locus-tag class description BA953_00005 PF03989 DNA gyrase C-terminal domain, beta-propeller BA953_00005 PF00521 DNA gyrase/topoisomerase IV, subunit A BA953_00010 PF00672 HAMP domain BA953_00010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_00015 PF11230 Protein of unknown function (DUF3029) BA953_00020 PF04055 Radical SAM superfamily BA953_00050 PF01259 SAICAR synthetase BA953_00065 PF00753 Metallo-beta-lactamase superfamily BA953_00070 PF00072 Response regulator receiver domain BA953_00070 PF00486 Transcriptional regulatory protein, C terminal BA953_00075 PF16527 Two-component sensor protein CpxA, periplasmic domain BA953_00075 PF00672 HAMP domain BA953_00075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_00075 PF00512 His Kinase A (phospho-acceptor) domain BA953_00080 PF07715 TonB-dependent Receptor Plug Domain BA953_00080 PF00593 TonB dependent receptor BA953_00090 PF01618 MotA/TolQ/ExbB proton channel family BA953_00095 PF01618 MotA/TolQ/ExbB proton channel family BA953_00100 PF02472 Biopolymer transport protein ExbD/TolR BA953_00105 PF03544 Gram-negative bacterial TonB protein C-terminal BA953_00120 PF17203 Single cache domain 3 BA953_00120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_00120 PF00989 PAS fold BA953_00120 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BA953_00125 PF12431 Transcriptional regulator BA953_00125 PF00072 Response regulator receiver domain BA953_00145 PF00990 Diguanylate cyclase, GGDEF domain BA953_00145 PF17151 Periplasmic sensor domain BA953_00150 PF08447 PAS fold BA953_00150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_00155 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BA953_00155 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BA953_00155 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA953_00155 PF18267 Rubredoxin NAD+ reductase C-terminal domain BA953_00155 PF04324 BFD-like [2Fe-2S] binding domain BA953_00160 PF13806 Rieske-like [2Fe-2S] domain BA953_00165 PF01226 Formate/nitrite transporter BA953_00170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BA953_00170 PF10414 Sirohaem synthase dimerisation region BA953_00170 PF14824 Sirohaem biosynthesis protein central BA953_00185 PF00174 Oxidoreductase molybdopterin binding domain BA953_00190 PF01794 Ferric reductase like transmembrane component BA953_00200 PF01278 Omptin family BA953_00205 PF03466 LysR substrate binding domain BA953_00205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_00215 PF00072 Response regulator receiver domain BA953_00215 PF00486 Transcriptional regulatory protein, C terminal BA953_00220 PF00672 HAMP domain BA953_00220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_00220 PF00512 His Kinase A (phospho-acceptor) domain BA953_00225 PF06629 MltA-interacting protein MipA BA953_00230 PF04393 Protein of unknown function (DUF535) BA953_00235 PF00392 Bacterial regulatory proteins, gntR family BA953_00235 PF07729 FCD domain BA953_00240 PF07687 Peptidase dimerisation domain BA953_00240 PF01546 Peptidase family M20/M25/M40 BA953_00245 PF03606 C4-dicarboxylate anaerobic carrier BA953_00255 PF07690 Major Facilitator Superfamily BA953_00260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_00260 PF03466 LysR substrate binding domain BA953_00265 PF17853 GGDEF-like domain BA953_00265 PF13556 PucR C-terminal helix-turn-helix domain BA953_00265 PF05651 Putative sugar diacid recognition BA953_00270 PF02595 Glycerate kinase family BA953_00275 PF01648 4'-phosphopantetheinyl transferase superfamily BA953_00275 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BA953_00280 PF00005 ABC transporter BA953_00285 PF01497 Periplasmic binding protein BA953_00290 PF01032 FecCD transport family BA953_00295 PF00005 ABC transporter BA953_00300 PF03621 MbtH-like protein BA953_00305 PF00550 Phosphopantetheine attachment site BA953_00305 PF00501 AMP-binding enzyme BA953_00305 PF13193 AMP-binding enzyme C-terminal domain BA953_00305 PF00668 Condensation domain BA953_00310 PF00501 AMP-binding enzyme BA953_00310 PF00668 Condensation domain BA953_00310 PF00550 Phosphopantetheine attachment site BA953_00310 PF13193 AMP-binding enzyme C-terminal domain BA953_00315 PF07715 TonB-dependent Receptor Plug Domain BA953_00315 PF00593 TonB dependent receptor BA953_00325 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BA953_00350 PF02397 Bacterial sugar transferase BA953_00360 PF13439 Glycosyltransferase Family 4 BA953_00360 PF00534 Glycosyl transferases group 1 BA953_00390 PF00862 Sucrose synthase BA953_00390 PF00534 Glycosyl transferases group 1 BA953_00395 PF00534 Glycosyl transferases group 1 BA953_00395 PF13439 Glycosyltransferase Family 4 BA953_00405 PF02954 Bacterial regulatory protein, Fis family BA953_00405 PF00158 Sigma-54 interaction domain BA953_00405 PF00072 Response regulator receiver domain BA953_00410 PF00672 HAMP domain BA953_00410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_00410 PF00512 His Kinase A (phospho-acceptor) domain BA953_00410 PF01627 Hpt domain BA953_00410 PF00072 Response regulator receiver domain BA953_00410 PF17149 Periplasmic sensor domain found in signal transduction proteins BA953_00450 PF01554 MatE BA953_00455 PF00677 Lumazine binding domain BA953_00475 PF00877 NlpC/P60 family BA953_00480 PF12729 Four helix bundle sensory module for signal transduction BA953_00480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_00480 PF00672 HAMP domain BA953_00495 PF00480 ROK family BA953_00510 PF03454 MoeA C-terminal region (domain IV) BA953_00510 PF03453 MoeA N-terminal region (domain I and II) BA953_00510 PF00994 Probable molybdopterin binding domain BA953_00515 PF12804 MobA-like NTP transferase domain BA953_00520 PF00005 ABC transporter BA953_00520 PF08402 TOBE domain BA953_00525 PF00528 Binding-protein-dependent transport system inner membrane component BA953_00530 PF12849 PBP superfamily domain BA953_00535 PF00072 Response regulator receiver domain BA953_00535 PF00158 Sigma-54 interaction domain BA953_00535 PF02954 Bacterial regulatory protein, Fis family BA953_00540 PF00512 His Kinase A (phospho-acceptor) domain BA953_00540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_00540 PF00989 PAS fold BA953_00555 PF08281 Sigma-70, region 4 BA953_00555 PF04542 Sigma-70 region 2 BA953_00565 PF12848 ABC transporter BA953_00565 PF00005 ABC transporter BA953_00590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_00590 PF00529 HlyD membrane-fusion protein of T1SS BA953_00595 PF00873 AcrB/AcrD/AcrF family BA953_00600 PF00486 Transcriptional regulatory protein, C terminal BA953_00605 PF01645 Conserved region in glutamate synthase BA953_00625 PF03591 AzlC protein BA953_00630 PF03466 LysR substrate binding domain BA953_00630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_00635 PF01551 Peptidase family M23 BA953_00660 PF01292 Prokaryotic cytochrome b561 BA953_00665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_00665 PF00672 HAMP domain BA953_00665 PF02743 Cache domain BA953_00670 PF02634 FdhD/NarQ family BA953_00700 PF01568 Molydopterin dinucleotide binding domain BA953_00700 PF00384 Molybdopterin oxidoreductase BA953_00700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BA953_00705 PF13247 4Fe-4S dicluster domain BA953_00720 PF00909 Ammonium Transporter Family BA953_00725 PF02146 Sir2 family BA953_00730 PF00990 Diguanylate cyclase, GGDEF domain BA953_00730 PF17155 Gammaproteobacterial periplasmic sensor domain BA953_00735 PF13416 Bacterial extracellular solute-binding protein BA953_00740 PF13416 Bacterial extracellular solute-binding protein BA953_00745 PF00528 Binding-protein-dependent transport system inner membrane component BA953_00750 PF00528 Binding-protein-dependent transport system inner membrane component BA953_00755 PF00005 ABC transporter BA953_00755 PF08402 TOBE domain BA953_00775 PF01171 PP-loop family BA953_00795 PF05638 Type VI secretion system effector, Hcp BA953_00815 PF16671 Actin cross-linking domain BA953_00815 PF04717 Type VI secretion system, phage-baseplate injector BA953_00875 PF00582 Universal stress protein family BA953_00880 PF13545 Crp-like helix-turn-helix domain BA953_00880 PF00027 Cyclic nucleotide-binding domain BA953_00895 PF00403 Heavy-metal-associated domain BA953_00905 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP BA953_00905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BA953_00920 PF00115 Cytochrome C and Quinol oxidase polypeptide I BA953_00935 PF07968 Leukocidin/Hemolysin toxin family BA953_00935 PF12563 Hemolytic toxin N terminal BA953_00935 PF16458 Beta-prism lectin BA953_00940 PF00813 FliP family BA953_00945 PF01313 Bacterial export proteins, family 3 BA953_00950 PF01311 Bacterial export proteins, family 1 BA953_00955 PF01312 FlhB HrpN YscU SpaS Family BA953_00960 PF00072 Response regulator receiver domain BA953_00960 PF00196 Bacterial regulatory proteins, luxR family BA953_00970 PF01627 Hpt domain BA953_00970 PF00672 HAMP domain BA953_00970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_00970 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BA953_00970 PF00512 His Kinase A (phospho-acceptor) domain BA953_00970 PF00072 Response regulator receiver domain BA953_01015 PF00005 ABC transporter BA953_01015 PF12399 Branched-chain amino acid ATP-binding cassette transporter BA953_01020 PF00005 ABC transporter BA953_01025 PF08241 Methyltransferase domain BA953_01025 PF12697 Alpha/beta hydrolase family BA953_01045 PF04888 Secretion system effector C (SseC) like family BA953_01070 PF00005 ABC transporter BA953_01070 PF00664 ABC transporter transmembrane region BA953_01075 PF00529 HlyD membrane-fusion protein of T1SS BA953_01095 PF00753 Metallo-beta-lactamase superfamily BA953_01095 PF16123 Hydroxyacylglutathione hydrolase C-terminus BA953_01105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_01105 PF03466 LysR substrate binding domain BA953_01120 PF01361 Tautomerase enzyme BA953_01135 PF03594 Benzoate membrane transport protein BA953_01140 PF01381 Helix-turn-helix BA953_01140 PF07883 Cupin domain BA953_01150 PF03150 Di-haem cytochrome c peroxidase BA953_01150 PF00034 Cytochrome c BA953_01155 PF12833 Helix-turn-helix domain BA953_01175 PF01514 Secretory protein of YscJ/FliF family BA953_01195 PF05932 Tir chaperone protein (CesT) family BA953_01210 PF00771 FHIPEP family BA953_01215 PF02874 ATP synthase alpha/beta family, beta-barrel domain BA953_01215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BA953_01215 PF18269 T3SS EscN ATPase C-terminal domain BA953_01235 PF11047 Salmonella outer protein D BA953_01250 PF07968 Leukocidin/Hemolysin toxin family BA953_01250 PF00652 Ricin-type beta-trefoil lectin domain BA953_01265 PF01565 FAD binding domain BA953_01265 PF04030 D-arabinono-1,4-lactone oxidase BA953_01275 PF12729 Four helix bundle sensory module for signal transduction BA953_01275 PF00672 HAMP domain BA953_01275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_01280 PF00842 Alanine racemase, C-terminal domain BA953_01280 PF01168 Alanine racemase, N-terminal domain BA953_01435 PF13286 Phosphohydrolase-associated domain BA953_01435 PF01966 HD domain BA953_01455 PF13411 MerR HTH family regulatory protein BA953_01490 PF01810 LysE type translocator BA953_01510 PF06303 MatP N-terminal domain BA953_01510 PF17414 MatP C-terminal ribbon-helix-helix domain BA953_01515 PF05362 Lon protease (S16) C-terminal proteolytic domain BA953_01515 PF13654 AAA domain BA953_01520 PF07977 FabA-like domain BA953_01525 PF04957 Ribosome modulation factor BA953_01535 PF12848 ABC transporter BA953_01535 PF00005 ABC transporter BA953_01535 PF16326 ABC transporter C-terminal domain BA953_01545 PF02926 THUMP domain BA953_01545 PF01170 Putative RNA methylase family UPF0020 BA953_01545 PF10672 S-adenosylmethionine-dependent methyltransferase BA953_01550 PF07126 Cell-division protein ZapC BA953_01555 PF01180 Dihydroorotate dehydrogenase BA953_01560 PF05088 Bacterial NAD-glutamate dehydrogenase BA953_01570 PF01433 Peptidase family M1 domain BA953_01570 PF11940 Domain of unknown function (DUF3458) Ig-like fold BA953_01570 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BA953_01580 PF03572 Peptidase family S41 BA953_01580 PF11818 C-terminal domain of tail specific protease (DUF3340) BA953_01580 PF00595 PDZ domain BA953_01580 PF17804 Tail specific protease N-terminal domain BA953_01585 PF04352 ProQ/FINO family BA953_01585 PF17516 ProQ C-terminal domain BA953_01590 PF13185 GAF domain BA953_01595 PF00005 ABC transporter BA953_01595 PF00664 ABC transporter transmembrane region BA953_01600 PF04403 Paraquat-inducible protein A BA953_01630 PF00391 PEP-utilising enzyme, mobile domain BA953_01630 PF02896 PEP-utilising enzyme, TIM barrel domain BA953_01630 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BA953_01635 PF00793 DAHP synthetase I family BA953_01640 PF04461 Protein of unknown function (DUF520) BA953_01645 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BA953_01645 PF14824 Sirohaem biosynthesis protein central BA953_01645 PF10414 Sirohaem synthase dimerisation region BA953_01650 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA953_01655 PF00528 Binding-protein-dependent transport system inner membrane component BA953_01660 PF00528 Binding-protein-dependent transport system inner membrane component BA953_01665 PF00005 ABC transporter BA953_01670 PF01027 Inhibitor of apoptosis-promoting Bax1 BA953_01675 PF04358 DsrC like protein BA953_01680 PF00708 Acylphosphatase BA953_01685 PF02743 Cache domain BA953_01685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_01685 PF00672 HAMP domain BA953_01690 PF17785 PUA-like domain BA953_01690 PF10672 S-adenosylmethionine-dependent methyltransferase BA953_01705 PF05736 OprF membrane domain BA953_01705 PF00691 OmpA family BA953_01715 PF06508 Queuosine biosynthesis protein QueC BA953_01720 PF04055 Radical SAM superfamily BA953_01745 PF04303 PrpF protein BA953_01750 PF00694 Aconitase C-terminal domain BA953_01750 PF00330 Aconitase family (aconitate hydratase) BA953_01755 PF00285 Citrate synthase, C-terminal domain BA953_01775 PF04717 Type VI secretion system, phage-baseplate injector BA953_01775 PF16671 Actin cross-linking domain BA953_01830 PF00004 ATPase family associated with various cellular activities (AAA) BA953_01830 PF07724 AAA domain (Cdc48 subfamily) BA953_01830 PF17871 AAA lid domain BA953_01830 PF10431 C-terminal, D2-small domain, of ClpB protein BA953_01875 PF00069 Protein kinase domain BA953_01895 PF01970 Tripartite tricarboxylate transporter TctA family BA953_01905 PF13533 Biotin-lipoyl like BA953_01920 PF00563 EAL domain BA953_01920 PF12792 CSS motif domain associated with EAL BA953_01940 PF00561 alpha/beta hydrolase fold BA953_01940 PF00364 Biotin-requiring enzyme BA953_01955 PF05971 RNA methyltransferase BA953_01960 PF01863 Protein of unknown function DUF45 BA953_01970 PF00512 His Kinase A (phospho-acceptor) domain BA953_01970 PF09308 LuxQ, periplasmic BA953_01970 PF00072 Response regulator receiver domain BA953_01970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_01980 PF00005 ABC transporter BA953_01985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_01985 PF03466 LysR substrate binding domain BA953_01990 PF07690 Major Facilitator Superfamily BA953_02000 PF13185 GAF domain BA953_02000 PF00990 Diguanylate cyclase, GGDEF domain BA953_02020 PF01032 FecCD transport family BA953_02025 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BA953_02035 PF00300 Histidine phosphatase superfamily (branch 1) BA953_02040 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BA953_02045 PF02654 Cobalamin-5-phosphate synthase BA953_02055 PF01613 Flavin reductase like domain BA953_02060 PF13460 NAD(P)H-binding BA953_02070 PF00929 Exonuclease BA953_02070 PF08411 Exonuclease C-terminal BA953_02075 PF03788 LrgA family BA953_02080 PF04172 LrgB-like family BA953_02090 PF01966 HD domain BA953_02090 PF11871 Domain of unknown function (DUF3391) BA953_02100 PF05724 Thiopurine S-methyltransferase (TPMT) BA953_02120 PF07070 SpoOM protein BA953_02125 PF07702 UTRA domain BA953_02125 PF00392 Bacterial regulatory proteins, gntR family BA953_02130 PF01979 Amidohydrolase family BA953_02135 PF00491 Arginase family BA953_02140 PF17392 Urocanase C-terminal domain BA953_02140 PF01175 Urocanase Rossmann-like domain BA953_02140 PF17391 Urocanase N-terminal domain BA953_02145 PF00221 Aromatic amino acid lyase BA953_02155 PF04191 Phospholipid methyltransferase BA953_02160 PF13183 4Fe-4S dicluster domain BA953_02160 PF02913 FAD linked oxidases, C-terminal domain BA953_02160 PF01565 FAD binding domain BA953_02175 PF13488 Glycine zipper BA953_02175 PF00691 OmpA family BA953_02190 PF02798 Glutathione S-transferase, N-terminal domain BA953_02190 PF14497 Glutathione S-transferase, C-terminal domain BA953_02200 PF04209 homogentisate 1,2-dioxygenase BA953_02205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA953_02210 PF07687 Peptidase dimerisation domain BA953_02210 PF01546 Peptidase family M20/M25/M40 BA953_02220 PF01810 LysE type translocator BA953_02230 PF13419 Haloacid dehalogenase-like hydrolase BA953_02235 PF12804 MobA-like NTP transferase domain BA953_02235 PF00132 Bacterial transferase hexapeptide (six repeats) BA953_02250 PF00583 Acetyltransferase (GNAT) family BA953_02275 PF13302 Acetyltransferase (GNAT) domain BA953_02280 PF13673 Acetyltransferase (GNAT) domain BA953_02335 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) BA953_02375 PF08274 PhnA Zinc-Ribbon BA953_02375 PF03831 PhnA domain BA953_02400 PF01925 Sulfite exporter TauE/SafE BA953_02410 PF01717 Cobalamin-independent synthase, Catalytic domain BA953_02410 PF08267 Cobalamin-independent synthase, N-terminal domain BA953_02420 PF00583 Acetyltransferase (GNAT) family BA953_02435 PF09905 DNA-binding protein VF530 BA953_02460 PF13419 Haloacid dehalogenase-like hydrolase BA953_02470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BA953_02515 PF04229 GrpB protein BA953_02525 PF01527 Transposase BA953_02530 PF13276 HTH-like domain BA953_02530 PF13333 Integrase core domain BA953_02530 PF00665 Integrase core domain BA953_02545 PF05016 ParE toxin of type II toxin-antitoxin system, parDE BA953_02630 PF00892 EamA-like transporter family BA953_02635 PF13520 Amino acid permease BA953_02645 PF00210 Ferritin-like domain BA953_02650 PF01734 Patatin-like phospholipase BA953_02655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_02655 PF00672 HAMP domain BA953_02655 PF02743 Cache domain BA953_02665 PF00196 Bacterial regulatory proteins, luxR family BA953_02665 PF00072 Response regulator receiver domain BA953_02670 PF17200 Single Cache domain 2 BA953_02670 PF07730 Histidine kinase BA953_02675 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA953_02685 PF03480 Bacterial extracellular solute-binding protein, family 7 BA953_02700 PF00753 Metallo-beta-lactamase superfamily BA953_02705 PF05951 Bacterial protein of unknown function (DUF882) BA953_02710 PF01471 Putative peptidoglycan binding domain BA953_02710 PF03734 L,D-transpeptidase catalytic domain BA953_02735 PF00925 GTP cyclohydrolase II BA953_02760 PF13302 Acetyltransferase (GNAT) domain BA953_02765 PF18024 Helix-turn-helix domain BA953_02765 PF00158 Sigma-54 interaction domain BA953_02770 PF05128 Domain of unknown function (DUF697) BA953_02775 PF04317 YcjX-like family, DUF463 BA953_02790 PF00425 chorismate binding enzyme BA953_02790 PF04715 Anthranilate synthase component I, N terminal region BA953_02795 PF09308 LuxQ, periplasmic BA953_02795 PF00072 Response regulator receiver domain BA953_02795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_02795 PF00512 His Kinase A (phospho-acceptor) domain BA953_02805 PF00293 NUDIX domain BA953_02810 PF03222 Tryptophan/tyrosine permease family BA953_02815 PF03315 Serine dehydratase beta chain BA953_02815 PF03313 Serine dehydratase alpha chain BA953_02820 PF03707 Bacterial signalling protein N terminal repeat BA953_02820 PF00990 Diguanylate cyclase, GGDEF domain BA953_02820 PF00563 EAL domain BA953_02825 PF03222 Tryptophan/tyrosine permease family BA953_02835 PF12729 Four helix bundle sensory module for signal transduction BA953_02835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_02835 PF00672 HAMP domain BA953_02840 PF01336 OB-fold nucleic acid binding domain BA953_02840 PF00152 tRNA synthetases class II (D, K and N) BA953_02850 PF00155 Aminotransferase class I and II BA953_02850 PF00392 Bacterial regulatory proteins, gntR family BA953_02860 PF00672 HAMP domain BA953_02860 PF01966 HD domain BA953_02865 PF00155 Aminotransferase class I and II BA953_02880 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BA953_02880 PF00271 Helicase conserved C-terminal domain BA953_02880 PF04408 Helicase associated domain (HA2) BA953_02880 PF11898 Domain of unknown function (DUF3418) BA953_02880 PF00270 DEAD/DEAH box helicase BA953_02885 PF00390 Malic enzyme, N-terminal domain BA953_02885 PF03949 Malic enzyme, NAD binding domain BA953_02895 PF02698 DUF218 domain BA953_02905 PF05193 Peptidase M16 inactive domain BA953_02905 PF00675 Insulinase (Peptidase family M16) BA953_02920 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BA953_02925 PF00266 Aminotransferase class-V BA953_02935 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA953_02940 PF00664 ABC transporter transmembrane region BA953_02940 PF00005 ABC transporter BA953_02945 PF00005 ABC transporter BA953_02945 PF00664 ABC transporter transmembrane region BA953_02950 PF07690 Major Facilitator Superfamily BA953_02955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_02955 PF03466 LysR substrate binding domain BA953_02960 PF02567 Phenazine biosynthesis-like protein BA953_02965 PF00849 RNA pseudouridylate synthase BA953_02965 PF01479 S4 domain BA953_02970 PF00563 EAL domain BA953_02970 PF00990 Diguanylate cyclase, GGDEF domain BA953_02970 PF03707 Bacterial signalling protein N terminal repeat BA953_02980 PF01300 Telomere recombination BA953_02985 PF02811 PHP domain BA953_02990 PF08056 Tryptophan operon leader peptide BA953_02995 PF04715 Anthranilate synthase component I, N terminal region BA953_02995 PF00425 chorismate binding enzyme BA953_03000 PF00117 Glutamine amidotransferase class-I BA953_03005 PF00591 Glycosyl transferase family, a/b domain BA953_03005 PF02885 Glycosyl transferase family, helical bundle domain BA953_03010 PF00218 Indole-3-glycerol phosphate synthase BA953_03010 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BA953_03015 PF00291 Pyridoxal-phosphate dependent enzyme BA953_03020 PF00290 Tryptophan synthase alpha chain BA953_03025 PF00375 Sodium:dicarboxylate symporter family BA953_03065 PF01494 FAD binding domain BA953_03085 PF00012 Hsp70 protein BA953_03090 PF00012 Hsp70 protein BA953_03100 PF03150 Di-haem cytochrome c peroxidase BA953_03100 PF00034 Cytochrome c BA953_03120 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BA953_03120 PF12833 Helix-turn-helix domain BA953_03130 PF04116 Fatty acid hydroxylase superfamily BA953_03160 PF02627 Carboxymuconolactone decarboxylase family BA953_03165 PF00672 HAMP domain BA953_03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_03165 PF02743 Cache domain BA953_03185 PF01323 DSBA-like thioredoxin domain BA953_03195 PF02311 AraC-like ligand binding domain BA953_03195 PF12833 Helix-turn-helix domain BA953_03200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_03200 PF03466 LysR substrate binding domain BA953_03215 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BA953_03215 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BA953_03225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_03225 PF03466 LysR substrate binding domain BA953_03240 PF01047 MarR family BA953_03245 PF02566 OsmC-like protein BA953_03250 PF01717 Cobalamin-independent synthase, Catalytic domain BA953_03250 PF08267 Cobalamin-independent synthase, N-terminal domain BA953_03255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_03255 PF03466 LysR substrate binding domain BA953_03270 PF03707 Bacterial signalling protein N terminal repeat BA953_03270 PF00563 EAL domain BA953_03270 PF00990 Diguanylate cyclase, GGDEF domain BA953_03275 PF00563 EAL domain BA953_03275 PF03707 Bacterial signalling protein N terminal repeat BA953_03275 PF00990 Diguanylate cyclase, GGDEF domain BA953_03280 PF08497 Radical SAM N-terminal BA953_03280 PF04055 Radical SAM superfamily BA953_03280 PF11842 Domain of unknown function (DUF3362) BA953_03285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_03285 PF00672 HAMP domain BA953_03285 PF12729 Four helix bundle sensory module for signal transduction BA953_03290 PF00266 Aminotransferase class-V BA953_03300 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA953_03300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_03300 PF00512 His Kinase A (phospho-acceptor) domain BA953_03315 PF04993 TfoX N-terminal domain BA953_03315 PF04994 TfoX C-terminal domain BA953_03325 PF03956 Lysine exporter LysO BA953_03335 PF00282 Pyridoxal-dependent decarboxylase conserved domain BA953_03340 PF01418 Helix-turn-helix domain, rpiR family BA953_03340 PF01380 SIS domain BA953_03350 PF00462 Glutaredoxin BA953_03355 PF02080 TrkA-C domain BA953_03355 PF06826 Predicted Permease Membrane Region BA953_03360 PF00528 Binding-protein-dependent transport system inner membrane component BA953_03365 PF00528 Binding-protein-dependent transport system inner membrane component BA953_03370 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA953_03375 PF00005 ABC transporter BA953_03385 PF02901 Pyruvate formate lyase-like BA953_03385 PF01228 Glycine radical BA953_03395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_03395 PF00672 HAMP domain BA953_03400 PF04055 Radical SAM superfamily BA953_03415 PF06629 MltA-interacting protein MipA BA953_03420 PF06798 PrkA serine protein kinase C-terminal domain BA953_03420 PF08298 PrkA AAA domain BA953_03425 PF04285 Protein of unknown function (DUF444) BA953_03430 PF04293 SpoVR like protein BA953_03435 PF02348 Cytidylyltransferase BA953_03440 PF03966 Trm112p-like protein BA953_03445 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BA953_03450 PF00664 ABC transporter transmembrane region BA953_03450 PF00005 ABC transporter BA953_03455 PF03772 Competence protein BA953_03455 PF00753 Metallo-beta-lactamase superfamily BA953_03465 PF02687 FtsX-like permease family BA953_03465 PF12704 MacB-like periplasmic core domain BA953_03470 PF00005 ABC transporter BA953_03475 PF02687 FtsX-like permease family BA953_03475 PF12704 MacB-like periplasmic core domain BA953_03485 PF17757 UvrB interaction domain BA953_03485 PF03461 TRCF domain BA953_03485 PF02559 CarD-like/TRCF domain BA953_03485 PF00270 DEAD/DEAH box helicase BA953_03485 PF00271 Helicase conserved C-terminal domain BA953_03505 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA953_03510 PF05728 Uncharacterised protein family (UPF0227) BA953_03520 PF08139 Prokaryotic membrane lipoprotein lipid attachment site BA953_03520 PF13036 Peptidoglycan-synthase activator LpoB BA953_03535 PF01230 HIT domain BA953_03540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_03540 PF00672 HAMP domain BA953_03550 PF00392 Bacterial regulatory proteins, gntR family BA953_03550 PF07840 FadR C-terminal domain BA953_03555 PF06450 Bacterial Na+/H+ antiporter B (NhaB) BA953_03560 PF02600 Disulfide bond formation protein DsbB BA953_03565 PF09397 Ftsk gamma domain BA953_03565 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BA953_03565 PF17854 FtsK alpha domain BA953_03565 PF01580 FtsK/SpoIIIE family BA953_03570 PF01037 Lrp/AsnC ligand binding domain BA953_03575 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BA953_03575 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BA953_03580 PF04217 Protein of unknown function, DUF412 BA953_03585 PF00871 Acetokinase family BA953_03590 PF07085 DRTGG domain BA953_03590 PF01515 Phosphate acetyl/butaryl transferase BA953_03595 PF17151 Periplasmic sensor domain BA953_03595 PF00990 Diguanylate cyclase, GGDEF domain BA953_03600 PF13409 Glutathione S-transferase, N-terminal domain BA953_03605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA953_03605 PF00005 ABC transporter BA953_03610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA953_03610 PF00005 ABC transporter BA953_03615 PF12911 N-terminal TM domain of oligopeptide transport permease C BA953_03615 PF00528 Binding-protein-dependent transport system inner membrane component BA953_03620 PF00528 Binding-protein-dependent transport system inner membrane component BA953_03625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA953_03635 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BA953_03640 PF00990 Diguanylate cyclase, GGDEF domain BA953_03640 PF17158 Membrane-associated sensor, integral membrane domain BA953_03655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_03655 PF00672 HAMP domain BA953_03655 PF02743 Cache domain BA953_03660 PF04389 Peptidase family M28 BA953_03660 PF04151 Bacterial pre-peptidase C-terminal domain BA953_03665 PF04151 Bacterial pre-peptidase C-terminal domain BA953_03665 PF05922 Peptidase inhibitor I9 BA953_03665 PF00082 Subtilase family BA953_03670 PF02743 Cache domain BA953_03670 PF00672 HAMP domain BA953_03670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_03680 PF16200 C-terminal region of band_7 BA953_03680 PF01145 SPFH domain / Band 7 family BA953_03700 PF00005 ABC transporter BA953_03700 PF02687 FtsX-like permease family BA953_03700 PF12704 MacB-like periplasmic core domain BA953_03705 PF02687 FtsX-like permease family BA953_03705 PF12704 MacB-like periplasmic core domain BA953_03705 PF00005 ABC transporter BA953_03710 PF02687 FtsX-like permease family BA953_03710 PF12704 MacB-like periplasmic core domain BA953_03720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_03730 PF07504 Fungalysin/Thermolysin Propeptide Motif BA953_03730 PF03413 Peptidase propeptide and YPEB domain BA953_03730 PF01447 Thermolysin metallopeptidase, catalytic domain BA953_03730 PF02868 Thermolysin metallopeptidase, alpha-helical domain BA953_03730 PF04151 Bacterial pre-peptidase C-terminal domain BA953_03740 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BA953_03740 PF00326 Prolyl oligopeptidase family BA953_03745 PF18416 N-acetylglucosamine binding protein domain 2 BA953_03745 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BA953_03755 PF00535 Glycosyl transferase family 2 BA953_03765 PF07075 Protein of unknown function (DUF1343) BA953_03770 PF01915 Glycosyl hydrolase family 3 C-terminal domain BA953_03770 PF00933 Glycosyl hydrolase family 3 N terminal domain BA953_03790 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BA953_03795 PF03480 Bacterial extracellular solute-binding protein, family 7 BA953_03800 PF01266 FAD dependent oxidoreductase BA953_03815 