locus-tag class description HPY05_00005 PF00308 Bacterial dnaA protein HPY05_00005 PF08299 Bacterial dnaA protein helix-turn-helix HPY05_00005 PF11638 DnaA N-terminal domain HPY05_00010 PF02767 DNA polymerase III beta subunit, central domain HPY05_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HPY05_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HPY05_00015 PF02463 RecF/RecN/SMC N terminal domain HPY05_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_00020 PF01751 Toprim domain HPY05_00020 PF18053 DNA gyrase B subunit insert domain HPY05_00020 PF00204 DNA gyrase B HPY05_00020 PF00986 DNA gyrase B subunit, carboxyl terminus HPY05_00030 PF00011 Hsp20/alpha crystallin family HPY05_00035 PF00155 Aminotransferase class I and II HPY05_00040 PF02092 Glycyl-tRNA synthetase beta subunit HPY05_00040 PF05746 DALR anticodon binding domain HPY05_00045 PF02091 Glycyl-tRNA synthetase alpha subunit HPY05_00050 PF01169 Uncharacterized protein family UPF0016 HPY05_00060 PF01206 Sulfurtransferase TusA HPY05_00070 PF08240 Alcohol dehydrogenase GroES-like domain HPY05_00070 PF00107 Zinc-binding dehydrogenase HPY05_00075 PF00291 Pyridoxal-phosphate dependent enzyme HPY05_00075 PF00585 C-terminal regulatory domain of Threonine dehydratase HPY05_00080 PF00920 Dehydratase family HPY05_00085 PF01063 Amino-transferase class IV HPY05_00095 PF00205 Thiamine pyrophosphate enzyme, central domain HPY05_00095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY05_00095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY05_00100 PF13335 Magnesium chelatase, subunit ChlI C-terminal HPY05_00100 PF01078 Magnesium chelatase, subunit ChlI HPY05_00105 PF01553 Acyltransferase HPY05_00110 PF01323 DSBA-like thioredoxin domain HPY05_00115 PF01636 Phosphotransferase enzyme family HPY05_00120 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HPY05_00120 PF12801 4Fe-4S binding domain HPY05_00120 PF13746 4Fe-4S dicluster domain HPY05_00125 PF06288 Protein of unknown function (DUF1040) HPY05_00135 PF07070 SpoOM protein HPY05_00140 PF03006 Haemolysin-III related HPY05_00150 PF02386 Cation transport protein HPY05_00155 PF02254 TrkA-N domain HPY05_00155 PF02080 TrkA-C domain HPY05_00160 PF01029 NusB family HPY05_00160 PF01189 16S rRNA methyltransferase RsmB/F HPY05_00165 PF02911 Formyl transferase, C-terminal domain HPY05_00165 PF00551 Formyl transferase HPY05_00170 PF01327 Polypeptide deformylase HPY05_00175 PF01476 LysM domain HPY05_00180 PF02481 DNA recombination-mediator protein A HPY05_00180 PF17782 DprA winged helix domain HPY05_00185 PF04361 Protein of unknown function (DUF494) HPY05_00190 PF01396 Topoisomerase DNA binding C4 zinc finger HPY05_00195 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HPY05_00195 PF02222 ATP-grasp domain HPY05_00200 PF00731 AIR carboxylase HPY05_00205 PF01300 Telomere recombination HPY05_00210 PF01218 Coproporphyrinogen III oxidase HPY05_00215 PF01488 Shikimate / quinate 5-dehydrogenase HPY05_00215 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HPY05_00215 PF08501 Shikimate dehydrogenase substrate binding domain HPY05_00225 PF00132 Bacterial transferase hexapeptide (six repeats) HPY05_00260 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HPY05_00265 PF01964 Radical SAM ThiC family HPY05_00265 PF13667 ThiC-associated domain HPY05_00270 PF02581 Thiamine monophosphate synthase HPY05_00275 PF00899 ThiF family HPY05_00280 PF02597 ThiS family HPY05_00285 PF05690 Thiazole biosynthesis protein ThiG HPY05_00290 PF04055 Radical SAM superfamily HPY05_00290 PF06968 Biotin and Thiamin Synthesis associated domain HPY05_00295 PF00557 Metallopeptidase family M24 HPY05_00295 PF01321 Creatinase/Prolidase N-terminal domain HPY05_00295 PF01321 Creatinase/Prolidase N-terminal domain HPY05_00295 PF00557 Metallopeptidase family M24 HPY05_00300 PF03466 LysR substrate binding domain HPY05_00300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_00305 PF07690 Major Facilitator Superfamily HPY05_00315 PF01037 Lrp/AsnC ligand binding domain HPY05_00320 PF00563 EAL domain HPY05_00320 PF00990 Diguanylate cyclase, GGDEF domain HPY05_00320 PF08448 PAS fold HPY05_00325 PF04445 Putative SAM-dependent methyltransferase HPY05_00335 PF00892 EamA-like transporter family HPY05_00340 PF00582 Universal stress protein family HPY05_00345 PF00210 Ferritin-like domain HPY05_00350 PF10625 Universal stress protein B (UspB) HPY05_00365 PF02646 RmuC family HPY05_00370 PF01209 ubiE/COQ5 methyltransferase family HPY05_00375 PF02036 SCP-2 sterol transfer family HPY05_00380 PF03109 ABC1 family HPY05_00385 PF02416 mttA/Hcf106 family HPY05_00390 PF02416 mttA/Hcf106 family HPY05_00395 PF00902 Sec-independent protein translocase protein (TatC) HPY05_00400 PF00034 Cytochrome c HPY05_00400 PF03150 Di-haem cytochrome c peroxidase HPY05_00405 PF01554 MatE HPY05_00415 PF01726 LexA DNA binding domain HPY05_00415 PF00717 Peptidase S24-like HPY05_00420 PF01553 Acyltransferase HPY05_00425 PF01040 UbiA prenyltransferase family HPY05_00430 PF04345 Chorismate lyase HPY05_00435 PF03748 Flagellar basal body-associated protein FliL HPY05_00440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_00440 PF00672 HAMP domain HPY05_00440 PF02203 Tar ligand binding domain homologue HPY05_00445 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HPY05_00445 PF01694 Rhomboid family HPY05_00450 PF00581 Rhodanese-like domain HPY05_00455 PF01026 TatD related DNase HPY05_00460 PF00490 Delta-aminolevulinic acid dehydratase HPY05_00470 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY05_00470 PF01612 3'-5' exonuclease HPY05_00470 PF00476 DNA polymerase family A HPY05_00470 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY05_00475 PF01926 50S ribosome-binding GTPase HPY05_00480 PF00034 Cytochrome c HPY05_00490 PF04220 Der GTPase activator (YihI) HPY05_00495 PF10675 Protein of unknown function (DUF2489) HPY05_00500 PF04055 Radical SAM superfamily HPY05_00500 PF06969 HemN C-terminal domain HPY05_00505 PF07219 HemY protein N-terminus HPY05_00505 PF07719 Tetratricopeptide repeat HPY05_00510 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HPY05_00515 PF02602 Uroporphyrinogen-III synthase HemD HPY05_00520 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HPY05_00520 PF03900 Porphobilinogen deaminase, C-terminal domain HPY05_00525 PF12633 Adenylate cyclase NT domain HPY05_00525 PF01295 Adenylate cyclase, class-I HPY05_00530 PF01491 Frataxin-like domain HPY05_00540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY05_00540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HPY05_00545 PF01678 Diaminopimelate epimerase HPY05_00550 PF04340 Protein of unknown function, DUF484 HPY05_00555 PF02899 Phage integrase, N-terminal SAM-like domain HPY05_00555 PF00589 Phage integrase family HPY05_00560 PF13419 Haloacid dehalogenase-like hydrolase HPY05_00565 PF00563 EAL domain HPY05_00565 PF08495 FIST N domain HPY05_00565 PF10442 FIST C domain HPY05_00565 PF00990 Diguanylate cyclase, GGDEF domain HPY05_00585 PF12146 Serine aminopeptidase, S33 HPY05_00590 PF01810 LysE type translocator HPY05_00595 PF00563 EAL domain HPY05_00595 PF08668 HDOD domain HPY05_00600 PF00210 Ferritin-like domain HPY05_00635 PF00448 SRP54-type protein, GTPase domain HPY05_00635 PF02881 SRP54-type protein, helical bundle domain HPY05_00640 PF00005 ABC transporter HPY05_00645 PF18075 FtsX extracellular domain HPY05_00650 PF04545 Sigma-70, region 4 HPY05_00650 PF00140 Sigma-70 factor, region 1.2 HPY05_00650 PF04542 Sigma-70 region 2 HPY05_00655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY05_00655 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY05_00660 PF00440 Bacterial regulatory proteins, tetR family HPY05_00670 PF05958 tRNA (Uracil-5-)-methyltransferase HPY05_00675 PF07715 TonB-dependent Receptor Plug Domain HPY05_00675 PF00593 TonB dependent receptor HPY05_00680 PF04151 Bacterial pre-peptidase C-terminal domain HPY05_00680 PF00082 Subtilase family HPY05_00680 PF05922 Peptidase inhibitor I9 HPY05_00685 PF01177 Asp/Glu/Hydantoin racemase HPY05_00750 PF00962 Adenosine/AMP deaminase HPY05_00755 PF03707 Bacterial signalling protein N terminal repeat HPY05_00755 PF00990 Diguanylate cyclase, GGDEF domain HPY05_00755 PF00563 EAL domain HPY05_00755 PF13188 PAS domain HPY05_00760 PF00158 Sigma-54 interaction domain HPY05_00760 PF00072 Response regulator receiver domain HPY05_00760 PF02954 Bacterial regulatory protein, Fis family HPY05_00765 PF00989 PAS fold HPY05_00765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_00765 PF00512 His Kinase A (phospho-acceptor) domain HPY05_00775 PF03951 Glutamine synthetase, beta-Grasp domain HPY05_00775 PF00120 Glutamine synthetase, catalytic domain HPY05_00795 PF03631 Virulence factor BrkB HPY05_00800 PF02580 D-Tyr-tRNA(Tyr) deacylase HPY05_00815 PF01293 Phosphoenolpyruvate carboxykinase HPY05_00820 PF01430 Hsp33 protein HPY05_00825 PF01479 S4 domain HPY05_00830 PF11356 Type II secretion system protein C HPY05_00835 PF00263 Bacterial type II and III secretion system protein HPY05_00835 PF03958 Bacterial type II/III secretion system short domain HPY05_00840 PF00437 Type II/IV secretion system protein HPY05_00845 PF00482 Type II secretion system (T2SS), protein F HPY05_00850 PF07963 Prokaryotic N-terminal methylation motif HPY05_00850 PF08334 Type II secretion system (T2SS), protein G HPY05_00855 PF12019 Type II transport protein GspH HPY05_00860 PF07963 Prokaryotic N-terminal methylation motif HPY05_00860 PF02501 Type II secretion system (T2SS), protein I HPY05_00865 PF07963 Prokaryotic N-terminal methylation motif HPY05_00865 PF11612 Type II secretion system (T2SS), protein J HPY05_00870 PF03934 Type II secretion system (T2SS), protein K HPY05_00875 PF12693 GspL periplasmic domain HPY05_00875 PF05134 Type II secretion system (T2SS), protein L HPY05_00880 PF04612 Type II secretion system (T2SS), protein M HPY05_00885 PF01203 Type II secretion system (T2SS), protein N HPY05_00890 PF00459 Inositol monophosphatase family HPY05_00895 PF00293 NUDIX domain HPY05_00900 PF01106 NifU-like domain HPY05_00900 PF01521 Iron-sulphur cluster biosynthesis HPY05_00905 PF00156 Phosphoribosyl transferase domain HPY05_00915 PF00561 alpha/beta hydrolase fold HPY05_00925 PF16921 Tex protein YqgF-like domain HPY05_00925 PF09371 Tex-like protein N-terminal domain HPY05_00925 PF00575 S1 RNA binding domain HPY05_00925 PF17674 HHH domain HPY05_00930 PF03449 Transcription elongation factor, N-terminal HPY05_00930 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY05_00935 PF17152 Periplasmic sensor domain HPY05_00935 PF00990 Diguanylate cyclase, GGDEF domain HPY05_00940 PF00072 Response regulator receiver domain HPY05_00940 PF00486 Transcriptional regulatory protein, C terminal HPY05_00945 PF00672 HAMP domain HPY05_00945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_00945 PF00512 His Kinase A (phospho-acceptor) domain HPY05_00950 PF00860 Permease family HPY05_00955 PF17191 RecG wedge domain HPY05_00955 PF00271 Helicase conserved C-terminal domain HPY05_00955 PF00270 DEAD/DEAH box helicase HPY05_00960 PF13291 ACT domain HPY05_00960 PF04607 Region found in RelA / SpoT proteins HPY05_00960 PF02824 TGS domain HPY05_00965 PF01192 RNA polymerase Rpb6 HPY05_00970 PF00625 Guanylate kinase HPY05_00975 PF02592 Putative vitamin uptake transporter HPY05_00980 PF00474 Sodium:solute symporter family HPY05_00990 PF02080 TrkA-C domain HPY05_00990 PF00999 Sodium/hydrogen exchanger family HPY05_00990 PF03471 Transporter associated domain HPY05_00995 PF00072 Response regulator receiver domain HPY05_00995 PF00196 Bacterial regulatory proteins, luxR family HPY05_01000 PF11412 Disulphide bond corrector protein DsbC HPY05_01000 PF02683 Cytochrome C biogenesis protein transmembrane region HPY05_01005 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY05_01005 PF17967 Pullulanase N2 domain HPY05_01005 PF18494 Pullulanase Ins domain HPY05_01005 PF03714 Bacterial pullanase-associated domain HPY05_01005 PF11852 Domain of unknown function (DUF3372) HPY05_01010 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY05_01015 PF00206 Lyase HPY05_01015 PF10415 Fumarase C C-terminus HPY05_01020 PF00990 Diguanylate cyclase, GGDEF domain HPY05_01020 PF17158 Membrane-associated sensor, integral membrane domain HPY05_01025 PF04186 FxsA cytoplasmic membrane protein HPY05_01030 PF00588 SpoU rRNA Methylase family HPY05_01035 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY05_01035 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY05_01040 PF16527 Two-component sensor protein CpxA, periplasmic domain HPY05_01040 PF00672 HAMP domain HPY05_01040 PF00512 His Kinase A (phospho-acceptor) domain HPY05_01040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_01045 PF00486 Transcriptional regulatory protein, C terminal HPY05_01045 PF00072 Response regulator receiver domain HPY05_01055 PF16916 Dimerisation domain of Zinc Transporter HPY05_01055 PF01545 Cation efflux family HPY05_01060 PF00365 Phosphofructokinase HPY05_01065 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HPY05_01070 PF06005 Cell division protein ZapB HPY05_01075 PF02219 Methylenetetrahydrofolate reductase HPY05_01080 PF00742 Homoserine dehydrogenase HPY05_01080 PF03447 Homoserine dehydrogenase, NAD binding domain HPY05_01080 PF00696 Amino acid kinase family HPY05_01085 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY05_01090 PF01340 Met Apo-repressor, MetJ HPY05_01095 PF03949 Malic enzyme, NAD binding domain HPY05_01095 PF00390 Malic enzyme, N-terminal domain HPY05_01100 PF01197 Ribosomal protein L31 HPY05_01105 PF00271 Helicase conserved C-terminal domain HPY05_01105 PF00270 DEAD/DEAH box helicase HPY05_01105 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HPY05_01105 PF18074 Primosomal protein N C-terminal domain HPY05_01105 PF17764 3′ DNA-binding domain (3′BD) HPY05_01110 PF00356 Bacterial regulatory proteins, lacI family HPY05_01115 PF05036 Sporulation related domain HPY05_01120 PF00227 Proteasome subunit HPY05_01125 PF10431 C-terminal, D2-small domain, of ClpB protein HPY05_01125 PF07724 AAA domain (Cdc48 subfamily) HPY05_01125 PF00004 ATPase family associated with various cellular activities (AAA) HPY05_01130 PF01040 UbiA prenyltransferase family HPY05_01135 PF03737 Aldolase/RraA HPY05_01140 PF01554 MatE HPY05_01165 PF00455 DeoR C terminal sensor domain HPY05_01165 PF08220 DeoR-like helix-turn-helix domain HPY05_01170 PF00166 Chaperonin 10 Kd subunit HPY05_01175 PF00118 TCP-1/cpn60 chaperonin family HPY05_01185 PF04055 Radical SAM superfamily HPY05_01190 PF09285 Elongation factor P, C-terminal HPY05_01190 PF08207 Elongation factor P (EF-P) KOW-like domain HPY05_01190 PF01132 Elongation factor P (EF-P) OB domain HPY05_01195 PF02313 Fumarate reductase subunit D HPY05_01200 PF02300 Fumarate reductase subunit C HPY05_01205 PF13183 4Fe-4S dicluster domain HPY05_01205 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY05_01210 PF00890 FAD binding domain HPY05_01210 PF02910 Fumarate reductase flavoprotein C-term HPY05_01215 PF00152 tRNA synthetases class II (D, K and N) HPY05_01220 PF00581 Rhodanese-like domain HPY05_01225 PF02556 Preprotein translocase subunit SecB HPY05_01230 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HPY05_01230 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HPY05_01235 PF06426 Serine acetyltransferase, N-terminal HPY05_01235 PF00132 Bacterial transferase hexapeptide (six repeats) HPY05_01245 PF00311 Phosphoenolpyruvate carboxylase HPY05_01250 PF07687 Peptidase dimerisation domain HPY05_01250 PF01546 Peptidase family M20/M25/M40 HPY05_01255 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY05_01255 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY05_01260 PF00696 Amino acid kinase family HPY05_01265 PF00764 Arginosuccinate synthase HPY05_01270 PF00206 Lyase HPY05_01270 PF14698 Argininosuccinate lyase C-terminal HPY05_01280 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY05_01280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY05_01285 PF00462 Glutaredoxin HPY05_01285 PF08534 Redoxin HPY05_01290 PF03466 LysR substrate binding domain HPY05_01290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_01295 PF00912 Transglycosylase HPY05_01295 PF00905 Penicillin binding protein transpeptidase domain HPY05_01295 PF17092 Penicillin-binding protein OB-like domain HPY05_01320 PF11741 AMIN domain HPY05_01320 PF03958 Bacterial type II/III secretion system short domain HPY05_01320 PF00263 Bacterial type II and III secretion system protein HPY05_01320 PF07660 Secretin and TonB N terminus short domain HPY05_01325 PF01202 Shikimate kinase HPY05_01330 PF01761 3-dehydroquinate synthase HPY05_01340 PF02086 D12 class N6 adenine-specific DNA methyltransferase HPY05_01345 PF00834 Ribulose-phosphate 3 epimerase family HPY05_01350 PF13419 Haloacid dehalogenase-like hydrolase HPY05_01355 PF00579 tRNA synthetases class I (W and Y) HPY05_01375 PF04055 Radical SAM superfamily HPY05_01375 PF00919 Uncharacterized protein family UPF0004 HPY05_01375 PF18693 TRAM domain HPY05_01380 PF00117 Glutamine amidotransferase class-I HPY05_01385 PF00202 Aminotransferase class-III HPY05_01390 PF04958 Arginine N-succinyltransferase beta subunit HPY05_01395 PF00171 Aldehyde dehydrogenase family HPY05_01405 PF13545 Crp-like helix-turn-helix domain HPY05_01405 PF00027 Cyclic nucleotide-binding domain HPY05_01410 PF00485 Phosphoribulokinase / Uridine kinase family HPY05_01415 PF06794 Uncharacterised protein family (UPF0270) HPY05_01420 PF00561 alpha/beta hydrolase fold HPY05_01430 PF12848 ABC transporter HPY05_01430 PF00005 ABC transporter HPY05_01435 PF02525 Flavodoxin-like fold HPY05_01440 PF00999 Sodium/hydrogen exchanger family HPY05_01440 PF02254 TrkA-N domain HPY05_01450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY05_01455 PF01112 Asparaginase HPY05_01460 PF00709 Adenylosuccinate synthetase HPY05_01465 PF08238 Sel1 repeat HPY05_01470 PF11893 Domain of unknown function (DUF3413) HPY05_01470 PF00884 Sulfatase HPY05_01475 PF17876 Cold shock domain HPY05_01475 PF08461 Ribonuclease R winged-helix domain HPY05_01475 PF08206 Ribonuclease B OB domain HPY05_01475 PF00773 RNB domain HPY05_01475 PF00575 S1 RNA binding domain HPY05_01480 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY05_01480 PF00588 SpoU rRNA Methylase family HPY05_01485 PF00338 Ribosomal protein S10p/S20e HPY05_01490 PF00297 Ribosomal protein L3 HPY05_01495 PF00573 Ribosomal protein L4/L1 family HPY05_01500 PF00276 Ribosomal protein L23 HPY05_01505 PF00181 Ribosomal Proteins L2, RNA binding domain HPY05_01505 PF03947 Ribosomal Proteins L2, C-terminal domain HPY05_01510 PF00203 Ribosomal protein S19 HPY05_01515 PF00237 Ribosomal protein L22p/L17e HPY05_01520 PF00189 Ribosomal protein S3, C-terminal domain HPY05_01520 PF07650 KH domain HPY05_01525 PF00252 Ribosomal protein L16p/L10e HPY05_01530 PF00831 Ribosomal L29 protein HPY05_01535 PF00366 Ribosomal protein S17 HPY05_01540 PF00238 Ribosomal protein L14p/L23e HPY05_01545 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HPY05_01545 PF00467 KOW motif HPY05_01550 PF00281 Ribosomal protein L5 HPY05_01550 PF00673 ribosomal L5P family C-terminus HPY05_01555 PF00253 Ribosomal protein S14p/S29e HPY05_01560 PF00410 Ribosomal protein S8 HPY05_01565 PF00347 Ribosomal protein L6 HPY05_01570 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HPY05_01575 PF03719 Ribosomal protein S5, C-terminal domain HPY05_01575 PF00333 Ribosomal protein S5, N-terminal domain HPY05_01580 PF00327 Ribosomal protein L30p/L7e HPY05_01585 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HPY05_01590 PF00344 SecY translocase HPY05_01595 PF00444 Ribosomal protein L36 HPY05_01600 PF00416 Ribosomal protein S13/S18 HPY05_01605 PF00411 Ribosomal protein S11 HPY05_01610 PF01479 S4 domain HPY05_01610 PF00163 Ribosomal protein S4/S9 N-terminal domain HPY05_01615 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HPY05_01615 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HPY05_01615 PF01000 RNA polymerase Rpb3/RpoA insert domain HPY05_01620 PF01196 Ribosomal protein L17 HPY05_01630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY05_01630 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY05_01635 PF08525 Opacity-associated protein A N-terminal motif HPY05_01635 PF04225 Opacity-associated protein A LysM-like domain HPY05_01640 PF00892 EamA-like transporter family HPY05_01645 PF13673 Acetyltransferase (GNAT) domain HPY05_01650 PF00271 Helicase conserved C-terminal domain HPY05_01650 PF03880 DbpA RNA binding domain HPY05_01650 PF00270 DEAD/DEAH box helicase HPY05_01660 PF02872 5'-nucleotidase, C-terminal domain HPY05_01660 PF00149 Calcineurin-like phosphoesterase HPY05_01665 PF14824 Sirohaem biosynthesis protein central HPY05_01665 PF10414 Sirohaem synthase dimerisation region HPY05_01665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY05_01670 PF01507 Phosphoadenosine phosphosulfate reductase family HPY05_01675 PF00009 Elongation factor Tu GTP binding domain HPY05_01700 PF00005 ABC transporter HPY05_01710 PF10795 Protein of unknown function (DUF2607) HPY05_01715 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HPY05_01720 PF01625 Peptide methionine sulfoxide reductase HPY05_01725 PF17243 POTRA domain TamA domain 1 HPY05_01725 PF07244 Surface antigen variable number repeat HPY05_01725 PF01103 Surface antigen HPY05_01730 PF04357 TamB, inner membrane protein subunit of TAM complex HPY05_01735 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like HPY05_01740 PF00719 Inorganic pyrophosphatase HPY05_01745 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HPY05_01750 PF08245 Mur ligase middle domain HPY05_01750 PF02875 Mur ligase family, glutamate ligase domain HPY05_01750 PF01225 Mur ligase family, catalytic domain HPY05_01755 PF02441 Flavoprotein HPY05_01765 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_01770 PF00005 ABC transporter HPY05_01775 PF04751 Protein of unknown function (DUF615) HPY05_01780 PF01523 Putative modulator of DNA gyrase HPY05_01785 PF00571 CBS domain HPY05_01785 PF01769 Divalent cation transporter HPY05_01785 PF03448 MgtE intracellular N domain HPY05_01790 PF00381 PTS HPr component phosphorylation site HPY05_01795 PF03668 P-loop ATPase protein family HPY05_01800 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY05_01805 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY05_01810 PF04552 Sigma-54, DNA binding domain HPY05_01810 PF04963 Sigma-54 factor, core binding domain HPY05_01810 PF00309 Sigma-54 factor, Activator interacting domain (AID) HPY05_01815 PF00005 ABC transporter HPY05_01815 PF12399 Branched-chain amino acid ATP-binding cassette transporter HPY05_01820 PF03968 OstA-like protein HPY05_01835 PF01380 SIS domain HPY05_01835 PF00571 CBS domain HPY05_01840 PF01699 Sodium/calcium exchanger protein HPY05_01845 PF00005 ABC transporter HPY05_01850 PF02405 Permease MlaE HPY05_01855 PF02470 MlaD protein HPY05_01860 PF05494 MlaC protein HPY05_01870 PF01722 BolA-like protein HPY05_01875 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY05_01880 PF01553 Acyltransferase HPY05_01885 PF01042 Endoribonuclease L-PSP HPY05_01890 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HPY05_01890 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HPY05_01895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY05_01895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY05_01900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY05_01900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY05_01905 PF02562 PhoH-like protein HPY05_01905 PF13638 PIN domain HPY05_01915 PF00271 Helicase conserved C-terminal domain HPY05_01915 PF12137 RNA polymerase recycling family C-terminal HPY05_01915 PF18339 RapA N-terminal Tudor like domain 1 HPY05_01915 PF00176 SNF2 family N-terminal domain HPY05_01915 PF18337 RapA N-terminal Tudor like domain HPY05_01920 PF00849 RNA pseudouridylate synthase HPY05_01925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY05_01925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY05_01930 PF08264 Anticodon-binding domain of tRNA HPY05_01930 PF00133 tRNA synthetases class I (I, L, M and V) HPY05_01930 PF10458 Valyl tRNA synthetase tRNA binding arm HPY05_01935 PF04364 DNA polymerase III chi subunit, HolC HPY05_01940 PF00883 Cytosol aminopeptidase family, catalytic domain HPY05_01940 PF02789 Cytosol aminopeptidase family, N-terminal domain HPY05_01945 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY05_01950 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY05_01965 PF00072 Response regulator receiver domain HPY05_02005 PF00694 Aconitase C-terminal domain HPY05_02010 PF00330 Aconitase family (aconitate hydratase) HPY05_02015 PF00180 Isocitrate/isopropylmalate dehydrogenase HPY05_02020 PF08502 LeuA allosteric (dimerisation) domain HPY05_02020 PF00682 HMGL-like HPY05_02030 PF01569 PAP2 superfamily HPY05_02040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_02040 PF03466 LysR substrate binding domain HPY05_02045 PF00501 AMP-binding enzyme HPY05_02050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY05_02050 PF00205 Thiamine pyrophosphate enzyme, central domain HPY05_02050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY05_02055 PF10369 Small subunit of acetolactate synthase HPY05_02060 PF01842 ACT domain HPY05_02060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY05_02060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY05_02065 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HPY05_02070 PF01812 5-formyltetrahydrofolate cyclo-ligase family HPY05_02080 PF05164 Cell division protein ZapA