 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY06_05650 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY06_05655 PF01176 Translation initiation factor 1A / IF-1 HPY06_05660 PF04376 Arginine-tRNA-protein transferase, N terminus HPY06_05660 PF04377 Arginine-tRNA-protein transferase, C terminus HPY06_05665 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HPY06_05670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY06_05675 PF10692 Protein of unknown function (DUF2498) HPY06_05680 PF08272 Topoisomerase I zinc-ribbon-like HPY06_05680 PF01751 Toprim domain HPY06_05680 PF01131 DNA topoisomerase HPY06_05680 PF01396 Topoisomerase DNA binding C4 zinc finger HPY06_05685 PF00483 Nucleotidyl transferase HPY06_05690 PF00534 Glycosyl transferases group 1 HPY06_05690 PF08323 Starch synthase catalytic domain HPY06_05710 PF04993 TfoX N-terminal domain HPY06_05710 PF04994 TfoX C-terminal domain HPY06_05715 PF00356 Bacterial regulatory proteins, lacI family HPY06_05720 PF02613 Nitrate reductase delta subunit HPY06_05725 PF00072 Response regulator receiver domain HPY06_05725 PF00486 Transcriptional regulatory protein, C terminal HPY06_05730 PF02698 DUF218 domain HPY06_05735 PF13847 Methyltransferase domain HPY06_05740 PF17193 MukF C-terminal domain HPY06_05740 PF17192 MukF middle domain HPY06_05740 PF03882 MukF winged-helix domain HPY06_05745 PF04288 MukE-like family HPY06_05750 PF04310 MukB N-terminal HPY06_05750 PF16330 MukB hinge domain HPY06_05755 PF01037 Lrp/AsnC ligand binding domain HPY06_05760 PF01810 LysE type translocator HPY06_05765 PF08497 Radical SAM N-terminal HPY06_05765 PF11842 Domain of unknown function (DUF3362) HPY06_05765 PF04055 Radical SAM superfamily HPY06_05770 PF08448 PAS fold HPY06_05770 PF00563 EAL domain HPY06_05770 PF00990 Diguanylate cyclase, GGDEF domain HPY06_05770 PF08447 PAS fold HPY06_05775 PF00675 Insulinase (Peptidase family M16) HPY06_05775 PF05193 Peptidase M16 inactive domain HPY06_05790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_05790 PF03466 LysR substrate binding domain HPY06_05795 PF08267 Cobalamin-independent synthase, N-terminal domain HPY06_05795 PF01717 Cobalamin-independent synthase, Catalytic domain HPY06_05805 PF03795 YCII-related domain HPY06_05810 PF03061 Thioesterase superfamily HPY06_05815 PF04279 Intracellular septation protein A HPY06_05825 PF02698 DUF218 domain HPY06_05830 PF01370 NAD dependent epimerase/dehydratase family HPY06_05840 PF01226 Formate/nitrite transporter HPY06_05845 PF06796 Periplasmic nitrate reductase protein NapE HPY06_05850 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY06_05855 PF00384 Molybdopterin oxidoreductase HPY06_05855 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY06_05855 PF01568 Molydopterin dinucleotide binding domain HPY06_05875 PF02833 DHHA2 domain HPY06_05875 PF01368 DHH family HPY06_05895 PF00005 ABC transporter HPY06_05900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY06_05900 PF00005 ABC transporter HPY06_05905 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_05905 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY06_05910 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_05915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY06_05920 PF00158 Sigma-54 interaction domain HPY06_05920 PF02954 Bacterial regulatory protein, Fis family HPY06_05925 PF04012 PspA/IM30 family HPY06_05940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY06_05940 PF00529 HlyD membrane-fusion protein of T1SS HPY06_05945 PF13533 Biotin-lipoyl like HPY06_05950 PF00873 AcrB/AcrD/AcrF family HPY06_05955 PF03352 Methyladenine glycosylase HPY06_05960 PF00582 Universal stress protein family HPY06_05965 PF00999 Sodium/hydrogen exchanger family HPY06_05965 PF02080 TrkA-C domain HPY06_05965 PF02254 TrkA-N domain HPY06_05970 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY06_05975 PF13091 PLD-like domain HPY06_05975 PF13396 Phospholipase_D-nuclease N-terminal HPY06_05980 PF00209 Sodium:neurotransmitter symporter family HPY06_05985 PF00849 RNA pseudouridylate synthase HPY06_05990 PF01066 CDP-alcohol phosphatidyltransferase HPY06_05995 PF00005 ABC transporter HPY06_06000 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_06005 PF13416 Bacterial extracellular solute-binding protein HPY06_06015 PF06945 Protein of unknown function (DUF1289) HPY06_06025 PF03222 Tryptophan/tyrosine permease family HPY06_06035 PF03448 MgtE intracellular N domain HPY06_06035 PF01769 Divalent cation transporter HPY06_06035 PF00571 CBS domain HPY06_06040 PF09308 LuxQ, periplasmic HPY06_06040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_06040 PF00512 His Kinase A (phospho-acceptor) domain HPY06_06040 PF00072 Response regulator receiver domain HPY06_06045 PF00990 Diguanylate cyclase, GGDEF domain HPY06_06045 PF00563 EAL domain HPY06_06045 PF03707 Bacterial signalling protein N terminal repeat HPY06_06055 PF01752 Collagenase HPY06_06055 PF04151 Bacterial pre-peptidase C-terminal domain HPY06_06055 PF08453 Peptidase family M9 N-terminal HPY06_06065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY06_06065 PF12793 Sugar transport-related sRNA regulator N-term HPY06_06080 PF09009 Exotoxin A catalytic HPY06_06080 PF09101 Exotoxin A binding HPY06_06080 PF09102 Exotoxin A, targeting HPY06_06090 PF00672 HAMP domain HPY06_06090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_06090 PF12729 Four helix bundle sensory module for signal transduction HPY06_06100 PF00990 Diguanylate cyclase, GGDEF domain HPY06_06100 PF01590 GAF domain HPY06_06100 PF00563 EAL domain HPY06_06100 PF00360 Phytochrome region HPY06_06105 PF01386 Ribosomal L25p family HPY06_06110 PF11808 Phosphate regulon sensor protein PhoR HPY06_06110 PF00989 PAS fold HPY06_06110 PF00512 His Kinase A (phospho-acceptor) domain HPY06_06110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_06115 PF00072 Response regulator receiver domain HPY06_06115 PF00486 Transcriptional regulatory protein, C terminal HPY06_06125 PF00271 Helicase conserved C-terminal domain HPY06_06125 PF04851 Type III restriction enzyme, res subunit HPY06_06130 PF01479 S4 domain HPY06_06130 PF00849 RNA pseudouridylate synthase HPY06_06135 PF07690 Major Facilitator Superfamily HPY06_06145 PF11066 Protein of unknown function (DUF2867) HPY06_06145 PF13460 NAD(P)H-binding HPY06_06150 PF01554 MatE HPY06_06155 PF00005 ABC transporter HPY06_06170 PF06965 Na+/H+ antiporter 1 HPY06_06175 PF00202 Aminotransferase class-III HPY06_06180 PF16653 Saccharopine dehydrogenase C-terminal domain HPY06_06180 PF03435 Saccharopine dehydrogenase NADP binding domain HPY06_06190 PF05736 OprF membrane domain HPY06_06190 PF00691 OmpA family HPY06_06195 PF02321 Outer membrane efflux protein HPY06_06215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_06215 PF03466 LysR substrate binding domain HPY06_06225 PF01863 Protein of unknown function DUF45 HPY06_06230 PF05971 RNA methyltransferase HPY06_06245 PF04204 Homoserine O-succinyltransferase HPY06_06265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY06_06280 PF17203 Single cache domain 3 HPY06_06280 PF00989 PAS fold HPY06_06280 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HPY06_06280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_06285 PF00072 Response regulator receiver domain HPY06_06285 PF12431 Transcriptional regulator HPY06_06295 PF00072 Response regulator receiver domain HPY06_06295 PF01584 CheW-like domain HPY06_06315 PF00990 Diguanylate cyclase, GGDEF domain HPY06_06315 PF00072 Response regulator receiver domain HPY06_06340 PF07690 Major Facilitator Superfamily HPY06_06345 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HPY06_06345 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HPY06_06350 PF10509 Galactokinase galactose-binding signature HPY06_06350 PF08544 GHMP kinases C terminal HPY06_06350 PF00288 GHMP kinases N terminal domain HPY06_06355 PF01263 Aldose 1-epimerase HPY06_06365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY06_06365 PF00205 Thiamine pyrophosphate enzyme, central domain HPY06_06365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY06_06370 PF03306 Alpha-acetolactate decarboxylase HPY06_06375 PF03466 LysR substrate binding domain HPY06_06375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_06380 PF13322 Domain of unknown function (DUF4092) HPY06_06380 PF17291 N-terminal domain of M60-like peptidases HPY06_06380 PF13402 Peptidase M60, enhancin and enhancin-like HPY06_06390 PF00199 Catalase HPY06_06390 PF06628 Catalase-related immune-responsive HPY06_06400 PF00080 Copper/zinc superoxide dismutase (SODC) HPY06_06405 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) HPY06_06410 PF00361 Proton-conducting membrane transporter HPY06_06410 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY06_06415 PF03466 LysR substrate binding domain HPY06_06415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_06420 PF00501 AMP-binding enzyme HPY06_06420 PF13193 AMP-binding enzyme C-terminal domain HPY06_06450 PF10415 Fumarase C C-terminus HPY06_06450 PF00206 Lyase HPY06_06460 PF01654 Cytochrome bd terminal oxidase subunit I HPY06_06465 PF02322 Cytochrome bd terminal oxidase subunit II HPY06_06470 PF12704 MacB-like periplasmic core domain HPY06_06470 PF02687 FtsX-like permease family HPY06_06470 PF00005 ABC transporter HPY06_06475 PF00005 ABC transporter HPY06_06475 PF02687 FtsX-like permease family HPY06_06475 PF12704 MacB-like periplasmic core domain HPY06_06480 PF02687 FtsX-like permease family HPY06_06480 PF12704 MacB-like periplasmic core domain HPY06_06490 PF00529 HlyD membrane-fusion protein of T1SS HPY06_06500 PF00175 Oxidoreductase NAD-binding domain HPY06_06505 PF04443 Acyl-protein synthetase, LuxE HPY06_06510 PF00296 Luciferase-like monooxygenase HPY06_06515 PF00296 Luciferase-like monooxygenase HPY06_06520 PF02273 Acyl transferase HPY06_06535 PF00709 Adenylosuccinate synthetase HPY06_06550 PF00977 Histidine biosynthesis protein HPY06_06555 PF00141 Peroxidase HPY06_06560 PF00232 Glycosyl hydrolase family 1 HPY06_06565 PF00356 Bacterial regulatory proteins, lacI family HPY06_06570 PF01042 Endoribonuclease L-PSP HPY06_06575 PF04074 YhcH/YjgK/YiaL HPY06_06580 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY06_06585 PF00455 DeoR C terminal sensor domain HPY06_06585 PF08220 DeoR-like helix-turn-helix domain HPY06_06590 PF17912 MalK OB fold domain HPY06_06590 PF00005 ABC transporter HPY06_06595 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_06600 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_06605 PF13416 Bacterial extracellular solute-binding protein HPY06_06615 PF01618 MotA/TolQ/ExbB proton channel family HPY06_06620 PF01618 MotA/TolQ/ExbB proton channel family HPY06_06625 PF02472 Biopolymer transport protein ExbD/TolR HPY06_06630 PF03544 Gram-negative bacterial TonB protein C-terminal HPY06_06640 PF14743 DNA ligase OB-like domain HPY06_06640 PF01068 ATP dependent DNA ligase domain HPY06_06650 PF01554 MatE HPY06_06660 PF03881 Fructosamine kinase HPY06_06670 PF00877 NlpC/P60 family HPY06_06675 PF12729 Four helix bundle sensory module for signal transduction HPY06_06675 PF00672 HAMP domain HPY06_06675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_06690 PF00480 ROK family HPY06_06700 PF00994 Probable molybdopterin binding domain HPY06_06700 PF03454 MoeA C-terminal region (domain IV) HPY06_06700 PF03453 MoeA N-terminal region (domain I and II) HPY06_06705 PF12804 MobA-like NTP transferase domain HPY06_06710 PF00005 ABC transporter HPY06_06710 PF08402 TOBE domain HPY06_06715 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_06720 PF12849 PBP superfamily domain HPY06_06725 PF02954 Bacterial regulatory protein, Fis family HPY06_06725 PF00072 Response regulator receiver domain HPY06_06725 PF00158 Sigma-54 interaction domain HPY06_06730 PF00989 PAS fold HPY06_06730 PF00512 His Kinase A (phospho-acceptor) domain HPY06_06730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_06735 PF00005 ABC transporter HPY06_06735 PF12848 ABC transporter HPY06_06740 PF02634 FdhD/NarQ family HPY06_06760 PF02613 Nitrate reductase delta subunit HPY06_06770 PF01568 Molydopterin dinucleotide binding domain HPY06_06770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY06_06770 PF00384 Molybdopterin oxidoreductase HPY06_06775 PF13247 4Fe-4S dicluster domain HPY06_06790 PF02146 Sir2 family HPY06_06795 PF04461 Protein of unknown function (DUF520) HPY06_06800 PF00793 DAHP synthetase I family HPY06_06815 PF13509 S1 domain HPY06_06815 PF17783 CvfB-like winged helix domain HPY06_06820 PF01189 16S rRNA methyltransferase RsmB/F HPY06_06820 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HPY06_06820 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HPY06_06825 PF02470 MlaD protein HPY06_06830 PF04403 Paraquat-inducible protein A HPY06_06835 PF00005 ABC transporter HPY06_06835 PF00664 ABC transporter transmembrane region HPY06_06840 PF13185 GAF domain HPY06_06845 PF17516 ProQ C-terminal domain HPY06_06845 PF04352 ProQ/FINO family HPY06_06850 PF17804 Tail specific protease N-terminal domain HPY06_06850 PF03572 Peptidase family S41 HPY06_06850 PF11818 C-terminal domain of tail specific protease (DUF3340) HPY06_06850 PF00595 PDZ domain HPY06_06860 PF01433 Peptidase family M1 domain HPY06_06860 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HPY06_06860 PF11940 Domain of unknown function (DUF3458) Ig-like fold HPY06_06870 PF05088 Bacterial NAD-glutamate dehydrogenase HPY06_06875 PF01180 Dihydroorotate dehydrogenase HPY06_06880 PF07126 Cell-division protein ZapC HPY06_06885 PF01170 Putative RNA methylase family UPF0020 HPY06_06885 PF02926 THUMP domain HPY06_06885 PF10672 S-adenosylmethionine-dependent methyltransferase HPY06_06905 PF04957 Ribosome modulation factor HPY06_06910 PF07977 FabA-like domain HPY06_06915 PF13654 AAA domain HPY06_06915 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY06_06920 PF06303 MatP N-terminal domain HPY06_06920 PF17414 MatP C-terminal ribbon-helix-helix domain HPY06_06995 PF11647 Membrane Localization Domain HPY06_06995 PF12146 Serine aminopeptidase, S33 HPY06_06995 PF07634 RtxA repeat HPY06_06995 PF11713 Peptidase C80 family HPY06_06995 PF16671 Actin cross-linking domain HPY06_07000 PF02794 RTX toxin acyltransferase family HPY06_07010 PF00005 ABC transporter HPY06_07010 PF03412 Peptidase C39 family HPY06_07010 PF00664 ABC transporter transmembrane region HPY06_07020 PF03412 Peptidase C39 family HPY06_07020 PF00664 ABC transporter transmembrane region HPY06_07020 PF00005 ABC transporter HPY06_07025 PF00512 His Kinase A (phospho-acceptor) domain HPY06_07025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_07025 PF09308 LuxQ, periplasmic HPY06_07025 PF00072 Response regulator receiver domain HPY06_07040 PF00115 Cytochrome C and Quinol oxidase polypeptide I HPY06_07055 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HPY06_07055 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY06_07065 PF00403 Heavy-metal-associated domain HPY06_07080 PF13545 Crp-like helix-turn-helix domain HPY06_07080 PF00027 Cyclic nucleotide-binding domain HPY06_07085 PF00582 Universal stress protein family HPY06_07090 PF01171 PP-loop family HPY06_07110 PF00005 ABC transporter HPY06_07110 PF08402 TOBE domain HPY06_07115 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_07120 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_07125 PF13416 Bacterial extracellular solute-binding protein HPY06_07130 PF13416 Bacterial extracellular solute-binding protein HPY06_07145 PF01235 Sodium:alanine symporter family HPY06_07150 PF01810 LysE type translocator HPY06_07185 PF16671 Actin cross-linking domain HPY06_07185 PF04717 Type VI secretion system, phage-baseplate injector HPY06_07190 PF05638 Type VI secretion system effector, Hcp HPY06_07195 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HPY06_07215 PF00271 Helicase conserved C-terminal domain HPY06_07215 PF00270 DEAD/DEAH box helicase HPY06_07220 PF00893 Small Multidrug Resistance protein HPY06_07225 PF07690 Major Facilitator Superfamily HPY06_07230 PF03466 LysR substrate binding domain HPY06_07230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_07240 PF01979 Amidohydrolase family HPY06_07245 PF03099 Biotin/lipoate A/B protein ligase family HPY06_07245 PF10437 Bacterial lipoate protein ligase C-terminus HPY06_07250 PF00012 Hsp70 protein HPY06_07260 PF00270 DEAD/DEAH box helicase HPY06_07260 PF11898 Domain of unknown function (DUF3418) HPY06_07260 PF04408 Helicase associated domain (HA2) HPY06_07260 PF00271 Helicase conserved C-terminal domain HPY06_07260 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HPY06_07280 