V060002_00034 SM00382 ATPases associated with a variety of cellular activities V060002_00036 SM00062 Bacterial periplasmic substrate-binding proteins V060002_00037 SM00382 ATPases associated with a variety of cellular activities V060002_00037 SM00760 Bacterial dnaA protein helix-turn-helix domain V060002_00038 SM00480 DNA polymerase III beta subunit V060002_00040 SM00387 Histidine kinase-like ATPases V060002_00040 SM00433 TopoisomeraseII V060002_00051 SM00829 Enoylreductase V060002_00057 SM00382 ATPases associated with a variety of cellular activities V060002_00058 SM00563 Phosphate acyltransferases V060002_00071 SM00257 Lysin motif V060002_00076 SM01001 AIR carboxylase V060002_00094 SM00876 Biotin and Thiamin Synthesis associated domain V060002_00099 SM00344 helix_turn_helix ASNC type V060002_00100 SM00052 Putative diguanylate phosphodiesterase V060002_00100 SM00091 PAS domain V060002_00100 SM00267 diguanylate cyclase V060002_00120 SM00563 Phosphate acyltransferases V060002_00124 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) V060002_00124 SM00091 PAS domain V060002_00124 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_00126 SM00450 Rhodanese Homology Domain V060002_00128 SM01004 Delta-aminolevulinic acid dehydratase V060002_00130 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs V060002_00130 SM00474 3'-5' exonuclease V060002_00130 SM00475 5'-3' exonuclease V060002_00130 SM00482 DNA polymerase A domain V060002_00136 SM00729 Elongator protein 3, MiaB family, Radical SAM V060002_00142 SM01219 V060002_00142 V060002_00148 SM00052 Putative diguanylate phosphodiesterase V060002_00148 SM00267 diguanylate cyclase V060002_00148 SM00897 FIST N domain V060002_00148 SM01204 V060002_00148 V060002_00149 SM01144 V060002_00149 V060002_00161 SM00382 ATPases associated with a variety of cellular activities V060002_00161 SM00962 SRP54-type protein, GTPase domain V060002_00161 SM00963 SRP54-type protein, helical bundle domain V060002_00162 SM00382 ATPases associated with a variety of cellular activities V060002_00172 SM00360 RNA recognition motif V060002_00186 SM00052 Putative diguanylate phosphodiesterase V060002_00186 SM00267 diguanylate cyclase V060002_00187 SM00382 ATPases associated with a variety of cellular activities V060002_00187 SM00448 cheY-homologous receiver domain V060002_00188 SM00091 PAS domain V060002_00188 SM00387 Histidine kinase-like ATPases V060002_00188 SM00388 His Kinase A (phosphoacceptor) domain V060002_00190 SM01230 V060002_00190 V060002_00200 SM00363 S4 RNA-binding domain V060002_00203 SM00382 ATPases associated with a variety of cellular activities V060002_00219 SM00316 Ribosomal protein S1-like RNA-binding domain V060002_00219 SM00732 Likely ribonuclease with RNase H fold. V060002_00221 SM00448 cheY-homologous receiver domain V060002_00221 SM00862 Transcriptional regulatory protein, C terminal V060002_00222 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_00222 SM00387 Histidine kinase-like ATPases V060002_00222 SM00388 His Kinase A (phosphoacceptor) domain V060002_00224 SM00487 DEAD-like helicases superfamily V060002_00224 SM00490 helicase superfamily c-terminal domain V060002_00225 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. V060002_00225 SM00954 Region found in RelA / SpoT proteins V060002_00226 SM01409 V060002_00226 V060002_00227 SM00072 Guanylate kinase homologues. V060002_00231 SM01091 Transporter associated domain V060002_00232 SM00421 helix_turn_helix, Lux Regulon V060002_00232 SM00448 cheY-homologous receiver domain V060002_00239 SM00267 diguanylate cyclase V060002_00243 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_00243 SM00387 Histidine kinase-like ATPases V060002_00243 SM00388 His Kinase A (phosphoacceptor) domain V060002_00244 SM00448 cheY-homologous receiver domain V060002_00244 SM00862 Transcriptional regulatory protein, C terminal V060002_00253 SM00919 Malic enzyme, NAD binding domain V060002_00253 SM01274 V060002_00253 V060002_00255 SM00487 DEAD-like helicases superfamily V060002_00255 SM00490 helicase superfamily c-terminal domain V060002_00256 SM00354 helix_turn _helix lactose operon repressor V060002_00259 SM00382 ATPases associated with a variety of cellular activities V060002_00259 SM01086 C-terminal, D2-small domain, of ClpB protein V060002_00268 SM00883 Chaperonin 10 Kd subunit V060002_00272 SM00841 Elongation factor P, C-terminal V060002_00272 SM01185 V060002_00272 V060002_00278 SM00450 Rhodanese Homology Domain V060002_00281 SM00971 Serine acetyltransferase, N-terminal V060002_00285 SM00859 Semialdehyde dehydrogenase, NAD binding domain V060002_00298 SM00965 Secretin and TonB N terminus short domain V060002_00308 SM00729 Elongator protein 3, MiaB family, Radical SAM V060002_00313 SM01150 V060002_00313 V060002_00314 SM00100 Cyclic nucleotide-monophosphate binding domain V060002_00314 SM00419 helix_turn_helix, cAMP Regulatory protein V060002_00319 SM00382 ATPases associated with a variety of cellular activities V060002_00325 SM00788 Adenylosuccinate synthetase V060002_00326 SM00671 Sel1-like repeats. V060002_00328 SM00316 Ribosomal protein S1-like RNA-binding domain V060002_00328 SM00357 Cold shock protein domain V060002_00328 SM00955 V060002_00328 V060002_00329 SM00967 RNA 2'-O ribose methyltransferase substrate binding V060002_00330 SM01403 V060002_00330 V060002_00334 SM01382 V060002_00334 V060002_00334 SM01383 V060002_00334 V060002_00337 SM00322 K homology RNA-binding domain V060002_00341 SM01374 V060002_00341 V060002_00342 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. V060002_00355 SM00363 S4 RNA-binding domain V060002_00355 SM01390 V060002_00355 V060002_00356 SM00662 RNA polymerases D V060002_00363 SM00487 DEAD-like helicases superfamily V060002_00363 SM00490 helicase superfamily c-terminal domain V060002_00373 SM00382 ATPases associated with a variety of cellular activities V060002_00387 SM00382 ATPases associated with a variety of cellular activities V060002_00390 SM00924 MgtE intracellular N domain V060002_00396 SM00382 ATPases associated with a variety of cellular activities V060002_00400 SM00116 Domain in cystathionine beta-synthase and other proteins. V060002_00402 SM00382 ATPases associated with a variety of cellular activities V060002_00409 SM00563 Phosphate acyltransferases V060002_00414 SM00670 Large family of predicted nucleotide-binding domains V060002_00415 SM00487 DEAD-like helicases superfamily V060002_00415 SM00490 helicase superfamily c-terminal domain V060002_00425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. V060002_00436 SM01329 V060002_00436 V060002_00437 SM00917 LeuA allosteric (dimerisation) domain V060002_00439 SM00014 Acid phosphatase homologues V060002_00463 SM00358 Double-stranded RNA binding motif V060002_00463 SM00535 Ribonuclease III family V060002_00470 SM00267 diguanylate cyclase V060002_00471 SM00073 Histidine Phosphotransfer domain V060002_00471 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_00471 SM00387 Histidine kinase-like ATPases V060002_00471 SM00388 His Kinase A (phosphoacceptor) domain V060002_00471 SM00448 cheY-homologous receiver domain V060002_00473 SM00954 Region found in RelA / SpoT proteins V060002_00476 SM01192 V060002_00476 V060002_00476 SM01193 V060002_00476 V060002_00478 SM00382 ATPases associated with a variety of cellular activities V060002_00480 SM00287 Bacterial SH3 domain homologues V060002_00483 SM00880 V060002_00483 V060002_00483 SM01118 V060002_00483 V060002_00485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_00485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_00495 