locus-tag class description JV59_00005 PF07687 Peptidase dimerisation domain JV59_00005 PF01546 Peptidase family M20/M25/M40 JV59_00010 PF01118 Semialdehyde dehydrogenase, NAD binding domain JV59_00010 PF02774 Semialdehyde dehydrogenase, dimerisation domain JV59_00015 PF00696 Amino acid kinase family JV59_00025 PF14698 Argininosuccinate lyase C-terminal JV59_00025 PF00206 Lyase JV59_00025 PF00583 Acetyltransferase (GNAT) family JV59_00035 PF01042 Endoribonuclease L-PSP JV59_00040 PF07992 Pyridine nucleotide-disulphide oxidoreductase JV59_00040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JV59_00045 PF00462 Glutaredoxin JV59_00045 PF08534 Redoxin JV59_00050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_00050 PF03466 LysR substrate binding domain JV59_00055 PF17092 Penicillin-binding protein OB-like domain JV59_00055 PF00905 Penicillin binding protein transpeptidase domain JV59_00055 PF00912 Transglycosylase JV59_00085 PF01202 Shikimate kinase JV59_00100 PF02086 D12 class N6 adenine-specific DNA methyltransferase JV59_00105 PF00834 Ribulose-phosphate 3 epimerase family JV59_00110 PF13419 Haloacid dehalogenase-like hydrolase JV59_00115 PF00579 tRNA synthetases class I (W and Y) JV59_00120 PF00588 SpoU rRNA Methylase family JV59_00125 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JV59_00125 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JV59_00130 PF00672 HAMP domain JV59_00130 PF00512 His Kinase A (phospho-acceptor) domain JV59_00130 PF16527 Two-component sensor protein CpxA, periplasmic domain JV59_00130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_00135 PF00486 Transcriptional regulatory protein, C terminal JV59_00135 PF00072 Response regulator receiver domain JV59_00140 PF07813 LTXXQ motif family protein JV59_00145 PF01545 Cation efflux family JV59_00145 PF16916 Dimerisation domain of Zinc Transporter JV59_00150 PF00365 Phosphofructokinase JV59_00155 PF02308 MgtC family JV59_00165 PF04055 Radical SAM superfamily JV59_00170 PF01132 Elongation factor P (EF-P) OB domain JV59_00170 PF09285 Elongation factor P, C-terminal JV59_00170 PF08207 Elongation factor P (EF-P) KOW-like domain JV59_00175 PF01040 UbiA prenyltransferase family JV59_00180 PF03737 Aldolase/RraA JV59_00185 PF01554 MatE JV59_00190 PF00121 Triosephosphate isomerase JV59_00205 PF00485 Phosphoribulokinase / Uridine kinase family JV59_00250 PF04561 RNA polymerase Rpb2, domain 2 JV59_00250 PF10385 RNA polymerase beta subunit external 1 domain JV59_00250 PF04563 RNA polymerase beta subunit JV59_00250 PF04565 RNA polymerase Rpb2, domain 3 JV59_00250 PF04560 RNA polymerase Rpb2, domain 7 JV59_00250 PF00562 RNA polymerase Rpb2, domain 6 JV59_00255 PF04997 RNA polymerase Rpb1, domain 1 JV59_00255 PF00623 RNA polymerase Rpb1, domain 2 JV59_00255 PF05000 RNA polymerase Rpb1, domain 4 JV59_00255 PF04998 RNA polymerase Rpb1, domain 5 JV59_00255 PF04983 RNA polymerase Rpb1, domain 3 JV59_00270 PF01208 Uroporphyrinogen decarboxylase (URO-D) JV59_00285 PF01551 Peptidase family M23 JV59_00290 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JV59_00290 PF01676 Metalloenzyme superfamily JV59_00300 PF17200 Single Cache domain 2 JV59_00300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_00300 PF00672 HAMP domain JV59_00305 PF02080 TrkA-C domain JV59_00305 PF03600 Citrate transporter JV59_00315 PF03193 RsgA GTPase JV59_00355 PF08331 Domain of unknown function (DUF1730) JV59_00365 PF01520 N-acetylmuramoyl-L-alanine amidase JV59_00370 PF01119 DNA mismatch repair protein, C-terminal domain JV59_00370 PF08676 MutL C terminal dimerisation domain JV59_00385 PF16360 GTP-binding GTPase Middle Region JV59_00385 PF13167 GTP-binding GTPase N-terminal JV59_00385 PF01926 50S ribosome-binding GTPase JV59_00390 PF12221 Bacterial membrane protein N terminal JV59_00390 PF01145 SPFH domain / Band 7 family JV59_00395 PF01145 SPFH domain / Band 7 family JV59_00450 PF00009 Elongation factor Tu GTP binding domain JV59_00450 PF03144 Elongation factor Tu domain 2 JV59_00450 PF03764 Elongation factor G, domain IV JV59_00450 PF00679 Elongation factor G C-terminus JV59_00450 PF14492 Elongation Factor G, domain II JV59_00500 PF00342 Phosphoglucose isomerase JV59_00550 PF07244 Surface antigen variable number repeat JV59_00550 PF01103 Surface antigen JV59_00550 PF17243 POTRA domain TamA domain 1 JV59_00555 PF04357 TamB, inner membrane protein subunit of TAM complex JV59_00650 PF00563 EAL domain JV59_00650 PF00990 Diguanylate cyclase, GGDEF domain JV59_00650 PF17157 Gammaproteobacterial periplasmic sensor domain JV59_00695 PF00482 Type II secretion system (T2SS), protein F JV59_00705 PF07963 Prokaryotic N-terminal methylation motif JV59_00705 PF00114 Pilin (bacterial filament) JV59_00745 PF04085 rod shape-determining protein MreC JV59_00750 PF04093 rod shape-determining protein MreD JV59_00755 PF02545 Maf-like protein JV59_00760 PF10150 Ribonuclease E/G family JV59_00760 PF00575 S1 RNA binding domain JV59_00765 PF13116 Protein of unknown function JV59_00765 PF13502 AsmA-like C-terminal region JV59_00770 PF00795 Carbon-nitrogen hydrolase JV59_00775 PF01523 Putative modulator of DNA gyrase JV59_00825 PF01464 Transglycosylase SLT domain JV59_00825 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JV59_00835 PF14815 NUDIX domain JV59_00835 PF00730 HhH-GPD superfamily base excision DNA repair protein JV59_00835 PF00633 Helix-hairpin-helix motif JV59_00840 PF02390 Putative methyltransferase JV59_00845 PF04960 Glutaminase JV59_00850 PF04055 Radical SAM superfamily JV59_00850 PF06969 HemN C-terminal domain JV59_00855 PF01725 Ham1 family JV59_00865 PF02899 Phage integrase, N-terminal SAM-like domain JV59_00865 PF00589 Phage integrase family JV59_00990 PF02325 YGGT family JV59_00995 PF14748 Pyrroline-5-carboxylate reductase dimerisation JV59_00995 PF03807 NADP oxidoreductase coenzyme F420-dependent JV59_01000 PF01168 Alanine racemase, N-terminal domain JV59_01005 PF00437 Type II/IV secretion system protein JV59_01010 PF00437 Type II/IV secretion system protein JV59_01020 PF02622 Uncharacterized ACR, COG1678 JV59_01025 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JV59_01025 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JV59_01030 PF04452 RNA methyltransferase JV59_01035 PF04231 Endonuclease I JV59_01040 PF17283 SprT-like zinc ribbon domain JV59_01040 PF10263 SprT-like family JV59_01050 PF02773 S-adenosylmethionine synthetase, C-terminal domain JV59_01050 PF00438 S-adenosylmethionine synthetase, N-terminal domain JV59_01050 PF02772 S-adenosylmethionine synthetase, central domain JV59_01055 PF02779 Transketolase, pyrimidine binding domain JV59_01055 PF00456 Transketolase, thiamine diphosphate binding domain JV59_01055 PF02780 Transketolase, C-terminal domain JV59_01060 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JV59_01060 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JV59_01065 PF00162 Phosphoglycerate kinase JV59_01070 PF01116 Fructose-bisphosphate aldolase class-II JV59_01075 PF05552 Conserved TM helix JV59_01075 PF00924 Mechanosensitive ion channel JV59_01080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JV59_01080 PF04073 Aminoacyl-tRNA editing domain JV59_01080 PF03129 Anticodon binding domain JV59_01085 PF01810 LysE type translocator JV59_01090 PF03466 LysR substrate binding domain JV59_01090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_01095 PF04402 Protein of unknown function (DUF541) JV59_01100 PF00990 Diguanylate cyclase, GGDEF domain JV59_01100 PF17158 Membrane-associated sensor, integral membrane domain JV59_01110 PF00224 Pyruvate kinase, barrel domain JV59_01110 PF02887 Pyruvate kinase, alpha/beta domain JV59_01115 PF00455 DeoR C terminal sensor domain JV59_01115 PF08220 DeoR-like helix-turn-helix domain JV59_01120 PF01380 SIS domain JV59_01125 PF13419 Haloacid dehalogenase-like hydrolase JV59_01130 PF05068 Mannitol repressor JV59_01135 PF08125 Mannitol dehydrogenase C-terminal domain JV59_01135 PF01232 Mannitol dehydrogenase Rossmann domain JV59_01140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JV59_01140 PF02378 Phosphotransferase system, EIIC JV59_01140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JV59_01145 PF03480 Bacterial extracellular solute-binding protein, family 7 JV59_01155 PF00348 Polyprenyl synthetase JV59_01170 PF01018 GTP1/OBG JV59_01170 PF01926 50S ribosome-binding GTPase JV59_01185 PF00186 Dihydrofolate reductase JV59_01190 PF00149 Calcineurin-like phosphoesterase JV59_01200 PF00398 Ribosomal RNA adenine dimethylase JV59_01205 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JV59_01210 PF09312 SurA N-terminal domain JV59_01215 PF03968 OstA-like protein JV59_01215 PF04453 LPS transport system D JV59_01220 PF00226 DnaJ domain JV59_01220 PF05099 Tellurite resistance protein TerB JV59_01225 PF00589 Phage integrase family JV59_01255 PF05840 Bacteriophage replication gene A protein (GPA) JV59_01265 PF02463 RecF/RecN/SMC N terminal domain JV59_01270 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JV59_01280 PF04546 Sigma-70, non-essential region JV59_01280 PF03979 Sigma-70 factor, region 1.1 JV59_01280 PF00140 Sigma-70 factor, region 1.2 JV59_01280 PF04545 Sigma-70, region 4 JV59_01280 PF04542 Sigma-70 region 2 JV59_01280 PF04539 Sigma-70 region 3 JV59_01285 PF01807 CHC2 zinc finger JV59_01285 PF08275 DNA primase catalytic core, N-terminal domain JV59_01285 PF08278 DNA primase DnaG DnaB-binding JV59_01285 PF10410 DnaB-helicase binding domain of primase JV59_01300 PF00814 Glycoprotease family JV59_01305 PF00561 alpha/beta hydrolase fold JV59_01310 PF02660 Glycerol-3-phosphate acyltransferase JV59_01320 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JV59_01335 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JV59_01340 PF02542 YgbB family JV59_01345 PF01142 tRNA pseudouridine synthase D (TruD) JV59_01350 PF01975 Survival protein SurE JV59_01360 PF01476 LysM domain JV59_01360 PF01551 Peptidase family M23 JV59_01365 PF04545 Sigma-70, region 4 JV59_01365 PF04539 Sigma-70 region 3 JV59_01365 PF04542 Sigma-70 region 2 JV59_01365 PF00140 Sigma-70 factor, region 1.2 JV59_01370 PF01595 Cyclin M transmembrane N-terminal domain JV59_01370 PF03471 Transporter associated domain JV59_01370 PF00571 CBS domain JV59_01375 PF01578 Cytochrome C assembly protein JV59_01380 PF02978 Signal peptide binding domain JV59_01380 PF00448 SRP54-type protein, GTPase domain JV59_01380 PF02881 SRP54-type protein, helical bundle domain JV59_01390 PF05239 PRC-barrel domain JV59_01390 PF01782 RimM N-terminal domain JV59_01395 PF01746 tRNA (Guanine-1)-methyltransferase JV59_01410 PF07072 Cell division protein JV59_01415 PF01121 Dephospho-CoA kinase JV59_01420 PF06750 Bacterial Peptidase A24 N-terminal domain JV59_01420 PF01478 Type IV leader peptidase family JV59_01425 PF00482 Type II secretion system (T2SS), protein F JV59_01430 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JV59_01430 PF00437 Type II/IV secretion system protein JV59_01440 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JV59_01440 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JV59_01445 PF01510 N-acetylmuramoyl-L-alanine amidase JV59_01450 PF00258 Flavodoxin JV59_01455 PF00589 Phage integrase family JV59_01455 PF02899 Phage integrase, N-terminal SAM-like domain JV59_01460 PF10411 Disulfide bond isomerase protein N-terminus JV59_01460 PF13098 Thioredoxin-like domain JV59_01465 PF02272 DHHA1 domain JV59_01465 PF01368 DHH family JV59_01465 PF17768 RecJ OB domain JV59_01470 PF07729 FCD domain JV59_01470 PF00392 Bacterial regulatory proteins, gntR family JV59_01475 PF00456 Transketolase, thiamine diphosphate binding domain JV59_01475 PF17831 Pyruvate dehydrogenase E1 component middle domain JV59_01480 PF02817 e3 binding domain JV59_01480 PF00364 Biotin-requiring enzyme JV59_01480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JV59_01485 PF07992 Pyridine nucleotide-disulphide oxidoreductase JV59_01485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JV59_01490 PF00440 Bacterial regulatory proteins, tetR family JV59_01495 PF00156 Phosphoribosyl transferase domain JV59_01500 PF00484 Carbonic anhydrase JV59_01505 PF00916 Sulfate permease family JV59_01505 PF01740 STAS domain JV59_01510 PF00005 ABC transporter JV59_01515 PF01061 ABC-2 type transporter JV59_01520 PF02569 Pantoate-beta-alanine ligase JV59_01525 PF02548 Ketopantoate hydroxymethyltransferase JV59_01530 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JV59_01535 PF01743 Poly A polymerase head domain JV59_01535 PF12627 Probable RNA and SrmB- binding site of polymerase A JV59_01535 PF12626 Polymerase A arginine-rich C-terminus JV59_01540 PF00749 tRNA synthetases class I (E and Q), catalytic domain JV59_01550 PF17746 SfsA N-terminal OB domain JV59_01550 PF03749 Sugar fermentation stimulation protein RE domain JV59_01555 PF04408 Helicase associated domain (HA2) JV59_01555 PF00271 Helicase conserved C-terminal domain JV59_01555 PF00270 DEAD/DEAH box helicase JV59_01555 PF08482 ATP-dependent helicase C-terminal JV59_01560 PF14814 Bifunctional transglycosylase second domain JV59_01560 PF00905 Penicillin binding protein transpeptidase domain JV59_01560 PF00912 Transglycosylase JV59_01565 PF01734 Patatin-like phospholipase JV59_01570 PF06434 Aconitate hydratase 2 N-terminus JV59_01570 PF00330 Aconitase family (aconitate hydratase) JV59_01570 PF11791 Aconitate B N-terminal domain JV59_01585 PF00909 Ammonium Transporter Family JV59_01590 PF13416 Bacterial extracellular solute-binding protein JV59_01600 PF00005 ABC transporter JV59_01605 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JV59_01605 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JV59_01605 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JV59_01605 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JV59_01610 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain JV59_01610 PF06165 Glycosyltransferase family 36 JV59_01615 PF02838 Glycosyl hydrolase family 20, domain 2 JV59_01615 PF00728 Glycosyl hydrolase family 20, catalytic domain JV59_01620 PF01869 BadF/BadG/BcrA/BcrD ATPase family JV59_01630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_01630 PF00005 ABC transporter JV59_01635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_01635 PF00005 ABC transporter JV59_01640 PF00528 Binding-protein-dependent transport system inner membrane component JV59_01640 PF12911 N-terminal TM domain of oligopeptide transport permease C JV59_01645 PF00528 Binding-protein-dependent transport system inner membrane component JV59_01650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JV59_01655 PF00512 His Kinase A (phospho-acceptor) domain JV59_01655 PF09308 LuxQ, periplasmic JV59_01655 PF00072 Response regulator receiver domain JV59_01655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_01660 PF08468 Methyltransferase small domain N-terminal JV59_01660 PF05175 Methyltransferase small domain JV59_01665 PF01594 AI-2E family transporter JV59_01670 PF00202 Aminotransferase class-III JV59_01680 PF00529 HlyD membrane-fusion protein of T1SS JV59_01680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JV59_01685 PF00873 AcrB/AcrD/AcrF family JV59_01690 PF08525 Opacity-associated protein A N-terminal motif JV59_01690 PF01476 LysM domain JV59_01690 PF01551 Peptidase family M23 JV59_01695 PF00579 tRNA synthetases class I (W and Y) JV59_01705 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JV59_01710 PF13609 Gram-negative porin JV59_01715 PF01272 Transcription elongation factor, GreA/GreB, C-term JV59_01715 PF03449 Transcription elongation factor, N-terminal JV59_01725 PF01728 FtsJ-like methyltransferase JV59_01730 PF01434 Peptidase family M41 JV59_01730 PF00004 ATPase family associated with various cellular activities (AAA) JV59_01730 PF17862 AAA+ lid domain JV59_01730 PF06480 FtsH Extracellular JV59_01735 PF00809 Pterin binding enzyme JV59_01740 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JV59_01740 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JV59_01740 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JV59_01740 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JV59_01760 PF16658 Class II release factor RF3, C-terminal domain JV59_01760 PF00009 Elongation factor Tu GTP binding domain JV59_01760 PF03144 Elongation factor Tu domain 2 JV59_01765 PF00271 Helicase conserved C-terminal domain JV59_01765 PF00270 DEAD/DEAH box helicase JV59_01770 PF05175 Methyltransferase small domain JV59_01775 PF05525 Branched-chain amino acid transport protein JV59_01780 PF00472 RF-1 domain JV59_01780 PF03462 PCRF domain JV59_01785 PF00152 tRNA synthetases class II (D, K and N) JV59_01785 PF01336 OB-fold nucleic acid binding domain JV59_01800 PF03707 Bacterial signalling protein N terminal repeat JV59_01800 PF00563 EAL domain JV59_01800 PF00990 Diguanylate cyclase, GGDEF domain JV59_01810 PF13508 Acetyltransferase (GNAT) domain JV59_01815 PF03840 Preprotein translocase SecG subunit JV59_01830 PF02576 RimP N-terminal domain JV59_01830 PF17384 RimP C-terminal SH3 domain JV59_01835 PF08529 NusA N-terminal domain JV59_01835 PF00575 S1 RNA binding domain JV59_01835 PF13184 NusA-like KH domain JV59_01840 PF08364 Bacterial translation initiation factor IF-2 associated region JV59_01840 PF11987 Translation-initiation factor 2 JV59_01840 PF04760 Translation initiation factor IF-2, N-terminal region JV59_01840 PF00009 Elongation factor Tu GTP binding domain JV59_01845 PF02033 Ribosome-binding factor A JV59_01850 PF09157 Pseudouridine synthase II TruB, C-terminal JV59_01850 PF16198 tRNA pseudouridylate synthase B C-terminal domain JV59_01850 PF01509 TruB family pseudouridylate synthase (N terminal domain) JV59_01860 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JV59_01860 PF07992 Pyridine nucleotide-disulphide oxidoreductase JV59_01865 PF04898 Glutamate synthase central domain JV59_01865 PF01645 Conserved region in glutamate synthase JV59_01865 PF00310 Glutamine amidotransferases class-II JV59_01865 PF01493 GXGXG motif JV59_01870 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JV59_01870 PF07992 Pyridine nucleotide-disulphide oxidoreductase JV59_01875 PF01493 GXGXG motif JV59_01875 PF01645 Conserved region in glutamate synthase JV59_01875 PF04898 Glutamate synthase central domain JV59_01875 PF00310 Glutamine amidotransferases class-II JV59_01880 PF16199 Radical_SAM C-terminal domain JV59_01880 PF04055 Radical SAM superfamily JV59_01885 PF00563 EAL domain JV59_01885 PF01590 GAF domain JV59_01885 PF00990 Diguanylate cyclase, GGDEF domain JV59_01885 PF00360 Phytochrome region JV59_01890 PF00512 His Kinase A (phospho-acceptor) domain JV59_01890 PF18415 Histidine kinase receptor ArcB trans-membrane domain JV59_01890 PF01627 Hpt domain JV59_01890 PF00989 PAS fold JV59_01890 PF00072 Response regulator receiver domain JV59_01890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_01900 PF02321 Outer membrane efflux protein JV59_01905 PF00293 NUDIX domain JV59_01910 PF06853 Protein of unknown function (DUF1249) JV59_01915 PF00149 Calcineurin-like phosphoesterase JV59_01920 PF05728 Uncharacterised protein family (UPF0227) JV59_01925 PF00204 DNA gyrase B JV59_01925 PF00986 DNA gyrase B subunit, carboxyl terminus JV59_01925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_01925 PF01751 Toprim domain JV59_01930 PF03989 DNA gyrase C-terminal domain, beta-propeller JV59_01930 PF00521 DNA gyrase/topoisomerase IV, subunit A JV59_01935 PF13180 PDZ domain JV59_01940 PF00595 PDZ domain JV59_01945 PF06295 Protein of unknown function (DUF1043) JV59_01950 PF03969 AFG1-like ATPase JV59_01955 PF00572 Ribosomal protein L13 JV59_01960 PF00380 Ribosomal protein S9/S16 JV59_01965 PF00355 Rieske [2Fe-2S] domain JV59_01965 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JV59_01970 PF00033 Cytochrome b/b6/petB JV59_01970 PF00032 Cytochrome b(C-terminal)/b6/petD JV59_01975 PF02167 Cytochrome C1 family JV59_01980 PF00043 Glutathione S-transferase, C-terminal domain JV59_01980 PF02798 Glutathione S-transferase, N-terminal domain JV59_01985 PF04386 Stringent starvation protein B JV59_01990 PF04972 BON domain JV59_01995 PF13580 SIS domain JV59_02000 PF02021 Uncharacterised protein family UPF0102 JV59_02010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JV59_02015 PF01795 MraW methylase family JV59_02020 PF04999 Cell division protein FtsL JV59_02025 PF03717 Penicillin-binding Protein dimerisation domain JV59_02025 PF00905 Penicillin binding protein transpeptidase domain JV59_02030 PF08245 Mur ligase middle domain JV59_02030 PF01225 Mur ligase family, catalytic domain JV59_02030 PF02875 Mur ligase family, glutamate ligase domain JV59_02035 PF08245 Mur ligase middle domain JV59_02035 PF02875 Mur ligase family, glutamate ligase domain JV59_02035 PF01225 Mur ligase family, catalytic domain JV59_02040 PF00953 Glycosyl transferase family 4 JV59_02040 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JV59_02045 PF08245 Mur ligase middle domain JV59_02045 PF02875 Mur ligase family, glutamate ligase domain JV59_02050 PF01098 Cell cycle protein JV59_02055 PF04101 Glycosyltransferase family 28 C-terminal domain JV59_02055 PF03033 Glycosyltransferase family 28 N-terminal domain JV59_02060 PF02875 Mur ligase family, glutamate ligase domain JV59_02060 PF01225 Mur ligase family, catalytic domain JV59_02060 PF08245 Mur ligase middle domain JV59_02070 PF02491 SHS2 domain inserted in FTSA JV59_02075 PF00091 Tubulin/FtsZ family, GTPase domain JV59_02075 PF12327 FtsZ family, C-terminal domain JV59_02085 PF07516 SecA Wing and Scaffold domain JV59_02085 PF02810 SEC-C motif JV59_02085 PF01043 SecA preprotein cross-linking domain JV59_02085 PF07517 SecA DEAD-like domain JV59_02100 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JV59_02100 PF00117 Glutamine amidotransferase class-I JV59_02145 PF01235 Sodium:alanine symporter family JV59_02160 PF01773 Na+ dependent nucleoside transporter N-terminus JV59_02160 PF07670 Nucleoside recognition JV59_02160 PF07662 Na+ dependent nucleoside transporter C-terminus JV59_02175 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JV59_02175 PF00591 Glycosyl transferase family, a/b domain JV59_02175 PF02885 Glycosyl transferase family, helical bundle domain JV59_02180 PF01676 Metalloenzyme superfamily JV59_02195 PF18429 Domain of unknown function (DUF5609) JV59_02205 PF18073 Rubredoxin metal binding domain JV59_02210 PF00266 Aminotransferase class-V JV59_02245 PF07690 Major Facilitator Superfamily JV59_02260 PF05175 Methyltransferase small domain JV59_02270 PF11973 NQRA C-terminal domain JV59_02270 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) JV59_02275 PF03116 NQR2, RnfD, RnfE family JV59_02295 PF00175 Oxidoreductase NAD-binding domain JV59_02295 PF00111 2Fe-2S iron-sulfur cluster binding domain JV59_02295 PF00970 Oxidoreductase FAD-binding domain JV59_02300 PF02424 ApbE family JV59_02310 PF00990 Diguanylate cyclase, GGDEF domain JV59_02310 PF00072 Response regulator receiver domain JV59_02315 PF00817 impB/mucB/samB family JV59_02315 PF11799 impB/mucB/samB family C-terminal domain JV59_02315 PF11798 IMS family HHH motif JV59_02320 PF00570 HRDC domain JV59_02320 PF00271 Helicase conserved C-terminal domain JV59_02320 PF09382 RQC domain JV59_02320 PF00270 DEAD/DEAH box helicase JV59_02320 PF16124 RecQ zinc-binding JV59_02335 PF06483 Chitinase C JV59_02335 PF00704 Glycosyl hydrolases family 18 JV59_02340 PF00209 Sodium:neurotransmitter symporter family JV59_02360 PF01546 Peptidase family M20/M25/M40 JV59_02360 PF07687 Peptidase dimerisation domain JV59_02365 PF00860 Permease family JV59_02385 PF00696 Amino acid kinase family JV59_02385 PF01472 PUA domain JV59_02390 PF00171 Aldehyde dehydrogenase family JV59_02400 PF01872 RibD C-terminal domain JV59_02400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JV59_02410 PF00925 GTP cyclohydrolase II JV59_02410 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JV59_02440 PF01966 HD domain JV59_02440 PF08335 GlnD PII-uridylyltransferase JV59_02440 PF01842 ACT domain JV59_02440 PF01909 Nucleotidyltransferase domain JV59_02480 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JV59_02480 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JV59_02480 PF13288 DXP reductoisomerase C-terminal domain JV59_02485 PF02163 Peptidase family M50 JV59_02485 PF17820 PDZ domain JV59_02490 PF07244 Surface antigen variable number repeat JV59_02490 PF01103 Surface antigen JV59_02500 PF00132 Bacterial transferase hexapeptide (six repeats) JV59_02500 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JV59_02515 PF02684 Lipid-A-disaccharide synthetase JV59_02525 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JV59_02525 PF07733 Bacterial DNA polymerase III alpha NTPase domain JV59_02525 PF01336 OB-fold nucleic acid binding domain JV59_02525 PF02811 PHP domain JV59_02525 PF14579 Helix-hairpin-helix motif JV59_02535 PF09179 TilS substrate binding domain JV59_02535 PF11734 TilS substrate C-terminal domain JV59_02535 PF01171 PP-loop family JV59_02560 PF01464 Transglycosylase SLT domain JV59_02560 PF01476 LysM domain JV59_02590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JV59_02590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JV59_02590 PF09317 Domain of unknown function (DUF1974) JV59_02590 PF02770 Acyl-CoA dehydrogenase, middle domain JV59_02605 PF03129 Anticodon binding domain JV59_02605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JV59_02605 PF04073 Aminoacyl-tRNA editing domain JV59_02625 PF03806 AbgT putative transporter family JV59_02645 PF09383 NIL domain JV59_02645 PF00005 ABC transporter JV59_02665 PF00367 phosphotransferase system, EIIB JV59_02665 PF02378 Phosphotransferase system, EIIC JV59_02670 PF00128 Alpha amylase, catalytic domain JV59_02670 PF16657 Maltogenic Amylase, C-terminal domain JV59_02695 PF00873 AcrB/AcrD/AcrF family JV59_02750 PF03717 Penicillin-binding Protein dimerisation domain JV59_02750 PF00905 Penicillin binding protein transpeptidase domain JV59_02775 PF08264 Anticodon-binding domain of tRNA JV59_02775 PF00133 tRNA synthetases class I (I, L, M and V) JV59_02775 PF13603 Leucyl-tRNA synthetase, Domain 2 JV59_02785 PF00795 Carbon-nitrogen hydrolase JV59_02805 PF01938 TRAM domain JV59_02805 PF00919 Uncharacterized protein family UPF0004 JV59_02805 PF04055 Radical SAM superfamily JV59_02820 PF05524 PEP-utilising enzyme, N-terminal JV59_02820 PF02896 PEP-utilising enzyme, TIM barrel domain JV59_02820 PF00391 PEP-utilising enzyme, mobile domain JV59_02930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_02930 PF00183 Hsp90 protein JV59_02960 PF00403 Heavy-metal-associated domain JV59_02975 PF00749 tRNA synthetases class I (E and Q), catalytic domain JV59_03115 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JV59_03115 PF07196 Flagellin hook IN motif JV59_03210 PF00472 RF-1 domain JV59_03210 PF03462 PCRF domain JV59_03220 PF13369 Transglutaminase-like superfamily JV59_04580 PF00561 alpha/beta hydrolase fold JV59_04580 PF00106 short chain dehydrogenase JV59_05005 PF00990 Diguanylate cyclase, GGDEF domain JV59_05005 PF17158 Membrane-associated sensor, integral membrane domain JV59_05010 PF01409 tRNA synthetases class II core domain (F) JV59_05010 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JV59_05345 PF00294 pfkB family carbohydrate kinase JV59_05465 PF00356 Bacterial regulatory proteins, lacI family JV59_05500 PF00356 Bacterial regulatory proteins, lacI family JV59_06345 PF02595 Glycerate kinase family JV59_06385 PF00501 AMP-binding enzyme JV59_06385 PF13193 AMP-binding enzyme C-terminal domain JV59_06385 PF00668 Condensation domain JV59_06385 PF00550 Phosphopantetheine attachment site JV59_06435 PF13439 Glycosyltransferase Family 4 JV59_06435 PF00534 Glycosyl transferases group 1 JV59_06470 PF00534 Glycosyl transferases group 1 JV59_06470 PF13439 Glycosyltransferase Family 4 JV59_06840 PF13416 Bacterial extracellular solute-binding protein JV59_06880 PF00582 Universal stress protein family JV59_07555 PF04055 Radical SAM superfamily JV59_08285 PF13488 Glycine zipper JV59_08285 PF00691 OmpA family JV59_08455 PF08212 Lipocalin-like domain JV59_08970 PF01300 Telomere recombination JV59_09510 PF00497 Bacterial extracellular solute-binding proteins, family 3 JV59_09515 PF00005 ABC transporter JV59_10105 PF12697 Alpha/beta hydrolase family JV59_10450 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JV59_10720 PF03379 CcmB protein JV59_10845 PF00950 ABC 3 transport family JV59_11835 PF03976 Polyphosphate kinase 2 (PPK2) JV59_11870 PF00005 ABC transporter JV59_13275 PF02965 Vitamin B12 dependent methionine synthase, activation domain JV59_13275 PF00809 Pterin binding enzyme JV59_13275 PF02574 Homocysteine S-methyltransferase JV59_13275 PF02607 B12 binding domain JV59_13275 PF02310 B12 binding domain JV59_13570 PF00238 Ribosomal protein L14p/L23e JV59_13840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JV59_13840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JV59_13905 PF13193 AMP-binding enzyme C-terminal domain JV59_13905 PF16177 Acetyl-coenzyme A synthetase N-terminus JV59_13905 PF00501 AMP-binding enzyme JV59_13965 PF00571 CBS domain JV59_13965 PF01595 Cyclin M transmembrane N-terminal domain JV59_14210 PF00953 Glycosyl transferase family 4 JV59_14260 PF16254 Domain of unknown function (DUF4910) JV59_14260 PF16221 winged helix-turn-helix JV59_14260 PF09940 Domain of unknown function (DUF2172) JV59_15940 PF00557 Metallopeptidase family M24 JV59_15940 PF05195 Aminopeptidase P, N-terminal domain JV59_15945 PF00005 ABC transporter JV59_15945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_15950 PF00005 ABC transporter JV59_15950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_15955 PF12911 N-terminal TM domain of oligopeptide transport permease C JV59_15955 PF00528 Binding-protein-dependent transport system inner membrane component JV59_15960 PF00528 Binding-protein-dependent transport system inner membrane component JV59_15965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JV59_15975 PF07729 FCD domain JV59_15975 PF00392 Bacterial regulatory proteins, gntR family JV59_15980 PF00171 Aldehyde dehydrogenase family JV59_15985 PF05544 Proline racemase JV59_15990 PF01266 FAD dependent oxidoreductase JV59_16000 PF02423 Ornithine cyclodeaminase/mu-crystallin family JV59_16005 PF00701 Dihydrodipicolinate synthetase family JV59_16010 PF00005 ABC transporter JV59_16010 PF08402 TOBE domain JV59_16015 PF00528 Binding-protein-dependent transport system inner membrane component JV59_16025 PF12833 Helix-turn-helix domain JV59_16030 PF01810 LysE type translocator JV59_16040 PF01047 MarR family JV59_16085 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JV59_16090 PF07683 Cobalamin synthesis protein cobW C-terminal domain JV59_16090 PF02492 CobW/HypB/UreG, nucleotide-binding