PF03601 Conserved hypothetical protein 698 BA953_03820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BA953_03820 PF00205 Thiamine pyrophosphate enzyme, central domain BA953_03820 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BA953_03825 PF12556 Cobaltochelatase CobS subunit N terminal BA953_03825 PF07728 AAA domain (dynein-related subfamily) BA953_03825 PF08406 CbbQ/NirQ/NorQ C-terminal BA953_03830 PF11775 Cobalamin biosynthesis protein CobT VWA domain BA953_03830 PF06213 Cobalamin biosynthesis protein CobT BA953_03835 PF01925 Sulfite exporter TauE/SafE BA953_03840 PF01515 Phosphate acetyl/butaryl transferase BA953_03845 PF09339 IclR helix-turn-helix domain BA953_03845 PF01614 Bacterial transcriptional regulator BA953_03890 PF00990 Diguanylate cyclase, GGDEF domain BA953_03890 PF05230 MASE2 domain BA953_03900 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BA953_03905 PF09619 Type III secretion system lipoprotein chaperone (YscW) BA953_03925 PF01037 Lrp/AsnC ligand binding domain BA953_03925 PF13404 AsnC-type helix-turn-helix domain BA953_03930 PF00291 Pyridoxal-phosphate dependent enzyme BA953_03950 PF07690 Major Facilitator Superfamily BA953_03955 PF03601 Conserved hypothetical protein 698 BA953_03960 PF00501 AMP-binding enzyme BA953_03960 PF13193 AMP-binding enzyme C-terminal domain BA953_03965 PF13378 Enolase C-terminal domain-like BA953_03970 PF00378 Enoyl-CoA hydratase/isomerase BA953_03975 PF12697 Alpha/beta hydrolase family BA953_03980 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BA953_03980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BA953_03980 PF16582 Middle domain of thiamine pyrophosphate BA953_03985 PF00425 chorismate binding enzyme BA953_03990 PF00155 Aminotransferase class I and II BA953_04000 PF00704 Glycosyl hydrolases family 18 BA953_04005 PF13286 Phosphohydrolase-associated domain BA953_04005 PF01966 HD domain BA953_04010 PF00962 Adenosine/AMP deaminase BA953_04025 PF00271 Helicase conserved C-terminal domain BA953_04025 PF00270 DEAD/DEAH box helicase BA953_04030 PF01343 Peptidase family S49 BA953_04030 PF08496 Peptidase family S49 N-terminal BA953_04035 PF00106 short chain dehydrogenase BA953_04050 PF01336 OB-fold nucleic acid binding domain BA953_04050 PF14579 Helix-hairpin-helix motif BA953_04050 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BA953_04050 PF07733 Bacterial DNA polymerase III alpha NTPase domain BA953_04050 PF02811 PHP domain BA953_04055 PF01584 CheW-like domain BA953_04055 PF00072 Response regulator receiver domain BA953_04060 PF00480 ROK family BA953_04065 PF02887 Pyruvate kinase, alpha/beta domain BA953_04065 PF00224 Pyruvate kinase, barrel domain BA953_04070 PF01734 Patatin-like phospholipase BA953_04080 PF00209 Sodium:neurotransmitter symporter family BA953_04090 PF02378 Phosphotransferase system, EIIC BA953_04090 PF00367 phosphotransferase system, EIIB BA953_04095 PF01026 TatD related DNase BA953_04100 PF09115 DNA polymerase III, delta subunit, C terminal BA953_04105 PF02223 Thymidylate kinase BA953_04110 PF02618 YceG-like family BA953_04115 PF01063 Amino-transferase class IV BA953_04120 PF02801 Beta-ketoacyl synthase, C-terminal domain BA953_04120 PF00109 Beta-ketoacyl synthase, N-terminal domain BA953_04125 PF00550 Phosphopantetheine attachment site BA953_04135 PF00698 Acyl transferase domain BA953_04140 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BA953_04140 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BA953_04145 PF02504 Fatty acid synthesis protein BA953_04155 PF02620 Large ribosomal RNA subunit accumulation protein YceD BA953_04160 PF02545 Maf-like protein BA953_04165 PF00849 RNA pseudouridylate synthase BA953_04165 PF01479 S4 domain BA953_04170 PF00575 S1 RNA binding domain BA953_04170 PF10150 Ribonuclease E/G family BA953_04170 PF12111 Polyribonucleotide phosphorylase C terminal BA953_04175 PF01740 STAS domain BA953_04175 PF00916 Sulfate permease family BA953_04180 PF00570 HRDC domain BA953_04180 PF01612 3'-5' exonuclease BA953_04185 PF00501 AMP-binding enzyme BA953_04185 PF13193 AMP-binding enzyme C-terminal domain BA953_04190 PF00561 alpha/beta hydrolase fold BA953_04205 PF00814 Glycoprotease family BA953_04210 PF13307 Helicase C-terminal domain BA953_04210 PF04851 Type III restriction enzyme, res subunit BA953_04220 PF01842 ACT domain BA953_04220 PF00551 Formyl transferase BA953_04225 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA953_04225 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BA953_04230 PF01343 Peptidase family S49 BA953_04235 PF00710 Asparaginase, N-terminal BA953_04235 PF17763 Glutaminase/Asparaginase C-terminal domain BA953_04245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BA953_04245 PF02403 Seryl-tRNA synthetase N-terminal domain BA953_04250 PF00004 ATPase family associated with various cellular activities (AAA) BA953_04250 PF12002 MgsA AAA+ ATPase C terminal BA953_04250 PF16193 AAA C-terminal domain BA953_04255 PF03548 Outer membrane lipoprotein carrier protein LolA BA953_04260 PF07517 SecA DEAD-like domain BA953_04260 PF02810 SEC-C motif BA953_04260 PF01043 SecA preprotein cross-linking domain BA953_04260 PF07516 SecA Wing and Scaffold domain BA953_04270 PF01207 Dihydrouridine synthase (Dus) BA953_04275 PF05230 MASE2 domain BA953_04275 PF00990 Diguanylate cyclase, GGDEF domain BA953_04280 PF00005 ABC transporter BA953_04285 PF02653 Branched-chain amino acid transport system / permease component BA953_04300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_04300 PF03466 LysR substrate binding domain BA953_04310 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) BA953_04320 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BA953_04325 PF18073 Rubredoxin metal binding domain BA953_04330 PF06305 Lipopolysaccharide assembly protein A domain BA953_04335 PF00216 Bacterial DNA-binding protein BA953_04340 PF00575 S1 RNA binding domain BA953_04345 PF02224 Cytidylate kinase BA953_04355 PF13145 PPIC-type PPIASE domain BA953_04360 PF00216 Bacterial DNA-binding protein BA953_04365 PF05362 Lon protease (S16) C-terminal proteolytic domain BA953_04365 PF00004 ATPase family associated with various cellular activities (AAA) BA953_04365 PF02190 ATP-dependent protease La (LON) substrate-binding domain BA953_04370 PF06689 ClpX C4-type zinc finger BA953_04370 PF07724 AAA domain (Cdc48 subfamily) BA953_04370 PF10431 C-terminal, D2-small domain, of ClpB protein BA953_04375 PF00574 Clp protease BA953_04380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BA953_04380 PF05698 Bacterial trigger factor protein (TF) C-terminus BA953_04380 PF05697 Bacterial trigger factor protein (TF) BA953_04385 PF02743 Cache domain BA953_04385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_04385 PF00512 His Kinase A (phospho-acceptor) domain BA953_04390 PF00072 Response regulator receiver domain BA953_04390 PF02954 Bacterial regulatory protein, Fis family BA953_04390 PF00158 Sigma-54 interaction domain BA953_04400 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA953_04405 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BA953_04410 PF03480 Bacterial extracellular solute-binding protein, family 7 BA953_04415 PF00005 ABC transporter BA953_04415 PF03459 TOBE domain BA953_04415 PF17912 MalK OB fold domain BA953_04420 PF00528 Binding-protein-dependent transport system inner membrane component BA953_04430 PF01547 Bacterial extracellular solute-binding protein BA953_04435 PF00672 HAMP domain BA953_04435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_04435 PF00512 His Kinase A (phospho-acceptor) domain BA953_04440 PF00072 Response regulator receiver domain BA953_04440 PF00486 Transcriptional regulatory protein, C terminal BA953_04445 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BA953_04460 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BA953_04460 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BA953_04465 PF13662 Toprim domain BA953_04465 PF02132 RecR protein BA953_04470 PF02575 YbaB/EbfC DNA-binding family BA953_04475 PF12170 DNA polymerase III tau subunit V interacting with alpha BA953_04475 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BA953_04475 PF12169 DNA polymerase III subunits gamma and tau domain III BA953_04480 PF00156 Phosphoribosyl transferase domain BA953_04485 PF04304 Protein of unknown function (DUF454) BA953_04490 PF00072 Response regulator receiver domain BA953_04495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_04495 PF03466 LysR substrate binding domain BA953_04500 PF00881 Nitroreductase family BA953_04505 PF00378 Enoyl-CoA hydratase/isomerase BA953_04505 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BA953_04505 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BA953_04510 PF02803 Thiolase, C-terminal domain BA953_04510 PF00108 Thiolase, N-terminal domain BA953_04515 PF04542 Sigma-70 region 2 BA953_04515 PF08281 Sigma-70, region 4 BA953_04525 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BA953_04530 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BA953_04535 PF04333 MlaA lipoprotein BA953_04540 PF03918 Cytochrome C biogenesis protein BA953_04545 PF03918 Cytochrome C biogenesis protein BA953_04550 PF08534 Redoxin BA953_04555 PF01578 Cytochrome C assembly protein BA953_04555 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BA953_04560 PF03100 CcmE BA953_04565 PF04995 Heme exporter protein D (CcmD) BA953_04570 PF01578 Cytochrome C assembly protein BA953_04575 PF03379 CcmB protein BA953_04580 PF00005 ABC transporter BA953_04590 PF01584 CheW-like domain BA953_04600 PF13614 AAA domain BA953_04605 PF01339 CheB methylesterase BA953_04605 PF00072 Response regulator receiver domain BA953_04610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_04610 PF01627 Hpt domain BA953_04610 PF07194 P2 response regulator binding domain BA953_04610 PF01584 CheW-like domain BA953_04610 PF02895 Signal transducing histidine kinase, homodimeric domain BA953_04615 PF04344 Chemotaxis phosphatase, CheZ BA953_04620 PF00072 Response regulator receiver domain BA953_04625 PF04545 Sigma-70, region 4 BA953_04625 PF04539 Sigma-70 region 3 BA953_04625 PF04542 Sigma-70 region 2 BA953_04630 PF10609 NUBPL iron-transfer P-loop NTPase BA953_04635 PF00448 SRP54-type protein, GTPase domain BA953_04640 PF00771 FHIPEP family BA953_04645 PF00300 Histidine phosphatase superfamily (branch 1) BA953_04650 PF00675 Insulinase (Peptidase family M16) BA953_04650 PF05193 Peptidase M16 inactive domain BA953_04655 PF06185 YecM protein BA953_04660 PF00750 tRNA synthetases class I (R) BA953_04660 PF05746 DALR anticodon binding domain BA953_04660 PF03485 Arginyl tRNA synthetase N terminal domain BA953_04675 PF07670 Nucleoside recognition BA953_04675 PF02421 Ferrous iron transport protein B BA953_04675 PF07664 Ferrous iron transport protein B C terminus BA953_04680 PF04023 FeoA domain BA953_04685 PF12833 Helix-turn-helix domain BA953_04685 PF02311 AraC-like ligand binding domain BA953_04690 PF01297 Zinc-uptake complex component A periplasmic BA953_04695 PF00005 ABC transporter BA953_04700 PF00950 ABC 3 transport family BA953_04705 PF00156 Phosphoribosyl transferase domain BA953_04710 PF02674 Colicin V production protein BA953_04715 PF05036 Sporulation related domain BA953_04720 PF02875 Mur ligase family, glutamate ligase domain BA953_04720 PF08245 Mur ligase middle domain BA953_04725 PF01039 Carboxyl transferase domain BA953_04725 PF17848 Acetyl-coA carboxylase zinc finger domain BA953_04730 PF01416 tRNA pseudouridine synthase BA953_04740 PF02774 Semialdehyde dehydrogenase, dimerisation domain BA953_04740 PF01118 Semialdehyde dehydrogenase, NAD binding domain BA953_04745 PF11890 Domain of unknown function (DUF3410) BA953_04745 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BA953_04745 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BA953_04750 PF00109 Beta-ketoacyl synthase, N-terminal domain BA953_04750 PF02801 Beta-ketoacyl synthase, C-terminal domain BA953_04755 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BA953_04755 PF01266 FAD dependent oxidoreductase BA953_04760 PF03358 NADPH-dependent FMN reductase BA953_04765 PF08891 YfcL protein BA953_04780 PF04315 Elongation factor P hydroxylase BA953_04785 PF03458 UPF0126 domain BA953_04795 PF01264 Chorismate synthase BA953_04800 PF05175 Methyltransferase small domain BA953_04805 PF01713 Smr domain BA953_04810 PF01312 FlhB HrpN YscU SpaS Family BA953_04815 PF01311 Bacterial export proteins, family 1 BA953_04820 PF01313 Bacterial export proteins, family 3 BA953_04825 PF00813 FliP family BA953_04830 PF04347 Flagellar biosynthesis protein, FliO BA953_04835 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BA953_04840 PF02154 Flagellar motor switch protein FliM BA953_04840 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BA953_04860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BA953_04860 PF18269 T3SS EscN ATPase C-terminal domain BA953_04870 PF14841 FliG middle domain BA953_04870 PF14842 FliG N-terminal domain BA953_04870 PF01706 FliG C-terminal domain BA953_04875 PF08345 Flagellar M-ring protein C-terminal BA953_04875 PF01514 Secretory protein of YscJ/FliF family BA953_04880 PF02049 Flagellar hook-basal body complex protein FliE BA953_04885 PF02954 Bacterial regulatory protein, Fis family BA953_04885 PF00158 Sigma-54 interaction domain BA953_04885 PF00072 Response regulator receiver domain BA953_04890 PF00512 His Kinase A (phospho-acceptor) domain BA953_04890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_04895 PF00072 Response regulator receiver domain BA953_04895 PF02954 Bacterial regulatory protein, Fis family BA953_04895 PF00158 Sigma-54 interaction domain BA953_04900 PF02561 Flagellar protein FliS BA953_04910 PF02465 Flagellar hook-associated protein 2 N-terminus BA953_04910 PF07196 Flagellin hook IN motif BA953_04910 PF07195 Flagellar hook-associated protein 2 C-terminus BA953_04915 PF03646 FlaG protein BA953_04920 PF07196 Flagellin hook IN motif BA953_04920 PF00669 Bacterial flagellin N-terminal helical region BA953_04920 PF00700 Bacterial flagellin C-terminal helical region BA953_04925 PF00700 Bacterial flagellin C-terminal helical region BA953_04925 PF07196 Flagellin hook IN motif BA953_04925 PF00669 Bacterial flagellin N-terminal helical region BA953_04930 PF00669 Bacterial flagellin N-terminal helical region BA953_04930 PF00700 Bacterial flagellin C-terminal helical region BA953_04930 PF07196 Flagellin hook IN motif BA953_04935 PF04261 Dyp-type peroxidase family BA953_04940 PF11143 Protein of unknown function (DUF2919) BA953_04945 PF03918 Cytochrome C biogenesis protein BA953_04950 PF08534 Redoxin BA953_04955 PF01578 Cytochrome C assembly protein BA953_04955 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BA953_04960 PF03916 Polysulphide reductase, NrfD BA953_04965 PF00037 4Fe-4S binding domain BA953_04965 PF13247 4Fe-4S dicluster domain BA953_04975 PF02335 Cytochrome c552 BA953_05000 PF03960 ArsC family BA953_05005 PF01546 Peptidase family M20/M25/M40 BA953_05005 PF07687 Peptidase dimerisation domain BA953_05020 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) BA953_05025 PF07348 Syd protein (SUKH-2) BA953_05030 PF14489 QueF-like protein BA953_05030 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BA953_05040 PF00990 Diguanylate cyclase, GGDEF domain BA953_05040 PF00072 Response regulator receiver domain BA953_05045 PF11892 Domain of unknown function (DUF3412) BA953_05045 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BA953_05045 PF03641 Possible lysine decarboxylase BA953_05050 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BA953_05050 PF01367 5'-3' exonuclease, C-terminal SAM fold BA953_05055 PF01223 DNA/RNA non-specific endonuclease BA953_05075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_05075 PF03466 LysR substrate binding domain BA953_05080 PF02568 Thiamine biosynthesis protein (ThiI) BA953_05080 PF02926 THUMP domain BA953_05085 PF13677 Membrane MotB of proton-channel complex MotA/MotB BA953_05085 PF00691 OmpA family BA953_05090 PF01618 MotA/TolQ/ExbB proton channel family BA953_05100 PF00348 Polyprenyl synthetase BA953_05105 PF02780 Transketolase, C-terminal domain BA953_05105 PF02779 Transketolase, pyrimidine binding domain BA953_05105 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BA953_05110 PF00849 RNA pseudouridylate synthase BA953_05115 PF04287 tRNA pseudouridine synthase C BA953_05135 PF00549 CoA-ligase BA953_05135 PF02629 CoA binding domain BA953_05140 PF08442 ATP-grasp domain BA953_05140 PF00549 CoA-ligase BA953_05145 PF00364 Biotin-requiring enzyme BA953_05145 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BA953_05145 PF02817 e3 binding domain BA953_05150 PF02779 Transketolase, pyrimidine binding domain BA953_05150 PF16870 2-oxoglutarate dehydrogenase C-terminal BA953_05150 PF00676 Dehydrogenase E1 component BA953_05150 PF16078 2-oxoglutarate dehydrogenase N-terminus BA953_05155 PF13085 2Fe-2S iron-sulfur cluster binding domain BA953_05160 PF02910 Fumarate reductase flavoprotein C-term BA953_05160 PF00890 FAD binding domain BA953_05165 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BA953_05170 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BA953_05175 PF00285 Citrate synthase, C-terminal domain BA953_05180 PF01784 NIF3 (NGG1p interacting factor 3) BA953_05190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BA953_05190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BA953_05190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BA953_05190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BA953_05195 PF17206 SeqA protein N-terminal domain BA953_05195 PF03925 SeqA protein C-terminal domain BA953_05200 PF12697 Alpha/beta hydrolase family BA953_05210 PF00258 Flavodoxin BA953_05220 PF01475 Ferric uptake regulator family BA953_05225 PF01180 Dihydroorotate dehydrogenase BA953_05235 PF00749 tRNA synthetases class I (E and Q), catalytic domain BA953_05235 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BA953_05240 PF00367 phosphotransferase system, EIIB BA953_05240 PF02378 Phosphotransferase system, EIIC BA953_05240 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BA953_05245 PF01979 Amidohydrolase family BA953_05250 PF00480 ROK family BA953_05250 PF01047 MarR family BA953_05255 PF02254 TrkA-N domain BA953_05255 PF00999 Sodium/hydrogen exchanger family BA953_05260 PF13537 Glutamine amidotransferase domain BA953_05260 PF00733 Asparagine synthase BA953_05265 PF00854 POT family BA953_05270 PF02838 Glycosyl hydrolase family 20, domain 2 BA953_05270 PF00728 Glycosyl hydrolase family 20, catalytic domain BA953_05270 PF03173 Putative carbohydrate binding domain BA953_05270 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain BA953_05290 PF01713 Smr domain BA953_05295 PF00849 RNA pseudouridylate synthase BA953_05295 PF01479 S4 domain BA953_05305 PF02769 AIR synthase related protein, C-terminal domain BA953_05305 PF00586 AIR synthase related protein, N-terminal domain BA953_05310 PF00551 Formyl transferase BA953_05320 PF06786 Uncharacterised protein family (UPF0253) BA953_05335 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BA953_05335 PF02769 AIR synthase related protein, C-terminal domain BA953_05335 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BA953_05340 PF01464 Transglycosylase SLT domain BA953_05340 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA953_05350 PF03806 AbgT putative transporter family BA953_05370 PF07963 Prokaryotic N-terminal methylation motif BA953_05375 PF07963 Prokaryotic N-terminal methylation motif BA953_05375 PF00114 Pilin (bacterial filament) BA953_05380 PF00226 DnaJ domain BA953_05380 PF00684 DnaJ central domain BA953_05380 PF01556 DnaJ C terminal domain BA953_05385 PF00012 Hsp70 protein BA953_05390 PF00375 Sodium:dicarboxylate symporter family BA953_05395 PF01025 GrpE BA953_05405 PF02463 RecF/RecN/SMC N terminal domain BA953_05410 PF04355 SmpA / OmlA family BA953_05415 PF03658 RnfH family Ubiquitin BA953_05420 PF03364 Polyketide cyclase / dehydrase and lipid transport BA953_05425 PF01668 SmpB protein BA953_05435 PF00589 Phage integrase family BA953_05435 PF13356 Arm DNA-binding domain BA953_05440 PF04471 Restriction endonuclease BA953_05440 PF14338 Mrr N-terminal domain BA953_05455 PF01420 Type I restriction modification DNA specificity domain BA953_05460 PF02384 N-6 DNA Methylase BA953_05465 PF00239 Resolvase, N terminal domain BA953_05465 PF02796 Helix-turn-helix domain of resolvase BA953_05495 PF01381 Helix-turn-helix BA953_05500 PF07804 HipA-like C-terminal domain BA953_05500 PF13657 HipA N-terminal domain BA953_05510 PF12852 Cupin BA953_05510 PF12833 Helix-turn-helix domain BA953_05515 PF12706 Beta-lactamase superfamily domain BA953_05565 PF00005 ABC transporter BA953_05565 PF00664 ABC transporter transmembrane region BA953_05565 PF03412 Peptidase C39 family BA953_05570 PF02311 AraC-like ligand binding domain BA953_05570 PF12833 Helix-turn-helix domain BA953_05580 PF08447 PAS fold BA953_05580 PF13426 PAS domain BA953_05580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_05585 PF00924 Mechanosensitive ion channel BA953_05590 PF02028 BCCT, betaine/carnitine/choline family transporter BA953_05615 PF01553 Acyltransferase BA953_05620 PF01584 CheW-like domain BA953_05620 PF00072 Response regulator receiver domain BA953_05625 PF01053 Cys/Met metabolism PLP-dependent enzyme BA953_05635 PF07885 Ion channel BA953_05640 PF03466 LysR substrate binding domain BA953_05640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_05645 PF01266 FAD dependent oxidoreductase BA953_05650 PF01235 Sodium:alanine symporter family BA953_05655 PF01184 GPR1/FUN34/yaaH family BA953_05660 PF00704 Glycosyl hydrolases family 18 BA953_05660 PF06483 Chitinase C BA953_05665 PF00117 Glutamine amidotransferase class-I BA953_05665 PF00958 GMP synthase C terminal domain BA953_05665 PF02540 NAD synthase BA953_05670 PF00571 CBS domain BA953_05670 PF00478 IMP dehydrogenase / GMP reductase domain BA953_05675 PF02601 Exonuclease VII, large subunit BA953_05675 PF13742 OB-fold nucleic acid binding domain BA953_05685 PF00990 Diguanylate cyclase, GGDEF domain BA953_05685 PF13185 GAF domain BA953_05695 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BA953_05695 PF01926 50S ribosome-binding GTPase BA953_05700 PF13360 PQQ-like domain BA953_05705 PF09976 Tetratricopeptide repeat-like domain BA953_05710 PF03129 Anticodon binding domain BA953_05710 PF13393 Histidyl-tRNA synthetase BA953_05715 PF04551 GcpE protein BA953_05720 PF13464 Domain of unknown function (DUF4115) BA953_05725 PF04055 Radical SAM superfamily BA953_05730 PF02657 Fe-S metabolism associated domain BA953_05735 PF00899 ThiF family BA953_05740 PF06725 3D domain BA953_05740 PF03562 MltA specific insert domain BA953_05750 PF00583 Acetyltransferase (GNAT) family BA953_05750 PF00696 Amino acid kinase family BA953_05760 PF13538 UvrD-like helicase C-terminal domain BA953_05765 PF12705 PD-(D/E)XK nuclease superfamily BA953_05765 PF13361 UvrD-like helicase C-terminal domain BA953_05765 PF00580 UvrD/REP helicase N-terminal domain BA953_05770 PF17946 RecC C-terminal domain BA953_05780 PF03466 LysR substrate binding domain BA953_05780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_05785 PF00873 AcrB/AcrD/AcrF family BA953_05790 PF00529 HlyD membrane-fusion protein of T1SS BA953_05790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_05795 PF00440 Bacterial regulatory proteins, tetR family BA953_05800 PF07130 YebG protein BA953_05805 PF03932 CutC family BA953_05810 PF03976 Polyphosphate kinase 2 (PPK2) BA953_05815 PF01895 PhoU domain BA953_05820 PF00005 ABC transporter BA953_05825 PF00528 Binding-protein-dependent transport system inner membrane component BA953_05830 PF00528 Binding-protein-dependent transport system inner membrane component BA953_05835 PF13089 Polyphosphate kinase N-terminal domain BA953_05835 PF17941 Polyphosphate kinase C-terminal domain 1 BA953_05835 PF02503 Polyphosphate kinase middle domain BA953_05835 PF13090 Polyphosphate kinase C-terminal domain 2 BA953_05840 PF02541 Ppx/GppA phosphatase family BA953_05845 PF12849 PBP superfamily domain BA953_05850 PF00512 His Kinase A (phospho-acceptor) domain BA953_05850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_05850 PF11808 Phosphate regulon sensor protein PhoR BA953_05850 PF00989 PAS fold BA953_05855 PF00486 Transcriptional regulatory protein, C terminal BA953_05855 PF00072 Response regulator receiver domain BA953_05860 PF04381 Putative exonuclease, RdgC BA953_05870 PF12838 4Fe-4S dicluster domain BA953_05875 PF03411 Penicillin-insensitive murein endopeptidase BA953_05890 PF07549 SecD/SecF GG Motif BA953_05890 PF02355 Protein export membrane protein BA953_05895 PF07549 SecD/SecF GG Motif BA953_05895 PF02355 Protein export membrane protein BA953_05895 PF13721 SecD export protein N-terminal TM region BA953_05900 PF02699 Preprotein translocase subunit BA953_05905 PF01702 Queuine tRNA-ribosyltransferase BA953_05910 PF02547 Queuosine biosynthesis protein BA953_05915 PF00571 CBS domain BA953_05920 PF00463 Isocitrate lyase family BA953_05925 PF01274 Malate synthase BA953_05935 PF00578 AhpC/TSA family BA953_05935 PF10417 C-terminal domain of 1-Cys peroxiredoxin BA953_05940 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle BA953_05940 PF14602 Hexapeptide repeat of succinyl-transferase BA953_05950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BA953_05960 PF12833 Helix-turn-helix domain BA953_05965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BA953_05965 PF02378 Phosphotransferase system, EIIC BA953_05965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BA953_05980 PF01588 Putative tRNA binding domain BA953_05985 PF00356 Bacterial regulatory proteins, lacI family BA953_05995 PF00288 GHMP kinases N terminal domain BA953_05995 PF10509 Galactokinase galactose-binding signature BA953_05995 PF08544 GHMP kinases C terminal BA953_06000 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BA953_06000 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BA953_06005 PF16363 GDP-mannose 4,6 dehydratase BA953_06010 PF00356 Bacterial regulatory proteins, lacI family BA953_06015 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BA953_06015 PF00703 Glycosyl hydrolases family 2 BA953_06015 PF02837 Glycosyl hydrolases family 2, sugar binding domain BA953_06015 PF02929 Beta galactosidase small chain BA953_06015 PF16353 Domain of unknown function(DUF4981) BA953_06020 PF04074 YhcH/YjgK/YiaL BA953_06025 PF13520 Amino acid permease BA953_06030 PF00440 Bacterial regulatory proteins, tetR family BA953_06035 PF12706 Beta-lactamase superfamily domain BA953_06045 PF01204 Trehalase BA953_06060 PF11975 Family 4 glycosyl hydrolase C-terminal domain BA953_06060 PF02056 Family 4 glycosyl hydrolase BA953_06065 PF12833 Helix-turn-helix domain BA953_06075 PF03466 LysR substrate binding domain BA953_06075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_06100 PF00437 Type II/IV secretion system protein BA953_06130 PF00263 Bacterial type II and III secretion system protein BA953_06130 PF13629 Pilus formation protein N terminal region BA953_06130 PF04972 BON domain BA953_06165 PF02805 Metal binding domain of Ada BA953_06165 PF12833 Helix-turn-helix domain BA953_06170 PF00501 AMP-binding enzyme BA953_06175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_06175 PF03466 LysR substrate binding domain BA953_06185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_06185 PF03466 LysR substrate binding domain BA953_06190 PF03144 Elongation factor Tu domain 2 BA953_06190 PF00009 Elongation factor Tu GTP binding domain BA953_06190 PF00679 Elongation factor G C-terminus BA953_06190 PF14492 Elongation Factor G, domain II BA953_06190 PF03764 Elongation factor G, domain IV BA953_06195 PF00334 Nucleoside diphosphate kinase BA953_06200 PF00883 Cytosol aminopeptidase family, catalytic domain BA953_06200 PF12404 Peptidase BA953_06205 PF04384 Iron-sulphur cluster assembly BA953_06210 PF00111 2Fe-2S iron-sulfur cluster binding domain BA953_06215 PF00012 Hsp70 protein BA953_06220 PF00226 DnaJ domain BA953_06220 PF07743 HSCB C-terminal oligomerisation domain BA953_06225 PF01521 Iron-sulphur cluster biosynthesis BA953_06230 PF01592 NifU-like N terminal domain BA953_06235 PF00266 Aminotransferase class-V BA953_06240 PF02082 Transcriptional regulator BA953_06245 PF00588 SpoU rRNA Methylase family BA953_06250 PF00459 Inositol monophosphatase family BA953_06290 PF10431 C-terminal, D2-small domain, of ClpB protein BA953_06290 PF07724 AAA domain (Cdc48 subfamily) BA953_06290 PF17871 AAA lid domain BA953_06290 PF00004 ATPase family associated with various cellular activities (AAA) BA953_06290 PF02861 Clp amino terminal domain, pathogenicity island component BA953_06300 PF01479 S4 domain BA953_06300 PF00849 RNA pseudouridylate synthase BA953_06305 PF13525 Outer membrane lipoprotein BA953_06310 PF01464 Transglycosylase SLT domain BA953_06315 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BA953_06320 PF00800 Prephenate dehydratase BA953_06320 PF01817 Chorismate mutase type II BA953_06325 PF13416 Bacterial extracellular solute-binding protein BA953_06330 PF00990 Diguanylate cyclase, GGDEF domain BA953_06330 PF00563 EAL domain BA953_06335 PF01931 Protein of unknown function DUF84 BA953_06340 PF01371 Trp repressor protein BA953_06345 PF01464 Transglycosylase SLT domain BA953_06345 PF14718 Soluble lytic murein transglycosylase L domain BA953_06350 PF00005 ABC transporter BA953_06350 PF12848 ABC transporter BA953_06355 PF07238 PilZ domain BA953_06360 PF04225 Opacity-associated protein A LysM-like domain BA953_06360 PF01551 Peptidase family M23 BA953_06365 PF02153 Prephenate dehydrogenase BA953_06365 PF01817 Chorismate mutase type II BA953_06370 PF00793 DAHP synthetase I family BA953_06375 PF06580 Histidine kinase BA953_06375 PF07694 5TMR of 5TMR-LYT BA953_06380 PF00072 Response regulator receiver domain BA953_06380 PF04397 LytTr DNA-binding domain BA953_06385 PF00933 Glycosyl hydrolase family 3 N terminal domain BA953_06390 PF01418 Helix-turn-helix domain, rpiR family BA953_06390 PF01380 SIS domain BA953_06405 PF03702 Anhydro-N-acetylmuramic acid kinase BA953_06410 PF13580 SIS domain BA953_06420 PF02554 Carbon starvation protein CstA BA953_06425 PF02401 LytB protein BA953_06430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BA953_06435 PF01252 Signal peptidase (SPase) II BA953_06440 PF08264 Anticodon-binding domain of tRNA BA953_06440 PF06827 Zinc finger found in FPG and IleRS BA953_06440 PF00133 tRNA synthetases class I (I, L, M and V) BA953_06445 PF06574 FAD synthetase BA953_06445 PF01687 Riboflavin kinase BA953_06450 PF03023 Lipid II flippase MurJ BA953_06455 PF01649 Ribosomal protein S20 BA953_06460 PF01022 Bacterial regulatory protein, arsR family