SM01192 V060002_00495 V060002_00495 SM01193 V060002_00495 V060002_00497 SM00382 ATPases associated with a variety of cellular activities V060002_00499 SM00287 Bacterial SH3 domain homologues V060002_00502 SM00880 V060002_00502 V060002_00502 SM01118 V060002_00502 V060002_00504 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_00504 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_00512 SM00387 Histidine kinase-like ATPases V060002_00512 SM00433 TopoisomeraseII V060002_00513 SM00434 DNA Topoisomerase IV V060002_00522 SM00644 V060002_00522 V060002_00528 SM00345 helix_turn_helix gluconate operon transcriptional repressor V060002_00528 SM00895 V060002_00528 V060002_00543 SM00842 Cell division protein FtsA V060002_00544 SM00864 Tubulin/FtsZ family, GTPase domain V060002_00544 SM00865 Tubulin/FtsZ family, C-terminal domain V060002_00547 SM00957 SecA DEAD-like domain V060002_00547 SM00958 SecA preprotein cross-linking domain V060002_00550 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain V060002_00551 SM00851 MGS-like domain V060002_00551 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain V060002_00554 SM00507 HNH nucleases V060002_00555 SM00382 ATPases associated with a variety of cellular activities V060002_00568 SM00729 Elongator protein 3, MiaB family, Radical SAM V060002_00569 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) V060002_00569 SM00091 PAS domain V060002_00569 SM00267 diguanylate cyclase V060002_00570 SM00073 Histidine Phosphotransfer domain V060002_00570 SM00091 PAS domain V060002_00570 SM00387 Histidine kinase-like ATPases V060002_00570 SM00388 His Kinase A (phosphoacceptor) domain V060002_00570 SM00448 cheY-homologous receiver domain V060002_00571 SM00448 cheY-homologous receiver domain V060002_00571 SM00862 Transcriptional regulatory protein, C terminal V060002_00579 SM00518 AP endonuclease family 2 V060002_00580 SM00986 Uracil DNA glycosylase superfamily V060002_00580 SM00987 UreE urease accessory protein, C-terminal domain V060002_00588 SM01133 V060002_00588 V060002_00589 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain V060002_00595 SM00382 ATPases associated with a variety of cellular activities V060002_00596 SM00838 Elongation factor G C-terminus V060002_00596 SM00889 Elongation factor G, domain IV V060002_00600 SM01038 Beta galactosidase small chain V060002_00601 SM00354 helix_turn _helix lactose operon repressor V060002_00619 SM00925 MltA specific insert domain V060002_00626 SM00464 Found in ATP-dependent protease La (LON) V060002_00636 SM00900 V060002_00636 V060002_00645 SM00267 diguanylate cyclase V060002_00655 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase V060002_00666 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. V060002_00675 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. V060002_00677 SM00935 Outer membrane protein (OmpH-like) V060002_00683 SM00481 DNA polymerase alpha chain like domain V060002_00685 SM00977 TilS substrate C-terminal domain V060002_00688 SM00938 Nitrogen regulatory protein P-II V060002_00690 SM00257 Lysin motif V060002_00691 SM00849 Metallo-beta-lactamase superfamily V060002_00694 SM00479 V060002_00694 V060002_00703 SM00267 diguanylate cyclase V060002_00704 SM00363 S4 RNA-binding domain V060002_00705 SM00463 Small MutS-related domain V060002_00709 SM01081 Putative carbohydrate binding domain V060002_00717 SM00823 Phosphopantetheine attachment site V060002_00723 SM00858 V060002_00723 V060002_00724 SM00260 Two component signalling adaptor domain V060002_00724 SM00448 cheY-homologous receiver domain V060002_00725 SM00138 Methyltransferase, chemotaxis proteins V060002_00734 SM00047 Lysozyme subfamily 2 V060002_00757 SM01400 V060002_00757 V060002_00761 SM00937 V060002_00761 V060002_00773 SM00028 Tetratricopeptide repeats V060002_00776 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_00776 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_00779 SM01130 V060002_00779 V060002_00796 SM00382 ATPases associated with a variety of cellular activities V060002_00797 SM00091 PAS domain V060002_00797 SM00387 Histidine kinase-like ATPases V060002_00797 SM00388 His Kinase A (phosphoacceptor) domain V060002_00798 SM00382 ATPases associated with a variety of cellular activities V060002_00798 SM00448 cheY-homologous receiver domain V060002_00803 SM00382 ATPases associated with a variety of cellular activities V060002_00814 SM00463 Small MutS-related domain V060002_00822 SM00825 Beta-ketoacyl synthase V060002_00824 SM00859 Semialdehyde dehydrogenase, NAD binding domain V060002_00842 SM00861 Transketolase, pyrimidine binding domain V060002_00845 SM00881 CoA binding domain V060002_00847 SM00382 ATPases associated with a variety of cellular activities V060002_00849 SM00342 helix_turn_helix, arabinose operon control protein V060002_00850 SM00899 V060002_00850 V060002_00854 SM00836 DALR anticodon binding domain V060002_00854 SM01016 Arginyl tRNA synthetase N terminal dom V060002_00857 SM00855 Phosphoglycerate mutase family V060002_00859 SM00382 ATPases associated with a variety of cellular activities V060002_00859 SM00962 SRP54-type protein, GTPase domain V060002_00862 SM00448 cheY-homologous receiver domain V060002_00864 SM00073 Histidine Phosphotransfer domain V060002_00864 SM00260 Two component signalling adaptor domain V060002_00864 SM00387 Histidine kinase-like ATPases V060002_00864 SM01231 V060002_00864 V060002_00865 SM00448 cheY-homologous receiver domain V060002_00867 SM00260 Two component signalling adaptor domain V060002_00868 SM00260 Two component signalling adaptor domain V060002_00870 SM00382 ATPases associated with a variety of cellular activities V060002_00884 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain V060002_00884 SM00437 Bacterial DNA topoisomerase I DNA-binding domain V060002_00884 SM00493 V060002_00884 V060002_00891 SM00073 Histidine Phosphotransfer domain V060002_00893 SM00859 Semialdehyde dehydrogenase, NAD binding domain V060002_00898 SM00316 Ribosomal protein S1-like RNA-binding domain V060002_00899 SM00363 S4 RNA-binding domain V060002_00905 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. V060002_00906 SM00822 V060002_00906 V060002_00908 SM00825 Beta-ketoacyl synthase V060002_00922 SM00260 Two component signalling adaptor domain V060002_00922 SM00448 cheY-homologous receiver domain V060002_00928 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V060002_00932 SM00870 V060002_00932 V060002_00937 SM00487 DEAD-like helicases superfamily V060002_00937 SM00491 V060002_00937 V060002_00943 SM00474 3'-5' exonuclease V060002_00946 SM01144 V060002_00946 V060002_00947 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. V060002_00948 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. V060002_00954 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain V060002_00957 SM00530 Helix-turn-helix XRE-family like proteins V060002_00958 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_00958 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_00959 SM00563 Phosphate acyltransferases V060002_00962 SM00978 V060002_00962 V060002_00972 SM00495 Chitin-binding domain type 3 V060002_00972 SM00636 V060002_00972 V060002_00986 SM00563 Phosphate acyltransferases V060002_00989 SM00052 Putative diguanylate phosphodiesterase V060002_00989 SM00267 diguanylate cyclase V060002_00996 SM00382 ATPases associated with a variety of cellular activities V060002_00996 SM00448 cheY-homologous receiver domain V060002_00997 SM00387 Histidine kinase-like ATPases