locus-tag class description V060002_00001 PF00258 Flavodoxin V060002_00005 PF00809 Pterin binding enzyme V060002_00006 PF00893 Small Multidrug Resistance protein V060002_00007 PF01909 Nucleotidyltransferase domain V060002_00007 PF13427 Domain of unknown function (DUF4111) V060002_00008 PF13495 Phage integrase, N-terminal SAM-like domain V060002_00008 PF00589 Phage integrase family V060002_00009 PF06616 BsuBI/PstI restriction endonuclease domain V060002_00009 PF17728 BsuBI/PstI restriction endonuclease HTH domain V060002_00019 PF06122 Conjugative relaxosome accessory transposon protein V060002_00029 PF02899 Phage integrase, N-terminal SAM-like domain V060002_00029 PF00589 Phage integrase family V060002_00030 PF12631 MnmE helical domain V060002_00030 PF10396 GTP-binding protein TrmE N-terminus V060002_00030 PF01926 50S ribosome-binding GTPase V060002_00031 PF14849 YidC periplasmic domain V060002_00031 PF02096 60Kd inner membrane protein V060002_00032 PF00825 Ribonuclease P V060002_00033 PF00468 Ribosomal protein L34 V060002_00034 PF00005 ABC transporter V060002_00035 PF00528 Binding-protein-dependent transport system inner membrane component V060002_00036 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_00037 PF00308 Bacterial dnaA protein V060002_00037 PF08299 Bacterial dnaA protein helix-turn-helix V060002_00037 PF11638 DnaA N-terminal domain V060002_00038 PF00712 DNA polymerase III beta subunit, N-terminal domain V060002_00038 PF02767 DNA polymerase III beta subunit, central domain V060002_00038 PF02768 DNA polymerase III beta subunit, C-terminal domain V060002_00039 PF02463 RecF/RecN/SMC N terminal domain V060002_00040 PF18053 DNA gyrase B subunit insert domain V060002_00040 PF01751 Toprim domain V060002_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00040 PF00204 DNA gyrase B V060002_00040 PF00986 DNA gyrase B subunit, carboxyl terminus V060002_00043 PF00011 Hsp20/alpha crystallin family V060002_00044 PF00155 Aminotransferase class I and II V060002_00045 PF05746 DALR anticodon binding domain V060002_00045 PF02092 Glycyl-tRNA synthetase beta subunit V060002_00046 PF02091 Glycyl-tRNA synthetase alpha subunit V060002_00047 PF01169 Uncharacterized protein family UPF0016 V060002_00049 PF01206 Sulfurtransferase TusA V060002_00051 PF00107 Zinc-binding dehydrogenase V060002_00051 PF08240 Alcohol dehydrogenase GroES-like domain V060002_00052 PF00291 Pyridoxal-phosphate dependent enzyme V060002_00052 PF00585 C-terminal regulatory domain of Threonine dehydratase V060002_00053 PF00920 Dehydratase family V060002_00054 PF01063 Amino-transferase class IV V060002_00056 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V060002_00056 PF00205 Thiamine pyrophosphate enzyme, central domain V060002_00056 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V060002_00057 PF13335 Magnesium chelatase, subunit ChlI C-terminal V060002_00057 PF01078 Magnesium chelatase, subunit ChlI V060002_00058 PF01553 Acyltransferase V060002_00059 PF01323 DSBA-like thioredoxin domain V060002_00060 PF01636 Phosphotransferase enzyme family V060002_00061 PF12801 4Fe-4S binding domain V060002_00061 PF13746 4Fe-4S dicluster domain V060002_00061 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase V060002_00062 PF06288 Protein of unknown function (DUF1040) V060002_00063 PF07070 SpoOM protein V060002_00064 PF03006 Haemolysin-III related V060002_00066 PF02386 Cation transport protein V060002_00067 PF02254 TrkA-N domain V060002_00067 PF02080 TrkA-C domain V060002_00068 PF01189 16S rRNA methyltransferase RsmB/F V060002_00068 PF01029 NusB family V060002_00069 PF00551 Formyl transferase V060002_00069 PF02911 Formyl transferase, C-terminal domain V060002_00070 PF01327 Polypeptide deformylase V060002_00071 PF01476 LysM domain V060002_00072 PF17782 DprA winged helix domain V060002_00072 PF02481 DNA recombination-mediator protein A V060002_00073 PF04361 Protein of unknown function (DUF494) V060002_00074 PF01396 Topoisomerase DNA binding C4 zinc finger V060002_00075 PF02222 ATP-grasp domain V060002_00075 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain V060002_00076 PF00731 AIR carboxylase V060002_00077 PF01300 Telomere recombination V060002_00078 PF01218 Coproporphyrinogen III oxidase V060002_00079 PF18317 Shikimate 5'-dehydrogenase C-terminal domain V060002_00079 PF01488 Shikimate / quinate 5-dehydrogenase V060002_00079 PF08501 Shikimate dehydrogenase substrate binding domain V060002_00081 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_00088 PF02537 CrcB-like protein, Camphor Resistance (CrcB) V060002_00089 PF01964 Radical SAM ThiC family V060002_00089 PF13667 ThiC-associated domain V060002_00090 PF02581 Thiamine monophosphate synthase V060002_00091 PF00899 ThiF family V060002_00092 PF02597 ThiS family V060002_00093 PF05690 Thiazole biosynthesis protein ThiG V060002_00094 PF06968 Biotin and Thiamin Synthesis associated domain V060002_00094 PF04055 Radical SAM superfamily V060002_00095 PF01321 Creatinase/Prolidase N-terminal domain V060002_00095 PF00557 Metallopeptidase family M24 V060002_00095 PF01321 Creatinase/Prolidase N-terminal domain V060002_00095 PF00557 Metallopeptidase family M24 V060002_00096 PF03466 LysR substrate binding domain V060002_00096 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00097 PF07690 Major Facilitator Superfamily V060002_00099 PF01037 Lrp/AsnC ligand binding domain V060002_00100 PF08448 PAS fold V060002_00100 PF00990 Diguanylate cyclase, GGDEF domain V060002_00100 PF00563 EAL domain V060002_00101 PF04445 Putative SAM-dependent methyltransferase V060002_00103 PF00892 EamA-like transporter family V060002_00104 PF00582 Universal stress protein family V060002_00105 PF00210 Ferritin-like domain V060002_00106 PF10625 Universal stress protein B (UspB) V060002_00109 PF02646 RmuC family V060002_00110 PF01209 ubiE/COQ5 methyltransferase family V060002_00111 PF02036 SCP-2 sterol transfer family V060002_00112 PF03109 ABC1 family V060002_00113 PF02416 mttA/Hcf106 family V060002_00114 PF02416 mttA/Hcf106 family V060002_00115 PF00902 Sec-independent protein translocase protein (TatC) V060002_00116 PF03150 Di-haem cytochrome c peroxidase V060002_00116 PF00034 Cytochrome c V060002_00117 PF01554 MatE V060002_00119 PF01726 LexA DNA binding domain V060002_00119 PF00717 Peptidase S24-like V060002_00120 PF01553 Acyltransferase V060002_00121 PF01040 UbiA prenyltransferase family V060002_00122 PF04345 Chorismate lyase V060002_00123 PF03748 Flagellar basal body-associated protein FliL V060002_00124 PF00672 HAMP domain V060002_00124 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_00124 PF02203 Tar ligand binding domain homologue V060002_00125 PF01694 Rhomboid family V060002_00125 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease V060002_00126 PF00581 Rhodanese-like domain V060002_00127 PF01026 TatD related DNase V060002_00128 PF00490 Delta-aminolevulinic acid dehydratase V060002_00130 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V060002_00130 PF00476 DNA polymerase family A V060002_00130 PF01612 3'-5' exonuclease V060002_00130 PF01367 5'-3' exonuclease, C-terminal SAM fold V060002_00131 PF01926 50S ribosome-binding GTPase V060002_00132 PF00034 Cytochrome c V060002_00134 PF04220 Der GTPase activator (YihI) V060002_00135 PF10675 Protein of unknown function (DUF2489) V060002_00136 PF04055 Radical SAM superfamily V060002_00136 PF06969 HemN C-terminal domain V060002_00137 PF07219 HemY protein N-terminus V060002_00138 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase V060002_00139 PF02602 Uroporphyrinogen-III synthase HemD V060002_00140 PF03900 Porphobilinogen deaminase, C-terminal domain V060002_00140 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain V060002_00141 PF12633 Adenylate cyclase NT domain V060002_00141 PF01295 Adenylate cyclase, class-I V060002_00142 PF01491 Frataxin-like domain V060002_00143 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain V060002_00143 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V060002_00144 PF01678 Diaminopimelate epimerase V060002_00145 PF04340 Protein of unknown function, DUF484 V060002_00146 PF00589 Phage integrase family V060002_00146 PF02899 Phage integrase, N-terminal SAM-like domain V060002_00147 PF13419 Haloacid dehalogenase-like hydrolase V060002_00148 PF08495 FIST N domain V060002_00148 PF00990 Diguanylate cyclase, GGDEF domain V060002_00148 PF10442 FIST C domain V060002_00148 PF00563 EAL domain V060002_00152 PF12146 Serine aminopeptidase, S33 V060002_00153 PF01810 LysE type translocator V060002_00154 PF00563 EAL domain V060002_00154 PF08668 HDOD domain V060002_00155 PF00210 Ferritin-like domain V060002_00161 PF02881 SRP54-type protein, helical bundle domain V060002_00161 PF00448 SRP54-type protein, GTPase domain V060002_00162 PF00005 ABC transporter V060002_00163 PF18075 FtsX extracellular domain V060002_00164 PF04545 Sigma-70, region 4 V060002_00164 PF00140 Sigma-70 factor, region 1.2 V060002_00164 PF04542 Sigma-70 region 2 V060002_00165 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_00165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V060002_00166 PF00440 Bacterial regulatory proteins, tetR family V060002_00168 PF05958 tRNA (Uracil-5-)-methyltransferase V060002_00169 PF00593 TonB dependent receptor V060002_00169 PF07715 TonB-dependent Receptor Plug Domain V060002_00170 PF04151 Bacterial pre-peptidase C-terminal domain V060002_00170 PF05922 Peptidase inhibitor I9 V060002_00170 PF00082 Subtilase family V060002_00171 PF01177 Asp/Glu/Hydantoin racemase V060002_00185 PF00962 Adenosine/AMP deaminase V060002_00186 PF03707 Bacterial signalling protein N terminal repeat V060002_00186 PF13188 PAS domain V060002_00186 PF00990 Diguanylate cyclase, GGDEF domain V060002_00186 PF00563 EAL domain V060002_00187 PF02954 Bacterial regulatory protein, Fis family V060002_00187 PF00072 Response regulator receiver domain V060002_00187 PF00158 Sigma-54 interaction domain V060002_00188 PF00512 His Kinase A (phospho-acceptor) domain V060002_00188 PF00989 PAS fold V060002_00188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00190 PF00120 Glutamine synthetase, catalytic domain V060002_00190 PF03951 Glutamine synthetase, beta-Grasp domain V060002_00194 PF03631 Virulence factor BrkB V060002_00195 PF02580 D-Tyr-tRNA(Tyr) deacylase V060002_00196 PF09500 Putative thioesterase (yiiD_Cterm) V060002_00196 PF00583 Acetyltransferase (GNAT) family V060002_00198 PF01293 Phosphoenolpyruvate carboxykinase V060002_00199 PF01430 Hsp33 protein V060002_00200 PF01479 S4 domain V060002_00201 PF11356 Type II secretion system protein C V060002_00202 PF00263 Bacterial type II and III secretion system protein V060002_00202 PF03958 Bacterial type II/III secretion system short domain V060002_00203 PF00437 Type II/IV secretion system protein V060002_00204 PF00482 Type II secretion system (T2SS), protein F V060002_00205 PF08334 Type II secretion system (T2SS), protein G V060002_00205 PF07963 Prokaryotic N-terminal methylation motif V060002_00206 PF12019 Type II transport protein GspH V060002_00207 PF02501 Type II secretion system (T2SS), protein I V060002_00207 PF07963 Prokaryotic N-terminal methylation motif V060002_00208 PF11612 Type II secretion system (T2SS), protein J V060002_00208 PF07963 Prokaryotic N-terminal methylation motif V060002_00209 PF03934 Type II secretion system (T2SS), protein K V060002_00210 PF12693 GspL periplasmic domain V060002_00210 PF05134 Type II secretion system (T2SS), protein L V060002_00211 PF04612 Type II secretion system (T2SS), protein M V060002_00212 PF01203 Type II secretion system (T2SS), protein N V060002_00213 PF00459 Inositol monophosphatase family V060002_00214 PF00293 NUDIX domain V060002_00215 PF01521 Iron-sulphur cluster biosynthesis V060002_00215 PF01106 NifU-like domain V060002_00216 PF00156 Phosphoribosyl transferase domain V060002_00217 PF00561 alpha/beta hydrolase fold V060002_00219 PF17674 HHH domain V060002_00219 PF00575 S1 RNA binding domain V060002_00219 PF09371 Tex-like protein N-terminal domain V060002_00219 PF16921 Tex protein YqgF-like domain V060002_00220 PF03449 Transcription elongation factor, N-terminal V060002_00220 PF01272 Transcription elongation factor, GreA/GreB, C-term V060002_00221 PF00486 Transcriptional regulatory protein, C terminal V060002_00221 PF00072 Response regulator receiver domain V060002_00222 PF00672 HAMP domain V060002_00222 PF00512 His Kinase A (phospho-acceptor) domain V060002_00222 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00223 PF00860 Permease family V060002_00224 PF17191 RecG wedge domain V060002_00224 PF00270 DEAD/DEAH box helicase V060002_00224 PF00271 Helicase conserved C-terminal domain V060002_00225 PF13291 ACT domain V060002_00225 PF04607 Region found in RelA / SpoT proteins V060002_00225 PF02824 TGS domain V060002_00226 PF01192 RNA polymerase Rpb6 V060002_00227 PF00625 Guanylate kinase V060002_00228 PF02592 Putative vitamin uptake transporter V060002_00229 PF00474 Sodium:solute symporter family V060002_00231 PF02080 TrkA-C domain V060002_00231 PF00999 Sodium/hydrogen exchanger family V060002_00231 PF03471 Transporter associated domain V060002_00232 PF00196 Bacterial regulatory proteins, luxR family V060002_00232 PF00072 Response regulator receiver domain V060002_00233 PF11412 Disulphide bond corrector protein DsbC V060002_00233 PF02683 Cytochrome C biogenesis protein transmembrane region V060002_00234 PF11852 Domain of unknown function (DUF3372) V060002_00234 PF03714 Bacterial pullanase-associated domain V060002_00234 PF18494 Pullulanase Ins domain V060002_00234 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V060002_00234 PF17967 Pullulanase N2 domain V060002_00236 PF03605 Anaerobic c4-dicarboxylate membrane transporter V060002_00237 PF03605 Anaerobic c4-dicarboxylate membrane transporter V060002_00238 PF10415 Fumarase C C-terminus V060002_00238 PF00206 Lyase V060002_00239 PF17158 Membrane-associated sensor, integral membrane domain V060002_00239 PF00990 Diguanylate cyclase, GGDEF domain V060002_00240 PF04186 FxsA cytoplasmic membrane protein V060002_00241 PF00588 SpoU rRNA Methylase family V060002_00242 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V060002_00242 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V060002_00243 PF00672 HAMP domain V060002_00243 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00243 PF16527 Two-component sensor protein CpxA, periplasmic domain V060002_00243 PF00512 His Kinase A (phospho-acceptor) domain V060002_00244 PF00072 Response regulator receiver domain V060002_00244 PF00486 Transcriptional regulatory protein, C terminal V060002_00246 PF01545 Cation efflux family V060002_00246 PF16916 Dimerisation domain of Zinc Transporter V060002_00247 PF00365 Phosphofructokinase V060002_00248 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded V060002_00249 PF02219 Methylenetetrahydrofolate reductase V060002_00250 PF00742 Homoserine dehydrogenase V060002_00250 PF00696 Amino acid kinase family V060002_00250 PF03447 Homoserine dehydrogenase, NAD binding domain V060002_00251 PF01053 Cys/Met metabolism PLP-dependent enzyme V060002_00252 PF01340 Met Apo-repressor, MetJ V060002_00253 PF03949 Malic enzyme, NAD binding domain V060002_00253 PF00390 Malic enzyme, N-terminal domain V060002_00254 PF01197 Ribosomal protein L31 V060002_00255 PF18074 Primosomal protein N C-terminal domain V060002_00255 PF17764 3′ DNA-binding domain (3′BD) V060002_00255 PF00270 DEAD/DEAH box helicase V060002_00255 PF18319 PriA DNA helicase Cys-rich region (CRR) domain V060002_00255 PF00271 Helicase conserved C-terminal domain V060002_00256 PF00356 Bacterial regulatory proteins, lacI family V060002_00257 PF05036 Sporulation related domain V060002_00258 PF00227 Proteasome subunit V060002_00259 PF10431 C-terminal, D2-small domain, of ClpB protein V060002_00259 PF07724 AAA domain (Cdc48 subfamily) V060002_00259 PF00004 ATPase family associated with various cellular activities (AAA) V060002_00260 PF01040 UbiA prenyltransferase family V060002_00261 PF03737 Aldolase/RraA V060002_00263 PF00121 Triosephosphate isomerase V060002_00267 PF08220 DeoR-like helix-turn-helix domain V060002_00267 PF00455 DeoR C terminal sensor domain V060002_00268 PF00166 Chaperonin 10 Kd subunit V060002_00269 PF00118 TCP-1/cpn60 chaperonin family V060002_00271 PF04055 Radical SAM superfamily V060002_00272 PF01132 Elongation factor P (EF-P) OB domain V060002_00272 PF09285 Elongation factor P, C-terminal V060002_00272 PF08207 Elongation factor P (EF-P) KOW-like domain V060002_00273 PF02313 Fumarate reductase subunit D V060002_00274 PF02300 Fumarate reductase subunit C V060002_00275 PF13183 4Fe-4S dicluster domain V060002_00275 PF13085 2Fe-2S iron-sulfur cluster binding domain V060002_00276 PF00890 FAD binding domain V060002_00276 PF02910 Fumarate reductase flavoprotein C-term V060002_00277 PF00152 tRNA synthetases class II (D, K and N) V060002_00278 PF00581 Rhodanese-like domain V060002_00279 PF02556 Preprotein translocase subunit SecB V060002_00280 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus V060002_00280 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus V060002_00281 PF06426 Serine acetyltransferase, N-terminal V060002_00281 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_00283 PF00311 Phosphoenolpyruvate carboxylase V060002_00284 PF07687 Peptidase dimerisation domain V060002_00284 PF01546 Peptidase family M20/M25/M40 V060002_00285 PF02774 Semialdehyde dehydrogenase, dimerisation domain V060002_00285 PF01118 Semialdehyde dehydrogenase, NAD binding domain V060002_00286 PF00696 Amino acid kinase family V060002_00287 PF00764 Arginosuccinate synthase V060002_00288 PF00206 Lyase V060002_00288 PF14698 Argininosuccinate lyase C-terminal V060002_00290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V060002_00290 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_00291 PF08534 Redoxin V060002_00291 PF00462 Glutaredoxin V060002_00292 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00292 PF03466 LysR substrate binding domain V060002_00293 PF17092 Penicillin-binding protein OB-like domain V060002_00293 PF00912 Transglycosylase V060002_00293 PF00905 Penicillin binding protein transpeptidase domain V060002_00298 PF03958 Bacterial type II/III secretion system short domain V060002_00298 PF00263 Bacterial type II and III secretion system protein V060002_00298 PF11741 AMIN domain V060002_00298 PF07660 Secretin and TonB N terminus short domain V060002_00299 PF01202 Shikimate kinase V060002_00300 PF01761 3-dehydroquinate synthase V060002_00302 PF02086 D12 class N6 adenine-specific DNA methyltransferase V060002_00303 PF00834 Ribulose-phosphate 3 epimerase family V060002_00304 PF13419 Haloacid dehalogenase-like hydrolase V060002_00305 PF00579 tRNA synthetases class I (W and Y) V060002_00308 PF04055 Radical SAM superfamily V060002_00308 PF18693 TRAM domain V060002_00308 PF00919 Uncharacterized protein family UPF0004 V060002_00309 PF00117 Glutamine amidotransferase class-I V060002_00310 PF00202 Aminotransferase class-III V060002_00311 PF04958 Arginine N-succinyltransferase beta subunit V060002_00312 PF00171 Aldehyde dehydrogenase family V060002_00314 PF00027 Cyclic nucleotide-binding domain V060002_00314 PF13545 Crp-like helix-turn-helix domain V060002_00315 PF00485 Phosphoribulokinase / Uridine kinase family V060002_00316 PF06794 Uncharacterised protein family (UPF0270) V060002_00317 PF00561 alpha/beta hydrolase fold V060002_00319 PF12848 ABC transporter V060002_00319 PF00005 ABC transporter V060002_00320 PF02525 Flavodoxin-like fold V060002_00321 PF02254 TrkA-N domain V060002_00321 PF00999 Sodium/hydrogen exchanger family V060002_00323 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V060002_00324 PF01112 Asparaginase V060002_00325 PF00709 Adenylosuccinate synthetase V060002_00326 PF08238 Sel1 repeat V060002_00327 PF11893 Domain of unknown function (DUF3413) V060002_00327 PF00884 Sulfatase V060002_00328 PF08206 Ribonuclease B OB domain V060002_00328 PF00773 RNB domain V060002_00328 PF00575 S1 RNA binding domain V060002_00328 PF17876 Cold shock domain V060002_00328 PF08461 Ribonuclease R winged-helix domain V060002_00329 PF00588 SpoU rRNA Methylase family V060002_00329 PF08032 RNA 2'-O ribose methyltransferase substrate binding V060002_00330 PF00338 Ribosomal protein S10p/S20e V060002_00331 PF00297 Ribosomal protein L3 V060002_00332 PF00573 Ribosomal protein L4/L1 family V060002_00333 PF00276 Ribosomal protein L23 V060002_00334 PF00181 Ribosomal Proteins L2, RNA binding domain V060002_00334 PF03947 Ribosomal Proteins L2, C-terminal domain V060002_00335 PF00203 Ribosomal protein S19 V060002_00336 PF00237 Ribosomal protein L22p/L17e V060002_00337 PF00189 Ribosomal protein S3, C-terminal domain V060002_00337 PF07650 KH domain V060002_00338 PF00252 Ribosomal protein L16p/L10e V060002_00339 PF00831 Ribosomal L29 protein V060002_00340 PF00366 Ribosomal protein S17 V060002_00341 PF00238 Ribosomal protein L14p/L23e V060002_00342 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 V060002_00342 PF00467 KOW motif V060002_00343 PF00281 Ribosomal protein L5 V060002_00343 PF00673 ribosomal L5P family C-terminus V060002_00344 PF00253 Ribosomal protein S14p/S29e V060002_00345 PF00410 Ribosomal protein S8 V060002_00346 PF00347 Ribosomal protein L6 V060002_00347 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast V060002_00348 PF03719 Ribosomal protein S5, C-terminal domain V060002_00348 PF00333 Ribosomal protein S5, N-terminal domain V060002_00349 PF00327 Ribosomal protein L30p/L7e V060002_00350 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A V060002_00351 PF00344 SecY translocase V060002_00352 PF00444 Ribosomal protein L36 V060002_00353 PF00416 Ribosomal protein S13/S18 V060002_00354 PF00411 Ribosomal protein S11 V060002_00355 PF01479 S4 domain V060002_00355 PF00163 Ribosomal protein S4/S9 N-terminal domain V060002_00356 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain V060002_00356 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain V060002_00356 PF01000 RNA polymerase Rpb3/RpoA insert domain V060002_00357 PF01196 Ribosomal protein L17 V060002_00359 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V060002_00359 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V060002_00360 PF08525 Opacity-associated protein A N-terminal motif V060002_00360 PF04225 Opacity-associated protein A LysM-like domain V060002_00361 PF00892 EamA-like transporter family V060002_00362 PF13673 Acetyltransferase (GNAT) domain V060002_00363 PF03880 DbpA RNA binding domain V060002_00363 PF00270 DEAD/DEAH box helicase V060002_00363 PF00271 Helicase conserved C-terminal domain V060002_00365 PF02872 5'-nucleotidase, C-terminal domain V060002_00365 PF00149 Calcineurin-like phosphoesterase V060002_00366 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V060002_00366 PF10414 Sirohaem synthase dimerisation region V060002_00366 PF14824 Sirohaem biosynthesis protein central V060002_00367 PF01507 Phosphoadenosine phosphosulfate reductase family V060002_00368 PF00009 Elongation factor Tu GTP binding domain V060002_00373 PF00005 ABC transporter V060002_00375 PF10795 Protein of unknown function (DUF2607) V060002_00376 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) V060002_00377 PF01625 Peptide methionine sulfoxide reductase V060002_00378 PF01103 Surface antigen V060002_00378 PF07244 Surface antigen variable number repeat V060002_00378 PF17243 POTRA domain TamA domain 1 V060002_00379 PF04357 TamB, inner membrane protein subunit of TAM complex V060002_00380 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like V060002_00381 PF00719 Inorganic pyrophosphatase V060002_00382 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain V060002_00383 PF01225 Mur ligase family, catalytic domain V060002_00383 PF08245 Mur ligase middle domain V060002_00383 PF02875 Mur ligase family, glutamate ligase domain V060002_00384 PF02441 Flavoprotein V060002_00386 PF00528 Binding-protein-dependent transport system inner membrane component V060002_00387 PF00005 ABC transporter V060002_00388 PF04751 Protein of unknown function (DUF615) V060002_00389 PF01523 Putative modulator of DNA gyrase V060002_00390 PF03448 MgtE intracellular N domain V060002_00390 PF01769 Divalent cation transporter V060002_00390 PF00571 CBS domain V060002_00391 PF00381 PTS HPr component phosphorylation site V060002_00392 PF03668 P-loop ATPase protein family V060002_00393 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V060002_00394 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V060002_00395 PF04963 Sigma-54 factor, core binding domain V060002_00395 PF04552 Sigma-54, DNA binding domain V060002_00395 PF00309 Sigma-54 factor, Activator interacting domain (AID) V060002_00396 PF12399 Branched-chain amino acid ATP-binding cassette transporter V060002_00396 PF00005 ABC transporter V060002_00397 PF03968 OstA-like protein V060002_00400 PF00571 CBS domain V060002_00400 PF01380 SIS domain V060002_00401 PF01699 Sodium/calcium exchanger protein V060002_00402 PF00005 ABC transporter V060002_00403 PF02405 Permease MlaE V060002_00404 PF02470 MlaD protein V060002_00405 PF05494 MlaC protein V060002_00407 PF01722 BolA-like protein V060002_00408 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V060002_00409 PF01553 Acyltransferase V060002_00410 PF01042 Endoribonuclease L-PSP V060002_00411 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain V060002_00411 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain V060002_00412 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V060002_00412 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V060002_00413 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V060002_00413 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V060002_00414 PF13638 PIN domain V060002_00414 PF02562 PhoH-like protein V060002_00415 PF00271 Helicase conserved C-terminal domain V060002_00415 PF18339 RapA N-terminal Tudor like domain 1 V060002_00415 PF12137 RNA polymerase recycling family C-terminal V060002_00415 PF00176 SNF2 family N-terminal domain V060002_00415 PF18337 RapA N-terminal Tudor like domain V060002_00416 PF00849 RNA pseudouridylate synthase V060002_00417 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V060002_00417 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V060002_00418 PF10458 Valyl tRNA synthetase tRNA binding arm V060002_00418 PF00133 tRNA synthetases class I (I, L, M and V) V060002_00418 PF08264 Anticodon-binding domain of tRNA V060002_00419 PF04364 DNA polymerase III chi subunit, HolC V060002_00420 PF02789 Cytosol aminopeptidase family, N-terminal domain V060002_00420 PF00883 Cytosol aminopeptidase family, catalytic domain V060002_00421 PF03739 Lipopolysaccharide export system permease LptF/LptG V060002_00422 PF03739 Lipopolysaccharide export system permease LptF/LptG V060002_00425 PF00072 Response regulator receiver domain V060002_00434 PF00694 Aconitase C-terminal domain V060002_00435 