locus-tag class description V130003_00010 PF00308 Bacterial dnaA protein V130003_00010 PF08299 Bacterial dnaA protein helix-turn-helix V130003_00010 PF11638 DnaA N-terminal domain V130003_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain V130003_00020 PF02767 DNA polymerase III beta subunit, central domain V130003_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain V130003_00030 PF02463 RecF/RecN/SMC N terminal domain V130003_00040 PF01751 Toprim domain V130003_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_00040 PF18053 DNA gyrase B subunit insert domain V130003_00040 PF00986 DNA gyrase B subunit, carboxyl terminus V130003_00040 PF00204 DNA gyrase B V130003_00050 PF00204 DNA gyrase B V130003_00050 PF00986 DNA gyrase B subunit, carboxyl terminus V130003_00050 PF18053 DNA gyrase B subunit insert domain V130003_00050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_00050 PF01751 Toprim domain V130003_00060 PF01609 Transposase DDE domain V130003_00060 PF13006 Insertion element 4 transposase N-terminal V130003_00080 PF00011 Hsp20/alpha crystallin family V130003_00090 PF00155 Aminotransferase class I and II V130003_00100 PF05746 DALR anticodon binding domain V130003_00100 PF02092 Glycyl-tRNA synthetase beta subunit V130003_00110 PF02091 Glycyl-tRNA synthetase alpha subunit V130003_00120 PF01169 Uncharacterized protein family UPF0016 V130003_00140 PF01206 Sulfurtransferase TusA V130003_00160 PF08240 Alcohol dehydrogenase GroES-like domain V130003_00160 PF00107 Zinc-binding dehydrogenase V130003_00170 PF00291 Pyridoxal-phosphate dependent enzyme V130003_00170 PF00585 C-terminal regulatory domain of Threonine dehydratase V130003_00180 PF00920 Dehydratase family V130003_00190 PF01063 Amino-transferase class IV V130003_00210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V130003_00210 PF00205 Thiamine pyrophosphate enzyme, central domain V130003_00210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V130003_00220 PF01078 Magnesium chelatase, subunit ChlI V130003_00220 PF13335 Magnesium chelatase, subunit ChlI C-terminal V130003_00230 PF01553 Acyltransferase V130003_00240 PF01323 DSBA-like thioredoxin domain V130003_00250 PF01636 Phosphotransferase enzyme family V130003_00260 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase V130003_00260 PF12801 4Fe-4S binding domain V130003_00260 PF13746 4Fe-4S dicluster domain V130003_00270 PF06288 Protein of unknown function (DUF1040) V130003_00280 PF07070 SpoOM protein V130003_00290 PF03006 Haemolysin-III related V130003_00310 PF02386 Cation transport protein V130003_00320 PF02254 TrkA-N domain V130003_00320 PF02080 TrkA-C domain V130003_00330 PF01029 NusB family V130003_00330 PF01189 16S rRNA methyltransferase RsmB/F V130003_00340 PF00551 Formyl transferase V130003_00340 PF02911 Formyl transferase, C-terminal domain V130003_00350 PF01327 Polypeptide deformylase V130003_00360 PF01476 LysM domain V130003_00370 PF17782 DprA winged helix domain V130003_00370 PF02481 DNA recombination-mediator protein A V130003_00380 PF04361 Protein of unknown function (DUF494) V130003_00390 PF01396 Topoisomerase DNA binding C4 zinc finger V130003_00400 PF02222 ATP-grasp domain V130003_00400 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain V130003_00410 PF00731 AIR carboxylase V130003_00420 PF01300 Telomere recombination V130003_00430 PF01218 Coproporphyrinogen III oxidase V130003_00440 PF08501 Shikimate dehydrogenase substrate binding domain V130003_00440 PF18317 Shikimate 5'-dehydrogenase C-terminal domain V130003_00440 PF01488 Shikimate / quinate 5-dehydrogenase V130003_00460 PF00132 Bacterial transferase hexapeptide (six repeats) V130003_00480 PF02537 CrcB-like protein, Camphor Resistance (CrcB) V130003_00490 PF01964 Radical SAM ThiC family V130003_00490 PF13667 ThiC-associated domain V130003_00500 PF02581 Thiamine monophosphate synthase V130003_00510 PF00899 ThiF family V130003_00520 PF02597 ThiS family V130003_00530 PF05690 Thiazole biosynthesis protein ThiG V130003_00540 PF04055 Radical SAM superfamily V130003_00540 PF06968 Biotin and Thiamin Synthesis associated domain V130003_00560 PF13276 HTH-like domain V130003_00560 PF00665 Integrase core domain V130003_00560 PF13333 Integrase core domain V130003_00570 PF00557 Metallopeptidase family M24 V130003_00570 PF00557 Metallopeptidase family M24 V130003_00570 PF01321 Creatinase/Prolidase N-terminal domain V130003_00570 PF01321 Creatinase/Prolidase N-terminal domain V130003_00580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_00580 PF03466 LysR substrate binding domain V130003_00590 PF07690 Major Facilitator Superfamily V130003_00610 PF01037 Lrp/AsnC ligand binding domain V130003_00620 PF00563 EAL domain V130003_00620 PF08448 PAS fold V130003_00620 PF00990 Diguanylate cyclase, GGDEF domain V130003_00630 PF04445 Putative SAM-dependent methyltransferase V130003_00660 PF00892 EamA-like transporter family V130003_00670 PF00582 Universal stress protein family V130003_00680 PF00210 Ferritin-like domain V130003_00690 PF10625 Universal stress protein B (UspB) V130003_00720 PF02646 RmuC family V130003_00730 PF01209 ubiE/COQ5 methyltransferase family V130003_00740 PF02036 SCP-2 sterol transfer family V130003_00750 PF03109 ABC1 family V130003_00760 PF02416 mttA/Hcf106 family V130003_00770 PF02416 mttA/Hcf106 family V130003_00780 PF00902 Sec-independent protein translocase protein (TatC) V130003_00790 PF03150 Di-haem cytochrome c peroxidase V130003_00790 PF00034 Cytochrome c V130003_00800 PF01554 MatE V130003_00820 PF01726 LexA DNA binding domain V130003_00820 PF00717 Peptidase S24-like V130003_00830 PF01553 Acyltransferase V130003_00840 PF01609 Transposase DDE domain V130003_00840 PF13006 Insertion element 4 transposase N-terminal V130003_00850 PF01040 UbiA prenyltransferase family V130003_00860 PF04345 Chorismate lyase V130003_00870 PF03748 Flagellar basal body-associated protein FliL V130003_00880 PF00672 HAMP domain V130003_00880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_00880 PF02203 Tar ligand binding domain homologue V130003_00890 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease V130003_00890 PF01694 Rhomboid family V130003_00900 PF00581 Rhodanese-like domain V130003_00920 PF01026 TatD related DNase V130003_00930 PF00490 Delta-aminolevulinic acid dehydratase V130003_00950 PF01612 3'-5' exonuclease V130003_00950 PF00476 DNA polymerase family A V130003_00950 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V130003_00950 PF01367 5'-3' exonuclease, C-terminal SAM fold V130003_00960 PF01926 50S ribosome-binding GTPase V130003_00970 PF01926 50S ribosome-binding GTPase V130003_00980 PF00034 Cytochrome c V130003_01000 PF04220 Der GTPase activator (YihI) V130003_01010 PF10675 Protein of unknown function (DUF2489) V130003_01020 PF04055 Radical SAM superfamily V130003_01020 PF06969 HemN C-terminal domain V130003_01030 PF07219 HemY protein N-terminus V130003_01040 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase V130003_01050 PF02602 Uroporphyrinogen-III synthase HemD V130003_01060 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain V130003_01060 PF03900 Porphobilinogen deaminase, C-terminal domain V130003_01070 PF12633 Adenylate cyclase NT domain V130003_01070 PF01295 Adenylate cyclase, class-I V130003_01080 PF01491 Frataxin-like domain V130003_01100 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V130003_01100 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain V130003_01110 PF01678 Diaminopimelate epimerase V130003_01120 PF04340 Protein of unknown function, DUF484 V130003_01130 PF00589 Phage integrase family V130003_01130 PF02899 Phage integrase, N-terminal SAM-like domain V130003_01140 PF13419 Haloacid dehalogenase-like hydrolase V130003_01150 PF10442 FIST C domain V130003_01150 PF00990 Diguanylate cyclase, GGDEF domain V130003_01150 PF08495 FIST N domain V130003_01150 PF00563 EAL domain V130003_01190 PF12146 Serine aminopeptidase, S33 V130003_01200 PF01810 LysE type translocator V130003_01210 PF08668 HDOD domain V130003_01210 PF00563 EAL domain V130003_01220 PF00210 Ferritin-like domain V130003_01260 PF13276 HTH-like domain V130003_01260 PF00665 Integrase core domain V130003_01260 PF13333 Integrase core domain V130003_01300 PF00448 SRP54-type protein, GTPase domain V130003_01300 PF02881 SRP54-type protein, helical bundle domain V130003_01310 PF00005 ABC transporter V130003_01320 PF18075 FtsX extracellular domain V130003_01330 PF00140 Sigma-70 factor, region 1.2 V130003_01330 PF04542 Sigma-70 region 2 V130003_01330 PF04545 Sigma-70, region 4 V130003_01340 PF07992 Pyridine nucleotide-disulphide oxidoreductase V130003_01340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V130003_01350 PF00440 Bacterial regulatory proteins, tetR family V130003_01390 PF01527 Transposase V130003_01400 PF00665 Integrase core domain V130003_01400 PF13333 Integrase core domain V130003_01400 PF13276 HTH-like domain V130003_01480 PF05958 tRNA (Uracil-5-)-methyltransferase V130003_01490 PF00593 TonB dependent receptor V130003_01490 PF07715 TonB-dependent Receptor Plug Domain V130003_01500 PF01797 Transposase IS200 like V130003_01510 PF01797 Transposase IS200 like V130003_01520 PF05922 Peptidase inhibitor I9 V130003_01520 PF00082 Subtilase family V130003_01520 PF04151 Bacterial pre-peptidase C-terminal domain V130003_01530 PF01177 Asp/Glu/Hydantoin racemase V130003_01550 PF00962 Adenosine/AMP deaminase V130003_01560 PF00563 EAL domain V130003_01560 PF00990 Diguanylate cyclase, GGDEF domain V130003_01560 PF03707 Bacterial signalling protein N terminal repeat V130003_01560 PF13188 PAS domain V130003_01570 PF00158 Sigma-54 interaction domain V130003_01570 PF00072 Response regulator receiver domain V130003_01570 PF02954 Bacterial regulatory protein, Fis family V130003_01580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_01580 PF00512 His Kinase A (phospho-acceptor) domain V130003_01580 PF00989 PAS fold V130003_01600 PF00120 Glutamine synthetase, catalytic domain V130003_01600 PF03951 Glutamine synthetase, beta-Grasp domain V130003_01610 PF00679 Elongation factor G C-terminus V130003_01610 PF00009 Elongation factor Tu GTP binding domain V130003_01610 PF03144 Elongation factor Tu domain 2 V130003_01620 PF03668 P-loop ATPase protein family V130003_01630 PF03631 Virulence factor BrkB V130003_01640 PF02580 D-Tyr-tRNA(Tyr) deacylase V130003_01650 PF09500 Putative thioesterase (yiiD_Cterm) V130003_01650 PF00583 Acetyltransferase (GNAT) family V130003_01670 PF01293 Phosphoenolpyruvate carboxykinase V130003_01680 PF01430 Hsp33 protein V130003_01690 PF01479 S4 domain V130003_01700 PF11356 Type II secretion system protein C V130003_01710 PF00263 Bacterial type II and III secretion system protein V130003_01710 PF03958 Bacterial type II/III secretion system short domain V130003_01720 PF00437 Type II/IV secretion system protein V130003_01730 PF00482 Type II secretion system (T2SS), protein F V130003_01740 PF08334 Type II secretion system (T2SS), protein G V130003_01740 PF07963 Prokaryotic N-terminal methylation motif V130003_01750 PF12019 Type II transport protein GspH V130003_01760 PF07963 Prokaryotic N-terminal methylation motif V130003_01760 PF02501 Type II secretion system (T2SS), protein I V130003_01770 PF07963 Prokaryotic N-terminal methylation motif V130003_01770 PF11612 Type II secretion system (T2SS), protein J V130003_01780 PF03934 Type II secretion system (T2SS), protein K V130003_01790 PF05134 Type II secretion system (T2SS), protein L V130003_01790 PF12693 GspL periplasmic domain V130003_01800 PF12693 GspL periplasmic domain V130003_01800 PF05134 Type II secretion system (T2SS), protein L V130003_01810 PF04612 Type II secretion system (T2SS), protein M V130003_01820 PF01203 Type II secretion system (T2SS), protein N V130003_01830 PF00459 Inositol monophosphatase family V130003_01840 PF00293 NUDIX domain V130003_01850 PF01521 Iron-sulphur cluster biosynthesis V130003_01850 PF01106 NifU-like domain V130003_01860 PF00156 Phosphoribosyl transferase domain V130003_01870 PF00561 alpha/beta hydrolase fold V130003_01890 PF17674 HHH domain V130003_01890 PF16921 Tex protein YqgF-like domain V130003_01890 PF09371 Tex-like protein N-terminal domain V130003_01890 PF00575 S1 RNA binding domain V130003_01900 PF03449 Transcription elongation factor, N-terminal V130003_01900 PF01272 Transcription elongation factor, GreA/GreB, C-term V130003_01930 PF00005 ABC transporter V130003_01940 PF02653 Branched-chain amino acid transport system / permease component V130003_01950 PF01915 Glycosyl hydrolase family 3 C-terminal domain V130003_01950 PF00933 Glycosyl hydrolase family 3 N terminal domain V130003_01960 PF00704 Glycosyl hydrolases family 18 V130003_01960 PF08329 Chitinase A, N-terminal domain V130003_01970 PF00072 Response regulator receiver domain V130003_01970 PF00486 Transcriptional regulatory protein, C terminal V130003_01980 PF00512 His Kinase A (phospho-acceptor) domain V130003_01980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_01980 PF00672 HAMP domain V130003_01990 PF00860 Permease family V130003_02000 PF17191 RecG wedge domain V130003_02000 PF00271 Helicase conserved C-terminal domain V130003_02000 PF00270 DEAD/DEAH box helicase V130003_02010 PF02824 TGS domain V130003_02010 PF04607 Region found in RelA / SpoT proteins V130003_02010 PF13291 ACT domain V130003_02020 PF01192 RNA polymerase Rpb6 V130003_02030 PF00625 Guanylate kinase V130003_02040 PF02592 Putative vitamin uptake transporter V130003_02050 PF00474 Sodium:solute symporter family V130003_02070 PF03471 Transporter associated domain V130003_02070 PF00999 Sodium/hydrogen exchanger family V130003_02070 PF02080 TrkA-C domain V130003_02080 PF00196 Bacterial regulatory proteins, luxR family V130003_02080 PF00072 Response regulator receiver domain V130003_02090 PF02683 Cytochrome C biogenesis protein transmembrane region V130003_02090 PF11412 Disulphide bond corrector protein DsbC V130003_02100 PF18494 Pullulanase Ins domain V130003_02100 PF03714 Bacterial pullanase-associated domain V130003_02100 PF17967 Pullulanase N2 domain V130003_02100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V130003_02100 PF11852 Domain of unknown function (DUF3372) V130003_02110 PF01609 Transposase DDE domain V130003_02110 PF13006 Insertion element 4 transposase N-terminal V130003_02120 PF03605 Anaerobic c4-dicarboxylate membrane transporter V130003_02130 PF00206 Lyase V130003_02130 PF10415 Fumarase C C-terminus V130003_02150 PF00990 Diguanylate cyclase, GGDEF domain V130003_02150 PF17158 Membrane-associated sensor, integral membrane domain V130003_02160 PF04186 FxsA cytoplasmic membrane protein V130003_02170 PF00588 SpoU rRNA Methylase family V130003_02180 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V130003_02180 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V130003_02190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_02190 PF00672 HAMP domain V130003_02190 PF00512 His Kinase A (phospho-acceptor) domain V130003_02190 PF16527 Two-component sensor protein CpxA, periplasmic domain V130003_02200 PF00072 Response regulator receiver domain V130003_02200 PF00486 Transcriptional regulatory protein, C terminal V130003_02220 PF16916 Dimerisation domain of Zinc Transporter V130003_02220 PF01545 Cation efflux family V130003_02230 PF00365 Phosphofructokinase V130003_02240 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded V130003_02250 PF06005 Cell division protein ZapB V130003_02260 PF02219 Methylenetetrahydrofolate reductase V130003_02270 PF00696 Amino acid kinase family V130003_02270 PF00742 Homoserine dehydrogenase V130003_02270 PF03447 Homoserine dehydrogenase, NAD binding domain V130003_02280 PF01053 Cys/Met metabolism PLP-dependent enzyme V130003_02290 PF01340 Met Apo-repressor, MetJ V130003_02300 PF00390 Malic enzyme, N-terminal domain V130003_02300 PF03949 Malic enzyme, NAD binding domain V130003_02310 PF01197 Ribosomal protein L31 V130003_02320 PF18074 Primosomal protein N C-terminal domain V130003_02320 PF00270 DEAD/DEAH box helicase V130003_02320 PF18319 PriA DNA helicase Cys-rich region (CRR) domain V130003_02320 PF00271 Helicase conserved C-terminal domain V130003_02320 PF17764 3′ DNA-binding domain (3′BD) V130003_02330 PF00356 Bacterial regulatory proteins, lacI family V130003_02340 PF05036 Sporulation related domain V130003_02350 PF00227 Proteasome subunit V130003_02360 PF07724 AAA domain (Cdc48 subfamily) V130003_02360 PF00004 ATPase family associated with various cellular activities (AAA) V130003_02360 PF10431 C-terminal, D2-small domain, of ClpB protein V130003_02370 PF01040 UbiA prenyltransferase family V130003_02380 PF03737 Aldolase/RraA V130003_02390 PF01554 MatE V130003_02400 PF00121 Triosephosphate isomerase V130003_02440 PF08220 DeoR-like helix-turn-helix domain V130003_02440 PF00455 DeoR C terminal sensor domain V130003_02450 PF00166 Chaperonin 10 Kd subunit V130003_02460 PF00118 TCP-1/cpn60 chaperonin family V130003_02480 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) V130003_02510 PF01527 Transposase V130003_02520 PF00665 Integrase core domain V130003_02530 PF13006 Insertion element 4 transposase N-terminal V130003_02530 PF01609 Transposase DDE domain V130003_02550 PF04055 Radical SAM superfamily V130003_02560 PF09285 Elongation factor P, C-terminal V130003_02560 PF01132 Elongation factor P (EF-P) OB domain V130003_02560 PF08207 Elongation factor P (EF-P) KOW-like domain V130003_02570 PF02313 Fumarate reductase subunit D V130003_02580 PF02300 Fumarate reductase subunit C V130003_02590 PF13085 2Fe-2S iron-sulfur cluster binding domain V130003_02590 PF13183 4Fe-4S dicluster domain V130003_02600 PF00890 FAD binding domain V130003_02600 PF02910 Fumarate reductase flavoprotein C-term V130003_02610 PF00152 tRNA synthetases class II (D, K and N) V130003_02620 PF00581 Rhodanese-like domain V130003_02630 PF02556 Preprotein translocase subunit SecB V130003_02640 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus V130003_02640 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus V130003_02650 PF00132 Bacterial transferase hexapeptide (six repeats) V130003_02650 PF06426 Serine acetyltransferase, N-terminal V130003_02670 PF00311 Phosphoenolpyruvate carboxylase V130003_02680 PF01546 Peptidase family M20/M25/M40 V130003_02680 PF07687 Peptidase dimerisation domain V130003_02690 PF01118 Semialdehyde dehydrogenase, NAD binding domain V130003_02690 PF02774 Semialdehyde dehydrogenase, dimerisation domain V130003_02700 PF01118 Semialdehyde dehydrogenase, NAD binding domain V130003_02700 PF02774 Semialdehyde dehydrogenase, dimerisation domain V130003_02710 PF00696 Amino acid kinase family V130003_02720 PF00764 Arginosuccinate synthase V130003_02730 PF00206 Lyase V130003_02730 PF14698 Argininosuccinate lyase C-terminal V130003_02750 PF07992 Pyridine nucleotide-disulphide oxidoreductase V130003_02750 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V130003_02760 PF00462 Glutaredoxin V130003_02760 PF08534 Redoxin V130003_02770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_02770 PF03466 LysR substrate binding domain V130003_02780 PF17092 Penicillin-binding protein OB-like domain V130003_02780 PF00912 Transglycosylase V130003_02780 PF00905 Penicillin binding protein transpeptidase domain V130003_02820 PF04351 Pilus assembly protein, PilP V130003_02830 PF11741 AMIN domain V130003_02830 PF00263 Bacterial type II and III secretion system protein V130003_02830 PF07660 Secretin and TonB N terminus short domain V130003_02830 PF03958 Bacterial type II/III secretion system short domain V130003_02840 PF01202 Shikimate kinase V130003_02850 PF01761 3-dehydroquinate synthase V130003_02870 PF02086 D12 class N6 adenine-specific DNA methyltransferase V130003_02880 PF00834 Ribulose-phosphate 3 epimerase family V130003_02890 PF13419 Haloacid dehalogenase-like hydrolase V130003_02900 PF00579 tRNA synthetases class I (W and Y) V130003_02930 PF18693 TRAM domain V130003_02930 PF00919 Uncharacterized protein family UPF0004 V130003_02930 PF04055 Radical SAM superfamily V130003_02940 PF00117 Glutamine amidotransferase class-I V130003_02950 PF00202 Aminotransferase class-III V130003_02960 PF04958 Arginine N-succinyltransferase beta subunit V130003_02970 PF00171 Aldehyde dehydrogenase family V130003_03000 PF13333 Integrase core domain V130003_03000 PF00665 Integrase core domain V130003_03000 PF13276 HTH-like domain V130003_03010 PF00027 Cyclic nucleotide-binding domain V130003_03010 PF13545 Crp-like helix-turn-helix domain V130003_03020 PF00485 Phosphoribulokinase / Uridine kinase family V130003_03030 PF06794 Uncharacterised protein family (UPF0270) V130003_03040 PF00561 alpha/beta hydrolase fold V130003_03060 PF00005 ABC transporter V130003_03060 PF12848 ABC transporter V130003_03070 PF02525 Flavodoxin-like fold V130003_03080 PF00999 Sodium/hydrogen exchanger family V130003_03080 PF02254 TrkA-N domain V130003_03100 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V130003_03110 PF01112 Asparaginase V130003_03120 PF00709 Adenylosuccinate synthetase V130003_03130 PF08238 Sel1 repeat V130003_03140 PF11893 Domain of unknown function (DUF3413) V130003_03140 PF00884 Sulfatase V130003_03150 PF17876 Cold shock domain V130003_03150 PF08206 Ribonuclease B OB domain V130003_03150 PF00773 RNB domain V130003_03150 PF08461 Ribonuclease R winged-helix domain V130003_03150 PF00575 S1 RNA binding domain V130003_03160 PF00588 SpoU rRNA Methylase family V130003_03160 PF08032 RNA 2'-O ribose methyltransferase substrate binding V130003_03170 PF00338 Ribosomal protein S10p/S20e V130003_03180 PF00297 Ribosomal protein L3 V130003_03190 PF00573 Ribosomal protein L4/L1 family V130003_03200 PF00276 Ribosomal protein L23 V130003_03210 PF03947 Ribosomal Proteins L2, C-terminal domain V130003_03210 PF00181 Ribosomal Proteins L2, RNA binding domain V130003_03220 PF00203 Ribosomal protein S19 V130003_03230 PF00237 Ribosomal protein L22p/L17e V130003_03240 PF07650 KH domain V130003_03240 PF00189 Ribosomal protein S3, C-terminal domain V130003_03250 PF00252 Ribosomal protein L16p/L10e V130003_03260 PF00831 Ribosomal L29 protein V130003_03270 PF00366 Ribosomal protein S17 V130003_03280 PF00238 Ribosomal protein L14p/L23e V130003_03290 PF00467 KOW motif V130003_03290 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 V130003_03300 PF00281 Ribosomal protein L5 V130003_03300 PF00673 ribosomal L5P family C-terminus V130003_03310 PF00253 Ribosomal protein S14p/S29e V130003_03320 PF00410 Ribosomal protein S8 V130003_03330 PF00347 Ribosomal protein L6 V130003_03340 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast V130003_03350 PF00333 Ribosomal protein S5, N-terminal domain V130003_03350 PF03719 Ribosomal protein S5, C-terminal domain V130003_03360 PF00327 Ribosomal protein L30p/L7e V130003_03370 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A V130003_03380 PF00344 SecY translocase V130003_03390 PF00416 Ribosomal protein S13/S18 V130003_03400 PF00411 Ribosomal protein S11 V130003_03410 PF00163 Ribosomal protein S4/S9 N-terminal domain V130003_03410 PF01479 S4 domain V130003_03420 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain V130003_03420 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain V130003_03420 PF01000 RNA polymerase Rpb3/RpoA insert domain V130003_03430 PF01196 Ribosomal protein L17 V130003_03450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V130003_03450 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V130003_03460 PF04225 Opacity-associated protein A LysM-like domain V130003_03460 PF08525 Opacity-associated protein A N-terminal motif V130003_03470 PF00892 EamA-like transporter family V130003_03480 PF13673 Acetyltransferase (GNAT) domain V130003_03490 PF00270 DEAD/DEAH box helicase V130003_03490 PF03880 DbpA RNA binding domain V130003_03490 PF00271 Helicase conserved C-terminal domain V130003_03510 PF02872 5'-nucleotidase, C-terminal domain V130003_03510 PF00149 Calcineurin-like phosphoesterase V130003_03520 PF10414 Sirohaem synthase dimerisation region V130003_03520 PF14824 Sirohaem biosynthesis protein central V130003_03520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V130003_03530 PF01507 Phosphoadenosine phosphosulfate reductase family V130003_03540 PF00009 Elongation factor Tu GTP binding domain V130003_03590 PF00005 ABC transporter V130003_03590 PF02687 FtsX-like permease family V130003_03590 PF12704 MacB-like periplasmic core domain V130003_03610 PF10795 Protein of unknown function (DUF2607) V130003_03620 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) V130003_03630 PF01625 Peptide methionine sulfoxide reductase V130003_03640 PF01103 Surface antigen V130003_03640 PF07244 Surface antigen variable number repeat V130003_03640 PF17243 POTRA domain TamA domain 1 V130003_03650 PF04357 TamB, inner membrane protein subunit of TAM complex V130003_03660 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like V130003_03670 PF00719 Inorganic pyrophosphatase V130003_03680 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain V130003_03690 PF01225 Mur ligase family, catalytic domain V130003_03690 PF02875 Mur ligase family, glutamate ligase domain V130003_03690 PF08245 Mur ligase middle domain V130003_03700 PF02441 Flavoprotein V130003_03720 PF00528 Binding-protein-dependent transport system inner membrane component V130003_03730 PF00005 ABC transporter V130003_03740 PF04751 Protein of unknown function (DUF615) V130003_03750 PF01523 Putative modulator of DNA gyrase V130003_03760 PF00571 CBS domain V130003_03760 PF01769 Divalent cation transporter V130003_03760 PF03448 MgtE intracellular N domain V130003_03770 PF00381 PTS HPr component phosphorylation site V130003_03780 PF03668 P-loop ATPase protein family V130003_03790 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V130003_03800 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V130003_03810 PF04963 Sigma-54 factor, core binding domain V130003_03810 PF04552 Sigma-54, DNA binding domain V130003_03810 PF00309 Sigma-54 factor, Activator interacting domain (AID) V130003_03820 PF12399 Branched-chain amino acid ATP-binding cassette transporter V130003_03820 PF00005 ABC transporter V130003_03830 PF03968 OstA-like protein V130003_03860 PF00571 CBS domain V130003_03860 PF01380 SIS domain V130003_03870 PF01699 Sodium/calcium exchanger protein V130003_03880 PF00005 ABC transporter V130003_03890 PF02405 Permease MlaE V130003_03900 PF02470 MlaD protein V130003_03910 PF05494 MlaC protein V130003_03930 PF01722 BolA-like protein V130003_03940 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V130003_03950 PF01553 Acyltransferase V130003_03960 PF01042 Endoribonuclease L-PSP V130003_03970 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain V130003_03970 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain V130003_03980 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V130003_03980 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V130003_03990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V130003_03990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V130003_04000 PF02562 PhoH-like protein V130003_04000 PF13638 PIN domain V130003_04010 PF18339 RapA N-terminal Tudor like domain 1 V130003_04010 PF00176 SNF2 family N-terminal domain V130003_04010 PF00271 Helicase conserved C-terminal domain V130003_04010 PF12137 RNA polymerase recycling family C-terminal V130003_04010 PF18337 RapA N-terminal Tudor like domain V130003_04020 PF00849 RNA pseudouridylate synthase V130003_04030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V130003_04030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V130003_04040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V130003_04040 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V130003_04050 PF13006 Insertion element 4 transposase N-terminal V130003_04050 PF01609 Transposase DDE domain V130003_04060 PF08264 Anticodon-binding domain of tRNA V130003_04060 PF00133 tRNA synthetases class I (I, L, M and V) V130003_04060 PF10458 Valyl tRNA synthetase tRNA binding arm V130003_04080 PF00883 Cytosol aminopeptidase family, catalytic domain V130003_04080 PF02789 Cytosol aminopeptidase family, N-terminal domain V130003_04090 PF03739 