V060002_00997 SM00388 His Kinase A (phosphoacceptor) domain V060002_01000 SM00382 ATPases associated with a variety of cellular activities V060002_01000 SM00994 ClpX C4-type zinc finger V060002_01000 SM01086 C-terminal, D2-small domain, of ClpB protein V060002_01001 SM00382 ATPases associated with a variety of cellular activities V060002_01001 SM00464 Found in ATP-dependent protease La (LON) V060002_01002 SM00411 bacterial (prokaryotic) histone like domain V060002_01004 SM00278 Helix-hairpin-helix DNA-binding motif class 1 V060002_01006 SM00316 Ribosomal protein S1-like RNA-binding domain V060002_01007 SM00411 bacterial (prokaryotic) histone like domain V060002_01009 SM00028 Tetratricopeptide repeats V060002_01010 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family V060002_01015 SM01002 Alanine dehydrogenase/PNT, C-terminal domain V060002_01015 SM01003 Alanine dehydrogenase/PNT, N-terminal domain V060002_01016 SM00344 helix_turn_helix ASNC type V060002_01017 SM00843 V060002_01017 V060002_01020 SM00345 helix_turn_helix gluconate operon transcriptional repressor V060002_01022 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01022 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01033 SM00487 DEAD-like helicases superfamily V060002_01033 SM00490 helicase superfamily c-terminal domain V060002_01033 SM00982 V060002_01033 V060002_01033 SM01058 CarD-like/TRCF domain V060002_01036 SM00382 ATPases associated with a variety of cellular activities V060002_01039 SM00849 Metallo-beta-lactamase superfamily V060002_01040 SM00382 ATPases associated with a variety of cellular activities V060002_01046 SM00763 PrkA AAA domain V060002_01050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01055 SM00382 ATPases associated with a variety of cellular activities V060002_01056 SM00062 Bacterial periplasmic substrate-binding proteins V060002_01056 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. V060002_01060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01064 SM00491 V060002_01064 V060002_01068 SM00052 Putative diguanylate phosphodiesterase V060002_01071 SM00840 V060002_01071 V060002_01073 SM00278 Helix-hairpin-helix DNA-binding motif class 1 V060002_01074 SM00382 ATPases associated with a variety of cellular activities V060002_01088 SM00387 Histidine kinase-like ATPases V060002_01088 SM00388 His Kinase A (phosphoacceptor) domain V060002_01088 SM00448 cheY-homologous receiver domain V060002_01092 SM00342 helix_turn_helix, arabinose operon control protein V060002_01099 SM00382 ATPases associated with a variety of cellular activities V060002_01130 SM00271 DnaJ molecular chaperone homology domain V060002_01132 SM00052 Putative diguanylate phosphodiesterase V060002_01132 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. V060002_01132 SM00267 diguanylate cyclase V060002_01135 SM00382 ATPases associated with a variety of cellular activities V060002_01137 SM00984 UDP binding domain V060002_01139 SM00797 Allophanate hydrolase subunit 2 V060002_01140 SM00796 Allophanate hydrolase subunit 1 V060002_01143 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01143 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01147 SM00487 DEAD-like helicases superfamily V060002_01147 SM00490 helicase superfamily c-terminal domain V060002_01152 SM00382 ATPases associated with a variety of cellular activities V060002_01153 SM00327 von Willebrand factor (vWF) type A domain V060002_01155 SM00382 ATPases associated with a variety of cellular activities V060002_01156 SM00062 Bacterial periplasmic substrate-binding proteins V060002_01156 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. V060002_01180 SM00387 Histidine kinase-like ATPases V060002_01180 SM00388 His Kinase A (phosphoacceptor) domain V060002_01180 SM00448 cheY-homologous receiver domain V060002_01191 SM00382 ATPases associated with a variety of cellular activities V060002_01195 SM00989 V060002_01195 V060002_01196 SM00387 Histidine kinase-like ATPases V060002_01203 SM00851 MGS-like domain V060002_01205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01205 SM00387 Histidine kinase-like ATPases V060002_01205 SM00388 His Kinase A (phosphoacceptor) domain V060002_01205 SM00448 cheY-homologous receiver domain V060002_01210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01210 SM00387 Histidine kinase-like ATPases V060002_01210 SM00388 His Kinase A (phosphoacceptor) domain V060002_01211 SM00448 cheY-homologous receiver domain V060002_01214 SM00495 Chitin-binding domain type 3 V060002_01214 SM00636 V060002_01214 V060002_01216 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) V060002_01216 SM00267 diguanylate cyclase V060002_01221 SM00822 V060002_01221 V060002_01225 SM00382 ATPases associated with a variety of cellular activities V060002_01229 SM00387 Histidine kinase-like ATPases V060002_01230 SM00421 helix_turn_helix, Lux Regulon V060002_01230 SM00448 cheY-homologous receiver domain V060002_01231 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. V060002_01235 SM00926 Molybdopterin oxidoreductase Fe4S4 domain V060002_01238 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01238 SM00387 Histidine kinase-like ATPases V060002_01239 SM00421 helix_turn_helix, Lux Regulon V060002_01239 SM00448 cheY-homologous receiver domain V060002_01240 SM00354 helix_turn _helix lactose operon repressor V060002_01247 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01247 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01251 SM00091 PAS domain V060002_01251 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01254 SM00640 Glycosyl hydrolases family 32 V060002_01255 SM00354 helix_turn _helix lactose operon repressor V060002_01263 SM00563 Phosphate acyltransferases V060002_01265 SM00450 Rhodanese Homology Domain V060002_01267 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor V060002_01284 SM00861 Transketolase, pyrimidine binding domain V060002_01287 SM00450 Rhodanese Homology Domain V060002_01290 SM00852 Probable molybdopterin binding domain V060002_01303 SM00382 ATPases associated with a variety of cellular activities V060002_01305 SM00345 helix_turn_helix gluconate operon transcriptional repressor V060002_01305 SM00866 V060002_01305 V060002_01315 SM00382 ATPases associated with a variety of cellular activities V060002_01328 SM00881 CoA binding domain V060002_01342 SM00530 Helix-turn-helix XRE-family like proteins V060002_01352 SM00530 Helix-turn-helix XRE-family like proteins V060002_01356 SM00448 cheY-homologous receiver domain V060002_01356 SM00862 Transcriptional regulatory protein, C terminal V060002_01357 SM00387 Histidine kinase-like ATPases V060002_01357 SM00388 His Kinase A (phosphoacceptor) domain V060002_01359 SM01002 Alanine dehydrogenase/PNT, C-terminal domain V060002_01359 SM01003 Alanine dehydrogenase/PNT, N-terminal domain V060002_01362 SM00267 diguanylate cyclase V060002_01366 SM00062 Bacterial periplasmic substrate-binding proteins V060002_01366 SM00267 diguanylate cyclase V060002_01372 SM00782 PhnA Zinc-Ribbon V060002_01380 SM00116 Domain in cystathionine beta-synthase and other proteins. V060002_01381 SM00867 YceI-like domain V060002_01384 SM00052 Putative diguanylate phosphodiesterase V060002_01388 SM00448 cheY-homologous receiver domain V060002_01388 SM00862 Transcriptional regulatory protein, C terminal V060002_01389 SM00387 Histidine kinase-like ATPases V060002_01389 SM00388 His Kinase A (phosphoacceptor) domain V060002_01390 SM00890 Domain of unknown function V060002_01393 SM00833 Cobalamin synthesis protein cobW