domain JV59_16095 PF00132 Bacterial transferase hexapeptide (six repeats) JV59_16100 PF01979 Amidohydrolase family JV59_16145 PF00472 RF-1 domain JV59_16155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_16155 PF03466 LysR substrate binding domain JV59_16160 PF01810 LysE type translocator JV59_16165 PF03466 LysR substrate binding domain JV59_16165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_16170 PF02909 Tetracyclin repressor-like, C-terminal domain JV59_16170 PF00440 Bacterial regulatory proteins, tetR family JV59_16180 PF00282 Pyridoxal-dependent decarboxylase conserved domain JV59_16200 PF03471 Transporter associated domain JV59_16200 PF03741 Integral membrane protein TerC family JV59_16230 PF00561 alpha/beta hydrolase fold JV59_16235 PF03466 LysR substrate binding domain JV59_16235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_16240 PF01225 Mur ligase family, catalytic domain JV59_16240 PF08245 Mur ligase middle domain JV59_16240 PF02875 Mur ligase family, glutamate ligase domain JV59_16245 PF00768 D-alanyl-D-alanine carboxypeptidase JV59_16245 PF07943 Penicillin-binding protein 5, C-terminal domain JV59_16250 PF07690 Major Facilitator Superfamily JV59_16255 PF00132 Bacterial transferase hexapeptide (six repeats) JV59_16260 PF02678 Pirin JV59_16260 PF05726 Pirin C-terminal cupin domain JV59_16275 PF00873 AcrB/AcrD/AcrF family JV59_16300 PF00970 Oxidoreductase FAD-binding domain JV59_16300 PF00175 Oxidoreductase NAD-binding domain JV59_16315 PF00391 PEP-utilising enzyme, mobile domain JV59_16315 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JV59_16315 PF02896 PEP-utilising enzyme, TIM barrel domain JV59_16335 PF00892 EamA-like transporter family JV59_16340 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JV59_16340 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JV59_16340 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JV59_16340 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JV59_16350 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JV59_16350 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JV59_16360 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JV59_16385 PF02628 Cytochrome oxidase assembly protein JV59_16390 PF01040 UbiA prenyltransferase family JV59_16395 PF00528 Binding-protein-dependent transport system inner membrane component JV59_16400 PF00497 Bacterial extracellular solute-binding proteins, family 3 JV59_16405 PF00528 Binding-protein-dependent transport system inner membrane component JV59_16410 PF00005 ABC transporter JV59_16415 PF00793 DAHP synthetase I family JV59_16425 PF00128 Alpha amylase, catalytic domain JV59_16435 PF00248 Aldo/keto reductase family JV59_16440 PF00360 Phytochrome region JV59_16440 PF00990 Diguanylate cyclase, GGDEF domain JV59_16440 PF01590 GAF domain JV59_16440 PF00563 EAL domain JV59_16455 PF03605 Anaerobic c4-dicarboxylate membrane transporter JV59_16460 PF01451 Low molecular weight phosphotyrosine protein phosphatase JV59_16465 PF02350 UDP-N-acetylglucosamine 2-epimerase JV59_16470 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JV59_16470 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JV59_16470 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JV59_16475 PF00534 Glycosyl transferases group 1 JV59_16490 PF00132 Bacterial transferase hexapeptide (six repeats) JV59_16500 PF00534 Glycosyl transferases group 1 JV59_16500 PF13439 Glycosyltransferase Family 4 JV59_16510 PF03808 Glycosyl transferase WecB/TagA/CpsF family JV59_16550 PF12563 Hemolytic toxin N terminal JV59_16550 PF16458 Beta-prism lectin JV59_16550 PF07968 Leukocidin/Hemolysin toxin family JV59_16565 PF00196 Bacterial regulatory proteins, luxR family JV59_16585 PF08448 PAS fold JV59_16585 PF00563 EAL domain JV59_16585 PF00990 Diguanylate cyclase, GGDEF domain JV59_16585 PF08447 PAS fold JV59_16590 PF03466 LysR substrate binding domain JV59_16590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_16595 PF07690 Major Facilitator Superfamily JV59_16605 PF00462 Glutaredoxin JV59_16610 PF00892 EamA-like transporter family JV59_16620 PF01554 MatE JV59_16625 PF00999 Sodium/hydrogen exchanger family JV59_16625 PF02254 TrkA-N domain JV59_16630 PF02525 Flavodoxin-like fold JV59_16635 PF13419 Haloacid dehalogenase-like hydrolase JV59_16650 PF00970 Oxidoreductase FAD-binding domain JV59_16650 PF00042 Globin JV59_16650 PF00175 Oxidoreductase NAD-binding domain JV59_16665 PF00313 'Cold-shock' DNA-binding domain JV59_16670 PF03889 Alternative ribosome-rescue factor A JV59_16685 PF07943 Penicillin-binding protein 5, C-terminal domain JV59_16685 PF00768 D-alanyl-D-alanine carboxypeptidase JV59_16700 PF12843 Putative quorum-sensing-regulated virulence factor JV59_16720 PF00171 Aldehyde dehydrogenase family JV59_16735 PF00005 ABC transporter JV59_16740 PF12704 MacB-like periplasmic core domain JV59_16740 PF02687 FtsX-like permease family JV59_16755 PF07694 5TMR of 5TMR-LYT JV59_16755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_16755 PF06580 Histidine kinase JV59_16760 PF00072 Response regulator receiver domain JV59_16760 PF04397 LytTr DNA-binding domain JV59_16770 PF01810 LysE type translocator JV59_16790 PF02903 Alpha amylase, N-terminal ig-like domain JV59_16790 PF00128 Alpha amylase, catalytic domain JV59_16795 PF00128 Alpha amylase, catalytic domain JV59_16795 PF02903 Alpha amylase, N-terminal ig-like domain JV59_16795 PF16657 Maltogenic Amylase, C-terminal domain JV59_16800 PF04389 Peptidase family M28 JV59_16800 PF02225 PA domain JV59_16805 PF00528 Binding-protein-dependent transport system inner membrane component JV59_16810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JV59_16815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_16815 PF00005 ABC transporter JV59_16820 PF00005 ABC transporter JV59_16820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_16825 PF01554 MatE JV59_16830 PF13186 Iron-sulfur cluster-binding domain JV59_16830 PF04055 Radical SAM superfamily JV59_16840 PF00891 O-methyltransferase domain JV59_16845 PF13193 AMP-binding enzyme C-terminal domain JV59_16845 PF00550 Phosphopantetheine attachment site JV59_16845 PF00975 Thioesterase domain JV59_16845 PF00501 AMP-binding enzyme JV59_16845 PF00668 Condensation domain JV59_16850 PF00550 Phosphopantetheine attachment site JV59_16850 PF13193 AMP-binding enzyme C-terminal domain JV59_16850 PF00668 Condensation domain JV59_16850 PF00501 AMP-binding enzyme JV59_16855 PF00501 AMP-binding enzyme JV59_16855 PF13193 AMP-binding enzyme C-terminal domain JV59_16855 PF00668 Condensation domain JV59_16855 PF00550 Phosphopantetheine attachment site JV59_16860 PF00109 Beta-ketoacyl synthase, N-terminal domain JV59_16860 PF00698 Acyl transferase domain JV59_16860 PF02801 Beta-ketoacyl synthase, C-terminal domain JV59_16860 PF00550 Phosphopantetheine attachment site JV59_16860 PF00668 Condensation domain JV59_16860 PF16197 Ketoacyl-synthetase C-terminal extension JV59_16865 PF00975 Thioesterase domain JV59_16865 PF00550 Phosphopantetheine attachment site JV59_16865 PF00668 Condensation domain JV59_16865 PF13193 AMP-binding enzyme C-terminal domain JV59_16865 PF00501 AMP-binding enzyme JV59_16870 PF07690 Major Facilitator Superfamily JV59_16880 PF16884 N-terminal domain of oxidoreductase JV59_16880 PF00107 Zinc-binding dehydrogenase JV59_16885 PF13533 Biotin-lipoyl like JV59_16890 PF01648 4'-phosphopantetheinyl transferase superfamily JV59_16890 PF17837 4'-phosphopantetheinyl transferase N-terminal domain JV59_16895 PF00072 Response regulator receiver domain JV59_16895 PF00486 Transcriptional regulatory protein, C terminal JV59_16900 PF08521 Two-component sensor kinase N-terminal JV59_16900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_16900 PF00512 His Kinase A (phospho-acceptor) domain JV59_16910 PF17158 Membrane-associated sensor, integral membrane domain JV59_16910 PF00990 Diguanylate cyclase, GGDEF domain JV59_16915 PF13458 Periplasmic binding protein JV59_16930 PF13378 Enolase C-terminal domain-like JV59_16930 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JV59_16940 PF03466 LysR substrate binding domain JV59_16940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_16945 PF00012 Hsp70 protein JV59_16955 PF01557 Fumarylacetoacetate (FAA) hydrolase family JV59_16970 PF12833 Helix-turn-helix domain JV59_16975 PF01810 LysE type translocator JV59_16990 PF02683 Cytochrome C biogenesis protein transmembrane region JV59_16990 PF11412 Disulphide bond corrector protein DsbC JV59_16995 PF00085 Thioredoxin JV59_17020 PF02706 Chain length determinant protein JV59_17020 PF13807 G-rich domain on putative tyrosine kinase JV59_17020 PF13614 AAA domain JV59_17025 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JV59_17025 PF02563 Polysaccharide biosynthesis/export protein JV59_17025 PF10531 SLBB domain JV59_17035 PF02397 Bacterial sugar transferase JV59_17055 PF00924 Mechanosensitive ion channel JV59_17065 PF03109 ABC1 family JV59_17080 PF03707 Bacterial signalling protein N terminal repeat JV59_17080 PF00990 Diguanylate cyclase, GGDEF domain JV59_17080 PF00563 EAL domain JV59_17085 PF03466 LysR substrate binding domain JV59_17085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_17100 PF03707 Bacterial signalling protein N terminal repeat JV59_17100 PF00563 EAL domain JV59_17100 PF00990 Diguanylate cyclase, GGDEF domain JV59_17110 PF03480 Bacterial extracellular solute-binding protein, family 7 JV59_17125 PF01202 Shikimate kinase JV59_17130 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JV59_17130 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JV59_17135 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JV59_17135 PF00356 Bacterial regulatory proteins, lacI family JV59_17150 PF03413 Peptidase propeptide and YPEB domain JV59_17150 PF01447 Thermolysin metallopeptidase, catalytic domain JV59_17150 PF07504 Fungalysin/Thermolysin Propeptide Motif JV59_17150 PF02868 Thermolysin metallopeptidase, alpha-helical domain JV59_17150 PF04151 Bacterial pre-peptidase C-terminal domain JV59_17155 PF01032 FecCD transport family JV59_17160 PF01497 Periplasmic binding protein JV59_17165 PF00005 ABC transporter JV59_17170 PF03824 High-affinity nickel-transport protein JV59_17200 PF01661 Macro domain JV59_17205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JV59_17205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JV59_17210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JV59_17225 PF00155 Aminotransferase class I and II JV59_17225 PF00392 Bacterial regulatory proteins, gntR family JV59_17250 PF00909 Ammonium Transporter Family JV59_17255 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JV59_17255 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JV59_17255 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JV59_17265 PF00704 Glycosyl hydrolases family 18 JV59_17275 PF05025 RbsD / FucU transport protein family JV59_17280 PF00005 ABC transporter JV59_17285 PF02653 Branched-chain amino acid transport system / permease component JV59_17290 PF13407 Periplasmic binding protein domain JV59_17295 PF00294 pfkB family carbohydrate kinase JV59_17300 PF00356 Bacterial regulatory proteins, lacI family JV59_17305 PF11849 Domain of unknown function (DUF3369) JV59_17310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_17310 PF00497 Bacterial extracellular solute-binding proteins, family 3 JV59_17310 PF00512 His Kinase A (phospho-acceptor) domain JV59_17320 PF00271 Helicase conserved C-terminal domain JV59_17320 PF00270 DEAD/DEAH box helicase JV59_17320 PF03880 DbpA RNA binding domain JV59_17325 PF01593 Flavin containing amine oxidoreductase JV59_17330 PF00575 S1 RNA binding domain JV59_17330 PF00773 RNB domain JV59_17330 PF08206 Ribonuclease B OB domain JV59_17340 PF12849 PBP superfamily domain JV59_17355 PF01551 Peptidase family M23 JV59_17355 PF08525 Opacity-associated protein A N-terminal motif JV59_17355 PF01476 LysM domain JV59_17365 PF07690 Major Facilitator Superfamily JV59_17370 PF00005 ABC transporter JV59_17375 PF01032 FecCD transport family JV59_17385 PF02472 Biopolymer transport protein ExbD/TolR JV59_17390 PF01618 MotA/TolQ/ExbB proton channel family JV59_17395 PF03544 Gram-negative bacterial TonB protein C-terminal JV59_17400 PF04055 Radical SAM superfamily JV59_17405 PF06228 Haem utilisation ChuX/HutX JV59_17410 PF01243 Pyridoxamine 5'-phosphate oxidase JV59_17415 PF01923 Cobalamin adenosyltransferase JV59_17420 PF00005 ABC transporter JV59_17420 PF08402 TOBE domain JV59_17425 PF01547 Bacterial extracellular solute-binding protein JV59_17430 PF00528 Binding-protein-dependent transport system inner membrane component JV59_17430 PF14785 Maltose transport system permease protein MalF P2 domain JV59_17435 PF00528 Binding-protein-dependent transport system inner membrane component JV59_17460 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JV59_17460 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JV59_17475 PF00672 HAMP domain JV59_17475 PF01627 Hpt domain JV59_17475 PF00072 Response regulator receiver domain JV59_17475 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JV59_17475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_17475 PF00512 His Kinase A (phospho-acceptor) domain JV59_17480 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JV59_17485 PF03741 Integral membrane protein TerC family JV59_17495 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JV59_17500 PF00529 HlyD membrane-fusion protein of T1SS JV59_17500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JV59_17525 PF00072 Response regulator receiver domain JV59_17525 PF00486 Transcriptional regulatory protein, C terminal JV59_17530 PF00672 HAMP domain JV59_17530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_17530 PF00512 His Kinase A (phospho-acceptor) domain JV59_17550 PF00392 Bacterial regulatory proteins, gntR family JV59_17550 PF00155 Aminotransferase class I and II JV59_17560 PF13520 Amino acid permease JV59_17570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_17570 PF03466 LysR substrate binding domain JV59_17580 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JV59_17585 PF02566 OsmC-like protein JV59_17590 PF14602 Hexapeptide repeat of succinyl-transferase JV59_17590 PF12464 Maltose acetyltransferase JV59_17595 PF00892 EamA-like transporter family JV59_17610 PF13519 von Willebrand factor type A domain JV59_17610 PF07584 Aerotolerance regulator N-terminal JV59_17615 PF00092 von Willebrand factor type A domain JV59_17615 PF07584 Aerotolerance regulator N-terminal JV59_17625 PF01882 Protein of unknown function DUF58 JV59_17630 PF17863 AAA lid domain JV59_17630 PF07726 ATPase family associated with various cellular activities (AAA) JV59_17635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_17635 PF00672 HAMP domain JV59_17635 PF02743 Cache domain JV59_17645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_17645 PF03466 LysR substrate binding domain JV59_17650 PF00248 Aldo/keto reductase family JV59_17660 PF00892 EamA-like transporter family JV59_17665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_17665 PF00512 His Kinase A (phospho-acceptor) domain JV59_17665 PF00672 HAMP domain JV59_17670 PF00072 Response regulator receiver domain JV59_17670 PF00486 Transcriptional regulatory protein, C terminal JV59_17675 PF03150 Di-haem cytochrome c peroxidase JV59_17685 PF00486 Transcriptional regulatory protein, C terminal JV59_17685 PF00072 Response regulator receiver domain JV59_17690 PF00672 HAMP domain JV59_17690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_17690 PF00512 His Kinase A (phospho-acceptor) domain JV59_17695 PF06123 Inner membrane protein CreD JV59_17705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JV59_17710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_17710 PF03466 LysR substrate binding domain JV59_17725 PF00563 EAL domain JV59_17725 PF00990 Diguanylate cyclase, GGDEF domain JV59_17725 PF13426 PAS domain JV59_17730 PF00155 Aminotransferase class I and II JV59_17735 PF00107 Zinc-binding dehydrogenase JV59_17735 PF08240 Alcohol dehydrogenase GroES-like domain JV59_17750 PF00194 Eukaryotic-type carbonic anhydrase JV59_17765 PF01773 Na+ dependent nucleoside transporter N-terminus JV59_17765 PF07662 Na+ dependent nucleoside transporter C-terminus JV59_17765 PF07670 Nucleoside recognition JV59_17790 PF01758 Sodium Bile acid symporter family JV59_17800 PF05193 Peptidase M16 inactive domain JV59_17800 PF00675 Insulinase (Peptidase family M16) JV59_17805 PF00072 Response regulator receiver domain JV59_17805 PF09456 RcsC Alpha-Beta-Loop (ABL) JV59_17805 PF00512 His Kinase A (phospho-acceptor) domain JV59_17805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_17810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_17810 PF00072 Response regulator receiver domain JV59_17810 PF09456 RcsC Alpha-Beta-Loop (ABL) JV59_17810 PF00512 His Kinase A (phospho-acceptor) domain JV59_17815 PF00512 His Kinase A (phospho-acceptor) domain JV59_17815 PF00672 HAMP domain JV59_17815 PF00072 Response regulator receiver domain JV59_17815 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JV59_17815 PF01627 Hpt domain JV59_17815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_17825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_17825 PF03466 LysR substrate binding domain JV59_17835 PF13193 AMP-binding enzyme C-terminal domain JV59_17835 PF00501 AMP-binding enzyme JV59_17840 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JV59_17845 PF01329 Pterin 4 alpha carbinolamine dehydratase JV59_17890 PF07549 SecD/SecF GG Motif JV59_17890 PF02355 Protein export membrane protein JV59_17890 PF13721 SecD export protein N-terminal TM region JV59_17895 PF07549 SecD/SecF GG Motif JV59_17895 PF02355 Protein export membrane protein JV59_17940 PF00465 Iron-containing alcohol dehydrogenase JV59_17950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_17950 PF03466 LysR substrate binding domain JV59_17955 PF13419 Haloacid dehalogenase-like hydrolase JV59_17980 PF13419 Haloacid dehalogenase-like hydrolase JV59_17990 PF00266 Aminotransferase class-V JV59_18005 PF00005 ABC transporter JV59_18010 PF00528 Binding-protein-dependent transport system inner membrane component JV59_18015 PF07702 UTRA domain JV59_18015 PF00392 Bacterial regulatory proteins, gntR family JV59_18030 PF00854 POT family JV59_18035 PF00246 Zinc carboxypeptidase JV59_18035 PF18027 Cytosolic carboxypeptidase N-terminal domain JV59_18040 PF01266 FAD dependent oxidoreductase JV59_18045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_18045 PF03466 LysR substrate binding domain JV59_18050 PF03315 Serine dehydratase beta chain JV59_18050 PF03313 Serine dehydratase alpha chain JV59_18075 PF00990 Diguanylate cyclase, GGDEF domain JV59_18080 PF01584 CheW-like domain JV59_18080 PF00072 Response regulator receiver domain JV59_18110 PF01212 Beta-eliminating lyase JV59_18115 PF00293 NUDIX domain JV59_18120 PF12592 Protein of unknown function (DUF3763) JV59_18120 PF07728 AAA domain (dynein-related subfamily) JV59_18120 PF17868 AAA lid domain JV59_18125 PF05762 VWA domain containing CoxE-like protein JV59_18130 PF07690 Major Facilitator Superfamily JV59_18150 PF01037 Lrp/AsnC ligand binding domain JV59_18155 PF00990 Diguanylate cyclase, GGDEF domain JV59_18155 PF05230 MASE2 domain JV59_18160 PF01047 MarR family JV59_18165 PF02028 BCCT, betaine/carnitine/choline family transporter JV59_18170 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JV59_18170 PF07733 Bacterial DNA polymerase III alpha NTPase domain JV59_18170 PF14579 Helix-hairpin-helix motif JV59_18170 PF00929 Exonuclease JV59_18170 PF02811 PHP domain JV59_18180 PF13411 MerR HTH family regulatory protein JV59_18190 PF00990 Diguanylate cyclase, GGDEF domain JV59_18190 PF00563 EAL domain JV59_18190 PF03707 Bacterial signalling protein N terminal repeat JV59_18195 PF00871 Acetokinase family JV59_18205 PF00158 Sigma-54 interaction domain JV59_18205 PF00072 Response regulator receiver domain JV59_18205 PF02954 Bacterial regulatory protein, Fis family JV59_18220 PF00069 Protein kinase domain JV59_18220 PF03793 PASTA domain JV59_18245 PF02463 RecF/RecN/SMC N terminal domain JV59_18265 PF03466 LysR substrate binding domain JV59_18265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_18270 PF01810 LysE type translocator JV59_18275 PF00551 Formyl transferase JV59_18280 PF00579 tRNA synthetases class I (W and Y) JV59_18295 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JV59_18295 PF18416 N-acetylglucosamine binding protein domain 2 JV59_18325 PF00563 EAL domain JV59_18325 PF00498 FHA domain JV59_18325 PF00990 Diguanylate cyclase, GGDEF domain JV59_18345 PF13460 NAD(P)H-binding JV59_18350 PF03466 LysR substrate binding domain JV59_18350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_18355 PF01235 Sodium:alanine symporter family JV59_18370 PF02678 Pirin JV59_18370 PF17954 Quercetinase C-terminal cupin domain JV59_18375 PF07681 DoxX JV59_18380 PF01810 LysE type translocator JV59_18400 PF00682 HMGL-like JV59_18405 PF00378 Enoyl-CoA hydratase/isomerase JV59_18410 PF01039 Carboxyl transferase domain JV59_18415 PF02770 Acyl-CoA dehydrogenase, middle domain JV59_18415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JV59_18415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JV59_18420 PF00376 MerR family regulatory protein JV59_18420 PF09278 MerR, DNA binding JV59_18425 PF00108 Thiolase, N-terminal domain JV59_18425 PF02803 Thiolase, C-terminal domain JV59_18430 PF00171 Aldehyde dehydrogenase family JV59_18435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JV59_18435 PF02770 Acyl-CoA dehydrogenase, middle domain JV59_18435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JV59_18440 PF00378 Enoyl-CoA hydratase/isomerase JV59_18445 PF00378 Enoyl-CoA hydratase/isomerase JV59_18450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JV59_18450 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JV59_18460 PF00127 Copper binding proteins, plastocyanin/azurin family JV59_18470 PF01012 Electron transfer flavoprotein domain JV59_18475 PF01012 Electron transfer flavoprotein domain JV59_18475 PF00766 Electron transfer flavoprotein FAD-binding domain JV59_18480 PF00990 Diguanylate cyclase, GGDEF domain JV59_18485 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JV59_18485 PF00364 Biotin-requiring enzyme JV59_18485 PF02817 e3 binding domain JV59_18490 PF02779 Transketolase, pyrimidine binding domain JV59_18490 PF02780 Transketolase, C-terminal domain JV59_18495 PF00676 Dehydrogenase E1 component JV59_18500 PF00672 HAMP domain JV59_18500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_18505 PF00990 Diguanylate cyclase, GGDEF domain JV59_18505 PF13185 GAF domain JV59_18560 PF01568 Molydopterin dinucleotide binding domain JV59_18560 PF00384 Molybdopterin oxidoreductase JV59_18560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JV59_18565 PF10414 Sirohaem synthase dimerisation region JV59_18565 PF14824 Sirohaem biosynthesis protein central JV59_18565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JV59_18570 PF02885 Glycosyl transferase family, helical bundle domain JV59_18570 PF00591 Glycosyl transferase family, a/b domain JV59_18575 PF03861 ANTAR domain JV59_18575 PF00072 Response regulator receiver domain JV59_18580 PF00005 ABC transporter JV59_18585 PF00528 Binding-protein-dependent transport system inner membrane component JV59_18590 PF00005 ABC transporter JV59_18595 PF13806 Rieske-like [2Fe-2S] domain JV59_18595 PF07992 Pyridine nucleotide-disulphide oxidoreductase JV59_18595 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JV59_18595 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JV59_18595 PF04324 BFD-like [2Fe-2S] binding domain JV59_18595 PF18267 Rubredoxin NAD+ reductase C-terminal domain JV59_18600 PF00355 Rieske [2Fe-2S] domain JV59_18615 PF11756 Nitrous oxide-stimulated promoter JV59_18620 PF07690 Major Facilitator Superfamily JV59_18625 PF00085 Thioredoxin JV59_18630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JV59_18630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JV59_18635 PF12320 Type 5 capsule protein repressor C-terminal domain JV59_18635 PF00149 Calcineurin-like phosphoesterase JV59_18640 PF13476 AAA domain JV59_18645 PF00072 Response regulator receiver domain JV59_18645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_18650 PF00155 Aminotransferase class I and II JV59_18660 PF00654 Voltage gated chloride channel JV59_18665 PF07683 Cobalamin synthesis protein cobW C-terminal domain JV59_18665 PF02492 CobW/HypB/UreG, nucleotide-binding domain JV59_18670 PF01926 50S ribosome-binding GTPase JV59_18680 PF04229 GrpB protein JV59_18690 PF03707 Bacterial signalling protein N terminal repeat JV59_18690 PF00990 Diguanylate cyclase, GGDEF domain JV59_18690 PF00563 EAL domain JV59_18700 PF00990 Diguanylate cyclase, GGDEF domain JV59_18700 PF07694 5TMR of 5TMR-LYT JV59_18705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_18705 PF00672 HAMP domain JV59_18715 PF01037 Lrp/AsnC ligand binding domain JV59_18720 PF02779 Transketolase, pyrimidine binding domain JV59_18720 PF02780 Transketolase, C-terminal domain JV59_18720 PF00456 Transketolase, thiamine diphosphate binding domain JV59_18725 PF00923 Transaldolase/Fructose-6-phosphate aldolase JV59_18735 PF03466 LysR substrate binding domain JV59_18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_18750 PF00581 Rhodanese-like domain JV59_18760 PF00899 ThiF family JV59_18765 PF00994 Probable molybdopterin binding domain JV59_18765 PF03453 MoeA N-terminal region (domain I and II) JV59_18765 PF03454 MoeA C-terminal region (domain IV) JV59_18770 PF01227 GTP cyclohydrolase I JV59_18775 PF00271 Helicase conserved C-terminal domain JV59_18775 PF00270 DEAD/DEAH box helicase JV59_18775 PF03880 DbpA RNA binding domain JV59_18785 PF01641 SelR domain JV59_18785 PF01625 Peptide methionine sulfoxide reductase JV59_18790 PF03222 Tryptophan/tyrosine permease family JV59_18795 PF04336 Acyl carrier protein phosphodiesterase JV59_18800 PF00271 Helicase conserved C-terminal domain JV59_18800 PF00270 DEAD/DEAH box helicase JV59_18830 PF00583 Acetyltransferase (GNAT) family JV59_18830 PF00814 Glycoprotease family JV59_18835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JV59_18840 PF00873 AcrB/AcrD/AcrF family JV59_18845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JV59_18855 PF00291 Pyridoxal-phosphate dependent enzyme JV59_18860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_18860 PF03466 LysR substrate binding domain JV59_18865 PF12729 Four helix bundle sensory module for signal transduction JV59_18865 PF00672 HAMP domain JV59_18865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_18870 PF13419 Haloacid dehalogenase-like hydrolase JV59_18875 PF00294 pfkB family carbohydrate kinase JV59_18890 PF13419 Haloacid dehalogenase-like hydrolase JV59_18900 PF01081 KDPG and KHG aldolase JV59_18905 PF00294 pfkB family carbohydrate kinase JV59_18910 PF02378 Phosphotransferase system, EIIC JV59_18910 PF00367 phosphotransferase system, EIIB JV59_18915 PF13378 Enolase C-terminal domain-like JV59_18915 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JV59_18920 PF07702 UTRA domain JV59_18920 PF00392 Bacterial regulatory proteins, gntR family JV59_18925 PF02142 MGS-like domain JV59_18930 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JV59_18935 PF00672 HAMP domain JV59_18935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_18935 PF00512 His Kinase A (phospho-acceptor) domain JV59_18935 PF01627 Hpt domain JV59_18935 PF00072 Response regulator receiver domain JV59_18950 PF00465 Iron-containing alcohol dehydrogenase JV59_18955 PF12833 Helix-turn-helix domain JV59_18955 PF06719 AraC-type transcriptional regulator N-terminus JV59_18960 PF00483 Nucleotidyl transferase JV59_18970 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JV59_18970 PF02378 Phosphotransferase system, EIIC JV59_18975 PF00294 pfkB family carbohydrate kinase JV59_18980 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JV59_18980 PF00381 PTS HPr component phosphorylation site JV59_18990 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JV59_18990 PF00356 Bacterial regulatory proteins, lacI family JV59_19005 PF07685 CobB/CobQ-like glutamine amidotransferase domain JV59_19005 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JV59_19015 PF00528 Binding-protein-dependent transport system inner membrane component JV59_19020 PF00005 ABC transporter JV59_19020 PF03459 TOBE domain JV59_19030 PF00360 Phytochrome region JV59_19030 PF00563 EAL domain JV59_19030 PF00990 Diguanylate cyclase, GGDEF domain JV59_19030 PF01590 GAF domain JV59_19035 PF07694 5TMR of 5TMR-LYT JV59_19035 PF00990 Diguanylate cyclase, GGDEF domain JV59_19050 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JV59_19050 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JV59_19050 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JV59_19055 PF02233 NAD(P) transhydrogenase beta subunit JV59_19065 PF00072 Response regulator receiver domain JV59_19065 PF00486 Transcriptional regulatory protein, C terminal JV59_19090 PF01253 Translation initiation factor SUI1 JV59_19105 PF01820 D-ala D-ala ligase N-terminus JV59_19105 PF07478 D-ala D-ala ligase C-terminus JV59_19110 PF05036 Sporulation related domain JV59_19115 PF00583 Acetyltransferase (GNAT) family JV59_19115 PF13380 CoA binding domain JV59_19115 PF13607 Succinyl-CoA ligase like flavodoxin domain JV59_19120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_19120 PF03466 LysR substrate binding domain JV59_19125 PF07715 TonB-dependent Receptor Plug Domain JV59_19125 PF00593 TonB dependent receptor JV59_19135 PF12793 Sugar transport-related sRNA regulator N-term JV59_19135 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JV59_19145 PF03061 Thioesterase superfamily JV59_19150 PF01435 Peptidase family M48 JV59_19165 PF00561 alpha/beta hydrolase fold JV59_19175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_19180 PF00072 Response regulator receiver domain JV59_19180 PF00512 His Kinase A (phospho-acceptor) domain JV59_19180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_19180 PF09308 LuxQ, periplasmic JV59_19185 PF00072 Response regulator receiver domain JV59_19185 PF00486 Transcriptional regulatory protein, C terminal JV59_19200 PF01817 Chorismate mutase type II JV59_19205 PF00990 Diguanylate cyclase, GGDEF domain JV59_19205 PF03707 Bacterial signalling protein N terminal repeat JV59_19205 PF00563 EAL domain JV59_19225 PF03741 Integral membrane protein TerC family JV59_19230 PF00149 Calcineurin-like phosphoesterase JV59_19230 PF02872 5'-nucleotidase, C-terminal domain JV59_19235 PF11398 Protein of unknown function (DUF2813) JV59_19240 PF06496 Protein of unknown function (DUF1097) JV59_19245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_19245 PF03466 LysR substrate binding domain JV59_19250 PF01226 Formate/nitrite transporter JV59_19255 PF04264 YceI-like domain JV59_19260 PF01292 Prokaryotic cytochrome b561 JV59_19280 PF03606 C4-dicarboxylate anaerobic carrier JV59_19285 PF00072 Response regulator receiver domain JV59_19285 PF00196 Bacterial regulatory proteins, luxR family JV59_19290 PF07730 Histidine kinase JV59_19290 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JV59_19290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_19290 PF00672 HAMP domain JV59_19295 PF13187 4Fe-4S dicluster domain JV59_19295 PF12838 4Fe-4S dicluster domain JV59_19305 PF00384 Molybdopterin oxidoreductase JV59_19305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JV59_19305 PF01568 Molydopterin dinucleotide binding domain JV59_19310 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) JV59_19315 PF03264 NapC/NirT cytochrome c family, N-terminal region JV59_19320 PF16363 GDP-mannose 4,6 dehydratase JV59_19325 PF03746 LamB/YcsF family JV59_19335 PF02626 Carboxyltransferase domain, subdomain A and B JV59_19340 PF01134 Glucose inhibited division protein A JV59_19350 PF00005 ABC transporter JV59_19355 PF13472 GDSL-like Lipase/Acylhydrolase family JV59_19360 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JV59_19360 PF12241 Trans-2-enoyl-CoA reductase catalytic region JV59_19360 PF07055 Enoyl reductase FAD binding domain JV59_19365 PF03707 Bacterial signalling protein N terminal repeat JV59_19365 PF00563 EAL domain JV59_19365 PF13188 PAS domain JV59_19365 PF00990 Diguanylate cyclase, GGDEF domain JV59_19375 PF00684 DnaJ central domain JV59_19375 PF01556 DnaJ C terminal domain JV59_19375 PF00226 DnaJ domain JV59_19395 PF13361 UvrD-like helicase C-terminal domain JV59_19395 PF00580 UvrD/REP helicase N-terminal domain JV59_19395 PF12462 DNA helicase IV / RNA helicase N terminal JV59_19400 PF12805 FUSC-like inner membrane protein yccS JV59_19415 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JV59_19415 PF01266 FAD dependent oxidoreductase JV59_19425 PF00072 Response regulator receiver domain JV59_19425 PF09308 LuxQ, periplasmic JV59_19425 PF00512 His Kinase A (phospho-acceptor) domain JV59_19425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_19430 PF13407 Periplasmic binding protein domain JV59_19440 PF01541 GIY-YIG catalytic domain JV59_19465 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JV59_19465 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JV59_19470 PF00230 Major intrinsic protein JV59_19475 PF01266 FAD dependent oxidoreductase JV59_19475 PF04324 BFD-like [2Fe-2S] binding domain JV59_19480 PF00890 FAD binding domain JV59_19485 PF13183 4Fe-4S dicluster domain JV59_19485 PF02754 Cysteine-rich domain JV59_19505 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JV59_19505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JV59_19515 PF08443 RimK-like ATP-grasp domain JV59_19515 PF18030 RimK PreATP-grasp domain JV59_19520 PF00155 Aminotransferase class I and II JV59_19530 PF03477 ATP cone domain JV59_19530 PF13597 Anaerobic ribonucleoside-triphosphate reductase JV59_19545 PF04143 Sulphur transport JV59_19555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JV59_19555 PF07992 Pyridine nucleotide-disulphide oxidoreductase JV59_19575 PF00801 PKD domain JV59_19575 PF05547 Immune inhibitor A peptidase M6 JV59_19585 PF07690 Major Facilitator Superfamily JV59_19590 PF01177 Asp/Glu/Hydantoin racemase JV59_19595 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JV59_19595 PF00561 alpha/beta hydrolase fold JV59_19605 PF00108 Thiolase, N-terminal domain JV59_19605 PF02803 Thiolase, C-terminal domain JV59_19610 PF00106 short chain dehydrogenase JV59_19615 PF00873 AcrB/AcrD/AcrF family JV59_19620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JV59_19625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JV59_19630 PF08361 MAATS-type transcriptional repressor, C-terminal region JV59_19630 PF00440 Bacterial regulatory proteins, tetR family JV59_19635 PF00356 Bacterial regulatory proteins, lacI family JV59_19645 PF02837 Glycosyl hydrolases family 2, sugar binding domain JV59_19645 PF16353 Domain of unknown function(DUF4981) JV59_19645 PF00703 Glycosyl hydrolases family 2 JV59_19645 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JV59_19645 PF02929 Beta galactosidase small chain JV59_19720 PF00069 Protein kinase domain JV59_19720 PF03793 PASTA domain JV59_19745 PF04717 Type VI secretion system, phage-baseplate injector JV59_19750 PF05638 Type VI secretion system effector, Hcp JV59_19755 PF10431 C-terminal, D2-small domain, of ClpB protein JV59_19755 PF00004 ATPase family associated with various cellular activities (AAA) JV59_19755 PF17871 AAA lid domain JV59_19755 PF07724 AAA domain (Cdc48 subfamily) JV59_19760 PF01590 GAF domain JV59_19760 PF00158 Sigma-54 interaction domain JV59_19760 PF02954 Bacterial regulatory protein, Fis family JV59_19780 PF01476 LysM domain JV59_19780 PF01551 Peptidase family M23 JV59_19780 PF08525 Opacity-associated protein A N-terminal motif JV59_19790 PF00990 Diguanylate cyclase, GGDEF domain JV59_19795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_19795 PF00672 HAMP domain JV59_19795 PF17200 Single Cache domain 2 JV59_19805 PF07690 Major Facilitator Superfamily JV59_19810 PF18081 Fanconi anemia-associated nuclease SAP domain JV59_19810 PF08774 VRR-NUC domain JV59_19815 PF00486 Transcriptional regulatory protein, C terminal JV59_19815 PF00072 Response regulator receiver domain JV59_19820 PF16750 Sensor domain of 2-component histidine kinase JV59_19820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_19820 PF00672 HAMP domain JV59_19820 PF00512 His Kinase A (phospho-acceptor) domain JV59_19825 PF00593 TonB dependent receptor JV59_19825 PF07715 TonB-dependent Receptor Plug Domain JV59_19835 PF00909 Ammonium Transporter Family JV59_19835 PF00672 HAMP domain JV59_19850 PF01268 Formate--tetrahydrofolate ligase JV59_19855 PF00005 ABC transporter JV59_19860 PF01032 FecCD transport family JV59_19865 PF01032 FecCD transport family JV59_19885 PF00196 Bacterial regulatory proteins, luxR family JV59_19885 PF00072 Response regulator receiver domain JV59_19900 PF00990 Diguanylate cyclase, GGDEF domain JV59_19900 PF00563 EAL domain JV59_19900 PF03707 Bacterial signalling protein N terminal repeat JV59_19905 PF00990 Diguanylate cyclase, GGDEF domain JV59_19905 PF00072 Response regulator receiver domain JV59_19915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_19915 PF00005 ABC transporter JV59_19920 PF12911 N-terminal TM domain of oligopeptide transport permease C JV59_19920 PF00528 Binding-protein-dependent transport system inner membrane component JV59_19925 PF00528 Binding-protein-dependent transport system inner membrane component JV59_19930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JV59_19945 PF00672 HAMP domain JV59_19945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_19945 PF17200 Single Cache domain 2 JV59_19950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JV59_19950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JV59_19955 PF05362 Lon protease (S16) C-terminal proteolytic domain JV59_19955 PF13654 AAA domain JV59_19965 PF00005 ABC transporter JV59_19965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_19970 PF03466 LysR substrate binding domain JV59_19970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_19975 PF02652 L-lactate permease JV59_19985 PF02567 Phenazine biosynthesis-like protein JV59_20000 PF00005 ABC transporter JV59_20000 PF00571 CBS domain JV59_20005 PF00528 Binding-protein-dependent transport system inner membrane component JV59_20010 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JV59_20015 PF05199 GMC oxidoreductase JV59_20015 PF00732 GMC oxidoreductase JV59_20025 PF13977 BetI-type transcriptional repressor, C-terminal JV59_20025 PF00440 Bacterial regulatory proteins, tetR family JV59_20045 PF04172 LrgB-like family JV59_20055 PF00478 IMP dehydrogenase / GMP reductase domain JV59_20060 PF03853 YjeF-related protein N-terminus JV59_20060 PF01256 Carbohydrate kinase JV59_20075 PF00072 Response regulator receiver domain JV59_20080 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JV59_20080 PF00512 His Kinase A (phospho-acceptor) domain JV59_20080 PF01627 Hpt domain JV59_20080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_20080 PF00672 HAMP domain JV59_20080 PF00072 Response regulator receiver domain JV59_20090 PF13581 Histidine kinase-like ATPase domain JV59_20100 PF01740 STAS domain JV59_20100 PF08678 Rsbr N terminal JV59_20105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_20105 PF08447 PAS fold JV59_20135 PF00672 HAMP domain JV59_20135 PF02743 Cache domain JV59_20135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_20140 PF00128 Alpha amylase, catalytic domain JV59_20150 PF05661 Protein of unknown function (DUF808) JV59_20170 PF17151 Periplasmic sensor domain JV59_20170 PF00990 Diguanylate cyclase, GGDEF domain JV59_20175 PF08220 DeoR-like helix-turn-helix domain JV59_20175 PF00455 DeoR C terminal sensor domain JV59_20180 PF03472 Autoinducer binding domain JV59_20180 PF00196 Bacterial regulatory proteins, luxR family JV59_20185 PF03473 MOSC domain JV59_20185 PF00111 2Fe-2S iron-sulfur cluster binding domain JV59_20185 PF03476 MOSC N-terminal beta barrel domain JV59_20185 PF03476 MOSC N-terminal beta barrel domain JV59_20185 PF00111 2Fe-2S iron-sulfur cluster binding domain JV59_20185 PF03473 MOSC domain JV59_20205 PF07690 Major Facilitator Superfamily JV59_20210 PF00196 Bacterial regulatory proteins, luxR family JV59_20210 PF00072 Response regulator receiver domain JV59_20215 PF07730 Histidine kinase JV59_20215 PF05231 MASE1 JV59_20215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_20220 PF07690 Major Facilitator Superfamily JV59_20240 PF01966 HD domain JV59_20245 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JV59_20245 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JV59_20250 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JV59_20255 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JV59_20255 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JV59_20275 PF01590 GAF domain JV59_20275 PF00158 Sigma-54 interaction domain JV59_20275 PF02954 Bacterial regulatory protein, Fis family JV59_20280 PF00171 Aldehyde dehydrogenase family JV59_20290 PF00072 Response regulator receiver domain JV59_20310 PF01266 FAD dependent oxidoreductase JV59_20320 PF01632 Ribosomal protein L35 JV59_20325 PF05198 Translation initiation factor IF-3, N-terminal domain JV59_20325 PF00707 Translation initiation factor IF-3, C-terminal domain JV59_20330 PF02824 TGS domain JV59_20330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JV59_20330 PF03129 Anticodon binding domain JV59_20330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JV59_20335 PF17200 Single Cache domain 2 JV59_20335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_20335 PF00672 HAMP domain JV59_20340 PF01037 Lrp/AsnC ligand binding domain JV59_20345 PF01810 LysE type translocator JV59_20360 PF07690 Major Facilitator Superfamily JV59_20365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_20365 PF03466 LysR substrate binding domain JV59_20375 PF08240 Alcohol dehydrogenase GroES-like domain JV59_20375 PF00107 Zinc-binding dehydrogenase JV59_20380 PF00756 Putative esterase JV59_20395 PF00849 RNA pseudouridylate synthase JV59_20425 PF01042 Endoribonuclease L-PSP JV59_20435 PF03060 Nitronate monooxygenase JV59_20460 PF14602 Hexapeptide repeat of succinyl-transferase JV59_20460 PF12464 Maltose acetyltransferase JV59_20465 PF00128 Alpha amylase, catalytic domain JV59_20470 PF00251 Glycosyl hydrolases family 32 N-terminal domain JV59_20470 PF08244 Glycosyl hydrolases family 32 C terminal JV59_20480 PF08402 TOBE domain JV59_20480 PF00005 ABC transporter JV59_20485 PF13419 Haloacid dehalogenase-like hydrolase JV59_20490 PF03633 Glycosyl hydrolase family 65, C-terminal domain JV59_20490 PF03636 Glycosyl hydrolase family 65, N-terminal domain JV59_20490 PF03632 Glycosyl hydrolase family 65 central catalytic domain JV59_20495 PF00528 Binding-protein-dependent transport system inner membrane component JV59_20510 PF00356 Bacterial regulatory proteins, lacI family JV59_20515 PF00005 ABC transporter JV59_20525 PF00528 Binding-protein-dependent transport system inner membrane component JV59_20530 PF12849 PBP superfamily domain JV59_20535 PF00512 His Kinase A (phospho-acceptor) domain JV59_20535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_20540 PF00072 Response regulator receiver domain JV59_20555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_20555 PF03466 LysR substrate binding domain JV59_20565 PF07969 Amidohydrolase family JV59_20570 PF00563 EAL domain JV59_20570 PF08447 PAS fold JV59_20570 PF13426 PAS domain JV59_20570 PF05231 MASE1 JV59_20570 PF00990 Diguanylate cyclase, GGDEF domain JV59_20570 PF08448 PAS fold JV59_20580 PF00270 DEAD/DEAH box helicase JV59_20580 PF00271 Helicase conserved C-terminal domain JV59_20600 PF00990 Diguanylate cyclase, GGDEF domain JV59_20600 PF07694 5TMR of 5TMR-LYT JV59_20605 PF00440 Bacterial regulatory proteins, tetR family JV59_20605 PF16925 Tetracyclin repressor-like, C-terminal domain JV59_20610 PF16884 N-terminal domain of oxidoreductase JV59_20610 PF00107 Zinc-binding dehydrogenase JV59_20615 PF00043 Glutathione S-transferase, C-terminal domain JV59_20615 PF02798 Glutathione S-transferase, N-terminal domain JV59_20620 PF00141 Peroxidase JV59_20625 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JV59_20625 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JV59_20645 PF00128 Alpha amylase, catalytic domain JV59_20655 PF13419 Haloacid dehalogenase-like hydrolase JV59_20660 PF02798 Glutathione S-transferase, N-terminal domain JV59_20665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JV59_20695 PF10415 Fumarase C C-terminus JV59_20695 PF00206 Lyase JV59_20715 PF00005 ABC transporter JV59_20735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_20735 PF01627 Hpt domain JV59_20735 PF00672 HAMP domain JV59_20735 PF00072 Response regulator receiver domain JV59_20735 PF17149 Periplasmic sensor domain found in signal transduction proteins JV59_20735 PF00512 His Kinase A (phospho-acceptor) domain JV59_20750 PF13673 Acetyltransferase (GNAT) domain JV59_20755 PF00512 His Kinase A (phospho-acceptor) domain JV59_20755 PF13426 PAS domain JV59_20755 PF00672 HAMP domain JV59_20755 PF14827 Double sensory domain of two-component sensor kinase JV59_20755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_20760 PF00486 Transcriptional regulatory protein, C terminal JV59_20760 PF00072 Response regulator receiver domain JV59_20780 PF13977 BetI-type transcriptional repressor, C-terminal JV59_20780 PF00440 Bacterial regulatory proteins, tetR family JV59_20790 PF00873 AcrB/AcrD/AcrF family JV59_20795 PF05175 Methyltransferase small domain JV59_20795 PF08468 Methyltransferase small domain N-terminal JV59_20800 PF00873 AcrB/AcrD/AcrF family JV59_20815 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JV59_20820 PF00563 EAL domain JV59_20820 PF00990 Diguanylate cyclase, GGDEF domain JV59_20820 PF03707 Bacterial signalling protein N terminal repeat JV59_20835 PF03116 NQR2, RnfD, RnfE family JV59_20840 PF01654 Cytochrome bd terminal oxidase subunit I JV59_20845 PF02322 Cytochrome bd terminal oxidase subunit II JV59_20850 PF02657 Fe-S metabolism associated domain JV59_20855 PF00266 Aminotransferase class-V JV59_20860 PF01458 Uncharacterized protein family (UPF0051) JV59_20865 PF00005 ABC transporter JV59_20870 PF01458 Uncharacterized protein family (UPF0051) JV59_20875 PF01521 Iron-sulphur cluster biosynthesis JV59_20885 PF07972 NrdI Flavodoxin like JV59_20890 PF00317 Ribonucleotide reductase, all-alpha domain JV59_20890 PF02867 Ribonucleotide reductase, barrel domain JV59_20890 PF08343 Ribonucleotide reductase N-terminal JV59_20900 PF13599 Pentapeptide repeats (9 copies) JV59_20905 PF01641 SelR domain JV59_20905 PF01625 Peptide methionine sulfoxide reductase JV59_20910 PF00672 HAMP domain JV59_20910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_20925 PF01037 Lrp/AsnC ligand binding domain JV59_20935 PF00155 Aminotransferase class I and II JV59_20935 PF00392 Bacterial regulatory proteins, gntR family JV59_20945 PF01810 LysE type translocator JV59_20955 PF00155 Aminotransferase class I and II JV59_20960 PF01497 Periplasmic binding protein JV59_20960 PF12833 Helix-turn-helix domain JV59_20965 PF00797 N-acetyltransferase JV59_20970 PF14489 QueF-like protein JV59_20970 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JV59_20985 PF18494 Pullulanase Ins domain JV59_20985 PF17967 Pullulanase N2 domain JV59_20985 PF03714 Bacterial pullanase-associated domain JV59_20985 PF11852 Domain of unknown function (DUF3372) JV59_20985 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JV59_20995 PF00892 EamA-like transporter family JV59_21015 PF03441 FAD binding domain of DNA photolyase JV59_21015 PF00875 DNA photolyase JV59_21045 PF00376 MerR family regulatory protein JV59_21045 PF09278 MerR, DNA binding JV59_21055 PF00672 HAMP domain JV59_21055 PF12729 Four helix bundle sensory module for signal transduction JV59_21055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_21065 PF13411 MerR HTH family regulatory protein JV59_21080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_21080 PF03466 LysR substrate binding domain JV59_21085 PF02743 Cache domain JV59_21085 PF00672 HAMP domain JV59_21085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_21095 PF17200 Single Cache domain 2 JV59_21095 PF00672 HAMP domain JV59_21095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_21105 PF02264 LamB porin JV59_21110 PF00128 Alpha amylase, catalytic domain JV59_21110 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JV59_21120 PF01571 Aminomethyltransferase folate-binding domain JV59_21120 PF08669 Glycine cleavage T-protein C-terminal barrel domain JV59_21135 PF00464 Serine hydroxymethyltransferase JV59_21145 PF02347 Glycine cleavage system P-protein JV59_21155 PF08240 Alcohol dehydrogenase GroES-like domain JV59_21155 PF00107 Zinc-binding dehydrogenase JV59_21160 PF03466 LysR substrate binding domain JV59_21160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_21170 PF00664 ABC transporter transmembrane region JV59_21170 PF00005 ABC transporter JV59_21175 PF00582 Universal stress protein family JV59_21185 PF00361 Proton-conducting membrane transporter JV59_21185 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JV59_21185 PF13244 Domain of unknown function (DUF4040) JV59_21185 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JV59_21190 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JV59_21205 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JV59_21210 PF03334 Na+/H+ antiporter subunit JV59_21215 PF00512 His Kinase A (phospho-acceptor) domain JV59_21215 PF00497 Bacterial extracellular solute-binding proteins, family 3 JV59_21215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_21245 PF01804 Penicillin amidase JV59_21250 PF01804 Penicillin amidase JV59_21255 PF00005 ABC transporter JV59_21255 PF16326 ABC transporter C-terminal domain JV59_21255 PF12848 ABC transporter JV59_21260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JV59_21260 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JV59_21265 PF01810 LysE type translocator JV59_21275 PF05995 Cysteine dioxygenase type I JV59_21280 PF00106 short chain dehydrogenase JV59_21305 PF03922 OmpW family JV59_21310 PF01476 LysM domain JV59_21310 PF01551 Peptidase family M23 JV59_21310 PF08525 Opacity-associated protein A N-terminal motif JV59_21335 PF00795 Carbon-nitrogen hydrolase JV59_21340 PF01266 FAD dependent oxidoreductase JV59_21345 PF04324 BFD-like [2Fe-2S] binding domain JV59_21345 PF07992 Pyridine nucleotide-disulphide oxidoreductase JV59_21355 PF00072 Response regulator receiver domain JV59_21370 PF04151 Bacterial pre-peptidase C-terminal domain JV59_21370 PF04389 Peptidase family M28 JV59_21375 PF02868 Thermolysin metallopeptidase, alpha-helical domain JV59_21375 PF04151 Bacterial pre-peptidase C-terminal domain JV59_21375 PF01447 Thermolysin metallopeptidase, catalytic domain JV59_21375 PF03413 Peptidase propeptide and YPEB domain JV59_21375 PF07504 Fungalysin/Thermolysin Propeptide Motif JV59_21385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JV59_21390 PF00753 Metallo-beta-lactamase superfamily JV59_21395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_21395 PF03466 LysR substrate binding domain JV59_21405 PF00497 Bacterial extracellular solute-binding proteins, family 3 JV59_21415 PF03733 Inner membrane component domain JV59_21420 PF03992 Antibiotic biosynthesis monooxygenase JV59_21430 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JV59_21435 PF00875 DNA photolyase JV59_21435 PF03441 FAD binding domain of DNA photolyase JV59_21455 PF02311 AraC-like ligand binding domain JV59_21455 PF12833 Helix-turn-helix domain JV59_21460 PF01590 GAF domain JV59_21460 PF00158 Sigma-54 interaction domain JV59_21480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_21480 PF03466 LysR substrate binding domain JV59_21490 PF03063 Prismane/CO dehydrogenase family JV59_21495 PF00111 2Fe-2S iron-sulfur cluster binding domain JV59_21495 PF00970 Oxidoreductase FAD-binding domain JV59_21495 PF00175 Oxidoreductase NAD-binding domain JV59_21520 PF00873 AcrB/AcrD/AcrF family JV59_21540 PF04116 Fatty acid hydroxylase superfamily JV59_21545 PF00072 Response regulator receiver domain JV59_21545 PF00486 Transcriptional regulatory protein, C terminal JV59_21550 PF00512 His Kinase A (phospho-acceptor) domain JV59_21550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_21550 PF00672 HAMP domain JV59_21560 PF03606 C4-dicarboxylate anaerobic carrier JV59_21565 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JV59_21570 PF01047 MarR family JV59_21595 PF01037 Lrp/AsnC ligand binding domain JV59_21600 PF03466 LysR substrate binding domain JV59_21600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_21610 PF11953 Domain of unknown function (DUF3470) JV59_21610 PF00037 4Fe-4S binding domain JV59_21615 PF08032 RNA 2'-O ribose methyltransferase substrate binding JV59_21615 PF00588 SpoU rRNA Methylase family JV59_21640 PF07238 PilZ domain JV59_21640 PF12945 Flagellar protein YcgR JV59_21670 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JV59_21675 PF07155 ECF-type riboflavin transporter, S component JV59_21680 PF12558 ATP-binding cassette cobalt transporter JV59_21680 PF00005 ABC transporter JV59_21700 PF03193 RsgA GTPase JV59_21705 PF00375 Sodium:dicarboxylate symporter family JV59_21715 PF00563 EAL domain JV59_21715 PF00990 Diguanylate cyclase, GGDEF domain JV59_21715 PF03707 Bacterial signalling protein N terminal repeat JV59_21720 PF00005 ABC transporter JV59_21725 PF00528 Binding-protein-dependent transport system inner membrane component JV59_21730 PF00528 Binding-protein-dependent transport system inner membrane component JV59_21735 PF12849 PBP superfamily domain JV59_21740 PF17200 Single Cache domain 2 JV59_21740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_21740 PF00672 HAMP domain JV59_21745 PF00106 short chain dehydrogenase JV59_21750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_21750 PF03466 LysR substrate binding domain JV59_21755 PF00171 Aldehyde dehydrogenase family JV59_21760 PF11412 Disulphide bond corrector protein DsbC JV59_21760 PF02683 Cytochrome C biogenesis protein transmembrane region JV59_21765 PF02424 ApbE family JV59_21815 PF00437 Type II/IV secretion system protein JV59_21830 PF04972 BON domain JV59_21830 PF13629 Pilus formation protein N terminal region JV59_21830 PF00263 Bacterial type II and III secretion system protein JV59_21855 PF03466 LysR substrate binding domain JV59_21855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_21865 PF01554 MatE JV59_21875 PF01914 MarC family integral membrane protein JV59_21880 PF00881 Nitroreductase family JV59_21885 PF12793 Sugar transport-related sRNA regulator N-term JV59_21885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JV59_21895 PF00528 Binding-protein-dependent transport system inner membrane component JV59_21900 PF00571 CBS domain JV59_21900 PF00005 ABC transporter JV59_21910 PF07859 alpha/beta hydrolase fold JV59_21935 PF08241 Methyltransferase domain JV59_21940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JV59_21945 PF02540 NAD synthase JV59_21945 PF00795 Carbon-nitrogen hydrolase JV59_21955 PF02028 BCCT, betaine/carnitine/choline family transporter JV59_21960 PF00593 TonB dependent receptor JV59_21960 PF07715 TonB-dependent Receptor Plug Domain JV59_21965 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) JV59_21970 PF06276 Ferric iron reductase FhuF-like transporter JV59_21970 PF04183 IucA / IucC family JV59_21980 PF04183 IucA / IucC family JV59_21980 PF06276 Ferric iron reductase FhuF-like transporter JV59_21985 PF01032 FecCD transport family JV59_21990 PF01497 Periplasmic binding protein JV59_21995 PF00005 ABC transporter JV59_22000 PF07690 Major Facilitator Superfamily JV59_22010 PF14245 Type IV pilin PilA JV59_22010 PF07963 Prokaryotic N-terminal methylation motif JV59_22015 PF02378 Phosphotransferase system, EIIC JV59_22015 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JV59_22015 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JV59_22020 PF00128 Alpha amylase, catalytic domain JV59_22025 PF09261 Alpha mannosidase middle domain JV59_22025 PF01074 Glycosyl hydrolases family 38 N-terminal domain JV59_22025 PF07748 Glycosyl hydrolases family 38 C-terminal domain JV59_22030 PF02378 Phosphotransferase system, EIIC JV59_22035 PF01418 Helix-turn-helix domain, rpiR family JV59_22035 PF01380 SIS domain JV59_22045 PF00881 Nitroreductase family JV59_22055 PF01614 Bacterial transcriptional regulator JV59_22055 PF09339 IclR helix-turn-helix domain JV59_22060 PF00106 short chain dehydrogenase JV59_22090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_22090 PF03466 LysR substrate binding domain JV59_22120 PF01638 HxlR-like helix-turn-helix JV59_22145 PF02311 AraC-like ligand binding domain JV59_22145 PF12833 Helix-turn-helix domain JV59_22150 PF03466 LysR substrate binding domain JV59_22150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_22160 PF01638 HxlR-like helix-turn-helix JV59_22170 PF00793 DAHP synthetase I family JV59_22180 PF12833 Helix-turn-helix domain JV59_22180 PF02311 AraC-like ligand binding domain JV59_22185 PF07715 TonB-dependent Receptor Plug Domain JV59_22185 PF00593 TonB dependent receptor JV59_22190 PF07690 Major Facilitator Superfamily JV59_22215 PF00975 Thioesterase domain JV59_22220 PF00425 chorismate binding enzyme JV59_22225 PF00501 AMP-binding enzyme JV59_22225 PF13193 AMP-binding enzyme C-terminal domain JV59_22230 PF00664 ABC transporter transmembrane region JV59_22230 PF00005 ABC transporter JV59_22235 PF00664 ABC transporter transmembrane region JV59_22235 PF00005 ABC transporter JV59_22240 PF00672 HAMP domain JV59_22240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_22240 PF02743 Cache domain JV59_22260 PF00557 Metallopeptidase family M24 JV59_22275 PF01238 Phosphomannose isomerase type I JV59_22280 PF07748 Glycosyl hydrolases family 38 C-terminal domain JV59_22280 PF01074 Glycosyl hydrolases family 38 N-terminal domain JV59_22280 PF09261 Alpha mannosidase middle domain JV59_22285 PF02378 Phosphotransferase system, EIIC JV59_22285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JV59_22285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JV59_22290 PF00392 Bacterial regulatory proteins, gntR family JV59_22290 PF07702 UTRA domain JV59_22300 PF00892 EamA-like transporter family JV59_22340 PF00106 short chain dehydrogenase JV59_22350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_22350 PF03466 LysR substrate binding domain JV59_22360 PF02525 Flavodoxin-like fold JV59_22365 PF00561 alpha/beta hydrolase fold JV59_22375 PF03466 LysR substrate binding domain JV59_22375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_22410 PF17676 LD-carboxypeptidase C-terminal domain JV59_22410 PF02016 LD-carboxypeptidase N-terminal domain JV59_22415 PF01411 tRNA synthetases class II (A) JV59_22415 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JV59_22425 PF00128 Alpha amylase, catalytic domain JV59_22425 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JV59_22425 PF02806 Alpha amylase, C-terminal all-beta domain JV59_22430 PF02446 4-alpha-glucanotransferase JV59_22435 PF00343 Carbohydrate phosphorylase JV59_22440 PF17874 MalT-like TPR region JV59_22440 PF00196 Bacterial regulatory proteins, luxR family JV59_22445 PF03466 LysR substrate binding domain JV59_22445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_22460 PF10928 Protein of unknown function (DUF2810) JV59_22465 PF00132 Bacterial transferase hexapeptide (six repeats) JV59_22480 PF00672 HAMP domain JV59_22480 PF17200 Single Cache domain 2 JV59_22480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_22485 PF12833 Helix-turn-helix domain JV59_22485 PF14525 AraC-binding-like domain JV59_22490 PF00857 Isochorismatase family JV59_22495 PF04151 Bacterial pre-peptidase C-terminal domain JV59_22495 PF00082 Subtilase family JV59_22495 PF05922 Peptidase inhibitor I9 JV59_22500 PF01979 Amidohydrolase family JV59_22505 PF12852 Cupin JV59_22505 PF12833 Helix-turn-helix domain JV59_22510 PF00561 alpha/beta hydrolase fold JV59_22530 PF03795 YCII-related domain JV59_22550 PF00462 Glutaredoxin JV59_22550 PF08534 Redoxin JV59_22555 PF07729 FCD domain JV59_22555 PF00392 Bacterial regulatory proteins, gntR family JV59_22560 PF03450 CO dehydrogenase flavoprotein C-terminal domain JV59_22560 PF00941 FAD binding domain in molybdopterin dehydrogenase JV59_22565 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JV59_22565 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JV59_22575 PF01979 Amidohydrolase family JV59_22585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_22585 PF01627 Hpt domain JV59_22585 PF00072 Response regulator receiver domain JV59_22585 PF00672 HAMP domain JV59_22585 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JV59_22585 PF00512 His Kinase A (phospho-acceptor) domain JV59_22595 PF01037 Lrp/AsnC ligand binding domain JV59_22605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_22605 PF00672 HAMP domain JV59_22605 PF02743 Cache domain JV59_22615 PF04115 Ureidoglycolate lyase JV59_22620 PF03561 Allantoicase repeat JV59_22625 PF09349 OHCU decarboxylase JV59_22625 PF01014 Uricase JV59_22635 PF00576 HIUase/Transthyretin family JV59_22640 PF00860 Permease family JV59_22645 PF00860 Permease family JV59_22650 