Lipopolysaccharide export system permease LptF/LptG V130003_04100 PF03739 Lipopolysaccharide export system permease LptF/LptG V130003_04120 PF00072 Response regulator receiver domain V130003_04140 PF00694 Aconitase C-terminal domain V130003_04150 PF00330 Aconitase family (aconitate hydratase) V130003_04160 PF00180 Isocitrate/isopropylmalate dehydrogenase V130003_04170 PF00682 HMGL-like V130003_04170 PF08502 LeuA allosteric (dimerisation) domain V130003_04190 PF01569 PAP2 superfamily V130003_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_04210 PF03466 LysR substrate binding domain V130003_04220 PF00501 AMP-binding enzyme V130003_04230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V130003_04230 PF00205 Thiamine pyrophosphate enzyme, central domain V130003_04230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V130003_04240 PF10369 Small subunit of acetolactate synthase V130003_04250 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V130003_04250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V130003_04250 PF01842 ACT domain V130003_04260 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) V130003_04270 PF01812 5-formyltetrahydrofolate cyclo-ligase family V130003_04280 PF05164 Cell division protein ZapA V130003_04290 PF03695 Uncharacterised protein family (UPF0149) V130003_04300 PF01494 FAD binding domain V130003_04310 PF01494 FAD binding domain V130003_04340 PF03937 Flavinator of succinate dehydrogenase V130003_04360 PF00890 FAD binding domain V130003_04360 PF02910 Fumarate reductase flavoprotein C-term V130003_04370 PF08281 Sigma-70, region 4 V130003_04370 PF04542 Sigma-70 region 2 V130003_04380 PF03873 Anti sigma-E protein RseA, C-terminal domain V130003_04380 PF03872 Anti sigma-E protein RseA, N-terminal domain V130003_04390 PF03888 MucB/RseB N-terminal domain V130003_04390 PF17188 MucB/RseB C-terminal domain V130003_04410 PF00679 Elongation factor G C-terminus V130003_04410 PF00009 Elongation factor Tu GTP binding domain V130003_04410 PF03144 Elongation factor Tu domain 2 V130003_04410 PF06421 GTP-binding protein LepA C-terminus V130003_04420 PF10502 Signal peptidase, peptidase S26 V130003_04430 PF00035 Double-stranded RNA binding motif V130003_04430 PF14622 Ribonuclease-III-like V130003_04440 PF07650 KH domain V130003_04440 PF01926 50S ribosome-binding GTPase V130003_04450 PF02565 Recombination protein O C terminal V130003_04450 PF11967 Recombination protein O N terminal V130003_04460 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ V130003_04470 PF01648 4'-phosphopantetheinyl transferase superfamily V130003_04510 PF00990 Diguanylate cyclase, GGDEF domain V130003_04520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_04520 PF01627 Hpt domain V130003_04520 PF00512 His Kinase A (phospho-acceptor) domain V130003_04520 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V130003_04520 PF00672 HAMP domain V130003_04520 PF00072 Response regulator receiver domain V130003_04530 PF01938 TRAM domain V130003_04530 PF05958 tRNA (Uracil-5-)-methyltransferase V130003_04540 PF02824 TGS domain V130003_04540 PF13291 ACT domain V130003_04540 PF04607 Region found in RelA / SpoT proteins V130003_04550 PF03819 MazG nucleotide pyrophosphohydrolase domain V130003_04560 PF06418 CTP synthase N-terminus V130003_04560 PF00117 Glutamine amidotransferase class-I V130003_04570 PF00113 Enolase, C-terminal TIM barrel domain V130003_04570 PF03952 Enolase, N-terminal domain V130003_04580 PF01966 HD domain V130003_04580 PF12627 Probable RNA and SrmB- binding site of polymerase A V130003_04580 PF01743 Poly A polymerase head domain V130003_04590 PF13401 AAA domain V130003_04590 PF01471 Putative peptidoglycan binding domain V130003_04610 PF08239 Bacterial SH3 domain V130003_04620 PF01384 Phosphate transporter family V130003_04630 PF01865 Protein of unknown function DUF47 V130003_04640 PF01928 CYTH domain V130003_04650 PF13006 Insertion element 4 transposase N-terminal V130003_04650 PF01609 Transposase DDE domain V130003_04660 PF02743 Cache domain V130003_04660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_04660 PF00672 HAMP domain V130003_04670 PF08335 GlnD PII-uridylyltransferase V130003_04670 PF03710 Glutamate-ammonia ligase adenylyltransferase V130003_04680 PF01467 Cytidylyltransferase-like V130003_04680 PF00294 pfkB family carbohydrate kinase V130003_04690 PF02321 Outer membrane efflux protein V130003_04700 PF00293 NUDIX domain V130003_04710 PF06853 Protein of unknown function (DUF1249) V130003_04720 PF00149 Calcineurin-like phosphoesterase V130003_04730 PF05728 Uncharacterised protein family (UPF0227) V130003_04740 PF00986 DNA gyrase B subunit, carboxyl terminus V130003_04740 PF01751 Toprim domain V130003_04740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_04740 PF00204 DNA gyrase B V130003_04750 PF03989 DNA gyrase C-terminal domain, beta-propeller V130003_04750 PF00521 DNA gyrase/topoisomerase IV, subunit A V130003_04760 PF03884 DNA gyrase inhibitor YacG V130003_04770 PF07072 Cell division protein V130003_04780 PF01121 Dephospho-CoA kinase V130003_04790 PF01478 Type IV leader peptidase family V130003_04790 PF06750 Bacterial Peptidase A24 N-terminal domain V130003_04800 PF00482 Type II secretion system (T2SS), protein F V130003_04810 PF00437 Type II/IV secretion system protein V130003_04810 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain V130003_04820 PF07963 Prokaryotic N-terminal methylation motif V130003_04820 PF00114 Pilin (bacterial filament) V130003_04830 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain V130003_04830 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain V130003_04840 PF01510 N-acetylmuramoyl-L-alanine amidase V130003_04850 PF00258 Flavodoxin V130003_04860 PF02899 Phage integrase, N-terminal SAM-like domain V130003_04860 PF00589 Phage integrase family V130003_04870 PF10411 Disulfide bond isomerase protein N-terminus V130003_04870 PF13098 Thioredoxin-like domain V130003_04880 PF01368 DHH family V130003_04880 PF02272 DHHA1 domain V130003_04880 PF17768 RecJ OB domain V130003_04890 PF17768 RecJ OB domain V130003_04890 PF02272 DHHA1 domain V130003_04890 PF01368 DHH family V130003_04900 PF02872 5'-nucleotidase, C-terminal domain V130003_04900 PF00149 Calcineurin-like phosphoesterase V130003_04910 PF07729 FCD domain V130003_04910 PF00392 Bacterial regulatory proteins, gntR family V130003_04920 PF17831 Pyruvate dehydrogenase E1 component middle domain V130003_04920 PF00456 Transketolase, thiamine diphosphate binding domain V130003_04930 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V130003_04930 PF00364 Biotin-requiring enzyme V130003_04930 PF02817 e3 binding domain V130003_04940 PF07992 Pyridine nucleotide-disulphide oxidoreductase V130003_04940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V130003_04950 PF01795 MraW methylase family V130003_04960 PF04999 Cell division protein FtsL V130003_04970 PF03717 Penicillin-binding Protein dimerisation domain V130003_04970 PF00905 Penicillin binding protein transpeptidase domain V130003_04980 PF01225 Mur ligase family, catalytic domain V130003_04980 PF02875 Mur ligase family, glutamate ligase domain V130003_04980 PF08245 Mur ligase middle domain V130003_04990 PF08245 Mur ligase middle domain V130003_04990 PF02875 Mur ligase family, glutamate ligase domain V130003_04990 PF01225 Mur ligase family, catalytic domain V130003_05000 PF00953 Glycosyl transferase family 4 V130003_05000 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 V130003_05010 PF02875 Mur ligase family, glutamate ligase domain V130003_05010 PF08245 Mur ligase middle domain V130003_05020 PF01098 Cell cycle protein V130003_05030 PF03033 Glycosyltransferase family 28 N-terminal domain V130003_05030 PF04101 Glycosyltransferase family 28 C-terminal domain V130003_05040 PF08245 Mur ligase middle domain V130003_05040 PF01225 Mur ligase family, catalytic domain V130003_05040 PF02875 Mur ligase family, glutamate ligase domain V130003_05050 PF03799 Cell division protein FtsQ V130003_05050 PF08478 POTRA domain, FtsQ-type V130003_05060 PF02491 SHS2 domain inserted in FTSA V130003_05070 PF12327 FtsZ family, C-terminal domain V130003_05070 PF00091 Tubulin/FtsZ family, GTPase domain V130003_05080 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase V130003_05100 PF07516 SecA Wing and Scaffold domain V130003_05100 PF01043 SecA preprotein cross-linking domain V130003_05100 PF07517 SecA DEAD-like domain V130003_05100 PF02810 SEC-C motif V130003_05110 PF00293 NUDIX domain V130003_05120 PF05173 Dihydrodipicolinate reductase, C-terminus V130003_05120 PF01113 Dihydrodipicolinate reductase, N-terminus V130003_05140 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain V130003_05140 PF00117 Glutamine amidotransferase class-I V130003_05150 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V130003_05150 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain V130003_05150 PF02142 MGS-like domain V130003_05180 PF00665 Integrase core domain V130003_05180 PF13333 Integrase core domain V130003_05180 PF13276 HTH-like domain V130003_05190 PF01527 Transposase V130003_05210 PF01925 Sulfite exporter TauE/SafE V130003_05220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_05220 PF03466 LysR substrate binding domain V130003_05230 PF03458 UPF0126 domain V130003_05240 PF01497 Periplasmic binding protein V130003_05260 PF01048 Phosphorylase superfamily V130003_05280 PF07992 Pyridine nucleotide-disulphide oxidoreductase V130003_05280 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V130003_05290 PF01493 GXGXG motif V130003_05290 PF00310 Glutamine amidotransferases class-II V130003_05290 PF01645 Conserved region in glutamate synthase V130003_05290 PF04898 Glutamate synthase central domain V130003_05300 PF07992 Pyridine nucleotide-disulphide oxidoreductase V130003_05300 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V130003_05310 PF04898 Glutamate synthase central domain V130003_05310 PF00310 Glutamine amidotransferases class-II V130003_05310 PF01493 GXGXG motif V130003_05310 PF01645 Conserved region in glutamate synthase V130003_05320 PF04055 Radical SAM superfamily V130003_05320 PF16199 Radical_SAM C-terminal domain V130003_05330 PF00990 Diguanylate cyclase, GGDEF domain V130003_05330 PF00563 EAL domain V130003_05330 PF00360 Phytochrome region V130003_05330 PF01590 GAF domain V130003_05340 PF00989 PAS fold V130003_05340 PF00512 His Kinase A (phospho-acceptor) domain V130003_05340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_05340 PF01627 Hpt domain V130003_05340 PF00072 Response regulator receiver domain V130003_05340 PF18415 Histidine kinase receptor ArcB trans-membrane domain V130003_05350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_05350 PF18415 Histidine kinase receptor ArcB trans-membrane domain V130003_05350 PF01627 Hpt domain V130003_05350 PF00072 Response regulator receiver domain V130003_05350 PF00512 His Kinase A (phospho-acceptor) domain V130003_05350 PF00989 PAS fold V130003_05360 PF00072 Response regulator receiver domain V130003_05360 PF00486 Transcriptional regulatory protein, C terminal V130003_05380 PF03737 Aldolase/RraA V130003_05400 PF03447 Homoserine dehydrogenase, NAD binding domain V130003_05400 PF00742 Homoserine dehydrogenase V130003_05400 PF01842 ACT domain V130003_05400 PF13840 ACT domain V130003_05400 PF00696 Amino acid kinase family V130003_05410 PF08544 GHMP kinases C terminal V130003_05410 PF00288 GHMP kinases N terminal domain V130003_05420 PF00291 Pyridoxal-phosphate dependent enzyme V130003_05420 PF14821 Threonine synthase N terminus V130003_05430 PF01228 Glycine radical V130003_05440 PF01261 Xylose isomerase-like TIM barrel V130003_05450 PF03167 Uracil DNA glycosylase superfamily V130003_05480 PF01235 Sodium:alanine symporter family V130003_05490 PF03883 Peroxide stress protein YaaA V130003_05510 PF01026 TatD related DNase V130003_05520 PF01773 Na+ dependent nucleoside transporter N-terminus V130003_05520 PF07662 Na+ dependent nucleoside transporter C-terminus V130003_05520 PF07670 Nucleoside recognition V130003_05530 PF01791 DeoC/LacD family aldolase V130003_05540 PF02885 Glycosyl transferase family, helical bundle domain V130003_05540 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain V130003_05540 PF00591 Glycosyl transferase family, a/b domain V130003_05550 PF01676 Metalloenzyme superfamily V130003_05560 PF01048 Phosphorylase superfamily V130003_05580 PF18429 Domain of unknown function (DUF5609) V130003_05600 PF18073 Rubredoxin metal binding domain V130003_05610 PF03764 Elongation factor G, domain IV V130003_05610 PF00679 Elongation factor G C-terminus V130003_05610 PF14492 Elongation Factor G, domain II V130003_05610 PF00009 Elongation factor Tu GTP binding domain V130003_05610 PF03144 Elongation factor Tu domain 2 V130003_05620 PF00501 AMP-binding enzyme V130003_05630 PF00072 Response regulator receiver domain V130003_05660 PF02837 Glycosyl hydrolases family 2, sugar binding domain V130003_05660 PF02929 Beta galactosidase small chain V130003_05660 PF02836 Glycosyl hydrolases family 2, TIM barrel domain V130003_05660 PF16353 Domain of unknown function(DUF4981) V130003_05660 PF00703 Glycosyl hydrolases family 2 V130003_05670 PF00356 Bacterial regulatory proteins, lacI family V130003_05680 PF01588 Putative tRNA binding domain V130003_05700 PF01544 CorA-like Mg2+ transporter protein V130003_05710 PF08443 RimK-like ATP-grasp domain V130003_05710 PF18030 RimK PreATP-grasp domain V130003_05710 PF02080 TrkA-C domain V130003_05730 PF00583 Acetyltransferase (GNAT) family V130003_05750 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle V130003_05750 PF14602 Hexapeptide repeat of succinyl-transferase V130003_05760 PF07130 YebG protein V130003_05790 PF17946 RecC C-terminal domain V130003_05800 PF12705 PD-(D/E)XK nuclease superfamily V130003_05800 PF00580 UvrD/REP helicase N-terminal domain V130003_05800 PF13361 UvrD-like helicase C-terminal domain V130003_05810 PF13538 UvrD-like helicase C-terminal domain V130003_05830 PF00583 Acetyltransferase (GNAT) family V130003_05830 PF00696 Amino acid kinase family V130003_05850 PF06725 3D domain V130003_05850 PF03562 MltA specific insert domain V130003_05860 PF00899 ThiF family V130003_05870 PF02657 Fe-S metabolism associated domain V130003_05880 PF00266 Aminotransferase class-V V130003_05900 PF02558 Ketopantoate reductase PanE/ApbA V130003_05900 PF08546 Ketopantoate reductase PanE/ApbA C terminal V130003_05910 PF03502 Nucleoside-specific channel-forming protein, Tsx V130003_05930 PF04542 Sigma-70 region 2 V130003_05930 PF04545 Sigma-70, region 4 V130003_05950 PF07690 Major Facilitator Superfamily V130003_05960 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V130003_05980 PF05175 Methyltransferase small domain V130003_05990 PF01722 BolA-like protein V130003_06000 PF11973 NQRA C-terminal domain V130003_06000 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) V130003_06010 PF03116 NQR2, RnfD, RnfE family V130003_06020 PF04205 FMN-binding domain V130003_06030 PF02508 Rnf-Nqr subunit, membrane protein V130003_06040 PF02508 Rnf-Nqr subunit, membrane protein V130003_06050 PF00175 Oxidoreductase NAD-binding domain V130003_06050 PF00111 2Fe-2S iron-sulfur cluster binding domain V130003_06050 PF00970 Oxidoreductase FAD-binding domain V130003_06060 PF02424 ApbE family V130003_06080 PF11798 IMS family HHH motif V130003_06080 PF00817 impB/mucB/samB family V130003_06100 PF17158 Membrane-associated sensor, integral membrane domain V130003_06100 PF00990 Diguanylate cyclase, GGDEF domain V130003_06110 PF00209 Sodium:neurotransmitter symporter family V130003_06120 PF13006 Insertion element 4 transposase N-terminal V130003_06120 PF01609 Transposase DDE domain V130003_06150 PF08443 RimK-like ATP-grasp domain V130003_06150 PF18030 RimK PreATP-grasp domain V130003_06160 PF18030 RimK PreATP-grasp domain V130003_06160 PF08443 RimK-like ATP-grasp domain V130003_06170 PF01546 Peptidase family M20/M25/M40 V130003_06170 PF07687 Peptidase dimerisation domain V130003_06180 PF00860 Permease family V130003_06190 PF00156 Phosphoribosyl transferase domain V130003_06200 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) V130003_06210 PF07417 Sigma factor-binding transcriptional regulator Crl V130003_06220 PF00696 Amino acid kinase family V130003_06220 PF01472 PUA domain V130003_06230 PF00696 Amino acid kinase family V130003_06230 PF01472 PUA domain V130003_06240 PF00171 Aldehyde dehydrogenase family V130003_06250 PF03477 ATP cone domain V130003_06260 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V130003_06260 PF01872 RibD C-terminal domain V130003_06270 PF00677 Lumazine binding domain V130003_06280 PF00925 GTP cyclohydrolase II V130003_06280 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V130003_06290 PF00885 6,7-dimethyl-8-ribityllumazine synthase V130003_06300 PF01029 NusB family V130003_06310 PF00586 AIR synthase related protein, N-terminal domain V130003_06310 PF02769 AIR synthase related protein, C-terminal domain V130003_06320 PF04608 Phosphatidylglycerophosphatase A V130003_06330 PF11944 Protein of unknown function (DUF3461) V130003_06340 PF08335 GlnD PII-uridylyltransferase V130003_06340 PF01966 HD domain V130003_06340 PF01909 Nucleotidyltransferase domain V130003_06350 PF00557 Metallopeptidase family M24 V130003_06360 PF00318 Ribosomal protein S2 V130003_06370 PF00889 Elongation factor TS V130003_06380 PF00696 Amino acid kinase family V130003_06390 PF01765 Ribosome recycling factor V130003_06400 PF01255 Putative undecaprenyl diphosphate synthase V130003_06420 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase V130003_06420 PF13288 DXP reductoisomerase C-terminal domain V130003_06420 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain V130003_06430 PF17820 PDZ domain V130003_06430 PF02163 Peptidase family M50 V130003_06440 PF07244 Surface antigen variable number repeat V130003_06440 PF01103 Surface antigen V130003_06450 PF03938 Outer membrane protein (OmpH-like) V130003_06460 PF00132 Bacterial transferase hexapeptide (six repeats) V130003_06460 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD V130003_06470 PF07977 FabA-like domain V130003_06480 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 V130003_06480 PF00132 Bacterial transferase hexapeptide (six repeats) V130003_06490 PF02684 Lipid-A-disaccharide synthetase V130003_06500 PF01351 Ribonuclease HII V130003_06510 PF07733 Bacterial DNA polymerase III alpha NTPase domain V130003_06510 PF17657 Bacterial DNA polymerase III alpha subunit finger domain V130003_06510 PF14579 Helix-hairpin-helix motif V130003_06510 PF02811 PHP domain V130003_06510 PF01336 OB-fold nucleic acid binding domain V130003_06520 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit V130003_06530 PF01171 PP-loop family V130003_06530 PF11734 TilS substrate C-terminal domain V130003_06530 PF09179 TilS substrate binding domain V130003_06540 PF01171 PP-loop family V130003_06540 PF09179 TilS substrate binding domain V130003_06540 PF11734 TilS substrate C-terminal domain V130003_06550 PF00034 Cytochrome c V130003_06560 PF05870 Phenolic acid decarboxylase (PAD) V130003_06570 PF00543 Nitrogen regulatory protein P-II V130003_06580 PF03372 Endonuclease/Exonuclease/phosphatase family V130003_06590 PF01476 LysM domain V130003_06590 PF01464 Transglycosylase SLT domain V130003_06600 PF16123 Hydroxyacylglutathione hydrolase C-terminus V130003_06600 PF00753 Metallo-beta-lactamase superfamily V130003_06610 PF08241 Methyltransferase domain V130003_06620 PF00075 RNase H V130003_06630 PF00929 Exonuclease V130003_06650 PF02770 Acyl-CoA dehydrogenase, middle domain V130003_06650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V130003_06650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V130003_06650 PF09317 Domain of unknown function (DUF1974) V130003_06660 PF13580 SIS domain V130003_06670 PF13230 Glutamine amidotransferases class-II V130003_06680 PF00551 Formyl transferase V130003_06690 PF02769 AIR synthase related protein, C-terminal domain V130003_06690 PF00586 AIR synthase related protein, N-terminal domain V130003_06710 PF00990 Diguanylate cyclase, GGDEF domain V130003_06720 PF00849 RNA pseudouridylate synthase V130003_06720 PF01479 S4 domain V130003_06730 PF01713 Smr domain V130003_06750 PF02838 Glycosyl hydrolase family 20, domain 2 V130003_06750 PF03173 Putative carbohydrate binding domain V130003_06750 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain V130003_06750 PF00728 Glycosyl hydrolase family 20, catalytic domain V130003_06770 PF00403 Heavy-metal-associated domain V130003_06780 PF00749 tRNA synthetases class I (E and Q), catalytic domain V130003_06790 PF00691 OmpA family V130003_06790 PF01389 OmpA-like transmembrane domain V130003_06810 PF00665 Integrase core domain V130003_06820 PF01527 Transposase V130003_06830 PF07715 TonB-dependent Receptor Plug Domain V130003_06840 PF08021 Siderophore-interacting FAD-binding domain V130003_06840 PF04954 Siderophore-interacting protein V130003_06850 PF08242 Methyltransferase domain V130003_06850 PF00550 Phosphopantetheine attachment site V130003_06850 PF00501 AMP-binding enzyme V130003_06850 PF00668 Condensation domain V130003_06920 PF01584 CheW-like domain V130003_06920 PF00072 Response regulator receiver domain V130003_06930 PF01739 CheR methyltransferase, SAM binding domain V130003_06930 PF03705 CheR methyltransferase, all-alpha domain V130003_06940 PF00460 Flagella basal body rod protein V130003_06950 PF00460 Flagella basal body rod protein V130003_06950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V130003_06960 PF13861 FlgD Tudor-like domain V130003_06960 PF03963 Flagellar hook capping protein - N-terminal region V130003_06960 PF13860 FlgD Ig-like domain V130003_06970 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V130003_06970 PF00460 Flagella basal body rod protein V130003_06970 PF07559 Flagellar basal body protein FlaE V130003_06980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V130003_06980 PF00460 Flagella basal body rod protein V130003_06990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V130003_06990 PF00460 Flagella basal body rod protein V130003_07000 PF02107 Flagellar L-ring protein V130003_07010 PF02119 Flagellar P-ring protein V130003_07020 PF10135 Rod binding protein V130003_07020 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase V130003_07030 PF07196 Flagellin hook IN motif V130003_07030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V130003_07050 PF00700 Bacterial flagellin C-terminal helical region V130003_07050 PF07196 Flagellin hook IN motif V130003_07050 PF00669 Bacterial flagellin N-terminal helical region V130003_07060 PF00700 Bacterial flagellin C-terminal helical region V130003_07060 PF07196 Flagellin hook IN motif V130003_07060 PF00669 Bacterial flagellin N-terminal helical region V130003_07070 PF06071 Protein of unknown function (DUF933) V130003_07070 PF01926 50S ribosome-binding GTPase V130003_07080 PF01195 Peptidyl-tRNA hydrolase V130003_07090 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase V130003_07090 PF14572 Phosphoribosyl synthetase-associated domain V130003_07100 PF00288 GHMP kinases N terminal domain V130003_07100 PF08544 GHMP kinases C terminal V130003_07110 PF03550 Outer membrane lipoprotein LolB V130003_07120 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain V130003_07120 PF01488 Shikimate / quinate 5-dehydrogenase V130003_07120 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain V130003_07130 PF00472 RF-1 domain V130003_07130 PF03462 PCRF domain V130003_07140 PF17827 PrmC N-terminal domain V130003_07140 PF13847 Methyltransferase domain V130003_07150 PF04247 Invasion gene expression up-regulator, SirB V130003_07160 PF13369 Transglutaminase-like superfamily V130003_07170 PF00793 DAHP synthetase I family V130003_07180 PF00149 Calcineurin-like phosphoesterase V130003_07180 PF02872 5'-nucleotidase, C-terminal domain V130003_07190 PF04073 Aminoacyl-tRNA editing domain V130003_07200 PF00860 Permease family V130003_07230 PF03358 NADPH-dependent FMN reductase V130003_07240 PF03960 ArsC family V130003_07250 PF13181 Tetratricopeptide repeat V130003_07250 PF01435 Peptidase family M48 V130003_07270 PF01594 AI-2E family transporter V130003_07280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_07280 PF00672 HAMP domain V130003_07280 PF02743 Cache domain V130003_07290 PF00578 AhpC/TSA family V130003_07310 PF00701 Dihydrodipicolinate synthetase family V130003_07320 PF06804 NlpB/DapX lipoprotein V130003_07340 PF02557 D-alanyl-D-alanine carboxypeptidase V130003_07350 PF01546 Peptidase family M20/M25/M40 V130003_07350 PF07687 Peptidase dimerisation domain V130003_07360 PF03960 ArsC family V130003_07390 PF11143 Protein of unknown function (DUF2919) V130003_07400 PF04261 Dyp-type peroxidase family V130003_07410 PF10282 Lactonase, 7-bladed beta-propeller V130003_07420 PF02838 Glycosyl hydrolase family 20, domain 2 V130003_07420 PF00728 Glycosyl hydrolase family 20, catalytic domain V130003_07430 PF01081 KDPG and KHG aldolase V130003_07440 PF00294 pfkB family carbohydrate kinase V130003_07450 PF00474 Sodium:solute symporter family V130003_07470 PF07969 Amidohydrolase family V130003_07490 PF01380 SIS domain V130003_07490 PF01418 Helix-turn-helix domain, rpiR family V130003_07490 PF02685 Glucokinase V130003_07500 PF00700 Bacterial flagellin C-terminal helical region V130003_07500 PF07196 Flagellin hook IN motif V130003_07500 PF00669 Bacterial flagellin N-terminal helical region V130003_07510 PF00700 Bacterial flagellin C-terminal helical region V130003_07510 PF07196 Flagellin hook IN motif V130003_07510 PF00669 Bacterial flagellin N-terminal helical region V130003_07520 PF00700 Bacterial flagellin C-terminal helical region V130003_07520 PF07196 Flagellin hook IN motif V130003_07520 PF00669 Bacterial flagellin N-terminal helical region V130003_07530 PF03646 FlaG protein V130003_07540 PF02465 Flagellar hook-associated protein 2 N-terminus V130003_07540 PF07196 Flagellin hook IN motif V130003_07540 PF07195 Flagellar hook-associated protein 2 C-terminus V130003_07560 PF02561 Flagellar protein FliS V130003_07570 PF06490 Flagellar regulatory protein FleQ V130003_07570 PF02954 Bacterial regulatory protein, Fis family V130003_07570 PF00158 Sigma-54 interaction domain V130003_07580 PF13188 PAS domain V130003_07580 PF00512 His Kinase A (phospho-acceptor) domain V130003_07580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_07590 PF00158 Sigma-54 interaction domain V130003_07590 PF00072 Response regulator receiver domain V130003_07590 PF02954 Bacterial regulatory protein, Fis family V130003_07600 PF02049 Flagellar hook-basal body complex protein FliE V130003_07610 PF01514 Secretory protein of YscJ/FliF family V130003_07610 PF08345 Flagellar M-ring protein C-terminal V130003_07620 PF01706 FliG C-terminal domain V130003_07620 PF14841 FliG middle domain V130003_07620 PF14842 FliG N-terminal domain V130003_07630 PF02108 Flagellar assembly protein FliH V130003_07640 PF18269 T3SS EscN ATPase C-terminal domain V130003_07640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V130003_07670 PF03748 Flagellar basal body-associated protein FliL V130003_07680 PF02154 Flagellar motor switch protein FliM V130003_07680 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term V130003_07690 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term V130003_07700 PF04347 Flagellar biosynthesis protein, FliO V130003_07710 PF00813 FliP family V130003_07720 PF00813 FliP family V130003_07730 PF01313 Bacterial export proteins, family 3 V130003_07740 PF01311 Bacterial export proteins, family 1 V130003_07750 PF01312 FlhB HrpN YscU SpaS Family V130003_07760 PF01713 Smr domain V130003_07770 PF05175 Methyltransferase small domain V130003_07780 PF01264 Chorismate synthase V130003_07790 PF03458 UPF0126 domain V130003_07800 PF04315 Elongation factor P hydroxylase V130003_07810 PF08891 YfcL protein V130003_07820 PF03358 NADPH-dependent FMN reductase V130003_07830 PF01266 FAD dependent oxidoreductase V130003_07830 PF05430 S-adenosyl-L-methionine-dependent methyltransferase V130003_07840 PF00109 Beta-ketoacyl synthase, N-terminal domain V130003_07840 PF02801 