C-terminal domain V060002_01397 SM00387 Histidine kinase-like ATPases V060002_01397 SM00448 cheY-homologous receiver domain V060002_01400 SM00354 helix_turn _helix lactose operon repressor V060002_01422 SM01321 V060002_01422 V060002_01475 SM00530 Helix-turn-helix XRE-family like proteins V060002_01531 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. V060002_01532 SM00507 HNH nucleases V060002_01543 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain V060002_01551 SM00530 Helix-turn-helix XRE-family like proteins V060002_01555 SM01321 V060002_01555 V060002_01556 SM01057 Eukaryotic-type carbonic anhydrase V060002_01559 SM00936 Penicillin-binding protein 5, C-terminal domain V060002_01561 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01561 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01563 SM00342 helix_turn_helix, arabinose operon control protein V060002_01565 SM00422 helix_turn_helix, mercury resistance V060002_01570 SM00387 Histidine kinase-like ATPases V060002_01570 SM00388 His Kinase A (phosphoacceptor) domain V060002_01571 SM00448 cheY-homologous receiver domain V060002_01571 SM00862 Transcriptional regulatory protein, C terminal V060002_01576 SM00642 Alpha-amylase domain V060002_01579 SM00420 helix_turn_helix, Deoxyribose operon repressor V060002_01579 SM01134 V060002_01579 V060002_01582 SM01007 Class II Aldolase and Adducin N-terminal domain V060002_01584 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family V060002_01587 SM00448 cheY-homologous receiver domain V060002_01587 SM00862 Transcriptional regulatory protein, C terminal V060002_01588 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01588 SM00387 Histidine kinase-like ATPases V060002_01588 SM00388 His Kinase A (phosphoacceptor) domain V060002_01594 SM00342 helix_turn_helix, arabinose operon control protein V060002_01595 SM00382 ATPases associated with a variety of cellular activities V060002_01601 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins V060002_01604 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01604 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01605 SM00458 Ricin-type beta-trefoil V060002_01607 SM00267 diguanylate cyclase V060002_01611 SM00387 Histidine kinase-like ATPases V060002_01612 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. V060002_01617 SM00487 DEAD-like helicases superfamily V060002_01617 SM00490 helicase superfamily c-terminal domain V060002_01618 SM01321 V060002_01618 V060002_01623 SM01240 V060002_01623 V060002_01630 SM00448 cheY-homologous receiver domain V060002_01634 SM00357 Cold shock protein domain V060002_01636 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. V060002_01636 SM00382 ATPases associated with a variety of cellular activities V060002_01642 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01642 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01646 SM00327 von Willebrand factor (vWF) type A domain V060002_01647 SM00028 Tetratricopeptide repeats V060002_01650 SM00357 Cold shock protein domain V060002_01651 SM00267 diguanylate cyclase V060002_01671 SM00382 ATPases associated with a variety of cellular activities V060002_01671 SM00448 cheY-homologous receiver domain V060002_01672 SM00091 PAS domain V060002_01672 SM00387 Histidine kinase-like ATPases V060002_01673 SM00495 Chitin-binding domain type 3 V060002_01677 SM00100 Cyclic nucleotide-monophosphate binding domain V060002_01680 SM00354 helix_turn _helix lactose operon repressor V060002_01684 SM00382 ATPases associated with a variety of cellular activities V060002_01693 SM00382 ATPases associated with a variety of cellular activities V060002_01694 SM00382 ATPases associated with a variety of cellular activities V060002_01694 SM01086 C-terminal, D2-small domain, of ClpB protein V060002_01709 SM00052 Putative diguanylate phosphodiesterase V060002_01710 SM00450 Rhodanese Homology Domain V060002_01724 SM00422 helix_turn_helix, mercury resistance V060002_01728 SM00052 Putative diguanylate phosphodiesterase V060002_01728 SM00267 diguanylate cyclase V060002_01734 SM00267 diguanylate cyclase V060002_01735 SM00382 ATPases associated with a variety of cellular activities V060002_01739 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01739 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01745 SM00487 DEAD-like helicases superfamily V060002_01745 SM00490 helicase superfamily c-terminal domain V060002_01747 SM00257 Lysin motif V060002_01749 SM00422 helix_turn_helix, mercury resistance V060002_01753 SM00028 Tetratricopeptide repeats V060002_01754 SM00267 diguanylate cyclase V060002_01757 SM00245 tail specific protease V060002_01766 SM00014 Acid phosphatase homologues V060002_01770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01774 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins V060002_01774 SM00495 Chitin-binding domain type 3 V060002_01774 SM00636 V060002_01774 V060002_01785 SM00642 Alpha-amylase domain V060002_01788 SM00421 helix_turn_helix, Lux Regulon V060002_01790 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01790 SM01049 V060002_01790 V060002_01798 SM00470 ParB-like nuclease domain V060002_01803 SM01236 V060002_01803 V060002_01804 SM00822 V060002_01804 V060002_01806 SM00448 cheY-homologous receiver domain V060002_01806 SM00862 Transcriptional regulatory protein, C terminal V060002_01807 SM00387 Histidine kinase-like ATPases V060002_01807 SM00388 His Kinase A (phosphoacceptor) domain V060002_01809 SM00382 ATPases associated with a variety of cellular activities V060002_01814 SM00448 cheY-homologous receiver domain V060002_01815 SM00073 Histidine Phosphotransfer domain V060002_01815 SM00260 Two component signalling adaptor domain V060002_01815 SM00387 Histidine kinase-like ATPases V060002_01815 SM01231 V060002_01815 V060002_01816 SM00260 Two component signalling adaptor domain V060002_01817 SM00260 Two component signalling adaptor domain V060002_01818 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01818 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01819 SM00138 Methyltransferase, chemotaxis proteins V060002_01821 SM00448 cheY-homologous receiver domain V060002_01822 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01824 SM00331 Sigma factor PP2C-like phosphatases V060002_01824 SM00448 cheY-homologous receiver domain V060002_01826 SM00382 ATPases associated with a variety of cellular activities V060002_01827 SM00052 Putative diguanylate phosphodiesterase V060002_01827 SM00267 diguanylate cyclase V060002_01831 SM00421 helix_turn_helix, Lux Regulon V060002_01834 SM00342 helix_turn_helix, arabinose operon control protein V060002_01839 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01839 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01840 SM00344 helix_turn_helix ASNC type V060002_01848 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01848 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01851 SM00450 Rhodanese Homology Domain V060002_01855 SM00849 Metallo-beta-lactamase superfamily V060002_01864 SM00062 Bacterial periplasmic substrate-binding proteins V060002_01866 SM00382 ATPases associated with a variety of cellular activities V060002_01869 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01869 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01872 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01872 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01874 SM00642 Alpha-amylase domain V060002_01877 SM00671 Sel1-like repeats. V060002_01880 SM01154 V060002_01880 V060002_01884 SM00342 helix_turn_helix, arabinose