locus-tag class description HPY09_00005 PF11638 DnaA N-terminal domain HPY09_00005 PF08299 Bacterial dnaA protein helix-turn-helix HPY09_00005 PF00308 Bacterial dnaA protein HPY09_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HPY09_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HPY09_00010 PF02767 DNA polymerase III beta subunit, central domain HPY09_00015 PF02463 RecF/RecN/SMC N terminal domain HPY09_00020 PF00204 DNA gyrase B HPY09_00020 PF00986 DNA gyrase B subunit, carboxyl terminus HPY09_00020 PF18053 DNA gyrase B subunit insert domain HPY09_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_00020 PF01751 Toprim domain HPY09_00030 PF00011 Hsp20/alpha crystallin family HPY09_00035 PF00155 Aminotransferase class I and II HPY09_00040 PF02092 Glycyl-tRNA synthetase beta subunit HPY09_00040 PF05746 DALR anticodon binding domain HPY09_00045 PF02091 Glycyl-tRNA synthetase alpha subunit HPY09_00050 PF01169 Uncharacterized protein family UPF0016 HPY09_00060 PF01206 Sulfurtransferase TusA HPY09_00070 PF08240 Alcohol dehydrogenase GroES-like domain HPY09_00070 PF00107 Zinc-binding dehydrogenase HPY09_00075 PF00585 C-terminal regulatory domain of Threonine dehydratase HPY09_00075 PF00291 Pyridoxal-phosphate dependent enzyme HPY09_00080 PF00920 Dehydratase family HPY09_00085 PF01063 Amino-transferase class IV HPY09_00095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY09_00095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY09_00095 PF00205 Thiamine pyrophosphate enzyme, central domain HPY09_00100 PF01078 Magnesium chelatase, subunit ChlI HPY09_00100 PF13335 Magnesium chelatase, subunit ChlI C-terminal HPY09_00105 PF01553 Acyltransferase HPY09_00110 PF01323 DSBA-like thioredoxin domain HPY09_00115 PF01636 Phosphotransferase enzyme family HPY09_00120 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HPY09_00120 PF13746 4Fe-4S dicluster domain HPY09_00120 PF12801 4Fe-4S binding domain HPY09_00125 PF06288 Protein of unknown function (DUF1040) HPY09_00135 PF07070 SpoOM protein HPY09_00140 PF03006 Haemolysin-III related HPY09_00150 PF02386 Cation transport protein HPY09_00155 PF02254 TrkA-N domain HPY09_00155 PF02080 TrkA-C domain HPY09_00160 PF01189 16S rRNA methyltransferase RsmB/F HPY09_00160 PF01029 NusB family HPY09_00165 PF02911 Formyl transferase, C-terminal domain HPY09_00165 PF00551 Formyl transferase HPY09_00170 PF01327 Polypeptide deformylase HPY09_00175 PF01476 LysM domain HPY09_00180 PF17782 DprA winged helix domain HPY09_00180 PF02481 DNA recombination-mediator protein A HPY09_00185 PF04361 Protein of unknown function (DUF494) HPY09_00190 PF01396 Topoisomerase DNA binding C4 zinc finger HPY09_00195 PF02222 ATP-grasp domain HPY09_00195 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HPY09_00200 PF00731 AIR carboxylase HPY09_00205 PF01300 Telomere recombination HPY09_00210 PF01218 Coproporphyrinogen III oxidase HPY09_00215 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HPY09_00215 PF01488 Shikimate / quinate 5-dehydrogenase HPY09_00215 PF08501 Shikimate dehydrogenase substrate binding domain HPY09_00225 PF00132 Bacterial transferase hexapeptide (six repeats) HPY09_00260 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HPY09_00265 PF13667 ThiC-associated domain HPY09_00265 PF01964 Radical SAM ThiC family HPY09_00270 PF02581 Thiamine monophosphate synthase HPY09_00275 PF00899 ThiF family HPY09_00280 PF02597 ThiS family HPY09_00285 PF05690 Thiazole biosynthesis protein ThiG HPY09_00290 PF06968 Biotin and Thiamin Synthesis associated domain HPY09_00290 PF04055 Radical SAM superfamily HPY09_00295 PF01321 Creatinase/Prolidase N-terminal domain HPY09_00295 PF00557 Metallopeptidase family M24 HPY09_00295 PF01321 Creatinase/Prolidase N-terminal domain HPY09_00295 PF00557 Metallopeptidase family M24 HPY09_00300 PF03466 LysR substrate binding domain HPY09_00300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_00305 PF07690 Major Facilitator Superfamily HPY09_00315 PF01037 Lrp/AsnC ligand binding domain HPY09_00320 PF00563 EAL domain HPY09_00320 PF08448 PAS fold HPY09_00320 PF00990 Diguanylate cyclase, GGDEF domain HPY09_00325 PF04445 Putative SAM-dependent methyltransferase HPY09_00335 PF00892 EamA-like transporter family HPY09_00340 PF00582 Universal stress protein family HPY09_00345 PF00210 Ferritin-like domain HPY09_00350 PF10625 Universal stress protein B (UspB) HPY09_00365 PF02646 RmuC family HPY09_00370 PF01209 ubiE/COQ5 methyltransferase family HPY09_00375 PF02036 SCP-2 sterol transfer family HPY09_00380 PF03109 ABC1 family HPY09_00385 PF02416 mttA/Hcf106 family HPY09_00390 PF02416 mttA/Hcf106 family HPY09_00395 PF00902 Sec-independent protein translocase protein (TatC) HPY09_00400 PF00034 Cytochrome c HPY09_00400 PF03150 Di-haem cytochrome c peroxidase HPY09_00405 PF01554 MatE HPY09_00415 PF01726 LexA DNA binding domain HPY09_00415 PF00717 Peptidase S24-like HPY09_00420 PF01553 Acyltransferase HPY09_00425 PF01040 UbiA prenyltransferase family HPY09_00430 PF04345 Chorismate lyase HPY09_00435 PF03748 Flagellar basal body-associated protein FliL HPY09_00440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_00440 PF02203 Tar ligand binding domain homologue HPY09_00440 PF00672 HAMP domain HPY09_00445 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HPY09_00445 PF01694 Rhomboid family HPY09_00450 PF00581 Rhodanese-like domain HPY09_00455 PF01026 TatD related DNase HPY09_00460 PF00490 Delta-aminolevulinic acid dehydratase HPY09_00470 PF00476 DNA polymerase family A HPY09_00470 PF01612 3'-5' exonuclease HPY09_00470 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY09_00470 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY09_00475 PF01926 50S ribosome-binding GTPase HPY09_00480 PF00034 Cytochrome c HPY09_00490 PF04220 Der GTPase activator (YihI) HPY09_00495 PF10675 Protein of unknown function (DUF2489) HPY09_00500 PF04055 Radical SAM superfamily HPY09_00500 PF06969 HemN C-terminal domain HPY09_00505 PF07219 HemY protein N-terminus HPY09_00505 PF07719 Tetratricopeptide repeat HPY09_00510 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HPY09_00515 PF02602 Uroporphyrinogen-III synthase HemD HPY09_00520 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HPY09_00520 PF03900 Porphobilinogen deaminase, C-terminal domain HPY09_00525 PF12633 Adenylate cyclase NT domain HPY09_00525 PF01295 Adenylate cyclase, class-I HPY09_00530 PF01491 Frataxin-like domain HPY09_00540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HPY09_00540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY09_00545 PF01678 Diaminopimelate epimerase HPY09_00550 PF04340 Protein of unknown function, DUF484 HPY09_00555 PF00589 Phage integrase family HPY09_00555 PF02899 Phage integrase, N-terminal SAM-like domain HPY09_00560 PF13419 Haloacid dehalogenase-like hydrolase HPY09_00565 PF08495 FIST N domain HPY09_00565 PF10442 FIST C domain HPY09_00565 PF00990 Diguanylate cyclase, GGDEF domain HPY09_00565 PF00563 EAL domain HPY09_00585 PF12146 Serine aminopeptidase, S33 HPY09_00590 PF01810 LysE type translocator HPY09_00595 PF08668 HDOD domain HPY09_00595 PF00563 EAL domain HPY09_00600 PF00210 Ferritin-like domain HPY09_00635 PF02881 SRP54-type protein, helical bundle domain HPY09_00635 PF00448 SRP54-type protein, GTPase domain HPY09_00640 PF00005 ABC transporter HPY09_00645 PF18075 FtsX extracellular domain HPY09_00650 PF04542 Sigma-70 region 2 HPY09_00650 PF00140 Sigma-70 factor, region 1.2 HPY09_00650 PF04545 Sigma-70, region 4 HPY09_00655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY09_00655 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY09_00660 PF00440 Bacterial regulatory proteins, tetR family HPY09_00670 PF05958 tRNA (Uracil-5-)-methyltransferase HPY09_00675 PF00593 TonB dependent receptor HPY09_00675 PF07715 TonB-dependent Receptor Plug Domain HPY09_00680 PF05922 Peptidase inhibitor I9 HPY09_00680 PF04151 Bacterial pre-peptidase C-terminal domain HPY09_00680 PF00082 Subtilase family HPY09_00685 PF01177 Asp/Glu/Hydantoin racemase HPY09_00750 PF00962 Adenosine/AMP deaminase HPY09_00755 PF13188 PAS domain HPY09_00755 PF03707 Bacterial signalling protein N terminal repeat HPY09_00755 PF00990 Diguanylate cyclase, GGDEF domain HPY09_00755 PF00563 EAL domain HPY09_00760 PF02954 Bacterial regulatory protein, Fis family HPY09_00760 PF00072 Response regulator receiver domain HPY09_00760 PF00158 Sigma-54 interaction domain HPY09_00765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_00765 PF00512 His Kinase A (phospho-acceptor) domain HPY09_00765 PF00989 PAS fold HPY09_00775 PF00120 Glutamine synthetase, catalytic domain HPY09_00775 PF03951 Glutamine synthetase, beta-Grasp domain HPY09_00795 PF03631 Virulence factor BrkB HPY09_00800 PF02580 D-Tyr-tRNA(Tyr) deacylase HPY09_00805 PF00583 Acetyltransferase (GNAT) family HPY09_00805 PF09500 Putative thioesterase (yiiD_Cterm) HPY09_00815 PF01293 Phosphoenolpyruvate carboxykinase HPY09_00820 PF01430 Hsp33 protein HPY09_00825 PF01479 S4 domain HPY09_00830 PF11356 Type II secretion system protein C HPY09_00835 PF00263 Bacterial type II and III secretion system protein HPY09_00835 PF03958 Bacterial type II/III secretion system short domain HPY09_00840 PF00437 Type II/IV secretion system protein HPY09_00845 PF00482 Type II secretion system (T2SS), protein F HPY09_00850 PF07963 Prokaryotic N-terminal methylation motif HPY09_00850 PF08334 Type II secretion system (T2SS), protein G HPY09_00855 PF12019 Type II transport protein GspH HPY09_00860 PF02501 Type II secretion system (T2SS), protein I HPY09_00860 PF07963 Prokaryotic N-terminal methylation motif HPY09_00865 PF11612 Type II secretion system (T2SS), protein J HPY09_00865 PF07963 Prokaryotic N-terminal methylation motif HPY09_00870 PF03934 Type II secretion system (T2SS), protein K HPY09_00875 PF05134 Type II secretion system (T2SS), protein L HPY09_00875 PF12693 GspL periplasmic domain HPY09_00880 PF04612 Type II secretion system (T2SS), protein M HPY09_00885 PF01203 Type II secretion system (T2SS), protein N HPY09_00890 PF00459 Inositol monophosphatase family HPY09_00895 PF00293 NUDIX domain HPY09_00900 PF01521 Iron-sulphur cluster biosynthesis HPY09_00900 PF01106 NifU-like domain HPY09_00905 PF00156 Phosphoribosyl transferase domain HPY09_00915 PF00561 alpha/beta hydrolase fold HPY09_00925 PF17674 HHH domain HPY09_00925 PF00575 S1 RNA binding domain HPY09_00925 PF09371 Tex-like protein N-terminal domain HPY09_00925 PF16921 Tex protein YqgF-like domain HPY09_00930 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY09_00930 PF03449 Transcription elongation factor, N-terminal HPY09_00935 PF00990 Diguanylate cyclase, GGDEF domain HPY09_00935 PF17152 Periplasmic sensor domain HPY09_00940 PF00486 Transcriptional regulatory protein, C terminal HPY09_00940 PF00072 Response regulator receiver domain HPY09_00945 PF00512 His Kinase A (phospho-acceptor) domain HPY09_00945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_00945 PF00672 HAMP domain HPY09_00950 PF00860 Permease family HPY09_00955 PF00271 Helicase conserved C-terminal domain HPY09_00955 PF17191 RecG wedge domain HPY09_00955 PF00270 DEAD/DEAH box helicase HPY09_00960 PF04607 Region found in RelA / SpoT proteins HPY09_00960 PF13291 ACT domain HPY09_00960 PF02824 TGS domain HPY09_00965 PF01192 RNA polymerase Rpb6 HPY09_00970 PF00625 Guanylate kinase HPY09_00975 PF02592 Putative vitamin uptake transporter HPY09_00980 PF00474 Sodium:solute symporter family HPY09_00990 PF03471 Transporter associated domain HPY09_00990 PF00999 Sodium/hydrogen exchanger family HPY09_00990 PF02080 TrkA-C domain HPY09_00995 PF00072 Response regulator receiver domain HPY09_00995 PF00196 Bacterial regulatory proteins, luxR family HPY09_01000 PF11412 Disulphide bond corrector protein DsbC HPY09_01000 PF02683 Cytochrome C biogenesis protein transmembrane region HPY09_01005 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY09_01005 PF11852 Domain of unknown function (DUF3372) HPY09_01005 PF17967 Pullulanase N2 domain HPY09_01005 PF18494 Pullulanase Ins domain HPY09_01005 PF03714 Bacterial pullanase-associated domain HPY09_01010 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY09_01015 PF00206 Lyase HPY09_01015 PF10415 Fumarase C C-terminus HPY09_01020 PF00990 Diguanylate cyclase, GGDEF domain HPY09_01020 PF17158 Membrane-associated sensor, integral membrane domain HPY09_01025 PF04186 FxsA cytoplasmic membrane protein HPY09_01030 PF00588 SpoU rRNA Methylase family HPY09_01035 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY09_01035 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY09_01040 PF00672 HAMP domain HPY09_01040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_01040 PF00512 His Kinase A (phospho-acceptor) domain HPY09_01040 PF16527 Two-component sensor protein CpxA, periplasmic domain HPY09_01045 PF00486 Transcriptional regulatory protein, C terminal HPY09_01045 PF00072 Response regulator receiver domain HPY09_01055 PF16916 Dimerisation domain of Zinc Transporter HPY09_01055 PF01545 Cation efflux family HPY09_01060 PF00365 Phosphofructokinase HPY09_01065 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HPY09_01070 PF06005 Cell division protein ZapB HPY09_01075 PF02219 Methylenetetrahydrofolate reductase HPY09_01080 PF00696 Amino acid kinase family HPY09_01080 PF00742 Homoserine dehydrogenase HPY09_01080 PF03447 Homoserine dehydrogenase, NAD binding domain HPY09_01090 PF01340 Met Apo-repressor, MetJ HPY09_01095 PF03949 Malic enzyme, NAD binding domain HPY09_01095 PF00390 Malic enzyme, N-terminal domain HPY09_01100 PF01197 Ribosomal protein L31 HPY09_01105 PF17764 3′ DNA-binding domain (3′BD) HPY09_01105 PF18074 Primosomal protein N C-terminal domain HPY09_01105 PF00271 Helicase conserved C-terminal domain HPY09_01105 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HPY09_01105 PF00270 DEAD/DEAH box helicase HPY09_01110 PF00356 Bacterial regulatory proteins, lacI family HPY09_01115 PF05036 Sporulation related domain HPY09_01120 PF00227 Proteasome subunit HPY09_01125 PF10431 C-terminal, D2-small domain, of ClpB protein HPY09_01125 PF07724 AAA domain (Cdc48 subfamily) HPY09_01125 PF00004 ATPase family associated with various cellular activities (AAA) HPY09_01130 PF01040 UbiA prenyltransferase family HPY09_01135 PF03737 Aldolase/RraA HPY09_01140 PF01554 MatE HPY09_01145 PF00121 Triosephosphate isomerase HPY09_01165 PF08220 DeoR-like helix-turn-helix domain HPY09_01165 PF00455 DeoR C terminal sensor domain HPY09_01170 PF00166 Chaperonin 10 Kd subunit HPY09_01175 PF00118 TCP-1/cpn60 chaperonin family HPY09_01185 PF04055 Radical SAM superfamily HPY09_01190 PF01132 Elongation factor P (EF-P) OB domain HPY09_01190 PF09285 Elongation factor P, C-terminal HPY09_01190 PF08207 Elongation factor P (EF-P) KOW-like domain HPY09_01195 PF02313 Fumarate reductase subunit D HPY09_01200 PF02300 Fumarate reductase subunit C HPY09_01205 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY09_01205 PF13183 4Fe-4S dicluster domain HPY09_01210 PF02910 Fumarate reductase flavoprotein C-term HPY09_01210 PF00890 FAD binding domain HPY09_01215 PF00152 tRNA synthetases class II (D, K and N) HPY09_01220 PF00581 Rhodanese-like domain HPY09_01225 PF02556 Preprotein translocase subunit SecB HPY09_01230 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HPY09_01230 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HPY09_01235 PF00132 Bacterial transferase hexapeptide (six repeats) HPY09_01235 PF06426 Serine acetyltransferase, N-terminal HPY09_01245 PF00311 Phosphoenolpyruvate carboxylase HPY09_01250 PF01546 Peptidase family M20/M25/M40 HPY09_01250 PF07687 Peptidase dimerisation domain HPY09_01255 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY09_01255 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY09_01260 PF00696 Amino acid kinase family HPY09_01265 PF00764 Arginosuccinate synthase HPY09_01270 PF14698 Argininosuccinate lyase C-terminal HPY09_01270 PF00206 Lyase HPY09_01280 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY09_01280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY09_01285 PF00462 Glutaredoxin HPY09_01285 PF08534 Redoxin HPY09_01290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_01290 PF03466 LysR substrate binding domain HPY09_01295 PF00905 Penicillin binding protein transpeptidase domain HPY09_01295 PF17092 Penicillin-binding protein OB-like domain HPY09_01295 PF00912 Transglycosylase HPY09_01320 PF00263 Bacterial type II and III secretion system protein HPY09_01320 PF07660 Secretin and TonB N terminus short domain HPY09_01320 PF03958 Bacterial type II/III secretion system short domain HPY09_01320 PF11741 AMIN domain HPY09_01325 PF01202 Shikimate kinase HPY09_01330 PF01761 3-dehydroquinate synthase HPY09_01340 PF02086 D12 class N6 adenine-specific DNA methyltransferase HPY09_01345 PF00834 Ribulose-phosphate 3 epimerase family HPY09_01350 PF13419 Haloacid dehalogenase-like hydrolase HPY09_01355 PF00579 tRNA synthetases class I (W and Y) HPY09_01375 PF00919 Uncharacterized protein family UPF0004 HPY09_01375 PF18693 TRAM domain HPY09_01375 PF04055 Radical SAM superfamily HPY09_01380 PF00117 Glutamine amidotransferase class-I HPY09_01385 PF00202 Aminotransferase class-III HPY09_01390 PF04958 Arginine N-succinyltransferase beta subunit HPY09_01395 PF00171 Aldehyde dehydrogenase family HPY09_01405 PF13545 Crp-like helix-turn-helix domain HPY09_01405 PF00027 Cyclic nucleotide-binding domain HPY09_01410 PF00485 Phosphoribulokinase / Uridine kinase family HPY09_01415 PF06794 Uncharacterised protein family (UPF0270) HPY09_01420 PF00561 alpha/beta hydrolase fold HPY09_01430 PF00005 ABC transporter HPY09_01430 PF12848 ABC transporter HPY09_01435 PF02525 Flavodoxin-like fold HPY09_01440 PF00999 Sodium/hydrogen exchanger family HPY09_01440 PF02254 TrkA-N domain HPY09_01450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY09_01455 PF01112 Asparaginase HPY09_01460 PF00709 Adenylosuccinate synthetase HPY09_01465 PF08238 Sel1 repeat HPY09_01470 PF11893 Domain of unknown function (DUF3413) HPY09_01470 PF00884 Sulfatase HPY09_01475 PF00773 RNB domain HPY09_01475 PF08206 Ribonuclease B OB domain HPY09_01475 PF17876 Cold shock domain HPY09_01475 PF00575 S1 RNA binding domain HPY09_01475 PF08461 Ribonuclease R winged-helix domain HPY09_01480 PF00588 SpoU rRNA Methylase family HPY09_01480 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY09_01485 PF00338 Ribosomal protein S10p/S20e HPY09_01490 PF00297 Ribosomal protein L3 HPY09_01495 PF00573 Ribosomal protein L4/L1 family HPY09_01500 PF00276 Ribosomal protein L23 HPY09_01505 PF00181 Ribosomal Proteins L2, RNA binding domain HPY09_01505 PF03947 Ribosomal Proteins L2, C-terminal domain HPY09_01510 PF00203 Ribosomal protein S19 HPY09_01515 PF00237 Ribosomal protein L22p/L17e HPY09_01520 PF00189 Ribosomal protein S3, C-terminal domain HPY09_01520 PF07650 KH domain HPY09_01525 PF00252 Ribosomal protein L16p/L10e HPY09_01530 PF00831 Ribosomal L29 protein HPY09_01535 PF00366 Ribosomal protein S17 HPY09_01540 PF00238 Ribosomal protein L14p/L23e HPY09_01545 PF00467 KOW motif HPY09_01545 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HPY09_01550 PF00673 ribosomal L5P family C-terminus HPY09_01550 PF00281 Ribosomal protein L5 HPY09_01555 PF00253 Ribosomal protein S14p/S29e HPY09_01560 PF00410 Ribosomal protein S8 HPY09_01565 PF00347 Ribosomal protein L6 HPY09_01570 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HPY09_01575 PF03719 Ribosomal protein S5, C-terminal domain HPY09_01575 PF00333 Ribosomal protein S5, N-terminal domain HPY09_01580 PF00327 Ribosomal protein L30p/L7e HPY09_01585 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HPY09_01590 PF00344 SecY translocase HPY09_01595 PF00444 Ribosomal protein L36 HPY09_01600 PF00416 Ribosomal protein S13/S18 HPY09_01605 PF00411 Ribosomal protein S11 HPY09_01610 PF00163 Ribosomal protein S4/S9 N-terminal domain HPY09_01610 PF01479 S4 domain HPY09_01615 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HPY09_01615 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HPY09_01615 PF01000 RNA polymerase Rpb3/RpoA insert domain HPY09_01620 PF01196 Ribosomal protein L17 HPY09_01630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY09_01630 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY09_01635 PF08525 Opacity-associated protein A N-terminal motif HPY09_01635 PF04225 Opacity-associated protein A LysM-like domain HPY09_01640 PF00892 EamA-like transporter family HPY09_01645 PF13673 Acetyltransferase (GNAT) domain HPY09_01650 PF00271 Helicase conserved C-terminal domain HPY09_01650 PF03880 DbpA RNA binding domain HPY09_01650 PF00270 DEAD/DEAH box helicase HPY09_01660 PF02872 5'-nucleotidase, C-terminal domain HPY09_01660 PF00149 Calcineurin-like phosphoesterase HPY09_01665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY09_01665 PF14824 Sirohaem biosynthesis protein central HPY09_01665 PF10414 Sirohaem synthase dimerisation region HPY09_01670 PF01507 Phosphoadenosine phosphosulfate reductase family HPY09_01675 PF00009 Elongation factor Tu GTP binding domain HPY09_01700 PF00005 ABC transporter HPY09_01710 PF10795 Protein of unknown function (DUF2607) HPY09_01715 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HPY09_01720 PF01625 Peptide methionine sulfoxide reductase HPY09_01725 PF17243 POTRA domain TamA domain 1 HPY09_01725 PF07244 Surface antigen variable number repeat HPY09_01725 PF01103 Surface antigen HPY09_01730 PF04357 TamB, inner membrane protein subunit of TAM complex HPY09_01735 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like HPY09_01740 PF00719 Inorganic pyrophosphatase HPY09_01745 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HPY09_01750 PF08245 Mur ligase middle domain HPY09_01750 PF02875 Mur ligase family, glutamate ligase domain HPY09_01750 PF01225 Mur ligase family, catalytic domain HPY09_01755 PF02441 Flavoprotein HPY09_01765 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_01770 PF00005 ABC transporter HPY09_01775 PF04751 Protein of unknown function (DUF615) HPY09_01780 PF01523 Putative modulator of DNA gyrase HPY09_01785 PF00571 CBS domain HPY09_01785 PF03448 MgtE intracellular N domain HPY09_01785 PF01769 Divalent cation transporter HPY09_01790 PF00381 PTS HPr component phosphorylation site HPY09_01795 PF03668 P-loop ATPase protein family HPY09_01800 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY09_01805 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY09_01810 PF04552 Sigma-54, DNA binding domain HPY09_01810 PF04963 Sigma-54 factor, core binding domain HPY09_01810 PF00309 Sigma-54 factor, Activator interacting domain (AID) HPY09_01815 PF00005 ABC transporter HPY09_01815 PF12399 Branched-chain amino acid ATP-binding cassette transporter HPY09_01820 PF03968 OstA-like protein HPY09_01835 PF00571 CBS domain HPY09_01835 PF01380 SIS domain HPY09_01840 PF01699 Sodium/calcium exchanger protein HPY09_01845 PF00005 ABC transporter HPY09_01850 PF02405 Permease MlaE HPY09_01855 PF02470 MlaD protein HPY09_01860 PF05494 MlaC protein HPY09_01870 PF01722 BolA-like protein HPY09_01875 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY09_01880 PF01553 Acyltransferase HPY09_01885 PF01042 Endoribonuclease L-PSP HPY09_01890 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HPY09_01890 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HPY09_01895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY09_01895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY09_01900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HPY09_01900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HPY09_01905 PF02562 PhoH-like protein HPY09_01905 PF13638 PIN domain HPY09_01915 PF00176 SNF2 family N-terminal domain HPY09_01915 PF18339 RapA N-terminal Tudor like domain 1 HPY09_01915 PF18337 RapA N-terminal Tudor like domain HPY09_01915 PF12137 RNA polymerase recycling family C-terminal HPY09_01915 PF00271 Helicase conserved C-terminal domain HPY09_01920 PF00849 RNA pseudouridylate synthase HPY09_01925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY09_01925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY09_01930 PF00133 tRNA synthetases class I (I, L, M and V) HPY09_01930 PF10458 Valyl tRNA synthetase tRNA binding arm HPY09_01930 PF08264 Anticodon-binding domain of tRNA HPY09_01935 PF04364 DNA polymerase III chi subunit, HolC HPY09_01940 PF02789 Cytosol aminopeptidase family, N-terminal domain HPY09_01940 PF00883 Cytosol aminopeptidase family, catalytic domain HPY09_01945 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY09_01950 PF03739 Lipopolysaccharide export system permease LptF/LptG HPY09_01965 PF00072 Response regulator receiver domain HPY09_02005 PF00694 Aconitase C-terminal domain HPY09_02010 PF00330 Aconitase family (aconitate hydratase) HPY09_02015 PF00180 Isocitrate/isopropylmalate dehydrogenase HPY09_02020 PF08502 LeuA allosteric (dimerisation) domain HPY09_02020 PF00682 HMGL-like HPY09_02030 PF01569 PAP2 superfamily HPY09_02045 PF00501 AMP-binding enzyme HPY09_02050 PF00205 Thiamine pyrophosphate enzyme, central domain HPY09_02050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY09_02050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY09_02055 PF10369 Small subunit of acetolactate synthase HPY09_02060 PF01842 ACT domain HPY09_02060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY09_02060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY09_02065 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HPY09_02070 PF01812 5-formyltetrahydrofolate