HPY05_02085 PF03695 Uncharacterised protein family (UPF0149) HPY05_02090 PF01494 FAD binding domain HPY05_02095 PF01494 FAD binding domain HPY05_02110 PF03937 Flavinator of succinate dehydrogenase HPY05_02120 PF02910 Fumarate reductase flavoprotein C-term HPY05_02120 PF00890 FAD binding domain HPY05_02125 PF08281 Sigma-70, region 4 HPY05_02125 PF04542 Sigma-70 region 2 HPY05_02130 PF03873 Anti sigma-E protein RseA, C-terminal domain HPY05_02130 PF03872 Anti sigma-E protein RseA, N-terminal domain HPY05_02135 PF03888 MucB/RseB N-terminal domain HPY05_02135 PF17188 MucB/RseB C-terminal domain HPY05_02145 PF00009 Elongation factor Tu GTP binding domain HPY05_02145 PF00679 Elongation factor G C-terminus HPY05_02145 PF06421 GTP-binding protein LepA C-terminus HPY05_02145 PF03144 Elongation factor Tu domain 2 HPY05_02150 PF10502 Signal peptidase, peptidase S26 HPY05_02155 PF14622 Ribonuclease-III-like HPY05_02155 PF00035 Double-stranded RNA binding motif HPY05_02160 PF01926 50S ribosome-binding GTPase HPY05_02160 PF07650 KH domain HPY05_02165 PF11967 Recombination protein O N terminal HPY05_02165 PF02565 Recombination protein O C terminal HPY05_02170 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HPY05_02175 PF01648 4'-phosphopantetheinyl transferase superfamily HPY05_02190 PF00990 Diguanylate cyclase, GGDEF domain HPY05_02195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_02195 PF00512 His Kinase A (phospho-acceptor) domain HPY05_02195 PF01627 Hpt domain HPY05_02195 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY05_02195 PF00672 HAMP domain HPY05_02195 PF00072 Response regulator receiver domain HPY05_02200 PF05958 tRNA (Uracil-5-)-methyltransferase HPY05_02200 PF01938 TRAM domain HPY05_02205 PF13291 ACT domain HPY05_02205 PF04607 Region found in RelA / SpoT proteins HPY05_02205 PF02824 TGS domain HPY05_02210 PF03819 MazG nucleotide pyrophosphohydrolase domain HPY05_02215 PF00117 Glutamine amidotransferase class-I HPY05_02215 PF06418 CTP synthase N-terminus HPY05_02220 PF00113 Enolase, C-terminal TIM barrel domain HPY05_02220 PF03952 Enolase, N-terminal domain HPY05_02225 PF01966 HD domain HPY05_02225 PF01743 Poly A polymerase head domain HPY05_02225 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY05_02230 PF13401 AAA domain HPY05_02230 PF01471 Putative peptidoglycan binding domain HPY05_02240 PF08239 Bacterial SH3 domain HPY05_02245 PF01384 Phosphate transporter family HPY05_02250 PF01865 Protein of unknown function DUF47 HPY05_02255 PF01928 CYTH domain HPY05_02260 PF02743 Cache domain HPY05_02260 PF00672 HAMP domain HPY05_02260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_02265 PF03710 Glutamate-ammonia ligase adenylyltransferase HPY05_02265 PF08335 GlnD PII-uridylyltransferase HPY05_02270 PF01467 Cytidylyltransferase-like HPY05_02270 PF00294 pfkB family carbohydrate kinase HPY05_02275 PF02321 Outer membrane efflux protein HPY05_02280 PF00293 NUDIX domain HPY05_02285 PF06853 Protein of unknown function (DUF1249) HPY05_02290 PF00149 Calcineurin-like phosphoesterase HPY05_02295 PF05728 Uncharacterised protein family (UPF0227) HPY05_02300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_02300 PF01751 Toprim domain HPY05_02300 PF00204 DNA gyrase B HPY05_02300 PF00986 DNA gyrase B subunit, carboxyl terminus HPY05_02305 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY05_02305 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY05_02310 PF03884 DNA gyrase inhibitor YacG HPY05_02315 PF07072 Cell division protein HPY05_02320 PF01121 Dephospho-CoA kinase HPY05_02325 PF06750 Bacterial Peptidase A24 N-terminal domain HPY05_02325 PF01478 Type IV leader peptidase family HPY05_02330 PF00482 Type II secretion system (T2SS), protein F HPY05_02335 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HPY05_02335 PF00437 Type II/IV secretion system protein HPY05_02340 PF07963 Prokaryotic N-terminal methylation motif HPY05_02340 PF00114 Pilin (bacterial filament) HPY05_02345 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HPY05_02345 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HPY05_02350 PF01510 N-acetylmuramoyl-L-alanine amidase HPY05_02355 PF00258 Flavodoxin HPY05_02360 PF00589 Phage integrase family HPY05_02360 PF02899 Phage integrase, N-terminal SAM-like domain HPY05_02365 PF13098 Thioredoxin-like domain HPY05_02365 PF10411 Disulfide bond isomerase protein N-terminus HPY05_02370 PF01368 DHH family HPY05_02370 PF02272 DHHA1 domain HPY05_02370 PF17768 RecJ OB domain HPY05_02375 PF00392 Bacterial regulatory proteins, gntR family HPY05_02375 PF07729 FCD domain HPY05_02380 PF00456 Transketolase, thiamine diphosphate binding domain HPY05_02380 PF17831 Pyruvate dehydrogenase E1 component middle domain HPY05_02385 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY05_02385 PF00364 Biotin-requiring enzyme HPY05_02385 PF02817 e3 binding domain HPY05_02390 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY05_02390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY05_02400 PF01795 MraW methylase family HPY05_02405 PF04999 Cell division protein FtsL HPY05_02410 PF03717 Penicillin-binding Protein dimerisation domain HPY05_02410 PF00905 Penicillin binding protein transpeptidase domain HPY05_02415 PF01225 Mur ligase family, catalytic domain HPY05_02415 PF02875 Mur ligase family, glutamate ligase domain HPY05_02415 PF08245 Mur ligase middle domain HPY05_02420 PF01225 Mur ligase family, catalytic domain HPY05_02420 PF02875 Mur ligase family, glutamate ligase domain HPY05_02420 PF08245 Mur ligase middle domain HPY05_02425 PF00953 Glycosyl transferase family 4 HPY05_02425 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HPY05_02430 PF02875 Mur ligase family, glutamate ligase domain HPY05_02430 PF08245 Mur ligase middle domain HPY05_02435 PF01098 Cell cycle protein HPY05_02440 PF03033 Glycosyltransferase family 28 N-terminal domain HPY05_02440 PF04101 Glycosyltransferase family 28 C-terminal domain HPY05_02445 PF01225 Mur ligase family, catalytic domain HPY05_02445 PF02875 Mur ligase family, glutamate ligase domain HPY05_02445 PF08245 Mur ligase middle domain HPY05_02450 PF08478 POTRA domain, FtsQ-type HPY05_02450 PF03799 Cell division protein FtsQ HPY05_02455 PF02491 SHS2 domain inserted in FTSA HPY05_02460 PF00091 Tubulin/FtsZ family, GTPase domain HPY05_02460 PF12327 FtsZ family, C-terminal domain HPY05_02465 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HPY05_02475 PF07516 SecA Wing and Scaffold domain HPY05_02475 PF01043 SecA preprotein cross-linking domain HPY05_02475 PF07517 SecA DEAD-like domain HPY05_02475 PF02810 SEC-C motif HPY05_02480 PF00293 NUDIX domain HPY05_02485 PF01113 Dihydrodipicolinate reductase, N-terminus HPY05_02485 PF05173 Dihydrodipicolinate reductase, C-terminus HPY05_02495 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HPY05_02495 PF00117 Glutamine amidotransferase class-I HPY05_02500 PF02142 MGS-like domain HPY05_02500 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HPY05_02500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HPY05_02520 PF01925 Sulfite exporter TauE/SafE HPY05_02525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_02525 PF03466 LysR substrate binding domain HPY05_02530 PF03458 UPF0126 domain HPY05_02535 PF01497 Periplasmic binding protein HPY05_02545 PF01048 Phosphorylase superfamily HPY05_02555 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY05_02555 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY05_02560 PF00310 Glutamine amidotransferases class-II HPY05_02560 PF04898 Glutamate synthase central domain HPY05_02560 PF01645 Conserved region in glutamate synthase HPY05_02560 PF01493 GXGXG motif HPY05_02565 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY05_02565 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY05_02570 PF04898 Glutamate synthase central domain HPY05_02570 PF00310 Glutamine amidotransferases class-II HPY05_02570 PF01493 GXGXG motif HPY05_02570 PF01645 Conserved region in glutamate synthase HPY05_02575 PF16199 Radical_SAM C-terminal domain HPY05_02575 PF04055 Radical SAM superfamily HPY05_02580 PF00563 EAL domain HPY05_02580 PF01590 GAF domain HPY05_02580 PF00990 Diguanylate cyclase, GGDEF domain HPY05_02580 PF00360 Phytochrome region HPY05_02585 PF01627 Hpt domain HPY05_02585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_02585 PF00072 Response regulator receiver domain HPY05_02585 PF00512 His Kinase A (phospho-acceptor) domain HPY05_02585 PF18415 Histidine kinase receptor ArcB trans-membrane domain HPY05_02585 PF00989 PAS fold HPY05_02590 PF00486 Transcriptional regulatory protein, C terminal HPY05_02590 PF00072 Response regulator receiver domain HPY05_02600 PF03737 Aldolase/RraA HPY05_02615 PF13840 ACT domain HPY05_02615 PF01842 ACT domain HPY05_02615 PF00742 Homoserine dehydrogenase HPY05_02615 PF03447 Homoserine dehydrogenase, NAD binding domain HPY05_02615 PF00696 Amino acid kinase family HPY05_02620 PF08544 GHMP kinases C terminal HPY05_02620 PF00288 GHMP kinases N terminal domain HPY05_02625 PF14821 Threonine synthase N terminus HPY05_02625 PF00291 Pyridoxal-phosphate dependent enzyme HPY05_02630 PF01228 Glycine radical HPY05_02635 PF01261 Xylose isomerase-like TIM barrel HPY05_02640 PF03167 Uracil DNA glycosylase superfamily HPY05_02655 PF01235 Sodium:alanine symporter family HPY05_02660 PF03883 Peroxide stress protein YaaA HPY05_02670 PF01026 TatD related DNase HPY05_02675 PF01773 Na+ dependent nucleoside transporter N-terminus HPY05_02675 PF07662 Na+ dependent nucleoside transporter C-terminus HPY05_02675 PF07670 Nucleoside recognition HPY05_02685 PF01791 DeoC/LacD family aldolase HPY05_02690 PF02885 Glycosyl transferase family, helical bundle domain HPY05_02690 PF00591 Glycosyl transferase family, a/b domain HPY05_02690 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HPY05_02695 PF01676 Metalloenzyme superfamily HPY05_02700 PF01048 Phosphorylase superfamily HPY05_02710 PF18429 Domain of unknown function (DUF5609) HPY05_02720 PF18073 Rubredoxin metal binding domain HPY05_02725 PF00679 Elongation factor G C-terminus HPY05_02725 PF14492 Elongation Factor G, domain II HPY05_02725 PF03764 Elongation factor G, domain IV HPY05_02725 PF00009 Elongation factor Tu GTP binding domain HPY05_02725 PF03144 Elongation factor Tu domain 2 HPY05_02730 PF00501 AMP-binding enzyme HPY05_02735 PF00072 Response regulator receiver domain HPY05_02745 PF16353 Domain of unknown function(DUF4981) HPY05_02745 PF02929 Beta galactosidase small chain HPY05_02745 PF00703 Glycosyl hydrolases family 2 HPY05_02745 PF02837 Glycosyl hydrolases family 2, sugar binding domain HPY05_02745 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HPY05_02750 PF00356 Bacterial regulatory proteins, lacI family HPY05_02755 PF01588 Putative tRNA binding domain HPY05_02765 PF01544 CorA-like Mg2+ transporter protein HPY05_02770 PF02080 TrkA-C domain HPY05_02770 PF18030 RimK PreATP-grasp domain HPY05_02770 PF08443 RimK-like ATP-grasp domain HPY05_02775 PF00583 Acetyltransferase (GNAT) family HPY05_02785 PF14602 Hexapeptide repeat of succinyl-transferase HPY05_02785 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HPY05_02790 PF07130 YebG protein HPY05_02805 PF17946 RecC C-terminal domain HPY05_02810 PF13361 UvrD-like helicase C-terminal domain HPY05_02810 PF00580 UvrD/REP helicase N-terminal domain HPY05_02810 PF12705 PD-(D/E)XK nuclease superfamily HPY05_02815 PF13538 UvrD-like helicase C-terminal domain HPY05_02825 PF00696 Amino acid kinase family HPY05_02825 PF00583 Acetyltransferase (GNAT) family HPY05_02835 PF06725 3D domain HPY05_02835 PF03562 MltA specific insert domain HPY05_02840 PF00899 ThiF family HPY05_02845 PF02657 Fe-S metabolism associated domain HPY05_02850 PF00266 Aminotransferase class-V HPY05_02855 PF01965 DJ-1/PfpI family HPY05_02860 PF08546 Ketopantoate reductase PanE/ApbA C terminal HPY05_02860 PF02558 Ketopantoate reductase PanE/ApbA HPY05_02865 PF03502 Nucleoside-specific channel-forming protein, Tsx HPY05_02875 PF04542 Sigma-70 region 2 HPY05_02875 PF04545 Sigma-70, region 4 HPY05_02885 PF07690 Major Facilitator Superfamily HPY05_02890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY05_02900 PF05175 Methyltransferase small domain HPY05_02905 PF01722 BolA-like protein HPY05_02910 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HPY05_02910 PF11973 NQRA C-terminal domain HPY05_02915 PF03116 NQR2, RnfD, RnfE family HPY05_02920 PF04205 FMN-binding domain HPY05_02925 PF02508 Rnf-Nqr subunit, membrane protein HPY05_02930 PF02508 Rnf-Nqr subunit, membrane protein HPY05_02935 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY05_02935 PF00175 Oxidoreductase NAD-binding domain HPY05_02935 PF00970 Oxidoreductase FAD-binding domain HPY05_02940 PF02424 ApbE family HPY05_02950 PF11798 IMS family HHH motif HPY05_02950 PF00817 impB/mucB/samB family HPY05_02960 PF00990 Diguanylate cyclase, GGDEF domain HPY05_02960 PF17158 Membrane-associated sensor, integral membrane domain HPY05_02965 PF00209 Sodium:neurotransmitter symporter family HPY05_02970 PF01609 Transposase DDE domain HPY05_02970 PF13006 Insertion element 4 transposase N-terminal HPY05_02980 PF08443 RimK-like ATP-grasp domain HPY05_02980 PF18030 RimK PreATP-grasp domain HPY05_02985 PF08443 RimK-like ATP-grasp domain HPY05_02985 PF18030 RimK PreATP-grasp domain HPY05_02990 PF07687 Peptidase dimerisation domain HPY05_02990 PF01546 Peptidase family M20/M25/M40 HPY05_02995 PF00860 Permease family HPY05_03000 PF00156 Phosphoribosyl transferase domain HPY05_03010 PF07417 Sigma factor-binding transcriptional regulator Crl HPY05_03015 PF00696 Amino acid kinase family HPY05_03015 PF01472 PUA domain HPY05_03020 PF00171 Aldehyde dehydrogenase family HPY05_03025 PF03477 ATP cone domain HPY05_03030 PF01872 RibD C-terminal domain HPY05_03030 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY05_03035 PF00677 Lumazine binding domain HPY05_03040 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY05_03040 PF00925 GTP cyclohydrolase II HPY05_03045 PF00885 6,7-dimethyl-8-ribityllumazine synthase HPY05_03050 PF01029 NusB family HPY05_03055 PF02769 AIR synthase related protein, C-terminal domain HPY05_03055 PF00586 AIR synthase related protein, N-terminal domain HPY05_03060 PF04608 Phosphatidylglycerophosphatase A HPY05_03065 PF11944 Protein of unknown function (DUF3461) HPY05_03070 PF01909 Nucleotidyltransferase domain HPY05_03070 PF01966 HD domain HPY05_03070 PF08335 GlnD PII-uridylyltransferase HPY05_03075 PF00557 Metallopeptidase family M24 HPY05_03080 PF00318 Ribosomal protein S2 HPY05_03085 PF00889 Elongation factor TS HPY05_03090 PF00696 Amino acid kinase family HPY05_03095 PF01765 Ribosome recycling factor HPY05_03100 PF01255 Putative undecaprenyl diphosphate synthase HPY05_03110 PF13288 DXP reductoisomerase C-terminal domain HPY05_03110 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HPY05_03110 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HPY05_03115 PF17820 PDZ domain HPY05_03115 PF02163 Peptidase family M50 HPY05_03120 PF07244 Surface antigen variable number repeat HPY05_03120 PF01103 Surface antigen HPY05_03125 PF03938 Outer membrane protein (OmpH-like) HPY05_03130 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HPY05_03130 PF00132 Bacterial transferase hexapeptide (six repeats) HPY05_03135 PF07977 FabA-like domain HPY05_03140 PF00132 Bacterial transferase hexapeptide (six repeats) HPY05_03140 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HPY05_03145 PF02684 Lipid-A-disaccharide synthetase HPY05_03150 PF01351 Ribonuclease HII HPY05_03155 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HPY05_03155 PF02811 PHP domain HPY05_03155 PF01336 OB-fold nucleic acid binding domain HPY05_03155 PF14579 Helix-hairpin-helix motif HPY05_03155 PF07733 Bacterial DNA polymerase III alpha NTPase domain HPY05_03160 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HPY05_03165 PF09179 TilS substrate binding domain HPY05_03165 PF01171 PP-loop family HPY05_03165 PF11734 TilS substrate C-terminal domain HPY05_03170 PF00034 Cytochrome c HPY05_03175 PF05870 Phenolic acid decarboxylase (PAD) HPY05_03180 PF00543 Nitrogen regulatory protein P-II HPY05_03185 PF03372 Endonuclease/Exonuclease/phosphatase family HPY05_03190 PF01476 LysM domain HPY05_03190 PF01464 Transglycosylase SLT domain HPY05_03195 PF00753 Metallo-beta-lactamase superfamily HPY05_03195 PF16123 Hydroxyacylglutathione hydrolase C-terminus HPY05_03200 PF08241 Methyltransferase domain HPY05_03205 PF00075 RNase H HPY05_03210 PF00929 Exonuclease HPY05_03220 PF02770 Acyl-CoA dehydrogenase, middle domain HPY05_03220 PF09317 Domain of unknown function (DUF1974) HPY05_03220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY05_03220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY05_03225 PF13580 SIS domain HPY05_03230 PF13230 Glutamine amidotransferases class-II HPY05_03235 PF00551 Formyl transferase HPY05_03240 PF02769 AIR synthase related protein, C-terminal domain HPY05_03240 PF00586 AIR synthase related protein, N-terminal domain HPY05_03250 PF08448 PAS fold HPY05_03250 PF00990 Diguanylate cyclase, GGDEF domain HPY05_03255 PF01479 S4 domain HPY05_03255 PF00849 RNA pseudouridylate synthase HPY05_03260 PF01713 Smr domain HPY05_03280 PF03173 Putative carbohydrate binding domain HPY05_03280 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HPY05_03280 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY05_03280 PF02838 Glycosyl hydrolase family 20, domain 2 HPY05_03295 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY05_03300 PF01389 OmpA-like transmembrane domain HPY05_03300 PF00691 OmpA family HPY05_03310 PF07715 TonB-dependent Receptor Plug Domain HPY05_03315 PF08021 Siderophore-interacting FAD-binding domain HPY05_03315 PF04954 Siderophore-interacting protein HPY05_03320 PF00668 Condensation domain HPY05_03320 PF08242 Methyltransferase domain HPY05_03320 PF00501 AMP-binding enzyme HPY05_03320 PF00550 Phosphopantetheine attachment site HPY05_03355 PF01584 CheW-like domain HPY05_03355 PF00072 Response regulator receiver domain HPY05_03360 PF03705 CheR methyltransferase, all-alpha domain HPY05_03360 PF01739 CheR methyltransferase, SAM binding domain HPY05_03365 PF00460 Flagella basal body rod protein HPY05_03370 PF00460 Flagella basal body rod protein HPY05_03370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY05_03375 PF13861 FlgD Tudor-like domain HPY05_03375 PF03963 Flagellar hook capping protein - N-terminal region HPY05_03375 PF13860 FlgD Ig-like domain HPY05_03380 PF07559 Flagellar basal body protein FlaE HPY05_03380 PF00460 Flagella basal body rod protein HPY05_03380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY05_03385 PF00460 Flagella basal body rod protein HPY05_03385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY05_03390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY05_03390 PF00460 Flagella basal body rod protein HPY05_03395 PF02107 Flagellar L-ring protein HPY05_03400 PF02119 Flagellar P-ring protein HPY05_03405 PF10135 Rod binding protein HPY05_03405 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HPY05_03410 PF07196 Flagellin hook IN motif HPY05_03410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY05_03420 PF07196 Flagellin hook IN motif HPY05_03420 PF00700 Bacterial flagellin C-terminal helical region HPY05_03420 PF00669 Bacterial flagellin N-terminal helical region HPY05_03425 PF00669 Bacterial flagellin N-terminal helical region HPY05_03425 PF07196 Flagellin hook IN motif HPY05_03425 PF00700 Bacterial flagellin C-terminal helical region HPY05_03510 PF01926 50S ribosome-binding GTPase HPY05_03510 PF06071 Protein of unknown function (DUF933) HPY05_03515 PF01195 Peptidyl-tRNA hydrolase HPY05_03520 PF14572 Phosphoribosyl synthetase-associated domain HPY05_03520 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HPY05_03525 PF00288 GHMP kinases N terminal domain HPY05_03525 PF08544 GHMP kinases C terminal HPY05_03530 PF03550 Outer membrane lipoprotein LolB HPY05_03535 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HPY05_03535 PF01488 Shikimate / quinate 5-dehydrogenase HPY05_03535 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HPY05_03540 PF03462 PCRF domain HPY05_03540 PF00472 RF-1 domain HPY05_03545 PF13847 Methyltransferase domain HPY05_03545 PF17827 PrmC N-terminal domain HPY05_03550 PF04247 Invasion gene expression up-regulator, SirB HPY05_03555 PF13369 Transglutaminase-like superfamily HPY05_03560 PF00793 DAHP synthetase I family HPY05_03565 PF00149 Calcineurin-like phosphoesterase HPY05_03565 PF02872 5'-nucleotidase, C-terminal domain HPY05_03570 PF04073 Aminoacyl-tRNA editing domain HPY05_03575 PF00860 Permease family HPY05_03590 PF03358 NADPH-dependent FMN reductase HPY05_03595 PF03960 ArsC family HPY05_03600 PF13181 Tetratricopeptide repeat HPY05_03600 PF01435 Peptidase family M48 HPY05_03610 PF01594 AI-2E family transporter HPY05_03615 PF00672 HAMP domain HPY05_03615 PF02743 Cache domain HPY05_03615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_03620 PF00578 AhpC/TSA family HPY05_03630 PF00701 Dihydrodipicolinate synthetase family HPY05_03635 PF06804 NlpB/DapX lipoprotein HPY05_03645 PF02557 D-alanyl-D-alanine carboxypeptidase HPY05_03650 PF01546 Peptidase family M20/M25/M40 HPY05_03650 PF07687 Peptidase dimerisation domain HPY05_03655 PF03960 ArsC family HPY05_03670 PF11143 Protein of unknown function (DUF2919) HPY05_03675 PF04261 Dyp-type peroxidase family HPY05_03680 PF00700 Bacterial flagellin C-terminal helical region HPY05_03680 PF07196 Flagellin hook IN motif HPY05_03680 PF00669 Bacterial flagellin N-terminal helical region HPY05_03685 PF00669 Bacterial flagellin N-terminal helical region HPY05_03685 PF07196 Flagellin hook IN motif HPY05_03685 PF00700 Bacterial flagellin C-terminal helical region HPY05_03690 PF00669 Bacterial flagellin N-terminal helical region HPY05_03690 PF00700 Bacterial flagellin C-terminal helical region HPY05_03690 PF07196 Flagellin hook IN motif HPY05_03695 PF03646 FlaG protein HPY05_03700 PF07196 Flagellin hook IN motif HPY05_03700 PF02465 Flagellar hook-associated protein 2 N-terminus HPY05_03700 PF07195 Flagellar hook-associated protein 2 C-terminus HPY05_03710 PF02561 Flagellar protein FliS HPY05_03715 PF06490 Flagellar regulatory protein FleQ HPY05_03715 PF00158 Sigma-54 interaction domain HPY05_03715 PF02954 Bacterial regulatory protein, Fis family HPY05_03720 PF00512 His Kinase A (phospho-acceptor) domain HPY05_03720 PF13493 Domain of unknown function (DUF4118) HPY05_03720 PF13426 PAS domain HPY05_03720 PF08447 PAS fold HPY05_03720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_03720 PF00989 PAS fold HPY05_03725 PF02954 Bacterial regulatory protein, Fis family HPY05_03725 PF00072 Response regulator receiver domain HPY05_03725 PF00158 Sigma-54 interaction domain HPY05_03730 PF02049 Flagellar hook-basal body complex protein FliE HPY05_03735 PF08345 Flagellar M-ring protein C-terminal HPY05_03735 PF01514 Secretory protein of YscJ/FliF family HPY05_03740 PF14841 FliG middle domain HPY05_03740 PF14842 FliG N-terminal domain HPY05_03740 PF01706 FliG C-terminal domain HPY05_03745 PF02108 Flagellar assembly protein FliH HPY05_03750 PF18269 T3SS EscN ATPase C-terminal domain HPY05_03750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY05_03770 PF03748 Flagellar basal body-associated protein FliL HPY05_03775 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY05_03775 PF02154 Flagellar motor switch protein FliM HPY05_03780 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY05_03785 PF04347 Flagellar biosynthesis protein, FliO HPY05_03790 PF00813 FliP family HPY05_03795 PF01313 Bacterial export proteins, family 3 HPY05_03800 PF01311 Bacterial export proteins, family 1 HPY05_03805 PF01312 FlhB HrpN YscU SpaS Family HPY05_03810 PF01713 Smr domain HPY05_03815 PF05175 Methyltransferase small domain HPY05_03820 PF01264 Chorismate synthase HPY05_03825 PF03458 UPF0126 domain HPY05_03830 PF04315 Elongation factor P hydroxylase HPY05_03835 PF08891 YfcL protein HPY05_03840 PF03358 NADPH-dependent FMN reductase HPY05_03845 PF01266 FAD dependent oxidoreductase HPY05_03845 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HPY05_03850 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY05_03850 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY05_03855 PF11890 Domain of unknown function (DUF3410) HPY05_03855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY05_03855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY05_03860 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY05_03860 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY05_03865 PF01475 Ferric uptake regulator family HPY05_03875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_03875 PF03466 LysR substrate binding domain HPY05_03880 PF03788 LrgA family HPY05_03885 PF04172 LrgB-like family HPY05_03890 PF00258 Flavodoxin HPY05_03900 PF12697 Alpha/beta hydrolase family HPY05_03905 PF03925 SeqA protein C-terminal domain HPY05_03905 PF17206 SeqA protein N-terminal domain HPY05_03910 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY05_03910 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY05_03910 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY05_03910 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY05_03920 PF01784 NIF3 (NGG1p interacting factor 3) HPY05_03925 PF00285 Citrate synthase, C-terminal domain HPY05_03930 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY05_03935 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY05_03940 PF00890 FAD binding domain HPY05_03940 PF02910 Fumarate reductase flavoprotein