operon control protein V060002_01884 SM01009 AlkA N-terminal domain V060002_01894 SM00347 helix_turn_helix multiple antibiotic resistance protein V060002_01898 SM00342 helix_turn_helix, arabinose operon control protein V060002_01903 SM00382 ATPases associated with a variety of cellular activities V060002_01908 SM00487 DEAD-like helicases superfamily V060002_01908 SM00490 helicase superfamily c-terminal domain V060002_01910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01919 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01920 SM00062 Bacterial periplasmic substrate-binding proteins V060002_01921 SM00382 ATPases associated with a variety of cellular activities V060002_01924 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01924 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01931 SM00267 diguanylate cyclase V060002_01936 SM00267 diguanylate cyclase V060002_01936 SM01079 V060002_01936 V060002_01939 SM00267 diguanylate cyclase V060002_01940 SM00347 helix_turn_helix multiple antibiotic resistance protein V060002_01941 SM00260 Two component signalling adaptor domain V060002_01941 SM00448 cheY-homologous receiver domain V060002_01943 SM00421 helix_turn_helix, Lux Regulon V060002_01945 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. V060002_01948 SM00382 ATPases associated with a variety of cellular activities V060002_01954 SM00420 helix_turn_helix, Deoxyribose operon repressor V060002_01954 SM01134 V060002_01954 V060002_01955 SM00091 PAS domain V060002_01955 SM00267 diguanylate cyclase V060002_01957 SM00342 helix_turn_helix, arabinose operon control protein V060002_01960 SM00357 Cold shock protein domain V060002_01962 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. V060002_01967 SM00342 helix_turn_helix, arabinose operon control protein V060002_01970 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01970 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01976 SM00382 ATPases associated with a variety of cellular activities V060002_01982 SM00729 Elongator protein 3, MiaB family, Radical SAM V060002_01985 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_01985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_01991 SM00849 Metallo-beta-lactamase superfamily V060002_01993 SM01350 V060002_01993 V060002_01996 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. V060002_01997 SM00481 DNA polymerase alpha chain like domain V060002_02003 SM00421 helix_turn_helix, Lux Regulon V060002_02007 SM00829 Enoylreductase V060002_02020 SM00345 helix_turn_helix gluconate operon transcriptional repressor V060002_02025 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) V060002_02025 SM00091 PAS domain V060002_02025 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02028 SM00642 Alpha-amylase domain V060002_02031 SM00382 ATPases associated with a variety of cellular activities V060002_02035 SM00387 Histidine kinase-like ATPases V060002_02036 SM00448 cheY-homologous receiver domain V060002_02036 SM00850 LytTr DNA-binding domain V060002_02038 SM00267 diguanylate cyclase V060002_02042 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V060002_02045 SM01091 Transporter associated domain V060002_02046 SM01266 V060002_02046 V060002_02062 SM00883 Chaperonin 10 Kd subunit V060002_02063 SM00924 MgtE intracellular N domain V060002_02074 SM00357 Cold shock protein domain V060002_02074 SM00955 V060002_02074 V060002_02075 SM00487 DEAD-like helicases superfamily V060002_02075 SM00490 helicase superfamily c-terminal domain V060002_02076 SM00020 Trypsin-like serine protease V060002_02083 SM00857 Resolvase, N terminal domain V060002_02099 SM01130 V060002_02099 V060002_02110 SM00487 DEAD-like helicases superfamily V060002_02114 SM00487 DEAD-like helicases superfamily V060002_02114 SM00490 helicase superfamily c-terminal domain V060002_02134 SM00316 Ribosomal protein S1-like RNA-binding domain V060002_02139 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain V060002_02139 SM00437 Bacterial DNA topoisomerase I DNA-binding domain V060002_02139 SM00493 V060002_02139 V060002_02147 SM00354 helix_turn _helix lactose operon repressor V060002_02149 SM00448 cheY-homologous receiver domain V060002_02149 SM00862 Transcriptional regulatory protein, C terminal V060002_02155 SM00344 helix_turn_helix ASNC type V060002_02157 SM00729 Elongator protein 3, MiaB family, Radical SAM V060002_02158 SM00052 Putative diguanylate phosphodiesterase V060002_02158 SM00091 PAS domain V060002_02179 SM01131 V060002_02179 V060002_02182 SM00382 ATPases associated with a variety of cellular activities V060002_02183 SM00382 ATPases associated with a variety of cellular activities V060002_02187 SM00382 ATPases associated with a variety of cellular activities V060002_02196 SM00155 Phospholipase D. Active site motifs. V060002_02200 SM00382 ATPases associated with a variety of cellular activities V060002_02207 SM00382 ATPases associated with a variety of cellular activities V060002_02212 SM00116 Domain in cystathionine beta-synthase and other proteins. V060002_02213 SM00062 Bacterial periplasmic substrate-binding proteins V060002_02213 SM00073 Histidine Phosphotransfer domain V060002_02213 SM00387 Histidine kinase-like ATPases V060002_02213 SM00388 His Kinase A (phosphoacceptor) domain V060002_02213 SM00448 cheY-homologous receiver domain V060002_02213 SM00918 Ligated ion channel L-glutamate- and glycine-binding site V060002_02214 SM00052 Putative diguanylate phosphodiesterase V060002_02214 SM00421 helix_turn_helix, Lux Regulon V060002_02214 SM00448 cheY-homologous receiver domain V060002_02215 SM00448 cheY-homologous receiver domain V060002_02217 SM00020 Trypsin-like serine protease V060002_02222 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02222 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_02224 SM00052 Putative diguanylate phosphodiesterase V060002_02226 SM00387 Histidine kinase-like ATPases V060002_02227 SM00448 cheY-homologous receiver domain V060002_02227 SM00862 Transcriptional regulatory protein, C terminal V060002_02229 SM00487 DEAD-like helicases superfamily V060002_02229 SM00490 helicase superfamily c-terminal domain V060002_02230 SM00363 S4 RNA-binding domain V060002_02235 SM00382 ATPases associated with a variety of cellular activities V060002_02244 SM00112 Cadherin repeats. V060002_02252 SM00028 Tetratricopeptide repeats V060002_02252 SM00386 HAT (Half-A-TPR) repeats V060002_02260 SM00387 Histidine kinase-like ATPases V060002_02261 SM00448 cheY-homologous receiver domain V060002_02263 SM00260 Two component signalling adaptor domain V060002_02263 SM00448 cheY-homologous receiver domain V060002_02266 SM00267 diguanylate cyclase V060002_02274 SM00267 diguanylate cyclase V060002_02275 SM00052 Putative diguanylate phosphodiesterase V060002_02276 SM00822 V060002_02276 V060002_02282 SM01060 V060002_02282 V060002_02283 SM00248 ankyrin repeats V060002_02291 SM01022 V060002_02291 V060002_02298 SM00382 ATPases associated with a variety of cellular activities V060002_02303 SM00849 Metallo-beta-lactamase superfamily V060002_02307 SM00354 helix_turn _helix lactose operon repressor V060002_02311 SM00420 helix_turn_helix, Deoxyribose operon repressor V060002_02311 SM01134 V060002_02311 V060002_02312 SM00382 ATPases associated with a variety of cellular activities V060002_02329 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02331 SM01144 V060002_02331 V060002_02336 SM00852 Probable molybdopterin binding domain V060002_02338 SM00382 ATPases associated with a variety of cellular activities V060002_02341 