PF00330 Aconitase family (aconitate hydratase) V060002_00436 PF00180 Isocitrate/isopropylmalate dehydrogenase V060002_00437 PF00682 HMGL-like V060002_00437 PF08502 LeuA allosteric (dimerisation) domain V060002_00439 PF01569 PAP2 superfamily V060002_00441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00441 PF03466 LysR substrate binding domain V060002_00442 PF00501 AMP-binding enzyme V060002_00443 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V060002_00443 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V060002_00443 PF00205 Thiamine pyrophosphate enzyme, central domain V060002_00444 PF10369 Small subunit of acetolactate synthase V060002_00445 PF01842 ACT domain V060002_00445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V060002_00445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V060002_00446 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) V060002_00447 PF01812 5-formyltetrahydrofolate cyclo-ligase family V060002_00448 PF05164 Cell division protein ZapA V060002_00449 PF03695 Uncharacterised protein family (UPF0149) V060002_00450 PF01494 FAD binding domain V060002_00451 PF01494 FAD binding domain V060002_00454 PF03937 Flavinator of succinate dehydrogenase V060002_00456 PF00890 FAD binding domain V060002_00456 PF02910 Fumarate reductase flavoprotein C-term V060002_00457 PF08281 Sigma-70, region 4 V060002_00457 PF04542 Sigma-70 region 2 V060002_00458 PF03872 Anti sigma-E protein RseA, N-terminal domain V060002_00458 PF03873 Anti sigma-E protein RseA, C-terminal domain V060002_00459 PF17188 MucB/RseB C-terminal domain V060002_00459 PF03888 MucB/RseB N-terminal domain V060002_00461 PF06421 GTP-binding protein LepA C-terminus V060002_00461 PF00679 Elongation factor G C-terminus V060002_00461 PF00009 Elongation factor Tu GTP binding domain V060002_00461 PF03144 Elongation factor Tu domain 2 V060002_00462 PF10502 Signal peptidase, peptidase S26 V060002_00463 PF00035 Double-stranded RNA binding motif V060002_00463 PF14622 Ribonuclease-III-like V060002_00464 PF07650 KH domain V060002_00464 PF01926 50S ribosome-binding GTPase V060002_00465 PF11967 Recombination protein O N terminal V060002_00465 PF02565 Recombination protein O C terminal V060002_00466 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ V060002_00467 PF01648 4'-phosphopantetheinyl transferase superfamily V060002_00470 PF00990 Diguanylate cyclase, GGDEF domain V060002_00470 PF00563 EAL domain V060002_00471 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V060002_00471 PF00072 Response regulator receiver domain V060002_00471 PF01627 Hpt domain V060002_00471 PF00512 His Kinase A (phospho-acceptor) domain V060002_00471 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00471 PF00672 HAMP domain V060002_00472 PF01938 TRAM domain V060002_00472 PF05958 tRNA (Uracil-5-)-methyltransferase V060002_00473 PF02824 TGS domain V060002_00473 PF04607 Region found in RelA / SpoT proteins V060002_00473 PF13291 ACT domain V060002_00474 PF03819 MazG nucleotide pyrophosphohydrolase domain V060002_00475 PF06418 CTP synthase N-terminus V060002_00475 PF00117 Glutamine amidotransferase class-I V060002_00476 PF00113 Enolase, C-terminal TIM barrel domain V060002_00476 PF03952 Enolase, N-terminal domain V060002_00477 PF01966 HD domain V060002_00477 PF01743 Poly A polymerase head domain V060002_00477 PF12627 Probable RNA and SrmB- binding site of polymerase A V060002_00478 PF13401 AAA domain V060002_00478 PF01471 Putative peptidoglycan binding domain V060002_00480 PF08239 Bacterial SH3 domain V060002_00481 PF01384 Phosphate transporter family V060002_00482 PF01865 Protein of unknown function DUF47 V060002_00483 PF01928 CYTH domain V060002_00485 PF00672 HAMP domain V060002_00485 PF02743 Cache domain V060002_00485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_00486 PF03710 Glutamate-ammonia ligase adenylyltransferase V060002_00486 PF08335 GlnD PII-uridylyltransferase V060002_00487 PF03710 Glutamate-ammonia ligase adenylyltransferase V060002_00487 PF08335 GlnD PII-uridylyltransferase V060002_00488 PF03710 Glutamate-ammonia ligase adenylyltransferase V060002_00488 PF08335 GlnD PII-uridylyltransferase V060002_00489 PF03710 Glutamate-ammonia ligase adenylyltransferase V060002_00489 PF08335 GlnD PII-uridylyltransferase V060002_00490 PF03710 Glutamate-ammonia ligase adenylyltransferase V060002_00490 PF08335 GlnD PII-uridylyltransferase V060002_00491 PF03819 MazG nucleotide pyrophosphohydrolase domain V060002_00493 PF06418 CTP synthase N-terminus V060002_00493 PF00117 Glutamine amidotransferase class-I V060002_00494 PF00117 Glutamine amidotransferase class-I V060002_00494 PF06418 CTP synthase N-terminus V060002_00495 PF03952 Enolase, N-terminal domain V060002_00495 PF00113 Enolase, C-terminal TIM barrel domain V060002_00496 PF01966 HD domain V060002_00496 PF01743 Poly A polymerase head domain V060002_00496 PF12627 Probable RNA and SrmB- binding site of polymerase A V060002_00497 PF13401 AAA domain V060002_00497 PF01471 Putative peptidoglycan binding domain V060002_00499 PF08239 Bacterial SH3 domain V060002_00500 PF01384 Phosphate transporter family V060002_00501 PF01865 Protein of unknown function DUF47 V060002_00502 PF01928 CYTH domain V060002_00504 PF00672 HAMP domain V060002_00504 PF02743 Cache domain V060002_00504 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_00505 PF03710 Glutamate-ammonia ligase adenylyltransferase V060002_00505 PF08335 GlnD PII-uridylyltransferase V060002_00506 PF01467 Cytidylyltransferase-like V060002_00506 PF00294 pfkB family carbohydrate kinase V060002_00507 PF02321 Outer membrane efflux protein V060002_00508 PF00293 NUDIX domain V060002_00509 PF06853 Protein of unknown function (DUF1249) V060002_00510 PF00149 Calcineurin-like phosphoesterase V060002_00511 PF05728 Uncharacterised protein family (UPF0227) V060002_00512 PF01751 Toprim domain V060002_00512 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00512 PF00986 DNA gyrase B subunit, carboxyl terminus V060002_00512 PF00204 DNA gyrase B V060002_00513 PF03989 DNA gyrase C-terminal domain, beta-propeller V060002_00513 PF00521 DNA gyrase/topoisomerase IV, subunit A V060002_00514 PF03884 DNA gyrase inhibitor YacG V060002_00515 PF07072 Cell division protein V060002_00516 PF01121 Dephospho-CoA kinase V060002_00517 PF01478 Type IV leader peptidase family V060002_00517 PF06750 Bacterial Peptidase A24 N-terminal domain V060002_00518 PF00482 Type II secretion system (T2SS), protein F V060002_00519 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain V060002_00519 PF00437 Type II/IV secretion system protein V060002_00520 PF00114 Pilin (bacterial filament) V060002_00520 PF07963 Prokaryotic N-terminal methylation motif V060002_00521 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain V060002_00521 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain V060002_00522 PF01510 N-acetylmuramoyl-L-alanine amidase V060002_00523 PF00258 Flavodoxin V060002_00524 PF02899 Phage integrase, N-terminal SAM-like domain V060002_00524 PF00589 Phage integrase family V060002_00525 PF10411 Disulfide bond isomerase protein N-terminus V060002_00525 PF13098 Thioredoxin-like domain V060002_00526 PF01368 DHH family V060002_00526 PF17768 RecJ OB domain V060002_00526 PF02272 DHHA1 domain V060002_00527 PF00149 Calcineurin-like phosphoesterase V060002_00527 PF02872 5'-nucleotidase, C-terminal domain V060002_00528 PF00392 Bacterial regulatory proteins, gntR family V060002_00528 PF07729 FCD domain V060002_00529 PF00456 Transketolase, thiamine diphosphate binding domain V060002_00529 PF17831 Pyruvate dehydrogenase E1 component middle domain V060002_00530 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V060002_00530 PF02817 e3 binding domain V060002_00530 PF00364 Biotin-requiring enzyme V060002_00531 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V060002_00531 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_00532 PF01795 MraW methylase family V060002_00533 PF04999 Cell division protein FtsL V060002_00534 PF03717 Penicillin-binding Protein dimerisation domain V060002_00534 PF00905 Penicillin binding protein transpeptidase domain V060002_00535 PF02875 Mur ligase family, glutamate ligase domain V060002_00535 PF08245 Mur ligase middle domain V060002_00535 PF01225 Mur ligase family, catalytic domain V060002_00536 PF01225 Mur ligase family, catalytic domain V060002_00536 PF02875 Mur ligase family, glutamate ligase domain V060002_00536 PF08245 Mur ligase middle domain V060002_00537 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 V060002_00537 PF00953 Glycosyl transferase family 4 V060002_00538 PF02875 Mur ligase family, glutamate ligase domain V060002_00538 PF08245 Mur ligase middle domain V060002_00539 PF01098 Cell cycle protein V060002_00540 PF04101 Glycosyltransferase family 28 C-terminal domain V060002_00540 PF03033 Glycosyltransferase family 28 N-terminal domain V060002_00541 PF08245 Mur ligase middle domain V060002_00541 PF01225 Mur ligase family, catalytic domain V060002_00541 PF02875 Mur ligase family, glutamate ligase domain V060002_00542 PF08478 POTRA domain, FtsQ-type V060002_00542 PF03799 Cell division protein FtsQ V060002_00543 PF02491 SHS2 domain inserted in FTSA V060002_00544 PF00091 Tubulin/FtsZ family, GTPase domain V060002_00544 PF12327 FtsZ family, C-terminal domain V060002_00545 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase V060002_00547 PF07517 SecA DEAD-like domain V060002_00547 PF01043 SecA preprotein cross-linking domain V060002_00547 PF07516 SecA Wing and Scaffold domain V060002_00547 PF02810 SEC-C motif V060002_00548 PF00293 NUDIX domain V060002_00549 PF05173 Dihydrodipicolinate reductase, C-terminus V060002_00549 PF01113 Dihydrodipicolinate reductase, N-terminus V060002_00550 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain V060002_00550 PF00117 Glutamine amidotransferase class-I V060002_00551 PF02142 MGS-like domain V060002_00551 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain V060002_00551 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V060002_00555 PF00005 ABC transporter V060002_00556 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) V060002_00557 PF01925 Sulfite exporter TauE/SafE V060002_00558 PF03466 LysR substrate binding domain V060002_00558 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00559 PF03458 UPF0126 domain V060002_00560 PF01497 Periplasmic binding protein V060002_00562 PF01048 Phosphorylase superfamily V060002_00564 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_00564 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V060002_00565 PF04898 Glutamate synthase central domain V060002_00565 PF01645 Conserved region in glutamate synthase V060002_00565 PF01493 GXGXG motif V060002_00565 PF00310 Glutamine amidotransferases class-II V060002_00566 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_00566 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V060002_00567 PF00310 Glutamine amidotransferases class-II V060002_00567 PF01493 GXGXG motif V060002_00567 PF01645 Conserved region in glutamate synthase V060002_00567 PF04898 Glutamate synthase central domain V060002_00568 PF04055 Radical SAM superfamily V060002_00568 PF16199 Radical_SAM C-terminal domain V060002_00569 PF00563 EAL domain V060002_00569 PF01590 GAF domain V060002_00569 PF00990 Diguanylate cyclase, GGDEF domain V060002_00569 PF00360 Phytochrome region V060002_00570 PF01627 Hpt domain V060002_00570 PF00512 His Kinase A (phospho-acceptor) domain V060002_00570 PF00989 PAS fold V060002_00570 PF00072 Response regulator receiver domain V060002_00570 PF18415 Histidine kinase receptor ArcB trans-membrane domain V060002_00570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00571 PF00072 Response regulator receiver domain V060002_00571 PF00486 Transcriptional regulatory protein, C terminal V060002_00573 PF03737 Aldolase/RraA V060002_00575 PF01842 ACT domain V060002_00575 PF03447 Homoserine dehydrogenase, NAD binding domain V060002_00575 PF00742 Homoserine dehydrogenase V060002_00575 PF13840 ACT domain V060002_00575 PF00696 Amino acid kinase family V060002_00576 PF08544 GHMP kinases C terminal V060002_00576 PF00288 GHMP kinases N terminal domain V060002_00577 PF00291 Pyridoxal-phosphate dependent enzyme V060002_00577 PF14821 Threonine synthase N terminus V060002_00578 PF01228 Glycine radical V060002_00579 PF01261 Xylose isomerase-like TIM barrel V060002_00580 PF03167 Uracil DNA glycosylase superfamily V060002_00583 PF01235 Sodium:alanine symporter family V060002_00584 PF03883 Peroxide stress protein YaaA V060002_00586 PF01026 TatD related DNase V060002_00587 PF01773 Na+ dependent nucleoside transporter N-terminus V060002_00587 PF07662 Na+ dependent nucleoside transporter C-terminus V060002_00587 PF07670 Nucleoside recognition V060002_00588 PF01791 DeoC/LacD family aldolase V060002_00589 PF00591 Glycosyl transferase family, a/b domain V060002_00589 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain V060002_00589 PF02885 Glycosyl transferase family, helical bundle domain V060002_00590 PF01676 Metalloenzyme superfamily V060002_00591 PF01048 Phosphorylase superfamily V060002_00593 PF18429 Domain of unknown function (DUF5609) V060002_00595 PF18073 Rubredoxin metal binding domain V060002_00596 PF03764 Elongation factor G, domain IV V060002_00596 PF00009 Elongation factor Tu GTP binding domain V060002_00596 PF03144 Elongation factor Tu domain 2 V060002_00596 PF00679 Elongation factor G C-terminus V060002_00596 PF14492 Elongation Factor G, domain II V060002_00597 PF00501 AMP-binding enzyme V060002_00598 PF00072 Response regulator receiver domain V060002_00600 PF02929 Beta galactosidase small chain V060002_00600 PF02837 Glycosyl hydrolases family 2, sugar binding domain V060002_00600 PF02836 Glycosyl hydrolases family 2, TIM barrel domain V060002_00600 PF16353 Domain of unknown function(DUF4981) V060002_00600 PF00703 Glycosyl hydrolases family 2 V060002_00601 PF00356 Bacterial regulatory proteins, lacI family V060002_00602 PF01588 Putative tRNA binding domain V060002_00604 PF01544 CorA-like Mg2+ transporter protein V060002_00605 PF08443 RimK-like ATP-grasp domain V060002_00605 PF18030 RimK PreATP-grasp domain V060002_00605 PF02080 TrkA-C domain V060002_00607 PF00583 Acetyltransferase (GNAT) family V060002_00609 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle V060002_00609 PF14602 Hexapeptide repeat of succinyl-transferase V060002_00610 PF07130 YebG protein V060002_00613 PF17946 RecC C-terminal domain V060002_00614 PF13361 UvrD-like helicase C-terminal domain V060002_00614 PF00580 UvrD/REP helicase N-terminal domain V060002_00614 PF12705 PD-(D/E)XK nuclease superfamily V060002_00615 PF13538 UvrD-like helicase C-terminal domain V060002_00617 PF00696 Amino acid kinase family V060002_00617 PF00583 Acetyltransferase (GNAT) family V060002_00619 PF06725 3D domain V060002_00619 PF03562 MltA specific insert domain V060002_00620 PF00899 ThiF family V060002_00621 PF02657 Fe-S metabolism associated domain V060002_00622 PF00266 Aminotransferase class-V V060002_00623 PF01965 DJ-1/PfpI family V060002_00624 PF02558 Ketopantoate reductase PanE/ApbA V060002_00624 PF08546 Ketopantoate reductase PanE/ApbA C terminal V060002_00625 PF03502 Nucleoside-specific channel-forming protein, Tsx V060002_00627 PF04545 Sigma-70, region 4 V060002_00627 PF04542 Sigma-70 region 2 V060002_00629 PF07690 Major Facilitator Superfamily V060002_00630 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V060002_00632 PF05175 Methyltransferase small domain V060002_00633 PF01722 BolA-like protein V060002_00634 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) V060002_00634 PF11973 NQRA C-terminal domain V060002_00635 PF03116 NQR2, RnfD, RnfE family V060002_00636 PF04205 FMN-binding domain V060002_00637 PF02508 Rnf-Nqr subunit, membrane protein V060002_00638 PF02508 Rnf-Nqr subunit, membrane protein V060002_00639 PF00175 Oxidoreductase NAD-binding domain V060002_00639 PF00111 2Fe-2S iron-sulfur cluster binding domain V060002_00639 PF00970 Oxidoreductase FAD-binding domain V060002_00640 PF02424 ApbE family V060002_00642 PF11798 IMS family HHH motif V060002_00642 PF00817 impB/mucB/samB family V060002_00645 PF17158 Membrane-associated sensor, integral membrane domain V060002_00645 PF00990 Diguanylate cyclase, GGDEF domain V060002_00646 PF00209 Sodium:neurotransmitter symporter family V060002_00648 PF08443 RimK-like ATP-grasp domain V060002_00648 PF18030 RimK PreATP-grasp domain V060002_00649 PF18030 RimK PreATP-grasp domain V060002_00649 PF08443 RimK-like ATP-grasp domain V060002_00650 PF01546 Peptidase family M20/M25/M40 V060002_00650 PF07687 Peptidase dimerisation domain V060002_00651 PF00860 Permease family V060002_00652 PF00156 Phosphoribosyl transferase domain V060002_00654 PF07417 Sigma factor-binding transcriptional regulator Crl V060002_00655 PF01472 PUA domain V060002_00655 PF00696 Amino acid kinase family V060002_00656 PF00171 Aldehyde dehydrogenase family V060002_00657 PF03477 ATP cone domain V060002_00658 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V060002_00658 PF01872 RibD C-terminal domain V060002_00659 PF00677 Lumazine binding domain V060002_00660 PF00925 GTP cyclohydrolase II V060002_00660 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V060002_00661 PF00885 6,7-dimethyl-8-ribityllumazine synthase V060002_00662 PF01029 NusB family V060002_00663 PF00586 AIR synthase related protein, N-terminal domain V060002_00663 PF02769 AIR synthase related protein, C-terminal domain V060002_00664 PF04608 Phosphatidylglycerophosphatase A V060002_00665 PF11944 Protein of unknown function (DUF3461) V060002_00666 PF01909 Nucleotidyltransferase domain V060002_00666 PF08335 GlnD PII-uridylyltransferase V060002_00666 PF01966 HD domain V060002_00667 PF00557 Metallopeptidase family M24 V060002_00668 PF00318 Ribosomal protein S2 V060002_00669 PF00889 Elongation factor TS V060002_00670 PF00696 Amino acid kinase family V060002_00671 PF01765 Ribosome recycling factor V060002_00672 PF01255 Putative undecaprenyl diphosphate synthase V060002_00674 PF13288 DXP reductoisomerase C-terminal domain V060002_00674 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain V060002_00674 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase V060002_00675 PF02163 Peptidase family M50 V060002_00675 PF17820 PDZ domain V060002_00676 PF01103 Surface antigen V060002_00676 PF07244 Surface antigen variable number repeat V060002_00677 PF03938 Outer membrane protein (OmpH-like) V060002_00678 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD V060002_00678 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_00679 PF07977 FabA-like domain V060002_00680 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_00680 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 V060002_00681 PF02684 Lipid-A-disaccharide synthetase V060002_00682 PF01351 Ribonuclease HII V060002_00683 PF02811 PHP domain V060002_00683 PF01336 OB-fold nucleic acid binding domain V060002_00683 PF14579 Helix-hairpin-helix motif V060002_00683 PF07733 Bacterial DNA polymerase III alpha NTPase domain V060002_00683 PF17657 Bacterial DNA polymerase III alpha subunit finger domain V060002_00684 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit V060002_00685 PF01171 PP-loop family V060002_00685 PF09179 TilS substrate binding domain V060002_00685 PF11734 TilS substrate C-terminal domain V060002_00686 PF00034 Cytochrome c V060002_00687 PF05870 Phenolic acid decarboxylase (PAD) V060002_00688 PF00543 Nitrogen regulatory protein P-II V060002_00689 PF03372 Endonuclease/Exonuclease/phosphatase family V060002_00690 PF01476 LysM domain V060002_00690 PF01464 Transglycosylase SLT domain V060002_00691 PF16123 Hydroxyacylglutathione hydrolase C-terminus V060002_00691 PF00753 Metallo-beta-lactamase superfamily V060002_00692 PF08241 Methyltransferase domain V060002_00693 PF00075 RNase H V060002_00694 PF00929 Exonuclease V060002_00696 PF02770 Acyl-CoA dehydrogenase, middle domain V060002_00696 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V060002_00696 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V060002_00696 PF09317 Domain of unknown function (DUF1974) V060002_00697 PF13580 SIS domain V060002_00698 PF13230 Glutamine amidotransferases class-II V060002_00699 PF00551 Formyl transferase V060002_00700 PF00586 AIR synthase related protein, N-terminal domain V060002_00700 PF02769 AIR synthase related protein, C-terminal domain V060002_00703 PF00990 Diguanylate cyclase, GGDEF domain V060002_00703 PF08448 PAS fold V060002_00704 PF00849 RNA pseudouridylate synthase V060002_00704 PF01479 S4 domain V060002_00705 PF01713 Smr domain V060002_00708 PF01963 TraB family V060002_00709 PF02838 Glycosyl hydrolase family 20, domain 2 V060002_00709 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain V060002_00709 PF03173 Putative carbohydrate binding domain V060002_00709 PF00728 Glycosyl hydrolase family 20, catalytic domain V060002_00711 PF00403 Heavy-metal-associated domain V060002_00712 PF00749 tRNA synthetases class I (E and Q), catalytic domain V060002_00713 PF00691 OmpA family V060002_00713 PF01389 OmpA-like transmembrane domain V060002_00715 PF07715 TonB-dependent Receptor Plug Domain V060002_00716 PF04954 Siderophore-interacting protein V060002_00716 PF08021 Siderophore-interacting FAD-binding domain V060002_00717 PF08242 Methyltransferase domain V060002_00717 PF00668 Condensation domain V060002_00717 PF00550 Phosphopantetheine attachment site V060002_00717 PF00501 AMP-binding enzyme V060002_00724 PF01584 CheW-like domain V060002_00724 PF00072 Response regulator receiver domain V060002_00725 PF03705 CheR methyltransferase, all-alpha domain V060002_00725 PF01739 CheR methyltransferase, SAM binding domain V060002_00726 PF00460 Flagella basal body rod protein V060002_00727 PF00460 Flagella basal body rod protein V060002_00727 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V060002_00728 PF03963 Flagellar hook capping protein - N-terminal region V060002_00728 PF13860 FlgD Ig-like domain V060002_00728 PF13861 FlgD Tudor-like domain V060002_00729 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V060002_00729 PF00460 Flagella basal body rod protein V060002_00729 PF07559 Flagellar basal body protein FlaE V060002_00730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V060002_00730 PF00460 Flagella basal body rod protein V060002_00731 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V060002_00731 PF00460 Flagella basal body rod protein V060002_00732 PF02107 Flagellar L-ring protein V060002_00733 PF02119 Flagellar P-ring protein V060002_00734 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase V060002_00734 PF10135 Rod binding protein V060002_00735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V060002_00735 PF07196 Flagellin hook IN motif V060002_00737 PF00700 Bacterial flagellin C-terminal helical region V060002_00737 PF07196 Flagellin hook IN motif V060002_00737 PF00669 Bacterial flagellin N-terminal helical region V060002_00738 PF00669 Bacterial flagellin N-terminal helical region V060002_00738 PF07196 Flagellin hook IN motif V060002_00738 PF00700 Bacterial flagellin C-terminal helical region V060002_00755 PF01926 50S ribosome-binding GTPase V060002_00755 PF06071 Protein of unknown function (DUF933) V060002_00756 PF01195 Peptidyl-tRNA hydrolase V060002_00757 PF14572 Phosphoribosyl synthetase-associated domain V060002_00757 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase V060002_00758 PF08544 GHMP kinases C terminal V060002_00758 PF00288 GHMP kinases N terminal domain V060002_00759 PF03550 Outer membrane lipoprotein LolB V060002_00760 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain V060002_00760 PF01488 Shikimate / quinate 5-dehydrogenase V060002_00760 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain V060002_00761 PF03462 PCRF domain V060002_00761 PF00472 RF-1 domain V060002_00762 PF17827 PrmC N-terminal domain V060002_00762 PF13847 Methyltransferase domain V060002_00763 PF04247 Invasion gene expression up-regulator, SirB V060002_00764 PF13369 Transglutaminase-like superfamily V060002_00765 PF00793 DAHP synthetase I family V060002_00766 PF00149 Calcineurin-like phosphoesterase V060002_00766 PF02872 5'-nucleotidase, C-terminal domain V060002_00767 PF04073 Aminoacyl-tRNA editing domain V060002_00768 PF00860 Permease family V060002_00771 PF03358 NADPH-dependent FMN reductase V060002_00772 PF03960 ArsC family V060002_00773 PF01435 Peptidase family M48 V060002_00773 PF13181 Tetratricopeptide repeat V060002_00775 PF01594 AI-2E family transporter V060002_00776 PF02743 Cache domain V060002_00776 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_00776 PF00672 HAMP domain V060002_00777 PF00578 AhpC/TSA family V060002_00779 PF00701 Dihydrodipicolinate synthetase family V060002_00780 PF06804 NlpB/DapX lipoprotein V060002_00782 PF02557 D-alanyl-D-alanine carboxypeptidase V060002_00783 PF01546 Peptidase family M20/M25/M40 V060002_00783 PF07687 Peptidase dimerisation domain V060002_00784 PF03960 ArsC family V060002_00787 PF11143 Protein of unknown function (DUF2919) V060002_00788 PF04261 Dyp-type peroxidase family V060002_00789 PF00700 Bacterial flagellin C-terminal helical region V060002_00789 PF00669 Bacterial flagellin N-terminal helical region V060002_00789 PF07196 Flagellin hook IN motif V060002_00790 PF07196 Flagellin hook IN motif V060002_00790 PF00700 Bacterial flagellin C-terminal helical region V060002_00790 PF00669 Bacterial flagellin N-terminal helical region V060002_00791 PF00669 Bacterial flagellin N-terminal helical region V060002_00791 PF07196 Flagellin hook IN motif V060002_00791 PF00700 Bacterial flagellin C-terminal helical region V060002_00792 PF03646 FlaG protein V060002_00793 PF02465 Flagellar hook-associated protein 2 N-terminus V060002_00793 PF07195 Flagellar hook-associated protein 2 C-terminus V060002_00793 PF07196 Flagellin hook IN motif V060002_00795 PF02561 Flagellar protein FliS V060002_00796 PF02954 Bacterial regulatory protein, Fis family V060002_00796 PF00072 Response regulator receiver domain V060002_00796 PF00158 Sigma-54 interaction domain V060002_00797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00797 PF00512 His Kinase A (phospho-acceptor) domain V060002_00797 PF00989 PAS fold V060002_00797 PF13493 Domain of unknown function (DUF4118) V060002_00797 PF13426 PAS domain V060002_00797 PF08447 PAS fold V060002_00798 PF00072 Response regulator receiver domain V060002_00798 PF00158 Sigma-54 interaction domain V060002_00798 PF02954 Bacterial regulatory protein, Fis family V060002_00799 PF02049 Flagellar hook-basal body complex protein FliE V060002_00800 PF01514 Secretory protein of YscJ/FliF family V060002_00800 PF08345 Flagellar M-ring protein C-terminal V060002_00801 PF14841 FliG middle domain V060002_00801 PF14842 FliG N-terminal domain V060002_00801 PF01706 FliG C-terminal domain V060002_00802 PF02108 Flagellar assembly protein FliH V060002_00803 