locus-tag class description HPY12_00005 PF00308 Bacterial dnaA protein HPY12_00005 PF11638 DnaA N-terminal domain HPY12_00005 PF08299 Bacterial dnaA protein helix-turn-helix HPY12_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HPY12_00010 PF02767 DNA polymerase III beta subunit, central domain HPY12_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HPY12_00015 PF02463 RecF/RecN/SMC N terminal domain HPY12_00020 PF00204 DNA gyrase B HPY12_00020 PF00986 DNA gyrase B subunit, carboxyl terminus HPY12_00020 PF18053 DNA gyrase B subunit insert domain HPY12_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_00020 PF01751 Toprim domain HPY12_00030 PF00011 Hsp20/alpha crystallin family HPY12_00035 PF00155 Aminotransferase class I and II HPY12_00040 PF02092 Glycyl-tRNA synthetase beta subunit HPY12_00040 PF05746 DALR anticodon binding domain HPY12_00045 PF02091 Glycyl-tRNA synthetase alpha subunit HPY12_00050 PF01169 Uncharacterized protein family UPF0016 HPY12_00060 PF01206 Sulfurtransferase TusA HPY12_00070 PF00107 Zinc-binding dehydrogenase HPY12_00070 PF08240 Alcohol dehydrogenase GroES-like domain HPY12_00075 PF00291 Pyridoxal-phosphate dependent enzyme HPY12_00075 PF00585 C-terminal regulatory domain of Threonine dehydratase HPY12_00080 PF00920 Dehydratase family HPY12_00085 PF01063 Amino-transferase class IV HPY12_00095 PF00205 Thiamine pyrophosphate enzyme, central domain HPY12_00095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY12_00095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY12_00100 PF13335 Magnesium chelatase, subunit ChlI C-terminal HPY12_00100 PF01078 Magnesium chelatase, subunit ChlI HPY12_00105 PF01553 Acyltransferase HPY12_00110 PF01323 DSBA-like thioredoxin domain HPY12_00115 PF01636 Phosphotransferase enzyme family HPY12_00120 PF12801 4Fe-4S binding domain HPY12_00120 PF13746 4Fe-4S dicluster domain HPY12_00120 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HPY12_00125 PF06288 Protein of unknown function (DUF1040) HPY12_00130 PF07070 SpoOM protein HPY12_00135 PF03006 Haemolysin-III related HPY12_00145 PF02386 Cation transport protein HPY12_00150 PF02080 TrkA-C domain HPY12_00150 PF02254 TrkA-N domain HPY12_00155 PF01029 NusB family HPY12_00155 PF01189 16S rRNA methyltransferase RsmB/F HPY12_00160 PF00551 Formyl transferase HPY12_00160 PF02911 Formyl transferase, C-terminal domain HPY12_00165 PF01327 Polypeptide deformylase HPY12_00170 PF01476 LysM domain HPY12_00175 PF17782 DprA winged helix domain HPY12_00175 PF02481 DNA recombination-mediator protein A HPY12_00180 PF04361 Protein of unknown function (DUF494) HPY12_00185 PF01396 Topoisomerase DNA binding C4 zinc finger HPY12_00195 PF00731 AIR carboxylase HPY12_00200 PF01300 Telomere recombination HPY12_00205 PF01218 Coproporphyrinogen III oxidase HPY12_00210 PF08501 Shikimate dehydrogenase substrate binding domain HPY12_00210 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HPY12_00210 PF01488 Shikimate / quinate 5-dehydrogenase HPY12_00220 PF00132 Bacterial transferase hexapeptide (six repeats) HPY12_00260 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HPY12_00265 PF13667 ThiC-associated domain HPY12_00265 PF01964 Radical SAM ThiC family HPY12_00270 PF02581 Thiamine monophosphate synthase HPY12_00275 PF00899 ThiF family HPY12_00280 PF02597 ThiS family HPY12_00285 PF05690 Thiazole biosynthesis protein ThiG HPY12_00290 PF06968 Biotin and Thiamin Synthesis associated domain HPY12_00290 PF04055 Radical SAM superfamily HPY12_00295 PF01321 Creatinase/Prolidase N-terminal domain HPY12_00295 PF01321 Creatinase/Prolidase N-terminal domain HPY12_00295 PF00557 Metallopeptidase family M24 HPY12_00295 PF00557 Metallopeptidase family M24 HPY12_00300 PF03466 LysR substrate binding domain HPY12_00300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_00305 PF07690 Major Facilitator Superfamily HPY12_00315 PF01037 Lrp/AsnC ligand binding domain HPY12_00320 PF00563 EAL domain HPY12_00320 PF00990 Diguanylate cyclase, GGDEF domain HPY12_00320 PF08448 PAS fold HPY12_00325 PF04445 Putative SAM-dependent methyltransferase HPY12_00335 PF00892 EamA-like transporter family HPY12_00340 PF00582 Universal stress protein family HPY12_00345 PF00210 Ferritin-like domain HPY12_00350 PF10625 Universal stress protein B (UspB) HPY12_00365 PF02646 RmuC family HPY12_00370 PF01209 ubiE/COQ5 methyltransferase family HPY12_00375 PF02036 SCP-2 sterol transfer family HPY12_00380 PF03109 ABC1 family HPY12_00385 PF02416 mttA/Hcf106 family HPY12_00390 PF02416 mttA/Hcf106 family HPY12_00395 PF00902 Sec-independent protein translocase protein (TatC) HPY12_00400 PF00034 Cytochrome c HPY12_00400 PF03150 Di-haem cytochrome c peroxidase HPY12_00405 PF01554 MatE HPY12_00415 PF01726 LexA DNA binding domain HPY12_00415 PF00717 Peptidase S24-like HPY12_00420 PF01553 Acyltransferase HPY12_00425 PF01040 UbiA prenyltransferase family HPY12_00430 PF04345 Chorismate lyase HPY12_00440 PF02203 Tar ligand binding domain homologue HPY12_00440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_00440 PF00672 HAMP domain HPY12_00445 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HPY12_00445 PF01694 Rhomboid family HPY12_00450 PF00581 Rhodanese-like domain HPY12_00455 PF01026 TatD related DNase HPY12_00460 PF00490 Delta-aminolevulinic acid dehydratase HPY12_00470 PF00476 DNA polymerase family A HPY12_00470 PF01612 3'-5' exonuclease HPY12_00470 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY12_00470 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY12_00475 PF01926 50S ribosome-binding GTPase HPY12_00480 PF00034 Cytochrome c HPY12_00490 PF04220 Der GTPase activator (YihI) HPY12_00495 PF10675 Protein of unknown function (DUF2489) HPY12_00500 PF06969 HemN C-terminal domain HPY12_00500 PF04055 Radical SAM superfamily HPY12_00505 PF07219 HemY protein N-terminus HPY12_00510 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HPY12_00515 PF02602 Uroporphyrinogen-III synthase HemD HPY12_00520 PF03900 Porphobilinogen deaminase, C-terminal domain HPY12_00520 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HPY12_00525 PF01295 Adenylate cyclase, class-I HPY12_00525 PF12633 Adenylate cyclase NT domain HPY12_00530 PF01491 Frataxin-like domain HPY12_00540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY12_00540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HPY12_00545 PF01678 Diaminopimelate epimerase HPY12_00550 PF04340 Protein of unknown function, DUF484 HPY12_00555 PF02899 Phage integrase, N-terminal SAM-like domain HPY12_00555 PF00589 Phage integrase family HPY12_00560 PF13419 Haloacid dehalogenase-like hydrolase HPY12_00565 PF00563 EAL domain HPY12_00565 PF10442 FIST C domain HPY12_00565 PF00990 Diguanylate cyclase, GGDEF domain HPY12_00565 PF08495 FIST N domain HPY12_00585 PF12146 Serine aminopeptidase, S33 HPY12_00590 PF01810 LysE type translocator HPY12_00595 PF00563 EAL domain HPY12_00595 PF08668 HDOD domain HPY12_00600 PF00210 Ferritin-like domain HPY12_00635 PF00448 SRP54-type protein, GTPase domain HPY12_00635 PF02881 SRP54-type protein, helical bundle domain HPY12_00640 PF00005 ABC transporter HPY12_00645 PF18075 FtsX extracellular domain HPY12_00650 PF04542 Sigma-70 region 2 HPY12_00650 PF04545 Sigma-70, region 4 HPY12_00650 PF00140 Sigma-70 factor, region 1.2 HPY12_00655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY12_00655 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY12_00660 PF00440 Bacterial regulatory proteins, tetR family HPY12_00670 PF05958 tRNA (Uracil-5-)-methyltransferase HPY12_00675 PF07715 TonB-dependent Receptor Plug Domain HPY12_00675 PF00593 TonB dependent receptor HPY12_00680 PF05922 Peptidase inhibitor I9 HPY12_00680 PF04151 Bacterial pre-peptidase C-terminal domain HPY12_00680 PF00082 Subtilase family HPY12_00685 PF01177 Asp/Glu/Hydantoin racemase HPY12_00755 PF00962 Adenosine/AMP deaminase HPY12_00760 PF00990 Diguanylate cyclase, GGDEF domain HPY12_00760 PF03707 Bacterial signalling protein N terminal repeat HPY12_00760 PF13188 PAS domain HPY12_00760 PF00563 EAL domain HPY12_00765 PF02954 Bacterial regulatory protein, Fis family HPY12_00765 PF00072 Response regulator receiver domain HPY12_00765 PF00158 Sigma-54 interaction domain HPY12_00770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_00770 PF00512 His Kinase A (phospho-acceptor) domain HPY12_00770 PF00989 PAS fold HPY12_00780 PF00120 Glutamine synthetase, catalytic domain HPY12_00780 PF03951 Glutamine synthetase, beta-Grasp domain HPY12_00800 PF03631 Virulence factor BrkB HPY12_00805 PF02580 D-Tyr-tRNA(Tyr) deacylase HPY12_00810 PF00583 Acetyltransferase (GNAT) family HPY12_00810 PF09500 Putative thioesterase (yiiD_Cterm) HPY12_00820 PF01293 Phosphoenolpyruvate carboxykinase HPY12_00825 PF01430 Hsp33 protein HPY12_00830 PF01479 S4 domain HPY12_00835 PF11356 Type II secretion system protein C HPY12_00840 PF03958 Bacterial type II/III secretion system short domain HPY12_00840 PF00263 Bacterial type II and III secretion system protein HPY12_00845 PF00437 Type II/IV secretion system protein HPY12_00850 PF00482 Type II secretion system (T2SS), protein F HPY12_00855 PF08334 Type II secretion system (T2SS), protein G HPY12_00855 PF07963 Prokaryotic N-terminal methylation motif HPY12_00860 PF12019 Type II transport protein GspH HPY12_00865 PF07963 Prokaryotic N-terminal methylation motif HPY12_00865 PF02501 Type II secretion system (T2SS), protein I HPY12_00870 PF11612 Type II secretion system (T2SS), protein J HPY12_00870 PF07963 Prokaryotic N-terminal methylation motif HPY12_00875 PF03934 Type II secretion system (T2SS), protein K HPY12_00880 PF12693 GspL periplasmic domain HPY12_00880 PF05134 Type II secretion system (T2SS), protein L HPY12_00885 PF04612 Type II secretion system (T2SS), protein M HPY12_00890 PF01203 Type II secretion system (T2SS), protein N HPY12_00895 PF00459 Inositol monophosphatase family HPY12_00900 PF00293 NUDIX domain HPY12_00905 PF01521 Iron-sulphur cluster biosynthesis HPY12_00905 PF01106 NifU-like domain HPY12_00910 PF00156 Phosphoribosyl transferase domain HPY12_00920 PF00561 alpha/beta hydrolase fold HPY12_00930 PF17674 HHH domain HPY12_00930 PF00575 S1 RNA binding domain HPY12_00930 PF09371 Tex-like protein N-terminal domain HPY12_00930 PF16921 Tex protein YqgF-like domain HPY12_00935 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY12_00935 PF03449 Transcription elongation factor, N-terminal HPY12_00940 PF00072 Response regulator receiver domain HPY12_00940 PF00486 Transcriptional regulatory protein, C terminal HPY12_00945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_00945 PF00672 HAMP domain HPY12_00945 PF00512 His Kinase A (phospho-acceptor) domain HPY12_00950 PF00860 Permease family HPY12_00955 PF00270 DEAD/DEAH box helicase HPY12_00955 PF17191 RecG wedge domain HPY12_00955 PF00271 Helicase conserved C-terminal domain HPY12_00960 PF13291 ACT domain HPY12_00960 PF02824 TGS domain HPY12_00960 PF04607 Region found in RelA / SpoT proteins HPY12_00965 PF01192 RNA polymerase Rpb6 HPY12_00970 PF00625 Guanylate kinase HPY12_00975 PF02592 Putative vitamin uptake transporter HPY12_00980 PF00474 Sodium:solute symporter family HPY12_00990 PF03471 Transporter associated domain HPY12_00990 PF00999 Sodium/hydrogen exchanger family HPY12_00990 PF02080 TrkA-C domain HPY12_00995 PF00072 Response regulator receiver domain HPY12_00995 PF00196 Bacterial regulatory proteins, luxR family HPY12_01000 PF11412 Disulphide bond corrector protein DsbC HPY12_01000 PF02683 Cytochrome C biogenesis protein transmembrane region HPY12_01005 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY12_01005 PF11852 Domain of unknown function (DUF3372) HPY12_01005 PF03714 Bacterial pullanase-associated domain HPY12_01005 PF18494 Pullulanase Ins domain HPY12_01005 PF17967 Pullulanase N2 domain HPY12_01010 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY12_01015 PF00206 Lyase HPY12_01015 PF10415 Fumarase C C-terminus HPY12_01020 PF17158 Membrane-associated sensor, integral membrane domain HPY12_01020 PF00990 Diguanylate cyclase, GGDEF domain HPY12_01025 PF04186 FxsA cytoplasmic membrane protein HPY12_01030 PF00588 SpoU rRNA Methylase family HPY12_01035 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY12_01035 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY12_01040 PF00512 His Kinase A (phospho-acceptor) domain HPY12_01040 PF16527 Two-component sensor protein CpxA, periplasmic domain HPY12_01040 PF00672 HAMP domain HPY12_01040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_01045 PF00486 Transcriptional regulatory protein, C terminal HPY12_01045 PF00072 Response regulator receiver domain HPY12_01055 PF16916 Dimerisation domain of Zinc Transporter HPY12_01055 PF01545 Cation efflux family HPY12_01060 PF00365 Phosphofructokinase HPY12_01065 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HPY12_01070 PF06005 Cell division protein ZapB HPY12_01075 PF02219 Methylenetetrahydrofolate reductase HPY12_01080 PF00742 Homoserine dehydrogenase HPY12_01080 PF00696 Amino acid kinase family HPY12_01080 PF03447 Homoserine dehydrogenase, NAD binding domain HPY12_01085 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY12_01090 PF01340 Met Apo-repressor, MetJ HPY12_01095 PF03949 Malic enzyme, NAD binding domain HPY12_01095 PF00390 Malic enzyme, N-terminal domain HPY12_01100 PF01197 Ribosomal protein L31 HPY12_01105 PF00270 DEAD/DEAH box helicase HPY12_01105 PF00271 Helicase conserved C-terminal domain HPY12_01105 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HPY12_01105 PF17764 3′ DNA-binding domain (3′BD) HPY12_01105 PF18074 Primosomal protein N C-terminal domain HPY12_01110 PF00356 Bacterial regulatory proteins, lacI family HPY12_01115 PF05036 Sporulation related domain HPY12_01120 PF00227 Proteasome subunit HPY12_01125 PF10431 C-terminal, D2-small domain, of ClpB protein HPY12_01125 PF00004 ATPase family associated with various cellular activities (AAA) HPY12_01125 PF07724 AAA domain (Cdc48 subfamily) HPY12_01130 PF01040 UbiA prenyltransferase family HPY12_01135 PF03737 Aldolase/RraA HPY12_01140 PF01554 MatE HPY12_01145 PF00121 Triosephosphate isomerase HPY12_01165 PF08220 DeoR-like helix-turn-helix domain HPY12_01165 PF00455 DeoR C terminal sensor domain HPY12_01170 PF00166 Chaperonin 10 Kd subunit HPY12_01175 PF00118 TCP-1/cpn60 chaperonin family HPY12_01185 PF04055 Radical SAM superfamily HPY12_01190 PF01132 Elongation factor P (EF-P) OB domain HPY12_01190 PF09285 Elongation factor P, C-terminal HPY12_01190 PF08207 Elongation factor P (EF-P) KOW-like domain HPY12_01195 PF02313 Fumarate reductase subunit D HPY12_01200 PF02300 Fumarate reductase subunit C HPY12_01205 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY12_01205 PF13183 4Fe-4S dicluster domain HPY12_01210 PF00890 FAD binding domain HPY12_01210 PF02910 Fumarate reductase flavoprotein C-term HPY12_01215 PF00152 tRNA synthetases class II (D, K and N) HPY12_01220 PF00581 Rhodanese-like domain HPY12_01225 PF02556 Preprotein translocase subunit SecB HPY12_01230 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HPY12_01230 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HPY12_01235 PF00132 Bacterial transferase hexapeptide (six repeats) HPY12_01235 PF06426 Serine acetyltransferase, N-terminal HPY12_01245 PF00311 Phosphoenolpyruvate carboxylase HPY12_01250 PF01546 Peptidase family M20/M25/M40 HPY12_01250 PF07687 Peptidase dimerisation domain HPY12_01255 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY12_01255 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY12_01260 PF00696 Amino acid kinase family HPY12_01265 PF00764 Arginosuccinate synthase HPY12_01270 PF14698 Argininosuccinate lyase C-terminal HPY12_01270 PF00206 Lyase HPY12_01280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY12_01280 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY12_01285 PF00462 Glutaredoxin HPY12_01285 PF08534 Redoxin HPY12_01290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_01290 PF03466 LysR substrate binding domain HPY12_01295 PF17092 Penicillin-binding protein OB-like domain HPY12_01295 PF00912 Transglycosylase HPY12_01295 PF00905 Penicillin binding protein transpeptidase domain HPY12_01320 PF00263 Bacterial type II and III secretion system protein HPY12_01320 PF07660 Secretin and TonB N terminus short domain HPY12_01320 PF11741 AMIN domain HPY12_01320 PF03958 Bacterial type II/III secretion system short domain HPY12_01325 PF01202 Shikimate kinase HPY12_01330 PF01761 3-dehydroquinate synthase HPY12_01340 PF02086 D12 class N6 adenine-specific DNA methyltransferase HPY12_01345 PF00834 Ribulose-phosphate 3 epimerase family HPY12_01350 PF13419 Haloacid dehalogenase-like hydrolase HPY12_01355 PF00579 tRNA synthetases class I (W and Y) HPY12_01370 PF04055 Radical SAM superfamily HPY12_01370 PF00919 Uncharacterized protein family UPF0004 HPY12_01370 PF18693 TRAM domain HPY12_01375 PF00117 Glutamine amidotransferase class-I HPY12_01380 PF00202 Aminotransferase class-III HPY12_01385 PF04958 Arginine N-succinyltransferase beta subunit HPY12_01390 PF00171 Aldehyde dehydrogenase family HPY12_01400 PF00027 Cyclic nucleotide-binding domain HPY12_01400 PF13545 Crp-like helix-turn-helix domain HPY12_01405 PF00485 Phosphoribulokinase / Uridine kinase family HPY12_01410 PF06794 Uncharacterised protein family (UPF0270) HPY12_01415 PF00561 alpha/beta hydrolase fold HPY12_01425 PF12848 ABC transporter HPY12_01425 PF00005 ABC transporter HPY12_01430 PF02525 Flavodoxin-like fold HPY12_01435 PF00999 Sodium/hydrogen exchanger family HPY12_01435 PF02254 TrkA-N domain HPY12_01445 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY12_01450 PF01797 Transposase IS200 like HPY12_01455 PF01112 Asparaginase HPY12_01460 PF00709 Adenylosuccinate synthetase HPY12_01470 PF11893 Domain of unknown function (DUF3413) HPY12_01470 PF00884 Sulfatase HPY12_01475 PF08206 Ribonuclease B OB domain HPY12_01475 PF00575 S1 RNA binding domain HPY12_01475 PF08461 Ribonuclease R winged-helix domain HPY12_01475 PF17876 Cold shock domain HPY12_01475 PF00773 RNB domain HPY12_01480 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY12_01480 PF00588 SpoU rRNA Methylase family HPY12_01485 PF00338 Ribosomal protein S10p/S20e HPY12_01490 PF00297 Ribosomal protein L3 HPY12_01495 PF00573 Ribosomal protein L4/L1 family HPY12_01500 PF00276 Ribosomal protein L23 HPY12_01505 PF00181 Ribosomal Proteins L2, RNA binding domain HPY12_01505 PF03947 Ribosomal Proteins L2, C-terminal domain HPY12_01510 PF00203 Ribosomal protein S19 HPY12_01515 PF00237 Ribosomal protein L22p/L17e HPY12_01520 PF00189 Ribosomal protein S3, C-terminal domain HPY12_01520 PF07650 KH domain HPY12_01525 PF00252 Ribosomal protein L16p/L10e HPY12_01530 PF00831 Ribosomal L29 protein HPY12_01535 PF00366 Ribosomal protein S17 HPY12_01540 PF00238 Ribosomal protein L14p/L23e HPY12_01545 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HPY12_01545 PF00467 KOW motif HPY12_01550 PF00673 ribosomal L5P family C-terminus HPY12_01550 PF00281 Ribosomal protein L5 HPY12_01555 PF00253 Ribosomal protein S14p/S29e HPY12_01560 PF00410 Ribosomal protein S8 HPY12_01565 PF00347 Ribosomal protein L6 HPY12_01570 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HPY12_01575 PF00333 Ribosomal protein S5, N-terminal domain HPY12_01575 PF03719 Ribosomal protein S5, C-terminal domain HPY12_01580 PF00327 Ribosomal protein L30p/L7e HPY12_01585 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HPY12_01590 PF00344 SecY translocase HPY12_01595 PF00444 Ribosomal protein L36 HPY12_01600 PF00416 Ribosomal protein S13/S18 HPY12_01605 PF00411 Ribosomal protein S11 HPY12_01610 PF01479 S4 domain HPY12_01610 PF00163 Ribosomal protein S4/S9 N-terminal domain HPY12_01615 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HPY12_01615 PF01000 RNA polymerase Rpb3/RpoA insert domain HPY12_01615 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HPY12_01620 PF01196 Ribosomal protein L17 HPY12_01630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY12_01630 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY12_01635 PF08525 Opacity-associated protein A N-terminal motif HPY12_01635 PF04225 Opacity-associated protein A LysM-like domain HPY12_01640 PF00892 EamA-like transporter family HPY12_01645 PF13673 Acetyltransferase (GNAT) domain HPY12_01650 PF00270 DEAD/DEAH box helicase HPY12_01650 PF03880 DbpA RNA binding domain HPY12_01650 PF00271 Helicase conserved C-terminal domain HPY12_01660 PF02872 5'-nucleotidase, C-terminal domain HPY12_01660 PF00149 Calcineurin-like phosphoesterase HPY12_01665 PF10414 Sirohaem synthase dimerisation region HPY12_01665 PF14824 Sirohaem biosynthesis protein central HPY12_01665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY12_01670 PF01507 Phosphoadenosine phosphosulfate reductase family HPY12_01675 PF00009 Elongation factor Tu GTP binding domain HPY12_01700 PF00005 ABC transporter HPY12_01710 PF10795 Protein of unknown function (DUF2607) HPY12_01715 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HPY12_01720 PF01625 Peptide methionine sulfoxide reductase HPY12_01725 PF17243 POTRA domain TamA domain 1 HPY12_01725 PF01103 Surface antigen HPY12_01725 PF07244 Surface antigen variable number repeat HPY12_01730 PF04357 TamB, inner membrane protein subunit of TAM complex HPY12_01735 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like HPY12_01740 PF00719 Inorganic pyrophosphatase HPY12_01745 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HPY12_01750 PF01225 Mur ligase family, catalytic domain HPY12_01750 PF02875 Mur ligase family, glutamate ligase domain HPY12_01750 PF08245 Mur ligase middle domain HPY12_01755 PF02441 Flavoprotein HPY12_01765 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_01770 PF00005 ABC transporter HPY12_01775 PF04751 Protein of unknown function (DUF615) HPY12_01780 PF01523 Putative modulator of DNA gyrase HPY12_01785 PF00571 CBS domain HPY12_01785 PF01769 Divalent cation transporter HPY12_01785 PF03448 MgtE intracellular N domain HPY12_01790 PF00381 PTS HPr component phosphorylation site HPY12_01795 PF03668 P-loop ATPase protein family HPY12_01800 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY12_01805 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY12_01810 PF04963 Sigma-54 factor, core binding domain HPY12_01810 PF00309 Sigma-54 factor, Activator interacting domain (AID) HPY12_01810 PF04552 Sigma-54, DNA binding domain HPY12_01815 PF00005 ABC transporter HPY12_01815 PF12399 Branched-chain amino acid ATP-binding cassette transporter HPY12_01820 PF03968 OstA-like protein HPY12_01835 PF00571 CBS domain HPY12_01835 PF01380 SIS domain HPY12_01840 PF01699 Sodium/calcium exchanger protein HPY12_01845 PF00005 ABC transporter HPY12_01850 PF02405 Permease MlaE HPY12_01855 PF02470 MlaD protein HPY12_01860 PF05494 MlaC protein HPY12_01870 PF01722 BolA-like protein HPY12_01875 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY12_01880 PF01553 Acyltransferase HPY12_01885 PF01042 Endoribonuclease L-PSP HPY12_01890 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HPY12_01890 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HPY12_01895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY12_01895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY12_01900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY12_01900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY12_01905 PF13638 PIN domain HPY12_01905 PF02562 PhoH-like protein HPY12_01910 PF18339 RapA N-terminal Tudor like domain 1 HPY12_01910 PF00176 SNF2 family N-terminal domain HPY12_01910 PF12137 RNA polymerase recycling family C-terminal HPY12_01910 PF00271 Helicase conserved C-terminal domain HPY12_01910 PF18337 RapA N-terminal Tudor like domain HPY12_01915 PF00849 RNA pseudouridylate synthase HPY12_01920 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY12_01920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY12_01925 PF08264 Anticodon-binding domain of tRNA HPY12_01925 PF10458 Valyl tRNA synthetase tRNA binding arm HPY12_01925 PF00133 tRNA synthetases class I (I, L, M and V) HPY12_01930 PF04364 DNA polymerase III chi subunit, HolC HPY12_01935 PF02789 Cytosol aminopeptidase family, N-terminal domain HPY12_01935 PF00883 Cytosol aminopeptidase family, catalytic domain HPY12_01940 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY12_01945 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY12_01960 PF00072 Response regulator receiver domain HPY12_02005 PF00694 Aconitase C-terminal domain HPY12_02010 PF00330 Aconitase family (aconitate hydratase) HPY12_02015 PF00180 Isocitrate/isopropylmalate dehydrogenase HPY12_02020 PF08502 LeuA allosteric (dimerisation) domain HPY12_02020 PF00682 HMGL-like HPY12_02030 PF01569 PAP2 superfamily HPY12_02050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY12_02050 PF00205 Thiamine pyrophosphate enzyme, central domain HPY12_02050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY12_02055 PF10369 Small subunit of acetolactate synthase HPY12_02060 PF01842 ACT domain HPY12_02060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY12_02060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY12_02065 