SM00382 ATPases associated with a variety of cellular activities V060002_02341 SM00448 cheY-homologous receiver domain V060002_02342 SM00387 Histidine kinase-like ATPases V060002_02342 SM00388 His Kinase A (phosphoacceptor) domain V060002_02343 SM00382 ATPases associated with a variety of cellular activities V060002_02350 SM00926 Molybdopterin oxidoreductase Fe4S4 domain V060002_02359 SM00316 Ribosomal protein S1-like RNA-binding domain V060002_02363 SM00382 ATPases associated with a variety of cellular activities V060002_02365 SM00945 ProQ/FINO family V060002_02366 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. V060002_02366 SM00245 tail specific protease V060002_02373 SM00981 V060002_02373 V060002_02375 SM00382 ATPases associated with a variety of cellular activities V060002_02386 SM00382 ATPases associated with a variety of cellular activities V060002_02388 SM00382 ATPases associated with a variety of cellular activities V060002_02389 SM00387 Histidine kinase-like ATPases V060002_02389 SM00388 His Kinase A (phosphoacceptor) domain V060002_02389 SM00448 cheY-homologous receiver domain V060002_02390 SM00897 FIST N domain V060002_02390 SM01204 V060002_02390 V060002_02400 SM00100 Cyclic nucleotide-monophosphate binding domain V060002_02400 SM00419 helix_turn_helix, cAMP Regulatory protein V060002_02406 SM00382 ATPases associated with a variety of cellular activities V060002_02422 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02422 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_02427 SM00487 DEAD-like helicases superfamily V060002_02427 SM00490 helicase superfamily c-terminal domain V060002_02428 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) V060002_02428 SM00091 PAS domain V060002_02428 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02429 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02429 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_02430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02431 SM00260 Two component signalling adaptor domain V060002_02432 SM00448 cheY-homologous receiver domain V060002_02434 SM00138 Methyltransferase, chemotaxis proteins V060002_02435 SM00448 cheY-homologous receiver domain V060002_02436 SM00073 Histidine Phosphotransfer domain V060002_02436 SM00260 Two component signalling adaptor domain V060002_02436 SM00387 Histidine kinase-like ATPases V060002_02436 SM01231 V060002_02436 V060002_02438 SM00448 cheY-homologous receiver domain V060002_02439 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02447 SM00382 ATPases associated with a variety of cellular activities V060002_02447 SM00487 DEAD-like helicases superfamily V060002_02447 SM00490 helicase superfamily c-terminal domain V060002_02447 SM00847 Helicase associated domain (HA2) Add an annotation V060002_02451 SM00479 V060002_02451 V060002_02452 SM00267 diguanylate cyclase V060002_02452 SM01079 V060002_02452 V060002_02456 SM00267 diguanylate cyclase V060002_02458 SM00267 diguanylate cyclase V060002_02461 SM00028 Tetratricopeptide repeats V060002_02461 SM00267 diguanylate cyclase V060002_02467 SM00062 Bacterial periplasmic substrate-binding proteins V060002_02470 SM00382 ATPases associated with a variety of cellular activities V060002_02474 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase V060002_02475 SM00267 diguanylate cyclase V060002_02477 SM00073 Histidine Phosphotransfer domain V060002_02477 SM00091 PAS domain V060002_02477 SM00387 Histidine kinase-like ATPases V060002_02477 SM00388 His Kinase A (phosphoacceptor) domain V060002_02477 SM00448 cheY-homologous receiver domain V060002_02478 SM00448 cheY-homologous receiver domain V060002_02478 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. V060002_02491 SM00345 helix_turn_helix gluconate operon transcriptional repressor V060002_02491 SM00895 V060002_02491 V060002_02498 SM00382 ATPases associated with a variety of cellular activities V060002_02503 SM00448 cheY-homologous receiver domain V060002_02503 SM00862 Transcriptional regulatory protein, C terminal V060002_02504 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_02504 SM00387 Histidine kinase-like ATPases V060002_02504 SM00388 His Kinase A (phosphoacceptor) domain V060002_02507 SM00448 cheY-homologous receiver domain V060002_02508 SM00387 Histidine kinase-like ATPases V060002_02510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_02511 SM01005 Alanine racemase, C-terminal domain V060002_02515 SM00091 PAS domain V060002_02515 SM00382 ATPases associated with a variety of cellular activities V060002_02525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_02528 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_02528 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. V060002_02530 SM00100 Cyclic nucleotide-monophosphate binding domain V060002_02530 SM00116 Domain in cystathionine beta-synthase and other proteins. V060002_02531 SM00479 V060002_02531 V060002_02533 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02533 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_02536 SM00354 helix_turn _helix lactose operon repressor V060002_02542 SM00495 Chitin-binding domain type 3 V060002_02544 SM00347 helix_turn_helix multiple antibiotic resistance protein V060002_02545 SM00421 helix_turn_helix, Lux Regulon V060002_02545 SM00448 cheY-homologous receiver domain V060002_02546 SM00387 Histidine kinase-like ATPases V060002_02546 SM01049 V060002_02546 V060002_02552 SM00849 Metallo-beta-lactamase superfamily V060002_02562 SM00342 helix_turn_helix, arabinose operon control protein V060002_02563 SM00450 Rhodanese Homology Domain V060002_02564 SM00434 DNA Topoisomerase IV V060002_02570 SM00852 Probable molybdopterin binding domain V060002_02573 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02573 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_02573 SM01049 V060002_02573 V060002_02576 SM00382 ATPases associated with a variety of cellular activities V060002_02579 SM00855 Phosphoglycerate mutase family V060002_02594 SM00411 bacterial (prokaryotic) histone like domain V060002_02595 SM00873 B3/4 domain V060002_02595 SM00874 tRNA synthetase B5 domain V060002_02595 SM00896 Ferredoxin-fold anticodon binding domain V060002_02598 SM00267 diguanylate cyclase V060002_02604 SM00278 Helix-hairpin-helix DNA-binding motif class 1 V060002_02604 SM00465 GIY-YIG type nucleases (URI domain) V060002_02605 SM00421 helix_turn_helix, Lux Regulon V060002_02605 SM00448 cheY-homologous receiver domain V060002_02606 SM00486 DNA polymerase type-B family V060002_02607 SM00052 Putative diguanylate phosphodiesterase V060002_02609 SM00841 Elongation factor P, C-terminal V060002_02609 SM01185 V060002_02609 V060002_02612 SM00345 helix_turn_helix gluconate operon transcriptional repressor V060002_02612 SM00866 V060002_02612 V060002_02618 SM00020 Trypsin-like serine protease V060002_02624 SM00271 DnaJ molecular chaperone homology domain V060002_02624 SM00671 Sel1-like repeats. V060002_02629 SM00919 Malic enzyme, NAD binding domain V060002_02629 SM01274 V060002_02629 V060002_02632 SM00267 diguanylate cyclase V060002_02636 SM00382 ATPases associated with a variety of cellular activities V060002_02637 SM00382 ATPases associated with a variety of cellular activities V060002_02638 SM00363 S4 RNA-binding domain V060002_02640 SM00481 DNA polymerase alpha chain like domain V060002_02658 SM00387 Histidine kinase-like ATPases V060002_02659 SM00448 cheY-homologous receiver domain V060002_02670 SM00382 ATPases associated with a variety of cellular activities V060002_02670 