Beta-ketoacyl synthase, C-terminal domain V130003_07850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V130003_07850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V130003_07850 PF11890 Domain of unknown function (DUF3410) V130003_07860 PF01118 Semialdehyde dehydrogenase, NAD binding domain V130003_07860 PF02774 Semialdehyde dehydrogenase, dimerisation domain V130003_07870 PF01475 Ferric uptake regulator family V130003_07890 PF03466 LysR substrate binding domain V130003_07890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_07900 PF03788 LrgA family V130003_07910 PF04172 LrgB-like family V130003_07920 PF00258 Flavodoxin V130003_07940 PF12697 Alpha/beta hydrolase family V130003_07950 PF17206 SeqA protein N-terminal domain V130003_07950 PF03925 SeqA protein C-terminal domain V130003_07960 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V130003_07960 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V130003_07960 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V130003_07960 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V130003_07980 PF01784 NIF3 (NGG1p interacting factor 3) V130003_07990 PF00285 Citrate synthase, C-terminal domain V130003_08010 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit V130003_08020 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit V130003_08030 PF02910 Fumarate reductase flavoprotein C-term V130003_08030 PF00890 FAD binding domain V130003_08040 PF13085 2Fe-2S iron-sulfur cluster binding domain V130003_08050 PF16078 2-oxoglutarate dehydrogenase N-terminus V130003_08050 PF00676 Dehydrogenase E1 component V130003_08050 PF16870 2-oxoglutarate dehydrogenase C-terminal V130003_08050 PF02779 Transketolase, pyrimidine binding domain V130003_08060 PF02817 e3 binding domain V130003_08060 PF00364 Biotin-requiring enzyme V130003_08060 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V130003_08070 PF00549 CoA-ligase V130003_08070 PF08442 ATP-grasp domain V130003_08080 PF00549 CoA-ligase V130003_08080 PF08442 ATP-grasp domain V130003_08090 PF00549 CoA-ligase V130003_08090 PF02629 CoA binding domain V130003_08100 PF00950 ABC 3 transport family V130003_08110 PF00005 ABC transporter V130003_08120 PF01297 Zinc-uptake complex component A periplasmic V130003_08130 PF12833 Helix-turn-helix domain V130003_08130 PF02311 AraC-like ligand binding domain V130003_08150 PF04023 FeoA domain V130003_08160 PF07670 Nucleoside recognition V130003_08160 PF07664 Ferrous iron transport protein B C terminus V130003_08160 PF02421 Ferrous iron transport protein B V130003_08190 PF05746 DALR anticodon binding domain V130003_08190 PF00750 tRNA synthetases class I (R) V130003_08190 PF03485 Arginyl tRNA synthetase N terminal domain V130003_08210 PF00675 Insulinase (Peptidase family M16) V130003_08210 PF05193 Peptidase M16 inactive domain V130003_08220 PF00300 Histidine phosphatase superfamily (branch 1) V130003_08230 PF00771 FHIPEP family V130003_08240 PF00448 SRP54-type protein, GTPase domain V130003_08250 PF10609 NUBPL iron-transfer P-loop NTPase V130003_08260 PF04542 Sigma-70 region 2 V130003_08260 PF04545 Sigma-70, region 4 V130003_08260 PF04539 Sigma-70 region 3 V130003_08270 PF00072 Response regulator receiver domain V130003_08280 PF04344 Chemotaxis phosphatase, CheZ V130003_08290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_08290 PF02895 Signal transducing histidine kinase, homodimeric domain V130003_08290 PF01584 CheW-like domain V130003_08290 PF00072 Response regulator receiver domain V130003_08290 PF01627 Hpt domain V130003_08300 PF01339 CheB methylesterase V130003_08300 PF00072 Response regulator receiver domain V130003_08310 PF13614 AAA domain V130003_08330 PF01584 CheW-like domain V130003_08350 PF00005 ABC transporter V130003_08360 PF03379 CcmB protein V130003_08370 PF03379 CcmB protein V130003_08380 PF01578 Cytochrome C assembly protein V130003_08390 PF04995 Heme exporter protein D (CcmD) V130003_08400 PF03100 CcmE V130003_08410 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal V130003_08410 PF01578 Cytochrome C assembly protein V130003_08420 PF08534 Redoxin V130003_08430 PF03918 Cytochrome C biogenesis protein V130003_08450 PF04333 MlaA lipoprotein V130003_08480 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V130003_08480 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V130003_08490 PF00462 Glutaredoxin V130003_08500 PF01751 Toprim domain V130003_08500 PF01131 DNA topoisomerase V130003_08510 PF00850 Histone deacetylase domain V130003_08520 PF11893 Domain of unknown function (DUF3413) V130003_08520 PF00884 Sulfatase V130003_08530 PF07208 Protein of unknown function (DUF1414) V130003_08540 PF04245 37-kD nucleoid-associated bacterial protein V130003_08550 PF01527 Transposase V130003_08560 PF00665 Integrase core domain V130003_08580 PF03553 Na+/H+ antiporter family V130003_08590 PF02774 Semialdehyde dehydrogenase, dimerisation domain V130003_08590 PF01118 Semialdehyde dehydrogenase, NAD binding domain V130003_08600 PF01914 MarC family integral membrane protein V130003_08610 PF00171 Aldehyde dehydrogenase family V130003_08610 PF00465 Iron-containing alcohol dehydrogenase V130003_08630 PF01740 STAS domain V130003_08630 PF00916 Sulfate permease family V130003_08640 PF12111 Polyribonucleotide phosphorylase C terminal V130003_08640 PF10150 Ribonuclease E/G family V130003_08640 PF00575 S1 RNA binding domain V130003_08650 PF01479 S4 domain V130003_08650 PF00849 RNA pseudouridylate synthase V130003_08660 PF02545 Maf-like protein V130003_08670 PF02620 Large ribosomal RNA subunit accumulation protein YceD V130003_08680 PF01783 Ribosomal L32p protein family V130003_08690 PF02504 Fatty acid synthesis protein V130003_08700 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V130003_08700 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V130003_08710 PF00698 Acyl transferase domain V130003_08730 PF00550 Phosphopantetheine attachment site V130003_08740 PF02801 Beta-ketoacyl synthase, C-terminal domain V130003_08740 PF00109 Beta-ketoacyl synthase, N-terminal domain V130003_08750 PF01063 Amino-transferase class IV V130003_08760 PF02618 YceG-like family V130003_08770 PF02223 Thymidylate kinase V130003_08780 PF09115 DNA polymerase III, delta subunit, C terminal V130003_08790 PF01026 TatD related DNase V130003_08800 PF02378 Phosphotransferase system, EIIC V130003_08800 PF00367 phosphotransferase system, EIIB V130003_08810 PF00209 Sodium:neurotransmitter symporter family V130003_08830 PF01734 Patatin-like phospholipase V130003_08840 PF02887 Pyruvate kinase, alpha/beta domain V130003_08840 PF00224 Pyruvate kinase, barrel domain V130003_08850 PF00480 ROK family V130003_08860 PF01584 CheW-like domain V130003_08860 PF00072 Response regulator receiver domain V130003_08890 PF13847 Methyltransferase domain V130003_08910 PF01263 Aldose 1-epimerase V130003_08920 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V130003_08920 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V130003_08930 PF01641 SelR domain V130003_08950 PF07023 Protein of unknown function (DUF1315) V130003_08960 PF00710 Asparaginase, N-terminal V130003_08960 PF17763 Glutaminase/Asparaginase C-terminal domain V130003_08970 PF01343 Peptidase family S49 V130003_08980 PF01343 Peptidase family S49 V130003_08990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V130003_08990 PF07992 Pyridine nucleotide-disulphide oxidoreductase V130003_09000 PF01842 ACT domain V130003_09000 PF00551 Formyl transferase V130003_09020 PF04851 Type III restriction enzyme, res subunit V130003_09020 PF13307 Helicase C-terminal domain V130003_09030 PF00814 Glycoprotease family V130003_09060 PF00561 alpha/beta hydrolase fold V130003_09070 PF00501 AMP-binding enzyme V130003_09070 PF13193 AMP-binding enzyme C-terminal domain V130003_09080 PF01612 3'-5' exonuclease V130003_09080 PF00570 HRDC domain V130003_09110 PF13286 Phosphohydrolase-associated domain V130003_09110 PF01966 HD domain V130003_09130 PF00155 Aminotransferase class I and II V130003_09140 PF00425 chorismate binding enzyme V130003_09150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V130003_09150 PF16582 Middle domain of thiamine pyrophosphate V130003_09150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V130003_09160 PF12697 Alpha/beta hydrolase family V130003_09170 PF00378 Enoyl-CoA hydratase/isomerase V130003_09180 PF13378 Enolase C-terminal domain-like V130003_09190 PF13193 AMP-binding enzyme C-terminal domain V130003_09190 PF00501 AMP-binding enzyme V130003_09200 PF03594 Benzoate membrane transport protein V130003_09210 PF07690 Major Facilitator Superfamily V130003_09250 PF04170 NlpE N-terminal domain V130003_09260 PF03776 Septum formation topological specificity factor MinE V130003_09270 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain V130003_09280 PF03775 Septum formation inhibitor MinC, C-terminal domain V130003_09280 PF05209 Septum formation inhibitor MinC, N-terminal domain V130003_09290 PF05166 YcgL domain V130003_09300 PF13406 Transglycosylase SLT domain V130003_09310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_09310 PF03466 LysR substrate binding domain V130003_09320 PF01773 Na+ dependent nucleoside transporter N-terminus V130003_09320 PF07662 Na+ dependent nucleoside transporter C-terminus V130003_09320 PF07670 Nucleoside recognition V130003_09330 PF03264 NapC/NirT cytochrome c family, N-terminal region V130003_09340 PF00384 Molybdopterin oxidoreductase V130003_09340 PF18364 Molybdopterin oxidoreductase N-terminal domain V130003_09340 PF01568 Molydopterin dinucleotide binding domain V130003_09360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_09360 PF03466 LysR substrate binding domain V130003_09370 PF01494 FAD binding domain V130003_09380 PF02668 Taurine catabolism dioxygenase TauD, TfdA family V130003_09390 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain V130003_09390 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain V130003_09590 PF03707 Bacterial signalling protein N terminal repeat V130003_09590 PF00563 EAL domain V130003_09590 PF00990 Diguanylate cyclase, GGDEF domain V130003_09630 PF02696 Uncharacterized ACR, YdiU/UPF0061 family V130003_09640 PF03480 Bacterial extracellular solute-binding protein, family 7 V130003_09650 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component V130003_09660 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component V130003_09670 PF02954 Bacterial regulatory protein, Fis family V130003_09670 PF00072 Response regulator receiver domain V130003_09670 PF00158 Sigma-54 interaction domain V130003_09680 PF02743 Cache domain V130003_09680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_09680 PF00512 His Kinase A (phospho-acceptor) domain V130003_09690 PF05698 Bacterial trigger factor protein (TF) C-terminus V130003_09690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V130003_09690 PF05697 Bacterial trigger factor protein (TF) V130003_09700 PF00574 Clp protease V130003_09710 PF06689 ClpX C4-type zinc finger V130003_09710 PF07724 AAA domain (Cdc48 subfamily) V130003_09710 PF10431 C-terminal, D2-small domain, of ClpB protein V130003_09720 PF00004 ATPase family associated with various cellular activities (AAA) V130003_09720 PF05362 Lon protease (S16) C-terminal proteolytic domain V130003_09720 PF02190 ATP-dependent protease La (LON) substrate-binding domain V130003_09730 PF00216 Bacterial DNA-binding protein V130003_09740 PF13145 PPIC-type PPIASE domain V130003_09760 PF02224 Cytidylate kinase V130003_09770 PF00575 S1 RNA binding domain V130003_09780 PF00216 Bacterial DNA-binding protein V130003_09790 PF06305 Lipopolysaccharide assembly protein A domain V130003_09800 PF18073 Rubredoxin metal binding domain V130003_09810 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family V130003_09820 PF00528 Binding-protein-dependent transport system inner membrane component V130003_09830 PF00528 Binding-protein-dependent transport system inner membrane component V130003_09830 PF12911 N-terminal TM domain of oligopeptide transport permease C V130003_09840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V130003_09850 PF00005 ABC transporter V130003_09850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V130003_09860 PF00005 ABC transporter V130003_09860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V130003_09900 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) V130003_09920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_09920 PF03466 LysR substrate binding domain V130003_09940 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V130003_09940 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V130003_09950 PF01037 Lrp/AsnC ligand binding domain V130003_09960 PF13491 4TM region of DNA translocase FtsK/SpoIIIE V130003_09960 PF17854 FtsK alpha domain V130003_09960 PF09397 Ftsk gamma domain V130003_09960 PF01580 FtsK/SpoIIIE family V130003_09970 PF02600 Disulfide bond formation protein DsbB V130003_09980 PF06450 Bacterial Na+/H+ antiporter B (NhaB) V130003_09990 PF07840 FadR C-terminal domain V130003_09990 PF00392 Bacterial regulatory proteins, gntR family V130003_10010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_10010 PF00672 HAMP domain V130003_10020 PF01230 HIT domain V130003_10050 PF08139 Prokaryotic membrane lipoprotein lipid attachment site V130003_10050 PF13036 Peptidoglycan-synthase activator LpoB V130003_10070 PF05728 Uncharacterised protein family (UPF0227) V130003_10080 PF07992 Pyridine nucleotide-disulphide oxidoreductase V130003_10100 PF16458 Beta-prism lectin V130003_10100 PF12563 Hemolytic toxin N terminal V130003_10100 PF07968 Leukocidin/Hemolysin toxin family V130003_10120 PF03461 TRCF domain V130003_10120 PF00270 DEAD/DEAH box helicase V130003_10120 PF00271 Helicase conserved C-terminal domain V130003_10120 PF17757 UvrB interaction domain V130003_10120 PF02559 CarD-like/TRCF domain V130003_10130 PF03461 TRCF domain V130003_10130 PF17757 UvrB interaction domain V130003_10130 PF02559 CarD-like/TRCF domain V130003_10130 PF00270 DEAD/DEAH box helicase V130003_10130 PF00271 Helicase conserved C-terminal domain V130003_10150 PF02687 FtsX-like permease family V130003_10150 PF12704 MacB-like periplasmic core domain V130003_10160 PF00005 ABC transporter V130003_10170 PF02687 FtsX-like permease family V130003_10170 PF12704 MacB-like periplasmic core domain V130003_10190 PF13567 Domain of unknown function (DUF4131) V130003_10190 PF00753 Metallo-beta-lactamase superfamily V130003_10190 PF03772 Competence protein V130003_10200 PF00005 ABC transporter V130003_10200 PF00664 ABC transporter transmembrane region V130003_10210 PF02606 Tetraacyldisaccharide-1-P 4'-kinase V130003_10220 PF03966 Trm112p-like protein V130003_10230 PF02348 Cytidylyltransferase V130003_10240 PF01797 Transposase IS200 like V130003_10250 PF04293 SpoVR like protein V130003_10260 PF04285 Protein of unknown function (DUF444) V130003_10270 PF06798 PrkA serine protein kinase C-terminal domain V130003_10270 PF08298 PrkA AAA domain V130003_10280 PF03887 YfbU domain V130003_10310 PF04055 Radical SAM superfamily V130003_10320 PF00672 HAMP domain V130003_10320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_10320 PF12729 Four helix bundle sensory module for signal transduction V130003_10340 PF01228 Glycine radical V130003_10340 PF02901 Pyruvate formate lyase-like V130003_10380 PF00005 ABC transporter V130003_10390 PF00497 Bacterial extracellular solute-binding proteins, family 3 V130003_10400 PF00528 Binding-protein-dependent transport system inner membrane component V130003_10410 PF00528 Binding-protein-dependent transport system inner membrane component V130003_10420 PF03372 Endonuclease/Exonuclease/phosphatase family V130003_10430 PF00672 HAMP domain V130003_10430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_10440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_10440 PF00672 HAMP domain V130003_10440 PF12729 Four helix bundle sensory module for signal transduction V130003_10450 PF10689 Protein of unknown function (DUF2496) V130003_10460 PF07445 Primosomal replication protein priC V130003_10470 PF01925 Sulfite exporter TauE/SafE V130003_10480 PF06733 DEAD_2 V130003_10480 PF13307 Helicase C-terminal domain V130003_10490 PF13609 Gram-negative porin V130003_10500 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) V130003_10510 PF02810 SEC-C motif V130003_10520 PF08668 HDOD domain V130003_10520 PF00563 EAL domain V130003_10530 PF00149 Calcineurin-like phosphoesterase V130003_10540 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V130003_10550 PF01406 tRNA synthetases class I (C) catalytic domain V130003_10550 PF09190 DALR domain V130003_10560 PF02075 Crossover junction endodeoxyribonuclease RuvC V130003_10570 PF01330 RuvA N terminal domain V130003_10570 PF07499 RuvA, C-terminal domain V130003_10580 PF17864 RuvB AAA lid domain V130003_10580 PF05491 RuvB C-terminal winged helix domain V130003_10580 PF05496 Holliday junction DNA helicase RuvB P-loop domain V130003_10600 PF01654 Cytochrome bd terminal oxidase subunit I V130003_10610 PF02322 Cytochrome bd terminal oxidase subunit II V130003_10630 PF03061 Thioesterase superfamily V130003_10640 PF01618 MotA/TolQ/ExbB proton channel family V130003_10650 PF02472 Biopolymer transport protein ExbD/TolR V130003_10670 PF07676 WD40-like Beta Propeller Repeat V130003_10670 PF04052 TolB amino-terminal domain V130003_10680 PF00691 OmpA family V130003_10700 PF02445 Quinolinate synthetase A protein V130003_10720 PF09308 LuxQ, periplasmic V130003_10720 PF00072 Response regulator receiver domain V130003_10720 PF00512 His Kinase A (phospho-acceptor) domain V130003_10720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_10730 PF06610 L-alanine exporter V130003_10740 PF00171 Aldehyde dehydrogenase family V130003_10760 PF00158 Sigma-54 interaction domain V130003_10760 PF02954 Bacterial regulatory protein, Fis family V130003_10760 PF01590 GAF domain V130003_10770 PF09905 DNA-binding protein VF530 V130003_10790 PF03441 FAD binding domain of DNA photolyase V130003_10790 PF00875 DNA photolyase V130003_10800 PF03441 FAD binding domain of DNA photolyase V130003_10800 PF00875 DNA photolyase V130003_10840 PF01344 Kelch motif V130003_10850 PF07646 Kelch motif V130003_10860 PF07646 Kelch motif V130003_10880 PF11999 Protein of unknown function (DUF3494) V130003_10880 PF02368 Bacterial Ig-like domain (group 2) V130003_10890 PF13358 DDE superfamily endonuclease V130003_10940 PF08386 TAP-like protein V130003_10940 PF00561 alpha/beta hydrolase fold V130003_10960 PF03347 Vibrio thermostable direct hemolysin V130003_10970 PF13322 Domain of unknown function (DUF4092) V130003_10970 PF13402 Peptidase M60, enhancin and enhancin-like V130003_10970 PF17291 N-terminal domain of M60-like peptidases V130003_11030 PF01797 Transposase IS200 like V130003_11210 PF00771 FHIPEP family V130003_11220 PF01312 FlhB HrpN YscU SpaS Family V130003_11230 PF00691 OmpA family V130003_11280 PF00486 Transcriptional regulatory protein, C terminal V130003_11300 PF00813 FliP family V130003_11330 PF00263 Bacterial type II and III secretion system protein V130003_11330 PF03958 Bacterial type II/III secretion system short domain V130003_11340 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V130003_11340 PF18269 T3SS EscN ATPase C-terminal domain V130003_11340 PF02874 ATP synthase alpha/beta family, beta-barrel domain V130003_11430 PF09020 YopE, N terminal V130003_11430 PF03545 Yersinia virulence determinant (YopE) V130003_11460 PF00589 Phage integrase family V130003_11460 PF13356 Arm DNA-binding domain V130003_11470 PF00589 Phage integrase family V130003_11470 PF13356 Arm DNA-binding domain V130003_11480 PF00873 AcrB/AcrD/AcrF family V130003_11490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V130003_11510 PF02470 MlaD protein V130003_11520 PF04403 Paraquat-inducible protein A V130003_11540 PF00440 Bacterial regulatory proteins, tetR family V130003_11540 PF08362 YcdC-like protein, C-terminal region V130003_11550 PF00171 Aldehyde dehydrogenase family V130003_11560 PF07383 Protein of unknown function (DUF1496) V130003_11590 PF00440 Bacterial regulatory proteins, tetR family V130003_11590 PF16295 Tetracyclin repressor-like, C-terminal domain V130003_11600 PF09317 Domain of unknown function (DUF1974) V130003_11600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V130003_11600 PF02770 Acyl-CoA dehydrogenase, middle domain V130003_11600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V130003_11610 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V130003_11610 PF12241 Trans-2-enoyl-CoA reductase catalytic region V130003_11610 PF07055 Enoyl reductase FAD binding domain V130003_11620 PF01176 Translation initiation factor 1A / IF-1 V130003_11630 PF04377 Arginine-tRNA-protein transferase, C terminus V130003_11630 PF04376 Arginine-tRNA-protein transferase, N terminus V130003_11640 PF03588 Leucyl/phenylalanyl-tRNA protein transferase V130003_11650 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V130003_11660 PF10692 Protein of unknown function (DUF2498) V130003_11670 PF01751 Toprim domain V130003_11670 PF01131 DNA topoisomerase V130003_11670 PF08272 Topoisomerase I zinc-ribbon-like V130003_11670 PF01396 Topoisomerase DNA binding C4 zinc finger V130003_11680 PF00483 Nucleotidyl transferase V130003_11690 PF08323 Starch synthase catalytic domain V130003_11690 PF00534 Glycosyl transferases group 1 V130003_11730 PF04993 TfoX N-terminal domain V130003_11730 PF04994 TfoX C-terminal domain V130003_11740 PF00356 Bacterial regulatory proteins, lacI family V130003_11750 PF02613 Nitrate reductase delta subunit V130003_11760 PF00072 Response regulator receiver domain V130003_11760 PF00486 Transcriptional regulatory protein, C terminal V130003_11770 PF02698 DUF218 domain V130003_11780 PF13847 Methyltransferase domain V130003_11790 PF03882 MukF winged-helix domain V130003_11790 PF17193 MukF C-terminal domain V130003_11790 PF17192 MukF middle domain V130003_11800 PF04288 MukE-like family V130003_11810 PF04310 MukB N-terminal V130003_11810 PF16330 MukB hinge domain V130003_11820 PF04310 MukB N-terminal V130003_11820 PF16330 MukB hinge domain V130003_11830 PF01037 Lrp/AsnC ligand binding domain V130003_11840 PF01810 LysE type translocator V130003_11850 PF08497 Radical SAM N-terminal V130003_11850 PF11842 Domain of unknown function (DUF3362) V130003_11850 PF04055 Radical SAM superfamily V130003_11860 PF08448 PAS fold V130003_11860 PF08447 PAS fold V130003_11860 PF00990 Diguanylate cyclase, GGDEF domain V130003_11860 PF00563 EAL domain V130003_11870 PF00675 Insulinase (Peptidase family M16) V130003_11870 PF05193 Peptidase M16 inactive domain V130003_11900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_11900 PF03466 LysR substrate binding domain V130003_11910 PF08267 Cobalamin-independent synthase, N-terminal domain V130003_11910 PF01717 Cobalamin-independent synthase, Catalytic domain V130003_11930 PF03795 YCII-related domain V130003_11940 PF03061 Thioesterase superfamily V130003_11950 PF04279 Intracellular septation protein A V130003_11980 PF01370 NAD dependent epimerase/dehydratase family V130003_12000 PF01226 Formate/nitrite transporter V130003_12010 PF06796 Periplasmic nitrate reductase protein NapE V130003_12020 PF03264 NapC/NirT cytochrome c family, N-terminal region V130003_12030 PF01568 Molydopterin dinucleotide binding domain V130003_12030 PF18364 Molybdopterin oxidoreductase N-terminal domain V130003_12030 PF00384 Molybdopterin oxidoreductase V130003_12060 PF01368 DHH family V130003_12060 PF02833 DHHA2 domain V130003_12090 PF00005 ABC transporter V130003_12100 PF00005 ABC transporter V130003_12100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V130003_12110 PF00005 ABC transporter V130003_12110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V130003_12120 PF00528 Binding-protein-dependent transport system inner membrane component V130003_12120 PF12911 N-terminal TM domain of oligopeptide transport permease C V130003_12130 PF00528 Binding-protein-dependent transport system inner membrane component V130003_12140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V130003_12150 PF02954 Bacterial regulatory protein, Fis family V130003_12150 PF00158 Sigma-54 interaction domain V130003_12160 PF04012 PspA/IM30 family V130003_12190 PF00529 HlyD membrane-fusion protein of T1SS V130003_12190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V130003_12200 PF13533 Biotin-lipoyl like V130003_12210 PF00873 AcrB/AcrD/AcrF family V130003_12220 PF03352 Methyladenine glycosylase V130003_12230 PF00582 Universal stress protein family V130003_12240 PF02254 TrkA-N domain V130003_12240 PF02080 TrkA-C domain V130003_12240 PF00999 Sodium/hydrogen exchanger family V130003_12250 PF01053 Cys/Met metabolism PLP-dependent enzyme V130003_12260 PF13396 Phospholipase_D-nuclease N-terminal V130003_12260 PF13091 PLD-like domain V130003_12270 PF00209 Sodium:neurotransmitter symporter family V130003_12280 PF00849 RNA pseudouridylate synthase V130003_12290 PF01066 CDP-alcohol phosphatidyltransferase V130003_12300 PF00005 ABC transporter V130003_12310 PF00528 Binding-protein-dependent transport system inner membrane component V130003_12320 PF13416 Bacterial extracellular solute-binding protein V130003_12340 PF06945 Protein of unknown function (DUF1289) V130003_12370 PF00005 ABC transporter V130003_12380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V130003_12390 PF03222 Tryptophan/tyrosine permease family V130003_12410 PF01769 Divalent cation transporter V130003_12410 PF00571 CBS domain V130003_12410 PF03448 MgtE intracellular N domain V130003_12430 PF00072 Response regulator receiver domain V130003_12430 PF09308 LuxQ, periplasmic V130003_12430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_12430 PF00512 His Kinase A (phospho-acceptor) domain V130003_12440 PF03707 Bacterial signalling protein N terminal repeat V130003_12440 PF00990 Diguanylate cyclase, GGDEF domain V130003_12440 PF00563 EAL domain V130003_12460 PF04151 Bacterial pre-peptidase C-terminal domain V130003_12460 PF01752 Collagenase V130003_12460 PF08453 Peptidase family M9 N-terminal V130003_12480 PF12793 Sugar transport-related sRNA regulator N-term V130003_12480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V130003_12500 PF01527 Transposase V130003_12510 PF13276 HTH-like domain V130003_12510 PF13333 Integrase core domain V130003_12510 PF00665 Integrase core domain V130003_12540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_12540 PF00672 HAMP domain V130003_12540 PF12729 Four helix bundle sensory module for signal transduction V130003_12560 PF00563 EAL domain V130003_12560 PF00360 Phytochrome region V130003_12560 PF01590 GAF domain V130003_12560 PF00990 Diguanylate cyclase, GGDEF domain V130003_12570 PF01386 Ribosomal L25p family V130003_12580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_12590 PF00072 Response regulator receiver domain V130003_12590 PF00486 Transcriptional regulatory protein, C terminal V130003_12610 PF00271 Helicase conserved C-terminal domain V130003_12610 PF04851 Type III restriction enzyme, res subunit V130003_12620 PF00849 RNA pseudouridylate synthase V130003_12620 PF01479 S4 domain V130003_12630 PF07690 Major Facilitator Superfamily V130003_12650 PF11066 Protein of unknown function (DUF2867) V130003_12650 PF13460 NAD(P)H-binding V130003_12660 PF01554 MatE V130003_12680 PF00005 ABC transporter V130003_12690 PF02687 FtsX-like permease family V130003_12690 PF12704 MacB-like periplasmic core domain V130003_12710 PF06965 Na+/H+ antiporter 1 V130003_12720 PF00202 Aminotransferase class-III V130003_12730 PF16653 Saccharopine dehydrogenase C-terminal domain V130003_12730 PF03435 Saccharopine dehydrogenase NADP binding domain V130003_12750 PF05736 OprF membrane domain V130003_12750 PF00691 OmpA family V130003_12760 PF02321 Outer membrane efflux protein V130003_12800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_12800 PF03466 LysR substrate binding domain V130003_12820 PF01863 Protein of unknown function DUF45 V130003_12830 PF05971 RNA methyltransferase V130003_12860 PF04204 Homoserine O-succinyltransferase V130003_12870 PF04204 Homoserine O-succinyltransferase