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HPY12_02070 PF01812 5-formyltetrahydrofolate cyclo-ligase family HPY12_02080 PF05164 Cell division protein ZapA HPY12_02085 PF03695 Uncharacterised protein family (UPF0149) HPY12_02090 PF01494 FAD binding domain HPY12_02095 PF01494 FAD binding domain HPY12_02110 PF03937 Flavinator of succinate dehydrogenase HPY12_02120 PF00890 FAD binding domain HPY12_02120 PF02910 Fumarate reductase flavoprotein C-term HPY12_02125 PF04542 Sigma-70 region 2 HPY12_02125 PF08281 Sigma-70, region 4 HPY12_02130 PF03872 Anti sigma-E protein RseA, N-terminal domain HPY12_02130 PF03873 Anti sigma-E protein RseA, C-terminal domain HPY12_02135 PF03888 MucB/RseB N-terminal domain HPY12_02135 PF17188 MucB/RseB C-terminal domain HPY12_02145 PF06421 GTP-binding protein LepA C-terminus HPY12_02145 PF00009 Elongation factor Tu GTP binding domain HPY12_02145 PF00679 Elongation factor G C-terminus HPY12_02145 PF03144 Elongation factor Tu domain 2 HPY12_02150 PF10502 Signal peptidase, peptidase S26 HPY12_02155 PF00035 Double-stranded RNA binding motif HPY12_02155 PF14622 Ribonuclease-III-like HPY12_02160 PF07650 KH domain HPY12_02160 PF01926 50S ribosome-binding GTPase HPY12_02165 PF02565 Recombination protein O C terminal HPY12_02165 PF11967 Recombination protein O N terminal HPY12_02170 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HPY12_02175 PF01648 4'-phosphopantetheinyl transferase superfamily HPY12_02190 PF00990 Diguanylate cyclase, GGDEF domain HPY12_02195 PF00672 HAMP domain HPY12_02195 PF01627 Hpt domain HPY12_02195 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY12_02195 PF00072 Response regulator receiver domain HPY12_02195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_02195 PF00512 His Kinase A (phospho-acceptor) domain HPY12_02200 PF01938 TRAM domain HPY12_02200 PF05958 tRNA (Uracil-5-)-methyltransferase HPY12_02205 PF02824 TGS domain HPY12_02205 PF13291 ACT domain HPY12_02205 PF04607 Region found in RelA / SpoT proteins HPY12_02210 PF03819 MazG nucleotide pyrophosphohydrolase domain HPY12_02215 PF00117 Glutamine amidotransferase class-I HPY12_02215 PF06418 CTP synthase N-terminus HPY12_02220 PF00113 Enolase, C-terminal TIM barrel domain HPY12_02220 PF03952 Enolase, N-terminal domain HPY12_02225 PF01743 Poly A polymerase head domain HPY12_02225 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY12_02225 PF01966 HD domain HPY12_02230 PF13401 AAA domain HPY12_02230 PF01471 Putative peptidoglycan binding domain HPY12_02240 PF08239 Bacterial SH3 domain HPY12_02245 PF01384 Phosphate transporter family HPY12_02250 PF01865 Protein of unknown function DUF47 HPY12_02255 PF01928 CYTH domain HPY12_02265 PF00672 HAMP domain HPY12_02265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_02265 PF02743 Cache domain HPY12_02270 PF08335 GlnD PII-uridylyltransferase HPY12_02270 PF03710 Glutamate-ammonia ligase adenylyltransferase HPY12_02275 PF01467 Cytidylyltransferase-like HPY12_02275 PF00294 pfkB family carbohydrate kinase HPY12_02280 PF02321 Outer membrane efflux protein HPY12_02285 PF00293 NUDIX domain HPY12_02290 PF06853 Protein of unknown function (DUF1249) HPY12_02295 PF00149 Calcineurin-like phosphoesterase HPY12_02300 PF05728 Uncharacterised protein family (UPF0227) HPY12_02305 PF00986 DNA gyrase B subunit, carboxyl terminus HPY12_02305 PF01751 Toprim domain HPY12_02305 PF00204 DNA gyrase B HPY12_02305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_02310 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY12_02310 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY12_02315 PF03884 DNA gyrase inhibitor YacG HPY12_02320 PF07072 Cell division protein HPY12_02325 PF01121 Dephospho-CoA kinase HPY12_02330 PF01478 Type IV leader peptidase family HPY12_02330 PF06750 Bacterial Peptidase A24 N-terminal domain HPY12_02335 PF00482 Type II secretion system (T2SS), protein F HPY12_02340 PF00437 Type II/IV secretion system protein HPY12_02340 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HPY12_02350 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HPY12_02350 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HPY12_02355 PF01510 N-acetylmuramoyl-L-alanine amidase HPY12_02360 PF00258 Flavodoxin HPY12_02365 PF02899 Phage integrase, N-terminal SAM-like domain HPY12_02365 PF00589 Phage integrase family HPY12_02370 PF13098 Thioredoxin-like domain HPY12_02370 PF10411 Disulfide bond isomerase protein N-terminus HPY12_02375 PF17768 RecJ OB domain HPY12_02375 PF01368 DHH family HPY12_02375 PF02272 DHHA1 domain HPY12_02380 PF00149 Calcineurin-like phosphoesterase HPY12_02380 PF02872 5'-nucleotidase, C-terminal domain HPY12_02385 PF07729 FCD domain HPY12_02385 PF00392 Bacterial regulatory proteins, gntR family HPY12_02390 PF00456 Transketolase, thiamine diphosphate binding domain HPY12_02390 PF17831 Pyruvate dehydrogenase E1 component middle domain HPY12_02395 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY12_02395 PF00364 Biotin-requiring enzyme HPY12_02395 PF02817 e3 binding domain HPY12_02400 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY12_02400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY12_02410 PF01795 MraW methylase family HPY12_02415 PF04999 Cell division protein FtsL HPY12_02420 PF03717 Penicillin-binding Protein dimerisation domain HPY12_02420 PF00905 Penicillin binding protein transpeptidase domain HPY12_02425 PF01225 Mur ligase family, catalytic domain HPY12_02425 PF08245 Mur ligase middle domain HPY12_02425 PF02875 Mur ligase family, glutamate ligase domain HPY12_02430 PF08245 Mur ligase middle domain HPY12_02430 PF02875 Mur ligase family, glutamate ligase domain HPY12_02430 PF01225 Mur ligase family, catalytic domain HPY12_02435 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HPY12_02435 PF00953 Glycosyl transferase family 4 HPY12_02440 PF08245 Mur ligase middle domain HPY12_02440 PF02875 Mur ligase family, glutamate ligase domain HPY12_02445 PF01098 Cell cycle protein HPY12_02450 PF03033 Glycosyltransferase family 28 N-terminal domain HPY12_02450 PF04101 Glycosyltransferase family 28 C-terminal domain HPY12_02455 PF08245 Mur ligase middle domain HPY12_02455 PF01225 Mur ligase family, catalytic domain HPY12_02455 PF02875 Mur ligase family, glutamate ligase domain HPY12_02460 PF03799 Cell division protein FtsQ HPY12_02460 PF08478 POTRA domain, FtsQ-type HPY12_02465 PF02491 SHS2 domain inserted in FTSA HPY12_02470 PF12327 FtsZ family, C-terminal domain HPY12_02470 PF00091 Tubulin/FtsZ family, GTPase domain HPY12_02475 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HPY12_02485 PF07516 SecA Wing and Scaffold domain HPY12_02485 PF01043 SecA preprotein cross-linking domain HPY12_02485 PF07517 SecA DEAD-like domain HPY12_02485 PF02810 SEC-C motif HPY12_02490 PF00293 NUDIX domain HPY12_02495 PF01113 Dihydrodipicolinate reductase, N-terminus HPY12_02495 PF05173 Dihydrodipicolinate reductase, C-terminus HPY12_02505 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HPY12_02505 PF00117 Glutamine amidotransferase class-I HPY12_02510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HPY12_02510 PF02142 MGS-like domain HPY12_02510 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HPY12_02525 PF01925 Sulfite exporter TauE/SafE HPY12_02530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_02530 PF03466 LysR substrate binding domain HPY12_02535 PF03458 UPF0126 domain HPY12_02540 PF01497 Periplasmic binding protein HPY12_02550 PF01048 Phosphorylase superfamily HPY12_02560 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY12_02560 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY12_02565 PF00310 Glutamine amidotransferases class-II HPY12_02565 PF01493 GXGXG motif HPY12_02565 PF01645 Conserved region in glutamate synthase HPY12_02565 PF04898 Glutamate synthase central domain HPY12_02570 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY12_02570 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY12_02575 PF04898 Glutamate synthase central domain HPY12_02575 PF00310 Glutamine amidotransferases class-II HPY12_02575 PF01493 GXGXG motif HPY12_02575 PF01645 Conserved region in glutamate synthase HPY12_02580 PF16199 Radical_SAM C-terminal domain HPY12_02580 PF04055 Radical SAM superfamily HPY12_02590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_02590 PF00072 Response regulator receiver domain HPY12_02590 PF00989 PAS fold HPY12_02590 PF01627 Hpt domain HPY12_02590 PF18415 Histidine kinase receptor ArcB trans-membrane domain HPY12_02590 PF00512 His Kinase A (phospho-acceptor) domain HPY12_02595 PF00072 Response regulator receiver domain HPY12_02595 PF00486 Transcriptional regulatory protein, C terminal HPY12_02610 PF03737 Aldolase/RraA HPY12_02625 PF00696 Amino acid kinase family HPY12_02625 PF01842 ACT domain HPY12_02625 PF03447 Homoserine dehydrogenase, NAD binding domain HPY12_02625 PF13840 ACT domain HPY12_02625 PF00742 Homoserine dehydrogenase HPY12_02630 PF00288 GHMP kinases N terminal domain HPY12_02630 PF08544 GHMP kinases C terminal HPY12_02635 PF00291 Pyridoxal-phosphate dependent enzyme HPY12_02635 PF14821 Threonine synthase N terminus HPY12_02640 PF01228 Glycine radical HPY12_02645 PF01261 Xylose isomerase-like TIM barrel HPY12_02650 PF03167 Uracil DNA glycosylase superfamily HPY12_02665 PF01235 Sodium:alanine symporter family HPY12_02680 PF01026 TatD related DNase HPY12_02685 PF01773 Na+ dependent nucleoside transporter N-terminus HPY12_02685 PF07662 Na+ dependent nucleoside transporter C-terminus HPY12_02685 PF07670 Nucleoside recognition HPY12_02695 PF01791 DeoC/LacD family aldolase HPY12_02700 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HPY12_02700 PF00591 Glycosyl transferase family, a/b domain HPY12_02700 PF02885 Glycosyl transferase family, helical bundle domain HPY12_02705 PF01676 Metalloenzyme superfamily HPY12_02710 PF01048 Phosphorylase superfamily HPY12_02720 PF18429 Domain of unknown function (DUF5609) HPY12_02730 PF18073 Rubredoxin metal binding domain HPY12_02735 PF03764 Elongation factor G, domain IV HPY12_02735 PF14492 Elongation Factor G, domain II HPY12_02735 PF03144 Elongation factor Tu domain 2 HPY12_02735 PF00009 Elongation factor Tu GTP binding domain HPY12_02735 PF00679 Elongation factor G C-terminus HPY12_02740 PF00501 AMP-binding enzyme HPY12_02745 PF00072 Response regulator receiver domain HPY12_02755 PF02837 Glycosyl hydrolases family 2, sugar binding domain HPY12_02755 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HPY12_02755 PF02929 Beta galactosidase small chain HPY12_02755 PF16353 Domain of unknown function(DUF4981) HPY12_02755 PF00703 Glycosyl hydrolases family 2 HPY12_02760 PF00356 Bacterial regulatory proteins, lacI family HPY12_02765 PF01588 Putative tRNA binding domain HPY12_02775 PF01544 CorA-like Mg2+ transporter protein HPY12_02780 PF18030 RimK PreATP-grasp domain HPY12_02780 PF02080 TrkA-C domain HPY12_02780 PF08443 RimK-like ATP-grasp domain HPY12_02785 PF00583 Acetyltransferase (GNAT) family HPY12_02795 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HPY12_02795 PF14602 Hexapeptide repeat of succinyl-transferase HPY12_02800 PF07130 YebG protein HPY12_02815 PF17946 RecC C-terminal domain HPY12_02820 PF12705 PD-(D/E)XK nuclease superfamily HPY12_02820 PF13361 UvrD-like helicase C-terminal domain HPY12_02820 PF00580 UvrD/REP helicase N-terminal domain HPY12_02825 PF13538 UvrD-like helicase C-terminal domain HPY12_02835 PF00583 Acetyltransferase (GNAT) family HPY12_02835 PF00696 Amino acid kinase family HPY12_02845 PF06725 3D domain HPY12_02845 PF03562 MltA specific insert domain HPY12_02850 PF00899 ThiF family HPY12_02855 PF02657 Fe-S metabolism associated domain HPY12_02860 PF00266 Aminotransferase class-V HPY12_02865 PF01965 DJ-1/PfpI family HPY12_02870 PF02558 Ketopantoate reductase PanE/ApbA HPY12_02870 PF08546 Ketopantoate reductase PanE/ApbA C terminal HPY12_02875 PF03502 Nucleoside-specific channel-forming protein, Tsx HPY12_02885 PF04542 Sigma-70 region 2 HPY12_02885 PF04545 Sigma-70, region 4 HPY12_02900 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY12_02910 PF05175 Methyltransferase small domain HPY12_02915 PF01722 BolA-like protein HPY12_02920 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HPY12_02920 PF11973 NQRA C-terminal domain HPY12_02925 PF03116 NQR2, RnfD, RnfE family HPY12_02930 PF04205 FMN-binding domain HPY12_02935 PF02508 Rnf-Nqr subunit, membrane protein HPY12_02940 PF02508 Rnf-Nqr subunit, membrane protein HPY12_02945 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY12_02945 PF00175 Oxidoreductase NAD-binding domain HPY12_02945 PF00970 Oxidoreductase FAD-binding domain HPY12_02950 PF02424 ApbE family HPY12_02960 PF11798 IMS family HHH motif HPY12_02960 PF00817 impB/mucB/samB family HPY12_02970 PF17158 Membrane-associated sensor, integral membrane domain HPY12_02970 PF00990 Diguanylate cyclase, GGDEF domain HPY12_02975 PF00209 Sodium:neurotransmitter symporter family HPY12_02985 PF18030 RimK PreATP-grasp domain HPY12_02985 PF08443 RimK-like ATP-grasp domain HPY12_02990 PF18030 RimK PreATP-grasp domain HPY12_02990 PF08443 RimK-like ATP-grasp domain HPY12_02995 PF07687 Peptidase dimerisation domain HPY12_02995 PF01546 Peptidase family M20/M25/M40 HPY12_03000 PF00860 Permease family HPY12_03005 PF00156 Phosphoribosyl transferase domain HPY12_03015 PF07417 Sigma factor-binding transcriptional regulator Crl HPY12_03020 PF00696 Amino acid kinase family HPY12_03020 PF01472 PUA domain HPY12_03025 PF00171 Aldehyde dehydrogenase family HPY12_03030 PF03477 ATP cone domain HPY12_03035 PF01872 RibD C-terminal domain HPY12_03035 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY12_03040 PF00677 Lumazine binding domain HPY12_03045 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY12_03045 PF00925 GTP cyclohydrolase II HPY12_03050 PF00885 6,7-dimethyl-8-ribityllumazine synthase HPY12_03055 PF01029 NusB family HPY12_03060 PF02769 AIR synthase related protein, C-terminal domain HPY12_03060 PF00586 AIR synthase related protein, N-terminal domain HPY12_03065 PF04608 Phosphatidylglycerophosphatase A HPY12_03070 PF11944 Protein of unknown function (DUF3461) HPY12_03075 PF01909 Nucleotidyltransferase domain HPY12_03075 PF08335 GlnD PII-uridylyltransferase HPY12_03075 PF01966 HD domain HPY12_03080 PF00557 Metallopeptidase family M24 HPY12_03085 PF00318 Ribosomal protein S2 HPY12_03090 PF00889 Elongation factor TS HPY12_03095 PF00696 Amino acid kinase family HPY12_03100 PF01765 Ribosome recycling factor HPY12_03105 PF01255 Putative undecaprenyl diphosphate synthase HPY12_03115 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HPY12_03115 PF13288 DXP reductoisomerase C-terminal domain HPY12_03115 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HPY12_03120 PF02163 Peptidase family M50 HPY12_03120 PF17820 PDZ domain HPY12_03125 PF01103 Surface antigen HPY12_03125 PF07244 Surface antigen variable number repeat HPY12_03130 PF03938 Outer membrane protein (OmpH-like) HPY12_03135 PF00132 Bacterial transferase hexapeptide (six repeats) HPY12_03135 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HPY12_03140 PF07977 FabA-like domain HPY12_03145 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HPY12_03145 PF00132 Bacterial transferase hexapeptide (six repeats) HPY12_03150 PF02684 Lipid-A-disaccharide synthetase HPY12_03155 PF01351 Ribonuclease HII HPY12_03160 PF01336 OB-fold nucleic acid binding domain HPY12_03160 PF02811 PHP domain HPY12_03160 PF14579 Helix-hairpin-helix motif HPY12_03160 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HPY12_03160 PF07733 Bacterial DNA polymerase III alpha NTPase domain HPY12_03165 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HPY12_03170 PF09179 TilS substrate binding domain HPY12_03170 PF11734 TilS substrate C-terminal domain HPY12_03170 PF01171 PP-loop family HPY12_03175 PF00034 Cytochrome c HPY12_03180 PF05870 Phenolic acid decarboxylase (PAD) HPY12_03185 PF00543 Nitrogen regulatory protein P-II HPY12_03190 PF03372 Endonuclease/Exonuclease/phosphatase family HPY12_03195 PF01464 Transglycosylase SLT domain HPY12_03195 PF01476 LysM domain HPY12_03200 PF00753 Metallo-beta-lactamase superfamily HPY12_03200 PF16123 Hydroxyacylglutathione hydrolase C-terminus HPY12_03205 PF08241 Methyltransferase domain HPY12_03210 PF00075 RNase H HPY12_03215 PF00929 Exonuclease HPY12_03225 PF09317 Domain of unknown function (DUF1974) HPY12_03225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY12_03225 PF02770 Acyl-CoA dehydrogenase, middle domain HPY12_03225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY12_03230 PF13580 SIS domain HPY12_03235 PF13230 Glutamine amidotransferases class-II HPY12_03240 PF00551 Formyl transferase HPY12_03245 PF00586 AIR synthase related protein, N-terminal domain HPY12_03245 PF02769 AIR synthase related protein, C-terminal domain HPY12_03255 PF08448 PAS fold HPY12_03255 PF00990 Diguanylate cyclase, GGDEF domain HPY12_03260 PF01479 S4 domain HPY12_03260 PF00849 RNA pseudouridylate synthase HPY12_03265 PF01713 Smr domain HPY12_03285 PF02838 Glycosyl hydrolase family 20, domain 2 HPY12_03285 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY12_03285 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HPY12_03285 PF03173 Putative carbohydrate binding domain HPY12_03295 PF00403 Heavy-metal-associated domain HPY12_03300 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY12_03305 PF00691 OmpA family HPY12_03305 PF01389 OmpA-like transmembrane domain HPY12_03315 PF07715 TonB-dependent Receptor Plug Domain HPY12_03320 PF04954 Siderophore-interacting protein HPY12_03320 PF08021 Siderophore-interacting FAD-binding domain HPY12_03325 PF00550 Phosphopantetheine attachment site HPY12_03325 PF00501 AMP-binding enzyme HPY12_03325 PF08242 Methyltransferase domain HPY12_03325 PF00668 Condensation domain HPY12_03360 PF01584 CheW-like domain HPY12_03360 PF00072 Response regulator receiver domain HPY12_03365 PF01739 CheR methyltransferase, SAM binding domain HPY12_03365 PF03705 CheR methyltransferase, all-alpha domain HPY12_03370 PF00460 Flagella basal body rod protein HPY12_03375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY12_03375 PF00460 Flagella basal body rod protein HPY12_03380 PF03963 Flagellar hook capping protein - N-terminal region HPY12_03380 PF13860 FlgD Ig-like domain HPY12_03380 PF13861 FlgD Tudor-like domain HPY12_03385 PF07559 Flagellar basal body protein FlaE HPY12_03385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY12_03385 PF00460 Flagella basal body rod protein HPY12_03390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY12_03390 PF00460 Flagella basal body rod protein HPY12_03395 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY12_03395 PF00460 Flagella basal body rod protein HPY12_03400 PF02107 Flagellar L-ring protein HPY12_03405 PF02119 Flagellar P-ring protein HPY12_03410 PF10135 Rod binding protein HPY12_03410 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HPY12_03415 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY12_03415 PF07196 Flagellin hook IN motif HPY12_03425 PF07196 Flagellin hook IN motif HPY12_03425 PF00669 Bacterial flagellin N-terminal helical region HPY12_03425 PF00700 Bacterial flagellin C-terminal helical region HPY12_03430 PF00669 Bacterial flagellin N-terminal helical region HPY12_03430 PF07196 Flagellin hook IN motif HPY12_03430 PF00700 Bacterial flagellin C-terminal helical region HPY12_03515 PF06071 Protein of unknown function (DUF933) HPY12_03515 PF01926 50S ribosome-binding GTPase HPY12_03520 PF01195 Peptidyl-tRNA hydrolase HPY12_03525 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HPY12_03525 PF14572 Phosphoribosyl synthetase-associated domain HPY12_03530 PF08544 GHMP kinases C terminal HPY12_03530 PF00288 GHMP kinases N terminal domain HPY12_03535 PF03550 Outer membrane lipoprotein LolB HPY12_03540 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HPY12_03540 PF01488 Shikimate / quinate 5-dehydrogenase HPY12_03540 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HPY12_03545 PF03462 PCRF domain HPY12_03545 PF00472 RF-1 domain HPY12_03550 PF17827 PrmC N-terminal domain HPY12_03550 PF13847 Methyltransferase domain HPY12_03555 PF04247 Invasion gene expression up-regulator, SirB HPY12_03560 PF13369 Transglutaminase-like superfamily HPY12_03565 PF00793 DAHP synthetase I family HPY12_03570 PF00149 Calcineurin-like phosphoesterase HPY12_03570 PF02872 5'-nucleotidase, C-terminal domain HPY12_03575 PF04073 Aminoacyl-tRNA editing domain HPY12_03580 PF00860 Permease family HPY12_03595 PF03358 NADPH-dependent FMN reductase HPY12_03600 PF03960 ArsC family HPY12_03605 PF01435 Peptidase family M48 HPY12_03605 PF13181 Tetratricopeptide repeat HPY12_03615 PF01594 AI-2E family transporter HPY12_03620 PF02743 Cache domain HPY12_03620 PF00672 HAMP domain HPY12_03620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_03625 PF00578 AhpC/TSA family HPY12_03635 PF00701 Dihydrodipicolinate synthetase family HPY12_03640 PF06804 NlpB/DapX lipoprotein HPY12_03650 PF02557 D-alanyl-D-alanine carboxypeptidase HPY12_03655 PF01546 Peptidase family M20/M25/M40 HPY12_03655 PF07687 Peptidase dimerisation domain HPY12_03660 PF03960 ArsC family HPY12_03675 PF11143 Protein of unknown function (DUF2919) HPY12_03680 PF04261 Dyp-type peroxidase family HPY12_03685 PF00669 Bacterial flagellin N-terminal helical region HPY12_03685 PF07196 Flagellin hook IN motif HPY12_03685 PF00700 Bacterial flagellin C-terminal helical region HPY12_03690 PF00700 Bacterial flagellin C-terminal helical region HPY12_03690 PF07196 Flagellin hook IN motif HPY12_03690 PF00669 Bacterial flagellin N-terminal helical region HPY12_03695 PF07196 Flagellin hook IN motif HPY12_03695 PF00700 Bacterial flagellin C-terminal helical region HPY12_03695 PF00669 Bacterial flagellin N-terminal helical region HPY12_03700 PF03646 FlaG protein HPY12_03705 PF02465 Flagellar hook-associated protein 2 N-terminus HPY12_03705 PF07195 Flagellar hook-associated protein 2 C-terminus HPY12_03705 PF07196 Flagellin hook IN motif HPY12_03715 PF02561 Flagellar protein FliS HPY12_03720 PF06490 Flagellar regulatory protein FleQ HPY12_03720 PF02954 Bacterial regulatory protein, Fis family HPY12_03720 PF00158 Sigma-54 interaction domain HPY12_03725 PF08447 PAS fold HPY12_03725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_03725 PF00512 His Kinase A (phospho-acceptor) domain HPY12_03725 PF00989 PAS fold HPY12_03725 PF13426 PAS domain HPY12_03725 PF13493 Domain of unknown function (DUF4118) HPY12_03730 PF02954 Bacterial regulatory protein, Fis family HPY12_03730 PF00158 Sigma-54 interaction domain HPY12_03730 PF00072 Response regulator receiver domain HPY12_03735 PF02049 Flagellar hook-basal body complex protein FliE HPY12_03740 PF01514 Secretory protein of YscJ/FliF family HPY12_03740 PF08345 Flagellar M-ring protein C-terminal HPY12_03745 PF14841 FliG middle domain HPY12_03745 PF14842 FliG N-terminal domain HPY12_03745 PF01706 FliG C-terminal domain HPY12_03750 PF02108 Flagellar assembly protein FliH HPY12_03755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY12_03755 PF18269 T3SS EscN ATPase C-terminal domain HPY12_03775 PF03748 Flagellar basal body-associated protein FliL HPY12_03780 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY12_03780 PF02154 Flagellar motor switch protein FliM HPY12_03785 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY12_03790 PF04347 Flagellar biosynthesis protein, FliO HPY12_03795 PF00813 FliP family HPY12_03800 PF01313 Bacterial export proteins, family 3 HPY12_03805 PF01311 Bacterial export proteins, family 1 HPY12_03810 PF01312 FlhB HrpN YscU SpaS Family HPY12_03815 PF01713 Smr domain HPY12_03820 PF05175 Methyltransferase small domain HPY12_03825 PF01264 Chorismate synthase HPY12_03830 PF03458 UPF0126 domain HPY12_03835 PF04315 Elongation factor P hydroxylase HPY12_03840 PF08891 YfcL protein HPY12_03845 PF03358 NADPH-dependent FMN reductase HPY12_03850 PF01266 FAD dependent oxidoreductase HPY12_03850 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HPY12_03855 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY12_03855 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY12_03865 PF01797 Transposase IS200 like HPY12_03870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY12_03870 PF11890 Domain of unknown function (DUF3410) HPY12_03870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY12_03875 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY12_03875 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY12_03880 PF01475 Ferric uptake regulator family HPY12_03890 PF03466 LysR substrate binding domain HPY12_03890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_03895 PF03788 LrgA family HPY12_03900 PF04172 LrgB-like family HPY12_03905 PF00258 Flavodoxin HPY12_03915 PF12697 Alpha/beta hydrolase family HPY12_03920 PF03925 SeqA protein C-terminal domain HPY12_03920 PF17206 SeqA protein N-terminal domain HPY12_03925 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY12_03925 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY12_03925 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY12_03925 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY12_03935 