PF01979 Amidohydrolase family JV59_22655 PF00561 alpha/beta hydrolase fold JV59_22660 PF06224 Winged helix DNA-binding domain JV59_22665 PF03928 Haem-degrading JV59_22670 PF00486 Transcriptional regulatory protein, C terminal JV59_22670 PF00072 Response regulator receiver domain JV59_22685 PF00171 Aldehyde dehydrogenase family JV59_22690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_22690 PF03466 LysR substrate binding domain JV59_22700 PF00753 Metallo-beta-lactamase superfamily JV59_22715 PF00182 Chitinase class I JV59_22740 PF01040 UbiA prenyltransferase family JV59_22750 PF00510 Cytochrome c oxidase subunit III JV59_22755 PF00115 Cytochrome C and Quinol oxidase polypeptide I JV59_22760 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JV59_22760 PF06481 COX Aromatic Rich Motif JV59_22770 PF10282 Lactonase, 7-bladed beta-propeller JV59_22775 PF00728 Glycosyl hydrolase family 20, catalytic domain JV59_22775 PF02838 Glycosyl hydrolase family 20, domain 2 JV59_22780 PF01081 KDPG and KHG aldolase JV59_22785 PF00294 pfkB family carbohydrate kinase JV59_22810 PF02685 Glucokinase JV59_22810 PF01418 Helix-turn-helix domain, rpiR family JV59_22810 PF01380 SIS domain JV59_22815 PF00497 Bacterial extracellular solute-binding proteins, family 3 JV59_22820 PF02743 Cache domain JV59_22820 PF00672 HAMP domain JV59_22820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_22825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JV59_22850 PF02492 CobW/HypB/UreG, nucleotide-binding domain JV59_22855 PF01730 UreF JV59_22865 PF05194 UreE urease accessory protein, C-terminal domain JV59_22865 PF02814 UreE urease accessory protein, N-terminal domain JV59_22870 PF00449 Urease alpha-subunit, N-terminal domain JV59_22870 PF01979 Amidohydrolase family JV59_22875 PF00699 Urease beta subunit JV59_22880 PF00547 Urease, gamma subunit JV59_22885 PF01774 UreD urease accessory protein JV59_22890 PF00005 ABC transporter JV59_22895 PF00005 ABC transporter JV59_22895 PF12399 Branched-chain amino acid ATP-binding cassette transporter JV59_22905 PF02653 Branched-chain amino acid transport system / permease component JV59_22920 PF02311 AraC-like ligand binding domain JV59_22920 PF12833 Helix-turn-helix domain JV59_22950 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JV59_22950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JV59_22955 PF01261 Xylose isomerase-like TIM barrel JV59_22960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JV59_22960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JV59_22960 PF00205 Thiamine pyrophosphate enzyme, central domain JV59_22965 PF01274 Malate synthase JV59_22980 PF03606 C4-dicarboxylate anaerobic carrier JV59_22985 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JV59_22985 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain JV59_23005 PF00034 Cytochrome c JV59_23010 PF01047 MarR family JV59_23015 PF00892 EamA-like transporter family JV59_23020 PF00563 EAL domain JV59_23020 PF03707 Bacterial signalling protein N terminal repeat JV59_23020 PF00990 Diguanylate cyclase, GGDEF domain JV59_23030 PF13407 Periplasmic binding protein domain JV59_23035 PF00293 NUDIX domain JV59_23040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_23040 PF03466 LysR substrate binding domain JV59_23045 PF08803 Putative mono-oxygenase ydhR JV59_23060 PF01638 HxlR-like helix-turn-helix JV59_23095 PF01709 Transcriptional regulator JV59_23110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_23110 PF00005 ABC transporter JV59_23115 PF00005 ABC transporter JV59_23115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_23135 PF13614 AAA domain JV59_23135 PF18607 ParA helix turn helix domain JV59_23140 PF02195 ParB-like nuclease domain JV59_23140 PF08775 ParB family JV59_23145 PF13718 GNAT acetyltransferase 2 JV59_23145 PF05127 Helicase JV59_23150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_23150 PF00672 HAMP domain JV59_23160 PF00072 Response regulator receiver domain JV59_23165 PF01584 CheW-like domain JV59_23165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_23165 PF09078 CheY binding JV59_23165 PF02895 Signal transducing histidine kinase, homodimeric domain JV59_23165 PF01627 Hpt domain JV59_23170 PF01584 CheW-like domain JV59_23175 PF01584 CheW-like domain JV59_23180 PF02203 Tar ligand binding domain homologue JV59_23180 PF00672 HAMP domain JV59_23180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_23185 PF01739 CheR methyltransferase, SAM binding domain JV59_23185 PF03705 CheR methyltransferase, all-alpha domain JV59_23190 PF03975 CheD chemotactic sensory transduction JV59_23195 PF01339 CheB methylesterase JV59_23195 PF00072 Response regulator receiver domain JV59_23200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_23200 PF00672 HAMP domain JV59_23200 PF02743 Cache domain JV59_23210 PF00990 Diguanylate cyclase, GGDEF domain JV59_23210 PF00072 Response regulator receiver domain JV59_23230 PF00155 Aminotransferase class I and II JV59_23245 PF13419 Haloacid dehalogenase-like hydrolase JV59_23260 PF07690 Major Facilitator Superfamily JV59_23275 PF00529 HlyD membrane-fusion protein of T1SS JV59_23275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JV59_23285 PF00893 Small Multidrug Resistance protein JV59_23290 PF03466 LysR substrate binding domain JV59_23290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_23295 PF00528 Binding-protein-dependent transport system inner membrane component JV59_23300 PF00528 Binding-protein-dependent transport system inner membrane component JV59_23315 PF13419 Haloacid dehalogenase-like hydrolase JV59_23320 PF00005 ABC transporter JV59_23320 PF17912 MalK OB fold domain JV59_23320 PF03459 TOBE domain JV59_23325 PF00582 Universal stress protein family JV59_23335 PF00232 Glycosyl hydrolase family 1 JV59_23340 PF00905 Penicillin binding protein transpeptidase domain JV59_23340 PF03717 Penicillin-binding Protein dimerisation domain JV59_23345 PF00672 HAMP domain JV59_23345 PF02743 Cache domain JV59_23345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_23355 PF01168 Alanine racemase, N-terminal domain JV59_23355 PF14031 Putative serine dehydratase domain JV59_23365 PF03466 LysR substrate binding domain JV59_23365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_23380 PF02801 Beta-ketoacyl synthase, C-terminal domain JV59_23380 PF14765 Polyketide synthase dehydratase JV59_23380 PF16197 Ketoacyl-synthetase C-terminal extension JV59_23380 PF00550 Phosphopantetheine attachment site JV59_23380 PF08659 KR domain JV59_23380 PF08240 Alcohol dehydrogenase GroES-like domain JV59_23380 PF00109 Beta-ketoacyl synthase, N-terminal domain JV59_23380 PF00698 Acyl transferase domain JV59_23385 PF00248 Aldo/keto reductase family JV59_23390 PF08543 Phosphomethylpyrimidine kinase JV59_23395 PF00005 ABC transporter JV59_23400 PF00528 Binding-protein-dependent transport system inner membrane component JV59_23405 PF09084 NMT1/THI5 like JV59_23410 PF03070 TENA/THI-4/PQQC family JV59_23430 PF12833 Helix-turn-helix domain JV59_23430 PF06445 GyrI-like small molecule binding domain JV59_23440 PF01569 PAP2 superfamily JV59_23450 PF00534 Glycosyl transferases group 1 JV59_23460 PF00480 ROK family JV59_23475 PF00528 Binding-protein-dependent transport system inner membrane component JV59_23480 PF08402 TOBE domain JV59_23480 PF00005 ABC transporter JV59_23485 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JV59_23485 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JV59_23485 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JV59_23485 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JV59_23495 PF00990 Diguanylate cyclase, GGDEF domain JV59_23495 PF00563 EAL domain JV59_23495 PF13185 GAF domain JV59_23505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_23505 PF03466 LysR substrate binding domain JV59_23520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_23520 PF03466 LysR substrate binding domain JV59_23525 PF08659 KR domain JV59_23525 PF00109 Beta-ketoacyl synthase, N-terminal domain JV59_23525 PF16197 Ketoacyl-synthetase C-terminal extension JV59_23525 PF14765 Polyketide synthase dehydratase JV59_23525 PF00550 Phosphopantetheine attachment site JV59_23525 PF00698 Acyl transferase domain JV59_23525 PF08240 Alcohol dehydrogenase GroES-like domain JV59_23525 PF02801 Beta-ketoacyl synthase, C-terminal domain JV59_23535 PF08264 Anticodon-binding domain of tRNA JV59_23535 PF09334 tRNA synthetases class I (M) JV59_23535 PF01588 Putative tRNA binding domain JV59_23545 PF01042 Endoribonuclease L-PSP JV59_23550 PF00892 EamA-like transporter family JV59_23565 PF04542 Sigma-70 region 2 JV59_23565 PF08281 Sigma-70, region 4 JV59_23605 PF00939 Sodium:sulfate symporter transmembrane region JV59_23610 PF13426 PAS domain JV59_23610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_23610 PF00072 Response regulator receiver domain JV59_23610 PF08448 PAS fold JV59_23610 PF00512 His Kinase A (phospho-acceptor) domain JV59_23615 PF00072 Response regulator receiver domain JV59_23615 PF00486 Transcriptional regulatory protein, C terminal JV59_23635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_23635 PF03466 LysR substrate binding domain JV59_23640 PF02525 Flavodoxin-like fold JV59_23645 PF00873 AcrB/AcrD/AcrF family JV59_23650 PF13533 Biotin-lipoyl like JV59_23655 PF00486 Transcriptional regulatory protein, C terminal JV59_23655 PF00072 Response regulator receiver domain JV59_23660 PF00672 HAMP domain JV59_23660 PF01627 Hpt domain JV59_23660 PF00512 His Kinase A (phospho-acceptor) domain JV59_23660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_23660 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JV59_23660 PF00072 Response regulator receiver domain JV59_23680 PF00486 Transcriptional regulatory protein, C terminal JV59_23680 PF00072 Response regulator receiver domain JV59_23690 PF00730 HhH-GPD superfamily base excision DNA repair protein JV59_23690 PF06029 AlkA N-terminal domain JV59_23695 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JV59_23695 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JV59_23705 PF03600 Citrate transporter JV59_23710 PF07670 Nucleoside recognition JV59_23715 PF07670 Nucleoside recognition JV59_23725 PF12833 Helix-turn-helix domain JV59_23730 PF00593 TonB dependent receptor JV59_23730 PF07715 TonB-dependent Receptor Plug Domain JV59_23735 PF05922 Peptidase inhibitor I9 JV59_23735 PF04151 Bacterial pre-peptidase C-terminal domain JV59_23735 PF00082 Subtilase family JV59_23740 PF00563 EAL domain JV59_23740 PF12792 CSS motif domain associated with EAL JV59_23750 PF00158 Sigma-54 interaction domain JV59_23750 PF00072 Response regulator receiver domain JV59_23750 PF02954 Bacterial regulatory protein, Fis family JV59_23915 PF03466 LysR substrate binding domain JV59_23915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_23935 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JV59_23945 PF03480 Bacterial extracellular solute-binding protein, family 7 JV59_23950 PF03009 Glycerophosphoryl diester phosphodiesterase family JV59_23955 PF08220 DeoR-like helix-turn-helix domain JV59_23955 PF00455 DeoR C terminal sensor domain JV59_23975 PF03466 LysR substrate binding domain JV59_23975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_23980 PF01906 Putative heavy-metal-binding JV59_23985 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JV59_23990 PF03466 LysR substrate binding domain JV59_23990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_24000 PF02630 SCO1/SenC JV59_24010 PF13302 Acetyltransferase (GNAT) domain JV59_24015 PF01966 HD domain JV59_24020 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JV59_24025 PF01212 Beta-eliminating lyase JV59_24030 PF08329 Chitinase A, N-terminal domain JV59_24030 PF00704 Glycosyl hydrolases family 18 JV59_24035 PF03412 Peptidase C39 family JV59_24035 PF00664 ABC transporter transmembrane region JV59_24035 PF00005 ABC transporter JV59_24055 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JV59_24055 PF01243 Pyridoxamine 5'-phosphate oxidase JV59_24065 PF03781 Sulfatase-modifying factor enzyme 1 JV59_24075 PF12833 Helix-turn-helix domain JV59_24080 PF14850 DNA-binding domain of Proline dehydrogenase JV59_24080 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JV59_24080 PF00171 Aldehyde dehydrogenase family JV59_24080 PF01619 Proline dehydrogenase JV59_24090 PF00474 Sodium:solute symporter family JV59_24100 PF01037 Lrp/AsnC ligand binding domain JV59_24110 PF00664 ABC transporter transmembrane region JV59_24110 PF00005 ABC transporter JV59_24120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_24120 PF03466 LysR substrate binding domain JV59_24135 PF00202 Aminotransferase class-III JV59_24145 PF03616 Sodium/glutamate symporter JV59_24150 PF00529 HlyD membrane-fusion protein of T1SS JV59_24150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JV59_24155 PF11742 Protein of unknown function (DUF3302) JV59_24180 PF01048 Phosphorylase superfamily JV59_24185 PF08349 Protein of unknown function (DUF1722) JV59_24190 PF13411 MerR HTH family regulatory protein JV59_24195 PF00875 DNA photolyase JV59_24195 PF03441 FAD binding domain of DNA photolyase JV59_24200 PF01476 LysM domain JV59_24200 PF17969 L,D-transpeptidase C-terminal domain JV59_24200 PF03734 L,D-transpeptidase catalytic domain JV59_24210 PF00271 Helicase conserved C-terminal domain JV59_24210 PF00270 DEAD/DEAH box helicase JV59_24215 PF08453 Peptidase family M9 N-terminal JV59_24215 PF01752 Collagenase JV59_24220 PF03372 Endonuclease/Exonuclease/phosphatase family JV59_24230 PF04151 Bacterial pre-peptidase C-terminal domain JV59_24230 PF01752 Collagenase JV59_24230 PF08453 Peptidase family M9 N-terminal JV59_24255 PF01758 Sodium Bile acid symporter family JV59_24260 PF08240 Alcohol dehydrogenase GroES-like domain JV59_24260 PF00107 Zinc-binding dehydrogenase JV59_24270 PF13460 NAD(P)H-binding JV59_24270 PF11066 Protein of unknown function (DUF2867) JV59_24285 PF01381 Helix-turn-helix JV59_24290 PF05973 Phage derived protein Gp49-like (DUF891) JV59_24300 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JV59_24305 PF03466 LysR substrate binding domain JV59_24305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_24310 PF00106 short chain dehydrogenase JV59_24315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_24315 PF03466 LysR substrate binding domain JV59_24355 PF01928 CYTH domain JV59_24415 PF00392 Bacterial regulatory proteins, gntR family JV59_24415 PF00155 Aminotransferase class I and II JV59_24425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JV59_24425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JV59_24430 PF01925 Sulfite exporter TauE/SafE JV59_24440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_24440 PF03466 LysR substrate binding domain JV59_24485 PF00593 TonB dependent receptor JV59_24485 PF07715 TonB-dependent Receptor Plug Domain JV59_24510 PF00293 NUDIX domain JV59_24560 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JV59_24570 PF01042 Endoribonuclease L-PSP JV59_24580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_24580 PF03466 LysR substrate binding domain JV59_24600 PF04073 Aminoacyl-tRNA editing domain JV59_24685 PF13361 UvrD-like helicase C-terminal domain JV59_24685 PF00580 UvrD/REP helicase N-terminal domain JV59_24700 PF00857 Isochorismatase family JV59_24705 PF17954 Quercetinase C-terminal cupin domain JV59_24705 PF02678 Pirin JV59_24710 PF03466 LysR substrate binding domain JV59_24710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_24715 PF03193 RsgA GTPase JV59_24725 PF08361 MAATS-type transcriptional repressor, C-terminal region JV59_24725 PF00440 Bacterial regulatory proteins, tetR family JV59_24745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_24745 PF03466 LysR substrate binding domain JV59_24750 PF03412 Peptidase C39 family JV59_24750 PF00005 ABC transporter JV59_24750 PF00664 ABC transporter transmembrane region JV59_24760 PF00664 ABC transporter transmembrane region JV59_24760 PF03412 Peptidase C39 family JV59_24760 PF00005 ABC transporter JV59_24770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_24770 PF03466 LysR substrate binding domain JV59_24805 PF00990 Diguanylate cyclase, GGDEF domain JV59_24805 PF07694 5TMR of 5TMR-LYT JV59_24815 PF01497 Periplasmic binding protein JV59_24820 PF01032 FecCD transport family JV59_24825 PF00005 ABC transporter JV59_24830 PF00127 Copper binding proteins, plastocyanin/azurin family JV59_24840 PF01037 Lrp/AsnC ligand binding domain JV59_24855 PF01965 DJ-1/PfpI family JV59_24870 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JV59_24880 PF00128 Alpha amylase, catalytic domain JV59_24880 PF02806 Alpha amylase, C-terminal all-beta domain JV59_24910 PF00857 Isochorismatase family JV59_24915 PF12833 Helix-turn-helix domain JV59_24915 PF02805 Metal binding domain of Ada JV59_24960 PF00561 alpha/beta hydrolase fold JV59_24985 PF08534 Redoxin JV59_24990 PF08534 Redoxin JV59_25005 PF01546 Peptidase family M20/M25/M40 JV59_25005 PF07687 Peptidase dimerisation domain JV59_25030 PF01544 CorA-like Mg2+ transporter protein JV59_25035 PF00202 Aminotransferase class-III JV59_25075 PF02743 Cache domain JV59_25075 PF00672 HAMP domain JV59_25075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_25085 PF04002 RadC-like JAB domain JV59_25095 PF18272 single-stranded DNA binding TraI N-terminal subdomain JV59_25095 PF08751 TrwC relaxase JV59_25095 PF18340 DNA relaxase TraI 2B/2B-like domain JV59_25095 PF07057 DNA helicase TraI JV59_25125 PF06986 Type-1V conjugative transfer system mating pair stabilisation JV59_25140 PF06834 TraU protein JV59_25165 PF03743 Bacterial conjugation TrbI-like protein JV59_25195 PF03796 DnaB-like helicase C terminal domain JV59_25195 PF00772 DnaB-like helicase N terminal domain JV59_25230 PF01406 tRNA synthetases class I (C) catalytic domain JV59_25240 PF06426 Serine acetyltransferase, N-terminal JV59_25240 PF00132 Bacterial transferase hexapeptide (six repeats) JV59_25245 PF00266 Aminotransferase class-V JV59_25255 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JV59_25260 PF00550 Phosphopantetheine attachment site JV59_25260 PF13193 AMP-binding enzyme C-terminal domain JV59_25260 PF00501 AMP-binding enzyme JV59_25260 PF00668 Condensation domain JV59_25270 PF13193 AMP-binding enzyme C-terminal domain JV59_25270 PF00668 Condensation domain JV59_25270 PF00550 Phosphopantetheine attachment site JV59_25270 PF00501 AMP-binding enzyme JV59_25290 PF07690 Major Facilitator Superfamily JV59_25335 PF12102 Domain of unknown function (DUF3578) JV59_25335 PF07728 AAA domain (dynein-related subfamily) JV59_25425 PF00356 Bacterial regulatory proteins, lacI family JV59_25430 PF16875 Glycosyl hydrolase family 36 N-terminal domain JV59_25430 PF16874 Glycosyl hydrolase family 36 C-terminal domain JV59_25435 PF00474 Sodium:solute symporter family JV59_25445 PF01810 LysE type translocator JV59_25450 PF01475 Ferric uptake regulator family JV59_25530 PF01266 FAD dependent oxidoreductase JV59_25535 PF00672 HAMP domain JV59_25535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_25535 PF17200 Single Cache domain 2 JV59_25555 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JV59_25555 PF00925 GTP cyclohydrolase II JV59_25560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_25560 PF00672 HAMP domain JV59_25565 PF00563 EAL domain JV59_25565 PF08668 HDOD domain JV59_25580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JV59_25585 PF01820 D-ala D-ala ligase N-terminus JV59_25585 PF07478 D-ala D-ala ligase C-terminus JV59_25590 PF00512 His Kinase A (phospho-acceptor) domain JV59_25590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_25605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_25605 PF03466 LysR substrate binding domain JV59_25635 PF01177 Asp/Glu/Hydantoin racemase JV59_25655 PF02028 BCCT, betaine/carnitine/choline family transporter JV59_25675 PF13614 AAA domain JV59_25680 PF08775 ParB family JV59_25680 PF02195 ParB-like nuclease domain JV59_25685 PF07690 Major Facilitator Superfamily JV59_25700 PF01212 Beta-eliminating lyase JV59_25730 PF00072 Response regulator receiver domain JV59_25740 PF00512 His Kinase A (phospho-acceptor) domain JV59_25740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_25745 PF00563 EAL domain JV59_25745 PF13188 PAS domain JV59_25745 PF00990 Diguanylate cyclase, GGDEF domain JV59_25745 PF03707 Bacterial signalling protein N terminal repeat JV59_25750 PF00072 Response regulator receiver domain JV59_25750 PF02954 Bacterial regulatory protein, Fis family JV59_25750 PF00158 Sigma-54 interaction domain JV59_25785 PF00072 Response regulator receiver domain JV59_25785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_25785 PF08448 PAS fold JV59_25785 PF00512 His Kinase A (phospho-acceptor) domain JV59_25785 PF13188 PAS domain JV59_25835 PF03466 LysR substrate binding domain JV59_25835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_25840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_25840 PF03466 LysR substrate binding domain JV59_25845 PF03306 Alpha-acetolactate decarboxylase JV59_25855 PF00072 Response regulator receiver domain JV59_25855 PF00486 Transcriptional regulatory protein, C terminal JV59_25860 PF00512 His Kinase A (phospho-acceptor) domain JV59_25860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_25860 PF00672 HAMP domain JV59_25975 PF03143 Elongation factor Tu C-terminal domain JV59_25975 PF03144 Elongation factor Tu domain 2 JV59_25975 PF00009 Elongation factor Tu GTP binding domain JV59_25985 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JV59_25990 PF02357 Transcription termination factor nusG JV59_25990 PF00467 KOW motif JV59_25995 PF03946 Ribosomal protein L11, N-terminal domain JV59_25995 PF00298 Ribosomal protein L11, RNA binding domain JV59_26000 PF00687 Ribosomal protein L1p/L10e family JV59_26005 PF00466 Ribosomal protein L10 JV59_26010 PF00542 Ribosomal protein L7/L12 C-terminal domain JV59_26010 PF16320 Ribosomal protein L7/L12 dimerisation domain JV59_26015 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ JV59_26025 PF00440 Bacterial regulatory proteins, tetR family JV59_26025 PF08360 QacR-like protein, C-terminal region JV59_26035 PF00929 Exonuclease JV59_26065 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JV59_26070 PF17209 Hfq protein JV59_26075 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) JV59_26085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JV59_26085 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JV59_26090 PF13309 HTH domain JV59_26090 PF08348 YheO-like PAS domain JV59_26095 PF02635 DsrE/DsrF-like family JV59_26100 PF02635 DsrE/DsrF-like family JV59_26110 PF00164 Ribosomal protein S12/S23 JV59_26115 PF00177 Ribosomal protein S7p/S5e JV59_26120 PF03144 Elongation factor Tu domain 2 JV59_26120 PF03143 Elongation factor Tu C-terminal domain JV59_26120 PF00009 Elongation factor Tu GTP binding domain JV59_26125 PF04324 BFD-like [2Fe-2S] binding domain JV59_26130 PF00210 Ferritin-like domain JV59_26135 PF01250 Ribosomal protein S6 JV59_26140 PF01084 Ribosomal protein S18 JV59_26145 PF03948 Ribosomal protein L9, C-terminal domain JV59_26145 PF01281 Ribosomal protein L9, N-terminal domain JV59_26155 PF00772 DnaB-like helicase N terminal domain JV59_26155 PF03796 DnaB-like helicase C terminal domain JV59_26160 PF01168 Alanine racemase, N-terminal domain JV59_26160 PF00842 Alanine racemase, C-terminal domain JV59_26165 PF01894 Uncharacterised protein family UPF0047 JV59_26185 PF00005 ABC transporter JV59_26200 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JV59_26210 PF01625 Peptide methionine sulfoxide reductase JV59_26215 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like JV59_26225 PF00719 Inorganic pyrophosphatase JV59_26230 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JV59_26235 PF02875 Mur ligase family, glutamate ligase domain JV59_26235 PF08245 Mur ligase middle domain JV59_26235 PF01225 Mur ligase family, catalytic domain JV59_26240 PF02441 Flavoprotein JV59_26250 PF00528 Binding-protein-dependent transport system inner membrane component JV59_26255 PF00005 ABC transporter JV59_26260 PF04751 Protein of unknown function (DUF615) JV59_26265 PF01523 Putative modulator of DNA gyrase JV59_26270 PF01842 ACT domain JV59_26270 PF00696 Amino acid kinase family JV59_26275 PF00266 Aminotransferase class-V JV59_26290 PF00483 Nucleotidyl transferase JV59_26295 PF00196 Bacterial regulatory proteins, luxR family JV59_26300 PF00436 Single-strand binding protein family JV59_26320 PF00263 Bacterial type II and III secretion system protein JV59_26320 PF03958 Bacterial type II/III secretion system short domain JV59_26325 PF13401 AAA domain JV59_26325 PF01471 Putative peptidoglycan binding domain JV59_26335 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JV59_26335 PF00437 Type II/IV secretion system protein JV59_26400 PF04362 Bacterial Fe(2+) trafficking JV59_26485 PF02594 Uncharacterised ACR, YggU family COG1872 JV59_26490 PF03652 Holliday junction resolvase JV59_26495 PF00829 Ribosomal prokaryotic L21 protein JV59_26500 PF01016 Ribosomal L27 protein JV59_26510 PF12821 Threonine/Serine exporter, ThrE JV59_26515 PF04379 ApaG domain JV59_26545 PF09424 Yqey-like protein JV59_26550 PF01165 Ribosomal protein S21 JV59_26555 PF02152 Dihydroneopterin aldolase JV59_26560 PF04977 Septum formation initiator JV59_26565 PF00886 Ribosomal protein S16 JV59_26570 PF01245 Ribosomal protein L19 JV59_26575 PF03884 DNA gyrase inhibitor YacG JV59_26580 PF07963 Prokaryotic N-terminal methylation motif JV59_26585 PF01258 Prokaryotic dksA/traR C4-type zinc finger JV59_26590 PF06062 Uncharacterised protein family (UPF0231) JV59_26595 PF00543 Nitrogen regulatory protein P-II JV59_26610 PF01985 CRS1 / YhbY (CRM) domain JV59_26620 PF00583 Acetyltransferase (GNAT) family JV59_26625 PF03707 Bacterial signalling protein N terminal repeat JV59_26625 PF00563 EAL domain JV59_26625 PF00990 Diguanylate cyclase, GGDEF domain JV59_26645 PF08478 POTRA domain, FtsQ-type JV59_26645 PF03799 Cell division protein FtsQ JV59_26650 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JV59_26655 PF00293 NUDIX domain JV59_26660 PF01113 Dihydrodipicolinate reductase, N-terminus JV59_26660 PF05173 Dihydrodipicolinate reductase, C-terminus JV59_26670 PF01925 Sulfite exporter TauE/SafE JV59_26675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_26675 PF03466 LysR substrate binding domain JV59_26680 PF01228 Glycine radical JV59_26685 PF01261 Xylose isomerase-like TIM barrel JV59_26690 PF03167 Uracil DNA glycosylase superfamily JV59_26705 PF03883 Peroxide stress protein YaaA JV59_26710 PF01026 TatD related DNase JV59_26720 PF01791 DeoC/LacD family aldolase JV59_26725 PF01048 Phosphorylase superfamily JV59_26735 PF01965 DJ-1/PfpI family JV59_26740 PF02558 Ketopantoate reductase PanE/ApbA JV59_26740 PF08546 Ketopantoate reductase PanE/ApbA C terminal JV59_26745 PF03502 Nucleoside-specific channel-forming protein, Tsx JV59_26755 PF04542 Sigma-70 region 2 JV59_26755 PF04545 Sigma-70, region 4 JV59_26765 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JV59_26775 PF01722 BolA-like protein JV59_26780 PF04205 FMN-binding domain JV59_26785 PF02508 Rnf-Nqr subunit, membrane protein JV59_26790 PF02508 Rnf-Nqr subunit, membrane protein JV59_26800 PF01272 Transcription elongation factor, GreA/GreB, C-term JV59_26800 PF03449 Transcription elongation factor, N-terminal JV59_26810 PF18030 RimK PreATP-grasp domain JV59_26810 PF08443 RimK-like ATP-grasp domain JV59_26815 PF08443 RimK-like ATP-grasp domain JV59_26815 PF18030 RimK PreATP-grasp domain JV59_26820 PF00156 Phosphoribosyl transferase domain JV59_26825 PF07417 Sigma factor-binding transcriptional regulator Crl JV59_26830 PF03477 ATP cone domain JV59_26835 PF00677 Lumazine binding domain JV59_26840 PF00885 6,7-dimethyl-8-ribityllumazine synthase JV59_26845 PF01029 NusB family JV59_26850 PF00586 AIR synthase related protein, N-terminal domain JV59_26850 PF02769 AIR synthase related protein, C-terminal domain JV59_26855 PF04608 Phosphatidylglycerophosphatase A JV59_26860 PF11944 Protein of unknown function (DUF3461) JV59_26865 PF00557 Metallopeptidase family M24 JV59_26870 PF00318 Ribosomal protein S2 JV59_26875 PF00889 Elongation factor TS JV59_26880 PF00696 Amino acid kinase family JV59_26885 PF01765 Ribosome recycling factor JV59_26890 PF01255 Putative undecaprenyl diphosphate synthase JV59_26900 PF03938 Outer membrane protein (OmpH-like) JV59_26905 PF07977 FabA-like domain JV59_26910 PF00132 Bacterial transferase hexapeptide (six repeats) JV59_26910 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JV59_26915 PF01351 Ribonuclease HII JV59_26920 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JV59_26925 PF00034 Cytochrome c JV59_26930 PF00543 Nitrogen regulatory protein P-II JV59_26935 PF03372 Endonuclease/Exonuclease/phosphatase family JV59_26950 PF08241 Methyltransferase domain JV59_26955 PF00075 RNase H JV59_26960 PF00929 Exonuclease JV59_26965 PF13580 SIS domain JV59_26970 PF13230 Glutamine amidotransferases class-II JV59_26975 PF18389 TrmO C-terminal domain JV59_26975 PF01980 tRNA-methyltransferase O JV59_26985 PF00444 Ribosomal protein L36 JV59_26995 PF03180 NLPA lipoprotein JV59_27000 PF00528 Binding-protein-dependent transport system inner membrane component JV59_27015 PF00356 Bacterial regulatory proteins, lacI family JV59_27035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JV59_27060 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JV59_27060 PF04055 Radical SAM superfamily JV59_27065 PF03099 Biotin/lipoate A/B protein ligase family JV59_27070 PF04359 Protein of unknown function (DUF493) JV59_27075 PF00768 D-alanyl-D-alanine carboxypeptidase JV59_27075 PF07943 Penicillin-binding protein 5, C-terminal domain JV59_27080 PF05036 Sporulation related domain JV59_27080 PF03330 Lytic transglycolase JV59_27085 PF01098 Cell cycle protein JV59_27090 PF02590 Predicted SPOUT methyltransferase JV59_27100 PF06144 DNA polymerase III, delta subunit JV59_27100 PF14840 Processivity clamp loader gamma complex DNA pol III C-term JV59_27105 PF04390 Lipopolysaccharide-assembly JV59_27110 PF07295 Zinc-ribbon containing domain JV59_27115 PF03471 Transporter associated domain JV59_27115 PF00571 CBS domain JV59_27120 PF02130 Uncharacterized protein family UPF0054 JV59_27125 PF02562 PhoH-like protein JV59_27130 PF01494 FAD binding domain JV59_27135 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JV59_27140 PF00381 PTS HPr component phosphorylation site JV59_27145 PF00291 Pyridoxal-phosphate dependent enzyme JV59_27155 PF04354 ZipA, C-terminal FtsZ-binding domain JV59_27160 PF13609 Gram-negative porin JV59_27175 PF01145 SPFH domain / Band 7 family JV59_27175 PF16200 C-terminal region of band_7 JV59_27180 