SM01086 C-terminal, D2-small domain, of ClpB protein V060002_02672 SM00357 Cold shock protein domain V060002_02684 SM00528 Domain in histone-like proteins of HNS family V060002_02702 SM00729 Elongator protein 3, MiaB family, Radical SAM V060002_02702 SM00876 Biotin and Thiamin Synthesis associated domain V060002_02705 SM00382 ATPases associated with a variety of cellular activities V060002_02709 SM00267 diguanylate cyclase V060002_02710 SM00382 ATPases associated with a variety of cellular activities V060002_02718 SM00382 ATPases associated with a variety of cellular activities V060002_02719 SM00382 ATPases associated with a variety of cellular activities V060002_02724 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_02724 SM00387 Histidine kinase-like ATPases V060002_02725 SM00448 cheY-homologous receiver domain V060002_02726 SM00052 Putative diguanylate phosphodiesterase V060002_02726 SM00448 cheY-homologous receiver domain V060002_02727 SM00387 Histidine kinase-like ATPases V060002_02728 SM00387 Histidine kinase-like ATPases V060002_02728 SM00388 His Kinase A (phosphoacceptor) domain V060002_02730 SM00448 cheY-homologous receiver domain V060002_02731 SM00448 cheY-homologous receiver domain V060002_02735 SM00342 helix_turn_helix, arabinose operon control protein V060002_02738 SM00495 Chitin-binding domain type 3 V060002_02738 SM00636 V060002_02738 V060002_02741 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V060002_02742 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor V060002_02743 SM00062 Bacterial periplasmic substrate-binding proteins V060002_02743 SM00267 diguanylate cyclase V060002_02748 SM00344 helix_turn_helix ASNC type V060002_02754 SM00493 V060002_02754 V060002_02756 SM00382 ATPases associated with a variety of cellular activities V060002_02760 SM00448 cheY-homologous receiver domain V060002_02769 SM00226 Low molecular weight phosphatase family V060002_02778 SM00116 Domain in cystathionine beta-synthase and other proteins. V060002_02779 SM00267 diguanylate cyclase V060002_02783 SM00852 Probable molybdopterin binding domain V060002_02784 SM00729 Elongator protein 3, MiaB family, Radical SAM V060002_02787 SM00382 ATPases associated with a variety of cellular activities V060002_02787 SM00448 cheY-homologous receiver domain V060002_02788 SM00487 DEAD-like helicases superfamily V060002_02788 SM00490 helicase superfamily c-terminal domain V060002_02794 SM00900 V060002_02794 V060002_02796 SM00478 endonuclease III V060002_02796 SM00525 V060002_02796 V060002_02800 SM00479 V060002_02800 V060002_02815 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. V060002_02815 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. V060002_02819 SM00387 Histidine kinase-like ATPases V060002_02820 SM00862 Transcriptional regulatory protein, C terminal V060002_02828 SM00244 prohibitin homologues V060002_02830 SM00422 helix_turn_helix, mercury resistance V060002_02833 SM00278 Helix-hairpin-helix DNA-binding motif class 1 V060002_02833 SM00292 breast cancer carboxy-terminal domain V060002_02833 SM00532 Ligase N family V060002_02834 SM00771 ZipA, C-terminal domain (FtsZ-binding) V060002_02841 SM00729 Elongator protein 3, MiaB family, Radical SAM V060002_02844 SM00116 Domain in cystathionine beta-synthase and other proteins. V060002_02844 SM01091 Transporter associated domain V060002_02855 SM00936 Penicillin-binding protein 5, C-terminal domain V060002_02858 SM00729 Elongator protein 3, MiaB family, Radical SAM V060002_02871 SM00710 Parallel beta-helix repeats V060002_02882 SM00984 UDP binding domain V060002_02892 SM00642 Alpha-amylase domain V060002_02894 SM00354 helix_turn _helix lactose operon repressor V060002_02896 SM00382 ATPases associated with a variety of cellular activities V060002_02896 SM00930 V060002_02896 V060002_02902 SM00028 Tetratricopeptide repeats V060002_02903 SM00267 diguanylate cyclase V060002_02905 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs V060002_02905 SM00475 5'-3' exonuclease V060002_02908 SM00981 V060002_02908 V060002_02913 SM00861 Transketolase, pyrimidine binding domain V060002_02929 SM01321 V060002_02929 V060002_02930 SM01211 V060002_02930 V060002_02931 SM00062 Bacterial periplasmic substrate-binding proteins V060002_02940 SM00271 DnaJ molecular chaperone homology domain V060002_02951 SM01276 V060002_02951 V060002_02957 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02957 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_02959 SM00342 helix_turn_helix, arabinose operon control protein V060002_02971 SM00862 Transcriptional regulatory protein, C terminal V060002_02972 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_02975 SM00247 Beta/gamma crystallins V060002_02976 SM00060 Fibronectin type 3 domain V060002_02981 SM00530 Helix-turn-helix XRE-family like proteins V060002_02983 SM00487 DEAD-like helicases superfamily V060002_02983 SM00490 helicase superfamily c-terminal domain V060002_02997 SM00764 Citrate lyase ligase C-terminal domain V060002_03002 SM00091 PAS domain V060002_03002 SM00387 Histidine kinase-like ATPases V060002_03003 SM00448 cheY-homologous receiver domain V060002_03009 SM00849 Metallo-beta-lactamase superfamily V060002_03012 SM00382 ATPases associated with a variety of cellular activities V060002_03022 SM00495 Chitin-binding domain type 3 V060002_03024 SM00116 Domain in cystathionine beta-synthase and other proteins. V060002_03024 SM01240 V060002_03024 V060002_03028 SM00382 ATPases associated with a variety of cellular activities V060002_03029 SM00564 beta-propeller repeat V060002_03033 SM00530 Helix-turn-helix XRE-family like proteins V060002_03035 SM00562 V060002_03035 V060002_03040 SM00271 DnaJ molecular chaperone homology domain V060002_03049 SM01323 V060002_03049 V060002_03052 SM00116 Domain in cystathionine beta-synthase and other proteins. V060002_03060 SM00382 ATPases associated with a variety of cellular activities V060002_03066 SM00091 PAS domain V060002_03066 SM00387 Histidine kinase-like ATPases V060002_03066 SM00388 His Kinase A (phosphoacceptor) domain V060002_03067 SM00448 cheY-homologous receiver domain V060002_03067 SM00862 Transcriptional regulatory protein, C terminal V060002_03078 SM00382 ATPases associated with a variety of cellular activities V060002_03078 SM01086 C-terminal, D2-small domain, of ClpB protein V060002_03080 SM00363 S4 RNA-binding domain V060002_03083 SM00830 Chorismate mutase type II V060002_03085 SM00052 Putative diguanylate phosphodiesterase V060002_03085 SM00267 diguanylate cyclase V060002_03089 SM00382 ATPases associated with a variety of cellular activities V060002_03091 SM00830 Chorismate mutase type II V060002_03094 SM00448 cheY-homologous receiver domain V060002_03094 SM00850 LytTr DNA-binding domain V060002_03106 SM00904 Riboflavin kinase V060002_03109 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor V060002_03115 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. V060002_03117 SM00927 DNA mismatch repair enzyme MutH V060002_03120 SM00382 ATPases associated with a variety of cellular activities V060002_03122 SM00937 V060002_03122 V060002_03125 SM00487 DEAD-like helicases superfamily V060002_03125 SM00490 helicase superfamily c-terminal domain V060002_03127 SM00052 Putative diguanylate phosphodiesterase V060002_03127 SM00267 diguanylate cyclase V060002_03132 SM00052 Putative diguanylate phosphodiesterase V060002_03132 SM00091 PAS domain V060002_03132 SM00267 diguanylate cyclase V060002_03137 SM00347 helix_turn_helix multiple antibiotic resistance protein V060002_03138 