PF01784 NIF3 (NGG1p interacting factor 3) HPY12_03940 PF00285 Citrate synthase, C-terminal domain HPY12_03945 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY12_03950 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY12_03955 PF02910 Fumarate reductase flavoprotein C-term HPY12_03955 PF00890 FAD binding domain HPY12_03960 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY12_03965 PF16078 2-oxoglutarate dehydrogenase N-terminus HPY12_03965 PF16870 2-oxoglutarate dehydrogenase C-terminal HPY12_03965 PF00676 Dehydrogenase E1 component HPY12_03965 PF02779 Transketolase, pyrimidine binding domain HPY12_03970 PF00364 Biotin-requiring enzyme HPY12_03970 PF02817 e3 binding domain HPY12_03970 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY12_03975 PF00549 CoA-ligase HPY12_03975 PF08442 ATP-grasp domain HPY12_03980 PF02629 CoA binding domain HPY12_03980 PF00549 CoA-ligase HPY12_03985 PF00950 ABC 3 transport family HPY12_03990 PF00005 ABC transporter HPY12_03995 PF01297 Zinc-uptake complex component A periplasmic HPY12_04000 PF12833 Helix-turn-helix domain HPY12_04000 PF02311 AraC-like ligand binding domain HPY12_04005 PF04023 FeoA domain HPY12_04010 PF07670 Nucleoside recognition HPY12_04010 PF07664 Ferrous iron transport protein B C terminus HPY12_04010 PF02421 Ferrous iron transport protein B HPY12_04025 PF00750 tRNA synthetases class I (R) HPY12_04025 PF05746 DALR anticodon binding domain HPY12_04025 PF03485 Arginyl tRNA synthetase N terminal domain HPY12_04035 PF00675 Insulinase (Peptidase family M16) HPY12_04035 PF05193 Peptidase M16 inactive domain HPY12_04040 PF00300 Histidine phosphatase superfamily (branch 1) HPY12_04045 PF00771 FHIPEP family HPY12_04050 PF00448 SRP54-type protein, GTPase domain HPY12_04055 PF10609 NUBPL iron-transfer P-loop NTPase HPY12_04060 PF04545 Sigma-70, region 4 HPY12_04060 PF04539 Sigma-70 region 3 HPY12_04060 PF04542 Sigma-70 region 2 HPY12_04065 PF00072 Response regulator receiver domain HPY12_04070 PF04344 Chemotaxis phosphatase, CheZ HPY12_04075 PF02895 Signal transducing histidine kinase, homodimeric domain HPY12_04075 PF01584 CheW-like domain HPY12_04075 PF01627 Hpt domain HPY12_04075 PF00072 Response regulator receiver domain HPY12_04075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_04080 PF01339 CheB methylesterase HPY12_04080 PF00072 Response regulator receiver domain HPY12_04085 PF13614 AAA domain HPY12_04095 PF01584 CheW-like domain HPY12_04105 PF00005 ABC transporter HPY12_04110 PF03379 CcmB protein HPY12_04115 PF01578 Cytochrome C assembly protein HPY12_04120 PF04995 Heme exporter protein D (CcmD) HPY12_04125 PF03100 CcmE HPY12_04130 PF01578 Cytochrome C assembly protein HPY12_04130 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HPY12_04135 PF08534 Redoxin HPY12_04140 PF03918 Cytochrome C biogenesis protein HPY12_04150 PF04333 MlaA lipoprotein HPY12_04165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY12_04165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY12_04170 PF00462 Glutaredoxin HPY12_04175 PF01751 Toprim domain HPY12_04175 PF01131 DNA topoisomerase HPY12_04180 PF00850 Histone deacetylase domain HPY12_04195 PF11893 Domain of unknown function (DUF3413) HPY12_04195 PF00884 Sulfatase HPY12_04200 PF07208 Protein of unknown function (DUF1414) HPY12_04205 PF04245 37-kD nucleoid-associated bacterial protein HPY12_04215 PF03553 Na+/H+ antiporter family HPY12_04220 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY12_04220 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY12_04225 PF01914 MarC family integral membrane protein HPY12_04230 PF00465 Iron-containing alcohol dehydrogenase HPY12_04230 PF00171 Aldehyde dehydrogenase family HPY12_04240 PF01740 STAS domain HPY12_04240 PF00916 Sulfate permease family HPY12_04245 PF10150 Ribonuclease E/G family HPY12_04245 PF12111 Polyribonucleotide phosphorylase C terminal HPY12_04245 PF00575 S1 RNA binding domain HPY12_04250 PF01479 S4 domain HPY12_04250 PF00849 RNA pseudouridylate synthase HPY12_04255 PF02545 Maf-like protein HPY12_04260 PF02620 Large ribosomal RNA subunit accumulation protein YceD HPY12_04265 PF01783 Ribosomal L32p protein family HPY12_04270 PF02504 Fatty acid synthesis protein HPY12_04275 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY12_04275 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY12_04280 PF00698 Acyl transferase domain HPY12_04290 PF00550 Phosphopantetheine attachment site HPY12_04295 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY12_04295 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY12_04300 PF01063 Amino-transferase class IV HPY12_04305 PF02618 YceG-like family HPY12_04310 PF02223 Thymidylate kinase HPY12_04315 PF09115 DNA polymerase III, delta subunit, C terminal HPY12_04320 PF01026 TatD related DNase HPY12_04325 PF02378 Phosphotransferase system, EIIC HPY12_04325 PF00367 phosphotransferase system, EIIB HPY12_04335 PF00209 Sodium:neurotransmitter symporter family HPY12_04350 PF01734 Patatin-like phospholipase HPY12_04355 PF00224 Pyruvate kinase, barrel domain HPY12_04355 PF02887 Pyruvate kinase, alpha/beta domain HPY12_04360 PF00480 ROK family HPY12_04365 PF00072 Response regulator receiver domain HPY12_04365 PF01584 CheW-like domain HPY12_04380 PF13847 Methyltransferase domain HPY12_04390 PF01263 Aldose 1-epimerase HPY12_04395 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY12_04395 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY12_04400 PF01641 SelR domain HPY12_04410 PF07023 Protein of unknown function (DUF1315) HPY12_04415 PF17763 Glutaminase/Asparaginase C-terminal domain HPY12_04415 PF00710 Asparaginase, N-terminal HPY12_04420 PF01343 Peptidase family S49 HPY12_04425 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY12_04425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY12_04430 PF00551 Formyl transferase HPY12_04430 PF01842 ACT domain HPY12_04440 PF04851 Type III restriction enzyme, res subunit HPY12_04440 PF13307 Helicase C-terminal domain HPY12_04445 PF00814 Glycoprotease family HPY12_04460 PF00561 alpha/beta hydrolase fold HPY12_04465 PF00501 AMP-binding enzyme HPY12_04465 PF13193 AMP-binding enzyme C-terminal domain HPY12_04470 PF01612 3'-5' exonuclease HPY12_04470 PF00570 HRDC domain HPY12_04490 PF01966 HD domain HPY12_04490 PF13286 Phosphohydrolase-associated domain HPY12_04500 PF00155 Aminotransferase class I and II HPY12_04505 PF00425 chorismate binding enzyme HPY12_04510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY12_04510 PF16582 Middle domain of thiamine pyrophosphate HPY12_04510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY12_04515 PF12697 Alpha/beta hydrolase family HPY12_04520 PF00378 Enoyl-CoA hydratase/isomerase HPY12_04525 PF13378 Enolase C-terminal domain-like HPY12_04530 PF13193 AMP-binding enzyme C-terminal domain HPY12_04530 PF00501 AMP-binding enzyme HPY12_04535 PF03594 Benzoate membrane transport protein HPY12_04540 PF07883 Cupin domain HPY12_04540 PF01381 Helix-turn-helix HPY12_04545 PF00672 HAMP domain HPY12_04545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_04545 PF12729 Four helix bundle sensory module for signal transduction HPY12_04555 PF07690 Major Facilitator Superfamily HPY12_04575 PF04170 NlpE N-terminal domain HPY12_04580 PF03776 Septum formation topological specificity factor MinE HPY12_04585 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY12_04590 PF03775 Septum formation inhibitor MinC, C-terminal domain HPY12_04590 PF05209 Septum formation inhibitor MinC, N-terminal domain HPY12_04595 PF05166 YcgL domain HPY12_04600 PF13406 Transglycosylase SLT domain HPY12_04605 PF03466 LysR substrate binding domain HPY12_04605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_04610 PF07670 Nucleoside recognition HPY12_04610 PF01773 Na+ dependent nucleoside transporter N-terminus HPY12_04610 PF07662 Na+ dependent nucleoside transporter C-terminus HPY12_04615 PF00704 Glycosyl hydrolases family 18 HPY12_04620 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY12_04625 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY12_04625 PF01568 Molydopterin dinucleotide binding domain HPY12_04625 PF00384 Molybdopterin oxidoreductase HPY12_04635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_04635 PF03466 LysR substrate binding domain HPY12_04640 PF01494 FAD binding domain HPY12_04645 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HPY12_04650 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HPY12_04650 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HPY12_04695 PF13188 PAS domain HPY12_04695 PF00563 EAL domain HPY12_04695 PF03707 Bacterial signalling protein N terminal repeat HPY12_04695 PF00990 Diguanylate cyclase, GGDEF domain HPY12_04705 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HPY12_04710 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY12_04715 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HPY12_04720 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY12_04725 PF00158 Sigma-54 interaction domain HPY12_04725 PF00072 Response regulator receiver domain HPY12_04725 PF02954 Bacterial regulatory protein, Fis family HPY12_04730 PF00512 His Kinase A (phospho-acceptor) domain HPY12_04730 PF02743 Cache domain HPY12_04730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_04740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY12_04740 PF05697 Bacterial trigger factor protein (TF) HPY12_04740 PF05698 Bacterial trigger factor protein (TF) C-terminus HPY12_04745 PF00574 Clp protease HPY12_04750 PF10431 C-terminal, D2-small domain, of ClpB protein HPY12_04750 PF07724 AAA domain (Cdc48 subfamily) HPY12_04750 PF06689 ClpX C4-type zinc finger HPY12_04755 PF02190 ATP-dependent protease La (LON) substrate-binding domain HPY12_04755 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY12_04755 PF00004 ATPase family associated with various cellular activities (AAA) HPY12_04760 PF00216 Bacterial DNA-binding protein HPY12_04765 PF13145 PPIC-type PPIASE domain HPY12_04775 PF02224 Cytidylate kinase HPY12_04780 PF00575 S1 RNA binding domain HPY12_04785 PF00216 Bacterial DNA-binding protein HPY12_04790 PF06305 Lipopolysaccharide assembly protein A domain HPY12_04795 PF18073 Rubredoxin metal binding domain HPY12_04800 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY12_04805 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HPY12_04815 PF03466 LysR substrate binding domain HPY12_04815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_04825 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY12_04825 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY12_04830 PF01037 Lrp/AsnC ligand binding domain HPY12_04835 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HPY12_04835 PF01580 FtsK/SpoIIIE family HPY12_04835 PF17854 FtsK alpha domain HPY12_04835 PF09397 Ftsk gamma domain HPY12_04840 PF02600 Disulfide bond formation protein DsbB HPY12_04845 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HPY12_04850 PF07840 FadR C-terminal domain HPY12_04850 PF00392 Bacterial regulatory proteins, gntR family HPY12_04860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_04860 PF00672 HAMP domain HPY12_04865 PF01230 HIT domain HPY12_04880 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HPY12_04880 PF13036 Peptidoglycan-synthase activator LpoB HPY12_04890 PF05728 Uncharacterised protein family (UPF0227) HPY12_04895 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY12_04905 PF07968 Leukocidin/Hemolysin toxin family HPY12_04905 PF12563 Hemolytic toxin N terminal HPY12_04905 PF16458 Beta-prism lectin HPY12_04915 PF00271 Helicase conserved C-terminal domain HPY12_04915 PF03461 TRCF domain HPY12_04915 PF00270 DEAD/DEAH box helicase HPY12_04915 PF02559 CarD-like/TRCF domain HPY12_04915 PF17757 UvrB interaction domain HPY12_04930 PF00005 ABC transporter HPY12_04935 PF02687 FtsX-like permease family HPY12_04935 PF12704 MacB-like periplasmic core domain HPY12_04945 PF03772 Competence protein HPY12_04945 PF13567 Domain of unknown function (DUF4131) HPY12_04945 PF00753 Metallo-beta-lactamase superfamily HPY12_04950 PF00005 ABC transporter HPY12_04950 PF00664 ABC transporter transmembrane region HPY12_04955 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HPY12_04960 PF03966 Trm112p-like protein HPY12_04965 PF02348 Cytidylyltransferase HPY12_04970 PF04293 SpoVR like protein HPY12_04975 PF04285 Protein of unknown function (DUF444) HPY12_04980 PF06798 PrkA serine protein kinase C-terminal domain HPY12_04980 PF08298 PrkA AAA domain HPY12_04985 PF03887 YfbU domain HPY12_04995 PF04055 Radical SAM superfamily HPY12_05000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_05000 PF12729 Four helix bundle sensory module for signal transduction HPY12_05000 PF00672 HAMP domain HPY12_05010 PF01228 Glycine radical HPY12_05010 PF02901 Pyruvate formate lyase-like HPY12_05020 PF00005 ABC transporter HPY12_05025 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY12_05030 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_05035 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_05040 PF03372 Endonuclease/Exonuclease/phosphatase family HPY12_05045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_05045 PF00672 HAMP domain HPY12_05050 PF10689 Protein of unknown function (DUF2496) HPY12_05060 PF01925 Sulfite exporter TauE/SafE HPY12_05065 PF06733 DEAD_2 HPY12_05065 PF13307 Helicase C-terminal domain HPY12_05070 PF13609 Gram-negative porin HPY12_05075 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY12_05080 PF02810 SEC-C motif HPY12_05085 PF08668 HDOD domain HPY12_05085 PF00563 EAL domain HPY12_05090 PF00149 Calcineurin-like phosphoesterase HPY12_05095 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY12_05100 PF09190 DALR domain HPY12_05100 PF01406 tRNA synthetases class I (C) catalytic domain HPY12_05105 PF02075 Crossover junction endodeoxyribonuclease RuvC HPY12_05110 PF01330 RuvA N terminal domain HPY12_05110 PF07499 RuvA, C-terminal domain HPY12_05115 PF17864 RuvB AAA lid domain HPY12_05115 PF05491 RuvB C-terminal winged helix domain HPY12_05115 PF05496 Holliday junction DNA helicase RuvB P-loop domain HPY12_05120 PF01654 Cytochrome bd terminal oxidase subunit I HPY12_05125 PF02322 Cytochrome bd terminal oxidase subunit II HPY12_05130 PF08173 Membrane bound YbgT-like protein HPY12_05135 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HPY12_05140 PF03061 Thioesterase superfamily HPY12_05145 PF01618 MotA/TolQ/ExbB proton channel family HPY12_05150 PF02472 Biopolymer transport protein ExbD/TolR HPY12_05160 PF07676 WD40-like Beta Propeller Repeat HPY12_05160 PF04052 TolB amino-terminal domain HPY12_05165 PF00691 OmpA family HPY12_05175 PF02445 Quinolinate synthetase A protein HPY12_05185 PF09308 LuxQ, periplasmic HPY12_05185 PF00512 His Kinase A (phospho-acceptor) domain HPY12_05185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_05185 PF00072 Response regulator receiver domain HPY12_05190 PF06610 L-alanine exporter HPY12_05195 PF01238 Phosphomannose isomerase type I HPY12_05200 PF02378 Phosphotransferase system, EIIC HPY12_05200 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY12_05200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY12_05205 PF12833 Helix-turn-helix domain HPY12_05215 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY12_05235 PF00171 Aldehyde dehydrogenase family HPY12_05240 PF01590 GAF domain HPY12_05240 PF00158 Sigma-54 interaction domain HPY12_05240 PF02954 Bacterial regulatory protein, Fis family HPY12_05245 PF09905 DNA-binding protein VF530 HPY12_05255 PF00875 DNA photolyase HPY12_05255 PF03441 FAD binding domain of DNA photolyase HPY12_05275 PF00717 Peptidase S24-like HPY12_05275 PF01381 Helix-turn-helix HPY12_05330 PF11799 impB/mucB/samB family C-terminal domain HPY12_05330 PF00817 impB/mucB/samB family HPY12_05330 PF13438 Domain of unknown function (DUF4113) HPY12_05335 PF11798 IMS family HHH motif HPY12_05335 PF11799 impB/mucB/samB family C-terminal domain HPY12_05335 PF13438 Domain of unknown function (DUF4113) HPY12_05335 PF00817 impB/mucB/samB family HPY12_05340 PF11799 impB/mucB/samB family C-terminal domain HPY12_05340 PF00817 impB/mucB/samB family HPY12_05340 PF13438 Domain of unknown function (DUF4113) HPY12_05385 PF05973 Phage derived protein Gp49-like (DUF891) HPY12_05440 PF13098 Thioredoxin-like domain HPY12_05440 PF10411 Disulfide bond isomerase protein N-terminus HPY12_05455 PF10502 Signal peptidase, peptidase S26 HPY12_05465 PF06834 TraU protein HPY12_05470 PF06986 Type-1V conjugative transfer system mating pair stabilisation HPY12_05500 PF13322 Domain of unknown function (DUF4092) HPY12_05500 PF13402 Peptidase M60, enhancin and enhancin-like HPY12_05500 PF17291 N-terminal domain of M60-like peptidases HPY12_05530 PF00576 HIUase/Transthyretin family HPY12_05535 PF03928 Haem-degrading HPY12_05545 PF11999 Protein of unknown function (DUF3494) HPY12_05545 PF02368 Bacterial Ig-like domain (group 2) HPY12_05555 PF07963 Prokaryotic N-terminal methylation motif HPY12_05555 PF05946 Toxin-coregulated pilus subunit TcpA HPY12_05590 PF00437 Type II/IV secretion system protein HPY12_05595 PF00482 Type II secretion system (T2SS), protein F HPY12_05600 PF01478 Type IV leader peptidase family HPY12_05600 PF06750 Bacterial Peptidase A24 N-terminal domain HPY12_05615 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family HPY12_05640 PF12561 ToxR activated gene A lipoprotein domain HPY12_05640 PF17945 Beta/Gamma crystallin HPY12_05655 PF12833 Helix-turn-helix domain HPY12_05665 PF00486 Transcriptional regulatory protein, C terminal HPY12_05665 PF18500 CadC C-terminal domain 1 HPY12_05670 PF00873 AcrB/AcrD/AcrF family HPY12_05685 PF01375 Heat-labile enterotoxin alpha chain HPY12_05715 PF00436 Single-strand binding protein family HPY12_05720 PF01797 Transposase IS200 like HPY12_05745 PF08406 CbbQ/NirQ/NorQ C-terminal HPY12_05745 PF07728 AAA domain (dynein-related subfamily) HPY12_05765 PF00092 von Willebrand factor type A domain HPY12_05795 PF06122 Conjugative relaxosome accessory transposon protein HPY12_05810 PF05930 Prophage CP4-57 regulatory protein (AlpA) HPY12_05815 PF13356 Arm DNA-binding domain HPY12_05815 PF00589 Phage integrase family HPY12_05825 PF00873 AcrB/AcrD/AcrF family HPY12_05830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY12_05840 PF02470 MlaD protein HPY12_05845 PF04403 Paraquat-inducible protein A HPY12_05850 PF08362 YcdC-like protein, C-terminal region HPY12_05850 PF00440 Bacterial regulatory proteins, tetR family HPY12_05855 PF00171 Aldehyde dehydrogenase family HPY12_05860 PF07383 Protein of unknown function (DUF1496) HPY12_05870 PF00440 Bacterial regulatory proteins, tetR family HPY12_05870 PF16295 Tetracyclin repressor-like, C-terminal domain HPY12_05875 PF09317 Domain of unknown function (DUF1974) HPY12_05875 PF02770 Acyl-CoA dehydrogenase, middle domain HPY12_05875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY12_05875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY12_05880 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY12_05880 PF07055 Enoyl reductase FAD binding domain HPY12_05880 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY12_05885 PF01176 Translation initiation factor 1A / IF-1 HPY12_05890 PF04377 Arginine-tRNA-protein transferase, C terminus HPY12_05890 PF04376 Arginine-tRNA-protein transferase, N terminus HPY12_05895 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HPY12_05900 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY12_05905 PF10692 Protein of unknown function (DUF2498) HPY12_05910 PF01396 Topoisomerase DNA binding C4 zinc finger HPY12_05910 PF08272 Topoisomerase I zinc-ribbon-like HPY12_05910 PF01131 DNA topoisomerase HPY12_05910 PF01751 Toprim domain HPY12_05915 PF00483 Nucleotidyl transferase HPY12_05920 PF08323 Starch synthase catalytic domain HPY12_05920 PF00534 Glycosyl transferases group 1 HPY12_05940 PF04993 TfoX N-terminal domain HPY12_05940 PF04994 TfoX C-terminal domain HPY12_05945 PF00356 Bacterial regulatory proteins, lacI family HPY12_05950 PF02613 Nitrate reductase delta subunit HPY12_05955 PF00072 Response regulator receiver domain HPY12_05955 PF00486 Transcriptional regulatory protein, C terminal HPY12_05960 PF02698 DUF218 domain HPY12_05965 PF13847 Methyltransferase domain HPY12_05970 PF03882 MukF winged-helix domain HPY12_05970 PF17192 MukF middle domain HPY12_05970 PF17193 MukF C-terminal domain HPY12_05975 PF04288 MukE-like family HPY12_05980 PF16330 MukB hinge domain HPY12_05980 PF04310 MukB N-terminal HPY12_05985 PF00465 Iron-containing alcohol dehydrogenase HPY12_05990 PF06719 AraC-type transcriptional regulator N-terminus HPY12_05990 PF12833 Helix-turn-helix domain HPY12_06000 PF01037 Lrp/AsnC ligand binding domain HPY12_06005 PF01810 LysE type translocator HPY12_06010 PF08497 Radical SAM N-terminal HPY12_06010 PF04055 Radical SAM superfamily HPY12_06010 PF11842 Domain of unknown function (DUF3362) HPY12_06015 PF08448 PAS fold HPY12_06015 PF08447 PAS fold HPY12_06015 PF00563 EAL domain HPY12_06015 PF00990 Diguanylate cyclase, GGDEF domain HPY12_06020 PF05193 Peptidase M16 inactive domain HPY12_06020 PF00675 Insulinase (Peptidase family M16) HPY12_06035 PF03466 LysR substrate binding domain HPY12_06035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_06040 PF08267 Cobalamin-independent synthase, N-terminal domain HPY12_06040 PF01717 Cobalamin-independent synthase, Catalytic domain HPY12_06050 PF03795 YCII-related domain HPY12_06055 PF03061 Thioesterase superfamily HPY12_06060 PF04279 Intracellular septation protein A HPY12_06070 PF02698 DUF218 domain HPY12_06075 PF01370 NAD dependent epimerase/dehydratase family HPY12_06085 PF01226 Formate/nitrite transporter HPY12_06090 PF06796 Periplasmic nitrate reductase protein NapE HPY12_06095 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY12_06100 PF00384 Molybdopterin oxidoreductase HPY12_06100 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY12_06100 PF01568 Molydopterin dinucleotide binding domain HPY12_06120 PF01368 DHH family HPY12_06120 PF02833 DHHA2 domain HPY12_06135 PF00005 ABC transporter HPY12_06140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY12_06140 PF00005 ABC transporter HPY12_06145 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_06145 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY12_06150 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_06155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY12_06160 PF02954 Bacterial regulatory protein, Fis family HPY12_06160 PF00158 Sigma-54 interaction domain HPY12_06165 PF04012 PspA/IM30 family HPY12_06180 PF00529 HlyD membrane-fusion protein of T1SS HPY12_06180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY12_06185 PF13533 Biotin-lipoyl like HPY12_06190 PF00873 AcrB/AcrD/AcrF family HPY12_06195 PF03352 Methyladenine glycosylase HPY12_06200 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY12_06205 PF13396 Phospholipase_D-nuclease N-terminal HPY12_06205 PF13091 PLD-like domain HPY12_06210 PF00209 Sodium:neurotransmitter symporter family HPY12_06215 PF00849 RNA pseudouridylate synthase HPY12_06220 PF01066 CDP-alcohol phosphatidyltransferase HPY12_06225 PF00005 ABC transporter HPY12_06230 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_06235 PF13416 Bacterial extracellular solute-binding protein HPY12_06245 PF06945 Protein of unknown function (DUF1289) HPY12_06260 PF00005 ABC transporter HPY12_06265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY12_06270 PF03222 Tryptophan/tyrosine permease family HPY12_06280 PF01769 Divalent cation transporter HPY12_06280 PF00571 CBS domain HPY12_06280 PF03448 MgtE intracellular N domain HPY12_06285 PF09308 LuxQ, periplasmic HPY12_06285 PF00512 His Kinase A (phospho-acceptor) domain HPY12_06285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_06285 PF00072 Response regulator receiver domain HPY12_06290 PF00563 EAL domain HPY12_06290 PF00990 Diguanylate cyclase, GGDEF domain HPY12_06290 PF03707 Bacterial signalling protein N terminal repeat HPY12_06300 PF01752 Collagenase HPY12_06300 PF04151 Bacterial pre-peptidase C-terminal domain HPY12_06300 PF08453 Peptidase family M9 N-terminal HPY12_06310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY12_06310 PF12793 Sugar transport-related sRNA regulator N-term HPY12_06330 PF00672 HAMP domain HPY12_06330 PF12729 Four helix bundle sensory module for signal transduction HPY12_06330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_06340 PF00360 Phytochrome region HPY12_06340 PF00990 Diguanylate cyclase, GGDEF domain HPY12_06340 PF01590 GAF domain HPY12_06340 PF00563 EAL domain HPY12_06345 PF01386 Ribosomal L25p family HPY12_06350 PF00512 His Kinase A (phospho-acceptor) domain HPY12_06350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_06350 PF00989 PAS fold HPY12_06350 PF11808 Phosphate regulon sensor protein PhoR HPY12_06355 PF00486 Transcriptional regulatory protein, C terminal HPY12_06355 PF00072 Response regulator receiver domain HPY12_06365 PF00271 Helicase conserved C-terminal domain HPY12_06365 PF04851 Type III restriction enzyme, res subunit HPY12_06370 PF01479 S4 domain HPY12_06370 PF00849 RNA pseudouridylate