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V060002_00803 PF18269 T3SS EscN ATPase C-terminal domain V060002_00806 PF03748 Flagellar basal body-associated protein FliL V060002_00807 PF02154 Flagellar motor switch protein FliM V060002_00807 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term V060002_00808 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term V060002_00809 PF04347 Flagellar biosynthesis protein, FliO V060002_00810 PF00813 FliP family V060002_00811 PF01313 Bacterial export proteins, family 3 V060002_00812 PF01311 Bacterial export proteins, family 1 V060002_00813 PF01312 FlhB HrpN YscU SpaS Family V060002_00814 PF01713 Smr domain V060002_00815 PF05175 Methyltransferase small domain V060002_00816 PF01264 Chorismate synthase V060002_00817 PF03458 UPF0126 domain V060002_00818 PF04315 Elongation factor P hydroxylase V060002_00819 PF08891 YfcL protein V060002_00820 PF03358 NADPH-dependent FMN reductase V060002_00821 PF05430 S-adenosyl-L-methionine-dependent methyltransferase V060002_00821 PF01266 FAD dependent oxidoreductase V060002_00822 PF00109 Beta-ketoacyl synthase, N-terminal domain V060002_00822 PF02801 Beta-ketoacyl synthase, C-terminal domain V060002_00823 PF11890 Domain of unknown function (DUF3410) V060002_00823 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V060002_00823 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V060002_00824 PF02774 Semialdehyde dehydrogenase, dimerisation domain V060002_00824 PF01118 Semialdehyde dehydrogenase, NAD binding domain V060002_00825 PF01475 Ferric uptake regulator family V060002_00827 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00827 PF03466 LysR substrate binding domain V060002_00828 PF03788 LrgA family V060002_00829 PF04172 LrgB-like family V060002_00830 PF00258 Flavodoxin V060002_00832 PF12697 Alpha/beta hydrolase family V060002_00833 PF03925 SeqA protein C-terminal domain V060002_00833 PF17206 SeqA protein N-terminal domain V060002_00834 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V060002_00834 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V060002_00834 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V060002_00834 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V060002_00836 PF01784 NIF3 (NGG1p interacting factor 3) V060002_00837 PF00285 Citrate synthase, C-terminal domain V060002_00838 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit V060002_00839 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit V060002_00840 PF00890 FAD binding domain V060002_00840 PF02910 Fumarate reductase flavoprotein C-term V060002_00841 PF13085 2Fe-2S iron-sulfur cluster binding domain V060002_00842 PF16870 2-oxoglutarate dehydrogenase C-terminal V060002_00842 PF00676 Dehydrogenase E1 component V060002_00842 PF16078 2-oxoglutarate dehydrogenase N-terminus V060002_00842 PF02779 Transketolase, pyrimidine binding domain V060002_00843 PF02817 e3 binding domain V060002_00843 PF00364 Biotin-requiring enzyme V060002_00843 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V060002_00844 PF00549 CoA-ligase V060002_00844 PF08442 ATP-grasp domain V060002_00845 PF02629 CoA binding domain V060002_00845 PF00549 CoA-ligase V060002_00846 PF00950 ABC 3 transport family V060002_00847 PF00005 ABC transporter V060002_00848 PF01297 Zinc-uptake complex component A periplasmic V060002_00849 PF02311 AraC-like ligand binding domain V060002_00849 PF12833 Helix-turn-helix domain V060002_00850 PF04023 FeoA domain V060002_00851 PF02421 Ferrous iron transport protein B V060002_00851 PF07664 Ferrous iron transport protein B C terminus V060002_00851 PF07670 Nucleoside recognition V060002_00854 PF00750 tRNA synthetases class I (R) V060002_00854 PF05746 DALR anticodon binding domain V060002_00854 PF03485 Arginyl tRNA synthetase N terminal domain V060002_00856 PF00675 Insulinase (Peptidase family M16) V060002_00856 PF05193 Peptidase M16 inactive domain V060002_00857 PF00300 Histidine phosphatase superfamily (branch 1) V060002_00858 PF00771 FHIPEP family V060002_00859 PF00448 SRP54-type protein, GTPase domain V060002_00860 PF10609 NUBPL iron-transfer P-loop NTPase V060002_00861 PF04539 Sigma-70 region 3 V060002_00861 PF04545 Sigma-70, region 4 V060002_00861 PF04542 Sigma-70 region 2 V060002_00862 PF00072 Response regulator receiver domain V060002_00863 PF04344 Chemotaxis phosphatase, CheZ V060002_00864 PF07194 P2 response regulator binding domain V060002_00864 PF02895 Signal transducing histidine kinase, homodimeric domain V060002_00864 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00864 PF01627 Hpt domain V060002_00864 PF01584 CheW-like domain V060002_00865 PF00072 Response regulator receiver domain V060002_00865 PF01339 CheB methylesterase V060002_00866 PF13614 AAA domain V060002_00868 PF01584 CheW-like domain V060002_00870 PF00005 ABC transporter V060002_00871 PF03379 CcmB protein V060002_00872 PF01578 Cytochrome C assembly protein V060002_00873 PF04995 Heme exporter protein D (CcmD) V060002_00874 PF03100 CcmE V060002_00875 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal V060002_00875 PF01578 Cytochrome C assembly protein V060002_00876 PF08534 Redoxin V060002_00877 PF03918 Cytochrome C biogenesis protein V060002_00879 PF04333 MlaA lipoprotein V060002_00882 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V060002_00882 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V060002_00883 PF00462 Glutaredoxin V060002_00884 PF01751 Toprim domain V060002_00884 PF01131 DNA topoisomerase V060002_00885 PF00850 Histone deacetylase domain V060002_00888 PF00884 Sulfatase V060002_00888 PF11893 Domain of unknown function (DUF3413) V060002_00889 PF07208 Protein of unknown function (DUF1414) V060002_00890 PF04245 37-kD nucleoid-associated bacterial protein V060002_00892 PF03553 Na+/H+ antiporter family V060002_00893 PF01118 Semialdehyde dehydrogenase, NAD binding domain V060002_00893 PF02774 Semialdehyde dehydrogenase, dimerisation domain V060002_00894 PF01914 MarC family integral membrane protein V060002_00895 PF00171 Aldehyde dehydrogenase family V060002_00895 PF00465 Iron-containing alcohol dehydrogenase V060002_00897 PF01740 STAS domain V060002_00897 PF00916 Sulfate permease family V060002_00898 PF10150 Ribonuclease E/G family V060002_00898 PF00575 S1 RNA binding domain V060002_00898 PF12111 Polyribonucleotide phosphorylase C terminal V060002_00899 PF01479 S4 domain V060002_00899 PF00849 RNA pseudouridylate synthase V060002_00900 PF02545 Maf-like protein V060002_00901 PF02620 Large ribosomal RNA subunit accumulation protein YceD V060002_00902 PF01783 Ribosomal L32p protein family V060002_00903 PF02504 Fatty acid synthesis protein V060002_00904 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V060002_00904 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V060002_00905 PF00698 Acyl transferase domain V060002_00907 PF00550 Phosphopantetheine attachment site V060002_00908 PF00109 Beta-ketoacyl synthase, N-terminal domain V060002_00908 PF02801 Beta-ketoacyl synthase, C-terminal domain V060002_00909 PF01063 Amino-transferase class IV V060002_00910 PF02618 YceG-like family V060002_00911 PF02223 Thymidylate kinase V060002_00912 PF09115 DNA polymerase III, delta subunit, C terminal V060002_00913 PF01026 TatD related DNase V060002_00914 PF02378 Phosphotransferase system, EIIC V060002_00914 PF00367 phosphotransferase system, EIIB V060002_00916 PF00209 Sodium:neurotransmitter symporter family V060002_00919 PF01734 Patatin-like phospholipase V060002_00920 PF02887 Pyruvate kinase, alpha/beta domain V060002_00920 PF00224 Pyruvate kinase, barrel domain V060002_00921 PF00480 ROK family V060002_00922 PF00072 Response regulator receiver domain V060002_00922 PF01584 CheW-like domain V060002_00925 PF13847 Methyltransferase domain V060002_00927 PF01263 Aldose 1-epimerase V060002_00928 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V060002_00928 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V060002_00929 PF01641 SelR domain V060002_00931 PF07023 Protein of unknown function (DUF1315) V060002_00932 PF00710 Asparaginase, N-terminal V060002_00932 PF17763 Glutaminase/Asparaginase C-terminal domain V060002_00933 PF01343 Peptidase family S49 V060002_00934 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_00934 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V060002_00935 PF01842 ACT domain V060002_00935 PF00551 Formyl transferase V060002_00937 PF13307 Helicase C-terminal domain V060002_00937 PF04851 Type III restriction enzyme, res subunit V060002_00938 PF00814 Glycoprotease family V060002_00941 PF00561 alpha/beta hydrolase fold V060002_00942 PF13193 AMP-binding enzyme C-terminal domain V060002_00942 PF00501 AMP-binding enzyme V060002_00943 PF00570 HRDC domain V060002_00943 PF01612 3'-5' exonuclease V060002_00947 PF01966 HD domain V060002_00947 PF13286 Phosphohydrolase-associated domain V060002_00949 PF00155 Aminotransferase class I and II V060002_00950 PF00425 chorismate binding enzyme V060002_00951 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V060002_00951 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V060002_00951 PF16582 Middle domain of thiamine pyrophosphate V060002_00952 PF12697 Alpha/beta hydrolase family V060002_00953 PF00378 Enoyl-CoA hydratase/isomerase V060002_00954 PF13378 Enolase C-terminal domain-like V060002_00955 PF13193 AMP-binding enzyme C-terminal domain V060002_00955 PF00501 AMP-binding enzyme V060002_00956 PF03594 Benzoate membrane transport protein V060002_00957 PF01381 Helix-turn-helix V060002_00957 PF07883 Cupin domain V060002_00958 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_00958 PF12729 Four helix bundle sensory module for signal transduction V060002_00958 PF00672 HAMP domain V060002_00959 PF07690 Major Facilitator Superfamily V060002_00964 PF04170 NlpE N-terminal domain V060002_00965 PF03776 Septum formation topological specificity factor MinE V060002_00966 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain V060002_00967 PF03775 Septum formation inhibitor MinC, C-terminal domain V060002_00967 PF05209 Septum formation inhibitor MinC, N-terminal domain V060002_00968 PF05166 YcgL domain V060002_00969 PF13406 Transglycosylase SLT domain V060002_00970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00970 PF03466 LysR substrate binding domain V060002_00971 PF01773 Na+ dependent nucleoside transporter N-terminus V060002_00971 PF07670 Nucleoside recognition V060002_00971 PF07662 Na+ dependent nucleoside transporter C-terminus V060002_00972 PF00704 Glycosyl hydrolases family 18 V060002_00973 PF03264 NapC/NirT cytochrome c family, N-terminal region V060002_00974 PF18364 Molybdopterin oxidoreductase N-terminal domain V060002_00974 PF01568 Molydopterin dinucleotide binding domain V060002_00974 PF00384 Molybdopterin oxidoreductase V060002_00976 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00976 PF03466 LysR substrate binding domain V060002_00978 PF01494 FAD binding domain V060002_00979 PF02668 Taurine catabolism dioxygenase TauD, TfdA family V060002_00980 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain V060002_00980 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain V060002_00989 PF03707 Bacterial signalling protein N terminal repeat V060002_00989 PF00563 EAL domain V060002_00989 PF00990 Diguanylate cyclase, GGDEF domain V060002_00989 PF13188 PAS domain V060002_00992 PF02696 Uncharacterized ACR, YdiU/UPF0061 family V060002_00993 PF03480 Bacterial extracellular solute-binding protein, family 7 V060002_00994 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component V060002_00995 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component V060002_00996 PF00158 Sigma-54 interaction domain V060002_00996 PF00072 Response regulator receiver domain V060002_00996 PF02954 Bacterial regulatory protein, Fis family V060002_00997 PF02743 Cache domain V060002_00997 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00997 PF00512 His Kinase A (phospho-acceptor) domain V060002_00998 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V060002_00998 PF05698 Bacterial trigger factor protein (TF) C-terminus V060002_00998 PF05697 Bacterial trigger factor protein (TF) V060002_00999 PF00574 Clp protease V060002_01000 PF10431 C-terminal, D2-small domain, of ClpB protein V060002_01000 PF07724 AAA domain (Cdc48 subfamily) V060002_01000 PF06689 ClpX C4-type zinc finger V060002_01001 PF05362 Lon protease (S16) C-terminal proteolytic domain V060002_01001 PF02190 ATP-dependent protease La (LON) substrate-binding domain V060002_01001 PF00004 ATPase family associated with various cellular activities (AAA) V060002_01002 PF00216 Bacterial DNA-binding protein V060002_01003 PF13145 PPIC-type PPIASE domain V060002_01005 PF02224 Cytidylate kinase V060002_01006 PF00575 S1 RNA binding domain V060002_01007 PF00216 Bacterial DNA-binding protein V060002_01008 PF06305 Lipopolysaccharide assembly protein A domain V060002_01009 PF18073 Rubredoxin metal binding domain V060002_01010 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family V060002_01011 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) V060002_01013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01013 PF03466 LysR substrate binding domain V060002_01015 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V060002_01015 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V060002_01016 PF01037 Lrp/AsnC ligand binding domain V060002_01017 PF09397 Ftsk gamma domain V060002_01017 PF01580 FtsK/SpoIIIE family V060002_01017 PF17854 FtsK alpha domain V060002_01017 PF13491 4TM region of DNA translocase FtsK/SpoIIIE V060002_01018 PF02600 Disulfide bond formation protein DsbB V060002_01019 PF06450 Bacterial Na+/H+ antiporter B (NhaB) V060002_01020 PF07840 FadR C-terminal domain V060002_01020 PF00392 Bacterial regulatory proteins, gntR family V060002_01022 PF00672 HAMP domain V060002_01022 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01023 PF01230 HIT domain V060002_01026 PF08139 Prokaryotic membrane lipoprotein lipid attachment site V060002_01026 PF13036 Peptidoglycan-synthase activator LpoB V060002_01028 PF05728 Uncharacterised protein family (UPF0227) V060002_01029 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_01031 PF12563 Hemolytic toxin N terminal V060002_01031 PF07968 Leukocidin/Hemolysin toxin family V060002_01031 PF16458 Beta-prism lectin V060002_01033 PF17757 UvrB interaction domain V060002_01033 PF00270 DEAD/DEAH box helicase V060002_01033 PF03461 TRCF domain V060002_01033 PF00271 Helicase conserved C-terminal domain V060002_01033 PF02559 CarD-like/TRCF domain V060002_01035 PF12704 MacB-like periplasmic core domain V060002_01035 PF02687 FtsX-like permease family V060002_01036 PF00005 ABC transporter V060002_01037 PF02687 FtsX-like permease family V060002_01037 PF12704 MacB-like periplasmic core domain V060002_01039 PF03772 Competence protein V060002_01039 PF13567 Domain of unknown function (DUF4131) V060002_01039 PF00753 Metallo-beta-lactamase superfamily V060002_01040 PF00005 ABC transporter V060002_01040 PF00664 ABC transporter transmembrane region V060002_01041 PF02606 Tetraacyldisaccharide-1-P 4'-kinase V060002_01042 PF03966 Trm112p-like protein V060002_01043 PF02348 Cytidylyltransferase V060002_01044 PF04293 SpoVR like protein V060002_01045 PF04285 Protein of unknown function (DUF444) V060002_01046 PF06798 PrkA serine protein kinase C-terminal domain V060002_01046 PF08298 PrkA AAA domain V060002_01047 PF03887 YfbU domain V060002_01049 PF04055 Radical SAM superfamily V060002_01050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01050 PF12729 Four helix bundle sensory module for signal transduction V060002_01050 PF00672 HAMP domain V060002_01052 PF02901 Pyruvate formate lyase-like V060002_01052 PF01228 Glycine radical V060002_01055 PF00005 ABC transporter V060002_01056 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_01057 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01058 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01059 PF03372 Endonuclease/Exonuclease/phosphatase family V060002_01060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01060 PF00672 HAMP domain V060002_01061 PF10689 Protein of unknown function (DUF2496) V060002_01062 PF07445 Primosomal replication protein priC V060002_01063 PF01925 Sulfite exporter TauE/SafE V060002_01064 PF06733 DEAD_2 V060002_01064 PF13307 Helicase C-terminal domain V060002_01065 PF13609 Gram-negative porin V060002_01066 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) V060002_01067 PF02810 SEC-C motif V060002_01068 PF00563 EAL domain V060002_01068 PF08668 HDOD domain V060002_01069 PF00149 Calcineurin-like phosphoesterase V060002_01070 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V060002_01071 PF01406 tRNA synthetases class I (C) catalytic domain V060002_01071 PF09190 DALR domain V060002_01072 PF02075 Crossover junction endodeoxyribonuclease RuvC V060002_01073 PF07499 RuvA, C-terminal domain V060002_01073 PF01330 RuvA N terminal domain V060002_01074 PF05496 Holliday junction DNA helicase RuvB P-loop domain V060002_01074 PF05491 RuvB C-terminal winged helix domain V060002_01074 PF17864 RuvB AAA lid domain V060002_01076 PF01654 Cytochrome bd terminal oxidase subunit I V060002_01077 PF02322 Cytochrome bd terminal oxidase subunit II V060002_01078 PF08173 Membrane bound YbgT-like protein V060002_01079 PF03061 Thioesterase superfamily V060002_01080 PF01618 MotA/TolQ/ExbB proton channel family V060002_01081 PF02472 Biopolymer transport protein ExbD/TolR V060002_01083 PF04052 TolB amino-terminal domain V060002_01083 PF07676 WD40-like Beta Propeller Repeat V060002_01084 PF00691 OmpA family V060002_01086 PF02445 Quinolinate synthetase A protein V060002_01088 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01088 PF09308 LuxQ, periplasmic V060002_01088 PF00072 Response regulator receiver domain V060002_01088 PF00512 His Kinase A (phospho-acceptor) domain V060002_01089 PF06610 L-alanine exporter V060002_01090 PF01238 Phosphomannose isomerase type I V060002_01091 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V060002_01091 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V060002_01091 PF02378 Phosphotransferase system, EIIC V060002_01092 PF12833 Helix-turn-helix domain V060002_01094 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V060002_01098 PF00171 Aldehyde dehydrogenase family V060002_01099 PF02954 Bacterial regulatory protein, Fis family V060002_01099 PF01590 GAF domain V060002_01099 PF00158 Sigma-54 interaction domain V060002_01100 PF09905 DNA-binding protein VF530 V060002_01102 PF00875 DNA photolyase V060002_01102 PF03441 FAD binding domain of DNA photolyase V060002_01117 PF00005 ABC transporter V060002_01126 PF01527 Transposase V060002_01127 PF00665 Integrase core domain V060002_01130 PF00226 DnaJ domain V060002_01130 PF00684 DnaJ central domain V060002_01130 PF01556 DnaJ C terminal domain V060002_01132 PF00563 EAL domain V060002_01132 PF00498 FHA domain V060002_01132 PF00990 Diguanylate cyclase, GGDEF domain V060002_01133 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V060002_01133 PF12241 Trans-2-enoyl-CoA reductase catalytic region V060002_01133 PF07055 Enoyl reductase FAD binding domain V060002_01134 PF13472 GDSL-like Lipase/Acylhydrolase family V060002_01135 PF00005 ABC transporter V060002_01137 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain V060002_01137 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain V060002_01139 PF02626 Carboxyltransferase domain, subdomain A and B V060002_01141 PF03746 LamB/YcsF family V060002_01142 PF16363 GDP-mannose 4,6 dehydratase V060002_01143 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01143 PF12729 Four helix bundle sensory module for signal transduction V060002_01143 PF00672 HAMP domain V060002_01144 PF03222 Tryptophan/tyrosine permease family V060002_01146 PF04336 Acyl carrier protein phosphodiesterase V060002_01147 PF00271 Helicase conserved C-terminal domain V060002_01147 PF00270 DEAD/DEAH box helicase V060002_01148 PF00440 Bacterial regulatory proteins, tetR family V060002_01148 PF08361 MAATS-type transcriptional repressor, C-terminal region V060002_01149 PF00034 Cytochrome c V060002_01150 PF01212 Beta-eliminating lyase V060002_01151 PF00293 NUDIX domain V060002_01152 PF12592 Protein of unknown function (DUF3763) V060002_01152 PF07728 AAA domain (dynein-related subfamily) V060002_01152 PF17868 AAA lid domain V060002_01153 PF05762 VWA domain containing CoxE-like protein V060002_01155 PF00005 ABC transporter V060002_01156 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_01157 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01158 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01159 PF03466 LysR substrate binding domain V060002_01164 PF07690 Major Facilitator Superfamily V060002_01165 PF00085 Thioredoxin V060002_01166 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V060002_01166 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V060002_01167 PF13183 4Fe-4S dicluster domain V060002_01167 PF02754 Cysteine-rich domain V060002_01168 PF00890 FAD binding domain V060002_01169 PF01266 FAD dependent oxidoreductase V060002_01169 PF04324 BFD-like [2Fe-2S] binding domain V060002_01170 PF00230 Major intrinsic protein V060002_01171 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V060002_01171 PF00370 FGGY family of carbohydrate kinases, N-terminal domain V060002_01174 PF04363 Protein of unknown function (DUF496) V060002_01176 PF04337 Protein of unknown function, DUF480 V060002_01177 PF01541 GIY-YIG catalytic domain V060002_01179 PF13407 Periplasmic binding protein domain V060002_01180 PF00072 Response regulator receiver domain V060002_01180 PF09308 LuxQ, periplasmic V060002_01180 PF00512 His Kinase A (phospho-acceptor) domain V060002_01180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01188 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain V060002_01188 PF07685 CobB/CobQ-like glutamine amidotransferase domain V060002_01190 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01191 PF00005 ABC transporter V060002_01191 PF03459 TOBE domain V060002_01196 PF13188 PAS domain V060002_01196 PF00072 Response regulator receiver domain V060002_01196 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01196 PF08448 PAS fold V060002_01196 PF00512 His Kinase A (phospho-acceptor) domain V060002_01197 PF12805 FUSC-like inner membrane protein yccS V060002_01198 PF12462 DNA helicase IV / RNA helicase N terminal V060002_01198 PF00580 UvrD/REP helicase N-terminal domain V060002_01198 PF13361 UvrD-like helicase C-terminal domain V060002_01201 PF01219 Prokaryotic diacylglycerol kinase V060002_01202 PF00857 Isochorismatase family V060002_01203 PF02142 MGS-like domain V060002_01204 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V060002_01205 PF00672 HAMP domain V060002_01205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01205 PF00512 His Kinase A (phospho-acceptor) domain V060002_01205 PF01627 Hpt domain V060002_01205 PF00072 Response regulator receiver domain V060002_01206 PF02887 Pyruvate kinase, alpha/beta domain V060002_01206 PF00224 Pyruvate kinase, barrel domain V060002_01207 PF07690 Major Facilitator Superfamily V060002_01210 PF02743 Cache domain V060002_01210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01210 PF00512 His Kinase A (phospho-acceptor) domain V060002_01211 PF14532 Sigma-54 interaction domain V060002_01211 PF00072 Response regulator receiver domain V060002_01211 PF02954 Bacterial regulatory protein, Fis family V060002_01213 PF00465 Iron-containing alcohol dehydrogenase V060002_01214 PF06483 Chitinase C V060002_01214 PF00704 Glycosyl hydrolases family 18 V060002_01215 PF00483 Nucleotidyl transferase V060002_01216 PF00990 Diguanylate cyclase, GGDEF domain V060002_01216 PF17158 Membrane-associated sensor, integral membrane domain V060002_01219 PF07549 SecD/SecF GG Motif V060002_01219 PF13721 SecD export protein N-terminal TM region V060002_01219 PF02355 Protein export membrane protein V060002_01220 PF07549 SecD/SecF GG Motif V060002_01220 PF02355 Protein export membrane protein V060002_01221 PF00106 short chain dehydrogenase V060002_01222 PF02803 Thiolase, C-terminal domain V060002_01222 PF00108 Thiolase, N-terminal domain V060002_01224 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus V060002_01225 PF00005 ABC transporter V060002_01225 PF08402 TOBE domain V060002_01226 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01228 PF07690 Major Facilitator Superfamily V060002_01229 PF07730 Histidine kinase V060002_01229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01229 PF05231 MASE1 V060002_01230 PF00196 Bacterial regulatory proteins, luxR family V060002_01230 PF00072 Response regulator receiver domain V060002_01231 PF01966 HD domain V060002_01233 PF03264 NapC/NirT cytochrome c family, N-terminal region V060002_01234 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) V060002_01235 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V060002_01235 PF01568 Molydopterin dinucleotide binding domain V060002_01235 PF00384 Molybdopterin oxidoreductase V060002_01237 PF13187 4Fe-4S dicluster domain V060002_01237 PF12838 4Fe-4S dicluster domain V060002_01238 PF00672 HAMP domain V060002_01238 PF07730 Histidine kinase V060002_01238 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term V060002_01238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01239 PF00072 Response regulator receiver domain V060002_01239 PF00196 Bacterial regulatory proteins, luxR family V060002_01240 PF00356 Bacterial regulatory proteins, lacI family V060002_01244 PF00474 Sodium:solute symporter family V060002_01245 PF03313 Serine dehydratase alpha chain V060002_01245 PF03315 Serine dehydratase beta chain V060002_01246 PF03606 C4-dicarboxylate anaerobic carrier V060002_01247 PF00672 HAMP domain V060002_01247 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01247 PF12729 Four helix bundle sensory module for signal transduction V060002_01248 PF13419 Haloacid dehalogenase-like hydrolase V060002_01249 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V060002_01249 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V060002_01250 PF13488 Glycine zipper V060002_01250 PF00691 OmpA family V060002_01251 PF00672 HAMP domain V060002_01251 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01252 PF16901 C-terminal domain of alpha-glycerophosphate oxidase V060002_01252 PF01266 FAD dependent oxidoreductase V060002_01253 PF00294 pfkB family carbohydrate kinase V060002_01254 PF00251 Glycosyl hydrolases family 32 N-terminal domain V060002_01254 PF08244 Glycosyl hydrolases family 32 C terminal V060002_01256 PF02378 Phosphotransferase system, EIIC V060002_01256 PF00367 phosphotransferase system, EIIB V060002_01265 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_01265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V060002_01268 PF04143 Sulphur transport V060002_01271 PF00873 AcrB/AcrD/AcrF family V060002_01272 PF00881 Nitroreductase