PF03707 Bacterial signalling protein N terminal repeat HPY06_07280 PF00563 EAL domain HPY06_07280 PF00990 Diguanylate cyclase, GGDEF domain HPY06_07290 PF00012 Hsp70 protein HPY06_07295 PF00012 Hsp70 protein HPY06_07300 PF00990 Diguanylate cyclase, GGDEF domain HPY06_07300 PF17158 Membrane-associated sensor, integral membrane domain HPY06_07310 PF03707 Bacterial signalling protein N terminal repeat HPY06_07310 PF00990 Diguanylate cyclase, GGDEF domain HPY06_07310 PF00563 EAL domain HPY06_07330 PF06508 Queuosine biosynthesis protein QueC HPY06_07335 PF04055 Radical SAM superfamily HPY06_07345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY06_07345 PF14824 Sirohaem biosynthesis protein central HPY06_07345 PF10414 Sirohaem synthase dimerisation region HPY06_07350 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY06_07355 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_07360 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_07365 PF00005 ABC transporter HPY06_07370 PF01027 Inhibitor of apoptosis-promoting Bax1 HPY06_07375 PF04358 DsrC like protein HPY06_07380 PF00708 Acylphosphatase HPY06_07385 PF17785 PUA-like domain HPY06_07385 PF10672 S-adenosylmethionine-dependent methyltransferase HPY06_07390 PF00990 Diguanylate cyclase, GGDEF domain HPY06_07395 PF00462 Glutaredoxin HPY06_07395 PF08534 Redoxin HPY06_07400 PF00512 His Kinase A (phospho-acceptor) domain HPY06_07400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_07400 PF00672 HAMP domain HPY06_07400 PF01627 Hpt domain HPY06_07400 PF00072 Response regulator receiver domain HPY06_07400 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY06_07405 PF00072 Response regulator receiver domain HPY06_07410 PF02798 Glutathione S-transferase, N-terminal domain HPY06_07410 PF14497 Glutathione S-transferase, C-terminal domain HPY06_07420 PF04209 homogentisate 1,2-dioxygenase HPY06_07425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY06_07430 PF01546 Peptidase family M20/M25/M40 HPY06_07430 PF07687 Peptidase dimerisation domain HPY06_07445 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY06_07445 PF13193 AMP-binding enzyme C-terminal domain HPY06_07445 PF00501 AMP-binding enzyme HPY06_07450 PF04303 PrpF protein HPY06_07455 PF00694 Aconitase C-terminal domain HPY06_07455 PF00330 Aconitase family (aconitate hydratase) HPY06_07460 PF00285 Citrate synthase, C-terminal domain HPY06_07470 PF00392 Bacterial regulatory proteins, gntR family HPY06_07470 PF07729 FCD domain HPY06_07485 PF01970 Tripartite tricarboxylate transporter TctA family HPY06_07505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY06_07505 PF00529 HlyD membrane-fusion protein of T1SS HPY06_07520 PF02653 Branched-chain amino acid transport system / permease component HPY06_07525 PF00005 ABC transporter HPY06_07530 PF13407 Periplasmic binding protein domain HPY06_07550 PF00072 Response regulator receiver domain HPY06_07550 PF00486 Transcriptional regulatory protein, C terminal HPY06_07555 PF00512 His Kinase A (phospho-acceptor) domain HPY06_07555 PF00672 HAMP domain HPY06_07555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_07560 PF06629 MltA-interacting protein MipA HPY06_07565 PF04393 Protein of unknown function (DUF535) HPY06_07570 PF02954 Bacterial regulatory protein, Fis family HPY06_07570 PF00072 Response regulator receiver domain HPY06_07570 PF00158 Sigma-54 interaction domain HPY06_07575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_07575 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY06_07575 PF00512 His Kinase A (phospho-acceptor) domain HPY06_07580 PF00939 Sodium:sulfate symporter transmembrane region HPY06_07585 PF00672 HAMP domain HPY06_07585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_07590 PF00842 Alanine racemase, C-terminal domain HPY06_07590 PF01168 Alanine racemase, N-terminal domain HPY06_07595 PF00892 EamA-like transporter family HPY06_07605 PF13302 Acetyltransferase (GNAT) domain HPY06_07610 PF00158 Sigma-54 interaction domain HPY06_07610 PF18024 Helix-turn-helix domain HPY06_07615 PF05128 Domain of unknown function (DUF697) HPY06_07620 PF04317 YcjX-like family, DUF463 HPY06_07635 PF04715 Anthranilate synthase component I, N terminal region HPY06_07635 PF00425 chorismate binding enzyme HPY06_07640 PF00293 NUDIX domain HPY06_07645 PF03222 Tryptophan/tyrosine permease family HPY06_07650 PF03315 Serine dehydratase beta chain HPY06_07650 PF03313 Serine dehydratase alpha chain HPY06_07655 PF01242 6-pyruvoyl tetrahydropterin synthase HPY06_07660 PF00672 HAMP domain HPY06_07660 PF12729 Four helix bundle sensory module for signal transduction HPY06_07660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_07665 PF00152 tRNA synthetases class II (D, K and N) HPY06_07665 PF01336 OB-fold nucleic acid binding domain HPY06_07670 PF08543 Phosphomethylpyrimidine kinase HPY06_07675 PF00672 HAMP domain HPY06_07675 PF01966 HD domain HPY06_07680 PF00155 Aminotransferase class I and II HPY06_07695 PF17200 Single Cache domain 2 HPY06_07695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_07695 PF00672 HAMP domain HPY06_07700 PF04349 Periplasmic glucan biosynthesis protein, MdoG HPY06_07705 PF13506 Glycosyl transferase family 21 HPY06_07710 PF02028 BCCT, betaine/carnitine/choline family transporter HPY06_07715 PF01047 MarR family HPY06_07720 PF00196 Bacterial regulatory proteins, luxR family HPY06_07720 PF00072 Response regulator receiver domain HPY06_07725 PF17200 Single Cache domain 2 HPY06_07725 PF07730 Histidine kinase HPY06_07730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY06_07740 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY06_07755 PF00753 Metallo-beta-lactamase superfamily HPY06_07760 PF05951 Bacterial protein of unknown function (DUF882) HPY06_07790 PF00925 GTP cyclohydrolase II HPY06_07800 PF07690 Major Facilitator Superfamily HPY06_07815 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY06_07815 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY06_07825 PF03477 ATP cone domain HPY06_07825 PF00317 Ribonucleotide reductase, all-alpha domain HPY06_07825 PF02867 Ribonucleotide reductase, barrel domain HPY06_07830 PF00268 Ribonucleotide reductase, small chain HPY06_07835 PF00175 Oxidoreductase NAD-binding domain HPY06_07835 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY06_07835 PF00970 Oxidoreductase FAD-binding domain HPY06_07845 PF00994 Probable molybdopterin binding domain HPY06_07860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_07860 PF17200 Single Cache domain 2 HPY06_07860 PF00672 HAMP domain HPY06_07875 PF00005 ABC transporter HPY06_07880 PF01032 FecCD transport family HPY06_07885 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HPY06_07895 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HPY06_07900 PF02654 Cobalamin-5-phosphate synthase HPY06_07905 PF02277 Phosphoribosyltransferase HPY06_07910 PF01641 SelR domain HPY06_07920 PF08411 Exonuclease C-terminal HPY06_07920 PF00929 Exonuclease HPY06_07925 PF03788 LrgA family HPY06_07930 PF04172 LrgB-like family HPY06_07935 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HPY06_07935 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY06_07945 PF02222 ATP-grasp domain HPY06_07950 PF05724 Thiopurine S-methyltransferase (TPMT) HPY06_07960 PF00216 Bacterial DNA-binding protein HPY06_07965 PF03147 Ferredoxin-fold anticodon binding domain HPY06_07965 PF01588 Putative tRNA binding domain HPY06_07965 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HPY06_07965 PF03483 B3/4 domain HPY06_07965 PF03484 tRNA synthetase B5 domain HPY06_07970 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HPY06_07970 PF01409 tRNA synthetases class II core domain (F) HPY06_07980 PF00072 Response regulator receiver domain HPY06_07980 PF00990 Diguanylate cyclase, GGDEF domain HPY06_08005 PF01066 CDP-alcohol phosphatidyltransferase HPY06_08010 PF08459 UvrC Helix-hairpin-helix N-terminal HPY06_08010 PF02151 UvrB/uvrC motif HPY06_08010 PF01541 GIY-YIG catalytic domain HPY06_08015 PF00072 Response regulator receiver domain HPY06_08015 PF00196 Bacterial regulatory proteins, luxR family HPY06_08020 PF03104 DNA polymerase family B, exonuclease domain HPY06_08020 PF00136 DNA polymerase family B HPY06_08025 PF13426 PAS domain HPY06_08025 PF00563 EAL domain HPY06_08025 PF00990 Diguanylate cyclase, GGDEF domain HPY06_08035 PF09285 Elongation factor P, C-terminal HPY06_08035 PF08207 Elongation factor P (EF-P) KOW-like domain HPY06_08035 PF01132 Elongation factor P (EF-P) OB domain HPY06_08040 PF04269 Protein of unknown function, DUF440 HPY06_08050 PF07702 UTRA domain HPY06_08050 PF00392 Bacterial regulatory proteins, gntR family HPY06_08055 PF01979 Amidohydrolase family HPY06_08060 PF00491 Arginase family HPY06_08065 PF17392 Urocanase C-terminal domain HPY06_08065 PF17391 Urocanase N-terminal domain HPY06_08065 PF01175 Urocanase Rossmann-like domain HPY06_08070 PF00221 Aromatic amino acid lyase HPY06_08085 PF04191 Phospholipid methyltransferase HPY06_08090 PF13183 4Fe-4S dicluster domain HPY06_08090 PF01565 FAD binding domain HPY06_08090 PF02913 FAD linked oxidases, C-terminal domain HPY06_08105 PF13488 Glycine zipper HPY06_08105 PF00691 OmpA family HPY06_08125 PF01259 SAICAR synthetase HPY06_08135 PF00390 Malic enzyme, N-terminal domain HPY06_08135 PF03949 Malic enzyme, NAD binding domain HPY06_08145 PF02698 DUF218 domain HPY06_08150 PF00990 Diguanylate cyclase, GGDEF domain HPY06_08150 PF08448 PAS fold HPY06_08155 PF00266 Aminotransferase class-V HPY06_08165 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY06_08170 PF00664 ABC transporter transmembrane region HPY06_08170 PF00005 ABC transporter HPY06_08175 PF00005 ABC transporter HPY06_08175 PF00664 ABC transporter transmembrane region HPY06_08180 PF01479 S4 domain HPY06_08180 PF00849 RNA pseudouridylate synthase HPY06_08185 PF01300 Telomere recombination HPY06_08190 PF02811 PHP domain HPY06_08195 PF08056 Tryptophan operon leader peptide HPY06_08200 PF00425 chorismate binding enzyme HPY06_08200 PF04715 Anthranilate synthase component I, N terminal region HPY06_08205 PF00117 Glutamine amidotransferase class-I HPY06_08210 PF02885 Glycosyl transferase family, helical bundle domain HPY06_08210 PF00591 Glycosyl transferase family, a/b domain HPY06_08215 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HPY06_08215 PF00218 Indole-3-glycerol phosphate synthase HPY06_08220 PF00291 Pyridoxal-phosphate dependent enzyme HPY06_08225 PF00290 Tryptophan synthase alpha chain HPY06_08230 PF00375 Sodium:dicarboxylate symporter family HPY06_08235 PF00265 Thymidine kinase HPY06_08240 PF01336 OB-fold nucleic acid binding domain HPY06_08240 PF02938 GAD domain HPY06_08240 PF00152 tRNA synthetases class II (D, K and N) HPY06_08245 PF01904 Protein of unknown function DUF72 HPY06_08250 PF13649 Methyltransferase domain HPY06_08255 PF08003 Protein of unknown function (DUF1698) HPY06_08260 PF08443 RimK-like ATP-grasp domain HPY06_08260 PF18030 RimK PreATP-grasp domain HPY06_08275 PF00266 Aminotransferase class-V HPY06_08285 PF00989 PAS fold HPY06_08285 PF00512 His Kinase A (phospho-acceptor) domain HPY06_08285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_08300 PF04993 TfoX N-terminal domain HPY06_08300 PF04994 TfoX C-terminal domain HPY06_08310 PF03956 Lysine exporter LysO HPY06_08320 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY06_08325 PF01418 Helix-turn-helix domain, rpiR family HPY06_08325 PF01380 SIS domain HPY06_08330 PF00465 Iron-containing alcohol dehydrogenase HPY06_08330 PF00171 Aldehyde dehydrogenase family HPY06_08335 PF00462 Glutaredoxin HPY06_08340 PF06826 Predicted Permease Membrane Region HPY06_08340 PF02080 TrkA-C domain HPY06_08345 PF17871 AAA lid domain HPY06_08345 PF02861 Clp amino terminal domain, pathogenicity island component HPY06_08345 PF07724 AAA domain (Cdc48 subfamily) HPY06_08345 PF10431 C-terminal, D2-small domain, of ClpB protein HPY06_08345 PF00004 ATPase family associated with various cellular activities (AAA) HPY06_08350 PF02617 ATP-dependent Clp protease adaptor protein ClpS HPY06_08355 PF00313 'Cold-shock' DNA-binding domain HPY06_08360 PF03971 Monomeric isocitrate dehydrogenase HPY06_08365 PF00849 RNA pseudouridylate synthase HPY06_08370 PF01502 Phosphoribosyl-AMP cyclohydrolase HPY06_08370 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HPY06_08375 PF00977 Histidine biosynthesis protein HPY06_08380 PF00977 Histidine biosynthesis protein HPY06_08385 PF00117 Glutamine amidotransferase class-I HPY06_08390 PF00475 Imidazoleglycerol-phosphate dehydratase HPY06_08390 PF08645 Polynucleotide kinase 3 phosphatase HPY06_08395 PF00155 Aminotransferase class I and II HPY06_08400 PF00815 Histidinol dehydrogenase HPY06_08405 PF08029 HisG, C-terminal domain HPY06_08405 PF01634 ATP phosphoribosyltransferase HPY06_08410 PF03553 Na+/H+ antiporter family HPY06_08415 PF00816 H-NS histone family HPY06_08420 PF00294 pfkB family carbohydrate kinase HPY06_08430 PF04356 Protein of unknown function (DUF489) HPY06_08435 PF08328 Adenylosuccinate lyase C-terminal HPY06_08435 PF00206 Lyase HPY06_08445 PF16036 Chalcone isomerase-like HPY06_08470 PF00106 short chain dehydrogenase HPY06_08480 PF01435 Peptidase family M48 HPY06_08495 PF08241 Methyltransferase domain HPY06_08500 PF00155 Aminotransferase class I and II HPY06_08505 PF04055 Radical SAM superfamily HPY06_08505 PF06968 Biotin and Thiamin Synthesis associated domain HPY06_08510 PF00202 Aminotransferase class-III HPY06_08515 PF02403 Seryl-tRNA synthetase N-terminal domain HPY06_08515 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY06_08520 PF16193 AAA C-terminal domain HPY06_08520 PF00004 ATPase family associated with various cellular activities (AAA) HPY06_08520 PF12002 MgsA AAA+ ATPase C terminal HPY06_08525 PF03548 Outer membrane lipoprotein carrier protein LolA HPY06_08530 PF02810 SEC-C motif HPY06_08530 PF07517 SecA DEAD-like domain HPY06_08530 PF01043 SecA preprotein cross-linking domain HPY06_08530 PF07516 SecA Wing and Scaffold domain HPY06_08535 PF01207 Dihydrouridine synthase (Dus) HPY06_08540 PF00990 Diguanylate cyclase, GGDEF domain HPY06_08545 PF00005 ABC transporter HPY06_08550 PF02653 Branched-chain amino acid transport system / permease component HPY06_08560 PF09905 DNA-binding protein VF530 HPY06_08565 PF04217 Protein of unknown function, DUF412 HPY06_08570 PF00871 Acetokinase family HPY06_08575 PF07085 DRTGG domain HPY06_08575 PF01515 Phosphate acetyl/butaryl transferase HPY06_08580 PF13409 Glutathione S-transferase, N-terminal domain HPY06_08585 PF00005 ABC transporter HPY06_08585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY06_08590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY06_08590 PF00005 ABC transporter HPY06_08595 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY06_08595 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_08600 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_08605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY06_08615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_08615 PF00512 His Kinase A (phospho-acceptor) domain HPY06_08615 PF13188 PAS domain HPY06_08615 PF00072 Response regulator receiver domain HPY06_08615 PF08448 PAS fold HPY06_08620 PF02954 Bacterial regulatory protein, Fis family HPY06_08620 PF00072 Response regulator receiver domain HPY06_08620 PF00158 Sigma-54 interaction domain HPY06_08625 PF00990 Diguanylate cyclase, GGDEF domain HPY06_08625 PF03707 Bacterial signalling protein N terminal repeat HPY06_08625 PF13188 PAS domain HPY06_08625 PF00563 EAL domain HPY06_08630 PF00512 His Kinase A (phospho-acceptor) domain HPY06_08630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_08635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_08635 PF00512 His Kinase A (phospho-acceptor) domain HPY06_08635 PF00989 PAS fold HPY06_08635 PF13188 PAS domain HPY06_08635 PF13426 PAS domain HPY06_08645 PF00072 Response regulator receiver domain HPY06_08660 PF01300 Telomere recombination HPY06_08660 PF03481 Putative GTP-binding controlling metal-binding HPY06_08675 PF01161 Phosphatidylethanolamine-binding protein HPY06_08685 PF00704 Glycosyl hydrolases family 18 HPY06_08685 PF06483 Chitinase C HPY06_08700 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY06_08700 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY06_08705 PF01022 Bacterial regulatory protein, arsR family HPY06_08715 PF00990 Diguanylate cyclase, GGDEF domain HPY06_08715 PF08448 PAS fold HPY06_08725 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY06_08740 PF01037 Lrp/AsnC ligand binding domain HPY06_08740 PF13404 AsnC-type helix-turn-helix domain HPY06_08745 