cyclo-ligase family HPY09_02080 PF05164 Cell division protein ZapA HPY09_02085 PF03695 Uncharacterised protein family (UPF0149) HPY09_02090 PF01494 FAD binding domain HPY09_02095 PF01494 FAD binding domain HPY09_02110 PF03937 Flavinator of succinate dehydrogenase HPY09_02120 PF00890 FAD binding domain HPY09_02120 PF02910 Fumarate reductase flavoprotein C-term HPY09_02125 PF04542 Sigma-70 region 2 HPY09_02125 PF08281 Sigma-70, region 4 HPY09_02130 PF03873 Anti sigma-E protein RseA, C-terminal domain HPY09_02130 PF03872 Anti sigma-E protein RseA, N-terminal domain HPY09_02135 PF17188 MucB/RseB C-terminal domain HPY09_02135 PF03888 MucB/RseB N-terminal domain HPY09_02145 PF00679 Elongation factor G C-terminus HPY09_02145 PF00009 Elongation factor Tu GTP binding domain HPY09_02145 PF03144 Elongation factor Tu domain 2 HPY09_02145 PF06421 GTP-binding protein LepA C-terminus HPY09_02150 PF10502 Signal peptidase, peptidase S26 HPY09_02155 PF00035 Double-stranded RNA binding motif HPY09_02155 PF14622 Ribonuclease-III-like HPY09_02160 PF07650 KH domain HPY09_02160 PF01926 50S ribosome-binding GTPase HPY09_02165 PF11967 Recombination protein O N terminal HPY09_02165 PF02565 Recombination protein O C terminal HPY09_02170 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HPY09_02175 PF01648 4'-phosphopantetheinyl transferase superfamily HPY09_02190 PF00990 Diguanylate cyclase, GGDEF domain HPY09_02195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_02195 PF00512 His Kinase A (phospho-acceptor) domain HPY09_02195 PF00072 Response regulator receiver domain HPY09_02195 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY09_02195 PF00672 HAMP domain HPY09_02195 PF01627 Hpt domain HPY09_02200 PF05958 tRNA (Uracil-5-)-methyltransferase HPY09_02200 PF01938 TRAM domain HPY09_02205 PF13291 ACT domain HPY09_02205 PF02824 TGS domain HPY09_02205 PF04607 Region found in RelA / SpoT proteins HPY09_02210 PF03819 MazG nucleotide pyrophosphohydrolase domain HPY09_02215 PF06418 CTP synthase N-terminus HPY09_02215 PF00117 Glutamine amidotransferase class-I HPY09_02220 PF03952 Enolase, N-terminal domain HPY09_02220 PF00113 Enolase, C-terminal TIM barrel domain HPY09_02225 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY09_02225 PF01966 HD domain HPY09_02225 PF01743 Poly A polymerase head domain HPY09_02230 PF13401 AAA domain HPY09_02230 PF01471 Putative peptidoglycan binding domain HPY09_02240 PF08239 Bacterial SH3 domain HPY09_02245 PF01384 Phosphate transporter family HPY09_02250 PF01865 Protein of unknown function DUF47 HPY09_02255 PF01928 CYTH domain HPY09_02260 PF02743 Cache domain HPY09_02260 PF00672 HAMP domain HPY09_02260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_02265 PF08335 GlnD PII-uridylyltransferase HPY09_02265 PF03710 Glutamate-ammonia ligase adenylyltransferase HPY09_02270 PF00294 pfkB family carbohydrate kinase HPY09_02270 PF01467 Cytidylyltransferase-like HPY09_02275 PF02321 Outer membrane efflux protein HPY09_02280 PF00293 NUDIX domain HPY09_02285 PF06853 Protein of unknown function (DUF1249) HPY09_02290 PF00149 Calcineurin-like phosphoesterase HPY09_02295 PF05728 Uncharacterised protein family (UPF0227) HPY09_02300 PF01751 Toprim domain HPY09_02300 PF00986 DNA gyrase B subunit, carboxyl terminus HPY09_02300 PF00204 DNA gyrase B HPY09_02300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_02305 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY09_02305 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY09_02310 PF03884 DNA gyrase inhibitor YacG HPY09_02315 PF07072 Cell division protein HPY09_02320 PF01121 Dephospho-CoA kinase HPY09_02325 PF06750 Bacterial Peptidase A24 N-terminal domain HPY09_02325 PF01478 Type IV leader peptidase family HPY09_02330 PF00482 Type II secretion system (T2SS), protein F HPY09_02335 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HPY09_02335 PF00437 Type II/IV secretion system protein HPY09_02340 PF00114 Pilin (bacterial filament) HPY09_02340 PF07963 Prokaryotic N-terminal methylation motif HPY09_02345 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HPY09_02345 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HPY09_02350 PF01510 N-acetylmuramoyl-L-alanine amidase HPY09_02355 PF00258 Flavodoxin HPY09_02360 PF02899 Phage integrase, N-terminal SAM-like domain HPY09_02360 PF00589 Phage integrase family HPY09_02365 PF10411 Disulfide bond isomerase protein N-terminus HPY09_02365 PF13098 Thioredoxin-like domain HPY09_02370 PF01368 DHH family HPY09_02370 PF02272 DHHA1 domain HPY09_02370 PF17768 RecJ OB domain HPY09_02375 PF00392 Bacterial regulatory proteins, gntR family HPY09_02375 PF07729 FCD domain HPY09_02380 PF00456 Transketolase, thiamine diphosphate binding domain HPY09_02380 PF17831 Pyruvate dehydrogenase E1 component middle domain HPY09_02385 PF02817 e3 binding domain HPY09_02385 PF00364 Biotin-requiring enzyme HPY09_02385 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY09_02390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY09_02390 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY09_02400 PF01795 MraW methylase family HPY09_02405 PF04999 Cell division protein FtsL HPY09_02410 PF00905 Penicillin binding protein transpeptidase domain HPY09_02410 PF03717 Penicillin-binding Protein dimerisation domain HPY09_02415 PF08245 Mur ligase middle domain HPY09_02415 PF02875 Mur ligase family, glutamate ligase domain HPY09_02415 PF01225 Mur ligase family, catalytic domain HPY09_02420 PF08245 Mur ligase middle domain HPY09_02420 PF02875 Mur ligase family, glutamate ligase domain HPY09_02420 PF01225 Mur ligase family, catalytic domain HPY09_02425 PF00953 Glycosyl transferase family 4 HPY09_02425 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HPY09_02430 PF02875 Mur ligase family, glutamate ligase domain HPY09_02430 PF08245 Mur ligase middle domain HPY09_02435 PF01098 Cell cycle protein HPY09_02440 PF04101 Glycosyltransferase family 28 C-terminal domain HPY09_02440 PF03033 Glycosyltransferase family 28 N-terminal domain HPY09_02445 PF01225 Mur ligase family, catalytic domain HPY09_02445 PF02875 Mur ligase family, glutamate ligase domain HPY09_02445 PF08245 Mur ligase middle domain HPY09_02450 PF08478 POTRA domain, FtsQ-type HPY09_02450 PF03799 Cell division protein FtsQ HPY09_02455 PF02491 SHS2 domain inserted in FTSA HPY09_02460 PF00091 Tubulin/FtsZ family, GTPase domain HPY09_02460 PF12327 FtsZ family, C-terminal domain HPY09_02465 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HPY09_02475 PF07516 SecA Wing and Scaffold domain HPY09_02475 PF02810 SEC-C motif HPY09_02475 PF07517 SecA DEAD-like domain HPY09_02475 PF01043 SecA preprotein cross-linking domain HPY09_02480 PF00293 NUDIX domain HPY09_02485 PF05173 Dihydrodipicolinate reductase, C-terminus HPY09_02485 PF01113 Dihydrodipicolinate reductase, N-terminus HPY09_02495 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HPY09_02495 PF00117 Glutamine amidotransferase class-I HPY09_02500 PF02142 MGS-like domain HPY09_02500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HPY09_02500 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HPY09_02520 PF01925 Sulfite exporter TauE/SafE HPY09_02525 PF03466 LysR substrate binding domain HPY09_02525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_02530 PF03458 UPF0126 domain HPY09_02535 PF01497 Periplasmic binding protein HPY09_02545 PF01048 Phosphorylase superfamily HPY09_02555 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY09_02555 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY09_02560 PF04898 Glutamate synthase central domain HPY09_02560 PF01493 GXGXG motif HPY09_02560 PF00310 Glutamine amidotransferases class-II HPY09_02560 PF01645 Conserved region in glutamate synthase HPY09_02565 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY09_02565 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HPY09_02570 PF01493 GXGXG motif HPY09_02570 PF01645 Conserved region in glutamate synthase HPY09_02570 PF04898 Glutamate synthase central domain HPY09_02570 PF00310 Glutamine amidotransferases class-II HPY09_02580 PF01590 GAF domain HPY09_02580 PF00563 EAL domain HPY09_02580 PF00990 Diguanylate cyclase, GGDEF domain HPY09_02580 PF00360 Phytochrome region HPY09_02585 PF18415 Histidine kinase receptor ArcB trans-membrane domain HPY09_02585 PF00072 Response regulator receiver domain HPY09_02585 PF01627 Hpt domain HPY09_02585 PF00989 PAS fold HPY09_02585 PF00512 His Kinase A (phospho-acceptor) domain HPY09_02585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_02590 PF00486 Transcriptional regulatory protein, C terminal HPY09_02590 PF00072 Response regulator receiver domain HPY09_02600 PF03737 Aldolase/RraA HPY09_02615 PF13840 ACT domain HPY09_02615 PF01842 ACT domain HPY09_02615 PF00696 Amino acid kinase family HPY09_02615 PF00742 Homoserine dehydrogenase HPY09_02615 PF03447 Homoserine dehydrogenase, NAD binding domain HPY09_02620 PF00288 GHMP kinases N terminal domain HPY09_02620 PF08544 GHMP kinases C terminal HPY09_02625 PF00291 Pyridoxal-phosphate dependent enzyme HPY09_02625 PF14821 Threonine synthase N terminus HPY09_02630 PF01228 Glycine radical HPY09_02635 PF01261 Xylose isomerase-like TIM barrel HPY09_02640 PF03167 Uracil DNA glycosylase superfamily HPY09_02655 PF01235 Sodium:alanine symporter family HPY09_02660 PF03883 Peroxide stress protein YaaA HPY09_02670 PF01026 TatD related DNase HPY09_02675 PF01773 Na+ dependent nucleoside transporter N-terminus HPY09_02675 PF07670 Nucleoside recognition HPY09_02675 PF07662 Na+ dependent nucleoside transporter C-terminus HPY09_02685 PF01791 DeoC/LacD family aldolase HPY09_02690 PF00591 Glycosyl transferase family, a/b domain HPY09_02690 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HPY09_02690 PF02885 Glycosyl transferase family, helical bundle domain HPY09_02695 PF01676 Metalloenzyme superfamily HPY09_02700 PF01048 Phosphorylase superfamily HPY09_02710 PF18429 Domain of unknown function (DUF5609) HPY09_02720 PF18073 Rubredoxin metal binding domain HPY09_02725 PF00679 Elongation factor G C-terminus HPY09_02725 PF00009 Elongation factor Tu GTP binding domain HPY09_02725 PF03764 Elongation factor G, domain IV HPY09_02725 PF14492 Elongation Factor G, domain II HPY09_02725 PF03144 Elongation factor Tu domain 2 HPY09_02730 PF00501 AMP-binding enzyme HPY09_02735 PF00072 Response regulator receiver domain HPY09_02745 PF02929 Beta galactosidase small chain HPY09_02745 PF16353 Domain of unknown function(DUF4981) HPY09_02745 PF00703 Glycosyl hydrolases family 2 HPY09_02745 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HPY09_02745 PF02837 Glycosyl hydrolases family 2, sugar binding domain HPY09_02750 PF00356 Bacterial regulatory proteins, lacI family HPY09_02755 PF01588 Putative tRNA binding domain HPY09_02765 PF01544 CorA-like Mg2+ transporter protein HPY09_02770 PF08443 RimK-like ATP-grasp domain HPY09_02770 PF18030 RimK PreATP-grasp domain HPY09_02770 PF02080 TrkA-C domain HPY09_02775 PF00583 Acetyltransferase (GNAT) family HPY09_02785 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HPY09_02785 PF14602 Hexapeptide repeat of succinyl-transferase HPY09_02790 PF07130 YebG protein HPY09_02805 PF17946 RecC C-terminal domain HPY09_02810 PF00580 UvrD/REP helicase N-terminal domain HPY09_02810 PF13361 UvrD-like helicase C-terminal domain HPY09_02810 PF12705 PD-(D/E)XK nuclease superfamily HPY09_02815 PF13538 UvrD-like helicase C-terminal domain HPY09_02825 PF00583 Acetyltransferase (GNAT) family HPY09_02825 PF00696 Amino acid kinase family HPY09_02835 PF03562 MltA specific insert domain HPY09_02835 PF06725 3D domain HPY09_02840 PF00899 ThiF family HPY09_02845 PF02657 Fe-S metabolism associated domain HPY09_02850 PF00266 Aminotransferase class-V HPY09_02855 PF01965 DJ-1/PfpI family HPY09_02860 PF08546 Ketopantoate reductase PanE/ApbA C terminal HPY09_02860 PF02558 Ketopantoate reductase PanE/ApbA HPY09_02865 PF03502 Nucleoside-specific channel-forming protein, Tsx HPY09_02875 PF04545 Sigma-70, region 4 HPY09_02875 PF04542 Sigma-70 region 2 HPY09_02885 PF07690 Major Facilitator Superfamily HPY09_02890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY09_02900 PF05175 Methyltransferase small domain HPY09_02905 PF01722 BolA-like protein HPY09_02910 PF11973 NQRA C-terminal domain HPY09_02910 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HPY09_02915 PF03116 NQR2, RnfD, RnfE family HPY09_02920 PF04205 FMN-binding domain HPY09_02930 PF02508 Rnf-Nqr subunit, membrane protein HPY09_02935 PF00175 Oxidoreductase NAD-binding domain HPY09_02935 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY09_02935 PF00970 Oxidoreductase FAD-binding domain HPY09_02940 PF02424 ApbE family HPY09_02950 PF00817 impB/mucB/samB family HPY09_02950 PF11798 IMS family HHH motif HPY09_02960 PF00990 Diguanylate cyclase, GGDEF domain HPY09_02960 PF17158 Membrane-associated sensor, integral membrane domain HPY09_02965 PF00209 Sodium:neurotransmitter symporter family HPY09_02970 PF13006 Insertion element 4 transposase N-terminal HPY09_02970 PF01609 Transposase DDE domain HPY09_02980 PF08443 RimK-like ATP-grasp domain HPY09_02980 PF18030 RimK PreATP-grasp domain HPY09_02985 PF08443 RimK-like ATP-grasp domain HPY09_02985 PF18030 RimK PreATP-grasp domain HPY09_02990 PF01546 Peptidase family M20/M25/M40 HPY09_02990 PF07687 Peptidase dimerisation domain HPY09_02995 PF00860 Permease family HPY09_03000 PF00156 Phosphoribosyl transferase domain HPY09_03010 PF07417 Sigma factor-binding transcriptional regulator Crl HPY09_03015 PF01472 PUA domain HPY09_03015 PF00696 Amino acid kinase family HPY09_03020 PF00171 Aldehyde dehydrogenase family HPY09_03025 PF03477 ATP cone domain HPY09_03030 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY09_03030 PF01872 RibD C-terminal domain HPY09_03035 PF00677 Lumazine binding domain HPY09_03040 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY09_03040 PF00925 GTP cyclohydrolase II HPY09_03045 PF00885 6,7-dimethyl-8-ribityllumazine synthase HPY09_03050 PF01029 NusB family HPY09_03055 PF00586 AIR synthase related protein, N-terminal domain HPY09_03055 PF02769 AIR synthase related protein, C-terminal domain HPY09_03060 PF04608 Phosphatidylglycerophosphatase A HPY09_03065 PF11944 Protein of unknown function (DUF3461) HPY09_03070 PF01909 Nucleotidyltransferase domain HPY09_03070 PF08335 GlnD PII-uridylyltransferase HPY09_03070 PF01966 HD domain HPY09_03075 PF00557 Metallopeptidase family M24 HPY09_03080 PF00318 Ribosomal protein S2 HPY09_03085 PF00889 Elongation factor TS HPY09_03090 PF00696 Amino acid kinase family HPY09_03095 PF01765 Ribosome recycling factor HPY09_03100 PF01255 Putative undecaprenyl diphosphate synthase HPY09_03110 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HPY09_03110 PF13288 DXP reductoisomerase C-terminal domain HPY09_03110 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HPY09_03115 PF02163 Peptidase family M50 HPY09_03115 PF17820 PDZ domain HPY09_03120 PF07244 Surface antigen variable number repeat HPY09_03120 PF01103 Surface antigen HPY09_03125 PF03938 Outer membrane protein (OmpH-like) HPY09_03130 PF00132 Bacterial transferase hexapeptide (six repeats) HPY09_03130 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HPY09_03135 PF07977 FabA-like domain HPY09_03140 PF00132 Bacterial transferase hexapeptide (six repeats) HPY09_03140 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HPY09_03145 PF02684 Lipid-A-disaccharide synthetase HPY09_03150 PF01351 Ribonuclease HII HPY09_03155 PF02811 PHP domain HPY09_03155 PF01336 OB-fold nucleic acid binding domain HPY09_03155 PF14579 Helix-hairpin-helix motif HPY09_03155 PF07733 Bacterial DNA polymerase III alpha NTPase domain HPY09_03155 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HPY09_03160 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HPY09_03165 PF01171 PP-loop family HPY09_03165 PF09179 TilS substrate binding domain HPY09_03165 PF11734 TilS substrate C-terminal domain HPY09_03170 PF00034 Cytochrome c HPY09_03175 PF05870 Phenolic acid decarboxylase (PAD) HPY09_03180 PF00543 Nitrogen regulatory protein P-II HPY09_03185 PF03372 Endonuclease/Exonuclease/phosphatase family HPY09_03190 PF01476 LysM domain HPY09_03190 PF01464 Transglycosylase SLT domain HPY09_03195 PF16123 Hydroxyacylglutathione hydrolase C-terminus HPY09_03195 PF00753 Metallo-beta-lactamase superfamily HPY09_03200 PF08241 Methyltransferase domain HPY09_03205 PF00075 RNase H HPY09_03210 PF00929 Exonuclease HPY09_03220 PF02770 Acyl-CoA dehydrogenase, middle domain HPY09_03220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY09_03220 PF09317 Domain of unknown function (DUF1974) HPY09_03220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY09_03225 PF13580 SIS domain HPY09_03230 PF13230 Glutamine amidotransferases class-II HPY09_03235 PF00551 Formyl transferase HPY09_03240 PF00586 AIR synthase related protein, N-terminal domain HPY09_03240 PF02769 AIR synthase related protein, C-terminal domain HPY09_03250 PF08448 PAS fold HPY09_03250 PF00990 Diguanylate cyclase, GGDEF domain HPY09_03255 PF01479 S4 domain HPY09_03255 PF00849 RNA pseudouridylate synthase HPY09_03260 PF01713 Smr domain HPY09_03280 PF03173 Putative carbohydrate binding domain HPY09_03280 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HPY09_03280 PF02838 Glycosyl hydrolase family 20, domain 2 HPY09_03280 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY09_03290 PF00403 Heavy-metal-associated domain HPY09_03295 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY09_03300 PF01389 OmpA-like transmembrane domain HPY09_03300 PF00691 OmpA family HPY09_03310 PF07715 TonB-dependent Receptor Plug Domain HPY09_03315 PF04954 Siderophore-interacting protein HPY09_03315 PF08021 Siderophore-interacting FAD-binding domain HPY09_03320 PF00668 Condensation domain HPY09_03320 PF00550 Phosphopantetheine attachment site HPY09_03320 PF00501 AMP-binding enzyme HPY09_03320 PF08242 Methyltransferase domain HPY09_03355 PF00072 Response regulator receiver domain HPY09_03355 PF01584 CheW-like domain HPY09_03360 PF01739 CheR methyltransferase, SAM binding domain HPY09_03360 PF03705 CheR methyltransferase, all-alpha domain HPY09_03365 PF00460 Flagella basal body rod protein HPY09_03370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY09_03370 PF00460 Flagella basal body rod protein HPY09_03375 PF03963 Flagellar hook capping protein - N-terminal region HPY09_03375 PF13861 FlgD Tudor-like domain HPY09_03375 PF13860 FlgD Ig-like domain HPY09_03380 PF07559 Flagellar basal body protein FlaE HPY09_03380 PF00460 Flagella basal body rod protein HPY09_03380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY09_03385 PF00460 Flagella basal body rod protein HPY09_03385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY09_03390 PF00460 Flagella basal body rod protein HPY09_03390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY09_03395 PF02107 Flagellar L-ring protein HPY09_03400 PF02119 Flagellar P-ring protein HPY09_03405 PF10135 Rod binding protein HPY09_03405 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HPY09_03410 PF07196 Flagellin hook IN motif HPY09_03410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HPY09_03420 PF07196 Flagellin hook IN motif HPY09_03420 PF00669 Bacterial flagellin N-terminal helical region HPY09_03420 PF00700 Bacterial flagellin C-terminal helical region HPY09_03425 PF00669 Bacterial flagellin N-terminal helical region HPY09_03425 PF00700 Bacterial flagellin C-terminal helical region HPY09_03425 PF07196 Flagellin hook IN motif HPY09_03510 PF06071 Protein of unknown function (DUF933) HPY09_03510 PF01926 50S ribosome-binding GTPase HPY09_03515 PF01195 Peptidyl-tRNA hydrolase HPY09_03520 PF14572 Phosphoribosyl synthetase-associated domain HPY09_03520 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HPY09_03525 PF08544 GHMP kinases C terminal HPY09_03525 PF00288 GHMP kinases N terminal domain HPY09_03530 PF03550 Outer membrane lipoprotein LolB HPY09_03535 PF01488 Shikimate / quinate 5-dehydrogenase HPY09_03535 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HPY09_03535 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HPY09_03540 PF00472 RF-1 domain HPY09_03540 PF03462 PCRF domain HPY09_03545 PF13847 Methyltransferase domain HPY09_03545 PF17827 PrmC N-terminal domain HPY09_03550 PF04247 Invasion gene expression up-regulator, SirB HPY09_03555 PF13369 Transglutaminase-like superfamily HPY09_03560 PF00793 DAHP synthetase I family HPY09_03565 PF02872 5'-nucleotidase, C-terminal domain HPY09_03565 PF00149 Calcineurin-like phosphoesterase HPY09_03570 PF04073 Aminoacyl-tRNA editing domain HPY09_03575 PF00860 Permease family HPY09_03590 PF03358 NADPH-dependent FMN reductase HPY09_03595 PF03960 ArsC family HPY09_03600 PF13181 Tetratricopeptide repeat HPY09_03600 PF01435 Peptidase family M48 HPY09_03610 PF01594 AI-2E family transporter HPY09_03615 PF00672 HAMP domain HPY09_03615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_03615 PF02743 Cache domain HPY09_03620 PF00578 AhpC/TSA family HPY09_03630 PF00701 Dihydrodipicolinate synthetase family HPY09_03635 PF06804 NlpB/DapX lipoprotein HPY09_03645 PF02557 D-alanyl-D-alanine carboxypeptidase HPY09_03650 PF07687 Peptidase dimerisation domain HPY09_03650 PF01546 Peptidase family M20/M25/M40 HPY09_03655 PF03960 ArsC family HPY09_03670 PF11143 Protein of unknown function (DUF2919) HPY09_03675 PF04261 Dyp-type peroxidase family HPY09_03680 PF00669 Bacterial flagellin N-terminal helical region HPY09_03680 PF07196 Flagellin hook IN motif HPY09_03680 PF00700 Bacterial flagellin C-terminal helical region HPY09_03685 PF00669 Bacterial flagellin N-terminal helical region HPY09_03685 PF07196 Flagellin hook IN motif HPY09_03685 PF00700 Bacterial flagellin C-terminal helical region HPY09_03690 PF00700 Bacterial flagellin C-terminal helical region HPY09_03690 PF00669 Bacterial flagellin N-terminal helical region HPY09_03690 PF07196 Flagellin hook IN motif HPY09_03695 PF03646 FlaG protein HPY09_03700 PF02465 Flagellar hook-associated protein 2 N-terminus HPY09_03700 PF07196 Flagellin hook IN motif HPY09_03700 PF07195 Flagellar hook-associated protein 2 C-terminus HPY09_03710 PF02561 Flagellar protein FliS HPY09_03715 PF02954 Bacterial regulatory protein, Fis family HPY09_03715 PF06490 Flagellar regulatory protein FleQ HPY09_03715 PF00158 Sigma-54 interaction domain HPY09_03720 PF00989 PAS fold HPY09_03720 PF13493 Domain of unknown function (DUF4118) HPY09_03720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_03720 PF00512 His Kinase A (phospho-acceptor) domain HPY09_03720 PF13426 PAS domain HPY09_03720 PF08447 PAS fold HPY09_03725 PF00072 Response regulator receiver domain HPY09_03725 PF00158 Sigma-54 interaction domain HPY09_03725 PF02954 Bacterial regulatory protein, Fis family HPY09_03730 PF02049 Flagellar hook-basal body complex protein FliE HPY09_03735 PF08345 Flagellar M-ring protein C-terminal HPY09_03735 PF01514 Secretory protein of YscJ/FliF family HPY09_03740 PF14841 FliG middle domain HPY09_03740 PF14842 FliG N-terminal domain HPY09_03740 PF01706 FliG C-terminal domain HPY09_03745 PF02108 Flagellar assembly protein FliH HPY09_03750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY09_03750 PF18269 T3SS EscN ATPase C-terminal domain HPY09_03770 PF03748 Flagellar basal body-associated protein FliL HPY09_03775 PF02154 Flagellar motor switch protein FliM HPY09_03775 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY09_03780 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HPY09_03785 PF04347 Flagellar biosynthesis protein, FliO HPY09_03790 PF00813 FliP family HPY09_03795 PF01313 Bacterial export proteins, family 3 HPY09_03800 PF01311 Bacterial export proteins, family 1 HPY09_03805 PF01312 FlhB HrpN YscU SpaS Family HPY09_03810 PF01713 Smr domain HPY09_03815 PF05175 Methyltransferase small domain HPY09_03820 PF01264 Chorismate synthase HPY09_03825 PF03458 UPF0126 domain HPY09_03830 PF04315 Elongation factor P hydroxylase HPY09_03835 PF08891 YfcL protein HPY09_03840 PF03358 NADPH-dependent FMN reductase HPY09_03845 PF01266 FAD dependent oxidoreductase HPY09_03845 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HPY09_03850 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY09_03850 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY09_03855 PF11890 Domain of unknown function (DUF3410) HPY09_03855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY09_03855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY09_03860 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY09_03860 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY09_03865 PF01475 Ferric uptake regulator family HPY09_03875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_03875 PF03466 LysR substrate binding domain HPY09_03880 PF03788 LrgA family HPY09_03885 PF04172 LrgB-like family HPY09_03890 PF00258 Flavodoxin HPY09_03900 PF12697 Alpha/beta hydrolase family HPY09_03905 PF17206 SeqA protein N-terminal domain HPY09_03905 PF03925 SeqA protein C-terminal domain HPY09_03910 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY09_03910 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY09_03910 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY09_03910 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY09_03920 PF01784 NIF3 (NGG1p interacting factor 3) HPY09_03925 PF00285 Citrate synthase, C-terminal domain HPY09_03930 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY09_03935 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HPY09_03940 PF00890 FAD binding