synthase HPY12_06375 PF07690 Major Facilitator Superfamily HPY12_06385 PF11066 Protein of unknown function (DUF2867) HPY12_06385 PF13460 NAD(P)H-binding HPY12_06390 PF01554 MatE HPY12_06395 PF00005 ABC transporter HPY12_06410 PF06965 Na+/H+ antiporter 1 HPY12_06415 PF00202 Aminotransferase class-III HPY12_06420 PF16653 Saccharopine dehydrogenase C-terminal domain HPY12_06420 PF03435 Saccharopine dehydrogenase NADP binding domain HPY12_06430 PF05736 OprF membrane domain HPY12_06430 PF00691 OmpA family HPY12_06435 PF02321 Outer membrane efflux protein HPY12_06475 PF03466 LysR substrate binding domain HPY12_06475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_06485 PF01863 Protein of unknown function DUF45 HPY12_06490 PF05971 RNA methyltransferase HPY12_06505 PF04204 Homoserine O-succinyltransferase HPY12_06525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY12_06540 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HPY12_06540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_06540 PF00989 PAS fold HPY12_06540 PF17203 Single cache domain 3 HPY12_06545 PF00072 Response regulator receiver domain HPY12_06545 PF12431 Transcriptional regulator HPY12_06555 PF00072 Response regulator receiver domain HPY12_06555 PF01584 CheW-like domain HPY12_06575 PF00072 Response regulator receiver domain HPY12_06575 PF00990 Diguanylate cyclase, GGDEF domain HPY12_06595 PF07690 Major Facilitator Superfamily HPY12_06600 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HPY12_06600 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HPY12_06605 PF08544 GHMP kinases C terminal HPY12_06605 PF00288 GHMP kinases N terminal domain HPY12_06605 PF10509 Galactokinase galactose-binding signature HPY12_06610 PF01263 Aldose 1-epimerase HPY12_06615 PF00990 Diguanylate cyclase, GGDEF domain HPY12_06620 PF00672 HAMP domain HPY12_06620 PF00563 EAL domain HPY12_06620 PF00990 Diguanylate cyclase, GGDEF domain HPY12_06620 PF17154 Gammaproteobacterial periplasmic sensor domain HPY12_06630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY12_06630 PF00205 Thiamine pyrophosphate enzyme, central domain HPY12_06630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY12_06635 PF03306 Alpha-acetolactate decarboxylase HPY12_06640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_06640 PF03466 LysR substrate binding domain HPY12_06645 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) HPY12_06650 PF00361 Proton-conducting membrane transporter HPY12_06650 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY12_06655 PF03466 LysR substrate binding domain HPY12_06655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_06660 PF00501 AMP-binding enzyme HPY12_06660 PF13193 AMP-binding enzyme C-terminal domain HPY12_06690 PF10415 Fumarase C C-terminus HPY12_06690 PF00206 Lyase HPY12_06700 PF01654 Cytochrome bd terminal oxidase subunit I HPY12_06705 PF02322 Cytochrome bd terminal oxidase subunit II HPY12_06710 PF02687 FtsX-like permease family HPY12_06710 PF12704 MacB-like periplasmic core domain HPY12_06710 PF00005 ABC transporter HPY12_06715 PF12704 MacB-like periplasmic core domain HPY12_06715 PF02687 FtsX-like permease family HPY12_06715 PF00005 ABC transporter HPY12_06720 PF12704 MacB-like periplasmic core domain HPY12_06720 PF00005 ABC transporter HPY12_06720 PF02687 FtsX-like permease family HPY12_06730 PF00529 HlyD membrane-fusion protein of T1SS HPY12_06740 PF03466 LysR substrate binding domain HPY12_06740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_06745 PF00141 Peroxidase HPY12_06750 PF00232 Glycosyl hydrolase family 1 HPY12_06755 PF00356 Bacterial regulatory proteins, lacI family HPY12_06760 PF01042 Endoribonuclease L-PSP HPY12_06765 PF04074 YhcH/YjgK/YiaL HPY12_06770 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY12_06775 PF00455 DeoR C terminal sensor domain HPY12_06775 PF08220 DeoR-like helix-turn-helix domain HPY12_06780 PF00005 ABC transporter HPY12_06780 PF17912 MalK OB fold domain HPY12_06785 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_06790 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_06795 PF13416 Bacterial extracellular solute-binding protein HPY12_06805 PF01618 MotA/TolQ/ExbB proton channel family HPY12_06810 PF01618 MotA/TolQ/ExbB proton channel family HPY12_06815 PF02472 Biopolymer transport protein ExbD/TolR HPY12_06820 PF03544 Gram-negative bacterial TonB protein C-terminal HPY12_06830 PF14743 DNA ligase OB-like domain HPY12_06830 PF01068 ATP dependent DNA ligase domain HPY12_06840 PF01554 MatE HPY12_06850 PF03881 Fructosamine kinase HPY12_06860 PF00877 NlpC/P60 family HPY12_06865 PF00672 HAMP domain HPY12_06865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_06865 PF17202 Single cache domain 3 HPY12_06880 PF00480 ROK family HPY12_06890 PF03454 MoeA C-terminal region (domain IV) HPY12_06890 PF03453 MoeA N-terminal region (domain I and II) HPY12_06890 PF00994 Probable molybdopterin binding domain HPY12_06895 PF12804 MobA-like NTP transferase domain HPY12_06900 PF08402 TOBE domain HPY12_06900 PF00005 ABC transporter HPY12_06905 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_06910 PF12849 PBP superfamily domain HPY12_06915 PF02954 Bacterial regulatory protein, Fis family HPY12_06915 PF00158 Sigma-54 interaction domain HPY12_06915 PF00072 Response regulator receiver domain HPY12_06920 PF00512 His Kinase A (phospho-acceptor) domain HPY12_06920 PF00989 PAS fold HPY12_06920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_06925 PF12848 ABC transporter HPY12_06925 PF00005 ABC transporter HPY12_06930 PF02634 FdhD/NarQ family HPY12_06950 PF02613 Nitrate reductase delta subunit HPY12_06960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY12_06960 PF01568 Molydopterin dinucleotide binding domain HPY12_06960 PF00384 Molybdopterin oxidoreductase HPY12_06965 PF13247 4Fe-4S dicluster domain HPY12_06980 PF02146 Sir2 family HPY12_06985 PF04461 Protein of unknown function (DUF520) HPY12_06990 PF00793 DAHP synthetase I family HPY12_07005 PF13509 S1 domain HPY12_07005 PF17783 CvfB-like winged helix domain HPY12_07010 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HPY12_07010 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HPY12_07010 PF01189 16S rRNA methyltransferase RsmB/F HPY12_07020 PF04403 Paraquat-inducible protein A HPY12_07025 PF00005 ABC transporter HPY12_07025 PF00664 ABC transporter transmembrane region HPY12_07030 PF13185 GAF domain HPY12_07035 PF04352 ProQ/FINO family HPY12_07035 PF17516 ProQ C-terminal domain HPY12_07040 PF00595 PDZ domain HPY12_07040 PF17804 Tail specific protease N-terminal domain HPY12_07040 PF03572 Peptidase family S41 HPY12_07040 PF11818 C-terminal domain of tail specific protease (DUF3340) HPY12_07050 PF11940 Domain of unknown function (DUF3458) Ig-like fold HPY12_07050 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HPY12_07050 PF01433 Peptidase family M1 domain HPY12_07060 PF05088 Bacterial NAD-glutamate dehydrogenase HPY12_07065 PF01180 Dihydroorotate dehydrogenase HPY12_07070 PF07126 Cell-division protein ZapC HPY12_07075 PF02926 THUMP domain HPY12_07075 PF10672 S-adenosylmethionine-dependent methyltransferase HPY12_07075 PF01170 Putative RNA methylase family UPF0020 HPY12_07095 PF04957 Ribosome modulation factor HPY12_07100 PF07977 FabA-like domain HPY12_07105 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY12_07105 PF13654 AAA domain HPY12_07110 PF06303 MatP N-terminal domain HPY12_07110 PF17414 MatP C-terminal ribbon-helix-helix domain HPY12_07130 PF01797 Transposase IS200 like HPY12_07210 PF12146 Serine aminopeptidase, S33 HPY12_07210 PF11647 Membrane Localization Domain HPY12_07210 PF11713 Peptidase C80 family HPY12_07210 PF16671 Actin cross-linking domain HPY12_07210 PF07634 RtxA repeat HPY12_07215 PF02794 RTX toxin acyltransferase family HPY12_07225 PF00005 ABC transporter HPY12_07225 PF03412 Peptidase C39 family HPY12_07225 PF00664 ABC transporter transmembrane region HPY12_07235 PF00664 ABC transporter transmembrane region HPY12_07235 PF03412 Peptidase C39 family HPY12_07235 PF00005 ABC transporter HPY12_07240 PF00072 Response regulator receiver domain HPY12_07240 PF09308 LuxQ, periplasmic HPY12_07240 PF00512 His Kinase A (phospho-acceptor) domain HPY12_07240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_07255 PF00115 Cytochrome C and Quinol oxidase polypeptide I HPY12_07270 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY12_07270 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HPY12_07280 PF00403 Heavy-metal-associated domain HPY12_07295 PF00027 Cyclic nucleotide-binding domain HPY12_07295 PF13545 Crp-like helix-turn-helix domain HPY12_07300 PF00582 Universal stress protein family HPY12_07305 PF01171 PP-loop family HPY12_07325 PF08402 TOBE domain HPY12_07325 PF00005 ABC transporter HPY12_07330 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_07335 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_07340 PF13416 Bacterial extracellular solute-binding protein HPY12_07345 PF13416 Bacterial extracellular solute-binding protein HPY12_07355 PF01235 Sodium:alanine symporter family HPY12_07380 PF16671 Actin cross-linking domain HPY12_07380 PF04717 Type VI secretion system, phage-baseplate injector HPY12_07385 PF05638 Type VI secretion system effector, Hcp HPY12_07390 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HPY12_07395 PF02743 Cache domain HPY12_07395 PF00672 HAMP domain HPY12_07395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_07400 PF07690 Major Facilitator Superfamily HPY12_07405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY12_07405 PF00529 HlyD membrane-fusion protein of T1SS HPY12_07410 PF02321 Outer membrane efflux protein HPY12_07420 PF00270 DEAD/DEAH box helicase HPY12_07420 PF00271 Helicase conserved C-terminal domain HPY12_07425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_07425 PF08447 PAS fold HPY12_07425 PF13426 PAS domain HPY12_07430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_07430 PF12729 Four helix bundle sensory module for signal transduction HPY12_07430 PF00672 HAMP domain HPY12_07435 PF00672 HAMP domain HPY12_07435 PF17202 Single cache domain 3 HPY12_07435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_07440 PF01584 CheW-like domain HPY12_07445 PF00072 Response regulator receiver domain HPY12_07445 PF01339 CheB methylesterase HPY12_07455 PF03705 CheR methyltransferase, all-alpha domain HPY12_07455 PF01739 CheR methyltransferase, SAM binding domain HPY12_07460 PF01627 Hpt domain HPY12_07460 PF01584 CheW-like domain HPY12_07460 PF00072 Response regulator receiver domain HPY12_07460 PF02895 Signal transducing histidine kinase, homodimeric domain HPY12_07460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_07465 PF01627 Hpt domain HPY12_07465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_07465 PF02895 Signal transducing histidine kinase, homodimeric domain HPY12_07465 PF01584 CheW-like domain HPY12_07465 PF07194 P2 response regulator binding domain HPY12_07475 PF00072 Response regulator receiver domain HPY12_07480 PF00672 HAMP domain HPY12_07480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_07485 PF00893 Small Multidrug Resistance protein HPY12_07490 PF00875 DNA photolyase HPY12_07490 PF03441 FAD binding domain of DNA photolyase HPY12_07495 PF07690 Major Facilitator Superfamily HPY12_07500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_07500 PF03466 LysR substrate binding domain HPY12_07510 PF10437 Bacterial lipoate protein ligase C-terminus HPY12_07510 PF03099 Biotin/lipoate A/B protein ligase family HPY12_07515 PF00012 Hsp70 protein HPY12_07525 PF04408 Helicase associated domain (HA2) HPY12_07525 PF00271 Helicase conserved C-terminal domain HPY12_07525 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HPY12_07525 PF11898 Domain of unknown function (DUF3418) HPY12_07525 PF00270 DEAD/DEAH box helicase HPY12_07545 PF00990 Diguanylate cyclase, GGDEF domain HPY12_07545 PF00563 EAL domain HPY12_07545 PF03707 Bacterial signalling protein N terminal repeat HPY12_07555 PF00012 Hsp70 protein HPY12_07560 PF00012 Hsp70 protein HPY12_07565 PF00990 Diguanylate cyclase, GGDEF domain HPY12_07565 PF17158 Membrane-associated sensor, integral membrane domain HPY12_07575 PF00563 EAL domain HPY12_07575 PF03707 Bacterial signalling protein N terminal repeat HPY12_07575 PF00990 Diguanylate cyclase, GGDEF domain HPY12_07595 PF06508 Queuosine biosynthesis protein QueC HPY12_07600 PF04055 Radical SAM superfamily HPY12_07610 PF14824 Sirohaem biosynthesis protein central HPY12_07610 PF10414 Sirohaem synthase dimerisation region HPY12_07610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY12_07615 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY12_07620 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_07625 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_07630 PF00005 ABC transporter HPY12_07635 PF01027 Inhibitor of apoptosis-promoting Bax1 HPY12_07640 PF04358 DsrC like protein HPY12_07645 PF00708 Acylphosphatase HPY12_07650 PF17785 PUA-like domain HPY12_07650 PF10672 S-adenosylmethionine-dependent methyltransferase HPY12_07655 PF00990 Diguanylate cyclase, GGDEF domain HPY12_07660 PF00462 Glutaredoxin HPY12_07660 PF08534 Redoxin HPY12_07665 PF00672 HAMP domain HPY12_07665 PF00072 Response regulator receiver domain HPY12_07665 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY12_07665 PF01627 Hpt domain HPY12_07665 PF00512 His Kinase A (phospho-acceptor) domain HPY12_07665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_07670 PF00072 Response regulator receiver domain HPY12_07675 PF14497 Glutathione S-transferase, C-terminal domain HPY12_07675 PF02798 Glutathione S-transferase, N-terminal domain HPY12_07685 PF04209 homogentisate 1,2-dioxygenase HPY12_07690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY12_07695 PF01546 Peptidase family M20/M25/M40 HPY12_07695 PF07687 Peptidase dimerisation domain HPY12_07710 PF13193 AMP-binding enzyme C-terminal domain HPY12_07710 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY12_07710 PF00501 AMP-binding enzyme HPY12_07715 PF04303 PrpF protein HPY12_07720 PF00694 Aconitase C-terminal domain HPY12_07720 PF00330 Aconitase family (aconitate hydratase) HPY12_07725 PF00285 Citrate synthase, C-terminal domain HPY12_07735 PF07729 FCD domain HPY12_07735 PF00392 Bacterial regulatory proteins, gntR family HPY12_07750 PF01970 Tripartite tricarboxylate transporter TctA family HPY12_07770 PF00529 HlyD membrane-fusion protein of T1SS HPY12_07770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY12_07785 PF02653 Branched-chain amino acid transport system / permease component HPY12_07790 PF00005 ABC transporter HPY12_07795 PF13407 Periplasmic binding protein domain HPY12_07815 PF00486 Transcriptional regulatory protein, C terminal HPY12_07815 PF00072 Response regulator receiver domain HPY12_07820 PF00512 His Kinase A (phospho-acceptor) domain HPY12_07820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_07820 PF00672 HAMP domain HPY12_07825 PF06629 MltA-interacting protein MipA HPY12_07830 PF04393 Protein of unknown function (DUF535) HPY12_07835 PF00158 Sigma-54 interaction domain HPY12_07835 PF00072 Response regulator receiver domain HPY12_07835 PF02954 Bacterial regulatory protein, Fis family HPY12_07840 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY12_07840 PF00512 His Kinase A (phospho-acceptor) domain HPY12_07840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_07845 PF00939 Sodium:sulfate symporter transmembrane region HPY12_07850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_07850 PF00672 HAMP domain HPY12_07855 PF00842 Alanine racemase, C-terminal domain HPY12_07855 PF01168 Alanine racemase, N-terminal domain HPY12_07860 PF00892 EamA-like transporter family HPY12_07870 PF13302 Acetyltransferase (GNAT) domain HPY12_07875 PF18024 Helix-turn-helix domain HPY12_07875 PF00158 Sigma-54 interaction domain HPY12_07880 PF05128 Domain of unknown function (DUF697) HPY12_07885 PF04317 YcjX-like family, DUF463 HPY12_07900 PF04715 Anthranilate synthase component I, N terminal region HPY12_07900 PF00425 chorismate binding enzyme HPY12_07905 PF00293 NUDIX domain HPY12_07910 PF03222 Tryptophan/tyrosine permease family HPY12_07915 PF03313 Serine dehydratase alpha chain HPY12_07915 PF03315 Serine dehydratase beta chain HPY12_07920 PF01242 6-pyruvoyl tetrahydropterin synthase HPY12_07925 PF00672 HAMP domain HPY12_07925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_07930 PF01336 OB-fold nucleic acid binding domain HPY12_07930 PF00152 tRNA synthetases class II (D, K and N) HPY12_07935 PF08543 Phosphomethylpyrimidine kinase HPY12_07940 PF01966 HD domain HPY12_07940 PF00672 HAMP domain HPY12_07945 PF00155 Aminotransferase class I and II HPY12_07960 PF00672 HAMP domain HPY12_07960 PF17200 Single Cache domain 2 HPY12_07960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_07965 PF04349 Periplasmic glucan biosynthesis protein, MdoG HPY12_07970 PF13506 Glycosyl transferase family 21 HPY12_07975 PF00356 Bacterial regulatory proteins, lacI family HPY12_07980 PF04794 YdjC-like protein HPY12_07985 PF02056 Family 4 glycosyl hydrolase HPY12_07985 PF11975 Family 4 glycosyl hydrolase C-terminal domain HPY12_07990 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HPY12_08000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY12_08005 PF01522 Polysaccharide deacetylase HPY12_08010 PF02028 BCCT, betaine/carnitine/choline family transporter HPY12_08020 PF00196 Bacterial regulatory proteins, luxR family HPY12_08020 PF00072 Response regulator receiver domain HPY12_08025 PF17200 Single Cache domain 2 HPY12_08025 PF07730 Histidine kinase HPY12_08030 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY12_08040 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY12_08055 PF00753 Metallo-beta-lactamase superfamily HPY12_08060 PF05951 Bacterial protein of unknown function (DUF882) HPY12_08090 PF00925 GTP cyclohydrolase II HPY12_08100 PF07690 Major Facilitator Superfamily HPY12_08115 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY12_08115 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY12_08125 PF00317 Ribonucleotide reductase, all-alpha domain HPY12_08125 PF02867 Ribonucleotide reductase, barrel domain HPY12_08125 PF03477 ATP cone domain HPY12_08130 PF00268 Ribonucleotide reductase, small chain HPY12_08135 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY12_08135 PF00175 Oxidoreductase NAD-binding domain HPY12_08135 PF00970 Oxidoreductase FAD-binding domain HPY12_08145 PF00994 Probable molybdopterin binding domain HPY12_08160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_08160 PF17200 Single Cache domain 2 HPY12_08160 PF00672 HAMP domain HPY12_08175 PF00005 ABC transporter HPY12_08180 PF01032 FecCD transport family HPY12_08185 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HPY12_08195 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HPY12_08200 PF02654 Cobalamin-5-phosphate synthase HPY12_08205 PF02277 Phosphoribosyltransferase HPY12_08210 PF01641 SelR domain HPY12_08220 PF00817 impB/mucB/samB family HPY12_08220 PF13438 Domain of unknown function (DUF4113) HPY12_08220 PF11799 impB/mucB/samB family C-terminal domain HPY12_08225 PF00717 Peptidase S24-like HPY12_08275 PF04984 Phage tail sheath protein subtilisin-like domain HPY12_08275 PF17482 Phage tail sheath C-terminal domain HPY12_08390 PF01695 IstB-like ATP binding protein HPY12_08460 PF13356 Arm DNA-binding domain HPY12_08460 PF14659 Phage integrase, N-terminal SAM-like domain HPY12_08460 PF00589 Phage integrase family HPY12_08465 PF00929 Exonuclease HPY12_08465 PF08411 Exonuclease C-terminal HPY12_08470 PF03788 LrgA family HPY12_08475 PF04172 LrgB-like family HPY12_08480 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HPY12_08480 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY12_08490 PF02222 ATP-grasp domain HPY12_08495 PF05724 Thiopurine S-methyltransferase (TPMT) HPY12_08505 PF00216 Bacterial DNA-binding protein HPY12_08510 PF03147 Ferredoxin-fold anticodon binding domain HPY12_08510 PF01588 Putative tRNA binding domain HPY12_08510 PF03484 tRNA synthetase B5 domain HPY12_08510 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HPY12_08510 PF03483 B3/4 domain HPY12_08515 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HPY12_08515 PF01409 tRNA synthetases class II core domain (F) HPY12_08525 PF00990 Diguanylate cyclase, GGDEF domain HPY12_08525 PF00072 Response regulator receiver domain HPY12_08550 PF01066 CDP-alcohol phosphatidyltransferase HPY12_08555 PF08459 UvrC Helix-hairpin-helix N-terminal HPY12_08555 PF02151 UvrB/uvrC motif HPY12_08555 PF01541 GIY-YIG catalytic domain HPY12_08560 PF00072 Response regulator receiver domain HPY12_08560 PF00196 Bacterial regulatory proteins, luxR family HPY12_08565 PF00136 DNA polymerase family B HPY12_08565 PF03104 DNA polymerase family B, exonuclease domain HPY12_08570 PF00563 EAL domain HPY12_08570 PF13426 PAS domain HPY12_08570 PF00990 Diguanylate cyclase, GGDEF domain HPY12_08580 PF08207 Elongation factor P (EF-P) KOW-like domain HPY12_08580 PF09285 Elongation factor P, C-terminal HPY12_08580 PF01132 Elongation factor P (EF-P) OB domain HPY12_08585 PF04269 Protein of unknown function, DUF440 HPY12_08595 PF07702 UTRA domain HPY12_08595 PF00392 Bacterial regulatory proteins, gntR family HPY12_08600 PF01979 Amidohydrolase family HPY12_08605 PF00491 Arginase family HPY12_08610 PF17391 Urocanase N-terminal domain HPY12_08610 PF01175 Urocanase Rossmann-like domain HPY12_08610 PF17392 Urocanase C-terminal domain HPY12_08615 PF00221 Aromatic amino acid lyase HPY12_08625 PF00089 Trypsin HPY12_08630 PF04191 Phospholipid methyltransferase HPY12_08635 PF02913 FAD linked oxidases, C-terminal domain HPY12_08635 PF13183 4Fe-4S dicluster domain HPY12_08635 PF01565 FAD binding domain HPY12_08650 PF00691 OmpA family HPY12_08650 PF13488 Glycine zipper HPY12_08670 PF01259 SAICAR synthetase HPY12_08680 PF03949 Malic enzyme, NAD binding domain HPY12_08680 PF00390 Malic enzyme, N-terminal domain HPY12_08690 PF02698 DUF218 domain HPY12_08695 PF00990 Diguanylate cyclase, GGDEF domain HPY12_08695 PF00072 Response regulator receiver domain HPY12_08700 PF00266 Aminotransferase class-V HPY12_08710 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY12_08715 PF00005 ABC transporter HPY12_08715 PF00664 ABC transporter transmembrane region HPY12_08720 PF00005 ABC transporter HPY12_08720 PF00664 ABC transporter transmembrane region HPY12_08725 PF00849 RNA pseudouridylate synthase HPY12_08725 PF01479 S4 domain HPY12_08730 PF01300 Telomere recombination HPY12_08735 PF02811 PHP domain HPY12_08740 PF08056 Tryptophan operon leader peptide HPY12_08745 PF04715 Anthranilate synthase component I, N terminal region HPY12_08745 PF00425 chorismate binding enzyme HPY12_08750 PF00117 Glutamine amidotransferase class-I HPY12_08755 PF00591 Glycosyl transferase family, a/b domain HPY12_08755 PF02885 Glycosyl transferase family, helical bundle domain HPY12_08760 PF00218 Indole-3-glycerol phosphate synthase HPY12_08760 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HPY12_08765 PF00291 Pyridoxal-phosphate dependent enzyme HPY12_08770 PF00290 Tryptophan synthase alpha chain HPY12_08775 PF00375 Sodium:dicarboxylate symporter family HPY12_08780 PF00265 Thymidine kinase HPY12_08785 PF02938 GAD domain HPY12_08785 PF01336 OB-fold nucleic acid binding domain HPY12_08785 PF00152 tRNA synthetases class II (D, K and N) HPY12_08790 PF01904 Protein of unknown function DUF72 HPY12_08795 PF13649 Methyltransferase domain HPY12_08800 PF08003 Protein of unknown function (DUF1698) HPY12_08805 PF08443 RimK-like ATP-grasp domain HPY12_08805 PF18030 RimK PreATP-grasp domain HPY12_08820 PF00266 Aminotransferase class-V HPY12_08830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_08830 PF00989 PAS fold HPY12_08830 PF00512 His Kinase A (phospho-acceptor) domain HPY12_08845 PF04993 TfoX N-terminal domain HPY12_08845 PF04994 TfoX C-terminal domain HPY12_08855 PF03956 Lysine exporter LysO HPY12_08865 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY12_08870 PF01418 Helix-turn-helix domain, rpiR family HPY12_08870 PF01380 SIS domain HPY12_08875 PF00171 Aldehyde dehydrogenase family HPY12_08875 PF00465 Iron-containing alcohol dehydrogenase HPY12_08880 PF00462 Glutaredoxin HPY12_08885 PF02080 TrkA-C domain HPY12_08885 PF06826 Predicted Permease Membrane Region HPY12_08890 PF00004 ATPase family associated with various cellular activities (AAA) HPY12_08890 PF10431 C-terminal, D2-small domain, of ClpB protein HPY12_08890 PF02861 Clp amino terminal domain, pathogenicity island component HPY12_08890 PF07724 AAA domain (Cdc48 subfamily) HPY12_08890 PF17871 AAA lid domain HPY12_08895 PF02617 ATP-dependent Clp protease adaptor protein ClpS HPY12_08900 PF00313 'Cold-shock' DNA-binding domain HPY12_08905 PF03971 Monomeric isocitrate dehydrogenase HPY12_08910 PF00849 RNA pseudouridylate synthase HPY12_08915 PF01502 Phosphoribosyl-AMP cyclohydrolase HPY12_08915 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HPY12_08920 PF00977 Histidine biosynthesis protein HPY12_08925 PF00977 Histidine biosynthesis protein HPY12_08930 PF00117 