V060002_00001 PF00258 Flavodoxin V060002_00002 PF14280 V060002_00002 V060002_00004 PF04986 V060002_00004 V060002_00004 PF14319 V060002_00004 V060002_00005 PF00809 Pterin binding enzyme V060002_00006 PF00893 Small Multidrug Resistance protein V060002_00007 PF01909 Nucleotidyltransferase domain V060002_00007 PF13427 V060002_00007 V060002_00008 PF00589 Phage integrase family V060002_00008 PF13495 Phage integrase, N-terminal SAM-like domain V060002_00009 PF06616 BsuBI/PstI restriction endonuclease C-terminus V060002_00013 PF12835 Integrase V060002_00019 PF06122 V060002_00019 V060002_00020 PF07916 V060002_00020 V060002_00024 PF05280 Flagellar transcriptional activator (FlhC) V060002_00025 PF06986 V060002_00025 V060002_00027 PF04796 V060002_00027 V060002_00028 PF12728 Helix-turn-helix domain V060002_00029 PF00589 Phage integrase family V060002_00029 PF13102 Phage integrase SAM-like domain V060002_00029 PF17293 V060002_00029 V060002_00030 PF01926 50S ribosome-binding GTPase V060002_00030 PF10396 GTP-binding protein TrmE N-terminus V060002_00030 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE V060002_00031 PF02096 60Kd inner membrane protein V060002_00031 PF14849 YidC periplasmic domain V060002_00032 PF00825 Ribonuclease P V060002_00033 PF00468 Ribosomal protein L34 V060002_00034 PF00005 ABC transporter V060002_00035 PF00528 Binding-protein-dependent transport system inner membrane component V060002_00036 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_00037 PF00308 Bacterial dnaA protein V060002_00037 PF08299 Bacterial dnaA protein helix-turn-helix V060002_00037 PF11638 DnaA N-terminal domain V060002_00038 PF00712 DNA polymerase III beta subunit, N-terminal domain V060002_00038 PF02767 DNA polymerase III beta subunit, central domain V060002_00038 PF02768 DNA polymerase III beta subunit, C-terminal domain V060002_00039 PF02463 RecF/RecN/SMC N terminal domain V060002_00040 PF00204 DNA gyrase B V060002_00040 PF00986 DNA gyrase B subunit, carboxyl terminus V060002_00040 PF01751 Toprim domain V060002_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00043 PF00011 Hsp20/alpha crystallin family V060002_00044 PF00155 Aminotransferase class I and II V060002_00045 PF02092 V060002_00045 V060002_00045 PF05746 DALR anticodon binding domain V060002_00046 PF02091 Glycyl-tRNA synthetase alpha subunit V060002_00047 PF01169 V060002_00047 V060002_00049 PF01206 Sulfurtransferase TusA V060002_00051 PF00107 Zinc-binding dehydrogenase V060002_00051 PF08240 Alcohol dehydrogenase GroES-like domain V060002_00052 PF00291 Pyridoxal-phosphate dependent enzyme V060002_00052 PF00585 C-terminal regulatory domain of Threonine dehydratase V060002_00053 PF00920 Dehydratase family V060002_00054 PF01063 Aminotransferase class IV V060002_00055 PF13710 ACT domain V060002_00056 PF00205 Thiamine pyrophosphate enzyme, central domain V060002_00056 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V060002_00056 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V060002_00057 PF01078 Magnesium chelatase, subunit ChlI V060002_00057 PF13335 V060002_00057 V060002_00057 PF13541 Subunit ChlI of Mg-chelatase V060002_00058 PF01553 Acyltransferase V060002_00059 PF01323 DSBA-like thioredoxin domain V060002_00060 PF01636 Phosphotransferase enzyme family V060002_00061 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase V060002_00061 PF12801 V060002_00061 V060002_00061 PF13746 4Fe-4S dicluster domain V060002_00062 PF06288 Protein of unknown function (DUF1040) V060002_00063 PF07070 V060002_00063 V060002_00064 PF03006 V060002_00064 V060002_00065 PF11355 V060002_00065 V060002_00066 PF02386 Cation transport protein V060002_00067 PF02080 TrkA-C domain V060002_00067 PF02254 TrkA-N domain V060002_00068 PF01029 NusB family V060002_00068 PF01189 NOL1/NOP2/sun family V060002_00069 PF00551 Formyl transferase V060002_00069 PF02911 Formyl transferase, C-terminal domain V060002_00070 PF01327 Polypeptide deformylase V060002_00071 PF01476 LysM domain V060002_00072 PF02481 DNA recombination-mediator protein A V060002_00073 PF04361 V060002_00073 V060002_00074 PF01396 V060002_00074 V060002_00075 PF02222 ATP-grasp domain V060002_00076 PF00731 AIR carboxylase V060002_00077 PF01300 Telomere recombination V060002_00078 PF01218 Coproporphyrinogen III oxidase V060002_00079 PF01488 Shikimate / quinate 5-dehydrogenase V060002_00079 PF08501 Shikimate dehydrogenase substrate binding domain V060002_00080 PF07369 Protein of unknown function (DUF1488) V060002_00081 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_00088 PF02537 V060002_00088 V060002_00089 PF01964 ThiC family V060002_00089 PF13667 ThiC-associated domain V060002_00090 PF02581 Thiamine monophosphate synthase/TENI V060002_00091 PF00899 ThiF family V060002_00092 PF02597 ThiS family V060002_00093 PF05690 Thiazole biosynthesis protein ThiG V060002_00094 PF04055 Radical SAM superfamily V060002_00094 PF06968 Biotin and Thiamin Synthesis associated domain V060002_00095 PF00557 Metallopeptidase family M24 V060002_00095 PF01321 Creatinase/Prolidase N-terminal domain V060002_00095 PF16188 V060002_00095 V060002_00095 PF16189 V060002_00095 V060002_00096 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00096 PF03466 LysR substrate binding domain V060002_00097 PF07690 Major Facilitator Superfamily V060002_00099 PF01037 AsnC family V060002_00099 PF13404 AsnC-type helix-turn-helix domain V060002_00100 PF00563 EAL domain V060002_00100 PF00990 GGDEF domain V060002_00100 PF13426 PAS domain V060002_00101 PF04445 Putative SAM-dependent methyltransferase V060002_00103 PF00892 EamA-like transporter family V060002_00104 PF00582 Universal stress protein family V060002_00105 PF00210 Ferritin-like domain V060002_00106 PF10625 V060002_00106 V060002_00107 PF03486 HI0933-like protein V060002_00108 PF00892 EamA-like transporter family V060002_00109 PF02646 V060002_00109 V060002_00110 PF01209 ubiE/COQ5 methyltransferase family V060002_00111 PF02036 SCP-2 sterol transfer family V060002_00112 PF03109 V060002_00112 V060002_00113 PF02416 mttA/Hcf106 family V060002_00114 PF02416 mttA/Hcf106 family V060002_00115 PF00902 Sec-independent protein translocase protein (TatC) V060002_00116 PF00034 Cytochrome c V060002_00116 PF03150 Di-haem cytochrome c peroxidase V060002_00117 PF01554 MatE V060002_00118 PF04072 Leucine carboxyl methyltransferase V060002_00119 PF00717 Peptidase S24-like V060002_00119 PF01726 LexA DNA binding domain V060002_00120 PF01553 Acyltransferase V060002_00121 PF01040 UbiA prenyltransferase family V060002_00122 PF04345 Chorismate lyase V060002_00123 PF03748 V060002_00123 V060002_00124 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_00124 PF08447 PAS fold V060002_00124 PF08448 PAS fold V060002_00125 PF01694 Rhomboid family V060002_00125 PF12122 Protein of unknown function (DUF3582) V060002_00126 PF00581 Rhodanese-like domain V060002_00127 PF01026 TatD related DNase V060002_00128 PF00490 Delta-aminolevulinic acid dehydratase V060002_00129 PF00583 Acetyltransferase (GNAT) family V060002_00130 PF00476 DNA polymerase family A V060002_00130 PF01367 5'-3' exonuclease, C-terminal SAM fold V060002_00130 PF01612 3'-5' exonuclease V060002_00130 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V060002_00131 PF01926 50S ribosome-binding GTPase V060002_00132 PF00034 Cytochrome c V060002_00133 PF13489 Methyltransferase domain V060002_00134 PF04220 V060002_00134 V060002_00135 PF10675 V060002_00135 V060002_00136 PF04055 Radical SAM superfamily V060002_00136 PF06969 HemN C-terminal domain V060002_00137 PF07219 V060002_00137 V060002_00138 PF04375 V060002_00138 V060002_00139 PF02602 Uroporphyrinogen-III synthase HemD V060002_00140 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain V060002_00140 PF03900 Porphobilinogen deaminase, C-terminal domain V060002_00141 PF01295 V060002_00141 V060002_00141 PF12633 V060002_00141 V060002_00142 PF01491 Frataxin-like domain V060002_00143 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain V060002_00143 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V060002_00144 PF01678 Diaminopimelate epimerase V060002_00145 PF04340 Protein of unknown function, DUF484 V060002_00146 PF00589 Phage integrase family V060002_00146 PF02899 Phage integrase, N-terminal SAM-like domain V060002_00147 PF13419 Haloacid dehalogenase-like hydrolase V060002_00148 PF00563 EAL domain V060002_00148 PF00990 GGDEF domain V060002_00148 PF08495 V060002_00148 V060002_00148 PF10442 V060002_00148 V060002_00149 PF03942 V060002_00149 V060002_00151 PF08282 haloacid dehalogenase-like hydrolase V060002_00152 PF12146 Putative lysophospholipase V060002_00153 PF01810 V060002_00153 V060002_00154 PF00563 EAL domain V060002_00154 PF08668 HDOD domain V060002_00155 PF00210 Ferritin-like domain V060002_00156 PF10694 Protein of unknown function (DUF2500) V060002_00157 PF13643 V060002_00157 V060002_00158 PF07947 V060002_00158 V060002_00159 PF06611 V060002_00159 V060002_00160 PF03602 Conserved hypothetical protein 95 V060002_00161 PF00448 SRP54-type protein, GTPase domain V060002_00161 PF02881 SRP54-type protein, helical bundle domain V060002_00162 PF00005 ABC transporter V060002_00164 PF00140 Sigma-70 factor, region 1 V060002_00164 PF04542 Sigma-70 region 2 V060002_00164 PF04545 Sigma-70, region 4 V060002_00165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V060002_00165 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_00166 PF00440 Bacterial regulatory proteins, tetR family V060002_00167 PF07226 V060002_00167 V060002_00168 PF05958 tRNA (Uracil-5-)-methyltransferase V060002_00169 PF00593 TonB dependent receptor V060002_00169 PF07715 TonB-dependent Receptor Plug Domain V060002_00170 PF00082 Subtilase family V060002_00170 PF04151 Bacterial pre-peptidase C-terminal domain V060002_00170 PF05922 Peptidase inhibitor I9 V060002_00171 PF01177 Asp/Glu/Hydantoin racemase V060002_00172 PF00076 RNA recognition motif V060002_00185 PF00962 Adenosine/AMP deaminase V060002_00186 PF00563 EAL domain V060002_00186 PF00990 GGDEF domain V060002_00186 PF02743 Cache domain V060002_00187 PF00072 Response regulator receiver domain V060002_00187 PF00158 Sigma-54 interaction domain V060002_00187 PF02954 Bacterial regulatory protein, Fis family V060002_00188 PF00512 His Kinase A (phospho-acceptor) domain V060002_00188 PF00989 PAS fold V060002_00188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00189 PF13511 V060002_00189 V060002_00190 PF00120 Glutamine synthetase, catalytic domain V060002_00190 PF03951 Glutamine synthetase, beta-Grasp domain V060002_00192 PF00009 Elongation factor Tu GTP binding domain V060002_00192 PF00679 Elongation factor G C-terminus V060002_00192 PF03144 Elongation factor Tu domain 2 V060002_00193 PF13521 AAA domain V060002_00194 PF03631 V060002_00194 V060002_00195 PF02580 D-Tyr-tRNA(Tyr) deacylase V060002_00196 PF09500 Putative thioesterase (yiiD_Cterm) V060002_00196 PF13673 Acetyltransferase (GNAT) domain V060002_00197 PF05170 V060002_00197 V060002_00198 PF01293 Phosphoenolpyruvate carboxykinase V060002_00199 PF01430 Hsp33 protein V060002_00200 PF01479 S4 domain V060002_00201 PF11356 Type IV pilus biogenesis V060002_00202 PF00263 V060002_00202 V060002_00202 PF03958 Bacterial type II/III secretion system short domain V060002_00203 PF00437 Type II/IV secretion system protein V060002_00204 PF00482 Type II secretion system (T2SS), protein F V060002_00205 PF07963 Prokaryotic N-terminal methylation motif V060002_00205 PF08334 Type II secretion system (T2SS), protein G V060002_00206 PF12019 Type II transport protein GspH V060002_00207 PF02501 Type II secretion system (T2SS), protein I V060002_00207 PF07963 Prokaryotic N-terminal methylation motif V060002_00208 PF07963 Prokaryotic N-terminal methylation motif V060002_00208 PF11612 Type II secretion system (T2SS), protein J V060002_00209 PF03934 Type II secretion system (T2SS), protein K V060002_00210 PF05134 Type II secretion system (T2SS), protein L V060002_00210 PF12693 GspL periplasmic domain V060002_00211 PF04612 Type II secretion system (T2SS), protein M V060002_00212 PF01203 V060002_00212 V060002_00213 PF00459 Inositol monophosphatase family V060002_00214 PF00293 NUDIX domain V060002_00215 PF01106 NifU-like domain V060002_00215 PF01521 Iron-sulphur cluster biosynthesis V060002_00216 PF00156 Phosphoribosyl transferase domain V060002_00217 PF00561 alpha/beta hydrolase fold V060002_00219 PF00575 S1 RNA binding domain V060002_00219 PF09371 Tex-like protein N-terminal domain V060002_00219 PF12836 Helix-hairpin-helix motif V060002_00219 PF16921 V060002_00219 V060002_00220 PF01272 Transcription elongation factor, GreA/GreB, C-term V060002_00220 PF03449 Transcription elongation factor, N-terminal V060002_00221 PF00072 Response regulator receiver domain V060002_00221 PF00486 Transcriptional regulatory protein, C terminal V060002_00222 PF00512 His Kinase A (phospho-acceptor) domain V060002_00222 PF00672 HAMP domain V060002_00222 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00223 PF00860 Permease family V060002_00224 PF00270 DEAD/DEAH box helicase V060002_00224 PF00271 Helicase conserved C-terminal domain V060002_00224 PF17191 V060002_00224 V060002_00225 PF02824 TGS domain V060002_00225 PF04607 Region found in RelA / SpoT proteins V060002_00225 PF13291 ACT domain V060002_00225 PF13328 HD domain V060002_00226 PF01192 RNA polymerase Rpb6 V060002_00227 PF00625 Guanylate kinase V060002_00228 PF02592 V060002_00228 V060002_00229 PF00474 Sodium:solute symporter family V060002_00230 PF13937 V060002_00230 V060002_00231 PF00999 Sodium/hydrogen exchanger family V060002_00231 PF02080 TrkA-C domain V060002_00231 PF03471 Transporter associated domain V060002_00232 PF00072 Response regulator receiver domain V060002_00232 PF00196 Bacterial regulatory proteins, luxR family V060002_00233 PF02683 V060002_00233 V060002_00233 PF11412 Disulphide bond corrector protein DsbC V060002_00233 PF13899 Thioredoxin-like V060002_00234 PF11852 Domain of unknown function (DUF3372) V060002_00235 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V060002_00235 PF03714 Bacterial pullanase-associated domain V060002_00236 PF03605 V060002_00236 V060002_00237 PF03605 V060002_00237 V060002_00238 PF00206 Lyase V060002_00238 PF10415 Fumarase C C-terminus V060002_00239 PF00990 GGDEF domain V060002_00240 PF04186 V060002_00240 V060002_00241 PF00588 SpoU rRNA Methylase family V060002_00242 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V060002_00242 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V060002_00243 PF00512 His Kinase A (phospho-acceptor) domain V060002_00243 PF00672 HAMP domain V060002_00243 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00243 PF16527 V060002_00243 V060002_00244 PF00072 Response regulator receiver domain V060002_00244 PF00486 Transcriptional regulatory protein, C terminal V060002_00245 PF07813 LTXXQ motif family protein V060002_00246 PF01545 Cation efflux family V060002_00246 PF16916 V060002_00246 V060002_00247 PF00365 Phosphofructokinase V060002_00248 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded V060002_00249 PF02219 Methylenetetrahydrofolate reductase V060002_00250 PF00696 Amino acid kinase family V060002_00250 PF00742 Homoserine dehydrogenase V060002_00250 PF03447 Homoserine dehydrogenase, NAD binding domain V060002_00251 PF01053 Cys/Met metabolism PLP-dependent enzyme V060002_00252 PF01340 Met Apo-repressor, MetJ V060002_00253 PF00390 Malic enzyme, N-terminal domain V060002_00253 PF03949 Malic enzyme, NAD binding domain V060002_00254 PF01197 Ribosomal protein L31 V060002_00255 PF00270 DEAD/DEAH box helicase V060002_00255 PF00271 Helicase conserved C-terminal domain V060002_00256 PF00356 Bacterial regulatory proteins, lacI family V060002_00256 PF13377 Periplasmic binding protein-like domain V060002_00257 PF05036 Sporulation related domain V060002_00258 PF00227 Proteasome subunit V060002_00259 PF00004 ATPase family associated with various cellular activities (AAA) V060002_00259 PF07724 AAA domain (Cdc48 subfamily) V060002_00259 PF10431 C-terminal, D2-small domain, of ClpB protein V060002_00260 PF01040 UbiA prenyltransferase family V060002_00261 PF03737 Demethylmenaquinone methyltransferase V060002_00262 PF01554 MatE V060002_00263 PF00121 Triosephosphate isomerase V060002_00264 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase V060002_00265 PF05656 V060002_00265 V060002_00266 PF11333 V060002_00266 V060002_00267 PF13412 Winged helix-turn-helix DNA-binding V060002_00268 PF00166 Chaperonin 10 Kd subunit V060002_00269 PF00118 TCP-1/cpn60 chaperonin family V060002_00271 PF04055 Radical SAM superfamily V060002_00271 PF13353 4Fe-4S single cluster domain V060002_00272 PF01132 Elongation factor P (EF-P) OB domain V060002_00272 PF08207 Elongation factor P (EF-P) KOW-like domain V060002_00272 PF09285 Elongation factor P, C-terminal V060002_00273 PF02313 Fumarate reductase subunit D V060002_00274 PF02300 Fumarate reductase subunit C V060002_00275 PF13085 2Fe-2S iron-sulfur cluster binding domain V060002_00275 PF13183 4Fe-4S dicluster domain V060002_00276 PF00890 FAD binding domain V060002_00276 PF02910 Fumarate reductase flavoprotein C-term V060002_00277 PF00152 tRNA synthetases class II (D, K and N) V060002_00278 PF00581 Rhodanese-like domain V060002_00279 PF02556 Preprotein translocase subunit SecB V060002_00280 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus V060002_00280 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus V060002_00281 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_00281 PF06426 Serine acetyltransferase, N-terminal V060002_00282 PF03551 Transcriptional regulator PadR-like family V060002_00282 PF10400 Virulence activator alpha C-term V060002_00283 PF00311 Phosphoenolpyruvate carboxylase V060002_00284 PF01546 Peptidase family M20/M25/M40 V060002_00284 PF07687 Peptidase dimerisation domain V060002_00285 PF01118 Semialdehyde dehydrogenase, NAD binding domain V060002_00285 PF02774 Semialdehyde dehydrogenase, dimerisation domain V060002_00286 PF00696 Amino acid kinase family V060002_00287 PF00764 Arginosuccinate synthase V060002_00288 PF00206 Lyase V060002_00288 PF14698 Argininosuccinate lyase C-terminal V060002_00289 PF12292 V060002_00289 V060002_00290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V060002_00290 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_00291 PF00462 Glutaredoxin V060002_00291 PF08534 Redoxin V060002_00292 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00292 PF03466 LysR substrate binding domain V060002_00293 PF00905 Penicillin binding protein transpeptidase domain V060002_00293 PF00912 Transglycosylase V060002_00293 PF17092 V060002_00293 V060002_00294 PF11104 Type IV pilus assembly protein PilM; V060002_00295 PF05137 V060002_00295 V060002_00296 PF04350 Pilus assembly protein, PilO V060002_00297 PF04351 Pilus assembly protein, PilP V060002_00298 PF00263 V060002_00298 V060002_00298 PF03958 Bacterial type II/III secretion system short domain V060002_00299 PF01202 Shikimate kinase V060002_00300 PF01761 3-dehydroquinate synthase V060002_00301 PF05036 Sporulation related domain V060002_00301 PF13401 AAA domain V060002_00302 PF02086 D12 class N6 adenine-specific DNA methyltransferase V060002_00303 PF00834 Ribulose-phosphate 3 epimerase family V060002_00304 PF13419 Haloacid dehalogenase-like hydrolase V060002_00305 PF00579 tRNA synthetases class I (W and Y) V060002_00306 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_00307 PF00932 Lamin Tail Domain V060002_00308 PF00919 Uncharacterized protein family UPF0004 V060002_00308 PF04055 Radical SAM superfamily V060002_00309 PF00117 Glutamine amidotransferase class-I V060002_00310 PF00202 Aminotransferase class-III V060002_00311 PF04958 Arginine N-succinyltransferase beta subunit V060002_00312 PF00171 Aldehyde dehydrogenase family V060002_00313 PF07063 Domain of unknown function (DUF1338) V060002_00314 PF00027 Cyclic nucleotide-binding domain V060002_00314 PF00325 Bacterial regulatory proteins, crp family V060002_00315 PF00485 Phosphoribulokinase / Uridine kinase family V060002_00316 PF06794 Uncharacterised protein family (UPF0270) V060002_00317 PF00561 alpha/beta hydrolase fold V060002_00318 PF09523 V060002_00318 V060002_00319 PF00005 ABC transporter V060002_00319 PF09496 Cenp-O kinetochore centromere component V060002_00319 PF12848 ABC transporter V060002_00320 PF02525 Flavodoxin-like fold V060002_00321 PF00999 Sodium/hydrogen exchanger family V060002_00321 PF02254 TrkA-N domain V060002_00323 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V060002_00324 PF01112 Asparaginase V060002_00325 PF00709 Adenylosuccinate synthetase V060002_00326 PF08238 Sel1 repeat V060002_00327 PF00884 Sulfatase V060002_00327 PF11893 V060002_00327 V060002_00328 PF00575 S1 RNA binding domain V060002_00328 PF00773 RNB domain V060002_00328 PF08206 Ribonuclease B OB domain V060002_00328 PF08461 Ribonuclease R winged-helix domain V060002_00329 PF00588 SpoU rRNA Methylase family V060002_00329 PF08032 RNA 2'-O ribose methyltransferase substrate binding V060002_00330 PF00338 Ribosomal protein S10p/S20e V060002_00331 PF00297 Ribosomal protein L3 V060002_00332 PF00573 Ribosomal protein L4/L1 family V060002_00333 PF00276 Ribosomal protein L23 V060002_00334 PF00181 Ribosomal Proteins L2, RNA binding domain V060002_00334 PF03947 Ribosomal Proteins L2, C-terminal domain V060002_00335 PF00203 Ribosomal protein S19 V060002_00336 PF00237 Ribosomal protein L22p/L17e V060002_00337 PF00189 Ribosomal protein S3, C-terminal domain V060002_00337 PF07650 KH domain V060002_00338 PF00252 Ribosomal protein L16p/L10e V060002_00339 PF00831 Ribosomal L29 protein V060002_00340 PF00366 Ribosomal protein S17 V060002_00341 PF00238 Ribosomal protein L14p/L23e V060002_00342 PF00467 KOW motif V060002_00342 PF17136 V060002_00342 V060002_00343 PF00281 Ribosomal protein L5 V060002_00343 PF00673 ribosomal L5P family C-terminus V060002_00344 PF00253 Ribosomal protein S14p/S29e V060002_00345 PF00410 Ribosomal protein S8 V060002_00346 PF00347 Ribosomal protein L6 V060002_00347 PF00861 Ribosomal L18p/L5e family V060002_00348 PF00333 Ribosomal protein S5, N-terminal domain V060002_00348 PF03719 Ribosomal protein S5, C-terminal domain V060002_00349 PF00327 Ribosomal protein L30p/L7e V060002_00350 PF00828 Ribosomal protein L18e/L15 V060002_00351 PF00344 SecY translocase V060002_00352 PF00444 Ribosomal protein L36 V060002_00353 PF00416 Ribosomal protein S13/S18 V060002_00354 PF00411 Ribosomal protein S11 V060002_00355 PF00163 Ribosomal protein S4/S9 N-terminal domain V060002_00355 PF01479 S4 domain V060002_00356 PF01000 RNA polymerase Rpb3/RpoA insert domain V060002_00356 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain V060002_00356 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain V060002_00357 PF01196 Ribosomal protein L17 V060002_00358 PF11075 V060002_00358 V060002_00359 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V060002_00359 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V060002_00360 PF04225 Opacity-associated protein A LysM-like domain V060002_00360 PF08525 V060002_00360 V060002_00361 PF00892 EamA-like transporter family V060002_00362 PF13673 Acetyltransferase (GNAT) domain V060002_00363 PF00270 DEAD/DEAH box helicase V060002_00363 PF00271 Helicase conserved C-terminal domain V060002_00363 PF03880 DbpA RNA binding domain V060002_00365 PF00149 Calcineurin-like phosphoesterase V060002_00365 PF02872 5'-nucleotidase, C-terminal domain V060002_00366 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V060002_00367 PF01507 Phosphoadenosine phosphosulfate reductase family V060002_00368 PF00009 Elongation factor Tu GTP binding domain V060002_00369 PF01583 Adenylylsulphate kinase V060002_00370 PF10987 V060002_00370 V060002_00371 PF11736 Protein of unknown function (DUF3299) V060002_00372 PF02687 V060002_00372 V060002_00372 PF12704 MacB-like periplasmic core domain V060002_00373 PF00005 ABC transporter V060002_00374 PF10986 V060002_00374 V060002_00375 PF10795 V060002_00375 V060002_00376 PF09695 V060002_00376 V060002_00377 PF01625 Peptide methionine sulfoxide reductase V060002_00378 PF01103 Surface antigen V060002_00378 PF17243 V060002_00378 V060002_00379 PF04357 V060002_00379 V060002_00380 PF06094 AIG2-like family V060002_00381 PF00719 Inorganic pyrophosphatase V060002_00382 PF00316 Fructose-1-6-bisphosphatase V060002_00383 PF01225 Mur ligase family, catalytic domain V060002_00383 PF02875 Mur ligase family, glutamate ligase domain V060002_00383 PF08245 Mur ligase middle domain V060002_00384 PF02441 Flavoprotein V060002_00385 PF13343 Bacterial extracellular solute-binding protein V060002_00386 PF00528 Binding-protein-dependent transport system inner membrane component V060002_00387 PF00005 ABC transporter V060002_00388 PF04751 Protein of unknown function (DUF615) V060002_00389 PF01523 Putative modulator of DNA gyrase V060002_00390 PF00571 CBS domain V060002_00390 PF01769 Divalent cation transporter V060002_00390 PF03448 MgtE intracellular N domain V060002_00391 PF00381 PTS HPr component phosphorylation site V060002_00392 PF03668 V060002_00392 V060002_00393 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V060002_00394 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V060002_00395 PF00309 V060002_00395 V060002_00395 PF04552 Sigma-54, DNA binding domain V060002_00395 PF04963 Sigma-54 factor, core binding domain V060002_00396 PF00005 ABC transporter V060002_00396 PF12399 Branched-chain amino acid ATP-binding cassette transporter V060002_00397 PF03968 OstA-like protein V060002_00398 PF06835 Lipopolysaccharide-assembly, LptC-related V060002_00399 PF08282 haloacid dehalogenase-like hydrolase V060002_00400 PF00571 CBS domain V060002_00400 PF01380 SIS domain V060002_00401 PF01699 Sodium/calcium exchanger protein V060002_00402 PF00005 ABC transporter V060002_00403 PF02405 V060002_00403 V060002_00404 PF02470 V060002_00404 V060002_00405 PF05494 Toluene tolerance, Ttg2 V060002_00406 PF13466 STAS domain V060002_00407 PF01722 BolA-like protein V060002_00408 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V060002_00409 PF01553 Acyltransferase V060002_00410 PF01042 Endoribonuclease L-PSP V060002_00411 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain V060002_00411 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain V060002_00412 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V060002_00412 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V060002_00413 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V060002_00413 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V060002_00414 PF02562 PhoH-like protein V060002_00414 PF13638 PIN domain V060002_00415 PF00176 SNF2 family N-terminal domain V060002_00415 PF00271 Helicase conserved C-terminal domain V060002_00415 PF12137 RNA polymerase recycling family C-terminal V060002_00416 PF00849 RNA pseudouridylate synthase V060002_00417 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V060002_00417 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V060002_00418 PF00133 tRNA synthetases class I (I, L, M and V) V060002_00418 PF08264 Anticodon-binding domain of tRNA V060002_00418 PF10458 Valyl tRNA synthetase tRNA binding arm V060002_00419 PF04364 DNA polymerase III chi subunit, HolC V060002_00420 PF00883 Cytosol aminopeptidase family, catalytic domain V060002_00420 PF02789 Cytosol aminopeptidase family, N-terminal domain V060002_00421 PF03739 V060002_00421 V060002_00422 PF03739 V060002_00422 V060002_00423 PF06271 V060002_00423 V060002_00425 PF01966 HD domain V060002_00425 PF11871 V060002_00425 V060002_00433 PF04784 V060002_00433 V060002_00434 PF00694 Aconitase C-terminal domain V060002_00435 PF00330 Aconitase family (aconitate hydratase) V060002_00436 PF00180 Isocitrate/isopropylmalate dehydrogenase V060002_00437 PF00682 HMGL-like V060002_00437 PF08502 LeuA allosteric (dimerisation) domain V060002_00438 PF00440 Bacterial regulatory proteins, tetR family V060002_00438 PF14514 Transcriptional regulator, TetR, C-terminal V060002_00439 PF01569 PAP2 superfamily V060002_00440 PF13528 Glycosyl transferase family 1 V060002_00441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00441 PF03466 LysR substrate binding domain V060002_00442 PF00501 AMP-binding enzyme V060002_00443 PF00205 Thiamine pyrophosphate enzyme, central domain V060002_00443 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V060002_00443 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V060002_00444 PF10369 Small subunit of acetolactate synthase V060002_00444 PF13710 ACT domain V060002_00445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V060002_00445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V060002_00446 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) V060002_00447 PF01812 5-formyltetrahydrofolate cyclo-ligase family V060002_00448 PF05164 Cell division protein ZapA V060002_00449 PF03695 Uncharacterised protein family (UPF0149) V060002_00450 PF01494 FAD binding domain V060002_00451 PF01494 FAD binding domain V060002_00452 PF06526 Protein of unknown function (DUF1107) V060002_00453 PF01571 Aminomethyltransferase folate-binding domain V060002_00454 PF03937 Flavinator of succinate dehydrogenase V060002_00456 PF00890 FAD binding domain