family V060002_01273 PF03992 Antibiotic biosynthesis monooxygenase V060002_01274 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01274 PF03466 LysR substrate binding domain V060002_01276 PF06942 GlpM protein V060002_01279 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V060002_01279 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V060002_01281 PF02810 SEC-C motif V060002_01281 PF07516 SecA Wing and Scaffold domain V060002_01281 PF01043 SecA preprotein cross-linking domain V060002_01281 PF07517 SecA DEAD-like domain V060002_01284 PF02779 Transketolase, pyrimidine binding domain V060002_01284 PF02780 Transketolase, C-terminal domain V060002_01284 PF00456 Transketolase, thiamine diphosphate binding domain V060002_01285 PF00923 Transaldolase/Fructose-6-phosphate aldolase V060002_01286 PF04198 Putative sugar-binding domain V060002_01287 PF00581 Rhodanese-like domain V060002_01289 PF00899 ThiF family V060002_01290 PF00994 Probable molybdopterin binding domain V060002_01290 PF03453 MoeA N-terminal region (domain I and II) V060002_01290 PF03454 MoeA C-terminal region (domain IV) V060002_01291 PF01227 GTP cyclohydrolase I V060002_01292 PF01625 Peptide methionine sulfoxide reductase V060002_01292 PF01641 SelR domain V060002_01293 PF01268 Formate--tetrahydrofolate ligase V060002_01294 PF01741 Large-conductance mechanosensitive channel, MscL V060002_01297 PF13419 Haloacid dehalogenase-like hydrolase V060002_01298 PF01272 Transcription elongation factor, GreA/GreB, C-term V060002_01298 PF14760 Rnk N-terminus V060002_01299 PF13419 Haloacid dehalogenase-like hydrolase V060002_01301 PF00266 Aminotransferase class-V V060002_01303 PF00005 ABC transporter V060002_01304 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01305 PF00392 Bacterial regulatory proteins, gntR family V060002_01305 PF07702 UTRA domain V060002_01307 PF00854 POT family V060002_01312 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_01313 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01314 PF12911 N-terminal TM domain of oligopeptide transport permease C V060002_01314 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01315 PF00005 ABC transporter V060002_01315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_01316 PF03479 Plants and Prokaryotes Conserved (PCC) domain V060002_01316 PF12804 MobA-like NTP transferase domain V060002_01316 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_01319 PF00043 Glutathione S-transferase, C-terminal domain V060002_01319 PF02798 Glutathione S-transferase, N-terminal domain V060002_01323 PF03061 Thioesterase superfamily V060002_01325 PF12793 Sugar transport-related sRNA regulator N-term V060002_01325 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_01326 PF07715 TonB-dependent Receptor Plug Domain V060002_01326 PF00593 TonB dependent receptor V060002_01327 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01327 PF03466 LysR substrate binding domain V060002_01328 PF00583 Acetyltransferase (GNAT) family V060002_01328 PF13380 CoA binding domain V060002_01328 PF13607 Succinyl-CoA ligase like flavodoxin domain V060002_01330 PF07478 D-ala D-ala ligase C-terminus V060002_01330 PF01820 D-ala D-ala ligase N-terminus V060002_01332 PF01253 Translation initiation factor SUI1 V060002_01333 PF01376 Heat-labile enterotoxin beta chain V060002_01334 PF01375 Heat-labile enterotoxin alpha chain V060002_01335 PF05707 Zonular occludens toxin (Zot) V060002_01336 PF10734 Protein of unknown function (DUF2523) V060002_01337 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII V060002_01342 PF01381 Helix-turn-helix V060002_01343 PF01376 Heat-labile enterotoxin beta chain V060002_01344 PF01375 Heat-labile enterotoxin alpha chain V060002_01345 PF05707 Zonular occludens toxin (Zot) V060002_01346 PF10734 Protein of unknown function (DUF2523) V060002_01347 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII V060002_01352 PF01381 Helix-turn-helix V060002_01353 PF03701 Uncharacterised protein family (UPF0181) V060002_01356 PF00072 Response regulator receiver domain V060002_01356 PF00486 Transcriptional regulatory protein, C terminal V060002_01358 PF02233 NAD(P) transhydrogenase beta subunit V060002_01359 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch V060002_01359 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V060002_01359 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V060002_01362 PF00990 Diguanylate cyclase, GGDEF domain V060002_01362 PF17158 Membrane-associated sensor, integral membrane domain V060002_01366 PF00990 Diguanylate cyclase, GGDEF domain V060002_01366 PF17151 Periplasmic sensor domain V060002_01372 PF03831 PhnA domain V060002_01372 PF08274 PhnA Zinc-Ribbon V060002_01374 PF03741 Integral membrane protein TerC family V060002_01376 PF02872 5'-nucleotidase, C-terminal domain V060002_01376 PF00149 Calcineurin-like phosphoesterase V060002_01377 PF11398 Protein of unknown function (DUF2813) V060002_01378 PF06496 Protein of unknown function (DUF1097) V060002_01379 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01379 PF03466 LysR substrate binding domain V060002_01380 PF01226 Formate/nitrite transporter V060002_01381 PF04264 YceI-like domain V060002_01382 PF01292 Prokaryotic cytochrome b561 V060002_01384 PF10388 EAL-domain associated signalling protein domain V060002_01384 PF00563 EAL domain V060002_01386 PF09335 SNARE associated Golgi protein V060002_01387 PF02416 mttA/Hcf106 family V060002_01388 PF00072 Response regulator receiver domain V060002_01388 PF00486 Transcriptional regulatory protein, C terminal V060002_01389 PF13493 Domain of unknown function (DUF4118) V060002_01389 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01389 PF00512 His Kinase A (phospho-acceptor) domain V060002_01389 PF02702 Osmosensitive K+ channel His kinase sensor domain V060002_01390 PF10371 Domain of unknown function V060002_01390 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II V060002_01390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V060002_01390 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase V060002_01390 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg V060002_01391 PF02705 K+ potassium transporter V060002_01392 PF01926 50S ribosome-binding GTPase V060002_01393 PF07683 Cobalamin synthesis protein cobW C-terminal domain V060002_01393 PF02492 CobW/HypB/UreG, nucleotide-binding domain V060002_01394 PF00654 Voltage gated chloride channel V060002_01396 PF00155 Aminotransferase class I and II V060002_01397 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01397 PF00072 Response regulator receiver domain V060002_01398 PF13476 AAA domain V060002_01399 PF00149 Calcineurin-like phosphoesterase V060002_01399 PF12320 Type 5 capsule protein repressor C-terminal domain V060002_01400 PF00356 Bacterial regulatory proteins, lacI family V060002_01400 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V060002_01401 PF00381 PTS HPr component phosphorylation site V060002_01401 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V060002_01402 PF00294 pfkB family carbohydrate kinase V060002_01403 PF02378 Phosphotransferase system, EIIC V060002_01403 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V060002_01404 PF18030 RimK PreATP-grasp domain V060002_01404 PF08443 RimK-like ATP-grasp domain V060002_01405 PF00155 Aminotransferase class I and II V060002_01407 PF03477 ATP cone domain V060002_01407 PF13597 Anaerobic ribonucleoside-triphosphate reductase V060002_01409 PF00665 Integrase core domain V060002_01410 PF01527 Transposase V060002_01412 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_01422 PF01797 Transposase IS200 like V060002_01425 PF07859 alpha/beta hydrolase fold V060002_01436 PF05016 ParE toxin of type II toxin-antitoxin system, parDE V060002_01438 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_01441 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_01442 PF05598 Transposase domain (DUF772) V060002_01442 PF01609 Transposase DDE domain V060002_01445 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA V060002_01446 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system V060002_01451 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_01457 PF01965 DJ-1/PfpI family V060002_01457 PF12833 Helix-turn-helix domain V060002_01466 PF01555 DNA methylase V060002_01469 PF05016 ParE toxin of type II toxin-antitoxin system, parDE V060002_01470 PF08212 Lipocalin-like domain V060002_01474 PF02016 LD-carboxypeptidase N-terminal domain V060002_01474 PF17676 LD-carboxypeptidase C-terminal domain V060002_01475 PF01381 Helix-turn-helix V060002_01476 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB V060002_01487 PF01527 Transposase V060002_01488 PF00665 Integrase core domain V060002_01498 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH V060002_01507 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_01510 PF17676 LD-carboxypeptidase C-terminal domain V060002_01510 PF02016 LD-carboxypeptidase N-terminal domain V060002_01517 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_01519 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ V060002_01523 PF08212 Lipocalin-like domain V060002_01524 PF13302 Acetyltransferase (GNAT) domain V060002_01526 PF00293 NUDIX domain V060002_01531 PF13286 Phosphohydrolase-associated domain V060002_01531 PF01966 HD domain V060002_01535 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_01539 PF13495 Phage integrase, N-terminal SAM-like domain V060002_01539 PF00589 Phage integrase family V060002_01540 PF00453 Ribosomal protein L20 V060002_01541 PF01632 Ribosomal protein L35 V060002_01542 PF00707 Translation initiation factor IF-3, C-terminal domain V060002_01542 PF05198 Translation initiation factor IF-3, N-terminal domain V060002_01543 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V060002_01543 PF03129 Anticodon binding domain V060002_01543 PF02824 TGS domain V060002_01543 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V060002_01548 PF05598 Transposase domain (DUF772) V060002_01548 PF01609 Transposase DDE domain V060002_01550 PF01571 Aminomethyltransferase folate-binding domain V060002_01550 PF08669 Glycine cleavage T-protein C-terminal barrel domain V060002_01552 PF00464 Serine hydroxymethyltransferase V060002_01553 PF01597 Glycine cleavage H-protein V060002_01554 PF02347 Glycine cleavage system P-protein V060002_01555 PF01797 Transposase IS200 like V060002_01556 PF00194 Eukaryotic-type carbonic anhydrase V060002_01559 PF00768 D-alanyl-D-alanine carboxypeptidase V060002_01559 PF07943 Penicillin-binding protein 5, C-terminal domain V060002_01561 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01561 PF00672 HAMP domain V060002_01561 PF02743 Cache domain V060002_01562 PF07690 Major Facilitator Superfamily V060002_01570 PF13426 PAS domain V060002_01570 PF00512 His Kinase A (phospho-acceptor) domain V060002_01570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01570 PF00672 HAMP domain V060002_01570 PF14827 Double sensory domain of two-component sensor kinase V060002_01571 PF00486 Transcriptional regulatory protein, C terminal V060002_01571 PF00072 Response regulator receiver domain V060002_01575 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_01576 PF00128 Alpha amylase, catalytic domain V060002_01577 PF01292 Prokaryotic cytochrome b561 V060002_01579 PF00455 DeoR C terminal sensor domain V060002_01579 PF08220 DeoR-like helix-turn-helix domain V060002_01580 PF03611 PTS system sugar-specific permease component V060002_01581 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V060002_01582 PF00596 Class II Aldolase and Adducin N-terminal domain V060002_01584 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family V060002_01585 PF01261 Xylose isomerase-like TIM barrel V060002_01587 PF00072 Response regulator receiver domain V060002_01587 PF00486 Transcriptional regulatory protein, C terminal V060002_01588 PF00512 His Kinase A (phospho-acceptor) domain V060002_01588 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01588 PF00672 HAMP domain V060002_01591 PF00871 Acetokinase family V060002_01593 PF07715 TonB-dependent Receptor Plug Domain V060002_01593 PF00593 TonB dependent receptor V060002_01594 PF12833 Helix-turn-helix domain V060002_01595 PF00005 ABC transporter V060002_01596 PF01032 FecCD transport family V060002_01597 PF01032 FecCD transport family V060002_01601 PF05547 Immune inhibitor A peptidase M6 V060002_01601 PF00801 PKD domain V060002_01602 PF03280 Proteobacterial lipase chaperone protein V060002_01603 PF00561 alpha/beta hydrolase fold V060002_01604 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01604 PF00672 HAMP domain V060002_01604 PF12729 Four helix bundle sensory module for signal transduction V060002_01605 PF12563 Hemolytic toxin N terminal V060002_01605 PF16458 Beta-prism lectin V060002_01605 PF07968 Leukocidin/Hemolysin toxin family V060002_01606 PF00657 GDSL-like Lipase/Acylhydrolase V060002_01607 PF00990 Diguanylate cyclase, GGDEF domain V060002_01607 PF08448 PAS fold V060002_01608 PF07690 Major Facilitator Superfamily V060002_01609 PF03553 Na+/H+ antiporter family V060002_01611 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_01611 PF00512 His Kinase A (phospho-acceptor) domain V060002_01611 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01612 PF11849 Domain of unknown function (DUF3369) V060002_01614 PF01467 Cytidylyltransferase-like V060002_01615 PF02540 NAD synthase V060002_01616 PF03605 Anaerobic c4-dicarboxylate membrane transporter V060002_01617 PF00271 Helicase conserved C-terminal domain V060002_01617 PF00270 DEAD/DEAH box helicase V060002_01618 PF01797 Transposase IS200 like V060002_01622 PF00145 C-5 cytosine-specific DNA methylase V060002_01623 PF00478 IMP dehydrogenase / GMP reductase domain V060002_01625 PF07885 Ion channel V060002_01627 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V060002_01627 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V060002_01628 PF01256 Carbohydrate kinase V060002_01628 PF03853 YjeF-related protein N-terminus V060002_01630 PF00072 Response regulator receiver domain V060002_01633 PF03889 Alternative ribosome-rescue factor A V060002_01634 PF00313 'Cold-shock' DNA-binding domain V060002_01635 PF00970 Oxidoreductase FAD-binding domain V060002_01635 PF00042 Globin V060002_01635 PF00175 Oxidoreductase NAD-binding domain V060002_01636 PF00158 Sigma-54 interaction domain V060002_01636 PF01590 GAF domain V060002_01638 PF01546 Peptidase family M20/M25/M40 V060002_01638 PF07687 Peptidase dimerisation domain V060002_01639 PF07662 Na+ dependent nucleoside transporter C-terminus V060002_01639 PF01773 Na+ dependent nucleoside transporter N-terminus V060002_01639 PF07670 Nucleoside recognition V060002_01642 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01642 PF02743 Cache domain V060002_01642 PF00672 HAMP domain V060002_01643 PF07726 ATPase family associated with various cellular activities (AAA) V060002_01643 PF17863 AAA lid domain V060002_01644 PF01882 Protein of unknown function DUF58 V060002_01647 PF13519 von Willebrand factor type A domain V060002_01647 PF07584 Aerotolerance regulator N-terminal V060002_01650 PF00313 'Cold-shock' DNA-binding domain V060002_01651 PF00563 EAL domain V060002_01651 PF08448 PAS fold V060002_01651 PF00990 Diguanylate cyclase, GGDEF domain V060002_01653 PF12843 Putative quorum-sensing-regulated virulence factor V060002_01655 PF01212 Beta-eliminating lyase V060002_01656 PF03222 Tryptophan/tyrosine permease family V060002_01657 PF00582 Universal stress protein family V060002_01659 PF13244 Domain of unknown function (DUF4040) V060002_01659 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus V060002_01659 PF00361 Proton-conducting membrane transporter V060002_01659 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter V060002_01663 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) V060002_01664 PF03334 Na+/H+ antiporter subunit V060002_01666 PF01327 Polypeptide deformylase V060002_01667 PF12561 ToxR activated gene A lipoprotein domain V060002_01667 PF00041 Fibronectin type III domain V060002_01668 PF01266 FAD dependent oxidoreductase V060002_01671 PF02954 Bacterial regulatory protein, Fis family V060002_01671 PF00072 Response regulator receiver domain V060002_01671 PF00158 Sigma-54 interaction domain V060002_01672 PF02743 Cache domain V060002_01672 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01672 PF00512 His Kinase A (phospho-acceptor) domain V060002_01675 PF07690 Major Facilitator Superfamily V060002_01676 PF03009 Glycerophosphoryl diester phosphodiesterase family V060002_01678 PF01048 Phosphorylase superfamily V060002_01679 PF04973 Nicotinamide mononucleotide transporter V060002_01680 PF00356 Bacterial regulatory proteins, lacI family V060002_01681 PF00294 pfkB family carbohydrate kinase V060002_01682 PF13407 Periplasmic binding protein domain V060002_01683 PF02653 Branched-chain amino acid transport system / permease component V060002_01684 PF00005 ABC transporter V060002_01685 PF05025 RbsD / FucU transport protein family V060002_01688 PF04717 Type VI secretion system, phage-baseplate injector V060002_01688 PF16671 Actin cross-linking domain V060002_01694 PF17871 AAA lid domain V060002_01694 PF00004 ATPase family associated with various cellular activities (AAA) V060002_01694 PF10431 C-terminal, D2-small domain, of ClpB protein V060002_01694 PF07724 AAA domain (Cdc48 subfamily) V060002_01706 PF00849 RNA pseudouridylate synthase V060002_01707 PF01740 STAS domain V060002_01707 PF00916 Sulfate permease family V060002_01708 PF13419 Haloacid dehalogenase-like hydrolase V060002_01709 PF00196 Bacterial regulatory proteins, luxR family V060002_01709 PF00563 EAL domain V060002_01710 PF00581 Rhodanese-like domain V060002_01711 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V060002_01711 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V060002_01712 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family V060002_01712 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain V060002_01714 PF01447 Thermolysin metallopeptidase, catalytic domain V060002_01714 PF01483 Proprotein convertase P-domain V060002_01714 PF07504 Fungalysin/Thermolysin Propeptide Motif V060002_01714 PF02868 Thermolysin metallopeptidase, alpha-helical domain V060002_01718 PF02001 Protein of unknown function DUF134 V060002_01720 PF00375 Sodium:dicarboxylate symporter family V060002_01724 PF00376 MerR family regulatory protein V060002_01724 PF09278 MerR, DNA binding V060002_01725 PF07690 Major Facilitator Superfamily V060002_01726 PF03466 LysR substrate binding domain V060002_01726 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01728 PF13188 PAS domain V060002_01728 PF00990 Diguanylate cyclase, GGDEF domain V060002_01728 PF03707 Bacterial signalling protein N terminal repeat V060002_01728 PF00563 EAL domain V060002_01729 PF01476 LysM domain V060002_01729 PF08525 Opacity-associated protein A N-terminal motif V060002_01729 PF01551 Peptidase family M23 V060002_01731 PF00916 Sulfate permease family V060002_01731 PF01740 STAS domain V060002_01734 PF03707 Bacterial signalling protein N terminal repeat V060002_01734 PF00990 Diguanylate cyclase, GGDEF domain V060002_01734 PF00563 EAL domain V060002_01735 PF00005 ABC transporter V060002_01736 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01737 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01738 PF12849 PBP superfamily domain V060002_01739 PF00672 HAMP domain V060002_01739 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01739 PF12729 Four helix bundle sensory module for signal transduction V060002_01743 PF00593 TonB dependent receptor V060002_01743 PF07715 TonB-dependent Receptor Plug Domain V060002_01744 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V060002_01744 PF00326 Prolyl oligopeptidase family V060002_01745 PF00271 Helicase conserved C-terminal domain V060002_01745 PF00270 DEAD/DEAH box helicase V060002_01747 PF17969 L,D-transpeptidase C-terminal domain V060002_01747 PF03734 L,D-transpeptidase catalytic domain V060002_01747 PF01476 LysM domain V060002_01748 PF00875 DNA photolyase V060002_01748 PF03441 FAD binding domain of DNA photolyase V060002_01749 PF13411 MerR HTH family regulatory protein V060002_01750 PF08349 Protein of unknown function (DUF1722) V060002_01751 PF01048 Phosphorylase superfamily V060002_01754 PF00990 Diguanylate cyclase, GGDEF domain V060002_01755 PF11742 Protein of unknown function (DUF3302) V060002_01756 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V060002_01756 PF00529 HlyD membrane-fusion protein of T1SS V060002_01759 PF12945 Flagellar protein YcgR V060002_01759 PF07238 PilZ domain V060002_01760 PF03616 Sodium/glutamate symporter V060002_01763 PF02630 SCO1/SenC V060002_01765 PF00375 Sodium:dicarboxylate symporter family V060002_01766 PF01569 PAP2 superfamily V060002_01770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01770 PF00672 HAMP domain V060002_01770 PF02743 Cache domain V060002_01774 PF00704 Glycosyl hydrolases family 18 V060002_01774 PF08329 Chitinase A, N-terminal domain V060002_01775 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) V060002_01776 PF00939 Sodium:sulfate symporter transmembrane region V060002_01778 PF01757 Acyltransferase family V060002_01778 PF01168 Alanine racemase, N-terminal domain V060002_01778 PF00842 Alanine racemase, C-terminal domain V060002_01783 PF16671 Actin cross-linking domain V060002_01783 PF04717 Type VI secretion system, phage-baseplate injector V060002_01784 PF05638 Type VI secretion system effector, Hcp V060002_01785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V060002_01785 PF02806 Alpha amylase, C-terminal all-beta domain V060002_01785 PF00128 Alpha amylase, catalytic domain V060002_01786 PF02446 4-alpha-glucanotransferase V060002_01787 PF00343 Carbohydrate phosphorylase V060002_01788 PF00196 Bacterial regulatory proteins, luxR family V060002_01788 PF17874 MalT-like TPR region V060002_01789 PF10928 Protein of unknown function (DUF2810) V060002_01790 PF00672 HAMP domain V060002_01790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01790 PF17200 Single Cache domain 2 V060002_01791 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase V060002_01791 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase V060002_01792 PF01709 Transcriptional regulator V060002_01797 PF18607 ParA helix turn helix domain V060002_01797 PF13614 AAA domain V060002_01798 PF02195 ParB-like nuclease domain V060002_01798 PF08775 ParB family V060002_01799 PF13416 Bacterial extracellular solute-binding protein V060002_01800 PF13718 GNAT acetyltransferase 2 V060002_01800 PF05127 Helicase V060002_01802 PF00501 AMP-binding enzyme V060002_01806 PF00072 Response regulator receiver domain V060002_01806 PF00486 Transcriptional regulatory protein, C terminal V060002_01807 PF00512 His Kinase A (phospho-acceptor) domain V060002_01807 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01807 PF08521 Two-component sensor kinase N-terminal V060002_01808 PF00884 Sulfatase V060002_01808 PF08019 Phosphoethanolamine transferase EptA/EptB V060002_01809 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_01809 PF00005 ABC transporter V060002_01810 PF12911 N-terminal TM domain of oligopeptide transport permease C V060002_01810 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01811 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01814 PF00072 Response regulator receiver domain V060002_01815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01815 PF01584 CheW-like domain V060002_01815 PF09078 CheY binding V060002_01815 PF01627 Hpt domain V060002_01815 PF02895 Signal transducing histidine kinase, homodimeric domain V060002_01816 PF01584 CheW-like domain V060002_01817 PF01584 CheW-like domain V060002_01818 PF02203 Tar ligand binding domain homologue V060002_01818 PF00672 HAMP domain V060002_01818 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01819 PF01739 CheR methyltransferase, SAM binding domain V060002_01819 PF03705 CheR methyltransferase, all-alpha domain V060002_01820 PF03975 CheD chemotactic sensory transduction V060002_01821 PF01339 CheB methylesterase V060002_01821 PF00072 Response regulator receiver domain V060002_01822 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01822 PF02743 Cache domain V060002_01822 PF00672 HAMP domain V060002_01824 PF00072 Response regulator receiver domain V060002_01824 PF00486 Transcriptional regulatory protein, C terminal V060002_01826 PF03412 Peptidase C39 family V060002_01826 PF00005 ABC transporter V060002_01826 PF00664 ABC transporter transmembrane region V060002_01829 PF00529 HlyD membrane-fusion protein of T1SS V060002_01830 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region V060002_01830 PF01243 Pyridoxamine 5'-phosphate oxidase V060002_01831 PF00196 Bacterial regulatory proteins, luxR family V060002_01831 PF00072 Response regulator receiver domain V060002_01832 PF03781 Sulfatase-modifying factor enzyme 1 V060002_01834 PF12833 Helix-turn-helix domain V060002_01835 PF00171 Aldehyde dehydrogenase family V060002_01835 PF14850 DNA-binding domain of Proline dehydrogenase V060002_01835 PF18327 Proline utilization A proline dehydrogenase N-terminal domain V060002_01835 PF01619 Proline dehydrogenase V060002_01837 PF00474 Sodium:solute symporter family V060002_01839 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01839 PF02743 Cache domain V060002_01839 PF00672 HAMP domain V060002_01840 PF01037 Lrp/AsnC ligand binding domain V060002_01841 PF00171 Aldehyde dehydrogenase family V060002_01842 PF01276 Orn/Lys/Arg decarboxylase, major domain V060002_01842 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain V060002_01842 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain V060002_01843 PF13520 Amino acid permease V060002_01844 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V060002_01845 PF04013 Putative SAM-dependent RNA methyltransferase V060002_01846 PF03466 LysR substrate binding domain V060002_01846 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01847 PF00106 short chain dehydrogenase V060002_01848 PF00672 HAMP domain V060002_01848 PF02743 Cache domain V060002_01848 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01849 PF03466 LysR substrate binding domain V060002_01849 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01850 PF13460 NAD(P)H-binding V060002_01856 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V060002_01857 PF05068 Mannitol repressor V060002_01858 PF08125 Mannitol dehydrogenase C-terminal domain V060002_01858 PF01232 Mannitol dehydrogenase Rossmann domain V060002_01859 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V060002_01859 PF02378 Phosphotransferase system, EIIC V060002_01859 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V060002_01861 PF01551 Peptidase family M23 V060002_01861 PF04225 Opacity-associated protein A LysM-like domain V060002_01862 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V060002_01862 