C-term HPY05_03945 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY05_03950 PF16078 2-oxoglutarate dehydrogenase N-terminus HPY05_03950 PF16870 2-oxoglutarate dehydrogenase C-terminal HPY05_03950 PF00676 Dehydrogenase E1 component HPY05_03950 PF02779 Transketolase, pyrimidine binding domain HPY05_03955 PF02817 e3 binding domain HPY05_03955 PF00364 Biotin-requiring enzyme HPY05_03955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY05_03960 PF00549 CoA-ligase HPY05_03960 PF08442 ATP-grasp domain HPY05_03965 PF02629 CoA binding domain HPY05_03965 PF00549 CoA-ligase HPY05_03970 PF00950 ABC 3 transport family HPY05_03975 PF00005 ABC transporter HPY05_03980 PF01297 Zinc-uptake complex component A periplasmic HPY05_03985 PF12833 Helix-turn-helix domain HPY05_03985 PF02311 AraC-like ligand binding domain HPY05_03990 PF04023 FeoA domain HPY05_03995 PF07670 Nucleoside recognition HPY05_03995 PF07664 Ferrous iron transport protein B C terminus HPY05_03995 PF02421 Ferrous iron transport protein B HPY05_04010 PF00750 tRNA synthetases class I (R) HPY05_04010 PF03485 Arginyl tRNA synthetase N terminal domain HPY05_04010 PF05746 DALR anticodon binding domain HPY05_04020 PF05193 Peptidase M16 inactive domain HPY05_04020 PF00675 Insulinase (Peptidase family M16) HPY05_04025 PF00300 Histidine phosphatase superfamily (branch 1) HPY05_04030 PF00771 FHIPEP family HPY05_04045 PF04542 Sigma-70 region 2 HPY05_04045 PF04539 Sigma-70 region 3 HPY05_04045 PF04545 Sigma-70, region 4 HPY05_04050 PF00072 Response regulator receiver domain HPY05_04055 PF04344 Chemotaxis phosphatase, CheZ HPY05_04060 PF02895 Signal transducing histidine kinase, homodimeric domain HPY05_04060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_04060 PF01627 Hpt domain HPY05_04060 PF00072 Response regulator receiver domain HPY05_04060 PF01584 CheW-like domain HPY05_04065 PF00072 Response regulator receiver domain HPY05_04065 PF01339 CheB methylesterase HPY05_04070 PF13614 AAA domain HPY05_04080 PF01584 CheW-like domain HPY05_04090 PF00005 ABC transporter HPY05_04095 PF03379 CcmB protein HPY05_04100 PF01578 Cytochrome C assembly protein HPY05_04105 PF04995 Heme exporter protein D (CcmD) HPY05_04110 PF03100 CcmE HPY05_04115 PF01578 Cytochrome C assembly protein HPY05_04115 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HPY05_04120 PF08534 Redoxin HPY05_04125 PF03918 Cytochrome C biogenesis protein HPY05_04135 PF04333 MlaA lipoprotein HPY05_04150 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY05_04150 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY05_04155 PF00462 Glutaredoxin HPY05_04160 PF01131 DNA topoisomerase HPY05_04160 PF01751 Toprim domain HPY05_04165 PF00850 Histone deacetylase domain HPY05_04180 PF11893 Domain of unknown function (DUF3413) HPY05_04180 PF00884 Sulfatase HPY05_04185 PF07208 Protein of unknown function (DUF1414) HPY05_04190 PF04245 37-kD nucleoid-associated bacterial protein HPY05_04200 PF03553 Na+/H+ antiporter family HPY05_04205 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY05_04205 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY05_04210 PF01914 MarC family integral membrane protein HPY05_04215 PF00171 Aldehyde dehydrogenase family HPY05_04215 PF00465 Iron-containing alcohol dehydrogenase HPY05_04225 PF00916 Sulfate permease family HPY05_04225 PF01740 STAS domain HPY05_04230 PF12111 Polyribonucleotide phosphorylase C terminal HPY05_04230 PF00575 S1 RNA binding domain HPY05_04230 PF10150 Ribonuclease E/G family HPY05_04235 PF00849 RNA pseudouridylate synthase HPY05_04235 PF01479 S4 domain HPY05_04240 PF02545 Maf-like protein HPY05_04245 PF02620 Large ribosomal RNA subunit accumulation protein YceD HPY05_04250 PF01783 Ribosomal L32p protein family HPY05_04255 PF02504 Fatty acid synthesis protein HPY05_04260 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY05_04260 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY05_04265 PF00698 Acyl transferase domain HPY05_04275 PF00550 Phosphopantetheine attachment site HPY05_04280 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY05_04280 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY05_04285 PF01063 Amino-transferase class IV HPY05_04290 PF02618 YceG-like family HPY05_04295 PF02223 Thymidylate kinase HPY05_04300 PF09115 DNA polymerase III, delta subunit, C terminal HPY05_04305 PF01026 TatD related DNase HPY05_04310 PF00367 phosphotransferase system, EIIB HPY05_04310 PF02378 Phosphotransferase system, EIIC HPY05_04320 PF00209 Sodium:neurotransmitter symporter family HPY05_04335 PF01734 Patatin-like phospholipase HPY05_04340 PF02887 Pyruvate kinase, alpha/beta domain HPY05_04340 PF00224 Pyruvate kinase, barrel domain HPY05_04345 PF00480 ROK family HPY05_04350 PF01584 CheW-like domain HPY05_04350 PF00072 Response regulator receiver domain HPY05_04365 PF13847 Methyltransferase domain HPY05_04375 PF01263 Aldose 1-epimerase HPY05_04380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY05_04380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY05_04385 PF01641 SelR domain HPY05_04395 PF07023 Protein of unknown function (DUF1315) HPY05_04400 PF00710 Asparaginase, N-terminal HPY05_04400 PF17763 Glutaminase/Asparaginase C-terminal domain HPY05_04405 PF01343 Peptidase family S49 HPY05_04410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY05_04410 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY05_04415 PF00551 Formyl transferase HPY05_04415 PF01842 ACT domain HPY05_04425 PF04851 Type III restriction enzyme, res subunit HPY05_04425 PF13307 Helicase C-terminal domain HPY05_04430 PF00814 Glycoprotease family HPY05_04445 PF00561 alpha/beta hydrolase fold HPY05_04450 PF13193 AMP-binding enzyme C-terminal domain HPY05_04450 PF00501 AMP-binding enzyme HPY05_04455 PF00570 HRDC domain HPY05_04455 PF01612 3'-5' exonuclease HPY05_04475 PF13286 Phosphohydrolase-associated domain HPY05_04475 PF01966 HD domain HPY05_04485 PF00155 Aminotransferase class I and II HPY05_04490 PF00425 chorismate binding enzyme HPY05_04495 PF16582 Middle domain of thiamine pyrophosphate HPY05_04495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY05_04495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY05_04500 PF12697 Alpha/beta hydrolase family HPY05_04505 PF00378 Enoyl-CoA hydratase/isomerase HPY05_04510 PF13378 Enolase C-terminal domain-like HPY05_04515 PF00501 AMP-binding enzyme HPY05_04515 PF13193 AMP-binding enzyme C-terminal domain HPY05_04520 PF03594 Benzoate membrane transport protein HPY05_04525 PF07690 Major Facilitator Superfamily HPY05_04545 PF04170 NlpE N-terminal domain HPY05_04550 PF03776 Septum formation topological specificity factor MinE HPY05_04555 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY05_04560 PF03775 Septum formation inhibitor MinC, C-terminal domain HPY05_04560 PF05209 Septum formation inhibitor MinC, N-terminal domain HPY05_04565 PF05166 YcgL domain HPY05_04570 PF13406 Transglycosylase SLT domain HPY05_04575 PF03466 LysR substrate binding domain HPY05_04575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_04580 PF07670 Nucleoside recognition HPY05_04580 PF07662 Na+ dependent nucleoside transporter C-terminus HPY05_04580 PF01773 Na+ dependent nucleoside transporter N-terminus HPY05_04585 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY05_04590 PF01568 Molydopterin dinucleotide binding domain HPY05_04590 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY05_04590 PF00384 Molybdopterin oxidoreductase HPY05_04600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_04600 PF03466 LysR substrate binding domain HPY05_04605 PF01494 FAD binding domain HPY05_04610 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HPY05_04620 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HPY05_04620 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HPY05_04665 PF00563 EAL domain HPY05_04665 PF00990 Diguanylate cyclase, GGDEF domain HPY05_04665 PF03707 Bacterial signalling protein N terminal repeat HPY05_04665 PF13188 PAS domain HPY05_04675 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HPY05_04680 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY05_04685 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HPY05_04690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY05_04695 PF02954 Bacterial regulatory protein, Fis family HPY05_04695 PF00072 Response regulator receiver domain HPY05_04695 PF00158 Sigma-54 interaction domain HPY05_04700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_04700 PF00512 His Kinase A (phospho-acceptor) domain HPY05_04710 PF05697 Bacterial trigger factor protein (TF) HPY05_04710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY05_04710 PF05698 Bacterial trigger factor protein (TF) C-terminus HPY05_04715 PF00574 Clp protease HPY05_04720 PF07724 AAA domain (Cdc48 subfamily) HPY05_04720 PF06689 ClpX C4-type zinc finger HPY05_04720 PF10431 C-terminal, D2-small domain, of ClpB protein HPY05_04725 PF00004 ATPase family associated with various cellular activities (AAA) HPY05_04725 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY05_04725 PF02190 ATP-dependent protease La (LON) substrate-binding domain HPY05_04730 PF00216 Bacterial DNA-binding protein HPY05_04735 PF13145 PPIC-type PPIASE domain HPY05_04745 PF02224 Cytidylate kinase HPY05_04750 PF00575 S1 RNA binding domain HPY05_04755 PF00216 Bacterial DNA-binding protein HPY05_04760 PF06305 Lipopolysaccharide assembly protein A domain HPY05_04765 PF18073 Rubredoxin metal binding domain HPY05_04770 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY05_04775 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HPY05_04785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_04785 PF03466 LysR substrate binding domain HPY05_04795 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY05_04795 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY05_04800 PF01037 Lrp/AsnC ligand binding domain HPY05_04805 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HPY05_04805 PF01580 FtsK/SpoIIIE family HPY05_04805 PF09397 Ftsk gamma domain HPY05_04805 PF17854 FtsK alpha domain HPY05_04810 PF02600 Disulfide bond formation protein DsbB HPY05_04815 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HPY05_04820 PF07840 FadR C-terminal domain HPY05_04820 PF00392 Bacterial regulatory proteins, gntR family HPY05_04830 PF00672 HAMP domain HPY05_04830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_04835 PF01230 HIT domain HPY05_04850 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HPY05_04850 PF13036 Peptidoglycan-synthase activator LpoB HPY05_04860 PF05728 Uncharacterised protein family (UPF0227) HPY05_04865 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY05_04880 PF16458 Beta-prism lectin HPY05_04880 PF12563 Hemolytic toxin N terminal HPY05_04880 PF07968 Leukocidin/Hemolysin toxin family HPY05_04890 PF02559 CarD-like/TRCF domain HPY05_04890 PF00271 Helicase conserved C-terminal domain HPY05_04890 PF17757 UvrB interaction domain HPY05_04890 PF03461 TRCF domain HPY05_04890 PF00270 DEAD/DEAH box helicase HPY05_04905 PF00005 ABC transporter HPY05_04910 PF02687 FtsX-like permease family HPY05_04910 PF12704 MacB-like periplasmic core domain HPY05_04920 PF00753 Metallo-beta-lactamase superfamily HPY05_04920 PF03772 Competence protein HPY05_04920 PF13567 Domain of unknown function (DUF4131) HPY05_04925 PF00005 ABC transporter HPY05_04925 PF00664 ABC transporter transmembrane region HPY05_04930 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HPY05_04935 PF03966 Trm112p-like protein HPY05_04940 PF02348 Cytidylyltransferase HPY05_04945 PF04293 SpoVR like protein HPY05_04950 PF04285 Protein of unknown function (DUF444) HPY05_04955 PF08298 PrkA AAA domain HPY05_04955 PF06798 PrkA serine protein kinase C-terminal domain HPY05_04960 PF13006 Insertion element 4 transposase N-terminal HPY05_04960 PF01609 Transposase DDE domain HPY05_04965 PF03887 YfbU domain HPY05_04975 PF04055 Radical SAM superfamily HPY05_04980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_04980 PF00672 HAMP domain HPY05_04980 PF12729 Four helix bundle sensory module for signal transduction HPY05_04990 PF01228 Glycine radical HPY05_04990 PF02901 Pyruvate formate lyase-like HPY05_05000 PF00005 ABC transporter HPY05_05005 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY05_05010 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_05015 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_05020 PF03372 Endonuclease/Exonuclease/phosphatase family HPY05_05025 PF10689 Protein of unknown function (DUF2496) HPY05_05030 PF07445 Primosomal replication protein priC HPY05_05035 PF01925 Sulfite exporter TauE/SafE HPY05_05040 PF13307 Helicase C-terminal domain HPY05_05040 PF06733 DEAD_2 HPY05_05050 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY05_05055 PF02810 SEC-C motif HPY05_05060 PF00563 EAL domain HPY05_05060 PF08668 HDOD domain HPY05_05065 PF00149 Calcineurin-like phosphoesterase HPY05_05070 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY05_05075 PF09190 DALR domain HPY05_05075 PF01406 tRNA synthetases class I (C) catalytic domain HPY05_05080 PF02075 Crossover junction endodeoxyribonuclease RuvC HPY05_05085 PF01330 RuvA N terminal domain HPY05_05085 PF07499 RuvA, C-terminal domain HPY05_05090 PF05491 RuvB C-terminal winged helix domain HPY05_05090 PF05496 Holliday junction DNA helicase RuvB P-loop domain HPY05_05090 PF17864 RuvB AAA lid domain HPY05_05095 PF01654 Cytochrome bd terminal oxidase subunit I HPY05_05100 PF02322 Cytochrome bd terminal oxidase subunit II HPY05_05105 PF08173 Membrane bound YbgT-like protein HPY05_05110 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HPY05_05115 PF03061 Thioesterase superfamily HPY05_05120 PF01618 MotA/TolQ/ExbB proton channel family HPY05_05125 PF02472 Biopolymer transport protein ExbD/TolR HPY05_05135 PF04052 TolB amino-terminal domain HPY05_05135 PF07676 WD40-like Beta Propeller Repeat HPY05_05140 PF00691 OmpA family HPY05_05150 PF02445 Quinolinate synthetase A protein HPY05_05160 PF09308 LuxQ, periplasmic HPY05_05160 PF00512 His Kinase A (phospho-acceptor) domain HPY05_05160 PF00072 Response regulator receiver domain HPY05_05160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_05165 PF06610 L-alanine exporter HPY05_05170 PF01238 Phosphomannose isomerase type I HPY05_05175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY05_05175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY05_05175 PF02378 Phosphotransferase system, EIIC HPY05_05180 PF12833 Helix-turn-helix domain HPY05_05190 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY05_05210 PF00171 Aldehyde dehydrogenase family HPY05_05215 PF02954 Bacterial regulatory protein, Fis family HPY05_05215 PF01590 GAF domain HPY05_05215 PF00158 Sigma-54 interaction domain HPY05_05220 PF09905 DNA-binding protein VF530 HPY05_05230 PF00875 DNA photolyase HPY05_05230 PF03441 FAD binding domain of DNA photolyase HPY05_05255 PF01381 Helix-turn-helix HPY05_05255 PF00717 Peptidase S24-like HPY05_05310 PF00817 impB/mucB/samB family HPY05_05310 PF13438 Domain of unknown function (DUF4113) HPY05_05310 PF11799 impB/mucB/samB family C-terminal domain HPY05_05315 PF00817 impB/mucB/samB family HPY05_05315 PF11798 IMS family HHH motif HPY05_05315 PF11799 impB/mucB/samB family C-terminal domain HPY05_05315 PF13438 Domain of unknown function (DUF4113) HPY05_05320 PF13438 Domain of unknown function (DUF4113) HPY05_05320 PF00817 impB/mucB/samB family HPY05_05320 PF11799 impB/mucB/samB family C-terminal domain HPY05_05325 PF00717 Peptidase S24-like HPY05_05365 PF05973 Phage derived protein Gp49-like (DUF891) HPY05_05410 PF10411 Disulfide bond isomerase protein N-terminus HPY05_05410 PF13098 Thioredoxin-like domain HPY05_05425 PF10502 Signal peptidase, peptidase S26 HPY05_05435 PF06834 TraU protein HPY05_05440 PF06986 Type-1V conjugative transfer system mating pair stabilisation HPY05_05470 PF13402 Peptidase M60, enhancin and enhancin-like HPY05_05470 PF17291 N-terminal domain of M60-like peptidases HPY05_05470 PF13322 Domain of unknown function (DUF4092) HPY05_05500 PF00576 HIUase/Transthyretin family HPY05_05505 PF03928 Haem-degrading HPY05_05515 PF11999 Protein of unknown function (DUF3494) HPY05_05515 PF02368 Bacterial Ig-like domain (group 2) HPY05_05520 PF12697 Alpha/beta hydrolase family HPY05_05525 PF05946 Toxin-coregulated pilus subunit TcpA HPY05_05525 PF07963 Prokaryotic N-terminal methylation motif HPY05_05560 PF00437 Type II/IV secretion system protein HPY05_05565 PF00482 Type II secretion system (T2SS), protein F HPY05_05570 PF01478 Type IV leader peptidase family HPY05_05570 PF06750 Bacterial Peptidase A24 N-terminal domain HPY05_05585 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family HPY05_05605 PF12561 ToxR activated gene A lipoprotein domain HPY05_05605 PF17945 Beta/Gamma crystallin HPY05_05620 PF12833 Helix-turn-helix domain HPY05_05630 PF18500 CadC C-terminal domain 1 HPY05_05630 PF00486 Transcriptional regulatory protein, C terminal HPY05_05635 PF00873 AcrB/AcrD/AcrF family HPY05_05650 PF01375 Heat-labile enterotoxin alpha chain HPY05_05680 PF00436 Single-strand binding protein family HPY05_05700 PF07728 AAA domain (dynein-related subfamily) HPY05_05700 PF08406 CbbQ/NirQ/NorQ C-terminal HPY05_05720 PF00092 von Willebrand factor type A domain HPY05_05725 PF04002 RadC-like JAB domain HPY05_05750 PF06122 Conjugative relaxosome accessory transposon protein HPY05_05765 PF05930 Prophage CP4-57 regulatory protein (AlpA) HPY05_05770 PF00589 Phage integrase family HPY05_05770 PF13356 Arm DNA-binding domain HPY05_05780 PF00873 AcrB/AcrD/AcrF family HPY05_05785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY05_05795 PF02470 MlaD protein HPY05_05800 PF04403 Paraquat-inducible protein A HPY05_05805 PF00924 Mechanosensitive ion channel HPY05_05805 PF05552 Conserved TM helix HPY05_05825 PF08362 YcdC-like protein, C-terminal region HPY05_05825 PF00440 Bacterial regulatory proteins, tetR family HPY05_05830 PF00171 Aldehyde dehydrogenase family HPY05_05835 PF07383 Protein of unknown function (DUF1496) HPY05_05845 PF00440 Bacterial regulatory proteins, tetR family HPY05_05845 PF16295 Tetracyclin repressor-like, C-terminal domain HPY05_05850 PF09317 Domain of unknown function (DUF1974) HPY05_05850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY05_05850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY05_05850 PF02770 Acyl-CoA dehydrogenase, middle domain HPY05_05855 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY05_05855 PF07055 Enoyl reductase FAD binding domain HPY05_05855 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY05_05860 PF01176 Translation initiation factor 1A / IF-1 HPY05_05865 PF04377 Arginine-tRNA-protein transferase, C terminus HPY05_05865 PF04376 Arginine-tRNA-protein transferase, N terminus HPY05_05870 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HPY05_05875 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY05_05880 PF10692 Protein of unknown function (DUF2498) HPY05_05885 PF01131 DNA topoisomerase HPY05_05885 PF01751 Toprim domain HPY05_05885 PF01396 Topoisomerase DNA binding C4 zinc finger HPY05_05885 PF08272 Topoisomerase I zinc-ribbon-like HPY05_05890 PF00483 Nucleotidyl transferase HPY05_05895 PF00534 Glycosyl transferases group 1 HPY05_05895 PF08323 Starch synthase catalytic domain HPY05_05915 PF04994 TfoX C-terminal domain HPY05_05915 PF04993 TfoX N-terminal domain HPY05_05920 PF00356 Bacterial regulatory proteins, lacI family HPY05_05925 PF02613 Nitrate reductase delta subunit HPY05_05930 PF00486 Transcriptional regulatory protein, C terminal HPY05_05930 PF00072 Response regulator receiver domain HPY05_05935 PF02698 DUF218 domain HPY05_05940 PF13847 Methyltransferase domain HPY05_05945 PF03882 MukF winged-helix domain HPY05_05945 PF17193 MukF C-terminal domain HPY05_05945 PF17192 MukF middle domain HPY05_05950 PF04288 MukE-like family HPY05_05955 PF04310 MukB N-terminal HPY05_05955 PF16330 MukB hinge domain HPY05_05960 PF01037 Lrp/AsnC ligand binding domain HPY05_05965 PF01810 LysE type translocator HPY05_05970 PF11842 Domain of unknown function (DUF3362) HPY05_05970 PF08497 Radical SAM N-terminal HPY05_05970 PF04055 Radical SAM superfamily HPY05_05975 PF00563 EAL domain HPY05_05975 PF08448 PAS fold HPY05_05975 PF00990 Diguanylate cyclase, GGDEF domain HPY05_05975 PF08447 PAS fold HPY05_05980 PF00675 Insulinase (Peptidase family M16) HPY05_05980 PF05193 Peptidase M16 inactive domain HPY05_05995 PF03466 LysR substrate binding domain HPY05_05995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_06000 PF08267 Cobalamin-independent synthase, N-terminal domain HPY05_06000 PF01717 Cobalamin-independent synthase, Catalytic domain HPY05_06010 PF03795 YCII-related domain HPY05_06015 PF03061 Thioesterase superfamily HPY05_06020 PF04279 Intracellular septation protein A HPY05_06030 PF02698 DUF218 domain HPY05_06035 PF01370 NAD dependent epimerase/dehydratase family HPY05_06045 PF01226 Formate/nitrite transporter HPY05_06050 PF06796 Periplasmic nitrate reductase protein NapE HPY05_06055 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY05_06060 PF00384 Molybdopterin oxidoreductase HPY05_06060 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY05_06060 PF01568 Molydopterin dinucleotide binding domain HPY05_06080 PF01368 DHH family HPY05_06080 PF02833 DHHA2 domain HPY05_06100 PF00005 ABC transporter HPY05_06105 PF00005 ABC transporter HPY05_06105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY05_06110 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_06110 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY05_06115 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_06120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY05_06125 PF02954 Bacterial regulatory protein, Fis family HPY05_06125 PF00158 Sigma-54 interaction domain HPY05_06130 PF04012 PspA/IM30 family HPY05_06145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY05_06145 PF00529 HlyD membrane-fusion protein of T1SS HPY05_06150 PF13533 Biotin-lipoyl like HPY05_06155 PF00873 AcrB/AcrD/AcrF family HPY05_06160 PF03352 Methyladenine glycosylase HPY05_06165 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY05_06170 PF13091 PLD-like domain HPY05_06170 PF13396 Phospholipase_D-nuclease N-terminal HPY05_06175 PF00209 Sodium:neurotransmitter symporter family HPY05_06180 PF00849 RNA pseudouridylate synthase HPY05_06185 PF01066 CDP-alcohol phosphatidyltransferase HPY05_06190 PF00005 ABC transporter HPY05_06195 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_06200 PF13416 Bacterial extracellular solute-binding protein HPY05_06210 PF06945 Protein of unknown function (DUF1289) HPY05_06220 PF03222 Tryptophan/tyrosine permease family HPY05_06230 PF03448 MgtE intracellular N domain HPY05_06230 PF01769 Divalent cation transporter HPY05_06230 PF00571 CBS domain HPY05_06235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_06235 PF00512 His Kinase A (phospho-acceptor) domain HPY05_06235 PF00072 Response regulator receiver domain HPY05_06235 PF09456 RcsC Alpha-Beta-Loop (ABL) HPY05_06240 PF00990 Diguanylate cyclase, GGDEF domain HPY05_06240 PF00563 EAL domain HPY05_06240 PF03707 Bacterial signalling protein N terminal repeat HPY05_06250 PF04151 Bacterial pre-peptidase C-terminal domain HPY05_06250 PF08453 Peptidase family M9 N-terminal HPY05_06250 PF01752 Collagenase HPY05_06260 PF12793 Sugar transport-related sRNA regulator N-term HPY05_06260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY05_06275 PF09009 Exotoxin A catalytic HPY05_06275 PF09102 Exotoxin A, targeting HPY05_06275 PF09101 Exotoxin A binding HPY05_06285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_06285 PF00672 HAMP domain HPY05_06285 PF12729 Four helix bundle sensory module for signal transduction HPY05_06295 PF00563 EAL domain HPY05_06295 PF00990 Diguanylate cyclase, GGDEF domain HPY05_06295 PF01590 GAF domain HPY05_06295 PF00360 Phytochrome region HPY05_06300 PF01386 Ribosomal L25p family HPY05_06305 PF00512 His Kinase A (phospho-acceptor) domain HPY05_06305 PF00989 PAS fold HPY05_06305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_06305 PF11808 Phosphate regulon sensor protein PhoR HPY05_06310 PF00486 Transcriptional regulatory protein, C terminal HPY05_06310 PF00072 Response regulator receiver domain HPY05_06325 PF01479 S4 domain HPY05_06325 PF00849 RNA pseudouridylate synthase HPY05_06330 PF07690 Major Facilitator Superfamily HPY05_06340 PF11066 Protein of unknown function (DUF2867) HPY05_06340 PF13460 NAD(P)H-binding HPY05_06345 PF01554 MatE HPY05_06350 PF00005 ABC transporter HPY05_06365 PF06965 Na+/H+ antiporter 1 HPY05_06370 PF00202 Aminotransferase class-III HPY05_06375 PF03435 Saccharopine dehydrogenase NADP binding domain HPY05_06375 PF16653 Saccharopine dehydrogenase C-terminal domain HPY05_06385 PF00691 OmpA family HPY05_06385 PF05736 OprF membrane domain HPY05_06390 PF02321 Outer membrane efflux protein HPY05_06460 PF03466 LysR substrate binding domain HPY05_06460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_06470 PF01863 Protein of unknown function DUF45 HPY05_06475 PF05971 RNA methyltransferase HPY05_06490 PF04204 Homoserine O-succinyltransferase HPY05_06510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY05_06525 PF17203 Single cache domain 3 HPY05_06525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_06525 PF00989 PAS fold HPY05_06525 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HPY05_06530 PF12431 Transcriptional regulator HPY05_06530 PF00072 Response regulator receiver domain HPY05_06540 PF00072 Response regulator receiver domain HPY05_06540 PF01584 CheW-like domain