locus-tag class description HPY07_00005 PF11638 DnaA N-terminal domain HPY07_00005 PF00308 Bacterial dnaA protein HPY07_00005 PF08299 Bacterial dnaA protein helix-turn-helix HPY07_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HPY07_00010 PF02767 DNA polymerase III beta subunit, central domain HPY07_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HPY07_00015 PF02463 RecF/RecN/SMC N terminal domain HPY07_00020 PF01751 Toprim domain HPY07_00020 PF00986 DNA gyrase B subunit, carboxyl terminus HPY07_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_00020 PF00204 DNA gyrase B HPY07_00020 PF18053 DNA gyrase B subunit insert domain HPY07_00030 PF00011 Hsp20/alpha crystallin family HPY07_00035 PF00155 Aminotransferase class I and II HPY07_00040 PF05746 DALR anticodon binding domain HPY07_00040 PF02092 Glycyl-tRNA synthetase beta subunit HPY07_00045 PF02091 Glycyl-tRNA synthetase alpha subunit HPY07_00050 PF01169 Uncharacterized protein family UPF0016 HPY07_00060 PF01206 Sulfurtransferase TusA HPY07_00070 PF00107 Zinc-binding dehydrogenase HPY07_00070 PF08240 Alcohol dehydrogenase GroES-like domain HPY07_00075 PF00585 C-terminal regulatory domain of Threonine dehydratase HPY07_00075 PF00291 Pyridoxal-phosphate dependent enzyme HPY07_00080 PF00920 Dehydratase family HPY07_00085 PF01063 Amino-transferase class IV HPY07_00095 PF00205 Thiamine pyrophosphate enzyme, central domain HPY07_00095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY07_00095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY07_00100 PF01078 Magnesium chelatase, subunit ChlI HPY07_00100 PF13335 Magnesium chelatase, subunit ChlI C-terminal HPY07_00105 PF01553 Acyltransferase HPY07_00110 PF01323 DSBA-like thioredoxin domain HPY07_00115 PF01636 Phosphotransferase enzyme family HPY07_00120 PF13746 4Fe-4S dicluster domain HPY07_00120 PF12801 4Fe-4S binding domain HPY07_00120 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HPY07_00125 PF06288 Protein of unknown function (DUF1040) HPY07_00130 PF07070 SpoOM protein HPY07_00135 PF03006 Haemolysin-III related HPY07_00145 PF02386 Cation transport protein HPY07_00150 PF02080 TrkA-C domain HPY07_00150 PF02254 TrkA-N domain HPY07_00155 PF01189 16S rRNA methyltransferase RsmB/F HPY07_00155 PF01029 NusB family HPY07_00160 PF02911 Formyl transferase, C-terminal domain HPY07_00160 PF00551 Formyl transferase HPY07_00165 PF01327 Polypeptide deformylase HPY07_00170 PF01476 LysM domain HPY07_00175 PF02481 DNA recombination-mediator protein A HPY07_00175 PF17782 DprA winged helix domain HPY07_00180 PF04361 Protein of unknown function (DUF494) HPY07_00185 PF01396 Topoisomerase DNA binding C4 zinc finger HPY07_00190 PF02222 ATP-grasp domain HPY07_00190 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HPY07_00195 PF00731 AIR carboxylase HPY07_00200 PF01300 Telomere recombination HPY07_00205 PF01218 Coproporphyrinogen III oxidase HPY07_00210 PF01488 Shikimate / quinate 5-dehydrogenase HPY07_00210 PF08501 Shikimate dehydrogenase substrate binding domain HPY07_00210 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HPY07_00220 PF00132 Bacterial transferase hexapeptide (six repeats) HPY07_00255 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HPY07_00260 PF13667 ThiC-associated domain HPY07_00260 PF01964 Radical SAM ThiC family HPY07_00265 PF02581 Thiamine monophosphate synthase HPY07_00270 PF00899 ThiF family HPY07_00275 PF02597 ThiS family HPY07_00280 PF05690 Thiazole biosynthesis protein ThiG HPY07_00285 PF06968 Biotin and Thiamin Synthesis associated domain HPY07_00285 PF04055 Radical SAM superfamily HPY07_00290 PF01321 Creatinase/Prolidase N-terminal domain HPY07_00290 PF01321 Creatinase/Prolidase N-terminal domain HPY07_00290 PF00557 Metallopeptidase family M24 HPY07_00290 PF00557 Metallopeptidase family M24 HPY07_00295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_00295 PF03466 LysR substrate binding domain HPY07_00300 PF07690 Major Facilitator Superfamily HPY07_00310 PF01037 Lrp/AsnC ligand binding domain HPY07_00315 PF00990 Diguanylate cyclase, GGDEF domain HPY07_00315 PF00563 EAL domain HPY07_00315 PF08448 PAS fold HPY07_00320 PF04445 Putative SAM-dependent methyltransferase HPY07_00330 PF00892 EamA-like transporter family HPY07_00335 PF00582 Universal stress protein family HPY07_00340 PF00210 Ferritin-like domain HPY07_00345 PF10625 Universal stress protein B (UspB) HPY07_00360 PF02646 RmuC family HPY07_00365 PF01209 ubiE/COQ5 methyltransferase family HPY07_00370 PF02036 SCP-2 sterol transfer family HPY07_00375 PF03109 ABC1 family HPY07_00380 PF02416 mttA/Hcf106 family HPY07_00385 PF02416 mttA/Hcf106 family HPY07_00390 PF00902 Sec-independent protein translocase protein (TatC) HPY07_00395 PF00034 Cytochrome c HPY07_00395 PF03150 Di-haem cytochrome c peroxidase HPY07_00400 PF01554 MatE HPY07_00410 PF01726 LexA DNA binding domain HPY07_00410 PF00717 Peptidase S24-like HPY07_00415 PF01553 Acyltransferase HPY07_00420 PF01040 UbiA prenyltransferase family HPY07_00425 PF04345 Chorismate lyase HPY07_00430 PF03748 Flagellar basal body-associated protein FliL HPY07_00435 PF08447 PAS fold HPY07_00435 PF13426 PAS domain HPY07_00435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_00440 PF01694 Rhomboid family HPY07_00440 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HPY07_00445 PF00581 Rhodanese-like domain HPY07_00450 PF01026 TatD related DNase HPY07_00455 PF00490 Delta-aminolevulinic acid dehydratase HPY07_00465 PF00476 DNA polymerase family A HPY07_00465 PF01612 3'-5' exonuclease HPY07_00465 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY07_00465 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY07_00470 PF01926 50S ribosome-binding GTPase HPY07_00475 PF00034 Cytochrome c HPY07_00485 PF04220 Der GTPase activator (YihI) HPY07_00490 PF10675 Protein of unknown function (DUF2489) HPY07_00495 PF06969 HemN C-terminal domain HPY07_00495 PF04055 Radical SAM superfamily HPY07_00500 PF07219 HemY protein N-terminus HPY07_00505 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HPY07_00510 PF02602 Uroporphyrinogen-III synthase HemD HPY07_00515 PF03900 Porphobilinogen deaminase, C-terminal domain HPY07_00515 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HPY07_00520 PF01295 Adenylate cyclase, class-I HPY07_00520 PF12633 Adenylate cyclase NT domain HPY07_00525 PF01491 Frataxin-like domain HPY07_00535 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY07_00535 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HPY07_00540 PF01678 Diaminopimelate epimerase HPY07_00545 PF04340 Protein of unknown function, DUF484 HPY07_00550 PF02899 Phage integrase, N-terminal SAM-like domain HPY07_00550 PF00589 Phage integrase family HPY07_00555 PF13419 Haloacid dehalogenase-like hydrolase HPY07_00560 PF00990 Diguanylate cyclase, GGDEF domain HPY07_00560 PF10442 FIST C domain HPY07_00560 PF00563 EAL domain HPY07_00560 PF08495 FIST N domain HPY07_00580 PF12146 Serine aminopeptidase, S33 HPY07_00585 PF01810 LysE type translocator HPY07_00590 PF00563 EAL domain HPY07_00590 PF08668 HDOD domain HPY07_00595 PF00210 Ferritin-like domain HPY07_00630 PF00448 SRP54-type protein, GTPase domain HPY07_00630 PF02881 SRP54-type protein, helical bundle domain HPY07_00635 PF00005 ABC transporter HPY07_00640 PF18075 FtsX extracellular domain HPY07_00645 PF04542 Sigma-70 region 2 HPY07_00645 PF04545 Sigma-70, region 4 HPY07_00645 PF00140 Sigma-70 factor, region 1.2 HPY07_00650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY07_00650 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY07_00655 PF00440 Bacterial regulatory proteins, tetR family HPY07_00665 PF05958 tRNA (Uracil-5-)-methyltransferase HPY07_00670 PF07715 TonB-dependent Receptor Plug Domain HPY07_00670 PF00593 TonB dependent receptor HPY07_00675 PF04151 Bacterial pre-peptidase C-terminal domain HPY07_00675 PF05922 Peptidase inhibitor I9 HPY07_00675 PF00082 Subtilase family HPY07_00680 PF01177 Asp/Glu/Hydantoin racemase HPY07_00750 PF00962 Adenosine/AMP deaminase HPY07_00755 PF00563 EAL domain HPY07_00755 PF03707 Bacterial signalling protein N terminal repeat HPY07_00755 PF13188 PAS domain HPY07_00755 PF00990 Diguanylate cyclase, GGDEF domain HPY07_00760 PF02954 Bacterial regulatory protein, Fis family HPY07_00760 PF00158 Sigma-54 interaction domain HPY07_00760 PF00072 Response regulator receiver domain HPY07_00765 PF00512 His Kinase A (phospho-acceptor) domain HPY07_00765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_00765 PF00989 PAS fold HPY07_00775 PF00120 Glutamine synthetase, catalytic domain HPY07_00775 PF03951 Glutamine synthetase, beta-Grasp domain HPY07_00795 PF03631 Virulence factor BrkB HPY07_00800 PF02580 D-Tyr-tRNA(Tyr) deacylase HPY07_00805 PF09500 Putative thioesterase (yiiD_Cterm) HPY07_00805 PF00583 Acetyltransferase (GNAT) family HPY07_00815 PF01293 Phosphoenolpyruvate carboxykinase HPY07_00820 PF01430 Hsp33 protein HPY07_00825 PF01479 S4 domain HPY07_00830 PF11356 Type II secretion system protein C HPY07_00835 PF00263 Bacterial type II and III secretion system protein HPY07_00835 PF03958 Bacterial type II/III secretion system short domain HPY07_00840 PF00437 Type II/IV secretion system protein HPY07_00845 PF00482 Type II secretion system (T2SS), protein F HPY07_00850 PF07963 Prokaryotic N-terminal methylation motif HPY07_00850 PF08334 Type II secretion system (T2SS), protein G HPY07_00855 PF12019 Type II transport protein GspH HPY07_00860 PF02501 Type II secretion system (T2SS), protein I HPY07_00860 PF07963 Prokaryotic N-terminal methylation motif HPY07_00865 PF11612 Type II secretion system (T2SS), protein J HPY07_00865 PF07963 Prokaryotic N-terminal methylation motif HPY07_00870 PF03934 Type II secretion system (T2SS), protein K HPY07_00875 PF05134 Type II secretion system (T2SS), protein L HPY07_00875 PF12693 GspL periplasmic domain HPY07_00880 PF04612 Type II secretion system (T2SS), protein M HPY07_00885 PF01203 Type II secretion system (T2SS), protein N HPY07_00890 PF00459 Inositol monophosphatase family HPY07_00895 PF00293 NUDIX domain HPY07_00900 PF01106 NifU-like domain HPY07_00900 PF01521 Iron-sulphur cluster biosynthesis HPY07_00905 PF00156 Phosphoribosyl transferase domain HPY07_00915 PF00561 alpha/beta hydrolase fold HPY07_00925 PF17674 HHH domain HPY07_00925 PF00575 S1 RNA binding domain HPY07_00925 PF16921 Tex protein YqgF-like domain HPY07_00925 PF09371 Tex-like protein N-terminal domain HPY07_00930 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY07_00930 PF03449 Transcription elongation factor, N-terminal HPY07_00940 PF00072 Response regulator receiver domain HPY07_00940 PF00486 Transcriptional regulatory protein, C terminal HPY07_00945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_00945 PF00512 His Kinase A (phospho-acceptor) domain HPY07_00945 PF00672 HAMP domain HPY07_00950 PF00860 Permease family HPY07_00955 PF17191 RecG wedge domain HPY07_00955 PF00270 DEAD/DEAH box helicase HPY07_00955 PF00271 Helicase conserved C-terminal domain HPY07_00960 PF02824 TGS domain HPY07_00960 PF04607 Region found in RelA / SpoT proteins HPY07_00960 PF13291 ACT domain HPY07_00965 PF01192 RNA polymerase Rpb6 HPY07_00970 PF00625 Guanylate kinase HPY07_00975 PF02592 Putative vitamin uptake transporter HPY07_00980 PF00474 Sodium:solute symporter family HPY07_00990 PF03471 Transporter associated domain HPY07_00990 PF02080 TrkA-C domain HPY07_00990 PF00999 Sodium/hydrogen exchanger family HPY07_00995 PF00072 Response regulator receiver domain HPY07_00995 PF00196 Bacterial regulatory proteins, luxR family HPY07_01000 PF02683 Cytochrome C biogenesis protein transmembrane region HPY07_01000 PF11412 Disulphide bond corrector protein DsbC HPY07_01005 PF17967 Pullulanase N2 domain HPY07_01005 PF18494 Pullulanase Ins domain HPY07_01005 PF03714 Bacterial pullanase-associated domain HPY07_01005 PF11852 Domain of unknown function (DUF3372) HPY07_01005 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY07_01010 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY07_01015 PF00206 Lyase HPY07_01015 PF10415 Fumarase C C-terminus HPY07_01020 PF17158 Membrane-associated sensor, integral membrane domain HPY07_01020 PF00990 Diguanylate cyclase, GGDEF domain HPY07_01025 PF04186 FxsA cytoplasmic membrane protein HPY07_01030 PF00588 SpoU rRNA Methylase family HPY07_01035 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY07_01035 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY07_01040 PF00672 HAMP domain HPY07_01040 PF16527 Two-component sensor protein CpxA, periplasmic domain HPY07_01040 PF00512 His Kinase A (phospho-acceptor) domain HPY07_01040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_01045 PF00072 Response regulator receiver domain HPY07_01045 PF00486 Transcriptional regulatory protein, C terminal HPY07_01055 PF01545 Cation efflux family HPY07_01055 PF16916 Dimerisation domain of Zinc Transporter HPY07_01060 PF00365 Phosphofructokinase HPY07_01065 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HPY07_01070 PF06005 Cell division protein ZapB HPY07_01075 PF02219 Methylenetetrahydrofolate reductase HPY07_01080 PF00742 Homoserine dehydrogenase HPY07_01080 PF03447 Homoserine dehydrogenase, NAD binding domain HPY07_01080 PF00696 Amino acid kinase family HPY07_01085 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY07_01090 PF01340 Met Apo-repressor, MetJ HPY07_01095 PF00390 Malic enzyme, N-terminal domain HPY07_01095 PF03949 Malic enzyme, NAD binding domain HPY07_01100 PF01197 Ribosomal protein L31 HPY07_01105 PF00271 Helicase conserved C-terminal domain HPY07_01105 PF00270 DEAD/DEAH box helicase HPY07_01105 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HPY07_01105 PF17764 3′ DNA-binding domain (3′BD) HPY07_01105 PF18074 Primosomal protein N C-terminal domain HPY07_01110 PF00356 Bacterial regulatory proteins, lacI family HPY07_01115 PF05036 Sporulation related domain HPY07_01120 PF00227 Proteasome subunit HPY07_01125 PF10431 C-terminal, D2-small domain, of ClpB protein HPY07_01125 PF07724 AAA domain (Cdc48 subfamily) HPY07_01125 PF00004 ATPase family associated with various cellular activities (AAA) HPY07_01130 PF01040 UbiA prenyltransferase family HPY07_01135 PF03737 Aldolase/RraA HPY07_01140 PF01554 MatE HPY07_01145 PF00121 Triosephosphate isomerase HPY07_01165 PF08220 DeoR-like helix-turn-helix domain HPY07_01165 PF00455 DeoR C terminal sensor domain HPY07_01170 PF00166 Chaperonin 10 Kd subunit HPY07_01175 PF00118 TCP-1/cpn60 chaperonin family HPY07_01185 PF04055 Radical SAM superfamily HPY07_01190 PF01132 Elongation factor P (EF-P) OB domain HPY07_01190 PF08207 Elongation factor P (EF-P) KOW-like domain HPY07_01190 PF09285 Elongation factor P, C-terminal HPY07_01195 PF02313 Fumarate reductase subunit D HPY07_01200 PF02300 Fumarate reductase subunit C HPY07_01205 PF13183 4Fe-4S dicluster domain HPY07_01205 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY07_01210 PF02910 Fumarate reductase flavoprotein C-term HPY07_01210 PF00890 FAD binding domain HPY07_01215 PF00152 tRNA synthetases class II (D, K and N) HPY07_01220 PF00581 Rhodanese-like domain HPY07_01225 PF02556 Preprotein translocase subunit SecB HPY07_01230 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HPY07_01230 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HPY07_01235 PF06426 Serine acetyltransferase, N-terminal HPY07_01235 PF00132 Bacterial transferase hexapeptide (six repeats) HPY07_01245 PF00311 Phosphoenolpyruvate carboxylase HPY07_01250 PF01546 Peptidase family M20/M25/M40 HPY07_01250 PF07687 Peptidase dimerisation domain HPY07_01255 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY07_01255 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY07_01260 PF00696 Amino acid kinase family HPY07_01265 PF00764 Arginosuccinate synthase HPY07_01270 PF00206 Lyase HPY07_01270 PF14698 Argininosuccinate lyase C-terminal HPY07_01280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY07_01280 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY07_01285 PF08534 Redoxin HPY07_01285 PF00462 Glutaredoxin HPY07_01290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_01290 PF03466 LysR substrate binding domain HPY07_01295 PF17092 Penicillin-binding protein OB-like domain HPY07_01295 PF00905 Penicillin binding protein transpeptidase domain HPY07_01295 PF00912 Transglycosylase HPY07_01320 PF03958 Bacterial type II/III secretion system short domain HPY07_01320 PF11741 AMIN domain HPY07_01320 PF07660 Secretin and TonB N terminus short domain HPY07_01320 PF00263 Bacterial type II and III secretion system protein HPY07_01325 PF01202 Shikimate kinase HPY07_01330 PF01761 3-dehydroquinate synthase HPY07_01340 PF02086 D12 class N6 adenine-specific DNA methyltransferase HPY07_01345 PF00834 Ribulose-phosphate 3 epimerase family HPY07_01350 PF13419 Haloacid dehalogenase-like hydrolase HPY07_01355 PF00579 tRNA synthetases class I (W and Y) HPY07_01375 PF18693 TRAM domain HPY07_01375 PF00919 Uncharacterized protein family UPF0004 HPY07_01375 PF04055 Radical SAM superfamily HPY07_01380 PF00117 Glutamine amidotransferase class-I HPY07_01385 PF00202 Aminotransferase class-III HPY07_01390 PF04958 Arginine N-succinyltransferase beta subunit HPY07_01395 PF00171 Aldehyde dehydrogenase family HPY07_01405 PF00027 Cyclic nucleotide-binding domain HPY07_01405 PF13545 Crp-like helix-turn-helix domain HPY07_01410 PF00485 Phosphoribulokinase / Uridine kinase family HPY07_01415 PF06794 Uncharacterised protein family (UPF0270) HPY07_01420 PF00561 alpha/beta hydrolase fold HPY07_01430 PF12848 ABC transporter HPY07_01430 PF00005 ABC transporter HPY07_01435 PF02525 Flavodoxin-like fold HPY07_01440 PF02254 TrkA-N domain HPY07_01440 PF00999 Sodium/hydrogen exchanger family HPY07_01450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY07_01455 PF01112 Asparaginase HPY07_01460 PF00709 Adenylosuccinate synthetase HPY07_01465 PF08238 Sel1 repeat HPY07_01470 PF11893 Domain of unknown function (DUF3413) HPY07_01470 PF00884 Sulfatase HPY07_01475 PF17876 Cold shock domain HPY07_01475 PF08206 Ribonuclease B OB domain HPY07_01475 PF08461 Ribonuclease R winged-helix domain HPY07_01475 PF00773 RNB domain HPY07_01475 PF00575 S1 RNA binding domain HPY07_01480 PF00588 SpoU rRNA Methylase family HPY07_01480 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY07_01485 PF00338 Ribosomal protein S10p/S20e HPY07_01490 PF00297 Ribosomal protein L3 HPY07_01495 PF00573 Ribosomal protein L4/L1 family HPY07_01500 PF00276 Ribosomal protein L23 HPY07_01505 PF03947 Ribosomal Proteins L2, C-terminal domain HPY07_01505 PF00181 Ribosomal Proteins L2, RNA binding domain HPY07_01510 PF00203 Ribosomal protein S19 HPY07_01515 PF00237 Ribosomal protein L22p/L17e HPY07_01520 PF07650 KH domain HPY07_01520 PF00189 Ribosomal protein S3, C-terminal domain HPY07_01525 PF00252 Ribosomal protein L16p/L10e HPY07_01530 PF00831 Ribosomal L29 protein HPY07_01535 PF00366 Ribosomal protein S17 HPY07_01540 PF00238 Ribosomal protein L14p/L23e HPY07_01545 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HPY07_01545 PF00467 KOW motif HPY07_01550 PF00673 ribosomal L5P family C-terminus HPY07_01550 PF00281 Ribosomal protein L5 HPY07_01555 PF00253 Ribosomal protein S14p/S29e HPY07_01560 PF00410 Ribosomal protein S8 HPY07_01565 PF00347 Ribosomal protein L6 HPY07_01570 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HPY07_01575 PF03719 Ribosomal protein S5, C-terminal domain HPY07_01575 PF00333 Ribosomal protein S5, N-terminal domain HPY07_01580 PF00327 Ribosomal protein L30p/L7e HPY07_01585 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HPY07_01590 PF00344 SecY translocase HPY07_01595 PF00444 Ribosomal protein L36 HPY07_01600 PF00416 Ribosomal protein S13/S18 HPY07_01605 PF00411 Ribosomal protein S11 HPY07_01610 PF01479 S4 domain HPY07_01610 PF00163 Ribosomal protein S4/S9 N-terminal domain HPY07_01615 PF01000 RNA polymerase Rpb3/RpoA insert domain HPY07_01615 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HPY07_01615 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HPY07_01620 PF01196 Ribosomal protein L17 HPY07_01630 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY07_01630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY07_01635 PF04225 Opacity-associated protein A LysM-like domain HPY07_01635 PF08525 Opacity-associated protein A N-terminal motif HPY07_01640 PF00892 EamA-like transporter family HPY07_01645 PF13673 Acetyltransferase (GNAT) domain HPY07_01650 PF03880 DbpA RNA binding domain HPY07_01650 PF00271 Helicase conserved C-terminal domain HPY07_01650 PF00270 DEAD/DEAH box helicase HPY07_01660 PF00149 Calcineurin-like phosphoesterase HPY07_01660 PF02872 5'-nucleotidase, C-terminal domain HPY07_01665 PF10414 Sirohaem synthase dimerisation region HPY07_01665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY07_01665 PF14824 Sirohaem biosynthesis protein central HPY07_01670 PF01507 Phosphoadenosine phosphosulfate reductase family HPY07_01675 PF00009 Elongation factor Tu GTP binding domain HPY07_01700 PF00005 ABC transporter HPY07_01710 PF10795 Protein of unknown function (DUF2607) HPY07_01715 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HPY07_01720 PF01625 Peptide methionine sulfoxide reductase HPY07_01725 PF07244 Surface antigen variable number repeat HPY07_01725 PF01103 Surface antigen HPY07_01725 PF17243 POTRA domain TamA domain 1 HPY07_01730 PF04357 TamB, inner membrane protein subunit of TAM complex HPY07_01735 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like HPY07_01740 PF00719 Inorganic pyrophosphatase HPY07_01745 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HPY07_01750 PF01225 Mur ligase family, catalytic domain HPY07_01750 PF02875 Mur ligase family, glutamate ligase domain HPY07_01750 PF08245 Mur ligase middle domain HPY07_01755 PF02441 Flavoprotein HPY07_01765 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_01770 PF00005 ABC transporter HPY07_01775 PF04751 Protein of unknown function (DUF615) HPY07_01780 PF01523 Putative modulator of DNA gyrase HPY07_01785 PF00571 CBS domain HPY07_01785 PF01769 Divalent cation transporter HPY07_01785 PF03448 MgtE intracellular N domain HPY07_01790 PF00381 PTS HPr component phosphorylation site HPY07_01795 PF03668 P-loop ATPase protein family HPY07_01800 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY07_01805 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY07_01810 PF00309 Sigma-54 factor, Activator interacting domain (AID) HPY07_01810 PF04963 Sigma-54 factor, core binding domain HPY07_01810 PF04552 Sigma-54, DNA binding domain HPY07_01815 PF00005 ABC transporter HPY07_01815 PF12399 Branched-chain amino acid ATP-binding cassette transporter HPY07_01820 PF03968 OstA-like protein HPY07_01835 PF00571 CBS domain HPY07_01835 PF01380 SIS domain HPY07_01840 PF01699 Sodium/calcium exchanger protein HPY07_01845 PF00005 ABC transporter HPY07_01850 PF02405 Permease MlaE HPY07_01855 PF02470 MlaD protein HPY07_01860 PF05494 MlaC protein HPY07_01870 PF01722 BolA-like protein HPY07_01875 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY07_01880 PF01553 Acyltransferase HPY07_01885 PF14706 Transposase DNA-binding HPY07_01885 PF02281 Transposase Tn5 dimerisation domain HPY07_01885 PF01609 Transposase DDE domain HPY07_01890 PF01042 Endoribonuclease L-PSP HPY07_01895 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HPY07_01895 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HPY07_01900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY07_01900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY07_01905 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY07_01905 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY07_01910 PF02562 PhoH-like protein HPY07_01910 PF13638 PIN domain HPY07_01915 PF00176 SNF2 family N-terminal domain HPY07_01915 PF18337 RapA N-terminal Tudor like domain HPY07_01915 PF18339 RapA N-terminal Tudor like domain 1 HPY07_01915 PF12137 RNA polymerase recycling family C-terminal HPY07_01915 PF00271 Helicase conserved C-terminal domain HPY07_01920 PF00849 RNA pseudouridylate synthase HPY07_01925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY07_01925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY07_01930 PF10458 Valyl tRNA synthetase tRNA binding arm HPY07_01930 PF00133 tRNA synthetases class I (I, L, M and V) HPY07_01930 PF08264 Anticodon-binding domain of tRNA HPY07_01935 PF04364 DNA polymerase III chi subunit, HolC HPY07_01940 PF02789 Cytosol aminopeptidase family, N-terminal domain HPY07_01940 PF00883 Cytosol aminopeptidase family, catalytic domain HPY07_01945 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY07_01950 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY07_01965 PF00072 Response regulator receiver domain HPY07_02005 PF00694 Aconitase C-terminal domain HPY07_02010 PF00330 Aconitase family (aconitate hydratase) HPY07_02015 PF00180 Isocitrate/isopropylmalate dehydrogenase HPY07_02020 PF08502 LeuA allosteric (dimerisation) domain HPY07_02020 PF00682 HMGL-like HPY07_02025 PF01569 PAP2 superfamily HPY07_02035 PF03466 LysR substrate binding domain HPY07_02035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_02040 PF00501 AMP-binding enzyme HPY07_02045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY07_02045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY07_02045 PF00205 Thiamine pyrophosphate enzyme, central domain HPY07_02050 PF10369 Small subunit of acetolactate synthase HPY07_02055 PF01842 ACT domain HPY07_02055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY07_02055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY07_02060 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HPY07_02065 PF01812 5-formyltetrahydrofolate cyclo-ligase family HPY07_02075 PF05164 Cell division protein ZapA HPY07_02080 PF03695 