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V060002_01862 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V060002_01862 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V060002_01863 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01864 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_01865 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01866 PF00005 ABC transporter V060002_01867 PF00793 DAHP synthetase I family V060002_01869 PF00672 HAMP domain V060002_01869 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01872 PF12729 Four helix bundle sensory module for signal transduction V060002_01872 PF00672 HAMP domain V060002_01872 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01874 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V060002_01874 PF00128 Alpha amylase, catalytic domain V060002_01875 PF02264 LamB porin V060002_01876 PF07148 Maltose operon periplasmic protein precursor (MalM) V060002_01878 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase V060002_01882 PF03466 LysR substrate binding domain V060002_01882 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01883 PF07681 DoxX V060002_01884 PF06029 AlkA N-terminal domain V060002_01884 PF00730 HhH-GPD superfamily base excision DNA repair protein V060002_01885 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain V060002_01885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V060002_01887 PF03600 Citrate transporter V060002_01888 PF07670 Nucleoside recognition V060002_01889 PF07670 Nucleoside recognition V060002_01890 PF00462 Glutaredoxin V060002_01891 PF00892 EamA-like transporter family V060002_01892 PF13609 Gram-negative porin V060002_01893 PF02566 OsmC-like protein V060002_01894 PF01047 MarR family V060002_01895 PF01557 Fumarylacetoacetate (FAA) hydrolase family V060002_01898 PF12833 Helix-turn-helix domain V060002_01899 PF01810 LysE type translocator V060002_01901 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V060002_01903 PF00005 ABC transporter V060002_01903 PF00664 ABC transporter transmembrane region V060002_01905 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V060002_01907 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01907 PF03466 LysR substrate binding domain V060002_01908 PF00270 DEAD/DEAH box helicase V060002_01908 PF00271 Helicase conserved C-terminal domain V060002_01909 PF01554 MatE V060002_01910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01910 PF08447 PAS fold V060002_01911 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain V060002_01911 PF02896 PEP-utilising enzyme, TIM barrel domain V060002_01911 PF00391 PEP-utilising enzyme, mobile domain V060002_01912 PF03618 Kinase/pyrophosphorylase V060002_01914 PF01070 FMN-dependent dehydrogenase V060002_01915 PF02652 L-lactate permease V060002_01916 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01916 PF03466 LysR substrate binding domain V060002_01919 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01919 PF13426 PAS domain V060002_01919 PF08447 PAS fold V060002_01920 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_01921 PF00005 ABC transporter V060002_01921 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_01923 PF13654 AAA domain V060002_01923 PF05362 Lon protease (S16) C-terminal proteolytic domain V060002_01924 PF17200 Single Cache domain 2 V060002_01924 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01924 PF00672 HAMP domain V060002_01926 PF07690 Major Facilitator Superfamily V060002_01928 PF06865 Pyrimidine/purine nucleoside phosphorylase V060002_01929 PF05726 Pirin C-terminal cupin domain V060002_01929 PF02678 Pirin V060002_01931 PF00563 EAL domain V060002_01931 PF00990 Diguanylate cyclase, GGDEF domain V060002_01932 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01932 PF03466 LysR substrate binding domain V060002_01936 PF00990 Diguanylate cyclase, GGDEF domain V060002_01936 PF03707 Bacterial signalling protein N terminal repeat V060002_01936 PF00563 EAL domain V060002_01939 PF00990 Diguanylate cyclase, GGDEF domain V060002_01940 PF01047 MarR family V060002_01941 PF01584 CheW-like domain V060002_01941 PF00072 Response regulator receiver domain V060002_01943 PF00196 Bacterial regulatory proteins, luxR family V060002_01944 PF01906 Putative heavy-metal-binding V060002_01947 PF13302 Acetyltransferase (GNAT) domain V060002_01948 PF08402 TOBE domain V060002_01948 PF00005 ABC transporter V060002_01949 PF01547 Bacterial extracellular solute-binding protein V060002_01950 PF14785 Maltose transport system permease protein MalF P2 domain V060002_01950 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01951 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01954 PF08220 DeoR-like helix-turn-helix domain V060002_01954 PF00455 DeoR C terminal sensor domain V060002_01955 PF08448 PAS fold V060002_01955 PF00990 Diguanylate cyclase, GGDEF domain V060002_01957 PF00072 Response regulator receiver domain V060002_01957 PF12833 Helix-turn-helix domain V060002_01960 PF00313 'Cold-shock' DNA-binding domain V060002_01963 PF05661 Protein of unknown function (DUF808) V060002_01964 PF05958 tRNA (Uracil-5-)-methyltransferase V060002_01966 PF05656 Protein of unknown function (DUF805) V060002_01968 PF01979 Amidohydrolase family V060002_01969 PF03473 MOSC domain V060002_01969 PF03476 MOSC N-terminal beta barrel domain V060002_01969 PF03473 MOSC domain V060002_01969 PF00111 2Fe-2S iron-sulfur cluster binding domain V060002_01969 PF03476 MOSC N-terminal beta barrel domain V060002_01969 PF00111 2Fe-2S iron-sulfur cluster binding domain V060002_01970 PF02743 Cache domain V060002_01970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01970 PF00672 HAMP domain V060002_01976 PF00005 ABC transporter V060002_01977 PF01032 FecCD transport family V060002_01978 PF01497 Periplasmic binding protein V060002_01979 PF02472 Biopolymer transport protein ExbD/TolR V060002_01980 PF01618 MotA/TolQ/ExbB proton channel family V060002_01981 PF03544 Gram-negative bacterial TonB protein C-terminal V060002_01982 PF04055 Radical SAM superfamily V060002_01983 PF06228 Haem utilisation ChuX/HutX V060002_01984 PF01243 Pyridoxamine 5'-phosphate oxidase V060002_01985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01985 PF00672 HAMP domain V060002_01986 PF13556 PucR C-terminal helix-turn-helix domain V060002_01986 PF05651 Putative sugar diacid recognition V060002_01986 PF17853 GGDEF-like domain V060002_01987 PF02447 GntP family permease V060002_01988 PF02595 Glycerate kinase family V060002_01993 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain V060002_01993 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase V060002_01994 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase V060002_01995 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain V060002_01995 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain V060002_01996 PF01966 HD domain V060002_02001 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_02002 PF03466 LysR substrate binding domain V060002_02002 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02005 PF01965 DJ-1/PfpI family V060002_02006 PF00155 Aminotransferase class I and II V060002_02007 PF08240 Alcohol dehydrogenase GroES-like domain V060002_02007 PF00107 Zinc-binding dehydrogenase V060002_02014 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02014 PF03466 LysR substrate binding domain V060002_02015 PF00291 Pyridoxal-phosphate dependent enzyme V060002_02018 PF02322 Cytochrome bd terminal oxidase subunit II V060002_02019 PF01654 Cytochrome bd terminal oxidase subunit I V060002_02020 PF00155 Aminotransferase class I and II V060002_02020 PF00392 Bacterial regulatory proteins, gntR family V060002_02021 PF00768 D-alanyl-D-alanine carboxypeptidase V060002_02023 PF03922 OmpW family V060002_02024 PF03413 Peptidase propeptide and YPEB domain V060002_02024 PF04151 Bacterial pre-peptidase C-terminal domain V060002_02024 PF02868 Thermolysin metallopeptidase, alpha-helical domain V060002_02024 PF01447 Thermolysin metallopeptidase, catalytic domain V060002_02024 PF07504 Fungalysin/Thermolysin Propeptide Motif V060002_02025 PF08447 PAS fold V060002_02025 PF13426 PAS domain V060002_02025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02026 PF12262 Bacterial virulence factor lipase N-terminal V060002_02027 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) V060002_02028 PF00128 Alpha amylase, catalytic domain V060002_02029 PF00248 Aldo/keto reductase family V060002_02031 PF00005 ABC transporter V060002_02032 PF12704 MacB-like periplasmic core domain V060002_02032 PF02687 FtsX-like permease family V060002_02032 PF00005 ABC transporter V060002_02035 PF06580 Histidine kinase V060002_02035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02035 PF13492 GAF domain V060002_02035 PF07694 5TMR of 5TMR-LYT V060002_02036 PF00072 Response regulator receiver domain V060002_02036 PF04397 LytTr DNA-binding domain V060002_02038 PF00990 Diguanylate cyclase, GGDEF domain V060002_02039 PF13520 Amino acid permease V060002_02042 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V060002_02042 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V060002_02043 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V060002_02044 PF02566 OsmC-like protein V060002_02045 PF01595 Cyclin M transmembrane N-terminal domain V060002_02045 PF03471 Transporter associated domain V060002_02045 PF00571 CBS domain V060002_02046 PF14602 Hexapeptide repeat of succinyl-transferase V060002_02046 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_02046 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal V060002_02047 PF00892 EamA-like transporter family V060002_02049 PF03466 LysR substrate binding domain V060002_02049 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02053 PF13193 AMP-binding enzyme C-terminal domain V060002_02053 PF00501 AMP-binding enzyme V060002_02054 PF00351 Biopterin-dependent aromatic amino acid hydroxylase V060002_02055 PF01329 Pterin 4 alpha carbinolamine dehydratase V060002_02056 PF00583 Acetyltransferase (GNAT) family V060002_02057 PF00202 Aminotransferase class-III V060002_02058 PF06339 Ectoine synthase V060002_02059 PF00696 Amino acid kinase family V060002_02059 PF13840 ACT domain V060002_02061 PF00118 TCP-1/cpn60 chaperonin family V060002_02062 PF00166 Chaperonin 10 Kd subunit V060002_02063 PF01769 Divalent cation transporter V060002_02063 PF03448 MgtE intracellular N domain V060002_02063 PF00571 CBS domain V060002_02065 PF17810 Arginine decarboxylase helical bundle domain V060002_02065 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V060002_02065 PF17944 Arginine decarboxylase C-terminal helical extension V060002_02066 PF00491 Arginase family V060002_02067 PF04151 Bacterial pre-peptidase C-terminal domain V060002_02067 PF04389 Peptidase family M28 V060002_02068 PF07504 Fungalysin/Thermolysin Propeptide Motif V060002_02068 PF03413 Peptidase propeptide and YPEB domain V060002_02068 PF01447 Thermolysin metallopeptidase, catalytic domain V060002_02068 PF02868 Thermolysin metallopeptidase, alpha-helical domain V060002_02068 PF04151 Bacterial pre-peptidase C-terminal domain V060002_02069 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading V060002_02069 PF18416 N-acetylglucosamine binding protein domain 2 V060002_02070 PF04244 Deoxyribodipyrimidine photo-lyase-related protein V060002_02071 PF01575 MaoC like domain V060002_02072 PF12849 PBP superfamily domain V060002_02074 PF00773 RNB domain V060002_02074 PF08206 Ribonuclease B OB domain V060002_02074 PF00575 S1 RNA binding domain V060002_02075 PF03880 DbpA RNA binding domain V060002_02075 PF00271 Helicase conserved C-terminal domain V060002_02075 PF00270 DEAD/DEAH box helicase V060002_02077 PF00884 Sulfatase V060002_02078 PF00294 pfkB family carbohydrate kinase V060002_02081 PF13419 Haloacid dehalogenase-like hydrolase V060002_02083 PF02796 Helix-turn-helix domain of resolvase V060002_02083 PF00239 Resolvase, N terminal domain V060002_02086 PF01527 Transposase V060002_02087 PF00665 Integrase core domain V060002_02090 PF04002 RadC-like JAB domain V060002_02092 PF13088 BNR repeat-like domain V060002_02092 PF09264 Vibrio cholerae sialidase, lectin insertion V060002_02093 PF01979 Amidohydrolase family V060002_02094 PF00480 ROK family V060002_02095 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase V060002_02096 PF03480 Bacterial extracellular solute-binding protein, family 7 V060002_02097 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component V060002_02098 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component V060002_02099 PF00701 Dihydrodipicolinate synthetase family V060002_02100 PF01380 SIS domain V060002_02100 PF01418 Helix-turn-helix domain, rpiR family V060002_02101 PF01344 Kelch motif V060002_02102 PF07646 Kelch motif V060002_02106 PF02384 N-6 DNA Methylase V060002_02110 PF18766 SWI2/SNF2 ATPase V060002_02110 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) V060002_02110 PF11867 Domain of unknown function (DUF3387) V060002_02114 PF00176 SNF2 family N-terminal domain V060002_02114 PF00271 Helicase conserved C-terminal domain V060002_02114 PF12419 SNF2 Helicase protein V060002_02115 PF13356 Arm DNA-binding domain V060002_02115 PF00589 Phage integrase family V060002_02116 PF13356 Arm DNA-binding domain V060002_02116 PF00589 Phage integrase family V060002_02118 PF00873 AcrB/AcrD/AcrF family V060002_02119 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V060002_02121 PF02470 MlaD protein V060002_02122 PF04403 Paraquat-inducible protein A V060002_02123 PF00924 Mechanosensitive ion channel V060002_02123 PF05552 Conserved TM helix V060002_02127 PF00440 Bacterial regulatory proteins, tetR family V060002_02127 PF08362 YcdC-like protein, C-terminal region V060002_02128 PF00171 Aldehyde dehydrogenase family V060002_02129 PF07383 Protein of unknown function (DUF1496) V060002_02131 PF00440 Bacterial regulatory proteins, tetR family V060002_02131 PF16295 Tetracyclin repressor-like, C-terminal domain V060002_02132 PF09317 Domain of unknown function (DUF1974) V060002_02132 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V060002_02132 PF02770 Acyl-CoA dehydrogenase, middle domain V060002_02132 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V060002_02133 PF07055 Enoyl reductase FAD binding domain V060002_02133 PF12241 Trans-2-enoyl-CoA reductase catalytic region V060002_02133 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V060002_02134 PF01176 Translation initiation factor 1A / IF-1 V060002_02135 PF04376 Arginine-tRNA-protein transferase, N terminus V060002_02135 PF04377 Arginine-tRNA-protein transferase, C terminus V060002_02136 PF03588 Leucyl/phenylalanyl-tRNA protein transferase V060002_02137 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V060002_02138 PF10692 Protein of unknown function (DUF2498) V060002_02139 PF01131 DNA topoisomerase V060002_02139 PF01396 Topoisomerase DNA binding C4 zinc finger V060002_02139 PF08272 Topoisomerase I zinc-ribbon-like V060002_02139 PF01751 Toprim domain V060002_02140 PF00483 Nucleotidyl transferase V060002_02141 PF00534 Glycosyl transferases group 1 V060002_02141 PF08323 Starch synthase catalytic domain V060002_02146 PF04993 TfoX N-terminal domain V060002_02146 PF04994 TfoX C-terminal domain V060002_02147 PF00356 Bacterial regulatory proteins, lacI family V060002_02148 PF02613 Nitrate reductase delta subunit V060002_02149 PF00486 Transcriptional regulatory protein, C terminal V060002_02149 PF00072 Response regulator receiver domain V060002_02150 PF02698 DUF218 domain V060002_02152 PF03882 MukF winged-helix domain V060002_02152 PF17193 MukF C-terminal domain V060002_02152 PF17192 MukF middle domain V060002_02153 PF04288 MukE-like family V060002_02154 PF04310 MukB N-terminal V060002_02154 PF16330 MukB hinge domain V060002_02155 PF01037 Lrp/AsnC ligand binding domain V060002_02156 PF01810 LysE type translocator V060002_02157 PF11842 Domain of unknown function (DUF3362) V060002_02157 PF04055 Radical SAM superfamily V060002_02157 PF08497 Radical SAM N-terminal V060002_02158 PF00990 Diguanylate cyclase, GGDEF domain V060002_02158 PF03707 Bacterial signalling protein N terminal repeat V060002_02158 PF00563 EAL domain V060002_02159 PF00675 Insulinase (Peptidase family M16) V060002_02159 PF05193 Peptidase M16 inactive domain V060002_02162 PF03466 LysR substrate binding domain V060002_02162 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02163 PF01717 Cobalamin-independent synthase, Catalytic domain V060002_02163 PF08267 Cobalamin-independent synthase, N-terminal domain V060002_02165 PF03795 YCII-related domain V060002_02166 PF03061 Thioesterase superfamily V060002_02167 PF04279 Intracellular septation protein A V060002_02169 PF02698 DUF218 domain V060002_02170 PF01370 NAD dependent epimerase/dehydratase family V060002_02172 PF01226 Formate/nitrite transporter V060002_02173 PF06796 Periplasmic nitrate reductase protein NapE V060002_02174 PF03264 NapC/NirT cytochrome c family, N-terminal region V060002_02175 PF00384 Molybdopterin oxidoreductase V060002_02175 PF18364 Molybdopterin oxidoreductase N-terminal domain V060002_02175 PF01568 Molydopterin dinucleotide binding domain V060002_02179 PF01368 DHH family V060002_02179 PF02833 DHHA2 domain V060002_02182 PF00005 ABC transporter V060002_02183 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_02183 PF00005 ABC transporter V060002_02184 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02184 PF12911 N-terminal TM domain of oligopeptide transport permease C V060002_02185 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02186 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_02187 PF00158 Sigma-54 interaction domain V060002_02187 PF02954 Bacterial regulatory protein, Fis family V060002_02188 PF04012 PspA/IM30 family V060002_02191 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V060002_02191 PF00529 HlyD membrane-fusion protein of T1SS V060002_02192 PF13533 Biotin-lipoyl like V060002_02193 PF00873 AcrB/AcrD/AcrF family V060002_02194 PF03352 Methyladenine glycosylase V060002_02195 PF01053 Cys/Met metabolism PLP-dependent enzyme V060002_02196 PF13091 PLD-like domain V060002_02196 PF13396 Phospholipase_D-nuclease N-terminal V060002_02197 PF00209 Sodium:neurotransmitter symporter family V060002_02198 PF00849 RNA pseudouridylate synthase V060002_02199 PF01066 CDP-alcohol phosphatidyltransferase V060002_02200 PF00005 ABC transporter V060002_02201 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02202 PF13416 Bacterial extracellular solute-binding protein V060002_02204 PF06945 Protein of unknown function (DUF1289) V060002_02207 PF00005 ABC transporter V060002_02208 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V060002_02209 PF03222 Tryptophan/tyrosine permease family V060002_02212 PF01769 Divalent cation transporter V060002_02212 PF03448 MgtE intracellular N domain V060002_02212 PF00571 CBS domain V060002_02213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02213 PF00512 His Kinase A (phospho-acceptor) domain V060002_02213 PF09308 LuxQ, periplasmic V060002_02213 PF00072 Response regulator receiver domain V060002_02214 PF03707 Bacterial signalling protein N terminal repeat V060002_02214 PF00563 EAL domain V060002_02214 PF00990 Diguanylate cyclase, GGDEF domain V060002_02216 PF08453 Peptidase family M9 N-terminal V060002_02216 PF04151 Bacterial pre-peptidase C-terminal domain V060002_02216 PF01752 Collagenase V060002_02218 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_02218 PF12793 Sugar transport-related sRNA regulator N-term V060002_02222 PF12729 Four helix bundle sensory module for signal transduction V060002_02222 PF00672 HAMP domain V060002_02222 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02224 PF00360 Phytochrome region V060002_02224 PF00990 Diguanylate cyclase, GGDEF domain V060002_02224 PF01590 GAF domain V060002_02224 PF00563 EAL domain V060002_02225 PF01386 Ribosomal L25p family V060002_02227 PF00486 Transcriptional regulatory protein, C terminal V060002_02227 PF00072 Response regulator receiver domain V060002_02229 PF00271 Helicase conserved C-terminal domain V060002_02229 PF04851 Type III restriction enzyme, res subunit V060002_02230 PF00849 RNA pseudouridylate synthase V060002_02230 PF01479 S4 domain V060002_02231 PF07690 Major Facilitator Superfamily V060002_02233 PF13460 NAD(P)H-binding V060002_02233 PF11066 Protein of unknown function (DUF2867) V060002_02234 PF01554 MatE V060002_02235 PF00005 ABC transporter V060002_02238 PF06965 Na+/H+ antiporter 1 V060002_02239 PF00202 Aminotransferase class-III V060002_02240 PF03435 Saccharopine dehydrogenase NADP binding domain V060002_02240 PF16653 Saccharopine dehydrogenase C-terminal domain V060002_02242 PF00691 OmpA family V060002_02242 PF05736 OprF membrane domain V060002_02243 PF02321 Outer membrane efflux protein V060002_02247 PF03466 LysR substrate binding domain V060002_02247 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02249 PF01863 Protein of unknown function DUF45 V060002_02250 PF05971 RNA methyltransferase V060002_02253 PF04204 Homoserine O-succinyltransferase V060002_02257 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V060002_02260 PF00989 PAS fold V060002_02260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02260 PF17203 Single cache domain 3 V060002_02260 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain V060002_02261 PF12431 Transcriptional regulator V060002_02261 PF00072 Response regulator receiver domain V060002_02263 PF00072 Response regulator receiver domain V060002_02263 PF01584 CheW-like domain V060002_02266 PF00990 Diguanylate cyclase, GGDEF domain V060002_02266 PF00072 Response regulator receiver domain V060002_02270 PF07690 Major Facilitator Superfamily V060002_02271 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain V060002_02271 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain V060002_02272 PF10509 Galactokinase galactose-binding signature V060002_02272 PF00288 GHMP kinases N terminal domain V060002_02272 PF08544 GHMP kinases C terminal V060002_02273 PF01263 Aldose 1-epimerase V060002_02274 PF00990 Diguanylate cyclase, GGDEF domain V060002_02275 PF17154 Gammaproteobacterial periplasmic sensor domain V060002_02275 PF00563 EAL domain V060002_02275 PF00672 HAMP domain V060002_02275 PF00990 Diguanylate cyclase, GGDEF domain V060002_02277 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V060002_02277 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V060002_02277 PF00205 Thiamine pyrophosphate enzyme, central domain V060002_02278 PF03306 Alpha-acetolactate decarboxylase V060002_02279 PF03306 Alpha-acetolactate decarboxylase V060002_02280 PF03466 LysR substrate binding domain V060002_02280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02282 PF06628 Catalase-related immune-responsive V060002_02282 PF00199 Catalase V060002_02284 PF00080 Copper/zinc superoxide dismutase (SODC) V060002_02285 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) V060002_02286 PF00361 Proton-conducting membrane transporter V060002_02286 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus V060002_02287 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02287 PF03466 LysR substrate binding domain V060002_02288 PF13193 AMP-binding enzyme C-terminal domain V060002_02288 PF00501 AMP-binding enzyme V060002_02294 PF10415 Fumarase C C-terminus V060002_02294 PF00206 Lyase V060002_02296 PF01654 Cytochrome bd terminal oxidase subunit I V060002_02297 PF02322 Cytochrome bd terminal oxidase subunit II V060002_02298 PF02687 FtsX-like permease family V060002_02298 PF12704 MacB-like periplasmic core domain V060002_02298 PF00005 ABC transporter V060002_02299 PF12704 MacB-like periplasmic core domain V060002_02299 PF02687 FtsX-like permease family V060002_02299 PF00005 ABC transporter V060002_02300 PF12704 MacB-like periplasmic core domain V060002_02300 PF02687 FtsX-like permease family V060002_02300 PF00005 ABC transporter V060002_02302 PF00529 HlyD membrane-fusion protein of T1SS V060002_02304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02304 PF03466 LysR substrate binding domain V060002_02305 PF00141 Peroxidase V060002_02306 PF00232 Glycosyl hydrolase family 1 V060002_02307 PF00356 Bacterial regulatory proteins, lacI family V060002_02308 PF01042 Endoribonuclease L-PSP V060002_02309 PF04074 YhcH/YjgK/YiaL V060002_02310 PF03009 Glycerophosphoryl diester phosphodiesterase family V060002_02311 PF08220 DeoR-like helix-turn-helix domain V060002_02311 PF00455 DeoR C terminal sensor domain V060002_02312 PF17912 MalK OB fold domain V060002_02312 PF00005 ABC transporter V060002_02313 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02314 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02315 PF13416 Bacterial extracellular solute-binding protein V060002_02317 PF01618 MotA/TolQ/ExbB proton channel family V060002_02318 PF01618 MotA/TolQ/ExbB proton channel family V060002_02319 PF02472 Biopolymer transport protein ExbD/TolR V060002_02320 PF03544 Gram-negative bacterial TonB protein C-terminal V060002_02322 PF01068 ATP dependent DNA ligase domain V060002_02322 PF14743 DNA ligase OB-like domain V060002_02324 PF01554 MatE V060002_02328 PF00877 NlpC/P60 family V060002_02329 PF02743 Cache domain V060002_02329 PF00672 HAMP domain V060002_02329 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02332 PF00480 ROK family V060002_02336 PF03454 MoeA C-terminal region (domain IV) V060002_02336 PF00994 Probable molybdopterin binding domain V060002_02336 PF03453 MoeA N-terminal region (domain I and II) V060002_02337 PF12804 MobA-like NTP transferase domain V060002_02338 PF00005 ABC transporter V060002_02338 PF08402 TOBE domain V060002_02339 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02340 PF12849 PBP superfamily domain V060002_02341 PF02954 Bacterial regulatory protein, Fis family V060002_02341 PF00072 Response regulator receiver domain V060002_02341 PF00158 Sigma-54 interaction domain V060002_02342 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02342 PF00512 His Kinase A (phospho-acceptor) domain V060002_02342 PF00989 PAS fold V060002_02343 PF00005 ABC transporter V060002_02343 PF12848 ABC transporter V060002_02344 PF02634 FdhD/NarQ family V060002_02348 PF02613 Nitrate reductase delta subunit V060002_02350 PF01568 Molydopterin dinucleotide binding domain V060002_02350 PF00384 Molybdopterin oxidoreductase V060002_02350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V060002_02351 PF13247 4Fe-4S dicluster domain V060002_02354 PF02146 Sir2 family V060002_02355 PF04461 Protein of unknown function (DUF520) V060002_02356 PF00793 DAHP synthetase I family V060002_02359 PF17783 CvfB-like winged helix domain V060002_02359 PF13509 S1 domain V060002_02360 PF01189 16S rRNA methyltransferase RsmB/F V060002_02360 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF V060002_02360 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF V060002_02361 PF02470 MlaD protein V060002_02362 PF04403 