HPY05_06560 PF00072 Response regulator receiver domain HPY05_06560 PF00990 Diguanylate cyclase, GGDEF domain HPY05_06585 PF07690 Major Facilitator Superfamily HPY05_06590 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HPY05_06590 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HPY05_06595 PF00288 GHMP kinases N terminal domain HPY05_06595 PF08544 GHMP kinases C terminal HPY05_06595 PF10509 Galactokinase galactose-binding signature HPY05_06600 PF01263 Aldose 1-epimerase HPY05_06610 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY05_06610 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY05_06610 PF00205 Thiamine pyrophosphate enzyme, central domain HPY05_06615 PF03306 Alpha-acetolactate decarboxylase HPY05_06620 PF03466 LysR substrate binding domain HPY05_06620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_06625 PF13402 Peptidase M60, enhancin and enhancin-like HPY05_06625 PF13322 Domain of unknown function (DUF4092) HPY05_06625 PF17291 N-terminal domain of M60-like peptidases HPY05_06635 PF06628 Catalase-related immune-responsive HPY05_06635 PF00199 Catalase HPY05_06645 PF00080 Copper/zinc superoxide dismutase (SODC) HPY05_06650 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) HPY05_06655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY05_06655 PF00361 Proton-conducting membrane transporter HPY05_06660 PF03466 LysR substrate binding domain HPY05_06660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_06665 PF13193 AMP-binding enzyme C-terminal domain HPY05_06665 PF00501 AMP-binding enzyme HPY05_06695 PF00206 Lyase HPY05_06695 PF10415 Fumarase C C-terminus HPY05_06705 PF01654 Cytochrome bd terminal oxidase subunit I HPY05_06710 PF02322 Cytochrome bd terminal oxidase subunit II HPY05_06715 PF12704 MacB-like periplasmic core domain HPY05_06715 PF00005 ABC transporter HPY05_06715 PF02687 FtsX-like permease family HPY05_06720 PF02687 FtsX-like permease family HPY05_06720 PF00005 ABC transporter HPY05_06720 PF12704 MacB-like periplasmic core domain HPY05_06725 PF12704 MacB-like periplasmic core domain HPY05_06725 PF02687 FtsX-like permease family HPY05_06725 PF00005 ABC transporter HPY05_06735 PF00529 HlyD membrane-fusion protein of T1SS HPY05_06745 PF00175 Oxidoreductase NAD-binding domain HPY05_06750 PF04443 Acyl-protein synthetase, LuxE HPY05_06755 PF00296 Luciferase-like monooxygenase HPY05_06760 PF00296 Luciferase-like monooxygenase HPY05_06765 PF02273 Acyl transferase HPY05_06770 PF05893 Acyl-CoA reductase (LuxC) HPY05_06775 PF00293 NUDIX domain HPY05_06775 PF09297 NADH pyrophosphatase zinc ribbon domain HPY05_06780 PF00709 Adenylosuccinate synthetase HPY05_06795 PF00977 Histidine biosynthesis protein HPY05_06800 PF00141 Peroxidase HPY05_06805 PF00232 Glycosyl hydrolase family 1 HPY05_06810 PF00356 Bacterial regulatory proteins, lacI family HPY05_06815 PF01042 Endoribonuclease L-PSP HPY05_06820 PF04074 YhcH/YjgK/YiaL HPY05_06825 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY05_06830 PF00455 DeoR C terminal sensor domain HPY05_06830 PF08220 DeoR-like helix-turn-helix domain HPY05_06835 PF00005 ABC transporter HPY05_06835 PF17912 MalK OB fold domain HPY05_06840 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_06845 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_06850 PF13416 Bacterial extracellular solute-binding protein HPY05_06860 PF01618 MotA/TolQ/ExbB proton channel family HPY05_06865 PF01618 MotA/TolQ/ExbB proton channel family HPY05_06870 PF02472 Biopolymer transport protein ExbD/TolR HPY05_06875 PF03544 Gram-negative bacterial TonB protein C-terminal HPY05_06885 PF14743 DNA ligase OB-like domain HPY05_06885 PF01068 ATP dependent DNA ligase domain HPY05_06895 PF01554 MatE HPY05_06905 PF03881 Fructosamine kinase HPY05_06915 PF00877 NlpC/P60 family HPY05_06920 PF12729 Four helix bundle sensory module for signal transduction HPY05_06920 PF00672 HAMP domain HPY05_06920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_06935 PF00480 ROK family HPY05_06950 PF03454 MoeA C-terminal region (domain IV) HPY05_06950 PF03453 MoeA N-terminal region (domain I and II) HPY05_06950 PF00994 Probable molybdopterin binding domain HPY05_06955 PF12804 MobA-like NTP transferase domain HPY05_06960 PF08402 TOBE domain HPY05_06960 PF00005 ABC transporter HPY05_06965 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_06970 PF12849 PBP superfamily domain HPY05_06975 PF00158 Sigma-54 interaction domain HPY05_06975 PF00072 Response regulator receiver domain HPY05_06975 PF02954 Bacterial regulatory protein, Fis family HPY05_06980 PF00512 His Kinase A (phospho-acceptor) domain HPY05_06980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_06980 PF00989 PAS fold HPY05_06985 PF12848 ABC transporter HPY05_06985 PF00005 ABC transporter HPY05_06990 PF02634 FdhD/NarQ family HPY05_07010 PF02613 Nitrate reductase delta subunit HPY05_07020 PF01568 Molydopterin dinucleotide binding domain HPY05_07020 PF00384 Molybdopterin oxidoreductase HPY05_07020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY05_07025 PF13247 4Fe-4S dicluster domain HPY05_07040 PF02146 Sir2 family HPY05_07045 PF04461 Protein of unknown function (DUF520) HPY05_07050 PF00793 DAHP synthetase I family HPY05_07065 PF17783 CvfB-like winged helix domain HPY05_07065 PF13509 S1 domain HPY05_07070 PF01189 16S rRNA methyltransferase RsmB/F HPY05_07070 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HPY05_07070 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HPY05_07075 PF02470 MlaD protein HPY05_07080 PF04403 Paraquat-inducible protein A HPY05_07085 PF00664 ABC transporter transmembrane region HPY05_07085 PF00005 ABC transporter HPY05_07090 PF13185 GAF domain HPY05_07095 PF04352 ProQ/FINO family HPY05_07095 PF17516 ProQ C-terminal domain HPY05_07100 PF17804 Tail specific protease N-terminal domain HPY05_07100 PF03572 Peptidase family S41 HPY05_07100 PF00595 PDZ domain HPY05_07100 PF11818 C-terminal domain of tail specific protease (DUF3340) HPY05_07110 PF01433 Peptidase family M1 domain HPY05_07110 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HPY05_07110 PF11940 Domain of unknown function (DUF3458) Ig-like fold HPY05_07120 PF05088 Bacterial NAD-glutamate dehydrogenase HPY05_07125 PF01180 Dihydroorotate dehydrogenase HPY05_07130 PF07126 Cell-division protein ZapC HPY05_07135 PF10672 S-adenosylmethionine-dependent methyltransferase HPY05_07135 PF01170 Putative RNA methylase family UPF0020 HPY05_07135 PF02926 THUMP domain HPY05_07155 PF04957 Ribosome modulation factor HPY05_07160 PF07977 FabA-like domain HPY05_07165 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY05_07165 PF13654 AAA domain HPY05_07170 PF06303 MatP N-terminal domain HPY05_07170 PF17414 MatP C-terminal ribbon-helix-helix domain HPY05_07270 PF11713 Peptidase C80 family HPY05_07270 PF11647 Membrane Localization Domain HPY05_07270 PF12146 Serine aminopeptidase, S33 HPY05_07270 PF16671 Actin cross-linking domain HPY05_07270 PF07634 RtxA repeat HPY05_07275 PF02794 RTX toxin acyltransferase family HPY05_07285 PF00664 ABC transporter transmembrane region HPY05_07285 PF00005 ABC transporter HPY05_07285 PF03412 Peptidase C39 family HPY05_07295 PF00664 ABC transporter transmembrane region HPY05_07295 PF03412 Peptidase C39 family HPY05_07295 PF00005 ABC transporter HPY05_07300 PF09308 LuxQ, periplasmic HPY05_07300 PF00512 His Kinase A (phospho-acceptor) domain HPY05_07300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_07300 PF00072 Response regulator receiver domain HPY05_07330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY05_07330 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HPY05_07340 PF00403 Heavy-metal-associated domain HPY05_07355 PF13545 Crp-like helix-turn-helix domain HPY05_07355 PF00027 Cyclic nucleotide-binding domain HPY05_07360 PF00582 Universal stress protein family HPY05_07365 PF01171 PP-loop family HPY05_07385 PF08402 TOBE domain HPY05_07385 PF00005 ABC transporter HPY05_07390 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_07395 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_07400 PF13416 Bacterial extracellular solute-binding protein HPY05_07405 PF13416 Bacterial extracellular solute-binding protein HPY05_07420 PF01235 Sodium:alanine symporter family HPY05_07425 PF01810 LysE type translocator HPY05_07455 PF16671 Actin cross-linking domain HPY05_07455 PF04717 Type VI secretion system, phage-baseplate injector HPY05_07460 PF05638 Type VI secretion system effector, Hcp HPY05_07465 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HPY05_07485 PF00271 Helicase conserved C-terminal domain HPY05_07485 PF00270 DEAD/DEAH box helicase HPY05_07490 PF00893 Small Multidrug Resistance protein HPY05_07495 PF03441 FAD binding domain of DNA photolyase HPY05_07495 PF00875 DNA photolyase HPY05_07500 PF07690 Major Facilitator Superfamily HPY05_07505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_07505 PF03466 LysR substrate binding domain HPY05_07515 PF01979 Amidohydrolase family HPY05_07520 PF10437 Bacterial lipoate protein ligase C-terminus HPY05_07520 PF03099 Biotin/lipoate A/B protein ligase family HPY05_07525 PF00012 Hsp70 protein HPY05_07535 PF00271 Helicase conserved C-terminal domain HPY05_07535 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HPY05_07535 PF00270 DEAD/DEAH box helicase HPY05_07535 PF04408 Helicase associated domain (HA2) HPY05_07535 PF11898 Domain of unknown function (DUF3418) HPY05_07555 PF03707 Bacterial signalling protein N terminal repeat HPY05_07555 PF00990 Diguanylate cyclase, GGDEF domain HPY05_07555 PF00563 EAL domain HPY05_07565 PF00012 Hsp70 protein HPY05_07570 PF00012 Hsp70 protein HPY05_07575 PF17158 Membrane-associated sensor, integral membrane domain HPY05_07575 PF00990 Diguanylate cyclase, GGDEF domain HPY05_07585 PF03707 Bacterial signalling protein N terminal repeat HPY05_07585 PF00563 EAL domain HPY05_07585 PF00990 Diguanylate cyclase, GGDEF domain HPY05_07605 PF06508 Queuosine biosynthesis protein QueC HPY05_07610 PF04055 Radical SAM superfamily HPY05_07620 PF14824 Sirohaem biosynthesis protein central HPY05_07620 PF10414 Sirohaem synthase dimerisation region HPY05_07620 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY05_07625 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY05_07630 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_07635 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_07640 PF00005 ABC transporter HPY05_07645 PF01027 Inhibitor of apoptosis-promoting Bax1 HPY05_07650 PF04358 DsrC like protein HPY05_07655 PF00708 Acylphosphatase HPY05_07660 PF10672 S-adenosylmethionine-dependent methyltransferase HPY05_07660 PF17785 PUA-like domain HPY05_07665 PF00990 Diguanylate cyclase, GGDEF domain HPY05_07670 PF00462 Glutaredoxin HPY05_07670 PF08534 Redoxin HPY05_07675 PF00512 His Kinase A (phospho-acceptor) domain HPY05_07675 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY05_07675 PF00072 Response regulator receiver domain HPY05_07675 PF01627 Hpt domain HPY05_07675 PF00672 HAMP domain HPY05_07675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_07680 PF00072 Response regulator receiver domain HPY05_07685 PF14497 Glutathione S-transferase, C-terminal domain HPY05_07685 PF02798 Glutathione S-transferase, N-terminal domain HPY05_07695 PF04209 homogentisate 1,2-dioxygenase HPY05_07700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY05_07705 PF01546 Peptidase family M20/M25/M40 HPY05_07705 PF07687 Peptidase dimerisation domain HPY05_07720 PF01609 Transposase DDE domain HPY05_07720 PF13006 Insertion element 4 transposase N-terminal HPY05_07725 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY05_07725 PF00501 AMP-binding enzyme HPY05_07725 PF13193 AMP-binding enzyme C-terminal domain HPY05_07730 PF04303 PrpF protein HPY05_07735 PF00694 Aconitase C-terminal domain HPY05_07735 PF00330 Aconitase family (aconitate hydratase) HPY05_07740 PF00285 Citrate synthase, C-terminal domain HPY05_07750 PF07729 FCD domain HPY05_07750 PF00392 Bacterial regulatory proteins, gntR family HPY05_07765 PF01970 Tripartite tricarboxylate transporter TctA family HPY05_07770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_07770 PF03466 LysR substrate binding domain HPY05_07775 PF07715 TonB-dependent Receptor Plug Domain HPY05_07775 PF00593 TonB dependent receptor HPY05_07800 PF00529 HlyD membrane-fusion protein of T1SS HPY05_07800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY05_07815 PF02653 Branched-chain amino acid transport system / permease component HPY05_07820 PF00005 ABC transporter HPY05_07825 PF13407 Periplasmic binding protein domain HPY05_07845 PF00486 Transcriptional regulatory protein, C terminal HPY05_07845 PF00072 Response regulator receiver domain HPY05_07850 PF00512 His Kinase A (phospho-acceptor) domain HPY05_07850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_07850 PF00672 HAMP domain HPY05_07855 PF06629 MltA-interacting protein MipA HPY05_07860 PF04393 Protein of unknown function (DUF535) HPY05_07865 PF00158 Sigma-54 interaction domain HPY05_07865 PF00072 Response regulator receiver domain HPY05_07865 PF02954 Bacterial regulatory protein, Fis family HPY05_07870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_07870 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY05_07870 PF00512 His Kinase A (phospho-acceptor) domain HPY05_07875 PF00939 Sodium:sulfate symporter transmembrane region HPY05_07880 PF00672 HAMP domain HPY05_07880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_07885 PF01168 Alanine racemase, N-terminal domain HPY05_07885 PF00842 Alanine racemase, C-terminal domain HPY05_07890 PF00892 EamA-like transporter family HPY05_07900 PF13302 Acetyltransferase (GNAT) domain HPY05_07905 PF18024 Helix-turn-helix domain HPY05_07905 PF00158 Sigma-54 interaction domain HPY05_07910 PF05128 Domain of unknown function (DUF697) HPY05_07915 PF04317 YcjX-like family, DUF463 HPY05_07930 PF00425 chorismate binding enzyme HPY05_07930 PF04715 Anthranilate synthase component I, N terminal region HPY05_07935 PF00293 NUDIX domain HPY05_07940 PF03222 Tryptophan/tyrosine permease family HPY05_07945 PF03313 Serine dehydratase alpha chain HPY05_07945 PF03315 Serine dehydratase beta chain HPY05_07950 PF01609 Transposase DDE domain HPY05_07950 PF13006 Insertion element 4 transposase N-terminal HPY05_07955 PF01242 6-pyruvoyl tetrahydropterin synthase HPY05_07965 PF12729 Four helix bundle sensory module for signal transduction HPY05_07965 PF00672 HAMP domain HPY05_07965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_07970 PF00152 tRNA synthetases class II (D, K and N) HPY05_07970 PF01336 OB-fold nucleic acid binding domain HPY05_07975 PF08543 Phosphomethylpyrimidine kinase HPY05_07980 PF00672 HAMP domain HPY05_07980 PF01966 HD domain HPY05_07985 PF00155 Aminotransferase class I and II HPY05_08000 PF17200 Single Cache domain 2 HPY05_08000 PF00672 HAMP domain HPY05_08000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_08005 PF04349 Periplasmic glucan biosynthesis protein, MdoG HPY05_08010 PF13506 Glycosyl transferase family 21 HPY05_08015 PF02028 BCCT, betaine/carnitine/choline family transporter HPY05_08020 PF01047 MarR family HPY05_08025 PF00196 Bacterial regulatory proteins, luxR family HPY05_08025 PF00072 Response regulator receiver domain HPY05_08030 PF17200 Single Cache domain 2 HPY05_08030 PF07730 Histidine kinase HPY05_08035 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY05_08045 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY05_08060 PF00753 Metallo-beta-lactamase superfamily HPY05_08065 PF05951 Bacterial protein of unknown function (DUF882) HPY05_08095 PF00925 GTP cyclohydrolase II HPY05_08105 PF07690 Major Facilitator Superfamily HPY05_08120 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY05_08120 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY05_08130 PF00317 Ribonucleotide reductase, all-alpha domain HPY05_08130 PF02867 Ribonucleotide reductase, barrel domain HPY05_08130 PF03477 ATP cone domain HPY05_08135 PF00268 Ribonucleotide reductase, small chain HPY05_08140 PF00175 Oxidoreductase NAD-binding domain HPY05_08140 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY05_08140 PF00970 Oxidoreductase FAD-binding domain HPY05_08150 PF00994 Probable molybdopterin binding domain HPY05_08165 PF17200 Single Cache domain 2 HPY05_08165 PF00672 HAMP domain HPY05_08165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_08180 PF00005 ABC transporter HPY05_08185 PF01032 FecCD transport family HPY05_08190 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HPY05_08200 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HPY05_08205 PF02654 Cobalamin-5-phosphate synthase HPY05_08210 PF02277 Phosphoribosyltransferase HPY05_08215 PF01641 SelR domain HPY05_08225 PF00929 Exonuclease HPY05_08225 PF08411 Exonuclease C-terminal HPY05_08230 PF03788 LrgA family HPY05_08235 PF04172 LrgB-like family HPY05_08240 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HPY05_08240 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY05_08250 PF02222 ATP-grasp domain HPY05_08255 PF01797 Transposase IS200 like HPY05_08260 PF05724 Thiopurine S-methyltransferase (TPMT) HPY05_08270 PF00216 Bacterial DNA-binding protein HPY05_08275 PF03147 Ferredoxin-fold anticodon binding domain HPY05_08275 PF03484 tRNA synthetase B5 domain HPY05_08275 PF03483 B3/4 domain HPY05_08275 PF01588 Putative tRNA binding domain HPY05_08275 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HPY05_08280 PF01409 tRNA synthetases class II core domain (F) HPY05_08280 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HPY05_08290 PF00990 Diguanylate cyclase, GGDEF domain HPY05_08290 PF00072 Response regulator receiver domain HPY05_08315 PF01066 CDP-alcohol phosphatidyltransferase HPY05_08320 PF01541 GIY-YIG catalytic domain HPY05_08320 PF08459 UvrC Helix-hairpin-helix N-terminal HPY05_08320 PF02151 UvrB/uvrC motif HPY05_08325 PF00072 Response regulator receiver domain HPY05_08325 PF00196 Bacterial regulatory proteins, luxR family HPY05_08330 PF03104 DNA polymerase family B, exonuclease domain HPY05_08330 PF00136 DNA polymerase family B HPY05_08335 PF00990 Diguanylate cyclase, GGDEF domain HPY05_08335 PF13426 PAS domain HPY05_08335 PF00563 EAL domain HPY05_08345 PF08207 Elongation factor P (EF-P) KOW-like domain HPY05_08345 PF01132 Elongation factor P (EF-P) OB domain HPY05_08345 PF09285 Elongation factor P, C-terminal HPY05_08350 PF04269 Protein of unknown function, DUF440 HPY05_08360 PF07702 UTRA domain HPY05_08360 PF00392 Bacterial regulatory proteins, gntR family HPY05_08365 PF01979 Amidohydrolase family HPY05_08370 PF00491 Arginase family HPY05_08375 PF17391 Urocanase N-terminal domain HPY05_08375 PF01175 Urocanase Rossmann-like domain HPY05_08375 PF17392 Urocanase C-terminal domain HPY05_08380 PF00221 Aromatic amino acid lyase HPY05_08395 PF04191 Phospholipid methyltransferase HPY05_08400 PF02913 FAD linked oxidases, C-terminal domain HPY05_08400 PF13183 4Fe-4S dicluster domain HPY05_08400 PF01565 FAD binding domain HPY05_08415 PF13488 Glycine zipper HPY05_08415 PF00691 OmpA family HPY05_08435 PF01259 SAICAR synthetase HPY05_08445 PF00390 Malic enzyme, N-terminal domain HPY05_08445 PF03949 Malic enzyme, NAD binding domain HPY05_08455 PF02698 DUF218 domain HPY05_08460 PF08448 PAS fold HPY05_08460 PF00990 Diguanylate cyclase, GGDEF domain HPY05_08465 PF00266 Aminotransferase class-V HPY05_08475 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY05_08480 PF00664 ABC transporter transmembrane region HPY05_08480 PF00005 ABC transporter HPY05_08485 PF00005 ABC transporter HPY05_08485 PF00664 ABC transporter transmembrane region HPY05_08490 PF01479 S4 domain HPY05_08490 PF00849 RNA pseudouridylate synthase HPY05_08495 PF01300 Telomere recombination HPY05_08500 PF02811 PHP domain HPY05_08505 PF08056 Tryptophan operon leader peptide HPY05_08510 PF04715 Anthranilate synthase component I, N terminal region HPY05_08510 PF00425 chorismate binding enzyme HPY05_08515 PF00117 Glutamine amidotransferase class-I HPY05_08520 PF00591 Glycosyl transferase family, a/b domain HPY05_08520 PF02885 Glycosyl transferase family, helical bundle domain HPY05_08525 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HPY05_08525 PF00218 Indole-3-glycerol phosphate synthase HPY05_08530 PF00291 Pyridoxal-phosphate dependent enzyme HPY05_08535 PF00290 Tryptophan synthase alpha chain HPY05_08540 PF00375 Sodium:dicarboxylate symporter family HPY05_08545 PF00265 Thymidine kinase HPY05_08550 PF00152 tRNA synthetases class II (D, K and N) HPY05_08550 PF01336 OB-fold nucleic acid binding domain HPY05_08550 PF02938 GAD domain HPY05_08555 PF01904 Protein of unknown function DUF72 HPY05_08560 PF13649 Methyltransferase domain HPY05_08565 PF08003 Protein of unknown function (DUF1698) HPY05_08570 PF08443 RimK-like ATP-grasp domain HPY05_08570 PF18030 RimK PreATP-grasp domain HPY05_08585 PF00266 Aminotransferase class-V HPY05_08595 PF00989 PAS fold HPY05_08595 PF00512 His Kinase A (phospho-acceptor) domain HPY05_08595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_08610 PF04993 TfoX N-terminal domain HPY05_08610 PF04994 TfoX C-terminal domain HPY05_08620 PF03956 Lysine exporter LysO HPY05_08630 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY05_08635 PF01380 SIS domain HPY05_08635 PF01418 Helix-turn-helix domain, rpiR family HPY05_08640 PF00465 Iron-containing alcohol dehydrogenase HPY05_08640 PF00171 Aldehyde dehydrogenase family HPY05_08645 PF00462 Glutaredoxin HPY05_08650 PF06826 Predicted Permease Membrane Region HPY05_08650 PF02080 TrkA-C domain HPY05_08655 PF10431 C-terminal, D2-small domain, of ClpB protein HPY05_08655 PF02861 Clp amino terminal domain, pathogenicity island component HPY05_08655 PF17871 AAA lid domain HPY05_08655 PF07724 AAA domain (Cdc48 subfamily) HPY05_08655 PF00004 ATPase family associated with various cellular activities (AAA) HPY05_08660 PF02617 ATP-dependent Clp protease adaptor protein ClpS HPY05_08665 PF00313 'Cold-shock' DNA-binding domain HPY05_08670 PF03971 Monomeric isocitrate dehydrogenase HPY05_08675 PF00849 RNA pseudouridylate synthase HPY05_08680 PF01502 Phosphoribosyl-AMP cyclohydrolase HPY05_08680 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HPY05_08685 PF00977 Histidine biosynthesis protein HPY05_08690 PF00977 Histidine biosynthesis protein HPY05_08695 PF00117 Glutamine amidotransferase class-I HPY05_08700 PF08645 Polynucleotide kinase 3 phosphatase HPY05_08700 PF00475 Imidazoleglycerol-phosphate dehydratase HPY05_08705 PF00155 Aminotransferase class I and II HPY05_08710 PF00815 Histidinol dehydrogenase HPY05_08715 PF08029 HisG, C-terminal domain HPY05_08715 PF01634 ATP phosphoribosyltransferase HPY05_08720 PF03553 Na+/H+ antiporter family HPY05_08725 PF00816 H-NS histone family HPY05_08730 PF00294 pfkB family carbohydrate kinase HPY05_08740 PF04356 Protein of unknown function (DUF489) HPY05_08745 PF08328 Adenylosuccinate lyase C-terminal HPY05_08745 PF00206 Lyase HPY05_08755 PF16036 Chalcone isomerase-like HPY05_08780 PF00106 short chain dehydrogenase HPY05_08790 PF01435 Peptidase family M48 HPY05_08805 PF08241 Methyltransferase domain HPY05_08810 PF00155 Aminotransferase class I and II HPY05_08815 PF06968 Biotin and Thiamin Synthesis associated domain HPY05_08815 PF04055 Radical SAM superfamily HPY05_08820 PF00202 Aminotransferase class-III HPY05_08825 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY05_08825 PF02403 Seryl-tRNA synthetase N-terminal domain HPY05_08830 PF00004 ATPase family associated with various cellular activities (AAA) HPY05_08830 PF16193 AAA C-terminal domain HPY05_08830 PF12002 MgsA AAA+ ATPase C terminal HPY05_08835 PF03548 Outer membrane lipoprotein carrier protein LolA HPY05_08840 PF07516 SecA Wing and Scaffold domain HPY05_08840 PF01043 SecA preprotein cross-linking domain HPY05_08840 PF07517 SecA DEAD-like domain HPY05_08840 PF02810 SEC-C motif HPY05_08845 PF01207 Dihydrouridine synthase (Dus) HPY05_08850 PF05230 MASE2 domain HPY05_08850 PF00990 Diguanylate cyclase, GGDEF domain HPY05_08855 PF00005 ABC transporter HPY05_08860 PF02653 Branched-chain amino acid transport system / permease component HPY05_08870 PF09905 DNA-binding protein VF530 HPY05_08875 PF04217 Protein of unknown function, DUF412 HPY05_08880 PF00871 Acetokinase family HPY05_08885 PF07085 DRTGG domain HPY05_08885 PF01515 Phosphate acetyl/butaryl transferase HPY05_08890 PF13409 Glutathione S-transferase, N-terminal domain HPY05_08895 PF00005 ABC transporter HPY05_08895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY05_08900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY05_08900 PF00005 ABC transporter HPY05_08905 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY05_08905 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_08910 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_08915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY05_08925 PF00512 His Kinase A (phospho-acceptor) domain HPY05_08925 PF08448 PAS fold HPY05_08925 PF13188 PAS domain HPY05_08925 PF00072 Response regulator receiver domain HPY05_08925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_08930 PF02954 Bacterial regulatory protein, Fis family HPY05_08930 PF00158 Sigma-54 interaction domain HPY05_08930 PF00072 Response regulator receiver domain HPY05_08935 PF03707 Bacterial signalling protein N terminal repeat HPY05_08935 PF00990 Diguanylate cyclase, GGDEF domain HPY05_08935 PF00563 EAL domain HPY05_08935 PF13188 PAS domain HPY05_08940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_08940 PF00512 His Kinase A (phospho-acceptor) domain HPY05_08945 PF13188 PAS domain HPY05_08945 