V130003_12910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V130003_12940 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain V130003_12940 PF17203 Single cache domain 3 V130003_12940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_12940 PF00989 PAS fold V130003_12950 PF12431 Transcriptional regulator V130003_12950 PF00072 Response regulator receiver domain V130003_12970 PF00072 Response regulator receiver domain V130003_12970 PF01584 CheW-like domain V130003_13000 PF00990 Diguanylate cyclase, GGDEF domain V130003_13000 PF00072 Response regulator receiver domain V130003_13020 PF07690 Major Facilitator Superfamily V130003_13030 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain V130003_13030 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain V130003_13040 PF00288 GHMP kinases N terminal domain V130003_13040 PF08544 GHMP kinases C terminal V130003_13040 PF10509 Galactokinase galactose-binding signature V130003_13050 PF01263 Aldose 1-epimerase V130003_13060 PF00990 Diguanylate cyclase, GGDEF domain V130003_13080 PF00205 Thiamine pyrophosphate enzyme, central domain V130003_13080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V130003_13080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V130003_13090 PF03306 Alpha-acetolactate decarboxylase V130003_13100 PF03466 LysR substrate binding domain V130003_13100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_13110 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) V130003_13120 PF00361 Proton-conducting membrane transporter V130003_13120 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus V130003_13130 PF03466 LysR substrate binding domain V130003_13130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_13140 PF00501 AMP-binding enzyme V130003_13140 PF13193 AMP-binding enzyme C-terminal domain V130003_13180 PF04266 ASCH domain V130003_13210 PF10415 Fumarase C C-terminus V130003_13210 PF00206 Lyase V130003_13230 PF01654 Cytochrome bd terminal oxidase subunit I V130003_13240 PF02322 Cytochrome bd terminal oxidase subunit II V130003_13250 PF12704 MacB-like periplasmic core domain V130003_13250 PF00005 ABC transporter V130003_13250 PF02687 FtsX-like permease family V130003_13260 PF12704 MacB-like periplasmic core domain V130003_13260 PF02687 FtsX-like permease family V130003_13260 PF00005 ABC transporter V130003_13270 PF12704 MacB-like periplasmic core domain V130003_13270 PF00005 ABC transporter V130003_13270 PF02687 FtsX-like permease family V130003_13290 PF00529 HlyD membrane-fusion protein of T1SS V130003_13310 PF03466 LysR substrate binding domain V130003_13310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_13320 PF00141 Peroxidase V130003_13330 PF00232 Glycosyl hydrolase family 1 V130003_13340 PF00356 Bacterial regulatory proteins, lacI family V130003_13350 PF01042 Endoribonuclease L-PSP V130003_13370 PF03009 Glycerophosphoryl diester phosphodiesterase family V130003_13380 PF00455 DeoR C terminal sensor domain V130003_13380 PF08220 DeoR-like helix-turn-helix domain V130003_13390 PF00005 ABC transporter V130003_13390 PF17912 MalK OB fold domain V130003_13400 PF00528 Binding-protein-dependent transport system inner membrane component V130003_13410 PF00528 Binding-protein-dependent transport system inner membrane component V130003_13420 PF13416 Bacterial extracellular solute-binding protein V130003_13440 PF01618 MotA/TolQ/ExbB proton channel family V130003_13450 PF01618 MotA/TolQ/ExbB proton channel family V130003_13460 PF02472 Biopolymer transport protein ExbD/TolR V130003_13470 PF03544 Gram-negative bacterial TonB protein C-terminal V130003_13490 PF01068 ATP dependent DNA ligase domain V130003_13490 PF14743 DNA ligase OB-like domain V130003_13510 PF01554 MatE V130003_13530 PF03881 Fructosamine kinase V130003_13560 PF12729 Four helix bundle sensory module for signal transduction V130003_13560 PF00672 HAMP domain V130003_13560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_13580 PF03942 DTW domain V130003_13590 PF00480 ROK family V130003_13610 PF00994 Probable molybdopterin binding domain V130003_13610 PF03453 MoeA N-terminal region (domain I and II) V130003_13610 PF03454 MoeA C-terminal region (domain IV) V130003_13620 PF12804 MobA-like NTP transferase domain V130003_13630 PF08402 TOBE domain V130003_13630 PF00005 ABC transporter V130003_13640 PF00528 Binding-protein-dependent transport system inner membrane component V130003_13650 PF12849 PBP superfamily domain V130003_13660 PF02954 Bacterial regulatory protein, Fis family V130003_13660 PF00072 Response regulator receiver domain V130003_13660 PF00158 Sigma-54 interaction domain V130003_13670 PF00989 PAS fold V130003_13670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_13670 PF00512 His Kinase A (phospho-acceptor) domain V130003_13680 PF12848 ABC transporter V130003_13680 PF00005 ABC transporter V130003_13690 PF02634 FdhD/NarQ family V130003_13730 PF02613 Nitrate reductase delta subunit V130003_13750 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V130003_13750 PF00384 Molybdopterin oxidoreductase V130003_13750 PF12838 4Fe-4S dicluster domain V130003_13750 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V130003_13750 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region V130003_13750 PF12838 4Fe-4S dicluster domain V130003_13750 PF01568 Molydopterin dinucleotide binding domain V130003_13750 PF01568 Molydopterin dinucleotide binding domain V130003_13750 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region V130003_13750 PF00384 Molybdopterin oxidoreductase V130003_13760 PF13247 4Fe-4S dicluster domain V130003_13790 PF02146 Sir2 family V130003_13800 PF04461 Protein of unknown function (DUF520) V130003_13810 PF00793 DAHP synthetase I family V130003_13840 PF17783 CvfB-like winged helix domain V130003_13840 PF13509 S1 domain V130003_13850 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF V130003_13850 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF V130003_13850 PF01189 16S rRNA methyltransferase RsmB/F V130003_13860 PF02470 MlaD protein V130003_13870 PF04403 Paraquat-inducible protein A V130003_13880 PF00664 ABC transporter transmembrane region V130003_13880 PF00005 ABC transporter V130003_13890 PF13185 GAF domain V130003_13900 PF04352 ProQ/FINO family V130003_13900 PF17516 ProQ C-terminal domain V130003_13910 PF11818 C-terminal domain of tail specific protease (DUF3340) V130003_13910 PF00595 PDZ domain V130003_13910 PF17804 Tail specific protease N-terminal domain V130003_13910 PF03572 Peptidase family S41 V130003_13930 PF01433 Peptidase family M1 domain V130003_13930 PF17432 Domain of unknown function (DUF3458_C) ARM repeats V130003_13930 PF11940 Domain of unknown function (DUF3458) Ig-like fold V130003_13940 PF05088 Bacterial NAD-glutamate dehydrogenase V130003_13950 PF01180 Dihydroorotate dehydrogenase V130003_13960 PF07126 Cell-division protein ZapC V130003_13980 PF10672 S-adenosylmethionine-dependent methyltransferase V130003_13980 PF02926 THUMP domain V130003_13980 PF01170 Putative RNA methylase family UPF0020 V130003_14000 PF00005 ABC transporter V130003_14000 PF16326 ABC transporter C-terminal domain V130003_14000 PF12848 ABC transporter V130003_14020 PF04957 Ribosome modulation factor V130003_14030 PF07977 FabA-like domain V130003_14040 PF13654 AAA domain V130003_14040 PF05362 Lon protease (S16) C-terminal proteolytic domain V130003_14050 PF17414 MatP C-terminal ribbon-helix-helix domain V130003_14050 PF06303 MatP N-terminal domain V130003_14130 PF01527 Transposase V130003_14140 PF00665 Integrase core domain V130003_14250 PF11713 Peptidase C80 family V130003_14250 PF07634 RtxA repeat V130003_14250 PF11647 Membrane Localization Domain V130003_14250 PF12146 Serine aminopeptidase, S33 V130003_14250 PF16671 Actin cross-linking domain V130003_14280 PF02794 RTX toxin acyltransferase family V130003_14300 PF00664 ABC transporter transmembrane region V130003_14300 PF00005 ABC transporter V130003_14300 PF03412 Peptidase C39 family V130003_14320 PF00664 ABC transporter transmembrane region V130003_14320 PF00005 ABC transporter V130003_14320 PF03412 Peptidase C39 family V130003_14330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_14330 PF09308 LuxQ, periplasmic V130003_14330 PF00512 His Kinase A (phospho-acceptor) domain V130003_14330 PF00072 Response regulator receiver domain V130003_14350 PF00115 Cytochrome C and Quinol oxidase polypeptide I V130003_14380 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP V130003_14380 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V130003_14400 PF00403 Heavy-metal-associated domain V130003_14430 PF00027 Cyclic nucleotide-binding domain V130003_14430 PF13545 Crp-like helix-turn-helix domain V130003_14440 PF00582 Universal stress protein family V130003_14450 PF01171 PP-loop family V130003_14490 PF00005 ABC transporter V130003_14490 PF08402 TOBE domain V130003_14500 PF00528 Binding-protein-dependent transport system inner membrane component V130003_14510 PF00528 Binding-protein-dependent transport system inner membrane component V130003_14520 PF13416 Bacterial extracellular solute-binding protein V130003_14530 PF13416 Bacterial extracellular solute-binding protein V130003_14560 PF01235 Sodium:alanine symporter family V130003_14570 PF01810 LysE type translocator V130003_14610 PF04717 Type VI secretion system, phage-baseplate injector V130003_14610 PF16671 Actin cross-linking domain V130003_14620 PF05638 Type VI secretion system effector, Hcp V130003_14630 PF02074 Carboxypeptidase Taq (M32) metallopeptidase V130003_14640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_14640 PF00672 HAMP domain V130003_14640 PF02743 Cache domain V130003_14650 PF07690 Major Facilitator Superfamily V130003_14660 PF00529 HlyD membrane-fusion protein of T1SS V130003_14660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V130003_14670 PF02321 Outer membrane efflux protein V130003_14690 PF00270 DEAD/DEAH box helicase V130003_14690 PF00271 Helicase conserved C-terminal domain V130003_14700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_14700 PF08447 PAS fold V130003_14700 PF13426 PAS domain V130003_14710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_14710 PF00672 HAMP domain V130003_14720 PF00893 Small Multidrug Resistance protein V130003_14730 PF03441 FAD binding domain of DNA photolyase V130003_14730 PF00875 DNA photolyase V130003_14740 PF07690 Major Facilitator Superfamily V130003_14750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_14750 PF03466 LysR substrate binding domain V130003_14760 PF03099 Biotin/lipoate A/B protein ligase family V130003_14760 PF10437 Bacterial lipoate protein ligase C-terminus V130003_14770 PF00012 Hsp70 protein V130003_14780 PF00012 Hsp70 protein V130003_14820 PF04408 Helicase associated domain (HA2) V130003_14820 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold V130003_14820 PF00271 Helicase conserved C-terminal domain V130003_14820 PF00270 DEAD/DEAH box helicase V130003_14820 PF11898 Domain of unknown function (DUF3418) V130003_14860 PF03707 Bacterial signalling protein N terminal repeat V130003_14860 PF00563 EAL domain V130003_14860 PF00990 Diguanylate cyclase, GGDEF domain V130003_14880 PF00012 Hsp70 protein V130003_14890 PF00012 Hsp70 protein V130003_14900 PF17158 Membrane-associated sensor, integral membrane domain V130003_14900 PF00990 Diguanylate cyclase, GGDEF domain V130003_14920 PF00563 EAL domain V130003_14920 PF03707 Bacterial signalling protein N terminal repeat V130003_14920 PF00990 Diguanylate cyclase, GGDEF domain V130003_14960 PF06508 Queuosine biosynthesis protein QueC V130003_14970 PF04055 Radical SAM superfamily V130003_14990 PF10414 Sirohaem synthase dimerisation region V130003_14990 PF14824 Sirohaem biosynthesis protein central V130003_14990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V130003_15000 PF00497 Bacterial extracellular solute-binding proteins, family 3 V130003_15010 PF00528 Binding-protein-dependent transport system inner membrane component V130003_15020 PF00528 Binding-protein-dependent transport system inner membrane component V130003_15030 PF00005 ABC transporter V130003_15040 PF01027 Inhibitor of apoptosis-promoting Bax1 V130003_15050 PF04358 DsrC like protein V130003_15060 PF00708 Acylphosphatase V130003_15070 PF10672 S-adenosylmethionine-dependent methyltransferase V130003_15070 PF17785 PUA-like domain V130003_15080 PF00990 Diguanylate cyclase, GGDEF domain V130003_15090 PF00462 Glutaredoxin V130003_15090 PF08534 Redoxin V130003_15100 PF01627 Hpt domain V130003_15100 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V130003_15100 PF00072 Response regulator receiver domain V130003_15100 PF00512 His Kinase A (phospho-acceptor) domain V130003_15100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_15100 PF00672 HAMP domain V130003_15110 PF00072 Response regulator receiver domain V130003_15120 PF14497 Glutathione S-transferase, C-terminal domain V130003_15120 PF02798 Glutathione S-transferase, N-terminal domain V130003_15140 PF04209 homogentisate 1,2-dioxygenase V130003_15150 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V130003_15160 PF07687 Peptidase dimerisation domain V130003_15160 PF01546 Peptidase family M20/M25/M40 V130003_15190 PF16177 Acetyl-coenzyme A synthetase N-terminus V130003_15190 PF00501 AMP-binding enzyme V130003_15190 PF13193 AMP-binding enzyme C-terminal domain V130003_15200 PF04303 PrpF protein V130003_15210 PF00694 Aconitase C-terminal domain V130003_15210 PF00330 Aconitase family (aconitate hydratase) V130003_15220 PF00285 Citrate synthase, C-terminal domain V130003_15240 PF07729 FCD domain V130003_15240 PF00392 Bacterial regulatory proteins, gntR family V130003_15270 PF01970 Tripartite tricarboxylate transporter TctA family V130003_15300 PF02653 Branched-chain amino acid transport system / permease component V130003_15310 PF00005 ABC transporter V130003_15320 PF13407 Periplasmic binding protein domain V130003_15360 PF00072 Response regulator receiver domain V130003_15360 PF00486 Transcriptional regulatory protein, C terminal V130003_15370 PF00512 His Kinase A (phospho-acceptor) domain V130003_15370 PF00672 HAMP domain V130003_15370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_15380 PF06629 MltA-interacting protein MipA V130003_15390 PF04393 Protein of unknown function (DUF535) V130003_15400 PF02954 Bacterial regulatory protein, Fis family V130003_15400 PF00072 Response regulator receiver domain V130003_15400 PF00158 Sigma-54 interaction domain V130003_15410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_15420 PF00939 Sodium:sulfate symporter transmembrane region V130003_15430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_15430 PF00672 HAMP domain V130003_15440 PF00842 Alanine racemase, C-terminal domain V130003_15440 PF01168 Alanine racemase, N-terminal domain V130003_15450 PF00892 EamA-like transporter family V130003_15470 PF13302 Acetyltransferase (GNAT) domain V130003_15480 PF00158 Sigma-54 interaction domain V130003_15480 PF18024 Helix-turn-helix domain V130003_15490 PF05128 Domain of unknown function (DUF697) V130003_15500 PF04317 YcjX-like family, DUF463 V130003_15530 PF04715 Anthranilate synthase component I, N terminal region V130003_15530 PF00425 chorismate binding enzyme V130003_15540 PF00293 NUDIX domain V130003_15550 PF03222 Tryptophan/tyrosine permease family V130003_15560 PF03315 Serine dehydratase beta chain V130003_15560 PF03313 Serine dehydratase alpha chain V130003_15570 PF03313 Serine dehydratase alpha chain V130003_15570 PF03315 Serine dehydratase beta chain V130003_15580 PF01242 6-pyruvoyl tetrahydropterin synthase V130003_15590 PF00672 HAMP domain V130003_15590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_15590 PF12729 Four helix bundle sensory module for signal transduction V130003_15600 PF00152 tRNA synthetases class II (D, K and N) V130003_15600 PF01336 OB-fold nucleic acid binding domain V130003_15610 PF01609 Transposase DDE domain V130003_15610 PF13006 Insertion element 4 transposase N-terminal V130003_15620 PF02581 Thiamine monophosphate synthase V130003_15620 PF08543 Phosphomethylpyrimidine kinase V130003_15630 PF01966 HD domain V130003_15630 PF00672 HAMP domain V130003_15640 PF00155 Aminotransferase class I and II V130003_15670 PF00672 HAMP domain V130003_15670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_15670 PF17200 Single Cache domain 2 V130003_15680 PF04349 Periplasmic glucan biosynthesis protein, MdoG V130003_15690 PF13506 Glycosyl transferase family 21 V130003_15700 PF00356 Bacterial regulatory proteins, lacI family V130003_15710 PF04794 YdjC-like protein V130003_15720 PF02056 Family 4 glycosyl hydrolase V130003_15720 PF11975 Family 4 glycosyl hydrolase C-terminal domain V130003_15730 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit V130003_15740 PF02378 Phosphotransferase system, EIIC V130003_15750 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V130003_15760 PF01522 Polysaccharide deacetylase V130003_15770 PF02028 BCCT, betaine/carnitine/choline family transporter V130003_15780 PF01047 MarR family V130003_15790 PF00196 Bacterial regulatory proteins, luxR family V130003_15790 PF00072 Response regulator receiver domain V130003_15800 PF07730 Histidine kinase V130003_15800 PF17200 Single Cache domain 2 V130003_15820 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component V130003_15840 PF03480 Bacterial extracellular solute-binding protein, family 7 V130003_15870 PF00753 Metallo-beta-lactamase superfamily V130003_15880 PF05951 Bacterial protein of unknown function (DUF882) V130003_15940 PF00925 GTP cyclohydrolase II V130003_15960 PF07690 Major Facilitator Superfamily V130003_15980 PF00581 Rhodanese-like domain V130003_15980 PF17773 UPF0176 acylphosphatase like domain V130003_15990 PF03989 DNA gyrase C-terminal domain, beta-propeller V130003_15990 PF00521 DNA gyrase/topoisomerase IV, subunit A V130003_16010 PF03477 ATP cone domain V130003_16010 PF02867 Ribonucleotide reductase, barrel domain V130003_16010 PF00317 Ribonucleotide reductase, all-alpha domain V130003_16020 PF00268 Ribonucleotide reductase, small chain V130003_16030 PF00970 Oxidoreductase FAD-binding domain V130003_16030 PF00111 2Fe-2S iron-sulfur cluster binding domain V130003_16030 PF00175 Oxidoreductase NAD-binding domain V130003_16050 PF00994 Probable molybdopterin binding domain V130003_16080 PF00672 HAMP domain V130003_16080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_16080 PF17200 Single Cache domain 2 V130003_16110 PF00005 ABC transporter V130003_16120 PF00005 ABC transporter V130003_16130 PF01032 FecCD transport family V130003_16140 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family V130003_16160 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase V130003_16170 PF02654 Cobalamin-5-phosphate synthase V130003_16180 PF02277 Phosphoribosyltransferase V130003_16190 PF01641 SelR domain V130003_16200 PF00375 Sodium:dicarboxylate symporter family V130003_16210 PF00929 Exonuclease V130003_16210 PF08411 Exonuclease C-terminal V130003_16220 PF03788 LrgA family V130003_16230 PF04172 LrgB-like family V130003_16240 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V130003_16240 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region V130003_16260 PF02222 ATP-grasp domain V130003_16270 PF05724 Thiopurine S-methyltransferase (TPMT) V130003_16290 PF00216 Bacterial DNA-binding protein V130003_16300 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain V130003_16300 PF01588 Putative tRNA binding domain V130003_16300 PF03483 B3/4 domain V130003_16300 PF03484 tRNA synthetase B5 domain V130003_16300 PF03147 Ferredoxin-fold anticodon binding domain V130003_16310 PF01409 tRNA synthetases class II core domain (F) V130003_16310 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain V130003_16330 PF00990 Diguanylate cyclase, GGDEF domain V130003_16330 PF00072 Response regulator receiver domain V130003_16340 PF01066 CDP-alcohol phosphatidyltransferase V130003_16350 PF01541 GIY-YIG catalytic domain V130003_16350 PF02151 UvrB/uvrC motif V130003_16350 PF08459 UvrC Helix-hairpin-helix N-terminal V130003_16360 PF00196 Bacterial regulatory proteins, luxR family V130003_16360 PF00072 Response regulator receiver domain V130003_16370 PF00136 DNA polymerase family B V130003_16370 PF03104 DNA polymerase family B, exonuclease domain V130003_16380 PF00990 Diguanylate cyclase, GGDEF domain V130003_16380 PF13426 PAS domain V130003_16380 PF00563 EAL domain V130003_16400 PF01132 Elongation factor P (EF-P) OB domain V130003_16400 PF08207 Elongation factor P (EF-P) KOW-like domain V130003_16400 PF09285 Elongation factor P, C-terminal V130003_16410 PF04269 Protein of unknown function, DUF440 V130003_16440 PF00392 Bacterial regulatory proteins, gntR family V130003_16440 PF07702 UTRA domain V130003_16450 PF01979 Amidohydrolase family V130003_16460 PF00491 Arginase family V130003_16470 PF17392 Urocanase C-terminal domain V130003_16470 PF01175 Urocanase Rossmann-like domain V130003_16470 PF17391 Urocanase N-terminal domain V130003_16480 PF00221 Aromatic amino acid lyase V130003_16500 PF00089 Trypsin V130003_16510 PF04191 Phospholipid methyltransferase V130003_16520 PF02913 FAD linked oxidases, C-terminal domain V130003_16520 PF01565 FAD binding domain V130003_16520 PF13183 4Fe-4S dicluster domain V130003_16560 PF13488 Glycine zipper V130003_16560 PF00691 OmpA family V130003_16600 PF01259 SAICAR synthetase V130003_16620 PF00390 Malic enzyme, N-terminal domain V130003_16620 PF03949 Malic enzyme, NAD binding domain V130003_16640 PF02698 DUF218 domain V130003_16650 PF00990 Diguanylate cyclase, GGDEF domain V130003_16650 PF08448 PAS fold V130003_16660 PF00266 Aminotransferase class-V V130003_16680 PF07992 Pyridine nucleotide-disulphide oxidoreductase V130003_16690 PF00005 ABC transporter V130003_16690 PF00664 ABC transporter transmembrane region V130003_16700 PF00664 ABC transporter transmembrane region V130003_16700 PF00005 ABC transporter V130003_16710 PF00849 RNA pseudouridylate synthase V130003_16710 PF01479 S4 domain V130003_16720 PF01300 Telomere recombination V130003_16730 PF02811 PHP domain V130003_16740 PF00425 chorismate binding enzyme V130003_16740 PF04715 Anthranilate synthase component I, N terminal region V130003_16750 PF00117 Glutamine amidotransferase class-I V130003_16760 PF00591 Glycosyl transferase family, a/b domain V130003_16760 PF02885 Glycosyl transferase family, helical bundle domain V130003_16770 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase V130003_16770 PF00218 Indole-3-glycerol phosphate synthase V130003_16780 PF00291 Pyridoxal-phosphate dependent enzyme V130003_16790 PF00290 Tryptophan synthase alpha chain V130003_16800 PF00375 Sodium:dicarboxylate symporter family V130003_16810 PF00265 Thymidine kinase V130003_16820 PF02938 GAD domain V130003_16820 PF00152 tRNA synthetases class II (D, K and N) V130003_16820 PF01336 OB-fold nucleic acid binding domain V130003_16830 PF01904 Protein of unknown function DUF72 V130003_16840 PF13649 Methyltransferase domain V130003_16850 PF08003 Protein of unknown function (DUF1698) V130003_16860 PF08443 RimK-like ATP-grasp domain V130003_16860 PF18030 RimK PreATP-grasp domain V130003_16890 PF00266 Aminotransferase class-V V130003_16910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_16910 PF00989 PAS fold V130003_16910 PF00512 His Kinase A (phospho-acceptor) domain V130003_16940 PF04994 TfoX C-terminal domain V130003_16940 PF04993 TfoX N-terminal domain V130003_16960 PF03956 Lysine exporter LysO V130003_16980 PF00282 Pyridoxal-dependent decarboxylase conserved domain V130003_16990 PF01418 Helix-turn-helix domain, rpiR family V130003_16990 PF01380 SIS domain V130003_17000 PF00465 Iron-containing alcohol dehydrogenase V130003_17000 PF00171 Aldehyde dehydrogenase family V130003_17010 PF00462 Glutaredoxin V130003_17020 PF06826 Predicted Permease Membrane Region V130003_17020 PF02080 TrkA-C domain V130003_17030 PF17871 AAA lid domain V130003_17030 PF02861 Clp amino terminal domain, pathogenicity island component V130003_17030 PF10431 C-terminal, D2-small domain, of ClpB protein V130003_17030 PF00004 ATPase family associated with various cellular activities (AAA) V130003_17030 PF07724 AAA domain (Cdc48 subfamily) V130003_17040 PF02617 ATP-dependent Clp protease adaptor protein ClpS V130003_17050 PF00313 'Cold-shock' DNA-binding domain V130003_17060 PF03971 Monomeric isocitrate dehydrogenase V130003_17070 PF00849 RNA pseudouridylate synthase V130003_17080 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase V130003_17080 PF01502 Phosphoribosyl-AMP cyclohydrolase V130003_17090 PF00977 Histidine biosynthesis protein V130003_17100 PF00977 Histidine biosynthesis protein V130003_17110 PF00117 Glutamine amidotransferase class-I V130003_17120 PF00475 Imidazoleglycerol-phosphate dehydratase V130003_17120 PF08645 Polynucleotide kinase 3 phosphatase V130003_17130 PF00155 Aminotransferase class I and II V130003_17140 PF00815 Histidinol dehydrogenase V130003_17150 PF08029 HisG, C-terminal domain V130003_17150 PF01634 ATP phosphoribosyltransferase V130003_17160 PF03553 Na+/H+ antiporter family V130003_17170 PF00816 H-NS histone family V130003_17180 PF00294 pfkB family carbohydrate kinase V130003_17200 PF04356 Protein of unknown function (DUF489) V130003_17210 PF00206 Lyase V130003_17210 PF08328 Adenylosuccinate lyase C-terminal V130003_17230 PF16036 Chalcone isomerase-like V130003_17280 PF00106 short chain dehydrogenase V130003_17300 PF01435 Peptidase family M48 V130003_17330 PF08241 Methyltransferase domain V130003_17340 PF00155 Aminotransferase class I and II V130003_17350 PF06968 Biotin and Thiamin Synthesis associated domain V130003_17350 PF04055 Radical SAM superfamily V130003_17360 PF00202 Aminotransferase class-III V130003_17370 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V130003_17370 PF02403 Seryl-tRNA synthetase N-terminal domain V130003_17380 PF00004 ATPase family associated with various cellular activities (AAA) V130003_17380 PF12002 MgsA AAA+ ATPase C terminal V130003_17380 PF16193 AAA C-terminal domain V130003_17390 PF03548 Outer membrane lipoprotein carrier protein LolA V130003_17400 PF07516 SecA Wing and Scaffold domain V130003_17400 PF01043 SecA preprotein cross-linking domain V130003_17400 PF02810 SEC-C motif V130003_17400 PF07517 SecA DEAD-like domain V130003_17410 PF01207 Dihydrouridine synthase (Dus) V130003_17420 PF00990 Diguanylate cyclase, GGDEF domain V130003_17430 PF00005 ABC transporter V130003_17440 PF02653 Branched-chain amino acid transport system / permease component V130003_17460 PF09905 DNA-binding protein VF530 V130003_17470 PF04217 Protein of unknown function, DUF412 V130003_17480 PF00871 Acetokinase family V130003_17490 PF07085 DRTGG domain V130003_17490 PF01515 Phosphate acetyl/butaryl transferase V130003_17500 PF13409 Glutathione S-transferase, N-terminal domain V130003_17510 PF00005 ABC transporter V130003_17510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V130003_17520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V130003_17520 PF00005 ABC transporter V130003_17530 PF12911 N-terminal TM domain of oligopeptide transport permease C V130003_17530 PF00528 Binding-protein-dependent transport system inner membrane component V130003_17540 PF00528 Binding-protein-dependent transport system inner membrane component V130003_17550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V130003_17570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_17570 PF00512 His Kinase A (phospho-acceptor) domain V130003_17570 PF08448 PAS fold V130003_17570 PF13188 PAS domain V130003_17570 PF00072 Response regulator receiver domain V130003_17580 PF00158 Sigma-54 interaction domain V130003_17580 PF02954 Bacterial regulatory protein, Fis family V130003_17580 PF00072 Response regulator receiver domain V130003_17590 PF00563 EAL domain V130003_17590 PF00990 Diguanylate cyclase, GGDEF domain V130003_17590 PF03707 Bacterial signalling protein N terminal repeat V130003_17590 PF13188 PAS domain V130003_17600 PF00158 Sigma-54 interaction domain V130003_17600 PF00072 Response regulator receiver domain V130003_17600 PF02954 Bacterial regulatory protein, Fis family