Paraquat-inducible protein A V060002_02363 PF00005 ABC transporter V060002_02363 PF00664 ABC transporter transmembrane region V060002_02364 PF13185 GAF domain V060002_02365 PF17516 ProQ C-terminal domain V060002_02365 PF04352 ProQ/FINO family V060002_02366 PF17804 Tail specific protease N-terminal domain V060002_02366 PF03572 Peptidase family S41 V060002_02366 PF00595 PDZ domain V060002_02366 PF11818 C-terminal domain of tail specific protease (DUF3340) V060002_02368 PF01433 Peptidase family M1 domain V060002_02368 PF17432 Domain of unknown function (DUF3458_C) ARM repeats V060002_02368 PF11940 Domain of unknown function (DUF3458) Ig-like fold V060002_02369 PF05088 Bacterial NAD-glutamate dehydrogenase V060002_02370 PF01180 Dihydroorotate dehydrogenase V060002_02371 PF07126 Cell-division protein ZapC V060002_02373 PF10672 S-adenosylmethionine-dependent methyltransferase V060002_02373 PF02926 THUMP domain V060002_02373 PF01170 Putative RNA methylase family UPF0020 V060002_02377 PF04957 Ribosome modulation factor V060002_02378 PF07977 FabA-like domain V060002_02379 PF13654 AAA domain V060002_02379 PF05362 Lon protease (S16) C-terminal proteolytic domain V060002_02380 PF17414 MatP C-terminal ribbon-helix-helix domain V060002_02380 PF06303 MatP N-terminal domain V060002_02383 PF11647 Membrane Localization Domain V060002_02383 PF12146 Serine aminopeptidase, S33 V060002_02383 PF16671 Actin cross-linking domain V060002_02383 PF11713 Peptidase C80 family V060002_02383 PF07634 RtxA repeat V060002_02384 PF02794 RTX toxin acyltransferase family V060002_02386 PF03412 Peptidase C39 family V060002_02386 PF00005 ABC transporter V060002_02386 PF00664 ABC transporter transmembrane region V060002_02388 PF03412 Peptidase C39 family V060002_02388 PF00005 ABC transporter V060002_02388 PF00664 ABC transporter transmembrane region V060002_02389 PF00072 Response regulator receiver domain V060002_02389 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02389 PF09308 LuxQ, periplasmic V060002_02389 PF00512 His Kinase A (phospho-acceptor) domain V060002_02392 PF00115 Cytochrome C and Quinol oxidase polypeptide I V060002_02395 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP V060002_02395 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V060002_02397 PF00403 Heavy-metal-associated domain V060002_02400 PF00027 Cyclic nucleotide-binding domain V060002_02400 PF13545 Crp-like helix-turn-helix domain V060002_02401 PF00582 Universal stress protein family V060002_02402 PF01171 PP-loop family V060002_02406 PF08402 TOBE domain V060002_02406 PF00005 ABC transporter V060002_02407 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02408 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02409 PF13416 Bacterial extracellular solute-binding protein V060002_02410 PF13416 Bacterial extracellular solute-binding protein V060002_02413 PF01235 Sodium:alanine symporter family V060002_02414 PF01810 LysE type translocator V060002_02419 PF04717 Type VI secretion system, phage-baseplate injector V060002_02419 PF16671 Actin cross-linking domain V060002_02420 PF05638 Type VI secretion system effector, Hcp V060002_02421 PF02074 Carboxypeptidase Taq (M32) metallopeptidase V060002_02422 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02422 PF02743 Cache domain V060002_02422 PF00672 HAMP domain V060002_02423 PF07690 Major Facilitator Superfamily V060002_02424 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V060002_02424 PF00529 HlyD membrane-fusion protein of T1SS V060002_02425 PF02321 Outer membrane efflux protein V060002_02427 PF00271 Helicase conserved C-terminal domain V060002_02427 PF00270 DEAD/DEAH box helicase V060002_02428 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02428 PF08447 PAS fold V060002_02428 PF13426 PAS domain V060002_02429 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02429 PF12729 Four helix bundle sensory module for signal transduction V060002_02429 PF00672 HAMP domain V060002_02430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02430 PF17202 Single cache domain 3 V060002_02430 PF00672 HAMP domain V060002_02431 PF01584 CheW-like domain V060002_02432 PF00072 Response regulator receiver domain V060002_02432 PF01339 CheB methylesterase V060002_02434 PF01739 CheR methyltransferase, SAM binding domain V060002_02434 PF03705 CheR methyltransferase, all-alpha domain V060002_02435 PF01627 Hpt domain V060002_02435 PF00072 Response regulator receiver domain V060002_02435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02435 PF01584 CheW-like domain V060002_02436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02436 PF07194 P2 response regulator binding domain V060002_02436 PF02895 Signal transducing histidine kinase, homodimeric domain V060002_02436 PF01627 Hpt domain V060002_02436 PF01584 CheW-like domain V060002_02439 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02439 PF00672 HAMP domain V060002_02440 PF00893 Small Multidrug Resistance protein V060002_02441 PF00875 DNA photolyase V060002_02441 PF03441 FAD binding domain of DNA photolyase V060002_02442 PF07690 Major Facilitator Superfamily V060002_02443 PF03466 LysR substrate binding domain V060002_02443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02444 PF03099 Biotin/lipoate A/B protein ligase family V060002_02444 PF10437 Bacterial lipoate protein ligase C-terminus V060002_02445 PF00012 Hsp70 protein V060002_02447 PF00270 DEAD/DEAH box helicase V060002_02447 PF11898 Domain of unknown function (DUF3418) V060002_02447 PF04408 Helicase associated domain (HA2) V060002_02447 PF00271 Helicase conserved C-terminal domain V060002_02447 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold V060002_02452 PF00563 EAL domain V060002_02452 PF03707 Bacterial signalling protein N terminal repeat V060002_02452 PF00990 Diguanylate cyclase, GGDEF domain V060002_02454 PF00012 Hsp70 protein V060002_02455 PF00012 Hsp70 protein V060002_02456 PF00990 Diguanylate cyclase, GGDEF domain V060002_02456 PF17158 Membrane-associated sensor, integral membrane domain V060002_02458 PF03707 Bacterial signalling protein N terminal repeat V060002_02458 PF00990 Diguanylate cyclase, GGDEF domain V060002_02458 PF00563 EAL domain V060002_02462 PF06508 Queuosine biosynthesis protein QueC V060002_02463 PF04055 Radical SAM superfamily V060002_02466 PF14824 Sirohaem biosynthesis protein central V060002_02466 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V060002_02466 PF10414 Sirohaem synthase dimerisation region V060002_02467 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_02468 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02469 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02470 PF00005 ABC transporter V060002_02471 PF01027 Inhibitor of apoptosis-promoting Bax1 V060002_02472 PF04358 DsrC like protein V060002_02473 PF00708 Acylphosphatase V060002_02474 PF17785 PUA-like domain V060002_02474 PF10672 S-adenosylmethionine-dependent methyltransferase V060002_02475 PF00990 Diguanylate cyclase, GGDEF domain V060002_02476 PF08534 Redoxin V060002_02476 PF00462 Glutaredoxin V060002_02477 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02477 PF01627 Hpt domain V060002_02477 PF00072 Response regulator receiver domain V060002_02477 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V060002_02477 PF00512 His Kinase A (phospho-acceptor) domain V060002_02477 PF00672 HAMP domain V060002_02478 PF00072 Response regulator receiver domain V060002_02479 PF14497 Glutathione S-transferase, C-terminal domain V060002_02479 PF02798 Glutathione S-transferase, N-terminal domain V060002_02481 PF04209 homogentisate 1,2-dioxygenase V060002_02482 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_02483 PF01546 Peptidase family M20/M25/M40 V060002_02483 PF07687 Peptidase dimerisation domain V060002_02486 PF00501 AMP-binding enzyme V060002_02486 PF13193 AMP-binding enzyme C-terminal domain V060002_02486 PF16177 Acetyl-coenzyme A synthetase N-terminus V060002_02487 PF04303 PrpF protein V060002_02488 PF00694 Aconitase C-terminal domain V060002_02488 PF00330 Aconitase family (aconitate hydratase) V060002_02489 PF00285 Citrate synthase, C-terminal domain V060002_02491 PF07729 FCD domain V060002_02491 PF00392 Bacterial regulatory proteins, gntR family V060002_02494 PF01970 Tripartite tricarboxylate transporter TctA family V060002_02497 PF02653 Branched-chain amino acid transport system / permease component V060002_02498 PF00005 ABC transporter V060002_02499 PF13407 Periplasmic binding protein domain V060002_02503 PF00072 Response regulator receiver domain V060002_02503 PF00486 Transcriptional regulatory protein, C terminal V060002_02504 PF00672 HAMP domain V060002_02504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02504 PF00512 His Kinase A (phospho-acceptor) domain V060002_02505 PF06629 MltA-interacting protein MipA V060002_02506 PF04393 Protein of unknown function (DUF535) V060002_02507 PF00158 Sigma-54 interaction domain V060002_02507 PF00072 Response regulator receiver domain V060002_02507 PF02954 Bacterial regulatory protein, Fis family V060002_02508 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_02508 PF00512 His Kinase A (phospho-acceptor) domain V060002_02508 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02509 PF00939 Sodium:sulfate symporter transmembrane region V060002_02510 PF00672 HAMP domain V060002_02510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02511 PF00842 Alanine racemase, C-terminal domain V060002_02511 PF01168 Alanine racemase, N-terminal domain V060002_02512 PF00892 EamA-like transporter family V060002_02514 PF13302 Acetyltransferase (GNAT) domain V060002_02515 PF00158 Sigma-54 interaction domain V060002_02515 PF18024 Helix-turn-helix domain V060002_02516 PF05128 Domain of unknown function (DUF697) V060002_02517 PF04317 YcjX-like family, DUF463 V060002_02520 PF04715 Anthranilate synthase component I, N terminal region V060002_02520 PF00425 chorismate binding enzyme V060002_02521 PF00293 NUDIX domain V060002_02522 PF03222 Tryptophan/tyrosine permease family V060002_02523 PF03313 Serine dehydratase alpha chain V060002_02523 PF03315 Serine dehydratase beta chain V060002_02524 PF01242 6-pyruvoyl tetrahydropterin synthase V060002_02525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02525 PF00672 HAMP domain V060002_02526 PF00152 tRNA synthetases class II (D, K and N) V060002_02526 PF01336 OB-fold nucleic acid binding domain V060002_02527 PF08543 Phosphomethylpyrimidine kinase V060002_02528 PF01966 HD domain V060002_02528 PF00672 HAMP domain V060002_02529 PF00155 Aminotransferase class I and II V060002_02533 PF17200 Single Cache domain 2 V060002_02533 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02533 PF00672 HAMP domain V060002_02534 PF04349 Periplasmic glucan biosynthesis protein, MdoG V060002_02535 PF13506 Glycosyl transferase family 21 V060002_02536 PF00356 Bacterial regulatory proteins, lacI family V060002_02537 PF04794 YdjC-like protein V060002_02538 PF11975 Family 4 glycosyl hydrolase C-terminal domain V060002_02538 PF02056 Family 4 glycosyl hydrolase V060002_02539 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit V060002_02540 PF02378 Phosphotransferase system, EIIC V060002_02541 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V060002_02542 PF01522 Polysaccharide deacetylase V060002_02543 PF02028 BCCT, betaine/carnitine/choline family transporter V060002_02544 PF01047 MarR family V060002_02545 PF00072 Response regulator receiver domain V060002_02545 PF00196 Bacterial regulatory proteins, luxR family V060002_02546 PF17200 Single Cache domain 2 V060002_02546 PF07730 Histidine kinase V060002_02547 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component V060002_02549 PF03480 Bacterial extracellular solute-binding protein, family 7 V060002_02552 PF00753 Metallo-beta-lactamase superfamily V060002_02553 PF05951 Bacterial protein of unknown function (DUF882) V060002_02554 PF01471 Putative peptidoglycan binding domain V060002_02554 PF03734 L,D-transpeptidase catalytic domain V060002_02559 PF00925 GTP cyclohydrolase II V060002_02561 PF07690 Major Facilitator Superfamily V060002_02564 PF00521 DNA gyrase/topoisomerase IV, subunit A V060002_02564 PF03989 DNA gyrase C-terminal domain, beta-propeller V060002_02566 PF03477 ATP cone domain V060002_02566 PF02867 Ribonucleotide reductase, barrel domain V060002_02566 PF00317 Ribonucleotide reductase, all-alpha domain V060002_02567 PF00268 Ribonucleotide reductase, small chain V060002_02568 PF00175 Oxidoreductase NAD-binding domain V060002_02568 PF00970 Oxidoreductase FAD-binding domain V060002_02568 PF00111 2Fe-2S iron-sulfur cluster binding domain V060002_02570 PF00994 Probable molybdopterin binding domain V060002_02573 PF00672 HAMP domain V060002_02573 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02573 PF17200 Single Cache domain 2 V060002_02576 PF00005 ABC transporter V060002_02577 PF01032 FecCD transport family V060002_02578 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family V060002_02580 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase V060002_02581 PF02654 Cobalamin-5-phosphate synthase V060002_02582 PF02277 Phosphoribosyltransferase V060002_02583 PF01641 SelR domain V060002_02585 PF08411 Exonuclease C-terminal V060002_02585 PF00929 Exonuclease V060002_02586 PF03788 LrgA family V060002_02587 PF04172 LrgB-like family V060002_02588 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region V060002_02588 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V060002_02590 PF02222 ATP-grasp domain V060002_02591 PF05724 Thiopurine S-methyltransferase (TPMT) V060002_02594 PF00216 Bacterial DNA-binding protein V060002_02595 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain V060002_02595 PF01588 Putative tRNA binding domain V060002_02595 PF03147 Ferredoxin-fold anticodon binding domain V060002_02595 PF03484 tRNA synthetase B5 domain V060002_02595 PF03483 B3/4 domain V060002_02596 PF01409 tRNA synthetases class II core domain (F) V060002_02596 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain V060002_02598 PF00072 Response regulator receiver domain V060002_02598 PF00990 Diguanylate cyclase, GGDEF domain V060002_02603 PF01066 CDP-alcohol phosphatidyltransferase V060002_02604 PF01541 GIY-YIG catalytic domain V060002_02604 PF02151 UvrB/uvrC motif V060002_02604 PF08459 UvrC Helix-hairpin-helix N-terminal V060002_02605 PF00196 Bacterial regulatory proteins, luxR family V060002_02605 PF00072 Response regulator receiver domain V060002_02606 PF03104 DNA polymerase family B, exonuclease domain V060002_02606 PF00136 DNA polymerase family B V060002_02607 PF00563 EAL domain V060002_02607 PF00990 Diguanylate cyclase, GGDEF domain V060002_02607 PF13426 PAS domain V060002_02609 PF01132 Elongation factor P (EF-P) OB domain V060002_02609 PF09285 Elongation factor P, C-terminal V060002_02609 PF08207 Elongation factor P (EF-P) KOW-like domain V060002_02610 PF04269 Protein of unknown function, DUF440 V060002_02612 PF07702 UTRA domain V060002_02612 PF00392 Bacterial regulatory proteins, gntR family V060002_02613 PF01979 Amidohydrolase family V060002_02614 PF00491 Arginase family V060002_02615 PF01175 Urocanase Rossmann-like domain V060002_02615 PF17392 Urocanase C-terminal domain V060002_02615 PF17391 Urocanase N-terminal domain V060002_02616 PF00221 Aromatic amino acid lyase V060002_02618 PF00089 Trypsin V060002_02619 PF04191 Phospholipid methyltransferase V060002_02620 PF13183 4Fe-4S dicluster domain V060002_02620 PF01565 FAD binding domain V060002_02620 PF02913 FAD linked oxidases, C-terminal domain V060002_02623 PF00691 OmpA family V060002_02623 PF13488 Glycine zipper V060002_02627 PF01259 SAICAR synthetase V060002_02629 PF00390 Malic enzyme, N-terminal domain V060002_02629 PF03949 Malic enzyme, NAD binding domain V060002_02631 PF02698 DUF218 domain V060002_02632 PF08448 PAS fold V060002_02632 PF00990 Diguanylate cyclase, GGDEF domain V060002_02633 PF00266 Aminotransferase class-V V060002_02635 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_02636 PF00664 ABC transporter transmembrane region V060002_02636 PF00005 ABC transporter V060002_02637 PF00664 ABC transporter transmembrane region V060002_02637 PF00005 ABC transporter V060002_02638 PF01479 S4 domain V060002_02638 PF00849 RNA pseudouridylate synthase V060002_02639 PF01300 Telomere recombination V060002_02640 PF02811 PHP domain V060002_02641 PF04715 Anthranilate synthase component I, N terminal region V060002_02641 PF00425 chorismate binding enzyme V060002_02642 PF00117 Glutamine amidotransferase class-I V060002_02643 PF02885 Glycosyl transferase family, helical bundle domain V060002_02643 PF00591 Glycosyl transferase family, a/b domain V060002_02644 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase V060002_02644 PF00218 Indole-3-glycerol phosphate synthase V060002_02645 PF00291 Pyridoxal-phosphate dependent enzyme V060002_02646 PF00290 Tryptophan synthase alpha chain V060002_02647 PF00375 Sodium:dicarboxylate symporter family V060002_02648 PF00265 Thymidine kinase V060002_02649 PF01336 OB-fold nucleic acid binding domain V060002_02649 PF00152 tRNA synthetases class II (D, K and N) V060002_02649 PF02938 GAD domain V060002_02650 PF01904 Protein of unknown function DUF72 V060002_02651 PF13649 Methyltransferase domain V060002_02652 PF08003 Protein of unknown function (DUF1698) V060002_02653 PF08443 RimK-like ATP-grasp domain V060002_02653 PF18030 RimK PreATP-grasp domain V060002_02656 PF00266 Aminotransferase class-V V060002_02658 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02658 PF00512 His Kinase A (phospho-acceptor) domain V060002_02658 PF00989 PAS fold V060002_02661 PF04993 TfoX N-terminal domain V060002_02661 PF04994 TfoX C-terminal domain V060002_02663 PF03956 Lysine exporter LysO V060002_02665 PF00282 Pyridoxal-dependent decarboxylase conserved domain V060002_02666 PF01380 SIS domain V060002_02666 PF01418 Helix-turn-helix domain, rpiR family V060002_02667 PF00171 Aldehyde dehydrogenase family V060002_02667 PF00465 Iron-containing alcohol dehydrogenase V060002_02668 PF00462 Glutaredoxin V060002_02669 PF06826 Predicted Permease Membrane Region V060002_02669 PF02080 TrkA-C domain V060002_02670 PF17871 AAA lid domain V060002_02670 PF10431 C-terminal, D2-small domain, of ClpB protein V060002_02670 PF00004 ATPase family associated with various cellular activities (AAA) V060002_02670 PF02861 Clp amino terminal domain, pathogenicity island component V060002_02670 PF07724 AAA domain (Cdc48 subfamily) V060002_02671 PF02617 ATP-dependent Clp protease adaptor protein ClpS V060002_02672 PF00313 'Cold-shock' DNA-binding domain V060002_02673 PF03971 Monomeric isocitrate dehydrogenase V060002_02674 PF00849 RNA pseudouridylate synthase V060002_02675 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase V060002_02675 PF01502 Phosphoribosyl-AMP cyclohydrolase V060002_02676 PF00977 Histidine biosynthesis protein V060002_02677 PF00977 Histidine biosynthesis protein V060002_02678 PF00117 Glutamine amidotransferase class-I V060002_02679 PF08645 Polynucleotide kinase 3 phosphatase V060002_02679 PF00475 Imidazoleglycerol-phosphate dehydratase V060002_02680 PF00155 Aminotransferase class I and II V060002_02681 PF00815 Histidinol dehydrogenase V060002_02682 PF01634 ATP phosphoribosyltransferase V060002_02682 PF08029 HisG, C-terminal domain V060002_02683 PF03553 Na+/H+ antiporter family V060002_02684 PF00816 H-NS histone family V060002_02685 PF00294 pfkB family carbohydrate kinase V060002_02687 PF04356 Protein of unknown function (DUF489) V060002_02688 PF00206 Lyase V060002_02688 PF08328 Adenylosuccinate lyase C-terminal V060002_02690 PF16036 Chalcone isomerase-like V060002_02695 PF00106 short chain dehydrogenase V060002_02697 PF01435 Peptidase family M48 V060002_02700 PF08241 Methyltransferase domain V060002_02701 PF00155 Aminotransferase class I and II V060002_02702 PF04055 Radical SAM superfamily V060002_02702 PF06968 Biotin and Thiamin Synthesis associated domain V060002_02703 PF00202 Aminotransferase class-III V060002_02704 PF02403 Seryl-tRNA synthetase N-terminal domain V060002_02704 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V060002_02705 PF12002 MgsA AAA+ ATPase C terminal V060002_02705 PF16193 AAA C-terminal domain V060002_02705 PF00004 ATPase family associated with various cellular activities (AAA) V060002_02706 PF03548 Outer membrane lipoprotein carrier protein LolA V060002_02707 PF01043 SecA preprotein cross-linking domain V060002_02707 PF07516 SecA Wing and Scaffold domain V060002_02707 PF02810 SEC-C motif V060002_02707 PF07517 SecA DEAD-like domain V060002_02708 PF01207 Dihydrouridine synthase (Dus) V060002_02709 PF00990 Diguanylate cyclase, GGDEF domain V060002_02710 PF00005 ABC transporter V060002_02711 PF02653 Branched-chain amino acid transport system / permease component V060002_02713 PF09905 DNA-binding protein VF530 V060002_02714 PF04217 Protein of unknown function, DUF412 V060002_02715 PF00871 Acetokinase family V060002_02716 PF01515 Phosphate acetyl/butaryl transferase V060002_02716 PF07085 DRTGG domain V060002_02717 PF13409 Glutathione S-transferase, N-terminal domain V060002_02718 PF00005 ABC transporter V060002_02718 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_02719 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_02719 PF00005 ABC transporter V060002_02720 PF12911 N-terminal TM domain of oligopeptide transport permease C V060002_02720 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02721 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02722 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_02724 PF13188 PAS domain V060002_02724 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02724 PF08448 PAS fold V060002_02724 PF00072 Response regulator receiver domain V060002_02724 PF00512 His Kinase A (phospho-acceptor) domain V060002_02725 PF02954 Bacterial regulatory protein, Fis family V060002_02725 PF00072 Response regulator receiver domain V060002_02725 PF00158 Sigma-54 interaction domain V060002_02726 PF00563 EAL domain V060002_02726 PF00990 Diguanylate cyclase, GGDEF domain V060002_02726 PF03707 Bacterial signalling protein N terminal repeat V060002_02726 PF13188 PAS domain V060002_02727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02727 PF00512 His Kinase A (phospho-acceptor) domain V060002_02728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02728 PF13188 PAS domain V060002_02728 PF00512 His Kinase A (phospho-acceptor) domain V060002_02728 PF13426 PAS domain V060002_02728 PF00989 PAS fold V060002_02730 PF00072 Response regulator receiver domain V060002_02733 PF03481 Putative GTP-binding controlling metal-binding V060002_02733 PF01300 Telomere recombination V060002_02736 PF01161 Phosphatidylethanolamine-binding protein V060002_02738 PF00704 Glycosyl hydrolases family 18 V060002_02738 PF06483 Chitinase C V060002_02741 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V060002_02741 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V060002_02742 PF01022 Bacterial regulatory protein, arsR family V060002_02743 PF00990 Diguanylate cyclase, GGDEF domain V060002_02743 PF08448 PAS fold V060002_02745 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V060002_02748 PF01037 Lrp/AsnC ligand binding domain V060002_02748 PF13404 AsnC-type helix-turn-helix domain V060002_02749 PF00291 Pyridoxal-phosphate dependent enzyme V060002_02750 PF08496 Peptidase family S49 N-terminal V060002_02750 PF01343 Peptidase family S49 V060002_02751 PF00106 short chain dehydrogenase V060002_02752 PF03692 Putative zinc- or iron-chelating domain V060002_02753 PF03692 Putative zinc- or iron-chelating domain V060002_02754 PF13662 Toprim domain V060002_02754 PF02132 RecR protein V060002_02755 PF02575 YbaB/EbfC DNA-binding family V060002_02756 PF12170 DNA polymerase III tau subunit V interacting with alpha V060002_02756 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding V060002_02756 PF12169 DNA polymerase III subunits gamma and tau domain III V060002_02757 PF00156 Phosphoribosyl transferase domain V060002_02758 PF04304 Protein of unknown function (DUF454) V060002_02760 PF00072 Response regulator receiver domain V060002_02761 PF03466 LysR substrate binding domain V060002_02761 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02762 PF00881 Nitroreductase family V060002_02763 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V060002_02763 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V060002_02763 PF00378 Enoyl-CoA hydratase/isomerase V060002_02764 PF02803 Thiolase, C-terminal domain V060002_02764 PF00108 Thiolase, N-terminal domain V060002_02765 PF04542 Sigma-70 region 2 V060002_02765 PF08281 Sigma-70, region 4 V060002_02767 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) V060002_02768 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) V060002_02769 PF01451 Low molecular weight phosphotyrosine protein phosphatase V060002_02770 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP V060002_02770 PF12557 Cob(I)alamin adenosyltransferase N terminal V060002_02771 PF05170 AsmA family V060002_02772 PF00485 Phosphoribulokinase / Uridine kinase family V060002_02773 PF10609 NUBPL iron-transfer P-loop NTPase V060002_02774 PF09334 tRNA synthetases class I (M) V060002_02774 PF01588 Putative tRNA binding domain V060002_02776 PF01048 Phosphorylase superfamily V060002_02777 PF00403 Heavy-metal-associated domain V060002_02778 PF03061 Thioesterase superfamily V060002_02778 PF00571 CBS domain V060002_02778 PF07085 DRTGG domain V060002_02778 PF00392 Bacterial regulatory proteins, gntR family V060002_02779 PF00990 Diguanylate cyclase, GGDEF domain V060002_02779 PF07694 5TMR of 5TMR-LYT V060002_02780 PF02391 MoaE protein V060002_02781 PF02597 ThiS family V060002_02782 PF01967 MoaC family V060002_02783 PF00994 Probable molybdopterin binding domain V060002_02784 PF04055 Radical SAM superfamily V060002_02784 PF06463 Molybdenum Cofactor Synthesis C V060002_02785 PF01933 Uncharacterised protein family UPF0052 V060002_02786 PF01627 Hpt domain V060002_02787 PF00158 Sigma-54 interaction domain V060002_02787 PF02954 Bacterial regulatory protein, Fis family V060002_02787 PF00072 Response regulator receiver domain V060002_02788 PF00271 Helicase conserved C-terminal domain V060002_02788 PF04851 Type III restriction enzyme, res subunit V060002_02788 PF12344 Ultra-violet resistance protein B V060002_02788 PF02151 UvrB/uvrC motif V060002_02788 PF17757 UvrB interaction domain V060002_02790 PF02508 Rnf-Nqr subunit, membrane protein V060002_02791 PF04060 Putative Fe-S cluster V060002_02792 PF12838 4Fe-4S dicluster domain V060002_02792 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit V060002_02792 PF10531 SLBB domain V060002_02792 PF13375 RnfC Barrel sandwich hybrid domain V060002_02793 PF03116 NQR2, RnfD, RnfE family V060002_02794 PF04205 FMN-binding domain V060002_02795 PF02508 Rnf-Nqr subunit, membrane protein V060002_02796 PF10576 Iron-sulfur binding domain of