Uncharacterised protein family (UPF0149) HPY07_02085 PF01494 FAD binding domain HPY07_02090 PF01494 FAD binding domain HPY07_02095 PF14706 Transposase DNA-binding HPY07_02095 PF01609 Transposase DDE domain HPY07_02095 PF02281 Transposase Tn5 dimerisation domain HPY07_02110 PF03937 Flavinator of succinate dehydrogenase HPY07_02120 PF00890 FAD binding domain HPY07_02120 PF02910 Fumarate reductase flavoprotein C-term HPY07_02125 PF04542 Sigma-70 region 2 HPY07_02125 PF08281 Sigma-70, region 4 HPY07_02130 PF03873 Anti sigma-E protein RseA, C-terminal domain HPY07_02130 PF03872 Anti sigma-E protein RseA, N-terminal domain HPY07_02135 PF17188 MucB/RseB C-terminal domain HPY07_02135 PF03888 MucB/RseB N-terminal domain HPY07_02145 PF00679 Elongation factor G C-terminus HPY07_02145 PF00009 Elongation factor Tu GTP binding domain HPY07_02145 PF03144 Elongation factor Tu domain 2 HPY07_02145 PF06421 GTP-binding protein LepA C-terminus HPY07_02150 PF10502 Signal peptidase, peptidase S26 HPY07_02155 PF14622 Ribonuclease-III-like HPY07_02155 PF00035 Double-stranded RNA binding motif HPY07_02160 PF01926 50S ribosome-binding GTPase HPY07_02160 PF07650 KH domain HPY07_02165 PF02565 Recombination protein O C terminal HPY07_02165 PF11967 Recombination protein O N terminal HPY07_02170 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HPY07_02175 PF01648 4'-phosphopantetheinyl transferase superfamily HPY07_02190 PF00990 Diguanylate cyclase, GGDEF domain HPY07_02195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_02195 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY07_02195 PF00072 Response regulator receiver domain HPY07_02195 PF00512 His Kinase A (phospho-acceptor) domain HPY07_02195 PF00672 HAMP domain HPY07_02195 PF01627 Hpt domain HPY07_02200 PF01938 TRAM domain HPY07_02200 PF05958 tRNA (Uracil-5-)-methyltransferase HPY07_02205 PF04607 Region found in RelA / SpoT proteins HPY07_02205 PF02824 TGS domain HPY07_02205 PF13291 ACT domain HPY07_02210 PF03819 MazG nucleotide pyrophosphohydrolase domain HPY07_02215 PF06418 CTP synthase N-terminus HPY07_02215 PF00117 Glutamine amidotransferase class-I HPY07_02220 PF00113 Enolase, C-terminal TIM barrel domain HPY07_02220 PF03952 Enolase, N-terminal domain HPY07_02225 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY07_02225 PF01966 HD domain HPY07_02225 PF01743 Poly A polymerase head domain HPY07_02230 PF01471 Putative peptidoglycan binding domain HPY07_02230 PF13401 AAA domain HPY07_02240 PF08239 Bacterial SH3 domain HPY07_02245 PF01384 Phosphate transporter family HPY07_02250 PF01865 Protein of unknown function DUF47 HPY07_02255 PF01928 CYTH domain HPY07_02260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_02260 PF02743 Cache domain HPY07_02260 PF00672 HAMP domain HPY07_02265 PF03710 Glutamate-ammonia ligase adenylyltransferase HPY07_02265 PF08335 GlnD PII-uridylyltransferase HPY07_02270 PF01467 Cytidylyltransferase-like HPY07_02270 PF00294 pfkB family carbohydrate kinase HPY07_02275 PF02321 Outer membrane efflux protein HPY07_02280 PF00293 NUDIX domain HPY07_02285 PF06853 Protein of unknown function (DUF1249) HPY07_02290 PF00149 Calcineurin-like phosphoesterase HPY07_02295 PF05728 Uncharacterised protein family (UPF0227) HPY07_02300 PF00986 DNA gyrase B subunit, carboxyl terminus HPY07_02300 PF01751 Toprim domain HPY07_02300 PF00204 DNA gyrase B HPY07_02300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_02305 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY07_02305 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY07_02310 PF03884 DNA gyrase inhibitor YacG HPY07_02315 PF07072 Cell division protein HPY07_02320 PF01121 Dephospho-CoA kinase HPY07_02325 PF06750 Bacterial Peptidase A24 N-terminal domain HPY07_02325 PF01478 Type IV leader peptidase family HPY07_02330 PF00482 Type II secretion system (T2SS), protein F HPY07_02335 PF00437 Type II/IV secretion system protein HPY07_02335 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HPY07_02345 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HPY07_02345 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HPY07_02350 PF01510 N-acetylmuramoyl-L-alanine amidase HPY07_02355 PF14706 Transposase DNA-binding HPY07_02355 PF02281 Transposase Tn5 dimerisation domain HPY07_02355 PF01609 Transposase DDE domain HPY07_02360 PF00258 Flavodoxin HPY07_02365 PF00589 Phage integrase family HPY07_02365 PF02899 Phage integrase, N-terminal SAM-like domain HPY07_02370 PF10411 Disulfide bond isomerase protein N-terminus HPY07_02370 PF13098 Thioredoxin-like domain HPY07_02375 PF02272 DHHA1 domain HPY07_02375 PF01368 DHH family HPY07_02375 PF17768 RecJ OB domain HPY07_02380 PF07729 FCD domain HPY07_02380 PF00392 Bacterial regulatory proteins, gntR family HPY07_02385 PF17831 Pyruvate dehydrogenase E1 component middle domain HPY07_02385 PF00456 Transketolase, thiamine diphosphate binding domain HPY07_02390 PF00364 Biotin-requiring enzyme HPY07_02390 PF02817 e3 binding domain HPY07_02390 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY07_02395 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY07_02395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY07_02405 PF01795 MraW methylase family HPY07_02410 PF04999 Cell division protein FtsL HPY07_02415 PF03717 Penicillin-binding Protein dimerisation domain HPY07_02415 PF00905 Penicillin binding protein transpeptidase domain HPY07_02420 PF01225 Mur ligase family, catalytic domain HPY07_02420 PF02875 Mur ligase family, glutamate ligase domain HPY07_02420 PF08245 Mur ligase middle domain HPY07_02425 PF01225 Mur ligase family, catalytic domain HPY07_02425 PF08245 Mur ligase middle domain HPY07_02425 PF02875 Mur ligase family, glutamate ligase domain HPY07_02430 PF00953 Glycosyl transferase family 4 HPY07_02430 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HPY07_02435 PF08245 Mur ligase middle domain HPY07_02435 PF02875 Mur ligase family, glutamate ligase domain HPY07_02440 PF01098 Cell cycle protein HPY07_02445 PF04101 Glycosyltransferase family 28 C-terminal domain HPY07_02445 PF03033 Glycosyltransferase family 28 N-terminal domain HPY07_02450 PF08245 Mur ligase middle domain HPY07_02450 PF02875 Mur ligase family, glutamate ligase domain HPY07_02450 PF01225 Mur ligase family, catalytic domain HPY07_02455 PF08478 POTRA domain, FtsQ-type HPY07_02455 PF03799 Cell division protein FtsQ HPY07_02460 PF02491 SHS2 domain inserted in FTSA HPY07_02465 PF12327 FtsZ family, C-terminal domain HPY07_02465 PF00091 Tubulin/FtsZ family, GTPase domain HPY07_02470 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HPY07_02480 PF01043 SecA preprotein cross-linking domain HPY07_02480 PF02810 SEC-C motif HPY07_02480 PF07517 SecA DEAD-like domain HPY07_02480 PF07516 SecA Wing and Scaffold domain HPY07_02485 PF00293 NUDIX domain HPY07_02490 PF05173 Dihydrodipicolinate reductase, C-terminus HPY07_02490 PF01113 Dihydrodipicolinate reductase, N-terminus HPY07_02500 PF00117 Glutamine amidotransferase class-I HPY07_02500 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HPY07_02505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HPY07_02505 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HPY07_02505 PF02142 MGS-like domain HPY07_02520 PF01925 Sulfite exporter TauE/SafE HPY07_02525 PF03466 LysR substrate binding domain HPY07_02525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_02530 PF03458 UPF0126 domain HPY07_02535 PF01497 Periplasmic binding protein HPY07_02545 PF01048 Phosphorylase superfamily HPY07_02555 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY07_02555 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY07_02560 PF00310 Glutamine amidotransferases class-II HPY07_02560 PF04898 Glutamate synthase central domain HPY07_02560 PF01645 Conserved region in glutamate synthase HPY07_02560 PF01493 GXGXG motif HPY07_02565 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY07_02565 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY07_02570 PF01493 GXGXG motif HPY07_02570 PF01645 Conserved region in glutamate synthase HPY07_02570 PF00310 Glutamine amidotransferases class-II HPY07_02570 PF04898 Glutamate synthase central domain HPY07_02575 PF16199 Radical_SAM C-terminal domain HPY07_02575 PF04055 Radical SAM superfamily HPY07_02580 PF00563 EAL domain HPY07_02580 PF00990 Diguanylate cyclase, GGDEF domain HPY07_02580 PF01590 GAF domain HPY07_02580 PF00360 Phytochrome region HPY07_02585 PF00072 Response regulator receiver domain HPY07_02585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_02585 PF00989 PAS fold HPY07_02585 PF01627 Hpt domain HPY07_02585 PF00512 His Kinase A (phospho-acceptor) domain HPY07_02585 PF18415 Histidine kinase receptor ArcB trans-membrane domain HPY07_02590 PF00072 Response regulator receiver domain HPY07_02590 PF00486 Transcriptional regulatory protein, C terminal HPY07_02600 PF03737 Aldolase/RraA HPY07_02615 PF00696 Amino acid kinase family HPY07_02615 PF03447 Homoserine dehydrogenase, NAD binding domain HPY07_02615 PF00742 Homoserine dehydrogenase HPY07_02615 PF01842 ACT domain HPY07_02615 PF13840 ACT domain HPY07_02620 PF08544 GHMP kinases C terminal HPY07_02620 PF00288 GHMP kinases N terminal domain HPY07_02625 PF00291 Pyridoxal-phosphate dependent enzyme HPY07_02625 PF14821 Threonine synthase N terminus HPY07_02630 PF01228 Glycine radical HPY07_02635 PF01261 Xylose isomerase-like TIM barrel HPY07_02640 PF03167 Uracil DNA glycosylase superfamily HPY07_02655 PF01235 Sodium:alanine symporter family HPY07_02660 PF03883 Peroxide stress protein YaaA HPY07_02670 PF01026 TatD related DNase HPY07_02675 PF01773 Na+ dependent nucleoside transporter N-terminus HPY07_02675 PF07670 Nucleoside recognition HPY07_02675 PF07662 Na+ dependent nucleoside transporter C-terminus HPY07_02685 PF01791 DeoC/LacD family aldolase HPY07_02690 PF00591 Glycosyl transferase family, a/b domain HPY07_02690 PF02885 Glycosyl transferase family, helical bundle domain HPY07_02690 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HPY07_02695 PF01676 Metalloenzyme superfamily HPY07_02700 PF01048 Phosphorylase superfamily HPY07_02710 PF18429 Domain of unknown function (DUF5609) HPY07_02720 PF18073 Rubredoxin metal binding domain HPY07_02725 PF03764 Elongation factor G, domain IV HPY07_02725 PF14492 Elongation Factor G, domain II HPY07_02725 PF00679 Elongation factor G C-terminus HPY07_02725 PF03144 Elongation factor Tu domain 2 HPY07_02725 PF00009 Elongation factor Tu GTP binding domain HPY07_02730 PF00501 AMP-binding enzyme HPY07_02735 PF00072 Response regulator receiver domain HPY07_02745 PF16353 Domain of unknown function(DUF4981) HPY07_02745 PF02837 Glycosyl hydrolases family 2, sugar binding domain HPY07_02745 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HPY07_02745 PF00703 Glycosyl hydrolases family 2 HPY07_02745 PF02929 Beta galactosidase small chain HPY07_02750 PF00356 Bacterial regulatory proteins, lacI family HPY07_02755 PF01588 Putative tRNA binding domain HPY07_02765 PF01544 CorA-like Mg2+ transporter protein HPY07_02770 PF18030 RimK PreATP-grasp domain HPY07_02770 PF02080 TrkA-C domain HPY07_02770 PF08443 RimK-like ATP-grasp domain HPY07_02775 PF00583 Acetyltransferase (GNAT) family HPY07_02785 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HPY07_02785 PF14602 Hexapeptide repeat of succinyl-transferase HPY07_02790 PF07130 YebG protein HPY07_02805 PF17946 RecC C-terminal domain HPY07_02810 PF13361 UvrD-like helicase C-terminal domain HPY07_02810 PF12705 PD-(D/E)XK nuclease superfamily HPY07_02810 PF00580 UvrD/REP helicase N-terminal domain HPY07_02815 PF13538 UvrD-like helicase C-terminal domain HPY07_02825 PF00583 Acetyltransferase (GNAT) family HPY07_02825 PF00696 Amino acid kinase family HPY07_02835 PF03562 MltA specific insert domain HPY07_02835 PF06725 3D domain HPY07_02840 PF00899 ThiF family HPY07_02845 PF02657 Fe-S metabolism associated domain HPY07_02850 PF00266 Aminotransferase class-V HPY07_02855 PF01965 DJ-1/PfpI family HPY07_02860 PF02558 Ketopantoate reductase PanE/ApbA HPY07_02860 PF08546 Ketopantoate reductase PanE/ApbA C terminal HPY07_02865 PF03502 Nucleoside-specific channel-forming protein, Tsx HPY07_02875 PF04542 Sigma-70 region 2 HPY07_02875 PF04545 Sigma-70, region 4 HPY07_02885 PF07690 Major Facilitator Superfamily HPY07_02890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY07_02900 PF05175 Methyltransferase small domain HPY07_02905 PF01722 BolA-like protein HPY07_02910 PF11973 NQRA C-terminal domain HPY07_02910 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HPY07_02915 PF03116 NQR2, RnfD, RnfE family HPY07_02920 PF04205 FMN-binding domain HPY07_02925 PF02508 Rnf-Nqr subunit, membrane protein HPY07_02930 PF02508 Rnf-Nqr subunit, membrane protein HPY07_02935 PF00175 Oxidoreductase NAD-binding domain HPY07_02935 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY07_02935 PF00970 Oxidoreductase FAD-binding domain HPY07_02940 PF02424 ApbE family HPY07_02950 PF00817 impB/mucB/samB family HPY07_02950 PF11798 IMS family HHH motif HPY07_02960 PF00990 Diguanylate cyclase, GGDEF domain HPY07_02960 PF17158 Membrane-associated sensor, integral membrane domain HPY07_02965 PF00209 Sodium:neurotransmitter symporter family HPY07_02975 PF18030 RimK PreATP-grasp domain HPY07_02975 PF08443 RimK-like ATP-grasp domain HPY07_02980 PF08443 RimK-like ATP-grasp domain HPY07_02980 PF18030 RimK PreATP-grasp domain HPY07_02985 PF07687 Peptidase dimerisation domain HPY07_02985 PF01546 Peptidase family M20/M25/M40 HPY07_02990 PF00860 Permease family HPY07_02995 PF00156 Phosphoribosyl transferase domain HPY07_03005 PF07417 Sigma factor-binding transcriptional regulator Crl HPY07_03010 PF01472 PUA domain HPY07_03010 PF00696 Amino acid kinase family HPY07_03015 PF00171 Aldehyde dehydrogenase family HPY07_03020 PF03477 ATP cone domain HPY07_03025 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY07_03025 PF01872 RibD C-terminal domain HPY07_03030 PF00677 Lumazine binding domain HPY07_03035 PF00925 GTP cyclohydrolase II HPY07_03035 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY07_03040 PF00885 6,7-dimethyl-8-ribityllumazine synthase HPY07_03045 PF01029 NusB family HPY07_03050 PF02769 AIR synthase related protein, C-terminal domain HPY07_03050 PF00586 AIR synthase related protein, N-terminal domain HPY07_03055 PF04608 Phosphatidylglycerophosphatase A HPY07_03060 PF11944 Protein of unknown function (DUF3461) HPY07_03065 PF08335 GlnD PII-uridylyltransferase HPY07_03065 PF01909 Nucleotidyltransferase domain HPY07_03065 PF01966 HD domain HPY07_03070 PF00557 Metallopeptidase family M24 HPY07_03075 PF00318 Ribosomal protein S2 HPY07_03080 PF00889 Elongation factor TS HPY07_03085 PF00696 Amino acid kinase family HPY07_03090 PF01765 Ribosome recycling factor HPY07_03095 PF01255 Putative undecaprenyl diphosphate synthase HPY07_03105 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HPY07_03105 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HPY07_03105 PF13288 DXP reductoisomerase C-terminal domain HPY07_03110 PF17820 PDZ domain HPY07_03110 PF02163 Peptidase family M50 HPY07_03115 PF01103 Surface antigen HPY07_03115 PF07244 Surface antigen variable number repeat HPY07_03120 PF03938 Outer membrane protein (OmpH-like) HPY07_03125 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HPY07_03125 PF00132 Bacterial transferase hexapeptide (six repeats) HPY07_03130 PF07977 FabA-like domain HPY07_03135 PF00132 Bacterial transferase hexapeptide (six repeats) HPY07_03135 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HPY07_03140 PF02684 Lipid-A-disaccharide synthetase HPY07_03145 PF01351 Ribonuclease HII HPY07_03150 PF07733 Bacterial DNA polymerase III alpha NTPase domain HPY07_03150 PF01336 OB-fold nucleic acid binding domain HPY07_03150 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HPY07_03150 PF02811 PHP domain HPY07_03150 PF14579 Helix-hairpin-helix motif HPY07_03155 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HPY07_03160 PF11734 TilS substrate C-terminal domain HPY07_03160 PF09179 TilS substrate binding domain HPY07_03160 PF01171 PP-loop family HPY07_03165 PF00034 Cytochrome c HPY07_03170 PF05870 Phenolic acid decarboxylase (PAD) HPY07_03175 PF00543 Nitrogen regulatory protein P-II HPY07_03180 PF03372 Endonuclease/Exonuclease/phosphatase family HPY07_03185 PF01464 Transglycosylase SLT domain HPY07_03185 PF01476 LysM domain HPY07_03190 PF00753 Metallo-beta-lactamase superfamily HPY07_03190 PF16123 Hydroxyacylglutathione hydrolase C-terminus HPY07_03195 PF08241 Methyltransferase domain HPY07_03200 PF00075 RNase H HPY07_03205 PF00929 Exonuclease HPY07_03215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY07_03215 PF02770 Acyl-CoA dehydrogenase, middle domain HPY07_03215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY07_03215 PF09317 Domain of unknown function (DUF1974) HPY07_03220 PF13580 SIS domain HPY07_03225 PF13230 Glutamine amidotransferases class-II HPY07_03230 PF00551 Formyl transferase HPY07_03235 PF02769 AIR synthase related protein, C-terminal domain HPY07_03235 PF00586 AIR synthase related protein, N-terminal domain HPY07_03245 PF08448 PAS fold HPY07_03245 PF00990 Diguanylate cyclase, GGDEF domain HPY07_03250 PF01479 S4 domain HPY07_03250 PF00849 RNA pseudouridylate synthase HPY07_03255 PF01713 Smr domain HPY07_03275 PF02838 Glycosyl hydrolase family 20, domain 2 HPY07_03275 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HPY07_03275 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY07_03275 PF03173 Putative carbohydrate binding domain HPY07_03285 PF00403 Heavy-metal-associated domain HPY07_03290 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY07_03295 PF01389 OmpA-like transmembrane domain HPY07_03295 PF00691 OmpA family HPY07_03305 PF07715 TonB-dependent Receptor Plug Domain HPY07_03310 PF08021 Siderophore-interacting FAD-binding domain HPY07_03310 PF04954 Siderophore-interacting protein HPY07_03315 PF00501 AMP-binding enzyme HPY07_03315 PF00668 Condensation domain HPY07_03315 PF08242 Methyltransferase domain HPY07_03315 PF00550 Phosphopantetheine attachment site HPY07_03350 PF01584 CheW-like domain HPY07_03350 PF00072 Response regulator receiver domain HPY07_03355 PF03705 CheR methyltransferase, all-alpha domain HPY07_03355 PF01739 CheR methyltransferase, SAM binding domain HPY07_03360 PF00460 Flagella basal body rod protein HPY07_03365 PF00460 Flagella basal body rod protein HPY07_03365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY07_03370 PF03963 Flagellar hook capping protein - N-terminal region HPY07_03370 PF13860 FlgD Ig-like domain HPY07_03370 PF13861 FlgD Tudor-like domain HPY07_03375 PF07559 Flagellar basal body protein FlaE HPY07_03375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY07_03375 PF00460 Flagella basal body rod protein HPY07_03380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY07_03380 PF00460 Flagella basal body rod protein HPY07_03385 PF00460 Flagella basal body rod protein HPY07_03385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY07_03390 PF02107 Flagellar L-ring protein HPY07_03395 PF02119 Flagellar P-ring protein HPY07_03400 PF10135 Rod binding protein HPY07_03400 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HPY07_03405 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY07_03405 PF07196 Flagellin hook IN motif HPY07_03415 PF00700 Bacterial flagellin C-terminal helical region HPY07_03415 PF07196 Flagellin hook IN motif HPY07_03415 PF00669 Bacterial flagellin N-terminal helical region HPY07_03420 PF00700 Bacterial flagellin C-terminal helical region HPY07_03420 PF07196 Flagellin hook IN motif HPY07_03420 PF00669 Bacterial flagellin N-terminal helical region HPY07_03505 PF01926 50S ribosome-binding GTPase HPY07_03505 PF06071 Protein of unknown function (DUF933) HPY07_03510 PF01195 Peptidyl-tRNA hydrolase HPY07_03515 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HPY07_03515 PF14572 Phosphoribosyl synthetase-associated domain HPY07_03520 PF00288 GHMP kinases N terminal domain HPY07_03520 PF08544 GHMP kinases C terminal HPY07_03525 PF03550 Outer membrane lipoprotein LolB HPY07_03530 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HPY07_03530 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HPY07_03530 PF01488 Shikimate / quinate 5-dehydrogenase HPY07_03535 PF00472 RF-1 domain HPY07_03535 PF03462 PCRF domain HPY07_03540 PF17827 PrmC N-terminal domain HPY07_03540 PF13847 Methyltransferase domain HPY07_03545 PF04247 Invasion gene expression up-regulator, SirB HPY07_03550 PF13369 Transglutaminase-like superfamily HPY07_03555 PF00793 DAHP synthetase I family HPY07_03560 PF02872 5'-nucleotidase, C-terminal domain HPY07_03560 PF00149 Calcineurin-like phosphoesterase HPY07_03565 PF04073 Aminoacyl-tRNA editing domain HPY07_03570 PF00860 Permease family HPY07_03585 PF03358 NADPH-dependent FMN reductase HPY07_03590 PF03960 ArsC family HPY07_03595 PF01435 Peptidase family M48 HPY07_03595 PF13181 Tetratricopeptide repeat HPY07_03605 PF01594 AI-2E family transporter HPY07_03610 PF02743 Cache domain HPY07_03610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_03610 PF00672 HAMP domain HPY07_03615 PF00578 AhpC/TSA family HPY07_03625 PF00701 Dihydrodipicolinate synthetase family HPY07_03630 PF06804 NlpB/DapX lipoprotein HPY07_03640 PF02557 D-alanyl-D-alanine carboxypeptidase HPY07_03645 PF01546 Peptidase family M20/M25/M40 HPY07_03645 PF07687 Peptidase dimerisation domain HPY07_03650 PF03960 ArsC family HPY07_03665 PF11143 Protein of unknown function (DUF2919) HPY07_03670 PF04261 Dyp-type peroxidase family HPY07_03675 PF10282 Lactonase, 7-bladed beta-propeller HPY07_03680 PF02838 Glycosyl hydrolase family 20, domain 2 HPY07_03680 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY07_03685 PF01081 KDPG and KHG aldolase HPY07_03690 PF00294 pfkB family carbohydrate kinase HPY07_03695 PF00474 Sodium:solute symporter family HPY07_03705 PF07969 Amidohydrolase family HPY07_03715 PF02685 Glucokinase HPY07_03715 PF01380 SIS domain HPY07_03715 PF01418 Helix-turn-helix domain, rpiR family HPY07_03720 PF00669 Bacterial flagellin N-terminal helical region HPY07_03720 PF07196 Flagellin hook IN motif HPY07_03720 PF00700 Bacterial flagellin C-terminal helical region HPY07_03725 PF00700 Bacterial flagellin C-terminal helical region HPY07_03725 PF07196 Flagellin hook IN motif HPY07_03725 PF00669 Bacterial flagellin N-terminal helical region HPY07_03730 PF07196 Flagellin hook IN motif HPY07_03730 PF00669 Bacterial flagellin N-terminal helical region HPY07_03730 PF00700 Bacterial flagellin C-terminal helical region HPY07_03735 PF03646 FlaG protein HPY07_03740 PF07195 Flagellar hook-associated protein 2 C-terminus HPY07_03740 PF07196 Flagellin hook IN motif HPY07_03740 PF02465 Flagellar hook-associated protein 2 N-terminus HPY07_03750 PF02561 Flagellar protein FliS HPY07_03755 PF00158 Sigma-54 interaction domain HPY07_03755 PF06490 Flagellar regulatory protein FleQ HPY07_03755 PF02954 Bacterial regulatory protein, Fis family HPY07_03760 PF13493 Domain of unknown function (DUF4118) HPY07_03760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_03760 PF13426 PAS domain HPY07_03760 PF08447 PAS fold HPY07_03760 PF00989 PAS fold HPY07_03760 PF00512 His Kinase A (phospho-acceptor) domain HPY07_03765 PF00072 Response regulator receiver domain HPY07_03765 PF02954 Bacterial regulatory protein, Fis family HPY07_03765 PF00158 Sigma-54 interaction domain HPY07_03770 PF02049 Flagellar hook-basal body complex protein FliE HPY07_03775 PF08345 Flagellar M-ring protein C-terminal HPY07_03775 PF01514 Secretory protein of YscJ/FliF family HPY07_03780 PF01706 FliG C-terminal domain HPY07_03780 PF14842 FliG N-terminal domain HPY07_03780 PF14841 FliG middle domain HPY07_03785 PF02108 Flagellar assembly protein FliH HPY07_03790 PF18269 T3SS EscN ATPase C-terminal domain HPY07_03790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY07_03810 PF03748 Flagellar basal body-associated protein FliL HPY07_03815 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY07_03815 PF02154 Flagellar motor switch protein FliM HPY07_03820 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY07_03825 PF04347 Flagellar biosynthesis protein, FliO HPY07_03830 PF00813 FliP family HPY07_03835 PF01313 Bacterial export proteins, family 3 HPY07_03840 PF01311 Bacterial export proteins, family 1 HPY07_03845 PF01312 FlhB HrpN YscU SpaS Family HPY07_03850 PF01713 Smr domain HPY07_03855 PF05175 Methyltransferase small domain HPY07_03860 PF01264 Chorismate synthase HPY07_03865 PF03458 UPF0126 domain HPY07_03870 PF04315 Elongation factor P hydroxylase HPY07_03875 PF08891 YfcL protein HPY07_03880 PF03358 NADPH-dependent FMN reductase HPY07_03885 PF01266 FAD dependent oxidoreductase HPY07_03885 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HPY07_03890 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY07_03890 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY07_03895 PF11890 Domain of unknown function (DUF3410) HPY07_03895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY07_03895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY07_03900 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY07_03900 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY07_03905 PF01475 Ferric uptake regulator family HPY07_03915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_03915 PF03466 LysR substrate binding domain HPY07_03920 PF03788 LrgA family HPY07_03925 PF04172 LrgB-like family HPY07_03930 PF00258 Flavodoxin HPY07_03940 PF12697 Alpha/beta hydrolase family HPY07_03945 PF17206 SeqA protein N-terminal domain HPY07_03945 PF03925 SeqA protein C-terminal domain HPY07_03950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY07_03950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY07_03950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY07_03950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY07_03960 