PF00291 Pyridoxal-phosphate dependent enzyme HPY06_08750 PF01343 Peptidase family S49 HPY06_08750 PF08496 Peptidase family S49 N-terminal HPY06_08755 PF00106 short chain dehydrogenase HPY06_08760 PF03692 Putative zinc- or iron-chelating domain HPY06_08765 PF03692 Putative zinc- or iron-chelating domain HPY06_08770 PF13662 Toprim domain HPY06_08770 PF02132 RecR protein HPY06_08775 PF02575 YbaB/EbfC DNA-binding family HPY06_08780 PF12169 DNA polymerase III subunits gamma and tau domain III HPY06_08780 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HPY06_08780 PF12170 DNA polymerase III tau subunit V interacting with alpha HPY06_08785 PF00156 Phosphoribosyl transferase domain HPY06_08790 PF04304 Protein of unknown function (DUF454) HPY06_08795 PF00072 Response regulator receiver domain HPY06_08800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_08800 PF03466 LysR substrate binding domain HPY06_08805 PF00881 Nitroreductase family HPY06_08810 PF00378 Enoyl-CoA hydratase/isomerase HPY06_08810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY06_08810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY06_08815 PF02803 Thiolase, C-terminal domain HPY06_08815 PF00108 Thiolase, N-terminal domain HPY06_08820 PF04542 Sigma-70 region 2 HPY06_08820 PF08281 Sigma-70, region 4 HPY06_08830 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY06_08835 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY06_08840 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY06_08845 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HPY06_08845 PF12557 Cob(I)alamin adenosyltransferase N terminal HPY06_08850 PF05170 AsmA family HPY06_08855 PF00485 Phosphoribulokinase / Uridine kinase family HPY06_08860 PF10609 NUBPL iron-transfer P-loop NTPase HPY06_08865 PF01588 Putative tRNA binding domain HPY06_08865 PF09334 tRNA synthetases class I (M) HPY06_08875 PF01048 Phosphorylase superfamily HPY06_08880 PF00403 Heavy-metal-associated domain HPY06_08885 PF01743 Poly A polymerase head domain HPY06_08885 PF00571 CBS domain HPY06_08890 PF07694 5TMR of 5TMR-LYT HPY06_08890 PF00990 Diguanylate cyclase, GGDEF domain HPY06_08895 PF02391 MoaE protein HPY06_08900 PF02597 ThiS family HPY06_08905 PF01967 MoaC family HPY06_08910 PF00994 Probable molybdopterin binding domain HPY06_08915 PF04055 Radical SAM superfamily HPY06_08915 PF06463 Molybdenum Cofactor Synthesis C HPY06_08920 PF01933 Uncharacterised protein family UPF0052 HPY06_08925 PF01627 Hpt domain HPY06_08930 PF00158 Sigma-54 interaction domain HPY06_08930 PF00072 Response regulator receiver domain HPY06_08930 PF02954 Bacterial regulatory protein, Fis family HPY06_08935 PF00271 Helicase conserved C-terminal domain HPY06_08935 PF02151 UvrB/uvrC motif HPY06_08935 PF17757 UvrB interaction domain HPY06_08935 PF12344 Ultra-violet resistance protein B HPY06_08935 PF04851 Type III restriction enzyme, res subunit HPY06_08945 PF02508 Rnf-Nqr subunit, membrane protein HPY06_08950 PF04060 Putative Fe-S cluster HPY06_08955 PF12838 4Fe-4S dicluster domain HPY06_08955 PF13375 RnfC Barrel sandwich hybrid domain HPY06_08955 PF10531 SLBB domain HPY06_08955 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HPY06_08960 PF03116 NQR2, RnfD, RnfE family HPY06_08965 PF04205 FMN-binding domain HPY06_08970 PF02508 Rnf-Nqr subunit, membrane protein HPY06_08975 PF10576 Iron-sulfur binding domain of endonuclease III HPY06_08975 PF00633 Helix-hairpin-helix motif HPY06_08975 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY06_08980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY06_08985 PF10952 Protein of unknown function (DUF2753) HPY06_08990 PF00691 OmpA family HPY06_08990 PF18393 MotY N-terminal domain HPY06_08995 PF00929 Exonuclease HPY06_09000 PF03553 Na+/H+ antiporter family HPY06_09000 PF13726 Na+-H+ antiporter family HPY06_09005 PF00156 Phosphoribosyl transferase domain HPY06_09010 PF02674 Colicin V production protein HPY06_09015 PF05036 Sporulation related domain HPY06_09020 PF08245 Mur ligase middle domain HPY06_09020 PF02875 Mur ligase family, glutamate ligase domain HPY06_09025 PF17848 Acetyl-coA carboxylase zinc finger domain HPY06_09025 PF01039 Carboxyl transferase domain HPY06_09030 PF01416 tRNA pseudouridine synthase HPY06_09040 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY06_09040 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HPY06_09045 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY06_09045 PF00367 phosphotransferase system, EIIB HPY06_09045 PF02378 Phosphotransferase system, EIIC HPY06_09050 PF01979 Amidohydrolase family HPY06_09055 PF00480 ROK family HPY06_09055 PF01047 MarR family HPY06_09060 PF00999 Sodium/hydrogen exchanger family HPY06_09060 PF02254 TrkA-N domain HPY06_09065 PF00733 Asparagine synthase HPY06_09065 PF13537 Glutamine amidotransferase domain HPY06_09070 PF02357 Transcription termination factor nusG HPY06_09075 PF00854 POT family HPY06_09080 PF00762 Ferrochelatase HPY06_09085 PF05191 Adenylate kinase, active site lid HPY06_09090 PF00183 Hsp90 protein HPY06_09090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_09095 PF00486 Transcriptional regulatory protein, C terminal HPY06_09100 PF17323 Trans-membrane regulatory protein ToxS HPY06_09110 PF12850 Calcineurin-like phosphoesterase superfamily domain HPY06_09115 PF08338 Domain of unknown function (DUF1731) HPY06_09115 PF01370 NAD dependent epimerase/dehydratase family HPY06_09120 PF00106 short chain dehydrogenase HPY06_09125 PF00085 Thioredoxin HPY06_09130 PF01145 SPFH domain / Band 7 family HPY06_09130 PF16200 C-terminal region of band_7 HPY06_09135 PF01957 NfeD-like C-terminal, partner-binding HPY06_09140 PF13411 MerR HTH family regulatory protein HPY06_09150 PF13609 Gram-negative porin HPY06_09155 PF12826 Helix-hairpin-helix motif HPY06_09155 PF03120 NAD-dependent DNA ligase OB-fold domain HPY06_09155 PF00533 BRCA1 C Terminus (BRCT) domain HPY06_09155 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HPY06_09155 PF01653 NAD-dependent DNA ligase adenylation domain HPY06_09160 PF04354 ZipA, C-terminal FtsZ-binding domain HPY06_09170 PF00291 Pyridoxal-phosphate dependent enzyme HPY06_09175 PF00381 PTS HPr component phosphorylation site HPY06_09180 PF00391 PEP-utilising enzyme, mobile domain HPY06_09180 PF02896 PEP-utilising enzyme, TIM barrel domain HPY06_09180 PF05524 PEP-utilising enzyme, N-terminal HPY06_09185 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY06_09190 PF01494 FAD binding domain HPY06_09195 PF01938 TRAM domain HPY06_09195 PF00919 Uncharacterized protein family UPF0004 HPY06_09195 PF04055 Radical SAM superfamily HPY06_09200 PF02562 PhoH-like protein HPY06_09205 PF02130 Uncharacterized protein family UPF0054 HPY06_09210 PF00571 CBS domain HPY06_09210 PF03471 Transporter associated domain HPY06_09215 PF00795 Carbon-nitrogen hydrolase HPY06_09220 PF07295 Zinc-ribbon containing domain HPY06_09225 PF00133 tRNA synthetases class I (I, L, M and V) HPY06_09225 PF08264 Anticodon-binding domain of tRNA HPY06_09225 PF13603 Leucyl-tRNA synthetase, Domain 2 HPY06_09230 PF04390 Lipopolysaccharide-assembly HPY06_09235 PF06144 DNA polymerase III, delta subunit HPY06_09235 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HPY06_09245 PF02590 Predicted SPOUT methyltransferase HPY06_09250 PF03717 Penicillin-binding Protein dimerisation domain HPY06_09250 PF00905 Penicillin binding protein transpeptidase domain HPY06_09255 PF01098 Cell cycle protein HPY06_09260 PF05036 Sporulation related domain HPY06_09260 PF03330 Lytic transglycolase HPY06_09265 PF07943 Penicillin-binding protein 5, C-terminal domain HPY06_09265 PF00768 D-alanyl-D-alanine carboxypeptidase HPY06_09270 PF04359 Protein of unknown function (DUF493) HPY06_09275 PF03099 Biotin/lipoate A/B protein ligase family HPY06_09280 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HPY06_09280 PF04055 Radical SAM superfamily HPY06_09290 PF00464 Serine hydroxymethyltransferase HPY06_09310 PF02706 Chain length determinant protein HPY06_09310 PF13807 G-rich domain on putative tyrosine kinase HPY06_09310 PF13614 AAA domain HPY06_09315 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HPY06_09315 PF10531 SLBB domain HPY06_09315 PF02563 Polysaccharide biosynthesis/export protein HPY06_09325 PF02397 Bacterial sugar transferase HPY06_09340 PF17945 Beta/Gamma crystallin HPY06_09340 PF12561 ToxR activated gene A lipoprotein domain HPY06_09355 PF03808 Glycosyl transferase WecB/TagA/CpsF family HPY06_09365 PF00862 Sucrose synthase HPY06_09365 PF00534 Glycosyl transferases group 1 HPY06_09375 PF00132 Bacterial transferase hexapeptide (six repeats) HPY06_09395 PF14602 Hexapeptide repeat of succinyl-transferase HPY06_09395 PF12464 Maltose acetyltransferase HPY06_09400 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HPY06_09400 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY06_09400 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY06_09405 PF02350 UDP-N-acetylglucosamine 2-epimerase HPY06_09410 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY06_09415 PF00873 AcrB/AcrD/AcrF family HPY06_09420 PF13533 Biotin-lipoyl like HPY06_09445 PF16657 Maltogenic Amylase, C-terminal domain HPY06_09445 PF00128 Alpha amylase, catalytic domain HPY06_09450 PF00367 phosphotransferase system, EIIB HPY06_09450 PF02378 Phosphotransferase system, EIIC HPY06_09455 PF00356 Bacterial regulatory proteins, lacI family HPY06_09465 PF09383 NIL domain HPY06_09465 PF00005 ABC transporter HPY06_09470 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_09475 PF03180 NLPA lipoprotein HPY06_09480 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HPY06_09485 PF07348 Syd protein (SUKH-2) HPY06_09490 PF14489 QueF-like protein HPY06_09490 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HPY06_09500 PF00990 Diguanylate cyclase, GGDEF domain HPY06_09505 PF11892 Domain of unknown function (DUF3412) HPY06_09505 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HPY06_09505 PF03641 Possible lysine decarboxylase HPY06_09510 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY06_09510 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY06_09515 PF04241 Protein of unknown function (DUF423) HPY06_09520 PF03466 LysR substrate binding domain HPY06_09520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_09525 PF02568 Thiamine biosynthesis protein (ThiI) HPY06_09525 PF02926 THUMP domain HPY06_09530 PF13677 Membrane MotB of proton-channel complex MotA/MotB HPY06_09530 PF00691 OmpA family HPY06_09535 PF01618 MotA/TolQ/ExbB proton channel family HPY06_09540 PF02609 Exonuclease VII small subunit HPY06_09545 PF00348 Polyprenyl synthetase HPY06_09550 PF02780 Transketolase, C-terminal domain HPY06_09550 PF02779 Transketolase, pyrimidine binding domain HPY06_09550 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HPY06_09555 PF00849 RNA pseudouridylate synthase HPY06_09560 PF04287 tRNA pseudouridine synthase C HPY06_09575 PF13302 Acetyltransferase (GNAT) domain HPY06_09585 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HPY06_09590 PF03806 AbgT putative transporter family HPY06_09595 PF00444 Ribosomal protein L36 HPY06_09600 PF01197 Ribosomal protein L31 HPY06_09605 PF01980 tRNA-methyltransferase O HPY06_09605 PF18389 TrmO C-terminal domain HPY06_09610 PF03129 Anticodon binding domain HPY06_09610 PF04073 Aminoacyl-tRNA editing domain HPY06_09610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY06_09620 PF06786 Uncharacterised protein family (UPF0253) HPY06_09630 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HPY06_09630 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HPY06_09630 PF02769 AIR synthase related protein, C-terminal domain HPY06_09640 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY06_09640 PF01464 Transglycosylase SLT domain HPY06_09645 PF14437 MafB19-like deaminase HPY06_09650 PF03806 AbgT putative transporter family HPY06_09675 PF00114 Pilin (bacterial filament) HPY06_09675 PF07963 Prokaryotic N-terminal methylation motif HPY06_09680 PF00226 DnaJ domain HPY06_09680 PF01556 DnaJ C terminal domain HPY06_09680 PF00684 DnaJ central domain HPY06_09685 PF00012 Hsp70 protein HPY06_09690 PF01025 GrpE HPY06_09695 PF01513 ATP-NAD kinase HPY06_09700 PF02463 RecF/RecN/SMC N terminal domain HPY06_09705 PF04355 SmpA / OmlA family HPY06_09710 PF03658 RnfH family Ubiquitin HPY06_09715 PF03364 Polyketide cyclase / dehydrase and lipid transport HPY06_09720 PF01668 SmpB protein HPY06_09750 PF00145 C-5 cytosine-specific DNA methylase HPY06_09755 PF00145 C-5 cytosine-specific DNA methylase HPY06_09775 PF11953 Domain of unknown function (DUF3470) HPY06_09775 PF00037 4Fe-4S binding domain HPY06_09780 PF00588 SpoU rRNA Methylase family HPY06_09780 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY06_09790 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase HPY06_09795 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase HPY06_09800 PF04223 Citrate lyase, alpha subunit (CitF) HPY06_09805 PF03328 HpcH/HpaI aldolase/citrate lyase family HPY06_09810 PF06857 Malonate decarboxylase delta subunit (MdcD) HPY06_09815 PF08218 Citrate lyase ligase C-terminal domain HPY06_09820 PF03390 2-hydroxycarboxylate transporter family HPY06_09825 PF04277 Oxaloacetate decarboxylase, gamma chain HPY06_09830 PF00364 Biotin-requiring enzyme HPY06_09830 PF00682 HMGL-like HPY06_09830 PF02436 Conserved carboxylase domain HPY06_09835 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HPY06_09840 PF17203 Single cache domain 3 HPY06_09840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_09845 PF12431 Transcriptional regulator HPY06_09845 PF00072 Response regulator receiver domain HPY06_09865 PF01266 FAD dependent oxidoreductase HPY06_09870 PF01235 Sodium:alanine symporter family HPY06_09875 PF14863 Alkyl sulfatase dimerisation HPY06_09875 PF00753 Metallo-beta-lactamase superfamily HPY06_09875 PF14864 Alkyl sulfatase C-terminal HPY06_09880 PF03466 LysR substrate binding domain HPY06_09880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_09885 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HPY06_09885 PF01648 4'-phosphopantetheinyl transferase superfamily HPY06_09890 PF00005 ABC transporter HPY06_09895 PF01032 FecCD transport family HPY06_09900 PF01032 FecCD transport family HPY06_09905 PF01497 Periplasmic binding protein HPY06_09920 PF00425 chorismate binding enzyme HPY06_09925 PF00501 AMP-binding enzyme HPY06_09925 PF13193 AMP-binding enzyme C-terminal domain HPY06_09930 PF00857 Isochorismatase family HPY06_09930 PF00550 Phosphopantetheine attachment site HPY06_09935 PF01184 GPR1/FUN34/yaaH family HPY06_09940 PF06483 Chitinase C HPY06_09940 PF00704 Glycosyl hydrolases family 18 HPY06_09945 PF01510 N-acetylmuramoyl-L-alanine amidase HPY06_09950 PF00732 GMC oxidoreductase HPY06_09950 PF05199 GMC oxidoreductase HPY06_09955 PF00117 Glutamine amidotransferase class-I HPY06_09955 PF00958 GMP synthase C terminal domain HPY06_09955 PF02540 NAD synthase HPY06_09960 PF00571 CBS domain HPY06_09960 PF00478 IMP dehydrogenase / GMP reductase domain HPY06_09965 PF02601 Exonuclease VII, large subunit HPY06_09965 PF13742 OB-fold nucleic acid binding domain HPY06_09980 PF01926 50S ribosome-binding GTPase HPY06_09980 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HPY06_09985 PF13360 PQQ-like domain HPY06_09990 PF09976 Tetratricopeptide repeat-like domain HPY06_09995 PF03129 Anticodon binding domain HPY06_09995 PF13393 Histidyl-tRNA synthetase HPY06_10000 PF04551 GcpE protein HPY06_10005 PF13464 Domain of unknown function (DUF4115) HPY06_10010 PF04055 Radical SAM superfamily HPY06_10015 PF00334 Nucleoside diphosphate kinase HPY06_10020 PF00883 Cytosol aminopeptidase family, catalytic domain HPY06_10020 PF12404 Peptidase HPY06_10025 PF04384 Iron-sulphur cluster assembly HPY06_10030 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY06_10035 PF00012 Hsp70 protein HPY06_10040 PF07743 HSCB C-terminal oligomerisation domain HPY06_10040 PF00226 DnaJ domain HPY06_10045 PF01521 Iron-sulphur cluster biosynthesis HPY06_10050 PF01592 NifU-like N terminal domain HPY06_10055 PF00266 Aminotransferase class-V HPY06_10060 PF02082 Transcriptional regulator HPY06_10065 PF00588 SpoU rRNA Methylase family HPY06_10070 PF00459 Inositol monophosphatase family HPY06_10075 PF07549 SecD/SecF GG Motif HPY06_10075 PF02355 Protein export membrane protein HPY06_10080 PF07549 SecD/SecF GG Motif HPY06_10080 PF02355 Protein export membrane protein HPY06_10080 PF13721 SecD export protein N-terminal TM region HPY06_10085 PF02699 Preprotein translocase subunit HPY06_10090 PF01702 Queuine tRNA-ribosyltransferase HPY06_10095 PF02547 Queuosine biosynthesis protein