V060002_00456 PF02910 Fumarate reductase flavoprotein C-term V060002_00457 PF04542 Sigma-70 region 2 V060002_00457 PF08281 Sigma-70, region 4 V060002_00458 PF03872 Anti sigma-E protein RseA, N-terminal domain V060002_00458 PF03873 Anti sigma-E protein RseA, C-terminal domain V060002_00459 PF03888 MucB/RseB family V060002_00459 PF17188 V060002_00459 V060002_00460 PF04246 V060002_00460 V060002_00461 PF00009 Elongation factor Tu GTP binding domain V060002_00461 PF00679 Elongation factor G C-terminus V060002_00461 PF03144 Elongation factor Tu domain 2 V060002_00461 PF06421 GTP-binding protein LepA C-terminus V060002_00462 PF00717 Peptidase S24-like V060002_00462 PF10502 Signal peptidase, peptidase S26 V060002_00463 PF00035 Double-stranded RNA binding motif V060002_00463 PF14622 Ribonuclease-III-like V060002_00464 PF01926 50S ribosome-binding GTPase V060002_00464 PF07650 KH domain V060002_00465 PF02565 Recombination protein O C terminal V060002_00465 PF11967 Recombination protein O N terminal V060002_00466 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ V060002_00467 PF01648 4'-phosphopantetheinyl transferase superfamily V060002_00470 PF00990 GGDEF domain V060002_00471 PF00072 Response regulator receiver domain V060002_00471 PF00512 His Kinase A (phospho-acceptor) domain V060002_00471 PF01627 Hpt domain V060002_00471 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00471 PF09984 V060002_00471 V060002_00472 PF01938 TRAM domain V060002_00472 PF05958 tRNA (Uracil-5-)-methyltransferase V060002_00473 PF02824 TGS domain V060002_00473 PF04607 Region found in RelA / SpoT proteins V060002_00473 PF13291 ACT domain V060002_00473 PF13328 HD domain V060002_00474 PF03819 MazG nucleotide pyrophosphohydrolase domain V060002_00475 PF00117 Glutamine amidotransferase class-I V060002_00475 PF06418 CTP synthase N-terminus V060002_00476 PF00113 Enolase, C-terminal TIM barrel domain V060002_00476 PF03952 Enolase, N-terminal domain V060002_00477 PF01743 Poly A polymerase head domain V060002_00477 PF01966 HD domain V060002_00477 PF12627 Probable RNA and SrmB- binding site of polymerase A V060002_00478 PF01471 Putative peptidoglycan binding domain V060002_00478 PF13401 AAA domain V060002_00479 PF16537 V060002_00479 V060002_00480 PF08239 Bacterial SH3 domain V060002_00481 PF01384 V060002_00481 V060002_00482 PF01865 Protein of unknown function DUF47 V060002_00483 PF01928 CYTH domain V060002_00483 PF05235 CHAD domain V060002_00485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_00486 PF03710 Glutamate-ammonia ligase adenylyltransferase V060002_00487 PF08335 GlnD PII-uridylyltransferase V060002_00488 PF03710 Glutamate-ammonia ligase adenylyltransferase V060002_00489 PF03710 Glutamate-ammonia ligase adenylyltransferase V060002_00491 PF03819 MazG nucleotide pyrophosphohydrolase domain V060002_00493 PF06418 CTP synthase N-terminus V060002_00494 PF00117 Glutamine amidotransferase class-I V060002_00494 PF06418 CTP synthase N-terminus V060002_00495 PF00113 Enolase, C-terminal TIM barrel domain V060002_00495 PF03952 Enolase, N-terminal domain V060002_00496 PF01743 Poly A polymerase head domain V060002_00496 PF01966 HD domain V060002_00496 PF12627 Probable RNA and SrmB- binding site of polymerase A V060002_00497 PF01471 Putative peptidoglycan binding domain V060002_00497 PF13401 AAA domain V060002_00498 PF16537 V060002_00498 V060002_00499 PF08239 Bacterial SH3 domain V060002_00500 PF01384 V060002_00500 V060002_00501 PF01865 Protein of unknown function DUF47 V060002_00502 PF01928 CYTH domain V060002_00502 PF05235 CHAD domain V060002_00504 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_00505 PF03710 Glutamate-ammonia ligase adenylyltransferase V060002_00505 PF08335 GlnD PII-uridylyltransferase V060002_00506 PF00294 pfkB family carbohydrate kinase V060002_00506 PF01467 Cytidylyltransferase V060002_00507 PF02321 Outer membrane efflux protein V060002_00508 PF00293 NUDIX domain V060002_00509 PF06853 V060002_00509 V060002_00510 PF00149 Calcineurin-like phosphoesterase V060002_00511 PF05728 Uncharacterised protein family (UPF0227) V060002_00512 PF00204 DNA gyrase B V060002_00512 PF00986 DNA gyrase B subunit, carboxyl terminus V060002_00512 PF01751 Toprim domain V060002_00512 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00513 PF00521 DNA gyrase/topoisomerase IV, subunit A V060002_00513 PF03989 DNA gyrase C-terminal domain, beta-propeller V060002_00514 PF03884 Domain of unknown function (DUF329) V060002_00515 PF07072 Protein of unknown function (DUF1342) V060002_00516 PF01121 Dephospho-CoA kinase V060002_00517 PF01478 Type IV leader peptidase family V060002_00517 PF06750 V060002_00517 V060002_00518 PF00482 Type II secretion system (T2SS), protein F V060002_00519 PF00437 Type II/IV secretion system protein V060002_00519 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain V060002_00520 PF00114 Pilin (bacterial filament) V060002_00520 PF07963 Prokaryotic N-terminal methylation motif V060002_00521 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain V060002_00521 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain V060002_00522 PF01510 N-acetylmuramoyl-L-alanine amidase V060002_00523 PF00258 Flavodoxin V060002_00524 PF00589 Phage integrase family V060002_00524 PF02899 Phage integrase, N-terminal SAM-like domain V060002_00525 PF10411 Disulfide bond isomerase protein N-terminus V060002_00525 PF13098 Thioredoxin-like domain V060002_00526 PF01368 DHH family V060002_00526 PF02272 DHHA1 domain V060002_00527 PF00149 Calcineurin-like phosphoesterase V060002_00527 PF02872 5'-nucleotidase, C-terminal domain V060002_00528 PF00392 Bacterial regulatory proteins, gntR family V060002_00528 PF07729 FCD domain V060002_00529 PF00456 Transketolase, thiamine diphosphate binding domain V060002_00530 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V060002_00530 PF00364 Biotin-requiring enzyme V060002_00530 PF02817 e3 binding domain V060002_00531 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V060002_00531 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_00532 PF01795 MraW methylase family V060002_00533 PF04999 V060002_00533 V060002_00534 PF00905 Penicillin binding protein transpeptidase domain V060002_00534 PF03717 Penicillin-binding Protein dimerisation domain V060002_00535 PF01225 Mur ligase family, catalytic domain V060002_00535 PF02875 Mur ligase family, glutamate ligase domain V060002_00535 PF08245 Mur ligase middle domain V060002_00536 PF01225 Mur ligase family, catalytic domain V060002_00536 PF02875 Mur ligase family, glutamate ligase domain V060002_00536 PF08245 Mur ligase middle domain V060002_00537 PF00953 Glycosyl transferase family 4 V060002_00537 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 V060002_00538 PF02875 Mur ligase family, glutamate ligase domain V060002_00538 PF08245 Mur ligase middle domain V060002_00539 PF01098 V060002_00539 V060002_00540 PF03033 Glycosyltransferase family 28 N-terminal domain V060002_00540 PF04101 Glycosyltransferase family 28 C-terminal domain V060002_00541 PF01225 Mur ligase family, catalytic domain V060002_00541 PF02875 Mur ligase family, glutamate ligase domain V060002_00541 PF08245 Mur ligase middle domain V060002_00542 PF03799 Cell division protein FtsQ V060002_00542 PF08478 POTRA domain, FtsQ-type V060002_00543 PF02491 SHS2 domain inserted in FTSA V060002_00543 PF14450 Cell division protein FtsA V060002_00544 PF00091 Tubulin/FtsZ family, GTPase domain V060002_00544 PF12327 FtsZ family, C-terminal domain V060002_00545 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase V060002_00546 PF05258 V060002_00546 V060002_00547 PF01043 SecA preprotein cross-linking domain V060002_00547 PF02810 SEC-C motif V060002_00547 PF07516 SecA Wing and Scaffold domain V060002_00547 PF07517 SecA DEAD-like domain V060002_00548 PF00293 NUDIX domain V060002_00549 PF01113 Dihydrodipicolinate reductase, N-terminus V060002_00549 PF05173 Dihydrodipicolinate reductase, C-terminus V060002_00550 PF00117 Glutamine amidotransferase class-I V060002_00550 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain V060002_00551 PF02142 MGS-like domain V060002_00551 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V060002_00551 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain V060002_00555 PF13304 AAA domain V060002_00556 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) V060002_00557 PF01925 V060002_00557 V060002_00558 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00558 PF03466 LysR substrate binding domain V060002_00559 PF03458 V060002_00559 V060002_00560 PF01497 Periplasmic binding protein V060002_00561 PF03186 V060002_00561 V060002_00562 PF01048 Phosphorylase superfamily V060002_00563 PF07386 V060002_00563 V060002_00564 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_00564 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V060002_00565 PF00310 Glutamine amidotransferases class-II V060002_00565 PF01493 GXGXG motif V060002_00565 PF01645 Conserved region in glutamate synthase V060002_00565 PF04898 Glutamate synthase central domain V060002_00566 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_00566 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V060002_00567 PF00310 Glutamine amidotransferases class-II V060002_00567 PF01493 GXGXG motif V060002_00567 PF01645 Conserved region in glutamate synthase V060002_00567 PF04898 Glutamate synthase central domain V060002_00568 PF04055 Radical SAM superfamily V060002_00568 PF16199 V060002_00568 V060002_00569 PF00990 GGDEF domain V060002_00569 PF08448 PAS fold V060002_00569 PF13188 PAS domain V060002_00570 PF00072 Response regulator receiver domain V060002_00570 PF00512 His Kinase A (phospho-acceptor) domain V060002_00570 PF00989 PAS fold V060002_00570 PF01627 Hpt domain V060002_00570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00571 PF00072 Response regulator receiver domain V060002_00571 PF00486 Transcriptional regulatory protein, C terminal V060002_00572 PF11697 V060002_00572 V060002_00573 PF03737 Demethylmenaquinone methyltransferase V060002_00575 PF00696 Amino acid kinase family V060002_00575 PF00742 Homoserine dehydrogenase V060002_00575 PF01842 ACT domain V060002_00575 PF03447 Homoserine dehydrogenase, NAD binding domain V060002_00575 PF13840 ACT domain V060002_00576 PF00288 GHMP kinases N terminal domain V060002_00576 PF08544 GHMP kinases C terminal V060002_00577 PF00291 Pyridoxal-phosphate dependent enzyme V060002_00577 PF14821 Threonine synthase N terminus V060002_00578 PF01228 Glycine radical V060002_00579 PF01261 Xylose isomerase-like TIM barrel V060002_00580 PF03167 Uracil DNA glycosylase superfamily V060002_00581 PF01814 Hemerythrin HHE cation binding domain V060002_00582 PF12065 V060002_00582 V060002_00583 PF01235 V060002_00583 V060002_00584 PF03883 V060002_00584 V060002_00585 PF17320 V060002_00585 V060002_00586 PF01026 TatD related DNase V060002_00587 PF01773 Na+ dependent nucleoside transporter N-terminus V060002_00587 PF07662 Na+ dependent nucleoside transporter C-terminus V060002_00587 PF07670 Nucleoside recognition V060002_00588 PF01791 DeoC/LacD family aldolase V060002_00589 PF00591 Glycosyl transferase family, a/b domain V060002_00589 PF02885 Glycosyl transferase family, helical bundle domain V060002_00589 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain V060002_00590 PF01676 Metalloenzyme superfamily V060002_00591 PF01048 Phosphorylase superfamily V060002_00592 PF10144 V060002_00592 V060002_00593 PF00702 haloacid dehalogenase-like hydrolase V060002_00594 PF07238 PilZ domain V060002_00595 PF13481 AAA domain V060002_00595 PF13541 Subunit ChlI of Mg-chelatase V060002_00596 PF00009 Elongation factor Tu GTP binding domain V060002_00596 PF00679 Elongation factor G C-terminus V060002_00596 PF03144 Elongation factor Tu domain 2 V060002_00596 PF03764 Elongation factor G, domain IV V060002_00596 PF14492 Elongation Factor G, domain II V060002_00597 PF00501 AMP-binding enzyme V060002_00598 PF13487 HD domain V060002_00599 PF02417 V060002_00599 V060002_00600 PF00703 Glycosyl hydrolases family 2 V060002_00600 PF02836 Glycosyl hydrolases family 2, TIM barrel domain V060002_00600 PF02837 Glycosyl hydrolases family 2, sugar binding domain V060002_00600 PF02929 Beta galactosidase small chain V060002_00600 PF16353 V060002_00600 V060002_00601 PF00356 Bacterial regulatory proteins, lacI family V060002_00601 PF13377 Periplasmic binding protein-like domain V060002_00602 PF01588 Putative tRNA binding domain V060002_00603 PF06094 AIG2-like family V060002_00604 PF01544 CorA-like Mg2+ transporter protein V060002_00605 PF08443 RimK-like ATP-grasp domain V060002_00605 PF14401 V060002_00605 V060002_00607 PF00583 Acetyltransferase (GNAT) family V060002_00607 PF11814 V060002_00607 V060002_00608 PF05940 V060002_00608 V060002_00609 PF14602 Hexapeptide repeat of succinyl-transferase V060002_00609 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle V060002_00609 PF14790 Tetrahydrodipicolinate N-succinyltransferase N-terminal V060002_00610 PF07130 YebG protein V060002_00611 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00611 PF03466 LysR substrate binding domain V060002_00612 PF03595 Voltage-dependent anion channel V060002_00613 PF04257 Exodeoxyribonuclease V, gamma subunit V060002_00614 PF00580 UvrD/REP helicase N-terminal domain V060002_00614 PF12705 PD-(D/E)XK nuclease superfamily V060002_00614 PF13361 UvrD-like helicase C-terminal domain V060002_00615 PF13538 UvrD-like helicase C-terminal domain V060002_00615 PF13604 AAA domain V060002_00617 PF00583 Acetyltransferase (GNAT) family V060002_00617 PF00696 Amino acid kinase family V060002_00618 PF11012 V060002_00618 V060002_00619 PF03562 MltA specific insert domain V060002_00619 PF06725 3D domain V060002_00620 PF00899 ThiF family V060002_00621 PF02657 Fe-S metabolism associated domain V060002_00622 PF00266 Aminotransferase class-V V060002_00623 PF01965 DJ-1/PfpI family V060002_00624 PF02558 Ketopantoate reductase PanE/ApbA V060002_00624 PF08546 Ketopantoate reductase PanE/ApbA C terminal V060002_00625 PF03502 Nucleoside-specific channel-forming protein, Tsx V060002_00626 PF02190 ATP-dependent protease La (LON) domain V060002_00627 PF04542 Sigma-70 region 2 V060002_00627 PF04545 Sigma-70, region 4 V060002_00628 PF12973 ChrR Cupin-like domain V060002_00628 PF13490 Putative zinc-finger V060002_00629 PF07690 Major Facilitator Superfamily V060002_00630 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V060002_00631 PF03923 V060002_00631 V060002_00632 PF05175 Methyltransferase small domain V060002_00633 PF01722 BolA-like protein V060002_00634 PF05896 V060002_00634 V060002_00634 PF11973 V060002_00634 V060002_00635 PF03116 V060002_00635 V060002_00636 PF04205 FMN-binding domain V060002_00637 PF02508 V060002_00637 V060002_00638 PF02508 V060002_00638 V060002_00639 PF00111 2Fe-2S iron-sulfur cluster binding domain V060002_00639 PF00175 Oxidoreductase NAD-binding domain V060002_00639 PF00970 Oxidoreductase FAD-binding domain V060002_00640 PF02424 ApbE family V060002_00641 PF04400 V060002_00641 V060002_00642 PF00817 impB/mucB/samB family V060002_00642 PF11798 IMS family HHH motif V060002_00642 PF11799 impB/mucB/samB family C-terminal domain V060002_00643 PF11101 V060002_00643 V060002_00645 PF00990 GGDEF domain V060002_00645 PF05228 V060002_00645 V060002_00646 PF00209 Sodium:neurotransmitter symporter family V060002_00647 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family V060002_00648 PF08443 RimK-like ATP-grasp domain V060002_00649 PF05618 Putative ATP-dependant zinc protease V060002_00650 PF01546 Peptidase family M20/M25/M40 V060002_00650 PF07687 Peptidase dimerisation domain V060002_00651 PF00860 Permease family V060002_00652 PF00156 Phosphoribosyl transferase domain V060002_00653 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) V060002_00654 PF07417 Transcriptional regulator Crl V060002_00655 PF00696 Amino acid kinase family V060002_00655 PF01472 PUA domain V060002_00656 PF00171 Aldehyde dehydrogenase family V060002_00657 PF03477 ATP cone domain V060002_00658 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V060002_00658 PF01872 RibD C-terminal domain V060002_00659 PF00677 Lumazine binding domain V060002_00660 PF00925 GTP cyclohydrolase II V060002_00660 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V060002_00661 PF00885 6,7-dimethyl-8-ribityllumazine synthase V060002_00662 PF01029 NusB family V060002_00663 PF00586 AIR synthase related protein, N-terminal domain V060002_00663 PF02769 AIR synthase related protein, C-terminal domain V060002_00664 PF04608 Phosphatidylglycerophosphatase A V060002_00665 PF11944 V060002_00665 V060002_00666 PF01909 Nucleotidyltransferase domain V060002_00666 PF01966 HD domain V060002_00666 PF08335 GlnD PII-uridylyltransferase V060002_00667 PF00557 Metallopeptidase family M24 V060002_00668 PF00318 Ribosomal protein S2 V060002_00669 PF00889 Elongation factor TS V060002_00670 PF00696 Amino acid kinase family V060002_00671 PF01765 Ribosome recycling factor V060002_00672 PF01255 Putative undecaprenyl diphosphate synthase V060002_00673 PF01148 Cytidylyltransferase family V060002_00674 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase V060002_00674 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal V060002_00674 PF13288 DXP reductoisomerase C-terminal domain V060002_00675 PF00595 PDZ domain (Also known as DHR or GLGF) V060002_00675 PF02163 Peptidase family M50 V060002_00676 PF01103 Surface antigen V060002_00676 PF07244 Surface antigen variable number repeat V060002_00677 PF03938 Outer membrane protein (OmpH-like) V060002_00678 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_00678 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD V060002_00678 PF14602 Hexapeptide repeat of succinyl-transferase V060002_00679 PF07977 FabA-like domain V060002_00680 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_00680 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 V060002_00681 PF02684 V060002_00681 V060002_00682 PF01351 Ribonuclease HII V060002_00683 PF01336 OB-fold nucleic acid binding domain V060002_00683 PF02811 PHP domain V060002_00683 PF07733 Bacterial DNA polymerase III alpha subunit V060002_00683 PF14579 Helix-hairpin-helix motif V060002_00684 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit V060002_00685 PF01171 PP-loop family V060002_00685 PF09179 TilS substrate binding domain V060002_00685 PF11734 TilS substrate C-terminal domain V060002_00686 PF00034 Cytochrome c V060002_00687 PF05870 Phenolic acid decarboxylase (PAD) V060002_00688 PF00543 Nitrogen regulatory protein P-II V060002_00689 PF03372 Endonuclease/Exonuclease/phosphatase family V060002_00690 PF01464 Transglycosylase SLT domain V060002_00690 PF01476 LysM domain V060002_00691 PF00753 Metallo-beta-lactamase superfamily V060002_00691 PF16123 V060002_00691 V060002_00692 PF08241 Methyltransferase domain V060002_00693 PF00075 RNase H V060002_00694 PF00929 Exonuclease V060002_00696 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V060002_00696 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V060002_00696 PF09317 V060002_00696 V060002_00697 PF13580 SIS domain V060002_00698 PF13230 Glutamine amidotransferases class-II V060002_00699 PF00551 Formyl transferase V060002_00700 PF00586 AIR synthase related protein, N-terminal domain V060002_00700 PF02769 AIR synthase related protein, C-terminal domain V060002_00701 PF14681 Uracil phosphoribosyltransferase V060002_00703 PF00990 GGDEF domain V060002_00703 PF02743 Cache domain V060002_00704 PF00849 RNA pseudouridylate synthase V060002_00704 PF01479 S4 domain V060002_00705 PF01713 Smr domain V060002_00706 PF11346 V060002_00706 V060002_00708 PF01963 V060002_00708 V060002_00709 PF00728 Glycosyl hydrolase family 20, catalytic domain V060002_00709 PF02838 Glycosyl hydrolase family 20, domain 2 V060002_00709 PF03173 Putative carbohydrate binding domain V060002_00709 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain V060002_00710 PF04214 V060002_00710 V060002_00711 PF00122 E1-E2 ATPase V060002_00711 PF00403 Heavy-metal-associated domain V060002_00711 PF00702 haloacid dehalogenase-like hydrolase V060002_00712 PF00749 tRNA synthetases class I (E and Q), catalytic domain V060002_00713 PF00691 OmpA family V060002_00713 PF01389 OmpA-like transmembrane domain V060002_00715 PF07715 TonB-dependent Receptor Plug Domain V060002_00716 PF04954 Siderophore-interacting protein V060002_00716 PF08021 Siderophore-interacting FAD-binding domain V060002_00717 PF00501 AMP-binding enzyme V060002_00717 PF00550 Phosphopantetheine attachment site V060002_00717 PF00668 Condensation domain V060002_00717 PF13193 AMP-binding enzyme C-terminal domain V060002_00718 PF16538 V060002_00718 V060002_00718 PF16539 V060002_00718 V060002_00718 PF16548 V060002_00718 V060002_00720 PF02169 LPP20 lipoprotein V060002_00721 PF05130 FlgN protein V060002_00722 PF04316 Anti-sigma-28 factor, FlgM V060002_00723 PF13144 SAF-like V060002_00724 PF00072 Response regulator receiver domain V060002_00724 PF01584 CheW-like domain V060002_00725 PF01739 CheR methyltransferase, SAM binding domain V060002_00725 PF03705 CheR methyltransferase, all-alpha domain V060002_00727 PF00460 Flagella basal body rod protein V060002_00727 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V060002_00728 PF03963 V060002_00728 V060002_00728 PF13860 FlgD Ig-like domain V060002_00728 PF13861 FlgD Tudor-like domain V060002_00729 PF00460 Flagella basal body rod protein V060002_00729 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V060002_00729 PF07559 Flagellar basal body protein FlaE V060002_00730 PF00460 Flagella basal body rod protein V060002_00730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V060002_00731 PF00460 Flagella basal body rod protein V060002_00731 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V060002_00732 PF02107 V060002_00732 V060002_00733 PF02119 V060002_00733 V060002_00734 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase V060002_00734 PF10135 V060002_00734 V060002_00735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V060002_00736 PF00669 Bacterial flagellin N-terminal helical region V060002_00736 PF00700 Bacterial flagellin C-terminal helical region V060002_00737 PF00669 Bacterial flagellin N-terminal helical region V060002_00737 PF00700 Bacterial flagellin C-terminal helical region V060002_00737 PF07196 Flagellin hook IN motif V060002_00738 PF00669 Bacterial flagellin N-terminal helical region V060002_00738 PF00700 Bacterial flagellin C-terminal helical region V060002_00738 PF07196 Flagellin hook IN motif V060002_00755 PF01926 50S ribosome-binding GTPase V060002_00755 PF06071 Protein of unknown function (DUF933) V060002_00756 PF01195 Peptidyl-tRNA hydrolase V060002_00757 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase V060002_00757 PF14572 Phosphoribosyl synthetase-associated domain V060002_00758 PF00288 GHMP kinases N terminal domain V060002_00758 PF08544 GHMP kinases C terminal V060002_00759 PF03550 Outer membrane lipoprotein LolB V060002_00760 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain V060002_00760 PF01488 Shikimate / quinate 5-dehydrogenase V060002_00760 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain V060002_00761 PF00472 RF-1 domain V060002_00761 PF03462 PCRF domain V060002_00762 PF13847 Methyltransferase domain V060002_00763 PF04247 V060002_00763 V060002_00764 PF13369 V060002_00764 V060002_00764 PF13371 Tetratricopeptide repeat V060002_00765 PF00793 DAHP synthetase I family V060002_00766 PF00149 Calcineurin-like phosphoesterase V060002_00766 PF02872 5'-nucleotidase, C-terminal domain V060002_00767 PF04073 Aminoacyl-tRNA editing domain V060002_00768 PF00860 Permease family V060002_00769 PF09839 V060002_00769 V060002_00770 PF09842 V060002_00770 V060002_00771 PF03358 NADPH-dependent FMN reductase V060002_00772 PF03960 ArsC family V060002_00773 PF01435 Peptidase family M48 V060002_00773 PF13181 Tetratricopeptide repeat V060002_00773 PF14559 Tetratricopeptide repeat V060002_00774 PF01206 Sulfurtransferase TusA V060002_00775 PF01594 V060002_00775 V060002_00776 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_00776 PF02743 Cache domain V060002_00777 PF00578 AhpC/TSA family V060002_00778 PF13740 ACT domain V060002_00779 PF00701 Dihydrodipicolinate synthetase family V060002_00780 PF06804 NlpB/DapX lipoprotein V060002_00781 PF11446 V060002_00781 V060002_00782 PF02557 D-alanyl-D-alanine carboxypeptidase V060002_00783 PF01546 Peptidase family M20/M25/M40 V060002_00783 PF07687 Peptidase dimerisation domain V060002_00784 PF03960 ArsC family V060002_00785 PF09904 Winged helix-turn helix V060002_00786 PF11169 V060002_00786 V060002_00787 PF11143 V060002_00787 V060002_00788 PF04261 Dyp-type peroxidase family V060002_00789 PF00669 Bacterial flagellin N-terminal helical region V060002_00789 PF00700 Bacterial flagellin C-terminal helical region V060002_00789 PF07196 Flagellin hook IN motif V060002_00790 PF00669 Bacterial flagellin N-terminal helical region V060002_00790 PF00700 Bacterial flagellin C-terminal helical region V060002_00790 PF07196 Flagellin hook IN motif V060002_00791 PF00669 Bacterial flagellin N-terminal helical region V060002_00791 PF00700 Bacterial flagellin C-terminal helical region V060002_00791 PF07196 Flagellin hook IN motif V060002_00792 PF03646 FlaG protein V060002_00793 PF02465 V060002_00793 V060002_00793 PF07195 V060002_00793 V060002_00793 PF07196 Flagellin hook IN motif V060002_00795 PF02561 Flagellar protein FliS V060002_00796 PF00158 Sigma-54 interaction domain V060002_00796 PF02954 Bacterial regulatory protein, Fis family V060002_00796 PF06490 V060002_00796 V060002_00797 PF00512 His Kinase A (phospho-acceptor) domain V060002_00797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00797 PF13188 PAS domain V060002_00798 PF00072 Response regulator receiver domain V060002_00798 PF00158 Sigma-54 interaction domain V060002_00798 PF02954 Bacterial regulatory protein, Fis family V060002_00799 PF02049 V060002_00799 V060002_00800 PF01514 Secretory protein of YscJ/FliF family V060002_00800 PF08345 V060002_00800 V060002_00801 PF01706 FliG C-terminal domain V060002_00801 PF14841 FliG middle domain V060002_00801 PF14842 FliG N-terminal domain V060002_00802 PF02108 V060002_00802 V060002_00803 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V060002_00804 PF02050 Flagellar FliJ protein V060002_00805 PF02120 Flagellar hook-length control protein FliK V060002_00806 PF03748 V060002_00806 V060002_00807 PF01052 Surface presentation of antigens (SPOA) V060002_00807 PF02154 Flagellar motor switch protein FliM V060002_00808 PF01052 Surface presentation of antigens (SPOA) V060002_00809 PF04347 V060002_00809 V060002_00810 PF00813 V060002_00810 V060002_00811 PF01313 V060002_00811 V060002_00812 PF01311 V060002_00812 V060002_00813 PF01312 FlhB HrpN YscU SpaS Family V060002_00814 PF01713 Smr domain V060002_00815 PF05175 Methyltransferase small domain V060002_00816 PF01264 Chorismate synthase V060002_00817 PF03458 V060002_00817 V060002_00818 PF04315 V060002_00818 V060002_00819 PF08891 V060002_00819 V060002_00820 PF03358 NADPH-dependent FMN reductase V060002_00821 PF01266 FAD dependent oxidoreductase V060002_00821 PF05430 S-adenosyl-L-methionine-dependent methyltransferase V060002_00822 PF00109 Beta-ketoacyl synthase, N-terminal domain V060002_00822 PF02801 Beta-ketoacyl synthase, C-terminal domain V060002_00823 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V060002_00823 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V060002_00823 PF11890 Domain of unknown function (DUF3410) V060002_00824 PF01118 Semialdehyde dehydrogenase, NAD binding domain V060002_00824 PF02774 Semialdehyde dehydrogenase, dimerisation domain V060002_00825 PF01475 Ferric uptake regulator family V060002_00826 PF14539 Domain of unknown function (DUF4442) V060002_00827 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00827 PF03466 LysR substrate binding domain V060002_00828 PF03788 V060002_00828 V060002_00829 PF04172 V060002_00829 V060002_00830 PF00258 Flavodoxin V060002_00831 PF10981 V060002_00831 V060002_00832 PF00561 alpha/beta hydrolase fold V060002_00833 PF03925 SeqA protein V060002_00833 PF17206 V060002_00833 V060002_00834 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V060002_00834 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V060002_00834 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V060002_00834 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V060002_00835 PF08907 V060002_00835 V060002_00836 PF01784 NIF3 (NGG1p interacting factor 3) V060002_00837 PF00285 Citrate synthase V060002_00838 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit V060002_00839 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit V060002_00840 PF00890 FAD binding domain V060002_00840 PF02910 Fumarate reductase flavoprotein C-term V060002_00841 PF13085 2Fe-2S iron-sulfur cluster binding domain V060002_00841 PF13534 4Fe-4S dicluster domain V060002_00842 PF00676 Dehydrogenase E1 component V060002_00842 PF02779 Transketolase, pyrimidine binding domain V060002_00842 PF16078 V060002_00842 V060002_00842 PF16870 V060002_00842 V060002_00843 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V060002_00843 