V130003_17610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_17610 PF00512 His Kinase A (phospho-acceptor) domain V130003_17620 PF00989 PAS fold V130003_17620 PF13188 PAS domain V130003_17620 PF13426 PAS domain V130003_17620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_17620 PF00512 His Kinase A (phospho-acceptor) domain V130003_17640 PF00072 Response regulator receiver domain V130003_17670 PF01300 Telomere recombination V130003_17670 PF03481 Putative GTP-binding controlling metal-binding V130003_17700 PF01161 Phosphatidylethanolamine-binding protein V130003_17720 PF00704 Glycosyl hydrolases family 18 V130003_17720 PF06483 Chitinase C V130003_17750 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V130003_17750 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V130003_17760 PF01022 Bacterial regulatory protein, arsR family V130003_17770 PF00990 Diguanylate cyclase, GGDEF domain V130003_17770 PF08448 PAS fold V130003_17790 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V130003_17820 PF01037 Lrp/AsnC ligand binding domain V130003_17820 PF13404 AsnC-type helix-turn-helix domain V130003_17830 PF00291 Pyridoxal-phosphate dependent enzyme V130003_17840 PF08496 Peptidase family S49 N-terminal V130003_17840 PF01343 Peptidase family S49 V130003_17850 PF00106 short chain dehydrogenase V130003_17860 PF03692 Putative zinc- or iron-chelating domain V130003_17870 PF03692 Putative zinc- or iron-chelating domain V130003_17880 PF13662 Toprim domain V130003_17880 PF02132 RecR protein V130003_17890 PF02575 YbaB/EbfC DNA-binding family V130003_17900 PF12170 DNA polymerase III tau subunit V interacting with alpha V130003_17900 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding V130003_17900 PF12169 DNA polymerase III subunits gamma and tau domain III V130003_17910 PF00156 Phosphoribosyl transferase domain V130003_17950 PF00072 Response regulator receiver domain V130003_17960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_17960 PF03466 LysR substrate binding domain V130003_17970 PF00881 Nitroreductase family V130003_17980 PF00378 Enoyl-CoA hydratase/isomerase V130003_17980 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V130003_17980 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V130003_17990 PF02803 Thiolase, C-terminal domain V130003_17990 PF00108 Thiolase, N-terminal domain V130003_18000 PF04542 Sigma-70 region 2 V130003_18000 PF08281 Sigma-70, region 4 V130003_18020 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) V130003_18030 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) V130003_18040 PF01451 Low molecular weight phosphotyrosine protein phosphatase V130003_18050 PF12557 Cob(I)alamin adenosyltransferase N terminal V130003_18050 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP V130003_18060 PF05170 AsmA family V130003_18070 PF00485 Phosphoribulokinase / Uridine kinase family V130003_18090 PF10609 NUBPL iron-transfer P-loop NTPase V130003_18100 PF09334 tRNA synthetases class I (M) V130003_18100 PF01588 Putative tRNA binding domain V130003_18120 PF01048 Phosphorylase superfamily V130003_18130 PF00403 Heavy-metal-associated domain V130003_18140 PF00571 CBS domain V130003_18140 PF01743 Poly A polymerase head domain V130003_18150 PF07694 5TMR of 5TMR-LYT V130003_18150 PF00990 Diguanylate cyclase, GGDEF domain V130003_18160 PF02391 MoaE protein V130003_18170 PF02597 ThiS family V130003_18180 PF01967 MoaC family V130003_18190 PF00994 Probable molybdopterin binding domain V130003_18200 PF06463 Molybdenum Cofactor Synthesis C V130003_18200 PF04055 Radical SAM superfamily V130003_18210 PF01933 Uncharacterised protein family UPF0052 V130003_18220 PF01627 Hpt domain V130003_18230 PF02954 Bacterial regulatory protein, Fis family V130003_18230 PF00072 Response regulator receiver domain V130003_18230 PF00158 Sigma-54 interaction domain V130003_18240 PF02151 UvrB/uvrC motif V130003_18240 PF17757 UvrB interaction domain V130003_18240 PF12344 Ultra-violet resistance protein B V130003_18240 PF00271 Helicase conserved C-terminal domain V130003_18240 PF04851 Type III restriction enzyme, res subunit V130003_18250 PF02151 UvrB/uvrC motif V130003_18250 PF00271 Helicase conserved C-terminal domain V130003_18250 PF17757 UvrB interaction domain V130003_18250 PF04851 Type III restriction enzyme, res subunit V130003_18250 PF12344 Ultra-violet resistance protein B V130003_18260 PF02508 Rnf-Nqr subunit, membrane protein V130003_18270 PF04060 Putative Fe-S cluster V130003_18280 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit V130003_18280 PF12838 4Fe-4S dicluster domain V130003_18280 PF10531 SLBB domain V130003_18280 PF13375 RnfC Barrel sandwich hybrid domain V130003_18290 PF03116 NQR2, RnfD, RnfE family V130003_18300 PF04205 FMN-binding domain V130003_18310 PF02508 Rnf-Nqr subunit, membrane protein V130003_18320 PF10576 Iron-sulfur binding domain of endonuclease III V130003_18320 PF00633 Helix-hairpin-helix motif V130003_18320 PF00730 HhH-GPD superfamily base excision DNA repair protein V130003_18330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V130003_18340 PF10952 Protein of unknown function (DUF2753) V130003_18350 PF18393 MotY N-terminal domain V130003_18350 PF00691 OmpA family V130003_18360 PF00929 Exonuclease V130003_18370 PF13726 Na+-H+ antiporter family V130003_18370 PF03553 Na+/H+ antiporter family V130003_18380 PF00156 Phosphoribosyl transferase domain V130003_18390 PF02674 Colicin V production protein V130003_18400 PF05036 Sporulation related domain V130003_18410 PF08245 Mur ligase middle domain V130003_18410 PF02875 Mur ligase family, glutamate ligase domain V130003_18420 PF01039 Carboxyl transferase domain V130003_18420 PF17848 Acetyl-coA carboxylase zinc finger domain V130003_18430 PF01416 tRNA pseudouridine synthase V130003_18460 PF00749 tRNA synthetases class I (E and Q), catalytic domain V130003_18460 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain V130003_18470 PF02378 Phosphotransferase system, EIIC V130003_18470 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V130003_18470 PF00367 phosphotransferase system, EIIB V130003_18480 PF01979 Amidohydrolase family V130003_18490 PF01047 MarR family V130003_18490 PF00480 ROK family V130003_18500 PF00999 Sodium/hydrogen exchanger family V130003_18500 PF02254 TrkA-N domain V130003_18510 PF00733 Asparagine synthase V130003_18510 PF13537 Glutamine amidotransferase domain V130003_18520 PF00733 Asparagine synthase V130003_18520 PF13537 Glutamine amidotransferase domain V130003_18530 PF02357 Transcription termination factor nusG V130003_18540 PF00854 POT family V130003_18550 PF00762 Ferrochelatase V130003_18560 PF05191 Adenylate kinase, active site lid V130003_18570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_18570 PF00183 Hsp90 protein V130003_18580 PF00486 Transcriptional regulatory protein, C terminal V130003_18590 PF17323 Trans-membrane regulatory protein ToxS V130003_18610 PF12850 Calcineurin-like phosphoesterase superfamily domain V130003_18620 PF08338 Domain of unknown function (DUF1731) V130003_18620 PF01370 NAD dependent epimerase/dehydratase family V130003_18630 PF00106 short chain dehydrogenase V130003_18640 PF00085 Thioredoxin V130003_18650 PF16200 C-terminal region of band_7 V130003_18650 PF01145 SPFH domain / Band 7 family V130003_18660 PF01957 NfeD-like C-terminal, partner-binding V130003_18670 PF13411 MerR HTH family regulatory protein V130003_18680 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) V130003_18690 PF13609 Gram-negative porin V130003_18700 PF00533 BRCA1 C Terminus (BRCT) domain V130003_18700 PF01653 NAD-dependent DNA ligase adenylation domain V130003_18700 PF03120 NAD-dependent DNA ligase OB-fold domain V130003_18700 PF12826 Helix-hairpin-helix motif V130003_18700 PF03119 NAD-dependent DNA ligase C4 zinc finger domain V130003_18710 PF04354 ZipA, C-terminal FtsZ-binding domain V130003_18730 PF00291 Pyridoxal-phosphate dependent enzyme V130003_18740 PF00381 PTS HPr component phosphorylation site V130003_18750 PF05524 PEP-utilising enzyme, N-terminal V130003_18750 PF00391 PEP-utilising enzyme, mobile domain V130003_18750 PF02896 PEP-utilising enzyme, TIM barrel domain V130003_18760 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V130003_18770 PF01494 FAD binding domain V130003_18780 PF04055 Radical SAM superfamily V130003_18780 PF01938 TRAM domain V130003_18780 PF00919 Uncharacterized protein family UPF0004 V130003_18790 PF02562 PhoH-like protein V130003_18800 PF02130 Uncharacterized protein family UPF0054 V130003_18810 PF00571 CBS domain V130003_18810 PF03471 Transporter associated domain V130003_18820 PF00795 Carbon-nitrogen hydrolase V130003_18830 PF00795 Carbon-nitrogen hydrolase V130003_18840 PF07295 Zinc-ribbon containing domain V130003_18850 PF08264 Anticodon-binding domain of tRNA V130003_18850 PF00133 tRNA synthetases class I (I, L, M and V) V130003_18850 PF13603 Leucyl-tRNA synthetase, Domain 2 V130003_18860 PF04390 Lipopolysaccharide-assembly V130003_18870 PF14840 Processivity clamp loader gamma complex DNA pol III C-term V130003_18870 PF06144 DNA polymerase III, delta subunit V130003_18890 PF02590 Predicted SPOUT methyltransferase V130003_18900 PF00905 Penicillin binding protein transpeptidase domain V130003_18900 PF03717 Penicillin-binding Protein dimerisation domain V130003_18910 PF01098 Cell cycle protein V130003_18920 PF03330 Lytic transglycolase V130003_18920 PF05036 Sporulation related domain V130003_18930 PF07943 Penicillin-binding protein 5, C-terminal domain V130003_18930 PF00768 D-alanyl-D-alanine carboxypeptidase V130003_18940 PF04359 Protein of unknown function (DUF493) V130003_18950 PF03099 Biotin/lipoate A/B protein ligase family V130003_18960 PF04055 Radical SAM superfamily V130003_18960 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family V130003_18980 PF00464 Serine hydroxymethyltransferase V130003_19020 PF13807 G-rich domain on putative tyrosine kinase V130003_19020 PF13614 AAA domain V130003_19020 PF02706 Chain length determinant protein V130003_19030 PF10531 SLBB domain V130003_19030 PF18412 Outer-membrane lipoprotein Wza C-terminal domain V130003_19030 PF02563 Polysaccharide biosynthesis/export protein V130003_19050 PF02397 Bacterial sugar transferase V130003_19080 PF12561 ToxR activated gene A lipoprotein domain V130003_19080 PF17945 Beta/Gamma crystallin V130003_19110 PF03808 Glycosyl transferase WecB/TagA/CpsF family V130003_19130 PF00862 Sucrose synthase V130003_19130 PF00534 Glycosyl transferases group 1 V130003_19180 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain V130003_19180 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain V130003_19180 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain V130003_19190 PF02350 UDP-N-acetylglucosamine 2-epimerase V130003_19200 PF01451 Low molecular weight phosphotyrosine protein phosphatase V130003_19210 PF00873 AcrB/AcrD/AcrF family V130003_19220 PF13533 Biotin-lipoyl like V130003_19230 PF00128 Alpha amylase, catalytic domain V130003_19230 PF16657 Maltogenic Amylase, C-terminal domain V130003_19240 PF00367 phosphotransferase system, EIIB V130003_19240 PF02378 Phosphotransferase system, EIIC V130003_19250 PF00356 Bacterial regulatory proteins, lacI family V130003_19270 PF09383 NIL domain V130003_19270 PF00005 ABC transporter V130003_19280 PF00528 Binding-protein-dependent transport system inner membrane component V130003_19290 PF03180 NLPA lipoprotein V130003_19300 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) V130003_19310 PF07348 Syd protein (SUKH-2) V130003_19320 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term V130003_19320 PF14489 QueF-like protein V130003_19340 PF00990 Diguanylate cyclase, GGDEF domain V130003_19350 PF03641 Possible lysine decarboxylase V130003_19350 PF11892 Domain of unknown function (DUF3412) V130003_19350 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases V130003_19360 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V130003_19360 PF01367 5'-3' exonuclease, C-terminal SAM fold V130003_19370 PF04241 Protein of unknown function (DUF423) V130003_19380 PF03466 LysR substrate binding domain V130003_19380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_19390 PF02926 THUMP domain V130003_19390 PF02568 Thiamine biosynthesis protein (ThiI) V130003_19400 PF13677 Membrane MotB of proton-channel complex MotA/MotB V130003_19400 PF00691 OmpA family V130003_19410 PF01618 MotA/TolQ/ExbB proton channel family V130003_19420 PF02609 Exonuclease VII small subunit V130003_19430 PF00348 Polyprenyl synthetase V130003_19440 PF02779 Transketolase, pyrimidine binding domain V130003_19440 PF02780 Transketolase, C-terminal domain V130003_19440 PF13292 1-deoxy-D-xylulose-5-phosphate synthase V130003_19450 PF00849 RNA pseudouridylate synthase V130003_19460 PF04287 tRNA pseudouridine synthase C V130003_19490 PF13302 Acetyltransferase (GNAT) domain V130003_19510 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 V130003_19520 PF03806 AbgT putative transporter family V130003_19530 PF01197 Ribosomal protein L31 V130003_19540 PF01980 tRNA-methyltransferase O V130003_19540 PF18389 TrmO C-terminal domain V130003_19550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V130003_19550 PF04073 Aminoacyl-tRNA editing domain V130003_19550 PF03129 Anticodon binding domain V130003_19570 PF06786 Uncharacterised protein family (UPF0253) V130003_19590 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal V130003_19590 PF02769 AIR synthase related protein, C-terminal domain V130003_19590 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain V130003_19610 PF01464 Transglycosylase SLT domain V130003_19610 PF00497 Bacterial extracellular solute-binding proteins, family 3 V130003_19620 PF14437 MafB19-like deaminase V130003_19630 PF03806 AbgT putative transporter family V130003_19680 PF07963 Prokaryotic N-terminal methylation motif V130003_19680 PF00114 Pilin (bacterial filament) V130003_19690 PF00226 DnaJ domain V130003_19690 PF01556 DnaJ C terminal domain V130003_19690 PF00684 DnaJ central domain V130003_19700 PF00226 DnaJ domain V130003_19700 PF01556 DnaJ C terminal domain V130003_19700 PF00684 DnaJ central domain V130003_19710 PF00012 Hsp70 protein V130003_19720 PF01025 GrpE V130003_19730 PF01513 ATP-NAD kinase V130003_19740 PF02463 RecF/RecN/SMC N terminal domain V130003_19750 PF04355 SmpA / OmlA family V130003_19760 PF03658 RnfH family Ubiquitin V130003_19770 PF03364 Polyketide cyclase / dehydrase and lipid transport V130003_19780 PF01668 SmpB protein V130003_19790 PF00589 Phage integrase family V130003_19790 PF13356 Arm DNA-binding domain V130003_19800 PF01527 Transposase V130003_19810 PF00665 Integrase core domain V130003_19820 PF01609 Transposase DDE domain V130003_19820 PF13808 DDE_Tnp_1-associated V130003_19840 PF00535 Glycosyl transferase family 2 V130003_19870 PF00813 FliP family V130003_19910 PF07559 Flagellar basal body protein FlaE V130003_19910 PF00460 Flagella basal body rod protein V130003_19910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V130003_19920 PF03963 Flagellar hook capping protein - N-terminal region V130003_19950 PF02874 ATP synthase alpha/beta family, beta-barrel domain V130003_19950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V130003_19950 PF18269 T3SS EscN ATPase C-terminal domain V130003_19980 PF08345 Flagellar M-ring protein C-terminal V130003_19980 PF01514 Secretory protein of YscJ/FliF family V130003_19990 PF02049 Flagellar hook-basal body complex protein FliE V130003_20020 PF02119 Flagellar P-ring protein V130003_20030 PF02107 Flagellar L-ring protein V130003_20050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V130003_20050 PF00460 Flagella basal body rod protein V130003_20060 PF00460 Flagella basal body rod protein V130003_20060 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V130003_20070 PF00771 FHIPEP family V130003_20080 PF00771 FHIPEP family V130003_20090 PF01312 FlhB HrpN YscU SpaS Family V130003_20100 PF01311 Bacterial export proteins, family 1 V130003_20110 PF01313 Bacterial export proteins, family 3 V130003_20200 PF04002 RadC-like JAB domain V130003_20310 PF00271 Helicase conserved C-terminal domain V130003_20310 PF04851 Type III restriction enzyme, res subunit V130003_20320 PF13358 DDE superfamily endonuclease V130003_20360 PF11953 Domain of unknown function (DUF3470) V130003_20360 PF00037 4Fe-4S binding domain V130003_20370 PF00588 SpoU rRNA Methylase family V130003_20370 PF08032 RNA 2'-O ribose methyltransferase substrate binding V130003_20390 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase V130003_20400 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase V130003_20410 PF04223 Citrate lyase, alpha subunit (CitF) V130003_20420 PF03328 HpcH/HpaI aldolase/citrate lyase family V130003_20430 PF06857 Malonate decarboxylase delta subunit (MdcD) V130003_20440 PF08218 Citrate lyase ligase C-terminal domain V130003_20450 PF03390 2-hydroxycarboxylate transporter family V130003_20460 PF04277 Oxaloacetate decarboxylase, gamma chain V130003_20470 PF00682 HMGL-like V130003_20470 PF00364 Biotin-requiring enzyme V130003_20470 PF02436 Conserved carboxylase domain V130003_20480 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit V130003_20490 PF17203 Single cache domain 3 V130003_20490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_20500 PF12431 Transcriptional regulator V130003_20500 PF00072 Response regulator receiver domain V130003_20530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_20530 PF03466 LysR substrate binding domain V130003_20540 PF01266 FAD dependent oxidoreductase V130003_20550 PF01235 Sodium:alanine symporter family V130003_20560 PF17837 4'-phosphopantetheinyl transferase N-terminal domain V130003_20560 PF01648 4'-phosphopantetheinyl transferase superfamily V130003_20570 PF00005 ABC transporter V130003_20580 PF01032 FecCD transport family V130003_20590 PF01032 FecCD transport family V130003_20600 PF01032 FecCD transport family V130003_20610 PF01497 Periplasmic binding protein V130003_20640 PF00425 chorismate binding enzyme V130003_20650 PF00501 AMP-binding enzyme V130003_20650 PF13193 AMP-binding enzyme C-terminal domain V130003_20660 PF00857 Isochorismatase family V130003_20660 PF00550 Phosphopantetheine attachment site V130003_20670 PF01184 GPR1/FUN34/yaaH family V130003_20680 PF06483 Chitinase C V130003_20680 PF00704 Glycosyl hydrolases family 18 V130003_20690 PF00809 Pterin binding enzyme V130003_20700 PF01636 Phosphotransferase enzyme family V130003_20710 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase V130003_20720 PF03466 LysR substrate binding domain V130003_20720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_20730 PF07690 Major Facilitator Superfamily V130003_20850 PF03432 Relaxase/Mobilisation nuclease domain V130003_20850 PF18821 Large polyvalent protein-associated domain 7 V130003_20900 PF13358 DDE superfamily endonuclease V130003_20950 PF00589 Phage integrase family V130003_20950 PF13356 Arm DNA-binding domain V130003_20960 PF00958 GMP synthase C terminal domain V130003_20960 PF02540 NAD synthase V130003_20960 PF00117 Glutamine amidotransferase class-I V130003_20970 PF00571 CBS domain V130003_20970 PF00478 IMP dehydrogenase / GMP reductase domain V130003_20980 PF02601 Exonuclease VII, large subunit V130003_20980 PF13742 OB-fold nucleic acid binding domain V130003_21010 PF01926 50S ribosome-binding GTPase V130003_21010 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal V130003_21020 PF13360 PQQ-like domain V130003_21030 PF09976 Tetratricopeptide repeat-like domain V130003_21040 PF03129 Anticodon binding domain V130003_21040 PF13393 Histidyl-tRNA synthetase V130003_21050 PF04551 GcpE protein V130003_21060 PF13464 Domain of unknown function (DUF4115) V130003_21070 PF04055 Radical SAM superfamily V130003_21080 PF00334 Nucleoside diphosphate kinase V130003_21090 PF12404 Peptidase V130003_21090 PF00883 Cytosol aminopeptidase family, catalytic domain V130003_21100 PF04384 Iron-sulphur cluster assembly V130003_21110 PF00111 2Fe-2S iron-sulfur cluster binding domain V130003_21120 PF00012 Hsp70 protein V130003_21130 PF00226 DnaJ domain V130003_21130 PF07743 HSCB C-terminal oligomerisation domain V130003_21140 PF01521 Iron-sulphur cluster biosynthesis V130003_21150 PF01592 NifU-like N terminal domain V130003_21160 PF00266 Aminotransferase class-V V130003_21170 PF02082 Transcriptional regulator V130003_21180 PF00588 SpoU rRNA Methylase family V130003_21190 PF00459 Inositol monophosphatase family V130003_21200 PF07549 SecD/SecF GG Motif V130003_21200 PF02355 Protein export membrane protein V130003_21210 PF07549 SecD/SecF GG Motif V130003_21210 PF13721 SecD export protein N-terminal TM region V130003_21210 PF02355 Protein export membrane protein V130003_21220 PF02699 Preprotein translocase subunit V130003_21230 PF01702 Queuine tRNA-ribosyltransferase V130003_21240 PF02547 Queuosine biosynthesis protein V130003_21250 PF02547 Queuosine biosynthesis protein V130003_21260 PF00571 CBS domain V130003_21270 PF00463 Isocitrate lyase family V130003_21280 PF01274 Malate synthase V130003_21290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_21290 PF03466 LysR substrate binding domain V130003_21300 PF00578 AhpC/TSA family V130003_21300 PF10417 C-terminal domain of 1-Cys peroxiredoxin V130003_21310 PF03932 CutC family V130003_21320 PF03976 Polyphosphate kinase 2 (PPK2) V130003_21330 PF01895 PhoU domain V130003_21340 PF00005 ABC transporter V130003_21350 PF00528 Binding-protein-dependent transport system inner membrane component V130003_21360 PF00528 Binding-protein-dependent transport system inner membrane component V130003_21370 PF02503 Polyphosphate kinase middle domain V130003_21370 PF13090 Polyphosphate kinase C-terminal domain 2 V130003_21370 PF17941 Polyphosphate kinase C-terminal domain 1 V130003_21370 PF13089 Polyphosphate kinase N-terminal domain V130003_21380 PF02541 Ppx/GppA phosphatase family V130003_21390 PF12849 PBP superfamily domain V130003_21400 PF11808 Phosphate regulon sensor protein PhoR V130003_21400 PF00512 His Kinase A (phospho-acceptor) domain V130003_21400 PF00989 PAS fold V130003_21400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_21410 PF00072 Response regulator receiver domain V130003_21410 PF00486 Transcriptional regulatory protein, C terminal V130003_21420 PF04381 Putative exonuclease, RdgC V130003_21430 PF01136 Peptidase family U32 V130003_21430 PF16325 Peptidase family U32 C-terminal domain V130003_21440 PF00037 4Fe-4S binding domain V130003_21450 PF00881 Nitroreductase family V130003_21470 PF07724 AAA domain (Cdc48 subfamily) V130003_21470 PF10431 C-terminal, D2-small domain, of ClpB protein V130003_21470 PF00004 ATPase family associated with various cellular activities (AAA) V130003_21470 PF17871 AAA lid domain V130003_21470 PF02861 Clp amino terminal domain, pathogenicity island component V130003_21480 PF00004 ATPase family associated with various cellular activities (AAA) V130003_21480 PF07724 AAA domain (Cdc48 subfamily) V130003_21480 PF17871 AAA lid domain V130003_21480 PF02861 Clp amino terminal domain, pathogenicity island component V130003_21480 PF10431 C-terminal, D2-small domain, of ClpB protein V130003_21490 PF02578 Multi-copper polyphenol oxidoreductase laccase V130003_21500 PF00849 RNA pseudouridylate synthase V130003_21500 PF01479 S4 domain V130003_21510 PF13525 Outer membrane lipoprotein V130003_21520 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V130003_21530 PF01817 Chorismate mutase type II V130003_21530 PF00800 Prephenate dehydratase V130003_21540 PF13416 Bacterial extracellular solute-binding protein V130003_21550 PF00563 EAL domain V130003_21550 PF00990 Diguanylate cyclase, GGDEF domain V130003_21560 PF01931 Protein of unknown function DUF84 V130003_21570 PF01371 Trp repressor protein V130003_21580 PF14718 Soluble lytic murein transglycosylase L domain V130003_21580 PF01464 Transglycosylase SLT domain V130003_21590 PF00005 ABC transporter V130003_21590 PF12848 ABC transporter V130003_21600 PF07238 PilZ domain V130003_21610 PF01817 Chorismate mutase type II V130003_21610 PF02153 Prephenate dehydrogenase V130003_21620 PF00793 DAHP synthetase I family V130003_21630 PF07694 5TMR of 5TMR-LYT V130003_21630 PF06580 Histidine kinase V130003_21640 PF04397 LytTr DNA-binding domain V130003_21640 PF00072 Response regulator receiver domain V130003_21650 PF00933 Glycosyl hydrolase family 3 N terminal domain V130003_21660 PF03702 Anhydro-N-acetylmuramic acid kinase V130003_21670 PF13580 SIS domain V130003_21690 PF02554 Carbon starvation protein CstA V130003_21700 PF02401 LytB protein V130003_21710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V130003_21720 PF01252 Signal peptidase (SPase) II V130003_21730 PF08264 Anticodon-binding domain of tRNA V130003_21730 PF00133 tRNA synthetases class I (I, L, M and V) V130003_21730 PF06827 Zinc finger found in FPG and IleRS V130003_21740 PF06574 FAD synthetase V130003_21740 PF01687 Riboflavin kinase V130003_21750 PF03023 Lipid II flippase MurJ V130003_21760 PF03023 Lipid II flippase MurJ V130003_21770 PF01649 Ribosomal protein S20 V130003_21780 PF01022 Bacterial regulatory protein, arsR family V130003_21790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_21790 PF03466 LysR substrate binding domain V130003_21800 PF02690 Na+/Pi-cotransporter V130003_21810 PF00303 Thymidylate synthase V130003_21820 PF01790 Prolipoprotein diacylglyceryl transferase V130003_21830 PF01925 Sulfite exporter TauE/SafE V130003_21840 PF00391 PEP-utilising enzyme, mobile domain V130003_21840 PF02896 PEP-utilising enzyme, TIM barrel domain V130003_21840 PF01590 GAF domain V130003_21840 PF05524 PEP-utilising enzyme, N-terminal V130003_21850 PF00293 NUDIX domain V130003_21860 PF02976 DNA mismatch repair enzyme MutH V130003_21870 PF00248 Aldo/keto reductase family V130003_21890 PF02954 Bacterial regulatory protein, Fis family V130003_21890 PF00072 Response regulator receiver domain V130003_21890 PF00158 Sigma-54 interaction domain V130003_21900 PF00152 tRNA synthetases class II (D, K and N) V130003_21900 PF01336 OB-fold nucleic acid binding domain V130003_21910 PF00472 RF-1 domain V130003_21910 PF03462 PCRF domain V130003_21920 PF05525 Branched-chain amino acid transport protein V130003_21930 PF05175 Methyltransferase small domain V130003_21940 PF00271 Helicase conserved C-terminal domain V130003_21940 PF00270 DEAD/DEAH box helicase V130003_21950 PF03144 Elongation factor Tu domain 2 V130003_21950 PF00009 Elongation factor Tu GTP binding domain V130003_21950 PF16658 Class II release factor RF3, C-terminal domain V130003_21960 PF00563 EAL domain V130003_21960 PF00990 Diguanylate cyclase, GGDEF domain V130003_21960 PF03707 Bacterial signalling protein N terminal repeat V130003_21990 PF13508 Acetyltransferase (GNAT) domain V130003_22000 PF02036 SCP-2 sterol transfer family V130003_22010 PF00563 EAL domain V130003_22010 PF00990 Diguanylate cyclase, GGDEF domain V130003_22010 PF03707 Bacterial signalling protein N terminal repeat V130003_22020 PF01136 Peptidase family U32 V130003_22030 PF01136 Peptidase family U32 V130003_22060 PF13181 Tetratricopeptide repeat V130003_22060 PF07719 Tetratricopeptide repeat V130003_22070 PF00575 S1 RNA binding domain V130003_22070 PF03725 3' exoribonuclease family, domain 2 V130003_22070 PF01138 3' exoribonuclease family, domain 1 V130003_22070 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain V130003_22070 PF00013 KH domain V130003_22080 PF00312 Ribosomal protein S15 V130003_22090 PF09157 Pseudouridine synthase II TruB, C-terminal V130003_22090 PF01509 TruB family pseudouridylate synthase (N terminal domain) V130003_22090 PF16198 tRNA pseudouridylate synthase B C-terminal domain V130003_22100 PF02033 Ribosome-binding factor A V130003_22110 PF04760 Translation initiation factor IF-2, N-terminal region V130003_22110 PF08364 Bacterial translation initiation factor IF-2 associated region V130003_22110 PF11987 Translation-initiation factor 2 V130003_22110 PF00009 Elongation factor Tu GTP binding domain V130003_22120 PF00575 S1 RNA binding domain V130003_22120 PF08529 NusA N-terminal domain V130003_22120 PF13184 NusA-like KH domain V130003_22130 PF17384 RimP C-terminal SH3 domain V130003_22130 