endonuclease III V060002_02796 PF00730 HhH-GPD superfamily base excision DNA repair protein V060002_02796 PF00633 Helix-hairpin-helix motif V060002_02797 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_02798 PF10952 Protein of unknown function (DUF2753) V060002_02799 PF18393 MotY N-terminal domain V060002_02799 PF00691 OmpA family V060002_02800 PF00929 Exonuclease V060002_02801 PF03553 Na+/H+ antiporter family V060002_02801 PF13726 Na+-H+ antiporter family V060002_02802 PF00156 Phosphoribosyl transferase domain V060002_02803 PF02674 Colicin V production protein V060002_02804 PF05036 Sporulation related domain V060002_02805 PF02875 Mur ligase family, glutamate ligase domain V060002_02805 PF08245 Mur ligase middle domain V060002_02806 PF01039 Carboxyl transferase domain V060002_02806 PF17848 Acetyl-coA carboxylase zinc finger domain V060002_02807 PF01416 tRNA pseudouridine synthase V060002_02809 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain V060002_02809 PF00749 tRNA synthetases class I (E and Q), catalytic domain V060002_02810 PF02378 Phosphotransferase system, EIIC V060002_02810 PF00367 phosphotransferase system, EIIB V060002_02810 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V060002_02811 PF01979 Amidohydrolase family V060002_02812 PF00480 ROK family V060002_02812 PF01047 MarR family V060002_02813 PF02254 TrkA-N domain V060002_02813 PF00999 Sodium/hydrogen exchanger family V060002_02814 PF13537 Glutamine amidotransferase domain V060002_02814 PF00733 Asparagine synthase V060002_02815 PF02357 Transcription termination factor nusG V060002_02816 PF00854 POT family V060002_02817 PF00762 Ferrochelatase V060002_02818 PF05191 Adenylate kinase, active site lid V060002_02819 PF00183 Hsp90 protein V060002_02819 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02820 PF00486 Transcriptional regulatory protein, C terminal V060002_02821 PF00486 Transcriptional regulatory protein, C terminal V060002_02822 PF17323 Trans-membrane regulatory protein ToxS V060002_02824 PF12850 Calcineurin-like phosphoesterase superfamily domain V060002_02825 PF08338 Domain of unknown function (DUF1731) V060002_02825 PF01370 NAD dependent epimerase/dehydratase family V060002_02826 PF00106 short chain dehydrogenase V060002_02827 PF00085 Thioredoxin V060002_02828 PF16200 C-terminal region of band_7 V060002_02828 PF01145 SPFH domain / Band 7 family V060002_02829 PF01957 NfeD-like C-terminal, partner-binding V060002_02830 PF13411 MerR HTH family regulatory protein V060002_02832 PF13609 Gram-negative porin V060002_02833 PF00533 BRCA1 C Terminus (BRCT) domain V060002_02833 PF03120 NAD-dependent DNA ligase OB-fold domain V060002_02833 PF03119 NAD-dependent DNA ligase C4 zinc finger domain V060002_02833 PF12826 Helix-hairpin-helix motif V060002_02833 PF01653 NAD-dependent DNA ligase adenylation domain V060002_02834 PF04354 ZipA, C-terminal FtsZ-binding domain V060002_02836 PF00291 Pyridoxal-phosphate dependent enzyme V060002_02837 PF00381 PTS HPr component phosphorylation site V060002_02838 PF02896 PEP-utilising enzyme, TIM barrel domain V060002_02838 PF05524 PEP-utilising enzyme, N-terminal V060002_02838 PF00391 PEP-utilising enzyme, mobile domain V060002_02839 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V060002_02840 PF01494 FAD binding domain V060002_02841 PF01938 TRAM domain V060002_02841 PF00919 Uncharacterized protein family UPF0004 V060002_02841 PF04055 Radical SAM superfamily V060002_02842 PF02562 PhoH-like protein V060002_02843 PF02130 Uncharacterized protein family UPF0054 V060002_02844 PF03471 Transporter associated domain V060002_02844 PF00571 CBS domain V060002_02845 PF00795 Carbon-nitrogen hydrolase V060002_02846 PF07295 Zinc-ribbon containing domain V060002_02847 PF08264 Anticodon-binding domain of tRNA V060002_02847 PF13603 Leucyl-tRNA synthetase, Domain 2 V060002_02847 PF00133 tRNA synthetases class I (I, L, M and V) V060002_02848 PF04390 Lipopolysaccharide-assembly V060002_02849 PF06144 DNA polymerase III, delta subunit V060002_02849 PF14840 Processivity clamp loader gamma complex DNA pol III C-term V060002_02851 PF02590 Predicted SPOUT methyltransferase V060002_02852 PF00905 Penicillin binding protein transpeptidase domain V060002_02852 PF03717 Penicillin-binding Protein dimerisation domain V060002_02853 PF01098 Cell cycle protein V060002_02854 PF03330 Lytic transglycolase V060002_02854 PF05036 Sporulation related domain V060002_02855 PF07943 Penicillin-binding protein 5, C-terminal domain V060002_02855 PF00768 D-alanyl-D-alanine carboxypeptidase V060002_02856 PF04359 Protein of unknown function (DUF493) V060002_02857 PF03099 Biotin/lipoate A/B protein ligase family V060002_02858 PF04055 Radical SAM superfamily V060002_02858 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family V060002_02860 PF00464 Serine hydroxymethyltransferase V060002_02864 PF02706 Chain length determinant protein V060002_02864 PF13614 AAA domain V060002_02864 PF13807 G-rich domain on putative tyrosine kinase V060002_02865 PF10531 SLBB domain V060002_02865 PF02563 Polysaccharide biosynthesis/export protein V060002_02865 PF18412 Outer-membrane lipoprotein Wza C-terminal domain V060002_02867 PF02397 Bacterial sugar transferase V060002_02870 PF17945 Beta/Gamma crystallin V060002_02870 PF12561 ToxR activated gene A lipoprotein domain V060002_02873 PF03808 Glycosyl transferase WecB/TagA/CpsF family V060002_02875 PF00534 Glycosyl transferases group 1 V060002_02875 PF00862 Sucrose synthase V060002_02877 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_02881 PF14602 Hexapeptide repeat of succinyl-transferase V060002_02881 PF12464 Maltose acetyltransferase V060002_02882 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain V060002_02882 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain V060002_02882 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain V060002_02883 PF02350 UDP-N-acetylglucosamine 2-epimerase V060002_02885 PF01451 Low molecular weight phosphotyrosine protein phosphatase V060002_02886 PF00873 AcrB/AcrD/AcrF family V060002_02887 PF13533 Biotin-lipoyl like V060002_02892 PF16657 Maltogenic Amylase, C-terminal domain V060002_02892 PF00128 Alpha amylase, catalytic domain V060002_02893 PF00367 phosphotransferase system, EIIB V060002_02893 PF02378 Phosphotransferase system, EIIC V060002_02894 PF00356 Bacterial regulatory proteins, lacI family V060002_02896 PF09383 NIL domain V060002_02896 PF00005 ABC transporter V060002_02897 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02898 PF03180 NLPA lipoprotein V060002_02899 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) V060002_02900 PF07348 Syd protein (SUKH-2) V060002_02901 PF14489 QueF-like protein V060002_02901 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term V060002_02903 PF00990 Diguanylate cyclase, GGDEF domain V060002_02904 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases V060002_02904 PF11892 Domain of unknown function (DUF3412) V060002_02904 PF03641 Possible lysine decarboxylase V060002_02905 PF01367 5'-3' exonuclease, C-terminal SAM fold V060002_02905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V060002_02906 PF04241 Protein of unknown function (DUF423) V060002_02907 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02907 PF03466 LysR substrate binding domain V060002_02908 PF02926 THUMP domain V060002_02908 PF02568 Thiamine biosynthesis protein (ThiI) V060002_02909 PF13677 Membrane MotB of proton-channel complex MotA/MotB V060002_02909 PF00691 OmpA family V060002_02910 PF01618 MotA/TolQ/ExbB proton channel family V060002_02911 PF02609 Exonuclease VII small subunit V060002_02912 PF00348 Polyprenyl synthetase V060002_02913 PF02779 Transketolase, pyrimidine binding domain V060002_02913 PF02780 Transketolase, C-terminal domain V060002_02913 PF13292 1-deoxy-D-xylulose-5-phosphate synthase V060002_02914 PF00849 RNA pseudouridylate synthase V060002_02915 PF04287 tRNA pseudouridine synthase C V060002_02918 PF13302 Acetyltransferase (GNAT) domain V060002_02920 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 V060002_02921 PF03806 AbgT putative transporter family V060002_02922 PF00444 Ribosomal protein L36 V060002_02923 PF01197 Ribosomal protein L31 V060002_02924 PF01980 tRNA-methyltransferase O V060002_02924 PF18389 TrmO C-terminal domain V060002_02925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V060002_02925 PF03129 Anticodon binding domain V060002_02925 PF04073 Aminoacyl-tRNA editing domain V060002_02927 PF06786 Uncharacterised protein family (UPF0253) V060002_02929 PF01797 Transposase IS200 like V060002_02930 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal V060002_02930 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain V060002_02930 PF02769 AIR synthase related protein, C-terminal domain V060002_02931 PF01464 Transglycosylase SLT domain V060002_02931 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_02933 PF14437 MafB19-like deaminase V060002_02934 PF03806 AbgT putative transporter family V060002_02939 PF00114 Pilin (bacterial filament) V060002_02939 PF07963 Prokaryotic N-terminal methylation motif V060002_02940 PF00684 DnaJ central domain V060002_02940 PF00226 DnaJ domain V060002_02940 PF01556 DnaJ C terminal domain V060002_02941 PF00012 Hsp70 protein V060002_02942 PF01025 GrpE V060002_02943 PF01513 ATP-NAD kinase V060002_02944 PF02463 RecF/RecN/SMC N terminal domain V060002_02945 PF04355 SmpA / OmlA family V060002_02946 PF03658 RnfH family Ubiquitin V060002_02947 PF03364 Polyketide cyclase / dehydrase and lipid transport V060002_02948 PF01668 SmpB protein V060002_02950 PF13356 Arm DNA-binding domain V060002_02950 PF00589 Phage integrase family V060002_02951 PF13322 Domain of unknown function (DUF4092) V060002_02951 PF13402 Peptidase M60, enhancin and enhancin-like V060002_02951 PF17291 N-terminal domain of M60-like peptidases V060002_02953 PF01551 Peptidase family M23 V060002_02953 PF04225 Opacity-associated protein A LysM-like domain V060002_02957 PF02743 Cache domain V060002_02957 PF00672 HAMP domain V060002_02957 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02958 PF06750 Bacterial Peptidase A24 N-terminal domain V060002_02958 PF01478 Type IV leader peptidase family V060002_02959 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family V060002_02960 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F V060002_02961 PF00482 Type II secretion system (T2SS), protein F V060002_02962 PF00437 Type II/IV secretion system protein V060002_02963 PF17456 Toxin-coregulated pilus protein S V060002_02967 PF10671 Toxin co-regulated pilus biosynthesis protein Q V060002_02969 PF07963 Prokaryotic N-terminal methylation motif V060002_02969 PF05946 Toxin-coregulated pilus subunit TcpA V060002_02971 PF00486 Transcriptional regulatory protein, C terminal V060002_02972 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02973 PF08534 Redoxin V060002_02976 PF12561 ToxR activated gene A lipoprotein domain V060002_02976 PF00041 Fibronectin type III domain V060002_02977 PF00171 Aldehyde dehydrogenase family V060002_02989 PF00037 4Fe-4S binding domain V060002_02989 PF11953 Domain of unknown function (DUF3470) V060002_02990 PF00588 SpoU rRNA Methylase family V060002_02990 PF08032 RNA 2'-O ribose methyltransferase substrate binding V060002_02992 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase V060002_02993 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase V060002_02994 PF04223 Citrate lyase, alpha subunit (CitF) V060002_02995 PF03328 HpcH/HpaI aldolase/citrate lyase family V060002_02996 PF06857 Malonate decarboxylase delta subunit (MdcD) V060002_02997 PF08218 Citrate lyase ligase C-terminal domain V060002_02998 PF03390 2-hydroxycarboxylate transporter family V060002_02999 PF04277 Oxaloacetate decarboxylase, gamma chain V060002_03000 PF02436 Conserved carboxylase domain V060002_03000 PF00682 HMGL-like V060002_03000 PF00364 Biotin-requiring enzyme V060002_03001 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit V060002_03002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_03002 PF17203 Single cache domain 3 V060002_03003 PF00072 Response regulator receiver domain V060002_03003 PF12431 Transcriptional regulator V060002_03006 PF03466 LysR substrate binding domain V060002_03006 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03007 PF01266 FAD dependent oxidoreductase V060002_03008 PF01235 Sodium:alanine symporter family V060002_03009 PF00753 Metallo-beta-lactamase superfamily V060002_03009 PF14864 Alkyl sulfatase C-terminal V060002_03009 PF14863 Alkyl sulfatase dimerisation V060002_03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03010 PF03466 LysR substrate binding domain V060002_03011 PF01648 4'-phosphopantetheinyl transferase superfamily V060002_03011 PF17837 4'-phosphopantetheinyl transferase N-terminal domain V060002_03012 PF00005 ABC transporter V060002_03013 PF01032 FecCD transport family V060002_03014 PF01032 FecCD transport family V060002_03015 PF01497 Periplasmic binding protein V060002_03018 PF00425 chorismate binding enzyme V060002_03019 PF13193 AMP-binding enzyme C-terminal domain V060002_03019 PF00501 AMP-binding enzyme V060002_03020 PF00857 Isochorismatase family V060002_03020 PF00550 Phosphopantetheine attachment site V060002_03021 PF01184 GPR1/FUN34/yaaH family V060002_03022 PF06483 Chitinase C V060002_03022 PF00704 Glycosyl hydrolases family 18 V060002_03023 PF02540 NAD synthase V060002_03023 PF00958 GMP synthase C terminal domain V060002_03023 PF00117 Glutamine amidotransferase class-I V060002_03024 PF00571 CBS domain V060002_03024 PF00478 IMP dehydrogenase / GMP reductase domain V060002_03025 PF13742 OB-fold nucleic acid binding domain V060002_03025 PF02601 Exonuclease VII, large subunit V060002_03028 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal V060002_03028 PF01926 50S ribosome-binding GTPase V060002_03029 PF13360 PQQ-like domain V060002_03030 PF09976 Tetratricopeptide repeat-like domain V060002_03031 PF03129 Anticodon binding domain V060002_03031 PF13393 Histidyl-tRNA synthetase V060002_03032 PF04551 GcpE protein V060002_03033 PF13464 Domain of unknown function (DUF4115) V060002_03034 PF04055 Radical SAM superfamily V060002_03035 PF00334 Nucleoside diphosphate kinase V060002_03036 PF12404 Peptidase V060002_03036 PF00883 Cytosol aminopeptidase family, catalytic domain V060002_03037 PF04384 Iron-sulphur cluster assembly V060002_03038 PF00111 2Fe-2S iron-sulfur cluster binding domain V060002_03039 PF00012 Hsp70 protein V060002_03040 PF00226 DnaJ domain V060002_03040 PF07743 HSCB C-terminal oligomerisation domain V060002_03041 PF01521 Iron-sulphur cluster biosynthesis V060002_03042 PF01592 NifU-like N terminal domain V060002_03043 PF00266 Aminotransferase class-V V060002_03044 PF02082 Transcriptional regulator V060002_03045 PF00588 SpoU rRNA Methylase family V060002_03046 PF00459 Inositol monophosphatase family V060002_03047 PF02355 Protein export membrane protein V060002_03047 PF07549 SecD/SecF GG Motif V060002_03048 PF07549 SecD/SecF GG Motif V060002_03048 PF13721 SecD export protein N-terminal TM region V060002_03048 PF02355 Protein export membrane protein V060002_03049 PF02699 Preprotein translocase subunit V060002_03050 PF01702 Queuine tRNA-ribosyltransferase V060002_03051 PF02547 Queuosine biosynthesis protein V060002_03052 PF00571 CBS domain V060002_03053 PF00463 Isocitrate lyase family V060002_03054 PF01274 Malate synthase V060002_03055 PF03466 LysR substrate binding domain V060002_03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03056 PF00578 AhpC/TSA family V060002_03056 PF10417 C-terminal domain of 1-Cys peroxiredoxin V060002_03057 PF03932 CutC family V060002_03058 PF03976 Polyphosphate kinase 2 (PPK2) V060002_03059 PF01895 PhoU domain V060002_03060 PF00005 ABC transporter V060002_03061 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03062 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03063 PF02503 Polyphosphate kinase middle domain V060002_03063 PF13090 Polyphosphate kinase C-terminal domain 2 V060002_03063 PF17941 Polyphosphate kinase C-terminal domain 1 V060002_03063 PF13089 Polyphosphate kinase N-terminal domain V060002_03064 PF02541 Ppx/GppA phosphatase family V060002_03065 PF12849 PBP superfamily domain V060002_03066 PF11808 Phosphate regulon sensor protein PhoR V060002_03066 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_03066 PF00989 PAS fold V060002_03066 PF00512 His Kinase A (phospho-acceptor) domain V060002_03067 PF00072 Response regulator receiver domain V060002_03067 PF00486 Transcriptional regulatory protein, C terminal V060002_03068 PF04381 Putative exonuclease, RdgC V060002_03070 PF00037 4Fe-4S binding domain V060002_03071 PF00881 Nitroreductase family V060002_03078 PF17871 AAA lid domain V060002_03078 PF02861 Clp amino terminal domain, pathogenicity island component V060002_03078 PF07724 AAA domain (Cdc48 subfamily) V060002_03078 PF00004 ATPase family associated with various cellular activities (AAA) V060002_03078 PF10431 C-terminal, D2-small domain, of ClpB protein V060002_03080 PF01479 S4 domain V060002_03080 PF00849 RNA pseudouridylate synthase V060002_03081 PF13525 Outer membrane lipoprotein V060002_03082 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V060002_03083 PF00800 Prephenate dehydratase V060002_03083 PF01817 Chorismate mutase type II V060002_03084 PF13416 Bacterial extracellular solute-binding protein V060002_03085 PF00990 Diguanylate cyclase, GGDEF domain V060002_03085 PF00563 EAL domain V060002_03086 PF01931 Protein of unknown function DUF84 V060002_03087 PF01371 Trp repressor protein V060002_03088 PF14718 Soluble lytic murein transglycosylase L domain V060002_03088 PF01464 Transglycosylase SLT domain V060002_03089 PF12848 ABC transporter V060002_03089 PF00005 ABC transporter V060002_03090 PF07238 PilZ domain V060002_03091 PF01817 Chorismate mutase type II V060002_03091 PF02153 Prephenate dehydrogenase V060002_03092 PF00793 DAHP synthetase I family V060002_03093 PF06580 Histidine kinase V060002_03093 PF07694 5TMR of 5TMR-LYT V060002_03094 PF00072 Response regulator receiver domain V060002_03094 PF04397 LytTr DNA-binding domain V060002_03095 PF00933 Glycosyl hydrolase family 3 N terminal domain V060002_03096 PF03702 Anhydro-N-acetylmuramic acid kinase V060002_03097 PF13580 SIS domain V060002_03101 PF02554 Carbon starvation protein CstA V060002_03102 PF02401 LytB protein V060002_03103 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V060002_03104 PF01252 Signal peptidase (SPase) II V060002_03105 PF06827 Zinc finger found in FPG and IleRS V060002_03105 PF00133 tRNA synthetases class I (I, L, M and V) V060002_03105 PF08264 Anticodon-binding domain of tRNA V060002_03106 PF01687 Riboflavin kinase V060002_03106 PF06574 FAD synthetase V060002_03107 PF03023 Lipid II flippase MurJ V060002_03108 PF01649 Ribosomal protein S20 V060002_03109 PF01022 Bacterial regulatory protein, arsR family V060002_03110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03110 PF03466 LysR substrate binding domain V060002_03111 PF02690 Na+/Pi-cotransporter V060002_03112 PF00303 Thymidylate synthase V060002_03113 PF01790 Prolipoprotein diacylglyceryl transferase V060002_03114 PF01925 Sulfite exporter TauE/SafE V060002_03115 PF00391 PEP-utilising enzyme, mobile domain V060002_03115 PF05524 PEP-utilising enzyme, N-terminal V060002_03115 PF01590 GAF domain V060002_03115 PF02896 PEP-utilising enzyme, TIM barrel domain V060002_03116 PF00293 NUDIX domain V060002_03117 PF02976 DNA mismatch repair enzyme MutH V060002_03118 PF00248 Aldo/keto reductase family V060002_03120 PF00158 Sigma-54 interaction domain V060002_03120 PF00072 Response regulator receiver domain V060002_03120 PF02954 Bacterial regulatory protein, Fis family V060002_03121 PF00152 tRNA synthetases class II (D, K and N) V060002_03121 PF01336 OB-fold nucleic acid binding domain V060002_03122 PF03462 PCRF domain V060002_03122 PF00472 RF-1 domain V060002_03123 PF05525 Branched-chain amino acid transport protein V060002_03124 PF05175 Methyltransferase small domain V060002_03125 PF00271 Helicase conserved C-terminal domain V060002_03125 PF00270 DEAD/DEAH box helicase V060002_03126 PF16658 Class II release factor RF3, C-terminal domain V060002_03126 PF03144 Elongation factor Tu domain 2 V060002_03126 PF00009 Elongation factor Tu GTP binding domain V060002_03127 PF03707 Bacterial signalling protein N terminal repeat V060002_03127 PF00990 Diguanylate cyclase, GGDEF domain V060002_03127 PF00563 EAL domain V060002_03130 PF13508 Acetyltransferase (GNAT) domain V060002_03132 PF00563 EAL domain V060002_03132 PF00990 Diguanylate cyclase, GGDEF domain V060002_03132 PF03707 Bacterial signalling protein N terminal repeat V060002_03138 PF13181 Tetratricopeptide repeat V060002_03138 PF07719 Tetratricopeptide repeat V060002_03139 PF00575 S1 RNA binding domain V060002_03139 PF03725 3' exoribonuclease family, domain 2 V060002_03139 PF00013 KH domain V060002_03139 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain V060002_03139 PF01138 3' exoribonuclease family, domain 1 V060002_03140 PF00312 Ribosomal protein S15 V060002_03141 PF09157 Pseudouridine synthase II TruB, C-terminal V060002_03141 PF16198 tRNA pseudouridylate synthase B C-terminal domain V060002_03141 PF01509 TruB family pseudouridylate synthase (N terminal domain) V060002_03142 PF02033 Ribosome-binding factor A V060002_03143 PF04760 Translation initiation factor IF-2, N-terminal region V060002_03143 PF08364 Bacterial translation initiation factor IF-2 associated region V060002_03143 PF11987 Translation-initiation factor 2 V060002_03143 PF00009 Elongation factor Tu GTP binding domain V060002_03144 PF00575 S1 RNA binding domain V060002_03144 PF08529 NusA N-terminal domain V060002_03144 PF13184 NusA-like KH domain V060002_03145 PF02576 RimP N-terminal domain V060002_03145 PF17384 RimP C-terminal SH3 domain V060002_03148 PF03840 Preprotein translocase SecG subunit V060002_03150 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V060002_03150 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V060002_03150 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V060002_03150 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V060002_03151 PF00809 Pterin binding enzyme V060002_03152 PF17862 AAA+ lid domain V060002_03152 PF06480 FtsH Extracellular V060002_03152 PF01434 Peptidase family M41 V060002_03152 PF00004 ATPase family associated with various cellular activities (AAA) V060002_03153 PF01728 FtsJ-like methyltransferase V060002_03154 PF01985 CRS1 / YhbY (CRM) domain V060002_03155 PF01272 Transcription elongation factor, GreA/GreB, C-term V060002_03155 PF03449 Transcription elongation factor, N-terminal V060002_03156 PF13609 Gram-negative porin V060002_03157 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family V060002_03158 PF01479 S4 domain V060002_03158 PF00579 tRNA synthetases class I (W and Y) V060002_03159 PF04225 Opacity-associated protein A LysM-like domain V060002_03159 PF01551 Peptidase family M23 V060002_03160 PF00873 AcrB/AcrD/AcrF family V060002_03162 PF01521 Iron-sulphur cluster biosynthesis V060002_03163 PF00202 Aminotransferase class-III V060002_03165 PF01594 AI-2E family transporter V060002_03166 PF05175 Methyltransferase small domain V060002_03166 PF08468 Methyltransferase small domain N-terminal V060002_03167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_03167 PF00512 His Kinase A (phospho-acceptor) domain V060002_03167 PF09308 LuxQ, periplasmic V060002_03167 PF00072 Response regulator receiver domain V060002_03168 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_03169 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03170 PF12911 N-terminal TM domain of oligopeptide transport permease C V060002_03170 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03171 PF00005 ABC transporter V060002_03171 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_03172 PF00005 ABC transporter V060002_03172 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_03174 PF01869 BadF/BadG/BcrA/BcrD ATPase family V060002_03175 PF02838 Glycosyl hydrolase family 20, domain 2 V060002_03175 PF00728 Glycosyl hydrolase family 20, catalytic domain V060002_03176 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain V060002_03176 PF06165 Glycosyltransferase family 36 V060002_03177 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V060002_03177 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V060002_03177 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V060002_03177 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V060002_03178 PF00005 ABC transporter V060002_03178 PF08402 TOBE domain V060002_03180 PF13416 Bacterial extracellular solute-binding protein V060002_03181 PF00909 Ammonium Transporter Family V060002_03182 PF00543 Nitrogen regulatory protein P-II V060002_03183 PF06062 Uncharacterised protein family (UPF0231) V060002_03184 PF06434 Aconitate hydratase 2 N-terminus V060002_03184 PF00330 Aconitase family (aconitate hydratase) V060002_03184 PF11791 Aconitate B N-terminal domain V060002_03185 PF01734 Patatin-like phospholipase V060002_03186 PF14814 Bifunctional transglycosylase second domain V060002_03186 PF00905 Penicillin binding protein transpeptidase domain V060002_03186 PF00912 Transglycosylase V060002_03187 PF04408 Helicase associated domain (HA2) V060002_03187 PF00270 DEAD/DEAH box helicase V060002_03187 PF00271 Helicase conserved C-terminal domain V060002_03187 PF08482 ATP-dependent helicase C-terminal V060002_03189 PF03749 Sugar fermentation stimulation protein RE domain V060002_03189 PF17746 SfsA N-terminal OB domain V060002_03190 PF01258 Prokaryotic dksA/traR C4-type zinc finger V060002_03191 PF00749 tRNA synthetases class I (E and Q), catalytic domain V060002_03192 PF01743 Poly A polymerase head domain V060002_03192 PF12626 Polymerase A arginine-rich C-terminus V060002_03192 PF12627 Probable RNA and SrmB- binding site of polymerase A V060002_03193 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V060002_03194 PF02548 Ketopantoate hydroxymethyltransferase V060002_03195 PF02569 Pantoate-beta-alanine ligase V060002_03196 PF01061 ABC-2 type transporter V060002_03197 PF00005 ABC transporter V060002_03198 PF01740 STAS domain V060002_03198 PF00916 Sulfate permease family V060002_03199 PF00484 Carbonic anhydrase V060002_03200 PF00156 Phosphoribosyl transferase domain V060002_03201 PF00440 Bacterial regulatory proteins, tetR family V060002_03202 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V060002_03203 PF04348 LppC putative lipoprotein V060002_03204 PF02021 Uncharacterised protein family UPF0102 V060002_03205 PF13580 SIS domain V060002_03206 PF04972 BON domain V060002_03207 PF04386 Stringent starvation protein B V060002_03208 PF00043 Glutathione S-transferase, C-terminal domain V060002_03208 PF02798 Glutathione S-transferase, N-terminal domain V060002_03209 PF02167 Cytochrome C1 family V060002_03210 PF00033 Cytochrome b/b6/petB V060002_03210 PF00032 Cytochrome