Glutamine amidotransferase class-I HPY12_08935 PF08645 Polynucleotide kinase 3 phosphatase HPY12_08935 PF00475 Imidazoleglycerol-phosphate dehydratase HPY12_08940 PF00155 Aminotransferase class I and II HPY12_08945 PF00815 Histidinol dehydrogenase HPY12_08950 PF01634 ATP phosphoribosyltransferase HPY12_08950 PF08029 HisG, C-terminal domain HPY12_08955 PF03553 Na+/H+ antiporter family HPY12_08960 PF00816 H-NS histone family HPY12_08965 PF00294 pfkB family carbohydrate kinase HPY12_08975 PF04356 Protein of unknown function (DUF489) HPY12_08980 PF08328 Adenylosuccinate lyase C-terminal HPY12_08980 PF00206 Lyase HPY12_09015 PF00106 short chain dehydrogenase HPY12_09025 PF01435 Peptidase family M48 HPY12_09040 PF08241 Methyltransferase domain HPY12_09045 PF00155 Aminotransferase class I and II HPY12_09050 PF04055 Radical SAM superfamily HPY12_09050 PF06968 Biotin and Thiamin Synthesis associated domain HPY12_09055 PF00202 Aminotransferase class-III HPY12_09060 PF02403 Seryl-tRNA synthetase N-terminal domain HPY12_09060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY12_09065 PF12002 MgsA AAA+ ATPase C terminal HPY12_09065 PF00004 ATPase family associated with various cellular activities (AAA) HPY12_09065 PF16193 AAA C-terminal domain HPY12_09070 PF03548 Outer membrane lipoprotein carrier protein LolA HPY12_09075 PF02810 SEC-C motif HPY12_09075 PF07517 SecA DEAD-like domain HPY12_09075 PF01043 SecA preprotein cross-linking domain HPY12_09075 PF07516 SecA Wing and Scaffold domain HPY12_09080 PF01207 Dihydrouridine synthase (Dus) HPY12_09085 PF00990 Diguanylate cyclase, GGDEF domain HPY12_09090 PF00005 ABC transporter HPY12_09095 PF02653 Branched-chain amino acid transport system / permease component HPY12_09105 PF09905 DNA-binding protein VF530 HPY12_09110 PF04217 Protein of unknown function, DUF412 HPY12_09115 PF00871 Acetokinase family HPY12_09120 PF07085 DRTGG domain HPY12_09120 PF01515 Phosphate acetyl/butaryl transferase HPY12_09125 PF13409 Glutathione S-transferase, N-terminal domain HPY12_09130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY12_09130 PF00005 ABC transporter HPY12_09135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY12_09135 PF00005 ABC transporter HPY12_09140 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_09140 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY12_09145 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_09150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY12_09160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_09160 PF13188 PAS domain HPY12_09160 PF08448 PAS fold HPY12_09160 PF00512 His Kinase A (phospho-acceptor) domain HPY12_09160 PF00072 Response regulator receiver domain HPY12_09165 PF02954 Bacterial regulatory protein, Fis family HPY12_09165 PF00072 Response regulator receiver domain HPY12_09165 PF00158 Sigma-54 interaction domain HPY12_09170 PF00563 EAL domain HPY12_09170 PF00990 Diguanylate cyclase, GGDEF domain HPY12_09170 PF13188 PAS domain HPY12_09170 PF03707 Bacterial signalling protein N terminal repeat HPY12_09175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_09175 PF00512 His Kinase A (phospho-acceptor) domain HPY12_09180 PF00989 PAS fold HPY12_09180 PF00512 His Kinase A (phospho-acceptor) domain HPY12_09180 PF13188 PAS domain HPY12_09180 PF13426 PAS domain HPY12_09180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_09190 PF00072 Response regulator receiver domain HPY12_09205 PF03481 Putative GTP-binding controlling metal-binding HPY12_09205 PF01300 Telomere recombination HPY12_09220 PF01161 Phosphatidylethanolamine-binding protein HPY12_09245 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY12_09245 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY12_09250 PF01022 Bacterial regulatory protein, arsR family HPY12_09260 PF00990 Diguanylate cyclase, GGDEF domain HPY12_09260 PF08448 PAS fold HPY12_09270 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY12_09285 PF01037 Lrp/AsnC ligand binding domain HPY12_09285 PF13404 AsnC-type helix-turn-helix domain HPY12_09290 PF00291 Pyridoxal-phosphate dependent enzyme HPY12_09295 PF08496 Peptidase family S49 N-terminal HPY12_09295 PF01343 Peptidase family S49 HPY12_09300 PF00106 short chain dehydrogenase HPY12_09305 PF03692 Putative zinc- or iron-chelating domain HPY12_09310 PF03692 Putative zinc- or iron-chelating domain HPY12_09315 PF13662 Toprim domain HPY12_09315 PF02132 RecR protein HPY12_09320 PF02575 YbaB/EbfC DNA-binding family HPY12_09325 PF12169 DNA polymerase III subunits gamma and tau domain III HPY12_09325 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HPY12_09325 PF12170 DNA polymerase III tau subunit V interacting with alpha HPY12_09330 PF00156 Phosphoribosyl transferase domain HPY12_09335 PF04304 Protein of unknown function (DUF454) HPY12_09340 PF00072 Response regulator receiver domain HPY12_09345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_09345 PF03466 LysR substrate binding domain HPY12_09350 PF00881 Nitroreductase family HPY12_09355 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY12_09355 PF00378 Enoyl-CoA hydratase/isomerase HPY12_09355 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY12_09360 PF00108 Thiolase, N-terminal domain HPY12_09360 PF02803 Thiolase, C-terminal domain HPY12_09365 PF08281 Sigma-70, region 4 HPY12_09365 PF04542 Sigma-70 region 2 HPY12_09375 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY12_09380 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY12_09385 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY12_09390 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HPY12_09390 PF12557 Cob(I)alamin adenosyltransferase N terminal HPY12_09400 PF05170 AsmA family HPY12_09405 PF00485 Phosphoribulokinase / Uridine kinase family HPY12_09410 PF10609 NUBPL iron-transfer P-loop NTPase HPY12_09415 PF01588 Putative tRNA binding domain HPY12_09415 PF09334 tRNA synthetases class I (M) HPY12_09425 PF01048 Phosphorylase superfamily HPY12_09430 PF00403 Heavy-metal-associated domain HPY12_09435 PF01743 Poly A polymerase head domain HPY12_09435 PF00571 CBS domain HPY12_09440 PF00990 Diguanylate cyclase, GGDEF domain HPY12_09440 PF07694 5TMR of 5TMR-LYT HPY12_09445 PF02391 MoaE protein HPY12_09450 PF02597 ThiS family HPY12_09455 PF01967 MoaC family HPY12_09460 PF00994 Probable molybdopterin binding domain HPY12_09465 PF06463 Molybdenum Cofactor Synthesis C HPY12_09465 PF04055 Radical SAM superfamily HPY12_09470 PF01933 Uncharacterised protein family UPF0052 HPY12_09475 PF01627 Hpt domain HPY12_09480 PF00158 Sigma-54 interaction domain HPY12_09480 PF02954 Bacterial regulatory protein, Fis family HPY12_09480 PF00072 Response regulator receiver domain HPY12_09485 PF02151 UvrB/uvrC motif HPY12_09485 PF04851 Type III restriction enzyme, res subunit HPY12_09485 PF00271 Helicase conserved C-terminal domain HPY12_09485 PF12344 Ultra-violet resistance protein B HPY12_09485 PF17757 UvrB interaction domain HPY12_09495 PF13356 Arm DNA-binding domain HPY12_09495 PF00589 Phage integrase family HPY12_09525 PF04002 RadC-like JAB domain HPY12_09560 PF04829 Pre-toxin domain with VENN motif HPY12_09560 PF13332 Hemagglutinin repeat HPY12_09560 PF05594 Haemagluttinin repeat HPY12_09560 PF05860 haemagglutination activity domain HPY12_09560 PF14436 Bacterial EndoU nuclease HPY12_09560 PF05860 haemagglutination activity domain HPY12_09560 PF13332 Hemagglutinin repeat HPY12_09560 PF05594 Haemagluttinin repeat HPY12_09560 PF14436 Bacterial EndoU nuclease HPY12_09560 PF04829 Pre-toxin domain with VENN motif HPY12_09565 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HPY12_09565 PF17287 POTRA domain HPY12_09565 PF08479 POTRA domain, ShlB-type HPY12_09595 PF02508 Rnf-Nqr subunit, membrane protein HPY12_09600 PF04060 Putative Fe-S cluster HPY12_09605 PF13375 RnfC Barrel sandwich hybrid domain HPY12_09605 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HPY12_09605 PF10531 SLBB domain HPY12_09605 PF12838 4Fe-4S dicluster domain HPY12_09610 PF03116 NQR2, RnfD, RnfE family HPY12_09615 PF04205 FMN-binding domain HPY12_09620 PF02508 Rnf-Nqr subunit, membrane protein HPY12_09625 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY12_09625 PF00633 Helix-hairpin-helix motif HPY12_09625 PF10576 Iron-sulfur binding domain of endonuclease III HPY12_09630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY12_09635 PF10952 Protein of unknown function (DUF2753) HPY12_09640 PF00691 OmpA family HPY12_09640 PF18393 MotY N-terminal domain HPY12_09650 PF13726 Na+-H+ antiporter family HPY12_09650 PF03553 Na+/H+ antiporter family HPY12_09655 PF00156 Phosphoribosyl transferase domain HPY12_09660 PF02674 Colicin V production protein HPY12_09665 PF05036 Sporulation related domain HPY12_09670 PF02875 Mur ligase family, glutamate ligase domain HPY12_09670 PF08245 Mur ligase middle domain HPY12_09675 PF17848 Acetyl-coA carboxylase zinc finger domain HPY12_09675 PF01039 Carboxyl transferase domain HPY12_09680 PF01416 tRNA pseudouridine synthase HPY12_09690 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY12_09690 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HPY12_09695 PF00367 phosphotransferase system, EIIB HPY12_09695 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY12_09695 PF02378 Phosphotransferase system, EIIC HPY12_09700 PF01979 Amidohydrolase family HPY12_09705 PF01047 MarR family HPY12_09705 PF00480 ROK family HPY12_09710 PF00999 Sodium/hydrogen exchanger family HPY12_09710 PF02254 TrkA-N domain HPY12_09715 PF00733 Asparagine synthase HPY12_09715 PF13537 Glutamine amidotransferase domain HPY12_09720 PF02357 Transcription termination factor nusG HPY12_09725 PF00854 POT family HPY12_09730 PF00762 Ferrochelatase HPY12_09735 PF05191 Adenylate kinase, active site lid HPY12_09740 PF00183 Hsp90 protein HPY12_09740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_09745 PF00486 Transcriptional regulatory protein, C terminal HPY12_09750 PF17323 Trans-membrane regulatory protein ToxS HPY12_09760 PF12850 Calcineurin-like phosphoesterase superfamily domain HPY12_09765 PF08338 Domain of unknown function (DUF1731) HPY12_09765 PF01370 NAD dependent epimerase/dehydratase family HPY12_09770 PF00106 short chain dehydrogenase HPY12_09775 PF00085 Thioredoxin HPY12_09780 PF16200 C-terminal region of band_7 HPY12_09780 PF01145 SPFH domain / Band 7 family HPY12_09785 PF01957 NfeD-like C-terminal, partner-binding HPY12_09790 PF13411 MerR HTH family regulatory protein HPY12_09800 PF13609 Gram-negative porin HPY12_09805 PF03120 NAD-dependent DNA ligase OB-fold domain HPY12_09805 PF01653 NAD-dependent DNA ligase adenylation domain HPY12_09805 PF00533 BRCA1 C Terminus (BRCT) domain HPY12_09805 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HPY12_09805 PF12826 Helix-hairpin-helix motif HPY12_09810 PF04354 ZipA, C-terminal FtsZ-binding domain HPY12_09825 PF00381 PTS HPr component phosphorylation site HPY12_09830 PF05524 PEP-utilising enzyme, N-terminal HPY12_09830 PF00391 PEP-utilising enzyme, mobile domain HPY12_09830 PF02896 PEP-utilising enzyme, TIM barrel domain HPY12_09835 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY12_09840 PF01494 FAD binding domain HPY12_09845 PF00919 Uncharacterized protein family UPF0004 HPY12_09845 PF01938 TRAM domain HPY12_09845 PF04055 Radical SAM superfamily HPY12_09850 PF02562 PhoH-like protein HPY12_09855 PF02130 Uncharacterized protein family UPF0054 HPY12_09860 PF03471 Transporter associated domain HPY12_09860 PF00571 CBS domain HPY12_09865 PF00795 Carbon-nitrogen hydrolase HPY12_09870 PF07295 Zinc-ribbon containing domain HPY12_09875 PF08264 Anticodon-binding domain of tRNA HPY12_09875 PF13603 Leucyl-tRNA synthetase, Domain 2 HPY12_09875 PF00133 tRNA synthetases class I (I, L, M and V) HPY12_09880 PF04390 Lipopolysaccharide-assembly HPY12_09910 PF03330 Lytic transglycolase HPY12_09910 PF05036 Sporulation related domain HPY12_09915 PF00768 D-alanyl-D-alanine carboxypeptidase HPY12_09915 PF07943 Penicillin-binding protein 5, C-terminal domain HPY12_09920 PF04359 Protein of unknown function (DUF493) HPY12_09925 PF03099 Biotin/lipoate A/B protein ligase family HPY12_09930 PF04055 Radical SAM superfamily HPY12_09930 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HPY12_09940 PF00464 Serine hydroxymethyltransferase HPY12_09965 PF02563 Polysaccharide biosynthesis/export protein HPY12_09965 PF10531 SLBB domain HPY12_09965 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HPY12_09975 PF02397 Bacterial sugar transferase HPY12_09990 PF12561 ToxR activated gene A lipoprotein domain HPY12_09990 PF17945 Beta/Gamma crystallin HPY12_10005 PF03808 Glycosyl transferase WecB/TagA/CpsF family HPY12_10015 PF00534 Glycosyl transferases group 1 HPY12_10015 PF00862 Sucrose synthase HPY12_10040 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY12_10040 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HPY12_10040 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY12_10045 PF02350 UDP-N-acetylglucosamine 2-epimerase HPY12_10050 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY12_10055 PF00873 AcrB/AcrD/AcrF family HPY12_10060 PF13533 Biotin-lipoyl like HPY12_10085 PF00128 Alpha amylase, catalytic domain HPY12_10085 PF16657 Maltogenic Amylase, C-terminal domain HPY12_10090 PF00367 phosphotransferase system, EIIB HPY12_10090 PF02378 Phosphotransferase system, EIIC HPY12_10095 PF00356 Bacterial regulatory proteins, lacI family HPY12_10105 PF09383 NIL domain HPY12_10105 PF00005 ABC transporter HPY12_10110 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_10115 PF03180 NLPA lipoprotein HPY12_10120 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HPY12_10125 PF07348 Syd protein (SUKH-2) HPY12_10130 PF14489 QueF-like protein HPY12_10130 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HPY12_10140 PF00990 Diguanylate cyclase, GGDEF domain HPY12_10145 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HPY12_10145 PF03641 Possible lysine decarboxylase HPY12_10145 PF11892 Domain of unknown function (DUF3412) HPY12_10150 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY12_10150 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY12_10155 PF04241 Protein of unknown function (DUF423) HPY12_10160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_10160 PF03466 LysR substrate binding domain HPY12_10165 PF02926 THUMP domain HPY12_10165 PF02568 Thiamine biosynthesis protein (ThiI) HPY12_10170 PF00691 OmpA family HPY12_10170 PF13677 Membrane MotB of proton-channel complex MotA/MotB HPY12_10175 PF01618 MotA/TolQ/ExbB proton channel family HPY12_10180 PF02609 Exonuclease VII small subunit HPY12_10185 PF00348 Polyprenyl synthetase HPY12_10190 PF02779 Transketolase, pyrimidine binding domain HPY12_10190 PF02780 Transketolase, C-terminal domain HPY12_10190 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HPY12_10195 PF00849 RNA pseudouridylate synthase HPY12_10200 PF04287 tRNA pseudouridine synthase C HPY12_10215 PF13302 Acetyltransferase (GNAT) domain HPY12_10225 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HPY12_10235 PF00444 Ribosomal protein L36 HPY12_10240 PF01197 Ribosomal protein L31 HPY12_10245 PF18389 TrmO C-terminal domain HPY12_10245 PF01980 tRNA-methyltransferase O HPY12_10250 PF03129 Anticodon binding domain HPY12_10250 PF04073 Aminoacyl-tRNA editing domain HPY12_10250 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY12_10260 PF06786 Uncharacterised protein family (UPF0253) HPY12_10270 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HPY12_10270 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HPY12_10270 PF02769 AIR synthase related protein, C-terminal domain HPY12_10280 PF01464 Transglycosylase SLT domain HPY12_10280 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY12_10285 PF14437 MafB19-like deaminase HPY12_10290 PF03806 AbgT putative transporter family HPY12_10315 PF00114 Pilin (bacterial filament) HPY12_10315 PF07963 Prokaryotic N-terminal methylation motif HPY12_10320 PF00684 DnaJ central domain HPY12_10320 PF00226 DnaJ domain HPY12_10320 PF01556 DnaJ C terminal domain HPY12_10325 PF00012 Hsp70 protein HPY12_10330 PF01025 GrpE HPY12_10335 PF01513 ATP-NAD kinase HPY12_10340 PF02463 RecF/RecN/SMC N terminal domain HPY12_10345 PF04355 SmpA / OmlA family HPY12_10350 PF03658 RnfH family Ubiquitin HPY12_10355 PF03364 Polyketide cyclase / dehydrase and lipid transport HPY12_10360 PF01668 SmpB protein HPY12_10395 PF00266 Aminotransferase class-V HPY12_10465 PF00037 4Fe-4S binding domain HPY12_10465 PF11953 Domain of unknown function (DUF3470) HPY12_10470 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY12_10470 PF00588 SpoU rRNA Methylase family HPY12_10480 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase HPY12_10485 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase HPY12_10490 PF04223 Citrate lyase, alpha subunit (CitF) HPY12_10495 PF03328 HpcH/HpaI aldolase/citrate lyase family HPY12_10500 PF06857 Malonate decarboxylase delta subunit (MdcD) HPY12_10505 PF08218 Citrate lyase ligase C-terminal domain HPY12_10510 PF03390 2-hydroxycarboxylate transporter family HPY12_10515 PF04277 Oxaloacetate decarboxylase, gamma chain HPY12_10520 PF02436 Conserved carboxylase domain HPY12_10520 PF00364 Biotin-requiring enzyme HPY12_10520 PF00682 HMGL-like HPY12_10525 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HPY12_10530 PF17203 Single cache domain 3 HPY12_10530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_10535 PF12431 Transcriptional regulator HPY12_10535 PF00072 Response regulator receiver domain HPY12_10550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_10550 PF03466 LysR substrate binding domain HPY12_10555 PF01266 FAD dependent oxidoreductase HPY12_10560 PF01235 Sodium:alanine symporter family HPY12_10565 PF00753 Metallo-beta-lactamase superfamily HPY12_10565 PF14863 Alkyl sulfatase dimerisation HPY12_10565 PF14864 Alkyl sulfatase C-terminal HPY12_10570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_10570 PF03466 LysR substrate binding domain HPY12_10575 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HPY12_10575 PF01648 4'-phosphopantetheinyl transferase superfamily HPY12_10580 PF00005 ABC transporter HPY12_10585 PF01032 FecCD transport family HPY12_10590 PF01032 FecCD transport family HPY12_10595 PF01497 Periplasmic binding protein HPY12_10610 PF00425 chorismate binding enzyme HPY12_10615 PF13193 AMP-binding enzyme C-terminal domain HPY12_10615 PF00501 AMP-binding enzyme HPY12_10620 PF00857 Isochorismatase family HPY12_10620 PF00550 Phosphopantetheine attachment site HPY12_10625 PF01184 GPR1/FUN34/yaaH family HPY12_10630 PF00704 Glycosyl hydrolases family 18 HPY12_10630 PF06483 Chitinase C HPY12_10635 PF00958 GMP synthase C terminal domain HPY12_10635 PF00117 Glutamine amidotransferase class-I HPY12_10635 PF02540 NAD synthase HPY12_10640 PF00571 CBS domain HPY12_10640 PF00478 IMP dehydrogenase / GMP reductase domain HPY12_10645 PF13742 OB-fold nucleic acid binding domain HPY12_10645 PF02601 Exonuclease VII, large subunit HPY12_10660 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HPY12_10660 PF01926 50S ribosome-binding GTPase HPY12_10665 PF13360 PQQ-like domain HPY12_10670 PF09976 Tetratricopeptide repeat-like domain HPY12_10675 PF13393 Histidyl-tRNA synthetase HPY12_10675 PF03129 Anticodon binding domain HPY12_10680 PF04551 GcpE protein HPY12_10685 PF13464 Domain of unknown function (DUF4115) HPY12_10690 PF04055 Radical SAM superfamily HPY12_10695 PF00334 Nucleoside diphosphate kinase HPY12_10700 PF00883 Cytosol aminopeptidase family, catalytic domain HPY12_10700 PF12404 Peptidase HPY12_10705 PF04384 Iron-sulphur cluster assembly HPY12_10710 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY12_10715 PF00012 Hsp70 protein HPY12_10720 PF07743 HSCB C-terminal oligomerisation domain HPY12_10720 PF00226 DnaJ domain HPY12_10725 PF01521 Iron-sulphur cluster biosynthesis HPY12_10730 PF01592 NifU-like N terminal domain HPY12_10735 PF00266 Aminotransferase class-V HPY12_10740 PF02082 Transcriptional regulator HPY12_10745 PF00588 SpoU rRNA Methylase family HPY12_10750 PF00459 Inositol monophosphatase family HPY12_10755 PF02355 Protein export membrane protein HPY12_10755 PF07549 SecD/SecF GG Motif HPY12_10760 PF07549 SecD/SecF GG Motif HPY12_10760 PF13721 SecD export protein N-terminal TM region HPY12_10760 PF02355 Protein export membrane protein HPY12_10765 PF02699 Preprotein translocase subunit HPY12_10770 PF01702 Queuine tRNA-ribosyltransferase HPY12_10775 PF02547 Queuosine biosynthesis protein HPY12_10780 PF00571 CBS domain HPY12_10785 PF00463 Isocitrate lyase family HPY12_10790 PF01274 Malate synthase HPY12_10795 PF03466 LysR substrate binding domain HPY12_10795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_10800 PF10417 C-terminal domain of 1-Cys peroxiredoxin HPY12_10800 PF00578 AhpC/TSA family HPY12_10805 PF03932 CutC family HPY12_10810 PF03976 Polyphosphate kinase 2 (PPK2) HPY12_10815 PF01895 PhoU domain HPY12_10820 PF00005 ABC transporter HPY12_10825 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_10830 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_10835 PF17941 Polyphosphate kinase C-terminal domain 1 HPY12_10835 PF13090 Polyphosphate kinase C-terminal domain 2 HPY12_10835 PF02503 Polyphosphate kinase middle domain HPY12_10835 PF13089 Polyphosphate kinase N-terminal domain HPY12_10840 PF02541 Ppx/GppA phosphatase family HPY12_10845 PF12849 PBP superfamily domain HPY12_10850 PF00512 His Kinase A (phospho-acceptor) domain HPY12_10850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_10850 PF00989 PAS fold HPY12_10850 PF11808 Phosphate regulon sensor protein PhoR HPY12_10855 PF00072 Response regulator receiver domain HPY12_10855 PF00486 Transcriptional regulatory protein, C terminal HPY12_10860 PF04381 Putative exonuclease, RdgC HPY12_10870 PF00037 4Fe-4S binding domain HPY12_10875 PF00881 Nitroreductase family HPY12_10910 PF02861 Clp amino terminal domain, pathogenicity island component HPY12_10910 PF00004 ATPase family associated with various cellular activities (AAA) HPY12_10910 PF07724 AAA domain (Cdc48 subfamily) HPY12_10910 PF17871 AAA lid domain HPY12_10910 PF10431 C-terminal, D2-small domain, of ClpB protein HPY12_10920 PF00849 RNA pseudouridylate synthase HPY12_10920 PF01479 S4 domain HPY12_10925 PF13525 Outer membrane lipoprotein HPY12_10930 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY12_10935 PF01817 Chorismate mutase type II HPY12_10935 PF00800 Prephenate dehydratase HPY12_10940 PF13416 Bacterial extracellular solute-binding protein HPY12_10945 PF00990 Diguanylate cyclase, GGDEF domain HPY12_10945 PF00563 EAL domain HPY12_10950 PF01931 Protein of unknown function DUF84 HPY12_10955 PF01371 Trp repressor protein HPY12_10960 PF01464 Transglycosylase SLT domain HPY12_10960 PF14718 Soluble lytic murein transglycosylase L domain HPY12_10965 PF00005 ABC transporter HPY12_10965 PF12848 ABC transporter HPY12_10970 PF07238 PilZ domain HPY12_10975 PF02153 Prephenate dehydrogenase HPY12_10975 PF01817 Chorismate mutase type II HPY12_10980 PF00793 DAHP synthetase I family HPY12_10985 PF06580 Histidine kinase HPY12_10985 PF07694 5TMR of 5TMR-LYT HPY12_10990 PF00072 Response regulator receiver domain HPY12_10990 PF04397 LytTr DNA-binding domain HPY12_11000 PF03702 Anhydro-N-acetylmuramic acid kinase HPY12_11005 PF13580 SIS domain HPY12_11020 PF02554 Carbon starvation protein CstA HPY12_11025 PF01797 Transposase IS200 like HPY12_11030 PF02401 LytB protein HPY12_11035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY12_11040 PF01252 Signal peptidase (SPase) II HPY12_11045 PF00133 tRNA synthetases class I (I, L, M and V) HPY12_11045 PF06827 Zinc finger found in FPG and IleRS HPY12_11045 PF08264 Anticodon-binding domain of tRNA HPY12_11050 PF01687 Riboflavin kinase HPY12_11050 PF06574 FAD synthetase HPY12_11055 PF03023 Lipid II flippase MurJ HPY12_11060 PF01649 Ribosomal protein S20 HPY12_11065 PF01022 Bacterial regulatory protein, arsR family HPY12_11070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_11070 PF03466 LysR substrate binding domain HPY12_11075 PF02690 Na+/Pi-cotransporter HPY12_11080 PF00303 Thymidylate synthase HPY12_11085 PF01790 Prolipoprotein diacylglyceryl transferase HPY12_11090 PF01925 Sulfite exporter TauE/SafE HPY12_11095 PF00391 PEP-utilising enzyme, mobile domain HPY12_11095 PF05524 PEP-utilising enzyme, N-terminal HPY12_11095 PF01590 GAF domain HPY12_11095 PF02896 PEP-utilising enzyme, TIM barrel domain HPY12_11100 PF00293 NUDIX domain HPY12_11105 PF02976 DNA mismatch repair enzyme MutH HPY12_11110 PF00248 Aldo/keto reductase family HPY12_11120 PF00072 Response regulator receiver domain HPY12_11120 PF02954 Bacterial regulatory protein, Fis family HPY12_11120 PF00158 Sigma-54 interaction domain HPY12_11125 PF00152 tRNA synthetases class II (D, K and N) HPY12_11125 PF01336 OB-fold nucleic acid binding domain HPY12_11135 PF05525 Branched-chain amino acid transport protein HPY12_11140 PF05175 Methyltransferase small domain HPY12_11145 PF00270 DEAD/DEAH box helicase HPY12_11145 PF00271 Helicase conserved C-terminal domain HPY12_11150 PF03144 Elongation factor Tu domain 2 HPY12_11150 PF00009 