domain HPY09_03940 PF02910 Fumarate reductase flavoprotein C-term HPY09_03945 PF13085 2Fe-2S iron-sulfur cluster binding domain HPY09_03950 PF16870 2-oxoglutarate dehydrogenase C-terminal HPY09_03950 PF00676 Dehydrogenase E1 component HPY09_03950 PF16078 2-oxoglutarate dehydrogenase N-terminus HPY09_03950 PF02779 Transketolase, pyrimidine binding domain HPY09_03955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HPY09_03955 PF00364 Biotin-requiring enzyme HPY09_03955 PF02817 e3 binding domain HPY09_03960 PF00549 CoA-ligase HPY09_03960 PF08442 ATP-grasp domain HPY09_03965 PF02629 CoA binding domain HPY09_03965 PF00549 CoA-ligase HPY09_03970 PF00950 ABC 3 transport family HPY09_03975 PF00005 ABC transporter HPY09_03980 PF01297 Zinc-uptake complex component A periplasmic HPY09_03985 PF12833 Helix-turn-helix domain HPY09_03985 PF02311 AraC-like ligand binding domain HPY09_03990 PF04023 FeoA domain HPY09_03995 PF07664 Ferrous iron transport protein B C terminus HPY09_03995 PF02421 Ferrous iron transport protein B HPY09_03995 PF07670 Nucleoside recognition HPY09_04010 PF00750 tRNA synthetases class I (R) HPY09_04010 PF03485 Arginyl tRNA synthetase N terminal domain HPY09_04010 PF05746 DALR anticodon binding domain HPY09_04020 PF00675 Insulinase (Peptidase family M16) HPY09_04020 PF05193 Peptidase M16 inactive domain HPY09_04025 PF00300 Histidine phosphatase superfamily (branch 1) HPY09_04030 PF00771 FHIPEP family HPY09_04035 PF00448 SRP54-type protein, GTPase domain HPY09_04040 PF10609 NUBPL iron-transfer P-loop NTPase HPY09_04045 PF04545 Sigma-70, region 4 HPY09_04045 PF04542 Sigma-70 region 2 HPY09_04045 PF04539 Sigma-70 region 3 HPY09_04050 PF00072 Response regulator receiver domain HPY09_04055 PF04344 Chemotaxis phosphatase, CheZ HPY09_04060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_04060 PF00072 Response regulator receiver domain HPY09_04060 PF02895 Signal transducing histidine kinase, homodimeric domain HPY09_04060 PF01584 CheW-like domain HPY09_04060 PF01627 Hpt domain HPY09_04065 PF01339 CheB methylesterase HPY09_04065 PF00072 Response regulator receiver domain HPY09_04070 PF13614 AAA domain HPY09_04080 PF01584 CheW-like domain HPY09_04090 PF00005 ABC transporter HPY09_04095 PF03379 CcmB protein HPY09_04100 PF01578 Cytochrome C assembly protein HPY09_04105 PF04995 Heme exporter protein D (CcmD) HPY09_04110 PF03100 CcmE HPY09_04115 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HPY09_04115 PF01578 Cytochrome C assembly protein HPY09_04120 PF08534 Redoxin HPY09_04125 PF03918 Cytochrome C biogenesis protein HPY09_04135 PF04333 MlaA lipoprotein HPY09_04150 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HPY09_04150 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HPY09_04155 PF00462 Glutaredoxin HPY09_04160 PF01131 DNA topoisomerase HPY09_04160 PF01751 Toprim domain HPY09_04165 PF00850 Histone deacetylase domain HPY09_04180 PF00884 Sulfatase HPY09_04180 PF11893 Domain of unknown function (DUF3413) HPY09_04185 PF07208 Protein of unknown function (DUF1414) HPY09_04190 PF04245 37-kD nucleoid-associated bacterial protein HPY09_04200 PF03553 Na+/H+ antiporter family HPY09_04205 PF01118 Semialdehyde dehydrogenase, NAD binding domain HPY09_04205 PF02774 Semialdehyde dehydrogenase, dimerisation domain HPY09_04210 PF01914 MarC family integral membrane protein HPY09_04215 PF00171 Aldehyde dehydrogenase family HPY09_04215 PF00465 Iron-containing alcohol dehydrogenase HPY09_04225 PF00916 Sulfate permease family HPY09_04225 PF01740 STAS domain HPY09_04230 PF10150 Ribonuclease E/G family HPY09_04230 PF12111 Polyribonucleotide phosphorylase C terminal HPY09_04230 PF00575 S1 RNA binding domain HPY09_04235 PF00849 RNA pseudouridylate synthase HPY09_04235 PF01479 S4 domain HPY09_04240 PF02545 Maf-like protein HPY09_04245 PF02620 Large ribosomal RNA subunit accumulation protein YceD HPY09_04250 PF01783 Ribosomal L32p protein family HPY09_04255 PF02504 Fatty acid synthesis protein HPY09_04260 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY09_04260 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY09_04265 PF00698 Acyl transferase domain HPY09_04275 PF00550 Phosphopantetheine attachment site HPY09_04280 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY09_04280 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY09_04285 PF01063 Amino-transferase class IV HPY09_04290 PF02618 YceG-like family HPY09_04295 PF02223 Thymidylate kinase HPY09_04300 PF09115 DNA polymerase III, delta subunit, C terminal HPY09_04305 PF01026 TatD related DNase HPY09_04310 PF00367 phosphotransferase system, EIIB HPY09_04310 PF02378 Phosphotransferase system, EIIC HPY09_04320 PF00209 Sodium:neurotransmitter symporter family HPY09_04340 PF00224 Pyruvate kinase, barrel domain HPY09_04340 PF02887 Pyruvate kinase, alpha/beta domain HPY09_04345 PF00480 ROK family HPY09_04350 PF01584 CheW-like domain HPY09_04350 PF00072 Response regulator receiver domain HPY09_04365 PF13847 Methyltransferase domain HPY09_04375 PF01263 Aldose 1-epimerase HPY09_04380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY09_04380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY09_04385 PF01641 SelR domain HPY09_04395 PF07023 Protein of unknown function (DUF1315) HPY09_04400 PF00710 Asparaginase, N-terminal HPY09_04400 PF17763 Glutaminase/Asparaginase C-terminal domain HPY09_04405 PF01343 Peptidase family S49 HPY09_04410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY09_04410 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY09_04415 PF00551 Formyl transferase HPY09_04415 PF01842 ACT domain HPY09_04425 PF04851 Type III restriction enzyme, res subunit HPY09_04425 PF13307 Helicase C-terminal domain HPY09_04430 PF00814 Glycoprotease family HPY09_04445 PF00561 alpha/beta hydrolase fold HPY09_04450 PF00501 AMP-binding enzyme HPY09_04450 PF13193 AMP-binding enzyme C-terminal domain HPY09_04455 PF00570 HRDC domain HPY09_04455 PF01612 3'-5' exonuclease HPY09_04475 PF01966 HD domain HPY09_04475 PF13286 Phosphohydrolase-associated domain HPY09_04485 PF00155 Aminotransferase class I and II HPY09_04490 PF00425 chorismate binding enzyme HPY09_04495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY09_04495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY09_04495 PF16582 Middle domain of thiamine pyrophosphate HPY09_04500 PF12697 Alpha/beta hydrolase family HPY09_04505 PF00378 Enoyl-CoA hydratase/isomerase HPY09_04510 PF13378 Enolase C-terminal domain-like HPY09_04515 PF00501 AMP-binding enzyme HPY09_04515 PF13193 AMP-binding enzyme C-terminal domain HPY09_04520 PF03594 Benzoate membrane transport protein HPY09_04525 PF07690 Major Facilitator Superfamily HPY09_04545 PF04170 NlpE N-terminal domain HPY09_04550 PF03776 Septum formation topological specificity factor MinE HPY09_04555 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY09_04560 PF03775 Septum formation inhibitor MinC, C-terminal domain HPY09_04560 PF05209 Septum formation inhibitor MinC, N-terminal domain HPY09_04565 PF05166 YcgL domain HPY09_04570 PF13406 Transglycosylase SLT domain HPY09_04575 PF03466 LysR substrate binding domain HPY09_04575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_04580 PF01773 Na+ dependent nucleoside transporter N-terminus HPY09_04580 PF07670 Nucleoside recognition HPY09_04580 PF07662 Na+ dependent nucleoside transporter C-terminus HPY09_04585 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY09_04590 PF01568 Molydopterin dinucleotide binding domain HPY09_04590 PF00384 Molybdopterin oxidoreductase HPY09_04590 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY09_04600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_04600 PF03466 LysR substrate binding domain HPY09_04605 PF01494 FAD binding domain HPY09_04610 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HPY09_04620 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HPY09_04620 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HPY09_04665 PF00563 EAL domain HPY09_04665 PF03707 Bacterial signalling protein N terminal repeat HPY09_04665 PF13188 PAS domain HPY09_04665 PF00990 Diguanylate cyclase, GGDEF domain HPY09_04675 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HPY09_04680 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY09_04685 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HPY09_04690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY09_04695 PF02954 Bacterial regulatory protein, Fis family HPY09_04695 PF00158 Sigma-54 interaction domain HPY09_04695 PF00072 Response regulator receiver domain HPY09_04700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_04700 PF00512 His Kinase A (phospho-acceptor) domain HPY09_04710 PF05698 Bacterial trigger factor protein (TF) C-terminus HPY09_04710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY09_04710 PF05697 Bacterial trigger factor protein (TF) HPY09_04715 PF00574 Clp protease HPY09_04720 PF06689 ClpX C4-type zinc finger HPY09_04720 PF10431 C-terminal, D2-small domain, of ClpB protein HPY09_04720 PF07724 AAA domain (Cdc48 subfamily) HPY09_04725 PF02190 ATP-dependent protease La (LON) substrate-binding domain HPY09_04725 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY09_04725 PF00004 ATPase family associated with various cellular activities (AAA) HPY09_04730 PF00216 Bacterial DNA-binding protein HPY09_04735 PF13145 PPIC-type PPIASE domain HPY09_04745 PF02224 Cytidylate kinase HPY09_04750 PF00575 S1 RNA binding domain HPY09_04755 PF00216 Bacterial DNA-binding protein HPY09_04760 PF06305 Lipopolysaccharide assembly protein A domain HPY09_04765 PF18073 Rubredoxin metal binding domain HPY09_04770 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY09_04775 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HPY09_04785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_04785 PF03466 LysR substrate binding domain HPY09_04795 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY09_04795 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY09_04800 PF01037 Lrp/AsnC ligand binding domain HPY09_04805 PF17854 FtsK alpha domain HPY09_04805 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HPY09_04805 PF01580 FtsK/SpoIIIE family HPY09_04805 PF09397 Ftsk gamma domain HPY09_04810 PF02600 Disulfide bond formation protein DsbB HPY09_04815 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HPY09_04820 PF00392 Bacterial regulatory proteins, gntR family HPY09_04820 PF07840 FadR C-terminal domain HPY09_04830 PF00672 HAMP domain HPY09_04830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_04835 PF01230 HIT domain HPY09_04850 PF13036 Peptidoglycan-synthase activator LpoB HPY09_04850 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HPY09_04860 PF05728 Uncharacterised protein family (UPF0227) HPY09_04865 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY09_04880 PF16458 Beta-prism lectin HPY09_04880 PF12563 Hemolytic toxin N terminal HPY09_04880 PF07968 Leukocidin/Hemolysin toxin family HPY09_04890 PF00271 Helicase conserved C-terminal domain HPY09_04890 PF02559 CarD-like/TRCF domain HPY09_04890 PF03461 TRCF domain HPY09_04890 PF17757 UvrB interaction domain HPY09_04890 PF00270 DEAD/DEAH box helicase HPY09_04900 PF12704 MacB-like periplasmic core domain HPY09_04900 PF02687 FtsX-like permease family HPY09_04905 PF00005 ABC transporter HPY09_04910 PF12704 MacB-like periplasmic core domain HPY09_04910 PF02687 FtsX-like permease family HPY09_04920 PF03772 Competence protein HPY09_04920 PF00753 Metallo-beta-lactamase superfamily HPY09_04920 PF13567 Domain of unknown function (DUF4131) HPY09_04925 PF00664 ABC transporter transmembrane region HPY09_04925 PF00005 ABC transporter HPY09_04930 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HPY09_04935 PF03966 Trm112p-like protein HPY09_04940 PF02348 Cytidylyltransferase HPY09_04945 PF04293 SpoVR like protein HPY09_04950 PF04285 Protein of unknown function (DUF444) HPY09_04955 PF06798 PrkA serine protein kinase C-terminal domain HPY09_04955 PF08298 PrkA AAA domain HPY09_04960 PF01609 Transposase DDE domain HPY09_04960 PF13006 Insertion element 4 transposase N-terminal HPY09_04965 PF03887 YfbU domain HPY09_04975 PF04055 Radical SAM superfamily HPY09_04980 PF12729 Four helix bundle sensory module for signal transduction HPY09_04980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_04980 PF00672 HAMP domain HPY09_04990 PF01228 Glycine radical HPY09_04990 PF02901 Pyruvate formate lyase-like HPY09_05000 PF00005 ABC transporter HPY09_05005 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY09_05010 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_05015 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_05020 PF03372 Endonuclease/Exonuclease/phosphatase family HPY09_05025 PF10689 Protein of unknown function (DUF2496) HPY09_05030 PF07445 Primosomal replication protein priC HPY09_05035 PF01925 Sulfite exporter TauE/SafE HPY09_05040 PF06733 DEAD_2 HPY09_05040 PF13307 Helicase C-terminal domain HPY09_05050 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY09_05055 PF02810 SEC-C motif HPY09_05060 PF00563 EAL domain HPY09_05060 PF08668 HDOD domain HPY09_05065 PF00149 Calcineurin-like phosphoesterase HPY09_05070 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HPY09_05075 PF01406 tRNA synthetases class I (C) catalytic domain HPY09_05075 PF09190 DALR domain HPY09_05080 PF02075 Crossover junction endodeoxyribonuclease RuvC HPY09_05085 PF01330 RuvA N terminal domain HPY09_05085 PF07499 RuvA, C-terminal domain HPY09_05090 PF17864 RuvB AAA lid domain HPY09_05090 PF05491 RuvB C-terminal winged helix domain HPY09_05090 PF05496 Holliday junction DNA helicase RuvB P-loop domain HPY09_05095 PF01654 Cytochrome bd terminal oxidase subunit I HPY09_05100 PF02322 Cytochrome bd terminal oxidase subunit II HPY09_05105 PF08173 Membrane bound YbgT-like protein HPY09_05110 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HPY09_05115 PF03061 Thioesterase superfamily HPY09_05120 PF01618 MotA/TolQ/ExbB proton channel family HPY09_05125 PF02472 Biopolymer transport protein ExbD/TolR HPY09_05135 PF07676 WD40-like Beta Propeller Repeat HPY09_05135 PF04052 TolB amino-terminal domain HPY09_05140 PF00691 OmpA family HPY09_05150 PF02445 Quinolinate synthetase A protein HPY09_05160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_05160 PF00512 His Kinase A (phospho-acceptor) domain HPY09_05160 PF09308 LuxQ, periplasmic HPY09_05160 PF00072 Response regulator receiver domain HPY09_05165 PF06610 L-alanine exporter HPY09_05170 PF01238 Phosphomannose isomerase type I HPY09_05175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY09_05175 PF02378 Phosphotransferase system, EIIC HPY09_05175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY09_05180 PF12833 Helix-turn-helix domain HPY09_05190 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY09_05210 PF00171 Aldehyde dehydrogenase family HPY09_05215 PF01590 GAF domain HPY09_05215 PF00158 Sigma-54 interaction domain HPY09_05215 PF02954 Bacterial regulatory protein, Fis family HPY09_05220 PF09905 DNA-binding protein VF530 HPY09_05230 PF03441 FAD binding domain of DNA photolyase HPY09_05230 PF00875 DNA photolyase HPY09_05255 PF00717 Peptidase S24-like HPY09_05255 PF01381 Helix-turn-helix HPY09_05310 PF11799 impB/mucB/samB family C-terminal domain HPY09_05310 PF13438 Domain of unknown function (DUF4113) HPY09_05310 PF00817 impB/mucB/samB family HPY09_05315 PF13438 Domain of unknown function (DUF4113) HPY09_05315 PF00817 impB/mucB/samB family HPY09_05315 PF11799 impB/mucB/samB family C-terminal domain HPY09_05315 PF11798 IMS family HHH motif HPY09_05320 PF13438 Domain of unknown function (DUF4113) HPY09_05320 PF00817 impB/mucB/samB family HPY09_05320 PF11799 impB/mucB/samB family C-terminal domain HPY09_05325 PF00717 Peptidase S24-like HPY09_05365 PF05973 Phage derived protein Gp49-like (DUF891) HPY09_05410 PF13098 Thioredoxin-like domain HPY09_05410 PF10411 Disulfide bond isomerase protein N-terminus HPY09_05425 PF10502 Signal peptidase, peptidase S26 HPY09_05435 PF06834 TraU protein HPY09_05470 PF13322 Domain of unknown function (DUF4092) HPY09_05470 PF13402 Peptidase M60, enhancin and enhancin-like HPY09_05470 PF17291 N-terminal domain of M60-like peptidases HPY09_05500 PF00576 HIUase/Transthyretin family HPY09_05505 PF03928 Haem-degrading HPY09_05515 PF11999 Protein of unknown function (DUF3494) HPY09_05515 PF02368 Bacterial Ig-like domain (group 2) HPY09_05520 PF12697 Alpha/beta hydrolase family HPY09_05565 PF00482 Type II secretion system (T2SS), protein F HPY09_05570 PF06750 Bacterial Peptidase A24 N-terminal domain HPY09_05570 PF01478 Type IV leader peptidase family HPY09_05585 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family HPY09_05605 PF17945 Beta/Gamma crystallin HPY09_05605 PF12561 ToxR activated gene A lipoprotein domain HPY09_05620 PF12833 Helix-turn-helix domain HPY09_05630 PF18500 CadC C-terminal domain 1 HPY09_05630 PF00486 Transcriptional regulatory protein, C terminal HPY09_05635 PF00873 AcrB/AcrD/AcrF family HPY09_05650 PF01375 Heat-labile enterotoxin alpha chain HPY09_05680 PF00436 Single-strand binding protein family HPY09_05700 PF08406 CbbQ/NirQ/NorQ C-terminal HPY09_05700 PF07728 AAA domain (dynein-related subfamily) HPY09_05720 PF00092 von Willebrand factor type A domain HPY09_05725 PF04002 RadC-like JAB domain HPY09_05750 PF06122 Conjugative relaxosome accessory transposon protein HPY09_05765 PF05930 Prophage CP4-57 regulatory protein (AlpA) HPY09_05770 PF00589 Phage integrase family HPY09_05770 PF13356 Arm DNA-binding domain HPY09_05780 PF00873 AcrB/AcrD/AcrF family HPY09_05785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY09_05795 PF02470 MlaD protein HPY09_05800 PF04403 Paraquat-inducible protein A HPY09_05805 PF00924 Mechanosensitive ion channel HPY09_05805 PF05552 Conserved TM helix HPY09_05825 PF08362 YcdC-like protein, C-terminal region HPY09_05825 PF00440 Bacterial regulatory proteins, tetR family HPY09_05830 PF00171 Aldehyde dehydrogenase family HPY09_05835 PF07383 Protein of unknown function (DUF1496) HPY09_05845 PF16295 Tetracyclin repressor-like, C-terminal domain HPY09_05845 PF00440 Bacterial regulatory proteins, tetR family HPY09_05850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HPY09_05850 PF09317 Domain of unknown function (DUF1974) HPY09_05850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HPY09_05850 PF02770 Acyl-CoA dehydrogenase, middle domain HPY09_05855 PF07055 Enoyl reductase FAD binding domain HPY09_05855 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY09_05855 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY09_05860 PF01176 Translation initiation factor 1A / IF-1 HPY09_05865 PF04377 Arginine-tRNA-protein transferase, C terminus HPY09_05865 PF04376 Arginine-tRNA-protein transferase, N terminus HPY09_05870 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HPY09_05875 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HPY09_05880 PF10692 Protein of unknown function (DUF2498) HPY09_05885 PF01131 DNA topoisomerase HPY09_05885 PF01396 Topoisomerase DNA binding C4 zinc finger HPY09_05885 PF01751 Toprim domain HPY09_05885 PF08272 Topoisomerase I zinc-ribbon-like HPY09_05890 PF00483 Nucleotidyl transferase HPY09_05895 PF00534 Glycosyl transferases group 1 HPY09_05895 PF08323 Starch synthase catalytic domain HPY09_05915 PF04994 TfoX C-terminal domain HPY09_05915 PF04993 TfoX N-terminal domain HPY09_05920 PF00356 Bacterial regulatory proteins, lacI family HPY09_05925 PF02613 Nitrate reductase delta subunit HPY09_05930 PF00486 Transcriptional regulatory protein, C terminal HPY09_05930 PF00072 Response regulator receiver domain HPY09_05935 PF02698 DUF218 domain HPY09_05940 PF13847 Methyltransferase domain HPY09_05945 PF17192 MukF middle domain HPY09_05945 PF17193 MukF C-terminal domain HPY09_05945 PF03882 MukF winged-helix domain HPY09_05950 PF04288 MukE-like family HPY09_05955 PF04310 MukB N-terminal HPY09_05955 PF16330 MukB hinge domain HPY09_05960 PF01037 Lrp/AsnC ligand binding domain HPY09_05965 PF01810 LysE type translocator HPY09_05970 PF11842 Domain of unknown function (DUF3362) HPY09_05970 PF04055 Radical SAM superfamily HPY09_05970 PF08497 Radical SAM N-terminal HPY09_05975 PF00563 EAL domain HPY09_05975 PF08448 PAS fold HPY09_05975 PF08447 PAS fold HPY09_05975 PF00990 Diguanylate cyclase, GGDEF domain HPY09_05980 PF00675 Insulinase (Peptidase family M16) HPY09_05980 PF05193 Peptidase M16 inactive domain HPY09_05995 PF03466 LysR substrate binding domain HPY09_05995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_06000 PF08267 Cobalamin-independent synthase, N-terminal domain HPY09_06000 PF01717 Cobalamin-independent synthase, Catalytic domain HPY09_06010 PF03795 YCII-related domain HPY09_06015 PF03061 Thioesterase superfamily HPY09_06020 PF04279 Intracellular septation protein A HPY09_06030 PF02698 DUF218 domain HPY09_06035 PF01370 NAD dependent epimerase/dehydratase family HPY09_06045 PF01226 Formate/nitrite transporter HPY09_06050 PF06796 Periplasmic nitrate reductase protein NapE HPY09_06055 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY09_06060 PF00384 Molybdopterin oxidoreductase HPY09_06060 PF18364 Molybdopterin oxidoreductase N-terminal domain HPY09_06060 PF01568 Molydopterin dinucleotide binding domain HPY09_06080 PF02833 DHHA2 domain HPY09_06080 PF01368 DHH family HPY09_06100 PF00005 ABC transporter HPY09_06105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY09_06105 PF00005 ABC transporter HPY09_06110 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY09_06110 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_06115 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_06120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY09_06125 PF02954 Bacterial regulatory protein, Fis family HPY09_06125 PF00158 Sigma-54 interaction domain HPY09_06130 PF04012 PspA/IM30 family HPY09_06145 PF00529 HlyD membrane-fusion protein of T1SS HPY09_06145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY09_06150 PF13533 Biotin-lipoyl like HPY09_06155 PF00873 AcrB/AcrD/AcrF family HPY09_06160 PF03352 Methyladenine glycosylase HPY09_06165 PF01053 Cys/Met metabolism PLP-dependent enzyme HPY09_06170 PF13396 Phospholipase_D-nuclease N-terminal HPY09_06170 PF13091 PLD-like domain HPY09_06175 PF00209 Sodium:neurotransmitter symporter family HPY09_06180 PF00849 RNA pseudouridylate synthase HPY09_06185 PF01066 CDP-alcohol phosphatidyltransferase HPY09_06190 PF00005 ABC transporter HPY09_06195 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_06200 PF13416 Bacterial extracellular solute-binding protein HPY09_06210 PF06945 Protein of unknown function (DUF1289) HPY09_06220 PF03222 Tryptophan/tyrosine permease family HPY09_06230 PF00571 CBS domain HPY09_06230 PF03448 MgtE intracellular N domain HPY09_06230 PF01769 Divalent cation transporter HPY09_06235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_06235 PF09456 RcsC Alpha-Beta-Loop (ABL) HPY09_06235 PF00072 Response regulator receiver domain HPY09_06235 PF00512 His Kinase A (phospho-acceptor) domain HPY09_06240 PF00563 EAL domain HPY09_06240 PF03707 Bacterial signalling protein N terminal repeat HPY09_06240 PF00990 Diguanylate cyclase, GGDEF domain HPY09_06250 PF08453 Peptidase family M9 N-terminal HPY09_06250 PF01752 Collagenase HPY09_06250 PF04151 Bacterial pre-peptidase C-terminal domain HPY09_06260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY09_06260 PF12793 Sugar transport-related sRNA regulator N-term HPY09_06275 PF09101 Exotoxin A binding HPY09_06275 PF09009 Exotoxin A catalytic HPY09_06275 PF09102 Exotoxin A, targeting HPY09_06285 PF12729 Four helix bundle sensory module for signal transduction HPY09_06285 PF00672 HAMP domain HPY09_06285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_06295 PF00990 Diguanylate cyclase, GGDEF domain HPY09_06295 PF00360 Phytochrome region HPY09_06295 PF00563 EAL domain HPY09_06295 PF01590 GAF domain HPY09_06300 PF01386 Ribosomal L25p family HPY09_06305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_06305 PF00512 His Kinase A (phospho-acceptor) domain HPY09_06305 PF00989 PAS fold HPY09_06305 PF11808 Phosphate regulon sensor protein PhoR HPY09_06310 PF00072 Response regulator receiver domain HPY09_06310 PF00486 Transcriptional regulatory protein, C terminal HPY09_06320 PF04851 Type III restriction enzyme, res subunit HPY09_06320 PF00271 Helicase conserved C-terminal domain HPY09_06325 PF00849 RNA pseudouridylate synthase HPY09_06325 PF01479 S4 domain HPY09_06330 PF07690 Major Facilitator Superfamily HPY09_06340 PF13460 NAD(P)H-binding HPY09_06340 PF11066 Protein of unknown function (DUF2867) HPY09_06345 PF01554 MatE HPY09_06350 PF00005 ABC transporter HPY09_06365 PF06965 Na+/H+ antiporter 1 HPY09_06370 PF00202 Aminotransferase class-III HPY09_06375 PF16653 Saccharopine dehydrogenase C-terminal domain HPY09_06375 PF03435 Saccharopine dehydrogenase NADP binding domain HPY09_06385 PF00691 OmpA family HPY09_06385 PF05736 OprF membrane domain HPY09_06390 PF02321 Outer membrane efflux protein HPY09_06460 PF03466 LysR substrate binding domain HPY09_06460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_06470 PF01863 Protein of unknown function DUF45 HPY09_06475 PF05971 RNA methyltransferase HPY09_06490 PF04204 Homoserine O-succinyltransferase HPY09_06510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY09_06525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_06525 PF00989 PAS fold HPY09_06525 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HPY09_06525 PF17203 Single cache domain 3 