BA953_06465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_06465 PF03466 LysR substrate binding domain BA953_06475 PF02690 Na+/Pi-cotransporter BA953_06480 PF00303 Thymidylate synthase BA953_06485 PF01790 Prolipoprotein diacylglyceryl transferase BA953_06490 PF01925 Sulfite exporter TauE/SafE BA953_06495 PF01590 GAF domain BA953_06495 PF05524 PEP-utilising enzyme, N-terminal BA953_06495 PF00391 PEP-utilising enzyme, mobile domain BA953_06495 PF02896 PEP-utilising enzyme, TIM barrel domain BA953_06505 PF02976 DNA mismatch repair enzyme MutH BA953_06515 PF00248 Aldo/keto reductase family BA953_06525 PF00072 Response regulator receiver domain BA953_06525 PF02954 Bacterial regulatory protein, Fis family BA953_06525 PF00158 Sigma-54 interaction domain BA953_06535 PF01047 MarR family BA953_06540 PF07719 Tetratricopeptide repeat BA953_06540 PF13181 Tetratricopeptide repeat BA953_06545 PF00013 KH domain BA953_06545 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BA953_06545 PF01138 3' exoribonuclease family, domain 1 BA953_06545 PF03725 3' exoribonuclease family, domain 2 BA953_06545 PF00575 S1 RNA binding domain BA953_06550 PF00312 Ribosomal protein S15 BA953_06555 PF01048 Phosphorylase superfamily BA953_06560 PF03186 CobD/Cbib protein BA953_06565 PF01497 Periplasmic binding protein BA953_06570 PF03458 UPF0126 domain BA953_06575 PF00291 Pyridoxal-phosphate dependent enzyme BA953_06575 PF14821 Threonine synthase N terminus BA953_06580 PF00288 GHMP kinases N terminal domain BA953_06580 PF08544 GHMP kinases C terminal BA953_06585 PF01842 ACT domain BA953_06585 PF00742 Homoserine dehydrogenase BA953_06585 PF03447 Homoserine dehydrogenase, NAD binding domain BA953_06585 PF13840 ACT domain BA953_06585 PF00696 Amino acid kinase family BA953_06595 PF03737 Aldolase/RraA BA953_06605 PF00486 Transcriptional regulatory protein, C terminal BA953_06605 PF00072 Response regulator receiver domain BA953_06615 PF03710 Glutamate-ammonia ligase adenylyltransferase BA953_06615 PF08335 GlnD PII-uridylyltransferase BA953_06620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_06620 PF00672 HAMP domain BA953_06625 PF00027 Cyclic nucleotide-binding domain BA953_06625 PF07885 Ion channel BA953_06630 PF01928 CYTH domain BA953_06635 PF01865 Protein of unknown function DUF47 BA953_06640 PF01384 Phosphate transporter family BA953_06645 PF08239 Bacterial SH3 domain BA953_06650 PF16537 Type II secretion system protein B BA953_06655 PF01471 Putative peptidoglycan binding domain BA953_06655 PF13401 AAA domain BA953_06660 PF12627 Probable RNA and SrmB- binding site of polymerase A BA953_06660 PF01743 Poly A polymerase head domain BA953_06660 PF01966 HD domain BA953_06665 PF03952 Enolase, N-terminal domain BA953_06665 PF00113 Enolase, C-terminal TIM barrel domain BA953_06670 PF00117 Glutamine amidotransferase class-I BA953_06670 PF06418 CTP synthase N-terminus BA953_06680 PF13291 ACT domain BA953_06680 PF04607 Region found in RelA / SpoT proteins BA953_06680 PF02824 TGS domain BA953_06685 PF01938 TRAM domain BA953_06685 PF05958 tRNA (Uracil-5-)-methyltransferase BA953_06690 PF01627 Hpt domain BA953_06690 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BA953_06690 PF00072 Response regulator receiver domain BA953_06690 PF00672 HAMP domain BA953_06690 PF00512 His Kinase A (phospho-acceptor) domain BA953_06690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_06695 PF01648 4'-phosphopantetheinyl transferase superfamily BA953_06700 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BA953_06705 PF02565 Recombination protein O C terminal BA953_06705 PF11967 Recombination protein O N terminal BA953_06710 PF07650 KH domain BA953_06710 PF01926 50S ribosome-binding GTPase BA953_06720 PF10502 Signal peptidase, peptidase S26 BA953_06725 PF06421 GTP-binding protein LepA C-terminus BA953_06725 PF03144 Elongation factor Tu domain 2 BA953_06725 PF00009 Elongation factor Tu GTP binding domain BA953_06725 PF00679 Elongation factor G C-terminus BA953_06735 PF03888 MucB/RseB N-terminal domain BA953_06735 PF17188 MucB/RseB C-terminal domain BA953_06740 PF03873 Anti sigma-E protein RseA, C-terminal domain BA953_06740 PF03872 Anti sigma-E protein RseA, N-terminal domain BA953_06745 PF04542 Sigma-70 region 2 BA953_06745 PF08281 Sigma-70, region 4 BA953_06750 PF02910 Fumarate reductase flavoprotein C-term BA953_06750 PF00890 FAD binding domain BA953_06760 PF03937 Flavinator of succinate dehydrogenase BA953_06780 PF01494 FAD binding domain BA953_06785 PF01494 FAD binding domain BA953_06795 PF05164 Cell division protein ZapA BA953_06805 PF01812 5-formyltetrahydrofolate cyclo-ligase family BA953_06810 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BA953_06815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BA953_06815 PF01842 ACT domain BA953_06815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BA953_06820 PF07690 Major Facilitator Superfamily BA953_06825 PF03009 Glycerophosphoryl diester phosphodiesterase family BA953_06830 PF10369 Small subunit of acetolactate synthase BA953_06835 PF00205 Thiamine pyrophosphate enzyme, central domain BA953_06835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BA953_06835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BA953_06840 PF00501 AMP-binding enzyme BA953_06845 PF03466 LysR substrate binding domain BA953_06845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_06865 PF08502 LeuA allosteric (dimerisation) domain BA953_06865 PF00682 HMGL-like BA953_06870 PF00180 Isocitrate/isopropylmalate dehydrogenase BA953_06875 PF00330 Aconitase family (aconitate hydratase) BA953_06950 PF02664 S-Ribosylhomocysteinase (LuxS) BA953_06960 PF04262 Glutamate-cysteine ligase BA953_06965 PF05193 Peptidase M16 inactive domain BA953_06965 PF00675 Insulinase (Peptidase family M16) BA953_06970 PF09335 SNARE associated Golgi protein BA953_06975 PF00107 Zinc-binding dehydrogenase BA953_06975 PF16884 N-terminal domain of oxidoreductase BA953_06980 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit BA953_06985 PF02436 Conserved carboxylase domain BA953_06985 PF00364 Biotin-requiring enzyme BA953_06985 PF00682 HMGL-like BA953_06990 PF04277 Oxaloacetate decarboxylase, gamma chain BA953_07035 PF02599 Global regulator protein family BA953_07040 PF13840 ACT domain BA953_07040 PF01842 ACT domain BA953_07040 PF00696 Amino acid kinase family BA953_07045 PF01411 tRNA synthetases class II (A) BA953_07045 PF02272 DHHA1 domain BA953_07045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BA953_07050 PF02631 RecX family BA953_07055 PF00154 recA bacterial DNA recombination protein BA953_07060 PF02464 Competence-damaged protein BA953_07065 PF00488 MutS domain V BA953_07065 PF05190 MutS family domain IV BA953_07065 PF01624 MutS domain I BA953_07065 PF05188 MutS domain II BA953_07065 PF05192 MutS domain III BA953_07070 PF03739 Lipopolysaccharide export system permease LptF/LptG BA953_07075 PF03739 Lipopolysaccharide export system permease LptF/LptG BA953_07080 PF00883 Cytosol aminopeptidase family, catalytic domain BA953_07080 PF02789 Cytosol aminopeptidase family, N-terminal domain BA953_07085 PF04364 DNA polymerase III chi subunit, HolC BA953_07090 PF10458 Valyl tRNA synthetase tRNA binding arm BA953_07090 PF00133 tRNA synthetases class I (I, L, M and V) BA953_07090 PF08264 Anticodon-binding domain of tRNA BA953_07100 PF05987 Bacterial protein of unknown function (DUF898) BA953_07110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BA953_07110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BA953_07115 PF00849 RNA pseudouridylate synthase BA953_07125 PF18337 RapA N-terminal Tudor like domain BA953_07125 PF00271 Helicase conserved C-terminal domain BA953_07125 PF18339 RapA N-terminal Tudor like domain 1 BA953_07125 PF00176 SNF2 family N-terminal domain BA953_07125 PF12137 RNA polymerase recycling family C-terminal BA953_07130 PF02562 PhoH-like protein BA953_07130 PF13638 PIN domain BA953_07135 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BA953_07135 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BA953_07140 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BA953_07140 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BA953_07145 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BA953_07145 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BA953_07150 PF01042 Endoribonuclease L-PSP BA953_07160 PF00056 lactate/malate dehydrogenase, NAD binding domain BA953_07160 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BA953_07170 PF16868 NMT1-like family BA953_07180 PF00582 Universal stress protein family BA953_07195 PF06877 Regulator of ribonuclease activity B BA953_07205 PF01553 Acyltransferase BA953_07210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BA953_07215 PF01722 BolA-like protein BA953_07225 PF05494 MlaC protein BA953_07230 PF02470 MlaD protein BA953_07235 PF02405 Permease MlaE BA953_07240 PF00005 ABC transporter BA953_07245 PF01699 Sodium/calcium exchanger protein BA953_07250 PF00571 CBS domain BA953_07250 PF01380 SIS domain BA953_07265 PF03968 OstA-like protein BA953_07270 PF00005 ABC transporter BA953_07270 PF12399 Branched-chain amino acid ATP-binding cassette transporter BA953_07275 PF00309 Sigma-54 factor, Activator interacting domain (AID) BA953_07275 PF04963 Sigma-54 factor, core binding domain BA953_07275 PF04552 Sigma-54, DNA binding domain BA953_07280 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BA953_07285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BA953_07290 PF03668 P-loop ATPase protein family BA953_07295 PF00381 PTS HPr component phosphorylation site BA953_07300 PF01769 Divalent cation transporter BA953_07300 PF00571 CBS domain BA953_07300 PF03448 MgtE intracellular N domain BA953_07305 PF00809 Pterin binding enzyme BA953_07305 PF02965 Vitamin B12 dependent methionine synthase, activation domain BA953_07305 PF02574 Homocysteine S-methyltransferase BA953_07305 PF02607 B12 binding domain BA953_07305 PF02310 B12 binding domain BA953_07310 PF00999 Sodium/hydrogen exchanger family BA953_07365 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BA953_07365 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BA953_07370 PF00175 Oxidoreductase NAD-binding domain BA953_07370 PF00667 FAD binding domain BA953_07370 PF00258 Flavodoxin BA953_07390 PF01207 Dihydrouridine synthase (Dus) BA953_07400 PF00072 Response regulator receiver domain BA953_07405 PF00512 His Kinase A (phospho-acceptor) domain BA953_07405 PF00672 HAMP domain BA953_07405 PF01627 Hpt domain BA953_07405 PF00072 Response regulator receiver domain BA953_07405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_07405 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BA953_07410 PF01475 Ferric uptake regulator family BA953_07425 PF02080 TrkA-C domain BA953_07425 PF03600 Citrate transporter BA953_07430 PF00009 Elongation factor Tu GTP binding domain BA953_07435 PF01507 Phosphoadenosine phosphosulfate reductase family BA953_07440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BA953_07440 PF14824 Sirohaem biosynthesis protein central BA953_07440 PF10414 Sirohaem synthase dimerisation region BA953_07445 PF00149 Calcineurin-like phosphoesterase BA953_07445 PF02872 5'-nucleotidase, C-terminal domain BA953_07455 PF13673 Acetyltransferase (GNAT) domain BA953_07470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BA953_07470 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BA953_07480 PF01196 Ribosomal protein L17 BA953_07490 PF00163 Ribosomal protein S4/S9 N-terminal domain BA953_07490 PF01479 S4 domain BA953_07495 PF00411 Ribosomal protein S11 BA953_07500 PF00416 Ribosomal protein S13/S18 BA953_07505 PF00444 Ribosomal protein L36 BA953_07510 PF00344 SecY translocase BA953_07520 PF00327 Ribosomal protein L30p/L7e BA953_07525 PF03719 Ribosomal protein S5, C-terminal domain BA953_07525 PF00333 Ribosomal protein S5, N-terminal domain BA953_07530 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BA953_07535 PF00347 Ribosomal protein L6 BA953_07540 PF00410 Ribosomal protein S8 BA953_07545 PF00253 Ribosomal protein S14p/S29e BA953_07550 PF00281 Ribosomal protein L5 BA953_07550 PF00673 ribosomal L5P family C-terminus BA953_07555 PF00467 KOW motif BA953_07555 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BA953_07560 PF00238 Ribosomal protein L14p/L23e BA953_07565 PF00366 Ribosomal protein S17 BA953_07570 PF00831 Ribosomal L29 protein BA953_07575 PF00252 Ribosomal protein L16p/L10e BA953_07580 PF00189 Ribosomal protein S3, C-terminal domain BA953_07580 PF07650 KH domain BA953_07585 PF00237 Ribosomal protein L22p/L17e BA953_07590 PF00203 Ribosomal protein S19 BA953_07595 PF03947 Ribosomal Proteins L2, C-terminal domain BA953_07595 PF00181 Ribosomal Proteins L2, RNA binding domain BA953_07600 PF00276 Ribosomal protein L23 BA953_07605 PF00573 Ribosomal protein L4/L1 family BA953_07615 PF00338 Ribosomal protein S10p/S20e BA953_07620 PF00588 SpoU rRNA Methylase family BA953_07620 PF08032 RNA 2'-O ribose methyltransferase substrate binding BA953_07625 PF00575 S1 RNA binding domain BA953_07625 PF17876 Cold shock domain BA953_07625 PF08206 Ribonuclease B OB domain BA953_07625 PF08461 Ribonuclease R winged-helix domain BA953_07625 PF00773 RNB domain BA953_07630 PF01979 Amidohydrolase family BA953_07635 PF08238 Sel1 repeat BA953_07640 PF00709 Adenylosuccinate synthetase BA953_07645 PF01112 Asparaginase BA953_07650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BA953_07660 PF00999 Sodium/hydrogen exchanger family BA953_07660 PF02254 TrkA-N domain BA953_07665 PF02525 Flavodoxin-like fold BA953_07670 PF00005 ABC transporter BA953_07670 PF12848 ABC transporter BA953_07680 PF00561 alpha/beta hydrolase fold BA953_07685 PF06794 Uncharacterised protein family (UPF0270) BA953_07690 PF00485 Phosphoribulokinase / Uridine kinase family BA953_07695 PF13545 Crp-like helix-turn-helix domain BA953_07695 PF00027 Cyclic nucleotide-binding domain BA953_07710 PF04958 Arginine N-succinyltransferase beta subunit BA953_07715 PF00202 Aminotransferase class-III BA953_07720 PF00117 Glutamine amidotransferase class-I BA953_07735 PF04186 FxsA cytoplasmic membrane protein BA953_07740 PF00206 Lyase BA953_07740 PF10415 Fumarase C C-terminus BA953_07745 PF03605 Anaerobic c4-dicarboxylate membrane transporter BA953_07750 PF03606 C4-dicarboxylate anaerobic carrier BA953_07760 PF00696 Amino acid kinase family BA953_07765 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BA953_07765 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BA953_07770 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BA953_07770 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BA953_07775 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BA953_07775 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BA953_07780 PF02863 Arginine repressor, C-terminal domain BA953_07780 PF01316 Arginine repressor, DNA binding domain BA953_07785 PF02683 Cytochrome C biogenesis protein transmembrane region BA953_07785 PF11412 Disulphide bond corrector protein DsbC BA953_07790 PF00072 Response regulator receiver domain BA953_07790 PF00196 Bacterial regulatory proteins, luxR family BA953_07795 PF01914 MarC family integral membrane protein BA953_07805 PF00474 Sodium:solute symporter family BA953_07815 PF00072 Response regulator receiver domain BA953_07815 PF00512 His Kinase A (phospho-acceptor) domain BA953_07815 PF09308 LuxQ, periplasmic BA953_07815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_07820 PF12832 MFS_1 like family BA953_07835 PF16177 Acetyl-coenzyme A synthetase N-terminus BA953_07835 PF00501 AMP-binding enzyme BA953_07835 PF13193 AMP-binding enzyme C-terminal domain BA953_07840 PF01220 Dehydroquinase class II BA953_07845 PF00364 Biotin-requiring enzyme BA953_07850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BA953_07850 PF00289 Biotin carboxylase, N-terminal domain BA953_07850 PF02785 Biotin carboxylase C-terminal domain BA953_07860 PF01207 Dihydrouridine synthase (Dus) BA953_07865 PF02954 Bacterial regulatory protein, Fis family BA953_07870 PF00990 Diguanylate cyclase, GGDEF domain BA953_07870 PF05230 MASE2 domain BA953_07875 PF13411 MerR HTH family regulatory protein BA953_07880 PF02142 MGS-like domain BA953_07880 PF01808 AICARFT/IMPCHase bienzyme BA953_07885 PF02844 Phosphoribosylglycinamide synthetase, N domain BA953_07885 PF02843 Phosphoribosylglycinamide synthetase, C domain BA953_07885 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BA953_07895 PF00216 Bacterial DNA-binding protein BA953_07900 PF00571 CBS domain BA953_07900 PF01595 Cyclin M transmembrane N-terminal domain BA953_07905 PF04222 Protein of unknown function (DUF416) BA953_07910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BA953_07915 PF03167 Uracil DNA glycosylase superfamily BA953_07920 PF00311 Phosphoenolpyruvate carboxylase BA953_07925 PF10400 Virulence activator alpha C-term BA953_07925 PF03551 Transcriptional regulator PadR-like family BA953_07930 PF06426 Serine acetyltransferase, N-terminal BA953_07930 PF00132 Bacterial transferase hexapeptide (six repeats) BA953_07935 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BA953_07935 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BA953_07940 PF02556 Preprotein translocase subunit SecB BA953_07945 PF00581 Rhodanese-like domain BA953_07970 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF BA953_07980 PF06082 Exopolysaccharide biosynthesis protein YbjH BA953_07985 PF00152 tRNA synthetases class II (D, K and N) BA953_07990 PF02910 Fumarate reductase flavoprotein C-term BA953_07990 PF00890 FAD binding domain BA953_07995 PF13085 2Fe-2S iron-sulfur cluster binding domain BA953_07995 PF13183 4Fe-4S dicluster domain BA953_08000 PF02300 Fumarate reductase subunit C BA953_08005 PF02313 Fumarate reductase subunit D BA953_08015 PF07724 AAA domain (Cdc48 subfamily) BA953_08015 PF00004 ATPase family associated with various cellular activities (AAA) BA953_08025 PF05036 Sporulation related domain BA953_08030 PF00356 Bacterial regulatory proteins, lacI family BA953_08035 PF00271 Helicase conserved C-terminal domain BA953_08035 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BA953_08035 PF18074 Primosomal protein N C-terminal domain BA953_08035 PF00270 DEAD/DEAH box helicase BA953_08035 PF17764 3′ DNA-binding domain (3′BD) BA953_08045 PF00390 Malic enzyme, N-terminal domain BA953_08045 PF03949 Malic enzyme, NAD binding domain BA953_08055 PF01053 Cys/Met metabolism PLP-dependent enzyme BA953_08060 PF00742 Homoserine dehydrogenase BA953_08060 PF03447 Homoserine dehydrogenase, NAD binding domain BA953_08060 PF00696 Amino acid kinase family BA953_08065 PF02219 Methylenetetrahydrofolate reductase BA953_08075 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BA953_08095 PF00118 TCP-1/cpn60 chaperonin family BA953_08100 PF00166 Chaperonin 10 Kd subunit BA953_08105 PF02706 Chain length determinant protein BA953_08120 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BA953_08120 PF01565 FAD binding domain BA953_08125 PF03099 Biotin/lipoate A/B protein ligase family BA953_08125 PF02237 Biotin protein ligase C terminal domain BA953_08125 PF08279 HTH domain BA953_08130 PF13091 PLD-like domain BA953_08135 PF00953 Glycosyl transferase family 4 BA953_08150 PF07940 Heparinase II/III-like protein BA953_08150 PF16889 Heparinase II/III N-terminus BA953_08155 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BA953_08155 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BA953_08160 PF00977 Histidine biosynthesis protein BA953_08165 PF00117 Glutamine amidotransferase class-I BA953_08175 PF13439 Glycosyltransferase Family 4 BA953_08175 PF00534 Glycosyl transferases group 1 BA953_08185 PF13537 Glutamine amidotransferase domain BA953_08185 PF00733 Asparagine synthase BA953_08200 PF01370 NAD dependent epimerase/dehydratase family BA953_08205 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BA953_08210 PF16363 GDP-mannose 4,6 dehydratase BA953_08215 PF00483 Nucleotidyl transferase BA953_08220 PF00970 Oxidoreductase FAD-binding domain BA953_08220 PF00175 Oxidoreductase NAD-binding domain BA953_08220 PF00111 2Fe-2S iron-sulfur cluster binding domain BA953_08225 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BA953_08225 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BA953_08225 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BA953_08230 PF02350 UDP-N-acetylglucosamine 2-epimerase BA953_08240 PF01370 NAD dependent epimerase/dehydratase family BA953_08245 PF00534 Glycosyl transferases group 1 BA953_08255 PF00132 Bacterial transferase hexapeptide (six repeats) BA953_08255 PF14602 Hexapeptide repeat of succinyl-transferase BA953_08255 PF12464 Maltose acetyltransferase BA953_08260 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BA953_08270 PF04488 Glycosyltransferase sugar-binding region containing DXD motif BA953_08275 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BA953_08295 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BA953_08300 PF00535 Glycosyl transferase family 2 BA953_08305 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BA953_08310 PF01467 Cytidylyltransferase-like BA953_08315 PF06827 Zinc finger found in FPG and IleRS BA953_08315 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BA953_08315 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BA953_08325 PF00471 Ribosomal protein L33 BA953_08335 PF04002 RadC-like JAB domain BA953_08340 PF02441 Flavoprotein BA953_08340 PF04127 DNA / pantothenate metabolism flavoprotein BA953_08345 PF00440 Bacterial regulatory proteins, tetR family BA953_08350 PF03279 Bacterial lipid A biosynthesis acyltransferase BA953_08355 PF03279 Bacterial lipid A biosynthesis acyltransferase BA953_08360 PF00156 Phosphoribosyl transferase domain BA953_08365 PF01138 3' exoribonuclease family, domain 1 BA953_08365 PF03725 3' exoribonuclease family, domain 2 BA953_08370 PF03755 YicC-like family, N-terminal region BA953_08370 PF08340 Domain of unknown function (DUF1732) BA953_08375 PF00860 Permease family BA953_08385 PF02472 Biopolymer transport protein ExbD/TolR BA953_08390 PF01618 MotA/TolQ/ExbB proton channel family BA953_08405 PF00593 TonB dependent receptor BA953_08405 PF07715 TonB-dependent Receptor Plug Domain BA953_08415 PF08281 Sigma-70, region 4 BA953_08415 PF04542 Sigma-70 region 2 BA953_08420 PF00625 Guanylate kinase BA953_08425 PF01192 RNA polymerase Rpb6 BA953_08430 PF13291 ACT domain BA953_08430 PF04607 Region found in RelA / SpoT proteins BA953_08430 PF02824 TGS domain BA953_08435 PF12105 SpoU, rRNA methylase, C-terminal BA953_08435 PF00588 SpoU rRNA Methylase family BA953_08440 PF00270 DEAD/DEAH box helicase BA953_08440 PF00271 Helicase conserved C-terminal domain BA953_08440 PF17191 RecG wedge domain BA953_08445 PF00459 Inositol monophosphatase family BA953_08450 PF00293 NUDIX domain BA953_08455 PF01521 Iron-sulphur cluster biosynthesis BA953_08455 PF01106 NifU-like domain BA953_08460 PF00156 Phosphoribosyl transferase domain BA953_08465 PF00561 alpha/beta hydrolase fold BA953_08475 PF17674 HHH domain BA953_08475 PF09371 Tex-like protein N-terminal domain BA953_08475 PF16921 Tex protein YqgF-like domain BA953_08475 PF00575 S1 RNA binding domain BA953_08485 PF01272 Transcription elongation factor, GreA/GreB, C-term BA953_08485 PF03449 Transcription elongation factor, N-terminal BA953_08490 PF00486 Transcriptional regulatory protein, C terminal BA953_08490 PF00072 Response regulator receiver domain BA953_08495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_08495 PF00512 His Kinase A (phospho-acceptor) domain BA953_08495 PF00672 HAMP domain BA953_08505 PF04612 Type II secretion system (T2SS), protein M BA953_08510 PF12693 GspL periplasmic domain BA953_08510 PF05134 Type II secretion system (T2SS), protein L BA953_08515 PF03934 Type II secretion system (T2SS), protein K BA953_08520 PF07963 Prokaryotic N-terminal methylation motif BA953_08520 PF11612 Type II secretion system (T2SS), protein J BA953_08525 PF02501 Type II secretion system (T2SS), protein I BA953_08525 PF07963 Prokaryotic N-terminal methylation motif BA953_08530 PF12019 Type II transport protein GspH BA953_08535 PF07963 Prokaryotic N-terminal methylation motif BA953_08535 PF08334 Type II secretion system (T2SS), protein G BA953_08540 PF00482 Type II secretion system (T2SS), protein F BA953_08545 PF00437 Type II/IV secretion system protein BA953_08550 PF03958 Bacterial type II/III secretion system short domain BA953_08550 PF00263 Bacterial type II and III secretion system protein BA953_08555 PF11356 Type II secretion system protein C BA953_08560 PF01479 S4 domain BA953_08565 PF01430 Hsp33 protein BA953_08570 PF01293 Phosphoenolpyruvate carboxykinase BA953_08580 PF09500 Putative thioesterase (yiiD_Cterm) BA953_08580 PF00583 Acetyltransferase (GNAT) family BA953_08585 PF02580 D-Tyr-tRNA(Tyr) deacylase BA953_08605 PF00120 Glutamine synthetase, catalytic domain BA953_08605 PF03951 Glutamine synthetase, beta-Grasp domain BA953_08610 PF00989 PAS fold BA953_08610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_08610 PF00512 His Kinase A (phospho-acceptor) domain BA953_08615 PF00072 Response regulator receiver domain BA953_08615 PF00158 Sigma-54 interaction domain BA953_08615 PF02954 Bacterial regulatory protein, Fis family BA953_08620 PF00563 EAL domain BA953_08620 PF03707 Bacterial signalling protein N terminal repeat BA953_08620 PF00990 Diguanylate cyclase, GGDEF domain BA953_08625 PF00962 Adenosine/AMP deaminase BA953_08665 PF00132 Bacterial transferase hexapeptide (six repeats) BA953_08670 PF07369 Protein of unknown function (DUF1488) BA953_08675 PF08501 Shikimate dehydrogenase substrate binding domain BA953_08675 PF01488 Shikimate / quinate 5-dehydrogenase BA953_08675 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BA953_08680 PF01218 Coproporphyrinogen III oxidase BA953_08685 PF01300 Telomere recombination BA953_08690 PF00731 AIR carboxylase BA953_08695 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BA953_08695 PF02222 ATP-grasp domain BA953_08700 PF01396 Topoisomerase DNA binding C4 zinc finger BA953_08705 PF04361 Protein of unknown function (DUF494) BA953_08710 PF02481 DNA recombination-mediator protein A BA953_08710 PF17782 DprA winged helix domain BA953_08715 PF01327 Polypeptide deformylase BA953_08720 PF02911 Formyl transferase, C-terminal domain BA953_08720 PF00551 Formyl transferase BA953_08725 PF01029 NusB family BA953_08725 PF01189 16S rRNA methyltransferase RsmB/F BA953_08730 PF02080 TrkA-C domain BA953_08730 PF02254 TrkA-N domain BA953_08735 PF02386 Cation transport protein BA953_08745 PF03006 Haemolysin-III related BA953_08750 PF07070 SpoOM protein BA953_08760 PF06288 Protein of unknown function (DUF1040) BA953_08765 PF12801 4Fe-4S binding domain BA953_08765 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase BA953_08765 PF13746 4Fe-4S dicluster domain BA953_08880 PF00717 Peptidase S24-like BA953_08880 PF01381 Helix-turn-helix BA953_08885 PF02899 Phage integrase, N-terminal SAM-like domain BA953_08885 PF00589 Phage integrase family BA953_08890 PF01636 Phosphotransferase enzyme family BA953_08895 PF01323 DSBA-like thioredoxin domain BA953_08900 PF01609 Transposase DDE domain BA953_08900 PF13006 Insertion element 4 transposase N-terminal BA953_08905 PF01553 Acyltransferase BA953_08915 PF01078 Magnesium chelatase, subunit ChlI BA953_08915 PF13335 Magnesium chelatase, subunit ChlI C-terminal BA953_08920 PF00205 Thiamine pyrophosphate enzyme, central domain BA953_08920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BA953_08920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BA953_08930 PF01063 Amino-transferase class IV BA953_08935 PF00920 Dehydratase family BA953_08940 PF00291 Pyridoxal-phosphate dependent enzyme BA953_08940 PF00585 C-terminal regulatory domain of Threonine dehydratase BA953_08945 PF08240 Alcohol dehydrogenase GroES-like domain BA953_08945 PF00107 Zinc-binding dehydrogenase BA953_08950 PF03466 LysR substrate binding domain BA953_08950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_08960 PF01206 Sulfurtransferase TusA BA953_08970 PF01169 Uncharacterized protein family UPF0016 BA953_08980 PF05746 DALR anticodon binding domain BA953_08980 PF02092 Glycyl-tRNA synthetase beta subunit BA953_08985 PF00155 Aminotransferase class I and II BA953_08990 PF00011 Hsp20/alpha crystallin family BA953_08995 PF00204 DNA gyrase B BA953_08995 PF00986 DNA gyrase B subunit, carboxyl terminus BA953_08995 PF18053 DNA gyrase B subunit insert domain BA953_08995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_08995 PF01751 Toprim domain BA953_09000 PF02463 RecF/RecN/SMC N terminal domain BA953_09005 PF02768 DNA polymerase III beta subunit, C-terminal domain BA953_09005 PF02767 DNA polymerase III beta subunit, central domain BA953_09005 PF00712 DNA polymerase III beta subunit, N-terminal domain BA953_09010 PF08299 Bacterial dnaA protein helix-turn-helix BA953_09010 PF00308 Bacterial dnaA protein BA953_09010 PF11638 DnaA N-terminal domain BA953_09015 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA953_09020 PF00528 Binding-protein-dependent transport system inner membrane component BA953_09025 PF00005 ABC transporter BA953_09035 PF00825 Ribonuclease P BA953_09040 PF14849 YidC periplasmic domain BA953_09040 PF02096 60Kd inner membrane protein BA953_09045 PF01926 50S ribosome-binding GTPase BA953_09045 PF12631 MnmE helical domain BA953_09045 PF10396 GTP-binding protein TrmE N-terminus BA953_09050 PF00258 Flavodoxin BA953_09055 PF01134 Glucose inhibited division protein A BA953_09055 PF13932 GidA associated domain BA953_09065 PF13614 AAA domain BA953_09070 PF02195 ParB-like nuclease domain BA953_09070 PF17762 HTH domain found in ParB protein BA953_09075 PF03899 ATP synthase I chain BA953_09080 PF00119 ATP synthase A chain BA953_09085 PF00137 ATP synthase subunit C BA953_09090 PF00430 ATP synthase B/B' CF(0) BA953_09095 PF00213 ATP synthase delta (OSCP) subunit BA953_09100 PF02874 ATP synthase alpha/beta family, beta-barrel domain BA953_09100 PF00306 ATP synthase alpha/beta chain, C terminal domain BA953_09100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BA953_09105 PF00231 ATP synthase BA953_09110 PF02874 ATP synthase alpha/beta family, beta-barrel domain BA953_09110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BA953_09115 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BA953_09115 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BA953_09120 PF12804 MobA-like NTP transferase domain BA953_09120 PF00132 Bacterial transferase hexapeptide (six repeats) BA953_09125 PF00528 Binding-protein-dependent transport system inner membrane component BA953_09130 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA953_09135 PF07690 Major Facilitator Superfamily BA953_09140 PF03466 LysR substrate