Elongation factor Tu GTP binding domain HPY12_11150 PF16658 Class II release factor RF3, C-terminal domain HPY12_11155 PF00563 EAL domain HPY12_11155 PF00990 Diguanylate cyclase, GGDEF domain HPY12_11155 PF03707 Bacterial signalling protein N terminal repeat HPY12_11170 PF13508 Acetyltransferase (GNAT) domain HPY12_11175 PF02036 SCP-2 sterol transfer family HPY12_11180 PF00563 EAL domain HPY12_11180 PF03707 Bacterial signalling protein N terminal repeat HPY12_11180 PF00990 Diguanylate cyclase, GGDEF domain HPY12_11185 PF01136 Peptidase family U32 HPY12_11190 PF01136 Peptidase family U32 HPY12_11205 PF13181 Tetratricopeptide repeat HPY12_11205 PF07719 Tetratricopeptide repeat HPY12_11210 PF03725 3' exoribonuclease family, domain 2 HPY12_11210 PF00575 S1 RNA binding domain HPY12_11210 PF00013 KH domain HPY12_11210 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HPY12_11210 PF01138 3' exoribonuclease family, domain 1 HPY12_11215 PF00312 Ribosomal protein S15 HPY12_11220 PF01509 TruB family pseudouridylate synthase (N terminal domain) HPY12_11220 PF16198 tRNA pseudouridylate synthase B C-terminal domain HPY12_11220 PF09157 Pseudouridine synthase II TruB, C-terminal HPY12_11225 PF02033 Ribosome-binding factor A HPY12_11230 PF08364 Bacterial translation initiation factor IF-2 associated region HPY12_11230 PF11987 Translation-initiation factor 2 HPY12_11230 PF00009 Elongation factor Tu GTP binding domain HPY12_11230 PF04760 Translation initiation factor IF-2, N-terminal region HPY12_11235 PF13184 NusA-like KH domain HPY12_11235 PF00575 S1 RNA binding domain HPY12_11235 PF08529 NusA N-terminal domain HPY12_11240 PF17384 RimP C-terminal SH3 domain HPY12_11240 PF02576 RimP N-terminal domain HPY12_11255 PF03840 Preprotein translocase SecG subunit HPY12_11260 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY12_11260 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY12_11260 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY12_11260 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY12_11265 PF00809 Pterin binding enzyme HPY12_11270 PF01434 Peptidase family M41 HPY12_11270 PF06480 FtsH Extracellular HPY12_11270 PF17862 AAA+ lid domain HPY12_11270 PF00004 ATPase family associated with various cellular activities (AAA) HPY12_11275 PF01728 FtsJ-like methyltransferase HPY12_11280 PF01985 CRS1 / YhbY (CRM) domain HPY12_11285 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY12_11285 PF03449 Transcription elongation factor, N-terminal HPY12_11290 PF13609 Gram-negative porin HPY12_11295 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HPY12_11300 PF01797 Transposase IS200 like HPY12_11305 PF01479 S4 domain HPY12_11305 PF00579 tRNA synthetases class I (W and Y) HPY12_11310 PF04225 Opacity-associated protein A LysM-like domain HPY12_11310 PF01551 Peptidase family M23 HPY12_11315 PF00873 AcrB/AcrD/AcrF family HPY12_11325 PF01521 Iron-sulphur cluster biosynthesis HPY12_11330 PF00202 Aminotransferase class-III HPY12_11335 PF01594 AI-2E family transporter HPY12_11340 PF05175 Methyltransferase small domain HPY12_11340 PF08468 Methyltransferase small domain N-terminal HPY12_11345 PF00512 His Kinase A (phospho-acceptor) domain HPY12_11345 PF09308 LuxQ, periplasmic HPY12_11345 PF00072 Response regulator receiver domain HPY12_11345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_11350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY12_11355 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_11360 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_11360 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY12_11365 PF00005 ABC transporter HPY12_11365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY12_11370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY12_11370 PF00005 ABC transporter HPY12_11380 PF01869 BadF/BadG/BcrA/BcrD ATPase family HPY12_11385 PF02838 Glycosyl hydrolase family 20, domain 2 HPY12_11385 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY12_11390 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain HPY12_11390 PF06165 Glycosyltransferase family 36 HPY12_11395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY12_11395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY12_11395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY12_11395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY12_11400 PF08402 TOBE domain HPY12_11400 PF00005 ABC transporter HPY12_11410 PF13416 Bacterial extracellular solute-binding protein HPY12_11415 PF00909 Ammonium Transporter Family HPY12_11420 PF00543 Nitrogen regulatory protein P-II HPY12_11425 PF06062 Uncharacterised protein family (UPF0231) HPY12_11430 PF11791 Aconitate B N-terminal domain HPY12_11430 PF00330 Aconitase family (aconitate hydratase) HPY12_11430 PF06434 Aconitate hydratase 2 N-terminus HPY12_11435 PF01734 Patatin-like phospholipase HPY12_11440 PF14814 Bifunctional transglycosylase second domain HPY12_11440 PF00905 Penicillin binding protein transpeptidase domain HPY12_11440 PF00912 Transglycosylase HPY12_11445 PF00270 DEAD/DEAH box helicase HPY12_11445 PF04408 Helicase associated domain (HA2) HPY12_11445 PF00271 Helicase conserved C-terminal domain HPY12_11445 PF08482 ATP-dependent helicase C-terminal HPY12_11455 PF17746 SfsA N-terminal OB domain HPY12_11455 PF03749 Sugar fermentation stimulation protein RE domain HPY12_11460 PF01258 Prokaryotic dksA/traR C4-type zinc finger HPY12_11465 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY12_11470 PF01743 Poly A polymerase head domain HPY12_11470 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY12_11470 PF12626 Polymerase A arginine-rich C-terminus HPY12_11475 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY12_11480 PF02548 Ketopantoate hydroxymethyltransferase HPY12_11485 PF02569 Pantoate-beta-alanine ligase HPY12_11490 PF01061 ABC-2 type transporter HPY12_11495 PF00005 ABC transporter HPY12_11500 PF00916 Sulfate permease family HPY12_11500 PF01740 STAS domain HPY12_11505 PF00484 Carbonic anhydrase HPY12_11510 PF00156 Phosphoribosyl transferase domain HPY12_11515 PF00440 Bacterial regulatory proteins, tetR family HPY12_11520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY12_11525 PF04348 LppC putative lipoprotein HPY12_11530 PF02021 Uncharacterised protein family UPF0102 HPY12_11535 PF13580 SIS domain HPY12_11540 PF04972 BON domain HPY12_11545 PF04386 Stringent starvation protein B HPY12_11550 PF02798 Glutathione S-transferase, N-terminal domain HPY12_11550 PF00043 Glutathione S-transferase, C-terminal domain HPY12_11555 PF02167 Cytochrome C1 family HPY12_11560 PF00033 Cytochrome b/b6/petB HPY12_11560 PF00032 Cytochrome b(C-terminal)/b6/petD HPY12_11565 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HPY12_11565 PF00355 Rieske [2Fe-2S] domain HPY12_11570 PF00380 Ribosomal protein S9/S16 HPY12_11575 PF00572 Ribosomal protein L13 HPY12_11580 PF03969 AFG1-like ATPase HPY12_11590 PF00595 PDZ domain HPY12_11595 PF13180 PDZ domain HPY12_11600 PF01245 Ribosomal protein L19 HPY12_11605 PF01746 tRNA (Guanine-1)-methyltransferase HPY12_11610 PF05239 PRC-barrel domain HPY12_11610 PF01782 RimM N-terminal domain HPY12_11615 PF00886 Ribosomal protein S16 HPY12_11620 PF02978 Signal peptide binding domain HPY12_11620 PF00448 SRP54-type protein, GTPase domain HPY12_11620 PF02881 SRP54-type protein, helical bundle domain HPY12_11625 PF01578 Cytochrome C assembly protein HPY12_11630 PF03471 Transporter associated domain HPY12_11630 PF00571 CBS domain HPY12_11630 PF01595 Cyclin M transmembrane N-terminal domain HPY12_11635 PF02664 S-Ribosylhomocysteinase (LuxS) HPY12_11640 PF04262 Glutamate-cysteine ligase HPY12_11645 PF00675 Insulinase (Peptidase family M16) HPY12_11645 PF05193 Peptidase M16 inactive domain HPY12_11650 PF09335 SNARE associated Golgi protein HPY12_11660 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HPY12_11665 PF02436 Conserved carboxylase domain HPY12_11665 PF00682 HMGL-like HPY12_11665 PF00364 Biotin-requiring enzyme HPY12_11670 PF04277 Oxaloacetate decarboxylase, gamma chain HPY12_11715 PF02599 Global regulator protein family HPY12_11720 PF13840 ACT domain HPY12_11720 PF01842 ACT domain HPY12_11720 PF00696 Amino acid kinase family HPY12_11725 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY12_11725 PF01411 tRNA synthetases class II (A) HPY12_11725 PF02272 DHHA1 domain HPY12_11730 PF02631 RecX family HPY12_11735 PF00154 recA bacterial DNA recombination protein HPY12_11740 PF02464 Competence-damaged protein HPY12_11745 PF12857 TOBE-like domain HPY12_11745 PF00005 ABC transporter HPY12_11750 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_11755 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_11765 PF00291 Pyridoxal-phosphate dependent enzyme HPY12_11775 PF00140 Sigma-70 factor, region 1.2 HPY12_11775 PF04542 Sigma-70 region 2 HPY12_11775 PF04539 Sigma-70 region 3 HPY12_11775 PF04545 Sigma-70, region 4 HPY12_11780 PF01551 Peptidase family M23 HPY12_11780 PF01476 LysM domain HPY12_11790 PF01975 Survival protein SurE HPY12_11795 PF01142 tRNA pseudouridine synthase D (TruD) HPY12_11800 PF02542 YgbB family HPY12_11805 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HPY12_11810 PF04977 Septum formation initiator HPY12_11815 PF02673 Bacitracin resistance protein BacA HPY12_11820 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY12_11825 PF02152 Dihydroneopterin aldolase HPY12_11830 PF02660 Glycerol-3-phosphate acyltransferase HPY12_11835 PF00561 alpha/beta hydrolase fold HPY12_11840 PF00814 Glycoprotease family HPY12_11845 PF01165 Ribosomal protein S21 HPY12_11850 PF09424 Yqey-like protein HPY12_11855 PF01807 CHC2 zinc finger HPY12_11855 PF08275 DNA primase catalytic core, N-terminal domain HPY12_11855 PF08278 DNA primase DnaG DnaB-binding HPY12_11855 PF10410 DnaB-helicase binding domain of primase HPY12_11860 PF00140 Sigma-70 factor, region 1.2 HPY12_11860 PF03979 Sigma-70 factor, region 1.1 HPY12_11860 PF04546 Sigma-70, non-essential region HPY12_11860 PF04545 Sigma-70, region 4 HPY12_11860 PF04542 Sigma-70 region 2 HPY12_11860 PF04539 Sigma-70 region 3 HPY12_11875 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY12_11880 PF01380 SIS domain HPY12_11885 PF00455 DeoR C terminal sensor domain HPY12_11885 PF08220 DeoR-like helix-turn-helix domain HPY12_11890 PF00224 Pyruvate kinase, barrel domain HPY12_11890 PF02887 Pyruvate kinase, alpha/beta domain HPY12_11895 PF04402 Protein of unknown function (DUF541) HPY12_11900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_11900 PF03466 LysR substrate binding domain HPY12_11905 PF01810 LysE type translocator HPY12_11910 PF05552 Conserved TM helix HPY12_11910 PF00924 Mechanosensitive ion channel HPY12_11915 PF01116 Fructose-bisphosphate aldolase class-II HPY12_11925 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY12_11925 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY12_11930 PF07715 TonB-dependent Receptor Plug Domain HPY12_11930 PF00593 TonB dependent receptor HPY12_11935 PF03466 LysR substrate binding domain HPY12_11935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_11940 PF02779 Transketolase, pyrimidine binding domain HPY12_11940 PF02780 Transketolase, C-terminal domain HPY12_11940 PF00456 Transketolase, thiamine diphosphate binding domain HPY12_11945 PF02772 S-adenosylmethionine synthetase, central domain HPY12_11945 PF00438 S-adenosylmethionine synthetase, N-terminal domain HPY12_11945 PF02773 S-adenosylmethionine synthetase, C-terminal domain HPY12_11950 PF17283 SprT-like zinc ribbon domain HPY12_11950 PF10263 SprT-like family HPY12_11955 PF04231 Endonuclease I HPY12_11960 PF04452 RNA methyltransferase HPY12_11965 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HPY12_11965 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HPY12_11970 PF02622 Uncharacterized ACR, COG1678 HPY12_11975 PF03652 Holliday junction resolvase HPY12_11980 PF01479 S4 domain HPY12_11980 PF00579 tRNA synthetases class I (W and Y) HPY12_11990 PF00437 Type II/IV secretion system protein HPY12_11995 PF00437 Type II/IV secretion system protein HPY12_12000 PF01168 Alanine racemase, N-terminal domain HPY12_12005 PF14748 Pyrroline-5-carboxylate reductase dimerisation HPY12_12005 PF03807 NADP oxidoreductase coenzyme F420-dependent HPY12_12010 PF02325 YGGT family HPY12_12015 PF02594 Uncharacterised ACR, YggU family COG1872 HPY12_12025 PF01725 Ham1 family HPY12_12030 PF04055 Radical SAM superfamily HPY12_12030 PF06969 HemN C-terminal domain HPY12_12035 PF04960 Glutaminase HPY12_12040 PF02390 Putative methyltransferase HPY12_12045 PF14815 NUDIX domain HPY12_12045 PF00633 Helix-hairpin-helix motif HPY12_12045 PF10576 Iron-sulfur binding domain of endonuclease III HPY12_12045 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY12_12050 PF04362 Bacterial Fe(2+) trafficking HPY12_12055 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HPY12_12055 PF01464 Transglycosylase SLT domain HPY12_12080 PF00672 HAMP domain HPY12_12080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_12080 PF12729 Four helix bundle sensory module for signal transduction HPY12_12110 PF00226 DnaJ domain HPY12_12110 PF05099 Tellurite resistance protein TerB HPY12_12115 PF04453 LPS transport system D HPY12_12115 PF03968 OstA-like protein HPY12_12120 PF09312 SurA N-terminal domain HPY12_12125 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HPY12_12130 PF00398 Ribosomal RNA adenine dimethylase HPY12_12135 PF04379 ApaG domain HPY12_12140 PF00149 Calcineurin-like phosphoesterase HPY12_12145 PF00186 Dihydrofolate reductase HPY12_12150 PF12821 Threonine/Serine exporter, ThrE HPY12_12155 PF06738 Putative threonine/serine exporter HPY12_12160 PF01018 GTP1/OBG HPY12_12160 PF01926 50S ribosome-binding GTPase HPY12_12165 PF01016 Ribosomal L27 protein HPY12_12170 PF00829 Ribosomal prokaryotic L21 protein HPY12_12175 PF00348 Polyprenyl synthetase HPY12_12180 PF13520 Amino acid permease HPY12_12185 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HPY12_12185 PF00056 lactate/malate dehydrogenase, NAD binding domain HPY12_12190 PF01316 Arginine repressor, DNA binding domain HPY12_12190 PF02863 Arginine repressor, C-terminal domain HPY12_12195 PF16868 NMT1-like family HPY12_12205 PF00582 Universal stress protein family HPY12_12220 PF06877 Regulator of ribonuclease activity B HPY12_12230 PF01523 Putative modulator of DNA gyrase HPY12_12235 PF00795 Carbon-nitrogen hydrolase HPY12_12240 PF13502 AsmA-like C-terminal region HPY12_12240 PF13116 Protein of unknown function HPY12_12245 PF10150 Ribonuclease E/G family HPY12_12245 PF00575 S1 RNA binding domain HPY12_12250 PF02545 Maf-like protein HPY12_12255 PF04093 rod shape-determining protein MreD HPY12_12260 PF04085 rod shape-determining protein MreC HPY12_12295 PF00114 Pilin (bacterial filament) HPY12_12295 PF07963 Prokaryotic N-terminal methylation motif HPY12_12300 PF00114 Pilin (bacterial filament) HPY12_12300 PF07963 Prokaryotic N-terminal methylation motif HPY12_12310 PF00482 Type II secretion system (T2SS), protein F HPY12_12325 PF13401 AAA domain HPY12_12325 PF01471 Putative peptidoglycan binding domain HPY12_12330 PF00263 Bacterial type II and III secretion system protein HPY12_12330 PF03958 Bacterial type II/III secretion system short domain HPY12_12330 PF11741 AMIN domain HPY12_12330 PF07660 Secretin and TonB N terminus short domain HPY12_12350 PF00990 Diguanylate cyclase, GGDEF domain HPY12_12350 PF00563 EAL domain HPY12_12350 PF17157 Gammaproteobacterial periplasmic sensor domain HPY12_12355 PF00436 Single-strand binding protein family HPY12_12360 PF00196 Bacterial regulatory proteins, luxR family HPY12_12365 PF00483 Nucleotidyl transferase HPY12_12370 PF00005 ABC transporter HPY12_12370 PF17760 UvrA interaction domain HPY12_12370 PF17755 UvrA DNA-binding domain HPY12_12380 PF00266 Aminotransferase class-V HPY12_12385 PF01842 ACT domain HPY12_12385 PF00696 Amino acid kinase family HPY12_12390 PF02965 Vitamin B12 dependent methionine synthase, activation domain HPY12_12390 PF02607 B12 binding domain HPY12_12390 PF02310 B12 binding domain HPY12_12390 PF00809 Pterin binding enzyme HPY12_12390 PF02574 Homocysteine S-methyltransferase HPY12_12395 PF00999 Sodium/hydrogen exchanger family HPY12_12430 PF01507 Phosphoadenosine phosphosulfate reductase family HPY12_12435 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HPY12_12435 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HPY12_12440 PF00175 Oxidoreductase NAD-binding domain HPY12_12440 PF00258 Flavodoxin HPY12_12440 PF00667 FAD binding domain HPY12_12460 PF09583 Phage shock protein G (Phageshock_PspG) HPY12_12465 PF01207 Dihydrouridine synthase (Dus) HPY12_12470 PF01475 Ferric uptake regulator family HPY12_12480 PF12706 Beta-lactamase superfamily domain HPY12_12485 PF00342 Phosphoglucose isomerase HPY12_12500 PF01381 Helix-turn-helix HPY12_12520 PF18766 SWI2/SNF2 ATPase HPY12_12520 PF11867 Domain of unknown function (DUF3387) HPY12_12520 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HPY12_12535 PF02384 N-6 DNA Methylase HPY12_12535 PF12161 HsdM N-terminal domain HPY12_12565 PF01894 Uncharacterised protein family UPF0047 HPY12_12575 PF01168 Alanine racemase, N-terminal domain HPY12_12575 PF00842 Alanine racemase, C-terminal domain HPY12_12580 PF00772 DnaB-like helicase N terminal domain HPY12_12580 PF03796 DnaB-like helicase C terminal domain HPY12_12590 PF01281 Ribosomal protein L9, N-terminal domain HPY12_12590 PF03948 Ribosomal protein L9, C-terminal domain HPY12_12595 PF01084 Ribosomal protein S18 HPY12_12600 PF00436 Single-strand binding protein family HPY12_12605 PF01250 Ribosomal protein S6 HPY12_12610 PF00210 Ferritin-like domain HPY12_12615 PF04324 BFD-like [2Fe-2S] binding domain HPY12_12620 PF00009 Elongation factor Tu GTP binding domain HPY12_12620 PF03143 Elongation factor Tu C-terminal domain HPY12_12620 PF03144 Elongation factor Tu domain 2 HPY12_12625 PF00679 Elongation factor G C-terminus HPY12_12625 PF14492 Elongation Factor G, domain II HPY12_12625 PF00009 Elongation factor Tu GTP binding domain HPY12_12625 PF03144 Elongation factor Tu domain 2 HPY12_12625 PF03764 Elongation factor G, domain IV HPY12_12630 PF00177 Ribosomal protein S7p/S5e HPY12_12635 PF00164 Ribosomal protein S12/S23 HPY12_12645 PF02635 DsrE/DsrF-like family HPY12_12650 PF02635 DsrE/DsrF-like family HPY12_12655 PF08348 YheO-like PAS domain HPY12_12655 PF13309 HTH domain HPY12_12660 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY12_12660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY12_12670 PF04102 SlyX HPY12_12675 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HPY12_12680 PF01145 SPFH domain / Band 7 family HPY12_12685 PF12221 Bacterial membrane protein N terminal HPY12_12685 PF01145 SPFH domain / Band 7 family HPY12_12690 PF01926 50S ribosome-binding GTPase HPY12_12690 PF16360 GTP-binding GTPase Middle Region HPY12_12690 PF13167 GTP-binding GTPase N-terminal HPY12_12695 PF17209 Hfq protein HPY12_12705 PF08676 MutL C terminal dimerisation domain HPY12_12705 PF01119 DNA mismatch repair protein, C-terminal domain HPY12_12710 PF01520 N-acetylmuramoyl-L-alanine amidase HPY12_12715 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HPY12_12720 PF08331 Domain of unknown function (DUF1730) HPY12_12770 PF00929 Exonuclease HPY12_12775 PF03193 RsgA GTPase HPY12_12780 PF02666 Phosphatidylserine decarboxylase HPY12_12785 PF00939 Sodium:sulfate symporter transmembrane region HPY12_12795 PF01676 Metalloenzyme superfamily HPY12_12795 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HPY12_12800 PF01551 Peptidase family M23 HPY12_12810 PF00440 Bacterial regulatory proteins, tetR family HPY12_12810 PF08360 QacR-like protein, C-terminal region HPY12_12815 PF01208 Uroporphyrinogen decarboxylase (URO-D) HPY12_12820 PF00293 NUDIX domain HPY12_12820 PF09297 NADH pyrophosphatase zinc ribbon domain HPY12_12825 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HPY12_12830 PF04997 RNA polymerase Rpb1, domain 1 HPY12_12830 PF04998 RNA polymerase Rpb1, domain 5 HPY12_12830 PF05000 RNA polymerase Rpb1, domain 4 HPY12_12830 PF00623 RNA polymerase Rpb1, domain 2 HPY12_12830 PF04983 RNA polymerase Rpb1, domain 3 HPY12_12835 PF04560 RNA polymerase Rpb2, domain 7 HPY12_12835 PF04563 RNA polymerase beta subunit HPY12_12835 PF00562 RNA polymerase Rpb2, domain 6 HPY12_12835 PF04561 RNA polymerase Rpb2, domain 2 HPY12_12835 PF10385 RNA polymerase beta subunit external 1 domain HPY12_12835 PF04565 RNA polymerase Rpb2, domain 3 HPY12_12840 PF16320 Ribosomal protein L7/L12 dimerisation domain HPY12_12840 PF00542 Ribosomal protein L7/L12 C-terminal domain HPY12_12845 PF00466 Ribosomal protein L10 HPY12_12850 PF00687 Ribosomal protein L1p/L10e family HPY12_12855 PF03946 Ribosomal protein L11, N-terminal domain HPY12_12855 PF00298 Ribosomal protein L11, RNA binding domain HPY12_12860 PF00467 KOW motif HPY12_12860 PF02357 Transcription termination factor nusG HPY12_12865 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HPY12_12870 PF00009 Elongation factor Tu GTP binding domain HPY12_12870 PF03144 Elongation factor Tu domain 2 HPY12_12870 PF03143 Elongation factor Tu C-terminal domain HPY12_12895 PF00485 Phosphoribulokinase / Uridine kinase family HPY12_12900 PF02237 Biotin protein ligase C terminal domain HPY12_12900 PF08279 HTH domain HPY12_12900 PF03099 Biotin/lipoate A/B protein ligase family HPY12_12905 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HPY12_12905 PF01565 FAD binding domain HPY12_12915 PF13091 PLD-like domain HPY12_12980 PF00175 Oxidoreductase NAD-binding domain HPY12_12985 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY12_12985 PF00175 Oxidoreductase NAD-binding domain HPY12_12985 PF00970 Oxidoreductase FAD-binding domain HPY12_12990 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HPY12_13000 PF07498 Rho termination factor, N-terminal domain HPY12_13000 PF07497 Rho termination factor, RNA-binding domain HPY12_13000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY12_13005 PF00085 Thioredoxin HPY12_13010 PF00270 DEAD/DEAH box helicase HPY12_13010 PF00271 Helicase conserved C-terminal domain HPY12_13015 PF02541 Ppx/GppA phosphatase family HPY12_13020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_13020 PF00512 His Kinase A (phospho-acceptor) domain HPY12_13020 PF00989 PAS fold HPY12_13025 PF12832 MFS_1 like family HPY12_13040 PF00501 AMP-binding enzyme HPY12_13040 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY12_13040 PF13193 AMP-binding enzyme C-terminal domain HPY12_13045 PF01220 Dehydroquinase class II HPY12_13050 PF00364 Biotin-requiring enzyme HPY12_13065 PF01207 Dihydrouridine synthase (Dus) HPY12_13070 PF02954 Bacterial regulatory protein, Fis family HPY12_13085 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY12_13085 PF00356 Bacterial regulatory proteins, lacI family HPY12_13090 PF00920 Dehydratase family HPY12_13095 PF01202 Shikimate kinase HPY12_13100 PF02447 GntP family permease HPY12_13105 PF01081 KDPG and KHG aldolase HPY12_13110 PF00593 TonB dependent receptor HPY12_13110 PF07715 TonB-dependent Receptor Plug Domain HPY12_13125 PF17200 Single Cache domain 2 HPY12_13125 PF00672 HAMP domain HPY12_13125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_13130 PF01276 Orn/Lys/Arg decarboxylase, major domain HPY12_13130 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HPY12_13130 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HPY12_13135 PF13520 Amino acid permease HPY12_13140 PF00486 Transcriptional regulatory protein, C terminal HPY12_13140 PF18500 CadC C-terminal domain 1 HPY12_13145 PF13411 MerR HTH family regulatory protein HPY12_13155 PF01808 AICARFT/IMPCHase bienzyme HPY12_13155 PF02142 MGS-like domain HPY12_13160 PF02843 Phosphoribosylglycinamide synthetase, C domain HPY12_13160 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HPY12_13160 PF02844 Phosphoribosylglycinamide synthetase, N domain HPY12_13170 PF00216 Bacterial DNA-binding protein HPY12_13175 PF00571 CBS domain HPY12_13175 PF01595 Cyclin M transmembrane N-terminal domain HPY12_13180 PF00480 ROK family HPY12_13185 PF01238 Phosphomannose isomerase type I HPY12_13190 PF04222 Protein of unknown function (DUF416) HPY12_13195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY12_13200 PF03167 Uracil DNA glycosylase superfamily HPY12_13205 PF00924 Mechanosensitive ion channel HPY12_13210 PF10996 Beta-Casp domain HPY12_13210 PF00753 Metallo-beta-lactamase superfamily HPY12_13210 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HPY12_13215 PF02397 Bacterial sugar transferase HPY12_13220 PF01370 NAD dependent epimerase/dehydratase family HPY12_13225 PF02719 Polysaccharide biosynthesis protein HPY12_13240 PF01370 NAD dependent epimerase/dehydratase family HPY12_13245 PF16363 GDP-mannose 4,6 dehydratase HPY12_13255 PF00535 Glycosyl transferase family 2 HPY12_13260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY12_13265 PF03559 NDP-hexose 2,3-dehydratase HPY12_13270 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HPY12_13275 PF00501 AMP-binding enzyme HPY12_13275 PF13193 AMP-binding enzyme C-terminal domain HPY12_13280 PF00106 short chain dehydrogenase HPY12_13300 