PF13426 PAS domain HPY05_08945 PF00512 His Kinase A (phospho-acceptor) domain HPY05_08945 PF00989 PAS fold HPY05_08945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_08955 PF00072 Response regulator receiver domain HPY05_08970 PF01300 Telomere recombination HPY05_08970 PF03481 Putative GTP-binding controlling metal-binding HPY05_08985 PF01797 Transposase IS200 like HPY05_08995 PF01161 Phosphatidylethanolamine-binding protein HPY05_09005 PF00704 Glycosyl hydrolases family 18 HPY05_09005 PF06483 Chitinase C HPY05_09020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY05_09020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY05_09025 PF01022 Bacterial regulatory protein, arsR family HPY05_09035 PF00990 Diguanylate cyclase, GGDEF domain HPY05_09035 PF08448 PAS fold HPY05_09045 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY05_09060 PF13404 AsnC-type helix-turn-helix domain HPY05_09060 PF01037 Lrp/AsnC ligand binding domain HPY05_09065 PF00291 Pyridoxal-phosphate dependent enzyme HPY05_09070 PF01343 Peptidase family S49 HPY05_09070 PF08496 Peptidase family S49 N-terminal HPY05_09075 PF00106 short chain dehydrogenase HPY05_09085 PF03692 Putative zinc- or iron-chelating domain HPY05_09090 PF03692 Putative zinc- or iron-chelating domain HPY05_09100 PF02575 YbaB/EbfC DNA-binding family HPY05_09105 PF12170 DNA polymerase III tau subunit V interacting with alpha HPY05_09105 PF12169 DNA polymerase III subunits gamma and tau domain III HPY05_09105 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HPY05_09110 PF00156 Phosphoribosyl transferase domain HPY05_09115 PF04304 Protein of unknown function (DUF454) HPY05_09120 PF00072 Response regulator receiver domain HPY05_09125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_09125 PF03466 LysR substrate binding domain HPY05_09130 PF00881 Nitroreductase family HPY05_09135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY05_09135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY05_09135 PF00378 Enoyl-CoA hydratase/isomerase HPY05_09140 PF02803 Thiolase, C-terminal domain HPY05_09140 PF00108 Thiolase, N-terminal domain HPY05_09145 PF04542 Sigma-70 region 2 HPY05_09145 PF08281 Sigma-70, region 4 HPY05_09155 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY05_09160 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY05_09165 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY05_09170 PF12557 Cob(I)alamin adenosyltransferase N terminal HPY05_09170 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HPY05_09175 PF05170 AsmA family HPY05_09180 PF00485 Phosphoribulokinase / Uridine kinase family HPY05_09185 PF10609 NUBPL iron-transfer P-loop NTPase HPY05_09190 PF01588 Putative tRNA binding domain HPY05_09190 PF09334 tRNA synthetases class I (M) HPY05_09200 PF01048 Phosphorylase superfamily HPY05_09205 PF00403 Heavy-metal-associated domain HPY05_09210 PF00571 CBS domain HPY05_09210 PF01743 Poly A polymerase head domain HPY05_09215 PF07694 5TMR of 5TMR-LYT HPY05_09215 PF00990 Diguanylate cyclase, GGDEF domain HPY05_09220 PF02391 MoaE protein HPY05_09225 PF02597 ThiS family HPY05_09230 PF01967 MoaC family HPY05_09235 PF00994 Probable molybdopterin binding domain HPY05_09240 PF06463 Molybdenum Cofactor Synthesis C HPY05_09240 PF04055 Radical SAM superfamily HPY05_09245 PF01933 Uncharacterised protein family UPF0052 HPY05_09250 PF01627 Hpt domain HPY05_09255 PF00158 Sigma-54 interaction domain HPY05_09255 PF02954 Bacterial regulatory protein, Fis family HPY05_09255 PF00072 Response regulator receiver domain HPY05_09260 PF12344 Ultra-violet resistance protein B HPY05_09260 PF02151 UvrB/uvrC motif HPY05_09260 PF17757 UvrB interaction domain HPY05_09260 PF04851 Type III restriction enzyme, res subunit HPY05_09260 PF00271 Helicase conserved C-terminal domain HPY05_09270 PF02508 Rnf-Nqr subunit, membrane protein HPY05_09275 PF04060 Putative Fe-S cluster HPY05_09280 PF13375 RnfC Barrel sandwich hybrid domain HPY05_09280 PF10531 SLBB domain HPY05_09280 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HPY05_09280 PF12838 4Fe-4S dicluster domain HPY05_09285 PF03116 NQR2, RnfD, RnfE family HPY05_09290 PF04205 FMN-binding domain HPY05_09295 PF02508 Rnf-Nqr subunit, membrane protein HPY05_09300 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY05_09300 PF00633 Helix-hairpin-helix motif HPY05_09300 PF10576 Iron-sulfur binding domain of endonuclease III HPY05_09305 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY05_09310 PF10952 Protein of unknown function (DUF2753) HPY05_09315 PF00691 OmpA family HPY05_09315 PF18393 MotY N-terminal domain HPY05_09320 PF00929 Exonuclease HPY05_09325 PF03553 Na+/H+ antiporter family HPY05_09325 PF13726 Na+-H+ antiporter family HPY05_09330 PF00156 Phosphoribosyl transferase domain HPY05_09335 PF02674 Colicin V production protein HPY05_09340 PF05036 Sporulation related domain HPY05_09345 PF08245 Mur ligase middle domain HPY05_09345 PF02875 Mur ligase family, glutamate ligase domain HPY05_09350 PF01039 Carboxyl transferase domain HPY05_09350 PF17848 Acetyl-coA carboxylase zinc finger domain HPY05_09355 PF01416 tRNA pseudouridine synthase HPY05_09365 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HPY05_09365 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY05_09370 PF00367 phosphotransferase system, EIIB HPY05_09370 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY05_09370 PF02378 Phosphotransferase system, EIIC HPY05_09375 PF01979 Amidohydrolase family HPY05_09380 PF00480 ROK family HPY05_09380 PF01047 MarR family HPY05_09385 PF00999 Sodium/hydrogen exchanger family HPY05_09385 PF02254 TrkA-N domain HPY05_09390 PF13537 Glutamine amidotransferase domain HPY05_09390 PF00733 Asparagine synthase HPY05_09395 PF02357 Transcription termination factor nusG HPY05_09400 PF00854 POT family HPY05_09405 PF00762 Ferrochelatase HPY05_09410 PF05191 Adenylate kinase, active site lid HPY05_09415 PF00183 Hsp90 protein HPY05_09415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_09420 PF00486 Transcriptional regulatory protein, C terminal HPY05_09425 PF17323 Trans-membrane regulatory protein ToxS HPY05_09435 PF12850 Calcineurin-like phosphoesterase superfamily domain HPY05_09440 PF01370 NAD dependent epimerase/dehydratase family HPY05_09440 PF08338 Domain of unknown function (DUF1731) HPY05_09445 PF00106 short chain dehydrogenase HPY05_09450 PF00085 Thioredoxin HPY05_09455 PF01145 SPFH domain / Band 7 family HPY05_09455 PF16200 C-terminal region of band_7 HPY05_09460 PF01957 NfeD-like C-terminal, partner-binding HPY05_09465 PF13411 MerR HTH family regulatory protein HPY05_09475 PF13609 Gram-negative porin HPY05_09480 PF01653 NAD-dependent DNA ligase adenylation domain HPY05_09480 PF00533 BRCA1 C Terminus (BRCT) domain HPY05_09480 PF12826 Helix-hairpin-helix motif HPY05_09480 PF03120 NAD-dependent DNA ligase OB-fold domain HPY05_09480 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HPY05_09495 PF00291 Pyridoxal-phosphate dependent enzyme HPY05_09500 PF00381 PTS HPr component phosphorylation site HPY05_09505 PF05524 PEP-utilising enzyme, N-terminal HPY05_09505 PF00391 PEP-utilising enzyme, mobile domain HPY05_09505 PF02896 PEP-utilising enzyme, TIM barrel domain HPY05_09510 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY05_09515 PF01494 FAD binding domain HPY05_09520 PF04055 Radical SAM superfamily HPY05_09520 PF01938 TRAM domain HPY05_09520 PF00919 Uncharacterized protein family UPF0004 HPY05_09525 PF02562 PhoH-like protein HPY05_09530 PF02130 Uncharacterized protein family UPF0054 HPY05_09535 PF00571 CBS domain HPY05_09535 PF03471 Transporter associated domain HPY05_09540 PF00795 Carbon-nitrogen hydrolase HPY05_09545 PF07295 Zinc-ribbon containing domain HPY05_09550 PF00133 tRNA synthetases class I (I, L, M and V) HPY05_09550 PF13603 Leucyl-tRNA synthetase, Domain 2 HPY05_09550 PF08264 Anticodon-binding domain of tRNA HPY05_09555 PF04390 Lipopolysaccharide-assembly HPY05_09560 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HPY05_09560 PF06144 DNA polymerase III, delta subunit HPY05_09570 PF02590 Predicted SPOUT methyltransferase HPY05_09575 PF00905 Penicillin binding protein transpeptidase domain HPY05_09575 PF03717 Penicillin-binding Protein dimerisation domain HPY05_09580 PF01098 Cell cycle protein HPY05_09585 PF05036 Sporulation related domain HPY05_09585 PF03330 Lytic transglycolase HPY05_09590 PF00768 D-alanyl-D-alanine carboxypeptidase HPY05_09590 PF07943 Penicillin-binding protein 5, C-terminal domain HPY05_09595 PF04359 Protein of unknown function (DUF493) HPY05_09600 PF03099 Biotin/lipoate A/B protein ligase family HPY05_09605 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HPY05_09605 PF04055 Radical SAM superfamily HPY05_09615 PF00464 Serine hydroxymethyltransferase HPY05_09635 PF13807 G-rich domain on putative tyrosine kinase HPY05_09635 PF13614 AAA domain HPY05_09635 PF02706 Chain length determinant protein HPY05_09640 PF02563 Polysaccharide biosynthesis/export protein HPY05_09640 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HPY05_09640 PF10531 SLBB domain HPY05_09650 PF02397 Bacterial sugar transferase HPY05_09665 PF17945 Beta/Gamma crystallin HPY05_09665 PF12561 ToxR activated gene A lipoprotein domain HPY05_09680 PF03808 Glycosyl transferase WecB/TagA/CpsF family HPY05_09690 PF00534 Glycosyl transferases group 1 HPY05_09690 PF00862 Sucrose synthase HPY05_09700 PF00132 Bacterial transferase hexapeptide (six repeats) HPY05_09720 PF14602 Hexapeptide repeat of succinyl-transferase HPY05_09720 PF12464 Maltose acetyltransferase HPY05_09725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY05_09725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HPY05_09725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY05_09730 PF02350 UDP-N-acetylglucosamine 2-epimerase HPY05_09735 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY05_09740 PF00873 AcrB/AcrD/AcrF family HPY05_09745 PF13533 Biotin-lipoyl like HPY05_09775 PF02378 Phosphotransferase system, EIIC HPY05_09775 PF00367 phosphotransferase system, EIIB HPY05_09780 PF00356 Bacterial regulatory proteins, lacI family HPY05_09790 PF09383 NIL domain HPY05_09790 PF00005 ABC transporter HPY05_09795 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_09800 PF03180 NLPA lipoprotein HPY05_09805 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HPY05_09810 PF07348 Syd protein (SUKH-2) HPY05_09815 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HPY05_09815 PF14489 QueF-like protein HPY05_09825 PF00990 Diguanylate cyclase, GGDEF domain HPY05_09830 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HPY05_09830 PF11892 Domain of unknown function (DUF3412) HPY05_09830 PF03641 Possible lysine decarboxylase HPY05_09835 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY05_09835 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY05_09840 PF04241 Protein of unknown function (DUF423) HPY05_09845 PF03466 LysR substrate binding domain HPY05_09845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_09850 PF02568 Thiamine biosynthesis protein (ThiI) HPY05_09850 PF02926 THUMP domain HPY05_09855 PF13677 Membrane MotB of proton-channel complex MotA/MotB HPY05_09855 PF00691 OmpA family HPY05_09860 PF01618 MotA/TolQ/ExbB proton channel family HPY05_09865 PF02609 Exonuclease VII small subunit HPY05_09870 PF00348 Polyprenyl synthetase HPY05_09875 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HPY05_09875 PF02780 Transketolase, C-terminal domain HPY05_09875 PF02779 Transketolase, pyrimidine binding domain HPY05_09880 PF00849 RNA pseudouridylate synthase HPY05_09885 PF04287 tRNA pseudouridine synthase C HPY05_09900 PF13302 Acetyltransferase (GNAT) domain HPY05_09910 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HPY05_09915 PF03806 AbgT putative transporter family HPY05_09920 PF00444 Ribosomal protein L36 HPY05_09925 PF01197 Ribosomal protein L31 HPY05_09930 PF18389 TrmO C-terminal domain HPY05_09930 PF01980 tRNA-methyltransferase O HPY05_09935 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY05_09935 PF03129 Anticodon binding domain HPY05_09935 PF04073 Aminoacyl-tRNA editing domain HPY05_09945 PF06786 Uncharacterised protein family (UPF0253) HPY05_09955 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HPY05_09955 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HPY05_09955 PF02769 AIR synthase related protein, C-terminal domain HPY05_09965 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY05_09965 PF01464 Transglycosylase SLT domain HPY05_09970 PF14437 MafB19-like deaminase HPY05_09975 PF03806 AbgT putative transporter family HPY05_10000 PF00114 Pilin (bacterial filament) HPY05_10000 PF07963 Prokaryotic N-terminal methylation motif HPY05_10005 PF00684 DnaJ central domain HPY05_10005 PF00226 DnaJ domain HPY05_10005 PF01556 DnaJ C terminal domain HPY05_10010 PF00012 Hsp70 protein HPY05_10015 PF01025 GrpE HPY05_10020 PF01513 ATP-NAD kinase HPY05_10025 PF02463 RecF/RecN/SMC N terminal domain HPY05_10030 PF04355 SmpA / OmlA family HPY05_10035 PF03658 RnfH family Ubiquitin HPY05_10040 PF03364 Polyketide cyclase / dehydrase and lipid transport HPY05_10045 PF01668 SmpB protein HPY05_10075 PF00266 Aminotransferase class-V HPY05_10145 PF00037 4Fe-4S binding domain HPY05_10145 PF11953 Domain of unknown function (DUF3470) HPY05_10150 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY05_10150 PF00588 SpoU rRNA Methylase family HPY05_10160 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase HPY05_10165 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase HPY05_10170 PF04223 Citrate lyase, alpha subunit (CitF) HPY05_10175 PF03328 HpcH/HpaI aldolase/citrate lyase family HPY05_10180 PF06857 Malonate decarboxylase delta subunit (MdcD) HPY05_10185 PF08218 Citrate lyase ligase C-terminal domain HPY05_10190 PF03390 2-hydroxycarboxylate transporter family HPY05_10195 PF04277 Oxaloacetate decarboxylase, gamma chain HPY05_10200 PF00364 Biotin-requiring enzyme HPY05_10200 PF00682 HMGL-like HPY05_10200 PF02436 Conserved carboxylase domain HPY05_10205 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HPY05_10210 PF17203 Single cache domain 3 HPY05_10210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_10215 PF12431 Transcriptional regulator HPY05_10215 PF00072 Response regulator receiver domain HPY05_10235 PF01266 FAD dependent oxidoreductase HPY05_10240 PF01235 Sodium:alanine symporter family HPY05_10245 PF14863 Alkyl sulfatase dimerisation HPY05_10245 PF00753 Metallo-beta-lactamase superfamily HPY05_10245 PF14864 Alkyl sulfatase C-terminal HPY05_10250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_10250 PF03466 LysR substrate binding domain HPY05_10255 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HPY05_10255 PF01648 4'-phosphopantetheinyl transferase superfamily HPY05_10260 PF00005 ABC transporter HPY05_10265 PF01032 FecCD transport family HPY05_10270 PF01032 FecCD transport family HPY05_10275 PF01497 Periplasmic binding protein HPY05_10290 PF00425 chorismate binding enzyme HPY05_10295 PF00501 AMP-binding enzyme HPY05_10295 PF13193 AMP-binding enzyme C-terminal domain HPY05_10300 PF00550 Phosphopantetheine attachment site HPY05_10300 PF00857 Isochorismatase family HPY05_10305 PF01184 GPR1/FUN34/yaaH family HPY05_10310 PF06483 Chitinase C HPY05_10310 PF00704 Glycosyl hydrolases family 18 HPY05_10315 PF01510 N-acetylmuramoyl-L-alanine amidase HPY05_10320 PF05199 GMC oxidoreductase HPY05_10320 PF00732 GMC oxidoreductase HPY05_10325 PF00958 GMP synthase C terminal domain HPY05_10325 PF00117 Glutamine amidotransferase class-I HPY05_10325 PF02540 NAD synthase HPY05_10330 PF00571 CBS domain HPY05_10330 PF00478 IMP dehydrogenase / GMP reductase domain HPY05_10335 PF13742 OB-fold nucleic acid binding domain HPY05_10335 PF02601 Exonuclease VII, large subunit HPY05_10350 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HPY05_10350 PF01926 50S ribosome-binding GTPase HPY05_10355 PF13360 PQQ-like domain HPY05_10360 PF09976 Tetratricopeptide repeat-like domain HPY05_10365 PF13393 Histidyl-tRNA synthetase HPY05_10365 PF03129 Anticodon binding domain HPY05_10370 PF04551 GcpE protein HPY05_10375 PF13464 Domain of unknown function (DUF4115) HPY05_10380 PF04055 Radical SAM superfamily HPY05_10385 PF00334 Nucleoside diphosphate kinase HPY05_10390 PF12404 Peptidase HPY05_10390 PF00883 Cytosol aminopeptidase family, catalytic domain HPY05_10395 PF04384 Iron-sulphur cluster assembly HPY05_10400 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY05_10405 PF00012 Hsp70 protein HPY05_10410 PF00226 DnaJ domain HPY05_10410 PF07743 HSCB C-terminal oligomerisation domain HPY05_10415 PF01521 Iron-sulphur cluster biosynthesis HPY05_10420 PF01592 NifU-like N terminal domain HPY05_10425 PF00266 Aminotransferase class-V HPY05_10430 PF02082 Transcriptional regulator HPY05_10435 PF00588 SpoU rRNA Methylase family HPY05_10440 PF00459 Inositol monophosphatase family HPY05_10445 PF07549 SecD/SecF GG Motif HPY05_10445 PF02355 Protein export membrane protein HPY05_10450 PF13721 SecD export protein N-terminal TM region HPY05_10450 PF07549 SecD/SecF GG Motif HPY05_10450 PF02355 Protein export membrane protein HPY05_10455 PF02699 Preprotein translocase subunit HPY05_10460 PF01702 Queuine tRNA-ribosyltransferase HPY05_10465 PF02547 Queuosine biosynthesis protein HPY05_10470 PF00571 CBS domain HPY05_10475 PF00463 Isocitrate lyase family HPY05_10480 PF01274 Malate synthase HPY05_10485 PF03466 LysR substrate binding domain HPY05_10485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_10490 PF10417 C-terminal domain of 1-Cys peroxiredoxin HPY05_10490 PF00578 AhpC/TSA family HPY05_10495 PF03932 CutC family HPY05_10500 PF03976 Polyphosphate kinase 2 (PPK2) HPY05_10505 PF01895 PhoU domain HPY05_10510 PF00005 ABC transporter HPY05_10515 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_10520 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_10525 PF13089 Polyphosphate kinase N-terminal domain HPY05_10525 PF17941 Polyphosphate kinase C-terminal domain 1 HPY05_10525 PF02503 Polyphosphate kinase middle domain HPY05_10525 PF13090 Polyphosphate kinase C-terminal domain 2 HPY05_10530 PF02541 Ppx/GppA phosphatase family HPY05_10535 PF12849 PBP superfamily domain HPY05_10540 PF11808 Phosphate regulon sensor protein PhoR HPY05_10540 PF00989 PAS fold HPY05_10540 PF00512 His Kinase A (phospho-acceptor) domain HPY05_10540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_10545 PF00072 Response regulator receiver domain HPY05_10545 PF00486 Transcriptional regulatory protein, C terminal HPY05_10550 PF04381 Putative exonuclease, RdgC HPY05_10560 PF00037 4Fe-4S binding domain HPY05_10565 PF00881 Nitroreductase family HPY05_10605 PF00004 ATPase family associated with various cellular activities (AAA) HPY05_10605 PF07724 AAA domain (Cdc48 subfamily) HPY05_10605 PF10431 C-terminal, D2-small domain, of ClpB protein HPY05_10605 PF02861 Clp amino terminal domain, pathogenicity island component HPY05_10605 PF17871 AAA lid domain HPY05_10615 PF00849 RNA pseudouridylate synthase HPY05_10615 PF01479 S4 domain HPY05_10620 PF13525 Outer membrane lipoprotein HPY05_10625 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY05_10630 PF01817 Chorismate mutase type II HPY05_10630 PF00800 Prephenate dehydratase HPY05_10635 PF13416 Bacterial extracellular solute-binding protein HPY05_10640 PF00563 EAL domain HPY05_10640 PF00990 Diguanylate cyclase, GGDEF domain HPY05_10645 PF01931 Protein of unknown function DUF84 HPY05_10650 PF01371 Trp repressor protein HPY05_10655 PF01464 Transglycosylase SLT domain HPY05_10655 PF14718 Soluble lytic murein transglycosylase L domain HPY05_10660 PF12848 ABC transporter HPY05_10660 PF00005 ABC transporter HPY05_10665 PF07238 PilZ domain HPY05_10670 PF01817 Chorismate mutase type II HPY05_10670 PF02153 Prephenate dehydrogenase HPY05_10675 PF00793 DAHP synthetase I family HPY05_10680 PF06580 Histidine kinase HPY05_10680 PF07694 5TMR of 5TMR-LYT HPY05_10685 PF04397 LytTr DNA-binding domain HPY05_10685 PF00072 Response regulator receiver domain HPY05_10690 PF00933 Glycosyl hydrolase family 3 N terminal domain HPY05_10695 PF03702 Anhydro-N-acetylmuramic acid kinase HPY05_10700 PF13580 SIS domain HPY05_10715 PF02554 Carbon starvation protein CstA HPY05_10720 PF02401 LytB protein HPY05_10725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY05_10730 PF01252 Signal peptidase (SPase) II HPY05_10735 PF06827 Zinc finger found in FPG and IleRS HPY05_10735 PF00133 tRNA synthetases class I (I, L, M and V) HPY05_10735 PF08264 Anticodon-binding domain of tRNA HPY05_10740 PF06574 FAD synthetase HPY05_10740 PF01687 Riboflavin kinase HPY05_10745 PF03023 Lipid II flippase MurJ HPY05_10750 PF01649 Ribosomal protein S20 HPY05_10755 PF01022 Bacterial regulatory protein, arsR family HPY05_10760 PF03466 LysR substrate binding domain HPY05_10760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_10765 PF02690 Na+/Pi-cotransporter HPY05_10770 PF00303 Thymidylate synthase HPY05_10775 PF01790 Prolipoprotein diacylglyceryl transferase HPY05_10780 PF01925 Sulfite exporter TauE/SafE HPY05_10785 PF05524 PEP-utilising enzyme, N-terminal HPY05_10785 PF02896 PEP-utilising enzyme, TIM barrel domain HPY05_10785 PF01590 GAF domain HPY05_10785 PF00391 PEP-utilising enzyme, mobile domain HPY05_10790 PF00293 NUDIX domain HPY05_10795 PF02976 DNA mismatch repair enzyme MutH HPY05_10800 PF00248 Aldo/keto reductase family HPY05_10810 PF02954 Bacterial regulatory protein, Fis family HPY05_10810 PF00158 Sigma-54 interaction domain HPY05_10810 PF00072 Response regulator receiver domain HPY05_10815 PF01336 OB-fold nucleic acid binding domain HPY05_10815 PF00152 tRNA synthetases class II (D, K and N) HPY05_10825 PF05525 Branched-chain amino acid transport protein HPY05_10830 PF05175 Methyltransferase small domain HPY05_10835 PF00270 DEAD/DEAH box helicase HPY05_10835 PF00271 Helicase conserved C-terminal domain HPY05_10840 PF00009 Elongation factor Tu GTP binding domain HPY05_10840 PF16658 Class II release factor RF3, C-terminal domain HPY05_10840 PF03144 Elongation factor Tu domain 2 HPY05_10845 PF00990 Diguanylate cyclase, GGDEF domain HPY05_10845 PF00563 EAL domain HPY05_10845 PF03707 Bacterial signalling protein N terminal repeat HPY05_10860 PF13508 Acetyltransferase (GNAT) domain HPY05_10865 PF02036 SCP-2 sterol transfer family HPY05_10870 PF03707 Bacterial signalling protein N terminal repeat HPY05_10870 PF00990 Diguanylate cyclase, GGDEF domain HPY05_10870 PF00563 EAL domain HPY05_10875 PF01136 Peptidase family U32 HPY05_10880 PF01136 Peptidase family U32 HPY05_10895 PF07719 Tetratricopeptide repeat HPY05_10895 PF13181 Tetratricopeptide repeat HPY05_10900 PF03725 3' exoribonuclease family, domain 2 HPY05_10900 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HPY05_10900 PF01138 3' exoribonuclease family, domain 1 HPY05_10900 PF00575 S1 RNA binding domain HPY05_10900 PF00013 KH domain HPY05_10905 PF00312 Ribosomal protein S15 HPY05_10910 PF09157 Pseudouridine synthase II TruB, C-terminal HPY05_10910 PF01509 TruB family pseudouridylate synthase (N terminal domain) HPY05_10910 PF16198 tRNA pseudouridylate synthase B C-terminal domain HPY05_10915 PF02033 Ribosome-binding factor A HPY05_10920 PF11987 Translation-initiation factor 2 HPY05_10920 PF00009 Elongation factor Tu GTP binding domain HPY05_10920 PF08364 Bacterial translation initiation factor IF-2 associated region HPY05_10920 PF04760 Translation initiation factor IF-2, N-terminal region HPY05_10925 PF00575 S1 RNA binding domain HPY05_10925 PF08529 NusA N-terminal domain HPY05_10925 PF13184 NusA-like KH domain HPY05_10930 PF17384 RimP C-terminal SH3 domain HPY05_10930 PF02576 RimP N-terminal domain HPY05_10945 PF03840 Preprotein translocase SecG subunit HPY05_10950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY05_10950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY05_10950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY05_10950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY05_10955 PF00809 Pterin binding enzyme HPY05_10960 PF00004 ATPase family associated with various cellular activities (AAA) HPY05_10960 PF06480 FtsH Extracellular HPY05_10960 PF17862 AAA+ lid domain HPY05_10960 PF01434 Peptidase family M41 HPY05_10965 PF01728 FtsJ-like methyltransferase HPY05_10970 PF01985 CRS1 / YhbY (CRM) domain HPY05_10975 PF03449 Transcription elongation factor, N-terminal HPY05_10975 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY05_10980 PF13609 Gram-negative porin HPY05_10985 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HPY05_10990 PF01479 S4 domain HPY05_10990 PF00579 tRNA synthetases class I (W and Y) HPY05_10995 PF04225 Opacity-associated protein A LysM-like domain HPY05_10995 PF01551 Peptidase family M23 HPY05_11000 PF00873 AcrB/AcrD/AcrF family HPY05_11010 PF01521 Iron-sulphur cluster biosynthesis HPY05_11015 PF00202 Aminotransferase class-III HPY05_11020 PF01594 AI-2E family transporter HPY05_11025 PF05175 Methyltransferase small domain HPY05_11025 PF08468 Methyltransferase small domain N-terminal HPY05_11030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_11030 PF00072 Response regulator receiver domain HPY05_11030 PF09308 LuxQ, periplasmic HPY05_11030 PF00512 His Kinase A (phospho-acceptor) domain HPY05_11035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY05_11040 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_11045 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_11045 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY05_11050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY05_11050 PF00005 ABC transporter