PF01784 NIF3 (NGG1p interacting factor 3) HPY07_03965 PF00285 Citrate synthase, C-terminal domain HPY07_03970 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY07_03975 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY07_03980 PF02910 Fumarate reductase flavoprotein C-term HPY07_03980 PF00890 FAD binding domain HPY07_03985 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY07_03990 PF02779 Transketolase, pyrimidine binding domain HPY07_03990 PF16078 2-oxoglutarate dehydrogenase N-terminus HPY07_03990 PF00676 Dehydrogenase E1 component HPY07_03990 PF16870 2-oxoglutarate dehydrogenase C-terminal HPY07_03995 PF02817 e3 binding domain HPY07_03995 PF00364 Biotin-requiring enzyme HPY07_03995 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY07_04000 PF00549 CoA-ligase HPY07_04000 PF08442 ATP-grasp domain HPY07_04005 PF00549 CoA-ligase HPY07_04005 PF02629 CoA binding domain HPY07_04010 PF00950 ABC 3 transport family HPY07_04015 PF00005 ABC transporter HPY07_04020 PF01297 Zinc-uptake complex component A periplasmic HPY07_04025 PF12833 Helix-turn-helix domain HPY07_04025 PF02311 AraC-like ligand binding domain HPY07_04030 PF04023 FeoA domain HPY07_04035 PF07664 Ferrous iron transport protein B C terminus HPY07_04035 PF02421 Ferrous iron transport protein B HPY07_04035 PF07670 Nucleoside recognition HPY07_04050 PF05746 DALR anticodon binding domain HPY07_04050 PF00750 tRNA synthetases class I (R) HPY07_04050 PF03485 Arginyl tRNA synthetase N terminal domain HPY07_04060 PF05193 Peptidase M16 inactive domain HPY07_04060 PF00675 Insulinase (Peptidase family M16) HPY07_04065 PF00300 Histidine phosphatase superfamily (branch 1) HPY07_04070 PF00771 FHIPEP family HPY07_04075 PF00448 SRP54-type protein, GTPase domain HPY07_04080 PF10609 NUBPL iron-transfer P-loop NTPase HPY07_04085 PF04542 Sigma-70 region 2 HPY07_04085 PF04539 Sigma-70 region 3 HPY07_04085 PF04545 Sigma-70, region 4 HPY07_04090 PF00072 Response regulator receiver domain HPY07_04095 PF04344 Chemotaxis phosphatase, CheZ HPY07_04100 PF01627 Hpt domain HPY07_04100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_04100 PF00072 Response regulator receiver domain HPY07_04100 PF02895 Signal transducing histidine kinase, homodimeric domain HPY07_04100 PF01584 CheW-like domain HPY07_04105 PF00072 Response regulator receiver domain HPY07_04105 PF01339 CheB methylesterase HPY07_04110 PF13614 AAA domain HPY07_04120 PF01584 CheW-like domain HPY07_04130 PF00005 ABC transporter HPY07_04135 PF03379 CcmB protein HPY07_04140 PF01578 Cytochrome C assembly protein HPY07_04145 PF04995 Heme exporter protein D (CcmD) HPY07_04150 PF03100 CcmE HPY07_04155 PF01578 Cytochrome C assembly protein HPY07_04155 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HPY07_04160 PF08534 Redoxin HPY07_04165 PF03918 Cytochrome C biogenesis protein HPY07_04175 PF04333 MlaA lipoprotein HPY07_04190 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY07_04190 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY07_04195 PF00462 Glutaredoxin HPY07_04200 PF01131 DNA topoisomerase HPY07_04200 PF01751 Toprim domain HPY07_04205 PF00850 Histone deacetylase domain HPY07_04220 PF11893 Domain of unknown function (DUF3413) HPY07_04220 PF00884 Sulfatase HPY07_04225 PF07208 Protein of unknown function (DUF1414) HPY07_04230 PF04245 37-kD nucleoid-associated bacterial protein HPY07_04240 PF03553 Na+/H+ antiporter family HPY07_04245 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY07_04245 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY07_04250 PF01914 MarC family integral membrane protein HPY07_04255 PF00465 Iron-containing alcohol dehydrogenase HPY07_04255 PF00171 Aldehyde dehydrogenase family HPY07_04265 PF01740 STAS domain HPY07_04265 PF00916 Sulfate permease family HPY07_04270 PF12111 Polyribonucleotide phosphorylase C terminal HPY07_04270 PF00575 S1 RNA binding domain HPY07_04270 PF10150 Ribonuclease E/G family HPY07_04275 PF01479 S4 domain HPY07_04275 PF00849 RNA pseudouridylate synthase HPY07_04280 PF02545 Maf-like protein HPY07_04285 PF02620 Large ribosomal RNA subunit accumulation protein YceD HPY07_04290 PF01783 Ribosomal L32p protein family HPY07_04295 PF02504 Fatty acid synthesis protein HPY07_04300 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY07_04300 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY07_04305 PF00698 Acyl transferase domain HPY07_04315 PF00550 Phosphopantetheine attachment site HPY07_04320 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY07_04320 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY07_04325 PF01063 Amino-transferase class IV HPY07_04330 PF02618 YceG-like family HPY07_04335 PF02223 Thymidylate kinase HPY07_04340 PF09115 DNA polymerase III, delta subunit, C terminal HPY07_04345 PF01026 TatD related DNase HPY07_04350 PF00367 phosphotransferase system, EIIB HPY07_04350 PF02378 Phosphotransferase system, EIIC HPY07_04360 PF00209 Sodium:neurotransmitter symporter family HPY07_04375 PF01734 Patatin-like phospholipase HPY07_04380 PF00224 Pyruvate kinase, barrel domain HPY07_04380 PF02887 Pyruvate kinase, alpha/beta domain HPY07_04385 PF00480 ROK family HPY07_04390 PF00072 Response regulator receiver domain HPY07_04390 PF01584 CheW-like domain HPY07_04405 PF13847 Methyltransferase domain HPY07_04415 PF01263 Aldose 1-epimerase HPY07_04420 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY07_04420 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY07_04425 PF01641 SelR domain HPY07_04435 PF07023 Protein of unknown function (DUF1315) HPY07_04440 PF00710 Asparaginase, N-terminal HPY07_04440 PF17763 Glutaminase/Asparaginase C-terminal domain HPY07_04445 PF01343 Peptidase family S49 HPY07_04450 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY07_04450 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY07_04455 PF01842 ACT domain HPY07_04455 PF00551 Formyl transferase HPY07_04465 PF04851 Type III restriction enzyme, res subunit HPY07_04465 PF13307 Helicase C-terminal domain HPY07_04470 PF00814 Glycoprotease family HPY07_04485 PF00561 alpha/beta hydrolase fold HPY07_04490 PF13193 AMP-binding enzyme C-terminal domain HPY07_04490 PF00501 AMP-binding enzyme HPY07_04495 PF01612 3'-5' exonuclease HPY07_04495 PF00570 HRDC domain HPY07_04510 PF13286 Phosphohydrolase-associated domain HPY07_04510 PF01966 HD domain HPY07_04520 PF00155 Aminotransferase class I and II HPY07_04525 PF00425 chorismate binding enzyme HPY07_04530 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY07_04530 PF16582 Middle domain of thiamine pyrophosphate HPY07_04530 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY07_04535 PF12697 Alpha/beta hydrolase family HPY07_04540 PF00378 Enoyl-CoA hydratase/isomerase HPY07_04545 PF13378 Enolase C-terminal domain-like HPY07_04550 PF00501 AMP-binding enzyme HPY07_04550 PF13193 AMP-binding enzyme C-terminal domain HPY07_04555 PF03594 Benzoate membrane transport protein HPY07_04560 PF07690 Major Facilitator Superfamily HPY07_04580 PF04170 NlpE N-terminal domain HPY07_04585 PF03776 Septum formation topological specificity factor MinE HPY07_04590 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY07_04595 PF03775 Septum formation inhibitor MinC, C-terminal domain HPY07_04595 PF05209 Septum formation inhibitor MinC, N-terminal domain HPY07_04600 PF05166 YcgL domain HPY07_04605 PF13406 Transglycosylase SLT domain HPY07_04610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_04610 PF03466 LysR substrate binding domain HPY07_04615 PF07662 Na+ dependent nucleoside transporter C-terminus HPY07_04615 PF01773 Na+ dependent nucleoside transporter N-terminus HPY07_04615 PF07670 Nucleoside recognition HPY07_04620 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY07_04625 PF00384 Molybdopterin oxidoreductase HPY07_04625 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY07_04625 PF01568 Molydopterin dinucleotide binding domain HPY07_04635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_04635 PF03466 LysR substrate binding domain HPY07_04640 PF01494 FAD binding domain HPY07_04645 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HPY07_04655 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HPY07_04655 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HPY07_04700 PF13188 PAS domain HPY07_04700 PF03707 Bacterial signalling protein N terminal repeat HPY07_04700 PF00990 Diguanylate cyclase, GGDEF domain HPY07_04700 PF00563 EAL domain HPY07_04710 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HPY07_04715 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY07_04720 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HPY07_04725 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY07_04730 PF02954 Bacterial regulatory protein, Fis family HPY07_04730 PF00072 Response regulator receiver domain HPY07_04730 PF00158 Sigma-54 interaction domain HPY07_04735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_04735 PF00512 His Kinase A (phospho-acceptor) domain HPY07_04745 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY07_04745 PF05697 Bacterial trigger factor protein (TF) HPY07_04745 PF05698 Bacterial trigger factor protein (TF) C-terminus HPY07_04750 PF00574 Clp protease HPY07_04755 PF10431 C-terminal, D2-small domain, of ClpB protein HPY07_04755 PF07724 AAA domain (Cdc48 subfamily) HPY07_04755 PF06689 ClpX C4-type zinc finger HPY07_04760 PF00004 ATPase family associated with various cellular activities (AAA) HPY07_04760 PF02190 ATP-dependent protease La (LON) substrate-binding domain HPY07_04760 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY07_04765 PF00216 Bacterial DNA-binding protein HPY07_04770 PF13145 PPIC-type PPIASE domain HPY07_04780 PF02224 Cytidylate kinase HPY07_04785 PF00575 S1 RNA binding domain HPY07_04790 PF00216 Bacterial DNA-binding protein HPY07_04795 PF06305 Lipopolysaccharide assembly protein A domain HPY07_04800 PF18073 Rubredoxin metal binding domain HPY07_04805 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY07_04810 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HPY07_04820 PF03466 LysR substrate binding domain HPY07_04820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_04830 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY07_04830 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY07_04835 PF01037 Lrp/AsnC ligand binding domain HPY07_04840 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HPY07_04840 PF17854 FtsK alpha domain HPY07_04840 PF09397 Ftsk gamma domain HPY07_04840 PF01580 FtsK/SpoIIIE family HPY07_04845 PF02600 Disulfide bond formation protein DsbB HPY07_04850 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HPY07_04855 PF00392 Bacterial regulatory proteins, gntR family HPY07_04855 PF07840 FadR C-terminal domain HPY07_04865 PF00672 HAMP domain HPY07_04865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_04870 PF01230 HIT domain HPY07_04885 PF13036 Peptidoglycan-synthase activator LpoB HPY07_04885 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HPY07_04895 PF05728 Uncharacterised protein family (UPF0227) HPY07_04900 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY07_04910 PF07968 Leukocidin/Hemolysin toxin family HPY07_04910 PF12563 Hemolytic toxin N terminal HPY07_04910 PF16458 Beta-prism lectin HPY07_04915 PF07968 Leukocidin/Hemolysin toxin family HPY07_04915 PF12563 Hemolytic toxin N terminal HPY07_04915 PF16458 Beta-prism lectin HPY07_04925 PF02559 CarD-like/TRCF domain HPY07_04925 PF00270 DEAD/DEAH box helicase HPY07_04925 PF03461 TRCF domain HPY07_04925 PF00271 Helicase conserved C-terminal domain HPY07_04925 PF17757 UvrB interaction domain HPY07_04935 PF12704 MacB-like periplasmic core domain HPY07_04935 PF02687 FtsX-like permease family HPY07_04940 PF00005 ABC transporter HPY07_04945 PF02687 FtsX-like permease family HPY07_04945 PF12704 MacB-like periplasmic core domain HPY07_04955 PF13567 Domain of unknown function (DUF4131) HPY07_04955 PF03772 Competence protein HPY07_04955 PF00753 Metallo-beta-lactamase superfamily HPY07_04960 PF00005 ABC transporter HPY07_04960 PF00664 ABC transporter transmembrane region HPY07_04965 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HPY07_04970 PF03966 Trm112p-like protein HPY07_04975 PF02348 Cytidylyltransferase HPY07_04980 PF04293 SpoVR like protein HPY07_04985 PF04285 Protein of unknown function (DUF444) HPY07_04990 PF08298 PrkA AAA domain HPY07_04990 PF06798 PrkA serine protein kinase C-terminal domain HPY07_04995 PF03887 YfbU domain HPY07_05005 PF04055 Radical SAM superfamily HPY07_05010 PF00672 HAMP domain HPY07_05010 PF12729 Four helix bundle sensory module for signal transduction HPY07_05010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_05020 PF01228 Glycine radical HPY07_05020 PF02901 Pyruvate formate lyase-like HPY07_05030 PF00005 ABC transporter HPY07_05035 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY07_05040 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_05045 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_05050 PF03372 Endonuclease/Exonuclease/phosphatase family HPY07_05055 PF10689 Protein of unknown function (DUF2496) HPY07_05060 PF07445 Primosomal replication protein priC HPY07_05065 PF01925 Sulfite exporter TauE/SafE HPY07_05070 PF06733 DEAD_2 HPY07_05070 PF13307 Helicase C-terminal domain HPY07_05080 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY07_05085 PF02810 SEC-C motif HPY07_05090 PF00563 EAL domain HPY07_05090 PF08668 HDOD domain HPY07_05095 PF00149 Calcineurin-like phosphoesterase HPY07_05100 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY07_05105 PF09190 DALR domain HPY07_05105 PF01406 tRNA synthetases class I (C) catalytic domain HPY07_05110 PF02075 Crossover junction endodeoxyribonuclease RuvC HPY07_05115 PF07499 RuvA, C-terminal domain HPY07_05115 PF01330 RuvA N terminal domain HPY07_05120 PF17864 RuvB AAA lid domain HPY07_05120 PF05496 Holliday junction DNA helicase RuvB P-loop domain HPY07_05120 PF05491 RuvB C-terminal winged helix domain HPY07_05125 PF01654 Cytochrome bd terminal oxidase subunit I HPY07_05130 PF02322 Cytochrome bd terminal oxidase subunit II HPY07_05135 PF08173 Membrane bound YbgT-like protein HPY07_05140 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HPY07_05145 PF03061 Thioesterase superfamily HPY07_05150 PF01618 MotA/TolQ/ExbB proton channel family HPY07_05155 PF02472 Biopolymer transport protein ExbD/TolR HPY07_05165 PF04052 TolB amino-terminal domain HPY07_05165 PF07676 WD40-like Beta Propeller Repeat HPY07_05170 PF00691 OmpA family HPY07_05180 PF02445 Quinolinate synthetase A protein HPY07_05190 PF00072 Response regulator receiver domain HPY07_05190 PF09308 LuxQ, periplasmic HPY07_05190 PF00512 His Kinase A (phospho-acceptor) domain HPY07_05190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_05195 PF06610 L-alanine exporter HPY07_05200 PF01238 Phosphomannose isomerase type I HPY07_05205 PF02378 Phosphotransferase system, EIIC HPY07_05205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY07_05205 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY07_05210 PF12833 Helix-turn-helix domain HPY07_05220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY07_05240 PF00171 Aldehyde dehydrogenase family HPY07_05245 PF01590 GAF domain HPY07_05245 PF02954 Bacterial regulatory protein, Fis family HPY07_05245 PF00158 Sigma-54 interaction domain HPY07_05250 PF09905 DNA-binding protein VF530 HPY07_05260 PF00875 DNA photolyase HPY07_05260 PF03441 FAD binding domain of DNA photolyase HPY07_05315 PF04002 RadC-like JAB domain HPY07_05325 PF09264 Vibrio cholerae sialidase, lectin insertion HPY07_05325 PF13088 BNR repeat-like domain HPY07_05330 PF01979 Amidohydrolase family HPY07_05335 PF00480 ROK family HPY07_05340 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase HPY07_05345 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY07_05350 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HPY07_05355 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY07_05360 PF00701 Dihydrodipicolinate synthetase family HPY07_05365 PF01418 Helix-turn-helix domain, rpiR family HPY07_05365 PF01380 SIS domain HPY07_05370 PF01344 Kelch motif HPY07_05375 PF07646 Kelch motif HPY07_05385 PF02368 Bacterial Ig-like domain (group 2) HPY07_05385 PF11999 Protein of unknown function (DUF3494) HPY07_05410 PF00561 alpha/beta hydrolase fold HPY07_05415 PF03347 Vibrio thermostable direct hemolysin HPY07_05420 PF13402 Peptidase M60, enhancin and enhancin-like HPY07_05420 PF13322 Domain of unknown function (DUF4092) HPY07_05420 PF17291 N-terminal domain of M60-like peptidases HPY07_05525 PF00771 FHIPEP family HPY07_05530 PF01312 FlhB HrpN YscU SpaS Family HPY07_05535 PF00691 OmpA family HPY07_05560 PF00486 Transcriptional regulatory protein, C terminal HPY07_05570 PF00813 FliP family HPY07_05585 PF03958 Bacterial type II/III secretion system short domain HPY07_05585 PF00263 Bacterial type II and III secretion system protein HPY07_05590 PF18269 T3SS EscN ATPase C-terminal domain HPY07_05590 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY07_05590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY07_05635 PF03545 Yersinia virulence determinant (YopE) HPY07_05635 PF09020 YopE, N terminal HPY07_05650 PF13356 Arm DNA-binding domain HPY07_05650 PF00589 Phage integrase family HPY07_05660 PF00873 AcrB/AcrD/AcrF family HPY07_05665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY07_05675 PF02470 MlaD protein HPY07_05680 PF04403 Paraquat-inducible protein A HPY07_05685 PF00924 Mechanosensitive ion channel HPY07_05685 PF05552 Conserved TM helix HPY07_05705 PF08362 YcdC-like protein, C-terminal region HPY07_05705 PF00440 Bacterial regulatory proteins, tetR family HPY07_05710 PF00171 Aldehyde dehydrogenase family HPY07_05715 PF07383 Protein of unknown function (DUF1496) HPY07_05730 PF00440 Bacterial regulatory proteins, tetR family HPY07_05730 PF16295 Tetracyclin repressor-like, C-terminal domain HPY07_05735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY07_05735 PF02770 Acyl-CoA dehydrogenase, middle domain HPY07_05735 PF09317 Domain of unknown function (DUF1974) HPY07_05735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY07_05740 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY07_05740 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY07_05740 PF07055 Enoyl reductase FAD binding domain HPY07_05745 PF01176 Translation initiation factor 1A / IF-1 HPY07_05750 PF04377 Arginine-tRNA-protein transferase, C terminus HPY07_05750 PF04376 Arginine-tRNA-protein transferase, N terminus HPY07_05755 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HPY07_05760 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY07_05765 PF10692 Protein of unknown function (DUF2498) HPY07_05770 PF08272 Topoisomerase I zinc-ribbon-like HPY07_05770 PF01751 Toprim domain HPY07_05770 PF01131 DNA topoisomerase HPY07_05770 PF01396 Topoisomerase DNA binding C4 zinc finger HPY07_05775 PF00483 Nucleotidyl transferase HPY07_05780 PF00534 Glycosyl transferases group 1 HPY07_05780 PF08323 Starch synthase catalytic domain HPY07_05800 PF04993 TfoX N-terminal domain HPY07_05800 PF04994 TfoX C-terminal domain HPY07_05805 PF00356 Bacterial regulatory proteins, lacI family HPY07_05810 PF02613 Nitrate reductase delta subunit HPY07_05815 PF00486 Transcriptional regulatory protein, C terminal HPY07_05815 PF00072 Response regulator receiver domain HPY07_05820 PF02698 DUF218 domain HPY07_05825 PF13847 Methyltransferase domain HPY07_05830 PF03882 MukF winged-helix domain HPY07_05830 PF17192 MukF middle domain HPY07_05830 PF17193 MukF C-terminal domain HPY07_05835 PF04288 MukE-like family HPY07_05840 PF16330 MukB hinge domain HPY07_05840 PF04310 MukB N-terminal HPY07_05845 PF01037 Lrp/AsnC ligand binding domain HPY07_05850 PF01810 LysE type translocator HPY07_05855 PF08497 Radical SAM N-terminal HPY07_05855 PF04055 Radical SAM superfamily HPY07_05855 PF11842 Domain of unknown function (DUF3362) HPY07_05860 PF08448 PAS fold HPY07_05860 PF08447 PAS fold HPY07_05860 PF00990 Diguanylate cyclase, GGDEF domain HPY07_05860 PF00563 EAL domain HPY07_05865 PF00675 Insulinase (Peptidase family M16) HPY07_05865 PF05193 Peptidase M16 inactive domain HPY07_05880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_05880 PF03466 LysR substrate binding domain HPY07_05885 PF08267 Cobalamin-independent synthase, N-terminal domain HPY07_05885 PF01717 Cobalamin-independent synthase, Catalytic domain HPY07_05895 PF03795 YCII-related domain HPY07_05900 PF03061 Thioesterase superfamily HPY07_05905 PF04279 Intracellular septation protein A HPY07_05915 PF02698 DUF218 domain HPY07_05920 PF01370 NAD dependent epimerase/dehydratase family HPY07_05930 PF01226 Formate/nitrite transporter HPY07_05935 PF06796 Periplasmic nitrate reductase protein NapE HPY07_05940 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY07_05945 PF01568 Molydopterin dinucleotide binding domain HPY07_05945 PF00384 Molybdopterin oxidoreductase HPY07_05945 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY07_05965 PF01368 DHH family HPY07_05965 PF02833 DHHA2 domain HPY07_05980 PF01797 Transposase IS200 like HPY07_05995 PF00005 ABC transporter HPY07_06000 PF00005 ABC transporter HPY07_06000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY07_06005 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY07_06005 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_06010 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_06015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY07_06020 PF00158 Sigma-54 interaction domain HPY07_06020 PF02954 Bacterial regulatory protein, Fis family HPY07_06025 PF04012 PspA/IM30 family HPY07_06040 PF00529 HlyD membrane-fusion protein of T1SS HPY07_06040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY07_06045 PF13533 Biotin-lipoyl like HPY07_06050 PF00873 AcrB/AcrD/AcrF family HPY07_06055 PF03352 Methyladenine glycosylase HPY07_06060 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY07_06065 PF13091 PLD-like domain HPY07_06065 PF13396 Phospholipase_D-nuclease N-terminal HPY07_06070 PF00209 Sodium:neurotransmitter symporter family HPY07_06075 PF00849 RNA pseudouridylate synthase HPY07_06080 PF01066 CDP-alcohol phosphatidyltransferase HPY07_06085 PF00005 ABC transporter HPY07_06090 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_06095 PF13416 Bacterial extracellular solute-binding protein HPY07_06105 PF06945 Protein of unknown function (DUF1289) HPY07_06115 PF03222 Tryptophan/tyrosine permease family HPY07_06125 PF00571 CBS domain HPY07_06125 PF01769 Divalent cation transporter HPY07_06125 PF03448 MgtE intracellular N domain HPY07_06130 PF00512 His Kinase A (phospho-acceptor) domain HPY07_06130 PF00072 Response regulator receiver domain HPY07_06130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_06130 PF09308 LuxQ, periplasmic HPY07_06135 PF00990 Diguanylate cyclase, GGDEF domain HPY07_06135 PF03707 Bacterial signalling protein N terminal repeat HPY07_06135 PF00563 EAL domain HPY07_06145 PF01752 Collagenase HPY07_06145 PF04151 Bacterial pre-peptidase C-terminal domain HPY07_06145 PF08453 Peptidase family M9 N-terminal HPY07_06150 PF00089 Trypsin HPY07_06155 PF12793 Sugar transport-related sRNA regulator N-term HPY07_06155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY07_06170 PF09101 Exotoxin A binding HPY07_06170 PF09009 Exotoxin A catalytic HPY07_06170 PF09102 Exotoxin A, targeting HPY07_06180 PF12729 Four helix bundle sensory module for signal transduction HPY07_06180 PF00672 HAMP domain HPY07_06180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_06190 PF00563 EAL domain HPY07_06190 PF00360 Phytochrome region HPY07_06190 PF00990 Diguanylate cyclase, GGDEF domain HPY07_06190 PF01590 GAF domain HPY07_06195 PF01386 Ribosomal L25p family HPY07_06200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_06200 PF00989 PAS fold HPY07_06200 PF00512 His Kinase A (phospho-acceptor) domain HPY07_06200 PF11808 Phosphate regulon sensor protein PhoR HPY07_06205 PF00486 Transcriptional regulatory protein, C terminal HPY07_06205 PF00072 Response regulator receiver domain HPY07_06215 PF04851 Type III restriction enzyme, res subunit HPY07_06215 PF00271 Helicase conserved C-terminal domain HPY07_06220 PF01479 S4 domain HPY07_06220 PF00849 RNA pseudouridylate synthase HPY07_06225 PF07690 Major Facilitator Superfamily HPY07_06235 PF13460 NAD(P)H-binding HPY07_06235 PF11066 Protein of unknown function (DUF2867) HPY07_06240 PF01554 MatE HPY07_06245 PF00005 ABC transporter HPY07_06260 PF06965 Na+/H+ antiporter 1 HPY07_06265 PF00202 Aminotransferase class-III HPY07_06270 PF03435 Saccharopine dehydrogenase NADP binding domain HPY07_06270 PF16653 Saccharopine dehydrogenase C-terminal domain HPY07_06280 PF01797 Transposase IS200 like HPY07_06290 PF00691 OmpA family HPY07_06290 PF05736 OprF membrane domain HPY07_06295 PF02321 Outer membrane efflux protein HPY07_06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_06315 PF03466 LysR substrate binding domain HPY07_06325 PF01863 Protein of unknown function DUF45 HPY07_06330 PF05971 RNA methyltransferase HPY07_06345 PF04204 Homoserine O-succinyltransferase HPY07_06365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY07_06380 PF00989 PAS fold HPY07_06380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_06380 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HPY07_06380 PF17203 Single cache domain 3 HPY07_06385 PF12431 Transcriptional regulator HPY07_06385 PF00072 Response regulator receiver domain HPY07_06395 PF00072 Response regulator receiver domain HPY07_06395 PF01584 CheW-like domain HPY07_06415 PF00072 Response regulator receiver domain HPY07_06415 PF00990 Diguanylate cyclase, GGDEF