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY12_13300 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY12_13310 PF00483 Nucleotidyl transferase HPY12_13315 PF16363 GDP-mannose 4,6 dehydratase HPY12_13335 PF14524 Wzt C-terminal domain HPY12_13335 PF00005 ABC transporter HPY12_13345 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY12_13345 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY12_13345 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY12_13345 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY12_13350 PF00483 Nucleotidyl transferase HPY12_13350 PF01050 Mannose-6-phosphate isomerase HPY12_13355 PF01370 NAD dependent epimerase/dehydratase family HPY12_13360 PF00457 Glycosyl hydrolases family 11 HPY12_13360 PF01522 Polysaccharide deacetylase HPY12_13375 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY12_13385 PF04488 Glycosyltransferase sugar-binding region containing DXD motif HPY12_13390 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HPY12_13425 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY12_13430 PF00535 Glycosyl transferase family 2 HPY12_13435 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY12_13440 PF01467 Cytidylyltransferase-like HPY12_13445 PF06827 Zinc finger found in FPG and IleRS HPY12_13445 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HPY12_13445 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HPY12_13455 PF00471 Ribosomal protein L33 HPY12_13460 PF00830 Ribosomal L28 family HPY12_13465 PF04002 RadC-like JAB domain HPY12_13470 PF02743 Cache domain HPY12_13470 PF00672 HAMP domain HPY12_13470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_13475 PF04127 DNA / pantothenate metabolism flavoprotein HPY12_13475 PF02441 Flavoprotein HPY12_13485 PF00440 Bacterial regulatory proteins, tetR family HPY12_13490 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY12_13495 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY12_13500 PF00156 Phosphoribosyl transferase domain HPY12_13505 PF03725 3' exoribonuclease family, domain 2 HPY12_13505 PF01138 3' exoribonuclease family, domain 1 HPY12_13510 PF08340 Domain of unknown function (DUF1732) HPY12_13510 PF03755 YicC-like family, N-terminal region HPY12_13515 PF03350 Uncharacterized protein family, UPF0114 HPY12_13520 PF00367 phosphotransferase system, EIIB HPY12_13520 PF02378 Phosphotransferase system, EIIC HPY12_13525 PF13580 SIS domain HPY12_13530 PF01418 Helix-turn-helix domain, rpiR family HPY12_13530 PF01380 SIS domain HPY12_13535 PF01032 FecCD transport family HPY12_13540 PF01497 Periplasmic binding protein HPY12_13545 PF00005 ABC transporter HPY12_13550 PF00593 TonB dependent receptor HPY12_13550 PF07715 TonB-dependent Receptor Plug Domain HPY12_13555 PF00664 ABC transporter transmembrane region HPY12_13555 PF00005 ABC transporter HPY12_13570 PF00271 Helicase conserved C-terminal domain HPY12_13570 PF00270 DEAD/DEAH box helicase HPY12_13570 PF00570 HRDC domain HPY12_13570 PF16124 RecQ zinc-binding HPY12_13570 PF09382 RQC domain HPY12_13575 PF00892 EamA-like transporter family HPY12_13585 PF12833 Helix-turn-helix domain HPY12_13590 PF01810 LysE type translocator HPY12_13595 PF13361 UvrD-like helicase C-terminal domain HPY12_13595 PF00580 UvrD/REP helicase N-terminal domain HPY12_13600 PF01432 Peptidase family M3 HPY12_13605 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HPY12_13610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY12_13610 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY12_13620 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY12_13620 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_13630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY12_13635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY12_13635 PF00005 ABC transporter HPY12_13670 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY12_13675 PF13361 UvrD-like helicase C-terminal domain HPY12_13675 PF00580 UvrD/REP helicase N-terminal domain HPY12_13680 PF00440 Bacterial regulatory proteins, tetR family HPY12_13685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY12_13690 PF00873 AcrB/AcrD/AcrF family HPY12_13695 PF04380 Membrane fusogenic activity HPY12_13700 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HPY12_13700 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HPY12_13705 PF03466 LysR substrate binding domain HPY12_13705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_13775 PF12724 Flavodoxin domain HPY12_13780 PF02386 Cation transport protein HPY12_13785 PF09186 Domain of unknown function (DUF1949) HPY12_13785 PF01205 Uncharacterized protein family UPF0029 HPY12_13790 PF00378 Enoyl-CoA hydratase/isomerase HPY12_13790 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY12_13790 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY12_13795 PF00108 Thiolase, N-terminal domain HPY12_13795 PF02803 Thiolase, C-terminal domain HPY12_13800 PF03466 LysR substrate binding domain HPY12_13800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_13805 PF07690 Major Facilitator Superfamily HPY12_13810 PF00132 Bacterial transferase hexapeptide (six repeats) HPY12_13810 PF12804 MobA-like NTP transferase domain HPY12_13815 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HPY12_13815 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HPY12_13820 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY12_13820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY12_13825 PF00231 ATP synthase HPY12_13830 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY12_13830 PF00306 ATP synthase alpha/beta chain, C terminal domain HPY12_13830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY12_13835 PF00213 ATP synthase delta (OSCP) subunit HPY12_13840 PF00430 ATP synthase B/B' CF(0) HPY12_13845 PF00137 ATP synthase subunit C HPY12_13850 PF00119 ATP synthase A chain HPY12_13855 PF03899 ATP synthase I chain HPY12_13860 PF02195 ParB-like nuclease domain HPY12_13860 PF17762 HTH domain found in ParB protein HPY12_13865 PF13614 AAA domain HPY12_13870 PF02527 rRNA small subunit methyltransferase G HPY12_13875 PF01134 Glucose inhibited division protein A HPY12_13875 PF13932 GidA associated domain HPY12_13880 PF00258 Flavodoxin HPY12_13885 PF10396 GTP-binding protein TrmE N-terminus HPY12_13885 PF12631 MnmE helical domain HPY12_13885 PF01926 50S ribosome-binding GTPase HPY12_13890 PF02096 60Kd inner membrane protein HPY12_13890 PF14849 YidC periplasmic domain HPY12_13895 PF01809 Putative membrane protein insertion efficiency factor HPY12_13900 PF00825 Ribonuclease P HPY12_13905 PF00468 Ribosomal protein L34 HPY12_13910 PF00005 ABC transporter HPY12_13915 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_13920 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY12_13925 PF08775 ParB family HPY12_13925 PF02195 ParB-like nuclease domain HPY12_13930 PF13614 AAA domain HPY12_13930 PF18607 ParA helix turn helix domain HPY12_13955 PF01709 Transcriptional regulator HPY12_13960 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HPY12_13960 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY12_13965 PF00672 HAMP domain HPY12_13965 PF17200 Single Cache domain 2 HPY12_13965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_13970 PF10928 Protein of unknown function (DUF2810) HPY12_13975 PF17874 MalT-like TPR region HPY12_13975 PF00196 Bacterial regulatory proteins, luxR family HPY12_13980 PF00343 Carbohydrate phosphorylase HPY12_13985 PF02446 4-alpha-glucanotransferase HPY12_13990 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY12_13990 PF00128 Alpha amylase, catalytic domain HPY12_13990 PF02806 Alpha amylase, C-terminal all-beta domain HPY12_13995 PF05638 Type VI secretion system effector, Hcp HPY12_14000 PF04717 Type VI secretion system, phage-baseplate injector HPY12_14000 PF16671 Actin cross-linking domain HPY12_14035 PF00939 Sodium:sulfate symporter transmembrane region HPY12_14040 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY12_14045 PF00704 Glycosyl hydrolases family 18 HPY12_14045 PF08329 Chitinase A, N-terminal domain HPY12_14060 PF02743 Cache domain HPY12_14060 PF00672 HAMP domain HPY12_14060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_14080 PF01569 PAP2 superfamily HPY12_14085 PF00375 Sodium:dicarboxylate symporter family HPY12_14095 PF02630 SCO1/SenC HPY12_14110 PF03616 Sodium/glutamate symporter HPY12_14115 PF07238 PilZ domain HPY12_14115 PF12945 Flagellar protein YcgR HPY12_14130 PF00529 HlyD membrane-fusion protein of T1SS HPY12_14130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY12_14135 PF11742 Protein of unknown function (DUF3302) HPY12_14140 PF00990 Diguanylate cyclase, GGDEF domain HPY12_14155 PF01048 Phosphorylase superfamily HPY12_14160 PF08349 Protein of unknown function (DUF1722) HPY12_14165 PF13411 MerR HTH family regulatory protein HPY12_14170 PF03441 FAD binding domain of DNA photolyase HPY12_14170 PF00875 DNA photolyase HPY12_14175 PF17969 L,D-transpeptidase C-terminal domain HPY12_14175 PF01476 LysM domain HPY12_14175 PF03734 L,D-transpeptidase catalytic domain HPY12_14185 PF00271 Helicase conserved C-terminal domain HPY12_14185 PF00270 DEAD/DEAH box helicase HPY12_14190 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HPY12_14190 PF00326 Prolyl oligopeptidase family HPY12_14195 PF00593 TonB dependent receptor HPY12_14195 PF07715 TonB-dependent Receptor Plug Domain HPY12_14215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_14215 PF12729 Four helix bundle sensory module for signal transduction HPY12_14215 PF00672 HAMP domain HPY12_14220 PF12849 PBP superfamily domain HPY12_14225 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_14230 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_14235 PF00005 ABC transporter HPY12_14240 PF03707 Bacterial signalling protein N terminal repeat HPY12_14240 PF00563 EAL domain HPY12_14240 PF00990 Diguanylate cyclase, GGDEF domain HPY12_14260 PF01740 STAS domain HPY12_14260 PF00916 Sulfate permease family HPY12_14270 PF01551 Peptidase family M23 HPY12_14270 PF08525 Opacity-associated protein A N-terminal motif HPY12_14270 PF01476 LysM domain HPY12_14275 PF03707 Bacterial signalling protein N terminal repeat HPY12_14275 PF13188 PAS domain HPY12_14275 PF00990 Diguanylate cyclase, GGDEF domain HPY12_14275 PF00563 EAL domain HPY12_14280 PF03466 LysR substrate binding domain HPY12_14280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_14285 PF07690 Major Facilitator Superfamily HPY12_14290 PF09278 MerR, DNA binding HPY12_14290 PF00376 MerR family regulatory protein HPY12_14305 PF00375 Sodium:dicarboxylate symporter family HPY12_14315 PF02001 Protein of unknown function DUF134 HPY12_14340 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY12_14340 PF01447 Thermolysin metallopeptidase, catalytic domain HPY12_14340 PF01483 Proprotein convertase P-domain HPY12_14340 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY12_14350 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HPY12_14350 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HPY12_14355 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY12_14355 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HPY12_14360 PF00581 Rhodanese-like domain HPY12_14365 PF00563 EAL domain HPY12_14365 PF00196 Bacterial regulatory proteins, luxR family HPY12_14370 PF13419 Haloacid dehalogenase-like hydrolase HPY12_14375 PF01740 STAS domain HPY12_14375 PF00916 Sulfate permease family HPY12_14380 PF00849 RNA pseudouridylate synthase HPY12_14440 PF00004 ATPase family associated with various cellular activities (AAA) HPY12_14440 PF17871 AAA lid domain HPY12_14440 PF07724 AAA domain (Cdc48 subfamily) HPY12_14440 PF10431 C-terminal, D2-small domain, of ClpB protein HPY12_14470 PF04717 Type VI secretion system, phage-baseplate injector HPY12_14470 PF16671 Actin cross-linking domain HPY12_14485 PF05025 RbsD / FucU transport protein family HPY12_14490 PF00005 ABC transporter HPY12_14495 PF02653 Branched-chain amino acid transport system / permease component HPY12_14500 PF13407 Periplasmic binding protein domain HPY12_14505 PF00294 pfkB family carbohydrate kinase HPY12_14510 PF00356 Bacterial regulatory proteins, lacI family HPY12_14515 PF04973 Nicotinamide mononucleotide transporter HPY12_14520 PF01048 Phosphorylase superfamily HPY12_14530 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY12_14535 PF07690 Major Facilitator Superfamily HPY12_14550 PF02743 Cache domain HPY12_14550 PF00512 His Kinase A (phospho-acceptor) domain HPY12_14550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_14555 PF02954 Bacterial regulatory protein, Fis family HPY12_14555 PF00072 Response regulator receiver domain HPY12_14555 PF00158 Sigma-54 interaction domain HPY12_14570 PF01266 FAD dependent oxidoreductase HPY12_14575 PF12561 ToxR activated gene A lipoprotein domain HPY12_14575 PF00041 Fibronectin type III domain HPY12_14580 PF01327 Polypeptide deformylase HPY12_14585 PF03611 PTS system sugar-specific permease component HPY12_14595 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY12_14600 PF00356 Bacterial regulatory proteins, lacI family HPY12_14610 PF03334 Na+/H+ antiporter subunit HPY12_14615 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) HPY12_14635 PF00361 Proton-conducting membrane transporter HPY12_14635 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY12_14635 PF13244 Domain of unknown function (DUF4040) HPY12_14635 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter HPY12_14645 PF00582 Universal stress protein family HPY12_14650 PF03222 Tryptophan/tyrosine permease family HPY12_14655 PF01212 Beta-eliminating lyase HPY12_14670 PF12843 Putative quorum-sensing-regulated virulence factor HPY12_14680 PF00990 Diguanylate cyclase, GGDEF domain HPY12_14680 PF08448 PAS fold HPY12_14680 PF00563 EAL domain HPY12_14685 PF00313 'Cold-shock' DNA-binding domain HPY12_14700 PF07584 Aerotolerance regulator N-terminal HPY12_14700 PF13519 von Willebrand factor type A domain HPY12_14715 PF01882 Protein of unknown function DUF58 HPY12_14720 PF07726 ATPase family associated with various cellular activities (AAA) HPY12_14720 PF17863 AAA lid domain HPY12_14725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_14725 PF00672 HAMP domain HPY12_14725 PF02743 Cache domain HPY12_14740 PF01773 Na+ dependent nucleoside transporter N-terminus HPY12_14740 PF07662 Na+ dependent nucleoside transporter C-terminus HPY12_14740 PF07670 Nucleoside recognition HPY12_14745 PF07687 Peptidase dimerisation domain HPY12_14745 PF01546 Peptidase family M20/M25/M40 HPY12_14755 PF00158 Sigma-54 interaction domain HPY12_14755 PF01590 GAF domain HPY12_14760 PF00042 Globin HPY12_14760 PF00175 Oxidoreductase NAD-binding domain HPY12_14760 PF00970 Oxidoreductase FAD-binding domain HPY12_14765 PF00313 'Cold-shock' DNA-binding domain HPY12_14770 PF03889 Alternative ribosome-rescue factor A HPY12_14785 PF00072 Response regulator receiver domain HPY12_14795 PF01256 Carbohydrate kinase HPY12_14795 PF03853 YjeF-related protein N-terminus HPY12_14800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY12_14800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY12_14810 PF07885 Ion channel HPY12_14820 PF00478 IMP dehydrogenase / GMP reductase domain HPY12_14830 PF03466 LysR substrate binding domain HPY12_14830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_14835 PF17848 Acetyl-coA carboxylase zinc finger domain HPY12_14835 PF01039 Carboxyl transferase domain HPY12_14840 PF00270 DEAD/DEAH box helicase HPY12_14840 PF00271 Helicase conserved C-terminal domain HPY12_14845 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY12_14855 PF01467 Cytidylyltransferase-like HPY12_14865 PF00512 His Kinase A (phospho-acceptor) domain HPY12_14865 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY12_14865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_14875 PF03553 Na+/H+ antiporter family HPY12_14880 PF07690 Major Facilitator Superfamily HPY12_14890 PF00990 Diguanylate cyclase, GGDEF domain HPY12_14890 PF08448 PAS fold HPY12_14895 PF00657 GDSL-like Lipase/Acylhydrolase HPY12_14900 PF16458 Beta-prism lectin HPY12_14900 PF07968 Leukocidin/Hemolysin toxin family HPY12_14900 PF12563 Hemolytic toxin N terminal HPY12_14905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_14905 PF00672 HAMP domain HPY12_14905 PF12729 Four helix bundle sensory module for signal transduction HPY12_14910 PF00561 alpha/beta hydrolase fold HPY12_14915 PF03280 Proteobacterial lipase chaperone protein HPY12_14920 PF00801 PKD domain HPY12_14920 PF05547 Immune inhibitor A peptidase M6 HPY12_14940 PF01032 FecCD transport family HPY12_14945 PF01032 FecCD transport family HPY12_14950 PF00005 ABC transporter HPY12_14955 PF12833 Helix-turn-helix domain HPY12_14960 PF07715 TonB-dependent Receptor Plug Domain HPY12_14960 PF00593 TonB dependent receptor HPY12_14970 PF00871 Acetokinase family HPY12_14985 PF00512 His Kinase A (phospho-acceptor) domain HPY12_14985 PF00672 HAMP domain HPY12_14985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_14990 PF00072 Response regulator receiver domain HPY12_14990 PF00486 Transcriptional regulatory protein, C terminal HPY12_15000 PF01261 Xylose isomerase-like TIM barrel HPY12_15005 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY12_15015 PF00596 Class II Aldolase and Adducin N-terminal domain HPY12_15020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY12_15025 PF03611 PTS system sugar-specific permease component HPY12_15030 PF08220 DeoR-like helix-turn-helix domain HPY12_15030 PF00455 DeoR C terminal sensor domain HPY12_15045 PF00128 Alpha amylase, catalytic domain HPY12_15050 PF00132 Bacterial transferase hexapeptide (six repeats) HPY12_15065 PF00072 Response regulator receiver domain HPY12_15065 PF00486 Transcriptional regulatory protein, C terminal HPY12_15070 PF00512 His Kinase A (phospho-acceptor) domain HPY12_15070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_15070 PF00672 HAMP domain HPY12_15110 PF07690 Major Facilitator Superfamily HPY12_15115 PF02743 Cache domain HPY12_15115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_15115 PF00672 HAMP domain HPY12_15120 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY12_15125 PF07943 Penicillin-binding protein 5, C-terminal domain HPY12_15125 PF00768 D-alanyl-D-alanine carboxypeptidase HPY12_15140 PF00194 Eukaryotic-type carbonic anhydrase HPY12_15145 PF02347 Glycine cleavage system P-protein HPY12_15150 PF01597 Glycine cleavage H-protein HPY12_15155 PF00464 Serine hydroxymethyltransferase HPY12_15165 PF01571 Aminomethyltransferase folate-binding domain HPY12_15165 PF08669 Glycine cleavage T-protein C-terminal barrel domain HPY12_15170 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY12_15170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY12_15170 PF02824 TGS domain HPY12_15170 PF03129 Anticodon binding domain HPY12_15175 PF00707 Translation initiation factor IF-3, C-terminal domain HPY12_15175 PF05198 Translation initiation factor IF-3, N-terminal domain HPY12_15180 PF01632 Ribosomal protein L35 HPY12_15185 PF00453 Ribosomal protein L20 HPY12_15190 PF13495 Phage integrase, N-terminal SAM-like domain HPY12_15190 PF00589 Phage integrase family HPY12_15195 PF01965 DJ-1/PfpI family HPY12_15195 PF12833 Helix-turn-helix domain HPY12_15225 PF02567 Phenazine biosynthesis-like protein HPY12_15285 PF13673 Acetyltransferase (GNAT) domain HPY12_15315 PF01636 Phosphotransferase enzyme family HPY12_15320 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB HPY12_15325 PF01381 Helix-turn-helix HPY12_15395 PF00293 NUDIX domain HPY12_15400 PF00583 Acetyltransferase (GNAT) family HPY12_15405 PF08212 Lipocalin-like domain HPY12_15410 PF08212 Lipocalin-like domain HPY12_15420 PF13302 Acetyltransferase (GNAT) domain HPY12_15440 PF02567 Phenazine biosynthesis-like protein HPY12_15455 PF00583 Acetyltransferase (GNAT) family HPY12_15475 PF07859 alpha/beta hydrolase fold HPY12_15480 PF13302 Acetyltransferase (GNAT) domain HPY12_15520 PF13302 Acetyltransferase (GNAT) domain HPY12_15530 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HPY12_15535 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HPY12_15540 PF00561 alpha/beta hydrolase fold HPY12_15590 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB HPY12_15595 PF01381 Helix-turn-helix HPY12_15625 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HPY12_15640 PF17676 LD-carboxypeptidase C-terminal domain HPY12_15640 PF02016 LD-carboxypeptidase N-terminal domain HPY12_15670 PF01966 HD domain HPY12_15690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY12_15700 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HPY12_15760 PF01797 Transposase IS200 like HPY12_15815 PF01797 Transposase IS200 like HPY12_15875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY12_15895 PF13597 Anaerobic ribonucleoside-triphosphate reductase HPY12_15895 PF03477 ATP cone domain HPY12_15905 PF00155 Aminotransferase class I and II HPY12_15910 PF18030 RimK PreATP-grasp domain HPY12_15910 PF08443 RimK-like ATP-grasp domain HPY12_15915 PF02378 Phosphotransferase system, EIIC HPY12_15915 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY12_15920 PF00294 pfkB family carbohydrate kinase HPY12_15925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY12_15925 PF00381 PTS HPr component phosphorylation site HPY12_15930 PF00356 Bacterial regulatory proteins, lacI family HPY12_15930 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY12_15935 PF00149 Calcineurin-like phosphoesterase HPY12_15935 PF12320 Type 5 capsule protein repressor C-terminal domain HPY12_15940 PF13476 AAA domain HPY12_15945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_15945 PF00072 Response regulator receiver domain HPY12_15950 PF00155 Aminotransferase class I and II HPY12_15965 PF07683 Cobalamin synthesis protein cobW C-terminal domain HPY12_15965 PF02492 CobW/HypB/UreG, nucleotide-binding domain HPY12_15970 PF01926 50S ribosome-binding GTPase HPY12_15975 PF02705 K+ potassium transporter HPY12_15980 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HPY12_15980 PF10371 Domain of unknown function HPY12_15980 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HPY12_15980 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HPY12_15980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY12_15985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_15985 PF13493 Domain of unknown function (DUF4118) HPY12_15985 PF00512 His Kinase A (phospho-acceptor) domain HPY12_15985 PF02702 Osmosensitive K+ channel His kinase sensor domain HPY12_15990 PF00486 Transcriptional regulatory protein, C terminal HPY12_15990 PF00072 Response regulator receiver domain HPY12_15995 PF02416 mttA/Hcf106 family HPY12_16000 PF09335 SNARE associated Golgi protein HPY12_16010 PF10388 EAL-domain associated signalling protein domain HPY12_16010 PF00563 EAL domain HPY12_16020 PF01292 Prokaryotic cytochrome b561 HPY12_16025 PF04264 YceI-like domain HPY12_16030 PF01226 Formate/nitrite transporter HPY12_16035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_16035 PF03466 LysR substrate binding domain HPY12_16040 PF06496 Protein of unknown function (DUF1097) HPY12_16045 PF11398 Protein of unknown function (DUF2813) HPY12_16050 PF02872 5'-nucleotidase, C-terminal domain HPY12_16050 PF00149 Calcineurin-like phosphoesterase HPY12_16055 PF03741 Integral membrane protein TerC family HPY12_16065 PF08274 PhnA Zinc-Ribbon HPY12_16065 PF03831 PhnA domain HPY12_16095 PF00990 Diguanylate cyclase, GGDEF domain HPY12_16095 PF17151 Periplasmic sensor domain HPY12_16115 PF00990 Diguanylate cyclase, GGDEF domain HPY12_16115 PF05230 MASE2 domain HPY12_16130 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY12_16130 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY12_16130 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HPY12_16135 PF02233 NAD(P) transhydrogenase beta subunit HPY12_16145 PF00486 Transcriptional regulatory protein, C terminal HPY12_16145 PF00072 Response regulator receiver domain HPY12_16160 PF03701 Uncharacterised protein family (UPF0181) HPY12_16170 PF01797 Transposase IS200 like HPY12_16230 PF01253 Translation initiation factor SUI1 HPY12_16240 PF01820 D-ala D-ala ligase N-terminus HPY12_16240 PF07478 D-ala D-ala ligase C-terminus HPY12_16250 PF13380 CoA binding domain HPY12_16250 PF13607 Succinyl-CoA ligase like flavodoxin domain HPY12_16250 PF00583 Acetyltransferase (GNAT) family HPY12_16255 PF03466 LysR substrate binding domain HPY12_16255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_16260 PF07715 TonB-dependent Receptor Plug Domain HPY12_16260 PF00593 TonB dependent receptor HPY12_16265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY12_16265 PF12793 Sugar transport-related sRNA regulator N-term HPY12_16275 PF03061 Thioesterase superfamily HPY12_16295 PF02798 Glutathione S-transferase, N-terminal domain HPY12_16295 PF00043 Glutathione S-transferase, C-terminal domain HPY12_16310 PF12804 MobA-like NTP transferase domain HPY12_16310 PF03479 Plants and Prokaryotes Conserved (PCC) domain HPY12_16310 PF00132 Bacterial transferase hexapeptide (six repeats) HPY12_16315 PF00005 ABC transporter HPY12_16315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY12_16320 