HPY05_11055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY05_11055 PF00005 ABC transporter HPY05_11065 PF01869 BadF/BadG/BcrA/BcrD ATPase family HPY05_11070 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY05_11070 PF02838 Glycosyl hydrolase family 20, domain 2 HPY05_11075 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain HPY05_11075 PF06165 Glycosyltransferase family 36 HPY05_11080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY05_11080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY05_11080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY05_11080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY05_11085 PF08402 TOBE domain HPY05_11085 PF00005 ABC transporter HPY05_11095 PF13416 Bacterial extracellular solute-binding protein HPY05_11100 PF00909 Ammonium Transporter Family HPY05_11105 PF00543 Nitrogen regulatory protein P-II HPY05_11110 PF06062 Uncharacterised protein family (UPF0231) HPY05_11115 PF06434 Aconitate hydratase 2 N-terminus HPY05_11115 PF11791 Aconitate B N-terminal domain HPY05_11115 PF00330 Aconitase family (aconitate hydratase) HPY05_11120 PF01734 Patatin-like phospholipase HPY05_11125 PF14814 Bifunctional transglycosylase second domain HPY05_11125 PF00905 Penicillin binding protein transpeptidase domain HPY05_11125 PF00912 Transglycosylase HPY05_11130 PF00271 Helicase conserved C-terminal domain HPY05_11130 PF00270 DEAD/DEAH box helicase HPY05_11130 PF08482 ATP-dependent helicase C-terminal HPY05_11130 PF04408 Helicase associated domain (HA2) HPY05_11140 PF17746 SfsA N-terminal OB domain HPY05_11140 PF03749 Sugar fermentation stimulation protein RE domain HPY05_11145 PF01258 Prokaryotic dksA/traR C4-type zinc finger HPY05_11150 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY05_11155 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY05_11155 PF01743 Poly A polymerase head domain HPY05_11155 PF12626 Polymerase A arginine-rich C-terminus HPY05_11160 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY05_11165 PF02548 Ketopantoate hydroxymethyltransferase HPY05_11170 PF02569 Pantoate-beta-alanine ligase HPY05_11175 PF01061 ABC-2 type transporter HPY05_11180 PF00005 ABC transporter HPY05_11185 PF01740 STAS domain HPY05_11185 PF00916 Sulfate permease family HPY05_11190 PF00484 Carbonic anhydrase HPY05_11195 PF00156 Phosphoribosyl transferase domain HPY05_11200 PF00440 Bacterial regulatory proteins, tetR family HPY05_11205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY05_11210 PF04348 LppC putative lipoprotein HPY05_11215 PF02021 Uncharacterised protein family UPF0102 HPY05_11220 PF13580 SIS domain HPY05_11225 PF04972 BON domain HPY05_11230 PF04386 Stringent starvation protein B HPY05_11235 PF02798 Glutathione S-transferase, N-terminal domain HPY05_11235 PF00043 Glutathione S-transferase, C-terminal domain HPY05_11240 PF02167 Cytochrome C1 family HPY05_11250 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HPY05_11250 PF00355 Rieske [2Fe-2S] domain HPY05_11255 PF00380 Ribosomal protein S9/S16 HPY05_11260 PF00572 Ribosomal protein L13 HPY05_11265 PF03969 AFG1-like ATPase HPY05_11275 PF00595 PDZ domain HPY05_11280 PF13180 PDZ domain HPY05_11285 PF01245 Ribosomal protein L19 HPY05_11290 PF01746 tRNA (Guanine-1)-methyltransferase HPY05_11295 PF05239 PRC-barrel domain HPY05_11295 PF01782 RimM N-terminal domain HPY05_11300 PF00886 Ribosomal protein S16 HPY05_11305 PF02978 Signal peptide binding domain HPY05_11305 PF02881 SRP54-type protein, helical bundle domain HPY05_11305 PF00448 SRP54-type protein, GTPase domain HPY05_11310 PF01578 Cytochrome C assembly protein HPY05_11315 PF00571 CBS domain HPY05_11315 PF01595 Cyclin M transmembrane N-terminal domain HPY05_11315 PF03471 Transporter associated domain HPY05_11320 PF02664 S-Ribosylhomocysteinase (LuxS) HPY05_11325 PF04262 Glutamate-cysteine ligase HPY05_11330 PF00675 Insulinase (Peptidase family M16) HPY05_11330 PF05193 Peptidase M16 inactive domain HPY05_11335 PF09335 SNARE associated Golgi protein HPY05_11345 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HPY05_11350 PF02436 Conserved carboxylase domain HPY05_11350 PF00364 Biotin-requiring enzyme HPY05_11350 PF00682 HMGL-like HPY05_11355 PF04277 Oxaloacetate decarboxylase, gamma chain HPY05_11400 PF02599 Global regulator protein family HPY05_11405 PF13840 ACT domain HPY05_11405 PF01842 ACT domain HPY05_11405 PF00696 Amino acid kinase family HPY05_11410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY05_11410 PF01411 tRNA synthetases class II (A) HPY05_11410 PF02272 DHHA1 domain HPY05_11415 PF02631 RecX family HPY05_11420 PF00154 recA bacterial DNA recombination protein HPY05_11425 PF02464 Competence-damaged protein HPY05_11430 PF12857 TOBE-like domain HPY05_11430 PF00005 ABC transporter HPY05_11435 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_11440 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_11450 PF00291 Pyridoxal-phosphate dependent enzyme HPY05_11455 PF01624 MutS domain I HPY05_11455 PF05188 MutS domain II HPY05_11455 PF05192 MutS domain III HPY05_11455 PF05190 MutS family domain IV HPY05_11455 PF00488 MutS domain V HPY05_11460 PF04542 Sigma-70 region 2 HPY05_11460 PF04539 Sigma-70 region 3 HPY05_11460 PF04545 Sigma-70, region 4 HPY05_11460 PF00140 Sigma-70 factor, region 1.2 HPY05_11465 PF01476 LysM domain HPY05_11465 PF01551 Peptidase family M23 HPY05_11475 PF01975 Survival protein SurE HPY05_11480 PF01142 tRNA pseudouridine synthase D (TruD) HPY05_11485 PF02542 YgbB family HPY05_11490 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HPY05_11495 PF04977 Septum formation initiator HPY05_11500 PF02673 Bacitracin resistance protein BacA HPY05_11505 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY05_11510 PF02152 Dihydroneopterin aldolase HPY05_11515 PF02660 Glycerol-3-phosphate acyltransferase HPY05_11520 PF00561 alpha/beta hydrolase fold HPY05_11525 PF00814 Glycoprotease family HPY05_11530 PF01165 Ribosomal protein S21 HPY05_11535 PF09424 Yqey-like protein HPY05_11540 PF10410 DnaB-helicase binding domain of primase HPY05_11540 PF08278 DNA primase DnaG DnaB-binding HPY05_11540 PF08275 DNA primase catalytic core, N-terminal domain HPY05_11540 PF01807 CHC2 zinc finger HPY05_11545 PF04542 Sigma-70 region 2 HPY05_11545 PF04546 Sigma-70, non-essential region HPY05_11545 PF00140 Sigma-70 factor, region 1.2 HPY05_11545 PF04539 Sigma-70 region 3 HPY05_11545 PF03979 Sigma-70 factor, region 1.1 HPY05_11545 PF04545 Sigma-70, region 4 HPY05_11560 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY05_11565 PF01380 SIS domain HPY05_11570 PF00455 DeoR C terminal sensor domain HPY05_11570 PF08220 DeoR-like helix-turn-helix domain HPY05_11575 PF02887 Pyruvate kinase, alpha/beta domain HPY05_11575 PF00224 Pyruvate kinase, barrel domain HPY05_11580 PF04402 Protein of unknown function (DUF541) HPY05_11585 PF03466 LysR substrate binding domain HPY05_11585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_11590 PF01810 LysE type translocator HPY05_11595 PF00924 Mechanosensitive ion channel HPY05_11595 PF05552 Conserved TM helix HPY05_11600 PF01116 Fructose-bisphosphate aldolase class-II HPY05_11610 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY05_11610 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY05_11615 PF00593 TonB dependent receptor HPY05_11615 PF07715 TonB-dependent Receptor Plug Domain HPY05_11620 PF03466 LysR substrate binding domain HPY05_11620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_11625 PF00456 Transketolase, thiamine diphosphate binding domain HPY05_11625 PF02779 Transketolase, pyrimidine binding domain HPY05_11625 PF02780 Transketolase, C-terminal domain HPY05_11630 PF02772 S-adenosylmethionine synthetase, central domain HPY05_11630 PF02773 S-adenosylmethionine synthetase, C-terminal domain HPY05_11630 PF00438 S-adenosylmethionine synthetase, N-terminal domain HPY05_11635 PF17283 SprT-like zinc ribbon domain HPY05_11635 PF10263 SprT-like family HPY05_11640 PF04231 Endonuclease I HPY05_11645 PF04452 RNA methyltransferase HPY05_11650 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HPY05_11650 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HPY05_11655 PF02622 Uncharacterized ACR, COG1678 HPY05_11660 PF03652 Holliday junction resolvase HPY05_11665 PF00579 tRNA synthetases class I (W and Y) HPY05_11665 PF01479 S4 domain HPY05_11675 PF00437 Type II/IV secretion system protein HPY05_11680 PF00437 Type II/IV secretion system protein HPY05_11685 PF01168 Alanine racemase, N-terminal domain HPY05_11690 PF03807 NADP oxidoreductase coenzyme F420-dependent HPY05_11690 PF14748 Pyrroline-5-carboxylate reductase dimerisation HPY05_11695 PF02325 YGGT family HPY05_11700 PF02594 Uncharacterised ACR, YggU family COG1872 HPY05_11710 PF01725 Ham1 family HPY05_11715 PF04055 Radical SAM superfamily HPY05_11715 PF06969 HemN C-terminal domain HPY05_11720 PF04960 Glutaminase HPY05_11725 PF02390 Putative methyltransferase HPY05_11730 PF10576 Iron-sulfur binding domain of endonuclease III HPY05_11730 PF00633 Helix-hairpin-helix motif HPY05_11730 PF14815 NUDIX domain HPY05_11730 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY05_11735 PF04362 Bacterial Fe(2+) trafficking HPY05_11740 PF01464 Transglycosylase SLT domain HPY05_11740 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HPY05_11765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_11765 PF00672 HAMP domain HPY05_11765 PF12729 Four helix bundle sensory module for signal transduction HPY05_11795 PF05099 Tellurite resistance protein TerB HPY05_11795 PF00226 DnaJ domain HPY05_11800 PF04453 LPS transport system D HPY05_11800 PF03968 OstA-like protein HPY05_11805 PF09312 SurA N-terminal domain HPY05_11810 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HPY05_11815 PF00398 Ribosomal RNA adenine dimethylase HPY05_11820 PF04379 ApaG domain HPY05_11825 PF00149 Calcineurin-like phosphoesterase HPY05_11830 PF00186 Dihydrofolate reductase HPY05_11835 PF12821 Threonine/Serine exporter, ThrE HPY05_11840 PF06738 Putative threonine/serine exporter HPY05_11845 PF01926 50S ribosome-binding GTPase HPY05_11845 PF01018 GTP1/OBG HPY05_11850 PF01016 Ribosomal L27 protein HPY05_11855 PF00829 Ribosomal prokaryotic L21 protein HPY05_11860 PF00348 Polyprenyl synthetase HPY05_11865 PF13520 Amino acid permease HPY05_11870 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HPY05_11870 PF00056 lactate/malate dehydrogenase, NAD binding domain HPY05_11875 PF02863 Arginine repressor, C-terminal domain HPY05_11875 PF01316 Arginine repressor, DNA binding domain HPY05_11880 PF16868 NMT1-like family HPY05_11890 PF00582 Universal stress protein family HPY05_11905 PF06877 Regulator of ribonuclease activity B HPY05_11915 PF01523 Putative modulator of DNA gyrase HPY05_11920 PF00795 Carbon-nitrogen hydrolase HPY05_11925 PF13116 Protein of unknown function HPY05_11925 PF13502 AsmA-like C-terminal region HPY05_11930 PF00575 S1 RNA binding domain HPY05_11930 PF10150 Ribonuclease E/G family HPY05_11935 PF02545 Maf-like protein HPY05_11940 PF04093 rod shape-determining protein MreD HPY05_11945 PF04085 rod shape-determining protein MreC HPY05_11980 PF00114 Pilin (bacterial filament) HPY05_11980 PF07963 Prokaryotic N-terminal methylation motif HPY05_11985 PF00114 Pilin (bacterial filament) HPY05_11985 PF07963 Prokaryotic N-terminal methylation motif HPY05_11995 PF00482 Type II secretion system (T2SS), protein F HPY05_12000 PF00437 Type II/IV secretion system protein HPY05_12010 PF01471 Putative peptidoglycan binding domain HPY05_12010 PF13401 AAA domain HPY05_12015 PF03958 Bacterial type II/III secretion system short domain HPY05_12015 PF00263 Bacterial type II and III secretion system protein HPY05_12035 PF00990 Diguanylate cyclase, GGDEF domain HPY05_12035 PF17157 Gammaproteobacterial periplasmic sensor domain HPY05_12035 PF00563 EAL domain HPY05_12040 PF00436 Single-strand binding protein family HPY05_12045 PF00196 Bacterial regulatory proteins, luxR family HPY05_12050 PF00483 Nucleotidyl transferase HPY05_12055 PF00005 ABC transporter HPY05_12055 PF17755 UvrA DNA-binding domain HPY05_12055 PF17760 UvrA interaction domain HPY05_12065 PF00266 Aminotransferase class-V HPY05_12070 PF01842 ACT domain HPY05_12070 PF00696 Amino acid kinase family HPY05_12075 PF02574 Homocysteine S-methyltransferase HPY05_12075 PF02965 Vitamin B12 dependent methionine synthase, activation domain HPY05_12075 PF02607 B12 binding domain HPY05_12075 PF02310 B12 binding domain HPY05_12075 PF00809 Pterin binding enzyme HPY05_12080 PF00999 Sodium/hydrogen exchanger family HPY05_12115 PF01507 Phosphoadenosine phosphosulfate reductase family HPY05_12120 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HPY05_12120 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HPY05_12125 PF00667 FAD binding domain HPY05_12125 PF00175 Oxidoreductase NAD-binding domain HPY05_12125 PF00258 Flavodoxin HPY05_12145 PF09583 Phage shock protein G (Phageshock_PspG) HPY05_12150 PF01207 Dihydrouridine synthase (Dus) HPY05_12155 PF01475 Ferric uptake regulator family HPY05_12165 PF12706 Beta-lactamase superfamily domain HPY05_12170 PF00342 Phosphoglucose isomerase HPY05_12175 PF01894 Uncharacterised protein family UPF0047 HPY05_12180 PF01168 Alanine racemase, N-terminal domain HPY05_12180 PF00842 Alanine racemase, C-terminal domain HPY05_12185 PF00772 DnaB-like helicase N terminal domain HPY05_12185 PF03796 DnaB-like helicase C terminal domain HPY05_12195 PF03948 Ribosomal protein L9, C-terminal domain HPY05_12195 PF01281 Ribosomal protein L9, N-terminal domain HPY05_12200 PF01084 Ribosomal protein S18 HPY05_12205 PF00436 Single-strand binding protein family HPY05_12210 PF01250 Ribosomal protein S6 HPY05_12215 PF00210 Ferritin-like domain HPY05_12220 PF04324 BFD-like [2Fe-2S] binding domain HPY05_12225 PF03144 Elongation factor Tu domain 2 HPY05_12225 PF00009 Elongation factor Tu GTP binding domain HPY05_12225 PF03143 Elongation factor Tu C-terminal domain HPY05_12230 PF00679 Elongation factor G C-terminus HPY05_12230 PF14492 Elongation Factor G, domain II HPY05_12230 PF03764 Elongation factor G, domain IV HPY05_12230 PF00009 Elongation factor Tu GTP binding domain HPY05_12230 PF03144 Elongation factor Tu domain 2 HPY05_12235 PF00177 Ribosomal protein S7p/S5e HPY05_12240 PF00164 Ribosomal protein S12/S23 HPY05_12250 PF02635 DsrE/DsrF-like family HPY05_12255 PF02635 DsrE/DsrF-like family HPY05_12260 PF13309 HTH domain HPY05_12260 PF08348 YheO-like PAS domain HPY05_12265 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY05_12265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY05_12275 PF04102 SlyX HPY05_12280 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HPY05_12285 PF01145 SPFH domain / Band 7 family HPY05_12290 PF12221 Bacterial membrane protein N terminal HPY05_12290 PF01145 SPFH domain / Band 7 family HPY05_12295 PF01926 50S ribosome-binding GTPase HPY05_12295 PF13167 GTP-binding GTPase N-terminal HPY05_12295 PF16360 GTP-binding GTPase Middle Region HPY05_12300 PF17209 Hfq protein HPY05_12310 PF08676 MutL C terminal dimerisation domain HPY05_12310 PF01119 DNA mismatch repair protein, C-terminal domain HPY05_12315 PF01520 N-acetylmuramoyl-L-alanine amidase HPY05_12320 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HPY05_12325 PF08331 Domain of unknown function (DUF1730) HPY05_12375 PF00929 Exonuclease HPY05_12380 PF03193 RsgA GTPase HPY05_12385 PF02666 Phosphatidylserine decarboxylase HPY05_12390 PF00939 Sodium:sulfate symporter transmembrane region HPY05_12400 PF01676 Metalloenzyme superfamily HPY05_12400 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HPY05_12405 PF01551 Peptidase family M23 HPY05_12415 PF08360 QacR-like protein, C-terminal region HPY05_12415 PF00440 Bacterial regulatory proteins, tetR family HPY05_12420 PF01208 Uroporphyrinogen decarboxylase (URO-D) HPY05_12425 PF09297 NADH pyrophosphatase zinc ribbon domain HPY05_12425 PF00293 NUDIX domain HPY05_12430 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HPY05_12435 PF04997 RNA polymerase Rpb1, domain 1 HPY05_12435 PF04998 RNA polymerase Rpb1, domain 5 HPY05_12435 PF05000 RNA polymerase Rpb1, domain 4 HPY05_12435 PF04983 RNA polymerase Rpb1, domain 3 HPY05_12435 PF00623 RNA polymerase Rpb1, domain 2 HPY05_12440 PF00562 RNA polymerase Rpb2, domain 6 HPY05_12440 PF04563 RNA polymerase beta subunit HPY05_12440 PF04560 RNA polymerase Rpb2, domain 7 HPY05_12440 PF04565 RNA polymerase Rpb2, domain 3 HPY05_12440 PF04561 RNA polymerase Rpb2, domain 2 HPY05_12440 PF10385 RNA polymerase beta subunit external 1 domain HPY05_12445 PF16320 Ribosomal protein L7/L12 dimerisation domain HPY05_12445 PF00542 Ribosomal protein L7/L12 C-terminal domain HPY05_12450 PF00466 Ribosomal protein L10 HPY05_12455 PF00687 Ribosomal protein L1p/L10e family HPY05_12460 PF03946 Ribosomal protein L11, N-terminal domain HPY05_12460 PF00298 Ribosomal protein L11, RNA binding domain HPY05_12465 PF00467 KOW motif HPY05_12465 PF02357 Transcription termination factor nusG HPY05_12470 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HPY05_12475 PF00009 Elongation factor Tu GTP binding domain HPY05_12475 PF03144 Elongation factor Tu domain 2 HPY05_12475 PF03143 Elongation factor Tu C-terminal domain HPY05_12500 PF00485 Phosphoribulokinase / Uridine kinase family HPY05_12505 PF03099 Biotin/lipoate A/B protein ligase family HPY05_12505 PF08279 HTH domain HPY05_12505 PF02237 Biotin protein ligase C terminal domain HPY05_12510 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HPY05_12510 PF01565 FAD binding domain HPY05_12520 PF13091 PLD-like domain HPY05_12590 PF00175 Oxidoreductase NAD-binding domain HPY05_12595 PF00970 Oxidoreductase FAD-binding domain HPY05_12595 PF00175 Oxidoreductase NAD-binding domain HPY05_12595 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY05_12600 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HPY05_12610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY05_12610 PF07498 Rho termination factor, N-terminal domain HPY05_12610 PF07497 Rho termination factor, RNA-binding domain HPY05_12615 PF00085 Thioredoxin HPY05_12620 PF00271 Helicase conserved C-terminal domain HPY05_12620 PF00270 DEAD/DEAH box helicase HPY05_12625 PF02541 Ppx/GppA phosphatase family HPY05_12630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_12630 PF00512 His Kinase A (phospho-acceptor) domain HPY05_12630 PF09456 RcsC Alpha-Beta-Loop (ABL) HPY05_12630 PF00072 Response regulator receiver domain HPY05_12635 PF12832 MFS_1 like family HPY05_12650 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY05_12650 PF00501 AMP-binding enzyme HPY05_12650 PF13193 AMP-binding enzyme C-terminal domain HPY05_12655 PF01220 Dehydroquinase class II HPY05_12660 PF00364 Biotin-requiring enzyme HPY05_12665 PF02785 Biotin carboxylase C-terminal domain HPY05_12665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HPY05_12665 PF00289 Biotin carboxylase, N-terminal domain HPY05_12675 PF01207 Dihydrouridine synthase (Dus) HPY05_12680 PF02954 Bacterial regulatory protein, Fis family HPY05_12685 PF00356 Bacterial regulatory proteins, lacI family HPY05_12685 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY05_12690 PF11647 Membrane Localization Domain HPY05_12695 PF01699 Sodium/calcium exchanger protein HPY05_12700 PF00920 Dehydratase family HPY05_12705 PF01202 Shikimate kinase HPY05_12710 PF02447 GntP family permease HPY05_12715 PF01081 KDPG and KHG aldolase HPY05_12720 PF07715 TonB-dependent Receptor Plug Domain HPY05_12720 PF00593 TonB dependent receptor HPY05_12735 PF17200 Single Cache domain 2 HPY05_12735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_12735 PF00672 HAMP domain HPY05_12740 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HPY05_12740 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HPY05_12740 PF01276 Orn/Lys/Arg decarboxylase, major domain HPY05_12745 PF13520 Amino acid permease HPY05_12750 PF00486 Transcriptional regulatory protein, C terminal HPY05_12750 PF18500 CadC C-terminal domain 1 HPY05_12755 PF13411 MerR HTH family regulatory protein HPY05_12765 PF01808 AICARFT/IMPCHase bienzyme HPY05_12765 PF02142 MGS-like domain HPY05_12770 PF02843 Phosphoribosylglycinamide synthetase, C domain HPY05_12770 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HPY05_12770 PF02844 Phosphoribosylglycinamide synthetase, N domain HPY05_12780 PF00216 Bacterial DNA-binding protein HPY05_12785 PF01595 Cyclin M transmembrane N-terminal domain HPY05_12785 PF00571 CBS domain HPY05_12790 PF04222 Protein of unknown function (DUF416) HPY05_12795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY05_12800 PF03167 Uracil DNA glycosylase superfamily HPY05_12805 PF00924 Mechanosensitive ion channel HPY05_12810 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HPY05_12810 PF10996 Beta-Casp domain HPY05_12810 PF00753 Metallo-beta-lactamase superfamily HPY05_12815 PF02348 Cytidylyltransferase HPY05_12825 PF00793 DAHP synthetase I family HPY05_12830 PF05159 Capsule polysaccharide biosynthesis protein HPY05_12845 PF02563 Polysaccharide biosynthesis/export protein HPY05_12845 PF10531 SLBB domain HPY05_12855 PF00005 ABC transporter HPY05_12860 PF01061 ABC-2 type transporter HPY05_12865 PF00571 CBS domain HPY05_12865 PF01380 SIS domain HPY05_12875 PF02397 Bacterial sugar transferase HPY05_12885 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF HPY05_12895 PF06082 Exopolysaccharide biosynthesis protein YbjH HPY05_12905 PF02719 Polysaccharide biosynthesis protein HPY05_12910 PF02397 Bacterial sugar transferase HPY05_12915 PF01370 NAD dependent epimerase/dehydratase family HPY05_12930 PF00535 Glycosyl transferase family 2 HPY05_12955 PF02350 UDP-N-acetylglucosamine 2-epimerase HPY05_12965 PF02719 Polysaccharide biosynthesis protein HPY05_12965 PF08485 Polysaccharide biosynthesis protein C-terminal HPY05_12970 PF00534 Glycosyl transferases group 1 HPY05_13000 PF01370 NAD dependent epimerase/dehydratase family HPY05_13005 PF01522 Polysaccharide deacetylase HPY05_13005 PF00457 Glycosyl hydrolases family 11 HPY05_13025 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY05_13030 PF04488 Glycosyltransferase sugar-binding region containing DXD motif HPY05_13035 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HPY05_13065 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY05_13070 PF00535 Glycosyl transferase family 2 HPY05_13075 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY05_13080 PF01467 Cytidylyltransferase-like HPY05_13085 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HPY05_13085 PF06827 Zinc finger found in FPG and IleRS HPY05_13085 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HPY05_13095 PF00471 Ribosomal protein L33 HPY05_13100 PF00830 Ribosomal L28 family HPY05_13105 PF04002 RadC-like JAB domain HPY05_13110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_13110 PF00672 HAMP domain HPY05_13110 PF02743 Cache domain HPY05_13115 PF04127 DNA / pantothenate metabolism flavoprotein HPY05_13115 PF02441 Flavoprotein HPY05_13125 PF00440 Bacterial regulatory proteins, tetR family HPY05_13130 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY05_13135 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY05_13140 PF00156 Phosphoribosyl transferase domain HPY05_13145 PF03725 3' exoribonuclease family, domain 2 HPY05_13145 PF01138 3' exoribonuclease family, domain 1 HPY05_13150 PF03755 YicC-like family, N-terminal region HPY05_13150 PF08340 Domain of unknown function (DUF1732) HPY05_13155 PF03350 Uncharacterized protein family, UPF0114 HPY05_13160 PF00267 Gram-negative porin HPY05_13165 PF00367 phosphotransferase system, EIIB HPY05_13165 PF02378 Phosphotransferase system, EIIC HPY05_13170 PF13580 SIS domain HPY05_13175 PF01380 SIS domain HPY05_13175 PF01418 Helix-turn-helix domain, rpiR family HPY05_13185 PF00570 HRDC domain HPY05_13185 PF00270 DEAD/DEAH box helicase HPY05_13185 PF00271 Helicase conserved C-terminal domain HPY05_13185 PF09382 RQC domain HPY05_13185 PF16124 RecQ zinc-binding HPY05_13190 PF00892 EamA-like transporter family HPY05_13200 PF12833 Helix-turn-helix domain HPY05_13205 PF01810 LysE type translocator HPY05_13210 PF00580 UvrD/REP helicase N-terminal domain HPY05_13210 PF13361 UvrD-like helicase C-terminal domain HPY05_13215 PF01432 Peptidase family M3 HPY05_13220 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HPY05_13225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY05_13225 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY05_13235 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_13235 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY05_13245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY05_13250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY05_13250 PF00005 ABC transporter HPY05_13285 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY05_13290 PF00580 UvrD/REP helicase N-terminal domain HPY05_13290 PF13361 UvrD-like helicase C-terminal domain HPY05_13295 PF00440 Bacterial regulatory proteins, tetR family HPY05_13300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY05_13305 PF00873 AcrB/AcrD/AcrF family HPY05_13310 PF04380 Membrane fusogenic activity HPY05_13315 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HPY05_13315 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HPY05_13320 PF03466 LysR substrate binding domain HPY05_13320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_13390 PF12724 Flavodoxin domain HPY05_13395 PF02386 Cation transport protein HPY05_13400 PF09186 Domain of unknown function (DUF1949) HPY05_13400 PF01205 Uncharacterized protein family UPF0029 HPY05_13405 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY05_13405 