domain HPY07_06440 PF07690 Major Facilitator Superfamily HPY07_06445 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HPY07_06445 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HPY07_06450 PF10509 Galactokinase galactose-binding signature HPY07_06450 PF08544 GHMP kinases C terminal HPY07_06450 PF00288 GHMP kinases N terminal domain HPY07_06455 PF01263 Aldose 1-epimerase HPY07_06460 PF00990 Diguanylate cyclase, GGDEF domain HPY07_06465 PF17154 Gammaproteobacterial periplasmic sensor domain HPY07_06465 PF00563 EAL domain HPY07_06465 PF00990 Diguanylate cyclase, GGDEF domain HPY07_06465 PF00672 HAMP domain HPY07_06475 PF00205 Thiamine pyrophosphate enzyme, central domain HPY07_06475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY07_06475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY07_06480 PF03306 Alpha-acetolactate decarboxylase HPY07_06485 PF03466 LysR substrate binding domain HPY07_06485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_06490 PF17291 N-terminal domain of M60-like peptidases HPY07_06490 PF13402 Peptidase M60, enhancin and enhancin-like HPY07_06490 PF13322 Domain of unknown function (DUF4092) HPY07_06500 PF06628 Catalase-related immune-responsive HPY07_06500 PF00199 Catalase HPY07_06510 PF00080 Copper/zinc superoxide dismutase (SODC) HPY07_06515 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) HPY07_06520 PF00361 Proton-conducting membrane transporter HPY07_06520 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY07_06525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_06525 PF03466 LysR substrate binding domain HPY07_06530 PF00501 AMP-binding enzyme HPY07_06530 PF13193 AMP-binding enzyme C-terminal domain HPY07_06560 PF00206 Lyase HPY07_06560 PF10415 Fumarase C C-terminus HPY07_06570 PF01654 Cytochrome bd terminal oxidase subunit I HPY07_06575 PF02322 Cytochrome bd terminal oxidase subunit II HPY07_06580 PF00005 ABC transporter HPY07_06580 PF02687 FtsX-like permease family HPY07_06580 PF12704 MacB-like periplasmic core domain HPY07_06585 PF12704 MacB-like periplasmic core domain HPY07_06585 PF02687 FtsX-like permease family HPY07_06585 PF00005 ABC transporter HPY07_06590 PF12704 MacB-like periplasmic core domain HPY07_06590 PF02687 FtsX-like permease family HPY07_06590 PF00005 ABC transporter HPY07_06600 PF00529 HlyD membrane-fusion protein of T1SS HPY07_06615 PF00293 NUDIX domain HPY07_06615 PF09297 NADH pyrophosphatase zinc ribbon domain HPY07_06620 PF00709 Adenylosuccinate synthetase HPY07_06635 PF00977 Histidine biosynthesis protein HPY07_06640 PF00141 Peroxidase HPY07_06645 PF00232 Glycosyl hydrolase family 1 HPY07_06650 PF00356 Bacterial regulatory proteins, lacI family HPY07_06655 PF01042 Endoribonuclease L-PSP HPY07_06660 PF04074 YhcH/YjgK/YiaL HPY07_06665 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY07_06670 PF08220 DeoR-like helix-turn-helix domain HPY07_06670 PF00455 DeoR C terminal sensor domain HPY07_06675 PF17912 MalK OB fold domain HPY07_06675 PF00005 ABC transporter HPY07_06680 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_06685 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_06690 PF13416 Bacterial extracellular solute-binding protein HPY07_06700 PF01618 MotA/TolQ/ExbB proton channel family HPY07_06705 PF01618 MotA/TolQ/ExbB proton channel family HPY07_06710 PF02472 Biopolymer transport protein ExbD/TolR HPY07_06715 PF03544 Gram-negative bacterial TonB protein C-terminal HPY07_06725 PF01068 ATP dependent DNA ligase domain HPY07_06725 PF14743 DNA ligase OB-like domain HPY07_06735 PF01554 MatE HPY07_06745 PF03881 Fructosamine kinase HPY07_06755 PF00877 NlpC/P60 family HPY07_06760 PF00672 HAMP domain HPY07_06760 PF12729 Four helix bundle sensory module for signal transduction HPY07_06760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_06775 PF00480 ROK family HPY07_06790 PF00994 Probable molybdopterin binding domain HPY07_06790 PF03454 MoeA C-terminal region (domain IV) HPY07_06790 PF03453 MoeA N-terminal region (domain I and II) HPY07_06795 PF12804 MobA-like NTP transferase domain HPY07_06800 PF08402 TOBE domain HPY07_06800 PF00005 ABC transporter HPY07_06805 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_06810 PF12849 PBP superfamily domain HPY07_06815 PF02954 Bacterial regulatory protein, Fis family HPY07_06815 PF00072 Response regulator receiver domain HPY07_06815 PF00158 Sigma-54 interaction domain HPY07_06820 PF00989 PAS fold HPY07_06820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_06820 PF00512 His Kinase A (phospho-acceptor) domain HPY07_06825 PF12848 ABC transporter HPY07_06825 PF00005 ABC transporter HPY07_06830 PF02634 FdhD/NarQ family HPY07_06850 PF02613 Nitrate reductase delta subunit HPY07_06860 PF01568 Molydopterin dinucleotide binding domain HPY07_06860 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY07_06860 PF00384 Molybdopterin oxidoreductase HPY07_06865 PF13247 4Fe-4S dicluster domain HPY07_06880 PF02146 Sir2 family HPY07_06885 PF04461 Protein of unknown function (DUF520) HPY07_06890 PF00793 DAHP synthetase I family HPY07_06905 PF13509 S1 domain HPY07_06905 PF17783 CvfB-like winged helix domain HPY07_06910 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HPY07_06910 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HPY07_06910 PF01189 16S rRNA methyltransferase RsmB/F HPY07_06920 PF04403 Paraquat-inducible protein A HPY07_06925 PF00664 ABC transporter transmembrane region HPY07_06925 PF00005 ABC transporter HPY07_06930 PF13185 GAF domain HPY07_06935 PF17516 ProQ C-terminal domain HPY07_06935 PF04352 ProQ/FINO family HPY07_06940 PF17804 Tail specific protease N-terminal domain HPY07_06940 PF03572 Peptidase family S41 HPY07_06940 PF00595 PDZ domain HPY07_06940 PF11818 C-terminal domain of tail specific protease (DUF3340) HPY07_06950 PF01433 Peptidase family M1 domain HPY07_06950 PF11940 Domain of unknown function (DUF3458) Ig-like fold HPY07_06950 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HPY07_06960 PF05088 Bacterial NAD-glutamate dehydrogenase HPY07_06965 PF01180 Dihydroorotate dehydrogenase HPY07_06970 PF07126 Cell-division protein ZapC HPY07_06975 PF02926 THUMP domain HPY07_06975 PF01170 Putative RNA methylase family UPF0020 HPY07_06975 PF10672 S-adenosylmethionine-dependent methyltransferase HPY07_06995 PF04957 Ribosome modulation factor HPY07_07000 PF07977 FabA-like domain HPY07_07005 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY07_07005 PF13654 AAA domain HPY07_07010 PF06303 MatP N-terminal domain HPY07_07010 PF17414 MatP C-terminal ribbon-helix-helix domain HPY07_07090 PF16671 Actin cross-linking domain HPY07_07090 PF12146 Serine aminopeptidase, S33 HPY07_07090 PF11713 Peptidase C80 family HPY07_07090 PF11647 Membrane Localization Domain HPY07_07090 PF07634 RtxA repeat HPY07_07095 PF02794 RTX toxin acyltransferase family HPY07_07105 PF00664 ABC transporter transmembrane region HPY07_07105 PF00005 ABC transporter HPY07_07105 PF03412 Peptidase C39 family HPY07_07115 PF03412 Peptidase C39 family HPY07_07115 PF00664 ABC transporter transmembrane region HPY07_07115 PF00005 ABC transporter HPY07_07120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_07120 PF00512 His Kinase A (phospho-acceptor) domain HPY07_07120 PF09308 LuxQ, periplasmic HPY07_07120 PF00072 Response regulator receiver domain HPY07_07135 PF00115 Cytochrome C and Quinol oxidase polypeptide I HPY07_07150 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY07_07150 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HPY07_07160 PF00403 Heavy-metal-associated domain HPY07_07175 PF00027 Cyclic nucleotide-binding domain HPY07_07175 PF13545 Crp-like helix-turn-helix domain HPY07_07180 PF00582 Universal stress protein family HPY07_07185 PF01171 PP-loop family HPY07_07205 PF00005 ABC transporter HPY07_07205 PF08402 TOBE domain HPY07_07210 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_07215 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_07220 PF13416 Bacterial extracellular solute-binding protein HPY07_07225 PF13416 Bacterial extracellular solute-binding protein HPY07_07235 PF01235 Sodium:alanine symporter family HPY07_07240 PF01810 LysE type translocator HPY07_07270 PF16671 Actin cross-linking domain HPY07_07270 PF04717 Type VI secretion system, phage-baseplate injector HPY07_07275 PF05638 Type VI secretion system effector, Hcp HPY07_07280 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HPY07_07285 PF00270 DEAD/DEAH box helicase HPY07_07285 PF00271 Helicase conserved C-terminal domain HPY07_07290 PF00893 Small Multidrug Resistance protein HPY07_07295 PF03441 FAD binding domain of DNA photolyase HPY07_07295 PF00875 DNA photolyase HPY07_07300 PF07690 Major Facilitator Superfamily HPY07_07305 PF03466 LysR substrate binding domain HPY07_07305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_07315 PF01979 Amidohydrolase family HPY07_07320 PF10437 Bacterial lipoate protein ligase C-terminus HPY07_07320 PF03099 Biotin/lipoate A/B protein ligase family HPY07_07325 PF00012 Hsp70 protein HPY07_07335 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HPY07_07335 PF00270 DEAD/DEAH box helicase HPY07_07335 PF04408 Helicase associated domain (HA2) HPY07_07335 PF00271 Helicase conserved C-terminal domain HPY07_07335 PF11898 Domain of unknown function (DUF3418) HPY07_07355 PF00563 EAL domain HPY07_07355 PF03707 Bacterial signalling protein N terminal repeat HPY07_07355 PF00990 Diguanylate cyclase, GGDEF domain HPY07_07365 PF00012 Hsp70 protein HPY07_07370 PF00012 Hsp70 protein HPY07_07375 PF00990 Diguanylate cyclase, GGDEF domain HPY07_07375 PF17158 Membrane-associated sensor, integral membrane domain HPY07_07385 PF00990 Diguanylate cyclase, GGDEF domain HPY07_07385 PF00563 EAL domain HPY07_07385 PF03707 Bacterial signalling protein N terminal repeat HPY07_07405 PF06508 Queuosine biosynthesis protein QueC HPY07_07410 PF04055 Radical SAM superfamily HPY07_07420 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY07_07420 PF10414 Sirohaem synthase dimerisation region HPY07_07420 PF14824 Sirohaem biosynthesis protein central HPY07_07425 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY07_07430 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_07435 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_07440 PF00005 ABC transporter HPY07_07445 PF01027 Inhibitor of apoptosis-promoting Bax1 HPY07_07450 PF04358 DsrC like protein HPY07_07455 PF00708 Acylphosphatase HPY07_07465 PF00990 Diguanylate cyclase, GGDEF domain HPY07_07470 PF00462 Glutaredoxin HPY07_07470 PF08534 Redoxin HPY07_07475 PF00672 HAMP domain HPY07_07475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_07475 PF00512 His Kinase A (phospho-acceptor) domain HPY07_07475 PF01627 Hpt domain HPY07_07475 PF00072 Response regulator receiver domain HPY07_07475 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY07_07480 PF00072 Response regulator receiver domain HPY07_07485 PF14497 Glutathione S-transferase, C-terminal domain HPY07_07485 PF02798 Glutathione S-transferase, N-terminal domain HPY07_07495 PF04209 homogentisate 1,2-dioxygenase HPY07_07500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY07_07505 PF07687 Peptidase dimerisation domain HPY07_07505 PF01546 Peptidase family M20/M25/M40 HPY07_07520 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY07_07520 PF00501 AMP-binding enzyme HPY07_07520 PF13193 AMP-binding enzyme C-terminal domain HPY07_07530 PF12826 Helix-hairpin-helix motif HPY07_07530 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HPY07_07530 PF03120 NAD-dependent DNA ligase OB-fold domain HPY07_07530 PF00533 BRCA1 C Terminus (BRCT) domain HPY07_07530 PF01653 NAD-dependent DNA ligase adenylation domain HPY07_07605 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY07_07605 PF13193 AMP-binding enzyme C-terminal domain HPY07_07605 PF00501 AMP-binding enzyme HPY07_07610 PF04303 PrpF protein HPY07_07615 PF00330 Aconitase family (aconitate hydratase) HPY07_07615 PF00694 Aconitase C-terminal domain HPY07_07620 PF00285 Citrate synthase, C-terminal domain HPY07_07630 PF07729 FCD domain HPY07_07630 PF00392 Bacterial regulatory proteins, gntR family HPY07_07645 PF01970 Tripartite tricarboxylate transporter TctA family HPY07_07650 PF03466 LysR substrate binding domain HPY07_07650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_07655 PF00593 TonB dependent receptor HPY07_07655 PF07715 TonB-dependent Receptor Plug Domain HPY07_07680 PF00529 HlyD membrane-fusion protein of T1SS HPY07_07680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY07_07695 PF02653 Branched-chain amino acid transport system / permease component HPY07_07700 PF00005 ABC transporter HPY07_07705 PF13407 Periplasmic binding protein domain HPY07_07725 PF00486 Transcriptional regulatory protein, C terminal HPY07_07725 PF00072 Response regulator receiver domain HPY07_07730 PF00672 HAMP domain HPY07_07730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_07730 PF00512 His Kinase A (phospho-acceptor) domain HPY07_07735 PF06629 MltA-interacting protein MipA HPY07_07740 PF04393 Protein of unknown function (DUF535) HPY07_07745 PF00158 Sigma-54 interaction domain HPY07_07745 PF02954 Bacterial regulatory protein, Fis family HPY07_07745 PF00072 Response regulator receiver domain HPY07_07750 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY07_07750 PF00512 His Kinase A (phospho-acceptor) domain HPY07_07750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_07755 PF00939 Sodium:sulfate symporter transmembrane region HPY07_07760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_07760 PF00672 HAMP domain HPY07_07765 PF01168 Alanine racemase, N-terminal domain HPY07_07765 PF00842 Alanine racemase, C-terminal domain HPY07_07770 PF00892 EamA-like transporter family HPY07_07780 PF13302 Acetyltransferase (GNAT) domain HPY07_07785 PF00158 Sigma-54 interaction domain HPY07_07785 PF18024 Helix-turn-helix domain HPY07_07790 PF05128 Domain of unknown function (DUF697) HPY07_07795 PF04317 YcjX-like family, DUF463 HPY07_07810 PF04715 Anthranilate synthase component I, N terminal region HPY07_07810 PF00425 chorismate binding enzyme HPY07_07815 PF00293 NUDIX domain HPY07_07820 PF03222 Tryptophan/tyrosine permease family HPY07_07825 PF03313 Serine dehydratase alpha chain HPY07_07825 PF03315 Serine dehydratase beta chain HPY07_07830 PF01242 6-pyruvoyl tetrahydropterin synthase HPY07_07835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_07835 PF00672 HAMP domain HPY07_07835 PF12729 Four helix bundle sensory module for signal transduction HPY07_07840 PF00152 tRNA synthetases class II (D, K and N) HPY07_07840 PF01336 OB-fold nucleic acid binding domain HPY07_07845 PF08543 Phosphomethylpyrimidine kinase HPY07_07850 PF01966 HD domain HPY07_07850 PF00672 HAMP domain HPY07_07855 PF00155 Aminotransferase class I and II HPY07_07870 PF17200 Single Cache domain 2 HPY07_07870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_07870 PF00672 HAMP domain HPY07_07875 PF04349 Periplasmic glucan biosynthesis protein, MdoG HPY07_07880 PF13506 Glycosyl transferase family 21 HPY07_07885 PF02028 BCCT, betaine/carnitine/choline family transporter HPY07_07890 PF01047 MarR family HPY07_07895 PF00072 Response regulator receiver domain HPY07_07895 PF00196 Bacterial regulatory proteins, luxR family HPY07_07900 PF07730 Histidine kinase HPY07_07900 PF17200 Single Cache domain 2 HPY07_07905 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY07_07915 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY07_07930 PF00753 Metallo-beta-lactamase superfamily HPY07_07935 PF05951 Bacterial protein of unknown function (DUF882) HPY07_07970 PF00925 GTP cyclohydrolase II HPY07_07980 PF07690 Major Facilitator Superfamily HPY07_07995 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY07_07995 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY07_08005 PF03477 ATP cone domain HPY07_08005 PF00317 Ribonucleotide reductase, all-alpha domain HPY07_08005 PF02867 Ribonucleotide reductase, barrel domain HPY07_08010 PF00268 Ribonucleotide reductase, small chain HPY07_08015 PF00970 Oxidoreductase FAD-binding domain HPY07_08015 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY07_08015 PF00175 Oxidoreductase NAD-binding domain HPY07_08025 PF00994 Probable molybdopterin binding domain HPY07_08040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_08040 PF00672 HAMP domain HPY07_08040 PF17200 Single Cache domain 2 HPY07_08055 PF00005 ABC transporter HPY07_08060 PF01032 FecCD transport family HPY07_08065 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HPY07_08075 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HPY07_08080 PF02654 Cobalamin-5-phosphate synthase HPY07_08085 PF02277 Phosphoribosyltransferase HPY07_08090 PF01641 SelR domain HPY07_08100 PF00929 Exonuclease HPY07_08100 PF08411 Exonuclease C-terminal HPY07_08105 PF03788 LrgA family HPY07_08110 PF04172 LrgB-like family HPY07_08115 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HPY07_08115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY07_08125 PF02222 ATP-grasp domain HPY07_08130 PF05724 Thiopurine S-methyltransferase (TPMT) HPY07_08140 PF00216 Bacterial DNA-binding protein HPY07_08145 PF01588 Putative tRNA binding domain HPY07_08145 PF03484 tRNA synthetase B5 domain HPY07_08145 PF03147 Ferredoxin-fold anticodon binding domain HPY07_08145 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HPY07_08145 PF03483 B3/4 domain HPY07_08150 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HPY07_08150 PF01409 tRNA synthetases class II core domain (F) HPY07_08160 PF00990 Diguanylate cyclase, GGDEF domain HPY07_08160 PF00072 Response regulator receiver domain HPY07_08185 PF01066 CDP-alcohol phosphatidyltransferase HPY07_08190 PF01541 GIY-YIG catalytic domain HPY07_08190 PF02151 UvrB/uvrC motif HPY07_08190 PF08459 UvrC Helix-hairpin-helix N-terminal HPY07_08195 PF00196 Bacterial regulatory proteins, luxR family HPY07_08195 PF00072 Response regulator receiver domain HPY07_08200 PF03104 DNA polymerase family B, exonuclease domain HPY07_08200 PF00136 DNA polymerase family B HPY07_08205 PF00990 Diguanylate cyclase, GGDEF domain HPY07_08205 PF13426 PAS domain HPY07_08205 PF00563 EAL domain HPY07_08215 PF09285 Elongation factor P, C-terminal HPY07_08215 PF01132 Elongation factor P (EF-P) OB domain HPY07_08215 PF08207 Elongation factor P (EF-P) KOW-like domain HPY07_08220 PF04269 Protein of unknown function, DUF440 HPY07_08230 PF00392 Bacterial regulatory proteins, gntR family HPY07_08230 PF07702 UTRA domain HPY07_08235 PF01979 Amidohydrolase family HPY07_08240 PF00491 Arginase family HPY07_08245 PF17391 Urocanase N-terminal domain HPY07_08245 PF01175 Urocanase Rossmann-like domain HPY07_08245 PF17392 Urocanase C-terminal domain HPY07_08250 PF00221 Aromatic amino acid lyase HPY07_08265 PF04191 Phospholipid methyltransferase HPY07_08270 PF02913 FAD linked oxidases, C-terminal domain HPY07_08270 PF01565 FAD binding domain HPY07_08270 PF13183 4Fe-4S dicluster domain HPY07_08285 PF00691 OmpA family HPY07_08285 PF13488 Glycine zipper HPY07_08305 PF01259 SAICAR synthetase HPY07_08315 PF03949 Malic enzyme, NAD binding domain HPY07_08315 PF00390 Malic enzyme, N-terminal domain HPY07_08325 PF02698 DUF218 domain HPY07_08330 PF00990 Diguanylate cyclase, GGDEF domain HPY07_08330 PF08448 PAS fold HPY07_08335 PF00266 Aminotransferase class-V HPY07_08345 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY07_08350 PF00005 ABC transporter HPY07_08350 PF00664 ABC transporter transmembrane region HPY07_08355 PF00005 ABC transporter HPY07_08355 PF00664 ABC transporter transmembrane region HPY07_08360 PF01479 S4 domain HPY07_08360 PF00849 RNA pseudouridylate synthase HPY07_08365 PF01300 Telomere recombination HPY07_08370 PF02811 PHP domain HPY07_08375 PF08056 Tryptophan operon leader peptide HPY07_08380 PF04715 Anthranilate synthase component I, N terminal region HPY07_08380 PF00425 chorismate binding enzyme HPY07_08385 PF00117 Glutamine amidotransferase class-I HPY07_08390 PF00591 Glycosyl transferase family, a/b domain HPY07_08390 PF02885 Glycosyl transferase family, helical bundle domain HPY07_08395 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HPY07_08395 PF00218 Indole-3-glycerol phosphate synthase HPY07_08400 PF00291 Pyridoxal-phosphate dependent enzyme HPY07_08405 PF00290 Tryptophan synthase alpha chain HPY07_08410 PF00375 Sodium:dicarboxylate symporter family HPY07_08415 PF00265 Thymidine kinase HPY07_08420 PF01336 OB-fold nucleic acid binding domain HPY07_08420 PF02938 GAD domain HPY07_08420 PF00152 tRNA synthetases class II (D, K and N) HPY07_08425 PF01904 Protein of unknown function DUF72 HPY07_08430 PF13649 Methyltransferase domain HPY07_08435 PF08003 Protein of unknown function (DUF1698) HPY07_08440 PF18030 RimK PreATP-grasp domain HPY07_08440 PF08443 RimK-like ATP-grasp domain HPY07_08455 PF00266 Aminotransferase class-V HPY07_08465 PF00989 PAS fold HPY07_08465 PF00512 His Kinase A (phospho-acceptor) domain HPY07_08465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_08480 PF04994 TfoX C-terminal domain HPY07_08480 PF04993 TfoX N-terminal domain HPY07_08490 PF03956 Lysine exporter LysO HPY07_08500 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY07_08505 PF01380 SIS domain HPY07_08505 PF01418 Helix-turn-helix domain, rpiR family HPY07_08510 PF00171 Aldehyde dehydrogenase family HPY07_08510 PF00465 Iron-containing alcohol dehydrogenase HPY07_08515 PF00462 Glutaredoxin HPY07_08520 PF06826 Predicted Permease Membrane Region HPY07_08520 PF02080 TrkA-C domain HPY07_08525 PF10431 C-terminal, D2-small domain, of ClpB protein HPY07_08525 PF00004 ATPase family associated with various cellular activities (AAA) HPY07_08525 PF07724 AAA domain (Cdc48 subfamily) HPY07_08525 PF02861 Clp amino terminal domain, pathogenicity island component HPY07_08525 PF17871 AAA lid domain HPY07_08530 PF02617 ATP-dependent Clp protease adaptor protein ClpS HPY07_08535 PF00313 'Cold-shock' DNA-binding domain HPY07_08540 PF03971 Monomeric isocitrate dehydrogenase HPY07_08545 PF00849 RNA pseudouridylate synthase HPY07_08550 PF01502 Phosphoribosyl-AMP cyclohydrolase HPY07_08550 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HPY07_08555 PF00977 Histidine biosynthesis protein HPY07_08560 PF00977 Histidine biosynthesis protein HPY07_08565 PF00117 Glutamine amidotransferase class-I HPY07_08570 PF08645 Polynucleotide kinase 3 phosphatase HPY07_08570 PF00475 Imidazoleglycerol-phosphate dehydratase HPY07_08575 PF00155 Aminotransferase class I and II HPY07_08580 PF00815 Histidinol dehydrogenase HPY07_08585 PF08029 HisG, C-terminal domain HPY07_08585 PF01634 ATP phosphoribosyltransferase HPY07_08590 PF03553 Na+/H+ antiporter family HPY07_08595 PF00816 H-NS histone family HPY07_08600 PF00294 pfkB family carbohydrate kinase HPY07_08610 PF04356 Protein of unknown function (DUF489) HPY07_08615 PF08328 Adenylosuccinate lyase C-terminal HPY07_08615 PF00206 Lyase HPY07_08625 PF16036 Chalcone isomerase-like HPY07_08650 PF00106 short chain dehydrogenase HPY07_08660 PF01435 Peptidase family M48 HPY07_08675 PF08241 Methyltransferase domain HPY07_08680 PF00155 Aminotransferase class I and II HPY07_08685 PF04055 Radical SAM superfamily HPY07_08685 PF06968 Biotin and Thiamin Synthesis associated domain HPY07_08690 PF00202 Aminotransferase class-III HPY07_08695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY07_08695 PF02403 Seryl-tRNA synthetase N-terminal domain HPY07_08700 PF16193 AAA C-terminal domain HPY07_08700 PF00004 ATPase family associated with various cellular activities (AAA) HPY07_08700 PF12002 MgsA AAA+ ATPase C terminal HPY07_08705 PF03548 Outer membrane lipoprotein carrier protein LolA HPY07_08710 PF01043 SecA preprotein cross-linking domain HPY07_08710 PF02810 SEC-C motif HPY07_08710 PF07517 SecA DEAD-like domain HPY07_08710 PF07516 SecA Wing and Scaffold domain HPY07_08715 PF01207 Dihydrouridine synthase (Dus) HPY07_08720 PF05230 MASE2 domain HPY07_08720 PF00990 Diguanylate cyclase, GGDEF domain HPY07_08725 PF00005 ABC transporter HPY07_08730 PF02653 Branched-chain amino acid transport system / permease component HPY07_08740 PF09905 DNA-binding protein VF530 HPY07_08745 PF04217 Protein of unknown function, DUF412 HPY07_08750 PF00871 Acetokinase family HPY07_08755 PF07085 DRTGG domain HPY07_08755 PF01515 Phosphate acetyl/butaryl transferase HPY07_08760 PF13409 Glutathione S-transferase, N-terminal domain HPY07_08765 PF00005 ABC transporter HPY07_08765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY07_08770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY07_08770 PF00005 ABC transporter HPY07_08775 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_08775 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY07_08780 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_08785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY07_08795 PF00512 His Kinase A (phospho-acceptor) domain HPY07_08795 PF08448 PAS fold HPY07_08795 PF13188 PAS domain HPY07_08795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_08795 PF00072 Response regulator receiver domain HPY07_08800 PF02954 Bacterial regulatory protein, Fis family HPY07_08800 PF00072 Response regulator receiver domain HPY07_08800 PF00158 Sigma-54 interaction domain HPY07_08805 PF03707 Bacterial signalling protein N terminal repeat HPY07_08805 PF00563 EAL domain HPY07_08805 PF00990 Diguanylate cyclase, GGDEF domain HPY07_08805 PF13188 PAS domain HPY07_08810 PF00512 His Kinase A (phospho-acceptor) domain HPY07_08810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_08815 PF00512 His Kinase A (phospho-acceptor) domain HPY07_08815 PF00989 PAS fold HPY07_08815 PF13188 PAS domain HPY07_08815 PF13426 PAS domain HPY07_08815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_08825 