HPY06_10100 PF00571 CBS domain HPY06_10105 PF00463 Isocitrate lyase family HPY06_10110 PF01274 Malate synthase HPY06_10115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_10115 PF03466 LysR substrate binding domain HPY06_10120 PF00578 AhpC/TSA family HPY06_10120 PF10417 C-terminal domain of 1-Cys peroxiredoxin HPY06_10125 PF03932 CutC family HPY06_10130 PF03976 Polyphosphate kinase 2 (PPK2) HPY06_10135 PF01895 PhoU domain HPY06_10140 PF00005 ABC transporter HPY06_10145 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_10150 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_10155 PF13090 Polyphosphate kinase C-terminal domain 2 HPY06_10155 PF13089 Polyphosphate kinase N-terminal domain HPY06_10155 PF02503 Polyphosphate kinase middle domain HPY06_10155 PF17941 Polyphosphate kinase C-terminal domain 1 HPY06_10160 PF02541 Ppx/GppA phosphatase family HPY06_10165 PF12849 PBP superfamily domain HPY06_10170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_10170 PF11808 Phosphate regulon sensor protein PhoR HPY06_10170 PF00512 His Kinase A (phospho-acceptor) domain HPY06_10170 PF00989 PAS fold HPY06_10175 PF00072 Response regulator receiver domain HPY06_10175 PF00486 Transcriptional regulatory protein, C terminal HPY06_10180 PF04381 Putative exonuclease, RdgC HPY06_10190 PF00037 4Fe-4S binding domain HPY06_10195 PF00881 Nitroreductase family HPY06_10235 PF00004 ATPase family associated with various cellular activities (AAA) HPY06_10235 PF07724 AAA domain (Cdc48 subfamily) HPY06_10235 PF17871 AAA lid domain HPY06_10235 PF10431 C-terminal, D2-small domain, of ClpB protein HPY06_10235 PF02861 Clp amino terminal domain, pathogenicity island component HPY06_10245 PF00849 RNA pseudouridylate synthase HPY06_10245 PF01479 S4 domain HPY06_10250 PF13525 Outer membrane lipoprotein HPY06_10255 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY06_10260 PF01817 Chorismate mutase type II HPY06_10260 PF00800 Prephenate dehydratase HPY06_10265 PF13416 Bacterial extracellular solute-binding protein HPY06_10270 PF00990 Diguanylate cyclase, GGDEF domain HPY06_10270 PF00563 EAL domain HPY06_10275 PF01931 Protein of unknown function DUF84 HPY06_10280 PF01371 Trp repressor protein HPY06_10285 PF01464 Transglycosylase SLT domain HPY06_10285 PF14718 Soluble lytic murein transglycosylase L domain HPY06_10290 PF12848 ABC transporter HPY06_10290 PF00005 ABC transporter HPY06_10295 PF07238 PilZ domain HPY06_10300 PF01817 Chorismate mutase type II HPY06_10300 PF02153 Prephenate dehydrogenase HPY06_10305 PF00793 DAHP synthetase I family HPY06_10310 PF06580 Histidine kinase HPY06_10310 PF07694 5TMR of 5TMR-LYT HPY06_10315 PF04397 LytTr DNA-binding domain HPY06_10315 PF00072 Response regulator receiver domain HPY06_10320 PF00933 Glycosyl hydrolase family 3 N terminal domain HPY06_10325 PF03702 Anhydro-N-acetylmuramic acid kinase HPY06_10330 PF13580 SIS domain HPY06_10345 PF02554 Carbon starvation protein CstA HPY06_10350 PF02401 LytB protein HPY06_10355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY06_10360 PF01252 Signal peptidase (SPase) II HPY06_10365 PF00133 tRNA synthetases class I (I, L, M and V) HPY06_10365 PF06827 Zinc finger found in FPG and IleRS HPY06_10365 PF08264 Anticodon-binding domain of tRNA HPY06_10370 PF06574 FAD synthetase HPY06_10370 PF01687 Riboflavin kinase HPY06_10375 PF03023 Lipid II flippase MurJ HPY06_10380 PF01649 Ribosomal protein S20 HPY06_10385 PF01022 Bacterial regulatory protein, arsR family HPY06_10390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_10390 PF03466 LysR substrate binding domain HPY06_10395 PF02690 Na+/Pi-cotransporter HPY06_10400 PF00303 Thymidylate synthase HPY06_10405 PF01790 Prolipoprotein diacylglyceryl transferase HPY06_10410 PF01925 Sulfite exporter TauE/SafE HPY06_10415 PF05524 PEP-utilising enzyme, N-terminal HPY06_10415 PF02896 PEP-utilising enzyme, TIM barrel domain HPY06_10415 PF01590 GAF domain HPY06_10415 PF00391 PEP-utilising enzyme, mobile domain HPY06_10420 PF00293 NUDIX domain HPY06_10425 PF02976 DNA mismatch repair enzyme MutH HPY06_10430 PF00248 Aldo/keto reductase family HPY06_10440 PF00072 Response regulator receiver domain HPY06_10440 PF02954 Bacterial regulatory protein, Fis family HPY06_10440 PF00158 Sigma-54 interaction domain HPY06_10445 PF01336 OB-fold nucleic acid binding domain HPY06_10445 PF00152 tRNA synthetases class II (D, K and N) HPY06_10455 PF05525 Branched-chain amino acid transport protein HPY06_10460 PF05175 Methyltransferase small domain HPY06_10465 PF00270 DEAD/DEAH box helicase HPY06_10465 PF00271 Helicase conserved C-terminal domain HPY06_10470 PF03144 Elongation factor Tu domain 2 HPY06_10470 PF00009 Elongation factor Tu GTP binding domain HPY06_10470 PF16658 Class II release factor RF3, C-terminal domain HPY06_10475 PF03707 Bacterial signalling protein N terminal repeat HPY06_10475 PF00563 EAL domain HPY06_10475 PF00990 Diguanylate cyclase, GGDEF domain HPY06_10490 PF13508 Acetyltransferase (GNAT) domain HPY06_10495 PF02036 SCP-2 sterol transfer family HPY06_10500 PF03707 Bacterial signalling protein N terminal repeat HPY06_10500 PF00990 Diguanylate cyclase, GGDEF domain HPY06_10500 PF00563 EAL domain HPY06_10505 PF01136 Peptidase family U32 HPY06_10510 PF01136 Peptidase family U32 HPY06_10515 PF14706 Transposase DNA-binding HPY06_10515 PF02281 Transposase Tn5 dimerisation domain HPY06_10515 PF01609 Transposase DDE domain HPY06_10530 PF13181 Tetratricopeptide repeat HPY06_10530 PF07719 Tetratricopeptide repeat HPY06_10535 PF00013 KH domain HPY06_10535 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HPY06_10535 PF01138 3' exoribonuclease family, domain 1 HPY06_10535 PF00575 S1 RNA binding domain HPY06_10535 PF03725 3' exoribonuclease family, domain 2 HPY06_10540 PF00312 Ribosomal protein S15 HPY06_10545 PF01509 TruB family pseudouridylate synthase (N terminal domain) HPY06_10545 PF09157 Pseudouridine synthase II TruB, C-terminal HPY06_10545 PF16198 tRNA pseudouridylate synthase B C-terminal domain HPY06_10550 PF02033 Ribosome-binding factor A HPY06_10555 PF00009 Elongation factor Tu GTP binding domain HPY06_10555 PF11987 Translation-initiation factor 2 HPY06_10555 PF08364 Bacterial translation initiation factor IF-2 associated region HPY06_10555 PF04760 Translation initiation factor IF-2, N-terminal region HPY06_10560 PF00575 S1 RNA binding domain HPY06_10560 PF08529 NusA N-terminal domain HPY06_10560 PF13184 NusA-like KH domain HPY06_10565 PF17384 RimP C-terminal SH3 domain HPY06_10565 PF02576 RimP N-terminal domain HPY06_10580 PF03840 Preprotein translocase SecG subunit HPY06_10585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY06_10585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY06_10585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY06_10585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY06_10590 PF00809 Pterin binding enzyme HPY06_10595 PF00004 ATPase family associated with various cellular activities (AAA) HPY06_10595 PF06480 FtsH Extracellular HPY06_10595 PF17862 AAA+ lid domain HPY06_10595 PF01434 Peptidase family M41 HPY06_10600 PF01728 FtsJ-like methyltransferase HPY06_10605 PF01985 CRS1 / YhbY (CRM) domain HPY06_10610 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY06_10610 PF03449 Transcription elongation factor, N-terminal HPY06_10615 PF13609 Gram-negative porin HPY06_10620 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HPY06_10625 PF01479 S4 domain HPY06_10625 PF00579 tRNA synthetases class I (W and Y) HPY06_10630 PF04225 Opacity-associated protein A LysM-like domain HPY06_10630 PF01551 Peptidase family M23 HPY06_10635 PF00873 AcrB/AcrD/AcrF family HPY06_10645 PF01521 Iron-sulphur cluster biosynthesis HPY06_10650 PF00202 Aminotransferase class-III HPY06_10655 PF01594 AI-2E family transporter HPY06_10660 PF08468 Methyltransferase small domain N-terminal HPY06_10660 PF05175 Methyltransferase small domain HPY06_10665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_10665 PF00512 His Kinase A (phospho-acceptor) domain HPY06_10665 PF00072 Response regulator receiver domain HPY06_10665 PF09308 LuxQ, periplasmic HPY06_10670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY06_10675 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_10680 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY06_10680 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_10685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY06_10685 PF00005 ABC transporter HPY06_10690 PF00005 ABC transporter HPY06_10690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY06_10700 PF01869 BadF/BadG/BcrA/BcrD ATPase family HPY06_10705 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY06_10705 PF02838 Glycosyl hydrolase family 20, domain 2 HPY06_10710 PF06165 Glycosyltransferase family 36 HPY06_10710 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain HPY06_10715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY06_10715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY06_10715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY06_10715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY06_10720 PF00005 ABC transporter HPY06_10720 PF08402 TOBE domain HPY06_10730 PF13416 Bacterial extracellular solute-binding protein HPY06_10735 PF00909 Ammonium Transporter Family HPY06_10740 PF00543 Nitrogen regulatory protein P-II HPY06_10745 PF06062 Uncharacterised protein family (UPF0231) HPY06_10750 PF06434 Aconitate hydratase 2 N-terminus HPY06_10750 PF11791 Aconitate B N-terminal domain HPY06_10750 PF00330 Aconitase family (aconitate hydratase) HPY06_10755 PF01734 Patatin-like phospholipase HPY06_10760 PF00912 Transglycosylase HPY06_10760 PF14814 Bifunctional transglycosylase second domain HPY06_10760 PF00905 Penicillin binding protein transpeptidase domain HPY06_10765 PF00270 DEAD/DEAH box helicase HPY06_10765 PF08482 ATP-dependent helicase C-terminal HPY06_10765 PF04408 Helicase associated domain (HA2) HPY06_10765 PF00271 Helicase conserved C-terminal domain HPY06_10775 PF17746 SfsA N-terminal OB domain HPY06_10775 PF03749 Sugar fermentation stimulation protein RE domain HPY06_10780 PF01258 Prokaryotic dksA/traR C4-type zinc finger HPY06_10785 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY06_10790 PF12626 Polymerase A arginine-rich C-terminus HPY06_10790 PF01743 Poly A polymerase head domain HPY06_10790 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY06_10795 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY06_10800 PF02548 Ketopantoate hydroxymethyltransferase HPY06_10805 PF02569 Pantoate-beta-alanine ligase HPY06_10810 PF01061 ABC-2 type transporter HPY06_10815 PF00005 ABC transporter HPY06_10820 PF01740 STAS domain HPY06_10820 PF00916 Sulfate permease family HPY06_10825 PF00484 Carbonic anhydrase HPY06_10830 PF00156 Phosphoribosyl transferase domain HPY06_10835 PF00440 Bacterial regulatory proteins, tetR family HPY06_10840 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY06_10845 PF04348 LppC putative lipoprotein HPY06_10850 PF02021 Uncharacterised protein family UPF0102 HPY06_10855 PF13580 SIS domain HPY06_10860 PF04972 BON domain HPY06_10865 PF04386 Stringent starvation protein B HPY06_10870 PF00043 Glutathione S-transferase, C-terminal domain HPY06_10870 PF02798 Glutathione S-transferase, N-terminal domain HPY06_10875 PF02167 Cytochrome C1 family HPY06_10880 PF00032 Cytochrome b(C-terminal)/b6/petD HPY06_10880 PF00033 Cytochrome b/b6/petB HPY06_10885 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HPY06_10885 PF00355 Rieske [2Fe-2S] domain HPY06_10890 PF00380 Ribosomal protein S9/S16 HPY06_10895 PF00572 Ribosomal protein L13 HPY06_10900 PF03969 AFG1-like ATPase HPY06_10910 PF00595 PDZ domain HPY06_10915 PF13180 PDZ domain HPY06_10920 PF01245 Ribosomal protein L19 HPY06_10925 PF01746 tRNA (Guanine-1)-methyltransferase HPY06_10930 PF05239 PRC-barrel domain HPY06_10930 PF01782 RimM N-terminal domain HPY06_10935 PF00886 Ribosomal protein S16 HPY06_10940 PF02978 Signal peptide binding domain HPY06_10940 PF02881 SRP54-type protein, helical bundle domain HPY06_10940 PF00448 SRP54-type protein, GTPase domain HPY06_10945 PF01578 Cytochrome C assembly protein HPY06_10950 PF00571 CBS domain HPY06_10950 PF03471 Transporter associated domain HPY06_10950 PF01595 Cyclin M transmembrane N-terminal domain HPY06_10955 PF02664 S-Ribosylhomocysteinase (LuxS) HPY06_10960 PF04262 Glutamate-cysteine ligase HPY06_10965 PF00675 Insulinase (Peptidase family M16) HPY06_10965 PF05193 Peptidase M16 inactive domain HPY06_10970 PF09335 SNARE associated Golgi protein HPY06_10980 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HPY06_10985 PF02436 Conserved carboxylase domain HPY06_10985 PF00682 HMGL-like HPY06_10985 PF00364 Biotin-requiring enzyme HPY06_10990 PF04277 Oxaloacetate decarboxylase, gamma chain HPY06_11035 PF02599 Global regulator protein family HPY06_11040 PF01842 ACT domain HPY06_11040 PF00696 Amino acid kinase family HPY06_11040 PF13840 ACT domain HPY06_11045 PF02272 DHHA1 domain HPY06_11045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY06_11045 PF01411 tRNA synthetases class II (A) HPY06_11050 PF02631 RecX family HPY06_11055 PF00154 recA bacterial DNA recombination protein HPY06_11060 PF02464 Competence-damaged protein HPY06_11065 PF00005 ABC transporter HPY06_11065 PF12857 TOBE-like domain HPY06_11070 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_11075 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_11085 PF00291 Pyridoxal-phosphate dependent enzyme HPY06_11090 PF01624 MutS domain I HPY06_11090 PF05188 MutS domain II HPY06_11090 PF05192 MutS domain III HPY06_11090 PF05190 MutS family domain IV HPY06_11090 PF00488 MutS domain V HPY06_11095 PF04542 Sigma-70 region 2 HPY06_11095 PF04539 Sigma-70 region 3 HPY06_11095 PF00140 Sigma-70 factor, region 1.2 HPY06_11095 PF04545 Sigma-70, region 4 HPY06_11100 PF01551 Peptidase family M23 HPY06_11100 PF01476 LysM domain HPY06_11110 PF01975 Survival protein SurE HPY06_11115 PF01142 tRNA pseudouridine synthase D (TruD) HPY06_11120 PF02542 YgbB family HPY06_11125 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HPY06_11130 PF04977 Septum formation initiator HPY06_11135 PF02673 Bacitracin resistance protein BacA HPY06_11140 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY06_11145 PF02152 Dihydroneopterin aldolase HPY06_11150 PF02660 Glycerol-3-phosphate acyltransferase HPY06_11155 PF00561 alpha/beta hydrolase fold HPY06_11160 PF00814 Glycoprotease family HPY06_11165 PF01165 Ribosomal protein S21 HPY06_11170 PF09424 Yqey-like protein HPY06_11175 PF08278 DNA primase DnaG DnaB-binding HPY06_11175 PF08275 DNA primase catalytic core, N-terminal domain HPY06_11175 PF10410 DnaB-helicase binding domain of primase HPY06_11175 PF01807 CHC2 zinc finger HPY06_11180 PF00140 Sigma-70 factor, region 1.2 HPY06_11180 PF04539 Sigma-70 region 3 HPY06_11180 PF04545 Sigma-70, region 4 HPY06_11180 PF03979 Sigma-70 factor, region 1.1 HPY06_11180 PF04546 Sigma-70, non-essential region HPY06_11180 PF04542 Sigma-70 region 2 HPY06_11195 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY06_11200 PF01380 SIS domain HPY06_11205 PF08220 DeoR-like helix-turn-helix domain HPY06_11205 PF00455 DeoR C terminal sensor domain HPY06_11210 PF00224 Pyruvate kinase, barrel domain HPY06_11210 PF02887 Pyruvate kinase, alpha/beta domain HPY06_11215 PF04402 Protein of unknown function (DUF541) HPY06_11220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_11220 PF03466 LysR substrate binding domain HPY06_11225 PF01810 LysE type translocator HPY06_11230 PF00924 Mechanosensitive ion channel HPY06_11230 PF05552 Conserved TM helix HPY06_11235 PF01116 Fructose-bisphosphate aldolase class-II HPY06_11240 PF00162 Phosphoglycerate kinase HPY06_11245 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY06_11245 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY06_11250 PF00593 TonB dependent receptor HPY06_11250 PF07715 TonB-dependent Receptor Plug Domain HPY06_11255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_11255 PF03466 LysR substrate binding domain HPY06_11260 PF00456 Transketolase, thiamine diphosphate binding domain HPY06_11260 PF02779 Transketolase, pyrimidine binding domain HPY06_11260 PF02780 Transketolase, C-terminal domain HPY06_11265 PF00438 S-adenosylmethionine synthetase, N-terminal domain HPY06_11265 PF02772 S-adenosylmethionine synthetase, central domain HPY06_11265 PF02773 S-adenosylmethionine synthetase, C-terminal domain HPY06_11270 PF10263 SprT-like family HPY06_11270 PF17283 SprT-like zinc ribbon domain HPY06_11275 PF04231 Endonuclease I HPY06_11280 PF04452 RNA methyltransferase HPY06_11285 