PF00364 Biotin-requiring enzyme V060002_00843 PF02817 e3 binding domain V060002_00844 PF00549 CoA-ligase V060002_00844 PF08442 ATP-grasp domain V060002_00845 PF00549 CoA-ligase V060002_00845 PF02629 CoA binding domain V060002_00846 PF00950 V060002_00846 V060002_00847 PF00005 ABC transporter V060002_00848 PF01297 Periplasmic solute binding protein family V060002_00849 PF12833 Helix-turn-helix domain V060002_00850 PF04023 FeoA domain V060002_00851 PF02421 Ferrous iron transport protein B V060002_00851 PF07664 V060002_00851 V060002_00851 PF07670 Nucleoside recognition V060002_00852 PF09012 FeoC like transcriptional regulator V060002_00853 PF01230 HIT domain V060002_00854 PF00750 tRNA synthetases class I (R) V060002_00854 PF03485 Arginyl tRNA synthetase N terminal domain V060002_00854 PF05746 DALR anticodon binding domain V060002_00855 PF06185 YecM protein V060002_00856 PF00675 Insulinase (Peptidase family M16) V060002_00856 PF05193 Peptidase M16 inactive domain V060002_00856 PF16187 V060002_00856 V060002_00857 PF00300 Histidine phosphatase superfamily (branch 1) V060002_00858 PF00771 FHIPEP family V060002_00859 PF00448 SRP54-type protein, GTPase domain V060002_00860 PF10609 ParA/MinD ATPase like V060002_00861 PF04539 Sigma-70 region 3 V060002_00861 PF04542 Sigma-70 region 2 V060002_00861 PF04545 Sigma-70, region 4 V060002_00862 PF00072 Response regulator receiver domain V060002_00863 PF04344 Chemotaxis phosphatase, CheZ V060002_00864 PF01584 CheW-like domain V060002_00864 PF01627 Hpt domain V060002_00864 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00864 PF02895 Signal transducing histidine kinase, homodimeric domain V060002_00865 PF00072 Response regulator receiver domain V060002_00865 PF01339 CheB methylesterase V060002_00866 PF13614 AAA domain V060002_00867 PF01584 CheW-like domain V060002_00868 PF01584 CheW-like domain V060002_00869 PF10975 V060002_00869 V060002_00870 PF00005 ABC transporter V060002_00871 PF03379 V060002_00871 V060002_00872 PF01578 V060002_00872 V060002_00873 PF04995 V060002_00873 V060002_00874 PF03100 CcmE V060002_00875 PF01578 V060002_00875 V060002_00875 PF16327 V060002_00875 V060002_00876 PF08534 Redoxin V060002_00877 PF03918 Cytochrome C biogenesis protein V060002_00878 PF14559 Tetratricopeptide repeat V060002_00879 PF04333 V060002_00879 V060002_00880 PF00106 short chain dehydrogenase V060002_00881 PF11993 V060002_00881 V060002_00882 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V060002_00882 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V060002_00883 PF00462 Glutaredoxin V060002_00884 PF01131 DNA topoisomerase V060002_00884 PF01751 Toprim domain V060002_00885 PF00850 Histone deacetylase domain V060002_00888 PF00884 Sulfatase V060002_00888 PF11893 V060002_00888 V060002_00889 PF07208 Protein of unknown function (DUF1414) V060002_00890 PF04245 V060002_00890 V060002_00891 PF01627 Hpt domain V060002_00892 PF03553 V060002_00892 V060002_00893 PF01118 Semialdehyde dehydrogenase, NAD binding domain V060002_00893 PF02774 Semialdehyde dehydrogenase, dimerisation domain V060002_00894 PF01914 V060002_00894 V060002_00895 PF00171 Aldehyde dehydrogenase family V060002_00895 PF00465 Iron-containing alcohol dehydrogenase V060002_00897 PF00916 V060002_00897 V060002_00897 PF01740 STAS domain V060002_00898 PF00575 S1 RNA binding domain V060002_00898 PF10150 Ribonuclease E/G family V060002_00899 PF00849 RNA pseudouridylate synthase V060002_00899 PF01479 S4 domain V060002_00900 PF02545 Maf-like protein V060002_00901 PF02620 V060002_00901 V060002_00902 PF01783 Ribosomal L32p protein family V060002_00903 PF02504 Fatty acid synthesis protein V060002_00904 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V060002_00904 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V060002_00905 PF00698 Acyl transferase domain V060002_00906 PF13561 Enoyl-(Acyl carrier protein) reductase V060002_00907 PF00550 Phosphopantetheine attachment site V060002_00908 PF00109 Beta-ketoacyl synthase, N-terminal domain V060002_00908 PF02801 Beta-ketoacyl synthase, C-terminal domain V060002_00909 PF01063 Aminotransferase class IV V060002_00910 PF02618 YceG-like family V060002_00911 PF02223 Thymidylate kinase V060002_00912 PF09115 DNA polymerase III, delta subunit, C terminal V060002_00912 PF13177 DNA polymerase III, delta subunit V060002_00913 PF01026 TatD related DNase V060002_00914 PF00367 phosphotransferase system, EIIB V060002_00914 PF02378 Phosphotransferase system, EIIC V060002_00916 PF00209 Sodium:neurotransmitter symporter family V060002_00919 PF01734 Patatin-like phospholipase V060002_00920 PF00224 Pyruvate kinase, barrel domain V060002_00920 PF02887 Pyruvate kinase, alpha/beta domain V060002_00921 PF00480 ROK family V060002_00922 PF00072 Response regulator receiver domain V060002_00922 PF01584 CheW-like domain V060002_00924 PF04187 Protein of unknown function, DUF399 V060002_00925 PF13847 Methyltransferase domain V060002_00926 PF11059 V060002_00926 V060002_00927 PF01263 Aldose 1-epimerase V060002_00928 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V060002_00928 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V060002_00929 PF01641 SelR domain V060002_00930 PF11207 V060002_00930 V060002_00931 PF07023 V060002_00931 V060002_00932 PF00710 Asparaginase V060002_00933 PF01343 Peptidase family S49 V060002_00934 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V060002_00934 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_00935 PF00551 Formyl transferase V060002_00935 PF01842 ACT domain V060002_00937 PF13307 Helicase C-terminal domain V060002_00938 PF00814 Glycoprotease family V060002_00940 PF03843 V060002_00940 V060002_00941 PF12697 Alpha/beta hydrolase family V060002_00942 PF00501 AMP-binding enzyme V060002_00942 PF13193 AMP-binding enzyme C-terminal domain V060002_00943 PF00570 HRDC domain V060002_00943 PF01612 3'-5' exonuclease V060002_00944 PF01432 Peptidase family M3 V060002_00945 PF01694 Rhomboid family V060002_00946 PF03942 V060002_00946 V060002_00947 PF01966 HD domain V060002_00947 PF13286 Phosphohydrolase-associated domain V060002_00948 PF13023 HD domain V060002_00949 PF00155 Aminotransferase class I and II V060002_00950 PF00425 chorismate binding enzyme V060002_00951 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V060002_00951 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V060002_00951 PF16582 V060002_00951 V060002_00952 PF12697 Alpha/beta hydrolase family V060002_00953 PF00378 Enoyl-CoA hydratase/isomerase family V060002_00954 PF13378 Enolase C-terminal domain-like V060002_00955 PF00501 AMP-binding enzyme V060002_00956 PF03594 V060002_00956 V060002_00957 PF01381 Helix-turn-helix V060002_00958 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_00958 PF00672 HAMP domain V060002_00959 PF01553 Acyltransferase V060002_00959 PF07690 Major Facilitator Superfamily V060002_00960 PF13305 WHG domain V060002_00962 PF04280 Tim44-like domain V060002_00962 PF07466 V060002_00962 V060002_00963 PF06844 Protein of unknown function (DUF1244) V060002_00964 PF04170 NlpE N-terminal domain V060002_00965 PF03776 Septum formation topological specificity factor MinE V060002_00966 PF13614 AAA domain V060002_00967 PF03775 Septum formation inhibitor MinC, C-terminal domain V060002_00967 PF05209 Septum formation inhibitor MinC, N-terminal domain V060002_00968 PF05166 YcgL domain V060002_00969 PF13406 Transglycosylase SLT domain V060002_00970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00970 PF03466 LysR substrate binding domain V060002_00971 PF01773 Na+ dependent nucleoside transporter N-terminus V060002_00971 PF07662 Na+ dependent nucleoside transporter C-terminus V060002_00971 PF07670 Nucleoside recognition V060002_00972 PF00704 Glycosyl hydrolases family 18 V060002_00973 PF03264 NapC/NirT cytochrome c family, N-terminal region V060002_00974 PF00384 Molybdopterin oxidoreductase V060002_00974 PF01568 Molydopterin dinucleotide binding domain V060002_00975 PF02668 Taurine catabolism dioxygenase TauD, TfdA family V060002_00975 PF05141 Pyoverdine/dityrosine biosynthesis protein V060002_00976 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_00976 PF03466 LysR substrate binding domain V060002_00978 PF01494 FAD binding domain V060002_00979 PF02668 Taurine catabolism dioxygenase TauD, TfdA family V060002_00980 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain V060002_00980 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain V060002_00982 PF10129 V060002_00982 V060002_00983 PF12710 haloacid dehalogenase-like hydrolase V060002_00984 PF01810 V060002_00984 V060002_00985 PF13279 Thioesterase-like superfamily V060002_00986 PF01553 Acyltransferase V060002_00987 PF01148 Cytidylyltransferase family V060002_00988 PF01066 CDP-alcohol phosphatidyltransferase V060002_00989 PF00563 EAL domain V060002_00989 PF00990 GGDEF domain V060002_00992 PF02696 V060002_00992 V060002_00993 PF03480 Bacterial extracellular solute-binding protein, family 7 V060002_00994 PF04290 V060002_00994 V060002_00995 PF06808 V060002_00995 V060002_00996 PF00072 Response regulator receiver domain V060002_00996 PF00158 Sigma-54 interaction domain V060002_00996 PF02954 Bacterial regulatory protein, Fis family V060002_00997 PF00512 His Kinase A (phospho-acceptor) domain V060002_00997 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_00998 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V060002_00998 PF05697 Bacterial trigger factor protein (TF) V060002_00998 PF05698 Bacterial trigger factor protein (TF) C-terminus V060002_00999 PF00574 Clp protease V060002_01000 PF06689 ClpX C4-type zinc finger V060002_01000 PF07724 AAA domain (Cdc48 subfamily) V060002_01000 PF10431 C-terminal, D2-small domain, of ClpB protein V060002_01001 PF00004 ATPase family associated with various cellular activities (AAA) V060002_01001 PF02190 ATP-dependent protease La (LON) domain V060002_01001 PF05362 Lon protease (S16) C-terminal proteolytic domain V060002_01002 PF00216 Bacterial DNA-binding protein V060002_01003 PF13616 PPIC-type PPIASE domain V060002_01003 PF13624 SurA N-terminal domain V060002_01004 PF12836 Helix-hairpin-helix motif V060002_01005 PF02224 Cytidylate kinase V060002_01006 PF00575 S1 RNA binding domain V060002_01007 PF00216 Bacterial DNA-binding protein V060002_01008 PF06305 V060002_01008 V060002_01009 PF13176 Tetratricopeptide repeat V060002_01010 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family V060002_01011 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) V060002_01013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01013 PF03466 LysR substrate binding domain V060002_01014 PF13679 V060002_01014 V060002_01015 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V060002_01015 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V060002_01016 PF01037 AsnC family V060002_01016 PF13412 Winged helix-turn-helix DNA-binding V060002_01017 PF01580 FtsK/SpoIIIE family V060002_01017 PF09397 Ftsk gamma domain V060002_01017 PF13491 V060002_01017 V060002_01018 PF02600 Disulfide bond formation protein DsbB V060002_01019 PF06450 V060002_01019 V060002_01020 PF00392 Bacterial regulatory proteins, gntR family V060002_01020 PF07840 FadR C-terminal domain V060002_01021 PF09002 Domain of unknown function (DUF1887) V060002_01022 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01023 PF01230 HIT domain V060002_01025 PF07233 Protein of unknown function (DUF1425) V060002_01026 PF13036 Protein of unknown function (DUF3897) V060002_01027 PF01636 Phosphotransferase enzyme family V060002_01028 PF05728 Uncharacterised protein family (UPF0227) V060002_01029 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_01030 PF13302 Acetyltransferase (GNAT) domain V060002_01031 PF16458 V060002_01031 V060002_01032 PF10972 V060002_01032 V060002_01033 PF00270 DEAD/DEAH box helicase V060002_01033 PF00271 Helicase conserved C-terminal domain V060002_01033 PF02559 CarD-like/TRCF domain V060002_01033 PF03461 TRCF domain V060002_01035 PF02687 V060002_01035 V060002_01035 PF12704 MacB-like periplasmic core domain V060002_01036 PF00005 ABC transporter V060002_01037 PF02687 V060002_01037 V060002_01037 PF12704 MacB-like periplasmic core domain V060002_01038 PF09835 V060002_01038 V060002_01039 PF00753 Metallo-beta-lactamase superfamily V060002_01039 PF03772 V060002_01039 V060002_01039 PF13567 V060002_01039 V060002_01040 PF00005 ABC transporter V060002_01040 PF00664 ABC transporter transmembrane region V060002_01041 PF02606 Tetraacyldisaccharide-1-P 4'-kinase V060002_01042 PF03966 Trm112p-like protein V060002_01043 PF02348 Cytidylyltransferase V060002_01044 PF04293 V060002_01044 V060002_01045 PF04285 V060002_01045 V060002_01046 PF06798 V060002_01046 V060002_01046 PF08298 PrkA AAA domain V060002_01047 PF03887 YfbU domain V060002_01048 PF01891 Cobalt uptake substrate-specific transmembrane region V060002_01049 PF04055 Radical SAM superfamily V060002_01049 PF13353 4Fe-4S single cluster domain V060002_01050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01051 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) V060002_01052 PF01228 Glycine radical V060002_01052 PF02901 Pyruvate formate lyase V060002_01053 PF11840 V060002_01053 V060002_01055 PF00005 ABC transporter V060002_01056 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_01057 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01058 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01059 PF03372 Endonuclease/Exonuclease/phosphatase family V060002_01060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01060 PF00672 HAMP domain V060002_01061 PF10689 V060002_01061 V060002_01062 PF07445 Primosomal replication protein priB and priC V060002_01063 PF01925 V060002_01063 V060002_01064 PF06733 DEAD_2 V060002_01064 PF13307 Helicase C-terminal domain V060002_01065 PF13609 Gram-negative porin V060002_01066 PF09829 V060002_01066 V060002_01067 PF02810 SEC-C motif V060002_01068 PF00563 EAL domain V060002_01068 PF08668 HDOD domain V060002_01069 PF00149 Calcineurin-like phosphoesterase V060002_01070 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V060002_01071 PF01406 tRNA synthetases class I (C) catalytic domain V060002_01071 PF09190 DALR domain V060002_01072 PF02075 Crossover junction endodeoxyribonuclease RuvC V060002_01073 PF01330 RuvA N terminal domain V060002_01073 PF07499 RuvA, C-terminal domain V060002_01073 PF14520 Helix-hairpin-helix domain V060002_01074 PF05491 Holliday junction DNA helicase ruvB C-terminus V060002_01074 PF05496 Holliday junction DNA helicase ruvB N-terminus V060002_01076 PF01654 V060002_01076 V060002_01077 PF02322 V060002_01077 V060002_01078 PF08173 V060002_01078 V060002_01079 PF03061 Thioesterase superfamily V060002_01080 PF01618 V060002_01080 V060002_01081 PF02472 Biopolymer transport protein ExbD/TolR V060002_01082 PF06519 TolA C-terminal V060002_01083 PF04052 TolB amino-terminal domain V060002_01083 PF07676 WD40-like Beta Propeller Repeat V060002_01084 PF00691 OmpA family V060002_01085 PF13174 Tetratricopeptide repeat V060002_01085 PF13432 Tetratricopeptide repeat V060002_01085 PF16331 V060002_01085 V060002_01086 PF02445 Quinolinate synthetase A protein V060002_01087 PF03695 Uncharacterised protein family (UPF0149) V060002_01088 PF00072 Response regulator receiver domain V060002_01088 PF00512 His Kinase A (phospho-acceptor) domain V060002_01088 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01088 PF02743 Cache domain V060002_01089 PF06610 V060002_01089 V060002_01090 PF01238 Phosphomannose isomerase type I V060002_01091 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V060002_01091 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V060002_01091 PF02378 Phosphotransferase system, EIIC V060002_01092 PF12833 Helix-turn-helix domain V060002_01093 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V060002_01093 PF00381 PTS HPr component phosphorylation site V060002_01094 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V060002_01095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V060002_01095 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V060002_01095 PF02378 Phosphotransferase system, EIIC V060002_01096 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V060002_01097 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V060002_01098 PF00171 Aldehyde dehydrogenase family V060002_01099 PF00158 Sigma-54 interaction domain V060002_01099 PF01590 GAF domain V060002_01099 PF02954 Bacterial regulatory protein, Fis family V060002_01100 PF09905 Uncharacterized conserved protein (DUF2132) V060002_01101 PF00106 short chain dehydrogenase V060002_01102 PF00875 DNA photolyase V060002_01102 PF03441 FAD binding domain of DNA photolyase V060002_01103 PF04134 V060002_01103 V060002_01104 PF01936 NYN domain V060002_01105 PF11661 V060002_01105 V060002_01106 PF05930 Prophage CP4-57 regulatory protein (AlpA) V060002_01109 PF01926 50S ribosome-binding GTPase V060002_01110 PF10980 Protein of unknown function (DUF2787) V060002_01114 PF09339 IclR helix-turn-helix domain V060002_01116 PF00665 Integrase core domain V060002_01117 PF13401 AAA domain V060002_01120 PF08765 Mor transcription activator family V060002_01121 PF08765 Mor transcription activator family V060002_01124 PF10109 V060002_01124 V060002_01126 PF01527 Transposase V060002_01127 PF00665 Integrase core domain V060002_01129 PF09997 V060002_01129 V060002_01130 PF00226 DnaJ domain V060002_01130 PF12339 V060002_01130 V060002_01131 PF09818 Predicted ATPase of the ABC class V060002_01132 PF00563 EAL domain V060002_01132 PF00990 GGDEF domain V060002_01132 PF01590 GAF domain V060002_01133 PF07055 Enoyl reductase FAD binding domain V060002_01133 PF12241 Trans-2-enoyl-CoA reductase catalytic region V060002_01133 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V060002_01134 PF13472 GDSL-like Lipase/Acylhydrolase family V060002_01135 PF00005 ABC transporter V060002_01136 PF02687 V060002_01136 V060002_01137 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain V060002_01137 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain V060002_01137 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain V060002_01138 PF01266 FAD dependent oxidoreductase V060002_01139 PF02626 Allophanate hydrolase subunit 2 V060002_01140 PF02682 Allophanate hydrolase subunit 1 V060002_01141 PF03746 LamB/YcsF family V060002_01142 PF16363 V060002_01142 V060002_01143 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01144 PF03222 Tryptophan/tyrosine permease family V060002_01146 PF04336 V060002_01146 V060002_01147 PF00270 DEAD/DEAH box helicase V060002_01147 PF00271 Helicase conserved C-terminal domain V060002_01148 PF00440 Bacterial regulatory proteins, tetR family V060002_01149 PF00034 Cytochrome c V060002_01150 PF01212 Beta-eliminating lyase V060002_01151 PF00293 NUDIX domain V060002_01152 PF07728 AAA domain (dynein-related subfamily) V060002_01152 PF12592 Protein of unknown function (DUF3763) V060002_01153 PF05762 VWA domain containing CoxE-like protein V060002_01155 PF00005 ABC transporter V060002_01156 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_01157 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01158 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01159 PF03466 LysR substrate binding domain V060002_01160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_01163 PF01764 Lipase (class 3) V060002_01164 PF07690 Major Facilitator Superfamily V060002_01165 PF00085 Thioredoxin V060002_01166 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V060002_01166 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V060002_01167 PF02754 V060002_01167 V060002_01167 PF13183 4Fe-4S dicluster domain V060002_01168 PF00890 FAD binding domain V060002_01169 PF01266 FAD dependent oxidoreductase V060002_01169 PF04324 BFD-like [2Fe-2S] binding domain V060002_01170 PF00230 Major intrinsic protein V060002_01171 PF00370 FGGY family of carbohydrate kinases, N-terminal domain V060002_01171 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V060002_01172 PF10688 V060002_01172 V060002_01174 PF04363 V060002_01174 V060002_01176 PF04337 Protein of unknown function, DUF480 V060002_01177 PF01541 GIY-YIG catalytic domain V060002_01178 PF13729 V060002_01178 V060002_01179 PF13407 Periplasmic binding protein domain V060002_01180 PF00072 Response regulator receiver domain V060002_01180 PF00512 His Kinase A (phospho-acceptor) domain V060002_01180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01180 PF09308 LuxQ, periplasmic V060002_01181 PF07238 PilZ domain V060002_01181 PF12945 Flagellar protein YcgR V060002_01183 PF04076 Bacterial OB fold (BOF) protein V060002_01185 PF13289 V060002_01185 V060002_01187 PF13175 AAA ATPase domain V060002_01188 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain V060002_01188 PF07685 CobB/CobQ-like glutamine amidotransferase domain V060002_01189 PF13531 Bacterial extracellular solute-binding protein V060002_01190 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01191 PF00005 ABC transporter V060002_01191 PF03459 TOBE domain V060002_01192 PF00368 Hydroxymethylglutaryl-coenzyme A reductase V060002_01195 PF07700 Heme NO binding V060002_01196 PF00512 His Kinase A (phospho-acceptor) domain V060002_01196 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01197 PF12805 V060002_01197 V060002_01197 PF13515 V060002_01197 V060002_01198 PF00580 UvrD/REP helicase N-terminal domain V060002_01198 PF12462 V060002_01198 V060002_01198 PF13361 UvrD-like helicase C-terminal domain V060002_01199 PF01292 Prokaryotic cytochrome b561 V060002_01200 PF13670 V060002_01200 V060002_01201 PF01219 Prokaryotic diacylglycerol kinase V060002_01202 PF00857 Isochorismatase family V060002_01203 PF02142 MGS-like domain V060002_01204 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V060002_01205 PF00072 Response regulator receiver domain V060002_01205 PF00512 His Kinase A (phospho-acceptor) domain V060002_01205 PF00672 HAMP domain V060002_01205 PF01627 Hpt domain V060002_01205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01206 PF00224 Pyruvate kinase, barrel domain V060002_01206 PF02887 Pyruvate kinase, alpha/beta domain V060002_01207 PF07690 Major Facilitator Superfamily V060002_01209 PF13343 Bacterial extracellular solute-binding protein V060002_01210 PF00512 His Kinase A (phospho-acceptor) domain V060002_01210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01211 PF00072 Response regulator receiver domain V060002_01211 PF02954 Bacterial regulatory protein, Fis family V060002_01211 PF14532 Sigma-54 interaction domain V060002_01212 PF07947 V060002_01212 V060002_01213 PF00465 Iron-containing alcohol dehydrogenase V060002_01214 PF00704 Glycosyl hydrolases family 18 V060002_01214 PF06483 V060002_01214 V060002_01215 PF00483 Nucleotidyl transferase V060002_01216 PF00990 GGDEF domain V060002_01216 PF13426 PAS domain V060002_01219 PF02355 Protein export membrane protein V060002_01219 PF07549 SecD/SecF GG Motif V060002_01219 PF13721 SecD export protein N-terminal TM region V060002_01220 PF02355 Protein export membrane protein V060002_01220 PF07549 SecD/SecF GG Motif V060002_01221 PF13561 Enoyl-(Acyl carrier protein) reductase V060002_01222 PF00108 Thiolase, N-terminal domain V060002_01222 PF02803 Thiolase, C-terminal domain V060002_01223 PF09361 V060002_01223 V060002_01224 PF07167 V060002_01224 V060002_01225 PF00005 ABC transporter V060002_01225 PF08402 TOBE domain V060002_01226 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01227 PF13343 Bacterial extracellular solute-binding protein V060002_01228 PF07690 Major Facilitator Superfamily V060002_01229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01229 PF05231 V060002_01229 V060002_01229 PF07730 Histidine kinase V060002_01230 PF00072 Response regulator receiver domain V060002_01230 PF00196 Bacterial regulatory proteins, luxR family V060002_01231 PF01966 HD domain V060002_01232 PF09574 V060002_01232 V060002_01233 PF03264 NapC/NirT cytochrome c family, N-terminal region V060002_01234 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) V060002_01235 PF00384 Molybdopterin oxidoreductase V060002_01235 PF01568 Molydopterin dinucleotide binding domain V060002_01235 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V060002_01236 PF03927 NapD protein V060002_01237 PF12838 4Fe-4S dicluster domain V060002_01238 PF00672 HAMP domain V060002_01238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01238 PF07730 Histidine kinase V060002_01238 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term V060002_01239 PF00072 Response regulator receiver domain V060002_01239 PF00196 Bacterial regulatory proteins, luxR family V060002_01240 PF00356 Bacterial regulatory proteins, lacI family V060002_01240 PF13377 Periplasmic binding protein-like domain V060002_01242 PF12680 SnoaL-like domain V060002_01243 PF07690 Major Facilitator Superfamily V060002_01244 PF00474 Sodium:solute symporter family V060002_01245 PF03313 V060002_01245 V060002_01245 PF03315 Serine dehydratase beta chain V060002_01246 PF03606 V060002_01246 V060002_01247 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01248 PF13419 Haloacid dehalogenase-like hydrolase V060002_01249 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V060002_01249 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V060002_01250 PF00691 OmpA family V060002_01251 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01251 PF08447 PAS fold V060002_01252 PF01266 FAD dependent oxidoreductase V060002_01252 PF16901 V060002_01252 V060002_01253 PF00294 pfkB family carbohydrate kinase V060002_01254 PF00251 Glycosyl hydrolases family 32 N-terminal domain V060002_01254 PF08244 Glycosyl hydrolases family 32 C terminal V060002_01255 PF00356 Bacterial regulatory proteins, lacI family V060002_01255 PF13377 Periplasmic binding protein-like domain V060002_01256 PF00367 phosphotransferase system, EIIB V060002_01256 PF02378 Phosphotransferase system, EIIC V060002_01257 PF11269 Protein of unknown function (DUF3069) V060002_01258 PF09335 V060002_01258 V060002_01261 PF05742 V060002_01261 V060002_01262 PF04945 YHS domain V060002_01263 PF01553 Acyltransferase V060002_01263 PF13444 Acetyltransferase (GNAT) domain V060002_01265 PF00581 Rhodanese-like domain V060002_01265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V060002_01265 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_01266 PF11127 Protein of unknown function (DUF2892) V060002_01267 PF01022 Bacterial regulatory protein, arsR family V060002_01268 PF04143 V060002_01268 V060002_01270 PF16576 V060002_01270 V060002_01271 PF00873 AcrB/AcrD/AcrF family V060002_01272 PF00881 Nitroreductase family V060002_01273 PF03992 Antibiotic biosynthesis monooxygenase V060002_01274 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01274 PF03466 LysR substrate binding domain V060002_01275 PF12847 Methyltransferase domain V060002_01276 PF06942 V060002_01276 V060002_01277 PF00293 NUDIX domain V060002_01278 PF13302 Acetyltransferase (GNAT) domain V060002_01279 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V060002_01279 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V060002_01280 PF05145 V060002_01280 V060002_01281 PF02810 SEC-C motif V060002_01281 PF08378 V060002_01281 V060002_01282 PF00588 SpoU rRNA Methylase family V060002_01283 PF00593 TonB dependent receptor V060002_01283 PF07715 TonB-dependent Receptor Plug Domain V060002_01284 PF00456 Transketolase, thiamine diphosphate binding domain V060002_01284 PF02779 Transketolase, pyrimidine binding domain V060002_01284 PF02780 Transketolase, C-terminal domain V060002_01285 PF00923 Transaldolase V060002_01286 PF04198 Putative sugar-binding domain V060002_01287 PF00581 Rhodanese-like domain V060002_01289 PF00899 ThiF family V060002_01290 PF00994 Probable molybdopterin binding domain V060002_01290 PF03453 MoeA N-terminal region (domain I and II) V060002_01290 PF03454 MoeA C-terminal region (domain IV) V060002_01291 PF01227 GTP cyclohydrolase I V060002_01292 PF01625 Peptide methionine sulfoxide reductase V060002_01292 PF01641 SelR domain V060002_01293 PF01268 Formate--tetrahydrofolate ligase V060002_01294 PF01741 Large-conductance mechanosensitive channel, MscL V060002_01297 PF13419 Haloacid dehalogenase-like hydrolase V060002_01298 PF01272 Transcription elongation factor, GreA/GreB, C-term V060002_01298 PF14760 Rnk N-terminus V060002_01299 PF13419 Haloacid dehalogenase-like hydrolase V060002_01300 PF00202 Aminotransferase class-III V060002_01301 PF00266 Aminotransferase class-V V060002_01302 PF13343 Bacterial extracellular solute-binding protein V060002_01303 PF00005 ABC transporter V060002_01304 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01305 PF00392 Bacterial regulatory proteins, gntR family V060002_01305 PF07702 UTRA domain V060002_01306 PF00892 EamA-like transporter family V060002_01307 PF07690 Major Facilitator Superfamily V060002_01308 PF02698 DUF218 domain V060002_01309 PF03891 V060002_01309 V060002_01311 PF00293 NUDIX domain V060002_01312 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_01313 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01314 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01314 PF12911 V060002_01314 V060002_01315 PF00005 ABC transporter