b(C-terminal)/b6/petD V060002_03211 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal V060002_03211 PF00355 Rieske [2Fe-2S] domain V060002_03212 PF00380 Ribosomal protein S9/S16 V060002_03213 PF00572 Ribosomal protein L13 V060002_03214 PF03969 AFG1-like ATPase V060002_03216 PF00595 PDZ domain V060002_03217 PF13180 PDZ domain V060002_03218 PF01245 Ribosomal protein L19 V060002_03219 PF01746 tRNA (Guanine-1)-methyltransferase V060002_03220 PF05239 PRC-barrel domain V060002_03220 PF01782 RimM N-terminal domain V060002_03221 PF00886 Ribosomal protein S16 V060002_03222 PF00448 SRP54-type protein, GTPase domain V060002_03222 PF02881 SRP54-type protein, helical bundle domain V060002_03222 PF02978 Signal peptide binding domain V060002_03223 PF01578 Cytochrome C assembly protein V060002_03224 PF03471 Transporter associated domain V060002_03224 PF01595 Cyclin M transmembrane N-terminal domain V060002_03224 PF00571 CBS domain V060002_03225 PF02664 S-Ribosylhomocysteinase (LuxS) V060002_03226 PF04262 Glutamate-cysteine ligase V060002_03227 PF05193 Peptidase M16 inactive domain V060002_03227 PF00675 Insulinase (Peptidase family M16) V060002_03228 PF09335 SNARE associated Golgi protein V060002_03230 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit V060002_03231 PF00364 Biotin-requiring enzyme V060002_03231 PF02436 Conserved carboxylase domain V060002_03231 PF00682 HMGL-like V060002_03232 PF04277 Oxaloacetate decarboxylase, gamma chain V060002_03241 PF02599 Global regulator protein family V060002_03242 PF13840 ACT domain V060002_03242 PF00696 Amino acid kinase family V060002_03242 PF01842 ACT domain V060002_03243 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V060002_03243 PF01411 tRNA synthetases class II (A) V060002_03243 PF02272 DHHA1 domain V060002_03244 PF02631 RecX family V060002_03245 PF00154 recA bacterial DNA recombination protein V060002_03246 PF02464 Competence-damaged protein V060002_03247 PF00005 ABC transporter V060002_03247 PF12857 TOBE-like domain V060002_03248 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03249 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03251 PF00291 Pyridoxal-phosphate dependent enzyme V060002_03252 PF00488 MutS domain V V060002_03252 PF05188 MutS domain II V060002_03252 PF01624 MutS domain I V060002_03252 PF05190 MutS family domain IV V060002_03252 PF05192 MutS domain III V060002_03253 PF04539 Sigma-70 region 3 V060002_03253 PF04545 Sigma-70, region 4 V060002_03253 PF04542 Sigma-70 region 2 V060002_03253 PF00140 Sigma-70 factor, region 1.2 V060002_03254 PF01476 LysM domain V060002_03254 PF01551 Peptidase family M23 V060002_03256 PF01975 Survival protein SurE V060002_03257 PF01142 tRNA pseudouridine synthase D (TruD) V060002_03258 PF02542 YgbB family V060002_03259 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase V060002_03260 PF04977 Septum formation initiator V060002_03261 PF02673 Bacitracin resistance protein BacA V060002_03262 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V060002_03263 PF02152 Dihydroneopterin aldolase V060002_03264 PF02660 Glycerol-3-phosphate acyltransferase V060002_03265 PF00561 alpha/beta hydrolase fold V060002_03266 PF00814 Glycoprotease family V060002_03267 PF01165 Ribosomal protein S21 V060002_03268 PF09424 Yqey-like protein V060002_03269 PF01807 CHC2 zinc finger V060002_03269 PF10410 DnaB-helicase binding domain of primase V060002_03269 PF08278 DNA primase DnaG DnaB-binding V060002_03269 PF08275 DNA primase catalytic core, N-terminal domain V060002_03270 PF04545 Sigma-70, region 4 V060002_03270 PF04539 Sigma-70 region 3 V060002_03270 PF04542 Sigma-70 region 2 V060002_03270 PF00140 Sigma-70 factor, region 1.2 V060002_03270 PF04546 Sigma-70, non-essential region V060002_03270 PF03979 Sigma-70 factor, region 1.1 V060002_03272 PF00589 Phage integrase family V060002_03272 PF13356 Arm DNA-binding domain V060002_03273 PF08668 HDOD domain V060002_03273 PF00563 EAL domain V060002_03274 PF17200 Single Cache domain 2 V060002_03274 PF00672 HAMP domain V060002_03274 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_03275 PF12833 Helix-turn-helix domain V060002_03276 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_03276 PF08447 PAS fold V060002_03278 PF04002 RadC-like JAB domain V060002_03284 PF01476 LysM domain V060002_03284 PF08525 Opacity-associated protein A N-terminal motif V060002_03284 PF01551 Peptidase family M23 V060002_03285 PF07963 Prokaryotic N-terminal methylation motif V060002_03285 PF00114 Pilin (bacterial filament) V060002_03286 PF13737 Transposase DDE domain V060002_03287 PF01527 Transposase V060002_03288 PF00665 Integrase core domain V060002_03289 PF00075 RNase H V060002_03299 PF03480 Bacterial extracellular solute-binding protein, family 7 V060002_03300 PF01380 SIS domain V060002_03301 PF08220 DeoR-like helix-turn-helix domain V060002_03301 PF00455 DeoR C terminal sensor domain V060002_03302 PF02887 Pyruvate kinase, alpha/beta domain V060002_03302 PF00224 Pyruvate kinase, barrel domain V060002_03304 PF04402 Protein of unknown function (DUF541) V060002_03305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03305 PF03466 LysR substrate binding domain V060002_03306 PF01810 LysE type translocator V060002_03307 PF05552 Conserved TM helix V060002_03307 PF00924 Mechanosensitive ion channel V060002_03308 PF01116 Fructose-bisphosphate aldolase class-II V060002_03309 PF00162 Phosphoglycerate kinase V060002_03310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V060002_03310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V060002_03311 PF07715 TonB-dependent Receptor Plug Domain V060002_03311 PF00593 TonB dependent receptor V060002_03312 PF03466 LysR substrate binding domain V060002_03312 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03313 PF02779 Transketolase, pyrimidine binding domain V060002_03313 PF00456 Transketolase, thiamine diphosphate binding domain V060002_03313 PF02780 Transketolase, C-terminal domain V060002_03314 PF02773 S-adenosylmethionine synthetase, C-terminal domain V060002_03314 PF02772 S-adenosylmethionine synthetase, central domain V060002_03314 PF00438 S-adenosylmethionine synthetase, N-terminal domain V060002_03315 PF17283 SprT-like zinc ribbon domain V060002_03315 PF10263 SprT-like family V060002_03316 PF04231 Endonuclease I V060002_03317 PF04452 RNA methyltransferase V060002_03318 PF02951 Prokaryotic glutathione synthetase, N-terminal domain V060002_03318 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain V060002_03319 PF02622 Uncharacterized ACR, COG1678 V060002_03320 PF03652 Holliday junction resolvase V060002_03321 PF00579 tRNA synthetases class I (W and Y) V060002_03321 PF01479 S4 domain V060002_03323 PF00437 Type II/IV secretion system protein V060002_03324 PF00437 Type II/IV secretion system protein V060002_03325 PF01168 Alanine racemase, N-terminal domain V060002_03326 PF03807 NADP oxidoreductase coenzyme F420-dependent V060002_03326 PF14748 Pyrroline-5-carboxylate reductase dimerisation V060002_03327 PF02325 YGGT family V060002_03328 PF02594 Uncharacterised ACR, YggU family COG1872 V060002_03330 PF01725 Ham1 family V060002_03331 PF04055 Radical SAM superfamily V060002_03331 PF06969 HemN C-terminal domain V060002_03332 PF04960 Glutaminase V060002_03333 PF02390 Putative methyltransferase V060002_03334 PF00730 HhH-GPD superfamily base excision DNA repair protein V060002_03334 PF00633 Helix-hairpin-helix motif V060002_03334 PF10576 Iron-sulfur binding domain of endonuclease III V060002_03334 PF14815 NUDIX domain V060002_03335 PF04362 Bacterial Fe(2+) trafficking V060002_03336 PF01464 Transglycosylase SLT domain V060002_03336 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain V060002_03341 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_03341 PF00672 HAMP domain V060002_03341 PF12729 Four helix bundle sensory module for signal transduction V060002_03347 PF00226 DnaJ domain V060002_03347 PF05099 Tellurite resistance protein TerB V060002_03348 PF04453 LPS transport system D V060002_03348 PF03968 OstA-like protein V060002_03349 PF09312 SurA N-terminal domain V060002_03350 PF04166 Pyridoxal phosphate biosynthetic protein PdxA V060002_03351 PF00398 Ribosomal RNA adenine dimethylase V060002_03352 PF04379 ApaG domain V060002_03353 PF00149 Calcineurin-like phosphoesterase V060002_03354 PF00186 Dihydrofolate reductase V060002_03355 PF12821 Threonine/Serine exporter, ThrE V060002_03356 PF06738 Putative threonine/serine exporter V060002_03357 PF01926 50S ribosome-binding GTPase V060002_03357 PF01018 GTP1/OBG V060002_03358 PF01016 Ribosomal L27 protein V060002_03359 PF00829 Ribosomal prokaryotic L21 protein V060002_03360 PF00348 Polyprenyl synthetase V060002_03361 PF13520 Amino acid permease V060002_03362 PF13520 Amino acid permease V060002_03363 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain V060002_03363 PF00056 lactate/malate dehydrogenase, NAD binding domain V060002_03364 PF01316 Arginine repressor, DNA binding domain V060002_03364 PF02863 Arginine repressor, C-terminal domain V060002_03365 PF16868 NMT1-like family V060002_03367 PF00582 Universal stress protein family V060002_03370 PF06877 Regulator of ribonuclease activity B V060002_03372 PF01523 Putative modulator of DNA gyrase V060002_03373 PF00795 Carbon-nitrogen hydrolase V060002_03374 PF13502 AsmA-like C-terminal region V060002_03374 PF13116 Protein of unknown function V060002_03375 PF00575 S1 RNA binding domain V060002_03375 PF10150 Ribonuclease E/G family V060002_03376 PF02545 Maf-like protein V060002_03377 PF04093 rod shape-determining protein MreD V060002_03378 PF04085 rod shape-determining protein MreC V060002_03385 PF00114 Pilin (bacterial filament) V060002_03385 PF07963 Prokaryotic N-terminal methylation motif V060002_03388 PF00482 Type II secretion system (T2SS), protein F V060002_03389 PF00437 Type II/IV secretion system protein V060002_03391 PF13401 AAA domain V060002_03391 PF01471 Putative peptidoglycan binding domain V060002_03392 PF07660 Secretin and TonB N terminus short domain V060002_03392 PF00263 Bacterial type II and III secretion system protein V060002_03392 PF03958 Bacterial type II/III secretion system short domain V060002_03392 PF11741 AMIN domain V060002_03396 PF00990 Diguanylate cyclase, GGDEF domain V060002_03396 PF17157 Gammaproteobacterial periplasmic sensor domain V060002_03396 PF00563 EAL domain V060002_03397 PF00436 Single-strand binding protein family V060002_03398 PF00196 Bacterial regulatory proteins, luxR family V060002_03399 PF00483 Nucleotidyl transferase V060002_03400 PF17755 UvrA DNA-binding domain V060002_03400 PF00005 ABC transporter V060002_03400 PF17760 UvrA interaction domain V060002_03402 PF00266 Aminotransferase class-V V060002_03403 PF00696 Amino acid kinase family V060002_03403 PF01842 ACT domain V060002_03404 PF02574 Homocysteine S-methyltransferase V060002_03404 PF02310 B12 binding domain V060002_03404 PF02607 B12 binding domain V060002_03404 PF02965 Vitamin B12 dependent methionine synthase, activation domain V060002_03404 PF00809 Pterin binding enzyme V060002_03405 PF00999 Sodium/hydrogen exchanger family V060002_03418 PF01507 Phosphoadenosine phosphosulfate reductase family V060002_03419 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V060002_03419 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V060002_03420 PF00258 Flavodoxin V060002_03420 PF00667 FAD binding domain V060002_03420 PF00175 Oxidoreductase NAD-binding domain V060002_03423 PF09583 Phage shock protein G (Phageshock_PspG) V060002_03424 PF01207 Dihydrouridine synthase (Dus) V060002_03425 PF01475 Ferric uptake regulator family V060002_03427 PF12706 Beta-lactamase superfamily domain V060002_03428 PF00342 Phosphoglucose isomerase V060002_03429 PF01894 Uncharacterised protein family UPF0047 V060002_03430 PF00842 Alanine racemase, C-terminal domain V060002_03430 PF01168 Alanine racemase, N-terminal domain V060002_03431 PF03796 DnaB-like helicase C terminal domain V060002_03431 PF00772 DnaB-like helicase N terminal domain V060002_03433 PF03948 Ribosomal protein L9, C-terminal domain V060002_03433 PF01281 Ribosomal protein L9, N-terminal domain V060002_03434 PF01084 Ribosomal protein S18 V060002_03435 PF00436 Single-strand binding protein family V060002_03436 PF01250 Ribosomal protein S6 V060002_03437 PF00210 Ferritin-like domain V060002_03438 PF04324 BFD-like [2Fe-2S] binding domain V060002_03439 PF00009 Elongation factor Tu GTP binding domain V060002_03439 PF03143 Elongation factor Tu C-terminal domain V060002_03439 PF03144 Elongation factor Tu domain 2 V060002_03440 PF03144 Elongation factor Tu domain 2 V060002_03440 PF03764 Elongation factor G, domain IV V060002_03440 PF14492 Elongation Factor G, domain II V060002_03440 PF00009 Elongation factor Tu GTP binding domain V060002_03440 PF00679 Elongation factor G C-terminus V060002_03441 PF00177 Ribosomal protein S7p/S5e V060002_03442 PF00164 Ribosomal protein S12/S23 V060002_03444 PF02635 DsrE/DsrF-like family V060002_03445 PF02635 DsrE/DsrF-like family V060002_03446 PF13309 HTH domain V060002_03446 PF08348 YheO-like PAS domain V060002_03447 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V060002_03447 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V060002_03449 PF04102 SlyX V060002_03450 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) V060002_03451 PF01145 SPFH domain / Band 7 family V060002_03452 PF12221 Bacterial membrane protein N terminal V060002_03452 PF01145 SPFH domain / Band 7 family V060002_03453 PF01926 50S ribosome-binding GTPase V060002_03453 PF16360 GTP-binding GTPase Middle Region V060002_03453 PF13167 GTP-binding GTPase N-terminal V060002_03454 PF17209 Hfq protein V060002_03456 PF08676 MutL C terminal dimerisation domain V060002_03456 PF01119 DNA mismatch repair protein, C-terminal domain V060002_03457 PF01520 N-acetylmuramoyl-L-alanine amidase V060002_03458 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE V060002_03459 PF08331 Domain of unknown function (DUF1730) V060002_03465 PF00929 Exonuclease V060002_03466 PF03193 RsgA GTPase V060002_03467 PF02666 Phosphatidylserine decarboxylase V060002_03468 PF00939 Sodium:sulfate symporter transmembrane region V060002_03470 PF06415 BPG-independent PGAM N-terminus (iPGM_N) V060002_03470 PF01676 Metalloenzyme superfamily V060002_03471 PF01551 Peptidase family M23 V060002_03473 PF08360 QacR-like protein, C-terminal region V060002_03473 PF00440 Bacterial regulatory proteins, tetR family V060002_03474 PF01208 Uroporphyrinogen decarboxylase (URO-D) V060002_03475 PF00293 NUDIX domain V060002_03475 PF09297 NADH pyrophosphatase zinc ribbon domain V060002_03476 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ V060002_03477 PF04998 RNA polymerase Rpb1, domain 5 V060002_03477 PF05000 RNA polymerase Rpb1, domain 4 V060002_03477 PF04997 RNA polymerase Rpb1, domain 1 V060002_03477 PF00623 RNA polymerase Rpb1, domain 2 V060002_03477 PF04983 RNA polymerase Rpb1, domain 3 V060002_03478 PF04565 RNA polymerase Rpb2, domain 3 V060002_03478 PF04560 RNA polymerase Rpb2, domain 7 V060002_03478 PF04561 RNA polymerase Rpb2, domain 2 V060002_03478 PF10385 RNA polymerase beta subunit external 1 domain V060002_03478 PF04563 RNA polymerase beta subunit V060002_03478 PF00562 RNA polymerase Rpb2, domain 6 V060002_03479 PF16320 Ribosomal protein L7/L12 dimerisation domain V060002_03479 PF00542 Ribosomal protein L7/L12 C-terminal domain V060002_03480 PF00466 Ribosomal protein L10 V060002_03481 PF00687 Ribosomal protein L1p/L10e family V060002_03482 PF00298 Ribosomal protein L11, RNA binding domain V060002_03482 PF03946 Ribosomal protein L11, N-terminal domain V060002_03483 PF00467 KOW motif V060002_03483 PF02357 Transcription termination factor nusG V060002_03484 PF00584 SecE/Sec61-gamma subunits of protein translocation complex V060002_03485 PF03144 Elongation factor Tu domain 2 V060002_03485 PF00009 Elongation factor Tu GTP binding domain V060002_03485 PF03143 Elongation factor Tu C-terminal domain V060002_03490 PF00485 Phosphoribulokinase / Uridine kinase family V060002_03491 PF08279 HTH domain V060002_03491 PF02237 Biotin protein ligase C terminal domain V060002_03491 PF03099 Biotin/lipoate A/B protein ligase family V060002_03492 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain V060002_03492 PF01565 FAD binding domain V060002_03494 PF13091 PLD-like domain V060002_03501 PF00175 Oxidoreductase NAD-binding domain V060002_03502 PF00970 Oxidoreductase FAD-binding domain V060002_03502 PF00175 Oxidoreductase NAD-binding domain V060002_03502 PF00111 2Fe-2S iron-sulfur cluster binding domain V060002_03503 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase V060002_03505 PF07498 Rho termination factor, N-terminal domain V060002_03505 PF07497 Rho termination factor, RNA-binding domain V060002_03505 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V060002_03506 PF00085 Thioredoxin V060002_03507 PF00270 DEAD/DEAH box helicase V060002_03507 PF00271 Helicase conserved C-terminal domain V060002_03508 PF02541 Ppx/GppA phosphatase family V060002_03509 PF09456 RcsC Alpha-Beta-Loop (ABL) V060002_03509 PF00072 Response regulator receiver domain V060002_03509 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_03509 PF00512 His Kinase A (phospho-acceptor) domain V060002_03510 PF12832 MFS_1 like family V060002_03513 PF13193 AMP-binding enzyme C-terminal domain V060002_03513 PF00501 AMP-binding enzyme V060002_03513 PF16177 Acetyl-coenzyme A synthetase N-terminus V060002_03514 PF01220 Dehydroquinase class II V060002_03515 PF00364 Biotin-requiring enzyme V060002_03516 PF00289 Biotin carboxylase, N-terminal domain V060002_03516 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V060002_03516 PF02785 Biotin carboxylase C-terminal domain V060002_03518 PF01207 Dihydrouridine synthase (Dus) V060002_03519 PF02954 Bacterial regulatory protein, Fis family V060002_03520 PF00356 Bacterial regulatory proteins, lacI family V060002_03520 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V060002_03521 PF00920 Dehydratase family V060002_03522 PF01202 Shikimate kinase V060002_03523 PF02447 GntP family permease V060002_03524 PF01081 KDPG and KHG aldolase V060002_03525 PF07715 TonB-dependent Receptor Plug Domain V060002_03525 PF00593 TonB dependent receptor V060002_03528 PF17200 Single Cache domain 2 V060002_03528 PF00672 HAMP domain V060002_03528 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_03529 PF01276 Orn/Lys/Arg decarboxylase, major domain V060002_03529 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain V060002_03529 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain V060002_03530 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V060002_03543 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V060002_03543 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_03544 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ V060002_03545 PF01432 Peptidase family M3 V060002_03546 PF13361 UvrD-like helicase C-terminal domain V060002_03546 PF00580 UvrD/REP helicase N-terminal domain V060002_03547 PF01810 LysE type translocator V060002_03548 PF12833 Helix-turn-helix domain V060002_03550 PF00892 EamA-like transporter family V060002_03551 PF09382 RQC domain V060002_03551 PF00270 DEAD/DEAH box helicase V060002_03551 PF16124 RecQ zinc-binding V060002_03551 PF00570 HRDC domain V060002_03551 PF00271 Helicase conserved C-terminal domain V060002_03554 PF00664 ABC transporter transmembrane region V060002_03554 PF00005 ABC transporter V060002_03555 PF07715 TonB-dependent Receptor Plug Domain V060002_03555 PF00593 TonB dependent receptor V060002_03556 PF00005 ABC transporter V060002_03557 PF01497 Periplasmic binding protein V060002_03558 PF01032 FecCD transport family V060002_03559 PF01418 Helix-turn-helix domain, rpiR family V060002_03559 PF01380 SIS domain V060002_03560 PF13580 SIS domain V060002_03561 PF00367 phosphotransferase system, EIIB V060002_03561 PF02378 Phosphotransferase system, EIIC V060002_03562 PF03350 Uncharacterized protein family, UPF0114 V060002_03563 PF08340 Domain of unknown function (DUF1732) V060002_03563 PF03755 YicC-like family, N-terminal region V060002_03564 PF03725 3' exoribonuclease family, domain 2 V060002_03564 PF01138 3' exoribonuclease family, domain 1 V060002_03565 PF00156 Phosphoribosyl transferase domain V060002_03566 PF03279 Bacterial lipid A biosynthesis acyltransferase V060002_03567 PF03279 Bacterial lipid A biosynthesis acyltransferase V060002_03568 PF00440 Bacterial regulatory proteins, tetR family V060002_03569 PF02441 Flavoprotein V060002_03569 PF04127 DNA / pantothenate metabolism flavoprotein V060002_03570 PF00672 HAMP domain V060002_03570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_03571 PF04002 RadC-like JAB domain V060002_03572 PF00830 Ribosomal L28 family V060002_03573 PF00471 Ribosomal protein L33 V060002_03575 PF06827 Zinc finger found in FPG and IleRS V060002_03575 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain V060002_03575 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain V060002_03576 PF01467 Cytidylyltransferase-like V060002_03577 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V060002_03578 PF00535 Glycosyl transferase family 2 V060002_03579 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V060002_03586 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) V060002_03587 PF04488 Glycosyltransferase sugar-binding region containing DXD motif V060002_03589 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V060002_03592 PF01522 Polysaccharide deacetylase V060002_03592 PF00457 Glycosyl hydrolases family 11 V060002_03593 PF01370 NAD dependent epimerase/dehydratase family V060002_03594 PF00483 Nucleotidyl transferase V060002_03594 PF01050 Mannose-6-phosphate isomerase V060002_03595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V060002_03595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V060002_03595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V060002_03595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V060002_03596 PF16363 GDP-mannose 4,6 dehydratase V060002_03597 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V060002_03600 PF00005 ABC transporter V060002_03600 PF14524 Wzt C-terminal domain V060002_03602 PF13193 AMP-binding enzyme C-terminal domain V060002_03602 PF00501 AMP-binding enzyme V060002_03603 PF00171 Aldehyde dehydrogenase family V060002_03603 PF00465 Iron-containing alcohol dehydrogenase V060002_03605 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_03606 PF13808 DDE_Tnp_1-associated V060002_03606 PF01609 Transposase DDE domain V060002_03607 PF13808 DDE_Tnp_1-associated V060002_03607 PF01609 Transposase DDE domain V060002_03610 PF02719 Polysaccharide biosynthesis protein V060002_03611 PF01370 NAD dependent epimerase/dehydratase family V060002_03612 PF02397 Bacterial sugar transferase V060002_03613 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain V060002_03613 PF00753 Metallo-beta-lactamase superfamily V060002_03613 PF10996 Beta-Casp domain V060002_03614 PF00924 Mechanosensitive ion channel V060002_03615 PF03167 Uracil DNA glycosylase superfamily V060002_03616 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V060002_03617 PF04222 Protein of unknown function (DUF416) V060002_03618 PF01238 Phosphomannose isomerase type I V060002_03619 PF00480 ROK family V060002_03620 PF01595 Cyclin M transmembrane N-terminal domain V060002_03620 PF00571 CBS domain V060002_03621 PF00216 Bacterial DNA-binding protein V060002_03623 PF02844 Phosphoribosylglycinamide synthetase, N domain V060002_03623 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain V060002_03623 PF02843 Phosphoribosylglycinamide synthetase, C domain V060002_03624 PF02142 MGS-like domain V060002_03624 PF01808 AICARFT/IMPCHase bienzyme V060002_03625 PF13411 MerR HTH family regulatory protein V060002_03626 PF18500 CadC C-terminal domain 1 V060002_03626 PF00486 Transcriptional regulatory protein, C terminal V060002_03627 PF13520 Amino acid permease V060002_03628 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain V060002_03628 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain V060002_03628 PF01276 Orn/Lys/Arg decarboxylase, major domain V060002_03641 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V060002_03643 PF12911 N-terminal TM domain of oligopeptide transport permease C V060002_03643 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_03646 PF00005 ABC transporter V060002_03646 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_03652 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V060002_03653 PF00580 UvrD/REP helicase N-terminal domain V060002_03653 PF13361 UvrD-like helicase C-terminal domain V060002_03654 PF00440 Bacterial regulatory proteins, tetR family V060002_03655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V060002_03656 PF00873 AcrB/AcrD/AcrF family V060002_03657 PF04380 Membrane fusogenic activity V060002_03658 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain V060002_03658 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain V060002_03659 PF03466 LysR substrate binding domain V060002_03659 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03667 PF12724 Flavodoxin domain V060002_03668 PF02386 Cation transport protein V060002_03669 PF01205 Uncharacterized protein family UPF0029 V060002_03669 PF09186 Domain of unknown function (DUF1949) V060002_03670 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V060002_03670 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V060002_03670 PF00378 Enoyl-CoA hydratase/isomerase V060002_03671 PF02803 Thiolase, C-terminal domain V060002_03671 PF00108 Thiolase, N-terminal domain V060002_03672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03672 PF03466 LysR substrate binding domain V060002_03673 PF07690 Major Facilitator Superfamily V060002_03674 PF12804 MobA-like NTP transferase domain V060002_03674 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_03675 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain V060002_03675 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain V060002_03676 PF02874 ATP synthase alpha/beta family, beta-barrel domain V060002_03676 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V060002_03677 PF00231 ATP synthase V060002_03678 PF00306 ATP synthase alpha/beta chain, C terminal domain V060002_03678 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V060002_03678 PF02874 ATP synthase alpha/beta family, beta-barrel domain V060002_03679 PF00213 ATP synthase delta (OSCP) subunit V060002_03680 PF00430 ATP synthase B/B' CF(0) V060002_03681 PF00137 ATP synthase subunit C V060002_03682 PF00119 ATP synthase A chain V060002_03683 PF03899 ATP synthase I chain V060002_03684 PF02195 ParB-like nuclease domain V060002_03684 PF17762 HTH domain found in ParB protein V060002_03685 PF13614 AAA domain V060002_03686 PF02527 rRNA small subunit methyltransferase G V060002_03687 PF13932 GidA associated domain V060002_03687 PF01134 Glucose inhibited division protein A