PF00085 Thioredoxin JV59_27185 PF00106 short chain dehydrogenase JV59_27190 PF08338 Domain of unknown function (DUF1731) JV59_27190 PF01370 NAD dependent epimerase/dehydratase family JV59_27195 PF07556 Protein of unknown function (DUF1538) JV59_27200 PF07556 Protein of unknown function (DUF1538) JV59_27215 PF12850 Calcineurin-like phosphoesterase superfamily domain JV59_27230 PF17323 Trans-membrane regulatory protein ToxS JV59_27235 PF00486 Transcriptional regulatory protein, C terminal JV59_27240 PF05191 Adenylate kinase, active site lid JV59_27245 PF00762 Ferrochelatase JV59_27260 PF13609 Gram-negative porin JV59_27270 PF01389 OmpA-like transmembrane domain JV59_27270 PF00691 OmpA family JV59_27275 PF00691 OmpA family JV59_27275 PF01389 OmpA-like transmembrane domain JV59_27300 PF05175 Methyltransferase small domain JV59_27340 PF04316 Anti-sigma-28 factor, FlgM JV59_27350 PF00072 Response regulator receiver domain JV59_27350 PF01584 CheW-like domain JV59_27355 PF01739 CheR methyltransferase, SAM binding domain JV59_27355 PF03705 CheR methyltransferase, all-alpha domain JV59_27360 PF00460 Flagella basal body rod protein JV59_27365 PF00460 Flagella basal body rod protein JV59_27365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JV59_27370 PF13860 FlgD Ig-like domain JV59_27370 PF13861 FlgD Tudor-like domain JV59_27370 PF03963 Flagellar hook capping protein - N-terminal region JV59_27375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JV59_27375 PF07559 Flagellar basal body protein FlaE JV59_27375 PF00460 Flagella basal body rod protein JV59_27380 PF00460 Flagella basal body rod protein JV59_27380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JV59_27385 PF00460 Flagella basal body rod protein JV59_27385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JV59_27390 PF02107 Flagellar L-ring protein JV59_27395 PF02119 Flagellar P-ring protein JV59_27400 PF10135 Rod binding protein JV59_27400 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JV59_27405 PF00669 Bacterial flagellin N-terminal helical region JV59_27405 PF00700 Bacterial flagellin C-terminal helical region JV59_27410 PF00700 Bacterial flagellin C-terminal helical region JV59_27410 PF07196 Flagellin hook IN motif JV59_27410 PF00669 Bacterial flagellin N-terminal helical region JV59_27415 PF00700 Bacterial flagellin C-terminal helical region JV59_27415 PF00669 Bacterial flagellin N-terminal helical region JV59_27415 PF07196 Flagellin hook IN motif JV59_27465 PF01926 50S ribosome-binding GTPase JV59_27465 PF06071 Protein of unknown function (DUF933) JV59_27470 PF01195 Peptidyl-tRNA hydrolase JV59_27475 PF14572 Phosphoribosyl synthetase-associated domain JV59_27475 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JV59_27485 PF03550 Outer membrane lipoprotein LolB JV59_27490 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JV59_27490 PF01488 Shikimate / quinate 5-dehydrogenase JV59_27490 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JV59_27495 PF13847 Methyltransferase domain JV59_27495 PF17827 PrmC N-terminal domain JV59_27505 PF00793 DAHP synthetase I family JV59_27510 PF02872 5'-nucleotidase, C-terminal domain JV59_27510 PF00149 Calcineurin-like phosphoesterase JV59_27515 PF04073 Aminoacyl-tRNA editing domain JV59_27535 PF03358 NADPH-dependent FMN reductase JV59_27540 PF03960 ArsC family JV59_27545 PF01435 Peptidase family M48 JV59_27545 PF13181 Tetratricopeptide repeat JV59_27555 PF01594 AI-2E family transporter JV59_27560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_27560 PF00672 HAMP domain JV59_27560 PF02743 Cache domain JV59_27565 PF00578 AhpC/TSA family JV59_27570 PF01842 ACT domain JV59_27575 PF00701 Dihydrodipicolinate synthetase family JV59_27585 PF13726 Na+-H+ antiporter family JV59_27585 PF03553 Na+/H+ antiporter family JV59_27590 PF00929 Exonuclease JV59_27595 PF00691 OmpA family JV59_27595 PF18393 MotY N-terminal domain JV59_27600 PF10952 Protein of unknown function (DUF2753) JV59_27605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JV59_27610 PF00633 Helix-hairpin-helix motif JV59_27610 PF00730 HhH-GPD superfamily base excision DNA repair protein JV59_27610 PF10576 Iron-sulfur binding domain of endonuclease III JV59_27620 PF03116 NQR2, RnfD, RnfE family JV59_27625 PF13375 RnfC Barrel sandwich hybrid domain JV59_27625 PF12838 4Fe-4S dicluster domain JV59_27625 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JV59_27625 PF10531 SLBB domain JV59_27630 PF04060 Putative Fe-S cluster JV59_27635 PF02508 Rnf-Nqr subunit, membrane protein JV59_27640 PF01464 Transglycosylase SLT domain JV59_27640 PF01476 LysM domain JV59_27660 PF00460 Flagella basal body rod protein JV59_27665 PF00460 Flagella basal body rod protein JV59_27665 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JV59_27670 PF13861 FlgD Tudor-like domain JV59_27670 PF03963 Flagellar hook capping protein - N-terminal region JV59_27670 PF13860 FlgD Ig-like domain JV59_27675 PF07559 Flagellar basal body protein FlaE JV59_27675 PF00460 Flagella basal body rod protein JV59_27675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JV59_27680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JV59_27680 PF00460 Flagella basal body rod protein JV59_27685 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JV59_27685 PF00460 Flagella basal body rod protein JV59_27690 PF02107 Flagellar L-ring protein JV59_27695 PF02119 Flagellar P-ring protein JV59_27700 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JV59_27700 PF10135 Rod binding protein JV59_27725 PF13677 Membrane MotB of proton-channel complex MotA/MotB JV59_27725 PF00691 OmpA family JV59_27730 PF01618 MotA/TolQ/ExbB proton channel family JV59_27735 PF04542 Sigma-70 region 2 JV59_27735 PF04545 Sigma-70, region 4 JV59_27740 PF03748 Flagellar basal body-associated protein FliL JV59_27755 PF02561 Flagellar protein FliS JV59_27760 PF07195 Flagellar hook-associated protein 2 C-terminus JV59_27760 PF02465 Flagellar hook-associated protein 2 N-terminus JV59_27760 PF07196 Flagellin hook IN motif JV59_27765 PF00700 Bacterial flagellin C-terminal helical region JV59_27765 PF00669 Bacterial flagellin N-terminal helical region JV59_27775 PF00771 FHIPEP family JV59_27780 PF01312 FlhB HrpN YscU SpaS Family JV59_27785 PF01311 Bacterial export proteins, family 1 JV59_27790 PF01313 Bacterial export proteins, family 3 JV59_27795 PF00813 FliP family JV59_27800 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JV59_27810 PF13488 Glycine zipper JV59_27810 PF00691 OmpA family JV59_27815 PF02954 Bacterial regulatory protein, Fis family JV59_27815 PF00072 Response regulator receiver domain JV59_27815 PF00158 Sigma-54 interaction domain JV59_27820 PF02049 Flagellar hook-basal body complex protein FliE JV59_27825 PF08345 Flagellar M-ring protein C-terminal JV59_27825 PF01514 Secretory protein of YscJ/FliF family JV59_27830 PF14841 FliG middle domain JV59_27830 PF14842 FliG N-terminal domain JV59_27830 PF01706 FliG C-terminal domain JV59_27840 PF18269 T3SS EscN ATPase C-terminal domain JV59_27840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JV59_27855 PF04225 Opacity-associated protein A LysM-like domain JV59_27855 PF01551 Peptidase family M23 JV59_27865 PF00271 Helicase conserved C-terminal domain JV59_27865 PF04851 Type III restriction enzyme, res subunit JV59_27865 PF02151 UvrB/uvrC motif JV59_27865 PF12344 Ultra-violet resistance protein B JV59_27865 PF17757 UvrB interaction domain JV59_27870 PF02954 Bacterial regulatory protein, Fis family JV59_27870 PF00072 Response regulator receiver domain JV59_27870 PF00158 Sigma-54 interaction domain JV59_27875 PF01627 Hpt domain JV59_27880 PF01933 Uncharacterised protein family UPF0052 JV59_27885 PF04055 Radical SAM superfamily JV59_27885 PF06463 Molybdenum Cofactor Synthesis C JV59_27890 PF00994 Probable molybdopterin binding domain JV59_27895 PF01967 MoaC family JV59_27900 PF02597 ThiS family JV59_27905 PF02391 MoaE protein JV59_27910 PF00990 Diguanylate cyclase, GGDEF domain JV59_27920 PF00571 CBS domain JV59_27925 PF01554 MatE JV59_27930 PF00403 Heavy-metal-associated domain JV59_27935 PF01048 Phosphorylase superfamily JV59_27960 PF01588 Putative tRNA binding domain JV59_27960 PF09334 tRNA synthetases class I (M) JV59_27965 PF10609 NUBPL iron-transfer P-loop NTPase JV59_27970 PF00485 Phosphoribulokinase / Uridine kinase family JV59_27975 PF05170 AsmA family JV59_27985 PF12557 Cob(I)alamin adenosyltransferase N terminal JV59_27985 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JV59_27995 PF01227 GTP cyclohydrolase I JV59_28000 PF02152 Dihydroneopterin aldolase JV59_28005 PF01227 GTP cyclohydrolase I JV59_28005 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JV59_28010 PF01451 Low molecular weight phosphotyrosine protein phosphatase JV59_28025 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JV59_28025 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JV59_28030 PF00462 Glutaredoxin JV59_28035 PF01751 Toprim domain JV59_28035 PF01131 DNA topoisomerase JV59_28045 PF01161 Phosphatidylethanolamine-binding protein JV59_28050 PF00106 short chain dehydrogenase JV59_28055 PF00850 Histone deacetylase domain JV59_28060 PF13344 Haloacid dehalogenase-like hydrolase JV59_28060 PF00293 NUDIX domain JV59_28080 PF02954 Bacterial regulatory protein, Fis family JV59_28080 PF00158 Sigma-54 interaction domain JV59_28080 PF00072 Response regulator receiver domain JV59_28085 PF00512 His Kinase A (phospho-acceptor) domain JV59_28085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_28085 PF00989 PAS fold JV59_28100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_28100 PF00672 HAMP domain JV59_28100 PF02743 Cache domain JV59_28110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_28110 PF00672 HAMP domain JV59_28110 PF02743 Cache domain JV59_28120 PF11893 Domain of unknown function (DUF3413) JV59_28120 PF00884 Sulfatase JV59_28125 PF07208 Protein of unknown function (DUF1414) JV59_28150 PF03553 Na+/H+ antiporter family JV59_28155 PF01118 Semialdehyde dehydrogenase, NAD binding domain JV59_28155 PF02774 Semialdehyde dehydrogenase, dimerisation domain JV59_28160 PF00520 Ion transport protein JV59_28160 PF00027 Cyclic nucleotide-binding domain JV59_28165 PF01914 MarC family integral membrane protein JV59_28170 PF00465 Iron-containing alcohol dehydrogenase JV59_28170 PF00171 Aldehyde dehydrogenase family JV59_28175 PF03776 Septum formation topological specificity factor MinE JV59_28185 PF03775 Septum formation inhibitor MinC, C-terminal domain JV59_28185 PF05209 Septum formation inhibitor MinC, N-terminal domain JV59_28190 PF05166 YcgL domain JV59_28195 PF13406 Transglycosylase SLT domain JV59_28200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_28200 PF03466 LysR substrate binding domain JV59_28205 PF07662 Na+ dependent nucleoside transporter C-terminus JV59_28205 PF07670 Nucleoside recognition JV59_28205 PF01773 Na+ dependent nucleoside transporter N-terminus JV59_28215 PF03692 Putative zinc- or iron-chelating domain JV59_28220 PF00924 Mechanosensitive ion channel JV59_28220 PF05552 Conserved TM helix JV59_28230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JV59_28240 PF00245 Alkaline phosphatase JV59_28255 PF13847 Methyltransferase domain JV59_28265 PF01263 Aldose 1-epimerase JV59_28270 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JV59_28270 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JV59_28285 PF07023 Protein of unknown function (DUF1315) JV59_28290 PF02810 SEC-C motif JV59_28295 PF08668 HDOD domain JV59_28295 PF00563 EAL domain JV59_28305 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JV59_28310 PF09190 DALR domain JV59_28310 PF01406 tRNA synthetases class I (C) catalytic domain JV59_28315 PF00265 Thymidine kinase JV59_28320 PF01176 Translation initiation factor 1A / IF-1 JV59_28325 PF04376 Arginine-tRNA-protein transferase, N terminus JV59_28325 PF04377 Arginine-tRNA-protein transferase, C terminus JV59_28345 PF10692 Protein of unknown function (DUF2498) JV59_28350 PF01131 DNA topoisomerase JV59_28350 PF08272 Topoisomerase I zinc-ribbon-like JV59_28350 PF01751 Toprim domain JV59_28350 PF01396 Topoisomerase DNA binding C4 zinc finger JV59_28355 PF00483 Nucleotidyl transferase JV59_28380 PF04994 TfoX C-terminal domain JV59_28380 PF04993 TfoX N-terminal domain JV59_28385 PF00356 Bacterial regulatory proteins, lacI family JV59_28390 PF02613 Nitrate reductase delta subunit JV59_28395 PF00072 Response regulator receiver domain JV59_28395 PF00486 Transcriptional regulatory protein, C terminal JV59_28400 PF02698 DUF218 domain JV59_28410 PF17192 MukF middle domain JV59_28410 PF17193 MukF C-terminal domain JV59_28410 PF03882 MukF winged-helix domain JV59_28415 PF04288 MukE-like family JV59_28425 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JV59_28425 PF12833 Helix-turn-helix domain JV59_28430 PF00171 Aldehyde dehydrogenase family JV59_28435 PF00732 GMC oxidoreductase JV59_28435 PF05199 GMC oxidoreductase JV59_28450 PF08443 RimK-like ATP-grasp domain JV59_28450 PF18030 RimK PreATP-grasp domain JV59_28460 PF13649 Methyltransferase domain JV59_28465 PF01904 Protein of unknown function DUF72 JV59_28470 PF02938 GAD domain JV59_28470 PF01336 OB-fold nucleic acid binding domain JV59_28470 PF00152 tRNA synthetases class II (D, K and N) JV59_28475 PF00849 RNA pseudouridylate synthase JV59_28480 PF03971 Monomeric isocitrate dehydrogenase JV59_28485 PF00313 'Cold-shock' DNA-binding domain JV59_28490 PF02617 ATP-dependent Clp protease adaptor protein ClpS JV59_28495 PF02861 Clp amino terminal domain, pathogenicity island component JV59_28495 PF00004 ATPase family associated with various cellular activities (AAA) JV59_28495 PF07724 AAA domain (Cdc48 subfamily) JV59_28495 PF17871 AAA lid domain JV59_28495 PF10431 C-terminal, D2-small domain, of ClpB protein JV59_28520 PF01226 Formate/nitrite transporter JV59_28525 PF03649 Uncharacterised protein family (UPF0014) JV59_28530 PF06796 Periplasmic nitrate reductase protein NapE JV59_28535 PF03264 NapC/NirT cytochrome c family, N-terminal region JV59_28540 PF00384 Molybdopterin oxidoreductase JV59_28540 PF18364 Molybdopterin oxidoreductase N-terminal domain JV59_28540 PF01568 Molydopterin dinucleotide binding domain JV59_28550 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JV59_28555 PF00106 short chain dehydrogenase JV59_28575 PF02075 Crossover junction endodeoxyribonuclease RuvC JV59_28580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_28580 PF00672 HAMP domain JV59_28580 PF02203 Tar ligand binding domain homologue JV59_28585 PF01330 RuvA N terminal domain JV59_28585 PF07499 RuvA, C-terminal domain JV59_28590 PF05496 Holliday junction DNA helicase RuvB P-loop domain JV59_28590 PF17864 RuvB AAA lid domain JV59_28590 PF05491 RuvB C-terminal winged helix domain JV59_28595 PF01654 Cytochrome bd terminal oxidase subunit I JV59_28600 PF02322 Cytochrome bd terminal oxidase subunit II JV59_28605 PF08173 Membrane bound YbgT-like protein JV59_28615 PF03061 Thioesterase superfamily JV59_28620 PF01618 MotA/TolQ/ExbB proton channel family JV59_28625 PF02472 Biopolymer transport protein ExbD/TolR JV59_28640 PF00691 OmpA family JV59_28645 PF13174 Tetratricopeptide repeat JV59_28645 PF16331 TolA binding protein trimerisation JV59_28650 PF02445 Quinolinate synthetase A protein JV59_28655 PF02600 Disulfide bond formation protein DsbB JV59_28675 PF00512 His Kinase A (phospho-acceptor) domain JV59_28675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_28675 PF09308 LuxQ, periplasmic JV59_28675 PF00072 Response regulator receiver domain JV59_28680 PF06610 L-alanine exporter JV59_28695 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JV59_28700 PF01161 Phosphatidylethanolamine-binding protein JV59_28705 PF03479 Plants and Prokaryotes Conserved (PCC) domain JV59_28705 PF00132 Bacterial transferase hexapeptide (six repeats) JV59_28705 PF12804 MobA-like NTP transferase domain JV59_28715 PF01238 Phosphomannose isomerase type I JV59_28720 PF00480 ROK family JV59_28735 PF00512 His Kinase A (phospho-acceptor) domain JV59_28735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_28735 PF00672 HAMP domain JV59_28740 PF00486 Transcriptional regulatory protein, C terminal JV59_28740 PF00072 Response regulator receiver domain JV59_28745 PF00535 Glycosyl transferase family 2 JV59_28750 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JV59_28765 PF16295 Tetracyclin repressor-like, C-terminal domain JV59_28765 PF00440 Bacterial regulatory proteins, tetR family JV59_28770 PF02770 Acyl-CoA dehydrogenase, middle domain JV59_28770 PF09317 Domain of unknown function (DUF1974) JV59_28770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JV59_28770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JV59_28775 PF12241 Trans-2-enoyl-CoA reductase catalytic region JV59_28775 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JV59_28775 PF07055 Enoyl reductase FAD binding domain JV59_28780 PF03372 Endonuclease/Exonuclease/phosphatase family JV59_28785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_28785 PF00672 HAMP domain JV59_28805 PF01925 Sulfite exporter TauE/SafE JV59_28810 PF06733 DEAD_2 JV59_28810 PF13307 Helicase C-terminal domain JV59_28820 PF00202 Aminotransferase class-III JV59_28825 PF04055 Radical SAM superfamily JV59_28825 PF06968 Biotin and Thiamin Synthesis associated domain JV59_28830 PF00155 Aminotransferase class I and II JV59_28835 PF12697 Alpha/beta hydrolase family JV59_28835 PF08241 Methyltransferase domain JV59_28875 PF16036 Chalcone isomerase-like JV59_28885 PF00206 Lyase JV59_28885 PF08328 Adenylosuccinate lyase C-terminal JV59_28890 PF04356 Protein of unknown function (DUF489) JV59_28905 PF00294 pfkB family carbohydrate kinase JV59_28910 PF00816 H-NS histone family JV59_28915 PF03553 Na+/H+ antiporter family JV59_28920 PF08029 HisG, C-terminal domain JV59_28920 PF01634 ATP phosphoribosyltransferase JV59_28925 PF00815 Histidinol dehydrogenase JV59_28930 PF00155 Aminotransferase class I and II JV59_28935 PF08645 Polynucleotide kinase 3 phosphatase JV59_28935 PF00475 Imidazoleglycerol-phosphate dehydratase JV59_28940 PF00117 Glutamine amidotransferase class-I JV59_28945 PF00977 Histidine biosynthesis protein JV59_28950 PF00977 Histidine biosynthesis protein JV59_28955 PF01502 Phosphoribosyl-AMP cyclohydrolase JV59_28955 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JV59_28960 PF01709 Transcriptional regulator JV59_28970 PF02833 DHHA2 domain JV59_28970 PF01368 DHH family JV59_28985 PF00005 ABC transporter JV59_28990 PF00005 ABC transporter JV59_28990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_28995 PF00528 Binding-protein-dependent transport system inner membrane component JV59_28995 PF12911 N-terminal TM domain of oligopeptide transport permease C JV59_29000 PF00528 Binding-protein-dependent transport system inner membrane component JV59_29005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JV59_29010 PF00158 Sigma-54 interaction domain JV59_29010 PF02954 Bacterial regulatory protein, Fis family JV59_29015 PF04012 PspA/IM30 family JV59_29020 PF06667 Phage shock protein B JV59_29025 PF04024 PspC domain JV59_29030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JV59_29030 PF00529 HlyD membrane-fusion protein of T1SS JV59_29035 PF13533 Biotin-lipoyl like JV59_29040 PF00873 AcrB/AcrD/AcrF family JV59_29045 PF03352 Methyladenine glycosylase JV59_29050 PF03280 Proteobacterial lipase chaperone protein JV59_29055 PF00561 alpha/beta hydrolase fold JV59_29060 PF01053 Cys/Met metabolism PLP-dependent enzyme JV59_29065 PF13396 Phospholipase_D-nuclease N-terminal JV59_29065 PF13091 PLD-like domain JV59_29070 PF00209 Sodium:neurotransmitter symporter family JV59_29075 PF00849 RNA pseudouridylate synthase JV59_29080 PF17785 PUA-like domain JV59_29080 PF10672 S-adenosylmethionine-dependent methyltransferase JV59_29085 PF01066 CDP-alcohol phosphatidyltransferase JV59_29090 PF00005 ABC transporter JV59_29095 PF00528 Binding-protein-dependent transport system inner membrane component JV59_29100 PF13416 Bacterial extracellular solute-binding protein JV59_29110 PF06945 Protein of unknown function (DUF1289) JV59_29125 PF03795 YCII-related domain JV59_29130 PF03061 Thioesterase superfamily JV59_29135 PF04279 Intracellular septation protein A JV59_29145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_29145 PF00072 Response regulator receiver domain JV59_29150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_29150 PF00072 Response regulator receiver domain JV59_29155 PF17327 Acyl homoserine lactone synthase JV59_29165 PF04269 Protein of unknown function, DUF440 JV59_29170 PF01132 Elongation factor P (EF-P) OB domain JV59_29170 PF08207 Elongation factor P (EF-P) KOW-like domain JV59_29170 PF09285 Elongation factor P, C-terminal JV59_29180 PF16458 Beta-prism lectin JV59_29180 PF12563 Hemolytic toxin N terminal JV59_29180 PF07968 Leukocidin/Hemolysin toxin family JV59_29200 PF00196 Bacterial regulatory proteins, luxR family JV59_29200 PF00072 Response regulator receiver domain JV59_29205 PF08459 UvrC Helix-hairpin-helix N-terminal JV59_29205 PF01541 GIY-YIG catalytic domain JV59_29205 PF02151 UvrB/uvrC motif JV59_29210 PF01066 CDP-alcohol phosphatidyltransferase JV59_29235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JV59_29245 PF07995 Glucose / Sorbosone dehydrogenase JV59_29270 PF03483 B3/4 domain JV59_29270 PF03484 tRNA synthetase B5 domain JV59_29270 PF01588 Putative tRNA binding domain JV59_29270 PF03147 Ferredoxin-fold anticodon binding domain JV59_29270 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JV59_29315 PF03466 LysR substrate binding domain JV59_29315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_29320 PF17954 Quercetinase C-terminal cupin domain JV59_29320 PF02678 Pirin JV59_29325 PF00857 Isochorismatase family JV59_29335 PF00367 phosphotransferase system, EIIB JV59_29335 PF02378 Phosphotransferase system, EIIC JV59_29340 PF00356 Bacterial regulatory proteins, lacI family JV59_29345 PF02264 LamB porin JV59_29345 PF11471 Maltoporin periplasmic N-terminal extension JV59_29350 PF08244 Glycosyl hydrolases family 32 C terminal JV59_29350 PF00251 Glycosyl hydrolases family 32 N-terminal domain JV59_29360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_29360 PF13426 PAS domain JV59_29360 PF08447 PAS fold JV59_29370 PF00563 EAL domain JV59_29370 PF08668 HDOD domain JV59_29375 PF00294 pfkB family carbohydrate kinase JV59_29380 PF13407 Periplasmic binding protein domain JV59_29380 PF00356 Bacterial regulatory proteins, lacI family JV59_29390 PF01554 MatE JV59_29395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_29395 PF03466 LysR substrate binding domain JV59_29405 PF01565 FAD binding domain JV59_29405 PF09330 D-lactate dehydrogenase, membrane binding JV59_29415 PF02653 Branched-chain amino acid transport system / permease component JV59_29420 PF00005 ABC transporter JV59_29425 PF13407 Periplasmic binding protein domain JV59_29430 PF00294 pfkB family carbohydrate kinase JV59_29435 PF00205 Thiamine pyrophosphate enzyme, central domain JV59_29435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JV59_29435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JV59_29440 PF01261 Xylose isomerase-like TIM barrel JV59_29445 PF00171 Aldehyde dehydrogenase family JV59_29505 PF00873 AcrB/AcrD/AcrF family JV59_29530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_29530 PF03466 LysR substrate binding domain JV59_29540 PF04403 Paraquat-inducible protein A JV59_29545 PF02470 MlaD protein JV59_29560 PF01144 Coenzyme A transferase JV59_29565 PF01144 Coenzyme A transferase JV59_29570 PF02803 Thiolase, C-terminal domain JV59_29570 PF00108 Thiolase, N-terminal domain JV59_29585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_29585 PF03466 LysR substrate binding domain JV59_29590 PF00083 Sugar (and other) transporter JV59_29595 PF01261 Xylose isomerase-like TIM barrel JV59_29600 PF00205 Thiamine pyrophosphate enzyme, central domain JV59_29600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JV59_29600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JV59_29605 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JV59_29605 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JV59_29615 PF01116 Fructose-bisphosphate aldolase class-II JV59_29635 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JV59_29635 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JV59_29645 PF00535 Glycosyl transferase family 2 JV59_29645 PF02709 N-terminal domain of galactosyltransferase JV59_29650 PF07690 Major Facilitator Superfamily JV59_29660 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JV59_29665 PF00072 Response regulator receiver domain JV59_29675 PF00072 Response regulator receiver domain JV59_29675 PF09308 LuxQ, periplasmic JV59_29675 PF00512 His Kinase A (phospho-acceptor) domain JV59_29675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_29680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_29680 PF00512 His Kinase A (phospho-acceptor) domain JV59_29680 PF09308 LuxQ, periplasmic JV59_29680 PF00072 Response regulator receiver domain JV59_29685 PF03150 Di-haem cytochrome c peroxidase JV59_29685 PF14376 Haem-binding domain JV59_29685 PF00034 Cytochrome c JV59_29690 PF02321 Outer membrane efflux protein JV59_29700 PF00873 AcrB/AcrD/AcrF family JV59_29705 PF00486 Transcriptional regulatory protein, C terminal JV59_29705 PF00072 Response regulator receiver domain JV59_29710 PF08521 Two-component sensor kinase N-terminal JV59_29710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_29710 PF00512 His Kinase A (phospho-acceptor) domain JV59_29720 PF00474 Sodium:solute symporter family JV59_29735 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JV59_29745 PF03480 Bacterial extracellular solute-binding protein, family 7 JV59_29750 PF03328 HpcH/HpaI aldolase/citrate lyase family JV59_29770 PF00561 alpha/beta hydrolase fold JV59_29795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_29795 PF03466 LysR substrate binding domain JV59_29840 PF03466 LysR substrate binding domain JV59_29840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_29845 PF02581 Thiamine monophosphate synthase JV59_29850 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JV59_29860 PF01235 Sodium:alanine symporter family JV59_29890 PF00563 EAL domain JV59_29890 PF03707 Bacterial signalling protein N terminal repeat JV59_29890 PF00990 Diguanylate cyclase, GGDEF domain JV59_29900 PF13495 Phage integrase, N-terminal SAM-like domain JV59_29900 PF00589 Phage integrase family JV59_29945 PF00881 Nitroreductase family JV59_29950 PF02264 LamB porin JV59_29970 PF03352 Methyladenine glycosylase JV59_29970 PF13673 Acetyltransferase (GNAT) domain JV59_29970 PF13302 Acetyltransferase (GNAT) domain JV59_29970 PF00958 GMP synthase C terminal domain JV59_29970 PF00117 Glutamine amidotransferase class-I JV59_29975 PF01327 Polypeptide deformylase JV59_29995 PF07690 Major Facilitator Superfamily JV59_30000 PF13533 Biotin-lipoyl like JV59_30005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_30005 PF03466 LysR substrate binding domain JV59_30020 PF00677 Lumazine binding domain JV59_30055 PF00106 short chain dehydrogenase JV59_30065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_30065 PF03466 LysR substrate binding domain JV59_30075 PF02583 Metal-sensitive transcriptional repressor JV59_30085 PF01039 Carboxyl transferase domain JV59_30085 PF17848 Acetyl-coA carboxylase zinc finger domain JV59_30090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_30090 PF03466 LysR substrate binding domain JV59_30100 PF00251 Glycosyl hydrolases family 32 N-terminal domain JV59_30100 PF08244 Glycosyl hydrolases family 32 C terminal JV59_30105 PF00367 phosphotransferase system, EIIB JV59_30105 PF02378 Phosphotransferase system, EIIC JV59_30110 PF00392 Bacterial regulatory proteins, gntR family JV59_30110 PF07702 UTRA domain JV59_30115 PF01386 Ribosomal L25p family JV59_30120 PF00535 Glycosyl transferase family 2 JV59_30140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JV59_30145 PF00873 AcrB/AcrD/AcrF family JV59_30170 PF00672 HAMP domain JV59_30170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_30170 PF00512 His Kinase A (phospho-acceptor) domain JV59_30175 PF00072 Response regulator receiver domain JV59_30175 PF00486 Transcriptional regulatory protein, C terminal JV59_30185 PF04851 Type III restriction enzyme, res subunit JV59_30185 PF00271 Helicase conserved C-terminal domain JV59_30190 PF00849 RNA pseudouridylate synthase JV59_30190 PF01479 S4 domain JV59_30195 PF07690 Major Facilitator Superfamily JV59_30205 PF13460 NAD(P)H-binding JV59_30205 PF11066 Protein of unknown function (DUF2867) JV59_30210 PF01554 MatE JV59_30215 PF00005 ABC transporter JV59_30230 PF06965 Na+/H+ antiporter 1 JV59_30235 PF03422 Carbohydrate binding module (family 6) JV59_30235 PF02412 Thrombospondin type 3 repeat JV59_30250 PF00202 Aminotransferase class-III JV59_30255 PF16653 Saccharopine dehydrogenase C-terminal domain JV59_30255 PF03435 Saccharopine dehydrogenase NADP binding domain JV59_30260 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JV59_30275 PF00994 Probable molybdopterin binding domain JV59_30285 PF00111 2Fe-2S iron-sulfur cluster binding domain JV59_30290 PF00268 Ribonucleotide reductase, small chain JV59_30305 PF03989 DNA gyrase C-terminal domain, beta-propeller JV59_30305 PF00521 DNA gyrase/topoisomerase IV, subunit A JV59_30310 PF12729 Four helix bundle sensory module for signal transduction JV59_30310 PF00672 HAMP domain JV59_30310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_30315 PF11230 Protein of unknown function (DUF3029) JV59_30320 PF04055 Radical SAM superfamily JV59_30345 PF01259 SAICAR synthetase JV59_30360 PF00753 Metallo-beta-lactamase superfamily JV59_30365 PF00072 Response regulator receiver domain JV59_30365 PF00486 Transcriptional regulatory protein, C terminal JV59_30370 PF16527 Two-component sensor protein CpxA, periplasmic domain JV59_30370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_30370 PF00512 His Kinase A (phospho-acceptor) domain JV59_30370 PF00672 HAMP domain JV59_30375 PF00593 TonB dependent receptor JV59_30375 PF07715 TonB-dependent Receptor Plug Domain JV59_30385 PF01618 MotA/TolQ/ExbB proton channel family JV59_30390 PF01618 MotA/TolQ/ExbB proton channel family JV59_30395 PF02472 Biopolymer transport protein ExbD/TolR JV59_30415 PF00989 PAS fold JV59_30415 PF17203 Single cache domain 3 JV59_30415 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JV59_30415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_30420 PF12431 Transcriptional regulator JV59_30420 PF00072 Response regulator receiver domain JV59_30440 PF17151 Periplasmic sensor domain JV59_30440 PF00990 Diguanylate cyclase, GGDEF domain