V060002_01315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_01316 PF03479 Domain of unknown function (DUF296) V060002_01317 PF00440 Bacterial regulatory proteins, tetR family V060002_01318 PF13410 Glutathione S-transferase, C-terminal domain V060002_01318 PF13417 Glutathione S-transferase, N-terminal domain V060002_01319 PF00043 Glutathione S-transferase, C-terminal domain V060002_01319 PF02798 Glutathione S-transferase, N-terminal domain V060002_01320 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_01321 PF13275 S4 domain V060002_01322 PF01435 Peptidase family M48 V060002_01323 PF03061 Thioesterase superfamily V060002_01324 PF11869 V060002_01324 V060002_01325 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_01325 PF12793 V060002_01325 V060002_01326 PF00593 TonB dependent receptor V060002_01326 PF07715 TonB-dependent Receptor Plug Domain V060002_01327 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01327 PF03466 LysR substrate binding domain V060002_01328 PF00583 Acetyltransferase (GNAT) family V060002_01328 PF13380 CoA binding domain V060002_01328 PF13549 ATP-grasp domain V060002_01328 PF13607 Succinyl-CoA ligase like flavodoxin domain V060002_01329 PF05036 Sporulation related domain V060002_01330 PF01820 D-ala D-ala ligase N-terminus V060002_01330 PF07478 D-ala D-ala ligase C-terminus V060002_01331 PF11782 V060002_01331 V060002_01332 PF01253 Translation initiation factor SUI1 V060002_01333 PF01376 Heat-labile enterotoxin beta chain V060002_01334 PF01375 Heat-labile enterotoxin alpha chain V060002_01335 PF05707 Zonular occludens toxin (Zot) V060002_01336 PF10734 V060002_01336 V060002_01337 PF16710 V060002_01337 V060002_01340 PF07459 V060002_01340 V060002_01341 PF02486 V060002_01341 V060002_01342 PF01381 Helix-turn-helix V060002_01343 PF01376 Heat-labile enterotoxin beta chain V060002_01344 PF01375 Heat-labile enterotoxin alpha chain V060002_01345 PF05707 Zonular occludens toxin (Zot) V060002_01346 PF10734 V060002_01346 V060002_01347 PF16710 V060002_01347 V060002_01350 PF07459 V060002_01350 V060002_01351 PF02486 V060002_01351 V060002_01352 PF01381 Helix-turn-helix V060002_01353 PF03701 V060002_01353 V060002_01354 PF13729 V060002_01354 V060002_01355 PF11060 V060002_01355 V060002_01356 PF00072 Response regulator receiver domain V060002_01356 PF00486 Transcriptional regulatory protein, C terminal V060002_01357 PF00512 His Kinase A (phospho-acceptor) domain V060002_01357 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01357 PF11884 Domain of unknown function (DUF3404) V060002_01358 PF02233 NAD(P) transhydrogenase beta subunit V060002_01359 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V060002_01359 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V060002_01359 PF12769 Domain of unknown function (DUF3814) V060002_01360 PF10115 V060002_01360 V060002_01361 PF10719 V060002_01361 V060002_01362 PF00990 GGDEF domain V060002_01363 PF11557 V060002_01363 V060002_01364 PF01019 Gamma-glutamyltranspeptidase V060002_01366 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_01366 PF00990 GGDEF domain V060002_01367 PF11810 V060002_01367 V060002_01368 PF07690 Major Facilitator Superfamily V060002_01369 PF06934 V060002_01369 V060002_01371 PF02163 Peptidase family M50 V060002_01372 PF03831 PhnA protein V060002_01372 PF08274 PhnA Zinc-Ribbon V060002_01374 PF03741 V060002_01374 V060002_01376 PF00149 Calcineurin-like phosphoesterase V060002_01376 PF02872 5'-nucleotidase, C-terminal domain V060002_01377 PF11398 Protein of unknown function (DUF2813) V060002_01378 PF06496 V060002_01378 V060002_01379 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01379 PF03466 LysR substrate binding domain V060002_01380 PF00571 CBS domain V060002_01380 PF01226 Formate/nitrite transporter V060002_01381 PF04264 YceI-like domain V060002_01382 PF01292 Prokaryotic cytochrome b561 V060002_01384 PF00563 EAL domain V060002_01386 PF09335 V060002_01386 V060002_01387 PF02416 mttA/Hcf106 family V060002_01388 PF00072 Response regulator receiver domain V060002_01388 PF00486 Transcriptional regulatory protein, C terminal V060002_01389 PF00512 His Kinase A (phospho-acceptor) domain V060002_01389 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01389 PF13493 Domain of unknown function (DUF4118) V060002_01390 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase V060002_01390 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg V060002_01390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V060002_01390 PF10371 Domain of unknown function V060002_01390 PF12838 4Fe-4S dicluster domain V060002_01390 PF17147 V060002_01390 V060002_01391 PF02705 V060002_01391 V060002_01392 PF01926 50S ribosome-binding GTPase V060002_01393 PF02492 CobW/HypB/UreG, nucleotide-binding domain V060002_01394 PF00654 Voltage gated chloride channel V060002_01395 PF03595 Voltage-dependent anion channel V060002_01396 PF00155 Aminotransferase class I and II V060002_01397 PF00072 Response regulator receiver domain V060002_01397 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01398 PF13476 AAA domain V060002_01398 PF13558 Putative exonuclease SbcCD, C subunit V060002_01399 PF00149 Calcineurin-like phosphoesterase V060002_01399 PF12320 Type 5 capsule protein repressor C-terminal domain V060002_01400 PF00356 Bacterial regulatory proteins, lacI family V060002_01400 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V060002_01401 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V060002_01401 PF00381 PTS HPr component phosphorylation site V060002_01402 PF00294 pfkB family carbohydrate kinase V060002_01403 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V060002_01403 PF02378 Phosphotransferase system, EIIC V060002_01404 PF05618 Putative ATP-dependant zinc protease V060002_01405 PF00155 Aminotransferase class I and II V060002_01406 PF13353 4Fe-4S single cluster domain V060002_01407 PF03477 ATP cone domain V060002_01407 PF13597 Anaerobic ribonucleoside-triphosphate reductase V060002_01408 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase V060002_01409 PF00665 Integrase core domain V060002_01410 PF01527 Transposase V060002_01412 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_01413 PF00583 Acetyltransferase (GNAT) family V060002_01414 PF04221 RelB antitoxin V060002_01415 PF05016 Plasmid stabilisation system protein V060002_01417 PF10387 Protein of unknown function (DUF2442) V060002_01418 PF13711 V060002_01418 V060002_01419 PF13417 Glutathione S-transferase, N-terminal domain V060002_01420 PF12686 V060002_01420 V060002_01422 PF01797 Transposase IS200 like V060002_01425 PF07859 alpha/beta hydrolase fold V060002_01426 PF05016 Plasmid stabilisation system protein V060002_01427 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system V060002_01428 PF13508 Acetyltransferase (GNAT) domain V060002_01429 PF08681 Protein of unknown function (DUF1778) V060002_01430 PF03819 MazG nucleotide pyrophosphohydrolase domain V060002_01433 PF08681 Protein of unknown function (DUF1778) V060002_01434 PF13673 Acetyltransferase (GNAT) domain V060002_01435 PF00583 Acetyltransferase (GNAT) family V060002_01436 PF05016 Plasmid stabilisation system protein V060002_01437 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system V060002_01438 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_01440 PF13673 Acetyltransferase (GNAT) domain V060002_01442 PF01609 Transposase DDE domain V060002_01442 PF05598 V060002_01442 V060002_01444 PF13673 Acetyltransferase (GNAT) domain V060002_01445 PF15731 V060002_01445 V060002_01446 PF06296 V060002_01446 V060002_01448 PF06945 V060002_01448 V060002_01451 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_01455 PF10987 V060002_01455 V060002_01457 PF01965 DJ-1/PfpI family V060002_01459 PF13531 Bacterial extracellular solute-binding protein V060002_01464 PF11948 V060002_01464 V060002_01466 PF01555 DNA methylase V060002_01468 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system V060002_01469 PF05016 Plasmid stabilisation system protein V060002_01470 PF08212 Lipocalin-like domain V060002_01471 PF13673 Acetyltransferase (GNAT) domain V060002_01474 PF02016 LD-carboxypeptidase V060002_01475 PF01381 Helix-turn-helix V060002_01476 PF05015 Plasmid maintenance system killer protein V060002_01478 PF13420 Acetyltransferase (GNAT) domain V060002_01479 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system V060002_01480 PF05016 Plasmid stabilisation system protein V060002_01482 PF13508 Acetyltransferase (GNAT) domain V060002_01483 PF06042 Bacterial protein of unknown function (DUF925) V060002_01486 PF08847 V060002_01486 V060002_01486 PF14280 V060002_01486 V060002_01487 PF01527 Transposase V060002_01488 PF00665 Integrase core domain V060002_01492 PF04471 Restriction endonuclease V060002_01498 PF03693 Uncharacterised protein family (UPF0156) V060002_01499 PF05016 Plasmid stabilisation system protein V060002_01500 PF11948 V060002_01500 V060002_01502 PF04970 Lecithin retinol acyltransferase V060002_01503 PF07081 Protein of unknown function (DUF1349) V060002_01505 PF10985 V060002_01505 V060002_01507 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_01509 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_01510 PF02016 LD-carboxypeptidase V060002_01514 PF02566 OsmC-like protein V060002_01516 PF10985 V060002_01516 V060002_01517 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_01518 PF04221 RelB antitoxin V060002_01519 PF15738 V060002_01519 V060002_01521 PF08681 Protein of unknown function (DUF1778) V060002_01522 PF13673 Acetyltransferase (GNAT) domain V060002_01523 PF08212 Lipocalin-like domain V060002_01524 PF13302 Acetyltransferase (GNAT) domain V060002_01525 PF06945 V060002_01525 V060002_01526 PF00293 NUDIX domain V060002_01527 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system V060002_01528 PF05016 Plasmid stabilisation system protein V060002_01530 PF01844 HNH endonuclease V060002_01531 PF01966 HD domain V060002_01531 PF13286 Phosphohydrolase-associated domain V060002_01532 PF01844 HNH endonuclease V060002_01534 PF13561 Enoyl-(Acyl carrier protein) reductase V060002_01535 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_01537 PF10985 V060002_01537 V060002_01539 PF00589 Phage integrase family V060002_01539 PF13495 Phage integrase, N-terminal SAM-like domain V060002_01540 PF00453 Ribosomal protein L20 V060002_01541 PF01632 Ribosomal protein L35 V060002_01542 PF00707 Translation initiation factor IF-3, C-terminal domain V060002_01542 PF05198 Translation initiation factor IF-3, N-terminal domain V060002_01543 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V060002_01543 PF02824 TGS domain V060002_01543 PF03129 Anticodon binding domain V060002_01543 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V060002_01546 PF05488 PAAR motif V060002_01547 PF05887 V060002_01547 V060002_01548 PF01609 Transposase DDE domain V060002_01548 PF05598 V060002_01548 V060002_01549 PF00589 Phage integrase family V060002_01549 PF13356 Domain of unknown function (DUF4102) V060002_01550 PF01571 Aminomethyltransferase folate-binding domain V060002_01550 PF08669 Glycine cleavage T-protein C-terminal barrel domain V060002_01551 PF01381 Helix-turn-helix V060002_01551 PF07883 Cupin domain V060002_01552 PF00464 Serine hydroxymethyltransferase V060002_01553 PF01597 Glycine cleavage H-protein V060002_01554 PF02347 Glycine cleavage system P-protein V060002_01555 PF01797 Transposase IS200 like V060002_01556 PF00194 Eukaryotic-type carbonic anhydrase V060002_01559 PF00768 D-alanyl-D-alanine carboxypeptidase V060002_01559 PF07943 Penicillin-binding protein 5, C-terminal domain V060002_01560 PF00282 Pyridoxal-dependent decarboxylase conserved domain V060002_01561 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01561 PF00672 HAMP domain V060002_01561 PF02743 Cache domain V060002_01562 PF07690 Major Facilitator Superfamily V060002_01563 PF12833 Helix-turn-helix domain V060002_01565 PF13411 MerR HTH family regulatory protein V060002_01565 PF13649 Methyltransferase domain V060002_01566 PF13508 Acetyltransferase (GNAT) domain V060002_01569 PF07883 Cupin domain V060002_01570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01570 PF11884 Domain of unknown function (DUF3404) V060002_01571 PF00072 Response regulator receiver domain V060002_01571 PF00486 Transcriptional regulatory protein, C terminal V060002_01572 PF11060 V060002_01572 V060002_01573 PF11308 V060002_01573 V060002_01574 PF11308 V060002_01574 V060002_01575 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_01576 PF00128 Alpha amylase, catalytic domain V060002_01577 PF01292 Prokaryotic cytochrome b561 V060002_01578 PF13483 Beta-lactamase superfamily domain V060002_01579 PF00455 V060002_01579 V060002_01579 PF08220 DeoR-like helix-turn-helix domain V060002_01580 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V060002_01580 PF03611 V060002_01580 V060002_01581 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V060002_01582 PF00596 Class II Aldolase and Adducin N-terminal domain V060002_01583 PF08282 haloacid dehalogenase-like hydrolase V060002_01584 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family V060002_01585 PF01261 Xylose isomerase-like TIM barrel V060002_01587 PF00072 Response regulator receiver domain V060002_01587 PF00486 Transcriptional regulatory protein, C terminal V060002_01588 PF00512 His Kinase A (phospho-acceptor) domain V060002_01588 PF00672 HAMP domain V060002_01588 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01591 PF00871 Acetokinase family V060002_01592 PF09981 Uncharacterized protein conserved in bacteria (DUF2218) V060002_01593 PF00593 TonB dependent receptor V060002_01593 PF07715 TonB-dependent Receptor Plug Domain V060002_01594 PF12833 Helix-turn-helix domain V060002_01595 PF00005 ABC transporter V060002_01596 PF01032 FecCD transport family V060002_01597 PF01032 FecCD transport family V060002_01598 PF01497 Periplasmic binding protein V060002_01599 PF13230 Glutamine amidotransferases class-II V060002_01601 PF00801 PKD domain V060002_01601 PF05547 V060002_01601 V060002_01602 PF03280 Proteobacterial lipase chaperone protein V060002_01603 PF00561 alpha/beta hydrolase fold V060002_01604 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01604 PF12729 V060002_01604 V060002_01605 PF07968 Leukocidin/Hemolysin toxin family V060002_01605 PF12563 Hemolytic toxin N terminal V060002_01605 PF16458 V060002_01605 V060002_01606 PF00657 GDSL-like Lipase/Acylhydrolase V060002_01607 PF00990 GGDEF domain V060002_01608 PF07690 Major Facilitator Superfamily V060002_01609 PF03553 V060002_01609 V060002_01611 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01611 PF17149 V060002_01611 V060002_01612 PF00072 Response regulator receiver domain V060002_01612 PF11849 V060002_01612 V060002_01612 PF13487 HD domain V060002_01614 PF01467 Cytidylyltransferase V060002_01615 PF02540 NAD synthase V060002_01616 PF03605 V060002_01616 V060002_01617 PF00270 DEAD/DEAH box helicase V060002_01617 PF00271 Helicase conserved C-terminal domain V060002_01618 PF01797 Transposase IS200 like V060002_01620 PF12476 V060002_01620 V060002_01620 PF13304 AAA domain V060002_01621 PF03235 V060002_01621 V060002_01622 PF00145 C-5 cytosine-specific DNA methylase V060002_01623 PF00478 IMP dehydrogenase / GMP reductase domain V060002_01624 PF13505 Outer membrane protein beta-barrel domain V060002_01625 PF07885 Ion channel V060002_01626 PF03553 V060002_01626 V060002_01627 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V060002_01627 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V060002_01628 PF01256 Carbohydrate kinase V060002_01628 PF03853 YjeF-related protein N-terminus V060002_01629 PF00989 PAS fold V060002_01630 PF00072 Response regulator receiver domain V060002_01633 PF03889 V060002_01633 V060002_01634 PF00313 'Cold-shock' DNA-binding domain V060002_01635 PF00042 Globin V060002_01635 PF00175 Oxidoreductase NAD-binding domain V060002_01635 PF00970 Oxidoreductase FAD-binding domain V060002_01636 PF00158 Sigma-54 interaction domain V060002_01636 PF01590 GAF domain V060002_01637 PF00924 Mechanosensitive ion channel V060002_01638 PF01546 Peptidase family M20/M25/M40 V060002_01638 PF07687 Peptidase dimerisation domain V060002_01639 PF01773 Na+ dependent nucleoside transporter N-terminus V060002_01639 PF07662 Na+ dependent nucleoside transporter C-terminus V060002_01639 PF07670 Nucleoside recognition V060002_01640 PF01323 DSBA-like thioredoxin domain V060002_01642 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01642 PF00672 HAMP domain V060002_01643 PF07726 ATPase family associated with various cellular activities (AAA) V060002_01644 PF01882 V060002_01644 V060002_01645 PF14316 V060002_01645 V060002_01646 PF00092 von Willebrand factor type A domain V060002_01647 PF13519 von Willebrand factor type A domain V060002_01648 PF13584 V060002_01648 V060002_01649 PF04402 Protein of unknown function (DUF541) V060002_01650 PF00313 'Cold-shock' DNA-binding domain V060002_01651 PF00990 GGDEF domain V060002_01652 PF03734 L,D-transpeptidase catalytic domain V060002_01653 PF12843 V060002_01653 V060002_01655 PF01212 Beta-eliminating lyase V060002_01656 PF03222 Tryptophan/tyrosine permease family V060002_01657 PF00582 Universal stress protein family V060002_01659 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains V060002_01659 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus V060002_01659 PF04039 V060002_01659 V060002_01659 PF13244 V060002_01659 V060002_01660 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L V060002_01661 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains V060002_01662 PF01899 V060002_01662 V060002_01663 PF04066 V060002_01663 V060002_01664 PF03334 V060002_01664 V060002_01665 PF01794 V060002_01665 V060002_01665 PF08022 V060002_01665 V060002_01666 PF01327 Polypeptide deformylase V060002_01667 PF10462 Peptidase M66 V060002_01667 PF12561 V060002_01667 V060002_01668 PF01266 FAD dependent oxidoreductase V060002_01669 PF06808 V060002_01669 V060002_01670 PF16868 V060002_01670 V060002_01671 PF00072 Response regulator receiver domain V060002_01671 PF00158 Sigma-54 interaction domain V060002_01671 PF02954 Bacterial regulatory protein, Fis family V060002_01672 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01672 PF13426 PAS domain V060002_01673 PF02839 Carbohydrate binding domain V060002_01673 PF03067 Chitin binding domain V060002_01674 PF11777 V060002_01674 V060002_01675 PF07690 Major Facilitator Superfamily V060002_01676 PF03009 Glycerophosphoryl diester phosphodiesterase family V060002_01677 PF00027 Cyclic nucleotide-binding domain V060002_01678 PF01048 Phosphorylase superfamily V060002_01679 PF04973 V060002_01679 V060002_01680 PF00356 Bacterial regulatory proteins, lacI family V060002_01680 PF13377 Periplasmic binding protein-like domain V060002_01681 PF00294 pfkB family carbohydrate kinase V060002_01682 PF13407 Periplasmic binding protein domain V060002_01683 PF02653 V060002_01683 V060002_01684 PF00005 ABC transporter V060002_01685 PF05025 RbsD / FucU transport protein family V060002_01686 PF11216 V060002_01686 V060002_01688 PF01471 Putative peptidoglycan binding domain V060002_01688 PF05954 Phage late control gene D protein (GPD) V060002_01689 PF06812 V060002_01689 V060002_01690 PF06744 V060002_01690 V060002_01690 PF06761 V060002_01690 V060002_01690 PF14331 V060002_01690 V060002_01691 PF06812 V060002_01691 V060002_01691 PF16989 V060002_01691 V060002_01692 PF11319 V060002_01692 V060002_01693 PF00158 Sigma-54 interaction domain V060002_01693 PF02954 Bacterial regulatory protein, Fis family V060002_01694 PF00004 ATPase family associated with various cellular activities (AAA) V060002_01694 PF02861 Clp amino terminal domain V060002_01694 PF07724 AAA domain (Cdc48 subfamily) V060002_01694 PF10431 C-terminal, D2-small domain, of ClpB protein V060002_01695 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) V060002_01696 PF05936 V060002_01696 V060002_01697 PF12790 Type VI secretion lipoprotein V060002_01698 PF00498 FHA domain V060002_01699 PF06996 V060002_01699 V060002_01700 PF05947 V060002_01700 V060002_01701 PF04965 Gene 25-like lysozyme V060002_01702 PF05943 V060002_01702 V060002_01703 PF05591 V060002_01703 V060002_01705 PF05488 PAAR motif V060002_01706 PF00849 RNA pseudouridylate synthase V060002_01707 PF00916 V060002_01707 V060002_01707 PF01740 STAS domain V060002_01708 PF13419 Haloacid dehalogenase-like hydrolase V060002_01709 PF00563 EAL domain V060002_01710 PF00581 Rhodanese-like domain V060002_01711 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V060002_01711 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V060002_01712 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family V060002_01714 PF01483 Proprotein convertase P-domain V060002_01714 PF13582 Metallo-peptidase family M12B Reprolysin-like V060002_01716 PF01638 HxlR-like helix-turn-helix V060002_01718 PF02001 V060002_01718 V060002_01719 PF00892 EamA-like transporter family V060002_01720 PF00375 Sodium:dicarboxylate symporter family V060002_01723 PF07690 Major Facilitator Superfamily V060002_01724 PF00376 MerR family regulatory protein V060002_01724 PF09278 MerR, DNA binding V060002_01725 PF07690 Major Facilitator Superfamily V060002_01726 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01726 PF03466 LysR substrate binding domain V060002_01728 PF00563 EAL domain V060002_01728 PF00990 GGDEF domain V060002_01729 PF01551 Peptidase family M23 V060002_01729 PF04225 Opacity-associated protein A LysM-like domain V060002_01731 PF00916 V060002_01731 V060002_01731 PF01740 STAS domain V060002_01732 PF07670 Nucleoside recognition V060002_01733 PF00174 Oxidoreductase molybdopterin binding domain V060002_01734 PF00990 GGDEF domain V060002_01735 PF00005 ABC transporter V060002_01736 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01737 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01738 PF12849 PBP superfamily domain V060002_01739 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01739 PF00672 HAMP domain V060002_01740 PF07603 V060002_01740 V060002_01741 PF07603 V060002_01741 V060002_01742 PF01483 Proprotein convertase P-domain V060002_01743 PF00593 TonB dependent receptor V060002_01743 PF07715 TonB-dependent Receptor Plug Domain V060002_01744 PF00326 Prolyl oligopeptidase family V060002_01744 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V060002_01745 PF00270 DEAD/DEAH box helicase V060002_01745 PF00271 Helicase conserved C-terminal domain V060002_01746 PF04728 Lipoprotein leucine-zipper V060002_01747 PF01476 LysM domain V060002_01747 PF03734 L,D-transpeptidase catalytic domain V060002_01748 PF00875 DNA photolyase V060002_01748 PF03441 FAD binding domain of DNA photolyase V060002_01749 PF13411 MerR HTH family regulatory protein V060002_01750 PF04463 V060002_01750 V060002_01750 PF08349 V060002_01750 V060002_01751 PF01048 Phosphorylase superfamily V060002_01754 PF00990 GGDEF domain V060002_01755 PF11742 V060002_01755 V060002_01756 PF13533 Biotin-lipoyl like V060002_01757 PF03572 Peptidase family S41 V060002_01757 PF07676 WD40-like Beta Propeller Repeat V060002_01757 PF14684 Tricorn protease C1 domain V060002_01758 PF14542 GCN5-related N-acetyl-transferase V060002_01759 PF07238 PilZ domain V060002_01759 PF12945 Flagellar protein YcgR V060002_01760 PF03616 V060002_01760 V060002_01761 PF04018 V060002_01761 V060002_01763 PF02630 SCO1/SenC V060002_01764 PF04314 Protein of unknown function (DUF461) V060002_01765 PF00375 Sodium:dicarboxylate symporter family V060002_01766 PF01569 PAP2 superfamily V060002_01767 PF08668 HDOD domain V060002_01768 PF05787 Bacterial protein of unknown function (DUF839) V060002_01770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01771 PF00491 Arginase family V060002_01772 PF01614 Bacterial transcriptional regulator V060002_01772 PF09339 IclR helix-turn-helix domain V060002_01774 PF00704 Glycosyl hydrolases family 18 V060002_01774 PF02010 V060002_01774 V060002_01774 PF08329 Chitinase A, N-terminal domain V060002_01775 PF09829 V060002_01775 V060002_01776 PF00939 Sodium:sulfate symporter transmembrane region V060002_01777 PF03547 V060002_01777 V060002_01778 PF01757 V060002_01778 V060002_01779 PF01124 MAPEG family V060002_01782 PF13503 V060002_01782 V060002_01783 PF05954 Phage late control gene D protein (GPD) V060002_01784 PF05638 Protein of unknown function (DUF796) V060002_01785 PF00128 Alpha amylase, catalytic domain V060002_01785 PF02806 Alpha amylase, C-terminal all-beta domain V060002_01785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V060002_01786 PF02446 4-alpha-glucanotransferase V060002_01787 PF00343 Carbohydrate phosphorylase V060002_01788 PF00196 Bacterial regulatory proteins, luxR family V060002_01789 PF10928 Protein of unknown function (DUF2810) V060002_01790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01790 PF17200 V060002_01790 V060002_01791 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase V060002_01791 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase V060002_01792 PF01709 Transcriptional regulator V060002_01793 PF11686 V060002_01793 V060002_01796 PF11826 V060002_01796 V060002_01797 PF13614 AAA domain V060002_01798 PF02195 ParB-like nuclease domain V060002_01799 PF13416 Bacterial extracellular solute-binding protein V060002_01800 PF05127 Helicase V060002_01800 PF08351 Domain of unknown function (DUF1726) V060002_01800 PF13718 GNAT acetyltransferase 2 V060002_01801 PF12261 V060002_01801 V060002_01802 PF00501 AMP-binding enzyme V060002_01803 PF14518 Iron-containing redox enzyme V060002_01804 PF00106 short chain dehydrogenase V060002_01805 PF14559 Tetratricopeptide repeat V060002_01806 PF00072 Response regulator receiver domain V060002_01806 PF00486 Transcriptional regulatory protein, C terminal V060002_01807 PF00512 His Kinase A (phospho-acceptor) domain V060002_01807 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01807 PF08521 V060002_01807 V060002_01808 PF00884 Sulfatase V060002_01808 PF08019 V060002_01808 V060002_01809 PF00005 ABC transporter V060002_01810 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01811 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01812 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_01813 PF13466 STAS domain V060002_01814 PF00072 Response regulator receiver domain V060002_01815 PF01584 CheW-like domain V060002_01815 PF01627 Hpt domain V060002_01815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_01815 PF02895 Signal transducing histidine kinase, homodimeric domain V060002_01816 PF01584 CheW-like domain V060002_01817 PF01584 CheW-like domain V060002_01818 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01818 PF00672 HAMP domain V060002_01818 PF13188 PAS domain V060002_01818 PF13426 PAS domain V060002_01819 PF01739 CheR methyltransferase, SAM binding domain V060002_01819 PF03705 CheR methyltransferase, all-alpha domain V060002_01820 PF03975 CheD chemotactic sensory transduction V060002_01821 PF00072 Response regulator receiver domain V060002_01821 PF01339 CheB methylesterase V060002_01822 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01823 PF13466 STAS domain V060002_01824 PF00072 Response regulator receiver domain V060002_01824 PF07228 Stage II sporulation protein E (SpoIIE) V060002_01824 PF13581 Histidine kinase-like ATPase domain V060002_01825 PF03961 V060002_01825 V060002_01826 PF00005 ABC transporter V060002_01826 PF00664 ABC transporter transmembrane region V060002_01827 PF00563 EAL domain V060002_01827 PF00990 GGDEF domain V060002_01827 PF16448 V060002_01827 V060002_01828 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP V060002_01829 PF02321 Outer membrane efflux protein V060002_01829 PF13437 HlyD family secretion protein V060002_01829 PF13533 Biotin-lipoyl like V060002_01830 PF01243 Pyridoxamine 5'-phosphate oxidase V060002_01830 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region V060002_01831 PF00196 Bacterial regulatory proteins, luxR family V060002_01831 PF08448 PAS fold V060002_01832 PF03781 Sulfatase-modifying factor enzyme 1 V060002_01832 PF08308 V060002_01832 V060002_01833 PF08308 V060002_01833 V060002_01834 PF02311 AraC-like ligand binding domain V060002_01834 PF12833 Helix-turn-helix domain V060002_01835 PF00171 Aldehyde dehydrogenase family V060002_01835 PF01619 Proline dehydrogenase V060002_01835 PF14850 DNA-binding domain of Proline dehydrogenase V060002_01837 PF00474 Sodium:solute symporter family V060002_01839 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01839 PF00672 HAMP domain V060002_01839 PF02743 Cache domain V060002_01840 PF01037 AsnC family V060002_01840 PF13412 Winged helix-turn-helix DNA-binding V060002_01841 PF00171 Aldehyde dehydrogenase family V060002_01842 PF01276 Orn/Lys/Arg decarboxylase, major domain V060002_01842 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain V060002_01842 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain V060002_01843 PF13520 Amino acid permease V060002_01844 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V060002_01845 PF04013 Putative SAM-dependent RNA methyltransferase V060002_01846 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01846 PF03466 LysR substrate binding domain V060002_01847 PF00106 short chain dehydrogenase V060002_01848 