PF02576 RimP N-terminal domain V130003_22140 PF03840 Preprotein translocase SecG subunit V130003_22150 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V130003_22150 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V130003_22150 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V130003_22150 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V130003_22160 PF00809 Pterin binding enzyme V130003_22170 PF00004 ATPase family associated with various cellular activities (AAA) V130003_22170 PF17862 AAA+ lid domain V130003_22170 PF06480 FtsH Extracellular V130003_22170 PF01434 Peptidase family M41 V130003_22180 PF01728 FtsJ-like methyltransferase V130003_22190 PF01985 CRS1 / YhbY (CRM) domain V130003_22200 PF03449 Transcription elongation factor, N-terminal V130003_22200 PF01272 Transcription elongation factor, GreA/GreB, C-term V130003_22210 PF13609 Gram-negative porin V130003_22220 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family V130003_22230 PF01479 S4 domain V130003_22230 PF00579 tRNA synthetases class I (W and Y) V130003_22240 PF01551 Peptidase family M23 V130003_22240 PF04225 Opacity-associated protein A LysM-like domain V130003_22250 PF00873 AcrB/AcrD/AcrF family V130003_22270 PF01521 Iron-sulphur cluster biosynthesis V130003_22280 PF00202 Aminotransferase class-III V130003_22290 PF01594 AI-2E family transporter V130003_22300 PF05175 Methyltransferase small domain V130003_22300 PF08468 Methyltransferase small domain N-terminal V130003_22320 PF00512 His Kinase A (phospho-acceptor) domain V130003_22320 PF00072 Response regulator receiver domain V130003_22320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_22320 PF00672 HAMP domain V130003_22320 PF17149 Periplasmic sensor domain found in signal transduction proteins V130003_22320 PF01627 Hpt domain V130003_22340 PF13333 Integrase core domain V130003_22340 PF13276 HTH-like domain V130003_22340 PF00665 Integrase core domain V130003_22350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V130003_22360 PF00528 Binding-protein-dependent transport system inner membrane component V130003_22370 PF12911 N-terminal TM domain of oligopeptide transport permease C V130003_22370 PF00528 Binding-protein-dependent transport system inner membrane component V130003_22380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V130003_22380 PF00005 ABC transporter V130003_22390 PF00005 ABC transporter V130003_22390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V130003_22410 PF01869 BadF/BadG/BcrA/BcrD ATPase family V130003_22420 PF02838 Glycosyl hydrolase family 20, domain 2 V130003_22420 PF00728 Glycosyl hydrolase family 20, catalytic domain V130003_22430 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain V130003_22430 PF06165 Glycosyltransferase family 36 V130003_22440 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V130003_22440 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V130003_22440 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V130003_22440 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V130003_22450 PF08402 TOBE domain V130003_22450 PF00005 ABC transporter V130003_22470 PF13416 Bacterial extracellular solute-binding protein V130003_22480 PF00909 Ammonium Transporter Family V130003_22490 PF00543 Nitrogen regulatory protein P-II V130003_22500 PF06062 Uncharacterised protein family (UPF0231) V130003_22510 PF11791 Aconitate B N-terminal domain V130003_22510 PF00330 Aconitase family (aconitate hydratase) V130003_22510 PF06434 Aconitate hydratase 2 N-terminus V130003_22520 PF01734 Patatin-like phospholipase V130003_22530 PF14814 Bifunctional transglycosylase second domain V130003_22530 PF00905 Penicillin binding protein transpeptidase domain V130003_22530 PF00912 Transglycosylase V130003_22540 PF14814 Bifunctional transglycosylase second domain V130003_22540 PF00905 Penicillin binding protein transpeptidase domain V130003_22540 PF00912 Transglycosylase V130003_22550 PF04408 Helicase associated domain (HA2) V130003_22550 PF00270 DEAD/DEAH box helicase V130003_22550 PF00271 Helicase conserved C-terminal domain V130003_22550 PF08482 ATP-dependent helicase C-terminal V130003_22570 PF03749 Sugar fermentation stimulation protein RE domain V130003_22570 PF17746 SfsA N-terminal OB domain V130003_22580 PF01258 Prokaryotic dksA/traR C4-type zinc finger V130003_22590 PF00749 tRNA synthetases class I (E and Q), catalytic domain V130003_22600 PF01743 Poly A polymerase head domain V130003_22600 PF12627 Probable RNA and SrmB- binding site of polymerase A V130003_22600 PF12626 Polymerase A arginine-rich C-terminus V130003_22610 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V130003_22620 PF02548 Ketopantoate hydroxymethyltransferase V130003_22630 PF02569 Pantoate-beta-alanine ligase V130003_22640 PF01061 ABC-2 type transporter V130003_22650 PF00005 ABC transporter V130003_22660 PF00916 Sulfate permease family V130003_22660 PF01740 STAS domain V130003_22670 PF00484 Carbonic anhydrase V130003_22680 PF00156 Phosphoribosyl transferase domain V130003_22690 PF00440 Bacterial regulatory proteins, tetR family V130003_22700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V130003_22710 PF04348 LppC putative lipoprotein V130003_22720 PF02021 Uncharacterised protein family UPF0102 V130003_22730 PF13580 SIS domain V130003_22740 PF04972 BON domain V130003_22750 PF04386 Stringent starvation protein B V130003_22760 PF02798 Glutathione S-transferase, N-terminal domain V130003_22760 PF00043 Glutathione S-transferase, C-terminal domain V130003_22770 PF02167 Cytochrome C1 family V130003_22780 PF00033 Cytochrome b/b6/petB V130003_22780 PF00032 Cytochrome b(C-terminal)/b6/petD V130003_22790 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal V130003_22790 PF00355 Rieske [2Fe-2S] domain V130003_22800 PF00380 Ribosomal protein S9/S16 V130003_22810 PF00572 Ribosomal protein L13 V130003_22820 PF03969 AFG1-like ATPase V130003_22840 PF00595 PDZ domain V130003_22850 PF13180 PDZ domain V130003_22860 PF01245 Ribosomal protein L19 V130003_22870 PF01746 tRNA (Guanine-1)-methyltransferase V130003_22880 PF05239 PRC-barrel domain V130003_22880 PF01782 RimM N-terminal domain V130003_22890 PF05239 PRC-barrel domain V130003_22890 PF01782 RimM N-terminal domain V130003_22900 PF00886 Ribosomal protein S16 V130003_22910 PF02978 Signal peptide binding domain V130003_22910 PF00448 SRP54-type protein, GTPase domain V130003_22910 PF02881 SRP54-type protein, helical bundle domain V130003_22920 PF01578 Cytochrome C assembly protein V130003_22930 PF03471 Transporter associated domain V130003_22930 PF00571 CBS domain V130003_22930 PF01595 Cyclin M transmembrane N-terminal domain V130003_22940 PF02664 S-Ribosylhomocysteinase (LuxS) V130003_22950 PF04262 Glutamate-cysteine ligase V130003_22960 PF05193 Peptidase M16 inactive domain V130003_22960 PF00675 Insulinase (Peptidase family M16) V130003_22970 PF09335 SNARE associated Golgi protein V130003_22980 PF08240 Alcohol dehydrogenase GroES-like domain V130003_22980 PF00107 Zinc-binding dehydrogenase V130003_22990 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit V130003_23000 PF00682 HMGL-like V130003_23000 PF00364 Biotin-requiring enzyme V130003_23000 PF02436 Conserved carboxylase domain V130003_23010 PF04277 Oxaloacetate decarboxylase, gamma chain V130003_23020 PF02599 Global regulator protein family V130003_23030 PF13840 ACT domain V130003_23030 PF01842 ACT domain V130003_23030 PF00696 Amino acid kinase family V130003_23040 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V130003_23040 PF01411 tRNA synthetases class II (A) V130003_23040 PF02272 DHHA1 domain V130003_23050 PF02631 RecX family V130003_23060 PF00154 recA bacterial DNA recombination protein V130003_23070 PF02464 Competence-damaged protein V130003_23080 PF00005 ABC transporter V130003_23080 PF12857 TOBE-like domain V130003_23090 PF00528 Binding-protein-dependent transport system inner membrane component V130003_23100 PF00528 Binding-protein-dependent transport system inner membrane component V130003_23120 PF00291 Pyridoxal-phosphate dependent enzyme V130003_23130 PF05188 MutS domain II V130003_23130 PF00488 MutS domain V V130003_23130 PF01624 MutS domain I V130003_23130 PF05192 MutS domain III V130003_23130 PF05190 MutS family domain IV V130003_23140 PF00140 Sigma-70 factor, region 1.2 V130003_23140 PF04542 Sigma-70 region 2 V130003_23140 PF04545 Sigma-70, region 4 V130003_23140 PF04539 Sigma-70 region 3 V130003_23150 PF01551 Peptidase family M23 V130003_23150 PF01476 LysM domain V130003_23160 PF01551 Peptidase family M23 V130003_23160 PF01476 LysM domain V130003_23180 PF01975 Survival protein SurE V130003_23190 PF01142 tRNA pseudouridine synthase D (TruD) V130003_23200 PF02542 YgbB family V130003_23210 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase V130003_23220 PF04977 Septum formation initiator V130003_23230 PF02673 Bacitracin resistance protein BacA V130003_23240 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V130003_23250 PF02152 Dihydroneopterin aldolase V130003_23260 PF02660 Glycerol-3-phosphate acyltransferase V130003_23270 PF00561 alpha/beta hydrolase fold V130003_23280 PF00814 Glycoprotease family V130003_23290 PF01165 Ribosomal protein S21 V130003_23300 PF09424 Yqey-like protein V130003_23310 PF10410 DnaB-helicase binding domain of primase V130003_23310 PF08278 DNA primase DnaG DnaB-binding V130003_23310 PF08275 DNA primase catalytic core, N-terminal domain V130003_23310 PF01807 CHC2 zinc finger V130003_23320 PF04546 Sigma-70, non-essential region V130003_23320 PF03979 Sigma-70 factor, region 1.1 V130003_23320 PF00140 Sigma-70 factor, region 1.2 V130003_23320 PF04542 Sigma-70 region 2 V130003_23320 PF04539 Sigma-70 region 3 V130003_23320 PF04545 Sigma-70, region 4 V130003_23330 PF00589 Phage integrase family V130003_23330 PF13356 Arm DNA-binding domain V130003_23340 PF01527 Transposase V130003_23350 PF00665 Integrase core domain V130003_23380 PF03480 Bacterial extracellular solute-binding protein, family 7 V130003_23390 PF01555 DNA methylase V130003_23420 PF01527 Transposase V130003_23440 PF12729 Four helix bundle sensory module for signal transduction V130003_23440 PF00672 HAMP domain V130003_23440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_23450 PF01527 Transposase V130003_23460 PF00665 Integrase core domain V130003_23470 PF02371 Transposase IS116/IS110/IS902 family V130003_23470 PF01548 Transposase V130003_23480 PF13333 Integrase core domain V130003_23480 PF00665 Integrase core domain V130003_23480 PF13276 HTH-like domain V130003_23490 PF01380 SIS domain V130003_23500 PF08220 DeoR-like helix-turn-helix domain V130003_23500 PF00455 DeoR C terminal sensor domain V130003_23510 PF02887 Pyruvate kinase, alpha/beta domain V130003_23510 PF00224 Pyruvate kinase, barrel domain V130003_23520 PF04402 Protein of unknown function (DUF541) V130003_23530 PF03466 LysR substrate binding domain V130003_23530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_23540 PF01810 LysE type translocator V130003_23550 PF00924 Mechanosensitive ion channel V130003_23550 PF05552 Conserved TM helix V130003_23560 PF01116 Fructose-bisphosphate aldolase class-II V130003_23570 PF00162 Phosphoglycerate kinase V130003_23580 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V130003_23580 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V130003_23590 PF07715 TonB-dependent Receptor Plug Domain V130003_23590 PF00593 TonB dependent receptor V130003_23600 PF03466 LysR substrate binding domain V130003_23600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_23610 PF02779 Transketolase, pyrimidine binding domain V130003_23610 PF00456 Transketolase, thiamine diphosphate binding domain V130003_23610 PF02780 Transketolase, C-terminal domain V130003_23620 PF02772 S-adenosylmethionine synthetase, central domain V130003_23620 PF00438 S-adenosylmethionine synthetase, N-terminal domain V130003_23620 PF02773 S-adenosylmethionine synthetase, C-terminal domain V130003_23630 PF10263 SprT-like family V130003_23630 PF17283 SprT-like zinc ribbon domain V130003_23640 PF04231 Endonuclease I V130003_23650 PF04452 RNA methyltransferase V130003_23660 PF02951 Prokaryotic glutathione synthetase, N-terminal domain V130003_23660 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain V130003_23670 PF02622 Uncharacterized ACR, COG1678 V130003_23680 PF03652 Holliday junction resolvase V130003_23690 PF00579 tRNA synthetases class I (W and Y) V130003_23690 PF01479 S4 domain V130003_23710 PF00437 Type II/IV secretion system protein V130003_23720 PF00437 Type II/IV secretion system protein V130003_23730 PF01168 Alanine racemase, N-terminal domain V130003_23740 PF03807 NADP oxidoreductase coenzyme F420-dependent V130003_23740 PF14748 Pyrroline-5-carboxylate reductase dimerisation V130003_23750 PF02325 YGGT family V130003_23760 PF02594 Uncharacterised ACR, YggU family COG1872 V130003_23780 PF01725 Ham1 family V130003_23790 PF06969 HemN C-terminal domain V130003_23790 PF04055 Radical SAM superfamily V130003_23800 PF04960 Glutaminase V130003_23810 PF02390 Putative methyltransferase V130003_23820 PF14815 NUDIX domain V130003_23820 PF00730 HhH-GPD superfamily base excision DNA repair protein V130003_23820 PF10576 Iron-sulfur binding domain of endonuclease III V130003_23820 PF00633 Helix-hairpin-helix motif V130003_23830 PF14815 NUDIX domain V130003_23830 PF00633 Helix-hairpin-helix motif V130003_23830 PF00730 HhH-GPD superfamily base excision DNA repair protein V130003_23840 PF04362 Bacterial Fe(2+) trafficking V130003_23850 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain V130003_23850 PF01464 Transglycosylase SLT domain V130003_23860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_23860 PF17200 Single Cache domain 2 V130003_23860 PF00672 HAMP domain V130003_23870 PF00226 DnaJ domain V130003_23870 PF05099 Tellurite resistance protein TerB V130003_23880 PF04453 LPS transport system D V130003_23880 PF03968 OstA-like protein V130003_23890 PF09312 SurA N-terminal domain V130003_23900 PF04166 Pyridoxal phosphate biosynthetic protein PdxA V130003_23910 PF00398 Ribosomal RNA adenine dimethylase V130003_23920 PF04379 ApaG domain V130003_23930 PF00149 Calcineurin-like phosphoesterase V130003_23940 PF00186 Dihydrofolate reductase V130003_23950 PF12821 Threonine/Serine exporter, ThrE V130003_23960 PF06738 Putative threonine/serine exporter V130003_23970 PF01926 50S ribosome-binding GTPase V130003_23970 PF01018 GTP1/OBG V130003_23980 PF01016 Ribosomal L27 protein V130003_23990 PF00829 Ribosomal prokaryotic L21 protein V130003_24000 PF00348 Polyprenyl synthetase V130003_24010 PF13520 Amino acid permease V130003_24020 PF00056 lactate/malate dehydrogenase, NAD binding domain V130003_24020 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain V130003_24030 PF01316 Arginine repressor, DNA binding domain V130003_24030 PF02863 Arginine repressor, C-terminal domain V130003_24040 PF16868 NMT1-like family V130003_24060 PF00582 Universal stress protein family V130003_24090 PF06877 Regulator of ribonuclease activity B V130003_24110 PF00111 2Fe-2S iron-sulfur cluster binding domain V130003_24110 PF00970 Oxidoreductase FAD-binding domain V130003_24110 PF00175 Oxidoreductase NAD-binding domain V130003_24120 PF03063 Prismane/CO dehydrogenase family V130003_24130 PF03063 Prismane/CO dehydrogenase family V130003_24140 PF01523 Putative modulator of DNA gyrase V130003_24150 PF00795 Carbon-nitrogen hydrolase V130003_24160 PF13502 AsmA-like C-terminal region V130003_24160 PF13116 Protein of unknown function V130003_24170 PF10150 Ribonuclease E/G family V130003_24170 PF00575 S1 RNA binding domain V130003_24180 PF02545 Maf-like protein V130003_24190 PF04093 rod shape-determining protein MreD V130003_24200 PF04085 rod shape-determining protein MreC V130003_24280 PF07963 Prokaryotic N-terminal methylation motif V130003_24290 PF07963 Prokaryotic N-terminal methylation motif V130003_24310 PF00482 Type II secretion system (T2SS), protein F V130003_24320 PF00437 Type II/IV secretion system protein V130003_24320 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain V130003_24340 PF13401 AAA domain V130003_24340 PF01471 Putative peptidoglycan binding domain V130003_24350 PF03958 Bacterial type II/III secretion system short domain V130003_24350 PF00263 Bacterial type II and III secretion system protein V130003_24350 PF11741 AMIN domain V130003_24350 PF07660 Secretin and TonB N terminus short domain V130003_24390 PF00990 Diguanylate cyclase, GGDEF domain V130003_24390 PF17157 Gammaproteobacterial periplasmic sensor domain V130003_24390 PF00563 EAL domain V130003_24400 PF00436 Single-strand binding protein family V130003_24410 PF00196 Bacterial regulatory proteins, luxR family V130003_24420 PF00483 Nucleotidyl transferase V130003_24430 PF00005 ABC transporter V130003_24430 PF17755 UvrA DNA-binding domain V130003_24430 PF17760 UvrA interaction domain V130003_24450 PF00266 Aminotransferase class-V V130003_24460 PF00696 Amino acid kinase family V130003_24460 PF01842 ACT domain V130003_24470 PF02574 Homocysteine S-methyltransferase V130003_24470 PF00809 Pterin binding enzyme V130003_24470 PF02607 B12 binding domain V130003_24470 PF02310 B12 binding domain V130003_24470 PF02965 Vitamin B12 dependent methionine synthase, activation domain V130003_24480 PF00999 Sodium/hydrogen exchanger family V130003_24490 PF01507 Phosphoadenosine phosphosulfate reductase family V130003_24500 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V130003_24500 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V130003_24510 PF00667 FAD binding domain V130003_24510 PF00258 Flavodoxin V130003_24510 PF00175 Oxidoreductase NAD-binding domain V130003_24540 PF09583 Phage shock protein G (Phageshock_PspG) V130003_24550 PF01207 Dihydrouridine synthase (Dus) V130003_24560 PF01207 Dihydrouridine synthase (Dus) V130003_24570 PF01475 Ferric uptake regulator family V130003_24590 PF12706 Beta-lactamase superfamily domain V130003_24600 PF00342 Phosphoglucose isomerase V130003_24610 PF01894 Uncharacterised protein family UPF0047 V130003_24620 PF00842 Alanine racemase, C-terminal domain V130003_24620 PF01168 Alanine racemase, N-terminal domain V130003_24630 PF00772 DnaB-like helicase N terminal domain V130003_24630 PF03796 DnaB-like helicase C terminal domain V130003_24650 PF01281 Ribosomal protein L9, N-terminal domain V130003_24650 PF03948 Ribosomal protein L9, C-terminal domain V130003_24660 PF01084 Ribosomal protein S18 V130003_24670 PF01250 Ribosomal protein S6 V130003_24680 PF00210 Ferritin-like domain V130003_24690 PF04324 BFD-like [2Fe-2S] binding domain V130003_24700 PF00009 Elongation factor Tu GTP binding domain V130003_24700 PF03144 Elongation factor Tu domain 2 V130003_24700 PF03143 Elongation factor Tu C-terminal domain V130003_24710 PF00679 Elongation factor G C-terminus V130003_24710 PF14492 Elongation Factor G, domain II V130003_24710 PF03764 Elongation factor G, domain IV V130003_24710 PF00009 Elongation factor Tu GTP binding domain V130003_24710 PF03144 Elongation factor Tu domain 2 V130003_24720 PF00177 Ribosomal protein S7p/S5e V130003_24730 PF00164 Ribosomal protein S12/S23 V130003_24750 PF02635 DsrE/DsrF-like family V130003_24760 PF02635 DsrE/DsrF-like family V130003_24770 PF13309 HTH domain V130003_24770 PF08348 YheO-like PAS domain V130003_24780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V130003_24780 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V130003_24800 PF04102 SlyX V130003_24810 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) V130003_24820 PF01145 SPFH domain / Band 7 family V130003_24830 PF01145 SPFH domain / Band 7 family V130003_24830 PF12221 Bacterial membrane protein N terminal V130003_24840 PF13167 GTP-binding GTPase N-terminal V130003_24840 PF16360 GTP-binding GTPase Middle Region V130003_24840 PF01926 50S ribosome-binding GTPase V130003_24850 PF17209 Hfq protein V130003_24870 PF08676 MutL C terminal dimerisation domain V130003_24870 PF01119 DNA mismatch repair protein, C-terminal domain V130003_24880 PF01520 N-acetylmuramoyl-L-alanine amidase V130003_24890 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE V130003_24900 PF08331 Domain of unknown function (DUF1730) V130003_24910 PF00929 Exonuclease V130003_24920 PF03193 RsgA GTPase V130003_24930 PF02666 Phosphatidylserine decarboxylase V130003_24940 PF00939 Sodium:sulfate symporter transmembrane region V130003_24960 PF06415 BPG-independent PGAM N-terminus (iPGM_N) V130003_24960 PF01676 Metalloenzyme superfamily V130003_24970 PF01551 Peptidase family M23 V130003_24990 PF08360 QacR-like protein, C-terminal region V130003_24990 PF00440 Bacterial regulatory proteins, tetR family V130003_25000 PF01208 Uroporphyrinogen decarboxylase (URO-D) V130003_25010 PF00293 NUDIX domain V130003_25010 PF09297 NADH pyrophosphatase zinc ribbon domain V130003_25020 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ V130003_25030 PF00623 RNA polymerase Rpb1, domain 2 V130003_25030 PF04997 RNA polymerase Rpb1, domain 1 V130003_25030 PF04983 RNA polymerase Rpb1, domain 3 V130003_25030 PF04998 RNA polymerase Rpb1, domain 5 V130003_25030 PF05000 RNA polymerase Rpb1, domain 4 V130003_25040 PF04565 RNA polymerase Rpb2, domain 3 V130003_25040 PF10385 RNA polymerase beta subunit external 1 domain V130003_25040 PF00562 RNA polymerase Rpb2, domain 6 V130003_25040 PF04560 RNA polymerase Rpb2, domain 7 V130003_25040 PF04561 RNA polymerase Rpb2, domain 2 V130003_25040 PF04563 RNA polymerase beta subunit V130003_25050 PF16320 Ribosomal protein L7/L12 dimerisation domain V130003_25050 PF00542 Ribosomal protein L7/L12 C-terminal domain V130003_25060 PF00466 Ribosomal protein L10 V130003_25070 PF00687 Ribosomal protein L1p/L10e family V130003_25080 PF00298 Ribosomal protein L11, RNA binding domain V130003_25080 PF03946 Ribosomal protein L11, N-terminal domain V130003_25090 PF00467 KOW motif V130003_25090 PF02357 Transcription termination factor nusG V130003_25100 PF00584 SecE/Sec61-gamma subunits of protein translocation complex V130003_25110 PF03143 Elongation factor Tu C-terminal domain V130003_25110 PF03144 Elongation factor Tu domain 2 V130003_25110 PF00009 Elongation factor Tu GTP binding domain V130003_25120 PF00485 Phosphoribulokinase / Uridine kinase family V130003_25130 PF03099 Biotin/lipoate A/B protein ligase family V130003_25130 PF02237 Biotin protein ligase C terminal domain V130003_25130 PF08279 HTH domain V130003_25140 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain V130003_25140 PF01565 FAD binding domain V130003_25160 PF13091 PLD-like domain V130003_25170 PF00175 Oxidoreductase NAD-binding domain V130003_25180 PF00970 Oxidoreductase FAD-binding domain V130003_25180 PF00111 2Fe-2S iron-sulfur cluster binding domain V130003_25180 PF00175 Oxidoreductase NAD-binding domain V130003_25190 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase V130003_25210 PF01797 Transposase IS200 like V130003_25220 PF07498 Rho termination factor, N-terminal domain V130003_25220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V130003_25220 PF07497 Rho termination factor, RNA-binding domain V130003_25230 PF00085 Thioredoxin V130003_25240 PF00271 Helicase conserved C-terminal domain V130003_25240 PF00270 DEAD/DEAH box helicase V130003_25250 PF02541 Ppx/GppA phosphatase family V130003_25260 PF09456 RcsC Alpha-Beta-Loop (ABL) V130003_25260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_25260 PF00072 Response regulator receiver domain V130003_25260 PF00512 His Kinase A (phospho-acceptor) domain V130003_25270 PF12832 MFS_1 like family V130003_25300 PF16177 Acetyl-coenzyme A synthetase N-terminus V130003_25300 PF00501 AMP-binding enzyme V130003_25300 PF13193 AMP-binding enzyme C-terminal domain V130003_25310 PF01220 Dehydroquinase class II V130003_25320 PF00364 Biotin-requiring enzyme V130003_25330 PF02785 Biotin carboxylase C-terminal domain V130003_25330 PF00289 Biotin carboxylase, N-terminal domain V130003_25330 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V130003_25350 PF01207 Dihydrouridine synthase (Dus) V130003_25360 PF02954 Bacterial regulatory protein, Fis family V130003_25370 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V130003_25370 PF00356 Bacterial regulatory proteins, lacI family V130003_25380 PF00920 Dehydratase family V130003_25390 PF00920 Dehydratase family V130003_25400 PF01202 Shikimate kinase V130003_25410 PF02447 GntP family permease V130003_25420 PF01081 KDPG and KHG aldolase V130003_25430 PF07715 TonB-dependent Receptor Plug Domain V130003_25430 PF00593 TonB dependent receptor V130003_25450 PF00672 HAMP domain V130003_25450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_25450 PF17200 Single Cache domain 2 V130003_25460 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain V130003_25460 PF01276 Orn/Lys/Arg decarboxylase, major domain V130003_25460 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain V130003_25470 PF13520 Amino acid permease V130003_25480 PF18500 CadC C-terminal domain 1 V130003_25480 PF00486 Transcriptional regulatory protein, C terminal V130003_25490 PF13411 MerR HTH family regulatory protein V130003_25500 PF01808 AICARFT/IMPCHase bienzyme V130003_25500 PF02142 MGS-like domain V130003_25510 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain V130003_25510 PF02843 Phosphoribosylglycinamide synthetase, C domain V130003_25510 PF02844 Phosphoribosylglycinamide synthetase, N domain V130003_25530 PF00216 Bacterial DNA-binding protein V130003_25540 PF00571 CBS domain V130003_25540 PF01595 Cyclin M transmembrane N-terminal domain V130003_25550 PF04222 Protein of unknown function (DUF416) V130003_25560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V130003_25570 PF03167 Uracil DNA glycosylase superfamily V130003_25580 PF00924 Mechanosensitive ion channel V130003_25610 PF10996 Beta-Casp domain V130003_25610 PF00753 Metallo-beta-lactamase superfamily V130003_25610 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain V130003_25630 PF02397 Bacterial sugar transferase V130003_25640 PF00535 Glycosyl transferase family 2 V130003_25650 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain V130003_25650 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain V130003_25650 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain V130003_25700 PF00535 Glycosyl transferase family 2 V130003_25720 PF13614 AAA domain V130003_25720 PF13807 G-rich domain on putative tyrosine kinase V130003_25720 PF02706 Chain length determinant protein V130003_25730 PF01451 Low molecular weight phosphotyrosine protein phosphatase V130003_25740 PF18412 Outer-membrane lipoprotein Wza C-terminal domain V130003_25740 PF10531 SLBB domain V130003_25740 PF02563 Polysaccharide biosynthesis/export protein V130003_25760 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF V130003_25780 PF06082 Exopolysaccharide biosynthesis protein YbjH V130003_25800 PF02397 Bacterial sugar transferase V130003_25810 PF01370 NAD dependent epimerase/dehydratase family V130003_25820 PF02719 Polysaccharide biosynthesis protein V130003_25840 PF04055 Radical SAM superfamily V130003_25840 PF06463 Molybdenum Cofactor Synthesis C V130003_25850 PF00534 Glycosyl transferases group 1 V130003_25850 PF13439 Glycosyltransferase Family 4 V130003_25910 PF00005 ABC transporter V130003_25930 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V130003_25940 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase V130003_25950 PF00483 Nucleotidyl transferase V130003_25960 PF16363 GDP-mannose 4,6 dehydratase V130003_25970 PF01370 NAD dependent epimerase/dehydratase family V130003_26020 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V130003_26030 PF04488 Glycosyltransferase sugar-binding region containing DXD motif V130003_26040 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) V130003_26090 PF00132 Bacterial transferase hexapeptide (six repeats) V130003_26100 PF01757 Acyltransferase family V130003_26120 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V130003_26130 PF00535 Glycosyl transferase family 2 V130003_26140 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V130003_26150 PF01467 Cytidylyltransferase-like V130003_26160 