JV59_30445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_30445 PF12729 Four helix bundle sensory module for signal transduction JV59_30445 PF00672 HAMP domain JV59_30450 PF18267 Rubredoxin NAD+ reductase C-terminal domain JV59_30450 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JV59_30450 PF04324 BFD-like [2Fe-2S] binding domain JV59_30450 PF07992 Pyridine nucleotide-disulphide oxidoreductase JV59_30450 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JV59_30455 PF13806 Rieske-like [2Fe-2S] domain JV59_30460 PF01226 Formate/nitrite transporter JV59_30465 PF14824 Sirohaem biosynthesis protein central JV59_30465 PF10414 Sirohaem synthase dimerisation region JV59_30465 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JV59_30480 PF00174 Oxidoreductase molybdopterin binding domain JV59_30485 PF01794 Ferric reductase like transmembrane component JV59_30495 PF01278 Omptin family JV59_30500 PF03466 LysR substrate binding domain JV59_30500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_30520 PF02195 ParB-like nuclease domain JV59_30530 PF03222 Tryptophan/tyrosine permease family JV59_30535 PF00072 Response regulator receiver domain JV59_30535 PF00486 Transcriptional regulatory protein, C terminal JV59_30540 PF00512 His Kinase A (phospho-acceptor) domain JV59_30540 PF00672 HAMP domain JV59_30540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_30545 PF06629 MltA-interacting protein MipA JV59_30555 PF01212 Beta-eliminating lyase JV59_30560 PF07690 Major Facilitator Superfamily JV59_30565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_30565 PF03466 LysR substrate binding domain JV59_30580 PF13556 PucR C-terminal helix-turn-helix domain JV59_30580 PF17853 GGDEF-like domain JV59_30580 PF05651 Putative sugar diacid recognition JV59_30585 PF01648 4'-phosphopantetheinyl transferase superfamily JV59_30585 PF17837 4'-phosphopantetheinyl transferase N-terminal domain JV59_30590 PF00005 ABC transporter JV59_30595 PF01497 Periplasmic binding protein JV59_30600 PF01032 FecCD transport family JV59_30605 PF00005 ABC transporter JV59_30610 PF03621 MbtH-like protein JV59_30615 PF13193 AMP-binding enzyme C-terminal domain JV59_30615 PF00668 Condensation domain JV59_30615 PF00501 AMP-binding enzyme JV59_30615 PF00550 Phosphopantetheine attachment site JV59_30620 PF07715 TonB-dependent Receptor Plug Domain JV59_30620 PF00593 TonB dependent receptor JV59_30630 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) JV59_30655 PF02397 Bacterial sugar transferase JV59_30700 PF00158 Sigma-54 interaction domain JV59_30700 PF00072 Response regulator receiver domain JV59_30700 PF02954 Bacterial regulatory protein, Fis family JV59_30705 PF00672 HAMP domain JV59_30705 PF17149 Periplasmic sensor domain found in signal transduction proteins JV59_30705 PF00512 His Kinase A (phospho-acceptor) domain JV59_30705 PF01627 Hpt domain JV59_30705 PF00072 Response regulator receiver domain JV59_30705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_30745 PF01554 MatE JV59_30750 PF00677 Lumazine binding domain JV59_30770 PF00877 NlpC/P60 family JV59_30775 PF00672 HAMP domain JV59_30775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_30775 PF17202 Single cache domain 3 JV59_30820 PF03453 MoeA N-terminal region (domain I and II) JV59_30820 PF03454 MoeA C-terminal region (domain IV) JV59_30820 PF00994 Probable molybdopterin binding domain JV59_30825 PF12804 MobA-like NTP transferase domain JV59_30830 PF00005 ABC transporter JV59_30830 PF08402 TOBE domain JV59_30835 PF00528 Binding-protein-dependent transport system inner membrane component JV59_30840 PF12849 PBP superfamily domain JV59_30845 PF02954 Bacterial regulatory protein, Fis family JV59_30845 PF00072 Response regulator receiver domain JV59_30845 PF00158 Sigma-54 interaction domain JV59_30850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_30850 PF00512 His Kinase A (phospho-acceptor) domain JV59_30850 PF00989 PAS fold JV59_30865 PF04542 Sigma-70 region 2 JV59_30865 PF08281 Sigma-70, region 4 JV59_30875 PF12848 ABC transporter JV59_30875 PF00005 ABC transporter JV59_30900 PF00873 AcrB/AcrD/AcrF family JV59_30915 PF01645 Conserved region in glutamate synthase JV59_30935 PF03591 AzlC protein JV59_30940 PF03466 LysR substrate binding domain JV59_30940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_30950 PF03466 LysR substrate binding domain JV59_30950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_30955 PF01551 Peptidase family M23 JV59_30975 PF01292 Prokaryotic cytochrome b561 JV59_30980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_30980 PF02743 Cache domain JV59_30980 PF00672 HAMP domain JV59_30985 PF02634 FdhD/NarQ family JV59_31015 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JV59_31015 PF00384 Molybdopterin oxidoreductase JV59_31015 PF01568 Molydopterin dinucleotide binding domain JV59_31020 PF13247 4Fe-4S dicluster domain JV59_31035 PF00909 Ammonium Transporter Family JV59_31040 PF02146 Sir2 family JV59_31045 PF00990 Diguanylate cyclase, GGDEF domain JV59_31045 PF17155 Gammaproteobacterial periplasmic sensor domain JV59_31050 PF13416 Bacterial extracellular solute-binding protein JV59_31055 PF00528 Binding-protein-dependent transport system inner membrane component JV59_31060 PF00528 Binding-protein-dependent transport system inner membrane component JV59_31065 PF08402 TOBE domain JV59_31065 PF00005 ABC transporter JV59_31085 PF01171 PP-loop family JV59_31090 PF13545 Crp-like helix-turn-helix domain JV59_31090 PF00027 Cyclic nucleotide-binding domain JV59_31105 PF00403 Heavy-metal-associated domain JV59_31115 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JV59_31115 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JV59_31130 PF00115 Cytochrome C and Quinol oxidase polypeptide I JV59_31145 PF00813 FliP family JV59_31150 PF01313 Bacterial export proteins, family 3 JV59_31155 PF01311 Bacterial export proteins, family 1 JV59_31160 PF01312 FlhB HrpN YscU SpaS Family JV59_31165 PF00072 Response regulator receiver domain JV59_31165 PF00196 Bacterial regulatory proteins, luxR family JV59_31175 PF01627 Hpt domain JV59_31175 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JV59_31175 PF00672 HAMP domain JV59_31175 PF00072 Response regulator receiver domain JV59_31175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_31175 PF00512 His Kinase A (phospho-acceptor) domain JV59_31220 PF04888 Secretion system effector C (SseC) like family JV59_31255 PF00753 Metallo-beta-lactamase superfamily JV59_31265 PF02797 Chalcone and stilbene synthases, C-terminal domain JV59_31265 PF00195 Chalcone and stilbene synthases, N-terminal domain JV59_31280 PF12833 Helix-turn-helix domain JV59_31300 PF01514 Secretory protein of YscJ/FliF family JV59_31320 PF05932 Tir chaperone protein (CesT) family JV59_31335 PF00771 FHIPEP family JV59_31340 PF02874 ATP synthase alpha/beta family, beta-barrel domain JV59_31340 PF18269 T3SS EscN ATPase C-terminal domain JV59_31340 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JV59_31375 PF00652 Ricin-type beta-trefoil lectin domain JV59_31375 PF07968 Leukocidin/Hemolysin toxin family JV59_31390 PF01565 FAD binding domain JV59_31390 PF04030 D-arabinono-1,4-lactone oxidase JV59_31400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_31400 PF00672 HAMP domain JV59_31400 PF12729 Four helix bundle sensory module for signal transduction JV59_31405 PF00842 Alanine racemase, C-terminal domain JV59_31405 PF01168 Alanine racemase, N-terminal domain JV59_31600 PF01810 LysE type translocator JV59_31620 PF17414 MatP C-terminal ribbon-helix-helix domain JV59_31620 PF06303 MatP N-terminal domain JV59_31625 PF13654 AAA domain JV59_31625 PF05362 Lon protease (S16) C-terminal proteolytic domain JV59_31630 PF07977 FabA-like domain JV59_31635 PF04957 Ribosome modulation factor JV59_31645 PF16326 ABC transporter C-terminal domain JV59_31645 PF12848 ABC transporter JV59_31645 PF00005 ABC transporter JV59_31660 PF07126 Cell-division protein ZapC JV59_31665 PF01180 Dihydroorotate dehydrogenase JV59_31670 PF05088 Bacterial NAD-glutamate dehydrogenase JV59_31680 PF01433 Peptidase family M1 domain JV59_31680 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JV59_31680 PF11940 Domain of unknown function (DUF3458) Ig-like fold JV59_31690 PF11818 C-terminal domain of tail specific protease (DUF3340) JV59_31690 PF00595 PDZ domain JV59_31690 PF03572 Peptidase family S41 JV59_31690 PF17804 Tail specific protease N-terminal domain JV59_31695 PF17516 ProQ C-terminal domain JV59_31695 PF04352 ProQ/FINO family JV59_31700 PF13185 GAF domain JV59_31705 PF00005 ABC transporter JV59_31705 PF00664 ABC transporter transmembrane region JV59_31710 PF04403 Paraquat-inducible protein A JV59_31715 PF02470 MlaD protein JV59_31740 PF02896 PEP-utilising enzyme, TIM barrel domain JV59_31740 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JV59_31740 PF00391 PEP-utilising enzyme, mobile domain JV59_31745 PF00793 DAHP synthetase I family JV59_31750 PF04461 Protein of unknown function (DUF520) JV59_31755 PF14824 Sirohaem biosynthesis protein central JV59_31755 PF10414 Sirohaem synthase dimerisation region JV59_31755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JV59_31760 PF00497 Bacterial extracellular solute-binding proteins, family 3 JV59_31765 PF00528 Binding-protein-dependent transport system inner membrane component JV59_31770 PF00528 Binding-protein-dependent transport system inner membrane component JV59_31775 PF00005 ABC transporter JV59_31780 PF01027 Inhibitor of apoptosis-promoting Bax1 JV59_31785 PF04358 DsrC like protein JV59_31790 PF00708 Acylphosphatase JV59_31795 PF00672 HAMP domain JV59_31795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_31795 PF02743 Cache domain JV59_31800 PF17785 PUA-like domain JV59_31800 PF10672 S-adenosylmethionine-dependent methyltransferase JV59_31815 PF00691 OmpA family JV59_31815 PF05736 OprF membrane domain JV59_31825 PF06508 Queuosine biosynthesis protein QueC JV59_31845 PF00501 AMP-binding enzyme JV59_31845 PF13193 AMP-binding enzyme C-terminal domain JV59_31845 PF16177 Acetyl-coenzyme A synthetase N-terminus JV59_31850 PF04303 PrpF protein JV59_31855 PF00330 Aconitase family (aconitate hydratase) JV59_31855 PF00694 Aconitase C-terminal domain JV59_31860 PF00285 Citrate synthase, C-terminal domain JV59_31880 PF04717 Type VI secretion system, phage-baseplate injector JV59_31880 PF16671 Actin cross-linking domain JV59_31935 PF10431 C-terminal, D2-small domain, of ClpB protein JV59_31935 PF00004 ATPase family associated with various cellular activities (AAA) JV59_31935 PF07724 AAA domain (Cdc48 subfamily) JV59_31935 PF17871 AAA lid domain JV59_31980 PF00069 Protein kinase domain JV59_32000 PF01970 Tripartite tricarboxylate transporter TctA family JV59_32010 PF13533 Biotin-lipoyl like JV59_32025 PF12792 CSS motif domain associated with EAL JV59_32025 PF00563 EAL domain JV59_32045 PF00364 Biotin-requiring enzyme JV59_32045 PF00561 alpha/beta hydrolase fold JV59_32060 PF05971 RNA methyltransferase JV59_32065 PF01863 Protein of unknown function DUF45 JV59_32085 PF00005 ABC transporter JV59_32090 PF03466 LysR substrate binding domain JV59_32090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_32105 PF00990 Diguanylate cyclase, GGDEF domain JV59_32125 PF01032 FecCD transport family JV59_32130 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JV59_32140 PF00300 Histidine phosphatase superfamily (branch 1) JV59_32145 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JV59_32150 PF02654 Cobalamin-5-phosphate synthase JV59_32160 PF01613 Flavin reductase like domain JV59_32165 PF13460 NAD(P)H-binding JV59_32295 PF00574 Clp protease JV59_32345 PF02463 RecF/RecN/SMC N terminal domain JV59_32375 PF00717 Peptidase S24-like JV59_32375 PF01381 Helix-turn-helix JV59_32420 PF13356 Arm DNA-binding domain JV59_32420 PF14659 Phage integrase, N-terminal SAM-like domain JV59_32420 PF00589 Phage integrase family JV59_32425 PF00929 Exonuclease JV59_32425 PF08411 Exonuclease C-terminal JV59_32430 PF03788 LrgA family JV59_32435 PF04172 LrgB-like family JV59_32445 PF11871 Domain of unknown function (DUF3391) JV59_32445 PF01966 HD domain JV59_32450 PF02222 ATP-grasp domain JV59_32475 PF05724 Thiopurine S-methyltransferase (TPMT) JV59_32495 PF07070 SpoOM protein JV59_32500 PF07702 UTRA domain JV59_32500 PF00392 Bacterial regulatory proteins, gntR family JV59_32505 PF01979 Amidohydrolase family JV59_32510 PF00491 Arginase family JV59_32515 PF17391 Urocanase N-terminal domain JV59_32515 PF17392 Urocanase C-terminal domain JV59_32515 PF01175 Urocanase Rossmann-like domain JV59_32520 PF00221 Aromatic amino acid lyase JV59_32530 PF04191 Phospholipid methyltransferase JV59_32555 PF02798 Glutathione S-transferase, N-terminal domain JV59_32555 PF14497 Glutathione S-transferase, C-terminal domain JV59_32565 PF04209 homogentisate 1,2-dioxygenase JV59_32570 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JV59_32575 PF07687 Peptidase dimerisation domain JV59_32575 PF01546 Peptidase family M20/M25/M40 JV59_32590 PF13419 Haloacid dehalogenase-like hydrolase JV59_32595 PF00132 Bacterial transferase hexapeptide (six repeats) JV59_32595 PF14602 Hexapeptide repeat of succinyl-transferase JV59_32595 PF12804 MobA-like NTP transferase domain JV59_32610 PF00583 Acetyltransferase (GNAT) family JV59_32640 PF13673 Acetyltransferase (GNAT) domain JV59_32695 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) JV59_32725 PF00583 Acetyltransferase (GNAT) family JV59_32740 PF08274 PhnA Zinc-Ribbon JV59_32740 PF03831 PhnA domain JV59_32755 PF00583 Acetyltransferase (GNAT) family JV59_32760 PF01925 Sulfite exporter TauE/SafE JV59_32770 PF08267 Cobalamin-independent synthase, N-terminal domain JV59_32770 PF01717 Cobalamin-independent synthase, Catalytic domain JV59_32785 PF09905 DNA-binding protein VF530 JV59_32790 PF13419 Haloacid dehalogenase-like hydrolase JV59_32865 PF00892 EamA-like transporter family JV59_32880 PF00210 Ferritin-like domain JV59_32885 PF01734 Patatin-like phospholipase JV59_32890 PF02743 Cache domain JV59_32890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_32890 PF00672 HAMP domain JV59_32900 PF00072 Response regulator receiver domain JV59_32900 PF00196 Bacterial regulatory proteins, luxR family JV59_32905 PF07730 Histidine kinase JV59_32905 PF17200 Single Cache domain 2 JV59_32910 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JV59_32920 PF03480 Bacterial extracellular solute-binding protein, family 7 JV59_32935 PF00753 Metallo-beta-lactamase superfamily JV59_32940 PF05951 Bacterial protein of unknown function (DUF882) JV59_32945 PF01471 Putative peptidoglycan binding domain JV59_32945 PF03734 L,D-transpeptidase catalytic domain JV59_32970 PF00925 GTP cyclohydrolase II JV59_32980 PF00990 Diguanylate cyclase, GGDEF domain JV59_33000 PF13302 Acetyltransferase (GNAT) domain JV59_33005 PF18024 Helix-turn-helix domain JV59_33005 PF00158 Sigma-54 interaction domain JV59_33010 PF05128 Domain of unknown function (DUF697) JV59_33015 PF04317 YcjX-like family, DUF463 JV59_33030 PF04715 Anthranilate synthase component I, N terminal region JV59_33030 PF00425 chorismate binding enzyme JV59_33035 PF09308 LuxQ, periplasmic JV59_33035 PF00072 Response regulator receiver domain JV59_33035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_33035 PF00512 His Kinase A (phospho-acceptor) domain JV59_33045 PF00293 NUDIX domain JV59_33050 PF03222 Tryptophan/tyrosine permease family JV59_33055 PF03315 Serine dehydratase beta chain JV59_33055 PF03313 Serine dehydratase alpha chain JV59_33060 PF00563 EAL domain JV59_33060 PF03707 Bacterial signalling protein N terminal repeat JV59_33060 PF00990 Diguanylate cyclase, GGDEF domain JV59_33065 PF03222 Tryptophan/tyrosine permease family JV59_33075 PF00672 HAMP domain JV59_33075 PF02743 Cache domain JV59_33075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_33080 PF00152 tRNA synthetases class II (D, K and N) JV59_33080 PF01336 OB-fold nucleic acid binding domain JV59_33090 PF00155 Aminotransferase class I and II JV59_33090 PF00392 Bacterial regulatory proteins, gntR family JV59_33100 PF00672 HAMP domain JV59_33100 PF01966 HD domain JV59_33105 PF00155 Aminotransferase class I and II JV59_33120 PF11898 Domain of unknown function (DUF3418) JV59_33120 PF04408 Helicase associated domain (HA2) JV59_33120 PF00271 Helicase conserved C-terminal domain JV59_33120 PF00270 DEAD/DEAH box helicase JV59_33120 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JV59_33125 PF00390 Malic enzyme, N-terminal domain JV59_33125 PF03949 Malic enzyme, NAD binding domain JV59_33135 PF02698 DUF218 domain JV59_33145 PF05193 Peptidase M16 inactive domain JV59_33145 PF00675 Insulinase (Peptidase family M16) JV59_33160 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JV59_33165 PF00266 Aminotransferase class-V JV59_33175 PF07992 Pyridine nucleotide-disulphide oxidoreductase JV59_33180 PF00664 ABC transporter transmembrane region JV59_33180 PF00005 ABC transporter JV59_33185 PF00664 ABC transporter transmembrane region JV59_33185 PF00005 ABC transporter JV59_33190 PF07690 Major Facilitator Superfamily JV59_33195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_33195 PF03466 LysR substrate binding domain JV59_33200 PF02567 Phenazine biosynthesis-like protein JV59_33205 PF00849 RNA pseudouridylate synthase JV59_33205 PF01479 S4 domain JV59_33210 PF03707 Bacterial signalling protein N terminal repeat JV59_33210 PF00563 EAL domain JV59_33210 PF00990 Diguanylate cyclase, GGDEF domain JV59_33220 PF02811 PHP domain JV59_33225 PF08056 Tryptophan operon leader peptide JV59_33230 PF00425 chorismate binding enzyme JV59_33230 PF04715 Anthranilate synthase component I, N terminal region JV59_33235 PF00117 Glutamine amidotransferase class-I JV59_33240 PF00591 Glycosyl transferase family, a/b domain JV59_33240 PF02885 Glycosyl transferase family, helical bundle domain JV59_33245 PF00218 Indole-3-glycerol phosphate synthase JV59_33245 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JV59_33250 PF00291 Pyridoxal-phosphate dependent enzyme JV59_33255 PF00290 Tryptophan synthase alpha chain JV59_33260 PF00375 Sodium:dicarboxylate symporter family JV59_33375 PF02954 Bacterial regulatory protein, Fis family JV59_33375 PF13185 GAF domain JV59_33375 PF00158 Sigma-54 interaction domain JV59_33390 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JV59_33390 PF00271 Helicase conserved C-terminal domain JV59_33390 PF04408 Helicase associated domain (HA2) JV59_33390 PF11898 Domain of unknown function (DUF3418) JV59_33390 PF00270 DEAD/DEAH box helicase JV59_33430 PF00012 Hsp70 protein JV59_33435 PF00012 Hsp70 protein JV59_33445 PF03150 Di-haem cytochrome c peroxidase JV59_33445 PF00034 Cytochrome c JV59_33470 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JV59_33470 PF12833 Helix-turn-helix domain JV59_33480 PF04116 Fatty acid hydroxylase superfamily JV59_33490 PF05656 Protein of unknown function (DUF805) JV59_33505 PF02627 Carboxymuconolactone decarboxylase family JV59_33510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_33510 PF00672 HAMP domain JV59_33510 PF02743 Cache domain JV59_33530 PF01323 DSBA-like thioredoxin domain JV59_33535 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JV59_33535 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JV59_33545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_33545 PF03466 LysR substrate binding domain JV59_33555 PF01047 MarR family JV59_33560 PF02566 OsmC-like protein JV59_33565 PF08267 Cobalamin-independent synthase, N-terminal domain JV59_33565 PF01717 Cobalamin-independent synthase, Catalytic domain JV59_33585 PF00563 EAL domain JV59_33585 PF00990 Diguanylate cyclase, GGDEF domain JV59_33585 PF03707 Bacterial signalling protein N terminal repeat JV59_33590 PF04055 Radical SAM superfamily JV59_33590 PF11842 Domain of unknown function (DUF3362) JV59_33590 PF08497 Radical SAM N-terminal JV59_33595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_33595 PF00672 HAMP domain JV59_33595 PF12729 Four helix bundle sensory module for signal transduction JV59_33600 PF00266 Aminotransferase class-V JV59_33610 PF00512 His Kinase A (phospho-acceptor) domain JV59_33610 PF00497 Bacterial extracellular solute-binding proteins, family 3 JV59_33610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_33625 PF04993 TfoX N-terminal domain JV59_33625 PF04994 TfoX C-terminal domain JV59_33635 PF03956 Lysine exporter LysO JV59_33645 PF00282 Pyridoxal-dependent decarboxylase conserved domain JV59_33650 PF01418 Helix-turn-helix domain, rpiR family JV59_33650 PF01380 SIS domain JV59_33655 PF00465 Iron-containing alcohol dehydrogenase JV59_33655 PF00171 Aldehyde dehydrogenase family JV59_33685 PF09669 Phage regulatory protein Rha (Phage_pRha) JV59_33685 PF10549 ORF11CD3 domain JV59_33735 PF00589 Phage integrase family JV59_33735 PF13495 Phage integrase, N-terminal SAM-like domain JV59_33740 PF00462 Glutaredoxin JV59_33745 PF02080 TrkA-C domain JV59_33745 PF06826 Predicted Permease Membrane Region JV59_33750 PF00528 Binding-protein-dependent transport system inner membrane component JV59_33755 PF00528 Binding-protein-dependent transport system inner membrane component JV59_33765 PF02901 Pyruvate formate lyase-like JV59_33765 PF01228 Glycine radical JV59_33775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_33775 PF00672 HAMP domain JV59_33780 PF04055 Radical SAM superfamily JV59_33790 PF06629 MltA-interacting protein MipA JV59_33795 PF06798 PrkA serine protein kinase C-terminal domain JV59_33795 PF08298 PrkA AAA domain JV59_33800 PF04285 Protein of unknown function (DUF444) JV59_33805 PF04293 SpoVR like protein JV59_33810 PF02348 Cytidylyltransferase JV59_33815 PF03966 Trm112p-like protein JV59_33820 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JV59_33825 PF00005 ABC transporter JV59_33825 PF00664 ABC transporter transmembrane region JV59_33830 PF03772 Competence protein JV59_33830 PF00753 Metallo-beta-lactamase superfamily JV59_33840 PF02687 FtsX-like permease family JV59_33840 PF12704 MacB-like periplasmic core domain JV59_33845 PF00005 ABC transporter JV59_33850 PF02687 FtsX-like permease family JV59_33850 PF12704 MacB-like periplasmic core domain JV59_33860 PF03461 TRCF domain JV59_33860 PF02559 CarD-like/TRCF domain JV59_33860 PF00270 DEAD/DEAH box helicase JV59_33860 PF17757 UvrB interaction domain JV59_33860 PF00271 Helicase conserved C-terminal domain JV59_33880 PF07992 Pyridine nucleotide-disulphide oxidoreductase JV59_33885 PF05728 Uncharacterised protein family (UPF0227) JV59_33895 PF13036 Peptidoglycan-synthase activator LpoB JV59_33895 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JV59_33910 PF01230 HIT domain JV59_33915 PF00672 HAMP domain JV59_33915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_33925 PF00392 Bacterial regulatory proteins, gntR family JV59_33925 PF07840 FadR C-terminal domain JV59_33930 PF06450 Bacterial Na+/H+ antiporter B (NhaB) JV59_33935 PF02600 Disulfide bond formation protein DsbB JV59_33940 PF01580 FtsK/SpoIIIE family JV59_33940 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JV59_33940 PF09397 Ftsk gamma domain JV59_33940 PF17854 FtsK alpha domain JV59_33945 PF01037 Lrp/AsnC ligand binding domain JV59_33950 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JV59_33950 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JV59_33955 PF04217 Protein of unknown function, DUF412 JV59_33960 PF00871 Acetokinase family JV59_33965 PF07085 DRTGG domain JV59_33965 PF01515 Phosphate acetyl/butaryl transferase JV59_33970 PF00990 Diguanylate cyclase, GGDEF domain JV59_33970 PF17151 Periplasmic sensor domain JV59_33975 PF13409 Glutathione S-transferase, N-terminal domain JV59_33980 PF00005 ABC transporter JV59_33980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_33985 PF00005 ABC transporter JV59_33985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_33990 PF12911 N-terminal TM domain of oligopeptide transport permease C JV59_33990 PF00528 Binding-protein-dependent transport system inner membrane component JV59_33995 PF00528 Binding-protein-dependent transport system inner membrane component JV59_34000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JV59_34015 PF17158 Membrane-associated sensor, integral membrane domain JV59_34015 PF00990 Diguanylate cyclase, GGDEF domain JV59_34030 PF02743 Cache domain JV59_34030 PF00672 HAMP domain JV59_34030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_34035 PF04151 Bacterial pre-peptidase C-terminal domain JV59_34035 PF04389 Peptidase family M28 JV59_34040 PF05922 Peptidase inhibitor I9 JV59_34040 PF00082 Subtilase family JV59_34040 PF04151 Bacterial pre-peptidase C-terminal domain JV59_34045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_34045 PF00672 HAMP domain JV59_34045 PF02743 Cache domain JV59_34055 PF16200 C-terminal region of band_7 JV59_34055 PF01145 SPFH domain / Band 7 family JV59_34075 PF12704 MacB-like periplasmic core domain JV59_34075 PF02687 FtsX-like permease family JV59_34075 PF00005 ABC transporter JV59_34080 PF12704 MacB-like periplasmic core domain JV59_34080 PF02687 FtsX-like permease family JV59_34080 PF00005 ABC transporter JV59_34085 PF12704 MacB-like periplasmic core domain JV59_34085 PF02687 FtsX-like permease family JV59_34095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JV59_34105 PF04151 Bacterial pre-peptidase C-terminal domain JV59_34105 PF02868 Thermolysin metallopeptidase, alpha-helical domain JV59_34105 PF01447 Thermolysin metallopeptidase, catalytic domain JV59_34105 PF03413 Peptidase propeptide and YPEB domain JV59_34105 PF07504 Fungalysin/Thermolysin Propeptide Motif JV59_34115 PF00326 Prolyl oligopeptidase family JV59_34115 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JV59_34120 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JV59_34120 PF18416 N-acetylglucosamine binding protein domain 2 JV59_34135 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JV59_34135 PF13632 Glycosyl transferase family group 2 JV59_34140 PF02350 UDP-N-acetylglucosamine 2-epimerase JV59_34145 PF07075 Protein of unknown function (DUF1343) JV59_34150 PF00933 Glycosyl hydrolase family 3 N terminal domain JV59_34150 PF01915 Glycosyl hydrolase family 3 C-terminal domain JV59_34165 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JV59_34170 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JV59_34175 PF03480 Bacterial extracellular solute-binding protein, family 7 JV59_34180 PF01266 FAD dependent oxidoreductase JV59_34195 PF03601 Conserved hypothetical protein 698 JV59_34200 PF00205 Thiamine pyrophosphate enzyme, central domain JV59_34200 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JV59_34200 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JV59_34205 PF07728 AAA domain (dynein-related subfamily) JV59_34205 PF08406 CbbQ/NirQ/NorQ C-terminal JV59_34205 PF12556 Cobaltochelatase CobS subunit N terminal JV59_34210 PF06213 Cobalamin biosynthesis protein CobT JV59_34210 PF11775 Cobalamin biosynthesis protein CobT VWA domain JV59_34215 PF01925 Sulfite exporter TauE/SafE JV59_34220 PF01515 Phosphate acetyl/butaryl transferase JV59_34225 PF09339 IclR helix-turn-helix domain JV59_34225 PF01614 Bacterial transcriptional regulator JV59_34255 PF00990 Diguanylate cyclase, GGDEF domain JV59_34255 PF05230 MASE2 domain JV59_34265 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JV59_34270 PF09619 Type III secretion system lipoprotein chaperone (YscW) JV59_34290 PF01037 Lrp/AsnC ligand binding domain JV59_34290 PF13404 AsnC-type helix-turn-helix domain JV59_34295 PF00291 Pyridoxal-phosphate dependent enzyme JV59_34315 PF07690 Major Facilitator Superfamily JV59_34320 PF03601 Conserved hypothetical protein 698 JV59_34325 PF13193 AMP-binding enzyme C-terminal domain JV59_34325 PF00501 AMP-binding enzyme JV59_34330 PF13378 Enolase C-terminal domain-like JV59_34335 PF00378 Enoyl-CoA hydratase/isomerase JV59_34340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JV59_34340 PF16582 Middle domain of thiamine pyrophosphate JV59_34340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JV59_34345 PF00425 chorismate binding enzyme JV59_34350 PF00155 Aminotransferase class I and II JV59_34360 PF00704 Glycosyl hydrolases family 18 JV59_34370 PF01966 HD domain JV59_34370 PF13286 Phosphohydrolase-associated domain JV59_34375 PF00962 Adenosine/AMP deaminase JV59_34390 PF00271 Helicase conserved C-terminal domain JV59_34390 PF00270 DEAD/DEAH box helicase JV59_34395 PF01343 Peptidase family S49 JV59_34395 PF08496 Peptidase family S49 N-terminal JV59_34400 PF00106 short chain dehydrogenase JV59_34410 PF01336 OB-fold nucleic acid binding domain JV59_34410 PF07733 Bacterial DNA polymerase III alpha NTPase domain JV59_34410 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JV59_34410 PF14579 Helix-hairpin-helix motif JV59_34410 PF02811 PHP domain JV59_34415 PF00072 Response regulator receiver domain JV59_34415 PF01584 CheW-like domain JV59_34420 PF00480 ROK family JV59_34425 PF00224 Pyruvate kinase, barrel domain JV59_34425 PF02887 Pyruvate kinase, alpha/beta domain JV59_34430 PF01734 Patatin-like phospholipase JV59_34445 PF00209 Sodium:neurotransmitter symporter family JV59_34455 PF00367 phosphotransferase system, EIIB JV59_34455 PF02378 Phosphotransferase system, EIIC JV59_34460 PF01026 TatD related DNase JV59_34465 PF09115 DNA polymerase III, delta subunit, C terminal JV59_34470 PF02223 Thymidylate kinase JV59_34475 PF02618 YceG-like family JV59_34480 PF01063 Amino-transferase class IV JV59_34485 PF00109 Beta-ketoacyl synthase, N-terminal domain JV59_34485 PF02801 Beta-ketoacyl synthase, C-terminal domain JV59_34490 PF00550 Phosphopantetheine attachment site JV59_34500 PF00698 Acyl transferase domain JV59_34505 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JV59_34505 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JV59_34510 PF02504 Fatty acid synthesis protein JV59_34520 PF02620 Large ribosomal RNA subunit accumulation protein YceD JV59_34525 PF02545 Maf-like protein JV59_34530 PF00849 RNA pseudouridylate synthase JV59_34530 PF01479 S4 domain JV59_34535 PF12111 Polyribonucleotide phosphorylase C terminal JV59_34535 PF10150 Ribonuclease E/G family JV59_34535 PF00575 S1 RNA binding domain JV59_34540 PF01740 STAS domain JV59_34540 PF00916 Sulfate permease family JV59_34545 PF01612 3'-5' exonuclease JV59_34545 PF00570 HRDC domain JV59_34550 PF00501 AMP-binding enzyme JV59_34550 PF13193 AMP-binding enzyme C-terminal domain JV59_34555 PF00561 alpha/beta hydrolase fold JV59_34570 PF00814 Glycoprotease family JV59_34575 PF13307 Helicase C-terminal domain JV59_34575 PF04851 Type III restriction enzyme, res subunit JV59_34585 PF00551 Formyl transferase JV59_34585 PF01842 ACT domain JV59_34590 PF07992 Pyridine nucleotide-disulphide