PF00072 Response regulator receiver domain HPY07_08840 PF01300 Telomere recombination HPY07_08840 PF03481 Putative GTP-binding controlling metal-binding HPY07_08855 PF01161 Phosphatidylethanolamine-binding protein HPY07_08865 PF06483 Chitinase C HPY07_08865 PF00704 Glycosyl hydrolases family 18 HPY07_08880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY07_08880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY07_08885 PF01022 Bacterial regulatory protein, arsR family HPY07_08895 PF08448 PAS fold HPY07_08895 PF00990 Diguanylate cyclase, GGDEF domain HPY07_08905 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY07_08920 PF01037 Lrp/AsnC ligand binding domain HPY07_08920 PF13404 AsnC-type helix-turn-helix domain HPY07_08925 PF00291 Pyridoxal-phosphate dependent enzyme HPY07_08930 PF01343 Peptidase family S49 HPY07_08930 PF08496 Peptidase family S49 N-terminal HPY07_08935 PF00106 short chain dehydrogenase HPY07_08945 PF03692 Putative zinc- or iron-chelating domain HPY07_08950 PF03692 Putative zinc- or iron-chelating domain HPY07_08955 PF13662 Toprim domain HPY07_08955 PF02132 RecR protein HPY07_08960 PF02575 YbaB/EbfC DNA-binding family HPY07_08965 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HPY07_08965 PF12169 DNA polymerase III subunits gamma and tau domain III HPY07_08965 PF12170 DNA polymerase III tau subunit V interacting with alpha HPY07_08970 PF00156 Phosphoribosyl transferase domain HPY07_08975 PF04304 Protein of unknown function (DUF454) HPY07_08980 PF00072 Response regulator receiver domain HPY07_08985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_08985 PF03466 LysR substrate binding domain HPY07_08990 PF00881 Nitroreductase family HPY07_08995 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY07_08995 PF00378 Enoyl-CoA hydratase/isomerase HPY07_08995 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY07_09000 PF00108 Thiolase, N-terminal domain HPY07_09000 PF02803 Thiolase, C-terminal domain HPY07_09005 PF04542 Sigma-70 region 2 HPY07_09005 PF08281 Sigma-70, region 4 HPY07_09015 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY07_09020 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY07_09025 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY07_09030 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HPY07_09030 PF12557 Cob(I)alamin adenosyltransferase N terminal HPY07_09035 PF05170 AsmA family HPY07_09040 PF00485 Phosphoribulokinase / Uridine kinase family HPY07_09045 PF10609 NUBPL iron-transfer P-loop NTPase HPY07_09050 PF09334 tRNA synthetases class I (M) HPY07_09050 PF01588 Putative tRNA binding domain HPY07_09060 PF01048 Phosphorylase superfamily HPY07_09065 PF00403 Heavy-metal-associated domain HPY07_09070 PF01743 Poly A polymerase head domain HPY07_09070 PF00571 CBS domain HPY07_09075 PF00990 Diguanylate cyclase, GGDEF domain HPY07_09075 PF07694 5TMR of 5TMR-LYT HPY07_09080 PF02391 MoaE protein HPY07_09085 PF02597 ThiS family HPY07_09090 PF01967 MoaC family HPY07_09095 PF00994 Probable molybdopterin binding domain HPY07_09100 PF04055 Radical SAM superfamily HPY07_09100 PF06463 Molybdenum Cofactor Synthesis C HPY07_09105 PF01933 Uncharacterised protein family UPF0052 HPY07_09110 PF01627 Hpt domain HPY07_09115 PF02954 Bacterial regulatory protein, Fis family HPY07_09115 PF00072 Response regulator receiver domain HPY07_09115 PF00158 Sigma-54 interaction domain HPY07_09120 PF00271 Helicase conserved C-terminal domain HPY07_09120 PF04851 Type III restriction enzyme, res subunit HPY07_09120 PF02151 UvrB/uvrC motif HPY07_09120 PF12344 Ultra-violet resistance protein B HPY07_09120 PF17757 UvrB interaction domain HPY07_09130 PF02508 Rnf-Nqr subunit, membrane protein HPY07_09135 PF04060 Putative Fe-S cluster HPY07_09140 PF10531 SLBB domain HPY07_09140 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HPY07_09140 PF13375 RnfC Barrel sandwich hybrid domain HPY07_09140 PF12838 4Fe-4S dicluster domain HPY07_09145 PF03116 NQR2, RnfD, RnfE family HPY07_09150 PF04205 FMN-binding domain HPY07_09155 PF02508 Rnf-Nqr subunit, membrane protein HPY07_09160 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY07_09160 PF00633 Helix-hairpin-helix motif HPY07_09160 PF10576 Iron-sulfur binding domain of endonuclease III HPY07_09165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY07_09170 PF10952 Protein of unknown function (DUF2753) HPY07_09175 PF00691 OmpA family HPY07_09175 PF18393 MotY N-terminal domain HPY07_09180 PF00929 Exonuclease HPY07_09185 PF13726 Na+-H+ antiporter family HPY07_09185 PF03553 Na+/H+ antiporter family HPY07_09190 PF00156 Phosphoribosyl transferase domain HPY07_09195 PF02674 Colicin V production protein HPY07_09200 PF05036 Sporulation related domain HPY07_09205 PF08245 Mur ligase middle domain HPY07_09205 PF02875 Mur ligase family, glutamate ligase domain HPY07_09210 PF01039 Carboxyl transferase domain HPY07_09210 PF17848 Acetyl-coA carboxylase zinc finger domain HPY07_09215 PF01416 tRNA pseudouridine synthase HPY07_09225 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HPY07_09225 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY07_09230 PF00367 phosphotransferase system, EIIB HPY07_09230 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY07_09230 PF02378 Phosphotransferase system, EIIC HPY07_09235 PF01979 Amidohydrolase family HPY07_09240 PF01047 MarR family HPY07_09240 PF00480 ROK family HPY07_09245 PF02254 TrkA-N domain HPY07_09245 PF00999 Sodium/hydrogen exchanger family HPY07_09250 PF13537 Glutamine amidotransferase domain HPY07_09250 PF00733 Asparagine synthase HPY07_09255 PF02357 Transcription termination factor nusG HPY07_09260 PF00854 POT family HPY07_09265 PF00762 Ferrochelatase HPY07_09270 PF05191 Adenylate kinase, active site lid HPY07_09275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_09275 PF00183 Hsp90 protein HPY07_09280 PF00486 Transcriptional regulatory protein, C terminal HPY07_09285 PF17323 Trans-membrane regulatory protein ToxS HPY07_09295 PF12850 Calcineurin-like phosphoesterase superfamily domain HPY07_09300 PF01370 NAD dependent epimerase/dehydratase family HPY07_09300 PF08338 Domain of unknown function (DUF1731) HPY07_09305 PF00106 short chain dehydrogenase HPY07_09310 PF00085 Thioredoxin HPY07_09315 PF01145 SPFH domain / Band 7 family HPY07_09315 PF16200 C-terminal region of band_7 HPY07_09320 PF01957 NfeD-like C-terminal, partner-binding HPY07_09325 PF13411 MerR HTH family regulatory protein HPY07_09335 PF13609 Gram-negative porin HPY07_09340 PF12826 Helix-hairpin-helix motif HPY07_09340 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HPY07_09340 PF03120 NAD-dependent DNA ligase OB-fold domain HPY07_09340 PF01653 NAD-dependent DNA ligase adenylation domain HPY07_09340 PF00533 BRCA1 C Terminus (BRCT) domain HPY07_09345 PF04354 ZipA, C-terminal FtsZ-binding domain HPY07_09355 PF00291 Pyridoxal-phosphate dependent enzyme HPY07_09360 PF00381 PTS HPr component phosphorylation site HPY07_09365 PF02896 PEP-utilising enzyme, TIM barrel domain HPY07_09365 PF00391 PEP-utilising enzyme, mobile domain HPY07_09365 PF05524 PEP-utilising enzyme, N-terminal HPY07_09370 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY07_09375 PF01494 FAD binding domain HPY07_09380 PF01938 TRAM domain HPY07_09380 PF00919 Uncharacterized protein family UPF0004 HPY07_09380 PF04055 Radical SAM superfamily HPY07_09385 PF02562 PhoH-like protein HPY07_09390 PF02130 Uncharacterized protein family UPF0054 HPY07_09395 PF03471 Transporter associated domain HPY07_09395 PF00571 CBS domain HPY07_09400 PF00795 Carbon-nitrogen hydrolase HPY07_09405 PF07295 Zinc-ribbon containing domain HPY07_09410 PF08264 Anticodon-binding domain of tRNA HPY07_09410 PF00133 tRNA synthetases class I (I, L, M and V) HPY07_09410 PF13603 Leucyl-tRNA synthetase, Domain 2 HPY07_09415 PF04390 Lipopolysaccharide-assembly HPY07_09420 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HPY07_09420 PF06144 DNA polymerase III, delta subunit HPY07_09430 PF02590 Predicted SPOUT methyltransferase HPY07_09435 PF03717 Penicillin-binding Protein dimerisation domain HPY07_09435 PF00905 Penicillin binding protein transpeptidase domain HPY07_09440 PF01098 Cell cycle protein HPY07_09445 PF03330 Lytic transglycolase HPY07_09445 PF05036 Sporulation related domain HPY07_09450 PF00768 D-alanyl-D-alanine carboxypeptidase HPY07_09450 PF07943 Penicillin-binding protein 5, C-terminal domain HPY07_09455 PF04359 Protein of unknown function (DUF493) HPY07_09460 PF03099 Biotin/lipoate A/B protein ligase family HPY07_09465 PF04055 Radical SAM superfamily HPY07_09465 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HPY07_09475 PF00464 Serine hydroxymethyltransferase HPY07_09495 PF13807 G-rich domain on putative tyrosine kinase HPY07_09495 PF02706 Chain length determinant protein HPY07_09495 PF13614 AAA domain HPY07_09500 PF02563 Polysaccharide biosynthesis/export protein HPY07_09500 PF10531 SLBB domain HPY07_09500 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HPY07_09510 PF02397 Bacterial sugar transferase HPY07_09525 PF17945 Beta/Gamma crystallin HPY07_09525 PF12561 ToxR activated gene A lipoprotein domain HPY07_09540 PF03808 Glycosyl transferase WecB/TagA/CpsF family HPY07_09550 PF00534 Glycosyl transferases group 1 HPY07_09550 PF00862 Sucrose synthase HPY07_09560 PF00132 Bacterial transferase hexapeptide (six repeats) HPY07_09580 PF14602 Hexapeptide repeat of succinyl-transferase HPY07_09580 PF12464 Maltose acetyltransferase HPY07_09585 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY07_09585 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HPY07_09585 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY07_09590 PF02350 UDP-N-acetylglucosamine 2-epimerase HPY07_09595 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY07_09600 PF00873 AcrB/AcrD/AcrF family HPY07_09605 PF13533 Biotin-lipoyl like HPY07_09630 PF00128 Alpha amylase, catalytic domain HPY07_09630 PF16657 Maltogenic Amylase, C-terminal domain HPY07_09635 PF02378 Phosphotransferase system, EIIC HPY07_09635 PF00367 phosphotransferase system, EIIB HPY07_09640 PF00356 Bacterial regulatory proteins, lacI family HPY07_09650 PF09383 NIL domain HPY07_09650 PF00005 ABC transporter HPY07_09655 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_09660 PF03180 NLPA lipoprotein HPY07_09665 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HPY07_09670 PF07348 Syd protein (SUKH-2) HPY07_09675 PF14489 QueF-like protein HPY07_09675 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HPY07_09685 PF00990 Diguanylate cyclase, GGDEF domain HPY07_09690 PF03641 Possible lysine decarboxylase HPY07_09690 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HPY07_09690 PF11892 Domain of unknown function (DUF3412) HPY07_09695 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY07_09695 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY07_09700 PF04241 Protein of unknown function (DUF423) HPY07_09705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_09705 PF03466 LysR substrate binding domain HPY07_09710 PF02926 THUMP domain HPY07_09710 PF02568 Thiamine biosynthesis protein (ThiI) HPY07_09715 PF00691 OmpA family HPY07_09715 PF13677 Membrane MotB of proton-channel complex MotA/MotB HPY07_09720 PF01618 MotA/TolQ/ExbB proton channel family HPY07_09725 PF02609 Exonuclease VII small subunit HPY07_09730 PF00348 Polyprenyl synthetase HPY07_09735 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HPY07_09735 PF02780 Transketolase, C-terminal domain HPY07_09735 PF02779 Transketolase, pyrimidine binding domain HPY07_09740 PF00849 RNA pseudouridylate synthase HPY07_09745 PF04287 tRNA pseudouridine synthase C HPY07_09760 PF13302 Acetyltransferase (GNAT) domain HPY07_09770 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HPY07_09775 PF03806 AbgT putative transporter family HPY07_09780 PF00444 Ribosomal protein L36 HPY07_09785 PF01197 Ribosomal protein L31 HPY07_09790 PF01980 tRNA-methyltransferase O HPY07_09790 PF18389 TrmO C-terminal domain HPY07_09795 PF03129 Anticodon binding domain HPY07_09795 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY07_09795 PF04073 Aminoacyl-tRNA editing domain HPY07_09805 PF06786 Uncharacterised protein family (UPF0253) HPY07_09815 PF02769 AIR synthase related protein, C-terminal domain HPY07_09815 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HPY07_09815 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HPY07_09820 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY07_09820 PF01464 Transglycosylase SLT domain HPY07_09825 PF14437 MafB19-like deaminase HPY07_09830 PF03806 AbgT putative transporter family HPY07_09855 PF07963 Prokaryotic N-terminal methylation motif HPY07_09855 PF00114 Pilin (bacterial filament) HPY07_09860 PF01556 DnaJ C terminal domain HPY07_09860 PF00226 DnaJ domain HPY07_09860 PF00684 DnaJ central domain HPY07_09865 PF00012 Hsp70 protein HPY07_09870 PF01025 GrpE HPY07_09875 PF01513 ATP-NAD kinase HPY07_09880 PF02463 RecF/RecN/SMC N terminal domain HPY07_09885 PF04355 SmpA / OmlA family HPY07_09890 PF03658 RnfH family Ubiquitin HPY07_09895 PF03364 Polyketide cyclase / dehydrase and lipid transport HPY07_09900 PF01668 SmpB protein HPY07_09955 PF00037 4Fe-4S binding domain HPY07_09955 PF11953 Domain of unknown function (DUF3470) HPY07_09960 PF00588 SpoU rRNA Methylase family HPY07_09960 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY07_09970 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase HPY07_09975 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase HPY07_09980 PF04223 Citrate lyase, alpha subunit (CitF) HPY07_09985 PF03328 HpcH/HpaI aldolase/citrate lyase family HPY07_09990 PF06857 Malonate decarboxylase delta subunit (MdcD) HPY07_09995 PF08218 Citrate lyase ligase C-terminal domain HPY07_10000 PF03390 2-hydroxycarboxylate transporter family HPY07_10005 PF04277 Oxaloacetate decarboxylase, gamma chain HPY07_10010 PF00682 HMGL-like HPY07_10010 PF00364 Biotin-requiring enzyme HPY07_10010 PF02436 Conserved carboxylase domain HPY07_10015 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HPY07_10020 PF17203 Single cache domain 3 HPY07_10020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_10025 PF12431 Transcriptional regulator HPY07_10025 PF00072 Response regulator receiver domain HPY07_10045 PF01266 FAD dependent oxidoreductase HPY07_10050 PF01235 Sodium:alanine symporter family HPY07_10055 PF14706 Transposase DNA-binding HPY07_10055 PF02281 Transposase Tn5 dimerisation domain HPY07_10055 PF01609 Transposase DDE domain HPY07_10060 PF00753 Metallo-beta-lactamase superfamily HPY07_10060 PF14863 Alkyl sulfatase dimerisation HPY07_10060 PF14864 Alkyl sulfatase C-terminal HPY07_10065 PF03466 LysR substrate binding domain HPY07_10065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_10070 PF01648 4'-phosphopantetheinyl transferase superfamily HPY07_10070 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HPY07_10075 PF00005 ABC transporter HPY07_10080 PF01032 FecCD transport family HPY07_10085 PF01032 FecCD transport family HPY07_10090 PF01497 Periplasmic binding protein HPY07_10105 PF00425 chorismate binding enzyme HPY07_10110 PF00501 AMP-binding enzyme HPY07_10110 PF13193 AMP-binding enzyme C-terminal domain HPY07_10115 PF00550 Phosphopantetheine attachment site HPY07_10115 PF00857 Isochorismatase family HPY07_10120 PF01184 GPR1/FUN34/yaaH family HPY07_10125 PF06483 Chitinase C HPY07_10125 PF00704 Glycosyl hydrolases family 18 HPY07_10130 PF01510 N-acetylmuramoyl-L-alanine amidase HPY07_10135 PF05199 GMC oxidoreductase HPY07_10135 PF00732 GMC oxidoreductase HPY07_10140 PF02540 NAD synthase HPY07_10140 PF00117 Glutamine amidotransferase class-I HPY07_10140 PF00958 GMP synthase C terminal domain HPY07_10145 PF00571 CBS domain HPY07_10145 PF00478 IMP dehydrogenase / GMP reductase domain HPY07_10150 PF13742 OB-fold nucleic acid binding domain HPY07_10150 PF02601 Exonuclease VII, large subunit HPY07_10165 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HPY07_10165 PF01926 50S ribosome-binding GTPase HPY07_10170 PF13360 PQQ-like domain HPY07_10175 PF09976 Tetratricopeptide repeat-like domain HPY07_10180 PF13393 Histidyl-tRNA synthetase HPY07_10180 PF03129 Anticodon binding domain HPY07_10185 PF04551 GcpE protein HPY07_10190 PF13464 Domain of unknown function (DUF4115) HPY07_10195 PF04055 Radical SAM superfamily HPY07_10200 PF00334 Nucleoside diphosphate kinase HPY07_10205 PF12404 Peptidase HPY07_10205 PF00883 Cytosol aminopeptidase family, catalytic domain HPY07_10210 PF04384 Iron-sulphur cluster assembly HPY07_10215 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY07_10220 PF00012 Hsp70 protein HPY07_10225 PF00226 DnaJ domain HPY07_10225 PF07743 HSCB C-terminal oligomerisation domain HPY07_10230 PF01521 Iron-sulphur cluster biosynthesis HPY07_10235 PF01592 NifU-like N terminal domain HPY07_10240 PF00266 Aminotransferase class-V HPY07_10245 PF02082 Transcriptional regulator HPY07_10250 PF00588 SpoU rRNA Methylase family HPY07_10255 PF00459 Inositol monophosphatase family HPY07_10260 PF07549 SecD/SecF GG Motif HPY07_10260 PF02355 Protein export membrane protein HPY07_10265 PF02355 Protein export membrane protein HPY07_10265 PF07549 SecD/SecF GG Motif HPY07_10265 PF13721 SecD export protein N-terminal TM region HPY07_10270 PF02699 Preprotein translocase subunit HPY07_10275 PF01702 Queuine tRNA-ribosyltransferase HPY07_10280 PF02547 Queuosine biosynthesis protein HPY07_10285 PF00571 CBS domain HPY07_10290 PF00463 Isocitrate lyase family HPY07_10295 PF01274 Malate synthase HPY07_10300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_10300 PF03466 LysR substrate binding domain HPY07_10305 PF10417 C-terminal domain of 1-Cys peroxiredoxin HPY07_10305 PF00578 AhpC/TSA family HPY07_10310 PF03932 CutC family HPY07_10315 PF03976 Polyphosphate kinase 2 (PPK2) HPY07_10320 PF01895 PhoU domain HPY07_10325 PF00005 ABC transporter HPY07_10330 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_10335 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_10340 PF13090 Polyphosphate kinase C-terminal domain 2 HPY07_10340 PF02503 Polyphosphate kinase middle domain HPY07_10340 PF17941 Polyphosphate kinase C-terminal domain 1 HPY07_10340 PF13089 Polyphosphate kinase N-terminal domain HPY07_10345 PF02541 Ppx/GppA phosphatase family HPY07_10350 PF12849 PBP superfamily domain HPY07_10355 PF11808 Phosphate regulon sensor protein PhoR HPY07_10355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_10355 PF00989 PAS fold HPY07_10355 PF00512 His Kinase A (phospho-acceptor) domain HPY07_10360 PF00486 Transcriptional regulatory protein, C terminal HPY07_10360 PF00072 Response regulator receiver domain HPY07_10365 PF04381 Putative exonuclease, RdgC HPY07_10375 PF00037 4Fe-4S binding domain HPY07_10380 PF00881 Nitroreductase family HPY07_10420 PF17871 AAA lid domain HPY07_10420 PF00004 ATPase family associated with various cellular activities (AAA) HPY07_10420 PF07724 AAA domain (Cdc48 subfamily) HPY07_10420 PF10431 C-terminal, D2-small domain, of ClpB protein HPY07_10420 PF02861 Clp amino terminal domain, pathogenicity island component HPY07_10430 PF01479 S4 domain HPY07_10430 PF00849 RNA pseudouridylate synthase HPY07_10435 PF13525 Outer membrane lipoprotein HPY07_10440 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY07_10445 PF01817 Chorismate mutase type II HPY07_10445 PF00800 Prephenate dehydratase HPY07_10450 PF13416 Bacterial extracellular solute-binding protein HPY07_10455 PF00563 EAL domain HPY07_10455 PF00990 Diguanylate cyclase, GGDEF domain HPY07_10460 PF01931 Protein of unknown function DUF84 HPY07_10465 PF01371 Trp repressor protein HPY07_10470 PF01464 Transglycosylase SLT domain HPY07_10470 PF14718 Soluble lytic murein transglycosylase L domain HPY07_10475 PF00005 ABC transporter HPY07_10475 PF12848 ABC transporter HPY07_10480 PF07238 PilZ domain HPY07_10485 PF02153 Prephenate dehydrogenase HPY07_10485 PF01817 Chorismate mutase type II HPY07_10490 PF00793 DAHP synthetase I family HPY07_10495 PF06580 Histidine kinase HPY07_10495 PF07694 5TMR of 5TMR-LYT HPY07_10500 PF04397 LytTr DNA-binding domain HPY07_10500 PF00072 Response regulator receiver domain HPY07_10505 PF00933 Glycosyl hydrolase family 3 N terminal domain HPY07_10510 PF03702 Anhydro-N-acetylmuramic acid kinase HPY07_10515 PF13580 SIS domain HPY07_10530 PF02554 Carbon starvation protein CstA HPY07_10535 PF02401 LytB protein HPY07_10540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY07_10545 PF01252 Signal peptidase (SPase) II HPY07_10550 PF08264 Anticodon-binding domain of tRNA HPY07_10550 PF00133 tRNA synthetases class I (I, L, M and V) HPY07_10550 PF06827 Zinc finger found in FPG and IleRS HPY07_10555 PF01687 Riboflavin kinase HPY07_10555 PF06574 FAD synthetase HPY07_10560 PF03023 Lipid II flippase MurJ HPY07_10565 PF01649 Ribosomal protein S20 HPY07_10570 PF01022 Bacterial regulatory protein, arsR family HPY07_10575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_10575 PF03466 LysR substrate binding domain HPY07_10580 PF02690 Na+/Pi-cotransporter HPY07_10585 PF00303 Thymidylate synthase HPY07_10590 PF01790 Prolipoprotein diacylglyceryl transferase HPY07_10595 PF01925 Sulfite exporter TauE/SafE HPY07_10600 PF05524 PEP-utilising enzyme, N-terminal HPY07_10600 PF02896 PEP-utilising enzyme, TIM barrel domain HPY07_10600 PF01590 GAF domain HPY07_10600 PF00391 PEP-utilising enzyme, mobile domain HPY07_10605 PF00293 NUDIX domain HPY07_10610 PF02976 DNA mismatch repair enzyme MutH HPY07_10615 PF00248 Aldo/keto reductase family HPY07_10625 PF02954 Bacterial regulatory protein, Fis family HPY07_10625 PF00158 Sigma-54 interaction domain HPY07_10625 PF00072 Response regulator receiver domain HPY07_10630 PF01336 OB-fold nucleic acid binding domain HPY07_10630 PF00152 tRNA synthetases class II (D, K and N) HPY07_10640 PF05525 Branched-chain amino acid transport protein HPY07_10645 PF05175 Methyltransferase small domain HPY07_10650 PF00270 DEAD/DEAH box helicase HPY07_10650 PF00271 Helicase conserved C-terminal domain HPY07_10655 PF00009 Elongation factor Tu GTP binding domain HPY07_10655 PF03144 Elongation factor Tu domain 2 HPY07_10655 PF16658 Class II release factor RF3, C-terminal domain HPY07_10660 PF03707 Bacterial signalling protein N terminal repeat HPY07_10660 PF00563 EAL domain HPY07_10660 PF00990 Diguanylate cyclase, GGDEF domain HPY07_10675 PF13508 Acetyltransferase (GNAT) domain HPY07_10680 PF02036 SCP-2 sterol transfer family HPY07_10685 PF00563 EAL domain HPY07_10685 PF03707 Bacterial signalling protein N terminal repeat HPY07_10685 PF00990 Diguanylate cyclase, GGDEF domain HPY07_10690 PF01136 Peptidase family U32 HPY07_10695 PF01136 Peptidase family U32 HPY07_10710 PF07719 Tetratricopeptide repeat HPY07_10710 PF13181 Tetratricopeptide repeat HPY07_10715 PF00575 S1 RNA binding domain HPY07_10715 PF03725 3' exoribonuclease family, domain 2 HPY07_10715 PF01138 3' exoribonuclease family, domain 1 HPY07_10715 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HPY07_10715 PF00013 KH domain HPY07_10720 PF00312 Ribosomal protein S15 HPY07_10725 PF09157 Pseudouridine synthase II TruB, C-terminal HPY07_10725 PF16198 tRNA pseudouridylate synthase B C-terminal domain HPY07_10725 PF01509 TruB family pseudouridylate synthase (N terminal domain) HPY07_10730 PF02033 Ribosome-binding factor A HPY07_10735 PF08364 Bacterial translation initiation factor IF-2 associated region HPY07_10735 PF11987 Translation-initiation factor 2 HPY07_10735 PF00009 Elongation factor Tu GTP binding domain HPY07_10735 PF04760 Translation initiation factor IF-2, N-terminal region HPY07_10740 PF13184 NusA-like KH domain HPY07_10740 PF08529 NusA N-terminal domain HPY07_10740 PF00575 S1 RNA binding domain HPY07_10745 PF17384 RimP C-terminal SH3 domain HPY07_10745 PF02576 RimP N-terminal domain HPY07_10760 PF03840 Preprotein translocase SecG subunit HPY07_10765 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY07_10765 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY07_10765 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY07_10765 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY07_10770 PF00809 Pterin binding enzyme HPY07_10775 PF00004 ATPase family associated with various cellular activities (AAA) HPY07_10775 PF01434 Peptidase family M41 HPY07_10775 PF17862 AAA+ lid domain HPY07_10775 PF06480 FtsH Extracellular HPY07_10780 PF01728 FtsJ-like methyltransferase HPY07_10785 PF01985 CRS1 / YhbY (CRM) domain HPY07_10790 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY07_10790 PF03449 Transcription elongation factor, N-terminal HPY07_10795 PF13609 Gram-negative porin HPY07_10800 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HPY07_10805 PF01479 S4 domain HPY07_10805 PF00579 tRNA synthetases class I (W and Y) HPY07_10810 PF01551 Peptidase family M23 HPY07_10810 PF04225 Opacity-associated protein A LysM-like domain HPY07_10815 PF00873 AcrB/AcrD/AcrF family HPY07_10825 PF01521 Iron-sulphur cluster biosynthesis HPY07_10830 PF00202 Aminotransferase class-III HPY07_10835 PF01594 AI-2E family transporter HPY07_10840 PF08468 Methyltransferase small domain N-terminal HPY07_10840 PF05175 Methyltransferase small domain HPY07_10845 PF00672 HAMP domain HPY07_10845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_10845 PF00512 His Kinase A (phospho-acceptor) domain HPY07_10845 PF17149 Periplasmic sensor domain found in signal transduction proteins HPY07_10845 PF01627 Hpt domain HPY07_10845 PF00072 Response regulator receiver domain HPY07_10850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY07_10855 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_10860 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_10860 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY07_10865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY07_10865 