HPY09_06530 PF00072 Response regulator receiver domain HPY09_06530 PF12431 Transcriptional regulator HPY09_06540 PF01584 CheW-like domain HPY09_06540 PF00072 Response regulator receiver domain HPY09_06560 PF00072 Response regulator receiver domain HPY09_06560 PF00990 Diguanylate cyclase, GGDEF domain HPY09_06585 PF07690 Major Facilitator Superfamily HPY09_06590 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HPY09_06590 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HPY09_06595 PF08544 GHMP kinases C terminal HPY09_06595 PF00288 GHMP kinases N terminal domain HPY09_06595 PF10509 Galactokinase galactose-binding signature HPY09_06600 PF01263 Aldose 1-epimerase HPY09_06610 PF00205 Thiamine pyrophosphate enzyme, central domain HPY09_06610 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY09_06610 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HPY09_06615 PF03306 Alpha-acetolactate decarboxylase HPY09_06620 PF03466 LysR substrate binding domain HPY09_06620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_06625 PF17291 N-terminal domain of M60-like peptidases HPY09_06625 PF13322 Domain of unknown function (DUF4092) HPY09_06625 PF13402 Peptidase M60, enhancin and enhancin-like HPY09_06635 PF00199 Catalase HPY09_06635 PF06628 Catalase-related immune-responsive HPY09_06645 PF00080 Copper/zinc superoxide dismutase (SODC) HPY09_06650 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) HPY09_06655 PF00361 Proton-conducting membrane transporter HPY09_06655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY09_06660 PF03466 LysR substrate binding domain HPY09_06660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_06665 PF00501 AMP-binding enzyme HPY09_06665 PF13193 AMP-binding enzyme C-terminal domain HPY09_06695 PF00206 Lyase HPY09_06695 PF10415 Fumarase C C-terminus HPY09_06705 PF01654 Cytochrome bd terminal oxidase subunit I HPY09_06710 PF02322 Cytochrome bd terminal oxidase subunit II HPY09_06715 PF00005 ABC transporter HPY09_06715 PF02687 FtsX-like permease family HPY09_06715 PF12704 MacB-like periplasmic core domain HPY09_06720 PF00005 ABC transporter HPY09_06720 PF12704 MacB-like periplasmic core domain HPY09_06720 PF02687 FtsX-like permease family HPY09_06725 PF12704 MacB-like periplasmic core domain HPY09_06725 PF00005 ABC transporter HPY09_06725 PF02687 FtsX-like permease family HPY09_06735 PF00529 HlyD membrane-fusion protein of T1SS HPY09_06745 PF00175 Oxidoreductase NAD-binding domain HPY09_06750 PF04443 Acyl-protein synthetase, LuxE HPY09_06755 PF00296 Luciferase-like monooxygenase HPY09_06760 PF00296 Luciferase-like monooxygenase HPY09_06765 PF02273 Acyl transferase HPY09_06770 PF05893 Acyl-CoA reductase (LuxC) HPY09_06775 PF09297 NADH pyrophosphatase zinc ribbon domain HPY09_06775 PF00293 NUDIX domain HPY09_06780 PF00709 Adenylosuccinate synthetase HPY09_06795 PF00977 Histidine biosynthesis protein HPY09_06800 PF00141 Peroxidase HPY09_06805 PF00232 Glycosyl hydrolase family 1 HPY09_06810 PF00356 Bacterial regulatory proteins, lacI family HPY09_06815 PF01042 Endoribonuclease L-PSP HPY09_06820 PF04074 YhcH/YjgK/YiaL HPY09_06825 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY09_06830 PF00455 DeoR C terminal sensor domain HPY09_06830 PF08220 DeoR-like helix-turn-helix domain HPY09_06835 PF00005 ABC transporter HPY09_06835 PF17912 MalK OB fold domain HPY09_06840 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_06845 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_06850 PF13416 Bacterial extracellular solute-binding protein HPY09_06860 PF01618 MotA/TolQ/ExbB proton channel family HPY09_06865 PF01618 MotA/TolQ/ExbB proton channel family HPY09_06870 PF02472 Biopolymer transport protein ExbD/TolR HPY09_06875 PF03544 Gram-negative bacterial TonB protein C-terminal HPY09_06885 PF14743 DNA ligase OB-like domain HPY09_06885 PF01068 ATP dependent DNA ligase domain HPY09_06895 PF01554 MatE HPY09_06905 PF03881 Fructosamine kinase HPY09_06915 PF00877 NlpC/P60 family HPY09_06920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_06920 PF00672 HAMP domain HPY09_06920 PF12729 Four helix bundle sensory module for signal transduction HPY09_06935 PF00480 ROK family HPY09_06950 PF00994 Probable molybdopterin binding domain HPY09_06950 PF03453 MoeA N-terminal region (domain I and II) HPY09_06950 PF03454 MoeA C-terminal region (domain IV) HPY09_06955 PF12804 MobA-like NTP transferase domain HPY09_06960 PF08402 TOBE domain HPY09_06960 PF00005 ABC transporter HPY09_06965 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_06970 PF12849 PBP superfamily domain HPY09_06975 PF00158 Sigma-54 interaction domain HPY09_06975 PF00072 Response regulator receiver domain HPY09_06975 PF02954 Bacterial regulatory protein, Fis family HPY09_06980 PF00512 His Kinase A (phospho-acceptor) domain HPY09_06980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_06980 PF00989 PAS fold HPY09_06985 PF00005 ABC transporter HPY09_06985 PF12848 ABC transporter HPY09_06990 PF02634 FdhD/NarQ family HPY09_07010 PF02613 Nitrate reductase delta subunit HPY09_07020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY09_07020 PF00384 Molybdopterin oxidoreductase HPY09_07020 PF01568 Molydopterin dinucleotide binding domain HPY09_07025 PF13247 4Fe-4S dicluster domain HPY09_07040 PF02146 Sir2 family HPY09_07045 PF04461 Protein of unknown function (DUF520) HPY09_07050 PF00793 DAHP synthetase I family HPY09_07065 PF13509 S1 domain HPY09_07065 PF17783 CvfB-like winged helix domain HPY09_07070 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HPY09_07070 PF01189 16S rRNA methyltransferase RsmB/F HPY09_07070 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HPY09_07075 PF02470 MlaD protein HPY09_07080 PF04403 Paraquat-inducible protein A HPY09_07085 PF00005 ABC transporter HPY09_07085 PF00664 ABC transporter transmembrane region HPY09_07090 PF13185 GAF domain HPY09_07095 PF17516 ProQ C-terminal domain HPY09_07095 PF04352 ProQ/FINO family HPY09_07100 PF11818 C-terminal domain of tail specific protease (DUF3340) HPY09_07100 PF00595 PDZ domain HPY09_07100 PF03572 Peptidase family S41 HPY09_07100 PF17804 Tail specific protease N-terminal domain HPY09_07110 PF01433 Peptidase family M1 domain HPY09_07110 PF11940 Domain of unknown function (DUF3458) Ig-like fold HPY09_07110 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HPY09_07120 PF05088 Bacterial NAD-glutamate dehydrogenase HPY09_07125 PF01180 Dihydroorotate dehydrogenase HPY09_07130 PF07126 Cell-division protein ZapC HPY09_07135 PF10672 S-adenosylmethionine-dependent methyltransferase HPY09_07135 PF01170 Putative RNA methylase family UPF0020 HPY09_07135 PF02926 THUMP domain HPY09_07155 PF04957 Ribosome modulation factor HPY09_07160 PF07977 FabA-like domain HPY09_07165 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY09_07165 PF13654 AAA domain HPY09_07170 PF06303 MatP N-terminal domain HPY09_07170 PF17414 MatP C-terminal ribbon-helix-helix domain HPY09_07270 PF12146 Serine aminopeptidase, S33 HPY09_07270 PF07634 RtxA repeat HPY09_07270 PF16671 Actin cross-linking domain HPY09_07270 PF11713 Peptidase C80 family HPY09_07270 PF11647 Membrane Localization Domain HPY09_07275 PF02794 RTX toxin acyltransferase family HPY09_07285 PF00664 ABC transporter transmembrane region HPY09_07285 PF00005 ABC transporter HPY09_07285 PF03412 Peptidase C39 family HPY09_07295 PF00664 ABC transporter transmembrane region HPY09_07295 PF03412 Peptidase C39 family HPY09_07295 PF00005 ABC transporter HPY09_07300 PF00512 His Kinase A (phospho-acceptor) domain HPY09_07300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_07300 PF00072 Response regulator receiver domain HPY09_07300 PF09308 LuxQ, periplasmic HPY09_07315 PF00115 Cytochrome C and Quinol oxidase polypeptide I HPY09_07330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY09_07330 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HPY09_07340 PF00403 Heavy-metal-associated domain HPY09_07355 PF13545 Crp-like helix-turn-helix domain HPY09_07355 PF00027 Cyclic nucleotide-binding domain HPY09_07360 PF00582 Universal stress protein family HPY09_07365 PF01171 PP-loop family HPY09_07385 PF08402 TOBE domain HPY09_07385 PF00005 ABC transporter HPY09_07390 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_07395 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_07400 PF13416 Bacterial extracellular solute-binding protein HPY09_07405 PF13416 Bacterial extracellular solute-binding protein HPY09_07420 PF01235 Sodium:alanine symporter family HPY09_07425 PF01810 LysE type translocator HPY09_07455 PF04717 Type VI secretion system, phage-baseplate injector HPY09_07455 PF16671 Actin cross-linking domain HPY09_07460 PF05638 Type VI secretion system effector, Hcp HPY09_07465 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HPY09_07485 PF00270 DEAD/DEAH box helicase HPY09_07485 PF00271 Helicase conserved C-terminal domain HPY09_07490 PF00893 Small Multidrug Resistance protein HPY09_07495 PF03441 FAD binding domain of DNA photolyase HPY09_07495 PF00875 DNA photolyase HPY09_07500 PF07690 Major Facilitator Superfamily HPY09_07505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_07505 PF03466 LysR substrate binding domain HPY09_07515 PF01979 Amidohydrolase family HPY09_07520 PF10437 Bacterial lipoate protein ligase C-terminus HPY09_07520 PF03099 Biotin/lipoate A/B protein ligase family HPY09_07525 PF00012 Hsp70 protein HPY09_07535 PF00270 DEAD/DEAH box helicase HPY09_07535 PF00271 Helicase conserved C-terminal domain HPY09_07535 PF04408 Helicase associated domain (HA2) HPY09_07535 PF11898 Domain of unknown function (DUF3418) HPY09_07535 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HPY09_07565 PF00012 Hsp70 protein HPY09_07570 PF00012 Hsp70 protein HPY09_07575 PF17158 Membrane-associated sensor, integral membrane domain HPY09_07575 PF00990 Diguanylate cyclase, GGDEF domain HPY09_07585 PF03707 Bacterial signalling protein N terminal repeat HPY09_07585 PF00990 Diguanylate cyclase, GGDEF domain HPY09_07585 PF00563 EAL domain HPY09_07605 PF06508 Queuosine biosynthesis protein QueC HPY09_07610 PF04055 Radical SAM superfamily HPY09_07620 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY09_07620 PF14824 Sirohaem biosynthesis protein central HPY09_07620 PF10414 Sirohaem synthase dimerisation region HPY09_07625 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY09_07630 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_07635 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_07640 PF00005 ABC transporter HPY09_07645 PF01027 Inhibitor of apoptosis-promoting Bax1 HPY09_07650 PF04358 DsrC like protein HPY09_07655 PF00708 Acylphosphatase HPY09_07660 PF10672 S-adenosylmethionine-dependent methyltransferase HPY09_07660 PF17785 PUA-like domain HPY09_07665 PF00990 Diguanylate cyclase, GGDEF domain HPY09_07670 PF00462 Glutaredoxin HPY09_07670 PF08534 Redoxin HPY09_07675 PF01627 Hpt domain HPY09_07675 PF00672 HAMP domain HPY09_07675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_07675 PF00512 His Kinase A (phospho-acceptor) domain HPY09_07675 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HPY09_07675 PF00072 Response regulator receiver domain HPY09_07680 PF00072 Response regulator receiver domain HPY09_07685 PF14497 Glutathione S-transferase, C-terminal domain HPY09_07685 PF02798 Glutathione S-transferase, N-terminal domain HPY09_07695 PF04209 homogentisate 1,2-dioxygenase HPY09_07700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY09_07705 PF07687 Peptidase dimerisation domain HPY09_07705 PF01546 Peptidase family M20/M25/M40 HPY09_07720 PF13006 Insertion element 4 transposase N-terminal HPY09_07720 PF01609 Transposase DDE domain HPY09_07725 PF13193 AMP-binding enzyme C-terminal domain HPY09_07725 PF00501 AMP-binding enzyme HPY09_07725 PF16177 Acetyl-coenzyme A synthetase N-terminus HPY09_07730 PF04303 PrpF protein HPY09_07735 PF00330 Aconitase family (aconitate hydratase) HPY09_07735 PF00694 Aconitase C-terminal domain HPY09_07740 PF00285 Citrate synthase, C-terminal domain HPY09_07750 PF00392 Bacterial regulatory proteins, gntR family HPY09_07750 PF07729 FCD domain HPY09_07765 PF01970 Tripartite tricarboxylate transporter TctA family HPY09_07770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_07770 PF03466 LysR substrate binding domain HPY09_07775 PF07715 TonB-dependent Receptor Plug Domain HPY09_07775 PF00593 TonB dependent receptor HPY09_07815 PF02653 Branched-chain amino acid transport system / permease component HPY09_07820 PF00005 ABC transporter HPY09_07825 PF13407 Periplasmic binding protein domain HPY09_07845 PF00072 Response regulator receiver domain HPY09_07845 PF00486 Transcriptional regulatory protein, C terminal HPY09_07850 PF00672 HAMP domain HPY09_07850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_07850 PF00512 His Kinase A (phospho-acceptor) domain HPY09_07855 PF06629 MltA-interacting protein MipA HPY09_07860 PF04393 Protein of unknown function (DUF535) HPY09_07865 PF00158 Sigma-54 interaction domain HPY09_07865 PF02954 Bacterial regulatory protein, Fis family HPY09_07865 PF00072 Response regulator receiver domain HPY09_07870 PF00512 His Kinase A (phospho-acceptor) domain HPY09_07870 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY09_07870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_07875 PF00939 Sodium:sulfate symporter transmembrane region HPY09_07880 PF00672 HAMP domain HPY09_07880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_07885 PF00842 Alanine racemase, C-terminal domain HPY09_07885 PF01168 Alanine racemase, N-terminal domain HPY09_07890 PF00892 EamA-like transporter family HPY09_07900 PF13302 Acetyltransferase (GNAT) domain HPY09_07905 PF18024 Helix-turn-helix domain HPY09_07905 PF00158 Sigma-54 interaction domain HPY09_07910 PF05128 Domain of unknown function (DUF697) HPY09_07915 PF04317 YcjX-like family, DUF463 HPY09_07930 PF00425 chorismate binding enzyme HPY09_07930 PF04715 Anthranilate synthase component I, N terminal region HPY09_07935 PF00293 NUDIX domain HPY09_07940 PF03222 Tryptophan/tyrosine permease family HPY09_07945 PF03315 Serine dehydratase beta chain HPY09_07945 PF03313 Serine dehydratase alpha chain HPY09_07950 PF01609 Transposase DDE domain HPY09_07950 PF13006 Insertion element 4 transposase N-terminal HPY09_07955 PF01242 6-pyruvoyl tetrahydropterin synthase HPY09_07965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_07965 PF12729 Four helix bundle sensory module for signal transduction HPY09_07965 PF00672 HAMP domain HPY09_07970 PF01336 OB-fold nucleic acid binding domain HPY09_07970 PF00152 tRNA synthetases class II (D, K and N) HPY09_07975 PF08543 Phosphomethylpyrimidine kinase HPY09_07980 PF01966 HD domain HPY09_07980 PF00672 HAMP domain HPY09_07985 PF00155 Aminotransferase class I and II HPY09_08000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_08000 PF17200 Single Cache domain 2 HPY09_08000 PF00672 HAMP domain HPY09_08005 PF04349 Periplasmic glucan biosynthesis protein, MdoG HPY09_08010 PF13506 Glycosyl transferase family 21 HPY09_08015 PF02028 BCCT, betaine/carnitine/choline family transporter HPY09_08020 PF01047 MarR family HPY09_08025 PF00196 Bacterial regulatory proteins, luxR family HPY09_08025 PF00072 Response regulator receiver domain HPY09_08030 PF17200 Single Cache domain 2 HPY09_08030 PF07730 Histidine kinase HPY09_08035 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HPY09_08045 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY09_08060 PF00753 Metallo-beta-lactamase superfamily HPY09_08065 PF05951 Bacterial protein of unknown function (DUF882) HPY09_08100 PF00925 GTP cyclohydrolase II HPY09_08110 PF07690 Major Facilitator Superfamily HPY09_08125 PF00521 DNA gyrase/topoisomerase IV, subunit A HPY09_08125 PF03989 DNA gyrase C-terminal domain, beta-propeller HPY09_08135 PF03477 ATP cone domain HPY09_08135 PF02867 Ribonucleotide reductase, barrel domain HPY09_08135 PF00317 Ribonucleotide reductase, all-alpha domain HPY09_08140 PF00268 Ribonucleotide reductase, small chain HPY09_08145 PF00175 Oxidoreductase NAD-binding domain HPY09_08145 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY09_08145 PF00970 Oxidoreductase FAD-binding domain HPY09_08155 PF00994 Probable molybdopterin binding domain HPY09_08170 PF17200 Single Cache domain 2 HPY09_08170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_08170 PF00672 HAMP domain HPY09_08185 PF00005 ABC transporter HPY09_08190 PF01032 FecCD transport family HPY09_08195 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HPY09_08205 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HPY09_08210 PF02654 Cobalamin-5-phosphate synthase HPY09_08215 PF02277 Phosphoribosyltransferase HPY09_08220 PF01641 SelR domain HPY09_08230 PF00929 Exonuclease HPY09_08230 PF08411 Exonuclease C-terminal HPY09_08235 PF03788 LrgA family HPY09_08240 PF04172 LrgB-like family HPY09_08245 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY09_08245 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HPY09_08255 PF02222 ATP-grasp domain HPY09_08260 PF01797 Transposase IS200 like HPY09_08265 PF05724 Thiopurine S-methyltransferase (TPMT) HPY09_08275 PF00216 Bacterial DNA-binding protein HPY09_08280 PF01588 Putative tRNA binding domain HPY09_08280 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HPY09_08280 PF03484 tRNA synthetase B5 domain HPY09_08280 PF03147 Ferredoxin-fold anticodon binding domain HPY09_08280 PF03483 B3/4 domain HPY09_08285 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HPY09_08285 PF01409 tRNA synthetases class II core domain (F) HPY09_08295 PF00990 Diguanylate cyclase, GGDEF domain HPY09_08295 PF00072 Response regulator receiver domain HPY09_08320 PF01066 CDP-alcohol phosphatidyltransferase HPY09_08325 PF01541 GIY-YIG catalytic domain HPY09_08325 PF08459 UvrC Helix-hairpin-helix N-terminal HPY09_08325 PF02151 UvrB/uvrC motif HPY09_08330 PF00072 Response regulator receiver domain HPY09_08330 PF00196 Bacterial regulatory proteins, luxR family HPY09_08335 PF03104 DNA polymerase family B, exonuclease domain HPY09_08335 PF00136 DNA polymerase family B HPY09_08340 PF00563 EAL domain HPY09_08340 PF13426 PAS domain HPY09_08340 PF00990 Diguanylate cyclase, GGDEF domain HPY09_08350 PF08207 Elongation factor P (EF-P) KOW-like domain HPY09_08350 PF09285 Elongation factor P, C-terminal HPY09_08350 PF01132 Elongation factor P (EF-P) OB domain HPY09_08355 PF04269 Protein of unknown function, DUF440 HPY09_08365 PF00392 Bacterial regulatory proteins, gntR family HPY09_08365 PF07702 UTRA domain HPY09_08370 PF01979 Amidohydrolase family HPY09_08375 PF00491 Arginase family HPY09_08380 PF17391 Urocanase N-terminal domain HPY09_08380 PF01175 Urocanase Rossmann-like domain HPY09_08380 PF17392 Urocanase C-terminal domain HPY09_08385 PF00221 Aromatic amino acid lyase HPY09_08400 PF04191 Phospholipid methyltransferase HPY09_08405 PF13183 4Fe-4S dicluster domain HPY09_08405 PF02913 FAD linked oxidases, C-terminal domain HPY09_08405 PF01565 FAD binding domain HPY09_08420 PF13488 Glycine zipper HPY09_08420 PF00691 OmpA family HPY09_08440 PF01259 SAICAR synthetase HPY09_08450 PF00390 Malic enzyme, N-terminal domain HPY09_08450 PF03949 Malic enzyme, NAD binding domain HPY09_08460 PF02698 DUF218 domain HPY09_08465 PF00990 Diguanylate cyclase, GGDEF domain HPY09_08465 PF08448 PAS fold HPY09_08470 PF00266 Aminotransferase class-V HPY09_08480 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY09_08485 PF00664 ABC transporter transmembrane region HPY09_08485 PF00005 ABC transporter HPY09_08490 PF00664 ABC transporter transmembrane region HPY09_08490 PF00005 ABC transporter HPY09_08495 PF01479 S4 domain HPY09_08495 PF00849 RNA pseudouridylate synthase HPY09_08500 PF01300 Telomere recombination HPY09_08505 PF02811 PHP domain HPY09_08510 PF08056 Tryptophan operon leader peptide HPY09_08515 PF04715 Anthranilate synthase component I, N terminal region HPY09_08515 PF00425 chorismate binding enzyme HPY09_08520 PF00117 Glutamine amidotransferase class-I HPY09_08525 PF02885 Glycosyl transferase family, helical bundle domain HPY09_08525 PF00591 Glycosyl transferase family, a/b domain HPY09_08530 PF00218 Indole-3-glycerol phosphate synthase HPY09_08530 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HPY09_08535 PF00291 Pyridoxal-phosphate dependent enzyme HPY09_08540 PF00290 Tryptophan synthase alpha chain HPY09_08545 PF00375 Sodium:dicarboxylate symporter family HPY09_08550 PF00265 Thymidine kinase HPY09_08555 PF01336 OB-fold nucleic acid binding domain HPY09_08555 PF00152 tRNA synthetases class II (D, K and N) HPY09_08555 PF02938 GAD domain HPY09_08560 PF01904 Protein of unknown function DUF72 HPY09_08565 PF13649 Methyltransferase domain HPY09_08570 PF08003 Protein of unknown function (DUF1698) HPY09_08575 PF08443 RimK-like ATP-grasp domain HPY09_08575 PF18030 RimK PreATP-grasp domain HPY09_08590 PF00266 Aminotransferase class-V HPY09_08600 PF00512 His Kinase A (phospho-acceptor) domain HPY09_08600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_08600 PF00989 PAS fold HPY09_08615 PF04993 TfoX N-terminal domain HPY09_08615 PF04994 TfoX C-terminal domain HPY09_08625 PF03956 Lysine exporter LysO HPY09_08635 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY09_08640 PF01380 SIS domain HPY09_08640 PF01418 Helix-turn-helix domain, rpiR family HPY09_08645 PF00465 Iron-containing alcohol dehydrogenase HPY09_08645 PF00171 Aldehyde dehydrogenase family HPY09_08650 PF00462 Glutaredoxin HPY09_08655 PF02080 TrkA-C domain HPY09_08655 PF06826 Predicted Permease Membrane Region HPY09_08660 PF00004 ATPase family associated with various cellular activities (AAA) HPY09_08660 PF07724 AAA domain (Cdc48 subfamily) HPY09_08660 PF17871 AAA lid domain HPY09_08660 PF02861 Clp amino terminal domain, pathogenicity island component HPY09_08660 PF10431 C-terminal, D2-small domain, of ClpB protein HPY09_08665 PF02617 ATP-dependent Clp protease adaptor protein ClpS HPY09_08670 PF00313 'Cold-shock' DNA-binding domain HPY09_08675 PF03971 Monomeric isocitrate dehydrogenase HPY09_08680 PF00849 RNA pseudouridylate synthase HPY09_08685 PF01502 Phosphoribosyl-AMP cyclohydrolase HPY09_08685 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HPY09_08690 PF00977 Histidine biosynthesis protein HPY09_08695 PF00977 Histidine biosynthesis protein HPY09_08700 PF00117 Glutamine amidotransferase class-I HPY09_08705 PF00475 Imidazoleglycerol-phosphate dehydratase HPY09_08705 PF08645 Polynucleotide kinase 3 phosphatase HPY09_08710 PF00155 Aminotransferase class I and II HPY09_08715 PF00815 Histidinol dehydrogenase HPY09_08720 PF01634 ATP phosphoribosyltransferase HPY09_08720 PF08029 HisG, C-terminal domain HPY09_08725 PF03553 Na+/H+ antiporter family HPY09_08730 PF00816 H-NS histone family HPY09_08735 PF00294 pfkB family carbohydrate kinase HPY09_08745 PF04356 Protein of unknown function (DUF489) HPY09_08750 PF00206 Lyase HPY09_08750 PF08328 Adenylosuccinate lyase C-terminal HPY09_08760 PF16036 Chalcone isomerase-like HPY09_08795 PF01435 Peptidase family M48 HPY09_08810 PF08241 Methyltransferase domain HPY09_08815 PF00155 Aminotransferase class I and II HPY09_08820 PF06968 Biotin and Thiamin Synthesis associated domain HPY09_08820 PF04055 Radical SAM superfamily HPY09_08825 PF00202 Aminotransferase class-III HPY09_08830 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY09_08830 PF02403 Seryl-tRNA synthetase N-terminal domain HPY09_08835 PF12002 MgsA AAA+ ATPase C terminal HPY09_08835 PF16193 AAA C-terminal domain HPY09_08835 PF00004 ATPase family associated with various cellular activities (AAA) HPY09_08840 PF03548 Outer membrane lipoprotein carrier protein LolA HPY09_08845 PF02810 SEC-C motif HPY09_08845 PF07517 SecA DEAD-like domain HPY09_08845 PF01043 SecA preprotein cross-linking domain HPY09_08845 PF07516 SecA Wing and Scaffold domain HPY09_08850 PF01207 Dihydrouridine synthase (Dus) HPY09_08855 PF00990 Diguanylate cyclase, GGDEF domain HPY09_08855 PF05230 MASE2 domain HPY09_08860 PF00005 ABC transporter HPY09_08865 PF02653 Branched-chain amino acid transport system / permease component HPY09_08875 PF09905 DNA-binding protein VF530 HPY09_08880 PF04217 Protein of unknown function, DUF412 HPY09_08885 PF00871 Acetokinase family HPY09_08890 PF07085 DRTGG domain HPY09_08890 PF01515 Phosphate acetyl/butaryl transferase HPY09_08895 PF13409 Glutathione S-transferase, N-terminal domain HPY09_08900 PF00005 ABC transporter HPY09_08900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY09_08905 PF00005 ABC transporter HPY09_08905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY09_08910 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY09_08910 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_08915 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_08920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY09_08930 PF08448 PAS fold HPY09_08930 PF13188 PAS domain HPY09_08930 PF00072 Response regulator receiver domain HPY09_08930 PF00512 His Kinase A (phospho-acceptor) domain HPY09_08930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_08935 PF00072 Response regulator receiver domain HPY09_08935 PF02954 Bacterial regulatory protein, Fis family HPY09_08935 PF00158 Sigma-54 interaction domain HPY09_08940 PF13188 PAS domain HPY09_08940 PF03707 Bacterial signalling protein N terminal repeat HPY09_08940 PF00990 Diguanylate cyclase, GGDEF domain HPY09_08940 PF00563 EAL domain HPY09_08945 PF00512 His Kinase A (phospho-acceptor) domain HPY09_08945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_08950 PF13188 