oxidoreductase JV59_34590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JV59_34595 PF01343 Peptidase family S49 JV59_34600 PF00710 Asparaginase, N-terminal JV59_34600 PF17763 Glutaminase/Asparaginase C-terminal domain JV59_34610 PF02403 Seryl-tRNA synthetase N-terminal domain JV59_34610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JV59_34615 PF12002 MgsA AAA+ ATPase C terminal JV59_34615 PF16193 AAA C-terminal domain JV59_34615 PF00004 ATPase family associated with various cellular activities (AAA) JV59_34620 PF03548 Outer membrane lipoprotein carrier protein LolA JV59_34625 PF07516 SecA Wing and Scaffold domain JV59_34625 PF01043 SecA preprotein cross-linking domain JV59_34625 PF07517 SecA DEAD-like domain JV59_34625 PF02810 SEC-C motif JV59_34635 PF01207 Dihydrouridine synthase (Dus) JV59_34640 PF05230 MASE2 domain JV59_34640 PF00990 Diguanylate cyclase, GGDEF domain JV59_34645 PF00005 ABC transporter JV59_34650 PF02653 Branched-chain amino acid transport system / permease component JV59_34665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_34665 PF03466 LysR substrate binding domain JV59_34680 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JV59_34685 PF18073 Rubredoxin metal binding domain JV59_34690 PF06305 Lipopolysaccharide assembly protein A domain JV59_34695 PF00216 Bacterial DNA-binding protein JV59_34700 PF00575 S1 RNA binding domain JV59_34705 PF02224 Cytidylate kinase JV59_34715 PF13145 PPIC-type PPIASE domain JV59_34720 PF00216 Bacterial DNA-binding protein JV59_34725 PF00004 ATPase family associated with various cellular activities (AAA) JV59_34725 PF05362 Lon protease (S16) C-terminal proteolytic domain JV59_34725 PF02190 ATP-dependent protease La (LON) substrate-binding domain JV59_34730 PF06689 ClpX C4-type zinc finger JV59_34730 PF07724 AAA domain (Cdc48 subfamily) JV59_34730 PF10431 C-terminal, D2-small domain, of ClpB protein JV59_34735 PF00574 Clp protease JV59_34740 PF05698 Bacterial trigger factor protein (TF) C-terminus JV59_34740 PF05697 Bacterial trigger factor protein (TF) JV59_34740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JV59_34745 PF02743 Cache domain JV59_34745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_34745 PF00512 His Kinase A (phospho-acceptor) domain JV59_34750 PF00158 Sigma-54 interaction domain JV59_34750 PF00072 Response regulator receiver domain JV59_34750 PF02954 Bacterial regulatory protein, Fis family JV59_34760 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JV59_34765 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JV59_34770 PF03480 Bacterial extracellular solute-binding protein, family 7 JV59_34775 PF17912 MalK OB fold domain JV59_34775 PF00005 ABC transporter JV59_34775 PF03459 TOBE domain JV59_34780 PF00528 Binding-protein-dependent transport system inner membrane component JV59_34785 PF01547 Bacterial extracellular solute-binding protein JV59_34790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_34790 PF00672 HAMP domain JV59_34790 PF00512 His Kinase A (phospho-acceptor) domain JV59_34795 PF00486 Transcriptional regulatory protein, C terminal JV59_34795 PF00072 Response regulator receiver domain JV59_34800 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JV59_34815 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JV59_34815 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JV59_34820 PF13662 Toprim domain JV59_34820 PF02132 RecR protein JV59_34825 PF02575 YbaB/EbfC DNA-binding family JV59_34830 PF12169 DNA polymerase III subunits gamma and tau domain III JV59_34830 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JV59_34830 PF12170 DNA polymerase III tau subunit V interacting with alpha JV59_34835 PF00156 Phosphoribosyl transferase domain JV59_34840 PF04304 Protein of unknown function (DUF454) JV59_34850 PF00072 Response regulator receiver domain JV59_34855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_34855 PF03466 LysR substrate binding domain JV59_34860 PF00881 Nitroreductase family JV59_34865 PF00378 Enoyl-CoA hydratase/isomerase JV59_34865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JV59_34865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JV59_34870 PF02803 Thiolase, C-terminal domain JV59_34870 PF00108 Thiolase, N-terminal domain JV59_34875 PF08281 Sigma-70, region 4 JV59_34875 PF04542 Sigma-70 region 2 JV59_34885 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JV59_34890 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JV59_34895 PF04333 MlaA lipoprotein JV59_34900 PF03918 Cytochrome C biogenesis protein JV59_34905 PF03918 Cytochrome C biogenesis protein JV59_34910 PF08534 Redoxin JV59_34915 PF01578 Cytochrome C assembly protein JV59_34915 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JV59_34920 PF03100 CcmE JV59_34925 PF04995 Heme exporter protein D (CcmD) JV59_34930 PF01578 Cytochrome C assembly protein JV59_34935 PF00005 ABC transporter JV59_34945 PF01584 CheW-like domain JV59_34955 PF13614 AAA domain JV59_34960 PF01339 CheB methylesterase JV59_34960 PF00072 Response regulator receiver domain JV59_34965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_34965 PF07194 P2 response regulator binding domain JV59_34965 PF01627 Hpt domain JV59_34965 PF01584 CheW-like domain JV59_34965 PF02895 Signal transducing histidine kinase, homodimeric domain JV59_34970 PF04344 Chemotaxis phosphatase, CheZ JV59_34975 PF00072 Response regulator receiver domain JV59_34980 PF04539 Sigma-70 region 3 JV59_34980 PF04542 Sigma-70 region 2 JV59_34980 PF04545 Sigma-70, region 4 JV59_34985 PF10609 NUBPL iron-transfer P-loop NTPase JV59_34990 PF00448 SRP54-type protein, GTPase domain JV59_34995 PF00771 FHIPEP family JV59_35000 PF00300 Histidine phosphatase superfamily (branch 1) JV59_35005 PF00675 Insulinase (Peptidase family M16) JV59_35005 PF05193 Peptidase M16 inactive domain JV59_35010 PF06185 YecM protein JV59_35015 PF05746 DALR anticodon binding domain JV59_35015 PF00750 tRNA synthetases class I (R) JV59_35015 PF03485 Arginyl tRNA synthetase N terminal domain JV59_35030 PF02421 Ferrous iron transport protein B JV59_35030 PF07670 Nucleoside recognition JV59_35030 PF07664 Ferrous iron transport protein B C terminus JV59_35035 PF04023 FeoA domain JV59_35040 PF12833 Helix-turn-helix domain JV59_35040 PF02311 AraC-like ligand binding domain JV59_35045 PF01297 Zinc-uptake complex component A periplasmic JV59_35050 PF00005 ABC transporter JV59_35055 PF00156 Phosphoribosyl transferase domain JV59_35060 PF02674 Colicin V production protein JV59_35065 PF05036 Sporulation related domain JV59_35070 PF02875 Mur ligase family, glutamate ligase domain JV59_35070 PF08245 Mur ligase middle domain JV59_35075 PF17848 Acetyl-coA carboxylase zinc finger domain JV59_35075 PF01039 Carboxyl transferase domain JV59_35080 PF01416 tRNA pseudouridine synthase JV59_35090 PF01118 Semialdehyde dehydrogenase, NAD binding domain JV59_35090 PF02774 Semialdehyde dehydrogenase, dimerisation domain JV59_35095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JV59_35095 PF11890 Domain of unknown function (DUF3410) JV59_35095 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JV59_35100 PF02801 Beta-ketoacyl synthase, C-terminal domain JV59_35100 PF00109 Beta-ketoacyl synthase, N-terminal domain JV59_35110 PF03358 NADPH-dependent FMN reductase JV59_35115 PF08891 YfcL protein JV59_35130 PF04315 Elongation factor P hydroxylase JV59_35135 PF03458 UPF0126 domain JV59_35145 PF01264 Chorismate synthase JV59_35150 PF05175 Methyltransferase small domain JV59_35155 PF01713 Smr domain JV59_35160 PF01312 FlhB HrpN YscU SpaS Family JV59_35165 PF01311 Bacterial export proteins, family 1 JV59_35170 PF01313 Bacterial export proteins, family 3 JV59_35175 PF00813 FliP family JV59_35180 PF04347 Flagellar biosynthesis protein, FliO JV59_35185 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JV59_35190 PF02154 Flagellar motor switch protein FliM JV59_35190 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JV59_35210 PF18269 T3SS EscN ATPase C-terminal domain JV59_35210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JV59_35220 PF14841 FliG middle domain JV59_35220 PF01706 FliG C-terminal domain JV59_35220 PF14842 FliG N-terminal domain JV59_35225 PF08345 Flagellar M-ring protein C-terminal JV59_35225 PF01514 Secretory protein of YscJ/FliF family JV59_35230 PF02049 Flagellar hook-basal body complex protein FliE JV59_35235 PF00158 Sigma-54 interaction domain JV59_35235 PF00072 Response regulator receiver domain JV59_35235 PF02954 Bacterial regulatory protein, Fis family JV59_35240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_35240 PF00512 His Kinase A (phospho-acceptor) domain JV59_35245 PF02954 Bacterial regulatory protein, Fis family JV59_35245 PF00072 Response regulator receiver domain JV59_35245 PF00158 Sigma-54 interaction domain JV59_35250 PF02561 Flagellar protein FliS JV59_35260 PF02465 Flagellar hook-associated protein 2 N-terminus JV59_35260 PF07195 Flagellar hook-associated protein 2 C-terminus JV59_35260 PF07196 Flagellin hook IN motif JV59_35265 PF03646 FlaG protein JV59_35270 PF07196 Flagellin hook IN motif JV59_35270 PF00700 Bacterial flagellin C-terminal helical region JV59_35270 PF00669 Bacterial flagellin N-terminal helical region JV59_35275 PF00700 Bacterial flagellin C-terminal helical region JV59_35275 PF07196 Flagellin hook IN motif JV59_35275 PF00669 Bacterial flagellin N-terminal helical region JV59_35280 PF00700 Bacterial flagellin C-terminal helical region JV59_35280 PF07196 Flagellin hook IN motif JV59_35280 PF00669 Bacterial flagellin N-terminal helical region JV59_35285 PF04261 Dyp-type peroxidase family JV59_35290 PF11143 Protein of unknown function (DUF2919) JV59_35295 PF03918 Cytochrome C biogenesis protein JV59_35300 PF08534 Redoxin JV59_35305 PF01578 Cytochrome C assembly protein JV59_35305 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JV59_35310 PF03916 Polysulphide reductase, NrfD JV59_35315 PF13247 4Fe-4S dicluster domain JV59_35315 PF00037 4Fe-4S binding domain JV59_35325 PF02335 Cytochrome c552 JV59_35350 PF03960 ArsC family JV59_35355 PF01546 Peptidase family M20/M25/M40 JV59_35355 PF07687 Peptidase dimerisation domain JV59_35365 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) JV59_35370 PF07348 Syd protein (SUKH-2) JV59_35375 PF14489 QueF-like protein JV59_35375 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JV59_35385 PF00990 Diguanylate cyclase, GGDEF domain JV59_35385 PF00072 Response regulator receiver domain JV59_35390 PF03641 Possible lysine decarboxylase JV59_35390 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JV59_35390 PF11892 Domain of unknown function (DUF3412) JV59_35395 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JV59_35395 PF01367 5'-3' exonuclease, C-terminal SAM fold JV59_35400 PF01223 DNA/RNA non-specific endonuclease JV59_35420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_35420 PF03466 LysR substrate binding domain JV59_35425 PF02926 THUMP domain JV59_35425 PF02568 Thiamine biosynthesis protein (ThiI) JV59_35430 PF00691 OmpA family JV59_35430 PF13677 Membrane MotB of proton-channel complex MotA/MotB JV59_35435 PF01618 MotA/TolQ/ExbB proton channel family JV59_35445 PF00348 Polyprenyl synthetase JV59_35450 PF02780 Transketolase, C-terminal domain JV59_35450 PF02779 Transketolase, pyrimidine binding domain JV59_35450 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JV59_35455 PF00849 RNA pseudouridylate synthase JV59_35460 PF04287 tRNA pseudouridine synthase C JV59_35480 PF00549 CoA-ligase JV59_35480 PF02629 CoA binding domain JV59_35485 PF00549 CoA-ligase JV59_35485 PF08442 ATP-grasp domain JV59_35490 PF02817 e3 binding domain JV59_35490 PF00364 Biotin-requiring enzyme JV59_35490 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JV59_35495 PF16870 2-oxoglutarate dehydrogenase C-terminal JV59_35495 PF16078 2-oxoglutarate dehydrogenase N-terminus JV59_35495 PF00676 Dehydrogenase E1 component JV59_35495 PF02779 Transketolase, pyrimidine binding domain JV59_35500 PF13085 2Fe-2S iron-sulfur cluster binding domain JV59_35505 PF02910 Fumarate reductase flavoprotein C-term JV59_35505 PF00890 FAD binding domain JV59_35510 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JV59_35515 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JV59_35520 PF00285 Citrate synthase, C-terminal domain JV59_35525 PF01784 NIF3 (NGG1p interacting factor 3) JV59_35535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JV59_35535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JV59_35535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JV59_35535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JV59_35540 PF17206 SeqA protein N-terminal domain JV59_35540 PF03925 SeqA protein C-terminal domain JV59_35545 PF12697 Alpha/beta hydrolase family JV59_35555 PF00258 Flavodoxin JV59_35565 PF01475 Ferric uptake regulator family JV59_35570 PF01180 Dihydroorotate dehydrogenase JV59_35580 PF00749 tRNA synthetases class I (E and Q), catalytic domain JV59_35580 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JV59_35585 PF00367 phosphotransferase system, EIIB JV59_35585 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JV59_35585 PF02378 Phosphotransferase system, EIIC JV59_35590 PF01979 Amidohydrolase family JV59_35595 PF01047 MarR family JV59_35595 PF00480 ROK family JV59_35600 PF00999 Sodium/hydrogen exchanger family JV59_35600 PF02254 TrkA-N domain JV59_35605 PF13537 Glutamine amidotransferase domain JV59_35605 PF00733 Asparagine synthase JV59_35610 PF00854 POT family JV59_35615 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JV59_35615 PF00728 Glycosyl hydrolase family 20, catalytic domain JV59_35615 PF03173 Putative carbohydrate binding domain JV59_35615 PF02838 Glycosyl hydrolase family 20, domain 2 JV59_35635 PF01713 Smr domain JV59_35640 PF00849 RNA pseudouridylate synthase JV59_35640 PF01479 S4 domain JV59_35650 PF02769 AIR synthase related protein, C-terminal domain JV59_35650 PF00586 AIR synthase related protein, N-terminal domain JV59_35655 PF00551 Formyl transferase JV59_35680 PF00497 Bacterial extracellular solute-binding proteins, family 3 JV59_35680 PF01464 Transglycosylase SLT domain JV59_35685 PF14437 MafB19-like deaminase JV59_35690 PF03806 AbgT putative transporter family JV59_35710 PF07963 Prokaryotic N-terminal methylation motif JV59_35715 PF00114 Pilin (bacterial filament) JV59_35715 PF07963 Prokaryotic N-terminal methylation motif JV59_35720 PF00684 DnaJ central domain JV59_35720 PF01556 DnaJ C terminal domain JV59_35720 PF00226 DnaJ domain JV59_35725 PF00012 Hsp70 protein JV59_35730 PF00375 Sodium:dicarboxylate symporter family JV59_35735 PF01025 GrpE JV59_35745 PF02463 RecF/RecN/SMC N terminal domain JV59_35750 PF04355 SmpA / OmlA family JV59_35755 PF03658 RnfH family Ubiquitin JV59_35760 PF03364 Polyketide cyclase / dehydrase and lipid transport JV59_35765 PF01668 SmpB protein JV59_35775 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JV59_35775 PF18766 SWI2/SNF2 ATPase JV59_35775 PF11867 Domain of unknown function (DUF3387) JV59_35795 PF12161 HsdM N-terminal domain JV59_35795 PF02384 N-6 DNA Methylase JV59_35810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_35810 PF08447 PAS fold JV59_35810 PF13426 PAS domain JV59_35815 PF00924 Mechanosensitive ion channel JV59_35820 PF02028 BCCT, betaine/carnitine/choline family transporter JV59_35840 PF01553 Acyltransferase JV59_35845 PF00072 Response regulator receiver domain JV59_35845 PF01584 CheW-like domain JV59_35865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_35865 PF03466 LysR substrate binding domain JV59_35870 PF01266 FAD dependent oxidoreductase JV59_35875 PF01235 Sodium:alanine symporter family JV59_35880 PF01184 GPR1/FUN34/yaaH family JV59_35885 PF06483 Chitinase C JV59_35885 PF00704 Glycosyl hydrolases family 18 JV59_35890 PF00958 GMP synthase C terminal domain JV59_35890 PF00117 Glutamine amidotransferase class-I JV59_35890 PF02540 NAD synthase JV59_35895 PF00571 CBS domain JV59_35895 PF00478 IMP dehydrogenase / GMP reductase domain JV59_35900 PF02601 Exonuclease VII, large subunit JV59_35900 PF13742 OB-fold nucleic acid binding domain JV59_35910 PF00990 Diguanylate cyclase, GGDEF domain JV59_35910 PF13185 GAF domain JV59_35920 PF01926 50S ribosome-binding GTPase JV59_35920 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JV59_35925 PF13360 PQQ-like domain JV59_35930 PF09976 Tetratricopeptide repeat-like domain JV59_35935 PF03129 Anticodon binding domain JV59_35935 PF13393 Histidyl-tRNA synthetase JV59_35940 PF04551 GcpE protein JV59_35945 PF13464 Domain of unknown function (DUF4115) JV59_35950 PF04055 Radical SAM superfamily JV59_35955 PF02657 Fe-S metabolism associated domain JV59_35960 PF00899 ThiF family JV59_35965 PF03562 MltA specific insert domain JV59_35965 PF06725 3D domain JV59_35975 PF00583 Acetyltransferase (GNAT) family JV59_35975 PF00696 Amino acid kinase family JV59_35985 PF13538 UvrD-like helicase C-terminal domain JV59_35990 PF12705 PD-(D/E)XK nuclease superfamily JV59_35990 PF00580 UvrD/REP helicase N-terminal domain JV59_35990 PF13361 UvrD-like helicase C-terminal domain JV59_35995 PF17946 RecC C-terminal domain JV59_36005 PF03466 LysR substrate binding domain JV59_36005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_36010 PF00873 AcrB/AcrD/AcrF family JV59_36015 PF00529 HlyD membrane-fusion protein of T1SS JV59_36015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JV59_36020 PF00440 Bacterial regulatory proteins, tetR family JV59_36025 PF07130 YebG protein JV59_36030 PF03932 CutC family JV59_36035 PF03466 LysR substrate binding domain JV59_36035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_36060 PF01895 PhoU domain JV59_36065 PF00528 Binding-protein-dependent transport system inner membrane component JV59_36070 PF00528 Binding-protein-dependent transport system inner membrane component JV59_36075 PF13089 Polyphosphate kinase N-terminal domain JV59_36075 PF17941 Polyphosphate kinase C-terminal domain 1 JV59_36075 PF13090 Polyphosphate kinase C-terminal domain 2 JV59_36075 PF02503 Polyphosphate kinase middle domain JV59_36080 PF02541 Ppx/GppA phosphatase family JV59_36085 PF12849 PBP superfamily domain JV59_36090 PF00512 His Kinase A (phospho-acceptor) domain JV59_36090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_36090 PF11808 Phosphate regulon sensor protein PhoR JV59_36090 PF00989 PAS fold JV59_36095 PF00072 Response regulator receiver domain JV59_36095 PF00486 Transcriptional regulatory protein, C terminal JV59_36100 PF04381 Putative exonuclease, RdgC JV59_36110 PF12838 4Fe-4S dicluster domain JV59_36115 PF03411 Penicillin-insensitive murein endopeptidase JV59_36130 PF02355 Protein export membrane protein JV59_36130 PF07549 SecD/SecF GG Motif JV59_36135 PF02355 Protein export membrane protein JV59_36135 PF13721 SecD export protein N-terminal TM region JV59_36135 PF07549 SecD/SecF GG Motif JV59_36140 PF02699 Preprotein translocase subunit JV59_36150 PF02547 Queuosine biosynthesis protein JV59_36155 PF00571 CBS domain JV59_36160 PF00463 Isocitrate lyase family JV59_36165 PF01274 Malate synthase JV59_36170 PF03466 LysR substrate binding domain JV59_36170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_36175 PF00578 AhpC/TSA family JV59_36175 PF10417 C-terminal domain of 1-Cys peroxiredoxin JV59_36180 PF14602 Hexapeptide repeat of succinyl-transferase JV59_36180 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle JV59_36190 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JV59_36200 PF12833 Helix-turn-helix domain JV59_36205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JV59_36205 PF02378 Phosphotransferase system, EIIC JV59_36205 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JV59_36215 PF01588 Putative tRNA binding domain JV59_36220 PF00356 Bacterial regulatory proteins, lacI family JV59_36225 PF01263 Aldose 1-epimerase JV59_36230 PF00288 GHMP kinases N terminal domain JV59_36230 PF08544 GHMP kinases C terminal JV59_36230 PF10509 Galactokinase galactose-binding signature JV59_36235 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JV59_36235 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JV59_36240 PF16363 GDP-mannose 4,6 dehydratase JV59_36245 PF00356 Bacterial regulatory proteins, lacI family JV59_36250 PF16353 Domain of unknown function(DUF4981) JV59_36250 PF02837 Glycosyl hydrolases family 2, sugar binding domain JV59_36250 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JV59_36250 PF00703 Glycosyl hydrolases family 2 JV59_36250 PF02929 Beta galactosidase small chain JV59_36255 PF04074 YhcH/YjgK/YiaL JV59_36260 PF13520 Amino acid permease JV59_36270 PF12706 Beta-lactamase superfamily domain JV59_36280 PF01204 Trehalase JV59_36295 PF11975 Family 4 glycosyl hydrolase C-terminal domain JV59_36295 PF02056 Family 4 glycosyl hydrolase JV59_36300 PF12833 Helix-turn-helix domain JV59_36335 PF00437 Type II/IV secretion system protein JV59_36350 PF00263 Bacterial type II and III secretion system protein JV59_36350 PF13629 Pilus formation protein N terminal region JV59_36350 PF04972 BON domain JV59_36380 PF12833 Helix-turn-helix domain JV59_36380 PF02805 Metal binding domain of Ada JV59_36390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_36390 PF03466 LysR substrate binding domain JV59_36400 PF03466 LysR substrate binding domain JV59_36400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_36405 PF00009 Elongation factor Tu GTP binding domain JV59_36405 PF03764 Elongation factor G, domain IV JV59_36405 PF14492 Elongation Factor G, domain II JV59_36405 PF03144 Elongation factor Tu domain 2 JV59_36405 PF00679 Elongation factor G C-terminus JV59_36410 PF00334 Nucleoside diphosphate kinase JV59_36415 PF00883 Cytosol aminopeptidase family, catalytic domain JV59_36415 PF12404 Peptidase JV59_36420 PF04384 Iron-sulphur cluster assembly JV59_36425 PF00111 2Fe-2S iron-sulfur cluster binding domain JV59_36430 PF00012 Hsp70 protein JV59_36435 PF07743 HSCB C-terminal oligomerisation domain JV59_36435 PF00226 DnaJ domain JV59_36440 PF01521 Iron-sulphur cluster biosynthesis JV59_36445 PF01592 NifU-like N terminal domain JV59_36450 PF00266 Aminotransferase class-V JV59_36455 PF02082 Transcriptional regulator JV59_36460 PF00588 SpoU rRNA Methylase family JV59_36465 PF00459 Inositol monophosphatase family JV59_36505 PF07724 AAA domain (Cdc48 subfamily) JV59_36505 PF17871 AAA lid domain JV59_36505 PF00004 ATPase family associated with various cellular activities (AAA) JV59_36505 PF02861 Clp amino terminal domain, pathogenicity island component JV59_36505 PF10431 C-terminal, D2-small domain, of ClpB protein JV59_36515 PF00849 RNA pseudouridylate synthase JV59_36515 PF01479 S4 domain JV59_36520 PF13525 Outer membrane lipoprotein JV59_36525 PF01464 Transglycosylase SLT domain JV59_36530 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JV59_36535 PF00800 Prephenate dehydratase JV59_36535 PF01817 Chorismate mutase type II JV59_36540 PF13416 Bacterial extracellular solute-binding protein JV59_36545 PF00990 Diguanylate cyclase, GGDEF domain JV59_36545 PF00563 EAL domain JV59_36550 PF01931 Protein of unknown function DUF84 JV59_36555 PF01371 Trp repressor protein JV59_36560 PF14718 Soluble lytic murein transglycosylase L domain JV59_36560 PF01464 Transglycosylase SLT domain JV59_36565 PF12848 ABC transporter JV59_36565 PF00005 ABC transporter JV59_36570 PF07238 PilZ domain JV59_36575 PF04225 Opacity-associated protein A LysM-like domain JV59_36575 PF01551 Peptidase family M23 JV59_36580 PF02153 Prephenate dehydrogenase JV59_36580 PF01817 Chorismate mutase type II JV59_36590 PF07694 5TMR of 5TMR-LYT JV59_36590 PF06580 Histidine kinase JV59_36595 PF04397 LytTr DNA-binding domain JV59_36595 PF00072 Response regulator receiver domain JV59_36600 PF00933 Glycosyl hydrolase family 3 N terminal domain JV59_36605 PF01418 Helix-turn-helix domain, rpiR family JV59_36605 PF01380 SIS domain JV59_36615 PF01869 BadF/BadG/BcrA/BcrD ATPase family JV59_36620 PF03702 Anhydro-N-acetylmuramic acid kinase JV59_36625 PF13580 SIS domain JV59_36635 PF02554 Carbon starvation protein CstA JV59_36640 PF02401 LytB protein JV59_36645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JV59_36650 PF01252 Signal peptidase (SPase) II JV59_36655 PF00133 tRNA synthetases class I (I, L, M and V) JV59_36655 PF08264 Anticodon-binding domain of tRNA JV59_36655 PF06827 Zinc finger found in FPG and IleRS JV59_36660 PF06574 FAD synthetase JV59_36660 PF01687 Riboflavin kinase JV59_36665 PF03023 Lipid II flippase MurJ JV59_36670 PF01649 Ribosomal protein S20 JV59_36675 PF01022 Bacterial regulatory protein, arsR family JV59_36680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_36680 PF03466 LysR substrate binding domain JV59_36690 PF02690 Na+/Pi-cotransporter JV59_36695 PF00303 Thymidylate synthase JV59_36705 PF01925 Sulfite exporter TauE/SafE JV59_36710 PF02896 PEP-utilising enzyme, TIM barrel domain JV59_36710 PF00391 PEP-utilising enzyme, mobile domain JV59_36710 PF05524 PEP-utilising enzyme, N-terminal JV59_36710 PF01590 GAF domain JV59_36720 PF02976 DNA mismatch repair enzyme MutH JV59_36730 PF00248 Aldo/keto reductase family JV59_36740 PF00072 Response regulator receiver domain JV59_36740 PF02954 Bacterial regulatory protein, Fis family JV59_36740 PF00158 Sigma-54 interaction domain JV59_36745 PF01554 MatE JV59_36750 PF01047 MarR family JV59_36755 PF07719 Tetratricopeptide repeat JV59_36755 PF13181 Tetratricopeptide repeat JV59_36760 PF00575 S1 RNA binding domain JV59_36760 PF03725 3' exoribonuclease family, domain 2 JV59_36760 PF01138 3' exoribonuclease family, domain 1 JV59_36760 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JV59_36760 PF00013 KH domain JV59_36765 PF00312 Ribosomal protein S15 JV59_36770 PF01048 Phosphorylase superfamily JV59_36775 PF03186 CobD/Cbib protein JV59_36780 PF01497 Periplasmic binding protein JV59_36785 PF03458 UPF0126 domain JV59_36790 PF14821 Threonine synthase N terminus JV59_36790 PF00291 Pyridoxal-phosphate dependent enzyme JV59_36795 PF00288 GHMP kinases N terminal domain JV59_36795 PF08544 GHMP kinases C terminal JV59_36800 PF00696 Amino acid kinase family JV59_36800 PF03447 Homoserine dehydrogenase, NAD binding domain JV59_36800 PF00742 Homoserine dehydrogenase JV59_36800 PF01842 ACT domain JV59_36800 PF13840 ACT domain JV59_36810 PF03737 Aldolase/RraA JV59_36820 PF00486 Transcriptional regulatory protein, C terminal JV59_36820 PF00072 Response regulator receiver domain JV59_36830 PF03710 Glutamate-ammonia ligase adenylyltransferase JV59_36830 PF08335 GlnD PII-uridylyltransferase JV59_36835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JV59_36835 PF00672 HAMP domain JV59_36840 PF07885 Ion channel JV59_36840 PF00027 Cyclic nucleotide-binding domain JV59_36845 PF01928 CYTH domain JV59_36850 PF01865 Protein of unknown function DUF47 JV59_36855 PF01384 Phosphate transporter family JV59_36860 PF08239 Bacterial SH3 domain JV59_36865 PF16537 Type II secretion system protein B JV59_36870 PF13401 AAA domain JV59_36870 PF01471 Putative peptidoglycan binding domain JV59_36875 PF12627 Probable RNA and SrmB- binding site of polymerase A JV59_36875 PF01743 Poly A polymerase head domain JV59_36875 PF01966 HD domain JV59_36880 PF00113 Enolase, C-terminal TIM barrel domain JV59_36880 PF03952 Enolase, N-terminal domain JV59_36885 PF03952 Enolase, N-terminal domain JV59_36885 PF00113 Enolase, C-terminal TIM barrel domain JV59_36890 PF03952 Enolase, N-terminal domain JV59_36890 PF00113 Enolase, C-terminal TIM barrel domain JV59_36895 PF03952 Enolase, N-terminal domain JV59_36895 PF00113 Enolase, C-terminal TIM barrel domain JV59_36900 PF00117 Glutamine amidotransferase class-I JV59_36900 PF06418 CTP synthase N-terminus JV59_36905 PF03819 MazG nucleotide pyrophosphohydrolase domain JV59_36910 PF04607 Region found in RelA / SpoT proteins JV59_36910 PF13291 ACT domain JV59_36910 PF02824 TGS domain JV59_36915 PF01938 TRAM domain JV59_36915 PF05958 tRNA (Uracil-5-)-methyltransferase JV59_36920 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JV59_36920 PF00072 Response regulator receiver domain JV59_36920 PF01627 Hpt domain JV59_36920 PF00512 His Kinase A (phospho-acceptor) domain JV59_36920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_36920 PF00672 HAMP domain JV59_36925 PF01648 4'-phosphopantetheinyl transferase superfamily JV59_36930 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JV59_36935 PF11967 Recombination protein O N terminal JV59_36935 PF02565 Recombination protein O C terminal JV59_36940 PF01926 50S ribosome-binding GTPase JV59_36940 PF07650 KH domain JV59_36950 PF10502 Signal peptidase, peptidase S26 JV59_36955 PF06421 GTP-binding protein LepA C-terminus JV59_36955 PF03144 Elongation factor Tu domain 2 JV59_36955 PF00679 Elongation factor G C-terminus JV59_36955 PF00009 Elongation factor Tu GTP binding domain JV59_36965 PF17188 MucB/RseB C-terminal domain JV59_36965 PF03888 MucB/RseB N-terminal domain JV59_36970 PF03873 Anti sigma-E protein RseA, C-terminal domain JV59_36970 PF03872 Anti sigma-E protein RseA, N-terminal domain JV59_36975 PF08281 Sigma-70, region 4 JV59_36975 PF04542 Sigma-70 region 2 JV59_36980 PF02910 Fumarate reductase flavoprotein C-term JV59_36980 PF00890 FAD binding domain JV59_36990 PF03937 Flavinator of succinate dehydrogenase JV59_37010 PF01494 FAD binding domain JV59_37015 PF01494 FAD binding domain JV59_37025 PF05164 Cell division protein ZapA JV59_37030 PF01812 5-formyltetrahydrofolate cyclo-ligase family JV59_37035 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JV59_37040 PF01842 ACT domain JV59_37040 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JV59_37040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JV59_37045 PF07690 Major Facilitator Superfamily JV59_37050 PF03009 Glycerophosphoryl diester phosphodiesterase family JV59_37055 PF10369 Small subunit of acetolactate synthase JV59_37060 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JV59_37060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JV59_37060 PF00205 Thiamine pyrophosphate enzyme, central domain JV59_37065 PF00501 AMP-binding enzyme JV59_37070 PF03466 LysR substrate binding domain JV59_37070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_37090 PF00682 HMGL-like JV59_37090 PF08502 LeuA allosteric (dimerisation) domain JV59_37095 PF00180 Isocitrate/isopropylmalate dehydrogenase JV59_37100 PF00330 Aconitase family (aconitate hydratase) JV59_37105 PF00694 Aconitase C-terminal domain JV59_37155 PF00072 Response regulator receiver domain JV59_37175 PF02664 S-Ribosylhomocysteinase (LuxS) JV59_37185 PF04262 Glutamate-cysteine ligase JV59_37190 PF00675 Insulinase (Peptidase family M16) JV59_37190 PF05193 Peptidase M16 inactive domain JV59_37195 PF09335 SNARE associated Golgi protein JV59_37200 