PF00005 ABC transporter HPY07_10870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY07_10870 PF00005 ABC transporter HPY07_10880 PF01869 BadF/BadG/BcrA/BcrD ATPase family HPY07_10885 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY07_10885 PF02838 Glycosyl hydrolase family 20, domain 2 HPY07_10890 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain HPY07_10890 PF06165 Glycosyltransferase family 36 HPY07_10895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY07_10895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY07_10895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY07_10895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY07_10900 PF08402 TOBE domain HPY07_10900 PF00005 ABC transporter HPY07_10910 PF13416 Bacterial extracellular solute-binding protein HPY07_10915 PF00909 Ammonium Transporter Family HPY07_10920 PF00543 Nitrogen regulatory protein P-II HPY07_10925 PF06062 Uncharacterised protein family (UPF0231) HPY07_10930 PF11791 Aconitate B N-terminal domain HPY07_10930 PF06434 Aconitate hydratase 2 N-terminus HPY07_10930 PF00330 Aconitase family (aconitate hydratase) HPY07_10935 PF01734 Patatin-like phospholipase HPY07_10940 PF00905 Penicillin binding protein transpeptidase domain HPY07_10940 PF14814 Bifunctional transglycosylase second domain HPY07_10940 PF00912 Transglycosylase HPY07_10945 PF00270 DEAD/DEAH box helicase HPY07_10945 PF00271 Helicase conserved C-terminal domain HPY07_10945 PF08482 ATP-dependent helicase C-terminal HPY07_10945 PF04408 Helicase associated domain (HA2) HPY07_10955 PF17746 SfsA N-terminal OB domain HPY07_10955 PF03749 Sugar fermentation stimulation protein RE domain HPY07_10960 PF01258 Prokaryotic dksA/traR C4-type zinc finger HPY07_10965 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY07_10970 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY07_10970 PF12626 Polymerase A arginine-rich C-terminus HPY07_10970 PF01743 Poly A polymerase head domain HPY07_10975 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY07_10980 PF02548 Ketopantoate hydroxymethyltransferase HPY07_10985 PF02569 Pantoate-beta-alanine ligase HPY07_10990 PF01061 ABC-2 type transporter HPY07_10995 PF00005 ABC transporter HPY07_11000 PF00916 Sulfate permease family HPY07_11000 PF01740 STAS domain HPY07_11005 PF00484 Carbonic anhydrase HPY07_11010 PF00156 Phosphoribosyl transferase domain HPY07_11015 PF00440 Bacterial regulatory proteins, tetR family HPY07_11020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY07_11025 PF04348 LppC putative lipoprotein HPY07_11030 PF02021 Uncharacterised protein family UPF0102 HPY07_11035 PF13580 SIS domain HPY07_11040 PF04972 BON domain HPY07_11045 PF04386 Stringent starvation protein B HPY07_11050 PF02798 Glutathione S-transferase, N-terminal domain HPY07_11050 PF00043 Glutathione S-transferase, C-terminal domain HPY07_11055 PF02167 Cytochrome C1 family HPY07_11060 PF00032 Cytochrome b(C-terminal)/b6/petD HPY07_11060 PF00033 Cytochrome b/b6/petB HPY07_11065 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HPY07_11065 PF00355 Rieske [2Fe-2S] domain HPY07_11070 PF00380 Ribosomal protein S9/S16 HPY07_11075 PF00572 Ribosomal protein L13 HPY07_11080 PF03969 AFG1-like ATPase HPY07_11090 PF00595 PDZ domain HPY07_11095 PF13180 PDZ domain HPY07_11100 PF01245 Ribosomal protein L19 HPY07_11105 PF01746 tRNA (Guanine-1)-methyltransferase HPY07_11110 PF01782 RimM N-terminal domain HPY07_11110 PF05239 PRC-barrel domain HPY07_11115 PF00886 Ribosomal protein S16 HPY07_11120 PF02881 SRP54-type protein, helical bundle domain HPY07_11120 PF02978 Signal peptide binding domain HPY07_11120 PF00448 SRP54-type protein, GTPase domain HPY07_11125 PF01578 Cytochrome C assembly protein HPY07_11130 PF03471 Transporter associated domain HPY07_11130 PF00571 CBS domain HPY07_11130 PF01595 Cyclin M transmembrane N-terminal domain HPY07_11135 PF02664 S-Ribosylhomocysteinase (LuxS) HPY07_11140 PF04262 Glutamate-cysteine ligase HPY07_11145 PF00675 Insulinase (Peptidase family M16) HPY07_11145 PF05193 Peptidase M16 inactive domain HPY07_11150 PF09335 SNARE associated Golgi protein HPY07_11160 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HPY07_11165 PF00364 Biotin-requiring enzyme HPY07_11165 PF00682 HMGL-like HPY07_11165 PF02436 Conserved carboxylase domain HPY07_11170 PF04277 Oxaloacetate decarboxylase, gamma chain HPY07_11215 PF02599 Global regulator protein family HPY07_11220 PF00696 Amino acid kinase family HPY07_11220 PF13840 ACT domain HPY07_11220 PF01842 ACT domain HPY07_11225 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY07_11225 PF02272 DHHA1 domain HPY07_11225 PF01411 tRNA synthetases class II (A) HPY07_11230 PF02631 RecX family HPY07_11235 PF00154 recA bacterial DNA recombination protein HPY07_11240 PF02464 Competence-damaged protein HPY07_11245 PF00005 ABC transporter HPY07_11245 PF12857 TOBE-like domain HPY07_11250 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_11255 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_11265 PF00291 Pyridoxal-phosphate dependent enzyme HPY07_11270 PF00488 MutS domain V HPY07_11270 PF05190 MutS family domain IV HPY07_11270 PF05192 MutS domain III HPY07_11270 PF05188 MutS domain II HPY07_11270 PF01624 MutS domain I HPY07_11275 PF00140 Sigma-70 factor, region 1.2 HPY07_11275 PF04542 Sigma-70 region 2 HPY07_11275 PF04539 Sigma-70 region 3 HPY07_11275 PF04545 Sigma-70, region 4 HPY07_11280 PF01551 Peptidase family M23 HPY07_11280 PF01476 LysM domain HPY07_11290 PF01975 Survival protein SurE HPY07_11295 PF01142 tRNA pseudouridine synthase D (TruD) HPY07_11300 PF02542 YgbB family HPY07_11305 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HPY07_11310 PF04977 Septum formation initiator HPY07_11315 PF02673 Bacitracin resistance protein BacA HPY07_11320 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY07_11325 PF02152 Dihydroneopterin aldolase HPY07_11330 PF02660 Glycerol-3-phosphate acyltransferase HPY07_11335 PF00561 alpha/beta hydrolase fold HPY07_11340 PF00814 Glycoprotease family HPY07_11345 PF01165 Ribosomal protein S21 HPY07_11350 PF09424 Yqey-like protein HPY07_11355 PF08278 DNA primase DnaG DnaB-binding HPY07_11355 PF01807 CHC2 zinc finger HPY07_11355 PF08275 DNA primase catalytic core, N-terminal domain HPY07_11355 PF10410 DnaB-helicase binding domain of primase HPY07_11360 PF04546 Sigma-70, non-essential region HPY07_11360 PF00140 Sigma-70 factor, region 1.2 HPY07_11360 PF04542 Sigma-70 region 2 HPY07_11360 PF04545 Sigma-70, region 4 HPY07_11360 PF04539 Sigma-70 region 3 HPY07_11360 PF03979 Sigma-70 factor, region 1.1 HPY07_11375 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY07_11380 PF01380 SIS domain HPY07_11385 PF08220 DeoR-like helix-turn-helix domain HPY07_11385 PF00455 DeoR C terminal sensor domain HPY07_11390 PF02887 Pyruvate kinase, alpha/beta domain HPY07_11390 PF00224 Pyruvate kinase, barrel domain HPY07_11395 PF04402 Protein of unknown function (DUF541) HPY07_11400 PF03466 LysR substrate binding domain HPY07_11400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_11405 PF01810 LysE type translocator HPY07_11410 PF00924 Mechanosensitive ion channel HPY07_11410 PF05552 Conserved TM helix HPY07_11415 PF01116 Fructose-bisphosphate aldolase class-II HPY07_11420 PF00162 Phosphoglycerate kinase HPY07_11425 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY07_11425 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY07_11430 PF07715 TonB-dependent Receptor Plug Domain HPY07_11430 PF00593 TonB dependent receptor HPY07_11435 PF03466 LysR substrate binding domain HPY07_11435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_11440 PF02779 Transketolase, pyrimidine binding domain HPY07_11440 PF00456 Transketolase, thiamine diphosphate binding domain HPY07_11440 PF02780 Transketolase, C-terminal domain HPY07_11445 PF02772 S-adenosylmethionine synthetase, central domain HPY07_11445 PF00438 S-adenosylmethionine synthetase, N-terminal domain HPY07_11445 PF02773 S-adenosylmethionine synthetase, C-terminal domain HPY07_11450 PF17283 SprT-like zinc ribbon domain HPY07_11450 PF10263 SprT-like family HPY07_11455 PF04231 Endonuclease I HPY07_11460 PF04452 RNA methyltransferase HPY07_11465 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HPY07_11465 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HPY07_11470 PF02622 Uncharacterized ACR, COG1678 HPY07_11475 PF03652 Holliday junction resolvase HPY07_11480 PF01479 S4 domain HPY07_11480 PF00579 tRNA synthetases class I (W and Y) HPY07_11490 PF00437 Type II/IV secretion system protein HPY07_11495 PF00437 Type II/IV secretion system protein HPY07_11500 PF01168 Alanine racemase, N-terminal domain HPY07_11505 PF14748 Pyrroline-5-carboxylate reductase dimerisation HPY07_11505 PF03807 NADP oxidoreductase coenzyme F420-dependent HPY07_11510 PF02325 YGGT family HPY07_11515 PF02594 Uncharacterised ACR, YggU family COG1872 HPY07_11525 PF01725 Ham1 family HPY07_11530 PF04055 Radical SAM superfamily HPY07_11530 PF06969 HemN C-terminal domain HPY07_11535 PF04960 Glutaminase HPY07_11540 PF02390 Putative methyltransferase HPY07_11545 PF00633 Helix-hairpin-helix motif HPY07_11545 PF10576 Iron-sulfur binding domain of endonuclease III HPY07_11545 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY07_11545 PF14815 NUDIX domain HPY07_11550 PF04362 Bacterial Fe(2+) trafficking HPY07_11555 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HPY07_11555 PF01464 Transglycosylase SLT domain HPY07_11580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_11580 PF00672 HAMP domain HPY07_11580 PF17200 Single Cache domain 2 HPY07_11610 PF05099 Tellurite resistance protein TerB HPY07_11610 PF00226 DnaJ domain HPY07_11615 PF04453 LPS transport system D HPY07_11615 PF03968 OstA-like protein HPY07_11620 PF09312 SurA N-terminal domain HPY07_11625 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HPY07_11630 PF00398 Ribosomal RNA adenine dimethylase HPY07_11635 PF04379 ApaG domain HPY07_11640 PF00149 Calcineurin-like phosphoesterase HPY07_11645 PF00186 Dihydrofolate reductase HPY07_11650 PF12821 Threonine/Serine exporter, ThrE HPY07_11655 PF06738 Putative threonine/serine exporter HPY07_11660 PF01018 GTP1/OBG HPY07_11660 PF01926 50S ribosome-binding GTPase HPY07_11665 PF01016 Ribosomal L27 protein HPY07_11670 PF00829 Ribosomal prokaryotic L21 protein HPY07_11675 PF00348 Polyprenyl synthetase HPY07_11680 PF13520 Amino acid permease HPY07_11685 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HPY07_11685 PF00056 lactate/malate dehydrogenase, NAD binding domain HPY07_11690 PF01316 Arginine repressor, DNA binding domain HPY07_11690 PF02863 Arginine repressor, C-terminal domain HPY07_11695 PF16868 NMT1-like family HPY07_11705 PF00582 Universal stress protein family HPY07_11720 PF06877 Regulator of ribonuclease activity B HPY07_11730 PF01523 Putative modulator of DNA gyrase HPY07_11735 PF00795 Carbon-nitrogen hydrolase HPY07_11740 PF13502 AsmA-like C-terminal region HPY07_11740 PF13116 Protein of unknown function HPY07_11745 PF10150 Ribonuclease E/G family HPY07_11745 PF00575 S1 RNA binding domain HPY07_11750 PF02545 Maf-like protein HPY07_11755 PF04093 rod shape-determining protein MreD HPY07_11760 PF04085 rod shape-determining protein MreC HPY07_11795 PF00114 Pilin (bacterial filament) HPY07_11795 PF07963 Prokaryotic N-terminal methylation motif HPY07_11800 PF07963 Prokaryotic N-terminal methylation motif HPY07_11800 PF00114 Pilin (bacterial filament) HPY07_11810 PF00482 Type II secretion system (T2SS), protein F HPY07_11815 PF00437 Type II/IV secretion system protein HPY07_11825 PF13401 AAA domain HPY07_11825 PF01471 Putative peptidoglycan binding domain HPY07_11830 PF00263 Bacterial type II and III secretion system protein HPY07_11830 PF03958 Bacterial type II/III secretion system short domain HPY07_11850 PF00990 Diguanylate cyclase, GGDEF domain HPY07_11850 PF17157 Gammaproteobacterial periplasmic sensor domain HPY07_11850 PF00563 EAL domain HPY07_11855 PF00436 Single-strand binding protein family HPY07_11860 PF00196 Bacterial regulatory proteins, luxR family HPY07_11865 PF00483 Nucleotidyl transferase HPY07_11870 PF17760 UvrA interaction domain HPY07_11870 PF17755 UvrA DNA-binding domain HPY07_11870 PF00005 ABC transporter HPY07_11880 PF02281 Transposase Tn5 dimerisation domain HPY07_11880 PF14706 Transposase DNA-binding HPY07_11880 PF01609 Transposase DDE domain HPY07_11885 PF00266 Aminotransferase class-V HPY07_11890 PF01842 ACT domain HPY07_11890 PF00696 Amino acid kinase family HPY07_11895 PF02607 B12 binding domain HPY07_11895 PF02310 B12 binding domain HPY07_11895 PF02965 Vitamin B12 dependent methionine synthase, activation domain HPY07_11895 PF00809 Pterin binding enzyme HPY07_11895 PF02574 Homocysteine S-methyltransferase HPY07_11900 PF00999 Sodium/hydrogen exchanger family HPY07_11965 PF01507 Phosphoadenosine phosphosulfate reductase family HPY07_11970 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HPY07_11970 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HPY07_11975 PF00175 Oxidoreductase NAD-binding domain HPY07_11975 PF00258 Flavodoxin HPY07_11975 PF00667 FAD binding domain HPY07_11995 PF09583 Phage shock protein G (Phageshock_PspG) HPY07_12000 PF01207 Dihydrouridine synthase (Dus) HPY07_12005 PF01475 Ferric uptake regulator family HPY07_12015 PF12706 Beta-lactamase superfamily domain HPY07_12020 PF00342 Phosphoglucose isomerase HPY07_12025 PF01894 Uncharacterised protein family UPF0047 HPY07_12030 PF00842 Alanine racemase, C-terminal domain HPY07_12030 PF01168 Alanine racemase, N-terminal domain HPY07_12035 PF03796 DnaB-like helicase C terminal domain HPY07_12035 PF00772 DnaB-like helicase N terminal domain HPY07_12045 PF01281 Ribosomal protein L9, N-terminal domain HPY07_12045 PF03948 Ribosomal protein L9, C-terminal domain HPY07_12050 PF01084 Ribosomal protein S18 HPY07_12055 PF00436 Single-strand binding protein family HPY07_12060 PF01250 Ribosomal protein S6 HPY07_12065 PF00210 Ferritin-like domain HPY07_12070 PF04324 BFD-like [2Fe-2S] binding domain HPY07_12075 PF00009 Elongation factor Tu GTP binding domain HPY07_12075 PF03143 Elongation factor Tu C-terminal domain HPY07_12075 PF03144 Elongation factor Tu domain 2 HPY07_12080 PF03764 Elongation factor G, domain IV HPY07_12080 PF14492 Elongation Factor G, domain II HPY07_12080 PF03144 Elongation factor Tu domain 2 HPY07_12080 PF00679 Elongation factor G C-terminus HPY07_12080 PF00009 Elongation factor Tu GTP binding domain HPY07_12085 PF00177 Ribosomal protein S7p/S5e HPY07_12090 PF00164 Ribosomal protein S12/S23 HPY07_12100 PF02635 DsrE/DsrF-like family HPY07_12105 PF02635 DsrE/DsrF-like family HPY07_12110 PF08348 YheO-like PAS domain HPY07_12110 PF13309 HTH domain HPY07_12115 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY07_12115 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY07_12125 PF04102 SlyX HPY07_12130 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HPY07_12135 PF01145 SPFH domain / Band 7 family HPY07_12140 PF01145 SPFH domain / Band 7 family HPY07_12140 PF12221 Bacterial membrane protein N terminal HPY07_12145 PF01926 50S ribosome-binding GTPase HPY07_12145 PF16360 GTP-binding GTPase Middle Region HPY07_12145 PF13167 GTP-binding GTPase N-terminal HPY07_12150 PF17209 Hfq protein HPY07_12160 PF08676 MutL C terminal dimerisation domain HPY07_12160 PF01119 DNA mismatch repair protein, C-terminal domain HPY07_12165 PF01520 N-acetylmuramoyl-L-alanine amidase HPY07_12170 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HPY07_12175 PF08331 Domain of unknown function (DUF1730) HPY07_12225 PF00929 Exonuclease HPY07_12230 PF03193 RsgA GTPase HPY07_12235 PF02666 Phosphatidylserine decarboxylase HPY07_12240 PF00939 Sodium:sulfate symporter transmembrane region HPY07_12250 PF01676 Metalloenzyme superfamily HPY07_12250 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HPY07_12255 PF01551 Peptidase family M23 HPY07_12265 PF08360 QacR-like protein, C-terminal region HPY07_12265 PF00440 Bacterial regulatory proteins, tetR family HPY07_12270 PF01208 Uroporphyrinogen decarboxylase (URO-D) HPY07_12275 PF09297 NADH pyrophosphatase zinc ribbon domain HPY07_12275 PF00293 NUDIX domain HPY07_12280 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HPY07_12285 PF04983 RNA polymerase Rpb1, domain 3 HPY07_12285 PF04998 RNA polymerase Rpb1, domain 5 HPY07_12285 PF00623 RNA polymerase Rpb1, domain 2 HPY07_12285 PF04997 RNA polymerase Rpb1, domain 1 HPY07_12285 PF05000 RNA polymerase Rpb1, domain 4 HPY07_12290 PF10385 RNA polymerase beta subunit external 1 domain HPY07_12290 PF04565 RNA polymerase Rpb2, domain 3 HPY07_12290 PF04561 RNA polymerase Rpb2, domain 2 HPY07_12290 PF04563 RNA polymerase beta subunit HPY07_12290 PF00562 RNA polymerase Rpb2, domain 6 HPY07_12290 PF04560 RNA polymerase Rpb2, domain 7 HPY07_12295 PF00542 Ribosomal protein L7/L12 C-terminal domain HPY07_12295 PF16320 Ribosomal protein L7/L12 dimerisation domain HPY07_12300 PF00466 Ribosomal protein L10 HPY07_12305 PF00687 Ribosomal protein L1p/L10e family HPY07_12310 PF00298 Ribosomal protein L11, RNA binding domain HPY07_12310 PF03946 Ribosomal protein L11, N-terminal domain HPY07_12315 PF02357 Transcription termination factor nusG HPY07_12315 PF00467 KOW motif HPY07_12320 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HPY07_12325 PF03143 Elongation factor Tu C-terminal domain HPY07_12325 PF00009 Elongation factor Tu GTP binding domain HPY07_12325 PF03144 Elongation factor Tu domain 2 HPY07_12350 PF00485 Phosphoribulokinase / Uridine kinase family HPY07_12355 PF03099 Biotin/lipoate A/B protein ligase family HPY07_12355 PF08279 HTH domain HPY07_12355 PF02237 Biotin protein ligase C terminal domain HPY07_12360 PF01565 FAD binding domain HPY07_12360 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HPY07_12370 PF13091 PLD-like domain HPY07_12405 PF00175 Oxidoreductase NAD-binding domain HPY07_12410 PF00970 Oxidoreductase FAD-binding domain HPY07_12410 PF00175 Oxidoreductase NAD-binding domain HPY07_12410 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY07_12415 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HPY07_12425 PF07498 Rho termination factor, N-terminal domain HPY07_12425 PF07497 Rho termination factor, RNA-binding domain HPY07_12425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY07_12430 PF00085 Thioredoxin HPY07_12435 PF00270 DEAD/DEAH box helicase HPY07_12435 PF00271 Helicase conserved C-terminal domain HPY07_12440 PF02541 Ppx/GppA phosphatase family HPY07_12445 PF09456 RcsC Alpha-Beta-Loop (ABL) HPY07_12445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_12445 PF00512 His Kinase A (phospho-acceptor) domain HPY07_12445 PF00072 Response regulator receiver domain HPY07_12450 PF12832 MFS_1 like family HPY07_12465 PF13193 AMP-binding enzyme C-terminal domain HPY07_12465 PF00501 AMP-binding enzyme HPY07_12465 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY07_12470 PF01220 Dehydroquinase class II HPY07_12475 PF00364 Biotin-requiring enzyme HPY07_12480 PF02785 Biotin carboxylase C-terminal domain HPY07_12480 PF00289 Biotin carboxylase, N-terminal domain HPY07_12480 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HPY07_12490 PF01207 Dihydrouridine synthase (Dus) HPY07_12495 PF02954 Bacterial regulatory protein, Fis family HPY07_12500 PF00356 Bacterial regulatory proteins, lacI family HPY07_12500 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY07_12505 PF11647 Membrane Localization Domain HPY07_12510 PF01699 Sodium/calcium exchanger protein HPY07_12515 PF00920 Dehydratase family HPY07_12520 PF01202 Shikimate kinase HPY07_12525 PF02447 GntP family permease HPY07_12530 PF01081 KDPG and KHG aldolase HPY07_12535 PF07715 TonB-dependent Receptor Plug Domain HPY07_12535 PF00593 TonB dependent receptor HPY07_12550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_12550 PF17200 Single Cache domain 2 HPY07_12550 PF00672 HAMP domain HPY07_12555 PF01276 Orn/Lys/Arg decarboxylase, major domain HPY07_12555 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HPY07_12555 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HPY07_12560 PF13520 Amino acid permease HPY07_12565 PF00990 Diguanylate cyclase, GGDEF domain HPY07_12570 PF00486 Transcriptional regulatory protein, C terminal HPY07_12570 PF18500 CadC C-terminal domain 1 HPY07_12575 PF13411 MerR HTH family regulatory protein HPY07_12585 PF01808 AICARFT/IMPCHase bienzyme HPY07_12585 PF02142 MGS-like domain HPY07_12590 PF02844 Phosphoribosylglycinamide synthetase, N domain HPY07_12590 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HPY07_12590 PF02843 Phosphoribosylglycinamide synthetase, C domain HPY07_12600 PF00216 Bacterial DNA-binding protein HPY07_12605 PF00571 CBS domain HPY07_12605 PF01595 Cyclin M transmembrane N-terminal domain HPY07_12610 PF04222 Protein of unknown function (DUF416) HPY07_12615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY07_12620 PF03167 Uracil DNA glycosylase superfamily HPY07_12625 PF00924 Mechanosensitive ion channel HPY07_12630 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HPY07_12630 PF00753 Metallo-beta-lactamase superfamily HPY07_12630 PF10996 Beta-Casp domain HPY07_12640 PF02397 Bacterial sugar transferase HPY07_12645 PF00535 Glycosyl transferase family 2 HPY07_12665 PF14602 Hexapeptide repeat of succinyl-transferase HPY07_12665 PF12464 Maltose acetyltransferase HPY07_12665 PF00132 Bacterial transferase hexapeptide (six repeats) HPY07_12675 PF02348 Cytidylyltransferase HPY07_12685 PF00571 CBS domain HPY07_12685 PF01380 SIS domain HPY07_12695 PF03102 NeuB family HPY07_12695 PF08666 SAF domain HPY07_12700 PF02350 UDP-N-acetylglucosamine 2-epimerase HPY07_12705 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HPY07_12710 PF02719 Polysaccharide biosynthesis protein HPY07_12715 PF02706 Chain length determinant protein HPY07_12715 PF13807 G-rich domain on putative tyrosine kinase HPY07_12715 PF13614 AAA domain HPY07_12720 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY07_12725 PF10531 SLBB domain HPY07_12725 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HPY07_12725 PF02563 Polysaccharide biosynthesis/export protein HPY07_12735 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF HPY07_12745 PF06082 Exopolysaccharide biosynthesis protein YbjH HPY07_12750 PF02281 Transposase Tn5 dimerisation domain HPY07_12750 PF01609 Transposase DDE domain HPY07_12750 PF14706 Transposase DNA-binding HPY07_12760 PF02397 Bacterial sugar transferase HPY07_12765 PF01370 NAD dependent epimerase/dehydratase family HPY07_12770 PF02719 Polysaccharide biosynthesis protein HPY07_12790 PF05523 WxcM-like, C-terminal HPY07_12795 PF00535 Glycosyl transferase family 2 HPY07_12800 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HPY07_12810 PF13649 Methyltransferase domain HPY07_12815 PF00005 ABC transporter HPY07_12825 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HPY07_12830 PF04321 RmlD substrate binding domain HPY07_12835 PF00483 Nucleotidyl transferase HPY07_12840 PF16363 GDP-mannose 4,6 dehydratase HPY07_12845 PF01370 NAD dependent epimerase/dehydratase family HPY07_12855 PF00535 Glycosyl transferase family 2 HPY07_12860 PF01522 Polysaccharide deacetylase HPY07_12860 PF00457 Glycosyl hydrolases family 11 HPY07_12865 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY07_12870 PF04488 Glycosyltransferase sugar-binding region containing DXD motif HPY07_12875 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HPY07_12880 PF00583 Acetyltransferase (GNAT) family HPY07_12885 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HPY07_12905 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY07_12910 PF00535 Glycosyl transferase family 2 HPY07_12915 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY07_12920 PF01467 Cytidylyltransferase-like HPY07_12925 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HPY07_12925 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HPY07_12925 PF06827 Zinc finger found in FPG and IleRS HPY07_12935 PF00471 Ribosomal protein L33 HPY07_12940 PF00830 Ribosomal L28 family HPY07_12945 PF04002 RadC-like JAB domain HPY07_12950 PF00672 HAMP domain HPY07_12950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_12950 PF17200 Single Cache domain 2 HPY07_12955 PF04127 DNA / pantothenate metabolism flavoprotein HPY07_12955 PF02441 Flavoprotein HPY07_12965 PF00440 Bacterial regulatory proteins, tetR family HPY07_12970 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY07_12975 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY07_12980 PF00156 Phosphoribosyl transferase domain HPY07_12985 PF03725 3' exoribonuclease family, domain 2 HPY07_12985 PF01138 3' exoribonuclease family, domain 1 HPY07_12990 PF08340 Domain of unknown function (DUF1732) HPY07_12990 PF03755 YicC-like family, N-terminal region HPY07_12995 PF03350 Uncharacterized protein family, UPF0114 HPY07_13000 PF00267 Gram-negative porin HPY07_13005 PF00367 phosphotransferase system, EIIB HPY07_13005 PF02378 Phosphotransferase system, EIIC HPY07_13010 PF13580 SIS domain HPY07_13015 PF01418 Helix-turn-helix domain, rpiR family HPY07_13015 PF01380 SIS domain HPY07_13025 PF16124 RecQ zinc-binding HPY07_13025 PF09382 RQC domain HPY07_13025 PF00570 HRDC domain HPY07_13025 PF00271 Helicase conserved C-terminal domain HPY07_13025 PF00270 DEAD/DEAH box helicase HPY07_13030 PF00892 EamA-like transporter family HPY07_13040 PF12833 Helix-turn-helix domain HPY07_13045 PF01810 LysE type translocator HPY07_13050 PF00580 UvrD/REP helicase N-terminal domain HPY07_13050 PF13361 UvrD-like helicase C-terminal domain HPY07_13055 PF01432 Peptidase family M3 HPY07_13060 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HPY07_13065 