binding domain BA953_09140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_09145 PF00990 Diguanylate cyclase, GGDEF domain BA953_09150 PF00108 Thiolase, N-terminal domain BA953_09150 PF02803 Thiolase, C-terminal domain BA953_09155 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BA953_09155 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BA953_09155 PF00378 Enoyl-CoA hydratase/isomerase BA953_09160 PF09186 Domain of unknown function (DUF1949) BA953_09160 PF01205 Uncharacterized protein family UPF0029 BA953_09165 PF02386 Cation transport protein BA953_09170 PF12724 Flavodoxin domain BA953_09220 PF07732 Multicopper oxidase BA953_09220 PF07731 Multicopper oxidase BA953_09220 PF00394 Multicopper oxidase BA953_09225 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BA953_09230 PF01964 Radical SAM ThiC family BA953_09230 PF13667 ThiC-associated domain BA953_09235 PF02581 Thiamine monophosphate synthase BA953_09240 PF00899 ThiF family BA953_09250 PF05690 Thiazole biosynthesis protein ThiG BA953_09255 PF06968 Biotin and Thiamin Synthesis associated domain BA953_09255 PF04055 Radical SAM superfamily BA953_09260 PF00557 Metallopeptidase family M24 BA953_09260 PF01321 Creatinase/Prolidase N-terminal domain BA953_09260 PF00557 Metallopeptidase family M24 BA953_09260 PF01321 Creatinase/Prolidase N-terminal domain BA953_09265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_09265 PF03466 LysR substrate binding domain BA953_09270 PF07690 Major Facilitator Superfamily BA953_09280 PF01037 Lrp/AsnC ligand binding domain BA953_09285 PF00990 Diguanylate cyclase, GGDEF domain BA953_09285 PF08448 PAS fold BA953_09285 PF00563 EAL domain BA953_09290 PF04445 Putative SAM-dependent methyltransferase BA953_09300 PF00892 EamA-like transporter family BA953_09305 PF00582 Universal stress protein family BA953_09310 PF00210 Ferritin-like domain BA953_09315 PF10625 Universal stress protein B (UspB) BA953_09325 PF03440 Aerolysin/Pertussis toxin (APT) domain BA953_09325 PF01117 Aerolysin toxin BA953_09345 PF12833 Helix-turn-helix domain BA953_09345 PF12852 Cupin BA953_09350 PF08668 HDOD domain BA953_09360 PF02646 RmuC family BA953_09365 PF01209 ubiE/COQ5 methyltransferase family BA953_09370 PF02036 SCP-2 sterol transfer family BA953_09375 PF03109 ABC1 family BA953_09385 PF02416 mttA/Hcf106 family BA953_09390 PF00902 Sec-independent protein translocase protein (TatC) BA953_09395 PF01026 TatD related DNase BA953_09400 PF00490 Delta-aminolevulinic acid dehydratase BA953_09410 PF00476 DNA polymerase family A BA953_09410 PF01612 3'-5' exonuclease BA953_09410 PF01367 5'-3' exonuclease, C-terminal SAM fold BA953_09410 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BA953_09415 PF01926 50S ribosome-binding GTPase BA953_09420 PF00034 Cytochrome c BA953_09430 PF04220 Der GTPase activator (YihI) BA953_09435 PF10675 Protein of unknown function (DUF2489) BA953_09440 PF06969 HemN C-terminal domain BA953_09440 PF04055 Radical SAM superfamily BA953_09445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_09445 PF03466 LysR substrate binding domain BA953_09450 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BA953_09450 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BA953_09455 PF04380 Membrane fusogenic activity BA953_09460 PF00873 AcrB/AcrD/AcrF family BA953_09465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_09470 PF00440 Bacterial regulatory proteins, tetR family BA953_09475 PF13361 UvrD-like helicase C-terminal domain BA953_09475 PF00580 UvrD/REP helicase N-terminal domain BA953_09480 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BA953_09510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA953_09510 PF00005 ABC transporter BA953_09515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA953_09525 PF12911 N-terminal TM domain of oligopeptide transport permease C BA953_09525 PF00528 Binding-protein-dependent transport system inner membrane component BA953_09540 PF00072 Response regulator receiver domain BA953_09540 PF00486 Transcriptional regulatory protein, C terminal BA953_09555 PF00083 Sugar (and other) transporter BA953_09565 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BA953_09565 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BA953_09575 PF17678 Glycosyl hydrolase family 92 N-terminal domain BA953_09575 PF07971 Glycosyl hydrolase family 92 BA953_09585 PF17678 Glycosyl hydrolase family 92 N-terminal domain BA953_09585 PF07971 Glycosyl hydrolase family 92 BA953_09590 PF12833 Helix-turn-helix domain BA953_09600 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BA953_09610 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA953_09610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BA953_09615 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BA953_09620 PF01432 Peptidase family M3 BA953_09635 PF05114 Protein of unknown function (DUF692) BA953_09645 PF13361 UvrD-like helicase C-terminal domain BA953_09645 PF00580 UvrD/REP helicase N-terminal domain BA953_09655 PF08534 Redoxin BA953_09665 PF01810 LysE type translocator BA953_09675 PF00892 EamA-like transporter family BA953_09680 PF09382 RQC domain BA953_09680 PF00570 HRDC domain BA953_09680 PF16124 RecQ zinc-binding BA953_09680 PF00270 DEAD/DEAH box helicase BA953_09680 PF00271 Helicase conserved C-terminal domain BA953_09690 PF02592 Putative vitamin uptake transporter BA953_09695 PF02541 Ppx/GppA phosphatase family BA953_09700 PF00270 DEAD/DEAH box helicase BA953_09700 PF00271 Helicase conserved C-terminal domain BA953_09705 PF00085 Thioredoxin BA953_09710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BA953_09710 PF07497 Rho termination factor, RNA-binding domain BA953_09710 PF07498 Rho termination factor, N-terminal domain BA953_09720 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BA953_09725 PF00175 Oxidoreductase NAD-binding domain BA953_09725 PF00111 2Fe-2S iron-sulfur cluster binding domain BA953_09725 PF00970 Oxidoreductase FAD-binding domain BA953_09730 PF00175 Oxidoreductase NAD-binding domain BA953_09780 PF07219 HemY protein N-terminus BA953_09785 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase BA953_09790 PF02602 Uroporphyrinogen-III synthase HemD BA953_09800 PF01295 Adenylate cyclase, class-I BA953_09800 PF12633 Adenylate cyclase NT domain BA953_09805 PF01491 Frataxin-like domain BA953_09815 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BA953_09815 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BA953_09820 PF01678 Diaminopimelate epimerase BA953_09830 PF00589 Phage integrase family BA953_09830 PF02899 Phage integrase, N-terminal SAM-like domain BA953_09835 PF13419 Haloacid dehalogenase-like hydrolase BA953_09840 PF10442 FIST C domain BA953_09840 PF08495 FIST N domain BA953_09840 PF00990 Diguanylate cyclase, GGDEF domain BA953_09840 PF00563 EAL domain BA953_09870 PF01810 LysE type translocator BA953_09875 PF00563 EAL domain BA953_09875 PF08668 HDOD domain BA953_09880 PF01022 Bacterial regulatory protein, arsR family BA953_09885 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BA953_09885 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BA953_09930 PF01914 MarC family integral membrane protein BA953_09945 PF02881 SRP54-type protein, helical bundle domain BA953_09945 PF00448 SRP54-type protein, GTPase domain BA953_09950 PF00005 ABC transporter BA953_09955 PF18075 FtsX extracellular domain BA953_09960 PF04545 Sigma-70, region 4 BA953_09960 PF04542 Sigma-70 region 2 BA953_09960 PF00140 Sigma-70 factor, region 1.2 BA953_09965 PF00581 Rhodanese-like domain BA953_09970 PF01694 Rhomboid family BA953_09970 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease BA953_09975 PF03748 Flagellar basal body-associated protein FliL BA953_09980 PF04345 Chorismate lyase BA953_09985 PF01040 UbiA prenyltransferase family BA953_09990 PF01553 Acyltransferase BA953_09995 PF01219 Prokaryotic diacylglycerol kinase BA953_10000 PF00717 Peptidase S24-like BA953_10000 PF01726 LexA DNA binding domain BA953_10010 PF01554 MatE BA953_10015 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA953_10015 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BA953_10020 PF00440 Bacterial regulatory proteins, tetR family BA953_10030 PF05958 tRNA (Uracil-5-)-methyltransferase BA953_10035 PF07715 TonB-dependent Receptor Plug Domain BA953_10035 PF00593 TonB dependent receptor BA953_10045 PF01177 Asp/Glu/Hydantoin racemase BA953_10135 PF01546 Peptidase family M20/M25/M40 BA953_10135 PF07687 Peptidase dimerisation domain BA953_10140 PF02774 Semialdehyde dehydrogenase, dimerisation domain BA953_10140 PF01118 Semialdehyde dehydrogenase, NAD binding domain BA953_10145 PF00696 Amino acid kinase family BA953_10150 PF00764 Arginosuccinate synthase BA953_10155 PF14698 Argininosuccinate lyase C-terminal BA953_10155 PF00583 Acetyltransferase (GNAT) family BA953_10155 PF00206 Lyase BA953_10165 PF01042 Endoribonuclease L-PSP BA953_10170 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BA953_10170 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA953_10175 PF00462 Glutaredoxin BA953_10175 PF08534 Redoxin BA953_10180 PF03466 LysR substrate binding domain BA953_10180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_10185 PF17092 Penicillin-binding protein OB-like domain BA953_10185 PF00905 Penicillin binding protein transpeptidase domain BA953_10185 PF00912 Transglycosylase BA953_10215 PF01202 Shikimate kinase BA953_10230 PF02086 D12 class N6 adenine-specific DNA methyltransferase BA953_10235 PF00834 Ribulose-phosphate 3 epimerase family BA953_10240 PF13419 Haloacid dehalogenase-like hydrolase BA953_10245 PF00579 tRNA synthetases class I (W and Y) BA953_10250 PF00588 SpoU rRNA Methylase family BA953_10255 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BA953_10255 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BA953_10260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_10260 PF00512 His Kinase A (phospho-acceptor) domain BA953_10260 PF00672 HAMP domain BA953_10260 PF16527 Two-component sensor protein CpxA, periplasmic domain BA953_10265 PF00072 Response regulator receiver domain BA953_10265 PF00486 Transcriptional regulatory protein, C terminal BA953_10270 PF07813 LTXXQ motif family protein BA953_10275 PF01545 Cation efflux family BA953_10275 PF16916 Dimerisation domain of Zinc Transporter BA953_10280 PF00365 Phosphofructokinase BA953_10285 PF02308 MgtC family BA953_10295 PF04055 Radical SAM superfamily BA953_10300 PF09285 Elongation factor P, C-terminal BA953_10300 PF08207 Elongation factor P (EF-P) KOW-like domain BA953_10300 PF01132 Elongation factor P (EF-P) OB domain BA953_10305 PF01040 UbiA prenyltransferase family BA953_10310 PF03737 Aldolase/RraA BA953_10315 PF01554 MatE BA953_10320 PF00121 Triosephosphate isomerase BA953_10335 PF00485 Phosphoribulokinase / Uridine kinase family BA953_10360 PF03144 Elongation factor Tu domain 2 BA953_10360 PF00009 Elongation factor Tu GTP binding domain BA953_10360 PF03143 Elongation factor Tu C-terminal domain BA953_10370 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BA953_10375 PF02357 Transcription termination factor nusG BA953_10375 PF00467 KOW motif BA953_10380 PF03946 Ribosomal protein L11, N-terminal domain BA953_10380 PF00298 Ribosomal protein L11, RNA binding domain BA953_10385 PF00687 Ribosomal protein L1p/L10e family BA953_10390 PF00466 Ribosomal protein L10 BA953_10395 PF16320 Ribosomal protein L7/L12 dimerisation domain BA953_10395 PF00542 Ribosomal protein L7/L12 C-terminal domain BA953_10400 PF04560 RNA polymerase Rpb2, domain 7 BA953_10400 PF10385 RNA polymerase beta subunit external 1 domain BA953_10400 PF04565 RNA polymerase Rpb2, domain 3 BA953_10400 PF04561 RNA polymerase Rpb2, domain 2 BA953_10400 PF04563 RNA polymerase beta subunit BA953_10400 PF00562 RNA polymerase Rpb2, domain 6 BA953_10405 PF04998 RNA polymerase Rpb1, domain 5 BA953_10405 PF04997 RNA polymerase Rpb1, domain 1 BA953_10405 PF00623 RNA polymerase Rpb1, domain 2 BA953_10405 PF04983 RNA polymerase Rpb1, domain 3 BA953_10405 PF05000 RNA polymerase Rpb1, domain 4 BA953_10410 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ BA953_10415 PF00293 NUDIX domain BA953_10415 PF09297 NADH pyrophosphatase zinc ribbon domain BA953_10420 PF01208 Uroporphyrinogen decarboxylase (URO-D) BA953_10425 PF00440 Bacterial regulatory proteins, tetR family BA953_10425 PF08360 QacR-like protein, C-terminal region BA953_10435 PF01551 Peptidase family M23 BA953_10440 PF01676 Metalloenzyme superfamily BA953_10440 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BA953_10450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_10450 PF17200 Single Cache domain 2 BA953_10450 PF00672 HAMP domain BA953_10455 PF02080 TrkA-C domain BA953_10455 PF03600 Citrate transporter BA953_10460 PF02666 Phosphatidylserine decarboxylase BA953_10465 PF03193 RsgA GTPase BA953_10470 PF00929 Exonuclease BA953_10525 PF08331 Domain of unknown function (DUF1730) BA953_10530 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BA953_10535 PF01520 N-acetylmuramoyl-L-alanine amidase BA953_10540 PF08676 MutL C terminal dimerisation domain BA953_10540 PF01119 DNA mismatch repair protein, C-terminal domain BA953_10550 PF17209 Hfq protein BA953_10555 PF13167 GTP-binding GTPase N-terminal BA953_10555 PF01926 50S ribosome-binding GTPase BA953_10555 PF16360 GTP-binding GTPase Middle Region BA953_10560 PF12221 Bacterial membrane protein N terminal BA953_10560 PF01145 SPFH domain / Band 7 family BA953_10565 PF01145 SPFH domain / Band 7 family BA953_10570 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) BA953_10585 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BA953_10585 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BA953_10590 PF08348 YheO-like PAS domain BA953_10590 PF13309 HTH domain BA953_10595 PF02635 DsrE/DsrF-like family BA953_10600 PF02635 DsrE/DsrF-like family BA953_10605 PF04077 DsrH like protein BA953_10610 PF00164 Ribosomal protein S12/S23 BA953_10615 PF00177 Ribosomal protein S7p/S5e BA953_10620 PF00679 Elongation factor G C-terminus BA953_10620 PF03764 Elongation factor G, domain IV BA953_10620 PF00009 Elongation factor Tu GTP binding domain BA953_10620 PF14492 Elongation Factor G, domain II BA953_10620 PF03144 Elongation factor Tu domain 2 BA953_10625 PF00009 Elongation factor Tu GTP binding domain BA953_10625 PF03143 Elongation factor Tu C-terminal domain BA953_10625 PF03144 Elongation factor Tu domain 2 BA953_10630 PF00210 Ferritin-like domain BA953_10635 PF01250 Ribosomal protein S6 BA953_10640 PF01084 Ribosomal protein S18 BA953_10645 PF03948 Ribosomal protein L9, C-terminal domain BA953_10645 PF01281 Ribosomal protein L9, N-terminal domain BA953_10655 PF03796 DnaB-like helicase C terminal domain BA953_10655 PF00772 DnaB-like helicase N terminal domain BA953_10660 PF01168 Alanine racemase, N-terminal domain BA953_10660 PF00842 Alanine racemase, C-terminal domain BA953_10665 PF01894 Uncharacterised protein family UPF0047 BA953_10670 PF00342 Phosphoglucose isomerase BA953_10690 PF00005 ABC transporter BA953_10705 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) BA953_10715 PF01625 Peptide methionine sulfoxide reductase BA953_10720 PF17243 POTRA domain TamA domain 1 BA953_10720 PF07244 Surface antigen variable number repeat BA953_10720 PF01103 Surface antigen BA953_10725 PF04357 TamB, inner membrane protein subunit of TAM complex BA953_10730 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BA953_10735 PF00719 Inorganic pyrophosphatase BA953_10740 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BA953_10745 PF08245 Mur ligase middle domain BA953_10745 PF01225 Mur ligase family, catalytic domain BA953_10745 PF02875 Mur ligase family, glutamate ligase domain BA953_10750 PF02441 Flavoprotein BA953_10760 PF00528 Binding-protein-dependent transport system inner membrane component BA953_10765 PF00005 ABC transporter BA953_10770 PF04751 Protein of unknown function (DUF615) BA953_10775 PF01523 Putative modulator of DNA gyrase BA953_10780 PF00696 Amino acid kinase family BA953_10780 PF01842 ACT domain BA953_10785 PF00266 Aminotransferase class-V BA953_10795 PF17760 UvrA interaction domain BA953_10795 PF17755 UvrA DNA-binding domain BA953_10795 PF00005 ABC transporter BA953_10800 PF00483 Nucleotidyl transferase BA953_10805 PF00196 Bacterial regulatory proteins, luxR family BA953_10810 PF00436 Single-strand binding protein family BA953_10815 PF00563 EAL domain BA953_10815 PF17157 Gammaproteobacterial periplasmic sensor domain BA953_10815 PF00990 Diguanylate cyclase, GGDEF domain BA953_10835 PF03958 Bacterial type II/III secretion system short domain BA953_10835 PF00263 Bacterial type II and III secretion system protein BA953_10840 PF01471 Putative peptidoglycan binding domain BA953_10840 PF13401 AAA domain BA953_10850 PF00437 Type II/IV secretion system protein BA953_10850 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BA953_10855 PF00482 Type II secretion system (T2SS), protein F BA953_10865 PF07963 Prokaryotic N-terminal methylation motif BA953_10865 PF00114 Pilin (bacterial filament) BA953_10870 PF07963 Prokaryotic N-terminal methylation motif BA953_10870 PF00114 Pilin (bacterial filament) BA953_10905 PF04085 rod shape-determining protein MreC BA953_10910 PF04093 rod shape-determining protein MreD BA953_10915 PF02545 Maf-like protein BA953_10920 PF10150 Ribonuclease E/G family BA953_10920 PF00575 S1 RNA binding domain BA953_10925 PF13116 Protein of unknown function BA953_10925 PF13502 AsmA-like C-terminal region BA953_10930 PF00795 Carbon-nitrogen hydrolase BA953_10935 PF01523 Putative modulator of DNA gyrase BA953_10985 PF01464 Transglycosylase SLT domain BA953_10985 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BA953_10990 PF04362 Bacterial Fe(2+) trafficking BA953_10995 PF00633 Helix-hairpin-helix motif BA953_10995 PF00730 HhH-GPD superfamily base excision DNA repair protein BA953_10995 PF14815 NUDIX domain BA953_11000 PF02390 Putative methyltransferase BA953_11005 PF04960 Glutaminase BA953_11010 PF04055 Radical SAM superfamily BA953_11010 PF06969 HemN C-terminal domain BA953_11015 PF01725 Ham1 family BA953_11025 PF02594 Uncharacterised ACR, YggU family COG1872 BA953_11030 PF02325 YGGT family BA953_11035 PF03807 NADP oxidoreductase coenzyme F420-dependent BA953_11035 PF14748 Pyrroline-5-carboxylate reductase dimerisation BA953_11040 PF01168 Alanine racemase, N-terminal domain BA953_11045 PF00437 Type II/IV secretion system protein BA953_11050 PF00437 Type II/IV secretion system protein BA953_11055 PF03652 Holliday junction resolvase BA953_11060 PF02622 Uncharacterized ACR, COG1678 BA953_11065 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BA953_11065 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BA953_11070 PF04452 RNA methyltransferase BA953_11075 PF04231 Endonuclease I BA953_11080 PF17283 SprT-like zinc ribbon domain BA953_11080 PF10263 SprT-like family BA953_11090 PF00438 S-adenosylmethionine synthetase, N-terminal domain BA953_11090 PF02772 S-adenosylmethionine synthetase, central domain BA953_11090 PF02773 S-adenosylmethionine synthetase, C-terminal domain BA953_11095 PF02779 Transketolase, pyrimidine binding domain BA953_11095 PF02780 Transketolase, C-terminal domain BA953_11095 PF00456 Transketolase, thiamine diphosphate binding domain BA953_11100 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BA953_11100 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BA953_11105 PF00162 Phosphoglycerate kinase BA953_11110 PF01116 Fructose-bisphosphate aldolase class-II BA953_11115 PF00924 Mechanosensitive ion channel BA953_11115 PF05552 Conserved TM helix BA953_11125 PF01810 LysE type translocator BA953_11130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_11130 PF03466 LysR substrate binding domain BA953_11135 PF04402 Protein of unknown function (DUF541) BA953_11140 PF00990 Diguanylate cyclase, GGDEF domain BA953_11140 PF17158 Membrane-associated sensor, integral membrane domain BA953_11150 PF02887 Pyruvate kinase, alpha/beta domain BA953_11150 PF00224 Pyruvate kinase, barrel domain BA953_11155 PF00455 DeoR C terminal sensor domain BA953_11155 PF08220 DeoR-like helix-turn-helix domain BA953_11160 PF01380 SIS domain BA953_11170 PF00072 Response regulator receiver domain BA953_11170 PF00486 Transcriptional regulatory protein, C terminal BA953_11175 PF00512 His Kinase A (phospho-acceptor) domain BA953_11175 PF00672 HAMP domain BA953_11175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_11180 PF03480 Bacterial extracellular solute-binding protein, family 7 BA953_11190 PF00348 Polyprenyl synthetase BA953_11195 PF00829 Ribosomal prokaryotic L21 protein BA953_11200 PF01016 Ribosomal L27 protein BA953_11205 PF01926 50S ribosome-binding GTPase BA953_11205 PF01018 GTP1/OBG BA953_11210 PF06738 Putative threonine/serine exporter BA953_11215 PF12821 Threonine/Serine exporter, ThrE BA953_11220 PF00186 Dihydrofolate reductase BA953_11225 PF00149 Calcineurin-like phosphoesterase BA953_11230 PF04379 ApaG domain BA953_11235 PF00398 Ribosomal RNA adenine dimethylase BA953_11240 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BA953_11245 PF09312 SurA N-terminal domain BA953_11250 PF03968 OstA-like protein BA953_11250 PF04453 LPS transport system D BA953_11255 PF00226 DnaJ domain BA953_11255 PF05099 Tellurite resistance protein TerB BA953_11265 PF00140 Sigma-70 factor, region 1.2 BA953_11265 PF04545 Sigma-70, region 4 BA953_11265 PF04542 Sigma-70 region 2 BA953_11265 PF03979 Sigma-70 factor, region 1.1 BA953_11265 PF04539 Sigma-70 region 3 BA953_11265 PF04546 Sigma-70, non-essential region BA953_11270 PF10410 DnaB-helicase binding domain of primase BA953_11270 PF08278 DNA primase DnaG DnaB-binding BA953_11270 PF08275 DNA primase catalytic core, N-terminal domain BA953_11270 PF01807 CHC2 zinc finger BA953_11275 PF09424 Yqey-like protein BA953_11280 PF01165 Ribosomal protein S21 BA953_11285 PF00814 Glycoprotease family BA953_11290 PF00561 alpha/beta hydrolase fold BA953_11295 PF02660 Glycerol-3-phosphate acyltransferase BA953_11300 PF02152 Dihydroneopterin aldolase BA953_11305 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BA953_11315 PF04977 Septum formation initiator BA953_11320 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BA953_11325 PF02542 YgbB family BA953_11330 PF01142 tRNA pseudouridine synthase D (TruD) BA953_11335 PF01975 Survival protein SurE BA953_11345 PF01476 LysM domain BA953_11345 PF01551 Peptidase family M23 BA953_11350 PF04539 Sigma-70 region 3 BA953_11350 PF04542 Sigma-70 region 2 BA953_11350 PF00140 Sigma-70 factor, region 1.2 BA953_11350 PF04545 Sigma-70, region 4 BA953_11355 PF03471 Transporter associated domain BA953_11355 PF00571 CBS domain BA953_11355 PF01595 Cyclin M transmembrane N-terminal domain BA953_11360 PF01578 Cytochrome C assembly protein BA953_11365 PF02978 Signal peptide binding domain BA953_11365 PF02881 SRP54-type protein, helical bundle domain BA953_11365 PF00448 SRP54-type protein, GTPase domain BA953_11370 PF00886 Ribosomal protein S16 BA953_11375 PF05239 PRC-barrel domain BA953_11375 PF01782 RimM N-terminal domain BA953_11380 PF01746 tRNA (Guanine-1)-methyltransferase BA953_11385 PF01245 Ribosomal protein L19 BA953_11390 PF03884 DNA gyrase inhibitor YacG BA953_11395 PF07072 Cell division protein BA953_11400 PF01121 Dephospho-CoA kinase BA953_11405 PF01478 Type IV leader peptidase family BA953_11405 PF06750 Bacterial Peptidase A24 N-terminal domain BA953_11410 PF00482 Type II secretion system (T2SS), protein F BA953_11415 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BA953_11415 PF00437 Type II/IV secretion system protein BA953_11420 PF07963 Prokaryotic N-terminal methylation motif BA953_11425 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BA953_11425 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BA953_11430 PF01510 N-acetylmuramoyl-L-alanine amidase BA953_11435 PF00258 Flavodoxin BA953_11440 PF00589 Phage integrase family BA953_11440 PF02899 Phage integrase, N-terminal SAM-like domain BA953_11445 PF10411 Disulfide bond isomerase protein N-terminus BA953_11445 PF13098 Thioredoxin-like domain BA953_11450 PF17768 RecJ OB domain BA953_11450 PF02272 DHHA1 domain BA953_11450 PF01368 DHH family BA953_11460 PF00456 Transketolase, thiamine diphosphate binding domain BA953_11460 PF17831 Pyruvate dehydrogenase E1 component middle domain BA953_11465 PF02817 e3 binding domain BA953_11465 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BA953_11465 PF00364 Biotin-requiring enzyme BA953_11470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BA953_11470 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA953_11475 PF00440 Bacterial regulatory proteins, tetR family BA953_11480 PF00156 Phosphoribosyl transferase domain BA953_11485 PF00484 Carbonic anhydrase BA953_11490 PF01740 STAS domain BA953_11490 PF00916 Sulfate permease family BA953_11495 PF00005 ABC transporter BA953_11500 PF01061 ABC-2 type transporter BA953_11505 PF02569 Pantoate-beta-alanine ligase BA953_11510 PF02548 Ketopantoate hydroxymethyltransferase BA953_11515 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BA953_11520 PF01743 Poly A polymerase head domain BA953_11520 PF12626 Polymerase A arginine-rich C-terminus BA953_11520 PF12627 Probable RNA and SrmB- binding site of polymerase A BA953_11525 PF00749 tRNA synthetases class I (E and Q), catalytic domain BA953_11530 PF01258 Prokaryotic dksA/traR C4-type zinc finger BA953_11535 PF03749 Sugar fermentation stimulation protein RE domain BA953_11535 PF17746 SfsA N-terminal OB domain BA953_11540 PF08482 ATP-dependent helicase C-terminal BA953_11540 PF00271 Helicase conserved C-terminal domain BA953_11540 PF04408 Helicase associated domain (HA2) BA953_11540 PF00270 DEAD/DEAH box helicase BA953_11555 PF11791 Aconitate B N-terminal domain BA953_11555 PF06434 Aconitate hydratase 2 N-terminus BA953_11555 PF00330 Aconitase family (aconitate hydratase) BA953_11560 PF06062 Uncharacterised protein family (UPF0231) BA953_11565 PF00543 Nitrogen regulatory protein P-II BA953_11570 PF00909 Ammonium Transporter Family BA953_11575 PF13416 Bacterial extracellular solute-binding protein BA953_11585 PF08402 TOBE domain BA953_11585 PF00005 ABC transporter BA953_11590 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BA953_11590 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BA953_11590 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BA953_11590 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BA953_11595 PF06165 Glycosyltransferase family 36 BA953_11595 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BA953_11600 PF00728 Glycosyl hydrolase family 20, catalytic domain BA953_11600 PF02838 Glycosyl hydrolase family 20, domain 2 BA953_11605 PF01869 BadF/BadG/BcrA/BcrD ATPase family BA953_11615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA953_11615 PF00005 ABC transporter BA953_11620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA953_11620 PF00005 ABC transporter BA953_11625 PF00528 Binding-protein-dependent transport system inner membrane component BA953_11625 PF12911 N-terminal TM domain of oligopeptide transport permease C BA953_11630 PF00528 Binding-protein-dependent transport system inner membrane component BA953_11635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA953_11645 PF05175 Methyltransferase small domain BA953_11645 PF08468 Methyltransferase small domain N-terminal BA953_11650 PF01594 AI-2E family transporter BA953_11655 PF00202 Aminotransferase class-III BA953_11665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_11665 PF00529 HlyD membrane-fusion protein of T1SS BA953_11670 PF00873 AcrB/AcrD/AcrF family BA953_11675 PF01476 LysM domain BA953_11675 PF01551 Peptidase family M23 BA953_11675 PF08525 Opacity-associated protein A N-terminal motif BA953_11680 PF00579 tRNA synthetases class I (W and Y) BA953_11690 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BA953_11695 PF13609 Gram-negative porin BA953_11700 PF03449 Transcription elongation factor, N-terminal BA953_11700 PF01272 Transcription elongation factor, GreA/GreB, C-term BA953_11705 PF01985 CRS1 / YhbY (CRM) domain BA953_11710 PF01728 FtsJ-like methyltransferase BA953_11715 PF01434 Peptidase family M41 BA953_11715 PF06480 FtsH Extracellular BA953_11715 PF17862 AAA+ lid domain BA953_11715 PF00004 ATPase family associated with various cellular activities (AAA) BA953_11720 PF00809 Pterin binding enzyme BA953_11725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BA953_11725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BA953_11725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BA953_11725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BA953_11735 PF00583 Acetyltransferase (GNAT) family BA953_11740 PF00990 Diguanylate cyclase, GGDEF domain BA953_11740 PF03707 Bacterial signalling protein N terminal repeat BA953_11740 PF00563 EAL domain BA953_11745 PF00009 Elongation factor Tu GTP binding domain BA953_11745 PF03144 Elongation factor Tu domain 2 BA953_11745 PF16658 Class II release factor RF3, C-terminal domain BA953_11750 PF00270 DEAD/DEAH box helicase BA953_11750 PF00271 Helicase conserved C-terminal domain BA953_11755 PF05175 Methyltransferase small domain BA953_11760 PF05525 Branched-chain amino acid transport protein BA953_11765 PF03462 PCRF domain BA953_11765 PF00472 RF-1 domain BA953_11770 PF01336 OB-fold nucleic acid binding domain BA953_11770 PF00152 tRNA synthetases class II (D, K and N) BA953_11785 PF00563 EAL domain BA953_11785 PF03707 Bacterial signalling protein N terminal repeat BA953_11785 PF00990 Diguanylate cyclase, GGDEF domain BA953_11795 PF13508 Acetyltransferase (GNAT) domain BA953_11800 PF03840 Preprotein translocase SecG subunit BA953_11815 PF17384 RimP C-terminal SH3 domain BA953_11815 PF02576 RimP N-terminal domain BA953_11820 PF00575 S1 RNA binding domain BA953_11820 PF08529 NusA N-terminal domain BA953_11820 PF13184 NusA-like KH domain BA953_11825 PF04760 Translation initiation factor IF-2, N-terminal region BA953_11825 PF08364 Bacterial translation initiation factor IF-2 associated region BA953_11825 PF00009 Elongation factor Tu GTP binding domain BA953_11825 PF11987 Translation-initiation factor 2 BA953_11830 PF02033 Ribosome-binding factor A BA953_11835 PF01509 TruB family pseudouridylate synthase (N terminal domain) BA953_11835 PF09157 Pseudouridine synthase II TruB, C-terminal BA953_11835 PF16198 tRNA pseudouridylate synthase B C-terminal domain BA953_11845 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BA953_11845 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA953_11850 PF01493 GXGXG motif BA953_11850 PF00310 Glutamine amidotransferases class-II BA953_11850 PF04898 Glutamate synthase central domain BA953_11850 PF01645 Conserved region in glutamate synthase BA953_11855 