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01848 PF00672 HAMP domain V060002_01849 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01849 PF03466 LysR substrate binding domain V060002_01850 PF13460 NADH(P)-binding V060002_01851 PF00581 Rhodanese-like domain V060002_01852 PF01925 V060002_01852 V060002_01853 PF03733 V060002_01853 V060002_01855 PF00753 Metallo-beta-lactamase superfamily V060002_01856 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V060002_01857 PF05068 Mannitol repressor V060002_01858 PF01232 Mannitol dehydrogenase Rossmann domain V060002_01858 PF08125 Mannitol dehydrogenase C-terminal domain V060002_01859 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V060002_01859 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V060002_01859 PF02378 Phosphotransferase system, EIIC V060002_01861 PF01551 Peptidase family M23 V060002_01862 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V060002_01862 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V060002_01862 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V060002_01862 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V060002_01863 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01864 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_01865 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01866 PF00005 ABC transporter V060002_01867 PF00793 DAHP synthetase I family V060002_01868 PF11730 V060002_01868 V060002_01869 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01869 PF12729 V060002_01869 V060002_01870 PF01547 Bacterial extracellular solute-binding protein V060002_01872 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01872 PF12729 V060002_01872 V060002_01873 PF11212 V060002_01873 V060002_01874 PF00128 Alpha amylase, catalytic domain V060002_01874 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V060002_01875 PF02264 LamB porin V060002_01876 PF07148 V060002_01876 V060002_01877 PF08238 Sel1 repeat V060002_01878 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase V060002_01879 PF11280 V060002_01879 V060002_01880 PF05013 N-formylglutamate amidohydrolase V060002_01880 PF08014 V060002_01880 V060002_01881 PF04219 V060002_01881 V060002_01882 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01882 PF03466 LysR substrate binding domain V060002_01883 PF07681 V060002_01883 V060002_01884 PF02805 Metal binding domain of Ada V060002_01884 PF06029 AlkA N-terminal domain V060002_01884 PF12833 Helix-turn-helix domain V060002_01885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V060002_01887 PF03600 Citrate transporter V060002_01888 PF07670 Nucleoside recognition V060002_01889 PF07670 Nucleoside recognition V060002_01890 PF00462 Glutaredoxin V060002_01891 PF00892 EamA-like transporter family V060002_01892 PF13609 Gram-negative porin V060002_01893 PF02566 OsmC-like protein V060002_01894 PF01047 MarR family V060002_01895 PF01557 Fumarylacetoacetate (FAA) hydrolase family V060002_01896 PF05437 V060002_01896 V060002_01897 PF03591 V060002_01897 V060002_01898 PF02311 AraC-like ligand binding domain V060002_01898 PF12833 Helix-turn-helix domain V060002_01899 PF01810 V060002_01899 V060002_01900 PF00440 Bacterial regulatory proteins, tetR family V060002_01900 PF16925 V060002_01900 V060002_01901 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V060002_01903 PF00005 ABC transporter V060002_01903 PF00664 ABC transporter transmembrane region V060002_01904 PF02274 Amidinotransferase V060002_01905 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V060002_01906 PF04399 Glutaredoxin 2, C terminal domain V060002_01906 PF13417 Glutathione S-transferase, N-terminal domain V060002_01907 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01907 PF03466 LysR substrate binding domain V060002_01908 PF00270 DEAD/DEAH box helicase V060002_01908 PF00271 Helicase conserved C-terminal domain V060002_01909 PF01554 MatE V060002_01910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01910 PF08447 PAS fold V060002_01911 PF00391 PEP-utilising enzyme, mobile domain V060002_01911 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain V060002_01911 PF02896 PEP-utilising enzyme, TIM barrel domain V060002_01912 PF03618 V060002_01912 V060002_01913 PF01565 FAD binding domain V060002_01913 PF02754 V060002_01913 V060002_01913 PF02913 FAD linked oxidases, C-terminal domain V060002_01913 PF13183 4Fe-4S dicluster domain V060002_01914 PF01070 FMN-dependent dehydrogenase V060002_01915 PF02652 V060002_01915 V060002_01916 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01916 PF03466 LysR substrate binding domain V060002_01917 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_01919 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01920 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_01921 PF00005 ABC transporter V060002_01921 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_01923 PF05362 Lon protease (S16) C-terminal proteolytic domain V060002_01923 PF13654 AAA domain V060002_01924 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01924 PF00672 HAMP domain V060002_01926 PF07690 Major Facilitator Superfamily V060002_01927 PF11012 V060002_01927 V060002_01928 PF06865 Protein of unknown function (DUF1255) V060002_01929 PF02678 Pirin V060002_01929 PF05726 Pirin C-terminal cupin domain V060002_01931 PF00990 GGDEF domain V060002_01932 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_01932 PF03466 LysR substrate binding domain V060002_01933 PF00892 EamA-like transporter family V060002_01934 PF12060 V060002_01934 V060002_01935 PF13532 2OG-Fe(II) oxygenase superfamily V060002_01936 PF00990 GGDEF domain V060002_01936 PF03924 CHASE domain V060002_01937 PF01381 Helix-turn-helix V060002_01937 PF12268 V060002_01937 V060002_01939 PF00990 GGDEF domain V060002_01940 PF12802 MarR family V060002_01941 PF00072 Response regulator receiver domain V060002_01941 PF01584 CheW-like domain V060002_01942 PF13616 PPIC-type PPIASE domain V060002_01943 PF00196 Bacterial regulatory proteins, luxR family V060002_01944 PF01906 Putative heavy-metal-binding V060002_01945 PF13640 2OG-Fe(II) oxygenase superfamily V060002_01946 PF07073 Modulator of Rho-dependent transcription termination (ROF) V060002_01947 PF13302 Acetyltransferase (GNAT) domain V060002_01948 PF00005 ABC transporter V060002_01948 PF08402 TOBE domain V060002_01949 PF13416 Bacterial extracellular solute-binding protein V060002_01950 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01950 PF14785 Maltose transport system permease protein MalF P2 domain V060002_01951 PF00528 Binding-protein-dependent transport system inner membrane component V060002_01953 PF03061 Thioesterase superfamily V060002_01954 PF00455 V060002_01954 V060002_01954 PF08220 DeoR-like helix-turn-helix domain V060002_01955 PF00990 GGDEF domain V060002_01955 PF08448 PAS fold V060002_01956 PF00892 EamA-like transporter family V060002_01957 PF12833 Helix-turn-helix domain V060002_01958 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family V060002_01960 PF00313 'Cold-shock' DNA-binding domain V060002_01962 PF13487 HD domain V060002_01963 PF05661 V060002_01963 V060002_01964 PF05958 tRNA (Uracil-5-)-methyltransferase V060002_01966 PF05656 V060002_01966 V060002_01967 PF12833 Helix-turn-helix domain V060002_01968 PF01979 Amidohydrolase family V060002_01969 PF00111 2Fe-2S iron-sulfur cluster binding domain V060002_01969 PF00175 Oxidoreductase NAD-binding domain V060002_01969 PF00970 Oxidoreductase FAD-binding domain V060002_01969 PF03473 MOSC domain V060002_01969 PF03476 MOSC N-terminal beta barrel domain V060002_01970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01970 PF00672 HAMP domain V060002_01970 PF02743 Cache domain V060002_01972 PF01553 Acyltransferase V060002_01974 PF04175 Protein of unknown function (DUF406) V060002_01975 PF00440 Bacterial regulatory proteins, tetR family V060002_01976 PF00005 ABC transporter V060002_01977 PF01032 FecCD transport family V060002_01978 PF01497 Periplasmic binding protein V060002_01979 PF02472 Biopolymer transport protein ExbD/TolR V060002_01980 PF01618 V060002_01980 V060002_01981 PF03544 Gram-negative bacterial TonB protein C-terminal V060002_01982 PF04055 Radical SAM superfamily V060002_01983 PF06228 Haem utilisation ChuX/HutX V060002_01984 PF01243 Pyridoxamine 5'-phosphate oxidase V060002_01985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_01986 PF05651 V060002_01986 V060002_01986 PF13556 PucR C-terminal helix-turn-helix domain V060002_01987 PF02447 V060002_01987 V060002_01988 PF02595 Glycerate kinase family V060002_01990 PF01323 DSBA-like thioredoxin domain V060002_01991 PF00753 Metallo-beta-lactamase superfamily V060002_01993 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain V060002_01993 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase V060002_01994 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase V060002_01995 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain V060002_01995 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain V060002_01996 PF02743 Cache domain V060002_01996 PF13487 HD domain V060002_01998 PF07361 Cytochrome b562 V060002_02000 PF03929 V060002_02000 V060002_02001 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_02002 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02002 PF03466 LysR substrate binding domain V060002_02003 PF00196 Bacterial regulatory proteins, luxR family V060002_02003 PF03472 Autoinducer binding domain V060002_02006 PF00155 Aminotransferase class I and II V060002_02007 PF00107 Zinc-binding dehydrogenase V060002_02007 PF08240 Alcohol dehydrogenase GroES-like domain V060002_02009 PF05791 Bacillus haemolytic enterotoxin (HBL) V060002_02013 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family V060002_02014 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02014 PF03466 LysR substrate binding domain V060002_02015 PF00291 Pyridoxal-phosphate dependent enzyme V060002_02017 PF08173 V060002_02017 V060002_02018 PF02322 V060002_02018 V060002_02019 PF01654 V060002_02019 V060002_02020 PF00155 Aminotransferase class I and II V060002_02020 PF00392 Bacterial regulatory proteins, gntR family V060002_02021 PF00768 D-alanyl-D-alanine carboxypeptidase V060002_02023 PF03922 OmpW family V060002_02024 PF01447 Thermolysin metallopeptidase, catalytic domain V060002_02024 PF02868 Thermolysin metallopeptidase, alpha-helical domain V060002_02024 PF03413 Peptidase propeptide and YPEB domain V060002_02024 PF04151 Bacterial pre-peptidase C-terminal domain V060002_02024 PF07504 Fungalysin/Thermolysin Propeptide Motif V060002_02025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02025 PF08447 PAS fold V060002_02026 PF12262 V060002_02026 V060002_02027 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) V060002_02028 PF00128 Alpha amylase, catalytic domain V060002_02029 PF00248 Aldo/keto reductase family V060002_02031 PF00005 ABC transporter V060002_02032 PF02687 V060002_02032 V060002_02032 PF12704 MacB-like periplasmic core domain V060002_02033 PF17131 V060002_02033 V060002_02035 PF06580 V060002_02035 V060002_02036 PF00072 Response regulator receiver domain V060002_02036 PF04397 LytTr DNA-binding domain V060002_02038 PF00990 GGDEF domain V060002_02039 PF13520 Amino acid permease V060002_02040 PF01810 V060002_02040 V060002_02042 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V060002_02042 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V060002_02043 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V060002_02044 PF02566 OsmC-like protein V060002_02045 PF01595 V060002_02045 V060002_02045 PF03471 Transporter associated domain V060002_02046 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_02046 PF12464 Maltose acetyltransferase V060002_02047 PF00892 EamA-like transporter family V060002_02048 PF01545 Cation efflux family V060002_02049 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02049 PF03466 LysR substrate binding domain V060002_02050 PF13489 Methyltransferase domain V060002_02052 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02052 PF03466 LysR substrate binding domain V060002_02053 PF00501 AMP-binding enzyme V060002_02053 PF13193 AMP-binding enzyme C-terminal domain V060002_02054 PF00351 Biopterin-dependent aromatic amino acid hydroxylase V060002_02055 PF01329 Pterin 4 alpha carbinolamine dehydratase V060002_02056 PF00583 Acetyltransferase (GNAT) family V060002_02057 PF00202 Aminotransferase class-III V060002_02058 PF06339 V060002_02058 V060002_02059 PF00696 Amino acid kinase family V060002_02061 PF00118 TCP-1/cpn60 chaperonin family V060002_02062 PF00166 Chaperonin 10 Kd subunit V060002_02063 PF01769 Divalent cation transporter V060002_02063 PF03448 MgtE intracellular N domain V060002_02064 PF00924 Mechanosensitive ion channel V060002_02065 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V060002_02066 PF00491 Arginase family V060002_02067 PF04151 Bacterial pre-peptidase C-terminal domain V060002_02067 PF04389 Peptidase family M28 V060002_02068 PF13365 Trypsin-like peptidase domain V060002_02069 PF03067 Chitin binding domain V060002_02070 PF04244 Deoxyribodipyrimidine photo-lyase-related protein V060002_02071 PF01575 MaoC like domain V060002_02072 PF12727 PBP superfamily domain V060002_02073 PF11225 V060002_02073 V060002_02074 PF00575 S1 RNA binding domain V060002_02074 PF00773 RNB domain V060002_02074 PF08206 Ribonuclease B OB domain V060002_02075 PF00270 DEAD/DEAH box helicase V060002_02075 PF00271 Helicase conserved C-terminal domain V060002_02075 PF03880 DbpA RNA binding domain V060002_02076 PF00089 Trypsin V060002_02077 PF00884 Sulfatase V060002_02078 PF00294 pfkB family carbohydrate kinase V060002_02079 PF05981 V060002_02079 V060002_02081 PF13419 Haloacid dehalogenase-like hydrolase V060002_02083 PF00239 Resolvase, N terminal domain V060002_02083 PF13384 Homeodomain-like domain V060002_02086 PF01527 Transposase V060002_02087 PF00665 Integrase core domain V060002_02090 PF04002 RadC-like JAB domain V060002_02091 PF05930 Prophage CP4-57 regulatory protein (AlpA) V060002_02092 PF09264 Vibrio cholerae sialidase, lectin insertion V060002_02092 PF13088 BNR repeat-like domain V060002_02093 PF01979 Amidohydrolase family V060002_02094 PF00480 ROK family V060002_02095 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase V060002_02096 PF03480 Bacterial extracellular solute-binding protein, family 7 V060002_02097 PF04290 V060002_02097 V060002_02098 PF06808 V060002_02098 V060002_02099 PF00701 Dihydrodipicolinate synthetase family V060002_02100 PF01380 SIS domain V060002_02100 PF01418 Helix-turn-helix domain, rpiR family V060002_02101 PF01344 Kelch motif V060002_02102 PF07646 Kelch motif V060002_02103 PF13280 V060002_02103 V060002_02106 PF02384 N-6 DNA Methylase V060002_02106 PF12161 HsdM N-terminal domain V060002_02107 PF01420 Type I restriction modification DNA specificity domain V060002_02108 PF03235 V060002_02108 V060002_02109 PF03235 V060002_02109 V060002_02109 PF07510 V060002_02109 V060002_02110 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) V060002_02110 PF04851 Type III restriction enzyme, res subunit V060002_02112 PF00691 OmpA family V060002_02113 PF15611 V060002_02113 V060002_02114 PF00176 SNF2 family N-terminal domain V060002_02114 PF00271 Helicase conserved C-terminal domain V060002_02114 PF04471 Restriction endonuclease V060002_02115 PF00589 Phage integrase family V060002_02116 PF00589 Phage integrase family V060002_02116 PF13356 Domain of unknown function (DUF4102) V060002_02118 PF00873 AcrB/AcrD/AcrF family V060002_02119 PF16576 V060002_02119 V060002_02120 PF03886 Protein of unknown function (DUF330) V060002_02121 PF02470 V060002_02121 V060002_02122 PF04403 V060002_02122 V060002_02123 PF00924 Mechanosensitive ion channel V060002_02124 PF13265 V060002_02124 V060002_02125 PF01103 Surface antigen V060002_02127 PF00440 Bacterial regulatory proteins, tetR family V060002_02127 PF14246 AefR-like transcriptional repressor, C-terminal region V060002_02128 PF00171 Aldehyde dehydrogenase family V060002_02129 PF07383 V060002_02129 V060002_02131 PF00440 Bacterial regulatory proteins, tetR family V060002_02132 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V060002_02132 PF02770 Acyl-CoA dehydrogenase, middle domain V060002_02132 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V060002_02132 PF09317 V060002_02132 V060002_02133 PF07055 Enoyl reductase FAD binding domain V060002_02133 PF12241 Trans-2-enoyl-CoA reductase catalytic region V060002_02133 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V060002_02134 PF01176 Translation initiation factor 1A / IF-1 V060002_02135 PF04376 V060002_02135 V060002_02135 PF04377 V060002_02135 V060002_02136 PF03588 Leucyl/phenylalanyl-tRNA protein transferase V060002_02137 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V060002_02138 PF10692 Protein of unknown function (DUF2498) V060002_02139 PF01131 DNA topoisomerase V060002_02139 PF01396 V060002_02139 V060002_02139 PF01751 Toprim domain V060002_02139 PF08272 Topoisomerase I zinc-ribbon-like V060002_02140 PF00483 Nucleotidyl transferase V060002_02141 PF00534 Glycosyl transferases group 1 V060002_02141 PF08323 Starch synthase catalytic domain V060002_02142 PF00561 alpha/beta hydrolase fold V060002_02144 PF09413 Domain of unknown function (DUF2007) V060002_02145 PF09335 V060002_02145 V060002_02146 PF04993 TfoX N-terminal domain V060002_02146 PF04994 TfoX C-terminal domain V060002_02147 PF00356 Bacterial regulatory proteins, lacI family V060002_02147 PF13377 Periplasmic binding protein-like domain V060002_02148 PF02613 Nitrate reductase delta subunit V060002_02149 PF00072 Response regulator receiver domain V060002_02149 PF00486 Transcriptional regulatory protein, C terminal V060002_02150 PF02698 DUF218 domain V060002_02151 PF08241 Methyltransferase domain V060002_02152 PF03882 KicB killing factor V060002_02152 PF17192 V060002_02152 V060002_02152 PF17193 V060002_02152 V060002_02153 PF04288 MukE-like family V060002_02154 PF04310 MukB N-terminal V060002_02154 PF13558 Putative exonuclease SbcCD, C subunit V060002_02154 PF16330 V060002_02154 V060002_02155 PF01037 AsnC family V060002_02155 PF13412 Winged helix-turn-helix DNA-binding V060002_02156 PF01810 V060002_02156 V060002_02157 PF04055 Radical SAM superfamily V060002_02157 PF08497 V060002_02157 V060002_02157 PF11842 V060002_02157 V060002_02158 PF00563 EAL domain V060002_02158 PF13426 PAS domain V060002_02159 PF00675 Insulinase (Peptidase family M16) V060002_02159 PF05193 Peptidase M16 inactive domain V060002_02161 PF14056 V060002_02161 V060002_02162 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02162 PF03466 LysR substrate binding domain V060002_02163 PF01717 Cobalamin-independent synthase, Catalytic domain V060002_02163 PF08267 Cobalamin-independent synthase, N-terminal domain V060002_02164 PF16549 V060002_02164 V060002_02165 PF03795 YCII-related domain V060002_02166 PF03061 Thioesterase superfamily V060002_02167 PF04279 V060002_02167 V060002_02169 PF02698 DUF218 domain V060002_02170 PF13460 NADH(P)-binding V060002_02171 PF06146 V060002_02171 V060002_02172 PF01226 Formate/nitrite transporter V060002_02173 PF06796 V060002_02173 V060002_02174 PF03264 NapC/NirT cytochrome c family, N-terminal region V060002_02175 PF00384 Molybdopterin oxidoreductase V060002_02175 PF01568 Molydopterin dinucleotide binding domain V060002_02176 PF02065 Melibiase V060002_02178 PF11449 V060002_02178 V060002_02179 PF01368 DHH family V060002_02179 PF02833 DHHA2 domain V060002_02180 PF11042 V060002_02180 V060002_02181 PF11150 V060002_02181 V060002_02182 PF00005 ABC transporter V060002_02183 PF00005 ABC transporter V060002_02183 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_02184 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02184 PF12911 V060002_02184 V060002_02185 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02186 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_02187 PF00158 Sigma-54 interaction domain V060002_02187 PF02954 Bacterial regulatory protein, Fis family V060002_02188 PF04012 V060002_02188 V060002_02189 PF06667 V060002_02189 V060002_02190 PF04024 V060002_02190 V060002_02191 PF16576 V060002_02191 V060002_02192 PF13437 HlyD family secretion protein V060002_02192 PF13533 Biotin-lipoyl like V060002_02193 PF00873 AcrB/AcrD/AcrF family V060002_02194 PF03352 Methyladenine glycosylase V060002_02195 PF01053 Cys/Met metabolism PLP-dependent enzyme V060002_02196 PF13091 PLD-like domain V060002_02196 PF13396 V060002_02196 V060002_02197 PF00209 Sodium:neurotransmitter symporter family V060002_02198 PF00849 RNA pseudouridylate synthase V060002_02199 PF01066 CDP-alcohol phosphatidyltransferase V060002_02200 PF00005 ABC transporter V060002_02201 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02202 PF13416 Bacterial extracellular solute-binding protein V060002_02203 PF03724 META domain V060002_02204 PF06945 V060002_02204 V060002_02206 PF12698 ABC-2 family transporter protein V060002_02207 PF00005 ABC transporter V060002_02208 PF13437 HlyD family secretion protein V060002_02209 PF03222 Tryptophan/tyrosine permease family V060002_02211 PF00892 EamA-like transporter family V060002_02212 PF00571 CBS domain V060002_02212 PF01769 Divalent cation transporter V060002_02213 PF00072 Response regulator receiver domain V060002_02213 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_02213 PF00512 His Kinase A (phospho-acceptor) domain V060002_02213 PF01627 Hpt domain V060002_02213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02214 PF00072 Response regulator receiver domain V060002_02214 PF00196 Bacterial regulatory proteins, luxR family V060002_02214 PF00563 EAL domain V060002_02215 PF00072 Response regulator receiver domain V060002_02216 PF01752 Collagenase V060002_02216 PF04151 Bacterial pre-peptidase C-terminal domain V060002_02216 PF08453 Peptidase family M9 N-terminal V060002_02217 PF00089 Trypsin V060002_02218 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_02218 PF12793 V060002_02218 V060002_02220 PF13419 Haloacid dehalogenase-like hydrolase V060002_02221 PF11301 V060002_02221 V060002_02222 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02222 PF12729 V060002_02222 V060002_02223 PF12614 V060002_02223 V060002_02224 PF00563 EAL domain V060002_02225 PF01386 Ribosomal L25p family V060002_02226 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02227 PF00072 Response regulator receiver domain V060002_02227 PF00486 Transcriptional regulatory protein, C terminal V060002_02229 PF00271 Helicase conserved C-terminal domain V060002_02229 PF04851 Type III restriction enzyme, res subunit V060002_02230 PF00849 RNA pseudouridylate synthase V060002_02230 PF01479 S4 domain V060002_02231 PF07690 Major Facilitator Superfamily V060002_02232 PF11140 V060002_02232 V060002_02233 PF11066 V060002_02233 V060002_02233 PF13460 NADH(P)-binding V060002_02234 PF01554 MatE V060002_02235 PF00005 ABC transporter V060002_02236 PF02687 V060002_02236 V060002_02237 PF07143 Hydroxyneurosporene synthase (CrtC) V060002_02237 PF17186 V060002_02237 V060002_02238 PF06965 Na+/H+ antiporter 1 V060002_02239 PF00202 Aminotransferase class-III V060002_02239 PF00282 Pyridoxal-dependent decarboxylase conserved domain V060002_02240 PF03435 Saccharopine dehydrogenase V060002_02240 PF16653 V060002_02240 V060002_02242 PF00691 OmpA family V060002_02243 PF02321 Outer membrane efflux protein V060002_02244 PF00028 Cadherin domain V060002_02244 PF00353 Hemolysin-type calcium-binding repeat (2 copies) V060002_02244 PF03160 Calx-beta domain V060002_02245 PF07209 V060002_02245 V060002_02246 PF07690 Major Facilitator Superfamily V060002_02247 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02247 PF03466 LysR substrate binding domain V060002_02248 PF00462 Glutaredoxin V060002_02249 PF01863 Protein of unknown function DUF45 V060002_02250 PF05971 Protein of unknown function (DUF890) V060002_02252 PF13424 Tetratricopeptide repeat V060002_02253 PF04204 Homoserine O-succinyltransferase V060002_02254 PF13671 AAA domain V060002_02255 PF12698 ABC-2 family transporter protein V060002_02256 PF12698 ABC-2 family transporter protein V060002_02257 PF13437 HlyD family secretion protein V060002_02257 PF13533 Biotin-lipoyl like V060002_02258 PF02321 Outer membrane efflux protein V060002_02260 PF00989 PAS fold V060002_02260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02260 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain V060002_02260 PF17203 V060002_02260 V060002_02261 PF00072 Response regulator receiver domain V060002_02261 PF12431 V060002_02261 V060002_02262 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_02263 PF00072 Response regulator receiver domain V060002_02263 PF01584 CheW-like domain V060002_02265 PF10881 V060002_02265 V060002_02266 PF00990 GGDEF domain V060002_02269 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_02270 PF07690 Major Facilitator Superfamily V060002_02271 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain V060002_02271 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain V060002_02272 PF00288 GHMP kinases N terminal domain V060002_02272 PF08544 GHMP kinases C terminal V060002_02272 PF10509 Galactokinase galactose-binding signature V060002_02273 PF01263 Aldose 1-epimerase V060002_02274 PF00990 GGDEF domain V060002_02275 PF00563 EAL domain V060002_02276 PF13561 Enoyl-(Acyl carrier protein) reductase V060002_02277 PF00205 Thiamine pyrophosphate enzyme, central domain V060002_02277 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V060002_02277 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V060002_02278 PF03306 Alpha-acetolactate decarboxylase V060002_02279 PF03306 Alpha-acetolactate decarboxylase V060002_02280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02280 PF03466 LysR substrate binding domain V060002_02281 PF04224 V060002_02281 V060002_02282 PF00199 Catalase V060002_02282 PF06628 Catalase-related immune-responsive V060002_02283 PF12796 Ankyrin repeats (3 copies) V060002_02284 PF00080 Copper/zinc superoxide dismutase (SODC) V060002_02285 PF10070 V060002_02285 V060002_02286 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains V060002_02287 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02287 PF03466 LysR substrate binding domain V060002_02288 PF00501 AMP-binding enzyme V060002_02290 PF03279 V060002_02290 V060002_02291 PF04266 ASCH domain V060002_02292 PF09900 V060002_02292 V060002_02293 PF04342 V060002_02293 V060002_02294 PF00206 Lyase V060002_02294 PF10415 Fumarase C C-terminus V060002_02296 PF01654 V060002_02296 V060002_02297 PF02322 V060002_02297 V060002_02298 PF00005 ABC transporter V060002_02299 PF02687 V060002_02299 V060002_02299 PF12704 MacB-like periplasmic core domain V060002_02300 PF02687 V060002_02300 V060002_02300 PF12704 MacB-like periplasmic core domain V060002_02301 PF02321 Outer membrane efflux protein V060002_02302 PF16576 V060002_02302 V060002_02303 PF00753 Metallo-beta-lactamase superfamily V060002_02304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02304 PF03466 LysR substrate binding domain V060002_02305 PF00141 Peroxidase V060002_02306 PF00232 Glycosyl hydrolase family 1 V060002_02307 PF00356 Bacterial regulatory proteins, lacI family V060002_02307 PF13377 Periplasmic binding protein-like domain V060002_02308 PF01042 Endoribonuclease L-PSP V060002_02309 PF04074 Domain of unknown function (DUF386) V060002_02310 PF03009 Glycerophosphoryl diester phosphodiesterase family V060002_02311 PF00455 V060002_02311 V060002_02311 PF08220 DeoR-like helix-turn-helix domain V060002_02312 PF00005 ABC transporter V060002_02313 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02314 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02315 PF13416 Bacterial extracellular solute-binding protein V060002_02316 PF11932 V060002_02316 V060002_02317 PF01618 V060002_02317 V060002_02318 PF01618 V060002_02318 V060002_02319 PF02472 Biopolymer transport protein ExbD/TolR V060002_02320 PF03544 Gram-negative bacterial TonB protein C-terminal V060002_02322 PF01068 ATP dependent DNA ligase domain V060002_02322 PF14743 DNA ligase OB-like domain V060002_02323 PF11279 V060002_02323 V060002_02324 PF01554 MatE V060002_02325 PF14255 V060002_02325 V060002_02326 PF03881 Fructosamine kinase V060002_02327 PF12290 V060002_02327 V060002_02328 PF00877 NlpC/P60 family V060002_02329 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02330 PF04116 V060002_02330 V060002_02331 PF03942 V060002_02331 V060002_02332 PF00480 ROK family V060002_02333 PF11173 V060002_02333 V060002_02335 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_02336 PF00994 Probable molybdopterin binding domain V060002_02336 PF03205 Molybdopterin guanine dinucleotide synthesis protein B V060002_02336 PF03453 MoeA N-terminal region (domain I and II) V060002_02336 PF03454 MoeA C-terminal region (domain IV) V060002_02337 PF12804 MobA-like NTP transferase domain V060002_02338 PF00005 ABC transporter V060002_02339 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02340 PF12849 PBP superfamily domain V060002_02341 PF00072 Response regulator receiver domain V060002_02341 PF00158 Sigma-54 interaction domain V060002_02341 PF02954 Bacterial regulatory protein, Fis family V060002_02342 PF00512 His