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY07_13065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY07_13075 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY07_13075 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_13085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY07_13090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY07_13090 PF00005 ABC transporter HPY07_13125 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY07_13130 PF00580 UvrD/REP helicase N-terminal domain HPY07_13130 PF13361 UvrD-like helicase C-terminal domain HPY07_13135 PF00440 Bacterial regulatory proteins, tetR family HPY07_13140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY07_13145 PF00873 AcrB/AcrD/AcrF family HPY07_13150 PF04380 Membrane fusogenic activity HPY07_13155 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HPY07_13155 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HPY07_13160 PF03466 LysR substrate binding domain HPY07_13160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_13230 PF02386 Cation transport protein HPY07_13235 PF01205 Uncharacterized protein family UPF0029 HPY07_13235 PF09186 Domain of unknown function (DUF1949) HPY07_13240 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY07_13240 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY07_13240 PF00378 Enoyl-CoA hydratase/isomerase HPY07_13245 PF00108 Thiolase, N-terminal domain HPY07_13245 PF02803 Thiolase, C-terminal domain HPY07_13250 PF03466 LysR substrate binding domain HPY07_13250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_13255 PF07690 Major Facilitator Superfamily HPY07_13260 PF12804 MobA-like NTP transferase domain HPY07_13260 PF00132 Bacterial transferase hexapeptide (six repeats) HPY07_13265 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HPY07_13265 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HPY07_13270 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY07_13270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY07_13275 PF00231 ATP synthase HPY07_13280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY07_13280 PF00306 ATP synthase alpha/beta chain, C terminal domain HPY07_13280 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY07_13285 PF00213 ATP synthase delta (OSCP) subunit HPY07_13290 PF00430 ATP synthase B/B' CF(0) HPY07_13295 PF00137 ATP synthase subunit C HPY07_13300 PF00119 ATP synthase A chain HPY07_13305 PF03899 ATP synthase I chain HPY07_13310 PF02195 ParB-like nuclease domain HPY07_13310 PF17762 HTH domain found in ParB protein HPY07_13315 PF13614 AAA domain HPY07_13320 PF02527 rRNA small subunit methyltransferase G HPY07_13325 PF01134 Glucose inhibited division protein A HPY07_13325 PF13932 GidA associated domain HPY07_13330 PF00258 Flavodoxin HPY07_13335 PF01926 50S ribosome-binding GTPase HPY07_13335 PF12631 MnmE helical domain HPY07_13335 PF10396 GTP-binding protein TrmE N-terminus HPY07_13345 PF01809 Putative membrane protein insertion efficiency factor HPY07_13350 PF00825 Ribonuclease P HPY07_13355 PF00468 Ribosomal protein L34 HPY07_13360 PF00005 ABC transporter HPY07_13365 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_13370 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY07_13375 PF02195 ParB-like nuclease domain HPY07_13375 PF08775 ParB family HPY07_13380 PF18607 ParA helix turn helix domain HPY07_13380 PF13614 AAA domain HPY07_13405 PF01709 Transcriptional regulator HPY07_13410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY07_13410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HPY07_13415 PF00672 HAMP domain HPY07_13415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_13415 PF17200 Single Cache domain 2 HPY07_13420 PF10928 Protein of unknown function (DUF2810) HPY07_13425 PF17874 MalT-like TPR region HPY07_13425 PF00196 Bacterial regulatory proteins, luxR family HPY07_13430 PF00343 Carbohydrate phosphorylase HPY07_13435 PF02446 4-alpha-glucanotransferase HPY07_13440 PF02806 Alpha amylase, C-terminal all-beta domain HPY07_13440 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY07_13440 PF00128 Alpha amylase, catalytic domain HPY07_13445 PF05638 Type VI secretion system effector, Hcp HPY07_13450 PF16671 Actin cross-linking domain HPY07_13450 PF04717 Type VI secretion system, phage-baseplate injector HPY07_13485 PF00939 Sodium:sulfate symporter transmembrane region HPY07_13490 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY07_13495 PF00704 Glycosyl hydrolases family 18 HPY07_13495 PF08329 Chitinase A, N-terminal domain HPY07_13520 PF01569 PAP2 superfamily HPY07_13525 PF04389 Peptidase family M28 HPY07_13525 PF02225 PA domain HPY07_13530 PF00375 Sodium:dicarboxylate symporter family HPY07_13540 PF02630 SCO1/SenC HPY07_13555 PF03616 Sodium/glutamate symporter HPY07_13560 PF07238 PilZ domain HPY07_13560 PF12945 Flagellar protein YcgR HPY07_13575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY07_13575 PF00529 HlyD membrane-fusion protein of T1SS HPY07_13580 PF11742 Protein of unknown function (DUF3302) HPY07_13585 PF00990 Diguanylate cyclase, GGDEF domain HPY07_13600 PF01048 Phosphorylase superfamily HPY07_13605 PF08349 Protein of unknown function (DUF1722) HPY07_13610 PF13411 MerR HTH family regulatory protein HPY07_13615 PF03441 FAD binding domain of DNA photolyase HPY07_13615 PF00875 DNA photolyase HPY07_13620 PF03734 L,D-transpeptidase catalytic domain HPY07_13620 PF01476 LysM domain HPY07_13620 PF17969 L,D-transpeptidase C-terminal domain HPY07_13630 PF00271 Helicase conserved C-terminal domain HPY07_13630 PF00270 DEAD/DEAH box helicase HPY07_13635 PF00326 Prolyl oligopeptidase family HPY07_13635 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HPY07_13640 PF00593 TonB dependent receptor HPY07_13640 PF07715 TonB-dependent Receptor Plug Domain HPY07_13660 PF12729 Four helix bundle sensory module for signal transduction HPY07_13660 PF00672 HAMP domain HPY07_13660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_13665 PF12849 PBP superfamily domain HPY07_13670 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_13675 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_13680 PF00005 ABC transporter HPY07_13685 PF00072 Response regulator receiver domain HPY07_13685 PF00990 Diguanylate cyclase, GGDEF domain HPY07_13705 PF00916 Sulfate permease family HPY07_13705 PF01740 STAS domain HPY07_13715 PF01476 LysM domain HPY07_13715 PF01551 Peptidase family M23 HPY07_13715 PF08525 Opacity-associated protein A N-terminal motif HPY07_13720 PF13188 PAS domain HPY07_13720 PF03707 Bacterial signalling protein N terminal repeat HPY07_13720 PF00563 EAL domain HPY07_13720 PF00990 Diguanylate cyclase, GGDEF domain HPY07_13725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_13725 PF03466 LysR substrate binding domain HPY07_13730 PF07690 Major Facilitator Superfamily HPY07_13735 PF00376 MerR family regulatory protein HPY07_13735 PF09278 MerR, DNA binding HPY07_13750 PF00375 Sodium:dicarboxylate symporter family HPY07_13765 PF02001 Protein of unknown function DUF134 HPY07_13790 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY07_13790 PF01447 Thermolysin metallopeptidase, catalytic domain HPY07_13790 PF01483 Proprotein convertase P-domain HPY07_13790 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY07_13800 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HPY07_13800 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HPY07_13810 PF00581 Rhodanese-like domain HPY07_13815 PF00563 EAL domain HPY07_13815 PF00196 Bacterial regulatory proteins, luxR family HPY07_13820 PF13419 Haloacid dehalogenase-like hydrolase HPY07_13825 PF01740 STAS domain HPY07_13825 PF00916 Sulfate permease family HPY07_13830 PF00849 RNA pseudouridylate synthase HPY07_13890 PF10431 C-terminal, D2-small domain, of ClpB protein HPY07_13890 PF17871 AAA lid domain HPY07_13890 PF07724 AAA domain (Cdc48 subfamily) HPY07_13890 PF00004 ATPase family associated with various cellular activities (AAA) HPY07_13935 PF05025 RbsD / FucU transport protein family HPY07_13940 PF00005 ABC transporter HPY07_13945 PF02653 Branched-chain amino acid transport system / permease component HPY07_13950 PF13407 Periplasmic binding protein domain HPY07_13955 PF00294 pfkB family carbohydrate kinase HPY07_13960 PF00356 Bacterial regulatory proteins, lacI family HPY07_13965 PF04973 Nicotinamide mononucleotide transporter HPY07_13970 PF01048 Phosphorylase superfamily HPY07_13980 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY07_13985 PF07690 Major Facilitator Superfamily HPY07_14000 PF00512 His Kinase A (phospho-acceptor) domain HPY07_14000 PF02743 Cache domain HPY07_14000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_14005 PF02954 Bacterial regulatory protein, Fis family HPY07_14005 PF00158 Sigma-54 interaction domain HPY07_14005 PF00072 Response regulator receiver domain HPY07_14020 PF01266 FAD dependent oxidoreductase HPY07_14025 PF00041 Fibronectin type III domain HPY07_14025 PF12561 ToxR activated gene A lipoprotein domain HPY07_14030 PF01327 Polypeptide deformylase HPY07_14035 PF00175 Oxidoreductase NAD-binding domain HPY07_14035 PF00970 Oxidoreductase FAD-binding domain HPY07_14035 PF00042 Globin HPY07_14040 PF03334 Na+/H+ antiporter subunit HPY07_14045 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) HPY07_14065 PF13244 Domain of unknown function (DUF4040) HPY07_14065 PF00361 Proton-conducting membrane transporter HPY07_14065 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY07_14065 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter HPY07_14075 PF00582 Universal stress protein family HPY07_14080 PF03222 Tryptophan/tyrosine permease family HPY07_14085 PF01212 Beta-eliminating lyase HPY07_14095 PF12843 Putative quorum-sensing-regulated virulence factor HPY07_14105 PF00990 Diguanylate cyclase, GGDEF domain HPY07_14105 PF08448 PAS fold HPY07_14105 PF00563 EAL domain HPY07_14110 PF00313 'Cold-shock' DNA-binding domain HPY07_14125 PF07584 Aerotolerance regulator N-terminal HPY07_14125 PF13519 von Willebrand factor type A domain HPY07_14140 PF01882 Protein of unknown function DUF58 HPY07_14145 PF07726 ATPase family associated with various cellular activities (AAA) HPY07_14145 PF17863 AAA lid domain HPY07_14150 PF02743 Cache domain HPY07_14150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_14150 PF00672 HAMP domain HPY07_14165 PF01773 Na+ dependent nucleoside transporter N-terminus HPY07_14165 PF07662 Na+ dependent nucleoside transporter C-terminus HPY07_14165 PF07670 Nucleoside recognition HPY07_14170 PF07687 Peptidase dimerisation domain HPY07_14170 PF01546 Peptidase family M20/M25/M40 HPY07_14180 PF00158 Sigma-54 interaction domain HPY07_14180 PF01590 GAF domain HPY07_14185 PF00970 Oxidoreductase FAD-binding domain HPY07_14185 PF00175 Oxidoreductase NAD-binding domain HPY07_14185 PF00042 Globin HPY07_14190 PF00313 'Cold-shock' DNA-binding domain HPY07_14195 PF03889 Alternative ribosome-rescue factor A HPY07_14210 PF00072 Response regulator receiver domain HPY07_14220 PF03853 YjeF-related protein N-terminus HPY07_14220 PF01256 Carbohydrate kinase HPY07_14225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY07_14225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY07_14235 PF07885 Ion channel HPY07_14245 PF00478 IMP dehydrogenase / GMP reductase domain HPY07_14250 PF05970 PIF1-like helicase HPY07_14250 PF02689 Helicase HPY07_14255 PF00271 Helicase conserved C-terminal domain HPY07_14255 PF00270 DEAD/DEAH box helicase HPY07_14260 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY07_14265 PF02540 NAD synthase HPY07_14270 PF01467 Cytidylyltransferase-like HPY07_14275 PF11849 Domain of unknown function (DUF3369) HPY07_14285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_14285 PF00512 His Kinase A (phospho-acceptor) domain HPY07_14285 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY07_14295 PF03553 Na+/H+ antiporter family HPY07_14300 PF07690 Major Facilitator Superfamily HPY07_14310 PF00657 GDSL-like Lipase/Acylhydrolase HPY07_14315 PF16458 Beta-prism lectin HPY07_14315 PF12563 Hemolytic toxin N terminal HPY07_14315 PF07968 Leukocidin/Hemolysin toxin family HPY07_14320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_14320 PF12729 Four helix bundle sensory module for signal transduction HPY07_14320 PF00672 HAMP domain HPY07_14325 PF00561 alpha/beta hydrolase fold HPY07_14330 PF03280 Proteobacterial lipase chaperone protein HPY07_14335 PF00801 PKD domain HPY07_14335 PF05547 Immune inhibitor A peptidase M6 HPY07_14360 PF01032 FecCD transport family HPY07_14365 PF01032 FecCD transport family HPY07_14370 PF00005 ABC transporter HPY07_14375 PF12833 Helix-turn-helix domain HPY07_14380 PF07715 TonB-dependent Receptor Plug Domain HPY07_14380 PF00593 TonB dependent receptor HPY07_14390 PF00871 Acetokinase family HPY07_14395 PF01022 Bacterial regulatory protein, arsR family HPY07_14400 PF01758 Sodium Bile acid symporter family HPY07_14405 PF14706 Transposase DNA-binding HPY07_14405 PF02281 Transposase Tn5 dimerisation domain HPY07_14405 PF01609 Transposase DDE domain HPY07_14415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_14415 PF03466 LysR substrate binding domain HPY07_14425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_14425 PF00512 His Kinase A (phospho-acceptor) domain HPY07_14425 PF00672 HAMP domain HPY07_14430 PF00486 Transcriptional regulatory protein, C terminal HPY07_14430 PF00072 Response regulator receiver domain HPY07_14440 PF01261 Xylose isomerase-like TIM barrel HPY07_14445 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY07_14455 PF00596 Class II Aldolase and Adducin N-terminal domain HPY07_14460 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY07_14465 PF03611 PTS system sugar-specific permease component HPY07_14470 PF00455 DeoR C terminal sensor domain HPY07_14470 PF08220 DeoR-like helix-turn-helix domain HPY07_14485 PF06736 Protein of unknown function (DUF1211) HPY07_14495 PF00857 Isochorismatase family HPY07_14500 PF02678 Pirin HPY07_14500 PF17954 Quercetinase C-terminal cupin domain HPY07_14505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_14505 PF03466 LysR substrate binding domain HPY07_14510 PF00128 Alpha amylase, catalytic domain HPY07_14515 PF00132 Bacterial transferase hexapeptide (six repeats) HPY07_14530 PF00072 Response regulator receiver domain HPY07_14530 PF00486 Transcriptional regulatory protein, C terminal HPY07_14535 PF00512 His Kinase A (phospho-acceptor) domain HPY07_14535 PF13426 PAS domain HPY07_14535 PF00672 HAMP domain HPY07_14535 PF14827 Double sensory domain of two-component sensor kinase HPY07_14535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_14560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_14560 PF03466 LysR substrate binding domain HPY07_14565 PF00672 HAMP domain HPY07_14565 PF02743 Cache domain HPY07_14565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_14570 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY07_14575 PF00768 D-alanyl-D-alanine carboxypeptidase HPY07_14575 PF07943 Penicillin-binding protein 5, C-terminal domain HPY07_14590 PF00194 Eukaryotic-type carbonic anhydrase HPY07_14595 PF02347 Glycine cleavage system P-protein HPY07_14600 PF01597 Glycine cleavage H-protein HPY07_14605 PF00464 Serine hydroxymethyltransferase HPY07_14615 PF01571 Aminomethyltransferase folate-binding domain HPY07_14615 PF08669 Glycine cleavage T-protein C-terminal barrel domain HPY07_14620 PF03129 Anticodon binding domain HPY07_14620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY07_14620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY07_14620 PF02824 TGS domain HPY07_14625 PF00707 Translation initiation factor IF-3, C-terminal domain HPY07_14625 PF05198 Translation initiation factor IF-3, N-terminal domain HPY07_14630 PF01632 Ribosomal protein L35 HPY07_14635 PF00453 Ribosomal protein L20 HPY07_14640 PF00589 Phage integrase family HPY07_14640 PF13495 Phage integrase, N-terminal SAM-like domain HPY07_14665 PF13302 Acetyltransferase (GNAT) domain HPY07_14715 PF07859 alpha/beta hydrolase fold HPY07_14785 PF04229 GrpB protein HPY07_14870 PF02567 Phenazine biosynthesis-like protein HPY07_14885 PF04229 GrpB protein HPY07_14895 PF02810 SEC-C motif HPY07_14895 PF07517 SecA DEAD-like domain HPY07_14895 PF01043 SecA preprotein cross-linking domain HPY07_14895 PF07516 SecA Wing and Scaffold domain HPY07_15010 PF13302 Acetyltransferase (GNAT) domain HPY07_15080 PF00583 Acetyltransferase (GNAT) family HPY07_15390 PF04229 GrpB protein HPY07_15400 PF14602 Hexapeptide repeat of succinyl-transferase HPY07_15400 PF00132 Bacterial transferase hexapeptide (six repeats) HPY07_15400 PF12804 MobA-like NTP transferase domain HPY07_15405 PF01817 Chorismate mutase type II HPY07_15475 PF00665 Integrase core domain HPY07_15475 PF13333 Integrase core domain HPY07_15475 PF13276 HTH-like domain HPY07_15515 PF13276 HTH-like domain HPY07_15515 PF13333 Integrase core domain HPY07_15515 PF00665 Integrase core domain HPY07_15555 PF00583 Acetyltransferase (GNAT) family HPY07_15600 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HPY07_15620 PF13302 Acetyltransferase (GNAT) domain HPY07_15645 PF01370 NAD dependent epimerase/dehydratase family HPY07_15705 PF08378 Nuclease-related domain HPY07_15735 PF02567 Phenazine biosynthesis-like protein HPY07_15770 PF13302 Acetyltransferase (GNAT) domain HPY07_15830 PF01966 HD domain HPY07_15905 PF13276 HTH-like domain HPY07_15905 PF00665 Integrase core domain HPY07_15905 PF13333 Integrase core domain HPY07_15990 PF02567 Phenazine biosynthesis-like protein HPY07_16000 PF02048 Heat-stable enterotoxin ST HPY07_16055 PF01609 Transposase DDE domain HPY07_16055 PF02281 Transposase Tn5 dimerisation domain HPY07_16055 PF14706 Transposase DNA-binding HPY07_16060 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY07_16060 PF07685 CobB/CobQ-like glutamine amidotransferase domain HPY07_16070 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_16075 PF03459 TOBE domain HPY07_16075 PF00005 ABC transporter HPY07_16100 PF00072 Response regulator receiver domain HPY07_16100 PF13188 PAS domain HPY07_16100 PF08448 PAS fold HPY07_16100 PF00512 His Kinase A (phospho-acceptor) domain HPY07_16100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_16105 PF12805 FUSC-like inner membrane protein yccS HPY07_16110 PF12462 DNA helicase IV / RNA helicase N terminal HPY07_16110 PF00580 UvrD/REP helicase N-terminal domain HPY07_16110 PF13361 UvrD-like helicase C-terminal domain HPY07_16115 PF01219 Prokaryotic diacylglycerol kinase HPY07_16120 PF00857 Isochorismatase family HPY07_16125 PF02142 MGS-like domain HPY07_16130 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY07_16135 PF00672 HAMP domain HPY07_16135 PF00512 His Kinase A (phospho-acceptor) domain HPY07_16135 PF01627 Hpt domain HPY07_16135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_16135 PF00072 Response regulator receiver domain HPY07_16140 PF00224 Pyruvate kinase, barrel domain HPY07_16140 PF02887 Pyruvate kinase, alpha/beta domain HPY07_16145 PF07690 Major Facilitator Superfamily HPY07_16155 PF02743 Cache domain HPY07_16155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_16155 PF00512 His Kinase A (phospho-acceptor) domain HPY07_16160 PF00072 Response regulator receiver domain HPY07_16160 PF02954 Bacterial regulatory protein, Fis family HPY07_16160 PF14532 Sigma-54 interaction domain HPY07_16170 PF00465 Iron-containing alcohol dehydrogenase HPY07_16175 PF06483 Chitinase C HPY07_16175 PF00704 Glycosyl hydrolases family 18 HPY07_16180 PF00483 Nucleotidyl transferase HPY07_16185 PF17158 Membrane-associated sensor, integral membrane domain HPY07_16185 PF00990 Diguanylate cyclase, GGDEF domain HPY07_16200 PF07549 SecD/SecF GG Motif HPY07_16200 PF02355 Protein export membrane protein HPY07_16200 PF13721 SecD export protein N-terminal TM region HPY07_16205 PF07549 SecD/SecF GG Motif HPY07_16205 PF02355 Protein export membrane protein HPY07_16210 PF00106 short chain dehydrogenase HPY07_16215 PF00108 Thiolase, N-terminal domain HPY07_16215 PF02803 Thiolase, C-terminal domain HPY07_16225 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HPY07_16230 PF08402 TOBE domain HPY07_16230 PF00005 ABC transporter HPY07_16235 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_16245 PF07690 Major Facilitator Superfamily HPY07_16250 PF07730 Histidine kinase HPY07_16250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_16250 PF05231 MASE1 HPY07_16255 PF00072 Response regulator receiver domain HPY07_16255 PF00196 Bacterial regulatory proteins, luxR family HPY07_16260 PF01966 HD domain HPY07_16270 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY07_16275 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HPY07_16280 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY07_16280 PF01568 Molydopterin dinucleotide binding domain HPY07_16280 PF00384 Molybdopterin oxidoreductase HPY07_16290 PF12838 4Fe-4S dicluster domain HPY07_16290 PF13187 4Fe-4S dicluster domain HPY07_16295 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HPY07_16295 PF07730 Histidine kinase HPY07_16295 PF00672 HAMP domain HPY07_16295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_16300 PF00196 Bacterial regulatory proteins, luxR family HPY07_16300 PF00072 Response regulator receiver domain HPY07_16305 PF03315 Serine dehydratase beta chain HPY07_16305 PF03313 Serine dehydratase alpha chain HPY07_16310 PF03606 C4-dicarboxylate anaerobic carrier HPY07_16315 PF00672 HAMP domain HPY07_16315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_16315 PF12729 Four helix bundle sensory module for signal transduction HPY07_16320 PF13419 Haloacid dehalogenase-like hydrolase HPY07_16330 PF03477 ATP cone domain HPY07_16330 PF13597 Anaerobic ribonucleoside-triphosphate reductase HPY07_16340 PF00155 Aminotransferase class I and II HPY07_16345 PF08443 RimK-like ATP-grasp domain HPY07_16345 PF18030 RimK PreATP-grasp domain HPY07_16350 PF02378 Phosphotransferase system, EIIC HPY07_16350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY07_16355 PF00294 pfkB family carbohydrate kinase HPY07_16360 PF00381 PTS HPr component phosphorylation site HPY07_16360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY07_16365 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY07_16365 PF00356 Bacterial regulatory proteins, lacI family HPY07_16370 PF00149 Calcineurin-like phosphoesterase HPY07_16370 PF12320 Type 5 capsule protein repressor C-terminal domain HPY07_16375 PF13476 AAA domain HPY07_16380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_16380 PF00072 Response regulator receiver domain HPY07_16385 PF00155 Aminotransferase class I and II HPY07_16395 PF00654 Voltage gated chloride channel HPY07_16400 PF07683 Cobalamin synthesis protein cobW C-terminal domain HPY07_16400 PF02492 CobW/HypB/UreG, nucleotide-binding domain HPY07_16405 PF01926 50S ribosome-binding GTPase HPY07_16410 PF02705 K+ potassium transporter HPY07_16415 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HPY07_16415 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HPY07_16415 PF10371 Domain of unknown function HPY07_16415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY07_16415 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HPY07_16420 PF13493 Domain of unknown function (DUF4118) HPY07_16420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_16420 PF00512 His Kinase A (phospho-acceptor) domain HPY07_16420 PF02702 Osmosensitive K+ channel His kinase sensor domain HPY07_16425 PF00486 Transcriptional regulatory protein, C terminal HPY07_16425 PF00072 Response regulator receiver domain HPY07_16430 PF02416 mttA/Hcf106 family HPY07_16445 PF00563 EAL domain HPY07_16445 PF10388 EAL-domain associated signalling protein domain HPY07_16455 PF01292 Prokaryotic cytochrome b561 HPY07_16460 PF04264 YceI-like domain HPY07_16465 PF01226 Formate/nitrite transporter HPY07_16470 PF03466 LysR substrate binding domain HPY07_16470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_16475 PF06496 Protein of unknown function (DUF1097) HPY07_16480 PF11398 Protein of unknown function (DUF2813) HPY07_16485 PF02872 5'-nucleotidase, C-terminal domain HPY07_16485 PF00149 Calcineurin-like phosphoesterase HPY07_16490 PF03741 Integral membrane protein TerC family HPY07_16500 PF08274 PhnA Zinc-Ribbon HPY07_16500 PF03831 PhnA domain HPY07_16530 PF17151 Periplasmic sensor domain HPY07_16530 PF00990 Diguanylate cyclase, GGDEF domain HPY07_16550 PF00990 Diguanylate cyclase, GGDEF domain HPY07_16550 PF17158 Membrane-associated sensor, integral membrane domain HPY07_16565 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HPY07_16565 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY07_16565 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY07_16570 PF02233 NAD(P) transhydrogenase beta subunit HPY07_16575 PF01797 Transposase IS200 like HPY07_16580 PF07715 TonB-dependent Receptor Plug Domain HPY07_16580 PF04886 PT repeat HPY07_16580 PF00593 TonB dependent receptor HPY07_16585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_16585 PF03466 LysR substrate binding domain HPY07_16590 PF00583 Acetyltransferase (GNAT) family HPY07_16590 PF13607 Succinyl-CoA ligase like flavodoxin domain HPY07_16590 PF13380 CoA binding domain HPY07_16610 PF01253 Translation initiation factor SUI1 HPY07_16615 PF03701 Uncharacterised protein family (UPF0181) HPY07_16630 PF00486 Transcriptional regulatory protein, C terminal HPY07_16630 PF00072 Response regulator receiver domain HPY07_16640 PF01797 Transposase IS200 like HPY07_16645 PF12793 Sugar transport-related sRNA regulator N-term HPY07_16645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY07_16655 PF03061 Thioesterase superfamily HPY07_16675 PF02798 Glutathione S-transferase, N-terminal domain HPY07_16675 PF00043 Glutathione