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HPY06_11285 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HPY06_11290 PF02622 Uncharacterized ACR, COG1678 HPY06_11295 PF03652 Holliday junction resolvase HPY06_11300 PF00579 tRNA synthetases class I (W and Y) HPY06_11300 PF01479 S4 domain HPY06_11310 PF00437 Type II/IV secretion system protein HPY06_11315 PF00437 Type II/IV secretion system protein HPY06_11320 PF01168 Alanine racemase, N-terminal domain HPY06_11325 PF14748 Pyrroline-5-carboxylate reductase dimerisation HPY06_11325 PF03807 NADP oxidoreductase coenzyme F420-dependent HPY06_11330 PF02325 YGGT family HPY06_11335 PF02594 Uncharacterised ACR, YggU family COG1872 HPY06_11345 PF01725 Ham1 family HPY06_11350 PF06969 HemN C-terminal domain HPY06_11350 PF04055 Radical SAM superfamily HPY06_11355 PF04960 Glutaminase HPY06_11360 PF02390 Putative methyltransferase HPY06_11365 PF00633 Helix-hairpin-helix motif HPY06_11365 PF14815 NUDIX domain HPY06_11365 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY06_11365 PF10576 Iron-sulfur binding domain of endonuclease III HPY06_11370 PF04362 Bacterial Fe(2+) trafficking HPY06_11375 PF01464 Transglycosylase SLT domain HPY06_11375 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HPY06_11400 PF12729 Four helix bundle sensory module for signal transduction HPY06_11400 PF00672 HAMP domain HPY06_11400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_11430 PF00226 DnaJ domain HPY06_11430 PF05099 Tellurite resistance protein TerB HPY06_11435 PF03968 OstA-like protein HPY06_11435 PF04453 LPS transport system D HPY06_11440 PF09312 SurA N-terminal domain HPY06_11445 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HPY06_11450 PF00398 Ribosomal RNA adenine dimethylase HPY06_11455 PF04379 ApaG domain HPY06_11460 PF00149 Calcineurin-like phosphoesterase HPY06_11465 PF00186 Dihydrofolate reductase HPY06_11470 PF12821 Threonine/Serine exporter, ThrE HPY06_11475 PF06738 Putative threonine/serine exporter HPY06_11480 PF01018 GTP1/OBG HPY06_11480 PF01926 50S ribosome-binding GTPase HPY06_11485 PF01016 Ribosomal L27 protein HPY06_11490 PF00829 Ribosomal prokaryotic L21 protein HPY06_11495 PF00348 Polyprenyl synthetase HPY06_11500 PF13520 Amino acid permease HPY06_11505 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HPY06_11505 PF00056 lactate/malate dehydrogenase, NAD binding domain HPY06_11510 PF02863 Arginine repressor, C-terminal domain HPY06_11510 PF01316 Arginine repressor, DNA binding domain HPY06_11515 PF16868 NMT1-like family HPY06_11525 PF00582 Universal stress protein family HPY06_11540 PF06877 Regulator of ribonuclease activity B HPY06_11550 PF01523 Putative modulator of DNA gyrase HPY06_11555 PF00795 Carbon-nitrogen hydrolase HPY06_11560 PF13502 AsmA-like C-terminal region HPY06_11560 PF13116 Protein of unknown function HPY06_11565 PF10150 Ribonuclease E/G family HPY06_11565 PF00575 S1 RNA binding domain HPY06_11570 PF02545 Maf-like protein HPY06_11575 PF04093 rod shape-determining protein MreD HPY06_11580 PF04085 rod shape-determining protein MreC HPY06_11615 PF08334 Type II secretion system (T2SS), protein G HPY06_11615 PF07963 Prokaryotic N-terminal methylation motif HPY06_11620 PF07963 Prokaryotic N-terminal methylation motif HPY06_11620 PF00114 Pilin (bacterial filament) HPY06_11630 PF00482 Type II secretion system (T2SS), protein F HPY06_11635 PF00437 Type II/IV secretion system protein HPY06_11645 PF13401 AAA domain HPY06_11645 PF01471 Putative peptidoglycan binding domain HPY06_11650 PF00263 Bacterial type II and III secretion system protein HPY06_11650 PF03958 Bacterial type II/III secretion system short domain HPY06_11670 PF00990 Diguanylate cyclase, GGDEF domain HPY06_11670 PF00563 EAL domain HPY06_11670 PF17157 Gammaproteobacterial periplasmic sensor domain HPY06_11675 PF00436 Single-strand binding protein family HPY06_11680 PF00196 Bacterial regulatory proteins, luxR family HPY06_11685 PF00483 Nucleotidyl transferase HPY06_11690 PF17755 UvrA DNA-binding domain HPY06_11690 PF17760 UvrA interaction domain HPY06_11690 PF00005 ABC transporter HPY06_11700 PF00266 Aminotransferase class-V HPY06_11705 PF00696 Amino acid kinase family HPY06_11705 PF01842 ACT domain HPY06_11710 PF00809 Pterin binding enzyme HPY06_11710 PF02965 Vitamin B12 dependent methionine synthase, activation domain HPY06_11710 PF02310 B12 binding domain HPY06_11710 PF02574 Homocysteine S-methyltransferase HPY06_11710 PF02607 B12 binding domain HPY06_11715 PF00999 Sodium/hydrogen exchanger family HPY06_11785 PF01507 Phosphoadenosine phosphosulfate reductase family HPY06_11790 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HPY06_11790 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HPY06_11795 PF00667 FAD binding domain HPY06_11795 PF00175 Oxidoreductase NAD-binding domain HPY06_11795 PF00258 Flavodoxin HPY06_11815 PF09583 Phage shock protein G (Phageshock_PspG) HPY06_11820 PF01207 Dihydrouridine synthase (Dus) HPY06_11825 PF01475 Ferric uptake regulator family HPY06_11835 PF12706 Beta-lactamase superfamily domain HPY06_11840 PF00342 Phosphoglucose isomerase HPY06_11845 PF01894 Uncharacterised protein family UPF0047 HPY06_11850 PF00842 Alanine racemase, C-terminal domain HPY06_11850 PF01168 Alanine racemase, N-terminal domain HPY06_11855 PF03796 DnaB-like helicase C terminal domain HPY06_11855 PF00772 DnaB-like helicase N terminal domain HPY06_11865 PF03948 Ribosomal protein L9, C-terminal domain HPY06_11865 PF01281 Ribosomal protein L9, N-terminal domain HPY06_11870 PF01084 Ribosomal protein S18 HPY06_11875 PF00436 Single-strand binding protein family HPY06_11880 PF01250 Ribosomal protein S6 HPY06_11885 PF00210 Ferritin-like domain HPY06_11890 PF04324 BFD-like [2Fe-2S] binding domain HPY06_11895 PF00009 Elongation factor Tu GTP binding domain HPY06_11895 PF03144 Elongation factor Tu domain 2 HPY06_11895 PF03143 Elongation factor Tu C-terminal domain HPY06_11900 PF14492 Elongation Factor G, domain II HPY06_11900 PF03764 Elongation factor G, domain IV HPY06_11900 PF00009 Elongation factor Tu GTP binding domain HPY06_11900 PF03144 Elongation factor Tu domain 2 HPY06_11900 PF00679 Elongation factor G C-terminus HPY06_11905 PF00177 Ribosomal protein S7p/S5e HPY06_11910 PF00164 Ribosomal protein S12/S23 HPY06_11920 PF02635 DsrE/DsrF-like family HPY06_11925 PF02635 DsrE/DsrF-like family HPY06_11930 PF08348 YheO-like PAS domain HPY06_11930 PF13309 HTH domain HPY06_11935 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY06_11935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY06_11945 PF04102 SlyX HPY06_11950 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HPY06_11955 PF01145 SPFH domain / Band 7 family HPY06_11960 PF01145 SPFH domain / Band 7 family HPY06_11960 PF12221 Bacterial membrane protein N terminal HPY06_11965 PF01926 50S ribosome-binding GTPase HPY06_11965 PF13167 GTP-binding GTPase N-terminal HPY06_11965 PF16360 GTP-binding GTPase Middle Region HPY06_11970 PF17209 Hfq protein HPY06_11980 PF08676 MutL C terminal dimerisation domain HPY06_11980 PF01119 DNA mismatch repair protein, C-terminal domain HPY06_11985 PF01520 N-acetylmuramoyl-L-alanine amidase HPY06_11990 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HPY06_11995 PF08331 Domain of unknown function (DUF1730) HPY06_12045 PF00929 Exonuclease HPY06_12050 PF03193 RsgA GTPase HPY06_12055 PF02666 Phosphatidylserine decarboxylase HPY06_12060 PF00939 Sodium:sulfate symporter transmembrane region HPY06_12070 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HPY06_12070 PF01676 Metalloenzyme superfamily HPY06_12075 PF01551 Peptidase family M23 HPY06_12085 PF00440 Bacterial regulatory proteins, tetR family HPY06_12085 PF08360 QacR-like protein, C-terminal region HPY06_12090 PF01208 Uroporphyrinogen decarboxylase (URO-D) HPY06_12095 PF00293 NUDIX domain HPY06_12095 PF09297 NADH pyrophosphatase zinc ribbon domain HPY06_12100 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HPY06_12105 PF04983 RNA polymerase Rpb1, domain 3 HPY06_12105 PF05000 RNA polymerase Rpb1, domain 4 HPY06_12105 PF04998 RNA polymerase Rpb1, domain 5 HPY06_12105 PF04997 RNA polymerase Rpb1, domain 1 HPY06_12105 PF00623 RNA polymerase Rpb1, domain 2 HPY06_12110 PF04560 RNA polymerase Rpb2, domain 7 HPY06_12110 PF10385 RNA polymerase beta subunit external 1 domain HPY06_12110 PF04565 RNA polymerase Rpb2, domain 3 HPY06_12110 PF04561 RNA polymerase Rpb2, domain 2 HPY06_12110 PF00562 RNA polymerase Rpb2, domain 6 HPY06_12110 PF04563 RNA polymerase beta subunit HPY06_12115 PF16320 Ribosomal protein L7/L12 dimerisation domain HPY06_12115 PF00542 Ribosomal protein L7/L12 C-terminal domain HPY06_12120 PF00466 Ribosomal protein L10 HPY06_12125 PF00687 Ribosomal protein L1p/L10e family HPY06_12130 PF00298 Ribosomal protein L11, RNA binding domain HPY06_12130 PF03946 Ribosomal protein L11, N-terminal domain HPY06_12135 PF02357 Transcription termination factor nusG HPY06_12135 PF00467 KOW motif HPY06_12140 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HPY06_12145 PF03143 Elongation factor Tu C-terminal domain HPY06_12145 PF03144 Elongation factor Tu domain 2 HPY06_12145 PF00009 Elongation factor Tu GTP binding domain HPY06_12170 PF00485 Phosphoribulokinase / Uridine kinase family HPY06_12175 PF02237 Biotin protein ligase C terminal domain HPY06_12175 PF03099 Biotin/lipoate A/B protein ligase family HPY06_12175 PF08279 HTH domain HPY06_12180 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HPY06_12180 PF01565 FAD binding domain HPY06_12190 PF13091 PLD-like domain HPY06_12225 PF00175 Oxidoreductase NAD-binding domain HPY06_12230 PF00970 Oxidoreductase FAD-binding domain HPY06_12230 PF00175 Oxidoreductase NAD-binding domain HPY06_12230 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY06_12235 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HPY06_12245 PF07498 Rho termination factor, N-terminal domain HPY06_12245 PF07497 Rho termination factor, RNA-binding domain HPY06_12245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY06_12250 PF00085 Thioredoxin HPY06_12255 PF00270 DEAD/DEAH box helicase HPY06_12255 PF00271 Helicase conserved C-terminal domain HPY06_12260 PF02541 Ppx/GppA phosphatase family HPY06_12265 PF00072 Response regulator receiver domain HPY06_12265 PF09456 RcsC Alpha-Beta-Loop (ABL) HPY06_12265 PF00512 His Kinase A (phospho-acceptor) domain HPY06_12265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_12270 PF12832 MFS_1 like family HPY06_12285 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY06_12285 PF13193 AMP-binding enzyme C-terminal domain HPY06_12285 PF00501 AMP-binding enzyme HPY06_12290 PF01220 Dehydroquinase class II HPY06_12295 PF00364 Biotin-requiring enzyme HPY06_12300 PF00289 Biotin carboxylase, N-terminal domain HPY06_12300 PF02785 Biotin carboxylase C-terminal domain HPY06_12300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HPY06_12310 PF01207 Dihydrouridine synthase (Dus) HPY06_12315 PF02954 Bacterial regulatory protein, Fis family HPY06_12320 PF00356 Bacterial regulatory proteins, lacI family HPY06_12320 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY06_12325 PF11647 Membrane Localization Domain HPY06_12330 PF01699 Sodium/calcium exchanger protein HPY06_12335 PF00920 Dehydratase family HPY06_12340 PF01202 Shikimate kinase HPY06_12345 PF02447 GntP family permease HPY06_12350 PF01081 KDPG and KHG aldolase HPY06_12355 PF07715 TonB-dependent Receptor Plug Domain HPY06_12355 PF00593 TonB dependent receptor HPY06_12370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_12370 PF00672 HAMP domain HPY06_12370 PF17200 Single Cache domain 2 HPY06_12375 PF01276 Orn/Lys/Arg decarboxylase, major domain HPY06_12375 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HPY06_12375 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HPY06_12380 PF13520 Amino acid permease HPY06_12385 PF00486 Transcriptional regulatory protein, C terminal HPY06_12385 PF18500 CadC C-terminal domain 1 HPY06_12390 PF13411 MerR HTH family regulatory protein HPY06_12400 PF02142 MGS-like domain HPY06_12400 PF01808 AICARFT/IMPCHase bienzyme HPY06_12405 PF02844 Phosphoribosylglycinamide synthetase, N domain HPY06_12405 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HPY06_12405 PF02843 Phosphoribosylglycinamide synthetase, C domain HPY06_12415 PF00216 Bacterial DNA-binding protein HPY06_12420 PF00571 CBS domain HPY06_12420 PF01595 Cyclin M transmembrane N-terminal domain HPY06_12445 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF HPY06_12455 PF06082 Exopolysaccharide biosynthesis protein YbjH HPY06_12460 PF04222 Protein of unknown function (DUF416) HPY06_12465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY06_12470 PF03167 Uracil DNA glycosylase superfamily HPY06_12475 PF00924 Mechanosensitive ion channel HPY06_12480 PF00753 Metallo-beta-lactamase superfamily HPY06_12480 PF10996 Beta-Casp domain HPY06_12480 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HPY06_12490 PF02397 Bacterial sugar transferase HPY06_12495 PF01370 NAD dependent epimerase/dehydratase family HPY06_12505 PF02350 UDP-N-acetylglucosamine 2-epimerase HPY06_12510 PF01370 NAD dependent epimerase/dehydratase family HPY06_12515 PF08485 Polysaccharide biosynthesis protein C-terminal HPY06_12515 PF02719 Polysaccharide biosynthesis protein HPY06_12520 PF00977 Histidine biosynthesis protein HPY06_12525 PF00117 Glutamine amidotransferase class-I HPY06_12575 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HPY06_12580 PF00132 Bacterial transferase hexapeptide (six repeats) HPY06_12585 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY06_12585 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HPY06_12585 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY06_12595 PF02706 Chain length determinant protein HPY06_12600 PF01370 NAD dependent epimerase/dehydratase family HPY06_12605 PF00457 Glycosyl hydrolases family 11 HPY06_12605 PF01522 Polysaccharide deacetylase HPY06_12625 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY06_12630 PF04488 Glycosyltransferase sugar-binding region containing DXD motif HPY06_12635 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HPY06_12665 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY06_12670 PF00535 Glycosyl transferase family 2 HPY06_12675 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY06_12680 PF01467 Cytidylyltransferase-like HPY06_12685 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HPY06_12685 PF06827 Zinc finger found in FPG and IleRS HPY06_12685 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HPY06_12695 PF00471 Ribosomal protein L33 HPY06_12700 PF00830 Ribosomal L28 family HPY06_12705 PF04002 RadC-like JAB domain HPY06_12710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_12710 PF00672 HAMP domain HPY06_12710 PF02743 Cache domain HPY06_12715 PF02441 Flavoprotein HPY06_12715 PF04127 DNA / pantothenate metabolism flavoprotein HPY06_12725 PF00440 Bacterial regulatory proteins, tetR family HPY06_12730 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY06_12735 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY06_12740 PF00156 Phosphoribosyl transferase domain HPY06_12745 PF01138 3' exoribonuclease family, domain 1 HPY06_12745 PF03725 3' exoribonuclease family, domain 2 HPY06_12750 PF03755 YicC-like family, N-terminal region HPY06_12750 PF08340 Domain of unknown function (DUF1732) HPY06_12755 PF03350 Uncharacterized protein family, UPF0114 HPY06_12760 PF00267 Gram-negative porin HPY06_12765 PF00367 phosphotransferase system, EIIB HPY06_12765 PF02378 Phosphotransferase system, EIIC HPY06_12770 PF13580 SIS domain HPY06_12775 PF01380 SIS domain HPY06_12775 PF01418 Helix-turn-helix domain, rpiR family HPY06_12780 PF01032 FecCD transport family HPY06_12785 PF01497 Periplasmic binding protein HPY06_12790 PF00005 ABC transporter HPY06_12795 PF07715 TonB-dependent Receptor Plug Domain HPY06_12795 PF00593 TonB dependent receptor HPY06_12800 PF00005 ABC transporter HPY06_12800 PF00664 ABC transporter transmembrane region HPY06_12815 PF00270 DEAD/DEAH box helicase HPY06_12815 PF00271 Helicase conserved C-terminal domain HPY06_12815 PF16124 RecQ zinc-binding HPY06_12815 PF09382 RQC domain HPY06_12815 PF00570 HRDC domain HPY06_12820 PF00892 EamA-like transporter family HPY06_12830 PF12833 Helix-turn-helix domain HPY06_12835 PF01810 LysE type translocator HPY06_12840 PF14706 Transposase DNA-binding HPY06_12840 PF02281 Transposase Tn5 dimerisation domain HPY06_12840 PF01609 Transposase DDE domain HPY06_12845 PF13361 UvrD-like helicase C-terminal domain HPY06_12845 PF00580 UvrD/REP helicase N-terminal domain HPY06_12850 