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_16320 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY12_16325 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_16330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY12_16355 PF00854 POT family HPY12_16365 PF00392 Bacterial regulatory proteins, gntR family HPY12_16365 PF07702 UTRA domain HPY12_16370 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_16375 PF00005 ABC transporter HPY12_16385 PF00266 Aminotransferase class-V HPY12_16395 PF13419 Haloacid dehalogenase-like hydrolase HPY12_16400 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY12_16400 PF14760 Rnk N-terminus HPY12_16405 PF13419 Haloacid dehalogenase-like hydrolase HPY12_16420 PF01741 Large-conductance mechanosensitive channel, MscL HPY12_16425 PF01268 Formate--tetrahydrofolate ligase HPY12_16430 PF01641 SelR domain HPY12_16430 PF01625 Peptide methionine sulfoxide reductase HPY12_16435 PF01227 GTP cyclohydrolase I HPY12_16440 PF00994 Probable molybdopterin binding domain HPY12_16440 PF03454 MoeA C-terminal region (domain IV) HPY12_16440 PF03453 MoeA N-terminal region (domain I and II) HPY12_16445 PF00899 ThiF family HPY12_16455 PF00581 Rhodanese-like domain HPY12_16465 PF00923 Transaldolase/Fructose-6-phosphate aldolase HPY12_16470 PF02779 Transketolase, pyrimidine binding domain HPY12_16470 PF00456 Transketolase, thiamine diphosphate binding domain HPY12_16470 PF02780 Transketolase, C-terminal domain HPY12_16500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY12_16500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY12_16515 PF06942 GlpM protein HPY12_16525 PF03466 LysR substrate binding domain HPY12_16525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_16530 PF03992 Antibiotic biosynthesis monooxygenase HPY12_16535 PF00881 Nitroreductase family HPY12_16540 PF00873 AcrB/AcrD/AcrF family HPY12_16555 PF04143 Sulphur transport HPY12_16570 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY12_16570 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY12_16615 PF02378 Phosphotransferase system, EIIC HPY12_16615 PF00367 phosphotransferase system, EIIB HPY12_16625 PF00251 Glycosyl hydrolases family 32 N-terminal domain HPY12_16625 PF08244 Glycosyl hydrolases family 32 C terminal HPY12_16630 PF00294 pfkB family carbohydrate kinase HPY12_16635 PF01266 FAD dependent oxidoreductase HPY12_16635 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HPY12_16640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_16640 PF00672 HAMP domain HPY12_16650 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY12_16650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY12_16655 PF13419 Haloacid dehalogenase-like hydrolase HPY12_16660 PF00672 HAMP domain HPY12_16660 PF12729 Four helix bundle sensory module for signal transduction HPY12_16660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_16665 PF03606 C4-dicarboxylate anaerobic carrier HPY12_16670 PF03313 Serine dehydratase alpha chain HPY12_16670 PF03315 Serine dehydratase beta chain HPY12_16675 PF00474 Sodium:solute symporter family HPY12_16690 PF00356 Bacterial regulatory proteins, lacI family HPY12_16695 PF00072 Response regulator receiver domain HPY12_16695 PF00196 Bacterial regulatory proteins, luxR family HPY12_16700 PF00672 HAMP domain HPY12_16700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_16700 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HPY12_16700 PF07730 Histidine kinase HPY12_16705 PF13187 4Fe-4S dicluster domain HPY12_16705 PF12838 4Fe-4S dicluster domain HPY12_16715 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY12_16715 PF00384 Molybdopterin oxidoreductase HPY12_16715 PF01568 Molydopterin dinucleotide binding domain HPY12_16720 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HPY12_16725 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY12_16735 PF01966 HD domain HPY12_16740 PF00072 Response regulator receiver domain HPY12_16740 PF00196 Bacterial regulatory proteins, luxR family HPY12_16745 PF07730 Histidine kinase HPY12_16745 PF05231 MASE1 HPY12_16745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_16750 PF07690 Major Facilitator Superfamily HPY12_16760 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_16765 PF08402 TOBE domain HPY12_16765 PF00005 ABC transporter HPY12_16770 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HPY12_16780 PF00108 Thiolase, N-terminal domain HPY12_16780 PF02803 Thiolase, C-terminal domain HPY12_16785 PF00106 short chain dehydrogenase HPY12_16790 PF02355 Protein export membrane protein HPY12_16790 PF07549 SecD/SecF GG Motif HPY12_16795 PF07549 SecD/SecF GG Motif HPY12_16795 PF02355 Protein export membrane protein HPY12_16795 PF13721 SecD export protein N-terminal TM region HPY12_16810 PF00990 Diguanylate cyclase, GGDEF domain HPY12_16810 PF17158 Membrane-associated sensor, integral membrane domain HPY12_16815 PF00483 Nucleotidyl transferase HPY12_16820 PF06483 Chitinase C HPY12_16820 PF00704 Glycosyl hydrolases family 18 HPY12_16825 PF00465 Iron-containing alcohol dehydrogenase HPY12_16835 PF02954 Bacterial regulatory protein, Fis family HPY12_16835 PF14532 Sigma-54 interaction domain HPY12_16835 PF00072 Response regulator receiver domain HPY12_16840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_16840 PF02743 Cache domain HPY12_16840 PF00512 His Kinase A (phospho-acceptor) domain HPY12_16850 PF07690 Major Facilitator Superfamily HPY12_16855 PF00224 Pyruvate kinase, barrel domain HPY12_16855 PF02887 Pyruvate kinase, alpha/beta domain HPY12_16860 PF00672 HAMP domain HPY12_16860 PF00072 Response regulator receiver domain HPY12_16860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_16860 PF00512 His Kinase A (phospho-acceptor) domain HPY12_16860 PF01627 Hpt domain HPY12_16865 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY12_16870 PF02142 MGS-like domain HPY12_16875 PF00857 Isochorismatase family HPY12_16880 PF01219 Prokaryotic diacylglycerol kinase HPY12_16895 PF00580 UvrD/REP helicase N-terminal domain HPY12_16895 PF12462 DNA helicase IV / RNA helicase N terminal HPY12_16895 PF13361 UvrD-like helicase C-terminal domain HPY12_16900 PF12805 FUSC-like inner membrane protein yccS HPY12_16905 PF00512 His Kinase A (phospho-acceptor) domain HPY12_16905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_16905 PF08448 PAS fold HPY12_16905 PF00072 Response regulator receiver domain HPY12_16905 PF13188 PAS domain HPY12_16930 PF03459 TOBE domain HPY12_16930 PF00005 ABC transporter HPY12_16935 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_16945 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY12_16945 PF07685 CobB/CobQ-like glutamine amidotransferase domain HPY12_16950 PF00271 Helicase conserved C-terminal domain HPY12_16985 PF09308 LuxQ, periplasmic HPY12_16985 PF00512 His Kinase A (phospho-acceptor) domain HPY12_16985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_16985 PF00072 Response regulator receiver domain HPY12_16990 PF13407 Periplasmic binding protein domain HPY12_17000 PF01541 GIY-YIG catalytic domain HPY12_17005 PF04337 Protein of unknown function, DUF480 HPY12_17015 PF04363 Protein of unknown function (DUF496) HPY12_17025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HPY12_17025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HPY12_17030 PF00230 Major intrinsic protein HPY12_17035 PF04324 BFD-like [2Fe-2S] binding domain HPY12_17035 PF01266 FAD dependent oxidoreductase HPY12_17040 PF00890 FAD binding domain HPY12_17045 PF02754 Cysteine-rich domain HPY12_17045 PF13183 4Fe-4S dicluster domain HPY12_17050 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY12_17050 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY12_17055 PF00085 Thioredoxin HPY12_17060 PF07690 Major Facilitator Superfamily HPY12_17080 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_17085 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_17090 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY12_17095 PF00005 ABC transporter HPY12_17105 PF05762 VWA domain containing CoxE-like protein HPY12_17110 PF17868 AAA lid domain HPY12_17110 PF12592 Protein of unknown function (DUF3763) HPY12_17110 PF07728 AAA domain (dynein-related subfamily) HPY12_17115 PF00293 NUDIX domain HPY12_17120 PF01212 Beta-eliminating lyase HPY12_17125 PF00034 Cytochrome c HPY12_17130 PF00440 Bacterial regulatory proteins, tetR family HPY12_17130 PF08361 MAATS-type transcriptional repressor, C-terminal region HPY12_17135 PF00270 DEAD/DEAH box helicase HPY12_17135 PF00271 Helicase conserved C-terminal domain HPY12_17140 PF04336 Acyl carrier protein phosphodiesterase HPY12_17145 PF03222 Tryptophan/tyrosine permease family HPY12_17150 PF00672 HAMP domain HPY12_17150 PF12729 Four helix bundle sensory module for signal transduction HPY12_17150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_17155 PF16363 GDP-mannose 4,6 dehydratase HPY12_17160 PF03746 LamB/YcsF family HPY12_17170 PF02626 Carboxyltransferase domain, subdomain A and B HPY12_17180 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY12_17180 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY12_17190 PF00005 ABC transporter HPY12_17195 PF13472 GDSL-like Lipase/Acylhydrolase family HPY12_17200 PF07055 Enoyl reductase FAD binding domain HPY12_17200 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY12_17200 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY12_17205 PF00563 EAL domain HPY12_17205 PF00990 Diguanylate cyclase, GGDEF domain HPY12_17205 PF00498 FHA domain HPY12_17215 PF01556 DnaJ C terminal domain HPY12_17215 PF00684 DnaJ central domain HPY12_17215 PF00226 DnaJ domain HPY12_17230 PF13419 Haloacid dehalogenase-like hydrolase HPY12_17245 PF00294 pfkB family carbohydrate kinase HPY12_17250 PF00884 Sulfatase HPY12_17260 PF03880 DbpA RNA binding domain HPY12_17260 PF00270 DEAD/DEAH box helicase HPY12_17260 PF00271 Helicase conserved C-terminal domain HPY12_17265 PF00575 S1 RNA binding domain HPY12_17265 PF08206 Ribonuclease B OB domain HPY12_17265 PF00773 RNB domain HPY12_17275 PF12849 PBP superfamily domain HPY12_17280 PF01575 MaoC like domain HPY12_17285 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HPY12_17290 PF18416 N-acetylglucosamine binding protein domain 2 HPY12_17290 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HPY12_17295 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY12_17295 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY12_17295 PF03413 Peptidase propeptide and YPEB domain HPY12_17295 PF04151 Bacterial pre-peptidase C-terminal domain HPY12_17295 PF01447 Thermolysin metallopeptidase, catalytic domain HPY12_17300 PF04151 Bacterial pre-peptidase C-terminal domain HPY12_17300 PF04389 Peptidase family M28 HPY12_17305 PF00491 Arginase family HPY12_17310 PF17944 Arginine decarboxylase C-terminal helical extension HPY12_17310 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY12_17310 PF17810 Arginine decarboxylase helical bundle domain HPY12_17320 PF01769 Divalent cation transporter HPY12_17320 PF00571 CBS domain HPY12_17320 PF03448 MgtE intracellular N domain HPY12_17325 PF00166 Chaperonin 10 Kd subunit HPY12_17330 PF00118 TCP-1/cpn60 chaperonin family HPY12_17340 PF00696 Amino acid kinase family HPY12_17340 PF13840 ACT domain HPY12_17345 PF06339 Ectoine synthase HPY12_17350 PF00202 Aminotransferase class-III HPY12_17355 PF00583 Acetyltransferase (GNAT) family HPY12_17360 PF01329 Pterin 4 alpha carbinolamine dehydratase HPY12_17365 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HPY12_17370 PF00501 AMP-binding enzyme HPY12_17370 PF13193 AMP-binding enzyme C-terminal domain HPY12_17390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_17390 PF03466 LysR substrate binding domain HPY12_17400 PF00892 EamA-like transporter family HPY12_17405 PF00132 Bacterial transferase hexapeptide (six repeats) HPY12_17405 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal HPY12_17405 PF14602 Hexapeptide repeat of succinyl-transferase HPY12_17410 PF00571 CBS domain HPY12_17410 PF01595 Cyclin M transmembrane N-terminal domain HPY12_17410 PF03471 Transporter associated domain HPY12_17415 PF02566 OsmC-like protein HPY12_17420 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY12_17425 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY12_17425 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY12_17445 PF14759 Reductase C-terminal HPY12_17445 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY12_17450 PF13520 Amino acid permease HPY12_17455 PF00990 Diguanylate cyclase, GGDEF domain HPY12_17465 PF04397 LytTr DNA-binding domain HPY12_17465 PF00072 Response regulator receiver domain HPY12_17470 PF07694 5TMR of 5TMR-LYT HPY12_17470 PF13492 GAF domain HPY12_17470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_17470 PF06580 Histidine kinase HPY12_17485 PF00005 ABC transporter HPY12_17485 PF02687 FtsX-like permease family HPY12_17485 PF12704 MacB-like periplasmic core domain HPY12_17490 PF00005 ABC transporter HPY12_17500 PF00248 Aldo/keto reductase family HPY12_17505 PF00128 Alpha amylase, catalytic domain HPY12_17515 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY12_17520 PF12262 Bacterial virulence factor lipase N-terminal HPY12_17525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_17525 PF13426 PAS domain HPY12_17525 PF08447 PAS fold HPY12_17530 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY12_17530 PF03413 Peptidase propeptide and YPEB domain HPY12_17530 PF04151 Bacterial pre-peptidase C-terminal domain HPY12_17530 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY12_17530 PF01447 Thermolysin metallopeptidase, catalytic domain HPY12_17535 PF03922 OmpW family HPY12_17545 PF00768 D-alanyl-D-alanine carboxypeptidase HPY12_17550 PF00392 Bacterial regulatory proteins, gntR family HPY12_17550 PF00155 Aminotransferase class I and II HPY12_17555 PF01654 Cytochrome bd terminal oxidase subunit I HPY12_17560 PF02322 Cytochrome bd terminal oxidase subunit II HPY12_17575 PF00291 Pyridoxal-phosphate dependent enzyme HPY12_17580 PF03466 LysR substrate binding domain HPY12_17580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_17625 PF08240 Alcohol dehydrogenase GroES-like domain HPY12_17625 PF00107 Zinc-binding dehydrogenase HPY12_17630 PF00155 Aminotransferase class I and II HPY12_17645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_17645 PF03466 LysR substrate binding domain HPY12_17650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY12_17675 PF01966 HD domain HPY12_17680 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HPY12_17680 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HPY12_17685 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HPY12_17690 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY12_17690 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HPY12_17715 PF02595 Glycerate kinase family HPY12_17720 PF02447 GntP family permease HPY12_17730 PF00672 HAMP domain HPY12_17730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_17735 PF01243 Pyridoxamine 5'-phosphate oxidase HPY12_17740 PF06228 Haem utilisation ChuX/HutX HPY12_17745 PF04055 Radical SAM superfamily HPY12_17750 PF03544 Gram-negative bacterial TonB protein C-terminal HPY12_17755 PF01618 MotA/TolQ/ExbB proton channel family HPY12_17760 PF02472 Biopolymer transport protein ExbD/TolR HPY12_17765 PF01497 Periplasmic binding protein HPY12_17770 PF01032 FecCD transport family HPY12_17775 PF00005 ABC transporter HPY12_17805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_17805 PF02743 Cache domain HPY12_17805 PF00672 HAMP domain HPY12_17810 PF03476 MOSC N-terminal beta barrel domain HPY12_17810 PF03476 MOSC N-terminal beta barrel domain HPY12_17810 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY12_17810 PF03473 MOSC domain HPY12_17810 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY12_17810 PF03473 MOSC domain HPY12_17815 PF01979 Amidohydrolase family HPY12_17825 PF05656 Protein of unknown function (DUF805) HPY12_17835 PF05958 tRNA (Uracil-5-)-methyltransferase HPY12_17840 PF05661 Protein of unknown function (DUF808) HPY12_17850 PF00313 'Cold-shock' DNA-binding domain HPY12_17875 PF08448 PAS fold HPY12_17875 PF00990 Diguanylate cyclase, GGDEF domain HPY12_17880 PF08220 DeoR-like helix-turn-helix domain HPY12_17880 PF00455 DeoR C terminal sensor domain HPY12_17895 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_17900 PF14785 Maltose transport system permease protein MalF P2 domain HPY12_17900 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_17905 PF01547 Bacterial extracellular solute-binding protein HPY12_17910 PF00005 ABC transporter HPY12_17910 PF08402 TOBE domain HPY12_17930 PF01906 Putative heavy-metal-binding HPY12_17935 PF00196 Bacterial regulatory proteins, luxR family HPY12_17945 PF00072 Response regulator receiver domain HPY12_17945 PF01584 CheW-like domain HPY12_17950 PF01047 MarR family HPY12_17955 PF00990 Diguanylate cyclase, GGDEF domain HPY12_17970 PF00563 EAL domain HPY12_17970 PF03707 Bacterial signalling protein N terminal repeat HPY12_17970 PF00990 Diguanylate cyclase, GGDEF domain HPY12_17990 PF03466 LysR substrate binding domain HPY12_17990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_17995 PF00990 Diguanylate cyclase, GGDEF domain HPY12_17995 PF00563 EAL domain HPY12_18005 PF02678 Pirin HPY12_18005 PF05726 Pirin C-terminal cupin domain HPY12_18010 PF06865 Pyrimidine/purine nucleoside phosphorylase HPY12_18020 PF07690 Major Facilitator Superfamily HPY12_18025 PF17200 Single Cache domain 2 HPY12_18025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_18025 PF00672 HAMP domain HPY12_18030 PF13654 AAA domain HPY12_18030 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY12_18040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY12_18040 PF00005 ABC transporter HPY12_18045 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY12_18050 PF02743 Cache domain HPY12_18050 PF00672 HAMP domain HPY12_18050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_18060 PF03466 LysR substrate binding domain HPY12_18060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_18070 PF02652 L-lactate permease HPY12_18075 PF01070 FMN-dependent dehydrogenase HPY12_18085 PF03618 Kinase/pyrophosphorylase HPY12_18090 PF00391 PEP-utilising enzyme, mobile domain HPY12_18090 PF02896 PEP-utilising enzyme, TIM barrel domain HPY12_18090 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HPY12_18095 PF08447 PAS fold HPY12_18095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_18100 PF01554 MatE HPY12_18105 PF00271 Helicase conserved C-terminal domain HPY12_18105 PF00270 DEAD/DEAH box helicase HPY12_18110 PF03466 LysR substrate binding domain HPY12_18110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_18120 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY12_18130 PF00005 ABC transporter HPY12_18130 PF00664 ABC transporter transmembrane region HPY12_18140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY12_18150 PF01810 LysE type translocator HPY12_18155 PF12833 Helix-turn-helix domain HPY12_18170 PF01557 Fumarylacetoacetate (FAA) hydrolase family HPY12_18175 PF01047 MarR family HPY12_18180 PF02566 OsmC-like protein HPY12_18185 PF13609 Gram-negative porin HPY12_18190 PF00892 EamA-like transporter family HPY12_18195 PF00462 Glutaredoxin HPY12_18200 PF07670 Nucleoside recognition HPY12_18205 PF07670 Nucleoside recognition HPY12_18210 PF03600 Citrate transporter HPY12_18220 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY12_18220 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HPY12_18225 PF06029 AlkA N-terminal domain HPY12_18225 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY12_18230 PF07681 DoxX HPY12_18235 PF03466 LysR substrate binding domain HPY12_18235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_18255 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HPY12_18265 PF07148 Maltose operon periplasmic protein precursor (MalM) HPY12_18270 PF02264 LamB porin HPY12_18275 PF00128 Alpha amylase, catalytic domain HPY12_18275 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY12_18285 PF12729 Four helix bundle sensory module for signal transduction HPY12_18285 PF00672 HAMP domain HPY12_18285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_18300 PF00672 HAMP domain HPY12_18300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_18310 PF00793 DAHP synthetase I family HPY12_18315 PF00005 ABC transporter HPY12_18320 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_18325 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY12_18330 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_18335 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY12_18335 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY12_18335 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY12_18335 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY12_18340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY12_18340 PF02378 Phosphotransferase system, EIIC HPY12_18340 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY12_18345 PF08125 Mannitol dehydrogenase C-terminal domain HPY12_18345 PF01232 Mannitol dehydrogenase Rossmann domain HPY12_18350 PF05068 Mannitol repressor HPY12_18355 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY12_18385 PF01047 MarR family HPY12_18395 PF00857 Isochorismatase family HPY12_18400 PF12833 Helix-turn-helix domain HPY12_18400 PF02311 AraC-like ligand binding domain HPY12_18405 PF13460 NAD(P)H-binding HPY12_18410 PF03466 LysR substrate binding domain HPY12_18410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_18415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_18415 PF02743 Cache domain HPY12_18415 PF00672 HAMP domain HPY12_18420 PF00106 short chain dehydrogenase HPY12_18425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY12_18425 PF03466 LysR substrate binding domain HPY12_18430 PF04013 Putative SAM-dependent RNA methyltransferase HPY12_18435 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY12_18440 PF13520 Amino acid permease HPY12_18445 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HPY12_18445 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HPY12_18445 PF01276 Orn/Lys/Arg decarboxylase, major domain HPY12_18455 PF00171 Aldehyde dehydrogenase family HPY12_18460 PF01037 Lrp/AsnC ligand binding domain HPY12_18465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_18465 PF02743 Cache domain HPY12_18465 PF00672 HAMP domain HPY12_18475 PF00474 Sodium:solute symporter family HPY12_18485 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HPY12_18485 PF14850 DNA-binding domain of Proline dehydrogenase HPY12_18485 PF01619 Proline dehydrogenase HPY12_18485 PF00171 Aldehyde dehydrogenase family HPY12_18490 PF12833 Helix-turn-helix domain HPY12_18500 PF03781 Sulfatase-modifying factor enzyme 1 HPY12_18505 PF00196 Bacterial regulatory proteins, luxR family HPY12_18505 PF00072 Response regulator receiver domain HPY12_18510 PF01243 Pyridoxamine 5'-phosphate oxidase HPY12_18510 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HPY12_18515 PF00529 HlyD membrane-fusion protein of T1SS HPY12_18530 PF03412 Peptidase C39 family HPY12_18530 PF00664 ABC transporter transmembrane region HPY12_18530 PF00005 ABC transporter HPY12_18540 PF00072 Response regulator receiver domain HPY12_18540 PF00486 Transcriptional regulatory protein, C terminal HPY12_18550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_18550 PF02743 Cache domain HPY12_18550 PF00672 HAMP domain HPY12_18555 PF01339 CheB methylesterase HPY12_18555 PF00072 Response regulator receiver domain HPY12_18560 PF03975 CheD chemotactic sensory transduction HPY12_18565 PF03705 CheR methyltransferase, all-alpha domain HPY12_18565 PF01739 CheR methyltransferase, SAM binding domain HPY12_18570 PF02203 Tar ligand binding domain homologue HPY12_18570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY12_18570 PF00672 HAMP domain HPY12_18575 PF01584 CheW-like domain HPY12_18580 PF01584 CheW-like domain HPY12_18585 PF09078 CheY binding HPY12_18585 PF01584 CheW-like domain HPY12_18585 PF02895 Signal transducing histidine kinase, homodimeric domain HPY12_18585 PF01627 Hpt domain HPY12_18585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_18590 PF00072 Response regulator receiver domain HPY12_18605 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_18610 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY12_18610 PF00528 Binding-protein-dependent transport system inner membrane component HPY12_18615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY12_18615 PF00005 ABC transporter HPY12_18620 PF00884 Sulfatase HPY12_18620 PF08019 Phosphoethanolamine transferase EptA/EptB HPY12_18625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY12_18625 PF00512 His Kinase A (phospho-acceptor) domain HPY12_18625 PF08521 Two-component sensor kinase N-terminal HPY12_18630 PF00072 Response regulator receiver domain HPY12_18630 PF00486 Transcriptional regulatory protein, C terminal HPY12_18650 PF00501 AMP-binding enzyme HPY12_18660 PF13718 GNAT acetyltransferase 2 HPY12_18660 PF05127 Helicase HPY12_18665 PF13416 Bacterial extracellular solute-binding protein