PAS domain HPY09_08950 PF00989 PAS fold HPY09_08950 PF00512 His Kinase A (phospho-acceptor) domain HPY09_08950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_08950 PF13426 PAS domain HPY09_08960 PF00072 Response regulator receiver domain HPY09_08975 PF01300 Telomere recombination HPY09_08975 PF03481 Putative GTP-binding controlling metal-binding HPY09_08990 PF01797 Transposase IS200 like HPY09_09000 PF01161 Phosphatidylethanolamine-binding protein HPY09_09010 PF00704 Glycosyl hydrolases family 18 HPY09_09010 PF06483 Chitinase C HPY09_09025 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY09_09025 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY09_09030 PF01022 Bacterial regulatory protein, arsR family HPY09_09040 PF00990 Diguanylate cyclase, GGDEF domain HPY09_09040 PF08448 PAS fold HPY09_09050 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY09_09065 PF13404 AsnC-type helix-turn-helix domain HPY09_09065 PF01037 Lrp/AsnC ligand binding domain HPY09_09070 PF00291 Pyridoxal-phosphate dependent enzyme HPY09_09075 PF08496 Peptidase family S49 N-terminal HPY09_09075 PF01343 Peptidase family S49 HPY09_09080 PF00106 short chain dehydrogenase HPY09_09090 PF03692 Putative zinc- or iron-chelating domain HPY09_09095 PF03692 Putative zinc- or iron-chelating domain HPY09_09105 PF02575 YbaB/EbfC DNA-binding family HPY09_09110 PF12169 DNA polymerase III subunits gamma and tau domain III HPY09_09110 PF12170 DNA polymerase III tau subunit V interacting with alpha HPY09_09110 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HPY09_09115 PF00156 Phosphoribosyl transferase domain HPY09_09120 PF04304 Protein of unknown function (DUF454) HPY09_09125 PF00072 Response regulator receiver domain HPY09_09130 PF03466 LysR substrate binding domain HPY09_09130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_09135 PF00881 Nitroreductase family HPY09_09140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY09_09140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY09_09140 PF00378 Enoyl-CoA hydratase/isomerase HPY09_09145 PF02803 Thiolase, C-terminal domain HPY09_09145 PF00108 Thiolase, N-terminal domain HPY09_09150 PF04542 Sigma-70 region 2 HPY09_09150 PF08281 Sigma-70, region 4 HPY09_09160 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY09_09165 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY09_09170 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY09_09175 PF12557 Cob(I)alamin adenosyltransferase N terminal HPY09_09175 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HPY09_09180 PF05170 AsmA family HPY09_09185 PF00485 Phosphoribulokinase / Uridine kinase family HPY09_09190 PF10609 NUBPL iron-transfer P-loop NTPase HPY09_09195 PF01588 Putative tRNA binding domain HPY09_09195 PF09334 tRNA synthetases class I (M) HPY09_09205 PF01048 Phosphorylase superfamily HPY09_09210 PF00403 Heavy-metal-associated domain HPY09_09215 PF01743 Poly A polymerase head domain HPY09_09215 PF00571 CBS domain HPY09_09220 PF00990 Diguanylate cyclase, GGDEF domain HPY09_09220 PF07694 5TMR of 5TMR-LYT HPY09_09225 PF02391 MoaE protein HPY09_09230 PF02597 ThiS family HPY09_09235 PF01967 MoaC family HPY09_09240 PF00994 Probable molybdopterin binding domain HPY09_09245 PF06463 Molybdenum Cofactor Synthesis C HPY09_09245 PF04055 Radical SAM superfamily HPY09_09250 PF01933 Uncharacterised protein family UPF0052 HPY09_09255 PF01627 Hpt domain HPY09_09260 PF00158 Sigma-54 interaction domain HPY09_09260 PF00072 Response regulator receiver domain HPY09_09260 PF02954 Bacterial regulatory protein, Fis family HPY09_09265 PF12344 Ultra-violet resistance protein B HPY09_09265 PF17757 UvrB interaction domain HPY09_09265 PF04851 Type III restriction enzyme, res subunit HPY09_09265 PF02151 UvrB/uvrC motif HPY09_09265 PF00271 Helicase conserved C-terminal domain HPY09_09275 PF02508 Rnf-Nqr subunit, membrane protein HPY09_09280 PF04060 Putative Fe-S cluster HPY09_09285 PF10531 SLBB domain HPY09_09285 PF12838 4Fe-4S dicluster domain HPY09_09285 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HPY09_09285 PF13375 RnfC Barrel sandwich hybrid domain HPY09_09290 PF03116 NQR2, RnfD, RnfE family HPY09_09295 PF04205 FMN-binding domain HPY09_09300 PF02508 Rnf-Nqr subunit, membrane protein HPY09_09305 PF00633 Helix-hairpin-helix motif HPY09_09305 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY09_09305 PF10576 Iron-sulfur binding domain of endonuclease III HPY09_09310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY09_09315 PF10952 Protein of unknown function (DUF2753) HPY09_09320 PF18393 MotY N-terminal domain HPY09_09320 PF00691 OmpA family HPY09_09325 PF00929 Exonuclease HPY09_09330 PF03553 Na+/H+ antiporter family HPY09_09330 PF13726 Na+-H+ antiporter family HPY09_09335 PF00156 Phosphoribosyl transferase domain HPY09_09340 PF02674 Colicin V production protein HPY09_09345 PF05036 Sporulation related domain HPY09_09350 PF02875 Mur ligase family, glutamate ligase domain HPY09_09350 PF08245 Mur ligase middle domain HPY09_09355 PF17848 Acetyl-coA carboxylase zinc finger domain HPY09_09355 PF01039 Carboxyl transferase domain HPY09_09360 PF01416 tRNA pseudouridine synthase HPY09_09370 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HPY09_09370 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY09_09375 PF02378 Phosphotransferase system, EIIC HPY09_09375 PF00367 phosphotransferase system, EIIB HPY09_09375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY09_09380 PF01979 Amidohydrolase family HPY09_09385 PF01047 MarR family HPY09_09385 PF00480 ROK family HPY09_09390 PF00999 Sodium/hydrogen exchanger family HPY09_09390 PF02254 TrkA-N domain HPY09_09400 PF02357 Transcription termination factor nusG HPY09_09405 PF00854 POT family HPY09_09410 PF00762 Ferrochelatase HPY09_09415 PF05191 Adenylate kinase, active site lid HPY09_09420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_09420 PF00183 Hsp90 protein HPY09_09425 PF00486 Transcriptional regulatory protein, C terminal HPY09_09430 PF17323 Trans-membrane regulatory protein ToxS HPY09_09440 PF12850 Calcineurin-like phosphoesterase superfamily domain HPY09_09445 PF01370 NAD dependent epimerase/dehydratase family HPY09_09445 PF08338 Domain of unknown function (DUF1731) HPY09_09450 PF00106 short chain dehydrogenase HPY09_09455 PF00085 Thioredoxin HPY09_09460 PF16200 C-terminal region of band_7 HPY09_09460 PF01145 SPFH domain / Band 7 family HPY09_09465 PF01957 NfeD-like C-terminal, partner-binding HPY09_09470 PF13411 MerR HTH family regulatory protein HPY09_09480 PF13609 Gram-negative porin HPY09_09485 PF03120 NAD-dependent DNA ligase OB-fold domain HPY09_09485 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HPY09_09485 PF12826 Helix-hairpin-helix motif HPY09_09485 PF00533 BRCA1 C Terminus (BRCT) domain HPY09_09485 PF01653 NAD-dependent DNA ligase adenylation domain HPY09_09490 PF04354 ZipA, C-terminal FtsZ-binding domain HPY09_09500 PF00291 Pyridoxal-phosphate dependent enzyme HPY09_09505 PF00381 PTS HPr component phosphorylation site HPY09_09510 PF02896 PEP-utilising enzyme, TIM barrel domain HPY09_09510 PF00391 PEP-utilising enzyme, mobile domain HPY09_09510 PF05524 PEP-utilising enzyme, N-terminal HPY09_09515 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HPY09_09520 PF01494 FAD binding domain HPY09_09525 PF01938 TRAM domain HPY09_09525 PF00919 Uncharacterized protein family UPF0004 HPY09_09525 PF04055 Radical SAM superfamily HPY09_09530 PF02562 PhoH-like protein HPY09_09535 PF02130 Uncharacterized protein family UPF0054 HPY09_09540 PF03471 Transporter associated domain HPY09_09540 PF00571 CBS domain HPY09_09545 PF00795 Carbon-nitrogen hydrolase HPY09_09550 PF07295 Zinc-ribbon containing domain HPY09_09555 PF08264 Anticodon-binding domain of tRNA HPY09_09555 PF13603 Leucyl-tRNA synthetase, Domain 2 HPY09_09555 PF00133 tRNA synthetases class I (I, L, M and V) HPY09_09560 PF04390 Lipopolysaccharide-assembly HPY09_09565 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HPY09_09565 PF06144 DNA polymerase III, delta subunit HPY09_09575 PF02590 Predicted SPOUT methyltransferase HPY09_09580 PF03717 Penicillin-binding Protein dimerisation domain HPY09_09580 PF00905 Penicillin binding protein transpeptidase domain HPY09_09585 PF01098 Cell cycle protein HPY09_09590 PF05036 Sporulation related domain HPY09_09590 PF03330 Lytic transglycolase HPY09_09595 PF07943 Penicillin-binding protein 5, C-terminal domain HPY09_09595 PF00768 D-alanyl-D-alanine carboxypeptidase HPY09_09600 PF04359 Protein of unknown function (DUF493) HPY09_09605 PF03099 Biotin/lipoate A/B protein ligase family HPY09_09610 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HPY09_09610 PF04055 Radical SAM superfamily HPY09_09620 PF00464 Serine hydroxymethyltransferase HPY09_09640 PF02706 Chain length determinant protein HPY09_09640 PF13807 G-rich domain on putative tyrosine kinase HPY09_09640 PF13614 AAA domain HPY09_09645 PF10531 SLBB domain HPY09_09645 PF02563 Polysaccharide biosynthesis/export protein HPY09_09645 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HPY09_09655 PF02397 Bacterial sugar transferase HPY09_09670 PF17945 Beta/Gamma crystallin HPY09_09670 PF12561 ToxR activated gene A lipoprotein domain HPY09_09685 PF03808 Glycosyl transferase WecB/TagA/CpsF family HPY09_09695 PF00534 Glycosyl transferases group 1 HPY09_09695 PF00862 Sucrose synthase HPY09_09705 PF00132 Bacterial transferase hexapeptide (six repeats) HPY09_09725 PF12464 Maltose acetyltransferase HPY09_09725 PF14602 Hexapeptide repeat of succinyl-transferase HPY09_09730 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HPY09_09730 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY09_09730 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY09_09735 PF02350 UDP-N-acetylglucosamine 2-epimerase HPY09_09740 PF01451 Low molecular weight phosphotyrosine protein phosphatase HPY09_09745 PF00873 AcrB/AcrD/AcrF family HPY09_09750 PF13533 Biotin-lipoyl like HPY09_09775 PF00128 Alpha amylase, catalytic domain HPY09_09775 PF16657 Maltogenic Amylase, C-terminal domain HPY09_09780 PF00367 phosphotransferase system, EIIB HPY09_09780 PF02378 Phosphotransferase system, EIIC HPY09_09785 PF00356 Bacterial regulatory proteins, lacI family HPY09_09795 PF00005 ABC transporter HPY09_09795 PF09383 NIL domain HPY09_09800 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_09805 PF03180 NLPA lipoprotein HPY09_09810 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HPY09_09815 PF07348 Syd protein (SUKH-2) HPY09_09820 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HPY09_09820 PF14489 QueF-like protein HPY09_09830 PF00990 Diguanylate cyclase, GGDEF domain HPY09_09835 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HPY09_09835 PF11892 Domain of unknown function (DUF3412) HPY09_09835 PF03641 Possible lysine decarboxylase HPY09_09840 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HPY09_09840 PF01367 5'-3' exonuclease, C-terminal SAM fold HPY09_09845 PF04241 Protein of unknown function (DUF423) HPY09_09850 PF03466 LysR substrate binding domain HPY09_09850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_09855 PF02926 THUMP domain HPY09_09855 PF02568 Thiamine biosynthesis protein (ThiI) HPY09_09860 PF13677 Membrane MotB of proton-channel complex MotA/MotB HPY09_09860 PF00691 OmpA family HPY09_09865 PF01618 MotA/TolQ/ExbB proton channel family HPY09_09870 PF02609 Exonuclease VII small subunit HPY09_09875 PF00348 Polyprenyl synthetase HPY09_09880 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HPY09_09880 PF02780 Transketolase, C-terminal domain HPY09_09880 PF02779 Transketolase, pyrimidine binding domain HPY09_09885 PF00849 RNA pseudouridylate synthase HPY09_09890 PF04287 tRNA pseudouridine synthase C HPY09_09905 PF13302 Acetyltransferase (GNAT) domain HPY09_09915 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HPY09_09920 PF03806 AbgT putative transporter family HPY09_09925 PF00444 Ribosomal protein L36 HPY09_09930 PF01197 Ribosomal protein L31 HPY09_09935 PF01980 tRNA-methyltransferase O HPY09_09935 PF18389 TrmO C-terminal domain HPY09_09940 PF04073 Aminoacyl-tRNA editing domain HPY09_09940 PF03129 Anticodon binding domain HPY09_09940 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY09_09950 PF06786 Uncharacterised protein family (UPF0253) HPY09_09960 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HPY09_09960 PF02769 AIR synthase related protein, C-terminal domain HPY09_09960 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HPY09_09970 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY09_09970 PF01464 Transglycosylase SLT domain HPY09_09975 PF14437 MafB19-like deaminase HPY09_09980 PF03806 AbgT putative transporter family HPY09_10005 PF07963 Prokaryotic N-terminal methylation motif HPY09_10005 PF00114 Pilin (bacterial filament) HPY09_10010 PF01556 DnaJ C terminal domain HPY09_10010 PF00226 DnaJ domain HPY09_10010 PF00684 DnaJ central domain HPY09_10020 PF01025 GrpE HPY09_10025 PF01513 ATP-NAD kinase HPY09_10030 PF02463 RecF/RecN/SMC N terminal domain HPY09_10035 PF04355 SmpA / OmlA family HPY09_10040 PF03658 RnfH family Ubiquitin HPY09_10045 PF03364 Polyketide cyclase / dehydrase and lipid transport HPY09_10050 PF01668 SmpB protein HPY09_10080 PF00266 Aminotransferase class-V HPY09_10150 PF11953 Domain of unknown function (DUF3470) HPY09_10150 PF00037 4Fe-4S binding domain HPY09_10155 PF08032 RNA 2'-O ribose methyltransferase substrate binding HPY09_10155 PF00588 SpoU rRNA Methylase family HPY09_10165 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase HPY09_10170 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase HPY09_10175 PF04223 Citrate lyase, alpha subunit (CitF) HPY09_10180 PF03328 HpcH/HpaI aldolase/citrate lyase family HPY09_10185 PF06857 Malonate decarboxylase delta subunit (MdcD) HPY09_10190 PF08218 Citrate lyase ligase C-terminal domain HPY09_10195 PF03390 2-hydroxycarboxylate transporter family HPY09_10205 PF00682 HMGL-like HPY09_10205 PF02436 Conserved carboxylase domain HPY09_10205 PF00364 Biotin-requiring enzyme HPY09_10210 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HPY09_10215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_10215 PF17203 Single cache domain 3 HPY09_10220 PF12431 Transcriptional regulator HPY09_10220 PF00072 Response regulator receiver domain HPY09_10240 PF01266 FAD dependent oxidoreductase HPY09_10245 PF01235 Sodium:alanine symporter family HPY09_10250 PF14864 Alkyl sulfatase C-terminal HPY09_10250 PF14863 Alkyl sulfatase dimerisation HPY09_10250 PF00753 Metallo-beta-lactamase superfamily HPY09_10255 PF03466 LysR substrate binding domain HPY09_10255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_10260 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HPY09_10260 PF01648 4'-phosphopantetheinyl transferase superfamily HPY09_10265 PF00005 ABC transporter HPY09_10270 PF01032 FecCD transport family HPY09_10275 PF01032 FecCD transport family HPY09_10280 PF01497 Periplasmic binding protein HPY09_10295 PF00425 chorismate binding enzyme HPY09_10300 PF13193 AMP-binding enzyme C-terminal domain HPY09_10300 PF00501 AMP-binding enzyme HPY09_10305 PF00550 Phosphopantetheine attachment site HPY09_10305 PF00857 Isochorismatase family HPY09_10310 PF01184 GPR1/FUN34/yaaH family HPY09_10315 PF00704 Glycosyl hydrolases family 18 HPY09_10315 PF06483 Chitinase C HPY09_10320 PF01510 N-acetylmuramoyl-L-alanine amidase HPY09_10325 PF00732 GMC oxidoreductase HPY09_10325 PF05199 GMC oxidoreductase HPY09_10330 PF00958 GMP synthase C terminal domain HPY09_10330 PF00117 Glutamine amidotransferase class-I HPY09_10330 PF02540 NAD synthase HPY09_10335 PF00478 IMP dehydrogenase / GMP reductase domain HPY09_10335 PF00571 CBS domain HPY09_10340 PF13742 OB-fold nucleic acid binding domain HPY09_10340 PF02601 Exonuclease VII, large subunit HPY09_10355 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HPY09_10355 PF01926 50S ribosome-binding GTPase HPY09_10360 PF13360 PQQ-like domain HPY09_10365 PF09976 Tetratricopeptide repeat-like domain HPY09_10370 PF13393 Histidyl-tRNA synthetase HPY09_10370 PF03129 Anticodon binding domain HPY09_10375 PF04551 GcpE protein HPY09_10380 PF13464 Domain of unknown function (DUF4115) HPY09_10385 PF04055 Radical SAM superfamily HPY09_10390 PF00334 Nucleoside diphosphate kinase HPY09_10400 PF04384 Iron-sulphur cluster assembly HPY09_10405 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY09_10410 PF00012 Hsp70 protein HPY09_10415 PF00226 DnaJ domain HPY09_10415 PF07743 HSCB C-terminal oligomerisation domain HPY09_10420 PF01521 Iron-sulphur cluster biosynthesis HPY09_10425 PF01592 NifU-like N terminal domain HPY09_10430 PF00266 Aminotransferase class-V HPY09_10435 PF02082 Transcriptional regulator HPY09_10440 PF00588 SpoU rRNA Methylase family HPY09_10445 PF00459 Inositol monophosphatase family HPY09_10450 PF07549 SecD/SecF GG Motif HPY09_10450 PF02355 Protein export membrane protein HPY09_10455 PF07549 SecD/SecF GG Motif HPY09_10455 PF13721 SecD export protein N-terminal TM region HPY09_10455 PF02355 Protein export membrane protein HPY09_10460 PF02699 Preprotein translocase subunit HPY09_10465 PF01702 Queuine tRNA-ribosyltransferase HPY09_10470 PF02547 Queuosine biosynthesis protein HPY09_10475 PF00571 CBS domain HPY09_10480 PF00463 Isocitrate lyase family HPY09_10485 PF01274 Malate synthase HPY09_10490 PF03466 LysR substrate binding domain HPY09_10490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_10495 PF10417 C-terminal domain of 1-Cys peroxiredoxin HPY09_10495 PF00578 AhpC/TSA family HPY09_10500 PF03932 CutC family HPY09_10505 PF03976 Polyphosphate kinase 2 (PPK2) HPY09_10510 PF01895 PhoU domain HPY09_10515 PF00005 ABC transporter HPY09_10520 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_10525 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_10530 PF02503 Polyphosphate kinase middle domain HPY09_10530 PF13090 Polyphosphate kinase C-terminal domain 2 HPY09_10530 PF17941 Polyphosphate kinase C-terminal domain 1 HPY09_10530 PF13089 Polyphosphate kinase N-terminal domain HPY09_10535 PF02541 Ppx/GppA phosphatase family HPY09_10540 PF12849 PBP superfamily domain HPY09_10545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_10545 PF00512 His Kinase A (phospho-acceptor) domain HPY09_10545 PF11808 Phosphate regulon sensor protein PhoR HPY09_10545 PF00989 PAS fold HPY09_10550 PF00486 Transcriptional regulatory protein, C terminal HPY09_10550 PF00072 Response regulator receiver domain HPY09_10555 PF04381 Putative exonuclease, RdgC HPY09_10565 PF00037 4Fe-4S binding domain HPY09_10570 PF00881 Nitroreductase family HPY09_10610 PF10431 C-terminal, D2-small domain, of ClpB protein HPY09_10610 PF02861 Clp amino terminal domain, pathogenicity island component HPY09_10610 PF17871 AAA lid domain HPY09_10610 PF00004 ATPase family associated with various cellular activities (AAA) HPY09_10610 PF07724 AAA domain (Cdc48 subfamily) HPY09_10620 PF01479 S4 domain HPY09_10620 PF00849 RNA pseudouridylate synthase HPY09_10625 PF13525 Outer membrane lipoprotein HPY09_10630 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HPY09_10635 PF01817 Chorismate mutase type II HPY09_10635 PF00800 Prephenate dehydratase HPY09_10640 PF13416 Bacterial extracellular solute-binding protein HPY09_10645 PF00563 EAL domain HPY09_10645 PF00990 Diguanylate cyclase, GGDEF domain HPY09_10650 PF01931 Protein of unknown function DUF84 HPY09_10655 PF01371 Trp repressor protein HPY09_10660 PF14718 Soluble lytic murein transglycosylase L domain HPY09_10660 PF01464 Transglycosylase SLT domain HPY09_10665 PF00005 ABC transporter HPY09_10665 PF12848 ABC transporter HPY09_10670 PF07238 PilZ domain HPY09_10675 PF02153 Prephenate dehydrogenase HPY09_10675 PF01817 Chorismate mutase type II HPY09_10680 PF00793 DAHP synthetase I family HPY09_10685 PF07694 5TMR of 5TMR-LYT HPY09_10685 PF06580 Histidine kinase HPY09_10690 PF00072 Response regulator receiver domain HPY09_10690 PF04397 LytTr DNA-binding domain HPY09_10695 PF00933 Glycosyl hydrolase family 3 N terminal domain HPY09_10700 PF03702 Anhydro-N-acetylmuramic acid kinase HPY09_10705 PF13580 SIS domain HPY09_10720 PF02554 Carbon starvation protein CstA HPY09_10725 PF02401 LytB protein HPY09_10730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY09_10735 PF01252 Signal peptidase (SPase) II HPY09_10740 PF06827 Zinc finger found in FPG and IleRS HPY09_10740 PF08264 Anticodon-binding domain of tRNA HPY09_10740 PF00133 tRNA synthetases class I (I, L, M and V) HPY09_10745 PF06574 FAD synthetase HPY09_10745 PF01687 Riboflavin kinase HPY09_10750 PF03023 Lipid II flippase MurJ HPY09_10755 PF01649 Ribosomal protein S20 HPY09_10760 PF01022 Bacterial regulatory protein, arsR family HPY09_10765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_10765 PF03466 LysR substrate binding domain HPY09_10770 PF02690 Na+/Pi-cotransporter HPY09_10775 PF00303 Thymidylate synthase HPY09_10780 PF01790 Prolipoprotein diacylglyceryl transferase HPY09_10785 PF01925 Sulfite exporter TauE/SafE HPY09_10790 PF00391 PEP-utilising enzyme, mobile domain HPY09_10790 PF02896 PEP-utilising enzyme, TIM barrel domain HPY09_10790 PF01590 GAF domain HPY09_10790 PF05524 PEP-utilising enzyme, N-terminal HPY09_10795 PF00293 NUDIX domain HPY09_10800 PF02976 DNA mismatch repair enzyme MutH HPY09_10805 PF00248 Aldo/keto reductase family HPY09_10815 PF00158 Sigma-54 interaction domain HPY09_10815 PF00072 Response regulator receiver domain HPY09_10815 PF02954 Bacterial regulatory protein, Fis family HPY09_10820 PF00152 tRNA synthetases class II (D, K and N) HPY09_10820 PF01336 OB-fold nucleic acid binding domain HPY09_10830 PF05525 Branched-chain amino acid transport protein HPY09_10835 PF05175 Methyltransferase small domain HPY09_10840 PF00271 Helicase conserved C-terminal domain HPY09_10840 PF00270 DEAD/DEAH box helicase HPY09_10845 PF00009 Elongation factor Tu GTP binding domain HPY09_10845 PF16658 Class II release factor RF3, C-terminal domain HPY09_10845 PF03144 Elongation factor Tu domain 2 HPY09_10850 PF03707 Bacterial signalling protein N terminal repeat HPY09_10850 PF00990 Diguanylate cyclase, GGDEF domain HPY09_10850 PF00563 EAL domain HPY09_10865 PF13508 Acetyltransferase (GNAT) domain HPY09_10870 PF02036 SCP-2 sterol transfer family HPY09_10875 PF03707 Bacterial signalling protein N terminal repeat HPY09_10875 PF00990 Diguanylate cyclase, GGDEF domain HPY09_10875 PF00563 EAL domain HPY09_10880 PF01136 Peptidase family U32 HPY09_10885 PF01136 Peptidase family U32 HPY09_10900 PF07719 Tetratricopeptide repeat HPY09_10900 PF13181 Tetratricopeptide repeat HPY09_10905 PF00575 S1 RNA binding domain HPY09_10905 PF03725 3' exoribonuclease family, domain 2 HPY09_10905 PF00013 KH domain HPY09_10905 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HPY09_10905 PF01138 3' exoribonuclease family, domain 1 HPY09_10910 PF00312 Ribosomal protein S15 HPY09_10915 PF01509 TruB family pseudouridylate synthase (N terminal domain) HPY09_10915 PF09157 Pseudouridine synthase II TruB, C-terminal HPY09_10915 PF16198 tRNA pseudouridylate synthase B C-terminal domain HPY09_10920 PF02033 Ribosome-binding factor A HPY09_10925 PF08364 Bacterial translation initiation factor IF-2 associated region HPY09_10925 PF00009 Elongation factor Tu GTP binding domain HPY09_10925 PF04760 Translation initiation factor IF-2, N-terminal region HPY09_10925 PF11987 Translation-initiation factor 2 HPY09_10930 PF08529 NusA N-terminal domain HPY09_10930 PF13184 NusA-like KH domain HPY09_10930 PF00575 S1 RNA binding domain HPY09_10935 PF02576 RimP N-terminal domain HPY09_10935 PF17384 RimP C-terminal SH3 domain HPY09_10950 PF03840 Preprotein translocase SecG subunit HPY09_10955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY09_10955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY09_10955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY09_10955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY09_10960 PF00809 Pterin binding enzyme HPY09_10965 PF01434 Peptidase family M41 HPY09_10965 PF00004 ATPase family associated with various cellular activities (AAA) HPY09_10965 PF17862 AAA+ lid domain HPY09_10965 PF06480 FtsH Extracellular HPY09_10970 PF01728 FtsJ-like methyltransferase HPY09_10975 PF01985 CRS1 / YhbY (CRM) domain HPY09_10980 PF03449 Transcription elongation factor, N-terminal HPY09_10980 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY09_10985 PF13609 Gram-negative porin HPY09_10990 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HPY09_10995 PF01479 S4 domain HPY09_10995 PF00579 tRNA synthetases class I (W and Y) HPY09_11000 PF01551 Peptidase family M23 HPY09_11000 PF04225 Opacity-associated protein A LysM-like domain HPY09_11005 PF00873 AcrB/AcrD/AcrF family HPY09_11015 PF01521 Iron-sulphur cluster biosynthesis HPY09_11020 PF00202 Aminotransferase class-III HPY09_11025 PF01594 AI-2E family transporter HPY09_11030 PF05175 Methyltransferase small domain HPY09_11030 PF08468 Methyltransferase small domain N-terminal HPY09_11035 PF00072 Response regulator receiver domain HPY09_11035 PF09308 LuxQ, periplasmic HPY09_11035 PF00512 His Kinase A (phospho-acceptor) domain HPY09_11035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_11040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY09_11045 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_11050 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY09_11050 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_11055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY09_11055 PF00005 ABC transporter