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA953_11855 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BA953_11860 PF00310 Glutamine amidotransferases class-II BA953_11860 PF01493 GXGXG motif BA953_11860 PF04898 Glutamate synthase central domain BA953_11860 PF01645 Conserved region in glutamate synthase BA953_11865 PF04055 Radical SAM superfamily BA953_11865 PF16199 Radical_SAM C-terminal domain BA953_11870 PF00990 Diguanylate cyclase, GGDEF domain BA953_11870 PF01590 GAF domain BA953_11870 PF00563 EAL domain BA953_11870 PF00360 Phytochrome region BA953_11875 PF18415 Histidine kinase receptor ArcB trans-membrane domain BA953_11875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_11875 PF01627 Hpt domain BA953_11875 PF00072 Response regulator receiver domain BA953_11875 PF00989 PAS fold BA953_11875 PF00512 His Kinase A (phospho-acceptor) domain BA953_11885 PF02321 Outer membrane efflux protein BA953_11890 PF00293 NUDIX domain BA953_11895 PF06853 Protein of unknown function (DUF1249) BA953_11900 PF00149 Calcineurin-like phosphoesterase BA953_11905 PF05728 Uncharacterised protein family (UPF0227) BA953_11910 PF00986 DNA gyrase B subunit, carboxyl terminus BA953_11910 PF01751 Toprim domain BA953_11910 PF00204 DNA gyrase B BA953_11910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_11915 PF03989 DNA gyrase C-terminal domain, beta-propeller BA953_11915 PF00521 DNA gyrase/topoisomerase IV, subunit A BA953_11920 PF13180 PDZ domain BA953_11925 PF00595 PDZ domain BA953_11930 PF06295 Protein of unknown function (DUF1043) BA953_11935 PF03969 AFG1-like ATPase BA953_11940 PF00572 Ribosomal protein L13 BA953_11945 PF00380 Ribosomal protein S9/S16 BA953_11950 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BA953_11950 PF00355 Rieske [2Fe-2S] domain BA953_11955 PF00032 Cytochrome b(C-terminal)/b6/petD BA953_11955 PF00033 Cytochrome b/b6/petB BA953_11960 PF02167 Cytochrome C1 family BA953_11965 PF02798 Glutathione S-transferase, N-terminal domain BA953_11965 PF00043 Glutathione S-transferase, C-terminal domain BA953_11970 PF04386 Stringent starvation protein B BA953_11975 PF04972 BON domain BA953_11980 PF13580 SIS domain BA953_11985 PF02021 Uncharacterised protein family UPF0102 BA953_11990 PF04348 LppC putative lipoprotein BA953_11995 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BA953_12005 PF01795 MraW methylase family BA953_12010 PF04999 Cell division protein FtsL BA953_12015 PF03717 Penicillin-binding Protein dimerisation domain BA953_12015 PF00905 Penicillin binding protein transpeptidase domain BA953_12020 PF08245 Mur ligase middle domain BA953_12020 PF02875 Mur ligase family, glutamate ligase domain BA953_12020 PF01225 Mur ligase family, catalytic domain BA953_12025 PF01225 Mur ligase family, catalytic domain BA953_12025 PF08245 Mur ligase middle domain BA953_12025 PF02875 Mur ligase family, glutamate ligase domain BA953_12030 PF00953 Glycosyl transferase family 4 BA953_12030 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BA953_12035 PF02875 Mur ligase family, glutamate ligase domain BA953_12035 PF08245 Mur ligase middle domain BA953_12040 PF01098 Cell cycle protein BA953_12045 PF04101 Glycosyltransferase family 28 C-terminal domain BA953_12045 PF03033 Glycosyltransferase family 28 N-terminal domain BA953_12050 PF02875 Mur ligase family, glutamate ligase domain BA953_12050 PF08245 Mur ligase middle domain BA953_12050 PF01225 Mur ligase family, catalytic domain BA953_12055 PF08478 POTRA domain, FtsQ-type BA953_12055 PF03799 Cell division protein FtsQ BA953_12060 PF02491 SHS2 domain inserted in FTSA BA953_12065 PF00091 Tubulin/FtsZ family, GTPase domain BA953_12065 PF12327 FtsZ family, C-terminal domain BA953_12070 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BA953_12075 PF07516 SecA Wing and Scaffold domain BA953_12075 PF01043 SecA preprotein cross-linking domain BA953_12075 PF07517 SecA DEAD-like domain BA953_12075 PF02810 SEC-C motif BA953_12080 PF00293 NUDIX domain BA953_12085 PF05173 Dihydrodipicolinate reductase, C-terminus BA953_12085 PF01113 Dihydrodipicolinate reductase, N-terminus BA953_12090 PF00117 Glutamine amidotransferase class-I BA953_12090 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BA953_12095 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BA953_12095 PF02142 MGS-like domain BA953_12095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BA953_12100 PF01925 Sulfite exporter TauE/SafE BA953_12105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_12105 PF03466 LysR substrate binding domain BA953_12110 PF01228 Glycine radical BA953_12115 PF01261 Xylose isomerase-like TIM barrel BA953_12120 PF03167 Uracil DNA glycosylase superfamily BA953_12135 PF01235 Sodium:alanine symporter family BA953_12140 PF03883 Peroxide stress protein YaaA BA953_12145 PF01026 TatD related DNase BA953_12150 PF01773 Na+ dependent nucleoside transporter N-terminus BA953_12150 PF07662 Na+ dependent nucleoside transporter C-terminus BA953_12150 PF07670 Nucleoside recognition BA953_12160 PF01791 DeoC/LacD family aldolase BA953_12165 PF02885 Glycosyl transferase family, helical bundle domain BA953_12165 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BA953_12165 PF00591 Glycosyl transferase family, a/b domain BA953_12170 PF01676 Metalloenzyme superfamily BA953_12175 PF01048 Phosphorylase superfamily BA953_12185 PF18429 Domain of unknown function (DUF5609) BA953_12195 PF18073 Rubredoxin metal binding domain BA953_12200 PF00266 Aminotransferase class-V BA953_12205 PF01965 DJ-1/PfpI family BA953_12210 PF02558 Ketopantoate reductase PanE/ApbA BA953_12210 PF08546 Ketopantoate reductase PanE/ApbA C terminal BA953_12215 PF03502 Nucleoside-specific channel-forming protein, Tsx BA953_12225 PF04542 Sigma-70 region 2 BA953_12225 PF04545 Sigma-70, region 4 BA953_12235 PF07690 Major Facilitator Superfamily BA953_12240 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BA953_12250 PF05175 Methyltransferase small domain BA953_12255 PF01722 BolA-like protein BA953_12260 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) BA953_12260 PF11973 NQRA C-terminal domain BA953_12265 PF03116 NQR2, RnfD, RnfE family BA953_12270 PF04205 FMN-binding domain BA953_12275 PF02508 Rnf-Nqr subunit, membrane protein BA953_12280 PF02508 Rnf-Nqr subunit, membrane protein BA953_12285 PF00970 Oxidoreductase FAD-binding domain BA953_12285 PF00111 2Fe-2S iron-sulfur cluster binding domain BA953_12285 PF00175 Oxidoreductase NAD-binding domain BA953_12290 PF02424 ApbE family BA953_12305 PF11799 impB/mucB/samB family C-terminal domain BA953_12305 PF00817 impB/mucB/samB family BA953_12305 PF11798 IMS family HHH motif BA953_12310 PF09382 RQC domain BA953_12310 PF00270 DEAD/DEAH box helicase BA953_12310 PF00271 Helicase conserved C-terminal domain BA953_12310 PF00570 HRDC domain BA953_12310 PF16124 RecQ zinc-binding BA953_12315 PF03449 Transcription elongation factor, N-terminal BA953_12315 PF01272 Transcription elongation factor, GreA/GreB, C-term BA953_12325 PF00704 Glycosyl hydrolases family 18 BA953_12325 PF06483 Chitinase C BA953_12330 PF00209 Sodium:neurotransmitter symporter family BA953_12340 PF08443 RimK-like ATP-grasp domain BA953_12340 PF18030 RimK PreATP-grasp domain BA953_12345 PF08443 RimK-like ATP-grasp domain BA953_12345 PF18030 RimK PreATP-grasp domain BA953_12350 PF07687 Peptidase dimerisation domain BA953_12350 PF01546 Peptidase family M20/M25/M40 BA953_12355 PF00860 Permease family BA953_12360 PF00156 Phosphoribosyl transferase domain BA953_12370 PF07417 Sigma factor-binding transcriptional regulator Crl BA953_12375 PF00696 Amino acid kinase family BA953_12375 PF01472 PUA domain BA953_12380 PF00171 Aldehyde dehydrogenase family BA953_12385 PF03477 ATP cone domain BA953_12390 PF01872 RibD C-terminal domain BA953_12390 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BA953_12395 PF00677 Lumazine binding domain BA953_12400 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BA953_12400 PF00925 GTP cyclohydrolase II BA953_12405 PF00885 6,7-dimethyl-8-ribityllumazine synthase BA953_12410 PF01029 NusB family BA953_12415 PF00586 AIR synthase related protein, N-terminal domain BA953_12415 PF02769 AIR synthase related protein, C-terminal domain BA953_12420 PF04608 Phosphatidylglycerophosphatase A BA953_12425 PF11944 Protein of unknown function (DUF3461) BA953_12430 PF01842 ACT domain BA953_12430 PF01966 HD domain BA953_12430 PF01909 Nucleotidyltransferase domain BA953_12430 PF08335 GlnD PII-uridylyltransferase BA953_12435 PF00557 Metallopeptidase family M24 BA953_12440 PF00318 Ribosomal protein S2 BA953_12445 PF00889 Elongation factor TS BA953_12450 PF00696 Amino acid kinase family BA953_12455 PF01765 Ribosome recycling factor BA953_12460 PF01255 Putative undecaprenyl diphosphate synthase BA953_12470 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BA953_12470 PF13288 DXP reductoisomerase C-terminal domain BA953_12470 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BA953_12475 PF02163 Peptidase family M50 BA953_12475 PF17820 PDZ domain BA953_12480 PF01103 Surface antigen BA953_12480 PF07244 Surface antigen variable number repeat BA953_12485 PF03938 Outer membrane protein (OmpH-like) BA953_12490 PF00132 Bacterial transferase hexapeptide (six repeats) BA953_12490 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BA953_12495 PF07977 FabA-like domain BA953_12500 PF00132 Bacterial transferase hexapeptide (six repeats) BA953_12500 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BA953_12505 PF02684 Lipid-A-disaccharide synthetase BA953_12510 PF01351 Ribonuclease HII BA953_12515 PF07733 Bacterial DNA polymerase III alpha NTPase domain BA953_12515 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BA953_12515 PF01336 OB-fold nucleic acid binding domain BA953_12515 PF14579 Helix-hairpin-helix motif BA953_12515 PF02811 PHP domain BA953_12520 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BA953_12525 PF01171 PP-loop family BA953_12525 PF09179 TilS substrate binding domain BA953_12525 PF11734 TilS substrate C-terminal domain BA953_12530 PF00034 Cytochrome c BA953_12535 PF00543 Nitrogen regulatory protein P-II BA953_12540 PF03372 Endonuclease/Exonuclease/phosphatase family BA953_12550 PF01476 LysM domain BA953_12550 PF01464 Transglycosylase SLT domain BA953_12560 PF08241 Methyltransferase domain BA953_12565 PF00075 RNase H BA953_12570 PF00929 Exonuclease BA953_12580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BA953_12580 PF09317 Domain of unknown function (DUF1974) BA953_12580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BA953_12580 PF02770 Acyl-CoA dehydrogenase, middle domain BA953_12585 PF13580 SIS domain BA953_12590 PF13230 Glutamine amidotransferases class-II BA953_12595 PF04073 Aminoacyl-tRNA editing domain BA953_12595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BA953_12595 PF03129 Anticodon binding domain BA953_12600 PF01980 tRNA-methyltransferase O BA953_12600 PF18389 TrmO C-terminal domain BA953_12610 PF00444 Ribosomal protein L36 BA953_12615 PF03806 AbgT putative transporter family BA953_12625 PF03180 NLPA lipoprotein BA953_12630 PF00528 Binding-protein-dependent transport system inner membrane component BA953_12635 PF09383 NIL domain BA953_12635 PF00005 ABC transporter BA953_12650 PF00356 Bacterial regulatory proteins, lacI family BA953_12655 PF02378 Phosphotransferase system, EIIC BA953_12655 PF00367 phosphotransferase system, EIIB BA953_12660 PF16657 Maltogenic Amylase, C-terminal domain BA953_12660 PF00128 Alpha amylase, catalytic domain BA953_12685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_12690 PF00873 AcrB/AcrD/AcrF family BA953_12700 PF00464 Serine hydroxymethyltransferase BA953_12715 PF04055 Radical SAM superfamily BA953_12715 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BA953_12720 PF03099 Biotin/lipoate A/B protein ligase family BA953_12725 PF04359 Protein of unknown function (DUF493) BA953_12730 PF07943 Penicillin-binding protein 5, C-terminal domain BA953_12730 PF00768 D-alanyl-D-alanine carboxypeptidase BA953_12735 PF03330 Lytic transglycolase BA953_12735 PF05036 Sporulation related domain BA953_12740 PF01098 Cell cycle protein BA953_12745 PF00905 Penicillin binding protein transpeptidase domain BA953_12745 PF03717 Penicillin-binding Protein dimerisation domain BA953_12750 PF02590 Predicted SPOUT methyltransferase BA953_12760 PF14840 Processivity clamp loader gamma complex DNA pol III C-term BA953_12760 PF06144 DNA polymerase III, delta subunit BA953_12765 PF04390 Lipopolysaccharide-assembly BA953_12770 PF13603 Leucyl-tRNA synthetase, Domain 2 BA953_12770 PF08264 Anticodon-binding domain of tRNA BA953_12770 PF00133 tRNA synthetases class I (I, L, M and V) BA953_12780 PF00795 Carbon-nitrogen hydrolase BA953_12785 PF00571 CBS domain BA953_12785 PF03471 Transporter associated domain BA953_12790 PF02130 Uncharacterized protein family UPF0054 BA953_12795 PF02562 PhoH-like protein BA953_12800 PF04055 Radical SAM superfamily BA953_12800 PF01938 TRAM domain BA953_12800 PF00919 Uncharacterized protein family UPF0004 BA953_12805 PF01494 FAD binding domain BA953_12810 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BA953_12815 PF05524 PEP-utilising enzyme, N-terminal BA953_12815 PF00391 PEP-utilising enzyme, mobile domain BA953_12815 PF02896 PEP-utilising enzyme, TIM barrel domain BA953_12820 PF00381 PTS HPr component phosphorylation site BA953_12825 PF00291 Pyridoxal-phosphate dependent enzyme BA953_12835 PF04354 ZipA, C-terminal FtsZ-binding domain BA953_12845 PF13609 Gram-negative porin BA953_12860 PF01145 SPFH domain / Band 7 family BA953_12860 PF16200 C-terminal region of band_7 BA953_12865 PF00085 Thioredoxin BA953_12870 PF00106 short chain dehydrogenase BA953_12875 PF01370 NAD dependent epimerase/dehydratase family BA953_12875 PF08338 Domain of unknown function (DUF1731) BA953_12880 PF07556 Protein of unknown function (DUF1538) BA953_12885 PF07556 Protein of unknown function (DUF1538) BA953_12900 PF12850 Calcineurin-like phosphoesterase superfamily domain BA953_12915 PF17323 Trans-membrane regulatory protein ToxS BA953_12920 PF00486 Transcriptional regulatory protein, C terminal BA953_12925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_12925 PF00183 Hsp90 protein BA953_12930 PF05191 Adenylate kinase, active site lid BA953_12935 PF00762 Ferrochelatase BA953_12955 PF00403 Heavy-metal-associated domain BA953_12960 PF13609 Gram-negative porin BA953_12970 PF00749 tRNA synthetases class I (E and Q), catalytic domain BA953_12975 PF00691 OmpA family BA953_12975 PF01389 OmpA-like transmembrane domain BA953_12980 PF01389 OmpA-like transmembrane domain BA953_12980 PF00691 OmpA family BA953_12995 PF08019 Phosphoethanolamine transferase EptA/EptB BA953_12995 PF00884 Sulfatase BA953_13005 PF05175 Methyltransferase small domain BA953_13045 PF04316 Anti-sigma-28 factor, FlgM BA953_13055 PF01584 CheW-like domain BA953_13055 PF00072 Response regulator receiver domain BA953_13060 PF01739 CheR methyltransferase, SAM binding domain BA953_13060 PF03705 CheR methyltransferase, all-alpha domain BA953_13065 PF00460 Flagella basal body rod protein BA953_13070 PF00460 Flagella basal body rod protein BA953_13070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA953_13075 PF03963 Flagellar hook capping protein - N-terminal region BA953_13075 PF13860 FlgD Ig-like domain BA953_13075 PF13861 FlgD Tudor-like domain BA953_13080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA953_13080 PF00460 Flagella basal body rod protein BA953_13080 PF07559 Flagellar basal body protein FlaE BA953_13085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA953_13085 PF00460 Flagella basal body rod protein BA953_13090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA953_13090 PF00460 Flagella basal body rod protein BA953_13095 PF02107 Flagellar L-ring protein BA953_13100 PF02119 Flagellar P-ring protein BA953_13105 PF10135 Rod binding protein BA953_13105 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BA953_13110 PF07196 Flagellin hook IN motif BA953_13110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA953_13115 PF00700 Bacterial flagellin C-terminal helical region BA953_13115 PF00669 Bacterial flagellin N-terminal helical region BA953_13120 PF00669 Bacterial flagellin N-terminal helical region BA953_13120 PF07196 Flagellin hook IN motif BA953_13120 PF00700 Bacterial flagellin C-terminal helical region BA953_13125 PF00700 Bacterial flagellin C-terminal helical region BA953_13125 PF07196 Flagellin hook IN motif BA953_13125 PF00669 Bacterial flagellin N-terminal helical region BA953_13235 PF06071 Protein of unknown function (DUF933) BA953_13235 PF01926 50S ribosome-binding GTPase BA953_13240 PF01195 Peptidyl-tRNA hydrolase BA953_13245 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BA953_13245 PF14572 Phosphoribosyl synthetase-associated domain BA953_13255 PF03550 Outer membrane lipoprotein LolB BA953_13265 PF00472 RF-1 domain BA953_13265 PF03462 PCRF domain BA953_13270 PF13847 Methyltransferase domain BA953_13270 PF17827 PrmC N-terminal domain BA953_13280 PF13369 Transglutaminase-like superfamily BA953_13285 PF00793 DAHP synthetase I family BA953_13290 PF00149 Calcineurin-like phosphoesterase BA953_13290 PF02872 5'-nucleotidase, C-terminal domain BA953_13295 PF04073 Aminoacyl-tRNA editing domain BA953_13300 PF00860 Permease family BA953_13315 PF03358 NADPH-dependent FMN reductase BA953_13320 PF03960 ArsC family BA953_13325 PF13181 Tetratricopeptide repeat BA953_13325 PF01435 Peptidase family M48 BA953_13335 PF01594 AI-2E family transporter BA953_13340 PF00672 HAMP domain BA953_13340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_13340 PF02743 Cache domain BA953_13345 PF00578 AhpC/TSA family BA953_13350 PF01842 ACT domain BA953_13355 PF00701 Dihydrodipicolinate synthetase family BA953_13365 PF03553 Na+/H+ antiporter family BA953_13365 PF13726 Na+-H+ antiporter family BA953_13370 PF00929 Exonuclease BA953_13375 PF00691 OmpA family BA953_13375 PF18393 MotY N-terminal domain BA953_13380 PF10952 Protein of unknown function (DUF2753) BA953_13385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA953_13390 PF00730 HhH-GPD superfamily base excision DNA repair protein BA953_13390 PF00633 Helix-hairpin-helix motif BA953_13390 PF10576 Iron-sulfur binding domain of endonuclease III BA953_13405 PF03116 NQR2, RnfD, RnfE family BA953_13410 PF10531 SLBB domain BA953_13410 PF12838 4Fe-4S dicluster domain BA953_13410 PF13375 RnfC Barrel sandwich hybrid domain BA953_13410 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BA953_13415 PF04060 Putative Fe-S cluster BA953_13420 PF02508 Rnf-Nqr subunit, membrane protein BA953_13425 PF01464 Transglycosylase SLT domain BA953_13445 PF00460 Flagella basal body rod protein BA953_13450 PF00460 Flagella basal body rod protein BA953_13450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA953_13455 PF13860 FlgD Ig-like domain BA953_13455 PF03963 Flagellar hook capping protein - N-terminal region BA953_13455 PF13861 FlgD Tudor-like domain BA953_13460 PF07559 Flagellar basal body protein FlaE BA953_13460 PF00460 Flagella basal body rod protein BA953_13460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA953_13465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA953_13465 PF00460 Flagella basal body rod protein BA953_13470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA953_13470 PF00460 Flagella basal body rod protein BA953_13475 PF02107 Flagellar L-ring protein BA953_13480 PF02119 Flagellar P-ring protein BA953_13485 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BA953_13485 PF10135 Rod binding protein BA953_13510 PF00691 OmpA family BA953_13510 PF13677 Membrane MotB of proton-channel complex MotA/MotB BA953_13515 PF01618 MotA/TolQ/ExbB proton channel family BA953_13520 PF04545 Sigma-70, region 4 BA953_13520 PF04542 Sigma-70 region 2 BA953_13525 PF03748 Flagellar basal body-associated protein FliL BA953_13540 PF02561 Flagellar protein FliS BA953_13545 PF02465 Flagellar hook-associated protein 2 N-terminus BA953_13545 PF07196 Flagellin hook IN motif BA953_13545 PF07195 Flagellar hook-associated protein 2 C-terminus BA953_13550 PF00700 Bacterial flagellin C-terminal helical region BA953_13550 PF00669 Bacterial flagellin N-terminal helical region BA953_13560 PF00771 FHIPEP family BA953_13565 PF01312 FlhB HrpN YscU SpaS Family BA953_13570 PF01311 Bacterial export proteins, family 1 BA953_13575 PF01313 Bacterial export proteins, family 3 BA953_13580 PF00813 FliP family BA953_13585 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BA953_13595 PF13488 Glycine zipper BA953_13595 PF00691 OmpA family BA953_13600 PF02954 Bacterial regulatory protein, Fis family BA953_13600 PF00072 Response regulator receiver domain BA953_13600 PF00158 Sigma-54 interaction domain BA953_13605 PF02049 Flagellar hook-basal body complex protein FliE BA953_13610 PF01514 Secretory protein of YscJ/FliF family BA953_13610 PF08345 Flagellar M-ring protein C-terminal BA953_13615 PF14842 FliG N-terminal domain BA953_13615 PF14841 FliG middle domain BA953_13615 PF01706 FliG C-terminal domain BA953_13625 PF18269 T3SS EscN ATPase C-terminal domain BA953_13625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BA953_13640 PF01551 Peptidase family M23 BA953_13640 PF04225 Opacity-associated protein A LysM-like domain BA953_13675 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BA953_13675 PF01648 4'-phosphopantetheinyl transferase superfamily BA953_13680 PF07690 Major Facilitator Superfamily BA953_13685 PF00501 AMP-binding enzyme BA953_13685 PF13193 AMP-binding enzyme C-terminal domain BA953_13685 PF00668 Condensation domain BA953_13685 PF00550 Phosphopantetheine attachment site BA953_13690 PF00668 Condensation domain BA953_13690 PF13193 AMP-binding enzyme C-terminal domain BA953_13690 PF00501 AMP-binding enzyme BA953_13690 PF00975 Thioesterase domain BA953_13690 PF00550 Phosphopantetheine attachment site BA953_13705 PF00075 RNase H BA953_13755 PF13356 Arm DNA-binding domain BA953_13755 PF00589 Phage integrase family BA953_13765 PF02151 UvrB/uvrC motif BA953_13765 PF12344 Ultra-violet resistance protein B BA953_13765 PF04851 Type III restriction enzyme, res subunit BA953_13765 PF17757 UvrB interaction domain BA953_13765 PF00271 Helicase conserved C-terminal domain BA953_13770 PF00158 Sigma-54 interaction domain BA953_13770 PF00072 Response regulator receiver domain BA953_13770 PF02954 Bacterial regulatory protein, Fis family BA953_13775 PF01627 Hpt domain BA953_13780 PF01933 Uncharacterised protein family UPF0052 BA953_13785 PF04055 Radical SAM superfamily BA953_13785 PF06463 Molybdenum Cofactor Synthesis C BA953_13790 PF00994 Probable molybdopterin binding domain BA953_13795 PF01967 MoaC family BA953_13800 PF02597 ThiS family BA953_13805 PF02391 MoaE protein BA953_13820 PF00571 CBS domain BA953_13825 PF01554 MatE BA953_13830 PF00403 Heavy-metal-associated domain BA953_13835 PF01048 Phosphorylase superfamily BA953_13870 PF09334 tRNA synthetases class I (M) BA953_13870 PF01588 Putative tRNA binding domain BA953_13875 PF10609 NUBPL iron-transfer P-loop NTPase BA953_13880 PF00485 Phosphoribulokinase / Uridine kinase family BA953_13885 PF05170 AsmA family BA953_13895 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BA953_13895 PF12557 Cob(I)alamin adenosyltransferase N terminal BA953_13905 PF01227 GTP cyclohydrolase I BA953_13910 PF02152 Dihydroneopterin aldolase BA953_13915 PF01227 GTP cyclohydrolase I BA953_13915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BA953_13920 PF01451 Low molecular weight phosphotyrosine protein phosphatase BA953_13935 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BA953_13935 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BA953_13940 PF00462 Glutaredoxin BA953_13945 PF01131 DNA topoisomerase BA953_13945 PF01751 Toprim domain BA953_13955 PF01161 Phosphatidylethanolamine-binding protein BA953_13960 PF00106 short chain dehydrogenase BA953_13965 PF00850 Histone deacetylase domain BA953_13970 PF00293 NUDIX domain BA953_13970 PF13344 Haloacid dehalogenase-like hydrolase BA953_13990 PF00158 Sigma-54 interaction domain BA953_13990 PF02954 Bacterial regulatory protein, Fis family BA953_13990 PF00072 Response regulator receiver domain BA953_13995 PF00989 PAS fold BA953_13995 PF00512 His Kinase A (phospho-acceptor) domain BA953_13995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_14010 PF00672 HAMP domain BA953_14010 PF02743 Cache domain BA953_14010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_14020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_14020 PF00672 HAMP domain BA953_14020 PF02743 Cache domain BA953_14030 PF00884 Sulfatase BA953_14030 PF11893 Domain of unknown function (DUF3413) BA953_14035 PF07208 Protein of unknown function (DUF1414) BA953_14060 PF03553 Na+/H+ antiporter family BA953_14065 PF01118 Semialdehyde dehydrogenase, NAD binding domain BA953_14065 PF02774 Semialdehyde dehydrogenase, dimerisation domain BA953_14070 PF00520 Ion transport protein BA953_14070 PF00027 Cyclic nucleotide-binding domain BA953_14075 PF01914 MarC family integral membrane protein BA953_14080 PF00171 Aldehyde dehydrogenase family BA953_14080 PF00465 Iron-containing alcohol dehydrogenase BA953_14085 PF03776 Septum formation topological specificity factor MinE BA953_14090 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BA953_14095 PF03775 Septum formation inhibitor MinC, C-terminal domain BA953_14095 PF05209 Septum formation inhibitor MinC, N-terminal domain BA953_14100 PF05166 YcgL domain BA953_14105 PF13406 Transglycosylase SLT domain BA953_14110 PF03466 LysR substrate binding domain BA953_14110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_14115 PF07670 Nucleoside recognition BA953_14115 PF07662 Na+ dependent nucleoside transporter C-terminus BA953_14115 PF01773 Na+ dependent nucleoside transporter N-terminus BA953_14125 PF03692 Putative zinc- or iron-chelating domain BA953_14130 PF00924 Mechanosensitive ion channel BA953_14130 PF05552 Conserved TM helix BA953_14140 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA953_14150 PF00245 Alkaline phosphatase BA953_14165 PF13847 Methyltransferase domain BA953_14170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_14170 PF02743 Cache domain BA953_14170 PF00672 HAMP domain BA953_14175 PF01263 Aldose 1-epimerase BA953_14180 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BA953_14180 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BA953_14185 PF01641 SelR domain BA953_14195 PF07023 Protein of unknown function (DUF1315) BA953_14200 PF02810 SEC-C motif BA953_14205 PF00563 EAL domain BA953_14205 PF08668 HDOD domain BA953_14215 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BA953_14220 PF01406 tRNA synthetases class I (C) catalytic domain BA953_14220 PF09190 DALR domain BA953_14225 PF00265 Thymidine kinase BA953_14230 PF01176 Translation initiation factor 1A / IF-1 BA953_14235 PF04376 Arginine-tRNA-protein transferase, N terminus BA953_14235 PF04377 Arginine-tRNA-protein transferase, C terminus BA953_14255 PF10692 Protein of unknown function (DUF2498) BA953_14260 PF01751 Toprim domain BA953_14260 PF08272 Topoisomerase I zinc-ribbon-like BA953_14260 PF01131 DNA topoisomerase BA953_14260 PF01396 Topoisomerase DNA binding C4 zinc finger BA953_14265 PF00483 Nucleotidyl transferase BA953_14290 PF04993 TfoX N-terminal domain BA953_14290 PF04994 TfoX C-terminal domain BA953_14295 PF00356 Bacterial regulatory proteins, lacI family BA953_14300 PF02613 Nitrate reductase delta subunit BA953_14305 PF00486 Transcriptional regulatory protein, C terminal BA953_14305 PF00072 Response regulator receiver domain BA953_14310 PF02698 DUF218 domain BA953_14320 PF17192 MukF middle domain BA953_14320 PF03882 MukF winged-helix domain BA953_14320 PF17193 MukF C-terminal domain BA953_14325 PF04288 MukE-like family BA953_14330 PF16330 MukB hinge domain BA953_14330 PF04310 MukB N-terminal BA953_14335 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BA953_14335 PF12833 Helix-turn-helix domain BA953_14340 PF00171 Aldehyde dehydrogenase family BA953_14345 PF00732 GMC oxidoreductase BA953_14345 PF05199 GMC oxidoreductase BA953_14360 PF18030 RimK PreATP-grasp domain BA953_14360 PF08443 RimK-like ATP-grasp domain BA953_14365 PF08003 Protein of unknown function (DUF1698) BA953_14370 PF13649 Methyltransferase domain BA953_14375 PF01904 Protein of unknown function DUF72 BA953_14380 PF00152 tRNA synthetases class II (D, K and N) BA953_14380 PF02938 GAD domain BA953_14380 PF01336 OB-fold nucleic acid binding domain BA953_14385 PF00849 RNA pseudouridylate synthase BA953_14390 PF03971 Monomeric isocitrate dehydrogenase BA953_14395 PF00313 'Cold-shock' DNA-binding domain BA953_14400 PF02617 ATP-dependent Clp protease adaptor protein ClpS BA953_14405 PF00004 ATPase family associated with various cellular activities (AAA) BA953_14405 PF10431 C-terminal, D2-small domain, of ClpB protein BA953_14405 PF02861 Clp amino terminal domain, pathogenicity island component BA953_14405 PF17871 AAA lid domain BA953_14405 PF07724 AAA domain (Cdc48 subfamily) BA953_14430 PF01226 Formate/nitrite transporter BA953_14435 PF03649 Uncharacterised protein family (UPF0014) BA953_14440 PF06796 Periplasmic nitrate reductase protein NapE BA953_14445 PF03264 NapC/NirT cytochrome c family, N-terminal region BA953_14450 PF00384 Molybdopterin oxidoreductase BA953_14450 PF18364 Molybdopterin oxidoreductase N-terminal domain BA953_14450 PF01568 Molydopterin dinucleotide binding domain BA953_14460 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BA953_14465 PF00106 short chain dehydrogenase BA953_14485 PF02075 Crossover junction endodeoxyribonuclease RuvC BA953_14490 PF00672 HAMP domain BA953_14490 PF02203 Tar ligand binding domain homologue BA953_14490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_14495 PF07499 RuvA, C-terminal domain BA953_14495 PF01330 RuvA N terminal domain BA953_14500 PF17864 RuvB AAA lid domain BA953_14500 PF05491 RuvB C-terminal winged helix domain BA953_14500 PF05496 Holliday junction DNA helicase RuvB P-loop domain BA953_14505 PF01654 Cytochrome bd terminal oxidase subunit I BA953_14510 PF02322 Cytochrome bd terminal oxidase subunit II BA953_14515 PF08173 Membrane bound YbgT-like protein BA953_14525 PF03061 Thioesterase superfamily BA953_14530 PF01618 MotA/TolQ/ExbB proton channel family BA953_14535 PF02472 Biopolymer transport protein ExbD/TolR BA953_14550 PF00691 OmpA family BA953_14555 PF16331 TolA binding protein trimerisation BA953_14555 PF13174 Tetratricopeptide repeat BA953_14560 PF02445 Quinolinate synthetase A protein BA953_14565 PF02600 Disulfide bond formation protein DsbB BA953_14575 PF00089 Trypsin BA953_14590 PF00072 Response regulator receiver domain BA953_14590 PF09308 LuxQ, periplasmic BA953_14590 PF00512 His Kinase A (phospho-acceptor) domain BA953_14590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_14595 PF06610 L-alanine exporter BA953_14610 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BA953_14615 PF01161 Phosphatidylethanolamine-binding protein BA953_14620 PF12804 MobA-like NTP transferase domain BA953_14620 PF03479 Plants and Prokaryotes Conserved (PCC) domain BA953_14620 PF00132 Bacterial transferase hexapeptide (six repeats) BA953_14630 PF01238 Phosphomannose isomerase type I BA953_14635 PF00480 ROK family BA953_14650 PF00512 His Kinase A (phospho-acceptor) domain BA953_14650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_14650 PF00672 HAMP domain BA953_14655 PF00072 Response regulator receiver domain BA953_14655 PF00486 Transcriptional regulatory protein, C terminal BA953_14660 PF00535 Glycosyl transferase family 2 BA953_14665 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase BA953_14675 PF00440 Bacterial regulatory proteins, tetR family BA953_14675 PF16295 Tetracyclin repressor-like, C-terminal domain BA953_14680 PF09317 Domain of unknown function (DUF1974) BA953_14680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BA953_14680 PF02770 Acyl-CoA dehydrogenase, middle domain BA953_14680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BA953_14685 PF07055 Enoyl reductase FAD binding domain BA953_14685 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BA953_14685 PF12241 Trans-2-enoyl-CoA reductase catalytic region BA953_14695 PF03372 Endonuclease/Exonuclease/phosphatase family BA953_14700 PF00672 HAMP domain BA953_14700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_14705 PF08007 Cupin superfamily protein BA953_14710 PF10689 Protein of unknown function (DUF2496) BA953_14720 PF01925 Sulfite exporter TauE/SafE BA953_14725 PF06733 DEAD_2 BA953_14725 PF13307 Helicase C-terminal domain BA953_14730 PF13609 Gram-negative porin BA953_14735 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BA953_14740 PF00202 Aminotransferase class-III BA953_14745 PF04055 Radical SAM superfamily BA953_14745 PF06968 Biotin and Thiamin Synthesis associated domain BA953_14755 PF08241 Methyltransferase domain BA953_14755 PF12697 Alpha/beta hydrolase family BA953_14775 PF00106 short chain dehydrogenase BA953_14775 PF00561 alpha/beta hydrolase fold BA953_14800 PF16036 Chalcone isomerase-like BA953_14810 PF08328 Adenylosuccinate lyase C-terminal BA953_14810 PF00206 Lyase BA953_14815 PF04356 Protein of unknown function (DUF489) BA953_14830 PF00294 pfkB family carbohydrate kinase BA953_14835 PF00816 H-NS histone family BA953_14840 PF03553 Na+/H+ antiporter family BA953_14845 PF01634 ATP phosphoribosyltransferase BA953_14845 PF08029 HisG, C-terminal domain BA953_14850 PF00815 Histidinol dehydrogenase BA953_14855 PF00155 Aminotransferase class I and II BA953_14860 PF08645 Polynucleotide kinase 3 phosphatase BA953_14860 PF00475 Imidazoleglycerol-phosphate dehydratase BA953_14865 PF00117 Glutamine amidotransferase class-I BA953_14870 PF00977 Histidine biosynthesis protein BA953_14875 PF00977 Histidine biosynthesis protein BA953_14880 PF01502 Phosphoribosyl-AMP cyclohydrolase BA953_14880 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BA953_14885 PF01709 Transcriptional regulator BA953_14895 PF02833 DHHA2 domain BA953_14895 PF01368 DHH family BA953_14910 PF00005 ABC transporter BA953_14915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA953_14915 PF00005 ABC transporter BA953_14920 PF12911 N-terminal TM domain of oligopeptide transport permease C BA953_14920 PF00528 Binding-protein-dependent transport system inner membrane component BA953_14925 PF00528 Binding-protein-dependent transport system inner membrane component BA953_14930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA953_14935 PF02954 Bacterial regulatory protein, Fis family BA953_14935 PF00158 Sigma-54 interaction domain BA953_14940 PF04012 PspA/IM30 family BA953_14945 PF06667 Phage shock protein B BA953_14950 PF04024 PspC domain BA953_14955 PF00529 HlyD membrane-fusion protein of T1SS BA953_14955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_14960 PF13533 Biotin-lipoyl like BA953_14970 PF03352 Methyladenine glycosylase BA953_14975 PF03280 Proteobacterial lipase chaperone protein BA953_14980 PF00561 alpha/beta hydrolase fold BA953_14985 PF01053 Cys/Met metabolism PLP-dependent enzyme BA953_14990 PF13091 PLD-like domain BA953_14990 PF13396 Phospholipase_D-nuclease N-terminal BA953_14995 PF00209 Sodium:neurotransmitter symporter family BA953_15000 PF00849 RNA pseudouridylate synthase BA953_15005 PF17785 PUA-like domain BA953_15005 PF10672 S-adenosylmethionine-dependent methyltransferase BA953_15010 PF01066 CDP-alcohol phosphatidyltransferase BA953_15015 PF00005 ABC transporter BA953_15020 PF00528 Binding-protein-dependent transport system inner membrane component BA953_15035 PF06945 Protein of unknown function (DUF1289) BA953_15050 PF03795 YCII-related domain BA953_15055 PF03061 Thioesterase superfamily BA953_15060 PF04279 Intracellular septation protein A BA953_15070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_15070 PF00072 Response regulator receiver domain BA953_15075 PF00072 Response regulator receiver domain BA953_15075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_15085 PF04269 Protein of unknown function, DUF440 BA953_15090 PF08207 Elongation factor P (EF-P) KOW-like domain BA953_15090 PF01132 Elongation factor P (EF-P) OB domain BA953_15090 PF09285 Elongation factor P, C-terminal BA953_15100 PF07968 Leukocidin/Hemolysin toxin family BA953_15100 PF12563 Hemolytic toxin N terminal BA953_15100 PF16458 Beta-prism lectin BA953_15120 PF00072 Response regulator receiver domain BA953_15120 PF00196 Bacterial regulatory proteins, luxR family BA953_15125 PF02151 UvrB/uvrC motif BA953_15125 PF08459 UvrC Helix-hairpin-helix N-terminal BA953_15125 PF01541 GIY-YIG catalytic domain BA953_15130 PF01066 CDP-alcohol phosphatidyltransferase BA953_15155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BA953_15165 PF07995 Glucose / Sorbosone dehydrogenase BA953_15190 PF00990 Diguanylate cyclase, GGDEF domain BA953_15190 PF17158 Membrane-associated sensor, integral membrane domain BA953_15195 PF01409 tRNA synthetases class II core domain (F) BA953_15195 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BA953_15200 PF03483 B3/4 domain BA953_15200 PF03147 Ferredoxin-fold anticodon binding domain BA953_15200 PF01588 Putative tRNA binding domain BA953_15200 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BA953_15200 PF03484 tRNA synthetase B5 domain BA953_15250 PF03466 LysR substrate binding domain BA953_15250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_15255 PF17954 Quercetinase C-terminal cupin domain BA953_15255 PF02678 Pirin BA953_15260 PF00857 Isochorismatase family BA953_15270 PF00581 Rhodanese-like domain BA953_15275 PF00486 Transcriptional regulatory protein, C terminal BA953_15295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_15295 PF03466 LysR substrate binding domain BA953_15310 PF00672 HAMP domain BA953_15310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_15320 PF00563 EAL domain BA953_15320 PF08668 HDOD domain BA953_15330 PF01554 MatE BA953_15335 PF03466 LysR substrate binding domain BA953_15335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_15345 PF09330 D-lactate dehydrogenase, membrane binding BA953_15345 PF01565 FAD binding domain BA953_15355 PF02653 Branched-chain amino acid transport system / permease component BA953_15360 PF00005 ABC transporter BA953_15365 PF13407 Periplasmic binding protein domain BA953_15370 PF00294 pfkB family carbohydrate kinase BA953_15375 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BA953_15375 PF00205 Thiamine pyrophosphate enzyme, central domain BA953_15375 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BA953_15380 PF01261 Xylose isomerase-like TIM barrel BA953_15385 PF00171 Aldehyde dehydrogenase family BA953_15410 PF01144 Coenzyme A transferase BA953_15415 PF01144 Coenzyme A transferase BA953_15420 PF02803 Thiolase, C-terminal domain BA953_15420 PF00108 Thiolase, N-terminal domain BA953_15435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_15435 PF03466 LysR substrate binding domain BA953_15440 PF00083 Sugar (and other) transporter BA953_15450 PF01261 Xylose isomerase-like TIM barrel BA953_15455 PF00205 Thiamine pyrophosphate enzyme, central domain BA953_15455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BA953_15455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BA953_15460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BA953_15460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BA953_15465 PF00294 pfkB family carbohydrate kinase BA953_15475 PF01116 Fructose-bisphosphate aldolase class-II BA953_15490 PF04962 KduI/IolB family BA953_15495 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BA953_15495 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BA953_15505 PF00535 Glycosyl transferase family 2 BA953_15505 PF02709 N-terminal domain of galactosyltransferase BA953_15510 PF07690 Major Facilitator Superfamily BA953_15520 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BA953_15530 PF00072 Response regulator receiver domain BA953_15535 PF12848 ABC transporter BA953_15535 PF00005 ABC transporter BA953_15535 PF16326 ABC transporter C-terminal domain BA953_15545 PF00072 Response regulator receiver domain BA953_15545 PF09308 LuxQ, periplasmic BA953_15545 PF00512 His Kinase A (phospho-acceptor) domain BA953_15545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_15550 PF03150 Di-haem cytochrome c peroxidase BA953_15550 PF14376 Haem-binding domain BA953_15550 PF00034 Cytochrome c BA953_15555 PF00701 Dihydrodipicolinate synthetase family BA953_15560 PF01380 SIS domain BA953_15560 PF01418 Helix-turn-helix domain, rpiR family BA953_15565 PF01979 Amidohydrolase family BA953_15570 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase BA953_15575 PF00480 ROK family BA953_15580 PF00474 Sodium:solute symporter family BA953_15605 PF02321 Outer membrane efflux protein BA953_15615 PF00873 AcrB/AcrD/AcrF family BA953_15620 PF00072 Response regulator receiver domain BA953_15620 PF00486 Transcriptional regulatory protein, C terminal BA953_15625 PF00672 HAMP domain BA953_15625 PF00512 His Kinase A (phospho-acceptor) domain BA953_15625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_15640 PF00356 Bacterial regulatory proteins, lacI family BA953_15645 PF00474 Sodium:solute symporter family BA953_15660 PF00356 Bacterial regulatory proteins, lacI family BA953_15665 PF03328 HpcH/HpaI aldolase/citrate lyase family BA953_15685 PF12697 Alpha/beta hydrolase family BA953_15690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_15690 PF03466 LysR substrate binding domain BA953_15700 PF00171 Aldehyde dehydrogenase family BA953_15710 PF02028 BCCT, betaine/carnitine/choline family transporter BA953_15735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_15735 PF03466 LysR substrate binding domain BA953_15740 PF02311 AraC-like ligand binding domain BA953_15740 PF12833 Helix-turn-helix domain BA953_15750 PF02581 Thiamine monophosphate synthase BA953_15755 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BA953_15760 PF01810 LysE type translocator BA953_15765 PF01235 Sodium:alanine symporter family BA953_15790 PF00563 EAL domain BA953_15790 PF00990 Diguanylate cyclase, GGDEF domain BA953_15790 PF03707 Bacterial signalling protein N terminal repeat BA953_15800 PF00589 Phage integrase family BA953_15800 PF13495 Phage integrase, N-terminal SAM-like domain BA953_15845 PF00881 Nitroreductase family BA953_15850 PF02264 LamB porin BA953_15865 PF13673 Acetyltransferase (GNAT) domain BA953_15865 PF13302 Acetyltransferase (GNAT) domain BA953_15865 PF03352 Methyladenine glycosylase BA953_15865 PF00958 GMP synthase C terminal domain BA953_15865 PF00117 Glutamine amidotransferase class-I BA953_15870 PF01327 Polypeptide deformylase BA953_15895 PF07690 Major Facilitator Superfamily BA953_15900 PF13533 Biotin-lipoyl like BA953_15905 PF03466 LysR substrate binding domain BA953_15905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_15920 PF00677 Lumazine binding domain BA953_15965 PF01039 Carboxyl transferase domain BA953_15965 PF17848 Acetyl-coA carboxylase zinc finger domain BA953_15970 PF03466 LysR substrate binding domain BA953_15970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_15995 PF01386 Ribosomal L25p family BA953_16000 PF00535 Glycosyl transferase family 2 BA953_16020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_16025 PF00873 AcrB/AcrD/AcrF family BA953_16050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_16050 PF00512 His Kinase A (phospho-acceptor) domain BA953_16050 PF00672 HAMP domain BA953_16055 PF00072 Response regulator receiver domain BA953_16055 PF00486 Transcriptional regulatory protein, C terminal BA953_16065 PF04851 Type III restriction enzyme, res subunit BA953_16065 PF00271 Helicase conserved C-terminal domain BA953_16070 PF00849 RNA pseudouridylate synthase BA953_16070 PF01479 S4 domain BA953_16075 PF07690 Major Facilitator Superfamily BA953_16085 PF13460 NAD(P)H-binding BA953_16085 PF11066 Protein of unknown function (DUF2867) BA953_16090 PF01554 MatE BA953_16095 PF00005 ABC transporter BA953_16110 PF06965 Na+/H+ antiporter 1 BA953_16130 PF00202 Aminotransferase class-III BA953_16135 PF03435 Saccharopine dehydrogenase NADP binding domain BA953_16135 PF16653 Saccharopine dehydrogenase C-terminal domain BA953_16140 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BA953_16155 PF00994 Probable molybdopterin binding domain BA953_16165 PF00111 2Fe-2S iron-sulfur cluster binding domain BA953_16170 PF00268 Ribonucleotide reductase, small chain BA953_16175 PF00317 Ribonucleotide reductase, all-alpha domain BA953_16175 PF03477 ATP cone domain BA953_16175 PF02867 Ribonucleotide reductase, barrel domain BA953_16190 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BA953_16190 PF01266 FAD dependent oxidoreductase BA953_16230 PF00226 DnaJ domain BA953_16230 PF01556 DnaJ C terminal domain BA953_16230 PF00684 DnaJ central domain BA953_16240 PF03707 Bacterial signalling protein N terminal repeat BA953_16240 PF00990 Diguanylate cyclase, GGDEF domain BA953_16240 PF00563 EAL domain BA953_16240 PF13188 PAS domain BA953_16245 PF12241 Trans-2-enoyl-CoA reductase catalytic region BA953_16245 PF07055 Enoyl reductase FAD binding domain BA953_16245 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BA953_16250 PF13472 GDSL-like Lipase/Acylhydrolase family BA953_16255 PF00005 ABC transporter BA953_16265 PF01134 Glucose inhibited division protein A BA953_16270 PF02626 Carboxyltransferase domain, subdomain A and B BA953_16280 PF03746 LamB/YcsF family BA953_16285 PF16363 GDP-mannose 4,6 dehydratase BA953_16295 PF03264 NapC/NirT cytochrome c family, N-terminal region BA953_16300 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) BA953_16305 PF00384 Molybdopterin oxidoreductase BA953_16305 PF01568 Molydopterin dinucleotide binding domain BA953_16305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BA953_16315 PF13187 4Fe-4S dicluster domain BA953_16315 PF12838 4Fe-4S dicluster domain BA953_16320 PF00672 HAMP domain BA953_16320 PF07730 Histidine kinase BA953_16320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_16320 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BA953_16325 PF00196 Bacterial regulatory proteins, luxR family BA953_16325 PF00072 Response regulator receiver domain BA953_16330 PF03606 C4-dicarboxylate anaerobic carrier BA953_16335 PF00563 EAL domain BA953_16335 PF12792 CSS motif domain associated with EAL BA953_16355 PF01292 Prokaryotic cytochrome b561 BA953_16360 PF04264 YceI-like domain BA953_16365 PF01226 Formate/nitrite transporter BA953_16370 PF03466 LysR substrate binding domain BA953_16370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_16375 PF06496 Protein of unknown function (DUF1097) BA953_16380 PF11398 Protein of unknown function (DUF2813) BA953_16385 PF02872 5'-nucleotidase, C-terminal domain BA953_16385 PF00149 Calcineurin-like phosphoesterase BA953_16390 PF03741 Integral membrane protein TerC family BA953_16410 PF00563 EAL domain BA953_16410 PF03707 Bacterial signalling protein N terminal repeat BA953_16410 PF00990 Diguanylate cyclase, GGDEF domain BA953_16415 PF01817 Chorismate mutase type II BA953_16430 PF00486 Transcriptional regulatory protein, C terminal BA953_16430 PF00072 Response regulator receiver domain BA953_16435 PF09308 LuxQ, periplasmic BA953_16435 PF00072 Response regulator receiver domain BA953_16435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_16435 PF00512 His Kinase A (phospho-acceptor) domain BA953_16440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_16450 PF00561 alpha/beta hydrolase fold BA953_16465 PF01435 Peptidase family M48 BA953_16470 PF03061 Thioesterase superfamily BA953_16480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA953_16480 PF12793 Sugar transport-related sRNA regulator N-term BA953_16490 PF07715 TonB-dependent Receptor Plug Domain BA953_16490 PF00593 TonB dependent receptor BA953_16495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_16495 PF03466 LysR substrate binding domain BA953_16500 PF13380 CoA binding domain BA953_16500 PF13607 Succinyl-CoA ligase like flavodoxin domain BA953_16500 PF00583 Acetyltransferase (GNAT) family BA953_16505 PF05036 Sporulation related domain BA953_16510 PF07478 D-ala D-ala ligase C-terminus BA953_16510 PF01820 D-ala D-ala ligase N-terminus BA953_16525 PF01253 Translation initiation factor SUI1 BA953_16665 PF00486 Transcriptional regulatory protein, C terminal BA953_16665 PF00072 Response regulator receiver domain BA953_16675 PF02233 NAD(P) transhydrogenase beta subunit BA953_16680 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BA953_16680 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BA953_16680 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BA953_16695 PF00990 Diguanylate cyclase, GGDEF domain BA953_16695 PF07694 5TMR of 5TMR-LYT BA953_16700 PF00563 EAL domain BA953_16700 PF01590 GAF domain BA953_16700 PF00360 Phytochrome region BA953_16700 PF00990 Diguanylate cyclase, GGDEF domain BA953_16710 PF00005 ABC transporter BA953_16710 PF03459 TOBE domain BA953_16715 PF00528 Binding-protein-dependent transport system inner membrane component BA953_16725 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BA953_16725 PF07685 CobB/CobQ-like glutamine amidotransferase domain BA953_16740 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BA953_16740 PF00356 Bacterial regulatory proteins, lacI family BA953_16745 PF00381 PTS HPr component phosphorylation site BA953_16745 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BA953_16750 PF00294 pfkB family carbohydrate kinase BA953_16755 PF02378 Phosphotransferase system, EIIC BA953_16755 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BA953_16760 PF17158 Membrane-associated sensor, integral membrane domain BA953_16760 PF00990 Diguanylate cyclase, GGDEF domain BA953_16765 PF00483 Nucleotidyl transferase BA953_16770 PF06719 AraC-type transcriptional regulator N-terminus BA953_16770 PF12833 Helix-turn-helix domain BA953_16775 PF00465 Iron-containing alcohol dehydrogenase BA953_16790 PF00672 HAMP domain BA953_16790 PF01627 Hpt domain BA953_16790 PF00512 His Kinase A (phospho-acceptor) domain BA953_16790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_16790 PF00072 Response regulator receiver domain BA953_16795 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BA953_16800 PF02142 MGS-like domain BA953_16805 PF07702 UTRA domain BA953_16805 PF00392 Bacterial regulatory proteins, gntR family BA953_16810 PF13378 Enolase C-terminal domain-like BA953_16810 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BA953_16815 PF02378 Phosphotransferase system, EIIC BA953_16815 PF00367 phosphotransferase system, EIIB BA953_16820 PF00294 pfkB family carbohydrate kinase BA953_16825 PF01081 KDPG and KHG aldolase BA953_16835 PF13419 Haloacid dehalogenase-like hydrolase BA953_16850 PF00294 pfkB family carbohydrate kinase BA953_16855 PF13419 Haloacid dehalogenase-like hydrolase BA953_16860 PF12729 Four helix bundle sensory module for signal transduction BA953_16860 PF00672 HAMP domain BA953_16860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_16865 PF03466 LysR substrate binding domain BA953_16865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_16870 PF00291 Pyridoxal-phosphate dependent enzyme BA953_16880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA953_16885 PF00873 AcrB/AcrD/AcrF family BA953_16890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_16895 PF00583 Acetyltransferase (GNAT) family BA953_16895 PF00814 Glycoprotease family BA953_16910 PF13006 Insertion element 4 transposase N-terminal BA953_16910 PF01609 Transposase DDE domain BA953_16930 PF00270 DEAD/DEAH box helicase BA953_16930 PF00271 Helicase conserved C-terminal domain BA953_16935 PF04336 Acyl carrier protein phosphodiesterase BA953_16940 PF03222 Tryptophan/tyrosine permease family BA953_16945 PF01625 Peptide methionine sulfoxide reductase BA953_16945 PF01641 SelR domain BA953_16955 PF03880 DbpA RNA binding domain BA953_16955 PF00270 DEAD/DEAH box helicase BA953_16955 PF00271 Helicase conserved C-terminal domain BA953_16960 PF01227 GTP cyclohydrolase I BA953_16965 PF00994 Probable molybdopterin binding domain BA953_16965 PF03453 MoeA N-terminal region (domain I and II) BA953_16965 PF03454 MoeA C-terminal region (domain IV) BA953_16970 PF00899 ThiF family BA953_16980 PF00581 Rhodanese-like domain BA953_16995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_16995 PF03466 LysR substrate binding domain BA953_17005 PF00923 Transaldolase/Fructose-6-phosphate aldolase BA953_17010 PF02779 Transketolase, pyrimidine binding domain BA953_17010 PF00456 Transketolase, thiamine diphosphate binding domain BA953_17010 PF02780 Transketolase, C-terminal domain BA953_17015 PF01037 Lrp/AsnC ligand binding domain BA953_17025 PF00672 HAMP domain BA953_17025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_17030 PF07694 5TMR of 5TMR-LYT BA953_17030 PF00990 Diguanylate cyclase, GGDEF domain BA953_17040 PF00563 EAL domain BA953_17040 PF00990 Diguanylate cyclase, GGDEF domain BA953_17040 PF03707 Bacterial signalling protein N terminal repeat BA953_17045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_17045 PF00672 HAMP domain BA953_17065 PF01926 50S ribosome-binding GTPase BA953_17070 PF07683 Cobalamin synthesis protein cobW C-terminal domain BA953_17070 PF02492 CobW/HypB/UreG, nucleotide-binding domain BA953_17075 PF00654 Voltage gated chloride channel BA953_17085 PF00155 Aminotransferase class I and II BA953_17090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_17090 PF00072 Response regulator receiver domain BA953_17100 PF13476 AAA domain BA953_17105 PF12320 Type 5 capsule protein repressor C-terminal domain BA953_17105 PF00149 Calcineurin-like phosphoesterase BA953_17110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BA953_17110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BA953_17115 PF00085 Thioredoxin BA953_17205 PF07690 Major Facilitator Superfamily BA953_17220 PF00355 Rieske [2Fe-2S] domain BA953_17225 PF13806 Rieske-like [2Fe-2S] domain BA953_17225 PF18267 Rubredoxin NAD+ reductase C-terminal domain BA953_17225 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BA953_17225 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA953_17225 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BA953_17225 PF04324 BFD-like [2Fe-2S] binding domain BA953_17230 PF00005 ABC transporter BA953_17235 PF00528 Binding-protein-dependent transport system inner membrane component BA953_17240 PF00005 ABC transporter BA953_17245 PF03861 ANTAR domain BA953_17245 PF00072 Response regulator receiver domain BA953_17250 PF02885 Glycosyl transferase family, helical bundle domain BA953_17250 PF00591 Glycosyl transferase family, a/b domain BA953_17255 PF10414 Sirohaem synthase dimerisation region BA953_17255 PF14824 Sirohaem biosynthesis protein central BA953_17255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BA953_17260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BA953_17260 PF00384 Molybdopterin oxidoreductase BA953_17260 PF01568 Molydopterin dinucleotide binding domain BA953_17285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BA953_17285 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA953_17290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_17290 PF03466 LysR substrate binding domain BA953_17295 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BA953_17300 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit BA953_17305 PF04909 Amidohydrolase BA953_17310 PF04303 PrpF protein BA953_17315 PF03737 Aldolase/RraA BA953_17320 PF04909 Amidohydrolase BA953_17325 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BA953_17325 PF01488 Shikimate / quinate 5-dehydrogenase BA953_17325 PF08501 Shikimate dehydrogenase substrate binding domain BA953_17330 PF01220 Dehydroquinase class II BA953_17335 PF01261 Xylose isomerase-like TIM barrel BA953_17345 PF03547 Membrane transport protein BA953_17350 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA953_17360 PF03480 Bacterial extracellular solute-binding protein, family 7 BA953_17365 PF03466 LysR substrate binding domain BA953_17365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_17375 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BA953_17380 PF00248 Aldo/keto reductase family BA953_17390 PF04237 YjbR BA953_17400 PF13185 GAF domain BA953_17400 PF00990 Diguanylate cyclase, GGDEF domain BA953_17405 PF00672 HAMP domain BA953_17405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_17410 PF00676 Dehydrogenase E1 component BA953_17415 PF02779 Transketolase, pyrimidine binding domain BA953_17415 PF02780 Transketolase, C-terminal domain BA953_17420 PF00364 Biotin-requiring enzyme BA953_17420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BA953_17420 PF02817 e3 binding domain BA953_17425 PF00990 Diguanylate cyclase, GGDEF domain BA953_17430 PF01012 Electron transfer flavoprotein domain BA953_17430 PF00766 Electron transfer flavoprotein FAD-binding domain BA953_17435 PF01012 Electron transfer flavoprotein domain BA953_17445 PF00127 Copper binding proteins, plastocyanin/azurin family BA953_17455 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BA953_17455 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BA953_17460 PF00378 Enoyl-CoA hydratase/isomerase BA953_17465 PF00378 Enoyl-CoA hydratase/isomerase BA953_17475 PF00171 Aldehyde dehydrogenase family BA953_17480 PF02803 Thiolase, C-terminal domain BA953_17480 PF00108 Thiolase, N-terminal domain BA953_17485 PF09278 MerR, DNA binding BA953_17485 PF00376 MerR family regulatory protein BA953_17490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BA953_17490 PF02770 Acyl-CoA dehydrogenase, middle domain BA953_17490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BA953_17495 PF01039 Carboxyl transferase domain BA953_17500 PF00378 Enoyl-CoA hydratase/isomerase BA953_17505 PF00682 HMGL-like BA953_17525 PF01810 LysE type translocator BA953_17530 PF07681 DoxX BA953_17535 PF17954 Quercetinase C-terminal cupin domain BA953_17535 PF02678 Pirin BA953_17555 PF01235 Sodium:alanine symporter family BA953_17560 PF03466 LysR substrate binding domain BA953_17560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_17565 PF13460 NAD(P)H-binding BA953_17575 PF00360 Phytochrome region BA953_17575 PF00990 Diguanylate cyclase, GGDEF domain BA953_17575 PF01590 GAF domain BA953_17575 PF00563 EAL domain BA953_17590 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BA953_17590 PF18416 N-acetylglucosamine binding protein domain 2 BA953_17595 PF03150 Di-haem cytochrome c peroxidase BA953_17605 PF00579 tRNA synthetases class I (W and Y) BA953_17610 PF00551 Formyl transferase BA953_17625 PF00871 Acetokinase family BA953_17630 PF00563 EAL domain BA953_17630 PF03707 Bacterial signalling protein N terminal repeat BA953_17630 PF00990 Diguanylate cyclase, GGDEF domain BA953_17635 PF13609 Gram-negative porin BA953_17640 PF13411 MerR HTH family regulatory protein BA953_17650 PF07733 Bacterial DNA polymerase III alpha NTPase domain BA953_17650 PF02811 PHP domain BA953_17650 PF00929 Exonuclease BA953_17650 PF14579 Helix-hairpin-helix motif BA953_17650 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BA953_17655 PF02028 BCCT, betaine/carnitine/choline family transporter BA953_17660 PF01047 MarR family BA953_17665 PF00990 Diguanylate cyclase, GGDEF domain BA953_17665 PF05230 MASE2 domain BA953_17670 PF01037 Lrp/AsnC ligand binding domain BA953_17690 PF07690 Major Facilitator Superfamily BA953_17695 PF01609 Transposase DDE domain BA953_17695 PF13006 Insertion element 4 transposase N-terminal BA953_17700 PF05762 VWA domain containing CoxE-like protein BA953_17705 PF07728 AAA domain (dynein-related subfamily) BA953_17705 PF17868 AAA lid domain BA953_17705 PF12592 Protein of unknown function (DUF3763) BA953_17710 PF00293 NUDIX domain BA953_17715 PF01212 Beta-eliminating lyase BA953_17730 PF08329 Chitinase A, N-terminal domain BA953_17730 PF00704 Glycosyl hydrolases family 18 BA953_17740 PF01584 CheW-like domain BA953_17740 PF00072 Response regulator receiver domain BA953_17745 PF00990 Diguanylate cyclase, GGDEF domain BA953_17770 PF03315 Serine dehydratase beta chain BA953_17770 PF03313 Serine dehydratase alpha chain BA953_17775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_17775 PF03466 LysR substrate binding domain BA953_17780 PF01266 FAD dependent oxidoreductase BA953_17785 PF00246 Zinc carboxypeptidase BA953_17785 PF18027 Cytosolic carboxypeptidase N-terminal domain BA953_17790 PF00854 POT family BA953_17805 PF07702 UTRA domain BA953_17805 PF00392 Bacterial regulatory proteins, gntR family BA953_17810 PF00528 Binding-protein-dependent transport system inner membrane component BA953_17815 PF00005 ABC transporter BA953_17830 PF00266 Aminotransferase class-V BA953_17840 PF13419 Haloacid dehalogenase-like hydrolase BA953_17865 PF13419 Haloacid dehalogenase-like hydrolase BA953_17870 PF03466 LysR substrate binding domain BA953_17870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_17880 PF00465 Iron-containing alcohol dehydrogenase BA953_17895 PF13407 Periplasmic binding protein domain BA953_17925 PF07549 SecD/SecF GG Motif BA953_17925 PF02355 Protein export membrane protein BA953_17930 PF02355 Protein export membrane protein BA953_17930 PF13721 SecD export protein N-terminal TM region BA953_17930 PF07549 SecD/SecF GG Motif BA953_17970 PF01329 Pterin 4 alpha carbinolamine dehydratase BA953_17975 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BA953_17980 PF13193 AMP-binding enzyme C-terminal