S-transferase, C-terminal domain HPY07_16690 PF00132 Bacterial transferase hexapeptide (six repeats) HPY07_16690 PF12804 MobA-like NTP transferase domain HPY07_16690 PF03479 Plants and Prokaryotes Conserved (PCC) domain HPY07_16695 PF00005 ABC transporter HPY07_16695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY07_16700 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY07_16700 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_16705 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_16710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY07_16745 PF00392 Bacterial regulatory proteins, gntR family HPY07_16745 PF07702 UTRA domain HPY07_16750 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_16755 PF00005 ABC transporter HPY07_16775 PF13419 Haloacid dehalogenase-like hydrolase HPY07_16780 PF14760 Rnk N-terminus HPY07_16780 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY07_16785 PF13419 Haloacid dehalogenase-like hydrolase HPY07_16790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_16790 PF03466 LysR substrate binding domain HPY07_16805 PF01741 Large-conductance mechanosensitive channel, MscL HPY07_16810 PF01268 Formate--tetrahydrofolate ligase HPY07_16815 PF01625 Peptide methionine sulfoxide reductase HPY07_16815 PF01641 SelR domain HPY07_16820 PF01227 GTP cyclohydrolase I HPY07_16825 PF03454 MoeA C-terminal region (domain IV) HPY07_16825 PF03453 MoeA N-terminal region (domain I and II) HPY07_16825 PF00994 Probable molybdopterin binding domain HPY07_16830 PF00899 ThiF family HPY07_16840 PF00581 Rhodanese-like domain HPY07_16845 PF04198 Putative sugar-binding domain HPY07_16850 PF00923 Transaldolase/Fructose-6-phosphate aldolase HPY07_16855 PF02779 Transketolase, pyrimidine binding domain HPY07_16855 PF02780 Transketolase, C-terminal domain HPY07_16855 PF00456 Transketolase, thiamine diphosphate binding domain HPY07_16880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY07_16880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY07_16895 PF06942 GlpM protein HPY07_16905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_16905 PF03466 LysR substrate binding domain HPY07_16910 PF03992 Antibiotic biosynthesis monooxygenase HPY07_16915 PF00881 Nitroreductase family HPY07_16920 PF00873 AcrB/AcrD/AcrF family HPY07_16935 PF04143 Sulphur transport HPY07_16950 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY07_16950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY07_16995 PF02378 Phosphotransferase system, EIIC HPY07_16995 PF00367 phosphotransferase system, EIIB HPY07_17005 PF08244 Glycosyl hydrolases family 32 C terminal HPY07_17005 PF00251 Glycosyl hydrolases family 32 N-terminal domain HPY07_17010 PF00294 pfkB family carbohydrate kinase HPY07_17015 PF01266 FAD dependent oxidoreductase HPY07_17015 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HPY07_17020 PF00672 HAMP domain HPY07_17020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_17020 PF17200 Single Cache domain 2 HPY07_17025 PF00691 OmpA family HPY07_17025 PF05736 OprF membrane domain HPY07_17030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY07_17030 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY07_17035 PF01797 Transposase IS200 like HPY07_17070 PF13333 Integrase core domain HPY07_17070 PF00665 Integrase core domain HPY07_17070 PF13276 HTH-like domain HPY07_17110 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HPY07_17130 PF17676 LD-carboxypeptidase C-terminal domain HPY07_17130 PF02016 LD-carboxypeptidase N-terminal domain HPY07_17170 PF00583 Acetyltransferase (GNAT) family HPY07_17175 PF01636 Phosphotransferase enzyme family HPY07_17195 PF02281 Transposase Tn5 dimerisation domain HPY07_17195 PF01609 Transposase DDE domain HPY07_17195 PF14706 Transposase DNA-binding HPY07_17230 PF12833 Helix-turn-helix domain HPY07_17230 PF02311 AraC-like ligand binding domain HPY07_17235 PF07715 TonB-dependent Receptor Plug Domain HPY07_17235 PF00593 TonB dependent receptor HPY07_17240 PF07690 Major Facilitator Superfamily HPY07_17245 PF08242 Methyltransferase domain HPY07_17245 PF00668 Condensation domain HPY07_17245 PF00501 AMP-binding enzyme HPY07_17245 PF00550 Phosphopantetheine attachment site HPY07_17250 PF00501 AMP-binding enzyme HPY07_17250 PF13193 AMP-binding enzyme C-terminal domain HPY07_17250 PF00668 Condensation domain HPY07_17250 PF00550 Phosphopantetheine attachment site HPY07_17265 PF00425 chorismate binding enzyme HPY07_17270 PF13193 AMP-binding enzyme C-terminal domain HPY07_17270 PF00501 AMP-binding enzyme HPY07_17275 PF02028 BCCT, betaine/carnitine/choline family transporter HPY07_17280 PF13977 BetI-type transcriptional repressor, C-terminal HPY07_17280 PF00440 Bacterial regulatory proteins, tetR family HPY07_17285 PF00171 Aldehyde dehydrogenase family HPY07_17290 PF00732 GMC oxidoreductase HPY07_17290 PF05199 GMC oxidoreductase HPY07_17295 PF00664 ABC transporter transmembrane region HPY07_17295 PF00005 ABC transporter HPY07_17300 PF00664 ABC transporter transmembrane region HPY07_17300 PF00005 ABC transporter HPY07_17310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_17310 PF00512 His Kinase A (phospho-acceptor) domain HPY07_17310 PF09308 LuxQ, periplasmic HPY07_17310 PF00072 Response regulator receiver domain HPY07_17315 PF13407 Periplasmic binding protein domain HPY07_17325 PF01541 GIY-YIG catalytic domain HPY07_17330 PF04337 Protein of unknown function, DUF480 HPY07_17340 PF04363 Protein of unknown function (DUF496) HPY07_17350 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HPY07_17350 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HPY07_17355 PF00230 Major intrinsic protein HPY07_17360 PF01266 FAD dependent oxidoreductase HPY07_17360 PF04324 BFD-like [2Fe-2S] binding domain HPY07_17365 PF00890 FAD binding domain HPY07_17370 PF02754 Cysteine-rich domain HPY07_17370 PF13183 4Fe-4S dicluster domain HPY07_17375 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY07_17375 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY07_17380 PF00085 Thioredoxin HPY07_17385 PF07690 Major Facilitator Superfamily HPY07_17405 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_17410 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_17415 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY07_17420 PF00005 ABC transporter HPY07_17430 PF05762 VWA domain containing CoxE-like protein HPY07_17435 PF12592 Protein of unknown function (DUF3763) HPY07_17435 PF17868 AAA lid domain HPY07_17435 PF07728 AAA domain (dynein-related subfamily) HPY07_17440 PF00293 NUDIX domain HPY07_17445 PF01212 Beta-eliminating lyase HPY07_17450 PF00034 Cytochrome c HPY07_17455 PF08361 MAATS-type transcriptional repressor, C-terminal region HPY07_17455 PF00440 Bacterial regulatory proteins, tetR family HPY07_17460 PF00271 Helicase conserved C-terminal domain HPY07_17460 PF00270 DEAD/DEAH box helicase HPY07_17465 PF04336 Acyl carrier protein phosphodiesterase HPY07_17470 PF03222 Tryptophan/tyrosine permease family HPY07_17475 PF00672 HAMP domain HPY07_17475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_17475 PF02743 Cache domain HPY07_17480 PF16363 GDP-mannose 4,6 dehydratase HPY07_17485 PF03746 LamB/YcsF family HPY07_17495 PF02626 Carboxyltransferase domain, subdomain A and B HPY07_17505 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY07_17505 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY07_17515 PF00005 ABC transporter HPY07_17520 PF13472 GDSL-like Lipase/Acylhydrolase family HPY07_17525 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY07_17525 PF07055 Enoyl reductase FAD binding domain HPY07_17525 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY07_17530 PF00990 Diguanylate cyclase, GGDEF domain HPY07_17530 PF00498 FHA domain HPY07_17530 PF00563 EAL domain HPY07_17540 PF00684 DnaJ central domain HPY07_17540 PF01556 DnaJ C terminal domain HPY07_17540 PF00226 DnaJ domain HPY07_17555 PF13419 Haloacid dehalogenase-like hydrolase HPY07_17570 PF00294 pfkB family carbohydrate kinase HPY07_17580 PF00270 DEAD/DEAH box helicase HPY07_17580 PF00271 Helicase conserved C-terminal domain HPY07_17580 PF03880 DbpA RNA binding domain HPY07_17585 PF00575 S1 RNA binding domain HPY07_17585 PF08206 Ribonuclease B OB domain HPY07_17585 PF00773 RNB domain HPY07_17595 PF12849 PBP superfamily domain HPY07_17600 PF01575 MaoC like domain HPY07_17605 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HPY07_17610 PF18416 N-acetylglucosamine binding protein domain 2 HPY07_17610 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HPY07_17615 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY07_17615 PF04151 Bacterial pre-peptidase C-terminal domain HPY07_17615 PF03413 Peptidase propeptide and YPEB domain HPY07_17615 PF01447 Thermolysin metallopeptidase, catalytic domain HPY07_17615 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY07_17620 PF04151 Bacterial pre-peptidase C-terminal domain HPY07_17620 PF04389 Peptidase family M28 HPY07_17625 PF00491 Arginase family HPY07_17630 PF17810 Arginine decarboxylase helical bundle domain HPY07_17630 PF17944 Arginine decarboxylase C-terminal helical extension HPY07_17630 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY07_17640 PF00571 CBS domain HPY07_17640 PF03448 MgtE intracellular N domain HPY07_17640 PF01769 Divalent cation transporter HPY07_17650 PF00696 Amino acid kinase family HPY07_17650 PF13840 ACT domain HPY07_17655 PF01329 Pterin 4 alpha carbinolamine dehydratase HPY07_17660 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HPY07_17665 PF13193 AMP-binding enzyme C-terminal domain HPY07_17665 PF00501 AMP-binding enzyme HPY07_17685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_17685 PF03466 LysR substrate binding domain HPY07_17695 PF00892 EamA-like transporter family HPY07_17700 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal HPY07_17700 PF00132 Bacterial transferase hexapeptide (six repeats) HPY07_17700 PF14602 Hexapeptide repeat of succinyl-transferase HPY07_17705 PF00571 CBS domain HPY07_17705 PF03471 Transporter associated domain HPY07_17705 PF01595 Cyclin M transmembrane N-terminal domain HPY07_17710 PF02566 OsmC-like protein HPY07_17715 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY07_17720 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY07_17720 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY07_17740 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY07_17745 PF13520 Amino acid permease HPY07_17750 PF00990 Diguanylate cyclase, GGDEF domain HPY07_17760 PF04397 LytTr DNA-binding domain HPY07_17760 PF00072 Response regulator receiver domain HPY07_17765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_17765 PF06580 Histidine kinase HPY07_17765 PF07694 5TMR of 5TMR-LYT HPY07_17765 PF13492 GAF domain HPY07_17780 PF12704 MacB-like periplasmic core domain HPY07_17780 PF00005 ABC transporter HPY07_17780 PF02687 FtsX-like permease family HPY07_17785 PF00005 ABC transporter HPY07_17795 PF00248 Aldo/keto reductase family HPY07_17800 PF00128 Alpha amylase, catalytic domain HPY07_17810 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY07_17815 PF12262 Bacterial virulence factor lipase N-terminal HPY07_17820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_17820 PF08447 PAS fold HPY07_17820 PF13426 PAS domain HPY07_17825 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY07_17825 PF03413 Peptidase propeptide and YPEB domain HPY07_17825 PF04151 Bacterial pre-peptidase C-terminal domain HPY07_17825 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY07_17825 PF01447 Thermolysin metallopeptidase, catalytic domain HPY07_17830 PF03922 OmpW family HPY07_17840 PF00768 D-alanyl-D-alanine carboxypeptidase HPY07_17845 PF00773 RNB domain HPY07_17845 PF00575 S1 RNA binding domain HPY07_17845 PF17876 Cold shock domain HPY07_17845 PF08206 Ribonuclease B OB domain HPY07_17845 PF08461 Ribonuclease R winged-helix domain HPY07_17850 PF00313 'Cold-shock' DNA-binding domain HPY07_17860 PF00291 Pyridoxal-phosphate dependent enzyme HPY07_17865 PF03466 LysR substrate binding domain HPY07_17865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_17875 PF01979 Amidohydrolase family HPY07_17890 PF00989 PAS fold HPY07_17890 PF00672 HAMP domain HPY07_17890 PF00512 His Kinase A (phospho-acceptor) domain HPY07_17890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_17895 PF00486 Transcriptional regulatory protein, C terminal HPY07_17895 PF00072 Response regulator receiver domain HPY07_17915 PF00589 Phage integrase family HPY07_17915 PF12167 Arm DNA-binding domain HPY07_17930 PF03466 LysR substrate binding domain HPY07_17930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_17935 PF00107 Zinc-binding dehydrogenase HPY07_17935 PF08240 Alcohol dehydrogenase GroES-like domain HPY07_17955 PF18650 Immunomodulating metalloprotease N-terminal domain HPY07_17955 PF13402 Peptidase M60, enhancin and enhancin-like HPY07_17955 PF18642 Immunomodulating metalloprotease helical domain HPY07_17960 PF00313 'Cold-shock' DNA-binding domain HPY07_17965 PF00773 RNB domain HPY07_17965 PF00575 S1 RNA binding domain HPY07_17965 PF08461 Ribonuclease R winged-helix domain HPY07_17965 PF17876 Cold shock domain HPY07_17965 PF08206 Ribonuclease B OB domain HPY07_18085 PF13289 SIR2-like domain HPY07_18090 PF00817 impB/mucB/samB family HPY07_18090 PF11799 impB/mucB/samB family C-terminal domain HPY07_18090 PF11798 IMS family HHH motif HPY07_18090 PF13438 Domain of unknown function (DUF4113) HPY07_18095 PF00717 Peptidase S24-like HPY07_18105 PF06965 Na+/H+ antiporter 1 HPY07_18115 PF00313 'Cold-shock' DNA-binding domain HPY07_18140 PF03354 Phage Terminase HPY07_18155 PF00717 Peptidase S24-like HPY07_18155 PF01381 Helix-turn-helix HPY07_18170 PF12167 Arm DNA-binding domain HPY07_18170 PF00589 Phage integrase family HPY07_18185 PF00107 Zinc-binding dehydrogenase HPY07_18185 PF08240 Alcohol dehydrogenase GroES-like domain HPY07_18190 PF00155 Aminotransferase class I and II HPY07_18205 PF03466 LysR substrate binding domain HPY07_18205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_18210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY07_18235 PF01966 HD domain HPY07_18240 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HPY07_18240 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HPY07_18245 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HPY07_18250 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY07_18250 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HPY07_18275 PF02595 Glycerate kinase family HPY07_18280 PF02447 GntP family permease HPY07_18285 PF17853 GGDEF-like domain HPY07_18285 PF05651 Putative sugar diacid recognition HPY07_18285 PF13556 PucR C-terminal helix-turn-helix domain HPY07_18290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_18290 PF00672 HAMP domain HPY07_18295 PF01243 Pyridoxamine 5'-phosphate oxidase HPY07_18300 PF06228 Haem utilisation ChuX/HutX HPY07_18305 PF04055 Radical SAM superfamily HPY07_18310 PF03544 Gram-negative bacterial TonB protein C-terminal HPY07_18315 PF01618 MotA/TolQ/ExbB proton channel family HPY07_18320 PF02472 Biopolymer transport protein ExbD/TolR HPY07_18325 PF01497 Periplasmic binding protein HPY07_18330 PF01032 FecCD transport family HPY07_18335 PF00005 ABC transporter HPY07_18365 PF02743 Cache domain HPY07_18365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_18365 PF00672 HAMP domain HPY07_18370 PF03473 MOSC domain HPY07_18370 PF03476 MOSC N-terminal beta barrel domain HPY07_18370 PF03476 MOSC N-terminal beta barrel domain HPY07_18370 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY07_18370 PF03473 MOSC domain HPY07_18370 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY07_18375 PF01979 Amidohydrolase family HPY07_18380 PF05958 tRNA (Uracil-5-)-methyltransferase HPY07_18385 PF05661 Protein of unknown function (DUF808) HPY07_18390 PF00990 Diguanylate cyclase, GGDEF domain HPY07_18390 PF17151 Periplasmic sensor domain HPY07_18400 PF00313 'Cold-shock' DNA-binding domain HPY07_18425 PF08448 PAS fold HPY07_18425 PF00990 Diguanylate cyclase, GGDEF domain HPY07_18430 PF08220 DeoR-like helix-turn-helix domain HPY07_18430 PF00455 DeoR C terminal sensor domain HPY07_18445 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_18450 PF14785 Maltose transport system permease protein MalF P2 domain HPY07_18450 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_18455 PF01547 Bacterial extracellular solute-binding protein HPY07_18460 PF00005 ABC transporter HPY07_18460 PF08402 TOBE domain HPY07_18465 PF13302 Acetyltransferase (GNAT) domain HPY07_18480 PF01906 Putative heavy-metal-binding HPY07_18485 PF00196 Bacterial regulatory proteins, luxR family HPY07_18495 PF00072 Response regulator receiver domain HPY07_18495 PF01584 CheW-like domain HPY07_18500 PF01047 MarR family HPY07_18505 PF00990 Diguanylate cyclase, GGDEF domain HPY07_18520 PF00563 EAL domain HPY07_18520 PF03707 Bacterial signalling protein N terminal repeat HPY07_18520 PF00990 Diguanylate cyclase, GGDEF domain HPY07_18540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_18540 PF03466 LysR substrate binding domain HPY07_18545 PF00563 EAL domain HPY07_18545 PF00990 Diguanylate cyclase, GGDEF domain HPY07_18555 PF02678 Pirin HPY07_18555 PF05726 Pirin C-terminal cupin domain HPY07_18560 PF06865 Pyrimidine/purine nucleoside phosphorylase HPY07_18570 PF07690 Major Facilitator Superfamily HPY07_18575 PF12729 Four helix bundle sensory module for signal transduction HPY07_18575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_18575 PF00672 HAMP domain HPY07_18580 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY07_18580 PF13654 AAA domain HPY07_18590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY07_18590 PF00005 ABC transporter HPY07_18595 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY07_18600 PF00672 HAMP domain HPY07_18600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_18600 PF17200 Single Cache domain 2 HPY07_18610 PF03466 LysR substrate binding domain HPY07_18610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_18620 PF02652 L-lactate permease HPY07_18625 PF01070 FMN-dependent dehydrogenase HPY07_18635 PF03618 Kinase/pyrophosphorylase HPY07_18640 PF00391 PEP-utilising enzyme, mobile domain HPY07_18640 PF02896 PEP-utilising enzyme, TIM barrel domain HPY07_18640 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HPY07_18645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_18645 PF08447 PAS fold HPY07_18650 PF01554 MatE HPY07_18665 PF03475 3-alpha domain HPY07_18665 PF03473 MOSC domain HPY07_18670 PF00270 DEAD/DEAH box helicase HPY07_18670 PF00271 Helicase conserved C-terminal domain HPY07_18675 PF03786 D-mannonate dehydratase (UxuA) HPY07_18680 PF00392 Bacterial regulatory proteins, gntR family HPY07_18680 PF07729 FCD domain HPY07_18685 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY07_18690 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HPY07_18695 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY07_18700 PF08125 Mannitol dehydrogenase C-terminal domain HPY07_18700 PF01232 Mannitol dehydrogenase Rossmann domain HPY07_18705 PF02614 Glucuronate isomerase HPY07_18710 PF00294 pfkB family carbohydrate kinase HPY07_18715 PF01081 KDPG and KHG aldolase HPY07_18720 PF10688 Bacterial inner membrane protein HPY07_18725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_18725 PF03466 LysR substrate binding domain HPY07_18735 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY07_18745 PF00005 ABC transporter HPY07_18745 PF00664 ABC transporter transmembrane region HPY07_18755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY07_18765 PF01810 LysE type translocator HPY07_18770 PF12833 Helix-turn-helix domain HPY07_18785 PF01557 Fumarylacetoacetate (FAA) hydrolase family HPY07_18790 PF01047 MarR family HPY07_18795 PF02566 OsmC-like protein HPY07_18800 PF13609 Gram-negative porin HPY07_18805 PF00892 EamA-like transporter family HPY07_18810 PF00462 Glutaredoxin HPY07_18815 PF07670 Nucleoside recognition HPY07_18820 PF07670 Nucleoside recognition HPY07_18825 PF03600 Citrate transporter HPY07_18835 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HPY07_18835 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY07_18840 PF06029 AlkA N-terminal domain HPY07_18840 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY07_18845 PF07681 DoxX HPY07_18850 PF03466 LysR substrate binding domain HPY07_18850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_18870 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HPY07_18880 PF07148 Maltose operon periplasmic protein precursor (MalM) HPY07_18885 PF02264 LamB porin HPY07_18890 PF00128 Alpha amylase, catalytic domain HPY07_18890 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY07_18900 PF00672 HAMP domain HPY07_18900 PF12729 Four helix bundle sensory module for signal transduction HPY07_18900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_18910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_18910 PF00672 HAMP domain HPY07_18920 PF00793 DAHP synthetase I family HPY07_18925 PF00005 ABC transporter HPY07_18930 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_18935 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY07_18940 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_18945 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY07_18945 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY07_18945 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY07_18945 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY07_18950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY07_18950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY07_18950 PF02378 Phosphotransferase system, EIIC HPY07_18955 PF08125 Mannitol dehydrogenase C-terminal domain HPY07_18955 PF01232 Mannitol dehydrogenase Rossmann domain HPY07_18960 PF05068 Mannitol repressor HPY07_18965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY07_18995 PF13460 NAD(P)H-binding HPY07_19000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_19000 PF03466 LysR substrate binding domain HPY07_19005 PF02743 Cache domain HPY07_19005 PF00672 HAMP domain HPY07_19005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_19010 PF00106 short chain dehydrogenase HPY07_19015 PF03466 LysR substrate binding domain HPY07_19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY07_19020 PF04013 Putative SAM-dependent RNA methyltransferase HPY07_19025 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY07_19035 PF13520 Amino acid permease HPY07_19040 PF01276 Orn/Lys/Arg decarboxylase, major domain HPY07_19040 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HPY07_19040 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HPY07_19050 PF03472 Autoinducer binding domain HPY07_19050 PF00196 Bacterial regulatory proteins, luxR family HPY07_19070 PF00171 Aldehyde dehydrogenase family HPY07_19075 PF01037 Lrp/AsnC ligand binding domain HPY07_19080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_19080 PF00672 HAMP domain HPY07_19080 PF02743 Cache domain HPY07_19090 PF00474 Sodium:solute symporter family HPY07_19100 PF14850 DNA-binding domain of Proline dehydrogenase HPY07_19100 PF01619 Proline dehydrogenase HPY07_19100 PF00171 Aldehyde dehydrogenase family HPY07_19100 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HPY07_19105 PF12833 Helix-turn-helix domain HPY07_19115 PF03781 Sulfatase-modifying factor enzyme 1 HPY07_19120 PF00196 Bacterial regulatory proteins, luxR family HPY07_19120 PF00072 Response regulator receiver domain HPY07_19125 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HPY07_19125 PF01243 Pyridoxamine 5'-phosphate oxidase HPY07_19130 PF00529 HlyD membrane-fusion protein of T1SS HPY07_19145 PF00664 ABC transporter transmembrane region HPY07_19145 PF00005 ABC transporter HPY07_19145 PF03412 Peptidase C39 family HPY07_19155 PF00072 Response regulator receiver domain HPY07_19155 PF00990 Diguanylate cyclase, GGDEF domain HPY07_19165 PF02743 Cache domain HPY07_19165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_19165 PF00672 HAMP domain HPY07_19170 PF01339 CheB methylesterase HPY07_19170 PF00072 Response regulator receiver domain HPY07_19175 PF03975 CheD chemotactic sensory transduction HPY07_19180 PF03705 CheR methyltransferase, all-alpha domain HPY07_19180 PF01739 CheR methyltransferase, SAM binding domain HPY07_19185 PF02203 Tar ligand binding domain homologue HPY07_19185 PF00672 HAMP domain HPY07_19185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY07_19190 PF01584 CheW-like domain HPY07_19195 PF01584 CheW-like domain HPY07_19200 PF01627 Hpt domain HPY07_19200 PF02895 Signal transducing histidine kinase, homodimeric domain HPY07_19200 PF09078 CheY binding HPY07_19200 PF01584 CheW-like domain HPY07_19200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_19205 PF00072 Response regulator receiver domain HPY07_19220 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_19225 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY07_19225 PF00528 Binding-protein-dependent transport system inner membrane component HPY07_19230 PF00005 ABC transporter HPY07_19230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY07_19235 PF08019 Phosphoethanolamine transferase EptA/EptB HPY07_19235 PF00884 Sulfatase HPY07_19240 PF08521 Two-component sensor kinase N-terminal HPY07_19240 PF00512 His Kinase A (phospho-acceptor) domain HPY07_19240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY07_19245 PF00072 Response regulator receiver domain HPY07_19245 PF00486 Transcriptional regulatory protein, C terminal HPY07_19255 PF00106 short chain dehydrogenase HPY07_19265 PF00501 AMP-binding enzyme HPY07_19275 PF13718 GNAT acetyltransferase 2 HPY07_19275 PF05127 Helicase HPY07_19280 PF13416 Bacterial extracellular solute-binding protein