HPY09_11060 PF00005 ABC transporter HPY09_11060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY09_11070 PF01869 BadF/BadG/BcrA/BcrD ATPase family HPY09_11075 PF02838 Glycosyl hydrolase family 20, domain 2 HPY09_11075 PF00728 Glycosyl hydrolase family 20, catalytic domain HPY09_11080 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain HPY09_11080 PF06165 Glycosyltransferase family 36 HPY09_11085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY09_11085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY09_11085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY09_11085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY09_11090 PF08402 TOBE domain HPY09_11090 PF00005 ABC transporter HPY09_11100 PF13416 Bacterial extracellular solute-binding protein HPY09_11105 PF00909 Ammonium Transporter Family HPY09_11110 PF00543 Nitrogen regulatory protein P-II HPY09_11115 PF06062 Uncharacterised protein family (UPF0231) HPY09_11120 PF11791 Aconitate B N-terminal domain HPY09_11120 PF00330 Aconitase family (aconitate hydratase) HPY09_11120 PF06434 Aconitate hydratase 2 N-terminus HPY09_11125 PF01734 Patatin-like phospholipase HPY09_11130 PF00912 Transglycosylase HPY09_11130 PF14814 Bifunctional transglycosylase second domain HPY09_11130 PF00905 Penicillin binding protein transpeptidase domain HPY09_11135 PF08482 ATP-dependent helicase C-terminal HPY09_11135 PF00271 Helicase conserved C-terminal domain HPY09_11135 PF04408 Helicase associated domain (HA2) HPY09_11135 PF00270 DEAD/DEAH box helicase HPY09_11145 PF17746 SfsA N-terminal OB domain HPY09_11145 PF03749 Sugar fermentation stimulation protein RE domain HPY09_11150 PF01258 Prokaryotic dksA/traR C4-type zinc finger HPY09_11155 PF00749 tRNA synthetases class I (E and Q), catalytic domain HPY09_11160 PF12626 Polymerase A arginine-rich C-terminus HPY09_11160 PF12627 Probable RNA and SrmB- binding site of polymerase A HPY09_11160 PF01743 Poly A polymerase head domain HPY09_11165 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY09_11170 PF02548 Ketopantoate hydroxymethyltransferase HPY09_11175 PF02569 Pantoate-beta-alanine ligase HPY09_11180 PF01061 ABC-2 type transporter HPY09_11185 PF00005 ABC transporter HPY09_11190 PF01740 STAS domain HPY09_11190 PF00916 Sulfate permease family HPY09_11195 PF00484 Carbonic anhydrase HPY09_11200 PF00156 Phosphoribosyl transferase domain HPY09_11205 PF00440 Bacterial regulatory proteins, tetR family HPY09_11210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HPY09_11215 PF04348 LppC putative lipoprotein HPY09_11220 PF02021 Uncharacterised protein family UPF0102 HPY09_11225 PF13580 SIS domain HPY09_11230 PF04972 BON domain HPY09_11235 PF04386 Stringent starvation protein B HPY09_11240 PF00043 Glutathione S-transferase, C-terminal domain HPY09_11240 PF02798 Glutathione S-transferase, N-terminal domain HPY09_11245 PF02167 Cytochrome C1 family HPY09_11250 PF00032 Cytochrome b(C-terminal)/b6/petD HPY09_11250 PF00033 Cytochrome b/b6/petB HPY09_11255 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HPY09_11255 PF00355 Rieske [2Fe-2S] domain HPY09_11260 PF00380 Ribosomal protein S9/S16 HPY09_11265 PF00572 Ribosomal protein L13 HPY09_11270 PF03969 AFG1-like ATPase HPY09_11280 PF00595 PDZ domain HPY09_11285 PF13180 PDZ domain HPY09_11290 PF01245 Ribosomal protein L19 HPY09_11295 PF01746 tRNA (Guanine-1)-methyltransferase HPY09_11300 PF01782 RimM N-terminal domain HPY09_11300 PF05239 PRC-barrel domain HPY09_11305 PF00886 Ribosomal protein S16 HPY09_11310 PF02978 Signal peptide binding domain HPY09_11310 PF02881 SRP54-type protein, helical bundle domain HPY09_11310 PF00448 SRP54-type protein, GTPase domain HPY09_11315 PF01578 Cytochrome C assembly protein HPY09_11320 PF01595 Cyclin M transmembrane N-terminal domain HPY09_11320 PF03471 Transporter associated domain HPY09_11320 PF00571 CBS domain HPY09_11325 PF02664 S-Ribosylhomocysteinase (LuxS) HPY09_11330 PF04262 Glutamate-cysteine ligase HPY09_11335 PF00675 Insulinase (Peptidase family M16) HPY09_11335 PF05193 Peptidase M16 inactive domain HPY09_11340 PF09335 SNARE associated Golgi protein HPY09_11350 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HPY09_11355 PF00364 Biotin-requiring enzyme HPY09_11355 PF02436 Conserved carboxylase domain HPY09_11355 PF00682 HMGL-like HPY09_11360 PF04277 Oxaloacetate decarboxylase, gamma chain HPY09_11405 PF02599 Global regulator protein family HPY09_11415 PF02272 DHHA1 domain HPY09_11415 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY09_11415 PF01411 tRNA synthetases class II (A) HPY09_11420 PF02631 RecX family HPY09_11425 PF00154 recA bacterial DNA recombination protein HPY09_11430 PF02464 Competence-damaged protein HPY09_11435 PF12857 TOBE-like domain HPY09_11435 PF00005 ABC transporter HPY09_11440 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_11445 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_11455 PF00291 Pyridoxal-phosphate dependent enzyme HPY09_11460 PF00488 MutS domain V HPY09_11460 PF05192 MutS domain III HPY09_11460 PF05188 MutS domain II HPY09_11460 PF01624 MutS domain I HPY09_11460 PF05190 MutS family domain IV HPY09_11465 PF04542 Sigma-70 region 2 HPY09_11465 PF04545 Sigma-70, region 4 HPY09_11465 PF04539 Sigma-70 region 3 HPY09_11465 PF00140 Sigma-70 factor, region 1.2 HPY09_11470 PF01551 Peptidase family M23 HPY09_11470 PF01476 LysM domain HPY09_11480 PF01975 Survival protein SurE HPY09_11485 PF01142 tRNA pseudouridine synthase D (TruD) HPY09_11490 PF02542 YgbB family HPY09_11495 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HPY09_11500 PF04977 Septum formation initiator HPY09_11505 PF02673 Bacitracin resistance protein BacA HPY09_11510 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HPY09_11515 PF02152 Dihydroneopterin aldolase HPY09_11520 PF02660 Glycerol-3-phosphate acyltransferase HPY09_11525 PF00561 alpha/beta hydrolase fold HPY09_11530 PF00814 Glycoprotease family HPY09_11535 PF01165 Ribosomal protein S21 HPY09_11540 PF09424 Yqey-like protein HPY09_11545 PF01807 CHC2 zinc finger HPY09_11545 PF08275 DNA primase catalytic core, N-terminal domain HPY09_11545 PF10410 DnaB-helicase binding domain of primase HPY09_11545 PF08278 DNA primase DnaG DnaB-binding HPY09_11550 PF00140 Sigma-70 factor, region 1.2 HPY09_11550 PF04546 Sigma-70, non-essential region HPY09_11550 PF03979 Sigma-70 factor, region 1.1 HPY09_11550 PF04542 Sigma-70 region 2 HPY09_11550 PF04539 Sigma-70 region 3 HPY09_11550 PF04545 Sigma-70, region 4 HPY09_11565 PF03480 Bacterial extracellular solute-binding protein, family 7 HPY09_11570 PF01380 SIS domain HPY09_11575 PF00455 DeoR C terminal sensor domain HPY09_11575 PF08220 DeoR-like helix-turn-helix domain HPY09_11580 PF00224 Pyruvate kinase, barrel domain HPY09_11580 PF02887 Pyruvate kinase, alpha/beta domain HPY09_11585 PF04402 Protein of unknown function (DUF541) HPY09_11590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_11590 PF03466 LysR substrate binding domain HPY09_11595 PF01810 LysE type translocator HPY09_11600 PF00924 Mechanosensitive ion channel HPY09_11600 PF05552 Conserved TM helix HPY09_11610 PF00162 Phosphoglycerate kinase HPY09_11615 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY09_11615 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY09_11620 PF07715 TonB-dependent Receptor Plug Domain HPY09_11620 PF00593 TonB dependent receptor HPY09_11625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_11625 PF03466 LysR substrate binding domain HPY09_11630 PF02779 Transketolase, pyrimidine binding domain HPY09_11630 PF02780 Transketolase, C-terminal domain HPY09_11630 PF00456 Transketolase, thiamine diphosphate binding domain HPY09_11635 PF00438 S-adenosylmethionine synthetase, N-terminal domain HPY09_11635 PF02772 S-adenosylmethionine synthetase, central domain HPY09_11635 PF02773 S-adenosylmethionine synthetase, C-terminal domain HPY09_11640 PF10263 SprT-like family HPY09_11640 PF17283 SprT-like zinc ribbon domain HPY09_11645 PF04231 Endonuclease I HPY09_11655 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HPY09_11655 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HPY09_11660 PF02622 Uncharacterized ACR, COG1678 HPY09_11665 PF03652 Holliday junction resolvase HPY09_11670 PF01479 S4 domain HPY09_11670 PF00579 tRNA synthetases class I (W and Y) HPY09_11680 PF00437 Type II/IV secretion system protein HPY09_11685 PF00437 Type II/IV secretion system protein HPY09_11690 PF01168 Alanine racemase, N-terminal domain HPY09_11695 PF14748 Pyrroline-5-carboxylate reductase dimerisation HPY09_11695 PF03807 NADP oxidoreductase coenzyme F420-dependent HPY09_11700 PF02325 YGGT family HPY09_11705 PF02594 Uncharacterised ACR, YggU family COG1872 HPY09_11715 PF01725 Ham1 family HPY09_11720 PF04055 Radical SAM superfamily HPY09_11720 PF06969 HemN C-terminal domain HPY09_11725 PF04960 Glutaminase HPY09_11730 PF02390 Putative methyltransferase HPY09_11735 PF14815 NUDIX domain HPY09_11735 PF10576 Iron-sulfur binding domain of endonuclease III HPY09_11735 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY09_11735 PF00633 Helix-hairpin-helix motif HPY09_11740 PF04362 Bacterial Fe(2+) trafficking HPY09_11745 PF01464 Transglycosylase SLT domain HPY09_11745 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HPY09_11770 PF12729 Four helix bundle sensory module for signal transduction HPY09_11770 PF00672 HAMP domain HPY09_11770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_11800 PF00226 DnaJ domain HPY09_11800 PF05099 Tellurite resistance protein TerB HPY09_11805 PF03968 OstA-like protein HPY09_11805 PF04453 LPS transport system D HPY09_11810 PF09312 SurA N-terminal domain HPY09_11815 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HPY09_11820 PF00398 Ribosomal RNA adenine dimethylase HPY09_11825 PF04379 ApaG domain HPY09_11830 PF00149 Calcineurin-like phosphoesterase HPY09_11835 PF00186 Dihydrofolate reductase HPY09_11840 PF12821 Threonine/Serine exporter, ThrE HPY09_11845 PF06738 Putative threonine/serine exporter HPY09_11850 PF01018 GTP1/OBG HPY09_11850 PF01926 50S ribosome-binding GTPase HPY09_11855 PF01016 Ribosomal L27 protein HPY09_11860 PF00829 Ribosomal prokaryotic L21 protein HPY09_11865 PF00348 Polyprenyl synthetase HPY09_11870 PF13520 Amino acid permease HPY09_11875 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HPY09_11875 PF00056 lactate/malate dehydrogenase, NAD binding domain HPY09_11880 PF01316 Arginine repressor, DNA binding domain HPY09_11880 PF02863 Arginine repressor, C-terminal domain HPY09_11885 PF16868 NMT1-like family HPY09_11895 PF00582 Universal stress protein family HPY09_11910 PF06877 Regulator of ribonuclease activity B HPY09_11920 PF01523 Putative modulator of DNA gyrase HPY09_11925 PF00795 Carbon-nitrogen hydrolase HPY09_11930 PF13116 Protein of unknown function HPY09_11930 PF13502 AsmA-like C-terminal region HPY09_11935 PF00575 S1 RNA binding domain HPY09_11935 PF10150 Ribonuclease E/G family HPY09_11940 PF02545 Maf-like protein HPY09_11945 PF04093 rod shape-determining protein MreD HPY09_11950 PF04085 rod shape-determining protein MreC HPY09_11985 PF07963 Prokaryotic N-terminal methylation motif HPY09_11985 PF00114 Pilin (bacterial filament) HPY09_11990 PF07963 Prokaryotic N-terminal methylation motif HPY09_11990 PF00114 Pilin (bacterial filament) HPY09_12000 PF00482 Type II secretion system (T2SS), protein F HPY09_12005 PF00437 Type II/IV secretion system protein HPY09_12015 PF13401 AAA domain HPY09_12015 PF01471 Putative peptidoglycan binding domain HPY09_12020 PF03958 Bacterial type II/III secretion system short domain HPY09_12020 PF00263 Bacterial type II and III secretion system protein HPY09_12040 PF00563 EAL domain HPY09_12040 PF17157 Gammaproteobacterial periplasmic sensor domain HPY09_12040 PF00990 Diguanylate cyclase, GGDEF domain HPY09_12045 PF00436 Single-strand binding protein family HPY09_12050 PF00196 Bacterial regulatory proteins, luxR family HPY09_12055 PF00483 Nucleotidyl transferase HPY09_12060 PF17760 UvrA interaction domain HPY09_12060 PF17755 UvrA DNA-binding domain HPY09_12060 PF00005 ABC transporter HPY09_12070 PF00266 Aminotransferase class-V HPY09_12075 PF01842 ACT domain HPY09_12075 PF00696 Amino acid kinase family HPY09_12080 PF00809 Pterin binding enzyme HPY09_12080 PF02574 Homocysteine S-methyltransferase HPY09_12080 PF02965 Vitamin B12 dependent methionine synthase, activation domain HPY09_12080 PF02310 B12 binding domain HPY09_12080 PF02607 B12 binding domain HPY09_12085 PF00999 Sodium/hydrogen exchanger family HPY09_12120 PF01507 Phosphoadenosine phosphosulfate reductase family HPY09_12125 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HPY09_12125 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HPY09_12130 PF00175 Oxidoreductase NAD-binding domain HPY09_12130 PF00258 Flavodoxin HPY09_12130 PF00667 FAD binding domain HPY09_12150 PF09583 Phage shock protein G (Phageshock_PspG) HPY09_12155 PF01207 Dihydrouridine synthase (Dus) HPY09_12160 PF01475 Ferric uptake regulator family HPY09_12170 PF12706 Beta-lactamase superfamily domain HPY09_12175 PF00342 Phosphoglucose isomerase HPY09_12180 PF01894 Uncharacterised protein family UPF0047 HPY09_12185 PF01168 Alanine racemase, N-terminal domain HPY09_12185 PF00842 Alanine racemase, C-terminal domain HPY09_12190 PF03796 DnaB-like helicase C terminal domain HPY09_12190 PF00772 DnaB-like helicase N terminal domain HPY09_12200 PF03948 Ribosomal protein L9, C-terminal domain HPY09_12200 PF01281 Ribosomal protein L9, N-terminal domain HPY09_12205 PF01084 Ribosomal protein S18 HPY09_12210 PF00436 Single-strand binding protein family HPY09_12215 PF01250 Ribosomal protein S6 HPY09_12220 PF00210 Ferritin-like domain HPY09_12225 PF04324 BFD-like [2Fe-2S] binding domain HPY09_12230 PF03143 Elongation factor Tu C-terminal domain HPY09_12230 PF03144 Elongation factor Tu domain 2 HPY09_12230 PF00009 Elongation factor Tu GTP binding domain HPY09_12235 PF03144 Elongation factor Tu domain 2 HPY09_12235 PF00009 Elongation factor Tu GTP binding domain HPY09_12235 PF14492 Elongation Factor G, domain II HPY09_12235 PF03764 Elongation factor G, domain IV HPY09_12235 PF00679 Elongation factor G C-terminus HPY09_12240 PF00177 Ribosomal protein S7p/S5e HPY09_12245 PF00164 Ribosomal protein S12/S23 HPY09_12255 PF02635 DsrE/DsrF-like family HPY09_12260 PF02635 DsrE/DsrF-like family HPY09_12265 PF13309 HTH domain HPY09_12265 PF08348 YheO-like PAS domain HPY09_12270 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY09_12270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY09_12280 PF04102 SlyX HPY09_12285 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HPY09_12290 PF01145 SPFH domain / Band 7 family HPY09_12295 PF12221 Bacterial membrane protein N terminal HPY09_12295 PF01145 SPFH domain / Band 7 family HPY09_12300 PF16360 GTP-binding GTPase Middle Region HPY09_12300 PF13167 GTP-binding GTPase N-terminal HPY09_12300 PF01926 50S ribosome-binding GTPase HPY09_12305 PF17209 Hfq protein HPY09_12315 PF08676 MutL C terminal dimerisation domain HPY09_12315 PF01119 DNA mismatch repair protein, C-terminal domain HPY09_12320 PF01520 N-acetylmuramoyl-L-alanine amidase HPY09_12325 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HPY09_12330 PF08331 Domain of unknown function (DUF1730) HPY09_12380 PF00929 Exonuclease HPY09_12385 PF03193 RsgA GTPase HPY09_12390 PF02666 Phosphatidylserine decarboxylase HPY09_12395 PF00939 Sodium:sulfate symporter transmembrane region HPY09_12405 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HPY09_12405 PF01676 Metalloenzyme superfamily HPY09_12410 PF01551 Peptidase family M23 HPY09_12420 PF00440 Bacterial regulatory proteins, tetR family HPY09_12420 PF08360 QacR-like protein, C-terminal region HPY09_12425 PF01208 Uroporphyrinogen decarboxylase (URO-D) HPY09_12430 PF00293 NUDIX domain HPY09_12430 PF09297 NADH pyrophosphatase zinc ribbon domain HPY09_12435 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HPY09_12440 PF04998 RNA polymerase Rpb1, domain 5 HPY09_12440 PF04983 RNA polymerase Rpb1, domain 3 HPY09_12440 PF04997 RNA polymerase Rpb1, domain 1 HPY09_12440 PF00623 RNA polymerase Rpb1, domain 2 HPY09_12440 PF05000 RNA polymerase Rpb1, domain 4 HPY09_12445 PF04561 RNA polymerase Rpb2, domain 2 HPY09_12445 PF04563 RNA polymerase beta subunit HPY09_12445 PF10385 RNA polymerase beta subunit external 1 domain HPY09_12445 PF04560 RNA polymerase Rpb2, domain 7 HPY09_12445 PF04565 RNA polymerase Rpb2, domain 3 HPY09_12445 PF00562 RNA polymerase Rpb2, domain 6 HPY09_12450 PF16320 Ribosomal protein L7/L12 dimerisation domain HPY09_12450 PF00542 Ribosomal protein L7/L12 C-terminal domain HPY09_12455 PF00466 Ribosomal protein L10 HPY09_12460 PF00687 Ribosomal protein L1p/L10e family HPY09_12465 PF03946 Ribosomal protein L11, N-terminal domain HPY09_12465 PF00298 Ribosomal protein L11, RNA binding domain HPY09_12470 PF02357 Transcription termination factor nusG HPY09_12470 PF00467 KOW motif HPY09_12475 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HPY09_12480 PF00009 Elongation factor Tu GTP binding domain HPY09_12480 PF03144 Elongation factor Tu domain 2 HPY09_12480 PF03143 Elongation factor Tu C-terminal domain HPY09_12505 PF00485 Phosphoribulokinase / Uridine kinase family HPY09_12510 PF03099 Biotin/lipoate A/B protein ligase family HPY09_12510 PF08279 HTH domain HPY09_12510 PF02237 Biotin protein ligase C terminal domain HPY09_12515 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HPY09_12515 PF01565 FAD binding domain HPY09_12525 PF13091 PLD-like domain HPY09_12595 PF00175 Oxidoreductase NAD-binding domain HPY09_12600 PF00175 Oxidoreductase NAD-binding domain HPY09_12600 PF00970 Oxidoreductase FAD-binding domain HPY09_12600 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY09_12605 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HPY09_12615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY09_12615 PF07498 Rho termination factor, N-terminal domain HPY09_12615 PF07497 Rho termination factor, RNA-binding domain HPY09_12620 PF00085 Thioredoxin HPY09_12625 PF00271 Helicase conserved C-terminal domain HPY09_12625 PF00270 DEAD/DEAH box helicase HPY09_12630 PF02541 Ppx/GppA phosphatase family HPY09_12635 PF00072 Response regulator receiver domain HPY09_12635 PF09456 RcsC Alpha-Beta-Loop (ABL) HPY09_12635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_12635 PF00512 His Kinase A (phospho-acceptor) domain HPY09_12640 PF12832 MFS_1 like family HPY09_12660 PF01220 Dehydroquinase class II HPY09_12665 PF00364 Biotin-requiring enzyme HPY09_12670 PF02785 Biotin carboxylase C-terminal domain HPY09_12670 PF00289 Biotin carboxylase, N-terminal domain HPY09_12670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HPY09_12680 PF01207 Dihydrouridine synthase (Dus) HPY09_12685 PF02954 Bacterial regulatory protein, Fis family HPY09_12690 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY09_12690 PF00356 Bacterial regulatory proteins, lacI family HPY09_12695 PF11647 Membrane Localization Domain HPY09_12700 PF01699 Sodium/calcium exchanger protein HPY09_12705 PF00920 Dehydratase family HPY09_12710 PF01202 Shikimate kinase HPY09_12715 PF02447 GntP family permease HPY09_12720 PF01081 KDPG and KHG aldolase HPY09_12725 PF00593 TonB dependent receptor HPY09_12725 PF07715 TonB-dependent Receptor Plug Domain HPY09_12740 PF17200 Single Cache domain 2 HPY09_12740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_12740 PF00672 HAMP domain HPY09_12750 PF13520 Amino acid permease HPY09_12755 PF18500 CadC C-terminal domain 1 HPY09_12755 PF00486 Transcriptional regulatory protein, C terminal HPY09_12760 PF13411 MerR HTH family regulatory protein HPY09_12770 PF02142 MGS-like domain HPY09_12770 PF01808 AICARFT/IMPCHase bienzyme HPY09_12775 PF02843 Phosphoribosylglycinamide synthetase, C domain HPY09_12775 PF02844 Phosphoribosylglycinamide synthetase, N domain HPY09_12775 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HPY09_12785 PF00216 Bacterial DNA-binding protein HPY09_12790 PF00571 CBS domain HPY09_12790 PF01595 Cyclin M transmembrane N-terminal domain HPY09_12795 PF04222 Protein of unknown function (DUF416) HPY09_12800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY09_12805 PF03167 Uracil DNA glycosylase superfamily HPY09_12810 PF00924 Mechanosensitive ion channel HPY09_12815 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HPY09_12815 PF10996 Beta-Casp domain HPY09_12815 PF00753 Metallo-beta-lactamase superfamily HPY09_12820 PF02348 Cytidylyltransferase HPY09_12830 PF00793 DAHP synthetase I family HPY09_12835 PF05159 Capsule polysaccharide biosynthesis protein HPY09_12850 PF10531 SLBB domain HPY09_12850 PF02563 Polysaccharide biosynthesis/export protein HPY09_12860 PF00005 ABC transporter HPY09_12865 PF01061 ABC-2 type transporter HPY09_12870 PF00571 CBS domain HPY09_12870 PF01380 SIS domain HPY09_12880 PF02397 Bacterial sugar transferase HPY09_12890 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF HPY09_12900 PF06082 Exopolysaccharide biosynthesis protein YbjH HPY09_12910 PF02719 Polysaccharide biosynthesis protein HPY09_12915 PF02397 Bacterial sugar transferase HPY09_12920 PF01370 NAD dependent epimerase/dehydratase family HPY09_12935 PF00535 Glycosyl transferase family 2 HPY09_12960 PF02350 UDP-N-acetylglucosamine 2-epimerase HPY09_12970 PF02719 Polysaccharide biosynthesis protein HPY09_12970 PF08485 Polysaccharide biosynthesis protein C-terminal HPY09_12975 PF00534 Glycosyl transferases group 1 HPY09_13005 PF01370 NAD dependent epimerase/dehydratase family HPY09_13010 PF01522 Polysaccharide deacetylase HPY09_13010 PF00457 Glycosyl hydrolases family 11 HPY09_13030 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY09_13035 PF04488 Glycosyltransferase sugar-binding region containing DXD motif HPY09_13040 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HPY09_13070 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY09_13075 PF00535 Glycosyl transferase family 2 HPY09_13080 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HPY09_13085 PF01467 Cytidylyltransferase-like HPY09_13090 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HPY09_13090 PF06827 Zinc finger found in FPG and IleRS HPY09_13090 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HPY09_13100 PF00471 Ribosomal protein L33 HPY09_13105 PF00830 Ribosomal L28 family HPY09_13110 PF04002 RadC-like JAB domain HPY09_13115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_13115 PF00672 HAMP domain HPY09_13115 PF02743 Cache domain HPY09_13120 PF04127 DNA / pantothenate metabolism flavoprotein HPY09_13120 PF02441 Flavoprotein HPY09_13130 PF00440 Bacterial regulatory proteins, tetR family HPY09_13135 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY09_13140 PF03279 Bacterial lipid A biosynthesis acyltransferase HPY09_13145 PF00156 Phosphoribosyl transferase domain HPY09_13150 PF03725 3' exoribonuclease family, domain 2 HPY09_13150 PF01138 3' exoribonuclease family, domain 1 HPY09_13155 PF08340 Domain of unknown function (DUF1732) HPY09_13155 PF03755 YicC-like family, N-terminal region HPY09_13160 PF03350 Uncharacterized protein family, UPF0114 HPY09_13165 PF00267 Gram-negative porin HPY09_13170 PF00367 phosphotransferase system, EIIB HPY09_13170 PF02378 Phosphotransferase system, EIIC HPY09_13175 PF13580 SIS domain HPY09_13180 PF01380 SIS domain HPY09_13180 PF01418 Helix-turn-helix domain, rpiR family HPY09_13190 PF00271 Helicase conserved C-terminal domain HPY09_13190 PF00570 HRDC domain HPY09_13190 PF09382 RQC domain HPY09_13190 PF00270 DEAD/DEAH box helicase HPY09_13190 PF16124 RecQ zinc-binding HPY09_13195 PF00892 EamA-like transporter family HPY09_13205 PF12833 Helix-turn-helix domain HPY09_13210 PF01810 LysE type translocator HPY09_13215 PF00580 UvrD/REP helicase N-terminal domain HPY09_13215 PF13361 UvrD-like helicase C-terminal domain HPY09_13220 PF01432 Peptidase family M3 HPY09_13225 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HPY09_13230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY09_13230 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY09_13240 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY09_13240 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_13250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY09_13255 PF00005 ABC transporter HPY09_13255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY09_13290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HPY09_13295 PF00580 UvrD/REP helicase N-terminal domain HPY09_13295 PF13361 UvrD-like helicase C-terminal domain HPY09_13300 PF00440 Bacterial regulatory proteins, tetR family HPY09_13305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY09_13310 PF00873 AcrB/AcrD/AcrF family HPY09_13315 PF04380 Membrane fusogenic activity HPY09_13320 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HPY09_13320 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HPY09_13325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_13325 PF03466 LysR substrate binding domain HPY09_13395 PF12724 Flavodoxin domain HPY09_13400 PF02386 Cation transport protein HPY09_13405 PF01205 Uncharacterized protein family UPF0029 HPY09_13405 PF09186 Domain of unknown function (DUF1949) HPY09_13410 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HPY09_13410 PF00378 Enoyl-CoA hydratase/isomerase HPY09_13410 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HPY09_13415 PF02803 Thiolase, C-terminal domain HPY09_13415 PF00108 Thiolase, N-terminal domain HPY09_13420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_13420 