domain BA953_17980 PF00501 AMP-binding enzyme BA953_17990 PF03466 LysR substrate binding domain BA953_17990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_18000 PF00072 Response regulator receiver domain BA953_18000 PF01627 Hpt domain BA953_18000 PF00512 His Kinase A (phospho-acceptor) domain BA953_18000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_18000 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BA953_18000 PF00672 HAMP domain BA953_18005 PF09456 RcsC Alpha-Beta-Loop (ABL) BA953_18005 PF00072 Response regulator receiver domain BA953_18005 PF00512 His Kinase A (phospho-acceptor) domain BA953_18005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_18010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_18010 PF00072 Response regulator receiver domain BA953_18010 PF09456 RcsC Alpha-Beta-Loop (ABL) BA953_18010 PF00512 His Kinase A (phospho-acceptor) domain BA953_18015 PF05193 Peptidase M16 inactive domain BA953_18015 PF00675 Insulinase (Peptidase family M16) BA953_18025 PF01758 Sodium Bile acid symporter family BA953_18040 PF07687 Peptidase dimerisation domain BA953_18040 PF01546 Peptidase family M20/M25/M40 BA953_18050 PF07662 Na+ dependent nucleoside transporter C-terminus BA953_18050 PF07670 Nucleoside recognition BA953_18050 PF01773 Na+ dependent nucleoside transporter N-terminus BA953_18065 PF00194 Eukaryotic-type carbonic anhydrase BA953_18090 PF08240 Alcohol dehydrogenase GroES-like domain BA953_18090 PF00107 Zinc-binding dehydrogenase BA953_18095 PF00155 Aminotransferase class I and II BA953_18100 PF13426 PAS domain BA953_18100 PF00990 Diguanylate cyclase, GGDEF domain BA953_18100 PF00563 EAL domain BA953_18115 PF03466 LysR substrate binding domain BA953_18115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_18120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA953_18135 PF00672 HAMP domain BA953_18135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_18135 PF00512 His Kinase A (phospho-acceptor) domain BA953_18140 PF00486 Transcriptional regulatory protein, C terminal BA953_18140 PF00072 Response regulator receiver domain BA953_18145 PF00892 EamA-like transporter family BA953_18150 PF02653 Branched-chain amino acid transport system / permease component BA953_18155 PF00005 ABC transporter BA953_18170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_18170 PF00672 HAMP domain BA953_18170 PF02743 Cache domain BA953_18175 PF07726 ATPase family associated with various cellular activities (AAA) BA953_18175 PF17863 AAA lid domain BA953_18180 PF01882 Protein of unknown function DUF58 BA953_18190 PF07584 Aerotolerance regulator N-terminal BA953_18190 PF00092 von Willebrand factor type A domain BA953_18195 PF07584 Aerotolerance regulator N-terminal BA953_18195 PF13519 von Willebrand factor type A domain BA953_18210 PF00892 EamA-like transporter family BA953_18215 PF12464 Maltose acetyltransferase BA953_18215 PF14602 Hexapeptide repeat of succinyl-transferase BA953_18220 PF02566 OsmC-like protein BA953_18225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BA953_18245 PF13520 Amino acid permease BA953_18255 PF00392 Bacterial regulatory proteins, gntR family BA953_18255 PF00155 Aminotransferase class I and II BA953_18265 PF00512 His Kinase A (phospho-acceptor) domain BA953_18265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_18265 PF00672 HAMP domain BA953_18270 PF00072 Response regulator receiver domain BA953_18270 PF00486 Transcriptional regulatory protein, C terminal BA953_18295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_18295 PF00529 HlyD membrane-fusion protein of T1SS BA953_18300 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BA953_18305 PF07969 Amidohydrolase family BA953_18310 PF03741 Integral membrane protein TerC family BA953_18315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BA953_18320 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BA953_18320 PF01627 Hpt domain BA953_18320 PF00512 His Kinase A (phospho-acceptor) domain BA953_18320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_18320 PF00672 HAMP domain BA953_18320 PF00072 Response regulator receiver domain BA953_18335 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BA953_18335 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BA953_18360 PF00528 Binding-protein-dependent transport system inner membrane component BA953_18365 PF00528 Binding-protein-dependent transport system inner membrane component BA953_18365 PF14785 Maltose transport system permease protein MalF P2 domain BA953_18370 PF01547 Bacterial extracellular solute-binding protein BA953_18375 PF08402 TOBE domain BA953_18375 PF00005 ABC transporter BA953_18380 PF01923 Cobalamin adenosyltransferase BA953_18385 PF01243 Pyridoxamine 5'-phosphate oxidase BA953_18390 PF06228 Haem utilisation ChuX/HutX BA953_18395 PF04055 Radical SAM superfamily BA953_18400 PF03544 Gram-negative bacterial TonB protein C-terminal BA953_18405 PF01618 MotA/TolQ/ExbB proton channel family BA953_18410 PF02472 Biopolymer transport protein ExbD/TolR BA953_18420 PF01032 FecCD transport family BA953_18425 PF00005 ABC transporter BA953_18430 PF07690 Major Facilitator Superfamily BA953_18440 PF08525 Opacity-associated protein A N-terminal motif BA953_18440 PF01551 Peptidase family M23 BA953_18440 PF01476 LysM domain BA953_18455 PF12849 PBP superfamily domain BA953_18465 PF00773 RNB domain BA953_18465 PF08206 Ribonuclease B OB domain BA953_18465 PF00575 S1 RNA binding domain BA953_18475 PF00271 Helicase conserved C-terminal domain BA953_18475 PF00270 DEAD/DEAH box helicase BA953_18475 PF03880 DbpA RNA binding domain BA953_18485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_18485 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA953_18485 PF00512 His Kinase A (phospho-acceptor) domain BA953_18490 PF11849 Domain of unknown function (DUF3369) BA953_18495 PF00356 Bacterial regulatory proteins, lacI family BA953_18500 PF00294 pfkB family carbohydrate kinase BA953_18505 PF13407 Periplasmic binding protein domain BA953_18510 PF02653 Branched-chain amino acid transport system / permease component BA953_18515 PF00005 ABC transporter BA953_18520 PF05025 RbsD / FucU transport protein family BA953_18530 PF00704 Glycosyl hydrolases family 18 BA953_18540 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BA953_18540 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BA953_18540 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BA953_18545 PF00909 Ammonium Transporter Family BA953_18570 PF00392 Bacterial regulatory proteins, gntR family BA953_18570 PF00155 Aminotransferase class I and II BA953_18585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA953_18590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BA953_18590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BA953_18595 PF01661 Macro domain BA953_18640 PF03824 High-affinity nickel-transport protein BA953_18665 PF07504 Fungalysin/Thermolysin Propeptide Motif BA953_18665 PF03413 Peptidase propeptide and YPEB domain BA953_18665 PF01447 Thermolysin metallopeptidase, catalytic domain BA953_18665 PF04151 Bacterial pre-peptidase C-terminal domain BA953_18665 PF02868 Thermolysin metallopeptidase, alpha-helical domain BA953_18680 PF00356 Bacterial regulatory proteins, lacI family BA953_18680 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BA953_18685 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BA953_18685 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BA953_18690 PF01202 Shikimate kinase BA953_18695 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA953_18705 PF03480 Bacterial extracellular solute-binding protein, family 7 BA953_18730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_18730 PF03466 LysR substrate binding domain BA953_18735 PF00563 EAL domain BA953_18735 PF03707 Bacterial signalling protein N terminal repeat BA953_18735 PF00990 Diguanylate cyclase, GGDEF domain BA953_18750 PF03109 ABC1 family BA953_18760 PF00924 Mechanosensitive ion channel BA953_18770 PF12706 Beta-lactamase superfamily domain BA953_18780 PF02397 Bacterial sugar transferase BA953_18795 PF02706 Chain length determinant protein BA953_18795 PF13807 G-rich domain on putative tyrosine kinase BA953_18795 PF13614 AAA domain BA953_18820 PF00085 Thioredoxin BA953_18825 PF02683 Cytochrome C biogenesis protein transmembrane region BA953_18825 PF11412 Disulphide bond corrector protein DsbC BA953_18840 PF01810 LysE type translocator BA953_18845 PF12833 Helix-turn-helix domain BA953_18870 PF00012 Hsp70 protein BA953_18875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_18875 PF03466 LysR substrate binding domain BA953_18885 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BA953_18885 PF13378 Enolase C-terminal domain-like BA953_18895 PF00563 EAL domain BA953_18895 PF00990 Diguanylate cyclase, GGDEF domain BA953_18900 PF13458 Periplasmic binding protein BA953_18905 PF17158 Membrane-associated sensor, integral membrane domain BA953_18905 PF00990 Diguanylate cyclase, GGDEF domain BA953_18915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_18915 PF00512 His Kinase A (phospho-acceptor) domain BA953_18915 PF08521 Two-component sensor kinase N-terminal BA953_18920 PF00486 Transcriptional regulatory protein, C terminal BA953_18920 PF00072 Response regulator receiver domain BA953_18925 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BA953_18925 PF01648 4'-phosphopantetheinyl transferase superfamily BA953_18930 PF13533 Biotin-lipoyl like BA953_18935 PF00107 Zinc-binding dehydrogenase BA953_18935 PF16884 N-terminal domain of oxidoreductase BA953_18945 PF07690 Major Facilitator Superfamily BA953_18950 PF00501 AMP-binding enzyme BA953_18950 PF13193 AMP-binding enzyme C-terminal domain BA953_18950 PF00975 Thioesterase domain BA953_18950 PF00550 Phosphopantetheine attachment site BA953_18950 PF00668 Condensation domain BA953_18955 PF02801 Beta-ketoacyl synthase, C-terminal domain BA953_18955 PF00109 Beta-ketoacyl synthase, N-terminal domain BA953_18955 PF16197 Ketoacyl-synthetase C-terminal extension BA953_18955 PF00668 Condensation domain BA953_18955 PF00698 Acyl transferase domain BA953_18955 PF00550 Phosphopantetheine attachment site BA953_18960 PF13193 AMP-binding enzyme C-terminal domain BA953_18960 PF00550 Phosphopantetheine attachment site BA953_18960 PF00501 AMP-binding enzyme BA953_18960 PF00668 Condensation domain BA953_18965 PF13193 AMP-binding enzyme C-terminal domain BA953_18965 PF00975 Thioesterase domain BA953_18965 PF00550 Phosphopantetheine attachment site BA953_18965 PF00668 Condensation domain BA953_18965 PF00501 AMP-binding enzyme BA953_18970 PF00668 Condensation domain BA953_18970 PF13193 AMP-binding enzyme C-terminal domain BA953_18970 PF00501 AMP-binding enzyme BA953_18970 PF00550 Phosphopantetheine attachment site BA953_18970 PF00975 Thioesterase domain BA953_18975 PF00891 O-methyltransferase domain BA953_18980 PF04389 Peptidase family M28 BA953_18980 PF02225 PA domain BA953_18985 PF00128 Alpha amylase, catalytic domain BA953_18985 PF02903 Alpha amylase, N-terminal ig-like domain BA953_18985 PF16657 Maltogenic Amylase, C-terminal domain BA953_18990 PF00128 Alpha amylase, catalytic domain BA953_18990 PF02903 Alpha amylase, N-terminal ig-like domain BA953_18995 PF02371 Transposase IS116/IS110/IS902 family BA953_18995 PF01548 Transposase BA953_19015 PF01810 LysE type translocator BA953_19025 PF00072 Response regulator receiver domain BA953_19025 PF04397 LytTr DNA-binding domain BA953_19030 PF06580 Histidine kinase BA953_19030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_19030 PF07694 5TMR of 5TMR-LYT BA953_19045 PF02687 FtsX-like permease family BA953_19045 PF12704 MacB-like periplasmic core domain BA953_19050 PF00005 ABC transporter BA953_19065 PF00171 Aldehyde dehydrogenase family BA953_19070 PF03009 Glycerophosphoryl diester phosphodiesterase family BA953_19080 PF12843 Putative quorum-sensing-regulated virulence factor BA953_19095 PF00768 D-alanyl-D-alanine carboxypeptidase BA953_19095 PF07943 Penicillin-binding protein 5, C-terminal domain BA953_19115 PF03889 Alternative ribosome-rescue factor A BA953_19120 PF00313 'Cold-shock' DNA-binding domain BA953_19135 PF00175 Oxidoreductase NAD-binding domain BA953_19135 PF00970 Oxidoreductase FAD-binding domain BA953_19135 PF00042 Globin BA953_19140 PF00158 Sigma-54 interaction domain BA953_19140 PF01590 GAF domain BA953_19155 PF02525 Flavodoxin-like fold BA953_19160 PF02254 TrkA-N domain BA953_19160 PF00999 Sodium/hydrogen exchanger family BA953_19165 PF01554 MatE BA953_19175 PF00892 EamA-like transporter family BA953_19180 PF00462 Glutaredoxin BA953_19190 PF07690 Major Facilitator Superfamily BA953_19195 PF03466 LysR substrate binding domain BA953_19195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_19200 PF08448 PAS fold BA953_19200 PF00990 Diguanylate cyclase, GGDEF domain BA953_19200 PF08447 PAS fold BA953_19200 PF00563 EAL domain BA953_19215 PF02540 NAD synthase BA953_19220 PF00196 Bacterial regulatory proteins, luxR family BA953_19235 PF17945 Beta/Gamma crystallin BA953_19235 PF12561 ToxR activated gene A lipoprotein domain BA953_19250 PF03808 Glycosyl transferase WecB/TagA/CpsF family BA953_19260 PF13439 Glycosyltransferase Family 4 BA953_19270 PF00132 Bacterial transferase hexapeptide (six repeats) BA953_19290 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BA953_19290 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BA953_19290 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BA953_19295 PF02350 UDP-N-acetylglucosamine 2-epimerase BA953_19300 PF01451 Low molecular weight phosphotyrosine protein phosphatase BA953_19305 PF03605 Anaerobic c4-dicarboxylate membrane transporter BA953_19315 PF00990 Diguanylate cyclase, GGDEF domain BA953_19315 PF00360 Phytochrome region BA953_19315 PF00563 EAL domain BA953_19315 PF01590 GAF domain BA953_19320 PF00248 Aldo/keto reductase family BA953_19330 PF00128 Alpha amylase, catalytic domain BA953_19340 PF00793 DAHP synthetase I family BA953_19345 PF00005 ABC transporter BA953_19350 PF00528 Binding-protein-dependent transport system inner membrane component BA953_19355 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA953_19360 PF00528 Binding-protein-dependent transport system inner membrane component BA953_19365 PF01040 UbiA prenyltransferase family BA953_19390 PF00510 Cytochrome c oxidase subunit III BA953_19395 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 BA953_19400 PF00115 Cytochrome C and Quinol oxidase polypeptide I BA953_19405 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BA953_19405 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BA953_19415 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BA953_19415 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BA953_19415 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BA953_19415 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BA953_19420 PF00892 EamA-like transporter family BA953_19440 PF02896 PEP-utilising enzyme, TIM barrel domain BA953_19440 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BA953_19440 PF00391 PEP-utilising enzyme, mobile domain BA953_19455 PF00970 Oxidoreductase FAD-binding domain BA953_19455 PF00175 Oxidoreductase NAD-binding domain BA953_19480 PF00873 AcrB/AcrD/AcrF family BA953_19495 PF05726 Pirin C-terminal cupin domain BA953_19495 PF02678 Pirin BA953_19500 PF00132 Bacterial transferase hexapeptide (six repeats) BA953_19505 PF07690 Major Facilitator Superfamily BA953_19510 PF00768 D-alanyl-D-alanine carboxypeptidase BA953_19510 PF07943 Penicillin-binding protein 5, C-terminal domain BA953_19520 PF03466 LysR substrate binding domain BA953_19520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_19525 PF00561 alpha/beta hydrolase fold BA953_19555 PF03471 Transporter associated domain BA953_19555 PF03741 Integral membrane protein TerC family BA953_19575 PF00282 Pyridoxal-dependent decarboxylase conserved domain BA953_19580 PF00186 Dihydrofolate reductase BA953_19585 PF00440 Bacterial regulatory proteins, tetR family BA953_19585 PF02909 Tetracyclin repressor-like, C-terminal domain BA953_19590 PF03466 LysR substrate binding domain BA953_19590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_19595 PF01810 LysE type translocator BA953_19600 PF03466 LysR substrate binding domain BA953_19600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_19610 PF00472 RF-1 domain BA953_19655 PF01979 Amidohydrolase family BA953_19660 PF00132 Bacterial transferase hexapeptide (six repeats) BA953_19665 PF07683 Cobalamin synthesis protein cobW C-terminal domain BA953_19665 PF02492 CobW/HypB/UreG, nucleotide-binding domain BA953_19670 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BA953_19715 PF01047 MarR family BA953_19725 PF01810 LysE type translocator BA953_19730 PF12833 Helix-turn-helix domain BA953_19740 PF00528 Binding-protein-dependent transport system inner membrane component BA953_19745 PF08402 TOBE domain BA953_19745 PF00005 ABC transporter BA953_19750 PF00701 Dihydrodipicolinate synthetase family BA953_19755 PF02423 Ornithine cyclodeaminase/mu-crystallin family BA953_19765 PF01266 FAD dependent oxidoreductase BA953_19770 PF05544 Proline racemase BA953_19775 PF00171 Aldehyde dehydrogenase family BA953_19780 PF00392 Bacterial regulatory proteins, gntR family BA953_19780 PF07729 FCD domain BA953_19790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA953_19795 PF00528 Binding-protein-dependent transport system inner membrane component BA953_19800 PF12911 N-terminal TM domain of oligopeptide transport permease C BA953_19800 PF00528 Binding-protein-dependent transport system inner membrane component BA953_19805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA953_19805 PF00005 ABC transporter BA953_19810 PF00005 ABC transporter BA953_19810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA953_19815 PF00557 Metallopeptidase family M24 BA953_19815 PF05195 Aminopeptidase P, N-terminal domain BA953_19845 PF01752 Collagenase BA953_19845 PF04151 Bacterial pre-peptidase C-terminal domain BA953_19845 PF08453 Peptidase family M9 N-terminal BA953_19855 PF03372 Endonuclease/Exonuclease/phosphatase family BA953_19860 PF08453 Peptidase family M9 N-terminal BA953_19860 PF01752 Collagenase BA953_19865 PF00270 DEAD/DEAH box helicase BA953_19865 PF00271 Helicase conserved C-terminal domain BA953_19875 PF17969 L,D-transpeptidase C-terminal domain BA953_19875 PF03734 L,D-transpeptidase catalytic domain BA953_19875 PF01476 LysM domain BA953_19880 PF00875 DNA photolyase BA953_19880 PF03441 FAD binding domain of DNA photolyase BA953_19885 PF13411 MerR HTH family regulatory protein BA953_19890 PF08349 Protein of unknown function (DUF1722) BA953_19895 PF01048 Phosphorylase superfamily BA953_19910 PF00990 Diguanylate cyclase, GGDEF domain BA953_19920 PF11742 Protein of unknown function (DUF3302) BA953_19925 PF00529 HlyD membrane-fusion protein of T1SS BA953_19925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_19930 PF03616 Sodium/glutamate symporter BA953_19940 PF00202 Aminotransferase class-III BA953_19955 PF03466 LysR substrate binding domain BA953_19955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_19965 PF00664 ABC transporter transmembrane region BA953_19965 PF00005 ABC transporter BA953_19975 PF01037 Lrp/AsnC ligand binding domain BA953_19985 PF00474 Sodium:solute symporter family BA953_19995 PF00171 Aldehyde dehydrogenase family BA953_19995 PF14850 DNA-binding domain of Proline dehydrogenase BA953_19995 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BA953_19995 PF01619 Proline dehydrogenase BA953_20000 PF12833 Helix-turn-helix domain BA953_20010 PF03781 Sulfatase-modifying factor enzyme 1 BA953_20025 PF01243 Pyridoxamine 5'-phosphate oxidase BA953_20025 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BA953_20030 PF00529 HlyD membrane-fusion protein of T1SS BA953_20045 PF00664 ABC transporter transmembrane region BA953_20045 PF03412 Peptidase C39 family BA953_20045 PF00005 ABC transporter BA953_20050 PF08329 Chitinase A, N-terminal domain BA953_20050 PF00704 Glycosyl hydrolases family 18 BA953_20055 PF01212 Beta-eliminating lyase BA953_20060 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BA953_20065 PF01966 HD domain BA953_20070 PF13302 Acetyltransferase (GNAT) domain BA953_20080 PF02630 SCO1/SenC BA953_20090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_20090 PF03466 LysR substrate binding domain BA953_20095 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BA953_20100 PF01906 Putative heavy-metal-binding BA953_20105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_20105 PF03466 LysR substrate binding domain BA953_20110 PF07690 Major Facilitator Superfamily BA953_20125 PF00455 DeoR C terminal sensor domain BA953_20125 PF08220 DeoR-like helix-turn-helix domain BA953_20130 PF03009 Glycerophosphoryl diester phosphodiesterase family BA953_20135 PF03480 Bacterial extracellular solute-binding protein, family 7 BA953_20145 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA953_20175 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA953_20175 PF01464 Transglycosylase SLT domain BA953_20320 PF00072 Response regulator receiver domain BA953_20320 PF00158 Sigma-54 interaction domain BA953_20320 PF02954 Bacterial regulatory protein, Fis family BA953_20325 PF00375 Sodium:dicarboxylate symporter family BA953_20330 PF05922 Peptidase inhibitor I9 BA953_20330 PF04151 Bacterial pre-peptidase C-terminal domain BA953_20330 PF00082 Subtilase family BA953_20335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_20335 PF00672 HAMP domain BA953_20340 PF00563 EAL domain BA953_20340 PF12792 CSS motif domain associated with EAL BA953_20345 PF04151 Bacterial pre-peptidase C-terminal domain BA953_20345 PF00082 Subtilase family BA953_20345 PF05922 Peptidase inhibitor I9 BA953_20350 PF07715 TonB-dependent Receptor Plug Domain BA953_20350 PF00593 TonB dependent receptor BA953_20355 PF12833 Helix-turn-helix domain BA953_20380 PF02368 Bacterial Ig-like domain (group 2) BA953_20380 PF11999 Protein of unknown function (DUF3494) BA953_20385 PF00990 Diguanylate cyclase, GGDEF domain BA953_20385 PF00563 EAL domain BA953_20385 PF08448 PAS fold BA953_20390 PF04994 TfoX C-terminal domain BA953_20390 PF04993 TfoX N-terminal domain BA953_20395 PF07670 Nucleoside recognition BA953_20400 PF07670 Nucleoside recognition BA953_20405 PF03600 Citrate transporter BA953_20415 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BA953_20415 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BA953_20420 PF06029 AlkA N-terminal domain BA953_20420 PF00730 HhH-GPD superfamily base excision DNA repair protein BA953_20435 PF18415 Histidine kinase receptor ArcB trans-membrane domain BA953_20435 PF00072 Response regulator receiver domain BA953_20435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_20435 PF00989 PAS fold BA953_20435 PF01627 Hpt domain BA953_20435 PF00512 His Kinase A (phospho-acceptor) domain BA953_20440 PF00072 Response regulator receiver domain BA953_20440 PF00486 Transcriptional regulatory protein, C terminal BA953_20445 PF13533 Biotin-lipoyl like BA953_20450 PF00873 AcrB/AcrD/AcrF family BA953_20455 PF02525 Flavodoxin-like fold BA953_20460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_20460 PF03466 LysR substrate binding domain BA953_20480 PF00072 Response regulator receiver domain BA953_20480 PF00486 Transcriptional regulatory protein, C terminal BA953_20485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_20485 PF00512 His Kinase A (phospho-acceptor) domain BA953_20490 PF00939 Sodium:sulfate symporter transmembrane region BA953_20530 PF04542 Sigma-70 region 2 BA953_20530 PF08281 Sigma-70, region 4 BA953_20550 PF01042 Endoribonuclease L-PSP BA953_20560 PF01588 Putative tRNA binding domain BA953_20560 PF08264 Anticodon-binding domain of tRNA BA953_20560 PF09334 tRNA synthetases class I (M) BA953_20565 PF08240 Alcohol dehydrogenase GroES-like domain BA953_20565 PF00107 Zinc-binding dehydrogenase BA953_20570 PF03466 LysR substrate binding domain BA953_20570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_20585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_20585 PF03466 LysR substrate binding domain BA953_20595 PF00990 Diguanylate cyclase, GGDEF domain BA953_20595 PF13185 GAF domain BA953_20595 PF00563 EAL domain BA953_20605 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BA953_20605 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BA953_20605 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BA953_20605 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BA953_20610 PF08402 TOBE domain BA953_20610 PF00005 ABC transporter BA953_20615 PF00528 Binding-protein-dependent transport system inner membrane component BA953_20630 PF00480 ROK family BA953_20640 PF00534 Glycosyl transferases group 1 BA953_20670 PF01569 PAP2 superfamily BA953_20680 PF06445 GyrI-like small molecule binding domain BA953_20680 PF12833 Helix-turn-helix domain BA953_20695 PF03070 TENA/THI-4/PQQC family BA953_20700 PF09084 NMT1/THI5 like BA953_20705 PF00528 Binding-protein-dependent transport system inner membrane component BA953_20710 PF00005 ABC transporter BA953_20715 PF08543 Phosphomethylpyrimidine kinase BA953_20720 PF00248 Aldo/keto reductase family BA953_20740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_20740 PF03466 LysR substrate binding domain BA953_20750 PF14031 Putative serine dehydratase domain BA953_20750 PF01168 Alanine racemase, N-terminal domain BA953_20760 PF00905 Penicillin binding protein transpeptidase domain BA953_20760 PF03717 Penicillin-binding Protein dimerisation domain BA953_20770 PF00440 Bacterial regulatory proteins, tetR family BA953_20770 PF08361 MAATS-type transcriptional repressor, C-terminal region BA953_20775 PF00232 Glycosyl hydrolase family 1 BA953_20785 PF00582 Universal stress protein family BA953_20790 PF00005 ABC transporter BA953_20790 PF17912 MalK OB fold domain BA953_20790 PF03459 TOBE domain BA953_20795 PF13419 Haloacid dehalogenase-like hydrolase BA953_20810 PF00528 Binding-protein-dependent transport system inner membrane component BA953_20815 PF00528 Binding-protein-dependent transport system inner membrane component BA953_20820 PF03466 LysR substrate binding domain BA953_20820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_20825 PF00893 Small Multidrug Resistance protein BA953_20835 PF00529 HlyD membrane-fusion protein of T1SS BA953_20835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_20845 PF02796 Helix-turn-helix domain of resolvase BA953_20845 PF00239 Resolvase, N terminal domain BA953_20850 PF07690 Major Facilitator Superfamily BA953_20855 PF00027 Cyclic nucleotide-binding domain BA953_20855 PF13545 Crp-like helix-turn-helix domain BA953_20875 PF13419 Haloacid dehalogenase-like hydrolase BA953_20890 PF00155 Aminotransferase class I and II BA953_20910 PF00990 Diguanylate cyclase, GGDEF domain BA953_20910 PF00072 Response regulator receiver domain BA953_20920 PF02743 Cache domain BA953_20920 PF00672 HAMP domain BA953_20920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_20925 PF00072 Response regulator receiver domain BA953_20925 PF01339 CheB methylesterase BA953_20930 PF03975 CheD chemotactic sensory transduction BA953_20935 PF01739 CheR methyltransferase, SAM binding domain BA953_20935 PF03705 CheR methyltransferase, all-alpha domain BA953_20940 PF00672 HAMP domain BA953_20940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_20940 PF02203 Tar ligand binding domain homologue BA953_20945 PF01584 CheW-like domain BA953_20950 PF01584 CheW-like domain BA953_20955 PF01584 CheW-like domain BA953_20955 PF09078 CheY binding BA953_20955 PF02895 Signal transducing histidine kinase, homodimeric domain BA953_20955 PF01627 Hpt domain BA953_20955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_20960 PF00072 Response regulator receiver domain BA953_20970 PF00672 HAMP domain BA953_20970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_20975 PF13718 GNAT acetyltransferase 2 BA953_20975 PF05127 Helicase BA953_20980 PF02195 ParB-like nuclease domain BA953_20980 PF08775 ParB family BA953_20985 PF18607 ParA helix turn helix domain BA953_20985 PF13614 AAA domain BA953_21005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA953_21005 PF00005 ABC transporter BA953_21010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA953_21010 PF00005 ABC transporter BA953_21025 PF01709 Transcriptional regulator BA953_21060 PF01638 HxlR-like helix-turn-helix BA953_21075 PF08803 Putative mono-oxygenase ydhR BA953_21080 PF03466 LysR substrate binding domain BA953_21080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_21085 PF00293 NUDIX domain BA953_21090 PF13407 Periplasmic binding protein domain BA953_21100 PF00563 EAL domain BA953_21100 PF00990 Diguanylate cyclase, GGDEF domain BA953_21100 PF03707 Bacterial signalling protein N terminal repeat BA953_21105 PF00892 EamA-like transporter family BA953_21110 PF01047 MarR family BA953_21115 PF00034 Cytochrome c BA953_21135 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BA953_21135 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BA953_21140 PF03606 C4-dicarboxylate anaerobic carrier BA953_21145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_21145 PF03466 LysR substrate binding domain BA953_21155 PF01274 Malate synthase BA953_21160 PF00205 Thiamine pyrophosphate enzyme, central domain BA953_21160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BA953_21160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BA953_21165 PF01261 Xylose isomerase-like TIM barrel BA953_21170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BA953_21170 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BA953_21215 PF02653 Branched-chain amino acid transport system / permease component BA953_21225 PF00005 ABC transporter BA953_21225 PF12399 Branched-chain amino acid ATP-binding cassette transporter BA953_21230 PF00005 ABC transporter BA953_21235 PF01774 UreD urease accessory protein BA953_21240 PF00547 Urease, gamma subunit BA953_21245 PF00699 Urease beta subunit BA953_21250 PF01979 Amidohydrolase family BA953_21250 PF00449 Urease alpha-subunit, N-terminal domain BA953_21255 PF02814 UreE urease accessory protein, N-terminal domain BA953_21255 PF05194 UreE urease accessory protein, C-terminal domain BA953_21265 PF01730 UreF BA953_21270 PF02492 CobW/HypB/UreG, nucleotide-binding domain BA953_21295 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA953_21300 PF02743 Cache domain BA953_21300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_21300 PF00672 HAMP domain BA953_21305 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA953_21310 PF01380 SIS domain BA953_21310 PF01418 Helix-turn-helix domain, rpiR family BA953_21310 PF02685 Glucokinase BA953_21320 PF07969 Amidohydrolase