PF01432 Peptidase family M3 HPY06_12855 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HPY06_12860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY06_12860 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY06_12870 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY06_12870 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_12880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY06_12885 PF00005 ABC transporter HPY06_12885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY06_12920 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY06_12925 PF00580 UvrD/REP helicase N-terminal domain HPY06_12925 PF13361 UvrD-like helicase C-terminal domain HPY06_12930 PF00440 Bacterial regulatory proteins, tetR family HPY06_12935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY06_12940 PF00873 AcrB/AcrD/AcrF family HPY06_12945 PF04380 Membrane fusogenic activity HPY06_12950 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HPY06_12950 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HPY06_12955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_12955 PF03466 LysR substrate binding domain HPY06_13025 PF12724 Flavodoxin domain HPY06_13030 PF02386 Cation transport protein HPY06_13035 PF09186 Domain of unknown function (DUF1949) HPY06_13035 PF01205 Uncharacterized protein family UPF0029 HPY06_13040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY06_13040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY06_13040 PF00378 Enoyl-CoA hydratase/isomerase HPY06_13045 PF02803 Thiolase, C-terminal domain HPY06_13045 PF00108 Thiolase, N-terminal domain HPY06_13050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_13050 PF03466 LysR substrate binding domain HPY06_13055 PF07690 Major Facilitator Superfamily HPY06_13060 PF12804 MobA-like NTP transferase domain HPY06_13060 PF00132 Bacterial transferase hexapeptide (six repeats) HPY06_13065 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HPY06_13065 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HPY06_13070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY06_13070 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY06_13075 PF00231 ATP synthase HPY06_13080 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY06_13080 PF00306 ATP synthase alpha/beta chain, C terminal domain HPY06_13080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY06_13085 PF00213 ATP synthase delta (OSCP) subunit HPY06_13090 PF00430 ATP synthase B/B' CF(0) HPY06_13095 PF00137 ATP synthase subunit C HPY06_13100 PF00119 ATP synthase A chain HPY06_13105 PF03899 ATP synthase I chain HPY06_13110 PF17762 HTH domain found in ParB protein HPY06_13110 PF02195 ParB-like nuclease domain HPY06_13115 PF13614 AAA domain HPY06_13120 PF02527 rRNA small subunit methyltransferase G HPY06_13125 PF13932 GidA associated domain HPY06_13125 PF01134 Glucose inhibited division protein A HPY06_13130 PF00258 Flavodoxin HPY06_13135 PF10396 GTP-binding protein TrmE N-terminus HPY06_13135 PF12631 MnmE helical domain HPY06_13135 PF01926 50S ribosome-binding GTPase HPY06_13140 PF14849 YidC periplasmic domain HPY06_13140 PF02096 60Kd inner membrane protein HPY06_13145 PF01809 Putative membrane protein insertion efficiency factor HPY06_13150 PF00825 Ribonuclease P HPY06_13155 PF00468 Ribosomal protein L34 HPY06_13160 PF00005 ABC transporter HPY06_13165 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_13170 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY06_13175 PF02195 ParB-like nuclease domain HPY06_13175 PF08775 ParB family HPY06_13180 PF18607 ParA helix turn helix domain HPY06_13180 PF13614 AAA domain HPY06_13205 PF01709 Transcriptional regulator HPY06_13210 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HPY06_13210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY06_13215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_13215 PF17200 Single Cache domain 2 HPY06_13215 PF00672 HAMP domain HPY06_13220 PF10928 Protein of unknown function (DUF2810) HPY06_13225 PF17874 MalT-like TPR region HPY06_13225 PF00196 Bacterial regulatory proteins, luxR family HPY06_13230 PF00343 Carbohydrate phosphorylase HPY06_13235 PF02446 4-alpha-glucanotransferase HPY06_13240 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY06_13240 PF00128 Alpha amylase, catalytic domain HPY06_13240 PF02806 Alpha amylase, C-terminal all-beta domain HPY06_13245 PF05638 Type VI secretion system effector, Hcp HPY06_13250 PF04717 Type VI secretion system, phage-baseplate injector HPY06_13250 PF16671 Actin cross-linking domain HPY06_13275 PF01757 Acyltransferase family HPY06_13275 PF01168 Alanine racemase, N-terminal domain HPY06_13275 PF00842 Alanine racemase, C-terminal domain HPY06_13285 PF00939 Sodium:sulfate symporter transmembrane region HPY06_13290 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY06_13295 PF00704 Glycosyl hydrolases family 18 HPY06_13295 PF08329 Chitinase A, N-terminal domain HPY06_13320 PF01569 PAP2 superfamily HPY06_13325 PF02225 PA domain HPY06_13325 PF04389 Peptidase family M28 HPY06_13330 PF00375 Sodium:dicarboxylate symporter family HPY06_13340 PF02630 SCO1/SenC HPY06_13355 PF03616 Sodium/glutamate symporter HPY06_13360 PF07238 PilZ domain HPY06_13360 PF12945 Flagellar protein YcgR HPY06_13375 PF00529 HlyD membrane-fusion protein of T1SS HPY06_13375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY06_13380 PF11742 Protein of unknown function (DUF3302) HPY06_13385 PF00990 Diguanylate cyclase, GGDEF domain HPY06_13400 PF01048 Phosphorylase superfamily HPY06_13405 PF08349 Protein of unknown function (DUF1722) HPY06_13410 PF13411 MerR HTH family regulatory protein HPY06_13415 PF03441 FAD binding domain of DNA photolyase HPY06_13415 PF00875 DNA photolyase HPY06_13420 PF03734 L,D-transpeptidase catalytic domain HPY06_13420 PF01476 LysM domain HPY06_13420 PF17969 L,D-transpeptidase C-terminal domain HPY06_13430 PF00270 DEAD/DEAH box helicase HPY06_13430 PF00271 Helicase conserved C-terminal domain HPY06_13435 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HPY06_13435 PF00326 Prolyl oligopeptidase family HPY06_13440 PF07715 TonB-dependent Receptor Plug Domain HPY06_13440 PF00593 TonB dependent receptor HPY06_13460 PF12849 PBP superfamily domain HPY06_13465 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_13470 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_13475 PF00005 ABC transporter HPY06_13480 PF00072 Response regulator receiver domain HPY06_13480 PF00990 Diguanylate cyclase, GGDEF domain HPY06_13495 PF00916 Sulfate permease family HPY06_13495 PF01740 STAS domain HPY06_13505 PF01476 LysM domain HPY06_13505 PF01551 Peptidase family M23 HPY06_13505 PF08525 Opacity-associated protein A N-terminal motif HPY06_13510 PF00563 EAL domain HPY06_13510 PF00990 Diguanylate cyclase, GGDEF domain HPY06_13510 PF03707 Bacterial signalling protein N terminal repeat HPY06_13510 PF13188 PAS domain HPY06_13515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_13515 PF03466 LysR substrate binding domain HPY06_13520 PF07690 Major Facilitator Superfamily HPY06_13525 PF09278 MerR, DNA binding HPY06_13525 PF00376 MerR family regulatory protein HPY06_13540 PF00375 Sodium:dicarboxylate symporter family HPY06_13555 PF02001 Protein of unknown function DUF134 HPY06_13580 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY06_13580 PF01447 Thermolysin metallopeptidase, catalytic domain HPY06_13580 PF01483 Proprotein convertase P-domain HPY06_13580 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY06_13590 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HPY06_13590 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HPY06_13595 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY06_13595 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HPY06_13600 PF00581 Rhodanese-like domain HPY06_13605 PF00563 EAL domain HPY06_13605 PF00196 Bacterial regulatory proteins, luxR family HPY06_13610 PF13419 Haloacid dehalogenase-like hydrolase HPY06_13615 PF00916 Sulfate permease family HPY06_13615 PF01740 STAS domain HPY06_13620 PF00849 RNA pseudouridylate synthase HPY06_13680 PF00004 ATPase family associated with various cellular activities (AAA) HPY06_13680 PF07724 AAA domain (Cdc48 subfamily) HPY06_13680 PF10431 C-terminal, D2-small domain, of ClpB protein HPY06_13680 PF17871 AAA lid domain HPY06_13710 PF04717 Type VI secretion system, phage-baseplate injector HPY06_13710 PF16671 Actin cross-linking domain HPY06_13740 PF05025 RbsD / FucU transport protein family HPY06_13745 PF00005 ABC transporter HPY06_13750 PF02653 Branched-chain amino acid transport system / permease component HPY06_13755 PF13407 Periplasmic binding protein domain HPY06_13760 PF00294 pfkB family carbohydrate kinase HPY06_13765 PF00356 Bacterial regulatory proteins, lacI family HPY06_13770 PF04973 Nicotinamide mononucleotide transporter HPY06_13775 PF01048 Phosphorylase superfamily HPY06_13785 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY06_13790 PF07690 Major Facilitator Superfamily HPY06_13805 PF02743 Cache domain HPY06_13805 PF00512 His Kinase A (phospho-acceptor) domain HPY06_13805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_13810 PF00072 Response regulator receiver domain HPY06_13810 PF00158 Sigma-54 interaction domain HPY06_13810 PF02954 Bacterial regulatory protein, Fis family HPY06_13825 PF01266 FAD dependent oxidoreductase HPY06_13830 PF00041 Fibronectin type III domain HPY06_13830 PF12561 ToxR activated gene A lipoprotein domain HPY06_13835 PF01327 Polypeptide deformylase HPY06_13840 PF00175 Oxidoreductase NAD-binding domain HPY06_13840 PF00970 Oxidoreductase FAD-binding domain HPY06_13840 PF00042 Globin HPY06_13845 PF03334 Na+/H+ antiporter subunit HPY06_13850 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) HPY06_13870 PF13244 Domain of unknown function (DUF4040) HPY06_13870 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter HPY06_13870 PF00361 Proton-conducting membrane transporter HPY06_13870 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY06_13880 PF00582 Universal stress protein family HPY06_13885 PF03222 Tryptophan/tyrosine permease family HPY06_13890 PF01212 Beta-eliminating lyase HPY06_13900 PF12843 Putative quorum-sensing-regulated virulence factor HPY06_13910 PF00990 Diguanylate cyclase, GGDEF domain HPY06_13910 PF00563 EAL domain HPY06_13910 PF08448 PAS fold HPY06_13915 PF00313 'Cold-shock' DNA-binding domain HPY06_13930 PF13519 von Willebrand factor type A domain HPY06_13930 PF07584 Aerotolerance regulator N-terminal HPY06_13945 PF01882 Protein of unknown function DUF58 HPY06_13950 PF07726 ATPase family associated with various cellular activities (AAA) HPY06_13950 PF17863 AAA lid domain HPY06_13955 PF02743 Cache domain HPY06_13955 PF00672 HAMP domain HPY06_13955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_13970 PF07662 Na+ dependent nucleoside transporter C-terminus HPY06_13970 PF01773 Na+ dependent nucleoside transporter N-terminus HPY06_13970 PF07670 Nucleoside recognition HPY06_13975 PF07687 Peptidase dimerisation domain HPY06_13975 PF01546 Peptidase family M20/M25/M40 HPY06_13985 PF01590 GAF domain HPY06_13985 PF00158 Sigma-54 interaction domain HPY06_13990 PF00042 Globin HPY06_13990 PF00970 Oxidoreductase FAD-binding domain HPY06_13990 PF00175 Oxidoreductase NAD-binding domain HPY06_13995 PF00313 'Cold-shock' DNA-binding domain HPY06_14000 PF03889 Alternative ribosome-rescue factor A HPY06_14015 PF00072 Response regulator receiver domain HPY06_14025 PF01256 Carbohydrate kinase HPY06_14025 PF03853 YjeF-related protein N-terminus HPY06_14030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY06_14030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY06_14040 PF07885 Ion channel HPY06_14050 PF00478 IMP dehydrogenase / GMP reductase domain HPY06_14055 PF00145 C-5 cytosine-specific DNA methylase HPY06_14080 PF00271 Helicase conserved C-terminal domain HPY06_14080 PF00270 DEAD/DEAH box helicase HPY06_14085 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY06_14090 PF02540 NAD synthase HPY06_14095 PF01467 Cytidylyltransferase-like HPY06_14100 PF11849 Domain of unknown function (DUF3369) HPY06_14110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_14110 PF00512 His Kinase A (phospho-acceptor) domain HPY06_14110 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY06_14120 PF03553 Na+/H+ antiporter family HPY06_14125 PF07690 Major Facilitator Superfamily HPY06_14135 PF00657 GDSL-like Lipase/Acylhydrolase HPY06_14140 PF16458 Beta-prism lectin HPY06_14140 PF12563 Hemolytic toxin N terminal HPY06_14140 PF07968 Leukocidin/Hemolysin toxin family HPY06_14145 PF00672 HAMP domain HPY06_14145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_14145 PF12729 Four helix bundle sensory module for signal transduction HPY06_14150 PF00561 alpha/beta hydrolase fold HPY06_14155 PF03280 Proteobacterial lipase chaperone protein HPY06_14160 PF05547 Immune inhibitor A peptidase M6 HPY06_14160 PF00801 PKD domain HPY06_14180 PF01032 FecCD transport family HPY06_14185 PF01032 FecCD transport family HPY06_14190 PF00005 ABC transporter HPY06_14195 PF12833 Helix-turn-helix domain HPY06_14200 PF07715 TonB-dependent Receptor Plug Domain HPY06_14200 PF00593 TonB dependent receptor HPY06_14210 PF00871 Acetokinase family HPY06_14225 PF00005 ABC transporter HPY06_14235 PF01032 FecCD transport family HPY06_14245 PF03466 LysR substrate binding domain HPY06_14245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_14250 PF02281 Transposase Tn5 dimerisation domain HPY06_14250 PF14706 Transposase DNA-binding HPY06_14250 PF01609 Transposase DDE domain HPY06_14260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_14260 PF00512 His Kinase A (phospho-acceptor) domain HPY06_14260 PF00672 HAMP domain HPY06_14265 PF00072 Response regulator receiver domain HPY06_14265 PF00486 Transcriptional regulatory protein, C terminal HPY06_14275 PF01261 Xylose isomerase-like TIM barrel HPY06_14280 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY06_14290 PF00596 Class II Aldolase and Adducin N-terminal domain HPY06_14295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY06_14300 PF03611 PTS system sugar-specific permease component HPY06_14305 PF00455 DeoR C terminal sensor domain HPY06_14305 PF08220 DeoR-like helix-turn-helix domain HPY06_14320 PF00132 Bacterial transferase hexapeptide (six repeats) HPY06_14335 PF00486 Transcriptional regulatory protein, C terminal HPY06_14335 PF00072 Response regulator receiver domain HPY06_14340 PF13426 PAS domain HPY06_14340 PF00512 His Kinase A (phospho-acceptor) domain HPY06_14340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_14340 PF00672 HAMP domain HPY06_14340 PF14827 Double sensory domain of two-component sensor kinase HPY06_14365 PF03466 LysR substrate binding domain HPY06_14365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_14370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_14370 PF00672 HAMP domain HPY06_14370 PF02743 Cache domain HPY06_14375 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY06_14380 PF00768 D-alanyl-D-alanine carboxypeptidase HPY06_14380 PF07943 Penicillin-binding protein 5, C-terminal domain HPY06_14395 PF00194 Eukaryotic-type carbonic anhydrase HPY06_14400 PF02347 Glycine cleavage system P-protein HPY06_14405 PF01597 Glycine cleavage H-protein HPY06_14410 PF00464 Serine hydroxymethyltransferase HPY06_14420 PF08669 Glycine cleavage T-protein C-terminal barrel domain HPY06_14420 PF01571 Aminomethyltransferase folate-binding domain HPY06_14425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY06_14425 PF02824 TGS domain HPY06_14425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY06_14425 PF03129 Anticodon binding domain HPY06_14430 PF05198 Translation initiation factor IF-3, N-terminal domain HPY06_14430 PF00707 Translation initiation factor IF-3, C-terminal domain HPY06_14435 PF01632 Ribosomal protein L35 HPY06_14440 PF00453 Ribosomal protein L20 HPY06_14445 PF13495 Phage integrase, N-terminal SAM-like domain HPY06_14445 PF00589 Phage integrase family HPY06_14480 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HPY06_14500 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HPY06_14535 PF13673 Acetyltransferase (GNAT) domain HPY06_14555 PF00583 Acetyltransferase (GNAT) family HPY06_14710 PF09722 Protein of unknown function (DUF2384) HPY06_14810 PF00583 Acetyltransferase (GNAT) family HPY06_14845 PF00583 Acetyltransferase (GNAT) family HPY06_14865 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB HPY06_14870 PF01381 Helix-turn-helix HPY06_14975 PF14602 Hexapeptide repeat of succinyl-transferase HPY06_14975 PF12464 Maltose acetyltransferase HPY06_14975 