PF03466 LysR substrate binding domain HPY09_13425 PF07690 Major Facilitator Superfamily HPY09_13430 PF00132 Bacterial transferase hexapeptide (six repeats) HPY09_13430 PF12804 MobA-like NTP transferase domain HPY09_13435 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HPY09_13435 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HPY09_13440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY09_13440 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY09_13445 PF00231 ATP synthase HPY09_13450 PF00306 ATP synthase alpha/beta chain, C terminal domain HPY09_13450 PF02874 ATP synthase alpha/beta family, beta-barrel domain HPY09_13450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HPY09_13455 PF00213 ATP synthase delta (OSCP) subunit HPY09_13460 PF00430 ATP synthase B/B' CF(0) HPY09_13465 PF00137 ATP synthase subunit C HPY09_13470 PF00119 ATP synthase A chain HPY09_13475 PF03899 ATP synthase I chain HPY09_13480 PF02195 ParB-like nuclease domain HPY09_13480 PF17762 HTH domain found in ParB protein HPY09_13485 PF13614 AAA domain HPY09_13490 PF02527 rRNA small subunit methyltransferase G HPY09_13495 PF01134 Glucose inhibited division protein A HPY09_13495 PF13932 GidA associated domain HPY09_13500 PF00258 Flavodoxin HPY09_13505 PF10396 GTP-binding protein TrmE N-terminus HPY09_13505 PF12631 MnmE helical domain HPY09_13505 PF01926 50S ribosome-binding GTPase HPY09_13510 PF02096 60Kd inner membrane protein HPY09_13510 PF14849 YidC periplasmic domain HPY09_13515 PF01809 Putative membrane protein insertion efficiency factor HPY09_13520 PF00825 Ribonuclease P HPY09_13525 PF00468 Ribosomal protein L34 HPY09_13530 PF00005 ABC transporter HPY09_13535 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_13540 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY09_13545 PF02195 ParB-like nuclease domain HPY09_13545 PF08775 ParB family HPY09_13550 PF13614 AAA domain HPY09_13550 PF18607 ParA helix turn helix domain HPY09_13575 PF01709 Transcriptional regulator HPY09_13580 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HPY09_13580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY09_13585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_13585 PF17200 Single Cache domain 2 HPY09_13585 PF00672 HAMP domain HPY09_13590 PF10928 Protein of unknown function (DUF2810) HPY09_13595 PF00196 Bacterial regulatory proteins, luxR family HPY09_13595 PF17874 MalT-like TPR region HPY09_13600 PF00343 Carbohydrate phosphorylase HPY09_13610 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY09_13610 PF02806 Alpha amylase, C-terminal all-beta domain HPY09_13610 PF00128 Alpha amylase, catalytic domain HPY09_13615 PF05638 Type VI secretion system effector, Hcp HPY09_13620 PF04717 Type VI secretion system, phage-baseplate injector HPY09_13620 PF16671 Actin cross-linking domain HPY09_13645 PF01168 Alanine racemase, N-terminal domain HPY09_13645 PF00842 Alanine racemase, C-terminal domain HPY09_13645 PF01757 Acyltransferase family HPY09_13655 PF00939 Sodium:sulfate symporter transmembrane region HPY09_13660 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HPY09_13665 PF00704 Glycosyl hydrolases family 18 HPY09_13665 PF08329 Chitinase A, N-terminal domain HPY09_13690 PF01569 PAP2 superfamily HPY09_13695 PF04389 Peptidase family M28 HPY09_13695 PF02225 PA domain HPY09_13700 PF00375 Sodium:dicarboxylate symporter family HPY09_13710 PF02630 SCO1/SenC HPY09_13725 PF03616 Sodium/glutamate symporter HPY09_13730 PF12945 Flagellar protein YcgR HPY09_13730 PF07238 PilZ domain HPY09_13745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HPY09_13745 PF00529 HlyD membrane-fusion protein of T1SS HPY09_13750 PF11742 Protein of unknown function (DUF3302) HPY09_13755 PF00990 Diguanylate cyclase, GGDEF domain HPY09_13770 PF01048 Phosphorylase superfamily HPY09_13775 PF08349 Protein of unknown function (DUF1722) HPY09_13780 PF13411 MerR HTH family regulatory protein HPY09_13785 PF03441 FAD binding domain of DNA photolyase HPY09_13785 PF00875 DNA photolyase HPY09_13790 PF01476 LysM domain HPY09_13790 PF03734 L,D-transpeptidase catalytic domain HPY09_13790 PF17969 L,D-transpeptidase C-terminal domain HPY09_13800 PF00270 DEAD/DEAH box helicase HPY09_13800 PF00271 Helicase conserved C-terminal domain HPY09_13805 PF00326 Prolyl oligopeptidase family HPY09_13805 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HPY09_13810 PF07715 TonB-dependent Receptor Plug Domain HPY09_13810 PF00593 TonB dependent receptor HPY09_13830 PF12729 Four helix bundle sensory module for signal transduction HPY09_13830 PF00672 HAMP domain HPY09_13830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_13835 PF12849 PBP superfamily domain HPY09_13840 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_13845 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_13850 PF00005 ABC transporter HPY09_13855 PF00072 Response regulator receiver domain HPY09_13855 PF00990 Diguanylate cyclase, GGDEF domain HPY09_13870 PF01740 STAS domain HPY09_13870 PF00916 Sulfate permease family HPY09_13880 PF01476 LysM domain HPY09_13880 PF08525 Opacity-associated protein A N-terminal motif HPY09_13880 PF01551 Peptidase family M23 HPY09_13885 PF00563 EAL domain HPY09_13885 PF13188 PAS domain HPY09_13885 PF00990 Diguanylate cyclase, GGDEF domain HPY09_13885 PF03707 Bacterial signalling protein N terminal repeat HPY09_13890 PF03466 LysR substrate binding domain HPY09_13890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_13895 PF07690 Major Facilitator Superfamily HPY09_13900 PF09278 MerR, DNA binding HPY09_13900 PF00376 MerR family regulatory protein HPY09_13915 PF00375 Sodium:dicarboxylate symporter family HPY09_13930 PF02001 Protein of unknown function DUF134 HPY09_13955 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY09_13955 PF01447 Thermolysin metallopeptidase, catalytic domain HPY09_13955 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY09_13955 PF01483 Proprotein convertase P-domain HPY09_13965 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HPY09_13965 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HPY09_13970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY09_13970 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HPY09_13975 PF00581 Rhodanese-like domain HPY09_13980 PF00563 EAL domain HPY09_13980 PF00196 Bacterial regulatory proteins, luxR family HPY09_13985 PF13419 Haloacid dehalogenase-like hydrolase HPY09_13990 PF00916 Sulfate permease family HPY09_13990 PF01740 STAS domain HPY09_13995 PF00849 RNA pseudouridylate synthase HPY09_14055 PF10431 C-terminal, D2-small domain, of ClpB protein HPY09_14055 PF07724 AAA domain (Cdc48 subfamily) HPY09_14055 PF00004 ATPase family associated with various cellular activities (AAA) HPY09_14055 PF17871 AAA lid domain HPY09_14100 PF05025 RbsD / FucU transport protein family HPY09_14105 PF00005 ABC transporter HPY09_14110 PF02653 Branched-chain amino acid transport system / permease component HPY09_14115 PF13407 Periplasmic binding protein domain HPY09_14120 PF00294 pfkB family carbohydrate kinase HPY09_14125 PF00356 Bacterial regulatory proteins, lacI family HPY09_14130 PF04973 Nicotinamide mononucleotide transporter HPY09_14135 PF01048 Phosphorylase superfamily HPY09_14155 PF03009 Glycerophosphoryl diester phosphodiesterase family HPY09_14160 PF07690 Major Facilitator Superfamily HPY09_14175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_14175 PF02743 Cache domain HPY09_14175 PF00512 His Kinase A (phospho-acceptor) domain HPY09_14180 PF02954 Bacterial regulatory protein, Fis family HPY09_14180 PF00072 Response regulator receiver domain HPY09_14180 PF00158 Sigma-54 interaction domain HPY09_14195 PF01266 FAD dependent oxidoreductase HPY09_14200 PF12561 ToxR activated gene A lipoprotein domain HPY09_14200 PF00041 Fibronectin type III domain HPY09_14205 PF01327 Polypeptide deformylase HPY09_14210 PF00042 Globin HPY09_14210 PF00970 Oxidoreductase FAD-binding domain HPY09_14210 PF00175 Oxidoreductase NAD-binding domain HPY09_14215 PF03334 Na+/H+ antiporter subunit HPY09_14240 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HPY09_14240 PF00361 Proton-conducting membrane transporter HPY09_14240 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter HPY09_14240 PF13244 Domain of unknown function (DUF4040) HPY09_14250 PF00582 Universal stress protein family HPY09_14255 PF03222 Tryptophan/tyrosine permease family HPY09_14260 PF01212 Beta-eliminating lyase HPY09_14270 PF12843 Putative quorum-sensing-regulated virulence factor HPY09_14280 PF00563 EAL domain HPY09_14280 PF00990 Diguanylate cyclase, GGDEF domain HPY09_14280 PF08448 PAS fold HPY09_14285 PF00313 'Cold-shock' DNA-binding domain HPY09_14300 PF13519 von Willebrand factor type A domain HPY09_14300 PF07584 Aerotolerance regulator N-terminal HPY09_14315 PF01882 Protein of unknown function DUF58 HPY09_14320 PF17863 AAA lid domain HPY09_14320 PF07726 ATPase family associated with various cellular activities (AAA) HPY09_14325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_14325 PF00672 HAMP domain HPY09_14325 PF02743 Cache domain HPY09_14340 PF01773 Na+ dependent nucleoside transporter N-terminus HPY09_14340 PF07662 Na+ dependent nucleoside transporter C-terminus HPY09_14340 PF07670 Nucleoside recognition HPY09_14345 PF01546 Peptidase family M20/M25/M40 HPY09_14345 PF07687 Peptidase dimerisation domain HPY09_14355 PF01590 GAF domain HPY09_14355 PF00158 Sigma-54 interaction domain HPY09_14360 PF00970 Oxidoreductase FAD-binding domain HPY09_14360 PF00042 Globin HPY09_14360 PF00175 Oxidoreductase NAD-binding domain HPY09_14365 PF00313 'Cold-shock' DNA-binding domain HPY09_14370 PF03889 Alternative ribosome-rescue factor A HPY09_14385 PF00072 Response regulator receiver domain HPY09_14395 PF01256 Carbohydrate kinase HPY09_14395 PF03853 YjeF-related protein N-terminus HPY09_14400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY09_14400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY09_14410 PF07885 Ion channel HPY09_14420 PF00478 IMP dehydrogenase / GMP reductase domain HPY09_14435 PF01797 Transposase IS200 like HPY09_14445 PF00270 DEAD/DEAH box helicase HPY09_14445 PF00271 Helicase conserved C-terminal domain HPY09_14450 PF03605 Anaerobic c4-dicarboxylate membrane transporter HPY09_14455 PF02540 NAD synthase HPY09_14465 PF11849 Domain of unknown function (DUF3369) HPY09_14475 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY09_14475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_14475 PF00512 His Kinase A (phospho-acceptor) domain HPY09_14485 PF03553 Na+/H+ antiporter family HPY09_14490 PF07690 Major Facilitator Superfamily HPY09_14500 PF05230 MASE2 domain HPY09_14500 PF00990 Diguanylate cyclase, GGDEF domain HPY09_14505 PF00657 GDSL-like Lipase/Acylhydrolase HPY09_14510 PF12563 Hemolytic toxin N terminal HPY09_14510 PF16458 Beta-prism lectin HPY09_14510 PF07968 Leukocidin/Hemolysin toxin family HPY09_14515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_14515 PF00672 HAMP domain HPY09_14515 PF12729 Four helix bundle sensory module for signal transduction HPY09_14520 PF00561 alpha/beta hydrolase fold HPY09_14525 PF03280 Proteobacterial lipase chaperone protein HPY09_14530 PF05547 Immune inhibitor A peptidase M6 HPY09_14530 PF00801 PKD domain HPY09_14550 PF01032 FecCD transport family HPY09_14555 PF01032 FecCD transport family HPY09_14560 PF00005 ABC transporter HPY09_14565 PF12833 Helix-turn-helix domain HPY09_14570 PF00593 TonB dependent receptor HPY09_14570 PF07715 TonB-dependent Receptor Plug Domain HPY09_14580 PF00871 Acetokinase family HPY09_14585 PF01022 Bacterial regulatory protein, arsR family HPY09_14590 PF01758 Sodium Bile acid symporter family HPY09_14610 PF03466 LysR substrate binding domain HPY09_14610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_14625 PF00486 Transcriptional regulatory protein, C terminal HPY09_14625 PF00072 Response regulator receiver domain HPY09_14635 PF04542 Sigma-70 region 2 HPY09_14635 PF04545 Sigma-70, region 4 HPY09_14655 PF01261 Xylose isomerase-like TIM barrel HPY09_14660 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HPY09_14670 PF00596 Class II Aldolase and Adducin N-terminal domain HPY09_14675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY09_14680 PF03611 PTS system sugar-specific permease component HPY09_14685 PF00455 DeoR C terminal sensor domain HPY09_14685 PF08220 DeoR-like helix-turn-helix domain HPY09_14700 PF06736 Protein of unknown function (DUF1211) HPY09_14710 PF00857 Isochorismatase family HPY09_14715 PF02678 Pirin HPY09_14715 PF17954 Quercetinase C-terminal cupin domain HPY09_14720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_14720 PF03466 LysR substrate binding domain HPY09_14725 PF00128 Alpha amylase, catalytic domain HPY09_14730 PF00132 Bacterial transferase hexapeptide (six repeats) HPY09_14745 PF00486 Transcriptional regulatory protein, C terminal HPY09_14745 PF00072 Response regulator receiver domain HPY09_14750 PF13426 PAS domain HPY09_14750 PF00512 His Kinase A (phospho-acceptor) domain HPY09_14750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_14750 PF00672 HAMP domain HPY09_14750 PF14827 Double sensory domain of two-component sensor kinase HPY09_14785 PF03466 LysR substrate binding domain HPY09_14785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_14790 PF00672 HAMP domain HPY09_14790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_14790 PF02743 Cache domain HPY09_14795 PF00282 Pyridoxal-dependent decarboxylase conserved domain HPY09_14800 PF07943 Penicillin-binding protein 5, C-terminal domain HPY09_14800 PF00768 D-alanyl-D-alanine carboxypeptidase HPY09_14815 PF00194 Eukaryotic-type carbonic anhydrase HPY09_14820 PF02347 Glycine cleavage system P-protein HPY09_14825 PF01597 Glycine cleavage H-protein HPY09_14830 PF00464 Serine hydroxymethyltransferase HPY09_14840 PF01571 Aminomethyltransferase folate-binding domain HPY09_14840 PF08669 Glycine cleavage T-protein C-terminal barrel domain HPY09_14845 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HPY09_14845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HPY09_14845 PF02824 TGS domain HPY09_14845 PF03129 Anticodon binding domain HPY09_14850 PF05198 Translation initiation factor IF-3, N-terminal domain HPY09_14850 PF00707 Translation initiation factor IF-3, C-terminal domain HPY09_14855 PF01632 Ribosomal protein L35 HPY09_14860 PF00453 Ribosomal protein L20 HPY09_14865 PF13495 Phage integrase, N-terminal SAM-like domain HPY09_14865 PF00589 Phage integrase family HPY09_14870 PF12833 Helix-turn-helix domain HPY09_14870 PF01965 DJ-1/PfpI family HPY09_14940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY09_14975 PF02567 Phenazine biosynthesis-like protein HPY09_15035 PF02567 Phenazine biosynthesis-like protein HPY09_15060 PF00132 Bacterial transferase hexapeptide (six repeats) HPY09_15070 PF00583 Acetyltransferase (GNAT) family HPY09_15100 PF02567 Phenazine biosynthesis-like protein HPY09_15395 PF00561 alpha/beta hydrolase fold HPY09_15495 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY09_15500 PF00132 Bacterial transferase hexapeptide (six repeats) HPY09_15545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY09_15555 PF01966 HD domain HPY09_15555 PF13286 Phosphohydrolase-associated domain HPY09_15595 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HPY09_15605 PF00583 Acetyltransferase (GNAT) family HPY09_15665 PF02016 LD-carboxypeptidase N-terminal domain HPY09_15665 PF17676 LD-carboxypeptidase C-terminal domain HPY09_15765 PF07859 alpha/beta hydrolase fold HPY09_15815 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HPY09_15830 PF08378 Nuclease-related domain HPY09_15840 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HPY09_15875 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HPY09_15935 PF01966 HD domain HPY09_15960 PF00583 Acetyltransferase (GNAT) family HPY09_15975 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB HPY09_15980 PF01381 Helix-turn-helix HPY09_16040 PF00583 Acetyltransferase (GNAT) family HPY09_16045 PF01965 DJ-1/PfpI family HPY09_16045 PF12833 Helix-turn-helix domain HPY09_16075 PF01872 RibD C-terminal domain HPY09_16075 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY09_16090 PF07859 alpha/beta hydrolase fold HPY09_16160 PF06271 RDD family HPY09_16280 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HPY09_16290 PF04607 Region found in RelA / SpoT proteins HPY09_16610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY09_16695 PF09722 Protein of unknown function (DUF2384) HPY09_16710 PF01797 Transposase IS200 like HPY09_16715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HPY09_16715 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HPY09_16720 PF05736 OprF membrane domain HPY09_16720 PF00691 OmpA family HPY09_16725 PF00672 HAMP domain HPY09_16725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_16730 PF01266 FAD dependent oxidoreductase HPY09_16730 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HPY09_16735 PF00294 pfkB family carbohydrate kinase HPY09_16740 PF00251 Glycosyl hydrolases family 32 N-terminal domain HPY09_16740 PF08244 Glycosyl hydrolases family 32 C terminal HPY09_16750 PF00367 phosphotransferase system, EIIB HPY09_16750 PF02378 Phosphotransferase system, EIIC HPY09_16790 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY09_16790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HPY09_16805 PF04143 Sulphur transport HPY09_16820 PF00873 AcrB/AcrD/AcrF family HPY09_16825 PF00881 Nitroreductase family HPY09_16830 PF03992 Antibiotic biosynthesis monooxygenase HPY09_16835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_16835 PF03466 LysR substrate binding domain HPY09_16845 PF06942 GlpM protein HPY09_16860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HPY09_16860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HPY09_16885 PF00456 Transketolase, thiamine diphosphate binding domain HPY09_16885 PF02780 Transketolase, C-terminal domain HPY09_16885 PF02779 Transketolase, pyrimidine binding domain HPY09_16890 PF00923 Transaldolase/Fructose-6-phosphate aldolase HPY09_16895 PF04198 Putative sugar-binding domain HPY09_16900 PF00581 Rhodanese-like domain HPY09_16910 PF00899 ThiF family HPY09_16915 PF03454 MoeA C-terminal region (domain IV) HPY09_16915 PF00994 Probable molybdopterin binding domain HPY09_16915 PF03453 MoeA N-terminal region (domain I and II) HPY09_16920 PF01227 GTP cyclohydrolase I HPY09_16925 PF01625 Peptide methionine sulfoxide reductase HPY09_16925 PF01641 SelR domain HPY09_16930 PF01268 Formate--tetrahydrofolate ligase HPY09_16935 PF01741 Large-conductance mechanosensitive channel, MscL HPY09_16950 PF03466 LysR substrate binding domain HPY09_16950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_16955 PF13419 Haloacid dehalogenase-like hydrolase HPY09_16960 PF01272 Transcription elongation factor, GreA/GreB, C-term HPY09_16960 PF14760 Rnk N-terminus HPY09_16965 PF13419 Haloacid dehalogenase-like hydrolase HPY09_16975 PF00266 Aminotransferase class-V HPY09_16985 PF00005 ABC transporter HPY09_16990 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_16995 PF00392 Bacterial regulatory proteins, gntR family HPY09_16995 PF07702 UTRA domain HPY09_17005 PF00854 POT family HPY09_17030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY09_17035 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_17040 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_17040 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY09_17045 PF00005 ABC transporter HPY09_17045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY09_17050 PF00132 Bacterial transferase hexapeptide (six repeats) HPY09_17050 PF12804 MobA-like NTP transferase domain HPY09_17050 PF03479 Plants and Prokaryotes Conserved (PCC) domain HPY09_17065 PF00043 Glutathione S-transferase, C-terminal domain HPY09_17065 PF02798 Glutathione S-transferase, N-terminal domain HPY09_17085 PF03061 Thioesterase superfamily HPY09_17095 PF12793 Sugar transport-related sRNA regulator N-term HPY09_17095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY09_17100 PF07715 TonB-dependent Receptor Plug Domain HPY09_17100 PF00593 TonB dependent receptor HPY09_17105 PF03466 LysR substrate binding domain HPY09_17105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_17110 PF13607 Succinyl-CoA ligase like flavodoxin domain HPY09_17110 PF13380 CoA binding domain HPY09_17110 PF00583 Acetyltransferase (GNAT) family HPY09_17120 PF07478 D-ala D-ala ligase C-terminus HPY09_17120 PF01820 D-ala D-ala ligase N-terminus HPY09_17130 PF01253 Translation initiation factor SUI1 HPY09_17135 PF03701 Uncharacterised protein family (UPF0181) HPY09_17150 PF00486 Transcriptional regulatory protein, C terminal HPY09_17150 PF00072 Response regulator receiver domain HPY09_17160 PF02233 NAD(P) transhydrogenase beta subunit HPY09_17165 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HPY09_17165 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HPY09_17165 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HPY09_17180 PF00990 Diguanylate cyclase, GGDEF domain HPY09_17180 PF17158 Membrane-associated sensor, integral membrane domain HPY09_17200 PF17151 Periplasmic sensor domain HPY09_17200 PF00990 Diguanylate cyclase, GGDEF domain HPY09_17230 PF08274 PhnA Zinc-Ribbon HPY09_17230 PF03831 PhnA domain HPY09_17240 PF03741 Integral membrane protein TerC family HPY09_17245 PF00149 Calcineurin-like phosphoesterase HPY09_17245 PF02872 5'-nucleotidase, C-terminal domain HPY09_17250 PF11398 Protein of unknown function (DUF2813) HPY09_17255 PF06496 Protein of unknown function (DUF1097) HPY09_17260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_17260 PF03466 LysR substrate binding domain HPY09_17265 PF01226 Formate/nitrite transporter HPY09_17270 PF04264 YceI-like domain HPY09_17275 PF01292 Prokaryotic cytochrome b561 HPY09_17285 PF10388 EAL-domain associated signalling protein domain HPY09_17285 PF00563 EAL domain HPY09_17300 PF02416 mttA/Hcf106 family HPY09_17305 PF00072 Response regulator receiver domain HPY09_17305 PF00486 Transcriptional regulatory protein, C terminal HPY09_17310 PF02702 Osmosensitive K+ channel His kinase sensor domain HPY09_17310 PF00512 His Kinase A (phospho-acceptor) domain HPY09_17310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_17310 PF13493 Domain of unknown function (DUF4118) HPY09_17315 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HPY09_17315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HPY09_17315 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HPY09_17315 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HPY09_17315 PF10371 Domain of unknown function HPY09_17320 PF02705 K+ potassium transporter HPY09_17325 PF01926 50S ribosome-binding GTPase HPY09_17330 PF02492 CobW/HypB/UreG, nucleotide-binding domain HPY09_17330 PF07683 Cobalamin synthesis protein cobW C-terminal domain HPY09_17335 PF00654 Voltage gated chloride channel HPY09_17345 PF00155 Aminotransferase class I and II HPY09_17350 PF00072 Response regulator receiver domain HPY09_17350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_17355 PF13476 AAA domain HPY09_17360 PF00149 Calcineurin-like phosphoesterase HPY09_17360 PF12320 Type 5 capsule protein repressor C-terminal domain HPY09_17365 PF00356 Bacterial regulatory proteins, lacI family HPY09_17365 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY09_17370 PF00381 PTS HPr component phosphorylation site HPY09_17370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY09_17375 PF00294 pfkB family carbohydrate kinase HPY09_17380 PF02378 Phosphotransferase system, EIIC HPY09_17380 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY09_17385 PF08443 RimK-like ATP-grasp domain HPY09_17385 PF18030 RimK PreATP-grasp domain HPY09_17390 PF00155 Aminotransferase class I and II HPY09_17400 PF13597 Anaerobic ribonucleoside-triphosphate reductase HPY09_17400 PF03477 ATP cone domain HPY09_17410 PF13419 Haloacid dehalogenase-like hydrolase HPY09_17415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_17415 PF00672 HAMP domain HPY09_17415 PF12729 Four helix bundle sensory module for signal transduction HPY09_17420 PF03606 C4-dicarboxylate anaerobic carrier HPY09_17425 PF03315 Serine dehydratase beta chain HPY09_17425 PF03313 Serine dehydratase alpha chain HPY09_17430 PF00072 Response regulator receiver domain HPY09_17430 PF00196 Bacterial regulatory proteins, luxR family HPY09_17435 PF00672 HAMP domain HPY09_17435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_17435 PF07730 Histidine kinase HPY09_17435 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HPY09_17440 PF12838 4Fe-4S dicluster domain HPY09_17440 PF13187 4Fe-4S dicluster domain HPY09_17450 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HPY09_17450 PF01568 Molydopterin dinucleotide binding domain HPY09_17450 PF00384 Molybdopterin oxidoreductase HPY09_17455 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HPY09_17460 PF03264 NapC/NirT cytochrome c family, N-terminal region HPY09_17470 PF01966 HD domain HPY09_17475 PF00072 Response regulator receiver domain HPY09_17475 PF00196 Bacterial regulatory proteins, luxR family HPY09_17480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_17480 PF05231 MASE1 HPY09_17480 PF07730 Histidine kinase HPY09_17485 PF07690 Major Facilitator Superfamily HPY09_17495 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_17500 PF00005 ABC transporter HPY09_17500 PF08402 TOBE domain HPY09_17505 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HPY09_17515 