family BA953_21330 PF00474 Sodium:solute symporter family BA953_21335 PF00294 pfkB family carbohydrate kinase BA953_21340 PF01081 KDPG and KHG aldolase BA953_21345 PF02838 Glycosyl hydrolase family 20, domain 2 BA953_21345 PF00728 Glycosyl hydrolase family 20, catalytic domain BA953_21350 PF10282 Lactonase, 7-bladed beta-propeller BA953_21360 PF06481 COX Aromatic Rich Motif BA953_21360 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BA953_21365 PF00115 Cytochrome C and Quinol oxidase polypeptide I BA953_21370 PF00510 Cytochrome c oxidase subunit III BA953_21380 PF01040 UbiA prenyltransferase family BA953_21420 PF00753 Metallo-beta-lactamase superfamily BA953_21430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_21430 PF03466 LysR substrate binding domain BA953_21435 PF00171 Aldehyde dehydrogenase family BA953_21450 PF00486 Transcriptional regulatory protein, C terminal BA953_21450 PF00072 Response regulator receiver domain BA953_21455 PF03928 Haem-degrading BA953_21465 PF06224 Winged helix DNA-binding domain BA953_21470 PF00561 alpha/beta hydrolase fold BA953_21475 PF01979 Amidohydrolase family BA953_21480 PF00860 Permease family BA953_21485 PF00860 Permease family BA953_21490 PF00576 HIUase/Transthyretin family BA953_21500 PF01014 Uricase BA953_21500 PF09349 OHCU decarboxylase BA953_21505 PF03561 Allantoicase repeat BA953_21510 PF04115 Ureidoglycolate lyase BA953_21520 PF02743 Cache domain BA953_21520 PF00672 HAMP domain BA953_21520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_21530 PF01037 Lrp/AsnC ligand binding domain BA953_21540 PF00672 HAMP domain BA953_21540 PF01627 Hpt domain BA953_21540 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BA953_21540 PF00072 Response regulator receiver domain BA953_21540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_21540 PF00512 His Kinase A (phospho-acceptor) domain BA953_21545 PF01209 ubiE/COQ5 methyltransferase family BA953_21550 PF01979 Amidohydrolase family BA953_21560 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BA953_21560 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BA953_21565 PF00941 FAD binding domain in molybdopterin dehydrogenase BA953_21565 PF03450 CO dehydrogenase flavoprotein C-terminal domain BA953_21570 PF07729 FCD domain BA953_21570 PF00392 Bacterial regulatory proteins, gntR family BA953_21585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_21590 PF02311 AraC-like ligand binding domain BA953_21590 PF12833 Helix-turn-helix domain BA953_21600 PF00313 'Cold-shock' DNA-binding domain BA953_21605 PF03795 YCII-related domain BA953_21630 PF01979 Amidohydrolase family BA953_21635 PF00082 Subtilase family BA953_21635 PF05922 Peptidase inhibitor I9 BA953_21635 PF04151 Bacterial pre-peptidase C-terminal domain BA953_21640 PF00857 Isochorismatase family BA953_21645 PF02311 AraC-like ligand binding domain BA953_21645 PF12833 Helix-turn-helix domain BA953_21650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_21650 PF00672 HAMP domain BA953_21650 PF17200 Single Cache domain 2 BA953_21665 PF00132 Bacterial transferase hexapeptide (six repeats) BA953_21670 PF10928 Protein of unknown function (DUF2810) BA953_21685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_21685 PF03466 LysR substrate binding domain BA953_21690 PF00196 Bacterial regulatory proteins, luxR family BA953_21690 PF17874 MalT-like TPR region BA953_21695 PF00343 Carbohydrate phosphorylase BA953_21700 PF02446 4-alpha-glucanotransferase BA953_21705 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BA953_21705 PF00128 Alpha amylase, catalytic domain BA953_21705 PF02806 Alpha amylase, C-terminal all-beta domain BA953_21715 PF02272 DHHA1 domain BA953_21715 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BA953_21715 PF01411 tRNA synthetases class II (A) BA953_21720 PF02016 LD-carboxypeptidase N-terminal domain BA953_21720 PF17676 LD-carboxypeptidase C-terminal domain BA953_21755 PF03466 LysR substrate binding domain BA953_21755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_21775 PF00106 short chain dehydrogenase BA953_21820 PF00892 EamA-like transporter family BA953_21840 PF00557 Metallopeptidase family M24 BA953_21860 PF02743 Cache domain BA953_21860 PF00672 HAMP domain BA953_21860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_21870 PF01638 HxlR-like helix-turn-helix BA953_21880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_21880 PF03466 LysR substrate binding domain BA953_21890 PF00672 HAMP domain BA953_21890 PF12729 Four helix bundle sensory module for signal transduction BA953_21890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_21895 PF02463 RecF/RecN/SMC N terminal domain BA953_21915 PF00881 Nitroreductase family BA953_21925 PF01418 Helix-turn-helix domain, rpiR family BA953_21925 PF01380 SIS domain BA953_21930 PF02378 Phosphotransferase system, EIIC BA953_21935 PF01074 Glycosyl hydrolases family 38 N-terminal domain BA953_21935 PF07748 Glycosyl hydrolases family 38 C-terminal domain BA953_21935 PF09261 Alpha mannosidase middle domain BA953_21940 PF00128 Alpha amylase, catalytic domain BA953_21945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BA953_21945 PF02378 Phosphotransferase system, EIIC BA953_21945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BA953_21950 PF07963 Prokaryotic N-terminal methylation motif BA953_21950 PF00114 Pilin (bacterial filament) BA953_21960 PF07690 Major Facilitator Superfamily BA953_21965 PF00005 ABC transporter BA953_21970 PF01497 Periplasmic binding protein BA953_21975 PF01032 FecCD transport family BA953_21980 PF04183 IucA / IucC family BA953_21980 PF06276 Ferric iron reductase FhuF-like transporter BA953_21990 PF06276 Ferric iron reductase FhuF-like transporter BA953_21990 PF04183 IucA / IucC family BA953_21995 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BA953_22000 PF07715 TonB-dependent Receptor Plug Domain BA953_22000 PF00593 TonB dependent receptor BA953_22005 PF02028 BCCT, betaine/carnitine/choline family transporter BA953_22015 PF13193 AMP-binding enzyme C-terminal domain BA953_22015 PF00975 Thioesterase domain BA953_22015 PF00501 AMP-binding enzyme BA953_22015 PF00550 Phosphopantetheine attachment site BA953_22015 PF00668 Condensation domain BA953_22025 PF06339 Ectoine synthase BA953_22030 PF02770 Acyl-CoA dehydrogenase, middle domain BA953_22030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BA953_22030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BA953_22035 PF01323 DSBA-like thioredoxin domain BA953_22040 PF00893 Small Multidrug Resistance protein BA953_22045 PF00893 Small Multidrug Resistance protein BA953_22050 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BA953_22070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA953_22095 PF07859 alpha/beta hydrolase fold BA953_22105 PF00005 ABC transporter BA953_22105 PF00571 CBS domain BA953_22110 PF00528 Binding-protein-dependent transport system inner membrane component BA953_22120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA953_22120 PF12793 Sugar transport-related sRNA regulator N-term BA953_22125 PF00881 Nitroreductase family BA953_22130 PF01914 MarC family integral membrane protein BA953_22140 PF01554 MatE BA953_22150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_22150 PF03466 LysR substrate binding domain BA953_22175 PF13629 Pilus formation protein N terminal region BA953_22175 PF04972 BON domain BA953_22175 PF00263 Bacterial type II and III secretion system protein BA953_22185 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BA953_22190 PF00437 Type II/IV secretion system protein BA953_22240 PF02424 ApbE family BA953_22245 PF11412 Disulphide bond corrector protein DsbC BA953_22245 PF02683 Cytochrome C biogenesis protein transmembrane region BA953_22250 PF00171 Aldehyde dehydrogenase family BA953_22255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_22255 PF03466 LysR substrate binding domain BA953_22260 PF00106 short chain dehydrogenase BA953_22265 PF00672 HAMP domain BA953_22265 PF02743 Cache domain BA953_22265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_22270 PF12849 PBP superfamily domain BA953_22275 PF00528 Binding-protein-dependent transport system inner membrane component BA953_22280 PF00528 Binding-protein-dependent transport system inner membrane component BA953_22285 PF00005 ABC transporter BA953_22290 PF03707 Bacterial signalling protein N terminal repeat BA953_22290 PF00990 Diguanylate cyclase, GGDEF domain BA953_22290 PF00563 EAL domain BA953_22300 PF00375 Sodium:dicarboxylate symporter family BA953_22305 PF03193 RsgA GTPase BA953_22325 PF12558 ATP-binding cassette cobalt transporter BA953_22325 PF00005 ABC transporter BA953_22330 PF07155 ECF-type riboflavin transporter, S component BA953_22335 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BA953_22350 PF00583 Acetyltransferase (GNAT) family BA953_22355 PF12729 Four helix bundle sensory module for signal transduction BA953_22355 PF00672 HAMP domain BA953_22355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_22360 PF07238 PilZ domain BA953_22360 PF12945 Flagellar protein YcgR BA953_22385 PF08032 RNA 2'-O ribose methyltransferase substrate binding BA953_22385 PF00588 SpoU rRNA Methylase family BA953_22390 PF00037 4Fe-4S binding domain BA953_22390 PF11953 Domain of unknown function (DUF3470) BA953_22400 PF03466 LysR substrate binding domain BA953_22400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_22405 PF01037 Lrp/AsnC ligand binding domain BA953_22430 PF01047 MarR family BA953_22435 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BA953_22440 PF03606 C4-dicarboxylate anaerobic carrier BA953_22455 PF00072 Response regulator receiver domain BA953_22455 PF00486 Transcriptional regulatory protein, C terminal BA953_22460 PF04116 Fatty acid hydroxylase superfamily BA953_22470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_22470 PF00072 Response regulator receiver domain BA953_22475 PF17327 Acyl homoserine lactone synthase BA953_22490 PF00873 AcrB/AcrD/AcrF family BA953_22510 PF03466 LysR substrate binding domain BA953_22510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_22515 PF00175 Oxidoreductase NAD-binding domain BA953_22515 PF00970 Oxidoreductase FAD-binding domain BA953_22515 PF00111 2Fe-2S iron-sulfur cluster binding domain BA953_22520 PF03063 Prismane/CO dehydrogenase family BA953_22530 PF00990 Diguanylate cyclase, GGDEF domain BA953_22530 PF07694 5TMR of 5TMR-LYT BA953_22535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_22535 PF03466 LysR substrate binding domain BA953_22550 PF03129 Anticodon binding domain BA953_22550 PF02824 TGS domain BA953_22550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BA953_22550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BA953_22555 PF00158 Sigma-54 interaction domain BA953_22555 PF01590 GAF domain BA953_22580 PF00875 DNA photolyase BA953_22580 PF03441 FAD binding domain of DNA photolyase BA953_22585 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BA953_22595 PF03992 Antibiotic biosynthesis monooxygenase BA953_22600 PF03733 Inner membrane component domain BA953_22610 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA953_22615 PF00155 Aminotransferase class I and II BA953_22620 PF03466 LysR substrate binding domain BA953_22620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_22625 PF00753 Metallo-beta-lactamase superfamily BA953_22630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA953_22640 PF01447 Thermolysin metallopeptidase, catalytic domain BA953_22640 PF03413 Peptidase propeptide and YPEB domain BA953_22640 PF07504 Fungalysin/Thermolysin Propeptide Motif BA953_22640 PF04151 Bacterial pre-peptidase C-terminal domain BA953_22640 PF02868 Thermolysin metallopeptidase, alpha-helical domain BA953_22645 PF04389 Peptidase family M28 BA953_22645 PF04151 Bacterial pre-peptidase C-terminal domain BA953_22655 PF00909 Ammonium Transporter Family BA953_22660 PF00072 Response regulator receiver domain BA953_22675 PF01266 FAD dependent oxidoreductase BA953_22680 PF00795 Carbon-nitrogen hydrolase BA953_22705 PF01551 Peptidase family M23 BA953_22705 PF01476 LysM domain BA953_22705 PF08525 Opacity-associated protein A N-terminal motif BA953_22710 PF03922 OmpW family BA953_22730 PF00082 Subtilase family BA953_22750 PF01168 Alanine racemase, N-terminal domain BA953_22770 PF05995 Cysteine dioxygenase type I BA953_22780 PF01810 LysE type translocator BA953_22785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BA953_22785 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BA953_22790 PF12848 ABC transporter BA953_22790 PF16326 ABC transporter C-terminal domain BA953_22790 PF00005 ABC transporter BA953_22820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_22820 PF00512 His Kinase A (phospho-acceptor) domain BA953_22820 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA953_22845 PF00005 ABC transporter BA953_22845 PF00664 ABC transporter transmembrane region BA953_22865 PF13417 Glutathione S-transferase, N-terminal domain BA953_22865 PF00043 Glutathione S-transferase, C-terminal domain BA953_22880 PF00472 RF-1 domain BA953_22890 PF13276 HTH-like domain BA953_22890 PF13333 Integrase core domain BA953_22890 PF00665 Integrase core domain BA953_22895 PF01527 Transposase BA953_22905 PF02347 Glycine cleavage system P-protein BA953_22915 PF00464 Serine hydroxymethyltransferase BA953_22925 PF08669 Glycine cleavage T-protein C-terminal barrel domain BA953_22925 PF01571 Aminomethyltransferase folate-binding domain BA953_22935 PF00128 Alpha amylase, catalytic domain BA953_22935 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BA953_22940 PF02264 LamB porin BA953_22950 PF17200 Single Cache domain 2 BA953_22950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_22950 PF00672 HAMP domain BA953_22955 PF12729 Four helix bundle sensory module for signal transduction BA953_22955 PF00672 HAMP domain BA953_22955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_22960 PF03466 LysR substrate binding domain BA953_22960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_22975 PF13411 MerR HTH family regulatory protein BA953_22985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_22985 PF00672 HAMP domain BA953_22985 PF12729 Four helix bundle sensory module for signal transduction BA953_22995 PF09278 MerR, DNA binding BA953_22995 PF00376 MerR family regulatory protein BA953_23020 PF00892 EamA-like transporter family BA953_23030 PF11852 Domain of unknown function (DUF3372) BA953_23030 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BA953_23030 PF17967 Pullulanase N2 domain BA953_23030 PF03714 Bacterial pullanase-associated domain BA953_23030 PF18494 Pullulanase Ins domain BA953_23050 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BA953_23050 PF14489 QueF-like protein BA953_23055 PF00797 N-acetyltransferase BA953_23060 PF01497 Periplasmic binding protein BA953_23060 PF12833 Helix-turn-helix domain BA953_23065 PF00155 Aminotransferase class I and II BA953_23075 PF01810 LysE type translocator BA953_23085 PF00392 Bacterial regulatory proteins, gntR family BA953_23085 PF00155 Aminotransferase class I and II BA953_23095 PF01037 Lrp/AsnC ligand binding domain BA953_23110 PF00672 HAMP domain BA953_23110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_23125 PF02322 Cytochrome bd terminal oxidase subunit II BA953_23130 PF01654 Cytochrome bd terminal oxidase subunit I BA953_23135 PF03116 NQR2, RnfD, RnfE family BA953_23150 PF00563 EAL domain BA953_23150 PF03707 Bacterial signalling protein N terminal repeat BA953_23150 PF00990 Diguanylate cyclase, GGDEF domain BA953_23155 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BA953_23170 PF00873 AcrB/AcrD/AcrF family BA953_23190 PF00563 EAL domain BA953_23190 PF12792 CSS motif domain associated with EAL BA953_23195 PF00072 Response regulator receiver domain BA953_23195 PF09308 LuxQ, periplasmic BA953_23195 PF00512 His Kinase A (phospho-acceptor) domain BA953_23195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_23240 PF00440 Bacterial regulatory proteins, tetR family BA953_23240 PF13977 BetI-type transcriptional repressor, C-terminal BA953_23260 PF00072 Response regulator receiver domain BA953_23260 PF00486 Transcriptional regulatory protein, C terminal BA953_23265 PF13426 PAS domain BA953_23265 PF14827 Double sensory domain of two-component sensor kinase BA953_23265 PF00512 His Kinase A (phospho-acceptor) domain BA953_23265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_23265 PF00672 HAMP domain BA953_23270 PF13673 Acetyltransferase (GNAT) domain BA953_23285 PF00512 His Kinase A (phospho-acceptor) domain BA953_23285 PF00672 HAMP domain BA953_23285 PF00072 Response regulator receiver domain BA953_23285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_23285 PF17149 Periplasmic sensor domain found in signal transduction proteins BA953_23285 PF01627 Hpt domain BA953_23310 PF00005 ABC transporter BA953_23325 PF00206 Lyase BA953_23325 PF10415 Fumarase C C-terminus BA953_23355 PF12464 Maltose acetyltransferase BA953_23355 PF14602 Hexapeptide repeat of succinyl-transferase BA953_23360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA953_23365 PF02798 Glutathione S-transferase, N-terminal domain BA953_23370 PF00701 Dihydrodipicolinate synthetase family BA953_23375 PF00480 ROK family BA953_23385 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BA953_23385 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BA953_23390 PF03480 Bacterial extracellular solute-binding protein, family 7 BA953_23395 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BA953_23400 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA953_23410 PF07729 FCD domain BA953_23410 PF00392 Bacterial regulatory proteins, gntR family BA953_23415 PF13419 Haloacid dehalogenase-like hydrolase BA953_23425 PF00128 Alpha amylase, catalytic domain BA953_23445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BA953_23445 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BA953_23450 PF00141 Peroxidase BA953_23455 PF02798 Glutathione S-transferase, N-terminal domain BA953_23455 PF00043 Glutathione S-transferase, C-terminal domain BA953_23460 PF16884 N-terminal domain of oxidoreductase BA953_23460 PF00107 Zinc-binding dehydrogenase BA953_23465 PF16925 Tetracyclin repressor-like, C-terminal domain BA953_23465 PF00440 Bacterial regulatory proteins, tetR family BA953_23470 PF07694 5TMR of 5TMR-LYT BA953_23470 PF00990 Diguanylate cyclase, GGDEF domain BA953_23490 PF00271 Helicase conserved C-terminal domain BA953_23490 PF00270 DEAD/DEAH box helicase BA953_23495 PF09339 IclR helix-turn-helix domain BA953_23495 PF01614 Bacterial transcriptional regulator BA953_23500 PF03480 Bacterial extracellular solute-binding protein, family 7 BA953_23505 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BA953_23510 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA953_23515 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BA953_23515 PF13378 Enolase C-terminal domain-like BA953_23520 PF05035 2-keto-3-deoxy-galactonokinase BA953_23525 PF01081 KDPG and KHG aldolase BA953_23535 PF00356 Bacterial regulatory proteins, lacI family BA953_23540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BA953_23550 PF03611 PTS system sugar-specific permease component BA953_23555 PF08448 PAS fold BA953_23555 PF00990 Diguanylate cyclase, GGDEF domain BA953_23555 PF05231 MASE1 BA953_23555 PF08447 PAS fold BA953_23555 PF00563 EAL domain BA953_23555 PF13426 PAS domain BA953_23560 PF07969 Amidohydrolase family BA953_23570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_23570 PF03466 LysR substrate binding domain BA953_23590 PF00158 Sigma-54 interaction domain BA953_23590 PF00072 Response regulator receiver domain BA953_23590 PF02954 Bacterial regulatory protein, Fis family BA953_23595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_23595 PF00512 His Kinase A (phospho-acceptor) domain BA953_23600 PF12849 PBP superfamily domain BA953_23605 PF00528 Binding-protein-dependent transport system inner membrane component BA953_23610 PF00528 Binding-protein-dependent transport system inner membrane component BA953_23615 PF00005 ABC transporter BA953_23620 PF12464 Maltose acetyltransferase BA953_23620 PF14602 Hexapeptide repeat of succinyl-transferase BA953_23640 PF03060 Nitronate monooxygenase BA953_23645 PF01042 Endoribonuclease L-PSP BA953_23700 PF00849 RNA pseudouridylate synthase BA953_23715 PF00756 Putative esterase BA953_23720 PF08240 Alcohol dehydrogenase GroES-like domain BA953_23720 PF00107 Zinc-binding dehydrogenase BA953_23730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_23730 PF03466 LysR substrate binding domain BA953_23735 PF07690 Major Facilitator Superfamily BA953_23750 PF01810 LysE type translocator BA953_23755 PF01037 Lrp/AsnC ligand binding domain BA953_23760 PF00267 Gram-negative porin BA953_23765 PF00672 HAMP domain BA953_23765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_23770 PF03129 Anticodon binding domain BA953_23770 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BA953_23770 PF02824 TGS domain BA953_23770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BA953_23775 PF00707 Translation initiation factor IF-3, C-terminal domain BA953_23775 PF05198 Translation initiation factor IF-3, N-terminal domain BA953_23780 PF01632 Ribosomal protein L35 BA953_23810 PF00072 Response regulator receiver domain BA953_23820 PF00171 Aldehyde dehydrogenase family BA953_23825 PF02954 Bacterial regulatory protein, Fis family BA953_23825 PF00158 Sigma-54 interaction domain BA953_23825 PF01590 GAF domain BA953_23845 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BA953_23845 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BA953_23850 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BA953_23855 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BA953_23855 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BA953_23860 PF01966 HD domain BA953_23880 PF07690 Major Facilitator Superfamily BA953_23885 PF05231 MASE1 BA953_23885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_23885 PF07730 Histidine kinase BA953_23890 PF00072 Response regulator receiver domain BA953_23890 PF00196 Bacterial regulatory proteins, luxR family BA953_23895 PF07690 Major Facilitator Superfamily BA953_23915 PF03476 MOSC N-terminal beta barrel domain BA953_23915 PF00111 2Fe-2S iron-sulfur cluster binding domain BA953_23915 PF00111 2Fe-2S iron-sulfur cluster binding domain BA953_23915 PF03476 MOSC N-terminal beta barrel domain BA953_23915 PF03473 MOSC domain BA953_23915 PF03473 MOSC domain BA953_23920 PF00196 Bacterial regulatory proteins, luxR family BA953_23920 PF03472 Autoinducer binding domain BA953_23925 PF08220 DeoR-like helix-turn-helix domain BA953_23925 PF00455 DeoR C terminal sensor domain BA953_23930 PF17151 Periplasmic sensor domain BA953_23930 PF00990 Diguanylate cyclase, GGDEF domain BA953_23950 PF05661 Protein of unknown function (DUF808) BA953_23960 PF00128 Alpha amylase, catalytic domain BA953_23995 PF08447 PAS fold BA953_23995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_24000 PF08678 Rsbr N terminal BA953_24000 PF01740 STAS domain BA953_24010 PF13581 Histidine kinase-like ATPase domain BA953_24020 PF00072 Response regulator receiver domain BA953_24020 PF01627 Hpt domain BA953_24020 PF00512 His Kinase A (phospho-acceptor) domain BA953_24020 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BA953_24020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_24020 PF00672 HAMP domain BA953_24025 PF00072 Response regulator receiver domain BA953_24040 PF01256 Carbohydrate kinase BA953_24040 PF03853 YjeF-related protein N-terminus BA953_24045 PF00478 IMP dehydrogenase / GMP reductase domain BA953_24050 PF00704 Glycosyl hydrolases family 18 BA953_24095 PF00082 Subtilase family BA953_24095 PF02225 PA domain BA953_24095 PF05922 Peptidase inhibitor I9 BA953_24095 PF13860 FlgD Ig-like domain BA953_24110 PF13977 BetI-type transcriptional repressor, C-terminal BA953_24110 PF00440 Bacterial regulatory proteins, tetR family BA953_24120 PF00732 GMC oxidoreductase BA953_24120 PF05199 GMC oxidoreductase BA953_24125 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BA953_24130 PF00528 Binding-protein-dependent transport system inner membrane component BA953_24135 PF00571 CBS domain BA953_24135 PF00005 ABC transporter BA953_24150 PF02567 Phenazine biosynthesis-like protein BA953_24155 PF01070 FMN-dependent dehydrogenase BA953_24160 PF02652 L-lactate permease BA953_24165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA953_24165 PF03466 LysR substrate binding domain BA953_24170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA953_24170 PF00005 ABC transporter BA953_24180 PF13654 AAA domain BA953_24180 PF05362 Lon protease (S16) C-terminal proteolytic domain BA953_24185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BA953_24185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BA953_24190 PF00672 HAMP domain BA953_24190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_24190 PF17200 Single Cache domain 2 BA953_24205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA953_24210 PF00528 Binding-protein-dependent transport system inner membrane component BA953_24215 PF12911 N-terminal TM domain of oligopeptide transport permease C BA953_24215 PF00528 Binding-protein-dependent transport system inner membrane component BA953_24220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA953_24220 PF00005 ABC transporter BA953_24230 PF00990 Diguanylate cyclase, GGDEF domain BA953_24230 PF00072 Response regulator receiver domain BA953_24235 PF00563 EAL domain BA953_24235 PF00990 Diguanylate cyclase, GGDEF domain BA953_24235 PF03707 Bacterial signalling protein N terminal repeat BA953_24250 PF00072 Response regulator receiver domain BA953_24250 PF00196 Bacterial regulatory proteins, luxR family BA953_24270 PF01032 FecCD transport family BA953_24275 PF01032 FecCD transport family BA953_24280 PF00005 ABC transporter BA953_24285 PF01268 Formate--tetrahydrofolate ligase BA953_24305 PF18081 Fanconi anemia-associated nuclease SAP domain BA953_24305 PF08774 VRR-NUC domain BA953_24310 PF07690 Major Facilitator Superfamily BA953_24320 PF00672 HAMP domain BA953_24320 PF17200 Single Cache domain 2 BA953_24320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA953_24325 PF00990 Diguanylate cyclase, GGDEF domain BA953_24335 PF01551 Peptidase family M23 BA953_24335 PF08525 Opacity-associated protein A N-terminal motif BA953_24335 PF01476 LysM domain BA953_24360 PF00158 Sigma-54 interaction domain BA953_24360 PF01590 GAF domain BA953_24360 PF02954 Bacterial regulatory protein, Fis family BA953_24365 PF07724 AAA domain (Cdc48 subfamily) BA953_24365 PF17871 AAA lid domain BA953_24365 PF10431 C-terminal, D2-small domain, of ClpB protein BA953_24365 PF00004 ATPase family associated with various cellular activities (AAA) BA953_24370 PF05638 Type VI secretion system effector, Hcp BA953_24375 PF04717 Type VI secretion system, phage-baseplate injector BA953_24400 PF03793 PASTA domain BA953_24400 PF00069 Protein kinase domain BA953_24435 PF01037 Lrp/AsnC ligand binding domain BA953_24475 PF02837 Glycosyl hydrolases family 2, sugar binding domain BA953_24475 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BA953_24475 PF00703 Glycosyl hydrolases family 2 BA953_24475 PF02929 Beta galactosidase small chain BA953_24475 PF16353 Domain of unknown function(DUF4981) BA953_24485 PF00356 Bacterial regulatory proteins, lacI family BA953_24490 PF08361 MAATS-type transcriptional repressor, C-terminal region BA953_24490 PF00440 Bacterial regulatory proteins, tetR family BA953_24495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_24500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA953_24505 PF00873 AcrB/AcrD/AcrF family BA953_24510 PF00106 short chain dehydrogenase BA953_24515 PF02803 Thiolase, C-terminal domain BA953_24515 PF00108 Thiolase, N-terminal domain BA953_24525 PF00561 alpha/beta hydrolase fold BA953_24525 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus BA953_24530 PF01177 Asp/Glu/Hydantoin racemase BA953_24535 PF07690 Major Facilitator Superfamily BA953_24540 PF00657 GDSL-like Lipase/Acylhydrolase BA953_24545 PF00801 PKD domain BA953_24545 PF05547 Immune inhibitor A peptidase M6 BA953_24575 PF04143 Sulphur transport BA953_24590 PF13597 Anaerobic ribonucleoside-triphosphate reductase BA953_24590 PF03477 ATP cone domain BA953_24600 PF00155 Aminotransferase class I and II BA953_24605 PF18030 RimK PreATP-grasp domain BA953_24605 PF08443 RimK-like ATP-grasp domain BA953_24615 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BA953_24615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BA953_24635 PF02754 Cysteine-rich domain BA953_24635 PF13183 4Fe-4S dicluster domain BA953_24640 PF00890 FAD binding domain BA953_24645 PF04324 BFD-like [2Fe-2S] binding domain BA953_24645 PF01266 FAD dependent oxidoreductase BA953_24650 PF00230 Major intrinsic protein BA953_24655 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BA953_24655 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BA953_24680 PF01541 GIY-YIG catalytic domain BA953_24690 PF13407 Periplasmic binding protein domain BA953_24695 PF00072 Response regulator receiver domain BA953_24695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA953_24695 PF09308 LuxQ, periplasmic BA953_24695 PF00512 His Kinase A (phospho-acceptor) domain BA953_24705 PF02796 Helix-turn-helix domain of resolvase BA953_24705 PF00239 Resolvase, N terminal domain BA953_24715 PF10415 Fumarase C C-terminus BA953_24715 PF00206 Lyase BA953_24730 PF01145 SPFH domain / Band 7 family BA953_24745 PF02371 Transposase IS116/IS110/IS902 family BA953_24745 PF01548 Transposase BA953_24770 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BA953_24800 PF13614 AAA domain BA953_24805 PF02195 ParB-like nuclease domain BA953_24805 PF08775 ParB family BA953_24810 PF07690 Major Facilitator Superfamily BA953_24825 PF01212 Beta-eliminating lyase BA953_24845 PF00665 Integrase core domain BA953_24845 PF13333 Integrase core domain BA953_24845 PF13276 HTH-like domain BA953_24850 PF01527 Transposase BA953_24870 PF00772 DnaB-like helicase N terminal domain BA953_24870 PF03796 DnaB-like helicase C terminal domain BA953_24885 PF02371 Transposase IS116/IS110/IS902 family BA953_24885 PF01548 Transposase BA953_24890 PF03440 Aerolysin/Pertussis toxin (APT) domain BA953_24890 PF01117 Aerolysin toxin BA953_24900 PF01645 Conserved region in glutamate synthase BA953_24905 PF01548 Transposase BA953_24905 PF02371 Transposase IS116/IS110/IS902 family BA953_24910 PF01526 Tn3 transposase DDE domain BA953_24910 PF13700 Domain of unknown function (DUF4158) BA953_24915 PF01526 Tn3 transposase DDE domain BA953_24915 PF13700 Domain of unknown function (DUF4158)