Kinase A (phospho-acceptor) domain V060002_02342 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02342 PF17202 V060002_02342 V060002_02343 PF00005 ABC transporter V060002_02343 PF12848 ABC transporter V060002_02344 PF02634 FdhD/NarQ family V060002_02345 PF11749 V060002_02345 V060002_02346 PF11748 V060002_02346 V060002_02347 PF00037 4Fe-4S binding domain V060002_02347 PF12837 4Fe-4S binding domain V060002_02347 PF12838 4Fe-4S dicluster domain V060002_02348 PF02613 Nitrate reductase delta subunit V060002_02349 PF10518 TAT (twin-arginine translocation) pathway signal sequence V060002_02350 PF00384 Molybdopterin oxidoreductase V060002_02350 PF01568 Molydopterin dinucleotide binding domain V060002_02350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V060002_02351 PF13247 4Fe-4S dicluster domain V060002_02352 PF01292 Prokaryotic cytochrome b561 V060002_02354 PF02146 Sir2 family V060002_02355 PF04461 Protein of unknown function (DUF520) V060002_02356 PF00793 DAHP synthetase I family V060002_02357 PF14539 Domain of unknown function (DUF4442) V060002_02359 PF13509 S1 domain V060002_02360 PF01189 NOL1/NOP2/sun family V060002_02360 PF13636 pre-rRNA processing and ribosome biogenesis V060002_02360 PF17125 V060002_02360 V060002_02361 PF02470 V060002_02361 V060002_02362 PF04403 V060002_02362 V060002_02363 PF00005 ABC transporter V060002_02363 PF00664 ABC transporter transmembrane region V060002_02364 PF13185 GAF domain V060002_02365 PF04352 ProQ/FINO family V060002_02365 PF17516 V060002_02365 V060002_02366 PF00595 PDZ domain (Also known as DHR or GLGF) V060002_02366 PF03572 Peptidase family S41 V060002_02366 PF08180 V060002_02366 V060002_02366 PF11818 V060002_02366 V060002_02368 PF01433 Peptidase family M1 V060002_02368 PF11940 Domain of unknown function (DUF3458) V060002_02368 PF17432 V060002_02368 V060002_02369 PF05088 V060002_02369 V060002_02370 PF01180 Dihydroorotate dehydrogenase V060002_02371 PF07126 V060002_02371 V060002_02373 PF01170 Putative RNA methylase family UPF0020 V060002_02373 PF02926 THUMP domain V060002_02373 PF10672 S-adenosylmethionine-dependent methyltransferase V060002_02374 PF05768 Glutaredoxin-like domain (DUF836) V060002_02375 PF00005 ABC transporter V060002_02375 PF12848 ABC transporter V060002_02375 PF16326 V060002_02375 V060002_02376 PF11949 V060002_02376 V060002_02377 PF04957 Ribosome modulation factor V060002_02378 PF07977 FabA-like domain V060002_02379 PF05362 Lon protease (S16) C-terminal proteolytic domain V060002_02379 PF13654 AAA domain V060002_02380 PF06303 Organiser of macrodomain of Terminus of chromosome V060002_02380 PF17414 V060002_02380 V060002_02381 PF12321 V060002_02381 V060002_02383 PF07634 V060002_02383 V060002_02383 PF11647 C-terminal region of Pasteurella multocida toxin residues 569-1285 V060002_02383 PF11713 Peptidase C80 family V060002_02383 PF12146 Putative lysophospholipase V060002_02383 PF16671 V060002_02383 V060002_02384 PF02794 V060002_02384 V060002_02386 PF00005 ABC transporter V060002_02386 PF00664 ABC transporter transmembrane region V060002_02386 PF03412 Peptidase C39 family V060002_02387 PF13437 HlyD family secretion protein V060002_02388 PF00005 ABC transporter V060002_02388 PF00664 ABC transporter transmembrane region V060002_02388 PF03412 Peptidase C39 family V060002_02389 PF00072 Response regulator receiver domain V060002_02389 PF00512 His Kinase A (phospho-acceptor) domain V060002_02389 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02390 PF08495 V060002_02390 V060002_02390 PF10442 V060002_02390 V060002_02392 PF00115 Cytochrome C and Quinol oxidase polypeptide I V060002_02393 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO V060002_02394 PF05545 V060002_02394 V060002_02395 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V060002_02395 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP V060002_02396 PF05751 V060002_02396 V060002_02397 PF00122 E1-E2 ATPase V060002_02397 PF00403 Heavy-metal-associated domain V060002_02397 PF00702 haloacid dehalogenase-like hydrolase V060002_02397 PF12156 V060002_02397 V060002_02398 PF03597 V060002_02398 V060002_02399 PF13386 V060002_02399 V060002_02400 PF00027 Cyclic nucleotide-binding domain V060002_02400 PF13545 Crp-like helix-turn-helix domain V060002_02401 PF00582 Universal stress protein family V060002_02402 PF01171 PP-loop family V060002_02403 PF11205 V060002_02403 V060002_02404 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase V060002_02406 PF00005 ABC transporter V060002_02406 PF08402 TOBE domain V060002_02407 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02408 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02409 PF13416 Bacterial extracellular solute-binding protein V060002_02410 PF13416 Bacterial extracellular solute-binding protein V060002_02413 PF01235 V060002_02413 V060002_02414 PF01810 V060002_02414 V060002_02415 PF11153 V060002_02415 V060002_02417 PF01764 Lipase (class 3) V060002_02418 PF13503 V060002_02418 V060002_02419 PF05954 Phage late control gene D protein (GPD) V060002_02419 PF16671 V060002_02419 V060002_02420 PF05638 Protein of unknown function (DUF796) V060002_02421 PF02074 Carboxypeptidase Taq (M32) metallopeptidase V060002_02422 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02422 PF00672 HAMP domain V060002_02423 PF07690 Major Facilitator Superfamily V060002_02424 PF13437 HlyD family secretion protein V060002_02424 PF13533 Biotin-lipoyl like V060002_02425 PF02321 Outer membrane efflux protein V060002_02426 PF00440 Bacterial regulatory proteins, tetR family V060002_02426 PF14246 AefR-like transcriptional repressor, C-terminal region V060002_02427 PF00270 DEAD/DEAH box helicase V060002_02427 PF00271 Helicase conserved C-terminal domain V060002_02428 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02428 PF08447 PAS fold V060002_02428 PF13426 PAS domain V060002_02429 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02429 PF00672 HAMP domain V060002_02430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02431 PF01584 CheW-like domain V060002_02432 PF00072 Response regulator receiver domain V060002_02432 PF01339 CheB methylesterase V060002_02434 PF01739 CheR methyltransferase, SAM binding domain V060002_02434 PF03705 CheR methyltransferase, all-alpha domain V060002_02435 PF00072 Response regulator receiver domain V060002_02436 PF01584 CheW-like domain V060002_02436 PF01627 Hpt domain V060002_02436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02436 PF02895 Signal transducing histidine kinase, homodimeric domain V060002_02438 PF00072 Response regulator receiver domain V060002_02439 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02440 PF00893 Small Multidrug Resistance protein V060002_02441 PF00875 DNA photolyase V060002_02441 PF03441 FAD binding domain of DNA photolyase V060002_02442 PF07690 Major Facilitator Superfamily V060002_02443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02443 PF03466 LysR substrate binding domain V060002_02444 PF03099 Biotin/lipoate A/B protein ligase family V060002_02444 PF10437 Bacterial lipoate protein ligase C-terminus V060002_02445 PF00012 Hsp70 protein V060002_02446 PF13505 Outer membrane protein beta-barrel domain V060002_02447 PF00270 DEAD/DEAH box helicase V060002_02447 PF00271 Helicase conserved C-terminal domain V060002_02447 PF04408 Helicase associated domain (HA2) V060002_02447 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold V060002_02447 PF11898 V060002_02447 V060002_02449 PF05099 Tellurite resistance protein TerB V060002_02451 PF00929 Exonuclease V060002_02452 PF00990 GGDEF domain V060002_02452 PF03924 CHASE domain V060002_02453 PF10816 V060002_02453 V060002_02454 PF00012 Hsp70 protein V060002_02455 PF00012 Hsp70 protein V060002_02455 PF12531 V060002_02455 V060002_02456 PF00990 GGDEF domain V060002_02458 PF00990 GGDEF domain V060002_02459 PF09084 NMT1/THI5 like V060002_02461 PF00990 GGDEF domain V060002_02461 PF13181 Tetratricopeptide repeat V060002_02461 PF13424 Tetratricopeptide repeat V060002_02462 PF06508 Queuosine biosynthesis protein QueC V060002_02463 PF04055 Radical SAM superfamily V060002_02463 PF13394 4Fe-4S single cluster domain V060002_02465 PF08282 haloacid dehalogenase-like hydrolase V060002_02466 PF10414 Sirohaem synthase dimerisation region V060002_02466 PF13241 Putative NAD(P)-binding V060002_02467 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_02468 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02469 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02470 PF00005 ABC transporter V060002_02471 PF01027 Inhibitor of apoptosis-promoting Bax1 V060002_02472 PF04358 DsrC like protein V060002_02473 PF00708 Acylphosphatase V060002_02474 PF10672 S-adenosylmethionine-dependent methyltransferase V060002_02475 PF00990 GGDEF domain V060002_02475 PF07494 Two component regulator propeller V060002_02475 PF07495 Y_Y_Y domain V060002_02476 PF08534 Redoxin V060002_02477 PF00072 Response regulator receiver domain V060002_02477 PF00512 His Kinase A (phospho-acceptor) domain V060002_02477 PF01627 Hpt domain V060002_02477 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02477 PF08448 PAS fold V060002_02478 PF00072 Response regulator receiver domain V060002_02478 PF13487 HD domain V060002_02479 PF02798 Glutathione S-transferase, N-terminal domain V060002_02479 PF14497 Glutathione S-transferase, C-terminal domain V060002_02480 PF01557 Fumarylacetoacetate (FAA) hydrolase family V060002_02481 PF04209 homogentisate 1,2-dioxygenase V060002_02482 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_02482 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal V060002_02483 PF01546 Peptidase family M20/M25/M40 V060002_02483 PF07687 Peptidase dimerisation domain V060002_02484 PF00293 NUDIX domain V060002_02485 PF00583 Acetyltransferase (GNAT) family V060002_02486 PF00501 AMP-binding enzyme V060002_02486 PF13193 AMP-binding enzyme C-terminal domain V060002_02486 PF16177 V060002_02486 V060002_02487 PF04303 PrpF protein V060002_02488 PF00330 Aconitase family (aconitate hydratase) V060002_02488 PF00694 Aconitase C-terminal domain V060002_02489 PF00285 Citrate synthase V060002_02490 PF13714 Phosphoenolpyruvate phosphomutase V060002_02491 PF00392 Bacterial regulatory proteins, gntR family V060002_02491 PF07729 FCD domain V060002_02492 PF03401 Tripartite tricarboxylate transporter family receptor V060002_02493 PF07331 V060002_02493 V060002_02494 PF01970 V060002_02494 V060002_02495 PF07313 Protein of unknown function (DUF1460) V060002_02496 PF13505 Outer membrane protein beta-barrel domain V060002_02497 PF02653 V060002_02497 V060002_02498 PF00005 ABC transporter V060002_02499 PF13407 Periplasmic binding protein domain V060002_02500 PF02579 Dinitrogenase iron-molybdenum cofactor V060002_02501 PF04400 V060002_02501 V060002_02502 PF00912 Transglycosylase V060002_02503 PF00072 Response regulator receiver domain V060002_02503 PF00486 Transcriptional regulatory protein, C terminal V060002_02504 PF00512 His Kinase A (phospho-acceptor) domain V060002_02504 PF00672 HAMP domain V060002_02504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02505 PF06629 V060002_02505 V060002_02506 PF04393 V060002_02506 V060002_02507 PF00072 Response regulator receiver domain V060002_02508 PF00027 Cyclic nucleotide-binding domain V060002_02508 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02509 PF00939 Sodium:sulfate symporter transmembrane region V060002_02510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02510 PF12729 V060002_02510 V060002_02511 PF00842 Alanine racemase, C-terminal domain V060002_02511 PF01168 Alanine racemase, N-terminal domain V060002_02512 PF00892 EamA-like transporter family V060002_02513 PF11163 V060002_02513 V060002_02514 PF13302 Acetyltransferase (GNAT) domain V060002_02515 PF00158 Sigma-54 interaction domain V060002_02515 PF00989 PAS fold V060002_02516 PF05128 V060002_02516 V060002_02517 PF04317 V060002_02517 V060002_02519 PF05681 V060002_02519 V060002_02519 PF05683 Fumarase C-terminus V060002_02520 PF00425 chorismate binding enzyme V060002_02520 PF04715 Anthranilate synthase component I, N terminal region V060002_02521 PF00293 NUDIX domain V060002_02522 PF01490 V060002_02522 V060002_02523 PF03313 V060002_02523 V060002_02523 PF03315 Serine dehydratase beta chain V060002_02524 PF01242 6-pyruvoyl tetrahydropterin synthase V060002_02525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02526 PF00152 tRNA synthetases class II (D, K and N) V060002_02526 PF01336 OB-fold nucleic acid binding domain V060002_02527 PF08543 Phosphomethylpyrimidine kinase V060002_02528 PF01966 HD domain V060002_02529 PF00155 Aminotransferase class I and II V060002_02530 PF00027 Cyclic nucleotide-binding domain V060002_02530 PF00571 CBS domain V060002_02530 PF03445 V060002_02530 V060002_02530 PF10335 V060002_02530 V060002_02531 PF00929 Exonuclease V060002_02533 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02533 PF00672 HAMP domain V060002_02533 PF02743 Cache domain V060002_02534 PF04349 Periplasmic glucan biosynthesis protein, MdoG V060002_02535 PF13632 Glycosyl transferase family group 2 V060002_02536 PF00356 Bacterial regulatory proteins, lacI family V060002_02536 PF13377 Periplasmic binding protein-like domain V060002_02537 PF04794 YdjC-like protein V060002_02538 PF02056 Family 4 glycosyl hydrolase V060002_02538 PF11975 Family 4 glycosyl hydrolase C-terminal domain V060002_02539 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit V060002_02540 PF02378 Phosphotransferase system, EIIC V060002_02541 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V060002_02542 PF01522 Polysaccharide deacetylase V060002_02543 PF02028 BCCT family transporter V060002_02544 PF01047 MarR family V060002_02545 PF00072 Response regulator receiver domain V060002_02545 PF00196 Bacterial regulatory proteins, luxR family V060002_02546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02546 PF07730 Histidine kinase V060002_02546 PF17200 V060002_02546 V060002_02547 PF06808 V060002_02547 V060002_02548 PF04290 V060002_02548 V060002_02549 PF03480 Bacterial extracellular solute-binding protein, family 7 V060002_02551 PF11201 V060002_02551 V060002_02552 PF00753 Metallo-beta-lactamase superfamily V060002_02553 PF05951 V060002_02553 V060002_02554 PF01471 Putative peptidoglycan binding domain V060002_02554 PF03734 L,D-transpeptidase catalytic domain V060002_02555 PF07433 V060002_02555 V060002_02556 PF09375 Imelysin V060002_02557 PF06537 V060002_02557 V060002_02558 PF09375 Imelysin V060002_02559 PF00925 GTP cyclohydrolase II V060002_02561 PF07690 Major Facilitator Superfamily V060002_02562 PF12833 Helix-turn-helix domain V060002_02563 PF00581 Rhodanese-like domain V060002_02564 PF00521 DNA gyrase/topoisomerase IV, subunit A V060002_02564 PF03989 DNA gyrase C-terminal domain, beta-propeller V060002_02565 PF13489 Methyltransferase domain V060002_02566 PF00317 Ribonucleotide reductase, all-alpha domain V060002_02566 PF02867 Ribonucleotide reductase, barrel domain V060002_02566 PF03477 ATP cone domain V060002_02567 PF00268 Ribonucleotide reductase, small chain V060002_02568 PF00111 2Fe-2S iron-sulfur cluster binding domain V060002_02570 PF00994 Probable molybdopterin binding domain V060002_02571 PF13084 V060002_02571 V060002_02572 PF13740 ACT domain V060002_02573 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02573 PF00672 HAMP domain V060002_02573 PF17200 V060002_02573 V060002_02574 PF11042 V060002_02574 V060002_02575 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase V060002_02576 PF00005 ABC transporter V060002_02577 PF01032 FecCD transport family V060002_02578 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family V060002_02579 PF00300 Histidine phosphatase superfamily (branch 1) V060002_02580 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase V060002_02581 PF02654 V060002_02581 V060002_02582 PF02277 Phosphoribosyltransferase V060002_02583 PF01641 SelR domain V060002_02584 PF00375 Sodium:dicarboxylate symporter family V060002_02585 PF00929 Exonuclease V060002_02585 PF08411 Exonuclease C-terminal V060002_02586 PF03788 V060002_02586 V060002_02587 PF04172 V060002_02587 V060002_02588 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V060002_02588 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region V060002_02589 PF03547 V060002_02589 V060002_02590 PF02222 ATP-grasp domain V060002_02591 PF05724 Thiopurine S-methyltransferase (TPMT) V060002_02593 PF04607 Region found in RelA / SpoT proteins V060002_02594 PF00216 Bacterial DNA-binding protein V060002_02595 PF01588 Putative tRNA binding domain V060002_02595 PF03147 Ferredoxin-fold anticodon binding domain V060002_02595 PF03483 B3/4 domain V060002_02595 PF03484 tRNA synthetase B5 domain V060002_02596 PF01409 tRNA synthetases class II core domain (F) V060002_02596 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain V060002_02597 PF00583 Acetyltransferase (GNAT) family V060002_02598 PF00990 GGDEF domain V060002_02598 PF01814 Hemerythrin HHE cation binding domain V060002_02603 PF01066 CDP-alcohol phosphatidyltransferase V060002_02604 PF01541 GIY-YIG catalytic domain V060002_02604 PF02151 UvrB/uvrC motif V060002_02604 PF08459 UvrC Helix-hairpin-helix N-terminal V060002_02604 PF14520 Helix-hairpin-helix domain V060002_02605 PF00072 Response regulator receiver domain V060002_02605 PF00196 Bacterial regulatory proteins, luxR family V060002_02606 PF00136 DNA polymerase family B V060002_02606 PF03104 DNA polymerase family B, exonuclease domain V060002_02607 PF00563 EAL domain V060002_02607 PF02378 Phosphotransferase system, EIIC V060002_02608 PF01909 Nucleotidyltransferase domain V060002_02609 PF01132 Elongation factor P (EF-P) OB domain V060002_02609 PF08207 Elongation factor P (EF-P) KOW-like domain V060002_02609 PF09285 Elongation factor P, C-terminal V060002_02610 PF04269 Protein of unknown function, DUF440 V060002_02611 PF11383 V060002_02611 V060002_02612 PF00392 Bacterial regulatory proteins, gntR family V060002_02612 PF07702 UTRA domain V060002_02613 PF01979 Amidohydrolase family V060002_02614 PF00491 Arginase family V060002_02615 PF01175 Urocanase V060002_02615 PF17391 V060002_02615 V060002_02615 PF17392 V060002_02615 V060002_02616 PF00221 Aromatic amino acid lyase V060002_02617 PF12119 V060002_02617 V060002_02618 PF00089 Trypsin V060002_02619 PF04191 Phospholipid methyltransferase V060002_02620 PF01565 FAD binding domain V060002_02620 PF02913 FAD linked oxidases, C-terminal domain V060002_02620 PF13183 4Fe-4S dicluster domain V060002_02621 PF11813 V060002_02621 V060002_02622 PF10979 V060002_02622 V060002_02623 PF00691 OmpA family V060002_02623 PF13488 V060002_02623 V060002_02624 PF08238 Sel1 repeat V060002_02627 PF01259 SAICAR synthetase V060002_02629 PF00390 Malic enzyme, N-terminal domain V060002_02629 PF03949 Malic enzyme, NAD binding domain V060002_02630 PF11872 V060002_02630 V060002_02631 PF02698 DUF218 domain V060002_02632 PF00990 GGDEF domain V060002_02633 PF00266 Aminotransferase class-V V060002_02634 PF10014 2OG-Fe dioxygenase V060002_02635 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_02636 PF00005 ABC transporter V060002_02636 PF00664 ABC transporter transmembrane region V060002_02637 PF00005 ABC transporter V060002_02638 PF00849 RNA pseudouridylate synthase V060002_02638 PF01479 S4 domain V060002_02639 PF01300 Telomere recombination V060002_02640 PF02811 PHP domain V060002_02641 PF00425 chorismate binding enzyme V060002_02641 PF04715 Anthranilate synthase component I, N terminal region V060002_02642 PF00117 Glutamine amidotransferase class-I V060002_02643 PF00591 Glycosyl transferase family, a/b domain V060002_02643 PF02885 Glycosyl transferase family, helical bundle domain V060002_02644 PF00218 Indole-3-glycerol phosphate synthase V060002_02644 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase V060002_02645 PF00291 Pyridoxal-phosphate dependent enzyme V060002_02646 PF00290 Tryptophan synthase alpha chain V060002_02647 PF00375 Sodium:dicarboxylate symporter family V060002_02648 PF00265 Thymidine kinase V060002_02649 PF00152 tRNA synthetases class II (D, K and N) V060002_02649 PF01336 OB-fold nucleic acid binding domain V060002_02649 PF02938 GAD domain V060002_02650 PF01904 Protein of unknown function DUF72 V060002_02651 PF13649 Methyltransferase domain V060002_02652 PF08003 Protein of unknown function (DUF1698) V060002_02653 PF05618 Putative ATP-dependant zinc protease V060002_02654 PF14400 V060002_02654 V060002_02654 PF14402 V060002_02654 V060002_02655 PF14397 V060002_02655 V060002_02656 PF00266 Aminotransferase class-V V060002_02657 PF06097 V060002_02657 V060002_02658 PF00027 Cyclic nucleotide-binding domain V060002_02658 PF00512 His Kinase A (phospho-acceptor) domain V060002_02658 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02659 PF00072 Response regulator receiver domain V060002_02661 PF04993 TfoX N-terminal domain V060002_02661 PF04994 TfoX C-terminal domain V060002_02662 PF08668 HDOD domain V060002_02663 PF03956 V060002_02663 V060002_02665 PF00282 Pyridoxal-dependent decarboxylase conserved domain V060002_02666 PF01380 SIS domain V060002_02666 PF01418 Helix-turn-helix domain, rpiR family V060002_02667 PF00465 Iron-containing alcohol dehydrogenase V060002_02668 PF00462 Glutaredoxin V060002_02669 PF02080 TrkA-C domain V060002_02669 PF06826 V060002_02669 V060002_02670 PF00004 ATPase family associated with various cellular activities (AAA) V060002_02670 PF02861 Clp amino terminal domain V060002_02670 PF07724 AAA domain (Cdc48 subfamily) V060002_02670 PF10431 C-terminal, D2-small domain, of ClpB protein V060002_02671 PF02617 ATP-dependent Clp protease adaptor protein ClpS V060002_02672 PF00313 'Cold-shock' DNA-binding domain V060002_02673 PF03971 Monomeric isocitrate dehydrogenase V060002_02674 PF00849 RNA pseudouridylate synthase V060002_02675 PF01502 Phosphoribosyl-AMP cyclohydrolase V060002_02675 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase V060002_02676 PF00977 Histidine biosynthesis protein V060002_02677 PF00977 Histidine biosynthesis protein V060002_02678 PF00117 Glutamine amidotransferase class-I V060002_02679 PF00475 Imidazoleglycerol-phosphate dehydratase V060002_02679 PF08645 Polynucleotide kinase 3 phosphatase V060002_02680 PF00155 Aminotransferase class I and II V060002_02681 PF00815 Histidinol dehydrogenase V060002_02682 PF01634 ATP phosphoribosyltransferase V060002_02682 PF08029 HisG, C-terminal domain V060002_02683 PF03553 V060002_02683 V060002_02684 PF00816 H-NS histone family V060002_02685 PF00294 pfkB family carbohydrate kinase V060002_02686 PF03054 tRNA methyl transferase V060002_02687 PF04356 Protein of unknown function (DUF489) V060002_02688 PF00206 Lyase V060002_02688 PF08328 Adenylosuccinate lyase C-terminal V060002_02689 PF12915 V060002_02689 V060002_02690 PF16036 V060002_02690 V060002_02691 PF11086 V060002_02691 V060002_02692 PF02353 Mycolic acid cyclopropane synthetase V060002_02693 PF07103 V060002_02693 V060002_02694 PF01593 Flavin containing amine oxidoreductase V060002_02695 PF00106 short chain dehydrogenase V060002_02696 PF12680 SnoaL-like domain V060002_02697 PF01435 Peptidase family M48 V060002_02699 PF13500 AAA domain V060002_02700 PF08241 Methyltransferase domain V060002_02701 PF00155 Aminotransferase class I and II V060002_02702 PF04055 Radical SAM superfamily V060002_02702 PF06968 Biotin and Thiamin Synthesis associated domain V060002_02703 PF00202 Aminotransferase class-III V060002_02704 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V060002_02704 PF02403 Seryl-tRNA synthetase N-terminal domain V060002_02705 PF00004 ATPase family associated with various cellular activities (AAA) V060002_02705 PF12002 MgsA AAA+ ATPase C terminal V060002_02705 PF16193 V060002_02705 V060002_02706 PF03548 Outer membrane lipoprotein carrier protein LolA V060002_02707 PF02810 SEC-C motif V060002_02707 PF03695 Uncharacterised protein family (UPF0149) V060002_02708 PF01207 Dihydrouridine synthase (Dus) V060002_02709 PF00990 GGDEF domain V060002_02710 PF00005 ABC transporter V060002_02711 PF02653 V060002_02711 V060002_02712 PF04392 ABC transporter substrate binding protein V060002_02713 PF09905 Uncharacterized conserved protein (DUF2132) V060002_02714 PF04217 V060002_02714 V060002_02715 PF00871 Acetokinase family V060002_02716 PF01515 Phosphate acetyl/butaryl transferase V060002_02716 PF07085 DRTGG domain V060002_02716 PF13500 AAA domain V060002_02717 PF13409 Glutathione S-transferase, N-terminal domain V060002_02717 PF13410 Glutathione S-transferase, C-terminal domain V060002_02718 PF00005 ABC transporter V060002_02718 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_02719 PF00005 ABC transporter V060002_02719 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_02720 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02720 PF12911 V060002_02720 V060002_02721 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02722 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_02723 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein V060002_02724 PF00672 HAMP domain V060002_02724 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02725 PF00072 Response regulator receiver domain V060002_02725 PF13487 HD domain V060002_02726 PF00072 Response regulator receiver domain V060002_02726 PF00563 EAL domain V060002_02727 PF00512 His Kinase A (phospho-acceptor) domain V060002_02727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02728 PF00512 His Kinase A (phospho-acceptor) domain V060002_02728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02728 PF08448 PAS fold V060002_02729 PF04509 CheC-like family V060002_02730 PF00072 Response regulator receiver domain V060002_02731 PF00072 Response regulator receiver domain V060002_02731 PF08668 HDOD domain V060002_02732 PF01627 Hpt domain V060002_02733 PF01300 Telomere recombination V060002_02733 PF03481 Putative GTP-binding controlling metal-binding V060002_02735 PF12833 Helix-turn-helix domain V060002_02736 PF01161 Phosphatidylethanolamine-binding protein V060002_02737 PF02517 CAAX protease self-immunity V060002_02738 PF00704 Glycosyl hydrolases family 18 V060002_02738 PF06483 V060002_02738 V060002_02738 PF14600 Cellulose-binding domain V060002_02739 PF07690 Major Facilitator Superfamily V060002_02740 PF00782 Dual specificity phosphatase, catalytic domain V060002_02741 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V060002_02741 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V060002_02742 PF01022 Bacterial regulatory protein, arsR family V060002_02743 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_02743 PF00990 GGDEF domain V060002_02745 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V060002_02746 PF09619 Type III secretion system lipoprotein chaperone (YscW) V060002_02747 PF13622 Thioesterase-like superfamily V060002_02748 PF01037 AsnC family V060002_02748 PF13412 Winged helix-turn-helix DNA-binding V060002_02749 PF00291 Pyridoxal-phosphate dependent enzyme V060002_02750 PF01343 Peptidase family S49 V060002_02750 PF08496 V060002_02750 V060002_02751 PF00106 short chain dehydrogenase V060002_02752 PF03692 V060002_02752 V060002_02753 PF03692 V060002_02753 V060002_02754 PF02132 RecR protein V060002_02754 PF13662 Toprim domain V060002_02755 PF02575 YbaB/EbfC DNA-binding family V060002_02756 PF12168 V060002_02756 V060002_02756 PF12169 DNA polymerase III subunits gamma and tau domain III V060002_02756 PF12170 DNA polymerase III tau subunit V interacting with alpha V060002_02756 PF13177 DNA polymerase III, delta subunit V060002_02757 PF00156 Phosphoribosyl transferase domain V060002_02758 PF04304 V060002_02758 V060002_02760 PF00072 Response regulator receiver domain V060002_02761 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02761 PF03466 LysR substrate binding domain V060002_02762 PF00881 Nitroreductase family V060002_02763 PF00378 Enoyl-CoA hydratase/isomerase family V060002_02763 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V060002_02763 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V060002_02764 PF00108 Thiolase, N-terminal domain V060002_02764 PF02803 Thiolase, C-terminal domain V060002_02765 PF04542 Sigma-70 region 2 V060002_02765 PF08281 Sigma-70, region 4 V060002_02766 PF11859 V060002_02766 V060002_02767 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) V060002_02768 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) V060002_02769 PF01451 Low molecular weight phosphotyrosine protein phosphatase V060002_02770 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP V060002_02770 PF12557 Cob(I)alamin adenosyltransferase N terminal V060002_02771 PF05170 V060002_02771 V060002_02772 PF00485 Phosphoribulokinase / Uridine kinase family V060002_02773 PF10609 ParA/MinD ATPase like V060002_02774 PF01588 Putative tRNA binding domain V060002_02774 PF09334 tRNA synthetases class I (M) V060002_02776 PF01048 Phosphorylase superfamily V060002_02777 PF00122 E1-E2 ATPase V060002_02777 PF00403 Heavy-metal-associated domain V060002_02777 PF00702 haloacid dehalogenase-like hydrolase V060002_02778 PF00571 CBS domain V060002_02779 PF00990 GGDEF domain V060002_02780 PF02391 MoaE protein V060002_02781 PF02597 ThiS family V060002_02782 PF01967 MoaC family V060002_02783 