PF00132 Bacterial transferase hexapeptide (six repeats) HPY06_15075 PF01966 HD domain HPY06_15130 PF04229 GrpB protein HPY06_15150 PF13673 Acetyltransferase (GNAT) domain HPY06_15185 PF13673 Acetyltransferase (GNAT) domain HPY06_15275 PF01043 SecA preprotein cross-linking domain HPY06_15275 PF07516 SecA Wing and Scaffold domain HPY06_15275 PF02810 SEC-C motif HPY06_15275 PF07517 SecA DEAD-like domain HPY06_15295 PF01926 50S ribosome-binding GTPase HPY06_15300 PF02705 K+ potassium transporter HPY06_15305 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HPY06_15305 PF10371 Domain of unknown function HPY06_15305 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HPY06_15305 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HPY06_15305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY06_15310 PF13493 Domain of unknown function (DUF4118) HPY06_15310 PF00512 His Kinase A (phospho-acceptor) domain HPY06_15310 PF02702 Osmosensitive K+ channel His kinase sensor domain HPY06_15310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_15315 PF00072 Response regulator receiver domain HPY06_15315 PF00486 Transcriptional regulatory protein, C terminal HPY06_15320 PF02416 mttA/Hcf106 family HPY06_15325 PF09335 SNARE associated Golgi protein HPY06_15335 PF00563 EAL domain HPY06_15335 PF10388 EAL-domain associated signalling protein domain HPY06_15345 PF01292 Prokaryotic cytochrome b561 HPY06_15350 PF04264 YceI-like domain HPY06_15355 PF01226 Formate/nitrite transporter HPY06_15360 PF03466 LysR substrate binding domain HPY06_15360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_15365 PF06496 Protein of unknown function (DUF1097) HPY06_15370 PF11398 Protein of unknown function (DUF2813) HPY06_15375 PF00149 Calcineurin-like phosphoesterase HPY06_15375 PF02872 5'-nucleotidase, C-terminal domain HPY06_15380 PF03741 Integral membrane protein TerC family HPY06_15390 PF08274 PhnA Zinc-Ribbon HPY06_15390 PF03831 PhnA domain HPY06_15420 PF17151 Periplasmic sensor domain HPY06_15420 PF00990 Diguanylate cyclase, GGDEF domain HPY06_15440 PF17158 Membrane-associated sensor, integral membrane domain HPY06_15440 PF00990 Diguanylate cyclase, GGDEF domain HPY06_15455 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HPY06_15455 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY06_15455 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY06_15460 PF02233 NAD(P) transhydrogenase beta subunit HPY06_15470 PF00072 Response regulator receiver domain HPY06_15470 PF00486 Transcriptional regulatory protein, C terminal HPY06_15485 PF03701 Uncharacterised protein family (UPF0181) HPY06_15500 PF13286 Phosphohydrolase-associated domain HPY06_15500 PF01966 HD domain HPY06_15555 PF01253 Translation initiation factor SUI1 HPY06_15565 PF01820 D-ala D-ala ligase N-terminus HPY06_15565 PF07478 D-ala D-ala ligase C-terminus HPY06_15575 PF13607 Succinyl-CoA ligase like flavodoxin domain HPY06_15575 PF13380 CoA binding domain HPY06_15575 PF00583 Acetyltransferase (GNAT) family HPY06_15580 PF03466 LysR substrate binding domain HPY06_15580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_15585 PF07715 TonB-dependent Receptor Plug Domain HPY06_15585 PF00593 TonB dependent receptor HPY06_15590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY06_15590 PF12793 Sugar transport-related sRNA regulator N-term HPY06_15600 PF03061 Thioesterase superfamily HPY06_15620 PF02798 Glutathione S-transferase, N-terminal domain HPY06_15620 PF00043 Glutathione S-transferase, C-terminal domain HPY06_15635 PF00132 Bacterial transferase hexapeptide (six repeats) HPY06_15635 PF03479 Plants and Prokaryotes Conserved (PCC) domain HPY06_15635 PF12804 MobA-like NTP transferase domain HPY06_15640 PF00005 ABC transporter HPY06_15640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY06_15645 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY06_15645 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_15650 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_15655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY06_15680 PF00854 POT family HPY06_15690 PF07702 UTRA domain HPY06_15690 PF00392 Bacterial regulatory proteins, gntR family HPY06_15695 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_15700 PF00005 ABC transporter HPY06_15710 PF00266 Aminotransferase class-V HPY06_15720 PF13419 Haloacid dehalogenase-like hydrolase HPY06_15725 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY06_15725 PF14760 Rnk N-terminus HPY06_15730 PF13419 Haloacid dehalogenase-like hydrolase HPY06_15745 PF01741 Large-conductance mechanosensitive channel, MscL HPY06_15750 PF01268 Formate--tetrahydrofolate ligase HPY06_15755 PF01641 SelR domain HPY06_15755 PF01625 Peptide methionine sulfoxide reductase HPY06_15760 PF01227 GTP cyclohydrolase I HPY06_15765 PF03453 MoeA N-terminal region (domain I and II) HPY06_15765 PF00994 Probable molybdopterin binding domain HPY06_15765 PF03454 MoeA C-terminal region (domain IV) HPY06_15770 PF00899 ThiF family HPY06_15780 PF00581 Rhodanese-like domain HPY06_15785 PF04198 Putative sugar-binding domain HPY06_15795 PF00923 Transaldolase/Fructose-6-phosphate aldolase HPY06_15800 PF00456 Transketolase, thiamine diphosphate binding domain HPY06_15800 PF02780 Transketolase, C-terminal domain HPY06_15800 PF02779 Transketolase, pyrimidine binding domain HPY06_15830 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY06_15830 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY06_15845 PF06942 GlpM protein HPY06_15855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_15855 PF03466 LysR substrate binding domain HPY06_15860 PF03992 Antibiotic biosynthesis monooxygenase HPY06_15865 PF00881 Nitroreductase family HPY06_15870 PF00873 AcrB/AcrD/AcrF family HPY06_15885 PF04143 Sulphur transport HPY06_15900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY06_15900 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY06_15945 PF00367 phosphotransferase system, EIIB HPY06_15945 PF02378 Phosphotransferase system, EIIC HPY06_15955 PF00251 Glycosyl hydrolases family 32 N-terminal domain HPY06_15955 PF08244 Glycosyl hydrolases family 32 C terminal HPY06_15960 PF00294 pfkB family carbohydrate kinase HPY06_15965 PF01266 FAD dependent oxidoreductase HPY06_15965 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HPY06_15970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_15970 PF00672 HAMP domain HPY06_15975 PF13488 Glycine zipper HPY06_15975 PF00691 OmpA family HPY06_15980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY06_15980 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY06_15985 PF01797 Transposase IS200 like HPY06_16050 PF02567 Phenazine biosynthesis-like protein HPY06_16060 PF01381 Helix-turn-helix HPY06_16065 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB HPY06_16070 PF12833 Helix-turn-helix domain HPY06_16070 PF01965 DJ-1/PfpI family HPY06_16085 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HPY06_16115 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system HPY06_16120 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system HPY06_16145 PF08212 Lipocalin-like domain HPY06_16170 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HPY06_16180 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HPY06_16215 PF00293 NUDIX domain HPY06_16245 PF01381 Helix-turn-helix HPY06_16250 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB HPY06_16270 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HPY06_16325 PF08378 Nuclease-related domain HPY06_16360 PF00561 alpha/beta hydrolase fold HPY06_16435 PF02016 LD-carboxypeptidase N-terminal domain HPY06_16435 PF17676 LD-carboxypeptidase C-terminal domain HPY06_16470 PF02492 CobW/HypB/UreG, nucleotide-binding domain HPY06_16470 PF07683 Cobalamin synthesis protein cobW C-terminal domain HPY06_16475 PF00654 Voltage gated chloride channel HPY06_16485 PF00155 Aminotransferase class I and II HPY06_16490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_16490 PF00072 Response regulator receiver domain HPY06_16495 PF13476 AAA domain HPY06_16500 PF12320 Type 5 capsule protein repressor C-terminal domain HPY06_16500 PF00149 Calcineurin-like phosphoesterase HPY06_16505 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY06_16505 PF00356 Bacterial regulatory proteins, lacI family HPY06_16510 PF00381 PTS HPr component phosphorylation site HPY06_16510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY06_16515 PF00294 pfkB family carbohydrate kinase HPY06_16520 PF02378 Phosphotransferase system, EIIC HPY06_16520 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY06_16525 PF08443 RimK-like ATP-grasp domain HPY06_16525 PF18030 RimK PreATP-grasp domain HPY06_16530 PF00155 Aminotransferase class I and II HPY06_16540 PF13597 Anaerobic ribonucleoside-triphosphate reductase HPY06_16540 PF03477 ATP cone domain HPY06_16550 PF13419 Haloacid dehalogenase-like hydrolase HPY06_16555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_16555 PF00672 HAMP domain HPY06_16555 PF12729 Four helix bundle sensory module for signal transduction HPY06_16560 PF03606 C4-dicarboxylate anaerobic carrier HPY06_16565 PF03315 Serine dehydratase beta chain HPY06_16565 PF03313 Serine dehydratase alpha chain HPY06_16570 PF00072 Response regulator receiver domain HPY06_16570 PF00196 Bacterial regulatory proteins, luxR family HPY06_16575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_16575 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HPY06_16575 PF07730 Histidine kinase HPY06_16575 PF00672 HAMP domain HPY06_16580 PF12838 4Fe-4S dicluster domain HPY06_16580 PF13187 4Fe-4S dicluster domain HPY06_16590 PF00384 Molybdopterin oxidoreductase HPY06_16590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY06_16590 PF01568 Molydopterin dinucleotide binding domain HPY06_16595 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HPY06_16600 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY06_16610 PF01966 HD domain HPY06_16615 PF00196 Bacterial regulatory proteins, luxR family HPY06_16615 PF00072 Response regulator receiver domain HPY06_16620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_16620 PF07730 Histidine kinase HPY06_16620 PF05231 MASE1 HPY06_16625 PF07690 Major Facilitator Superfamily HPY06_16635 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_16640 PF08402 TOBE domain HPY06_16640 PF00005 ABC transporter HPY06_16645 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HPY06_16655 PF00108 Thiolase, N-terminal domain HPY06_16655 PF02803 Thiolase, C-terminal domain HPY06_16660 PF00106 short chain dehydrogenase HPY06_16665 PF02355 Protein export membrane protein HPY06_16665 PF07549 SecD/SecF GG Motif HPY06_16670 PF07549 SecD/SecF GG Motif HPY06_16670 PF13721 SecD export protein N-terminal TM region HPY06_16670 PF02355 Protein export membrane protein HPY06_16685 PF00990 Diguanylate cyclase, GGDEF domain HPY06_16685 PF17158 Membrane-associated sensor, integral membrane domain HPY06_16690 PF00483 Nucleotidyl transferase HPY06_16695 PF00704 Glycosyl hydrolases family 18 HPY06_16695 PF06483 Chitinase C HPY06_16700 PF00465 Iron-containing alcohol dehydrogenase HPY06_16710 PF14532 Sigma-54 interaction domain HPY06_16710 PF02954 Bacterial regulatory protein, Fis family HPY06_16710 PF00072 Response regulator receiver domain HPY06_16715 PF02743 Cache domain HPY06_16715 PF00512 His Kinase A (phospho-acceptor) domain HPY06_16715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_16725 PF07690 Major Facilitator Superfamily HPY06_16730 PF00224 Pyruvate kinase, barrel domain HPY06_16730 PF02887 Pyruvate kinase, alpha/beta domain HPY06_16735 PF00672 HAMP domain HPY06_16735 PF00072 Response regulator receiver domain HPY06_16735 PF00512 His Kinase A (phospho-acceptor) domain HPY06_16735 PF01627 Hpt domain HPY06_16735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_16740 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY06_16745 PF02142 MGS-like domain HPY06_16750 PF00857 Isochorismatase family HPY06_16755 PF01219 Prokaryotic diacylglycerol kinase HPY06_16770 PF12462 DNA helicase IV / RNA helicase N terminal HPY06_16770 PF13361 UvrD-like helicase C-terminal domain HPY06_16770 PF00580 UvrD/REP helicase N-terminal domain HPY06_16775 PF12805 FUSC-like inner membrane protein yccS HPY06_16780 PF13188 PAS domain HPY06_16780 PF00072 Response regulator receiver domain HPY06_16780 PF00512 His Kinase A (phospho-acceptor) domain HPY06_16780 PF08448 PAS fold HPY06_16780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_16805 PF03459 TOBE domain HPY06_16805 PF00005 ABC transporter HPY06_16810 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_16820 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY06_16820 PF07685 CobB/CobQ-like glutamine amidotransferase domain HPY06_16860 PF12833 Helix-turn-helix domain HPY06_16860 PF02311 AraC-like ligand binding domain HPY06_16865 PF07715 TonB-dependent Receptor Plug Domain HPY06_16865 PF00593 TonB dependent receptor HPY06_16870 PF07690 Major Facilitator Superfamily HPY06_16875 PF08242 Methyltransferase domain HPY06_16875 PF00550 Phosphopantetheine attachment site HPY06_16875 PF00668 Condensation domain HPY06_16875 PF00501 AMP-binding enzyme HPY06_16880 PF00501 AMP-binding enzyme HPY06_16880 PF13193 AMP-binding enzyme C-terminal domain HPY06_16880 PF00668 Condensation domain HPY06_16880 PF00550 Phosphopantetheine attachment site HPY06_16895 PF00425 chorismate binding enzyme HPY06_16900 PF13193 AMP-binding enzyme C-terminal domain HPY06_16900 PF00501 AMP-binding enzyme HPY06_16905 PF02028 BCCT, betaine/carnitine/choline family transporter HPY06_16910 PF13977 BetI-type transcriptional repressor, C-terminal HPY06_16910 PF00440 Bacterial regulatory proteins, tetR family HPY06_16915 PF00171 Aldehyde dehydrogenase family HPY06_16920 PF00732 GMC oxidoreductase HPY06_16920 PF05199 GMC oxidoreductase HPY06_16925 PF00005 ABC transporter HPY06_16925 PF00664 ABC transporter transmembrane region HPY06_16930 PF00664 ABC transporter transmembrane region HPY06_16930 PF00005 ABC transporter HPY06_16940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_16940 PF00512 His Kinase A (phospho-acceptor) domain HPY06_16940 PF09308 LuxQ, periplasmic HPY06_16940 PF00072 Response regulator receiver domain HPY06_16945 PF13407 Periplasmic binding protein domain HPY06_16955 PF01541 GIY-YIG catalytic domain HPY06_16960 PF04337 Protein of unknown function, DUF480 HPY06_16970 PF04363 Protein of unknown function (DUF496) HPY06_16980 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HPY06_16980 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HPY06_16985 PF00230 Major intrinsic protein HPY06_16990 PF04324 BFD-like [2Fe-2S] binding domain HPY06_16990 PF01266 FAD dependent oxidoreductase HPY06_16995 PF00890 FAD binding domain HPY06_17000 PF13183 4Fe-4S dicluster domain HPY06_17000 PF02754 Cysteine-rich domain HPY06_17005 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY06_17005 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY06_17010 PF00085 Thioredoxin HPY06_17015 PF07690 Major Facilitator Superfamily HPY06_17035 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_17040 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_17045 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY06_17050 PF00005 ABC transporter HPY06_17060 PF05762 VWA domain containing CoxE-like protein HPY06_17065 PF17868 AAA lid domain HPY06_17065 PF07728 AAA domain (dynein-related subfamily) HPY06_17065 PF12592 Protein of unknown function (DUF3763) HPY06_17070 PF00293 NUDIX domain HPY06_17075 PF01212 Beta-eliminating lyase HPY06_17080 PF00034 Cytochrome c HPY06_17085 PF00440 Bacterial regulatory proteins, tetR family HPY06_17085 PF08361 MAATS-type transcriptional repressor, C-terminal region HPY06_17090 PF00271 Helicase conserved C-terminal domain HPY06_17090 PF00270 DEAD/DEAH box helicase HPY06_17095 PF04336 Acyl carrier protein phosphodiesterase HPY06_17100 PF03222 Tryptophan/tyrosine permease family HPY06_17105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_17105 PF12729 Four helix bundle sensory module for signal transduction HPY06_17105 PF00672 HAMP domain HPY06_17110 PF16363 GDP-mannose 4,6 dehydratase HPY06_17115 PF03746 LamB/YcsF family HPY06_17125 PF02626 Carboxyltransferase domain, subdomain A and B HPY06_17135 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY06_17135 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY06_17145 PF00005 ABC transporter HPY06_17150 PF13472 GDSL-like Lipase/Acylhydrolase family HPY06_17155 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY06_17155 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY06_17155 