PF00108 Thiolase, N-terminal domain HPY09_17515 PF02803 Thiolase, C-terminal domain HPY09_17520 PF00106 short chain dehydrogenase HPY09_17525 PF02355 Protein export membrane protein HPY09_17525 PF07549 SecD/SecF GG Motif HPY09_17530 PF02355 Protein export membrane protein HPY09_17530 PF13721 SecD export protein N-terminal TM region HPY09_17530 PF07549 SecD/SecF GG Motif HPY09_17545 PF00990 Diguanylate cyclase, GGDEF domain HPY09_17545 PF17158 Membrane-associated sensor, integral membrane domain HPY09_17550 PF00483 Nucleotidyl transferase HPY09_17555 PF00704 Glycosyl hydrolases family 18 HPY09_17555 PF06483 Chitinase C HPY09_17560 PF00465 Iron-containing alcohol dehydrogenase HPY09_17570 PF14532 Sigma-54 interaction domain HPY09_17570 PF02954 Bacterial regulatory protein, Fis family HPY09_17570 PF00072 Response regulator receiver domain HPY09_17575 PF02743 Cache domain HPY09_17575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_17575 PF00512 His Kinase A (phospho-acceptor) domain HPY09_17585 PF07690 Major Facilitator Superfamily HPY09_17590 PF00224 Pyruvate kinase, barrel domain HPY09_17590 PF02887 Pyruvate kinase, alpha/beta domain HPY09_17595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_17595 PF00512 His Kinase A (phospho-acceptor) domain HPY09_17595 PF17149 Periplasmic sensor domain found in signal transduction proteins HPY09_17595 PF01627 Hpt domain HPY09_17595 PF00072 Response regulator receiver domain HPY09_17595 PF00672 HAMP domain HPY09_17600 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HPY09_17605 PF02142 MGS-like domain HPY09_17610 PF00857 Isochorismatase family HPY09_17615 PF01219 Prokaryotic diacylglycerol kinase HPY09_17620 PF12462 DNA helicase IV / RNA helicase N terminal HPY09_17620 PF00580 UvrD/REP helicase N-terminal domain HPY09_17620 PF13361 UvrD-like helicase C-terminal domain HPY09_17625 PF12805 FUSC-like inner membrane protein yccS HPY09_17630 PF08448 PAS fold HPY09_17630 PF00512 His Kinase A (phospho-acceptor) domain HPY09_17630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_17630 PF00072 Response regulator receiver domain HPY09_17630 PF13188 PAS domain HPY09_17655 PF00005 ABC transporter HPY09_17655 PF03459 TOBE domain HPY09_17660 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_17670 PF07685 CobB/CobQ-like glutamine amidotransferase domain HPY09_17670 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HPY09_17710 PF12833 Helix-turn-helix domain HPY09_17710 PF02311 AraC-like ligand binding domain HPY09_17715 PF00593 TonB dependent receptor HPY09_17715 PF07715 TonB-dependent Receptor Plug Domain HPY09_17720 PF07690 Major Facilitator Superfamily HPY09_17725 PF00550 Phosphopantetheine attachment site HPY09_17725 PF08242 Methyltransferase domain HPY09_17725 PF00501 AMP-binding enzyme HPY09_17725 PF00668 Condensation domain HPY09_17730 PF13193 AMP-binding enzyme C-terminal domain HPY09_17730 PF00550 Phosphopantetheine attachment site HPY09_17730 PF00501 AMP-binding enzyme HPY09_17730 PF00668 Condensation domain HPY09_17745 PF00425 chorismate binding enzyme HPY09_17750 PF13193 AMP-binding enzyme C-terminal domain HPY09_17750 PF00501 AMP-binding enzyme HPY09_17755 PF02028 BCCT, betaine/carnitine/choline family transporter HPY09_17760 PF13977 BetI-type transcriptional repressor, C-terminal HPY09_17760 PF00440 Bacterial regulatory proteins, tetR family HPY09_17765 PF00171 Aldehyde dehydrogenase family HPY09_17770 PF05199 GMC oxidoreductase HPY09_17770 PF00732 GMC oxidoreductase HPY09_17775 PF00664 ABC transporter transmembrane region HPY09_17775 PF00005 ABC transporter HPY09_17780 PF00664 ABC transporter transmembrane region HPY09_17780 PF00005 ABC transporter HPY09_17790 PF00072 Response regulator receiver domain HPY09_17790 PF09308 LuxQ, periplasmic HPY09_17790 PF00512 His Kinase A (phospho-acceptor) domain HPY09_17790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_17795 PF13407 Periplasmic binding protein domain HPY09_17805 PF01541 GIY-YIG catalytic domain HPY09_17810 PF04337 Protein of unknown function, DUF480 HPY09_17820 PF04363 Protein of unknown function (DUF496) HPY09_17830 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HPY09_17830 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HPY09_17835 PF00230 Major intrinsic protein HPY09_17840 PF04324 BFD-like [2Fe-2S] binding domain HPY09_17840 PF01266 FAD dependent oxidoreductase HPY09_17845 PF00890 FAD binding domain HPY09_17850 PF02754 Cysteine-rich domain HPY09_17850 PF13183 4Fe-4S dicluster domain HPY09_17855 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HPY09_17855 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HPY09_17860 PF00085 Thioredoxin HPY09_17865 PF07690 Major Facilitator Superfamily HPY09_17885 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_17890 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_17895 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY09_17900 PF00005 ABC transporter HPY09_17910 PF05762 VWA domain containing CoxE-like protein HPY09_17915 PF07728 AAA domain (dynein-related subfamily) HPY09_17915 PF17868 AAA lid domain HPY09_17915 PF12592 Protein of unknown function (DUF3763) HPY09_17920 PF00293 NUDIX domain HPY09_17925 PF01212 Beta-eliminating lyase HPY09_17930 PF00034 Cytochrome c HPY09_17935 PF00440 Bacterial regulatory proteins, tetR family HPY09_17935 PF08361 MAATS-type transcriptional repressor, C-terminal region HPY09_17940 PF00271 Helicase conserved C-terminal domain HPY09_17940 PF00270 DEAD/DEAH box helicase HPY09_17945 PF04336 Acyl carrier protein phosphodiesterase HPY09_17950 PF03222 Tryptophan/tyrosine permease family HPY09_17955 PF12729 Four helix bundle sensory module for signal transduction HPY09_17955 PF00672 HAMP domain HPY09_17955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_17960 PF16363 GDP-mannose 4,6 dehydratase HPY09_17965 PF03746 LamB/YcsF family HPY09_17975 PF02626 Carboxyltransferase domain, subdomain A and B HPY09_17985 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HPY09_17985 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HPY09_17995 PF00005 ABC transporter HPY09_18000 PF13472 GDSL-like Lipase/Acylhydrolase family HPY09_18005 PF12241 Trans-2-enoyl-CoA reductase catalytic region HPY09_18005 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HPY09_18005 PF07055 Enoyl reductase FAD binding domain HPY09_18010 PF00563 EAL domain HPY09_18010 PF00990 Diguanylate cyclase, GGDEF domain HPY09_18010 PF00498 FHA domain HPY09_18020 PF00226 DnaJ domain HPY09_18020 PF01556 DnaJ C terminal domain HPY09_18020 PF00684 DnaJ central domain HPY09_18035 PF13419 Haloacid dehalogenase-like hydrolase HPY09_18050 PF00294 pfkB family carbohydrate kinase HPY09_18055 PF00884 Sulfatase HPY09_18065 PF00271 Helicase conserved C-terminal domain HPY09_18065 PF03880 DbpA RNA binding domain HPY09_18065 PF00270 DEAD/DEAH box helicase HPY09_18070 PF00575 S1 RNA binding domain HPY09_18070 PF00773 RNB domain HPY09_18070 PF08206 Ribonuclease B OB domain HPY09_18080 PF12849 PBP superfamily domain HPY09_18085 PF01575 MaoC like domain HPY09_18090 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HPY09_18095 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HPY09_18095 PF18416 N-acetylglucosamine binding protein domain 2 HPY09_18100 PF03413 Peptidase propeptide and YPEB domain HPY09_18100 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY09_18100 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY09_18100 PF04151 Bacterial pre-peptidase C-terminal domain HPY09_18100 PF01447 Thermolysin metallopeptidase, catalytic domain HPY09_18105 PF04389 Peptidase family M28 HPY09_18105 PF04151 Bacterial pre-peptidase C-terminal domain HPY09_18110 PF00491 Arginase family HPY09_18115 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HPY09_18115 PF17944 Arginine decarboxylase C-terminal helical extension HPY09_18115 PF17810 Arginine decarboxylase helical bundle domain HPY09_18125 PF00571 CBS domain HPY09_18125 PF01769 Divalent cation transporter HPY09_18125 PF03448 MgtE intracellular N domain HPY09_18130 PF00166 Chaperonin 10 Kd subunit HPY09_18135 PF00118 TCP-1/cpn60 chaperonin family HPY09_18145 PF13840 ACT domain HPY09_18145 PF00696 Amino acid kinase family HPY09_18150 PF06339 Ectoine synthase HPY09_18155 PF00202 Aminotransferase class-III HPY09_18160 PF00583 Acetyltransferase (GNAT) family HPY09_18165 PF01329 Pterin 4 alpha carbinolamine dehydratase HPY09_18170 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HPY09_18175 PF13193 AMP-binding enzyme C-terminal domain HPY09_18175 PF00501 AMP-binding enzyme HPY09_18195 PF03466 LysR substrate binding domain HPY09_18195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_18205 PF00892 EamA-like transporter family HPY09_18210 PF00132 Bacterial transferase hexapeptide (six repeats) HPY09_18210 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal HPY09_18210 PF14602 Hexapeptide repeat of succinyl-transferase HPY09_18215 PF01595 Cyclin M transmembrane N-terminal domain HPY09_18215 PF03471 Transporter associated domain HPY09_18215 PF00571 CBS domain HPY09_18220 PF02566 OsmC-like protein HPY09_18225 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HPY09_18230 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HPY09_18230 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPY09_18250 PF07992 Pyridine nucleotide-disulphide oxidoreductase HPY09_18255 PF13520 Amino acid permease HPY09_18260 PF00990 Diguanylate cyclase, GGDEF domain HPY09_18270 PF04397 LytTr DNA-binding domain HPY09_18270 PF00072 Response regulator receiver domain HPY09_18275 PF06580 Histidine kinase HPY09_18275 PF07694 5TMR of 5TMR-LYT HPY09_18275 PF13492 GAF domain HPY09_18275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_18290 PF02687 FtsX-like permease family HPY09_18290 PF12704 MacB-like periplasmic core domain HPY09_18290 PF00005 ABC transporter HPY09_18295 PF00005 ABC transporter HPY09_18305 PF00248 Aldo/keto reductase family HPY09_18310 PF00128 Alpha amylase, catalytic domain HPY09_18320 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HPY09_18325 PF12262 Bacterial virulence factor lipase N-terminal HPY09_18330 PF13426 PAS domain HPY09_18330 PF08447 PAS fold HPY09_18330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_18335 PF01447 Thermolysin metallopeptidase, catalytic domain HPY09_18335 PF03413 Peptidase propeptide and YPEB domain HPY09_18335 PF02868 Thermolysin metallopeptidase, alpha-helical domain HPY09_18335 PF07504 Fungalysin/Thermolysin Propeptide Motif HPY09_18335 PF04151 Bacterial pre-peptidase C-terminal domain HPY09_18340 PF03922 OmpW family HPY09_18350 PF00768 D-alanyl-D-alanine carboxypeptidase HPY09_18360 PF00313 'Cold-shock' DNA-binding domain HPY09_18370 PF00291 Pyridoxal-phosphate dependent enzyme HPY09_18390 PF01979 Amidohydrolase family HPY09_18405 PF00512 His Kinase A (phospho-acceptor) domain HPY09_18405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_18405 PF00672 HAMP domain HPY09_18405 PF00989 PAS fold HPY09_18410 PF00072 Response regulator receiver domain HPY09_18410 PF00486 Transcriptional regulatory protein, C terminal HPY09_18425 PF00589 Phage integrase family HPY09_18425 PF12167 Arm DNA-binding domain HPY09_18440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_18440 PF03466 LysR substrate binding domain HPY09_18445 PF08240 Alcohol dehydrogenase GroES-like domain HPY09_18445 PF00107 Zinc-binding dehydrogenase HPY09_18450 PF00155 Aminotransferase class I and II HPY09_18465 PF03466 LysR substrate binding domain HPY09_18465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_18470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HPY09_18495 PF01966 HD domain HPY09_18500 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HPY09_18500 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HPY09_18510 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HPY09_18510 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HPY09_18535 PF02595 Glycerate kinase family HPY09_18540 PF02447 GntP family permease HPY09_18545 PF17853 GGDEF-like domain HPY09_18545 PF13556 PucR C-terminal helix-turn-helix domain HPY09_18545 PF05651 Putative sugar diacid recognition HPY09_18550 PF00672 HAMP domain HPY09_18550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_18555 PF01243 Pyridoxamine 5'-phosphate oxidase HPY09_18560 PF06228 Haem utilisation ChuX/HutX HPY09_18565 PF04055 Radical SAM superfamily HPY09_18570 PF03544 Gram-negative bacterial TonB protein C-terminal HPY09_18575 PF01618 MotA/TolQ/ExbB proton channel family HPY09_18580 PF02472 Biopolymer transport protein ExbD/TolR HPY09_18585 PF01497 Periplasmic binding protein HPY09_18590 PF01032 FecCD transport family HPY09_18595 PF00005 ABC transporter HPY09_18625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_18625 PF02743 Cache domain HPY09_18625 PF00672 HAMP domain HPY09_18630 PF03473 MOSC domain HPY09_18630 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY09_18630 PF03476 MOSC N-terminal beta barrel domain HPY09_18630 PF03473 MOSC domain HPY09_18630 PF00111 2Fe-2S iron-sulfur cluster binding domain HPY09_18630 PF03476 MOSC N-terminal beta barrel domain HPY09_18635 PF01979 Amidohydrolase family HPY09_18640 PF05958 tRNA (Uracil-5-)-methyltransferase HPY09_18645 PF05661 Protein of unknown function (DUF808) HPY09_18650 PF00990 Diguanylate cyclase, GGDEF domain HPY09_18650 PF17151 Periplasmic sensor domain HPY09_18660 PF00313 'Cold-shock' DNA-binding domain HPY09_18685 PF00990 Diguanylate cyclase, GGDEF domain HPY09_18685 PF08448 PAS fold HPY09_18690 PF00455 DeoR C terminal sensor domain HPY09_18690 PF08220 DeoR-like helix-turn-helix domain HPY09_18705 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_18710 PF14785 Maltose transport system permease protein MalF P2 domain HPY09_18710 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_18715 PF01547 Bacterial extracellular solute-binding protein HPY09_18720 PF00005 ABC transporter HPY09_18720 PF08402 TOBE domain HPY09_18725 PF13302 Acetyltransferase (GNAT) domain HPY09_18740 PF01906 Putative heavy-metal-binding HPY09_18745 PF00196 Bacterial regulatory proteins, luxR family HPY09_18755 PF00072 Response regulator receiver domain HPY09_18755 PF01584 CheW-like domain HPY09_18760 PF01047 MarR family HPY09_18765 PF00990 Diguanylate cyclase, GGDEF domain HPY09_18780 PF03707 Bacterial signalling protein N terminal repeat HPY09_18780 PF00990 Diguanylate cyclase, GGDEF domain HPY09_18780 PF00563 EAL domain HPY09_18800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_18800 PF03466 LysR substrate binding domain HPY09_18805 PF00563 EAL domain HPY09_18805 PF00990 Diguanylate cyclase, GGDEF domain HPY09_18815 PF02678 Pirin HPY09_18815 PF05726 Pirin C-terminal cupin domain HPY09_18820 PF06865 Pyrimidine/purine nucleoside phosphorylase HPY09_18830 PF07690 Major Facilitator Superfamily HPY09_18835 PF17200 Single Cache domain 2 HPY09_18835 PF00672 HAMP domain HPY09_18835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_18840 PF05362 Lon protease (S16) C-terminal proteolytic domain HPY09_18840 PF13654 AAA domain HPY09_18850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY09_18850 PF00005 ABC transporter HPY09_18855 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY09_18860 PF17200 Single Cache domain 2 HPY09_18860 PF00672 HAMP domain HPY09_18860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_18870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_18870 PF03466 LysR substrate binding domain HPY09_18880 PF02652 L-lactate permease HPY09_18885 PF01070 FMN-dependent dehydrogenase HPY09_18895 PF03618 Kinase/pyrophosphorylase HPY09_18900 PF00391 PEP-utilising enzyme, mobile domain HPY09_18900 PF02896 PEP-utilising enzyme, TIM barrel domain HPY09_18900 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HPY09_18905 PF08447 PAS fold HPY09_18905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_18910 PF01554 MatE HPY09_18925 PF03475 3-alpha domain HPY09_18925 PF03473 MOSC domain HPY09_18930 PF00270 DEAD/DEAH box helicase HPY09_18930 PF00271 Helicase conserved C-terminal domain HPY09_18940 PF00664 ABC transporter transmembrane region HPY09_18940 PF00005 ABC transporter HPY09_18950 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HPY09_18960 PF01810 LysE type translocator HPY09_18965 PF12833 Helix-turn-helix domain HPY09_18980 PF01557 Fumarylacetoacetate (FAA) hydrolase family HPY09_18985 PF01047 MarR family HPY09_18990 PF02566 OsmC-like protein HPY09_18995 PF13609 Gram-negative porin HPY09_19000 PF00892 EamA-like transporter family HPY09_19005 PF00462 Glutaredoxin HPY09_19010 PF07670 Nucleoside recognition HPY09_19015 PF07670 Nucleoside recognition HPY09_19020 PF03600 Citrate transporter HPY09_19030 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HPY09_19030 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HPY09_19035 PF00730 HhH-GPD superfamily base excision DNA repair protein HPY09_19035 PF06029 AlkA N-terminal domain HPY09_19040 PF07681 DoxX HPY09_19045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_19045 PF03466 LysR substrate binding domain HPY09_19065 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HPY09_19075 PF07148 Maltose operon periplasmic protein precursor (MalM) HPY09_19080 PF02264 LamB porin HPY09_19085 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HPY09_19085 PF00128 Alpha amylase, catalytic domain HPY09_19095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_19095 PF00672 HAMP domain HPY09_19095 PF12729 Four helix bundle sensory module for signal transduction HPY09_19110 PF00672 HAMP domain HPY09_19110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_19115 PF00563 EAL domain HPY09_19115 PF00990 Diguanylate cyclase, GGDEF domain HPY09_19125 PF00793 DAHP synthetase I family HPY09_19130 PF00005 ABC transporter HPY09_19135 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_19140 PF00497 Bacterial extracellular solute-binding proteins, family 3 HPY09_19145 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_19150 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HPY09_19150 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HPY09_19150 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HPY09_19150 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HPY09_19155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HPY09_19155 PF02378 Phosphotransferase system, EIIC HPY09_19155 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HPY09_19160 PF01232 Mannitol dehydrogenase Rossmann domain HPY09_19160 PF08125 Mannitol dehydrogenase C-terminal domain HPY09_19165 PF05068 Mannitol repressor HPY09_19170 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HPY09_19200 PF13460 NAD(P)H-binding HPY09_19205 PF03466 LysR substrate binding domain HPY09_19205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_19210 PF02743 Cache domain HPY09_19210 PF00672 HAMP domain HPY09_19210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_19215 PF00106 short chain dehydrogenase HPY09_19220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HPY09_19220 PF03466 LysR substrate binding domain HPY09_19225 PF04013 Putative SAM-dependent RNA methyltransferase HPY09_19230 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HPY09_19240 PF13520 Amino acid permease HPY09_19245 PF01276 Orn/Lys/Arg decarboxylase, major domain HPY09_19245 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HPY09_19245 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HPY09_19255 PF03472 Autoinducer binding domain HPY09_19255 PF00196 Bacterial regulatory proteins, luxR family HPY09_19275 PF00171 Aldehyde dehydrogenase family HPY09_19280 PF01037 Lrp/AsnC ligand binding domain HPY09_19285 PF02743 Cache domain HPY09_19285 PF00672 HAMP domain HPY09_19285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_19295 PF00474 Sodium:solute symporter family HPY09_19310 PF12833 Helix-turn-helix domain HPY09_19320 PF03781 Sulfatase-modifying factor enzyme 1 HPY09_19325 PF00196 Bacterial regulatory proteins, luxR family HPY09_19325 PF00072 Response regulator receiver domain HPY09_19330 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HPY09_19330 PF01243 Pyridoxamine 5'-phosphate oxidase HPY09_19335 PF00529 HlyD membrane-fusion protein of T1SS HPY09_19350 PF00664 ABC transporter transmembrane region HPY09_19350 PF00005 ABC transporter HPY09_19350 PF03412 Peptidase C39 family HPY09_19360 PF00072 Response regulator receiver domain HPY09_19360 PF00990 Diguanylate cyclase, GGDEF domain HPY09_19370 PF00672 HAMP domain HPY09_19370 PF02743 Cache domain HPY09_19370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_19375 PF00072 Response regulator receiver domain HPY09_19375 PF01339 CheB methylesterase HPY09_19380 PF03975 CheD chemotactic sensory transduction HPY09_19385 PF01739 CheR methyltransferase, SAM binding domain HPY09_19385 PF03705 CheR methyltransferase, all-alpha domain HPY09_19390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_19390 PF00672 HAMP domain HPY09_19390 PF02203 Tar ligand binding domain homologue HPY09_19395 PF01584 CheW-like domain HPY09_19400 PF01584 CheW-like domain HPY09_19405 PF01627 Hpt domain HPY09_19405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_19405 PF02895 Signal transducing histidine kinase, homodimeric domain HPY09_19405 PF09078 CheY binding HPY09_19405 PF01584 CheW-like domain HPY09_19410 PF00072 Response regulator receiver domain HPY09_19420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HPY09_19425 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_19430 PF00528 Binding-protein-dependent transport system inner membrane component HPY09_19430 PF12911 N-terminal TM domain of oligopeptide transport permease C HPY09_19435 PF00005 ABC transporter HPY09_19435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HPY09_19440 PF08019 Phosphoethanolamine transferase EptA/EptB HPY09_19440 PF00884 Sulfatase HPY09_19445 PF08521 Two-component sensor kinase N-terminal HPY09_19445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPY09_19445 PF00512 His Kinase A (phospho-acceptor) domain HPY09_19450 PF00486 Transcriptional regulatory protein, C terminal HPY09_19450 PF00072 Response regulator receiver domain HPY09_19460 PF00106 short chain dehydrogenase HPY09_19470 PF00501 AMP-binding enzyme HPY09_19480 PF05127 Helicase HPY09_19480 PF13718 GNAT acetyltransferase 2 HPY09_19485 PF13416 Bacterial extracellular solute-binding protein HPY09_19590 PF00216 Bacterial DNA-binding protein HPY09_19595 PF07516 SecA Wing and Scaffold domain HPY09_19595 PF01043 SecA preprotein cross-linking domain HPY09_19595 PF02810 SEC-C motif HPY09_19595 PF07517 SecA DEAD-like domain HPY09_19625 PF00216 Bacterial DNA-binding protein HPY09_19715 PF00817 impB/mucB/samB family HPY09_19715 PF13438 Domain of unknown function (DUF4113) HPY09_19715 PF11799 impB/mucB/samB family C-terminal domain HPY09_19720 PF00717 Peptidase S24-like HPY09_19725 PF00589 Phage integrase family HPY09_19735 PF00154 recA bacterial DNA recombination protein HPY09_19740 PF03738 Glutathionylspermidine synthase preATP-grasp HPY09_19760 PF04012 PspA/IM30 family HPY09_19775 PF02086 D12 class N6 adenine-specific DNA methyltransferase HPY09_19780 PF01526 Tn3 transposase DDE domain HPY09_19780 PF13700 Domain of unknown function (DUF4158) HPY09_19795 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HPY09_19805 PF00239 Resolvase, N terminal domain HPY09_19805 PF02796 Helix-turn-helix domain of resolvase HPY09_19930 PF00816 H-NS histone family HPY09_19940 PF01320 Colicin immunity protein / pyocin immunity protein HPY09_20020 PF18273 Type III R-M EcoP15I C-terminal domain HPY09_20020 PF01555 DNA methylase HPY09_20025 PF08774 VRR-NUC domain HPY09_20025 PF04851 Type III restriction enzyme, res subunit HPY09_20045 PF02743 Cache domain HPY09_20045 PF00672 HAMP domain HPY09_20045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HPY09_20050 PF00563 EAL domain HPY09_20050 PF00990 Diguanylate cyclase, GGDEF domain HPY09_20050 PF03707 Bacterial signalling protein N terminal repeat HPY09_20210 PF06965 Na+/H+ antiporter 1 HPY09_20210 PF01343 Peptidase family S49 HPY09_20370 PF01609 Transposase DDE domain HPY09_20370 PF02281 Transposase Tn5 dimerisation domain HPY09_20370 PF14706 Transposase DNA-binding HPY09_20405 PF06733 DEAD_2 HPY09_20405 PF13307 Helicase C-terminal domain HPY09_20445 PF00580 UvrD/REP helicase N-terminal domain HPY09_20445 PF13361 UvrD-like helicase C-terminal domain HPY09_20480 PF02768 DNA polymerase III beta subunit, C-terminal domain HPY09_20480 PF02767 DNA polymerase III beta subunit, central domain HPY09_20480 PF00712 DNA polymerase III beta subunit, N-terminal domain HPY09_20490 PF01051 Initiator Replication protein HPY09_20495 PF00593 TonB dependent receptor HPY09_20495 PF07715 TonB-dependent Receptor Plug Domain HPY09_20575 PF00795 Carbon-nitrogen hydrolase HPY09_20650 PF00533 BRCA1 C Terminus (BRCT) domain HPY09_20650 PF03120 NAD-dependent DNA ligase OB-fold domain HPY09_20650 PF01653 NAD-dependent DNA ligase adenylation domain HPY09_20665 PF10502 Signal peptidase, peptidase S26 HPY09_20690 PF00109 Beta-ketoacyl synthase, N-terminal domain HPY09_20690 PF02801 Beta-ketoacyl synthase, C-terminal domain HPY09_20795 PF17762 HTH domain found in ParB protein HPY09_20795 PF02195 ParB-like nuclease domain HPY09_20890 PF00216 Bacterial DNA-binding protein HPY09_20915 PF06986 Type-1V conjugative transfer system mating pair stabilisation HPY09_20935 PF13361 UvrD-like helicase C-terminal domain HPY09_20935 PF00580 UvrD/REP helicase N-terminal domain HPY09_21005 PF00929 Exonuclease