PF00994 Probable molybdopterin binding domain V060002_02784 PF04055 Radical SAM superfamily V060002_02784 PF06463 Molybdenum Cofactor Synthesis C V060002_02784 PF13353 4Fe-4S single cluster domain V060002_02785 PF01933 Uncharacterised protein family UPF0052 V060002_02786 PF01627 Hpt domain V060002_02787 PF00072 Response regulator receiver domain V060002_02787 PF00158 Sigma-54 interaction domain V060002_02787 PF02954 Bacterial regulatory protein, Fis family V060002_02788 PF00271 Helicase conserved C-terminal domain V060002_02788 PF02151 UvrB/uvrC motif V060002_02788 PF04851 Type III restriction enzyme, res subunit V060002_02788 PF12344 Ultra-violet resistance protein B V060002_02790 PF02508 V060002_02790 V060002_02791 PF04060 Putative Fe-S cluster V060002_02791 PF14697 4Fe-4S dicluster domain V060002_02792 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit V060002_02792 PF10531 SLBB domain V060002_02792 PF12838 4Fe-4S dicluster domain V060002_02792 PF13375 RnfC Barrel sandwich hybrid domain V060002_02793 PF03116 V060002_02793 V060002_02794 PF04205 FMN-binding domain V060002_02795 PF02508 V060002_02795 V060002_02796 PF00633 Helix-hairpin-helix motif V060002_02796 PF00730 HhH-GPD superfamily base excision DNA repair protein V060002_02796 PF10576 Iron-sulfur binding domain of endonuclease III V060002_02797 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V060002_02798 PF10952 V060002_02798 V060002_02799 PF00691 OmpA family V060002_02800 PF00929 Exonuclease V060002_02801 PF03553 V060002_02801 V060002_02801 PF13726 V060002_02801 V060002_02802 PF13522 Glutamine amidotransferase domain V060002_02803 PF02674 V060002_02803 V060002_02804 PF05036 Sporulation related domain V060002_02805 PF02875 Mur ligase family, glutamate ligase domain V060002_02805 PF08245 Mur ligase middle domain V060002_02806 PF01039 Carboxyl transferase domain V060002_02807 PF01416 tRNA pseudouridine synthase V060002_02809 PF00749 tRNA synthetases class I (E and Q), catalytic domain V060002_02809 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain V060002_02810 PF00367 phosphotransferase system, EIIB V060002_02810 PF02378 Phosphotransferase system, EIIC V060002_02811 PF01979 Amidohydrolase family V060002_02812 PF00480 ROK family V060002_02813 PF00999 Sodium/hydrogen exchanger family V060002_02813 PF02254 TrkA-N domain V060002_02814 PF00733 Asparagine synthase V060002_02814 PF13537 Glutamine amidotransferase domain V060002_02815 PF02357 Transcription termination factor nusG V060002_02816 PF00854 POT family V060002_02817 PF00762 Ferrochelatase V060002_02818 PF00406 Adenylate kinase V060002_02818 PF05191 Adenylate kinase, active site lid V060002_02819 PF00183 Hsp90 protein V060002_02819 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_02820 PF00486 Transcriptional regulatory protein, C terminal V060002_02822 PF17323 V060002_02822 V060002_02823 PF10262 Rdx family V060002_02824 PF12850 Calcineurin-like phosphoesterase superfamily domain V060002_02825 PF01370 NAD dependent epimerase/dehydratase family V060002_02825 PF08338 Domain of unknown function (DUF1731) V060002_02826 PF00106 short chain dehydrogenase V060002_02827 PF00085 Thioredoxin V060002_02827 PF14559 Tetratricopeptide repeat V060002_02827 PF14561 Tetratricopeptide repeat V060002_02828 PF01145 SPFH domain / Band 7 family V060002_02828 PF16200 V060002_02828 V060002_02829 PF01957 NfeD-like C-terminal, partner-binding V060002_02830 PF13411 MerR HTH family regulatory protein V060002_02832 PF13609 Gram-negative porin V060002_02833 PF00533 BRCA1 C Terminus (BRCT) domain V060002_02833 PF01653 NAD-dependent DNA ligase adenylation domain V060002_02833 PF03119 NAD-dependent DNA ligase C4 zinc finger domain V060002_02833 PF03120 NAD-dependent DNA ligase OB-fold domain V060002_02833 PF12826 Helix-hairpin-helix motif V060002_02833 PF14520 Helix-hairpin-helix domain V060002_02834 PF04354 ZipA, C-terminal FtsZ-binding domain V060002_02835 PF07264 Etoposide-induced protein 2 V060002_02836 PF00291 Pyridoxal-phosphate dependent enzyme V060002_02837 PF00381 PTS HPr component phosphorylation site V060002_02838 PF00391 PEP-utilising enzyme, mobile domain V060002_02838 PF02896 PEP-utilising enzyme, TIM barrel domain V060002_02838 PF05524 PEP-utilising enzyme, N-terminal V060002_02839 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V060002_02840 PF01494 FAD binding domain V060002_02841 PF00919 Uncharacterized protein family UPF0004 V060002_02841 PF01938 TRAM domain V060002_02841 PF04055 Radical SAM superfamily V060002_02842 PF02562 PhoH-like protein V060002_02843 PF02130 Uncharacterized protein family UPF0054 V060002_02844 PF00571 CBS domain V060002_02844 PF03471 Transporter associated domain V060002_02845 PF00795 Carbon-nitrogen hydrolase V060002_02846 PF07295 V060002_02846 V060002_02847 PF00133 tRNA synthetases class I (I, L, M and V) V060002_02847 PF08264 Anticodon-binding domain of tRNA V060002_02847 PF13603 Leucyl-tRNA synthetase, Domain 2 V060002_02848 PF04390 Lipopolysaccharide-assembly V060002_02849 PF06144 DNA polymerase III, delta subunit V060002_02849 PF14840 Processivity clamp loader gamma complex DNA pol III C-term V060002_02850 PF02410 Oligomerisation domain V060002_02851 PF02590 Predicted SPOUT methyltransferase V060002_02852 PF00905 Penicillin binding protein transpeptidase domain V060002_02852 PF03717 Penicillin-binding Protein dimerisation domain V060002_02853 PF01098 V060002_02853 V060002_02854 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel V060002_02854 PF05036 Sporulation related domain V060002_02855 PF00768 D-alanyl-D-alanine carboxypeptidase V060002_02855 PF07943 Penicillin-binding protein 5, C-terminal domain V060002_02856 PF04359 Protein of unknown function (DUF493) V060002_02857 PF03099 Biotin/lipoate A/B protein ligase family V060002_02858 PF04055 Radical SAM superfamily V060002_02858 PF16881 V060002_02858 V060002_02860 PF00464 Serine hydroxymethyltransferase V060002_02861 PF02588 V060002_02861 V060002_02862 PF04892 V060002_02862 V060002_02864 PF02706 Chain length determinant protein V060002_02864 PF13614 AAA domain V060002_02864 PF13807 V060002_02864 V060002_02865 PF02563 Polysaccharide biosynthesis/export protein V060002_02865 PF10531 SLBB domain V060002_02866 PF10082 V060002_02866 V060002_02867 PF02397 V060002_02867 V060002_02867 PF13727 CoA-binding domain V060002_02869 PF04932 V060002_02869 V060002_02870 PF16458 V060002_02870 V060002_02871 PF12708 Pectate lyase superfamily protein V060002_02873 PF03808 V060002_02873 V060002_02875 PF00534 Glycosyl transferases group 1 V060002_02876 PF00501 AMP-binding enzyme V060002_02877 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_02879 PF13440 V060002_02879 V060002_02879 PF14667 Polysaccharide biosynthesis C-terminal domain V060002_02880 PF00534 Glycosyl transferases group 1 V060002_02880 PF13439 Glycosyltransferase Family 4 V060002_02881 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_02882 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain V060002_02882 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain V060002_02882 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain V060002_02883 PF02350 UDP-N-acetylglucosamine 2-epimerase V060002_02885 PF01451 Low molecular weight phosphotyrosine protein phosphatase V060002_02886 PF00873 AcrB/AcrD/AcrF family V060002_02887 PF16576 V060002_02887 V060002_02892 PF00128 Alpha amylase, catalytic domain V060002_02893 PF00367 phosphotransferase system, EIIB V060002_02893 PF02378 Phosphotransferase system, EIIC V060002_02894 PF00356 Bacterial regulatory proteins, lacI family V060002_02894 PF13377 Periplasmic binding protein-like domain V060002_02895 PF13242 HAD-hyrolase-like V060002_02896 PF00005 ABC transporter V060002_02896 PF09383 NIL domain V060002_02897 PF00528 Binding-protein-dependent transport system inner membrane component V060002_02898 PF03180 NLPA lipoprotein V060002_02899 PF10071 V060002_02899 V060002_02900 PF07348 Syd protein (SUKH-2) V060002_02901 PF14489 QueF-like protein V060002_02901 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term V060002_02902 PF13424 Tetratricopeptide repeat V060002_02903 PF00990 GGDEF domain V060002_02904 PF03641 Possible lysine decarboxylase V060002_02904 PF11892 Domain of unknown function (DUF3412) V060002_02904 PF14793 Domain of unknown function (DUF4478) V060002_02905 PF01367 5'-3' exonuclease, C-terminal SAM fold V060002_02905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V060002_02906 PF04241 V060002_02906 V060002_02907 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_02907 PF03466 LysR substrate binding domain V060002_02908 PF02568 Thiamine biosynthesis protein (ThiI) V060002_02908 PF02926 THUMP domain V060002_02909 PF00691 OmpA family V060002_02909 PF13677 V060002_02909 V060002_02910 PF01618 V060002_02910 V060002_02911 PF02609 Exonuclease VII small subunit V060002_02912 PF00348 Polyprenyl synthetase V060002_02913 PF02779 Transketolase, pyrimidine binding domain V060002_02913 PF02780 Transketolase, C-terminal domain V060002_02913 PF13292 1-deoxy-D-xylulose-5-phosphate synthase V060002_02914 PF00849 RNA pseudouridylate synthase V060002_02915 PF04287 tRNA pseudouridine synthase C V060002_02916 PF12069 V060002_02916 V060002_02917 PF11743 V060002_02917 V060002_02918 PF13302 Acetyltransferase (GNAT) domain V060002_02920 PF02639 V060002_02920 V060002_02921 PF03806 V060002_02921 V060002_02922 PF00444 Ribosomal protein L36 V060002_02923 PF01197 Ribosomal protein L31 V060002_02924 PF01980 Uncharacterised protein family UPF0066 V060002_02925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V060002_02925 PF03129 Anticodon binding domain V060002_02925 PF04073 Aminoacyl-tRNA editing domain V060002_02926 PF04391 V060002_02926 V060002_02927 PF06786 V060002_02927 V060002_02928 PF14056 V060002_02928 V060002_02929 PF01797 Transposase IS200 like V060002_02930 PF02769 AIR synthase related protein, C-terminal domain V060002_02930 PF13507 CobB/CobQ-like glutamine amidotransferase domain V060002_02931 PF00497 Bacterial extracellular solute-binding proteins, family 3 V060002_02931 PF01464 Transglycosylase SLT domain V060002_02933 PF14437 V060002_02933 V060002_02934 PF03806 V060002_02934 V060002_02935 PF07963 Prokaryotic N-terminal methylation motif V060002_02937 PF07963 Prokaryotic N-terminal methylation motif V060002_02938 PF07963 Prokaryotic N-terminal methylation motif V060002_02938 PF12019 Type II transport protein GspH V060002_02939 PF07963 Prokaryotic N-terminal methylation motif V060002_02939 PF16732 V060002_02939 V060002_02940 PF00226 DnaJ domain V060002_02940 PF00684 DnaJ central domain V060002_02940 PF01556 DnaJ C terminal domain V060002_02941 PF00012 Hsp70 protein V060002_02942 PF01025 GrpE V060002_02943 PF01513 ATP-NAD kinase V060002_02944 PF13476 AAA domain V060002_02945 PF04355 SmpA / OmlA family V060002_02946 PF03658 RnfH family Ubiquitin V060002_02947 PF03364 Polyketide cyclase / dehydrase and lipid transport V060002_02948 PF01668 SmpB protein V060002_02950 PF00589 Phage integrase family V060002_02950 PF13356 Domain of unknown function (DUF4102) V060002_02951 PF13322 V060002_02951 V060002_02951 PF13402 Peptidase M60-like family V060002_02951 PF17291 V060002_02951 V060002_02952 PF13505 Outer membrane protein beta-barrel domain V060002_02953 PF01551 Peptidase family M23 V060002_02955 PF06271 V060002_02955 V060002_02956 PF13531 Bacterial extracellular solute-binding protein V060002_02957 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02957 PF00672 HAMP domain V060002_02957 PF02743 Cache domain V060002_02958 PF01478 Type IV leader peptidase family V060002_02958 PF06750 V060002_02958 V060002_02959 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family V060002_02960 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F V060002_02961 PF00482 Type II secretion system (T2SS), protein F V060002_02962 PF00437 Type II/IV secretion system protein V060002_02963 PF17456 V060002_02963 V060002_02967 PF10671 Toxin co-regulated pilus biosynthesis protein Q V060002_02969 PF05946 Toxin-coregulated pilus subunit TcpA V060002_02969 PF07963 Prokaryotic N-terminal methylation motif V060002_02971 PF00486 Transcriptional regulatory protein, C terminal V060002_02972 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_02973 PF08534 Redoxin V060002_02975 PF00030 Beta/Gamma crystallin V060002_02976 PF00041 Fibronectin type III domain V060002_02976 PF10462 Peptidase M66 V060002_02976 PF12561 V060002_02976 V060002_02977 PF00171 Aldehyde dehydrogenase family V060002_02978 PF00665 Integrase core domain V060002_02980 PF07804 HipA-like C-terminal domain V060002_02981 PF01381 Helix-turn-helix V060002_02982 PF13489 Methyltransferase domain V060002_02983 PF00271 Helicase conserved C-terminal domain V060002_02983 PF04851 Type III restriction enzyme, res subunit V060002_02983 PF13091 PLD-like domain V060002_02984 PF08378 V060002_02984 V060002_02986 PF04434 V060002_02986 V060002_02989 PF11953 Domain of unknown function (DUF3470) V060002_02989 PF13187 4Fe-4S dicluster domain V060002_02990 PF00588 SpoU rRNA Methylase family V060002_02991 PF10000 ACT domain V060002_02991 PF13840 ACT domain V060002_02992 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase V060002_02993 PF03802 V060002_02993 V060002_02994 PF04223 Citrate lyase, alpha subunit (CitF) V060002_02995 PF03328 HpcH/HpaI aldolase/citrate lyase family V060002_02996 PF06857 V060002_02996 V060002_02997 PF08218 Citrate lyase ligase C-terminal domain V060002_02997 PF13673 Acetyltransferase (GNAT) domain V060002_02998 PF03390 V060002_02998 V060002_02999 PF04277 V060002_02999 V060002_03000 PF00364 Biotin-requiring enzyme V060002_03000 PF00682 HMGL-like V060002_03000 PF02436 Conserved carboxylase domain V060002_03001 PF03977 V060002_03001 V060002_03002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_03002 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain V060002_03002 PF17203 V060002_03002 V060002_03003 PF00072 Response regulator receiver domain V060002_03003 PF12431 V060002_03003 V060002_03005 PF08883 Dopa 4,5-dioxygenase family V060002_03006 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03006 PF03466 LysR substrate binding domain V060002_03007 PF01266 FAD dependent oxidoreductase V060002_03008 PF01235 V060002_03008 V060002_03009 PF00753 Metallo-beta-lactamase superfamily V060002_03009 PF14863 Alkyl sulfatase dimerisation V060002_03009 PF14864 Alkyl sulfatase C-terminal V060002_03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03010 PF03466 LysR substrate binding domain V060002_03011 PF01648 4'-phosphopantetheinyl transferase superfamily V060002_03012 PF00005 ABC transporter V060002_03013 PF01032 FecCD transport family V060002_03014 PF01032 FecCD transport family V060002_03015 PF01497 Periplasmic binding protein V060002_03016 PF00668 Condensation domain V060002_03017 PF13561 Enoyl-(Acyl carrier protein) reductase V060002_03018 PF00425 chorismate binding enzyme V060002_03019 PF00501 AMP-binding enzyme V060002_03019 PF13193 AMP-binding enzyme C-terminal domain V060002_03020 PF00550 Phosphopantetheine attachment site V060002_03020 PF00857 Isochorismatase family V060002_03021 PF01184 V060002_03021 V060002_03022 PF00182 Chitinase class I V060002_03022 PF02839 Carbohydrate binding domain V060002_03023 PF00117 Glutamine amidotransferase class-I V060002_03023 PF00958 GMP synthase C terminal domain V060002_03023 PF02540 NAD synthase V060002_03024 PF00478 IMP dehydrogenase / GMP reductase domain V060002_03024 PF00571 CBS domain V060002_03025 PF02601 V060002_03025 V060002_03025 PF13742 V060002_03025 V060002_03026 PF07191 zinc-ribbons V060002_03028 PF01926 50S ribosome-binding GTPase V060002_03028 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal V060002_03029 PF13360 PQQ-like domain V060002_03030 PF09976 Tetratricopeptide repeat V060002_03031 PF03129 Anticodon binding domain V060002_03031 PF13393 Histidyl-tRNA synthetase V060002_03032 PF04551 GcpE protein V060002_03033 PF13413 Helix-turn-helix domain V060002_03033 PF13464 V060002_03033 V060002_03034 PF04055 Radical SAM superfamily V060002_03035 PF00334 Nucleoside diphosphate kinase V060002_03036 PF00883 Cytosol aminopeptidase family, catalytic domain V060002_03036 PF12404 V060002_03036 V060002_03037 PF04384 Iron-sulphur cluster assembly V060002_03038 PF00111 2Fe-2S iron-sulfur cluster binding domain V060002_03039 PF00012 Hsp70 protein V060002_03040 PF00226 DnaJ domain V060002_03040 PF07743 HSCB C-terminal oligomerisation domain V060002_03041 PF01521 Iron-sulphur cluster biosynthesis V060002_03042 PF01592 NifU-like N terminal domain V060002_03043 PF00266 Aminotransferase class-V V060002_03044 PF02082 Transcriptional regulator V060002_03045 PF00588 SpoU rRNA Methylase family V060002_03046 PF00459 Inositol monophosphatase family V060002_03047 PF02355 Protein export membrane protein V060002_03047 PF07549 SecD/SecF GG Motif V060002_03048 PF02355 Protein export membrane protein V060002_03048 PF07549 SecD/SecF GG Motif V060002_03048 PF13721 SecD export protein N-terminal TM region V060002_03049 PF02699 Preprotein translocase subunit V060002_03050 PF01702 Queuine tRNA-ribosyltransferase V060002_03051 PF02547 Queuosine biosynthesis protein V060002_03052 PF00571 CBS domain V060002_03053 PF00463 Isocitrate lyase family V060002_03054 PF01274 Malate synthase V060002_03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03055 PF03466 LysR substrate binding domain V060002_03056 PF00578 AhpC/TSA family V060002_03056 PF10417 C-terminal domain of 1-Cys peroxiredoxin V060002_03057 PF03932 CutC family V060002_03058 PF03976 Polyphosphate kinase 2 (PPK2) V060002_03059 PF01895 PhoU domain V060002_03060 PF00005 ABC transporter V060002_03061 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03062 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03063 PF02503 Polyphosphate kinase middle domain V060002_03063 PF13089 Polyphosphate kinase N-terminal domain V060002_03063 PF13090 Polyphosphate kinase C-terminal domain V060002_03064 PF02541 Ppx/GppA phosphatase family V060002_03065 PF12849 PBP superfamily domain V060002_03066 PF00512 His Kinase A (phospho-acceptor) domain V060002_03066 PF00989 PAS fold V060002_03066 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_03066 PF11808 V060002_03066 V060002_03067 PF00072 Response regulator receiver domain V060002_03067 PF00486 Transcriptional regulatory protein, C terminal V060002_03068 PF04381 Putative exonuclease, RdgC V060002_03069 PF01136 V060002_03069 V060002_03069 PF16325 V060002_03069 V060002_03070 PF00037 4Fe-4S binding domain V060002_03071 PF00881 Nitroreductase family V060002_03072 PF08921 Domain of unknown function (DUF1904) V060002_03078 PF00004 ATPase family associated with various cellular activities (AAA) V060002_03078 PF02861 Clp amino terminal domain V060002_03078 PF07724 AAA domain (Cdc48 subfamily) V060002_03078 PF10431 C-terminal, D2-small domain, of ClpB protein V060002_03079 PF02578 Multi-copper polyphenol oxidoreductase laccase V060002_03080 PF00849 RNA pseudouridylate synthase V060002_03080 PF01479 S4 domain V060002_03081 PF13525 Outer membrane lipoprotein V060002_03082 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V060002_03083 PF00800 Prephenate dehydratase V060002_03083 PF01817 Chorismate mutase type II V060002_03084 PF13416 Bacterial extracellular solute-binding protein V060002_03085 PF00563 EAL domain V060002_03085 PF00990 GGDEF domain V060002_03086 PF01931 Protein of unknown function DUF84 V060002_03087 PF01371 Trp repressor protein V060002_03088 PF01464 Transglycosylase SLT domain V060002_03088 PF14718 Soluble lytic murein transglycosylase L domain V060002_03089 PF00005 ABC transporter V060002_03089 PF12848 ABC transporter V060002_03090 PF07238 PilZ domain V060002_03091 PF01817 Chorismate mutase type II V060002_03091 PF02153 Prephenate dehydrogenase V060002_03092 PF00793 DAHP synthetase I family V060002_03093 PF06580 V060002_03093 V060002_03093 PF07694 5TMR of 5TMR-LYT V060002_03093 PF13492 GAF domain V060002_03094 PF00072 Response regulator receiver domain V060002_03094 PF04397 LytTr DNA-binding domain V060002_03095 PF00933 Glycosyl hydrolase family 3 N terminal domain V060002_03096 PF03702 Uncharacterised protein family (UPF0075) V060002_03097 PF13580 SIS domain V060002_03098 PF02254 TrkA-N domain V060002_03099 PF00999 Sodium/hydrogen exchanger family V060002_03100 PF10973 V060002_03100 V060002_03101 PF02554 V060002_03101 V060002_03101 PF13722 V060002_03101 V060002_03102 PF02401 LytB protein V060002_03103 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V060002_03104 PF01252 V060002_03104 V060002_03105 PF00133 tRNA synthetases class I (I, L, M and V) V060002_03105 PF06827 Zinc finger found in FPG and IleRS V060002_03105 PF08264 Anticodon-binding domain of tRNA V060002_03106 PF01687 Riboflavin kinase V060002_03106 PF06574 FAD synthetase V060002_03107 PF03023 V060002_03107 V060002_03108 PF01649 Ribosomal protein S20 V060002_03109 PF01022 Bacterial regulatory protein, arsR family V060002_03110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03110 PF03466 LysR substrate binding domain V060002_03111 PF02690 V060002_03111 V060002_03112 PF00303 Thymidylate synthase V060002_03113 PF01790 V060002_03113 V060002_03114 PF01925 V060002_03114 V060002_03115 PF00391 PEP-utilising enzyme, mobile domain V060002_03115 PF01590 GAF domain V060002_03115 PF02896 PEP-utilising enzyme, TIM barrel domain V060002_03115 PF05524 PEP-utilising enzyme, N-terminal V060002_03116 PF00293 NUDIX domain V060002_03117 PF02976 DNA mismatch repair enzyme MutH V060002_03118 PF00248 Aldo/keto reductase family V060002_03120 PF00158 Sigma-54 interaction domain V060002_03120 PF02954 Bacterial regulatory protein, Fis family V060002_03121 PF00152 tRNA synthetases class II (D, K and N) V060002_03121 PF01336 OB-fold nucleic acid binding domain V060002_03122 PF00472 RF-1 domain V060002_03122 PF03462 PCRF domain V060002_03123 PF05525 V060002_03123 V060002_03124 PF05175 Methyltransferase small domain V060002_03125 PF00270 DEAD/DEAH box helicase V060002_03125 PF00271 Helicase conserved C-terminal domain V060002_03126 PF00009 Elongation factor Tu GTP binding domain V060002_03126 PF03144 Elongation factor Tu domain 2 V060002_03126 PF16658 V060002_03126 V060002_03127 PF00563 EAL domain V060002_03127 PF00990 GGDEF domain V060002_03128 PF00583 Acetyltransferase (GNAT) family V060002_03129 PF03603 DNA polymerase III psi subunit V060002_03130 PF13527 Acetyltransferase (GNAT) domain V060002_03131 PF02036 SCP-2 sterol transfer family V060002_03132 PF00563 EAL domain V060002_03132 PF00990 GGDEF domain V060002_03132 PF08448 PAS fold V060002_03132 PF13188 PAS domain V060002_03133 PF01136 V060002_03133 V060002_03134 PF01136 V060002_03134 V060002_03135 PF01554 MatE V060002_03136 PF01554 MatE V060002_03137 PF01047 MarR family V060002_03139 PF00013 KH domain V060002_03139 PF00575 S1 RNA binding domain V060002_03139 PF01138 3' exoribonuclease family, domain 1 V060002_03139 PF03725 3' exoribonuclease family, domain 2 V060002_03139 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain V060002_03140 PF00312 Ribosomal protein S15 V060002_03141 PF01509 TruB family pseudouridylate synthase (N terminal domain) V060002_03141 PF09157 Pseudouridine synthase II TruB, C-terminal V060002_03141 PF16198 V060002_03141 V060002_03142 PF02033 Ribosome-binding factor A V060002_03143 PF00009 Elongation factor Tu GTP binding domain V060002_03143 PF04760 Translation initiation factor IF-2, N-terminal region V060002_03143 PF08364 V060002_03143 V060002_03143 PF11987 Translation-initiation factor 2 V060002_03144 PF08529 NusA N-terminal domain V060002_03144 PF13184 NusA-like KH domain V060002_03144 PF14520 Helix-hairpin-helix domain V060002_03145 PF02576 Uncharacterised BCR, YhbC family COG0779 V060002_03145 PF17384 V060002_03145 V060002_03148 PF03840 Preprotein translocase SecG subunit V060002_03150 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V060002_03150 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V060002_03150 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V060002_03150 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V060002_03151 PF00809 Pterin binding enzyme V060002_03152 PF00004 ATPase family associated with various cellular activities (AAA) V060002_03152 PF01434 Peptidase family M41 V060002_03152 PF06480 FtsH Extracellular V060002_03153 PF01728 FtsJ-like methyltransferase V060002_03154 PF01985 CRS1 / YhbY (CRM) domain V060002_03155 PF01272 Transcription elongation factor, GreA/GreB, C-term V060002_03155 PF03449 Transcription elongation factor, N-terminal V060002_03156 PF13609 Gram-negative porin V060002_03157 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family V060002_03158 PF00579 tRNA synthetases class I (W and Y) V060002_03158 PF01479 S4 domain V060002_03159 PF01551 Peptidase family M23 V060002_03159 PF08525 V060002_03159 V060002_03160 PF00873 AcrB/AcrD/AcrF family V060002_03161 PF16576 V060002_03161 V060002_03162 PF01521 Iron-sulphur cluster biosynthesis V060002_03163 PF00202 Aminotransferase class-III V060002_03165 PF01594 V060002_03165 V060002_03166 PF05175 Methyltransferase small domain V060002_03166 PF08468 Methyltransferase small domain N-terminal V060002_03167 PF00072 Response regulator receiver domain V060002_03167 PF00512 His Kinase A (phospho-acceptor) domain V060002_03167 PF00672 HAMP domain V060002_03167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_03167 PF13188 PAS domain V060002_03168 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_03169 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03170 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03170 PF12911 V060002_03170 V060002_03171 PF00005 ABC transporter V060002_03171 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_03172 PF00005 ABC transporter V060002_03172 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_03173 PF00759 Glycosyl hydrolase family 9 V060002_03173 PF02927 N-terminal ig-like domain of cellulase V060002_03174 PF01869 BadF/BadG/BcrA/BcrD ATPase family V060002_03175 PF00728 Glycosyl hydrolase family 20, catalytic domain V060002_03175 PF02838 Glycosyl hydrolase family 20, domain 2 V060002_03176 PF06165 Glycosyltransferase family 36 V060002_03176 PF17167 V060002_03176 V060002_03177 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V060002_03177 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V060002_03177 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V060002_03177 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V060002_03178 PF00005 ABC transporter V060002_03178 PF08402 TOBE domain V060002_03179 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03180 PF13343 Bacterial extracellular solute-binding protein V060002_03181 PF00909 Ammonium Transporter Family V060002_03182 PF00543 Nitrogen regulatory protein P-II V060002_03183 PF06062 V060002_03183 V060002_03184 PF00330 Aconitase family (aconitate hydratase) V060002_03184 PF06434 Aconitate hydratase 2 N-terminus V060002_03184 PF11791 Aconitate B N-terminal domain V060002_03185 PF01734 Patatin-like phospholipase V060002_03185 PF07244 Surface antigen variable number repeat V060002_03186 PF00905 Penicillin binding protein transpeptidase domain V060002_03186 PF00912 Transglycosylase V060002_03186 PF14814 Bifunctional transglycosylase second domain V060002_03187 PF00270 DEAD/DEAH box helicase V060002_03187 PF00271 Helicase conserved C-terminal domain V060002_03187 PF04408 Helicase associated domain (HA2) V060002_03187 PF08482 V060002_03187 V060002_03188 PF12697 Alpha/beta hydrolase family V060002_03189 PF03749 Sugar fermentation stimulation protein V060002_03190 PF01258 Prokaryotic dksA/traR C4-type zinc finger V060002_03191 PF00749 tRNA synthetases class I (E and Q), catalytic domain V060002_03192 PF01743 Poly A polymerase head domain V060002_03192 PF12626 Polymerase A arginine-rich C-terminus V060002_03192 PF12627 Probable RNA and SrmB- binding site of polymerase A V060002_03193 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V060002_03194 PF02548 Ketopantoate hydroxymethyltransferase V060002_03195 PF02569 Pantoate-beta-alanine ligase V060002_03196 PF01061 V060002_03196 V060002_03197 PF00005 ABC transporter V060002_03198 PF00916 V060002_03198 V060002_03198 PF01740 STAS domain V060002_03199 PF00484 Carbonic anhydrase V060002_03200 PF00156 Phosphoribosyl transferase domain V060002_03201 PF00440 Bacterial regulatory proteins, tetR family V060002_03202 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V060002_03203 PF04348 LppC putative lipoprotein V060002_03204 PF02021 Uncharacterised protein family UPF0102 V060002_03205 PF13580 SIS domain V060002_03206 PF04972 BON domain V060002_03207 PF04386 Stringent starvation protein B V060002_03208 PF00043 Glutathione S-transferase, C-terminal domain V060002_03208 PF13417 Glutathione S-transferase, N-terminal domain V060002_03209 PF02167 Cytochrome C1 family V060002_03210 PF00032 Cytochrome b(C-terminal)/b6/petD V060002_03210 PF00033 Cytochrome b(N-terminal)/b6/petB V060002_03211 PF00355 Rieske [2Fe-2S] domain V060002_03211 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal V060002_03212 PF00380 Ribosomal protein S9/S16 V060002_03213 PF00572 Ribosomal