PF16884 N-terminal domain of oxidoreductase JV59_37200 PF00107 Zinc-binding dehydrogenase JV59_37205 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit JV59_37210 PF00364 Biotin-requiring enzyme JV59_37210 PF02436 Conserved carboxylase domain JV59_37210 PF00682 HMGL-like JV59_37215 PF04277 Oxaloacetate decarboxylase, gamma chain JV59_37250 PF02599 Global regulator protein family JV59_37255 PF13840 ACT domain JV59_37255 PF01842 ACT domain JV59_37255 PF00696 Amino acid kinase family JV59_37260 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JV59_37260 PF02272 DHHA1 domain JV59_37260 PF01411 tRNA synthetases class II (A) JV59_37265 PF02631 RecX family JV59_37270 PF00154 recA bacterial DNA recombination protein JV59_37275 PF02464 Competence-damaged protein JV59_37280 PF00488 MutS domain V JV59_37280 PF05190 MutS family domain IV JV59_37280 PF05188 MutS domain II JV59_37280 PF05192 MutS domain III JV59_37280 PF01624 MutS domain I JV59_37285 PF03739 Lipopolysaccharide export system permease LptF/LptG JV59_37290 PF03739 Lipopolysaccharide export system permease LptF/LptG JV59_37295 PF00883 Cytosol aminopeptidase family, catalytic domain JV59_37295 PF02789 Cytosol aminopeptidase family, N-terminal domain JV59_37315 PF05987 Bacterial protein of unknown function (DUF898) JV59_37325 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JV59_37325 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JV59_37330 PF00849 RNA pseudouridylate synthase JV59_37340 PF18337 RapA N-terminal Tudor like domain JV59_37340 PF18339 RapA N-terminal Tudor like domain 1 JV59_37340 PF00176 SNF2 family N-terminal domain JV59_37340 PF00271 Helicase conserved C-terminal domain JV59_37340 PF12137 RNA polymerase recycling family C-terminal JV59_37345 PF02562 PhoH-like protein JV59_37345 PF13638 PIN domain JV59_37350 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JV59_37350 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JV59_37355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JV59_37355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JV59_37360 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JV59_37360 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JV59_37365 PF01042 Endoribonuclease L-PSP JV59_37375 PF00056 lactate/malate dehydrogenase, NAD binding domain JV59_37375 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JV59_37385 PF16868 NMT1-like family JV59_37395 PF00582 Universal stress protein family JV59_37410 PF06877 Regulator of ribonuclease activity B JV59_37420 PF01553 Acyltransferase JV59_37425 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JV59_37430 PF01722 BolA-like protein JV59_37440 PF05494 MlaC protein JV59_37445 PF02470 MlaD protein JV59_37450 PF02405 Permease MlaE JV59_37455 PF00005 ABC transporter JV59_37460 PF01699 Sodium/calcium exchanger protein JV59_37480 PF03968 OstA-like protein JV59_37485 PF00005 ABC transporter JV59_37485 PF12399 Branched-chain amino acid ATP-binding cassette transporter JV59_37490 PF04552 Sigma-54, DNA binding domain JV59_37490 PF04963 Sigma-54 factor, core binding domain JV59_37490 PF00309 Sigma-54 factor, Activator interacting domain (AID) JV59_37495 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JV59_37500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JV59_37505 PF03668 P-loop ATPase protein family JV59_37510 PF00381 PTS HPr component phosphorylation site JV59_37515 PF00571 CBS domain JV59_37515 PF03448 MgtE intracellular N domain JV59_37515 PF01769 Divalent cation transporter JV59_37520 PF00999 Sodium/hydrogen exchanger family JV59_37555 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JV59_37555 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JV59_37560 PF00667 FAD binding domain JV59_37560 PF00258 Flavodoxin JV59_37560 PF00175 Oxidoreductase NAD-binding domain JV59_37580 PF01207 Dihydrouridine synthase (Dus) JV59_37705 PF00072 Response regulator receiver domain JV59_37710 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JV59_37710 PF01627 Hpt domain JV59_37710 PF00672 HAMP domain JV59_37710 PF00072 Response regulator receiver domain JV59_37710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_37710 PF00512 His Kinase A (phospho-acceptor) domain JV59_37715 PF01475 Ferric uptake regulator family JV59_37730 PF02080 TrkA-C domain JV59_37730 PF03600 Citrate transporter JV59_37735 PF00009 Elongation factor Tu GTP binding domain JV59_37740 PF01507 Phosphoadenosine phosphosulfate reductase family JV59_37745 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JV59_37745 PF14824 Sirohaem biosynthesis protein central JV59_37745 PF10414 Sirohaem synthase dimerisation region JV59_37750 PF02872 5'-nucleotidase, C-terminal domain JV59_37750 PF00149 Calcineurin-like phosphoesterase JV59_37760 PF13673 Acetyltransferase (GNAT) domain JV59_37785 PF01196 Ribosomal protein L17 JV59_37795 PF00163 Ribosomal protein S4/S9 N-terminal domain JV59_37795 PF01479 S4 domain JV59_37800 PF00411 Ribosomal protein S11 JV59_37805 PF00416 Ribosomal protein S13/S18 JV59_37810 PF00444 Ribosomal protein L36 JV59_37815 PF00344 SecY translocase JV59_37825 PF00327 Ribosomal protein L30p/L7e JV59_37830 PF00333 Ribosomal protein S5, N-terminal domain JV59_37830 PF03719 Ribosomal protein S5, C-terminal domain JV59_37835 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JV59_37840 PF00347 Ribosomal protein L6 JV59_37845 PF00410 Ribosomal protein S8 JV59_37850 PF00253 Ribosomal protein S14p/S29e JV59_37855 PF00281 Ribosomal protein L5 JV59_37855 PF00673 ribosomal L5P family C-terminus JV59_37860 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JV59_37860 PF00467 KOW motif JV59_37865 PF00366 Ribosomal protein S17 JV59_37870 PF00831 Ribosomal L29 protein JV59_37875 PF00252 Ribosomal protein L16p/L10e JV59_37880 PF07650 KH domain JV59_37880 PF00189 Ribosomal protein S3, C-terminal domain JV59_37885 PF00237 Ribosomal protein L22p/L17e JV59_37890 PF00203 Ribosomal protein S19 JV59_37895 PF03947 Ribosomal Proteins L2, C-terminal domain JV59_37895 PF00181 Ribosomal Proteins L2, RNA binding domain JV59_37900 PF00276 Ribosomal protein L23 JV59_37905 PF00573 Ribosomal protein L4/L1 family JV59_37915 PF00338 Ribosomal protein S10p/S20e JV59_37920 PF08032 RNA 2'-O ribose methyltransferase substrate binding JV59_37920 PF00588 SpoU rRNA Methylase family JV59_37925 PF00575 S1 RNA binding domain JV59_37925 PF08206 Ribonuclease B OB domain JV59_37925 PF08461 Ribonuclease R winged-helix domain JV59_37925 PF17876 Cold shock domain JV59_37925 PF00773 RNB domain JV59_37930 PF01979 Amidohydrolase family JV59_37935 PF08238 Sel1 repeat JV59_37940 PF00709 Adenylosuccinate synthetase JV59_37950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JV59_37960 PF00999 Sodium/hydrogen exchanger family JV59_37960 PF02254 TrkA-N domain JV59_37965 PF02525 Flavodoxin-like fold JV59_37970 PF00005 ABC transporter JV59_37970 PF12848 ABC transporter JV59_37980 PF00561 alpha/beta hydrolase fold JV59_37985 PF06794 Uncharacterised protein family (UPF0270) JV59_37990 PF00485 Phosphoribulokinase / Uridine kinase family JV59_37995 PF00027 Cyclic nucleotide-binding domain JV59_37995 PF13545 Crp-like helix-turn-helix domain JV59_38010 PF04958 Arginine N-succinyltransferase beta subunit JV59_38015 PF00202 Aminotransferase class-III JV59_38020 PF00117 Glutamine amidotransferase class-I JV59_38075 PF04186 FxsA cytoplasmic membrane protein JV59_38080 PF10415 Fumarase C C-terminus JV59_38080 PF00206 Lyase JV59_38085 PF03605 Anaerobic c4-dicarboxylate membrane transporter JV59_38090 PF03606 C4-dicarboxylate anaerobic carrier JV59_38100 PF00696 Amino acid kinase family JV59_38105 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JV59_38105 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JV59_38110 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JV59_38110 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JV59_38115 PF02863 Arginine repressor, C-terminal domain JV59_38115 PF01316 Arginine repressor, DNA binding domain JV59_38120 PF11412 Disulphide bond corrector protein DsbC JV59_38120 PF02683 Cytochrome C biogenesis protein transmembrane region JV59_38125 PF00196 Bacterial regulatory proteins, luxR family JV59_38125 PF00072 Response regulator receiver domain JV59_38130 PF01914 MarC family integral membrane protein JV59_38140 PF00474 Sodium:solute symporter family JV59_38150 PF00072 Response regulator receiver domain JV59_38150 PF09308 LuxQ, periplasmic JV59_38150 PF00512 His Kinase A (phospho-acceptor) domain JV59_38150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_38155 PF12832 MFS_1 like family JV59_38170 PF01220 Dehydroquinase class II JV59_38175 PF00364 Biotin-requiring enzyme JV59_38180 PF02785 Biotin carboxylase C-terminal domain JV59_38180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JV59_38180 PF00289 Biotin carboxylase, N-terminal domain JV59_38190 PF01207 Dihydrouridine synthase (Dus) JV59_38195 PF02954 Bacterial regulatory protein, Fis family JV59_38200 PF05230 MASE2 domain JV59_38200 PF00990 Diguanylate cyclase, GGDEF domain JV59_38205 PF13411 MerR HTH family regulatory protein JV59_38210 PF02142 MGS-like domain JV59_38210 PF01808 AICARFT/IMPCHase bienzyme JV59_38215 PF02843 Phosphoribosylglycinamide synthetase, C domain JV59_38215 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JV59_38215 PF02844 Phosphoribosylglycinamide synthetase, N domain JV59_38225 PF00216 Bacterial DNA-binding protein JV59_38230 PF04222 Protein of unknown function (DUF416) JV59_38235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JV59_38240 PF03167 Uracil DNA glycosylase superfamily JV59_38245 PF00311 Phosphoenolpyruvate carboxylase JV59_38250 PF10400 Virulence activator alpha C-term JV59_38250 PF03551 Transcriptional regulator PadR-like family JV59_38255 PF06426 Serine acetyltransferase, N-terminal JV59_38255 PF00132 Bacterial transferase hexapeptide (six repeats) JV59_38260 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JV59_38260 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JV59_38265 PF02556 Preprotein translocase subunit SecB JV59_38270 PF00581 Rhodanese-like domain JV59_38295 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF JV59_38305 PF06082 Exopolysaccharide biosynthesis protein YbjH JV59_38310 PF00152 tRNA synthetases class II (D, K and N) JV59_38315 PF00890 FAD binding domain JV59_38315 PF02910 Fumarate reductase flavoprotein C-term JV59_38320 PF13183 4Fe-4S dicluster domain JV59_38320 PF13085 2Fe-2S iron-sulfur cluster binding domain JV59_38325 PF02300 Fumarate reductase subunit C JV59_38330 PF02313 Fumarate reductase subunit D JV59_38340 PF07724 AAA domain (Cdc48 subfamily) JV59_38340 PF00004 ATPase family associated with various cellular activities (AAA) JV59_38350 PF05036 Sporulation related domain JV59_38355 PF00356 Bacterial regulatory proteins, lacI family JV59_38360 PF18074 Primosomal protein N C-terminal domain JV59_38360 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JV59_38360 PF00270 DEAD/DEAH box helicase JV59_38360 PF00271 Helicase conserved C-terminal domain JV59_38360 PF17764 3′ DNA-binding domain (3′BD) JV59_38365 PF01197 Ribosomal protein L31 JV59_38370 PF00390 Malic enzyme, N-terminal domain JV59_38370 PF03949 Malic enzyme, NAD binding domain JV59_38380 PF01053 Cys/Met metabolism PLP-dependent enzyme JV59_38385 PF03447 Homoserine dehydrogenase, NAD binding domain JV59_38385 PF00742 Homoserine dehydrogenase JV59_38385 PF00696 Amino acid kinase family JV59_38390 PF02219 Methylenetetrahydrofolate reductase JV59_38400 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JV59_38415 PF00118 TCP-1/cpn60 chaperonin family JV59_38420 PF00166 Chaperonin 10 Kd subunit JV59_38440 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JV59_38440 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JV59_38440 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JV59_38440 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JV59_38450 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JV59_38450 PF01565 FAD binding domain JV59_38455 PF08279 HTH domain JV59_38455 PF02237 Biotin protein ligase C terminal domain JV59_38455 PF03099 Biotin/lipoate A/B protein ligase family JV59_38460 PF13091 PLD-like domain JV59_38470 PF00534 Glycosyl transferases group 1 JV59_38490 PF13649 Methyltransferase domain JV59_38510 PF04199 Putative cyclase JV59_38520 PF13193 AMP-binding enzyme C-terminal domain JV59_38520 PF00501 AMP-binding enzyme JV59_38525 PF07836 DmpG-like communication domain JV59_38525 PF00682 HMGL-like JV59_38530 PF03102 NeuB family JV59_38530 PF08666 SAF domain JV59_38540 PF00202 Aminotransferase class-III JV59_38545 PF02348 Cytidylyltransferase JV59_38555 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JV59_38560 PF02719 Polysaccharide biosynthesis protein JV59_38565 PF01370 NAD dependent epimerase/dehydratase family JV59_38570 PF13439 Glycosyltransferase Family 4 JV59_38570 PF00534 Glycosyl transferases group 1 JV59_38585 PF12464 Maltose acetyltransferase JV59_38585 PF00132 Bacterial transferase hexapeptide (six repeats) JV59_38585 PF14602 Hexapeptide repeat of succinyl-transferase JV59_38600 PF04488 Glycosyltransferase sugar-binding region containing DXD motif JV59_38605 PF00534 Glycosyl transferases group 1 JV59_38605 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JV59_38625 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JV59_38630 PF00535 Glycosyl transferase family 2 JV59_38640 PF01467 Cytidylyltransferase-like JV59_38645 PF06827 Zinc finger found in FPG and IleRS JV59_38645 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JV59_38645 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JV59_38655 PF00471 Ribosomal protein L33 JV59_38665 PF04002 RadC-like JAB domain JV59_38670 PF04127 DNA / pantothenate metabolism flavoprotein JV59_38670 PF02441 Flavoprotein JV59_38675 PF00440 Bacterial regulatory proteins, tetR family JV59_38680 PF03279 Bacterial lipid A biosynthesis acyltransferase JV59_38685 PF03279 Bacterial lipid A biosynthesis acyltransferase JV59_38690 PF00156 Phosphoribosyl transferase domain JV59_38695 PF03725 3' exoribonuclease family, domain 2 JV59_38695 PF01138 3' exoribonuclease family, domain 1 JV59_38700 PF08340 Domain of unknown function (DUF1732) JV59_38700 PF03755 YicC-like family, N-terminal region JV59_38720 PF05594 Haemagluttinin repeat JV59_38720 PF04829 Pre-toxin domain with VENN motif JV59_38720 PF05860 haemagglutination activity domain JV59_38720 PF13332 Hemagglutinin repeat JV59_38720 PF15526 Novel toxin 21 JV59_38725 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB JV59_38725 PF08479 POTRA domain, ShlB-type JV59_38725 PF17287 POTRA domain JV59_38730 PF00860 Permease family JV59_38740 PF02472 Biopolymer transport protein ExbD/TolR JV59_38745 PF01618 MotA/TolQ/ExbB proton channel family JV59_38760 PF07715 TonB-dependent Receptor Plug Domain JV59_38760 PF00593 TonB dependent receptor JV59_38770 PF04542 Sigma-70 region 2 JV59_38770 PF08281 Sigma-70, region 4 JV59_38775 PF00625 Guanylate kinase JV59_38780 PF01192 RNA polymerase Rpb6 JV59_38785 PF02824 TGS domain JV59_38785 PF04607 Region found in RelA / SpoT proteins JV59_38785 PF13291 ACT domain JV59_38790 PF12105 SpoU, rRNA methylase, C-terminal JV59_38790 PF00588 SpoU rRNA Methylase family JV59_38795 PF17191 RecG wedge domain JV59_38795 PF00271 Helicase conserved C-terminal domain JV59_38795 PF00270 DEAD/DEAH box helicase JV59_38800 PF00459 Inositol monophosphatase family JV59_38805 PF00293 NUDIX domain JV59_38810 PF01106 NifU-like domain JV59_38810 PF01521 Iron-sulphur cluster biosynthesis JV59_38815 PF00156 Phosphoribosyl transferase domain JV59_38820 PF00561 alpha/beta hydrolase fold JV59_38830 PF17674 HHH domain JV59_38830 PF00575 S1 RNA binding domain JV59_38830 PF09371 Tex-like protein N-terminal domain JV59_38830 PF16921 Tex protein YqgF-like domain JV59_38840 PF03449 Transcription elongation factor, N-terminal JV59_38840 PF01272 Transcription elongation factor, GreA/GreB, C-term JV59_38845 PF00072 Response regulator receiver domain JV59_38845 PF00486 Transcriptional regulatory protein, C terminal JV59_38850 PF00672 HAMP domain JV59_38850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_38850 PF00512 His Kinase A (phospho-acceptor) domain JV59_38860 PF04612 Type II secretion system (T2SS), protein M JV59_38865 PF12693 GspL periplasmic domain JV59_38865 PF05134 Type II secretion system (T2SS), protein L JV59_38870 PF03934 Type II secretion system (T2SS), protein K JV59_38875 PF11612 Type II secretion system (T2SS), protein J JV59_38875 PF07963 Prokaryotic N-terminal methylation motif JV59_38880 PF02501 Type II secretion system (T2SS), protein I JV59_38880 PF07963 Prokaryotic N-terminal methylation motif JV59_38885 PF12019 Type II transport protein GspH JV59_38890 PF07963 Prokaryotic N-terminal methylation motif JV59_38890 PF08334 Type II secretion system (T2SS), protein G JV59_38895 PF00482 Type II secretion system (T2SS), protein F JV59_38900 PF00437 Type II/IV secretion system protein JV59_38905 PF03958 Bacterial type II/III secretion system short domain JV59_38905 PF00263 Bacterial type II and III secretion system protein JV59_38910 PF11356 Type II secretion system protein C JV59_38915 PF01479 S4 domain JV59_38920 PF01430 Hsp33 protein JV59_38925 PF01293 Phosphoenolpyruvate carboxykinase JV59_38935 PF00583 Acetyltransferase (GNAT) family JV59_38935 PF09500 Putative thioesterase (yiiD_Cterm) JV59_38940 PF02580 D-Tyr-tRNA(Tyr) deacylase JV59_38960 PF00120 Glutamine synthetase, catalytic domain JV59_38960 PF03951 Glutamine synthetase, beta-Grasp domain JV59_38965 PF00989 PAS fold JV59_38965 PF00512 His Kinase A (phospho-acceptor) domain JV59_38965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_38970 PF02954 Bacterial regulatory protein, Fis family JV59_38970 PF00072 Response regulator receiver domain JV59_38970 PF00158 Sigma-54 interaction domain JV59_38975 PF03707 Bacterial signalling protein N terminal repeat JV59_38975 PF00990 Diguanylate cyclase, GGDEF domain JV59_38975 PF13188 PAS domain JV59_38975 PF00563 EAL domain JV59_38980 PF00962 Adenosine/AMP deaminase JV59_39020 PF00132 Bacterial transferase hexapeptide (six repeats) JV59_39025 PF07369 Protein of unknown function (DUF1488) JV59_39030 PF08501 Shikimate dehydrogenase substrate binding domain JV59_39030 PF01488 Shikimate / quinate 5-dehydrogenase JV59_39030 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JV59_39035 PF01218 Coproporphyrinogen III oxidase JV59_39040 PF01300 Telomere recombination JV59_39045 PF00731 AIR carboxylase JV59_39050 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JV59_39050 PF02222 ATP-grasp domain JV59_39055 PF01396 Topoisomerase DNA binding C4 zinc finger JV59_39060 PF04361 Protein of unknown function (DUF494) JV59_39065 PF02481 DNA recombination-mediator protein A JV59_39065 PF17782 DprA winged helix domain JV59_39070 PF01327 Polypeptide deformylase JV59_39075 PF02911 Formyl transferase, C-terminal domain JV59_39075 PF00551 Formyl transferase JV59_39080 PF01029 NusB family JV59_39080 PF01189 16S rRNA methyltransferase RsmB/F JV59_39085 PF02080 TrkA-C domain JV59_39085 PF02254 TrkA-N domain JV59_39090 PF02386 Cation transport protein JV59_39100 PF03006 Haemolysin-III related JV59_39105 PF07070 SpoOM protein JV59_39115 PF06288 Protein of unknown function (DUF1040) JV59_39120 PF13746 4Fe-4S dicluster domain JV59_39120 PF12801 4Fe-4S binding domain JV59_39120 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JV59_39125 PF01636 Phosphotransferase enzyme family JV59_39130 PF01323 DSBA-like thioredoxin domain JV59_39135 PF01553 Acyltransferase JV59_39145 PF13335 Magnesium chelatase, subunit ChlI C-terminal JV59_39145 PF01078 Magnesium chelatase, subunit ChlI JV59_39150 PF00205 Thiamine pyrophosphate enzyme, central domain JV59_39150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JV59_39150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JV59_39160 PF01063 Amino-transferase class IV JV59_39165 PF00920 Dehydratase family JV59_39170 PF00291 Pyridoxal-phosphate dependent enzyme JV59_39170 PF00585 C-terminal regulatory domain of Threonine dehydratase JV59_39175 PF08240 Alcohol dehydrogenase GroES-like domain JV59_39175 PF00107 Zinc-binding dehydrogenase JV59_39180 PF03466 LysR substrate binding domain JV59_39180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_39190 PF01206 Sulfurtransferase TusA JV59_39200 PF01169 Uncharacterized protein family UPF0016 JV59_39210 PF02092 Glycyl-tRNA synthetase beta subunit JV59_39210 PF05746 DALR anticodon binding domain JV59_39215 PF00155 Aminotransferase class I and II JV59_39220 PF00011 Hsp20/alpha crystallin family JV59_39225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JV59_39225 PF18053 DNA gyrase B subunit insert domain JV59_39225 PF00986 DNA gyrase B subunit, carboxyl terminus JV59_39225 PF01751 Toprim domain JV59_39225 PF00204 DNA gyrase B JV59_39230 PF02463 RecF/RecN/SMC N terminal domain JV59_39235 PF02768 DNA polymerase III beta subunit, C-terminal domain JV59_39235 PF02767 DNA polymerase III beta subunit, central domain JV59_39235 PF00712 DNA polymerase III beta subunit, N-terminal domain JV59_39240 PF11638 DnaA N-terminal domain JV59_39240 PF00308 Bacterial dnaA protein JV59_39240 PF08299 Bacterial dnaA protein helix-turn-helix JV59_39245 PF00497 Bacterial extracellular solute-binding proteins, family 3 JV59_39250 PF00528 Binding-protein-dependent transport system inner membrane component JV59_39255 PF00005 ABC transporter JV59_39265 PF00825 Ribonuclease P JV59_39270 PF02096 60Kd inner membrane protein JV59_39270 PF14849 YidC periplasmic domain JV59_39275 PF01926 50S ribosome-binding GTPase JV59_39275 PF10396 GTP-binding protein TrmE N-terminus JV59_39275 PF12631 MnmE helical domain JV59_39280 PF00258 Flavodoxin JV59_39285 PF01134 Glucose inhibited division protein A JV59_39285 PF13932 GidA associated domain JV59_39295 PF13614 AAA domain JV59_39300 PF17762 HTH domain found in ParB protein JV59_39300 PF02195 ParB-like nuclease domain JV59_39305 PF03899 ATP synthase I chain JV59_39310 PF00119 ATP synthase A chain JV59_39315 PF00137 ATP synthase subunit C JV59_39320 PF00430 ATP synthase B/B' CF(0) JV59_39325 PF00213 ATP synthase delta (OSCP) subunit JV59_39330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JV59_39330 PF00306 ATP synthase alpha/beta chain, C terminal domain JV59_39330 PF02874 ATP synthase alpha/beta family, beta-barrel domain JV59_39335 PF00231 ATP synthase JV59_39340 PF02874 ATP synthase alpha/beta family, beta-barrel domain JV59_39340 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JV59_39345 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JV59_39345 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JV59_39350 PF12804 MobA-like NTP transferase domain JV59_39350 PF00132 Bacterial transferase hexapeptide (six repeats) JV59_39355 PF00528 Binding-protein-dependent transport system inner membrane component JV59_39360 PF00497 Bacterial extracellular solute-binding proteins, family 3 JV59_39365 PF07690 Major Facilitator Superfamily JV59_39370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_39370 PF03466 LysR substrate binding domain JV59_39375 PF00990 Diguanylate cyclase, GGDEF domain JV59_39380 PF00108 Thiolase, N-terminal domain JV59_39380 PF02803 Thiolase, C-terminal domain JV59_39385 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JV59_39385 PF00378 Enoyl-CoA hydratase/isomerase JV59_39385 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JV59_39390 PF01205 Uncharacterized protein family UPF0029 JV59_39390 PF09186 Domain of unknown function (DUF1949) JV59_39395 PF02386 Cation transport protein JV59_39400 PF12724 Flavodoxin domain JV59_39450 PF00394 Multicopper oxidase JV59_39450 PF07731 Multicopper oxidase JV59_39450 PF07732 Multicopper oxidase JV59_39455 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JV59_39460 PF13667 ThiC-associated domain JV59_39460 PF01964 Radical SAM ThiC family JV59_39465 PF02581 Thiamine monophosphate synthase JV59_39470 PF00899 ThiF family JV59_39485 PF06968 Biotin and Thiamin Synthesis associated domain JV59_39485 PF04055 Radical SAM superfamily JV59_39490 PF01321 Creatinase/Prolidase N-terminal domain JV59_39490 PF00557 Metallopeptidase family M24 JV59_39490 PF00557 Metallopeptidase family M24 JV59_39490 PF01321 Creatinase/Prolidase N-terminal domain JV59_39495 PF03466 LysR substrate binding domain JV59_39495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_39500 PF07690 Major Facilitator Superfamily JV59_39510 PF01037 Lrp/AsnC ligand binding domain JV59_39515 PF00990 Diguanylate cyclase, GGDEF domain JV59_39515 PF00563 EAL domain JV59_39515 PF08448 PAS fold JV59_39520 PF04445 Putative SAM-dependent methyltransferase JV59_39530 PF00892 EamA-like transporter family JV59_39535 PF00582 Universal stress protein family JV59_39540 PF00210 Ferritin-like domain JV59_39545 PF10625 Universal stress protein B (UspB) JV59_39555 PF03440 Aerolysin/Pertussis toxin (APT) domain JV59_39555 PF01117 Aerolysin toxin JV59_39575 PF12852 Cupin JV59_39575 PF12833 Helix-turn-helix domain JV59_39580 PF08668 HDOD domain JV59_39590 PF02646 RmuC family JV59_39595 PF01209 ubiE/COQ5 methyltransferase family JV59_39600 PF02036 SCP-2 sterol transfer family JV59_39605 PF03109 ABC1 family JV59_39615 PF02416 mttA/Hcf106 family JV59_39620 PF00902 Sec-independent protein translocase protein (TatC) JV59_39625 PF01026 TatD related DNase JV59_39630 PF00490 Delta-aminolevulinic acid dehydratase JV59_39640 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JV59_39640 PF00476 DNA polymerase family A JV59_39640 PF01367 5'-3' exonuclease, C-terminal SAM fold JV59_39640 PF01612 3'-5' exonuclease JV59_39645 PF01926 50S ribosome-binding GTPase JV59_39650 PF00034 Cytochrome c JV59_39660 PF04220 Der GTPase activator (YihI) JV59_39670 PF06969 HemN C-terminal domain JV59_39670 PF04055 Radical SAM superfamily JV59_39675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JV59_39675 PF03466 LysR substrate binding domain JV59_39680 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JV59_39680 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JV59_39685 PF04380 Membrane fusogenic activity JV59_39690 PF00873 AcrB/AcrD/AcrF family JV59_39695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JV59_39700 PF00440 Bacterial regulatory proteins, tetR family JV59_39705 PF13361 UvrD-like helicase C-terminal domain JV59_39705 PF00580 UvrD/REP helicase N-terminal domain JV59_39710 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JV59_39740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JV59_39740 PF00005 ABC transporter JV59_39745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JV59_39755 PF00528 Binding-protein-dependent transport system inner membrane component JV59_39755 PF12911 N-terminal TM domain of oligopeptide transport permease C JV59_39770 PF00486 Transcriptional regulatory protein, C terminal JV59_39770 PF00072 Response regulator receiver domain JV59_39795 PF00083 Sugar (and other) transporter JV59_39805 PF07992 Pyridine nucleotide-disulphide oxidoreductase JV59_39805 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JV59_39810 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JV59_39830 PF05114 Protein of unknown function (DUF692) JV59_39840 PF13361 UvrD-like helicase C-terminal domain JV59_39840 PF00580 UvrD/REP helicase N-terminal domain JV59_39850 PF08534 Redoxin JV59_39860 PF01810 LysE type translocator JV59_39870 PF00892 EamA-like transporter family JV59_39875 PF00270 DEAD/DEAH box helicase JV59_39875 PF00271 Helicase conserved C-terminal domain JV59_39875 PF00570 HRDC domain JV59_39875 PF16124 RecQ zinc-binding JV59_39875 PF09382 RQC domain JV59_39885 PF02592 Putative vitamin uptake transporter JV59_39890 PF02541 Ppx/GppA phosphatase family JV59_39895 PF00271 Helicase conserved C-terminal domain JV59_39895 PF00270 DEAD/DEAH box helicase JV59_39900 PF00085 Thioredoxin JV59_39905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JV59_39905 PF07497 Rho termination factor, RNA-binding domain JV59_39905 PF07498 Rho termination factor, N-terminal domain JV59_39915 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JV59_39920 PF00970 Oxidoreductase FAD-binding domain JV59_39920 PF00111 2Fe-2S iron-sulfur cluster binding domain JV59_39920 PF00175 Oxidoreductase NAD-binding domain JV59_39925 PF00175 Oxidoreductase NAD-binding domain JV59_39950 PF07219 HemY protein N-terminus JV59_39955 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase JV59_39960 PF02602 Uroporphyrinogen-III synthase HemD JV59_39970 PF12633 Adenylate cyclase NT domain JV59_39970 PF01295 Adenylate cyclase, class-I JV59_39975 PF01491 Frataxin-like domain JV59_39985 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JV59_39985 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JV59_39990 PF01678 Diaminopimelate epimerase JV59_40000 PF02899 Phage integrase, N-terminal SAM-like domain JV59_40000 PF00589 Phage integrase family JV59_40005 PF13419 Haloacid dehalogenase-like hydrolase JV59_40010 PF08495 FIST N domain JV59_40010 PF00563 EAL domain JV59_40010 PF10442 FIST C domain JV59_40010 PF00990 Diguanylate cyclase, GGDEF domain JV59_40040 PF01810 LysE type translocator JV59_40045 PF00563 EAL domain JV59_40045 PF08668 HDOD domain JV59_40050 PF01022 Bacterial regulatory protein, arsR family JV59_40055 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JV59_40055 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JV59_40100 PF01914 MarC family integral membrane protein JV59_40115 PF00448 SRP54-type protein, GTPase domain JV59_40115 PF02881 SRP54-type protein, helical bundle domain JV59_40120 PF00005 ABC transporter JV59_40125 PF18075 FtsX extracellular domain JV59_40130 PF04545 Sigma-70, region 4 JV59_40130 PF04542 Sigma-70 region 2 JV59_40130 PF00140 Sigma-70 factor, region 1.2 JV59_40135 PF00581 Rhodanese-like domain JV59_40140 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JV59_40140 PF01694 Rhomboid family JV59_40145 PF03748 Flagellar basal body-associated protein FliL JV59_40150 PF04345 Chorismate lyase JV59_40155 PF01040 UbiA prenyltransferase family JV59_40160 PF01553 Acyltransferase JV59_40165 PF01219 Prokaryotic diacylglycerol kinase JV59_40170 PF00717 Peptidase S24-like JV59_40170 PF01726 LexA DNA binding domain JV59_40180 PF01554 MatE JV59_40185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JV59_40185 PF07992 Pyridine nucleotide-disulphide oxidoreductase JV59_40190 PF00440 Bacterial regulatory proteins, tetR family JV59_40200 PF05958 tRNA (Uracil-5-)-methyltransferase JV59_40205 PF07715 TonB-dependent Receptor Plug Domain JV59_40205 PF00593 TonB dependent receptor JV59_40215 PF01177 Asp/Glu/Hydantoin racemase JV59_40250 PF00115 Cytochrome C and Quinol oxidase polypeptide I JV59_40380 PF01070 FMN-dependent dehydrogenase