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY05_13405 PF00378 Enoyl-CoA hydratase/isomerase HPY05_13410 PF02803 Thiolase, C-terminal domain HPY05_13410 PF00108 Thiolase, N-terminal domain HPY05_13415 PF03466 LysR substrate binding domain HPY05_13415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_13420 PF07690 Major Facilitator Superfamily HPY05_13425 PF00132 Bacterial transferase hexapeptide (six repeats) HPY05_13425 PF12804 MobA-like NTP transferase domain HPY05_13430 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HPY05_13430 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HPY05_13435 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY05_13435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY05_13440 PF00231 ATP synthase HPY05_13445 PF00306 ATP synthase alpha/beta chain, C terminal domain HPY05_13445 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY05_13445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY05_13450 PF00213 ATP synthase delta (OSCP) subunit HPY05_13455 PF00430 ATP synthase B/B' CF(0) HPY05_13460 PF00137 ATP synthase subunit C HPY05_13465 PF00119 ATP synthase A chain HPY05_13470 PF03899 ATP synthase I chain HPY05_13475 PF17762 HTH domain found in ParB protein HPY05_13475 PF02195 ParB-like nuclease domain HPY05_13480 PF13614 AAA domain HPY05_13485 PF02527 rRNA small subunit methyltransferase G HPY05_13490 PF13932 GidA associated domain HPY05_13490 PF01134 Glucose inhibited division protein A HPY05_13495 PF00258 Flavodoxin HPY05_13500 PF10396 GTP-binding protein TrmE N-terminus HPY05_13500 PF12631 MnmE helical domain HPY05_13500 PF01926 50S ribosome-binding GTPase HPY05_13505 PF02096 60Kd inner membrane protein HPY05_13505 PF14849 YidC periplasmic domain HPY05_13510 PF01809 Putative membrane protein insertion efficiency factor HPY05_13515 PF00825 Ribonuclease P HPY05_13520 PF00468 Ribosomal protein L34 HPY05_13525 PF00005 ABC transporter HPY05_13530 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_13535 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY05_13540 PF02195 ParB-like nuclease domain HPY05_13540 PF08775 ParB family HPY05_13545 PF13614 AAA domain HPY05_13545 PF18607 ParA helix turn helix domain HPY05_13570 PF01709 Transcriptional regulator HPY05_13575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY05_13575 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HPY05_13580 PF17200 Single Cache domain 2 HPY05_13580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_13580 PF00672 HAMP domain HPY05_13585 PF10928 Protein of unknown function (DUF2810) HPY05_13590 PF17874 MalT-like TPR region HPY05_13590 PF00196 Bacterial regulatory proteins, luxR family HPY05_13595 PF00343 Carbohydrate phosphorylase HPY05_13600 PF02446 4-alpha-glucanotransferase HPY05_13605 PF02806 Alpha amylase, C-terminal all-beta domain HPY05_13605 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY05_13605 PF00128 Alpha amylase, catalytic domain HPY05_13610 PF05638 Type VI secretion system effector, Hcp HPY05_13615 PF04717 Type VI secretion system, phage-baseplate injector HPY05_13615 PF16671 Actin cross-linking domain HPY05_13640 PF01757 Acyltransferase family HPY05_13640 PF00842 Alanine racemase, C-terminal domain HPY05_13640 PF01168 Alanine racemase, N-terminal domain HPY05_13650 PF00939 Sodium:sulfate symporter transmembrane region HPY05_13655 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY05_13660 PF08329 Chitinase A, N-terminal domain HPY05_13660 PF00704 Glycosyl hydrolases family 18 HPY05_13685 PF01569 PAP2 superfamily HPY05_13690 PF04389 Peptidase family M28 HPY05_13690 PF02225 PA domain HPY05_13695 PF00375 Sodium:dicarboxylate symporter family HPY05_13705 PF02630 SCO1/SenC HPY05_13720 PF03616 Sodium/glutamate symporter HPY05_13725 PF12945 Flagellar protein YcgR HPY05_13725 PF07238 PilZ domain HPY05_13740 PF00529 HlyD membrane-fusion protein of T1SS HPY05_13740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY05_13745 PF11742 Protein of unknown function (DUF3302) HPY05_13750 PF00990 Diguanylate cyclase, GGDEF domain HPY05_13765 PF01048 Phosphorylase superfamily HPY05_13770 PF08349 Protein of unknown function (DUF1722) HPY05_13775 PF13411 MerR HTH family regulatory protein HPY05_13780 PF03441 FAD binding domain of DNA photolyase HPY05_13780 PF00875 DNA photolyase HPY05_13785 PF17969 L,D-transpeptidase C-terminal domain HPY05_13785 PF03734 L,D-transpeptidase catalytic domain HPY05_13785 PF01476 LysM domain HPY05_13795 PF00271 Helicase conserved C-terminal domain HPY05_13795 PF00270 DEAD/DEAH box helicase HPY05_13800 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HPY05_13800 PF00326 Prolyl oligopeptidase family HPY05_13805 PF00593 TonB dependent receptor HPY05_13805 PF07715 TonB-dependent Receptor Plug Domain HPY05_13825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_13825 PF00672 HAMP domain HPY05_13825 PF12729 Four helix bundle sensory module for signal transduction HPY05_13830 PF12849 PBP superfamily domain HPY05_13835 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_13840 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_13845 PF00005 ABC transporter HPY05_13850 PF00990 Diguanylate cyclase, GGDEF domain HPY05_13850 PF00072 Response regulator receiver domain HPY05_13865 PF01740 STAS domain HPY05_13865 PF00916 Sulfate permease family HPY05_13875 PF01476 LysM domain HPY05_13875 PF08525 Opacity-associated protein A N-terminal motif HPY05_13875 PF01551 Peptidase family M23 HPY05_13880 PF13188 PAS domain HPY05_13880 PF03707 Bacterial signalling protein N terminal repeat HPY05_13880 PF00990 Diguanylate cyclase, GGDEF domain HPY05_13880 PF00563 EAL domain HPY05_13885 PF03466 LysR substrate binding domain HPY05_13885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_13890 PF07690 Major Facilitator Superfamily HPY05_13895 PF09278 MerR, DNA binding HPY05_13895 PF00376 MerR family regulatory protein HPY05_13910 PF00375 Sodium:dicarboxylate symporter family HPY05_13925 PF02001 Protein of unknown function DUF134 HPY05_13950 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY05_13950 PF01483 Proprotein convertase P-domain HPY05_13950 PF01447 Thermolysin metallopeptidase, catalytic domain HPY05_13950 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY05_13960 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HPY05_13960 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HPY05_13965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY05_13965 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HPY05_13970 PF00581 Rhodanese-like domain HPY05_13975 PF00563 EAL domain HPY05_13975 PF00196 Bacterial regulatory proteins, luxR family HPY05_13980 PF13419 Haloacid dehalogenase-like hydrolase HPY05_13985 PF01740 STAS domain HPY05_13985 PF00916 Sulfate permease family HPY05_13990 PF00849 RNA pseudouridylate synthase HPY05_14050 PF17871 AAA lid domain HPY05_14050 PF07724 AAA domain (Cdc48 subfamily) HPY05_14050 PF00004 ATPase family associated with various cellular activities (AAA) HPY05_14050 PF10431 C-terminal, D2-small domain, of ClpB protein HPY05_14095 PF05025 RbsD / FucU transport protein family HPY05_14100 PF00005 ABC transporter HPY05_14105 PF02653 Branched-chain amino acid transport system / permease component HPY05_14110 PF13407 Periplasmic binding protein domain HPY05_14115 PF00294 pfkB family carbohydrate kinase HPY05_14120 PF00356 Bacterial regulatory proteins, lacI family HPY05_14125 PF04973 Nicotinamide mononucleotide transporter HPY05_14130 PF01048 Phosphorylase superfamily HPY05_14150 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY05_14155 PF07690 Major Facilitator Superfamily HPY05_14170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_14170 PF00512 His Kinase A (phospho-acceptor) domain HPY05_14170 PF02743 Cache domain HPY05_14175 PF02954 Bacterial regulatory protein, Fis family HPY05_14175 PF00072 Response regulator receiver domain HPY05_14175 PF00158 Sigma-54 interaction domain HPY05_14190 PF01266 FAD dependent oxidoreductase HPY05_14195 PF00041 Fibronectin type III domain HPY05_14195 PF12561 ToxR activated gene A lipoprotein domain HPY05_14200 PF01327 Polypeptide deformylase HPY05_14205 PF00970 Oxidoreductase FAD-binding domain HPY05_14205 PF00175 Oxidoreductase NAD-binding domain HPY05_14205 PF00042 Globin HPY05_14210 PF03334 Na+/H+ antiporter subunit HPY05_14215 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) HPY05_14235 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter HPY05_14235 PF13244 Domain of unknown function (DUF4040) HPY05_14235 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY05_14235 PF00361 Proton-conducting membrane transporter HPY05_14245 PF00582 Universal stress protein family HPY05_14250 PF03222 Tryptophan/tyrosine permease family HPY05_14255 PF01212 Beta-eliminating lyase HPY05_14265 PF12843 Putative quorum-sensing-regulated virulence factor HPY05_14275 PF00990 Diguanylate cyclase, GGDEF domain HPY05_14275 PF08448 PAS fold HPY05_14275 PF00563 EAL domain HPY05_14280 PF00313 'Cold-shock' DNA-binding domain HPY05_14295 PF13519 von Willebrand factor type A domain HPY05_14295 PF07584 Aerotolerance regulator N-terminal HPY05_14310 PF01882 Protein of unknown function DUF58 HPY05_14315 PF07726 ATPase family associated with various cellular activities (AAA) HPY05_14315 PF17863 AAA lid domain HPY05_14320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_14320 PF00672 HAMP domain HPY05_14320 PF02743 Cache domain HPY05_14335 PF07670 Nucleoside recognition HPY05_14335 PF07662 Na+ dependent nucleoside transporter C-terminus HPY05_14335 PF01773 Na+ dependent nucleoside transporter N-terminus HPY05_14340 PF07687 Peptidase dimerisation domain HPY05_14340 PF01546 Peptidase family M20/M25/M40 HPY05_14350 PF00158 Sigma-54 interaction domain HPY05_14350 PF01590 GAF domain HPY05_14355 PF00970 Oxidoreductase FAD-binding domain HPY05_14355 PF00042 Globin HPY05_14355 PF00175 Oxidoreductase NAD-binding domain HPY05_14360 PF00313 'Cold-shock' DNA-binding domain HPY05_14365 PF03889 Alternative ribosome-rescue factor A HPY05_14380 PF00072 Response regulator receiver domain HPY05_14390 PF03853 YjeF-related protein N-terminus HPY05_14390 PF01256 Carbohydrate kinase HPY05_14395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY05_14395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY05_14405 PF07885 Ion channel HPY05_14415 PF00478 IMP dehydrogenase / GMP reductase domain HPY05_14430 PF01797 Transposase IS200 like HPY05_14440 PF00271 Helicase conserved C-terminal domain HPY05_14440 PF00270 DEAD/DEAH box helicase HPY05_14445 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY05_14450 PF02540 NAD synthase HPY05_14455 PF01467 Cytidylyltransferase-like HPY05_14460 PF11849 Domain of unknown function (DUF3369) HPY05_14480 PF03553 Na+/H+ antiporter family HPY05_14485 PF07690 Major Facilitator Superfamily HPY05_14495 PF05230 MASE2 domain HPY05_14495 PF00990 Diguanylate cyclase, GGDEF domain HPY05_14500 PF00657 GDSL-like Lipase/Acylhydrolase HPY05_14505 PF16458 Beta-prism lectin HPY05_14505 PF12563 Hemolytic toxin N terminal HPY05_14505 PF07968 Leukocidin/Hemolysin toxin family HPY05_14510 PF00672 HAMP domain HPY05_14510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_14510 PF12729 Four helix bundle sensory module for signal transduction HPY05_14515 PF00561 alpha/beta hydrolase fold HPY05_14520 PF03280 Proteobacterial lipase chaperone protein HPY05_14525 PF00801 PKD domain HPY05_14525 PF05547 Immune inhibitor A peptidase M6 HPY05_14545 PF01032 FecCD transport family HPY05_14550 PF01032 FecCD transport family HPY05_14555 PF00005 ABC transporter HPY05_14560 PF12833 Helix-turn-helix domain HPY05_14565 PF00593 TonB dependent receptor HPY05_14565 PF07715 TonB-dependent Receptor Plug Domain HPY05_14575 PF00871 Acetokinase family HPY05_14580 PF01022 Bacterial regulatory protein, arsR family HPY05_14585 PF01758 Sodium Bile acid symporter family HPY05_14605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_14605 PF03466 LysR substrate binding domain HPY05_14615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_14615 PF00512 His Kinase A (phospho-acceptor) domain HPY05_14615 PF00672 HAMP domain HPY05_14620 PF00486 Transcriptional regulatory protein, C terminal HPY05_14620 PF00072 Response regulator receiver domain HPY05_14630 PF04542 Sigma-70 region 2 HPY05_14630 PF04545 Sigma-70, region 4 HPY05_14650 PF01261 Xylose isomerase-like TIM barrel HPY05_14655 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY05_14665 PF00596 Class II Aldolase and Adducin N-terminal domain HPY05_14670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY05_14675 PF03611 PTS system sugar-specific permease component HPY05_14680 PF08220 DeoR-like helix-turn-helix domain HPY05_14680 PF00455 DeoR C terminal sensor domain HPY05_14695 PF06736 Protein of unknown function (DUF1211) HPY05_14705 PF00857 Isochorismatase family HPY05_14710 PF02678 Pirin HPY05_14710 PF17954 Quercetinase C-terminal cupin domain HPY05_14715 PF03466 LysR substrate binding domain HPY05_14715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_14720 PF00128 Alpha amylase, catalytic domain HPY05_14725 PF00132 Bacterial transferase hexapeptide (six repeats) HPY05_14740 PF00486 Transcriptional regulatory protein, C terminal HPY05_14740 PF00072 Response regulator receiver domain HPY05_14745 PF14827 Double sensory domain of two-component sensor kinase HPY05_14745 PF13426 PAS domain HPY05_14745 PF00512 His Kinase A (phospho-acceptor) domain HPY05_14745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_14745 PF00672 HAMP domain HPY05_14780 PF03466 LysR substrate binding domain HPY05_14780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_14785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_14785 PF00672 HAMP domain HPY05_14785 PF02743 Cache domain HPY05_14790 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY05_14795 PF07943 Penicillin-binding protein 5, C-terminal domain HPY05_14795 PF00768 D-alanyl-D-alanine carboxypeptidase HPY05_14810 PF00194 Eukaryotic-type carbonic anhydrase HPY05_14815 PF02347 Glycine cleavage system P-protein HPY05_14820 PF01597 Glycine cleavage H-protein HPY05_14825 PF00464 Serine hydroxymethyltransferase HPY05_14835 PF08669 Glycine cleavage T-protein C-terminal barrel domain HPY05_14835 PF01571 Aminomethyltransferase folate-binding domain HPY05_14840 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY05_14840 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY05_14840 PF03129 Anticodon binding domain HPY05_14840 PF02824 TGS domain HPY05_14845 PF00707 Translation initiation factor IF-3, C-terminal domain HPY05_14845 PF05198 Translation initiation factor IF-3, N-terminal domain HPY05_14850 PF01632 Ribosomal protein L35 HPY05_14855 PF00453 Ribosomal protein L20 HPY05_14860 PF13495 Phage integrase, N-terminal SAM-like domain HPY05_14860 PF00589 Phage integrase family HPY05_14865 PF01965 DJ-1/PfpI family HPY05_14865 PF12833 Helix-turn-helix domain HPY05_14935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY05_15030 PF02567 Phenazine biosynthesis-like protein HPY05_15055 PF00132 Bacterial transferase hexapeptide (six repeats) HPY05_15065 PF00583 Acetyltransferase (GNAT) family HPY05_15095 PF02567 Phenazine biosynthesis-like protein HPY05_15395 PF00561 alpha/beta hydrolase fold HPY05_15500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY05_15505 PF00132 Bacterial transferase hexapeptide (six repeats) HPY05_15550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY05_15560 PF13286 Phosphohydrolase-associated domain HPY05_15560 PF01966 HD domain HPY05_15600 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HPY05_15610 PF00583 Acetyltransferase (GNAT) family HPY05_15670 PF02016 LD-carboxypeptidase N-terminal domain HPY05_15670 PF17676 LD-carboxypeptidase C-terminal domain HPY05_15770 PF07859 alpha/beta hydrolase fold HPY05_15820 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HPY05_15835 PF08378 Nuclease-related domain HPY05_15845 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HPY05_15880 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HPY05_15940 PF01966 HD domain HPY05_15965 PF00583 Acetyltransferase (GNAT) family HPY05_15980 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB HPY05_15985 PF01381 Helix-turn-helix HPY05_16045 PF00583 Acetyltransferase (GNAT) family HPY05_16050 PF12833 Helix-turn-helix domain HPY05_16050 PF01965 DJ-1/PfpI family HPY05_16080 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY05_16080 PF01872 RibD C-terminal domain HPY05_16095 PF07859 alpha/beta hydrolase fold HPY05_16165 PF06271 RDD family HPY05_16285 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HPY05_16295 PF04607 Region found in RelA / SpoT proteins HPY05_16615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY05_16700 PF09722 Protein of unknown function (DUF2384) HPY05_16715 PF01797 Transposase IS200 like HPY05_16720 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY05_16720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY05_16725 PF00691 OmpA family HPY05_16725 PF05736 OprF membrane domain HPY05_16730 PF00672 HAMP domain HPY05_16730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_16735 PF01266 FAD dependent oxidoreductase HPY05_16735 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HPY05_16740 PF00294 pfkB family carbohydrate kinase HPY05_16745 PF08244 Glycosyl hydrolases family 32 C terminal HPY05_16745 PF00251 Glycosyl hydrolases family 32 N-terminal domain HPY05_16755 PF00367 phosphotransferase system, EIIB HPY05_16755 PF02378 Phosphotransferase system, EIIC HPY05_16795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY05_16795 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY05_16810 PF04143 Sulphur transport HPY05_16825 PF00873 AcrB/AcrD/AcrF family HPY05_16830 PF00881 Nitroreductase family HPY05_16835 PF03992 Antibiotic biosynthesis monooxygenase HPY05_16840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_16840 PF03466 LysR substrate binding domain HPY05_16850 PF06942 GlpM protein HPY05_16865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY05_16865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY05_16890 PF00456 Transketolase, thiamine diphosphate binding domain HPY05_16890 PF02779 Transketolase, pyrimidine binding domain HPY05_16890 PF02780 Transketolase, C-terminal domain HPY05_16895 PF00923 Transaldolase/Fructose-6-phosphate aldolase HPY05_16900 PF04198 Putative sugar-binding domain HPY05_16905 PF00581 Rhodanese-like domain HPY05_16915 PF00899 ThiF family HPY05_16920 PF03454 MoeA C-terminal region (domain IV) HPY05_16920 PF03453 MoeA N-terminal region (domain I and II) HPY05_16920 PF00994 Probable molybdopterin binding domain HPY05_16925 PF01227 GTP cyclohydrolase I HPY05_16930 PF01641 SelR domain HPY05_16930 PF01625 Peptide methionine sulfoxide reductase HPY05_16935 PF01268 Formate--tetrahydrofolate ligase HPY05_16940 PF01741 Large-conductance mechanosensitive channel, MscL HPY05_16955 PF03466 LysR substrate binding domain HPY05_16955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_16960 PF13419 Haloacid dehalogenase-like hydrolase HPY05_16965 PF14760 Rnk N-terminus HPY05_16965 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY05_16970 PF13419 Haloacid dehalogenase-like hydrolase HPY05_16980 PF00266 Aminotransferase class-V HPY05_16990 PF00005 ABC transporter HPY05_16995 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_17000 PF00392 Bacterial regulatory proteins, gntR family HPY05_17000 PF07702 UTRA domain HPY05_17010 PF00854 POT family HPY05_17035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY05_17040 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_17045 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY05_17045 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_17050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY05_17050 PF00005 ABC transporter HPY05_17055 PF03479 Plants and Prokaryotes Conserved (PCC) domain HPY05_17055 PF00132 Bacterial transferase hexapeptide (six repeats) HPY05_17055 PF12804 MobA-like NTP transferase domain HPY05_17070 PF02798 Glutathione S-transferase, N-terminal domain HPY05_17070 PF00043 Glutathione S-transferase, C-terminal domain HPY05_17090 PF03061 Thioesterase superfamily HPY05_17100 PF12793 Sugar transport-related sRNA regulator N-term HPY05_17100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY05_17105 PF07715 TonB-dependent Receptor Plug Domain HPY05_17105 PF00593 TonB dependent receptor HPY05_17110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_17110 PF03466 LysR substrate binding domain HPY05_17115 PF00583 Acetyltransferase (GNAT) family HPY05_17115 PF13380 CoA binding domain HPY05_17115 PF13607 Succinyl-CoA ligase like flavodoxin domain HPY05_17125 PF01820 D-ala D-ala ligase N-terminus HPY05_17125 PF07478 D-ala D-ala ligase C-terminus HPY05_17135 PF01253 Translation initiation factor SUI1 HPY05_17140 PF03701 Uncharacterised protein family (UPF0181) HPY05_17155 PF00486 Transcriptional regulatory protein, C terminal HPY05_17155 PF00072 Response regulator receiver domain HPY05_17165 PF02233 NAD(P) transhydrogenase beta subunit HPY05_17170 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY05_17170 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY05_17170 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HPY05_17185 PF00990 Diguanylate cyclase, GGDEF domain HPY05_17185 PF17158 Membrane-associated sensor, integral membrane domain HPY05_17205 PF17151 Periplasmic sensor domain HPY05_17205 PF00990 Diguanylate cyclase, GGDEF domain HPY05_17235 PF08274 PhnA Zinc-Ribbon HPY05_17235 PF03831 PhnA domain HPY05_17245 PF03741 Integral membrane protein TerC family HPY05_17250 PF02872 5'-nucleotidase, C-terminal domain HPY05_17250 PF00149 Calcineurin-like phosphoesterase HPY05_17255 PF11398 Protein of unknown function (DUF2813) HPY05_17260 PF06496 Protein of unknown function (DUF1097) HPY05_17265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_17265 PF03466 LysR substrate binding domain HPY05_17270 PF01226 Formate/nitrite transporter HPY05_17275 PF04264 YceI-like domain HPY05_17280 PF01292 Prokaryotic cytochrome b561 HPY05_17290 PF00563 EAL domain HPY05_17290 PF10388 EAL-domain associated signalling protein domain HPY05_17305 PF02416 mttA/Hcf106 family HPY05_17310 PF00072 Response regulator receiver domain HPY05_17310 PF00486 Transcriptional regulatory protein, C terminal HPY05_17315 PF02702 Osmosensitive K+ channel His kinase sensor domain HPY05_17315 PF13493 Domain of unknown function (DUF4118) HPY05_17315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_17315 PF00512 His Kinase A (phospho-acceptor) domain HPY05_17320 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HPY05_17320 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HPY05_17320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY05_17320 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HPY05_17320 PF10371 Domain of unknown function HPY05_17325 PF02705 K+ potassium transporter HPY05_17330 PF01926 50S ribosome-binding GTPase HPY05_17335 PF07683 Cobalamin synthesis protein cobW C-terminal domain HPY05_17335 PF02492 CobW/HypB/UreG, nucleotide-binding domain HPY05_17340 PF00654 Voltage gated chloride channel HPY05_17350 PF00155 Aminotransferase class I and II HPY05_17355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_17355 PF00072 Response regulator receiver domain HPY05_17360 PF13476 AAA domain HPY05_17365 PF12320 Type 5 capsule protein repressor C-terminal domain HPY05_17365 PF00149 Calcineurin-like phosphoesterase HPY05_17370 PF00356 Bacterial regulatory proteins, lacI family HPY05_17370 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY05_17375 PF00381 PTS HPr component phosphorylation site HPY05_17375 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY05_17380 PF00294 pfkB family carbohydrate kinase HPY05_17385 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY05_17385 PF02378 Phosphotransferase system, EIIC HPY05_17390 PF18030 RimK PreATP-grasp domain HPY05_17390 PF08443 RimK-like ATP-grasp domain HPY05_17395 PF00155 Aminotransferase class I and II HPY05_17405 PF03477 ATP cone domain HPY05_17405 PF13597 Anaerobic ribonucleoside-triphosphate reductase HPY05_17415 PF13419 Haloacid dehalogenase-like hydrolase HPY05_17420 PF12729 Four helix bundle sensory module for signal transduction HPY05_17420 PF00672 HAMP domain HPY05_17420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_17425 PF03606 C4-dicarboxylate anaerobic carrier HPY05_17430 PF03315 Serine dehydratase beta chain HPY05_17430 PF03313 Serine dehydratase alpha chain HPY05_17435 PF00072 Response regulator receiver domain HPY05_17435 PF00196 Bacterial regulatory proteins, luxR family HPY05_17440 PF00672 HAMP domain HPY05_17440 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HPY05_17440 PF07730 Histidine kinase HPY05_17440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_17445 PF13187 4Fe-4S dicluster domain HPY05_17445 PF12838 4Fe-4S dicluster domain HPY05_17455 PF00384 Molybdopterin oxidoreductase HPY05_17455 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY05_17455 PF01568 Molydopterin dinucleotide binding domain HPY05_17460 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HPY05_17465 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY05_17475 PF01966 HD domain HPY05_17480 PF00072 Response regulator receiver domain HPY05_17480 PF00196 Bacterial regulatory proteins, luxR family HPY05_17485 PF05231 MASE1 HPY05_17485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_17485 PF07730 Histidine kinase HPY05_17490 PF07690 Major Facilitator Superfamily