SM00028 Tetratricopeptide repeats V060002_03139 SM00316 Ribosomal protein S1-like RNA-binding domain V060002_03139 SM00322 K homology RNA-binding domain V060002_03140 SM01387 V060002_03140 V060002_03144 SM00316 Ribosomal protein S1-like RNA-binding domain V060002_03144 SM00322 K homology RNA-binding domain V060002_03152 SM00382 ATPases associated with a variety of cellular activities V060002_03154 SM01103 V060002_03154 V060002_03158 SM00363 S4 RNA-binding domain V060002_03167 SM00091 PAS domain V060002_03167 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_03167 SM00387 Histidine kinase-like ATPases V060002_03167 SM00388 His Kinase A (phosphoacceptor) domain V060002_03167 SM00448 cheY-homologous receiver domain V060002_03171 SM00382 ATPases associated with a variety of cellular activities V060002_03172 SM00382 ATPases associated with a variety of cellular activities V060002_03176 SM01068 Putative carbohydrate binding domain V060002_03178 SM00382 ATPases associated with a variety of cellular activities V060002_03182 SM00938 Nitrogen regulatory protein P-II V060002_03187 SM00487 DEAD-like helicases superfamily V060002_03187 SM00490 helicase superfamily c-terminal domain V060002_03187 SM00847 Helicase associated domain (HA2) Add an annotation V060002_03197 SM00382 ATPases associated with a variety of cellular activities V060002_03199 SM00947 Carbonic anhydrase V060002_03206 SM00749 bacterial OsmY and nodulation domain V060002_03216 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. V060002_03217 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. V060002_03222 SM00382 ATPases associated with a variety of cellular activities V060002_03222 SM00962 SRP54-type protein, GTPase domain V060002_03222 SM00963 SRP54-type protein, helical bundle domain V060002_03224 SM01091 Transporter associated domain V060002_03229 SM00829 Enoylreductase V060002_03243 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain V060002_03245 SM00382 ATPases associated with a variety of cellular activities V060002_03247 SM00382 ATPases associated with a variety of cellular activities V060002_03252 SM00533 DNA-binding domain of DNA mismatch repair MUTS family V060002_03252 SM00534 ATPase domain of DNA mismatch repair MUTS family V060002_03254 SM00257 Lysin motif V060002_03263 SM00905 Dihydroneopterin aldolase V060002_03264 SM01207 V060002_03264 V060002_03269 SM00400 zinc finger V060002_03269 SM00493 V060002_03269 V060002_03269 SM00766 DNA primase DnaG DnaB-binding V060002_03274 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_03274 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_03275 SM00342 helix_turn_helix, arabinose operon control protein V060002_03276 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_03298 SM00563 Phosphate acyltransferases V060002_03301 SM00420 helix_turn_helix, Deoxyribose operon repressor V060002_03301 SM01134 V060002_03301 V060002_03310 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V060002_03313 SM00861 Transketolase, pyrimidine binding domain V060002_03315 SM00731 SprT homologues. V060002_03320 SM00732 Likely ribonuclease with RNase H fold. V060002_03321 SM00363 S4 RNA-binding domain V060002_03322 SM00421 helix_turn_helix, Lux Regulon V060002_03324 SM00382 ATPases associated with a variety of cellular activities V060002_03328 SM01152 V060002_03328 V060002_03331 SM00729 Elongator protein 3, MiaB family, Radical SAM V060002_03334 SM00478 endonuclease III V060002_03334 SM00525 V060002_03334 V060002_03341 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_03341 SM01049 V060002_03341 V060002_03347 SM00271 DnaJ molecular chaperone homology domain V060002_03351 SM00650 Ribosomal RNA adenine dimethylases V060002_03375 SM00316 Ribosomal protein S1-like RNA-binding domain V060002_03389 SM00382 ATPases associated with a variety of cellular activities V060002_03390 SM00028 Tetratricopeptide repeats V060002_03392 SM00965 Secretin and TonB N terminus short domain V060002_03396 SM00052 Putative diguanylate phosphodiesterase V060002_03396 SM00267 diguanylate cyclase V060002_03398 SM00421 helix_turn_helix, Lux Regulon V060002_03404 SM01018 B12 binding domain V060002_03430 SM01005 Alanine racemase, C-terminal domain V060002_03431 SM00382 ATPases associated with a variety of cellular activities V060002_03440 SM00838 Elongation factor G C-terminus V060002_03440 SM00889 Elongation factor G, domain IV V060002_03448 SM00320 WD40 repeats V060002_03451 SM00244 prohibitin homologues V060002_03452 SM00244 prohibitin homologues V060002_03456 SM00853 MutL C terminal dimerisation domain V060002_03456 SM01340 V060002_03456 V060002_03457 SM00257 Lysin motif V060002_03457 SM00646 V060002_03457 V060002_03465 SM00479 V060002_03465 V060002_03477 SM00663 RNA polymerase I subunit A N-terminus V060002_03482 SM00649 Ribosomal protein L11/L12 V060002_03483 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. V060002_03483 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. V060002_03494 SM00155 Phospholipase D. Active site motifs. V060002_03505 SM00357 Cold shock protein domain V060002_03505 SM00382 ATPases associated with a variety of cellular activities V060002_03505 SM00959 Rho termination factor, N-terminal domain V060002_03507 SM00487 DEAD-like helicases superfamily V060002_03507 SM00490 helicase superfamily c-terminal domain V060002_03509 SM00387 Histidine kinase-like ATPases V060002_03509 SM00388 His Kinase A (phosphoacceptor) domain V060002_03509 SM00448 cheY-homologous receiver domain V060002_03512 SM00479 V060002_03512 V060002_03516 SM00878 Biotin carboxylase C-terminal domain V060002_03520 SM00354 helix_turn _helix lactose operon repressor V060002_03528 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_03528 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_03528 SM01049 V060002_03528 V060002_03532 SM00530 Helix-turn-helix XRE-family like proteins V060002_03548 SM00342 helix_turn_helix, arabinose operon control protein V060002_03551 SM00341 Helicase and RNase D C-terminal V060002_03551 SM00487 DEAD-like helicases superfamily V060002_03551 SM00490 helicase superfamily c-terminal domain V060002_03551 SM00956 V060002_03551 V060002_03554 SM00382 ATPases associated with a variety of cellular activities V060002_03556 SM00382 ATPases associated with a variety of cellular activities V060002_03570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). V060002_03570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain V060002_03570 SM01049 V060002_03570 V060002_03575 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain V060002_03575 SM01232 V060002_03575 V060002_03600 SM00382 ATPases associated with a variety of cellular activities V060002_03613 SM00849 Metallo-beta-lactamase superfamily V060002_03613 SM01027 Beta-Casp domain V060002_03615 SM00986 Uracil DNA glycosylase superfamily V060002_03615 SM00987 UreE urease accessory protein, C-terminal domain V060002_03621 SM00411 bacterial (prokaryotic) histone like domain V060002_03623 SM01209 V060002_03623 V060002_03623 SM01210 V060002_03623 V060002_03624 SM00798 AICARFT/IMPCHase bienzyme V060002_03624 SM00851 MGS-like domain V060002_03625 SM00422 helix_turn_helix, mercury resistance V060002_03626 SM00862 Transcriptional regulatory protein, C terminal V060002_03639 SM00530 Helix-turn-helix XRE-family like proteins V060002_03646 SM00382 ATPases associated with a variety of cellular activities V060002_03676 SM00382 ATPases associated with a variety of cellular activities V060002_03684 SM00470 ParB-like nuclease domain V060002_03687 SM01228 V060002_03687