protein L13 V060002_03214 PF03969 AFG1-like ATPase V060002_03215 PF06295 V060002_03215 V060002_03216 PF00595 PDZ domain (Also known as DHR or GLGF) V060002_03216 PF13180 PDZ domain V060002_03216 PF13365 Trypsin-like peptidase domain V060002_03217 PF13180 PDZ domain V060002_03217 PF13365 Trypsin-like peptidase domain V060002_03218 PF01245 Ribosomal protein L19 V060002_03219 PF01746 tRNA (Guanine-1)-methyltransferase V060002_03220 PF01782 RimM N-terminal domain V060002_03220 PF05239 PRC-barrel domain V060002_03221 PF00886 Ribosomal protein S16 V060002_03222 PF00448 SRP54-type protein, GTPase domain V060002_03222 PF02881 SRP54-type protein, helical bundle domain V060002_03222 PF02978 Signal peptide binding domain V060002_03223 PF01578 V060002_03223 V060002_03224 PF00571 CBS domain V060002_03224 PF01595 V060002_03224 V060002_03224 PF03471 Transporter associated domain V060002_03225 PF02664 S-Ribosylhomocysteinase (LuxS) V060002_03226 PF04262 Glutamate-cysteine ligase V060002_03227 PF00675 Insulinase (Peptidase family M16) V060002_03227 PF05193 Peptidase M16 inactive domain V060002_03228 PF09335 V060002_03228 V060002_03229 PF08240 Alcohol dehydrogenase GroES-like domain V060002_03229 PF13602 Zinc-binding dehydrogenase V060002_03230 PF03977 V060002_03230 V060002_03231 PF00364 Biotin-requiring enzyme V060002_03231 PF00682 HMGL-like V060002_03231 PF02436 Conserved carboxylase domain V060002_03232 PF04277 V060002_03232 V060002_03241 PF02599 Global regulator protein family V060002_03242 PF00696 Amino acid kinase family V060002_03243 PF01411 tRNA synthetases class II (A) V060002_03243 PF02272 DHHA1 domain V060002_03243 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V060002_03244 PF02631 RecX family V060002_03245 PF00154 recA bacterial DNA recombination protein V060002_03246 PF02464 Competence-damaged protein V060002_03247 PF00005 ABC transporter V060002_03247 PF12857 V060002_03247 V060002_03248 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03249 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03250 PF13531 Bacterial extracellular solute-binding protein V060002_03251 PF00291 Pyridoxal-phosphate dependent enzyme V060002_03252 PF00488 MutS domain V V060002_03252 PF01624 MutS domain I V060002_03252 PF05188 MutS domain II V060002_03252 PF05190 MutS family domain IV V060002_03252 PF05192 MutS domain III V060002_03253 PF00140 Sigma-70 factor, region 1 V060002_03253 PF04539 Sigma-70 region 3 V060002_03253 PF04542 Sigma-70 region 2 V060002_03253 PF04545 Sigma-70, region 4 V060002_03254 PF01476 LysM domain V060002_03254 PF01551 Peptidase family M23 V060002_03255 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) V060002_03256 PF01975 Survival protein SurE V060002_03257 PF01142 tRNA pseudouridine synthase D (TruD) V060002_03258 PF02542 YgbB family V060002_03259 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase V060002_03260 PF04977 Septum formation initiator V060002_03261 PF02673 V060002_03261 V060002_03262 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V060002_03263 PF02152 Dihydroneopterin aldolase V060002_03264 PF02660 V060002_03264 V060002_03265 PF00561 alpha/beta hydrolase fold V060002_03266 PF00814 Glycoprotease family V060002_03267 PF01165 Ribosomal protein S21 V060002_03268 PF09424 Yqey-like protein V060002_03269 PF01807 CHC2 zinc finger V060002_03269 PF08275 DNA primase catalytic core, N-terminal domain V060002_03269 PF08278 DNA primase DnaG DnaB-binding V060002_03269 PF10410 DnaB-helicase binding domain of primase V060002_03269 PF13155 Toprim-like V060002_03270 PF00140 Sigma-70 factor, region 1 V060002_03270 PF03979 Sigma-70 factor, region 1 V060002_03270 PF04539 Sigma-70 region 3 V060002_03270 PF04542 Sigma-70 region 2 V060002_03270 PF04545 Sigma-70, region 4 V060002_03270 PF04546 Sigma-70, non-essential region V060002_03272 PF00589 Phage integrase family V060002_03272 PF13356 Domain of unknown function (DUF4102) V060002_03272 PF14659 Phage integrase, N-terminal SAM-like domain V060002_03273 PF00563 EAL domain V060002_03273 PF08668 HDOD domain V060002_03274 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_03274 PF02743 Cache domain V060002_03275 PF12833 Helix-turn-helix domain V060002_03276 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_03276 PF08447 PAS fold V060002_03278 PF04002 RadC-like JAB domain V060002_03279 PF10980 Protein of unknown function (DUF2787) V060002_03280 PF10980 Protein of unknown function (DUF2787) V060002_03281 PF13280 V060002_03281 V060002_03284 PF01551 Peptidase family M23 V060002_03284 PF04225 Opacity-associated protein A LysM-like domain V060002_03285 PF07963 Prokaryotic N-terminal methylation motif V060002_03286 PF13737 V060002_03286 V060002_03287 PF01527 Transposase V060002_03288 PF00665 Integrase core domain V060002_03289 PF00075 RNase H V060002_03290 PF05930 Prophage CP4-57 regulatory protein (AlpA) V060002_03291 PF11726 V060002_03291 V060002_03292 PF11726 V060002_03292 V060002_03293 PF11726 V060002_03293 V060002_03297 PF12532 V060002_03297 V060002_03298 PF01553 Acyltransferase V060002_03298 PF13444 Acetyltransferase (GNAT) domain V060002_03299 PF03480 Bacterial extracellular solute-binding protein, family 7 V060002_03300 PF01380 SIS domain V060002_03300 PF13522 Glutamine amidotransferase domain V060002_03301 PF00455 V060002_03301 V060002_03301 PF08220 DeoR-like helix-turn-helix domain V060002_03302 PF00224 Pyruvate kinase, barrel domain V060002_03302 PF02887 Pyruvate kinase, alpha/beta domain V060002_03304 PF04402 Protein of unknown function (DUF541) V060002_03305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03305 PF03466 LysR substrate binding domain V060002_03306 PF01810 V060002_03306 V060002_03307 PF00924 Mechanosensitive ion channel V060002_03307 PF05552 Conserved TM helix V060002_03308 PF01116 Fructose-bisphosphate aldolase class-II V060002_03309 PF00162 Phosphoglycerate kinase V060002_03310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V060002_03310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V060002_03311 PF00593 TonB dependent receptor V060002_03311 PF07715 TonB-dependent Receptor Plug Domain V060002_03312 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03312 PF03466 LysR substrate binding domain V060002_03313 PF00456 Transketolase, thiamine diphosphate binding domain V060002_03313 PF02779 Transketolase, pyrimidine binding domain V060002_03313 PF02780 Transketolase, C-terminal domain V060002_03314 PF00438 S-adenosylmethionine synthetase, N-terminal domain V060002_03314 PF02772 S-adenosylmethionine synthetase, central domain V060002_03314 PF02773 S-adenosylmethionine synthetase, C-terminal domain V060002_03315 PF10263 V060002_03315 V060002_03315 PF17283 V060002_03315 V060002_03316 PF04231 Endonuclease I V060002_03317 PF04452 RNA methyltransferase V060002_03318 PF02951 Prokaryotic glutathione synthetase, N-terminal domain V060002_03318 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain V060002_03319 PF02622 Uncharacterized ACR, COG1678 V060002_03320 PF03652 Uncharacterised protein family (UPF0081) V060002_03321 PF00579 tRNA synthetases class I (W and Y) V060002_03321 PF01479 S4 domain V060002_03322 PF00196 Bacterial regulatory proteins, luxR family V060002_03323 PF00437 Type II/IV secretion system protein V060002_03324 PF00437 Type II/IV secretion system protein V060002_03325 PF01168 Alanine racemase, N-terminal domain V060002_03326 PF03807 NADP oxidoreductase coenzyme F420-dependent V060002_03326 PF14748 Pyrroline-5-carboxylate reductase dimerisation V060002_03327 PF02325 V060002_03327 V060002_03328 PF02594 Uncharacterised ACR, YggU family COG1872 V060002_03329 PF14467 Domain of unknown function (DUF4426) V060002_03330 PF01725 Ham1 family V060002_03331 PF04055 Radical SAM superfamily V060002_03331 PF06969 HemN C-terminal domain V060002_03332 PF04960 Glutaminase V060002_03333 PF02390 Putative methyltransferase V060002_03334 PF00633 Helix-hairpin-helix motif V060002_03334 PF00730 HhH-GPD superfamily base excision DNA repair protein V060002_03334 PF14815 NUDIX domain V060002_03335 PF04362 Bacterial Fe(2+) trafficking V060002_03336 PF01464 Transglycosylase SLT domain V060002_03336 PF11873 Domain of unknown function (DUF3393) V060002_03341 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_03341 PF17200 V060002_03341 V060002_03347 PF00226 DnaJ domain V060002_03347 PF05099 Tellurite resistance protein TerB V060002_03348 PF03968 OstA-like protein V060002_03348 PF04453 Organic solvent tolerance protein V060002_03349 PF09312 SurA N-terminal domain V060002_03349 PF13616 PPIC-type PPIASE domain V060002_03350 PF04166 Pyridoxal phosphate biosynthetic protein PdxA V060002_03351 PF00398 Ribosomal RNA adenine dimethylase V060002_03352 PF04379 Protein of unknown function (DUF525) V060002_03353 PF00149 Calcineurin-like phosphoesterase V060002_03354 PF00186 Dihydrofolate reductase V060002_03355 PF12821 V060002_03355 V060002_03356 PF06738 V060002_03356 V060002_03357 PF01018 GTP1/OBG V060002_03357 PF01926 50S ribosome-binding GTPase V060002_03358 PF01016 Ribosomal L27 protein V060002_03359 PF00829 Ribosomal prokaryotic L21 protein V060002_03360 PF00348 Polyprenyl synthetase V060002_03361 PF13520 Amino acid permease V060002_03362 PF13520 Amino acid permease V060002_03363 PF00056 lactate/malate dehydrogenase, NAD binding domain V060002_03363 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain V060002_03364 PF01316 Arginine repressor, DNA binding domain V060002_03364 PF02863 Arginine repressor, C-terminal domain V060002_03365 PF16868 V060002_03365 V060002_03366 PF06808 V060002_03366 V060002_03366 PF11874 V060002_03366 V060002_03367 PF00582 Universal stress protein family V060002_03368 PF09834 V060002_03368 V060002_03370 PF06877 Regulator of ribonuclease activity B V060002_03371 PF02274 Amidinotransferase V060002_03372 PF01523 Putative modulator of DNA gyrase V060002_03373 PF00795 Carbon-nitrogen hydrolase V060002_03374 PF13116 V060002_03374 V060002_03374 PF13502 V060002_03374 V060002_03375 PF00575 S1 RNA binding domain V060002_03375 PF10150 Ribonuclease E/G family V060002_03376 PF02545 Maf-like protein V060002_03377 PF04093 V060002_03377 V060002_03378 PF04085 rod shape-determining protein MreC V060002_03379 PF06723 MreB/Mbl protein V060002_03382 PF07963 Prokaryotic N-terminal methylation motif V060002_03383 PF07963 Prokaryotic N-terminal methylation motif V060002_03384 PF07963 Prokaryotic N-terminal methylation motif V060002_03385 PF07963 Prokaryotic N-terminal methylation motif V060002_03386 PF07963 Prokaryotic N-terminal methylation motif V060002_03388 PF00482 Type II secretion system (T2SS), protein F V060002_03389 PF00437 Type II/IV secretion system protein V060002_03389 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain V060002_03391 PF13401 AAA domain V060002_03392 PF00263 V060002_03392 V060002_03392 PF07655 V060002_03392 V060002_03394 PF04612 Type II secretion system (T2SS), protein M V060002_03396 PF00563 EAL domain V060002_03396 PF00990 GGDEF domain V060002_03396 PF17157 V060002_03396 V060002_03397 PF00436 Single-strand binding protein family V060002_03398 PF00196 Bacterial regulatory proteins, luxR family V060002_03399 PF00483 Nucleotidyl transferase V060002_03400 PF00005 ABC transporter V060002_03401 PF04932 V060002_03401 V060002_03401 PF11846 V060002_03401 V060002_03401 PF15864 V060002_03401 V060002_03402 PF00266 Aminotransferase class-V V060002_03403 PF00696 Amino acid kinase family V060002_03404 PF00809 Pterin binding enzyme V060002_03404 PF02310 B12 binding domain V060002_03404 PF02574 Homocysteine S-methyltransferase V060002_03404 PF02607 B12 binding domain V060002_03404 PF02965 Vitamin B12 dependent methionine synthase, activation domain V060002_03405 PF00999 Sodium/hydrogen exchanger family V060002_03418 PF01507 Phosphoadenosine phosphosulfate reductase family V060002_03419 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V060002_03419 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V060002_03420 PF00175 Oxidoreductase NAD-binding domain V060002_03420 PF00258 Flavodoxin V060002_03420 PF00667 FAD binding domain V060002_03422 PF13505 Outer membrane protein beta-barrel domain V060002_03423 PF09583 V060002_03423 V060002_03424 PF01207 Dihydrouridine synthase (Dus) V060002_03425 PF01475 Ferric uptake regulator family V060002_03426 PF13690 Chemotaxis phosphatase CheX V060002_03427 PF12706 Beta-lactamase superfamily domain V060002_03428 PF00342 Phosphoglucose isomerase V060002_03429 PF01894 Uncharacterised protein family UPF0047 V060002_03430 PF00842 Alanine racemase, C-terminal domain V060002_03430 PF01168 Alanine racemase, N-terminal domain V060002_03431 PF00772 DnaB-like helicase N terminal domain V060002_03431 PF03796 DnaB-like helicase C terminal domain V060002_03432 PF04338 Protein of unknown function, DUF481 V060002_03433 PF01281 Ribosomal protein L9, N-terminal domain V060002_03433 PF03948 Ribosomal protein L9, C-terminal domain V060002_03434 PF01084 Ribosomal protein S18 V060002_03435 PF00436 Single-strand binding protein family V060002_03436 PF01250 Ribosomal protein S6 V060002_03437 PF00210 Ferritin-like domain V060002_03438 PF04324 BFD-like [2Fe-2S] binding domain V060002_03439 PF00009 Elongation factor Tu GTP binding domain V060002_03439 PF03143 Elongation factor Tu C-terminal domain V060002_03439 PF03144 Elongation factor Tu domain 2 V060002_03440 PF00009 Elongation factor Tu GTP binding domain V060002_03440 PF00679 Elongation factor G C-terminus V060002_03440 PF03144 Elongation factor Tu domain 2 V060002_03440 PF03764 Elongation factor G, domain IV V060002_03440 PF14492 Elongation Factor G, domain II V060002_03441 PF00177 Ribosomal protein S7p/S5e V060002_03442 PF00164 Ribosomal protein S12/S23 V060002_03443 PF04077 DsrH like protein V060002_03444 PF02635 DsrE/DsrF-like family V060002_03445 PF02635 DsrE/DsrF-like family V060002_03446 PF08348 V060002_03446 V060002_03446 PF13309 V060002_03446 V060002_03447 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V060002_03447 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V060002_03448 PF00400 WD domain, G-beta repeat V060002_03449 PF04102 SlyX V060002_03450 PF09838 V060002_03450 V060002_03451 PF01145 SPFH domain / Band 7 family V060002_03452 PF01145 SPFH domain / Band 7 family V060002_03452 PF12221 V060002_03452 V060002_03453 PF01926 50S ribosome-binding GTPase V060002_03453 PF13167 V060002_03453 V060002_03453 PF16360 V060002_03453 V060002_03454 PF17209 V060002_03454 V060002_03455 PF01715 IPP transferase V060002_03456 PF01119 DNA mismatch repair protein, C-terminal domain V060002_03456 PF08676 MutL C terminal dimerisation domain V060002_03456 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_03457 PF01476 LysM domain V060002_03457 PF01520 N-acetylmuramoyl-L-alanine amidase V060002_03457 PF11741 AMIN domain V060002_03458 PF02367 Uncharacterised P-loop hydrolase UPF0079 V060002_03459 PF08331 V060002_03459 V060002_03465 PF00929 Exonuclease V060002_03466 PF03193 Protein of unknown function, DUF258 V060002_03467 PF02666 V060002_03467 V060002_03468 PF00939 Sodium:sulfate symporter transmembrane region V060002_03469 PF00892 EamA-like transporter family V060002_03470 PF01676 Metalloenzyme superfamily V060002_03470 PF06415 BPG-independent PGAM N-terminus (iPGM_N) V060002_03471 PF01551 Peptidase family M23 V060002_03473 PF00440 Bacterial regulatory proteins, tetR family V060002_03473 PF13972 Bacterial transcriptional repressor V060002_03474 PF01208 Uroporphyrinogen decarboxylase (URO-D) V060002_03475 PF00293 NUDIX domain V060002_03475 PF09297 NADH pyrophosphatase zinc ribbon domain V060002_03476 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ V060002_03477 PF00623 RNA polymerase Rpb1, domain 2 V060002_03477 PF04983 RNA polymerase Rpb1, domain 3 V060002_03477 PF04997 RNA polymerase Rpb1, domain 1 V060002_03477 PF04998 RNA polymerase Rpb1, domain 5 V060002_03477 PF05000 RNA polymerase Rpb1, domain 4 V060002_03478 PF00562 RNA polymerase Rpb2, domain 6 V060002_03478 PF04560 RNA polymerase Rpb2, domain 7 V060002_03478 PF04561 RNA polymerase Rpb2, domain 2 V060002_03478 PF04563 RNA polymerase beta subunit V060002_03478 PF04565 RNA polymerase Rpb2, domain 3 V060002_03478 PF10385 RNA polymerase beta subunit external 1 domain V060002_03479 PF00542 Ribosomal protein L7/L12 C-terminal domain V060002_03479 PF16320 V060002_03479 V060002_03480 PF00466 Ribosomal protein L10 V060002_03481 PF00687 Ribosomal protein L1p/L10e family V060002_03482 PF00298 Ribosomal protein L11, RNA binding domain V060002_03482 PF03946 Ribosomal protein L11, N-terminal domain V060002_03483 PF00467 KOW motif V060002_03483 PF02357 Transcription termination factor nusG V060002_03484 PF00584 SecE/Sec61-gamma subunits of protein translocation complex V060002_03485 PF00009 Elongation factor Tu GTP binding domain V060002_03485 PF03143 Elongation factor Tu C-terminal domain V060002_03485 PF03144 Elongation factor Tu domain 2 V060002_03490 PF00485 Phosphoribulokinase / Uridine kinase family V060002_03491 PF02237 Biotin protein ligase C terminal domain V060002_03491 PF03099 Biotin/lipoate A/B protein ligase family V060002_03491 PF08279 HTH domain V060002_03492 PF01565 FAD binding domain V060002_03492 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain V060002_03493 PF13508 Acetyltransferase (GNAT) domain V060002_03494 PF13091 PLD-like domain V060002_03501 PF00175 Oxidoreductase NAD-binding domain V060002_03501 PF00970 Oxidoreductase FAD-binding domain V060002_03502 PF00111 2Fe-2S iron-sulfur cluster binding domain V060002_03503 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase V060002_03505 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V060002_03505 PF07497 Rho termination factor, RNA-binding domain V060002_03505 PF07498 Rho termination factor, N-terminal domain V060002_03506 PF00085 Thioredoxin V060002_03507 PF00270 DEAD/DEAH box helicase V060002_03507 PF00271 Helicase conserved C-terminal domain V060002_03508 PF02541 Ppx/GppA phosphatase family V060002_03509 PF00072 Response regulator receiver domain V060002_03509 PF00512 His Kinase A (phospho-acceptor) domain V060002_03509 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V060002_03509 PF12860 V060002_03509 V060002_03510 PF12832 MFS_1 like family V060002_03511 PF00027 Cyclic nucleotide-binding domain V060002_03511 PF03445 V060002_03511 V060002_03511 PF10335 V060002_03511 V060002_03512 PF00929 Exonuclease V060002_03513 PF00501 AMP-binding enzyme V060002_03513 PF13193 AMP-binding enzyme C-terminal domain V060002_03513 PF16177 V060002_03513 V060002_03514 PF01220 Dehydroquinase class II V060002_03515 PF00364 Biotin-requiring enzyme V060002_03516 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain V060002_03516 PF02785 Biotin carboxylase C-terminal domain V060002_03516 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V060002_03517 PF06325 Ribosomal protein L11 methyltransferase (PrmA) V060002_03518 PF01207 Dihydrouridine synthase (Dus) V060002_03519 PF02954 Bacterial regulatory protein, Fis family V060002_03520 PF00356 Bacterial regulatory proteins, lacI family V060002_03520 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V060002_03521 PF00920 Dehydratase family V060002_03522 PF01202 Shikimate kinase V060002_03523 PF02447 V060002_03523 V060002_03524 PF01081 KDPG and KHG aldolase V060002_03525 PF00593 TonB dependent receptor V060002_03525 PF07715 TonB-dependent Receptor Plug Domain V060002_03526 PF00593 TonB dependent receptor V060002_03527 PF16357 V060002_03527 V060002_03528 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_03528 PF00672 HAMP domain V060002_03528 PF17200 V060002_03528 V060002_03529 PF01276 Orn/Lys/Arg decarboxylase, major domain V060002_03529 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain V060002_03530 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V060002_03532 PF12844 Helix-turn-helix domain V060002_03535 PF01734 Patatin-like phospholipase V060002_03537 PF00899 ThiF family V060002_03537 PF14461 Prokaryotic E2 family B V060002_03538 PF14464 Prokaryotic homologs of the JAB domain V060002_03542 PF00589 Phage integrase family V060002_03543 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V060002_03543 PF07992 Pyridine nucleotide-disulphide oxidoreductase V060002_03544 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ V060002_03545 PF01432 Peptidase family M3 V060002_03546 PF00580 UvrD/REP helicase N-terminal domain V060002_03546 PF13361 UvrD-like helicase C-terminal domain V060002_03547 PF01810 V060002_03547 V060002_03548 PF02311 AraC-like ligand binding domain V060002_03548 PF12833 Helix-turn-helix domain V060002_03549 PF01019 Gamma-glutamyltranspeptidase V060002_03550 PF00892 EamA-like transporter family V060002_03551 PF00270 DEAD/DEAH box helicase V060002_03551 PF00271 Helicase conserved C-terminal domain V060002_03551 PF00570 HRDC domain V060002_03551 PF09382 RQC domain V060002_03551 PF16124 V060002_03551 V060002_03552 PF12305 V060002_03552 V060002_03554 PF00005 ABC transporter V060002_03554 PF00664 ABC transporter transmembrane region V060002_03555 PF00593 TonB dependent receptor V060002_03555 PF07715 TonB-dependent Receptor Plug Domain V060002_03556 PF00005 ABC transporter V060002_03557 PF01497 Periplasmic binding protein V060002_03558 PF01032 FecCD transport family V060002_03559 PF01380 SIS domain V060002_03559 PF01418 Helix-turn-helix domain, rpiR family V060002_03560 PF13580 SIS domain V060002_03561 PF00367 phosphotransferase system, EIIB V060002_03561 PF02378 Phosphotransferase system, EIIC V060002_03562 PF03350 V060002_03562 V060002_03563 PF03755 V060002_03563 V060002_03563 PF08340 V060002_03563 V060002_03564 PF01138 3' exoribonuclease family, domain 1 V060002_03564 PF03725 3' exoribonuclease family, domain 2 V060002_03565 PF00156 Phosphoribosyl transferase domain V060002_03566 PF03279 V060002_03566 V060002_03567 PF03279 V060002_03567 V060002_03568 PF00440 Bacterial regulatory proteins, tetR family V060002_03569 PF02441 Flavoprotein V060002_03569 PF04127 DNA / pantothenate metabolism flavoprotein V060002_03570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V060002_03570 PF00672 HAMP domain V060002_03570 PF17200 V060002_03570 V060002_03571 PF04002 RadC-like JAB domain V060002_03572 PF00830 Ribosomal L28 family V060002_03573 PF00471 Ribosomal protein L33 V060002_03575 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain V060002_03575 PF06827 Zinc finger found in FPG and IleRS V060002_03575 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain V060002_03576 PF01467 Cytidylyltransferase V060002_03577 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V060002_03578 PF00535 Glycosyl transferase family 2 V060002_03579 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V060002_03580 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family V060002_03581 PF07507 V060002_03581 V060002_03582 PF07507 V060002_03582 V060002_03585 PF08282 haloacid dehalogenase-like hydrolase V060002_03586 PF00534 Glycosyl transferases group 1 V060002_03586 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) V060002_03587 PF04488 Glycosyltransferase sugar-binding region containing DXD motif V060002_03588 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V060002_03589 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V060002_03590 PF04932 V060002_03590 V060002_03591 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_03592 PF01522 Polysaccharide deacetylase V060002_03592 PF13439 Glycosyltransferase Family 4 V060002_03593 PF01370 NAD dependent epimerase/dehydratase family V060002_03594 PF00483 Nucleotidyl transferase V060002_03594 PF01050 Mannose-6-phosphate isomerase V060002_03595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V060002_03595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V060002_03595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V060002_03595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V060002_03596 PF16363 V060002_03596 V060002_03597 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V060002_03598 PF00534 Glycosyl transferases group 1 V060002_03599 PF01061 V060002_03599 V060002_03600 PF00005 ABC transporter V060002_03601 PF00550 Phosphopantetheine attachment site V060002_03602 PF00501 AMP-binding enzyme V060002_03602 PF13193 AMP-binding enzyme C-terminal domain V060002_03603 PF00465 Iron-containing alcohol dehydrogenase V060002_03604 PF04443 V060002_03604 V060002_03604 PF05893 Acyl-CoA reductase (LuxC) V060002_03605 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_03606 PF13808 V060002_03606 V060002_03607 PF01609 Transposase DDE domain V060002_03608 PF05575 V060002_03608 V060002_03609 PF00534 Glycosyl transferases group 1 V060002_03609 PF13439 Glycosyltransferase Family 4 V060002_03610 PF02719 Polysaccharide biosynthesis protein V060002_03611 PF01370 NAD dependent epimerase/dehydratase family V060002_03612 PF02397 V060002_03612 V060002_03613 PF00753 Metallo-beta-lactamase superfamily V060002_03613 PF07521 RNA-metabolising metallo-beta-lactamase V060002_03613 PF10996 Beta-Casp domain V060002_03614 PF00924 Mechanosensitive ion channel V060002_03615 PF03167 Uracil DNA glycosylase superfamily V060002_03616 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V060002_03617 PF04222 Protein of unknown function (DUF416) V060002_03618 PF01238 Phosphomannose isomerase type I V060002_03619 PF00480 ROK family V060002_03620 PF00571 CBS domain V060002_03620 PF01595 V060002_03620 V060002_03621 PF00216 Bacterial DNA-binding protein V060002_03622 PF07356 V060002_03622 V060002_03623 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain V060002_03623 PF02843 Phosphoribosylglycinamide synthetase, C domain V060002_03623 PF02844 Phosphoribosylglycinamide synthetase, N domain V060002_03624 PF01808 AICARFT/IMPCHase bienzyme V060002_03624 PF02142 MGS-like domain V060002_03625 PF13411 MerR HTH family regulatory protein V060002_03626 PF00486 Transcriptional regulatory protein, C terminal V060002_03627 PF13520 Amino acid permease V060002_03628 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain V060002_03629 PF00589 Phage integrase family V060002_03633 PF14464 Prokaryotic homologs of the JAB domain V060002_03634 PF00899 ThiF family V060002_03634 PF14461 Prokaryotic E2 family B V060002_03636 PF01734 Patatin-like phospholipase V060002_03639 PF12844 Helix-turn-helix domain V060002_03641 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V060002_03642 PF05036 Sporulation related domain V060002_03643 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03643 PF12911 V060002_03643 V060002_03644 PF00528 Binding-protein-dependent transport system inner membrane component V060002_03645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V060002_03646 PF00005 ABC transporter V060002_03646 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V060002_03652 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V060002_03653 PF00580 UvrD/REP helicase N-terminal domain V060002_03653 PF13361 UvrD-like helicase C-terminal domain V060002_03654 PF00440 Bacterial regulatory proteins, tetR family V060002_03655 PF16576 V060002_03655 V060002_03656 PF00873 AcrB/AcrD/AcrF family V060002_03657 PF04380 V060002_03657 V060002_03658 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain V060002_03658 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain V060002_03659 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03659 PF03466 LysR substrate binding domain V060002_03667 PF12724 Flavodoxin domain V060002_03668 PF02386 Cation transport protein V060002_03669 PF01205 Uncharacterized protein family UPF0029 V060002_03669 PF09186 Domain of unknown function (DUF1949) V060002_03670 PF00378 Enoyl-CoA hydratase/isomerase family V060002_03670 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V060002_03670 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V060002_03671 PF00108 Thiolase, N-terminal domain V060002_03671 PF02803 Thiolase, C-terminal domain V060002_03672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V060002_03672 PF03466 LysR substrate binding domain V060002_03673 PF07690 Major Facilitator Superfamily V060002_03674 PF00132 Bacterial transferase hexapeptide (six repeats) V060002_03674 PF12804 MobA-like NTP transferase domain V060002_03675 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain V060002_03675 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain V060002_03676 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V060002_03676 PF02874 ATP synthase alpha/beta family, beta-barrel domain V060002_03677 PF00231 ATP synthase V060002_03678 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V060002_03678 PF00306 ATP synthase alpha/beta chain, C terminal domain V060002_03678 PF02874 ATP synthase alpha/beta family, beta-barrel domain V060002_03679 PF00213 ATP synthase delta (OSCP) subunit V060002_03680 PF00430 ATP synthase B/B' CF(0) V060002_03681 PF00137 ATP synthase subunit C V060002_03682 PF00119 ATP synthase A chain V060002_03683 PF03899 V060002_03683 V060002_03684 PF02195 ParB-like nuclease domain V060002_03685 PF13614 AAA domain V060002_03686 PF02527 rRNA small subunit methyltransferase G V060002_03687 PF01134 Glucose inhibited division protein A V060002_03687 PF13932 GidA associated domain 3