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain V130003_26160 PF06827 Zinc finger found in FPG and IleRS V130003_26160 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain V130003_26180 PF00471 Ribosomal protein L33 V130003_26190 PF00830 Ribosomal L28 family V130003_26200 PF04002 RadC-like JAB domain V130003_26210 PF00672 HAMP domain V130003_26210 PF17200 Single Cache domain 2 V130003_26210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_26220 PF02441 Flavoprotein V130003_26220 PF04127 DNA / pantothenate metabolism flavoprotein V130003_26230 PF00440 Bacterial regulatory proteins, tetR family V130003_26240 PF03279 Bacterial lipid A biosynthesis acyltransferase V130003_26250 PF03279 Bacterial lipid A biosynthesis acyltransferase V130003_26260 PF00156 Phosphoribosyl transferase domain V130003_26270 PF03725 3' exoribonuclease family, domain 2 V130003_26270 PF01138 3' exoribonuclease family, domain 1 V130003_26280 PF03755 YicC-like family, N-terminal region V130003_26280 PF08340 Domain of unknown function (DUF1732) V130003_26360 PF04002 RadC-like JAB domain V130003_26410 PF07992 Pyridine nucleotide-disulphide oxidoreductase V130003_26420 PF00916 Sulfate permease family V130003_26420 PF01740 STAS domain V130003_26440 PF00753 Metallo-beta-lactamase superfamily V130003_26450 PF00578 AhpC/TSA family V130003_26450 PF10417 C-terminal domain of 1-Cys peroxiredoxin V130003_26460 PF00075 RNase H V130003_26520 PF03350 Uncharacterized protein family, UPF0114 V130003_26530 PF01609 Transposase DDE domain V130003_26530 PF13006 Insertion element 4 transposase N-terminal V130003_26540 PF00367 phosphotransferase system, EIIB V130003_26540 PF02378 Phosphotransferase system, EIIC V130003_26550 PF13580 SIS domain V130003_26560 PF01380 SIS domain V130003_26560 PF01418 Helix-turn-helix domain, rpiR family V130003_26570 PF01032 FecCD transport family V130003_26580 PF01497 Periplasmic binding protein V130003_26590 PF00005 ABC transporter V130003_26600 PF00593 TonB dependent receptor V130003_26600 PF07715 TonB-dependent Receptor Plug Domain V130003_26610 PF00005 ABC transporter V130003_26610 PF00664 ABC transporter transmembrane region V130003_26640 PF09382 RQC domain V130003_26640 PF00570 HRDC domain V130003_26640 PF00270 DEAD/DEAH box helicase V130003_26640 PF00271 Helicase conserved C-terminal domain V130003_26640 PF16124 RecQ zinc-binding V130003_26650 PF00270 DEAD/DEAH box helicase V130003_26650 PF00271 Helicase conserved C-terminal domain V130003_26650 PF00570 HRDC domain V130003_26650 PF16124 RecQ zinc-binding V130003_26650 PF09382 RQC domain V130003_26660 PF00892 EamA-like transporter family V130003_26680 PF12833 Helix-turn-helix domain V130003_26690 PF01810 LysE type translocator V130003_26700 PF13361 UvrD-like helicase C-terminal domain V130003_26700 PF00580 UvrD/REP helicase N-terminal domain V130003_26710 PF01432 Peptidase family M3 V130003_26720 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ V130003_26730 PF07992 Pyridine nucleotide-disulphide oxidoreductase V130003_26730 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V130003_26750 PF00528 Binding-protein-dependent transport system inner membrane component V130003_26750 PF12911 N-terminal TM domain of oligopeptide transport permease C V130003_26760 PF00528 Binding-protein-dependent transport system inner membrane component V130003_26770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V130003_26780 PF00005 ABC transporter V130003_26780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V130003_26800 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V130003_26810 PF00580 UvrD/REP helicase N-terminal domain V130003_26810 PF13361 UvrD-like helicase C-terminal domain V130003_26820 PF00440 Bacterial regulatory proteins, tetR family V130003_26830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V130003_26840 PF00873 AcrB/AcrD/AcrF family V130003_26850 PF04380 Membrane fusogenic activity V130003_26860 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain V130003_26860 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain V130003_26870 PF03466 LysR substrate binding domain V130003_26870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_26890 PF12724 Flavodoxin domain V130003_26900 PF02386 Cation transport protein V130003_26910 PF01205 Uncharacterized protein family UPF0029 V130003_26910 PF09186 Domain of unknown function (DUF1949) V130003_26920 PF00378 Enoyl-CoA hydratase/isomerase V130003_26920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V130003_26920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V130003_26930 PF00108 Thiolase, N-terminal domain V130003_26930 PF02803 Thiolase, C-terminal domain V130003_26940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_26940 PF03466 LysR substrate binding domain V130003_26950 PF07690 Major Facilitator Superfamily V130003_26960 PF01609 Transposase DDE domain V130003_26960 PF13006 Insertion element 4 transposase N-terminal V130003_26970 PF00132 Bacterial transferase hexapeptide (six repeats) V130003_26970 PF12804 MobA-like NTP transferase domain V130003_26980 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain V130003_26980 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain V130003_26990 PF02874 ATP synthase alpha/beta family, beta-barrel domain V130003_26990 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V130003_27000 PF00231 ATP synthase V130003_27010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V130003_27010 PF00306 ATP synthase alpha/beta chain, C terminal domain V130003_27010 PF02874 ATP synthase alpha/beta family, beta-barrel domain V130003_27020 PF00213 ATP synthase delta (OSCP) subunit V130003_27030 PF00430 ATP synthase B/B' CF(0) V130003_27040 PF00137 ATP synthase subunit C V130003_27050 PF00119 ATP synthase A chain V130003_27060 PF03899 ATP synthase I chain V130003_27070 PF17762 HTH domain found in ParB protein V130003_27070 PF02195 ParB-like nuclease domain V130003_27080 PF13614 AAA domain V130003_27090 PF02527 rRNA small subunit methyltransferase G V130003_27100 PF01134 Glucose inhibited division protein A V130003_27100 PF13932 GidA associated domain V130003_27110 PF01134 Glucose inhibited division protein A V130003_27110 PF13932 GidA associated domain V130003_27120 PF00258 Flavodoxin V130003_27190 PF02384 N-6 DNA Methylase V130003_27280 PF00589 Phage integrase family V130003_27280 PF02899 Phage integrase, N-terminal SAM-like domain V130003_27290 PF01609 Transposase DDE domain V130003_27290 PF13006 Insertion element 4 transposase N-terminal V130003_27310 PF10396 GTP-binding protein TrmE N-terminus V130003_27310 PF12631 MnmE helical domain V130003_27310 PF01926 50S ribosome-binding GTPase V130003_27320 PF14849 YidC periplasmic domain V130003_27320 PF02096 60Kd inner membrane protein V130003_27330 PF00825 Ribonuclease P V130003_27340 PF00468 Ribosomal protein L34 V130003_27350 PF00005 ABC transporter V130003_27360 PF00528 Binding-protein-dependent transport system inner membrane component V130003_27370 PF00497 Bacterial extracellular solute-binding proteins, family 3 V130003_27420 PF01709 Transcriptional regulator V130003_27430 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase V130003_27430 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase V130003_27440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_27440 PF00672 HAMP domain V130003_27440 PF17200 Single Cache domain 2 V130003_27450 PF10928 Protein of unknown function (DUF2810) V130003_27460 PF17874 MalT-like TPR region V130003_27460 PF00196 Bacterial regulatory proteins, luxR family V130003_27470 PF00343 Carbohydrate phosphorylase V130003_27480 PF02446 4-alpha-glucanotransferase V130003_27490 PF02806 Alpha amylase, C-terminal all-beta domain V130003_27490 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V130003_27490 PF00128 Alpha amylase, catalytic domain V130003_27500 PF01797 Transposase IS200 like V130003_27510 PF05638 Type VI secretion system effector, Hcp V130003_27520 PF04717 Type VI secretion system, phage-baseplate injector V130003_27580 PF00842 Alanine racemase, C-terminal domain V130003_27580 PF01757 Acyltransferase family V130003_27580 PF01168 Alanine racemase, N-terminal domain V130003_27600 PF00939 Sodium:sulfate symporter transmembrane region V130003_27610 PF00939 Sodium:sulfate symporter transmembrane region V130003_27630 PF13006 Insertion element 4 transposase N-terminal V130003_27630 PF01609 Transposase DDE domain V130003_27640 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) V130003_27650 PF00704 Glycosyl hydrolases family 18 V130003_27650 PF08329 Chitinase A, N-terminal domain V130003_27680 PF02743 Cache domain V130003_27680 PF00672 HAMP domain V130003_27680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_27720 PF01569 PAP2 superfamily V130003_27730 PF00375 Sodium:dicarboxylate symporter family V130003_27750 PF02630 SCO1/SenC V130003_27780 PF03616 Sodium/glutamate symporter V130003_27790 PF07238 PilZ domain V130003_27790 PF12945 Flagellar protein YcgR V130003_27820 PF00990 Diguanylate cyclase, GGDEF domain V130003_27850 PF01048 Phosphorylase superfamily V130003_27860 PF08349 Protein of unknown function (DUF1722) V130003_27870 PF13411 MerR HTH family regulatory protein V130003_27880 PF03441 FAD binding domain of DNA photolyase V130003_27880 PF00875 DNA photolyase V130003_27890 PF00875 DNA photolyase V130003_27890 PF03441 FAD binding domain of DNA photolyase V130003_27900 PF17969 L,D-transpeptidase C-terminal domain V130003_27900 PF01476 LysM domain V130003_27900 PF03734 L,D-transpeptidase catalytic domain V130003_27920 PF00270 DEAD/DEAH box helicase V130003_27920 PF00271 Helicase conserved C-terminal domain V130003_27930 PF00326 Prolyl oligopeptidase family V130003_27930 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V130003_27940 PF07715 TonB-dependent Receptor Plug Domain V130003_27940 PF00593 TonB dependent receptor V130003_27980 PF12849 PBP superfamily domain V130003_27990 PF00528 Binding-protein-dependent transport system inner membrane component V130003_28000 PF00528 Binding-protein-dependent transport system inner membrane component V130003_28010 PF00005 ABC transporter V130003_28020 PF00990 Diguanylate cyclase, GGDEF domain V130003_28020 PF00563 EAL domain V130003_28020 PF03707 Bacterial signalling protein N terminal repeat V130003_28040 PF07670 Nucleoside recognition V130003_28050 PF01740 STAS domain V130003_28050 PF00916 Sulfate permease family V130003_28070 PF01476 LysM domain V130003_28070 PF08525 Opacity-associated protein A N-terminal motif V130003_28070 PF01551 Peptidase family M23 V130003_28080 PF00990 Diguanylate cyclase, GGDEF domain V130003_28080 PF13188 PAS domain V130003_28080 PF03707 Bacterial signalling protein N terminal repeat V130003_28080 PF00563 EAL domain V130003_28090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_28090 PF03466 LysR substrate binding domain V130003_28100 PF07690 Major Facilitator Superfamily V130003_28110 PF09278 MerR, DNA binding V130003_28110 PF00376 MerR family regulatory protein V130003_28150 PF00375 Sodium:dicarboxylate symporter family V130003_28170 PF02001 Protein of unknown function DUF134 V130003_28210 PF01483 Proprotein convertase P-domain V130003_28210 PF01447 Thermolysin metallopeptidase, catalytic domain V130003_28210 PF07504 Fungalysin/Thermolysin Propeptide Motif V130003_28210 PF02868 Thermolysin metallopeptidase, alpha-helical domain V130003_28230 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family V130003_28230 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain V130003_28240 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V130003_28240 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V130003_28250 PF00581 Rhodanese-like domain V130003_28260 PF00563 EAL domain V130003_28260 PF00196 Bacterial regulatory proteins, luxR family V130003_28270 PF13419 Haloacid dehalogenase-like hydrolase V130003_28280 PF00916 Sulfate permease family V130003_28280 PF01740 STAS domain V130003_28290 PF00849 RNA pseudouridylate synthase V130003_28330 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath V130003_28350 PF05947 Type VI secretion system, TssF V130003_28390 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE V130003_28410 PF17871 AAA lid domain V130003_28410 PF00004 ATPase family associated with various cellular activities (AAA) V130003_28410 PF07724 AAA domain (Cdc48 subfamily) V130003_28410 PF10431 C-terminal, D2-small domain, of ClpB protein V130003_28420 PF02954 Bacterial regulatory protein, Fis family V130003_28420 PF00158 Sigma-54 interaction domain V130003_28460 PF06761 Intracellular multiplication and human macrophage-killing V130003_28460 PF14331 ImcF-related N-terminal domain V130003_28460 PF06744 Type VI secretion protein IcmF C-terminal V130003_28490 PF01471 Putative peptidoglycan binding domain V130003_28490 PF04717 Type VI secretion system, phage-baseplate injector V130003_28530 PF05025 RbsD / FucU transport protein family V130003_28540 PF00005 ABC transporter V130003_28550 PF02653 Branched-chain amino acid transport system / permease component V130003_28560 PF13407 Periplasmic binding protein domain V130003_28570 PF00294 pfkB family carbohydrate kinase V130003_28580 PF00356 Bacterial regulatory proteins, lacI family V130003_28590 PF04973 Nicotinamide mononucleotide transporter V130003_28600 PF04973 Nicotinamide mononucleotide transporter V130003_28610 PF01048 Phosphorylase superfamily V130003_28630 PF03009 Glycerophosphoryl diester phosphodiesterase family V130003_28640 PF07690 Major Facilitator Superfamily V130003_28670 PF02743 Cache domain V130003_28670 PF00512 His Kinase A (phospho-acceptor) domain V130003_28670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_28680 PF00072 Response regulator receiver domain V130003_28680 PF00158 Sigma-54 interaction domain V130003_28680 PF02954 Bacterial regulatory protein, Fis family V130003_28710 PF01266 FAD dependent oxidoreductase V130003_28720 PF12561 ToxR activated gene A lipoprotein domain V130003_28720 PF00041 Fibronectin type III domain V130003_28730 PF01327 Polypeptide deformylase V130003_28740 PF03611 PTS system sugar-specific permease component V130003_28760 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V130003_28770 PF00356 Bacterial regulatory proteins, lacI family V130003_28780 PF00042 Globin V130003_28780 PF00175 Oxidoreductase NAD-binding domain V130003_28780 PF00970 Oxidoreductase FAD-binding domain V130003_28790 PF03334 Na+/H+ antiporter subunit V130003_28800 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) V130003_28810 PF01899 Na+/H+ ion antiporter subunit V130003_28820 PF00361 Proton-conducting membrane transporter V130003_28830 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L V130003_28840 PF13244 Domain of unknown function (DUF4040) V130003_28840 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter V130003_28840 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus V130003_28840 PF00361 Proton-conducting membrane transporter V130003_28860 PF00582 Universal stress protein family V130003_28870 PF03222 Tryptophan/tyrosine permease family V130003_28880 PF01212 Beta-eliminating lyase V130003_28890 PF12843 Putative quorum-sensing-regulated virulence factor V130003_28910 PF00563 EAL domain V130003_28910 PF08448 PAS fold V130003_28910 PF00990 Diguanylate cyclase, GGDEF domain V130003_28920 PF00313 'Cold-shock' DNA-binding domain V130003_28950 PF07584 Aerotolerance regulator N-terminal V130003_28950 PF13519 von Willebrand factor type A domain V130003_28980 PF01882 Protein of unknown function DUF58 V130003_28990 PF07726 ATPase family associated with various cellular activities (AAA) V130003_28990 PF17863 AAA lid domain V130003_29010 PF00672 HAMP domain V130003_29010 PF12729 Four helix bundle sensory module for signal transduction V130003_29010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_29040 PF07670 Nucleoside recognition V130003_29040 PF07662 Na+ dependent nucleoside transporter C-terminus V130003_29040 PF01773 Na+ dependent nucleoside transporter N-terminus V130003_29050 PF07687 Peptidase dimerisation domain V130003_29050 PF01546 Peptidase family M20/M25/M40 V130003_29070 PF01590 GAF domain V130003_29070 PF00158 Sigma-54 interaction domain V130003_29080 PF00042 Globin V130003_29080 PF00175 Oxidoreductase NAD-binding domain V130003_29080 PF00970 Oxidoreductase FAD-binding domain V130003_29090 PF00313 'Cold-shock' DNA-binding domain V130003_29100 PF03889 Alternative ribosome-rescue factor A V130003_29130 PF00072 Response regulator receiver domain V130003_29150 PF01256 Carbohydrate kinase V130003_29150 PF03853 YjeF-related protein N-terminus V130003_29160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V130003_29160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V130003_29180 PF07885 Ion channel V130003_29200 PF00478 IMP dehydrogenase / GMP reductase domain V130003_29220 PF00270 DEAD/DEAH box helicase V130003_29220 PF00271 Helicase conserved C-terminal domain V130003_29230 PF03605 Anaerobic c4-dicarboxylate membrane transporter V130003_29240 PF02540 NAD synthase V130003_29250 PF01467 Cytidylyltransferase-like V130003_29260 PF11849 Domain of unknown function (DUF3369) V130003_29270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_29270 PF00512 His Kinase A (phospho-acceptor) domain V130003_29270 PF00497 Bacterial extracellular solute-binding proteins, family 3 V130003_29290 PF03553 Na+/H+ antiporter family V130003_29300 PF07690 Major Facilitator Superfamily V130003_29310 PF00990 Diguanylate cyclase, GGDEF domain V130003_29310 PF08448 PAS fold V130003_29320 PF00657 GDSL-like Lipase/Acylhydrolase V130003_29330 PF07968 Leukocidin/Hemolysin toxin family V130003_29330 PF12563 Hemolytic toxin N terminal V130003_29330 PF16458 Beta-prism lectin V130003_29340 PF12729 Four helix bundle sensory module for signal transduction V130003_29340 PF00672 HAMP domain V130003_29340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_29350 PF00561 alpha/beta hydrolase fold V130003_29360 PF03280 Proteobacterial lipase chaperone protein V130003_29370 PF00801 PKD domain V130003_29370 PF05547 Immune inhibitor A peptidase M6 V130003_29410 PF01032 FecCD transport family V130003_29420 PF01032 FecCD transport family V130003_29430 PF00005 ABC transporter V130003_29440 PF12833 Helix-turn-helix domain V130003_29450 PF00593 TonB dependent receptor V130003_29450 PF07715 TonB-dependent Receptor Plug Domain V130003_29470 PF00871 Acetokinase family V130003_29480 PF13737 Transposase DDE domain V130003_29490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_29490 PF02743 Cache domain V130003_29490 PF00672 HAMP domain V130003_29550 PF00512 His Kinase A (phospho-acceptor) domain V130003_29550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_29550 PF00672 HAMP domain V130003_29560 PF00486 Transcriptional regulatory protein, C terminal V130003_29560 PF00072 Response regulator receiver domain V130003_29580 PF01261 Xylose isomerase-like TIM barrel V130003_29590 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family V130003_29610 PF00596 Class II Aldolase and Adducin N-terminal domain V130003_29620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V130003_29630 PF03611 PTS system sugar-specific permease component V130003_29640 PF00455 DeoR C terminal sensor domain V130003_29640 PF08220 DeoR-like helix-turn-helix domain V130003_29690 PF00486 Transcriptional regulatory protein, C terminal V130003_29690 PF00072 Response regulator receiver domain V130003_29700 PF14827 Double sensory domain of two-component sensor kinase V130003_29700 PF00672 HAMP domain V130003_29700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_29700 PF00512 His Kinase A (phospho-acceptor) domain V130003_29700 PF13426 PAS domain V130003_29730 PF00873 AcrB/AcrD/AcrF family V130003_29780 PF02743 Cache domain V130003_29780 PF00672 HAMP domain V130003_29780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_29790 PF00282 Pyridoxal-dependent decarboxylase conserved domain V130003_29800 PF07943 Penicillin-binding protein 5, C-terminal domain V130003_29800 PF00768 D-alanyl-D-alanine carboxypeptidase V130003_29830 PF00194 Eukaryotic-type carbonic anhydrase V130003_29840 PF02347 Glycine cleavage system P-protein V130003_29850 PF01597 Glycine cleavage H-protein V130003_29860 PF00464 Serine hydroxymethyltransferase V130003_29880 PF01571 Aminomethyltransferase folate-binding domain V130003_29880 PF08669 Glycine cleavage T-protein C-terminal barrel domain V130003_29890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V130003_29890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V130003_29890 PF02824 TGS domain V130003_29890 PF03129 Anticodon binding domain V130003_29900 PF00707 Translation initiation factor IF-3, C-terminal domain V130003_29900 PF05198 Translation initiation factor IF-3, N-terminal domain V130003_29910 PF01632 Ribosomal protein L35 V130003_29920 PF00453 Ribosomal protein L20 V130003_29930 PF13495 Phage integrase, N-terminal SAM-like domain V130003_29930 PF00589 Phage integrase family V130003_30010 PF13599 Pentapeptide repeats (9 copies) V130003_30040 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB V130003_30050 PF01381 Helix-turn-helix V130003_30160 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system V130003_30170 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA V130003_30260 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system V130003_30270 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system V130003_30290 PF05016 ParE toxin of type II toxin-antitoxin system, parDE V130003_30360 PF13276 HTH-like domain V130003_30360 PF00665 Integrase core domain V130003_30360 PF13333 Integrase core domain V130003_30370 PF01527 Transposase V130003_30570 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB V130003_30580 PF01381 Helix-turn-helix V130003_30690 PF01609 Transposase DDE domain V130003_30690 PF13808 DDE_Tnp_1-associated V130003_30700 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA V130003_30720 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system V130003_30730 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system V130003_30800 PF01527 Transposase V130003_30810 PF00665 Integrase core domain V130003_30850 PF05016 ParE toxin of type II toxin-antitoxin system, parDE V130003_30870 PF03477 ATP cone domain V130003_30870 PF13597 Anaerobic ribonucleoside-triphosphate reductase V130003_30890 PF00155 Aminotransferase class I and II V130003_30900 PF18030 RimK PreATP-grasp domain V130003_30900 PF08443 RimK-like ATP-grasp domain V130003_30910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V130003_30910 PF02378 Phosphotransferase system, EIIC V130003_30920 PF00294 pfkB family carbohydrate kinase V130003_30930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V130003_30930 PF00381 PTS HPr component phosphorylation site V130003_30940 PF00356 Bacterial regulatory proteins, lacI family V130003_30940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V130003_30950 PF00149 Calcineurin-like phosphoesterase V130003_30950 PF12320 Type 5 capsule protein repressor C-terminal domain V130003_30960 PF13476 AAA domain V130003_30970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_30970 PF00072 Response regulator receiver domain V130003_30980 PF00155 Aminotransferase class I and II V130003_31000 PF00654 Voltage gated chloride channel V130003_31010 PF07683 Cobalamin synthesis protein cobW C-terminal domain V130003_31010 PF02492 CobW/HypB/UreG, nucleotide-binding domain V130003_31020 PF01926 50S ribosome-binding GTPase V130003_31030 PF02705 K+ potassium transporter V130003_31040 PF10371 Domain of unknown function V130003_31040 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II V130003_31040 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase V130003_31040 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg V130003_31040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V130003_31050 PF00512 His Kinase A (phospho-acceptor) domain V130003_31050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_31050 PF02702 Osmosensitive K+ channel His kinase sensor domain V130003_31050 PF13493 Domain of unknown function (DUF4118) V130003_31060 PF00072 Response regulator receiver domain V130003_31060 PF00486 Transcriptional regulatory protein, C terminal V130003_31070 PF02416 mttA/Hcf106 family V130003_31080 PF09335 SNARE associated Golgi protein V130003_31100 PF00563 EAL domain V130003_31100 PF10388 EAL-domain associated signalling protein domain V130003_31120 PF01292 Prokaryotic cytochrome b561 V130003_31130 PF04264 YceI-like domain V130003_31140 PF01226 Formate/nitrite transporter V130003_31150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_31150 PF03466 LysR substrate binding domain V130003_31160 PF06496 Protein of unknown function (DUF1097) V130003_31170 PF11398 Protein of unknown function (DUF2813) V130003_31180 PF00149 Calcineurin-like phosphoesterase V130003_31180 PF02872 5'-nucleotidase, C-terminal domain V130003_31190 PF03741 Integral membrane protein TerC family V130003_31210 PF01797 Transposase IS200 like V130003_31220 PF03831 PhnA domain V130003_31220 PF08274 PhnA Zinc-Ribbon V130003_31280 PF00990 Diguanylate cyclase, GGDEF domain V130003_31280 PF08448 PAS fold V130003_31320 PF00990 Diguanylate cyclase, GGDEF domain V130003_31320 PF17158 Membrane-associated sensor, integral membrane domain V130003_31350 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V130003_31350 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V130003_31350 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch V130003_31360 PF02233 NAD(P) transhydrogenase beta subunit V130003_31380 PF00072 Response regulator receiver domain V130003_31380 PF00486 Transcriptional regulatory protein, C terminal V130003_31410 PF03701 Uncharacterised protein family (UPF0181) V130003_31420 PF00239 Resolvase, N terminal domain V130003_31420 PF18010 Cry35Ab1 HTH C-terminal domain V130003_31470 PF18010 Cry35Ab1 HTH C-terminal domain V130003_31470 PF00239 Resolvase, N terminal domain V130003_31520 PF01253 Translation initiation factor SUI1 V130003_31540 PF07478 D-ala D-ala ligase C-terminus V130003_31540 PF01820 D-ala D-ala ligase N-terminus V130003_31560 PF13380 CoA binding domain V130003_31560 PF13607 Succinyl-CoA ligase like flavodoxin domain V130003_31560 PF00583 Acetyltransferase (GNAT) family V130003_31570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_31570 PF03466 LysR substrate binding domain V130003_31580 PF07715 TonB-dependent Receptor Plug Domain V130003_31580 PF00593 TonB dependent receptor V130003_31590 PF04886 PT repeat V130003_31590 PF00593 TonB dependent receptor V130003_31590 PF07715 TonB-dependent Receptor Plug Domain V130003_31600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V130003_31600 PF12793 Sugar transport-related sRNA regulator N-term V130003_31620 PF03061 Thioesterase superfamily V130003_31670 PF00043 Glutathione S-transferase, C-terminal domain V130003_31670 PF02798 Glutathione S-transferase, N-terminal domain V130003_31700 PF00132 Bacterial transferase hexapeptide (six repeats) V130003_31700 PF12804 MobA-like NTP transferase domain V130003_31700 PF03479 Plants and Prokaryotes Conserved (PCC) domain V130003_31710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V130003_31710 PF00005 ABC transporter V130003_31720 PF12911 N-terminal TM domain of oligopeptide transport permease C V130003_31720 PF00528 Binding-protein-dependent transport system inner membrane component V130003_31730 PF00528 Binding-protein-dependent transport system inner membrane component V130003_31740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V130003_31790 PF00854 POT family V130003_31810 PF07702 UTRA domain V130003_31810 PF00392 Bacterial regulatory proteins, gntR family V130003_31820 PF00528 Binding-protein-dependent transport system inner membrane component V130003_31830 PF00005 ABC transporter V130003_31850 PF00266 Aminotransferase class-V V130003_31860 PF00202 Aminotransferase class-III V130003_31870 PF13419 Haloacid dehalogenase-like hydrolase V130003_31880 PF01272 Transcription elongation factor, GreA/GreB, C-term V130003_31880 PF14760 Rnk N-terminus V130003_31890 PF00128 Alpha amylase, catalytic domain V130003_31890 