PF07055 Enoyl reductase FAD binding domain HPY06_17160 PF00563 EAL domain HPY06_17160 PF00990 Diguanylate cyclase, GGDEF domain HPY06_17160 PF00498 FHA domain HPY06_17170 PF00226 DnaJ domain HPY06_17170 PF01556 DnaJ C terminal domain HPY06_17170 PF00684 DnaJ central domain HPY06_17185 PF13419 Haloacid dehalogenase-like hydrolase HPY06_17200 PF00294 pfkB family carbohydrate kinase HPY06_17210 PF03880 DbpA RNA binding domain HPY06_17210 PF00270 DEAD/DEAH box helicase HPY06_17210 PF00271 Helicase conserved C-terminal domain HPY06_17215 PF00773 RNB domain HPY06_17215 PF08206 Ribonuclease B OB domain HPY06_17215 PF00575 S1 RNA binding domain HPY06_17225 PF12849 PBP superfamily domain HPY06_17230 PF01575 MaoC like domain HPY06_17235 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HPY06_17240 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HPY06_17240 PF18416 N-acetylglucosamine binding protein domain 2 HPY06_17245 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY06_17245 PF03413 Peptidase propeptide and YPEB domain HPY06_17245 PF01447 Thermolysin metallopeptidase, catalytic domain HPY06_17245 PF04151 Bacterial pre-peptidase C-terminal domain HPY06_17245 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY06_17250 PF04389 Peptidase family M28 HPY06_17250 PF04151 Bacterial pre-peptidase C-terminal domain HPY06_17255 PF00491 Arginase family HPY06_17260 PF17810 Arginine decarboxylase helical bundle domain HPY06_17260 PF17944 Arginine decarboxylase C-terminal helical extension HPY06_17260 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY06_17270 PF01769 Divalent cation transporter HPY06_17270 PF00571 CBS domain HPY06_17270 PF03448 MgtE intracellular N domain HPY06_17280 PF13840 ACT domain HPY06_17280 PF00696 Amino acid kinase family HPY06_17285 PF06339 Ectoine synthase HPY06_17290 PF00202 Aminotransferase class-III HPY06_17295 PF00583 Acetyltransferase (GNAT) family HPY06_17300 PF01329 Pterin 4 alpha carbinolamine dehydratase HPY06_17305 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HPY06_17310 PF00501 AMP-binding enzyme HPY06_17310 PF13193 AMP-binding enzyme C-terminal domain HPY06_17330 PF03466 LysR substrate binding domain HPY06_17330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_17340 PF00892 EamA-like transporter family HPY06_17345 PF14602 Hexapeptide repeat of succinyl-transferase HPY06_17345 PF00132 Bacterial transferase hexapeptide (six repeats) HPY06_17345 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal HPY06_17350 PF03471 Transporter associated domain HPY06_17350 PF01595 Cyclin M transmembrane N-terminal domain HPY06_17350 PF00571 CBS domain HPY06_17355 PF02566 OsmC-like protein HPY06_17360 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY06_17365 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY06_17365 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY06_17385 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY06_17390 PF13520 Amino acid permease HPY06_17395 PF00990 Diguanylate cyclase, GGDEF domain HPY06_17405 PF00072 Response regulator receiver domain HPY06_17405 PF04397 LytTr DNA-binding domain HPY06_17410 PF07694 5TMR of 5TMR-LYT HPY06_17410 PF06580 Histidine kinase HPY06_17410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_17410 PF13492 GAF domain HPY06_17425 PF00005 ABC transporter HPY06_17425 PF02687 FtsX-like permease family HPY06_17425 PF12704 MacB-like periplasmic core domain HPY06_17430 PF00005 ABC transporter HPY06_17440 PF00248 Aldo/keto reductase family HPY06_17445 PF00128 Alpha amylase, catalytic domain HPY06_17455 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY06_17460 PF12262 Bacterial virulence factor lipase N-terminal HPY06_17465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_17465 PF08447 PAS fold HPY06_17465 PF13426 PAS domain HPY06_17470 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY06_17470 PF03413 Peptidase propeptide and YPEB domain HPY06_17470 PF01447 Thermolysin metallopeptidase, catalytic domain HPY06_17470 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY06_17470 PF04151 Bacterial pre-peptidase C-terminal domain HPY06_17475 PF03922 OmpW family HPY06_17485 PF00768 D-alanyl-D-alanine carboxypeptidase HPY06_17490 PF17876 Cold shock domain HPY06_17490 PF00575 S1 RNA binding domain HPY06_17490 PF08461 Ribonuclease R winged-helix domain HPY06_17490 PF08206 Ribonuclease B OB domain HPY06_17490 PF00773 RNB domain HPY06_17495 PF00313 'Cold-shock' DNA-binding domain HPY06_17505 PF00291 Pyridoxal-phosphate dependent enzyme HPY06_17510 PF03466 LysR substrate binding domain HPY06_17510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_17520 PF01979 Amidohydrolase family HPY06_17555 PF00107 Zinc-binding dehydrogenase HPY06_17555 PF08240 Alcohol dehydrogenase GroES-like domain HPY06_17560 PF00155 Aminotransferase class I and II HPY06_17575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_17575 PF03466 LysR substrate binding domain HPY06_17580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY06_17605 PF01966 HD domain HPY06_17610 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HPY06_17610 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HPY06_17615 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HPY06_17620 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HPY06_17620 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY06_17645 PF02595 Glycerate kinase family HPY06_17650 PF02447 GntP family permease HPY06_17655 PF05651 Putative sugar diacid recognition HPY06_17655 PF17853 GGDEF-like domain HPY06_17655 PF13556 PucR C-terminal helix-turn-helix domain HPY06_17660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_17660 PF00672 HAMP domain HPY06_17665 PF01243 Pyridoxamine 5'-phosphate oxidase HPY06_17670 PF06228 Haem utilisation ChuX/HutX HPY06_17675 PF04055 Radical SAM superfamily HPY06_17680 PF03544 Gram-negative bacterial TonB protein C-terminal HPY06_17685 PF01618 MotA/TolQ/ExbB proton channel family HPY06_17690 PF02472 Biopolymer transport protein ExbD/TolR HPY06_17695 PF01497 Periplasmic binding protein HPY06_17700 PF01032 FecCD transport family HPY06_17705 PF00005 ABC transporter HPY06_17735 PF00672 HAMP domain HPY06_17735 PF02743 Cache domain HPY06_17735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_17740 PF03473 MOSC domain HPY06_17740 PF03476 MOSC N-terminal beta barrel domain HPY06_17740 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY06_17740 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY06_17740 PF03473 MOSC domain HPY06_17740 PF03476 MOSC N-terminal beta barrel domain HPY06_17745 PF01979 Amidohydrolase family HPY06_17750 PF05958 tRNA (Uracil-5-)-methyltransferase HPY06_17755 PF05661 Protein of unknown function (DUF808) HPY06_17760 PF00990 Diguanylate cyclase, GGDEF domain HPY06_17760 PF17151 Periplasmic sensor domain HPY06_17770 PF00313 'Cold-shock' DNA-binding domain HPY06_17795 PF08448 PAS fold HPY06_17795 PF00990 Diguanylate cyclase, GGDEF domain HPY06_17800 PF00455 DeoR C terminal sensor domain HPY06_17800 PF08220 DeoR-like helix-turn-helix domain HPY06_17815 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_17820 PF14785 Maltose transport system permease protein MalF P2 domain HPY06_17820 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_17825 PF01547 Bacterial extracellular solute-binding protein HPY06_17830 PF00005 ABC transporter HPY06_17830 PF08402 TOBE domain HPY06_17835 PF13302 Acetyltransferase (GNAT) domain HPY06_17850 PF01906 Putative heavy-metal-binding HPY06_17855 PF00196 Bacterial regulatory proteins, luxR family HPY06_17865 PF00072 Response regulator receiver domain HPY06_17865 PF01584 CheW-like domain HPY06_17870 PF01047 MarR family HPY06_17890 PF00563 EAL domain HPY06_17890 PF00990 Diguanylate cyclase, GGDEF domain HPY06_17890 PF03707 Bacterial signalling protein N terminal repeat HPY06_17910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_17910 PF03466 LysR substrate binding domain HPY06_17915 PF00563 EAL domain HPY06_17915 PF00990 Diguanylate cyclase, GGDEF domain HPY06_17925 PF02678 Pirin HPY06_17925 PF05726 Pirin C-terminal cupin domain HPY06_17930 PF06865 Pyrimidine/purine nucleoside phosphorylase HPY06_17940 PF07690 Major Facilitator Superfamily HPY06_17945 PF17200 Single Cache domain 2 HPY06_17945 PF00672 HAMP domain HPY06_17945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_17950 PF13654 AAA domain HPY06_17950 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY06_17960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY06_17960 PF00005 ABC transporter HPY06_17965 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY06_17970 PF00672 HAMP domain HPY06_17970 PF17200 Single Cache domain 2 HPY06_17970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_17980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_17980 PF03466 LysR substrate binding domain HPY06_17990 PF02652 L-lactate permease HPY06_17995 PF01070 FMN-dependent dehydrogenase HPY06_18005 PF03618 Kinase/pyrophosphorylase HPY06_18010 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HPY06_18010 PF00391 PEP-utilising enzyme, mobile domain HPY06_18010 PF02896 PEP-utilising enzyme, TIM barrel domain HPY06_18015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_18015 PF08447 PAS fold HPY06_18020 PF01554 MatE HPY06_18035 PF03475 3-alpha domain HPY06_18035 PF03473 MOSC domain HPY06_18040 PF00270 DEAD/DEAH box helicase HPY06_18040 PF00271 Helicase conserved C-terminal domain HPY06_18045 PF03786 D-mannonate dehydratase (UxuA) HPY06_18050 PF00392 Bacterial regulatory proteins, gntR family HPY06_18050 PF07729 FCD domain HPY06_18055 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY06_18060 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HPY06_18065 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY06_18070 PF08125 Mannitol dehydrogenase C-terminal domain HPY06_18070 PF01232 Mannitol dehydrogenase Rossmann domain HPY06_18075 PF02614 Glucuronate isomerase HPY06_18080 PF00294 pfkB family carbohydrate kinase HPY06_18085 PF01081 KDPG and KHG aldolase HPY06_18090 PF10688 Bacterial inner membrane protein HPY06_18095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_18095 PF03466 LysR substrate binding domain HPY06_18105 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY06_18115 PF00005 ABC transporter HPY06_18115 PF00664 ABC transporter transmembrane region HPY06_18125 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY06_18135 PF01810 LysE type translocator HPY06_18140 PF12833 Helix-turn-helix domain HPY06_18155 PF01557 Fumarylacetoacetate (FAA) hydrolase family HPY06_18160 PF01047 MarR family HPY06_18165 PF02566 OsmC-like protein HPY06_18170 PF13609 Gram-negative porin HPY06_18175 PF00892 EamA-like transporter family HPY06_18180 PF00462 Glutaredoxin HPY06_18185 PF07670 Nucleoside recognition HPY06_18190 PF07670 Nucleoside recognition HPY06_18195 PF03600 Citrate transporter HPY06_18205 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY06_18205 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HPY06_18210 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY06_18210 PF06029 AlkA N-terminal domain HPY06_18215 PF07681 DoxX HPY06_18220 PF03466 LysR substrate binding domain HPY06_18220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_18240 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HPY06_18250 PF07148 Maltose operon periplasmic protein precursor (MalM) HPY06_18255 PF02264 LamB porin HPY06_18260 PF00128 Alpha amylase, catalytic domain HPY06_18260 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY06_18270 PF12729 Four helix bundle sensory module for signal transduction HPY06_18270 PF00672 HAMP domain HPY06_18270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_18280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_18280 PF00672 HAMP domain HPY06_18285 PF00990 Diguanylate cyclase, GGDEF domain HPY06_18285 PF05230 MASE2 domain HPY06_18295 PF00793 DAHP synthetase I family HPY06_18300 PF00005 ABC transporter HPY06_18305 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_18310 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY06_18315 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_18320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY06_18320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY06_18320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY06_18320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY06_18325 PF02378 Phosphotransferase system, EIIC HPY06_18325 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY06_18325 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY06_18330 PF08125 Mannitol dehydrogenase C-terminal domain HPY06_18330 PF01232 Mannitol dehydrogenase Rossmann domain HPY06_18335 PF05068 Mannitol repressor HPY06_18340 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY06_18370 PF13460 NAD(P)H-binding HPY06_18375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_18375 PF03466 LysR substrate binding domain HPY06_18380 PF02743 Cache domain HPY06_18380 PF00672 HAMP domain HPY06_18380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_18385 PF00106 short chain dehydrogenase HPY06_18390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY06_18390 PF03466 LysR substrate binding domain HPY06_18395 PF04013 Putative SAM-dependent RNA methyltransferase HPY06_18400 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY06_18405 PF13520 Amino acid permease HPY06_18410 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HPY06_18410 PF01276 Orn/Lys/Arg decarboxylase, major domain HPY06_18410 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HPY06_18420 PF00196 Bacterial regulatory proteins, luxR family HPY06_18420 PF03472 Autoinducer binding domain HPY06_18440 PF00171 Aldehyde dehydrogenase family HPY06_18445 PF01037 Lrp/AsnC ligand binding domain HPY06_18450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_18450 PF00672 HAMP domain HPY06_18450 PF02743 Cache domain HPY06_18460 PF00474 Sodium:solute symporter family HPY06_18470 PF00171 Aldehyde dehydrogenase family HPY06_18470 PF01619 Proline dehydrogenase HPY06_18470 PF14850 DNA-binding domain of Proline dehydrogenase HPY06_18470 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HPY06_18475 PF12833 Helix-turn-helix domain HPY06_18485 PF03781 Sulfatase-modifying factor enzyme 1 HPY06_18490 PF00196 Bacterial regulatory proteins, luxR family HPY06_18490 PF00072 Response regulator receiver domain HPY06_18495 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HPY06_18495 PF01243 Pyridoxamine 5'-phosphate oxidase HPY06_18500 PF00529 HlyD membrane-fusion protein of T1SS HPY06_18515 PF03412 Peptidase C39 family HPY06_18515 PF00664 ABC transporter transmembrane region HPY06_18515 PF00005 ABC transporter HPY06_18525 PF00072 Response regulator receiver domain HPY06_18525 PF00990 Diguanylate cyclase, GGDEF domain HPY06_18535 PF02743 Cache domain HPY06_18535 PF00672 HAMP domain HPY06_18535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_18540 PF00072 Response regulator receiver domain HPY06_18540 PF01339 CheB methylesterase HPY06_18545 PF03975 CheD chemotactic sensory transduction HPY06_18550 PF01739 CheR methyltransferase, SAM binding domain HPY06_18550 PF03705 CheR methyltransferase, all-alpha domain HPY06_18555 PF02203 Tar ligand binding domain homologue HPY06_18555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY06_18555 PF00672 HAMP domain HPY06_18560 PF01584 CheW-like domain HPY06_18565 PF01584 CheW-like domain HPY06_18570 PF09078 CheY binding HPY06_18570 PF02895 Signal transducing histidine kinase, homodimeric domain HPY06_18570 PF01584 CheW-like domain HPY06_18570 PF01627 Hpt domain HPY06_18570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_18575 PF00072 Response regulator receiver domain HPY06_18590 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_18595 PF00528 Binding-protein-dependent transport system inner membrane component HPY06_18595 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY06_18600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY06_18600 PF00005 ABC transporter HPY06_18605 PF00884 Sulfatase HPY06_18605 PF08019 Phosphoethanolamine transferase EptA/EptB HPY06_18610 PF08521 Two-component sensor kinase N-terminal HPY06_18610 PF00512 His Kinase A (phospho-acceptor) domain HPY06_18610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY06_18615 PF00072 Response regulator receiver domain HPY06_18615 PF00486 Transcriptional regulatory protein, C terminal HPY06_18635 PF00501 AMP-binding enzyme HPY06_18645 PF05127 Helicase HPY06_18645 PF13718 GNAT acetyltransferase 2 HPY06_18650 PF13416 Bacterial extracellular solute-binding protein