HPY05_17500 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_17505 PF00005 ABC transporter HPY05_17505 PF08402 TOBE domain HPY05_17510 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HPY05_17520 PF00108 Thiolase, N-terminal domain HPY05_17520 PF02803 Thiolase, C-terminal domain HPY05_17525 PF00106 short chain dehydrogenase HPY05_17530 PF02355 Protein export membrane protein HPY05_17530 PF07549 SecD/SecF GG Motif HPY05_17535 PF07549 SecD/SecF GG Motif HPY05_17535 PF13721 SecD export protein N-terminal TM region HPY05_17535 PF02355 Protein export membrane protein HPY05_17550 PF00990 Diguanylate cyclase, GGDEF domain HPY05_17550 PF17158 Membrane-associated sensor, integral membrane domain HPY05_17555 PF00483 Nucleotidyl transferase HPY05_17560 PF00704 Glycosyl hydrolases family 18 HPY05_17560 PF06483 Chitinase C HPY05_17565 PF00465 Iron-containing alcohol dehydrogenase HPY05_17575 PF02954 Bacterial regulatory protein, Fis family HPY05_17575 PF14532 Sigma-54 interaction domain HPY05_17575 PF00072 Response regulator receiver domain HPY05_17580 PF02743 Cache domain HPY05_17580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_17580 PF00512 His Kinase A (phospho-acceptor) domain HPY05_17590 PF07690 Major Facilitator Superfamily HPY05_17595 PF02887 Pyruvate kinase, alpha/beta domain HPY05_17595 PF00224 Pyruvate kinase, barrel domain HPY05_17600 PF00072 Response regulator receiver domain HPY05_17600 PF01627 Hpt domain HPY05_17600 PF17149 Periplasmic sensor domain found in signal transduction proteins HPY05_17600 PF00512 His Kinase A (phospho-acceptor) domain HPY05_17600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_17600 PF00672 HAMP domain HPY05_17605 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY05_17610 PF02142 MGS-like domain HPY05_17615 PF00857 Isochorismatase family HPY05_17620 PF01219 Prokaryotic diacylglycerol kinase HPY05_17625 PF12462 DNA helicase IV / RNA helicase N terminal HPY05_17625 PF13361 UvrD-like helicase C-terminal domain HPY05_17625 PF00580 UvrD/REP helicase N-terminal domain HPY05_17630 PF12805 FUSC-like inner membrane protein yccS HPY05_17635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_17635 PF00072 Response regulator receiver domain HPY05_17635 PF13188 PAS domain HPY05_17635 PF08448 PAS fold HPY05_17635 PF00512 His Kinase A (phospho-acceptor) domain HPY05_17660 PF03459 TOBE domain HPY05_17660 PF00005 ABC transporter HPY05_17665 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_17675 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY05_17675 PF07685 CobB/CobQ-like glutamine amidotransferase domain HPY05_17715 PF12833 Helix-turn-helix domain HPY05_17715 PF02311 AraC-like ligand binding domain HPY05_17720 PF00593 TonB dependent receptor HPY05_17720 PF07715 TonB-dependent Receptor Plug Domain HPY05_17725 PF07690 Major Facilitator Superfamily HPY05_17735 PF00668 Condensation domain HPY05_17735 PF00501 AMP-binding enzyme HPY05_17735 PF13193 AMP-binding enzyme C-terminal domain HPY05_17735 PF00550 Phosphopantetheine attachment site HPY05_17750 PF00425 chorismate binding enzyme HPY05_17755 PF13193 AMP-binding enzyme C-terminal domain HPY05_17755 PF00501 AMP-binding enzyme HPY05_17760 PF02028 BCCT, betaine/carnitine/choline family transporter HPY05_17765 PF00440 Bacterial regulatory proteins, tetR family HPY05_17765 PF13977 BetI-type transcriptional repressor, C-terminal HPY05_17770 PF00171 Aldehyde dehydrogenase family HPY05_17775 PF05199 GMC oxidoreductase HPY05_17775 PF00732 GMC oxidoreductase HPY05_17780 PF00664 ABC transporter transmembrane region HPY05_17780 PF00005 ABC transporter HPY05_17785 PF00005 ABC transporter HPY05_17785 PF00664 ABC transporter transmembrane region HPY05_17795 PF00072 Response regulator receiver domain HPY05_17795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_17795 PF00512 His Kinase A (phospho-acceptor) domain HPY05_17795 PF09308 LuxQ, periplasmic HPY05_17800 PF13407 Periplasmic binding protein domain HPY05_17810 PF01541 GIY-YIG catalytic domain HPY05_17815 PF04337 Protein of unknown function, DUF480 HPY05_17825 PF04363 Protein of unknown function (DUF496) HPY05_17835 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HPY05_17835 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HPY05_17840 PF00230 Major intrinsic protein HPY05_17845 PF01266 FAD dependent oxidoreductase HPY05_17845 PF04324 BFD-like [2Fe-2S] binding domain HPY05_17850 PF00890 FAD binding domain HPY05_17855 PF02754 Cysteine-rich domain HPY05_17855 PF13183 4Fe-4S dicluster domain HPY05_17860 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY05_17860 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY05_17865 PF00085 Thioredoxin HPY05_17870 PF07690 Major Facilitator Superfamily HPY05_17890 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_17895 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_17900 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY05_17905 PF00005 ABC transporter HPY05_17915 PF05762 VWA domain containing CoxE-like protein HPY05_17920 PF07728 AAA domain (dynein-related subfamily) HPY05_17920 PF17868 AAA lid domain HPY05_17920 PF12592 Protein of unknown function (DUF3763) HPY05_17925 PF00293 NUDIX domain HPY05_17930 PF01212 Beta-eliminating lyase HPY05_17935 PF00034 Cytochrome c HPY05_17940 PF00440 Bacterial regulatory proteins, tetR family HPY05_17940 PF08361 MAATS-type transcriptional repressor, C-terminal region HPY05_17945 PF00270 DEAD/DEAH box helicase HPY05_17945 PF00271 Helicase conserved C-terminal domain HPY05_17950 PF04336 Acyl carrier protein phosphodiesterase HPY05_17955 PF03222 Tryptophan/tyrosine permease family HPY05_17960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_17960 PF00672 HAMP domain HPY05_17960 PF12729 Four helix bundle sensory module for signal transduction HPY05_17965 PF16363 GDP-mannose 4,6 dehydratase HPY05_17970 PF03746 LamB/YcsF family HPY05_17980 PF02626 Carboxyltransferase domain, subdomain A and B HPY05_17990 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY05_17990 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY05_18000 PF00005 ABC transporter HPY05_18005 PF13472 GDSL-like Lipase/Acylhydrolase family HPY05_18010 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY05_18010 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY05_18010 PF07055 Enoyl reductase FAD binding domain HPY05_18015 PF00990 Diguanylate cyclase, GGDEF domain HPY05_18015 PF00563 EAL domain HPY05_18015 PF00498 FHA domain HPY05_18025 PF00226 DnaJ domain HPY05_18025 PF01556 DnaJ C terminal domain HPY05_18025 PF00684 DnaJ central domain HPY05_18040 PF13419 Haloacid dehalogenase-like hydrolase HPY05_18055 PF00294 pfkB family carbohydrate kinase HPY05_18060 PF00884 Sulfatase HPY05_18070 PF00270 DEAD/DEAH box helicase HPY05_18070 PF03880 DbpA RNA binding domain HPY05_18070 PF00271 Helicase conserved C-terminal domain HPY05_18075 PF08206 Ribonuclease B OB domain HPY05_18075 PF00773 RNB domain HPY05_18075 PF00575 S1 RNA binding domain HPY05_18085 PF12849 PBP superfamily domain HPY05_18090 PF01575 MaoC like domain HPY05_18095 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HPY05_18100 PF18416 N-acetylglucosamine binding protein domain 2 HPY05_18100 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HPY05_18105 PF04151 Bacterial pre-peptidase C-terminal domain HPY05_18105 PF03413 Peptidase propeptide and YPEB domain HPY05_18105 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY05_18105 PF01447 Thermolysin metallopeptidase, catalytic domain HPY05_18105 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY05_18110 PF04151 Bacterial pre-peptidase C-terminal domain HPY05_18110 PF04389 Peptidase family M28 HPY05_18115 PF00491 Arginase family HPY05_18120 PF17810 Arginine decarboxylase helical bundle domain HPY05_18120 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY05_18120 PF17944 Arginine decarboxylase C-terminal helical extension HPY05_18130 PF03448 MgtE intracellular N domain HPY05_18130 PF01769 Divalent cation transporter HPY05_18130 PF00571 CBS domain HPY05_18135 PF00166 Chaperonin 10 Kd subunit HPY05_18140 PF00118 TCP-1/cpn60 chaperonin family HPY05_18150 PF00696 Amino acid kinase family HPY05_18150 PF13840 ACT domain HPY05_18155 PF06339 Ectoine synthase HPY05_18160 PF00202 Aminotransferase class-III HPY05_18165 PF00583 Acetyltransferase (GNAT) family HPY05_18170 PF01329 Pterin 4 alpha carbinolamine dehydratase HPY05_18175 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HPY05_18180 PF13193 AMP-binding enzyme C-terminal domain HPY05_18180 PF00501 AMP-binding enzyme HPY05_18200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_18200 PF03466 LysR substrate binding domain HPY05_18210 PF00892 EamA-like transporter family HPY05_18215 PF14602 Hexapeptide repeat of succinyl-transferase HPY05_18215 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal HPY05_18215 PF00132 Bacterial transferase hexapeptide (six repeats) HPY05_18220 PF00571 CBS domain HPY05_18220 PF03471 Transporter associated domain HPY05_18220 PF01595 Cyclin M transmembrane N-terminal domain HPY05_18225 PF02566 OsmC-like protein HPY05_18230 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY05_18240 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY05_18240 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY05_18260 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY05_18270 PF00990 Diguanylate cyclase, GGDEF domain HPY05_18280 PF04397 LytTr DNA-binding domain HPY05_18280 PF00072 Response regulator receiver domain HPY05_18285 PF06580 Histidine kinase HPY05_18285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_18285 PF13492 GAF domain HPY05_18285 PF07694 5TMR of 5TMR-LYT HPY05_18300 PF00005 ABC transporter HPY05_18300 PF02687 FtsX-like permease family HPY05_18300 PF12704 MacB-like periplasmic core domain HPY05_18305 PF00005 ABC transporter HPY05_18315 PF00248 Aldo/keto reductase family HPY05_18320 PF00128 Alpha amylase, catalytic domain HPY05_18330 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY05_18335 PF12262 Bacterial virulence factor lipase N-terminal HPY05_18340 PF08447 PAS fold HPY05_18340 PF13426 PAS domain HPY05_18340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_18345 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY05_18345 PF01447 Thermolysin metallopeptidase, catalytic domain HPY05_18345 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY05_18345 PF03413 Peptidase propeptide and YPEB domain HPY05_18345 PF04151 Bacterial pre-peptidase C-terminal domain HPY05_18350 PF03922 OmpW family HPY05_18360 PF00768 D-alanyl-D-alanine carboxypeptidase HPY05_18365 PF00773 RNB domain HPY05_18365 PF08206 Ribonuclease B OB domain HPY05_18365 PF08461 Ribonuclease R winged-helix domain HPY05_18365 PF17876 Cold shock domain HPY05_18365 PF00575 S1 RNA binding domain HPY05_18370 PF00313 'Cold-shock' DNA-binding domain HPY05_18380 PF00291 Pyridoxal-phosphate dependent enzyme HPY05_18390 PF03466 LysR substrate binding domain HPY05_18390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_18400 PF01979 Amidohydrolase family HPY05_18415 PF00989 PAS fold HPY05_18415 PF00672 HAMP domain HPY05_18415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_18415 PF00512 His Kinase A (phospho-acceptor) domain HPY05_18420 PF00072 Response regulator receiver domain HPY05_18420 PF00486 Transcriptional regulatory protein, C terminal HPY05_18435 PF12167 Arm DNA-binding domain HPY05_18435 PF00589 Phage integrase family HPY05_18450 PF03466 LysR substrate binding domain HPY05_18450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_18455 PF08240 Alcohol dehydrogenase GroES-like domain HPY05_18455 PF00107 Zinc-binding dehydrogenase HPY05_18460 PF00155 Aminotransferase class I and II HPY05_18475 PF03466 LysR substrate binding domain HPY05_18475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_18480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY05_18505 PF01966 HD domain HPY05_18510 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HPY05_18510 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HPY05_18515 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HPY05_18520 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HPY05_18520 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY05_18545 PF02595 Glycerate kinase family HPY05_18550 PF02447 GntP family permease HPY05_18555 PF13556 PucR C-terminal helix-turn-helix domain HPY05_18555 PF17853 GGDEF-like domain HPY05_18555 PF05651 Putative sugar diacid recognition HPY05_18560 PF00672 HAMP domain HPY05_18560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_18565 PF01243 Pyridoxamine 5'-phosphate oxidase HPY05_18570 PF06228 Haem utilisation ChuX/HutX HPY05_18575 PF04055 Radical SAM superfamily HPY05_18580 PF03544 Gram-negative bacterial TonB protein C-terminal HPY05_18585 PF01618 MotA/TolQ/ExbB proton channel family HPY05_18590 PF02472 Biopolymer transport protein ExbD/TolR HPY05_18600 PF01032 FecCD transport family HPY05_18605 PF00005 ABC transporter HPY05_18635 PF00672 HAMP domain HPY05_18635 PF02743 Cache domain HPY05_18635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_18640 PF03476 MOSC N-terminal beta barrel domain HPY05_18640 PF03476 MOSC N-terminal beta barrel domain HPY05_18640 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY05_18640 PF03473 MOSC domain HPY05_18640 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY05_18640 PF03473 MOSC domain HPY05_18645 PF01979 Amidohydrolase family HPY05_18650 PF05958 tRNA (Uracil-5-)-methyltransferase HPY05_18655 PF05661 Protein of unknown function (DUF808) HPY05_18660 PF00990 Diguanylate cyclase, GGDEF domain HPY05_18660 PF17151 Periplasmic sensor domain HPY05_18670 PF00313 'Cold-shock' DNA-binding domain HPY05_18695 PF08448 PAS fold HPY05_18695 PF00990 Diguanylate cyclase, GGDEF domain HPY05_18700 PF00455 DeoR C terminal sensor domain HPY05_18700 PF08220 DeoR-like helix-turn-helix domain HPY05_18715 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_18720 PF14785 Maltose transport system permease protein MalF P2 domain HPY05_18720 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_18725 PF01547 Bacterial extracellular solute-binding protein HPY05_18730 PF00005 ABC transporter HPY05_18730 PF08402 TOBE domain HPY05_18735 PF13302 Acetyltransferase (GNAT) domain HPY05_18750 PF01906 Putative heavy-metal-binding HPY05_18755 PF00196 Bacterial regulatory proteins, luxR family HPY05_18765 PF01584 CheW-like domain HPY05_18765 PF00072 Response regulator receiver domain HPY05_18770 PF01047 MarR family HPY05_18775 PF00990 Diguanylate cyclase, GGDEF domain HPY05_18790 PF00990 Diguanylate cyclase, GGDEF domain HPY05_18790 PF00563 EAL domain HPY05_18790 PF03707 Bacterial signalling protein N terminal repeat HPY05_18810 PF03466 LysR substrate binding domain HPY05_18810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_18815 PF00563 EAL domain HPY05_18815 PF00990 Diguanylate cyclase, GGDEF domain HPY05_18825 PF02678 Pirin HPY05_18825 PF05726 Pirin C-terminal cupin domain HPY05_18830 PF06865 Pyrimidine/purine nucleoside phosphorylase HPY05_18840 PF07690 Major Facilitator Superfamily HPY05_18845 PF17200 Single Cache domain 2 HPY05_18845 PF00672 HAMP domain HPY05_18845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_18850 PF13654 AAA domain HPY05_18850 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY05_18860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY05_18860 PF00005 ABC transporter HPY05_18865 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY05_18870 PF00672 HAMP domain HPY05_18870 PF17200 Single Cache domain 2 HPY05_18870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_18880 PF03466 LysR substrate binding domain HPY05_18880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_18890 PF02652 L-lactate permease HPY05_18895 PF01070 FMN-dependent dehydrogenase HPY05_18905 PF03618 Kinase/pyrophosphorylase HPY05_18910 PF02896 PEP-utilising enzyme, TIM barrel domain HPY05_18910 PF00391 PEP-utilising enzyme, mobile domain HPY05_18910 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HPY05_18915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_18915 PF08447 PAS fold HPY05_18920 PF01554 MatE HPY05_18935 PF03475 3-alpha domain HPY05_18935 PF03473 MOSC domain HPY05_18940 PF00271 Helicase conserved C-terminal domain HPY05_18940 PF00270 DEAD/DEAH box helicase HPY05_18950 PF00664 ABC transporter transmembrane region HPY05_18950 PF00005 ABC transporter HPY05_18960 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY05_18970 PF01810 LysE type translocator HPY05_18975 PF12833 Helix-turn-helix domain HPY05_18990 PF01557 Fumarylacetoacetate (FAA) hydrolase family HPY05_18995 PF01047 MarR family HPY05_19000 PF02566 OsmC-like protein HPY05_19005 PF13609 Gram-negative porin HPY05_19010 PF00892 EamA-like transporter family HPY05_19015 PF00462 Glutaredoxin HPY05_19020 PF07670 Nucleoside recognition HPY05_19025 PF07670 Nucleoside recognition HPY05_19030 PF03600 Citrate transporter HPY05_19040 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HPY05_19040 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY05_19045 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY05_19045 PF06029 AlkA N-terminal domain HPY05_19050 PF07681 DoxX HPY05_19055 PF03466 LysR substrate binding domain HPY05_19055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_19075 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HPY05_19085 PF07148 Maltose operon periplasmic protein precursor (MalM) HPY05_19090 PF02264 LamB porin HPY05_19095 PF00128 Alpha amylase, catalytic domain HPY05_19095 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY05_19105 PF12729 Four helix bundle sensory module for signal transduction HPY05_19105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_19105 PF00672 HAMP domain HPY05_19120 PF00672 HAMP domain HPY05_19120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_19125 PF00990 Diguanylate cyclase, GGDEF domain HPY05_19125 PF00563 EAL domain HPY05_19135 PF00793 DAHP synthetase I family HPY05_19140 PF00005 ABC transporter HPY05_19145 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_19150 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY05_19155 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_19160 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY05_19160 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY05_19160 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY05_19160 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY05_19165 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY05_19165 PF02378 Phosphotransferase system, EIIC HPY05_19165 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY05_19170 PF08125 Mannitol dehydrogenase C-terminal domain HPY05_19170 PF01232 Mannitol dehydrogenase Rossmann domain HPY05_19175 PF05068 Mannitol repressor HPY05_19180 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY05_19210 PF13460 NAD(P)H-binding HPY05_19215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_19215 PF03466 LysR substrate binding domain HPY05_19220 PF00672 HAMP domain HPY05_19220 PF02743 Cache domain HPY05_19220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_19225 PF00106 short chain dehydrogenase HPY05_19230 PF03466 LysR substrate binding domain HPY05_19230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY05_19235 PF04013 Putative SAM-dependent RNA methyltransferase HPY05_19240 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY05_19250 PF13520 Amino acid permease HPY05_19255 PF01276 Orn/Lys/Arg decarboxylase, major domain HPY05_19255 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HPY05_19255 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HPY05_19265 PF00196 Bacterial regulatory proteins, luxR family HPY05_19265 PF03472 Autoinducer binding domain HPY05_19285 PF00171 Aldehyde dehydrogenase family HPY05_19290 PF01037 Lrp/AsnC ligand binding domain HPY05_19305 PF00474 Sodium:solute symporter family HPY05_19320 PF12833 Helix-turn-helix domain HPY05_19330 PF03781 Sulfatase-modifying factor enzyme 1 HPY05_19335 PF00196 Bacterial regulatory proteins, luxR family HPY05_19335 PF00072 Response regulator receiver domain HPY05_19340 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HPY05_19340 PF01243 Pyridoxamine 5'-phosphate oxidase HPY05_19345 PF00529 HlyD membrane-fusion protein of T1SS HPY05_19360 PF03412 Peptidase C39 family HPY05_19360 PF00664 ABC transporter transmembrane region HPY05_19360 PF00005 ABC transporter HPY05_19370 PF00072 Response regulator receiver domain HPY05_19370 PF00990 Diguanylate cyclase, GGDEF domain HPY05_19380 PF00672 HAMP domain HPY05_19380 PF02743 Cache domain HPY05_19380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_19385 PF00072 Response regulator receiver domain HPY05_19385 PF01339 CheB methylesterase HPY05_19390 PF03975 CheD chemotactic sensory transduction HPY05_19395 PF01739 CheR methyltransferase, SAM binding domain HPY05_19395 PF03705 CheR methyltransferase, all-alpha domain HPY05_19400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_19400 PF00672 HAMP domain HPY05_19400 PF02203 Tar ligand binding domain homologue HPY05_19405 PF01584 CheW-like domain HPY05_19410 PF01584 CheW-like domain HPY05_19415 PF02895 Signal transducing histidine kinase, homodimeric domain HPY05_19415 PF09078 CheY binding HPY05_19415 PF01627 Hpt domain HPY05_19415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_19415 PF01584 CheW-like domain HPY05_19420 PF00072 Response regulator receiver domain HPY05_19430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY05_19435 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_19440 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY05_19440 PF00528 Binding-protein-dependent transport system inner membrane component HPY05_19445 PF00005 ABC transporter HPY05_19445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY05_19450 PF00884 Sulfatase HPY05_19450 PF08019 Phosphoethanolamine transferase EptA/EptB HPY05_19455 PF00512 His Kinase A (phospho-acceptor) domain HPY05_19455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY05_19455 PF08521 Two-component sensor kinase N-terminal HPY05_19460 PF00486 Transcriptional regulatory protein, C terminal HPY05_19460 PF00072 Response regulator receiver domain HPY05_19470 PF00106 short chain dehydrogenase HPY05_19480 PF00501 AMP-binding enzyme HPY05_19490 PF13718 GNAT acetyltransferase 2 HPY05_19490 PF05127 Helicase HPY05_19495 PF13416 Bacterial extracellular solute-binding protein HPY05_19515 PF00216 Bacterial DNA-binding protein HPY05_19540 PF06986 Type-1V conjugative transfer system mating pair stabilisation HPY05_19560 PF13361 UvrD-like helicase C-terminal domain HPY05_19560 PF00580 UvrD/REP helicase N-terminal domain HPY05_19625 PF00929 Exonuclease HPY05_19785 PF00216 Bacterial DNA-binding protein HPY05_19790 PF02810 SEC-C motif HPY05_19790 PF07517 SecA DEAD-like domain HPY05_19790 PF01043 SecA preprotein cross-linking domain HPY05_19790 PF07516 SecA Wing and Scaffold domain HPY05_19820 PF00216 Bacterial DNA-binding protein HPY05_19910 PF00817 impB/mucB/samB family HPY05_19910 PF13438 Domain of unknown function (DUF4113) HPY05_19910 PF11799 impB/mucB/samB family C-terminal domain HPY05_19915 PF00717 Peptidase S24-like HPY05_19920 PF00589 Phage integrase family HPY05_19930 PF00154 recA bacterial DNA recombination protein HPY05_19935 PF03738 Glutathionylspermidine synthase preATP-grasp HPY05_19955 PF04012 PspA/IM30 family HPY05_19970 PF02086 D12 class N6 adenine-specific DNA methyltransferase HPY05_19975 PF13700 Domain of unknown function (DUF4158) HPY05_19975 PF01526 Tn3 transposase DDE domain HPY05_19990 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HPY05_20000 PF00239 Resolvase, N terminal domain HPY05_20000 PF02796 Helix-turn-helix domain of resolvase HPY05_20125 PF00816 H-NS histone family HPY05_20135 PF01320 Colicin immunity protein / pyocin immunity protein HPY05_20215 PF01555 DNA methylase HPY05_20215 PF18273 Type III R-M EcoP15I C-terminal domain HPY05_20220 PF04851 Type III restriction enzyme, res subunit HPY05_20220 PF08774 VRR-NUC domain HPY05_20240 PF02743 Cache domain HPY05_20240 PF00672 HAMP domain HPY05_20240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY05_20245 PF00990 Diguanylate cyclase, GGDEF domain HPY05_20245 PF03707 Bacterial signalling protein N terminal repeat HPY05_20245 PF00563 EAL domain HPY05_20405 PF06965 Na+/H+ antiporter 1 HPY05_20405 PF01343 Peptidase family S49 HPY05_20565 PF14706 Transposase DNA-binding HPY05_20565 PF01609 Transposase DDE domain HPY05_20565 PF02281 Transposase Tn5 dimerisation domain HPY05_20600 PF06733 DEAD_2 HPY05_20600 PF13307 Helicase C-terminal domain HPY05_20640 PF13361 UvrD-like helicase C-terminal domain HPY05_20640 PF00580 UvrD/REP helicase N-terminal domain HPY05_20675 PF02767 DNA polymerase III beta subunit, central domain HPY05_20675 PF00712 DNA polymerase III beta subunit, N-terminal domain HPY05_20675 PF02768 DNA polymerase III beta subunit, C-terminal domain HPY05_20685 PF01051 Initiator Replication protein HPY05_20690 PF07715 TonB-dependent Receptor Plug Domain HPY05_20690 PF00593 TonB dependent receptor HPY05_20770 PF00795 Carbon-nitrogen hydrolase HPY05_20845 PF01653 NAD-dependent DNA ligase adenylation domain HPY05_20845 PF00533 BRCA1 C Terminus (BRCT) domain HPY05_20845 PF03120 NAD-dependent DNA ligase OB-fold domain HPY05_20860 PF10502 Signal peptidase, peptidase S26 HPY05_20885 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY05_20885 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY05_21000 PF17762 HTH domain found in ParB protein HPY05_21000 PF02195 ParB-like nuclease domain