PF00686 Starch binding domain V130003_31900 PF00005 ABC transporter V130003_31900 PF03459 TOBE domain V130003_31900 PF17912 MalK OB fold domain V130003_31920 PF00132 Bacterial transferase hexapeptide (six repeats) V130003_31920 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD V130003_31950 PF00528 Binding-protein-dependent transport system inner membrane component V130003_31960 PF00528 Binding-protein-dependent transport system inner membrane component V130003_31970 PF16657 Maltogenic Amylase, C-terminal domain V130003_31970 PF02903 Alpha amylase, N-terminal ig-like domain V130003_31970 PF00128 Alpha amylase, catalytic domain V130003_32000 PF13419 Haloacid dehalogenase-like hydrolase V130003_32010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_32010 PF03466 LysR substrate binding domain V130003_32040 PF01741 Large-conductance mechanosensitive channel, MscL V130003_32050 PF01268 Formate--tetrahydrofolate ligase V130003_32060 PF01625 Peptide methionine sulfoxide reductase V130003_32060 PF01641 SelR domain V130003_32070 PF01227 GTP cyclohydrolase I V130003_32080 PF00994 Probable molybdopterin binding domain V130003_32080 PF03453 MoeA N-terminal region (domain I and II) V130003_32080 PF03454 MoeA C-terminal region (domain IV) V130003_32090 PF00899 ThiF family V130003_32110 PF00581 Rhodanese-like domain V130003_32120 PF08329 Chitinase A, N-terminal domain V130003_32120 PF00704 Glycosyl hydrolases family 18 V130003_32130 PF04198 Putative sugar-binding domain V130003_32140 PF00923 Transaldolase/Fructose-6-phosphate aldolase V130003_32150 PF02779 Transketolase, pyrimidine binding domain V130003_32150 PF00456 Transketolase, thiamine diphosphate binding domain V130003_32150 PF02780 Transketolase, C-terminal domain V130003_32190 PF02463 RecF/RecN/SMC N terminal domain V130003_32220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V130003_32220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V130003_32250 PF06942 GlpM protein V130003_32270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_32270 PF03466 LysR substrate binding domain V130003_32280 PF03992 Antibiotic biosynthesis monooxygenase V130003_32290 PF00881 Nitroreductase family V130003_32300 PF00873 AcrB/AcrD/AcrF family V130003_32330 PF04143 Sulphur transport V130003_32360 PF07992 Pyridine nucleotide-disulphide oxidoreductase V130003_32360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V130003_32460 PF02378 Phosphotransferase system, EIIC V130003_32460 PF00367 phosphotransferase system, EIIB V130003_32470 PF00356 Bacterial regulatory proteins, lacI family V130003_32480 PF00251 Glycosyl hydrolases family 32 N-terminal domain V130003_32480 PF08244 Glycosyl hydrolases family 32 C terminal V130003_32490 PF00294 pfkB family carbohydrate kinase V130003_32500 PF16901 C-terminal domain of alpha-glycerophosphate oxidase V130003_32500 PF01266 FAD dependent oxidoreductase V130003_32510 PF17200 Single Cache domain 2 V130003_32510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_32510 PF00672 HAMP domain V130003_32520 PF00691 OmpA family V130003_32520 PF05736 OprF membrane domain V130003_32530 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V130003_32530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V130003_32540 PF13419 Haloacid dehalogenase-like hydrolase V130003_32560 PF00672 HAMP domain V130003_32560 PF12729 Four helix bundle sensory module for signal transduction V130003_32560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_32570 PF03606 C4-dicarboxylate anaerobic carrier V130003_32580 PF03313 Serine dehydratase alpha chain V130003_32580 PF03315 Serine dehydratase beta chain V130003_32590 PF00072 Response regulator receiver domain V130003_32590 PF00196 Bacterial regulatory proteins, luxR family V130003_32600 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term V130003_32600 PF07730 Histidine kinase V130003_32600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_32600 PF00672 HAMP domain V130003_32630 PF01568 Molydopterin dinucleotide binding domain V130003_32630 PF00384 Molybdopterin oxidoreductase V130003_32630 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V130003_32640 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) V130003_32650 PF03264 NapC/NirT cytochrome c family, N-terminal region V130003_32670 PF01966 HD domain V130003_32680 PF00072 Response regulator receiver domain V130003_32680 PF00196 Bacterial regulatory proteins, luxR family V130003_32690 PF05231 MASE1 V130003_32690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_32690 PF07730 Histidine kinase V130003_32700 PF07690 Major Facilitator Superfamily V130003_32720 PF00528 Binding-protein-dependent transport system inner membrane component V130003_32730 PF00005 ABC transporter V130003_32730 PF08402 TOBE domain V130003_32740 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus V130003_32760 PF00108 Thiolase, N-terminal domain V130003_32760 PF02803 Thiolase, C-terminal domain V130003_32770 PF00106 short chain dehydrogenase V130003_32780 PF07549 SecD/SecF GG Motif V130003_32780 PF02355 Protein export membrane protein V130003_32790 PF13721 SecD export protein N-terminal TM region V130003_32790 PF07549 SecD/SecF GG Motif V130003_32790 PF02355 Protein export membrane protein V130003_32810 PF00990 Diguanylate cyclase, GGDEF domain V130003_32820 PF00483 Nucleotidyl transferase V130003_32830 PF00483 Nucleotidyl transferase V130003_32840 PF00704 Glycosyl hydrolases family 18 V130003_32840 PF06483 Chitinase C V130003_32850 PF00465 Iron-containing alcohol dehydrogenase V130003_32870 PF02954 Bacterial regulatory protein, Fis family V130003_32870 PF00072 Response regulator receiver domain V130003_32870 PF14532 Sigma-54 interaction domain V130003_32880 PF02743 Cache domain V130003_32880 PF00512 His Kinase A (phospho-acceptor) domain V130003_32880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_32900 PF07690 Major Facilitator Superfamily V130003_32910 PF00224 Pyruvate kinase, barrel domain V130003_32910 PF02887 Pyruvate kinase, alpha/beta domain V130003_32920 PF00072 Response regulator receiver domain V130003_32920 PF01627 Hpt domain V130003_32920 PF00672 HAMP domain V130003_32920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_32920 PF00512 His Kinase A (phospho-acceptor) domain V130003_32920 PF17149 Periplasmic sensor domain found in signal transduction proteins V130003_32930 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V130003_32940 PF02142 MGS-like domain V130003_32950 PF00857 Isochorismatase family V130003_32960 PF01219 Prokaryotic diacylglycerol kinase V130003_32970 PF12462 DNA helicase IV / RNA helicase N terminal V130003_32970 PF00580 UvrD/REP helicase N-terminal domain V130003_32970 PF13361 UvrD-like helicase C-terminal domain V130003_32980 PF12805 FUSC-like inner membrane protein yccS V130003_32990 PF08448 PAS fold V130003_32990 PF13188 PAS domain V130003_32990 PF00072 Response regulator receiver domain V130003_32990 PF00512 His Kinase A (phospho-acceptor) domain V130003_32990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_33040 PF00005 ABC transporter V130003_33040 PF03459 TOBE domain V130003_33050 PF00528 Binding-protein-dependent transport system inner membrane component V130003_33070 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain V130003_33070 PF07685 CobB/CobQ-like glutamine amidotransferase domain V130003_33080 PF07685 CobB/CobQ-like glutamine amidotransferase domain V130003_33080 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain V130003_33090 PF01527 Transposase V130003_33100 PF13289 SIR2-like domain V130003_33150 PF00512 His Kinase A (phospho-acceptor) domain V130003_33150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_33150 PF09308 LuxQ, periplasmic V130003_33150 PF00072 Response regulator receiver domain V130003_33160 PF13407 Periplasmic binding protein domain V130003_33180 PF01541 GIY-YIG catalytic domain V130003_33190 PF04337 Protein of unknown function, DUF480 V130003_33210 PF04363 Protein of unknown function (DUF496) V130003_33230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V130003_33230 PF00370 FGGY family of carbohydrate kinases, N-terminal domain V130003_33240 PF00230 Major intrinsic protein V130003_33250 PF01266 FAD dependent oxidoreductase V130003_33250 PF04324 BFD-like [2Fe-2S] binding domain V130003_33260 PF00890 FAD binding domain V130003_33270 PF13183 4Fe-4S dicluster domain V130003_33270 PF02754 Cysteine-rich domain V130003_33280 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V130003_33280 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V130003_33290 PF00085 Thioredoxin V130003_33300 PF07690 Major Facilitator Superfamily V130003_33320 PF00528 Binding-protein-dependent transport system inner membrane component V130003_33330 PF00528 Binding-protein-dependent transport system inner membrane component V130003_33340 PF00497 Bacterial extracellular solute-binding proteins, family 3 V130003_33350 PF00005 ABC transporter V130003_33360 PF05762 VWA domain containing CoxE-like protein V130003_33370 PF05762 VWA domain containing CoxE-like protein V130003_33380 PF12592 Protein of unknown function (DUF3763) V130003_33380 PF17868 AAA lid domain V130003_33380 PF07728 AAA domain (dynein-related subfamily) V130003_33390 PF00293 NUDIX domain V130003_33400 PF01212 Beta-eliminating lyase V130003_33410 PF00034 Cytochrome c V130003_33420 PF08361 MAATS-type transcriptional repressor, C-terminal region V130003_33420 PF00440 Bacterial regulatory proteins, tetR family V130003_33430 PF00270 DEAD/DEAH box helicase V130003_33430 PF00271 Helicase conserved C-terminal domain V130003_33440 PF04336 Acyl carrier protein phosphodiesterase V130003_33460 PF03222 Tryptophan/tyrosine permease family V130003_33470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_33470 PF00672 HAMP domain V130003_33470 PF02743 Cache domain V130003_33480 PF16363 GDP-mannose 4,6 dehydratase V130003_33490 PF03746 LamB/YcsF family V130003_33510 PF02626 Carboxyltransferase domain, subdomain A and B V130003_33530 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain V130003_33530 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain V130003_33550 PF00005 ABC transporter V130003_33560 PF13472 GDSL-like Lipase/Acylhydrolase family V130003_33570 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V130003_33570 PF07055 Enoyl reductase FAD binding domain V130003_33570 PF12241 Trans-2-enoyl-CoA reductase catalytic region V130003_33580 PF00563 EAL domain V130003_33580 PF00498 FHA domain V130003_33580 PF00990 Diguanylate cyclase, GGDEF domain V130003_33600 PF00226 DnaJ domain V130003_33600 PF01556 DnaJ C terminal domain V130003_33600 PF00684 DnaJ central domain V130003_33630 PF13419 Haloacid dehalogenase-like hydrolase V130003_33660 PF00294 pfkB family carbohydrate kinase V130003_33680 PF03880 DbpA RNA binding domain V130003_33680 PF00271 Helicase conserved C-terminal domain V130003_33680 PF00270 DEAD/DEAH box helicase V130003_33690 PF08206 Ribonuclease B OB domain V130003_33690 PF00773 RNB domain V130003_33690 PF00575 S1 RNA binding domain V130003_33710 PF12849 PBP superfamily domain V130003_33720 PF01575 MaoC like domain V130003_33730 PF04244 Deoxyribodipyrimidine photo-lyase-related protein V130003_33740 PF18416 N-acetylglucosamine binding protein domain 2 V130003_33740 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading V130003_33750 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading V130003_33750 PF18416 N-acetylglucosamine binding protein domain 2 V130003_33760 PF07504 Fungalysin/Thermolysin Propeptide Motif V130003_33760 PF03413 Peptidase propeptide and YPEB domain V130003_33760 PF01447 Thermolysin metallopeptidase, catalytic domain V130003_33760 PF02868 Thermolysin metallopeptidase, alpha-helical domain V130003_33760 PF04151 Bacterial pre-peptidase C-terminal domain V130003_33770 PF04389 Peptidase family M28 V130003_33770 PF04151 Bacterial pre-peptidase C-terminal domain V130003_33780 PF00491 Arginase family V130003_33790 PF17944 Arginine decarboxylase C-terminal helical extension V130003_33790 PF17810 Arginine decarboxylase helical bundle domain V130003_33790 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V130003_33810 PF03448 MgtE intracellular N domain V130003_33810 PF01769 Divalent cation transporter V130003_33810 PF00571 CBS domain V130003_33820 PF00166 Chaperonin 10 Kd subunit V130003_33830 PF00118 TCP-1/cpn60 chaperonin family V130003_33850 PF00696 Amino acid kinase family V130003_33850 PF13840 ACT domain V130003_33860 PF06339 Ectoine synthase V130003_33870 PF00202 Aminotransferase class-III V130003_33880 PF00583 Acetyltransferase (GNAT) family V130003_33890 PF01329 Pterin 4 alpha carbinolamine dehydratase V130003_33900 PF00351 Biopterin-dependent aromatic amino acid hydroxylase V130003_33910 PF13193 AMP-binding enzyme C-terminal domain V130003_33910 PF00501 AMP-binding enzyme V130003_33950 PF08241 Methyltransferase domain V130003_33980 PF00892 EamA-like transporter family V130003_33990 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal V130003_33990 PF00132 Bacterial transferase hexapeptide (six repeats) V130003_33990 PF14602 Hexapeptide repeat of succinyl-transferase V130003_34000 PF00571 CBS domain V130003_34000 PF03471 Transporter associated domain V130003_34000 PF01595 Cyclin M transmembrane N-terminal domain V130003_34010 PF02566 OsmC-like protein V130003_34020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V130003_34030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V130003_34030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V130003_34050 PF01810 LysE type translocator V130003_34060 PF13520 Amino acid permease V130003_34070 PF00990 Diguanylate cyclase, GGDEF domain V130003_34090 PF00248 Aldo/keto reductase family V130003_34100 PF00128 Alpha amylase, catalytic domain V130003_34130 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) V130003_34140 PF12262 Bacterial virulence factor lipase N-terminal V130003_34150 PF12262 Bacterial virulence factor lipase N-terminal V130003_34160 PF13426 PAS domain V130003_34160 PF08447 PAS fold V130003_34160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_34170 PF04151 Bacterial pre-peptidase C-terminal domain V130003_34170 PF02868 Thermolysin metallopeptidase, alpha-helical domain V130003_34170 PF01447 Thermolysin metallopeptidase, catalytic domain V130003_34170 PF03413 Peptidase propeptide and YPEB domain V130003_34170 PF07504 Fungalysin/Thermolysin Propeptide Motif V130003_34180 PF03922 OmpW family V130003_34200 PF00768 D-alanyl-D-alanine carboxypeptidase V130003_34210 PF00155 Aminotransferase class I and II V130003_34210 PF00392 Bacterial regulatory proteins, gntR family V130003_34220 PF01654 Cytochrome bd terminal oxidase subunit I V130003_34230 PF01654 Cytochrome bd terminal oxidase subunit I V130003_34240 PF02322 Cytochrome bd terminal oxidase subunit II V130003_34270 PF00291 Pyridoxal-phosphate dependent enzyme V130003_34280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_34280 PF03466 LysR substrate binding domain V130003_34360 PF08240 Alcohol dehydrogenase GroES-like domain V130003_34360 PF00107 Zinc-binding dehydrogenase V130003_34400 PF01551 Peptidase family M23 V130003_34450 PF04717 Type VI secretion system, phage-baseplate injector V130003_34460 PF05638 Type VI secretion system effector, Hcp V130003_34710 PF01758 Sodium Bile acid symporter family V130003_34720 PF01022 Bacterial regulatory protein, arsR family V130003_34750 PF06965 Na+/H+ antiporter 1 V130003_34770 PF00313 'Cold-shock' DNA-binding domain V130003_34820 PF03354 Phage Terminase V130003_34850 PF01381 Helix-turn-helix V130003_34850 PF00717 Peptidase S24-like V130003_34880 PF12167 Arm DNA-binding domain V130003_34880 PF00589 Phage integrase family V130003_34890 PF00145 C-5 cytosine-specific DNA methylase V130003_34900 PF00145 C-5 cytosine-specific DNA methylase V130003_34930 PF08240 Alcohol dehydrogenase GroES-like domain V130003_34930 PF00107 Zinc-binding dehydrogenase V130003_34940 PF00155 Aminotransferase class I and II V130003_34950 PF01053 Cys/Met metabolism PLP-dependent enzyme V130003_34960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_34960 PF03466 LysR substrate binding domain V130003_34970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V130003_35020 PF01966 HD domain V130003_35030 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain V130003_35030 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain V130003_35040 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain V130003_35040 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain V130003_35050 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase V130003_35060 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain V130003_35060 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase V130003_35110 PF02595 Glycerate kinase family V130003_35120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_35120 PF00672 HAMP domain V130003_35130 PF01243 Pyridoxamine 5'-phosphate oxidase V130003_35140 PF06228 Haem utilisation ChuX/HutX V130003_35150 PF04055 Radical SAM superfamily V130003_35160 PF03544 Gram-negative bacterial TonB protein C-terminal V130003_35170 PF01618 MotA/TolQ/ExbB proton channel family V130003_35180 PF02472 Biopolymer transport protein ExbD/TolR V130003_35190 PF01497 Periplasmic binding protein V130003_35200 PF01032 FecCD transport family V130003_35210 PF00005 ABC transporter V130003_35270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_35270 PF00672 HAMP domain V130003_35270 PF02743 Cache domain V130003_35280 PF03476 MOSC N-terminal beta barrel domain V130003_35280 PF03473 MOSC domain V130003_35280 PF00111 2Fe-2S iron-sulfur cluster binding domain V130003_35280 PF03473 MOSC domain V130003_35280 PF03476 MOSC N-terminal beta barrel domain V130003_35280 PF00111 2Fe-2S iron-sulfur cluster binding domain V130003_35290 PF01979 Amidohydrolase family V130003_35310 PF05656 Protein of unknown function (DUF805) V130003_35330 PF05958 tRNA (Uracil-5-)-methyltransferase V130003_35340 PF05661 Protein of unknown function (DUF808) V130003_35360 PF00313 'Cold-shock' DNA-binding domain V130003_35410 PF08448 PAS fold V130003_35410 PF00990 Diguanylate cyclase, GGDEF domain V130003_35420 PF00990 Diguanylate cyclase, GGDEF domain V130003_35420 PF08448 PAS fold V130003_35430 PF00455 DeoR C terminal sensor domain V130003_35430 PF08220 DeoR-like helix-turn-helix domain V130003_35460 PF00528 Binding-protein-dependent transport system inner membrane component V130003_35470 PF00528 Binding-protein-dependent transport system inner membrane component V130003_35470 PF14785 Maltose transport system permease protein MalF P2 domain V130003_35480 PF01547 Bacterial extracellular solute-binding protein V130003_35490 PF08402 TOBE domain V130003_35490 PF00005 ABC transporter V130003_35500 PF13302 Acetyltransferase (GNAT) domain V130003_35530 PF01906 Putative heavy-metal-binding V130003_35540 PF00196 Bacterial regulatory proteins, luxR family V130003_35560 PF00072 Response regulator receiver domain V130003_35560 PF01584 CheW-like domain V130003_35570 PF01047 MarR family V130003_35580 PF00990 Diguanylate cyclase, GGDEF domain V130003_35610 PF03707 Bacterial signalling protein N terminal repeat V130003_35610 PF00990 Diguanylate cyclase, GGDEF domain V130003_35610 PF00563 EAL domain V130003_35650 PF03466 LysR substrate binding domain V130003_35650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_35660 PF00990 Diguanylate cyclase, GGDEF domain V130003_35660 PF00563 EAL domain V130003_35680 PF05726 Pirin C-terminal cupin domain V130003_35680 PF02678 Pirin V130003_35690 PF06865 Pyrimidine/purine nucleoside phosphorylase V130003_35710 PF07690 Major Facilitator Superfamily V130003_35730 PF00672 HAMP domain V130003_35730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_35730 PF12729 Four helix bundle sensory module for signal transduction V130003_35740 PF13654 AAA domain V130003_35740 PF05362 Lon protease (S16) C-terminal proteolytic domain V130003_35760 PF00005 ABC transporter V130003_35760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V130003_35770 PF00497 Bacterial extracellular solute-binding proteins, family 3 V130003_35780 PF17200 Single Cache domain 2 V130003_35780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_35780 PF00672 HAMP domain V130003_35800 PF03466 LysR substrate binding domain V130003_35800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_35810 PF02652 L-lactate permease V130003_35820 PF01070 FMN-dependent dehydrogenase V130003_35840 PF03618 Kinase/pyrophosphorylase V130003_35850 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain V130003_35850 PF02896 PEP-utilising enzyme, TIM barrel domain V130003_35850 PF00391 PEP-utilising enzyme, mobile domain V130003_35860 PF08447 PAS fold V130003_35860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_35880 PF01554 MatE V130003_35890 PF00270 DEAD/DEAH box helicase V130003_35890 PF00271 Helicase conserved C-terminal domain V130003_35900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_35900 PF03466 LysR substrate binding domain V130003_35920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V130003_35940 PF00664 ABC transporter transmembrane region V130003_35940 PF00005 ABC transporter V130003_35970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V130003_35990 PF01810 LysE type translocator V130003_36000 PF12833 Helix-turn-helix domain V130003_36030 PF01557 Fumarylacetoacetate (FAA) hydrolase family V130003_36040 PF01047 MarR family V130003_36050 PF02566 OsmC-like protein V130003_36060 PF13609 Gram-negative porin V130003_36070 PF00892 EamA-like transporter family V130003_36080 PF00462 Glutaredoxin V130003_36090 PF07670 Nucleoside recognition V130003_36100 PF07670 Nucleoside recognition V130003_36110 PF03600 Citrate transporter V130003_36130 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V130003_36130 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain V130003_36140 PF00730 HhH-GPD superfamily base excision DNA repair protein V130003_36140 PF06029 AlkA N-terminal domain V130003_36150 PF07681 DoxX V130003_36160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_36160 PF03466 LysR substrate binding domain V130003_36200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase V130003_36220 PF07148 Maltose operon periplasmic protein precursor (MalM) V130003_36230 PF02264 LamB porin V130003_36240 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V130003_36240 PF00128 Alpha amylase, catalytic domain V130003_36260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_36260 PF00672 HAMP domain V130003_36260 PF12729 Four helix bundle sensory module for signal transduction V130003_36280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_36280 PF00672 HAMP domain V130003_36300 PF07694 5TMR of 5TMR-LYT V130003_36300 PF00990 Diguanylate cyclase, GGDEF domain V130003_36330 PF00665 Integrase core domain V130003_36340 PF01527 Transposase V130003_36360 PF13333 Integrase core domain V130003_36360 PF00665 Integrase core domain V130003_36360 PF13276 HTH-like domain V130003_36370 PF00793 DAHP synthetase I family V130003_36380 PF00005 ABC transporter V130003_36390 PF00528 Binding-protein-dependent transport system inner membrane component V130003_36400 PF00497 Bacterial extracellular solute-binding proteins, family 3 V130003_36410 PF00528 Binding-protein-dependent transport system inner membrane component V130003_36420 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V130003_36420 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V130003_36420 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V130003_36420 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V130003_36430 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V130003_36430 PF02378 Phosphotransferase system, EIIC V130003_36430 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V130003_36440 PF01232 Mannitol dehydrogenase Rossmann domain V130003_36440 PF08125 Mannitol dehydrogenase C-terminal domain V130003_36450 PF05068 Mannitol repressor V130003_36460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V130003_36520 PF13460 NAD(P)H-binding V130003_36530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_36530 PF03466 LysR substrate binding domain V130003_36540 PF00672 HAMP domain V130003_36540 PF02743 Cache domain V130003_36540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_36550 PF00106 short chain dehydrogenase V130003_36560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V130003_36560 PF03466 LysR substrate binding domain V130003_36570 PF04013 Putative SAM-dependent RNA methyltransferase V130003_36580 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V130003_36590 PF13520 Amino acid permease V130003_36600 PF01276 Orn/Lys/Arg decarboxylase, major domain V130003_36600 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain V130003_36600 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain V130003_36610 PF00171 Aldehyde dehydrogenase family V130003_36620 PF01037 Lrp/AsnC ligand binding domain V130003_36630 PF02743 Cache domain V130003_36630 PF00672 HAMP domain V130003_36630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_36650 PF00474 Sodium:solute symporter family V130003_36670 PF00171 Aldehyde dehydrogenase family V130003_36670 PF18327 Proline utilization A proline dehydrogenase N-terminal domain V130003_36670 PF14850 DNA-binding domain of Proline dehydrogenase V130003_36670 PF01619 Proline dehydrogenase V130003_36680 PF12833 Helix-turn-helix domain V130003_36700 PF03781 Sulfatase-modifying factor enzyme 1 V130003_36710 PF00072 Response regulator receiver domain V130003_36710 PF00196 Bacterial regulatory proteins, luxR family V130003_36720 PF01243 Pyridoxamine 5'-phosphate oxidase V130003_36720 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region V130003_36730 PF00529 HlyD membrane-fusion protein of T1SS V130003_36760 PF00664 ABC transporter transmembrane region V130003_36760 PF00005 ABC transporter V130003_36760 PF03412 Peptidase C39 family V130003_36780 PF00486 Transcriptional regulatory protein, C terminal V130003_36780 PF00072 Response regulator receiver domain V130003_36800 PF02743 Cache domain V130003_36800 PF00672 HAMP domain V130003_36800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_36810 PF00072 Response regulator receiver domain V130003_36810 PF01339 CheB methylesterase V130003_36820 PF03975 CheD chemotactic sensory transduction V130003_36830 PF01739 CheR methyltransferase, SAM binding domain V130003_36830 PF03705 CheR methyltransferase, all-alpha domain V130003_36840 PF02203 Tar ligand binding domain homologue V130003_36840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V130003_36840 PF00672 HAMP domain V130003_36860 PF01584 CheW-like domain V130003_36870 PF01584 CheW-like domain V130003_36880 PF01627 Hpt domain V130003_36880 PF01584 CheW-like domain V130003_36880 PF09078 CheY binding V130003_36880 PF02895 Signal transducing histidine kinase, homodimeric domain V130003_36880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_36890 PF00072 Response regulator receiver domain V130003_36920 PF00528 Binding-protein-dependent transport system inner membrane component V130003_36930 PF00528 Binding-protein-dependent transport system inner membrane component V130003_36930 PF12911 N-terminal TM domain of oligopeptide transport permease C V130003_36940 PF00005 ABC transporter V130003_36940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V130003_36950 PF08019 Phosphoethanolamine transferase EptA/EptB V130003_36950 PF00884 Sulfatase V130003_36960 PF08521 Two-component sensor kinase N-terminal V130003_36960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V130003_36960 PF00512 His Kinase A (phospho-acceptor) domain V130003_36970 PF00072 Response regulator receiver domain V130003_36970 PF00486 Transcriptional regulatory protein, C terminal V130003_37010 PF00501 AMP-binding enzyme V130003_37030 PF13718 GNAT acetyltransferase 2 V130003_37030 PF05127 Helicase V130003_37040 PF13416 Bacterial extracellular solute-binding protein V130003_37050 PF08775 ParB family V130003_37050 PF02195 ParB-like nuclease domain V130003_37060 PF13614 AAA domain V130003_37060 PF18607 ParA helix turn helix domain