JV59_00010 SM00859 Semialdehyde dehydrogenase, NAD binding domain JV59_00130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_00130 SM00387 Histidine kinase-like ATPases JV59_00130 SM00388 His Kinase A (phosphoacceptor) domain JV59_00135 SM00448 cheY-homologous receiver domain JV59_00135 SM00862 Transcriptional regulatory protein, C terminal JV59_00170 SM00841 Elongation factor P, C-terminal JV59_00170 SM01185 JV59_00170 JV59_00255 SM00663 RNA polymerase I subunit A N-terminus JV59_00300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_00300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_00365 SM00257 Lysin motif JV59_00365 SM00646 JV59_00365 JV59_00370 SM00853 MutL C terminal dimerisation domain JV59_00370 SM01340 JV59_00370 JV59_00390 SM00244 prohibitin homologues JV59_00395 SM00244 prohibitin homologues JV59_00410 SM00320 WD40 repeats JV59_00450 SM00838 Elongation factor G C-terminus JV59_00450 SM00889 Elongation factor G, domain IV JV59_00650 SM00052 Putative diguanylate phosphodiesterase JV59_00650 SM00267 diguanylate cyclase JV59_00735 SM00560 LamG-like jellyroll fold domain JV59_00760 SM00316 Ribosomal protein S1-like RNA-binding domain JV59_00835 SM00478 endonuclease III JV59_00835 SM00525 JV59_00835 JV59_00850 SM00729 Elongator protein 3, MiaB family, Radical SAM JV59_00870 SM00530 Helix-turn-helix XRE-family like proteins JV59_01040 SM00731 SprT homologues. JV59_01055 SM00861 Transketolase, pyrimidine binding domain JV59_01060 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JV59_01100 SM00267 diguanylate cyclase JV59_01105 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_01105 SM00895 JV59_01105 JV59_01115 SM00420 helix_turn_helix, Deoxyribose operon repressor JV59_01115 SM01134 JV59_01115 JV59_01150 SM00563 Phosphate acyltransferases JV59_01200 SM00650 Ribosomal RNA adenine dimethylases JV59_01220 SM00271 DnaJ molecular chaperone homology domain JV59_01285 SM00400 zinc finger JV59_01285 SM00493 JV59_01285 JV59_01285 SM00766 DNA primase DnaG DnaB-binding JV59_01310 SM01207 JV59_01310 JV59_01360 SM00257 Lysin motif JV59_01370 SM01091 Transporter associated domain JV59_01380 SM00382 ATPases associated with a variety of cellular activities JV59_01380 SM00962 SRP54-type protein, GTPase domain JV59_01380 SM00963 SRP54-type protein, helical bundle domain JV59_01445 SM00644 JV59_01445 JV59_01470 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_01470 SM00895 JV59_01470 JV59_01500 SM00947 Carbonic anhydrase JV59_01510 SM00382 ATPases associated with a variety of cellular activities JV59_01555 SM00487 DEAD-like helicases superfamily JV59_01555 SM00490 helicase superfamily c-terminal domain JV59_01555 SM00847 Helicase associated domain (HA2) Add an annotation JV59_01600 SM00382 ATPases associated with a variety of cellular activities JV59_01610 SM01068 Putative carbohydrate binding domain JV59_01630 SM00382 ATPases associated with a variety of cellular activities JV59_01635 SM00382 ATPases associated with a variety of cellular activities JV59_01655 SM00091 PAS domain JV59_01655 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_01655 SM00387 Histidine kinase-like ATPases JV59_01655 SM00388 His Kinase A (phosphoacceptor) domain JV59_01655 SM00448 cheY-homologous receiver domain JV59_01695 SM00363 S4 RNA-binding domain JV59_01730 SM00382 ATPases associated with a variety of cellular activities JV59_01765 SM00487 DEAD-like helicases superfamily JV59_01765 SM00490 helicase superfamily c-terminal domain JV59_01780 SM00937 JV59_01780 JV59_01800 SM00052 Putative diguanylate phosphodiesterase JV59_01800 SM00091 PAS domain JV59_01800 SM00267 diguanylate cyclase JV59_01835 SM00316 Ribosomal protein S1-like RNA-binding domain JV59_01880 SM00729 Elongator protein 3, MiaB family, Radical SAM JV59_01885 SM00091 PAS domain JV59_01885 SM00267 diguanylate cyclase JV59_01890 SM00073 Histidine Phosphotransfer domain JV59_01890 SM00091 PAS domain JV59_01890 SM00387 Histidine kinase-like ATPases JV59_01890 SM00388 His Kinase A (phosphoacceptor) domain JV59_01890 SM00448 cheY-homologous receiver domain JV59_01925 SM00387 Histidine kinase-like ATPases JV59_01925 SM00433 TopoisomeraseII JV59_01930 SM00434 DNA Topoisomerase IV JV59_01935 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. JV59_01940 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. JV59_01990 SM00749 bacterial OsmY and nodulation domain JV59_02070 SM00842 Cell division protein FtsA JV59_02075 SM00864 Tubulin/FtsZ family, GTPase domain JV59_02075 SM00865 Tubulin/FtsZ family, C-terminal domain JV59_02085 SM00957 SecA DEAD-like domain JV59_02085 SM00958 SecA preprotein cross-linking domain JV59_02100 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain JV59_02175 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain JV59_02205 SM00382 ATPases associated with a variety of cellular activities JV59_02310 SM00267 diguanylate cyclase JV59_02310 SM00448 cheY-homologous receiver domain JV59_02320 SM00487 DEAD-like helicases superfamily JV59_02320 SM00490 helicase superfamily c-terminal domain JV59_02335 SM00495 Chitin-binding domain type 3 JV59_02335 SM00636 JV59_02335 JV59_02385 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase JV59_02440 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_02485 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. JV59_02525 SM00481 DNA polymerase alpha chain like domain JV59_02535 SM00977 TilS substrate C-terminal domain JV59_02560 SM00257 Lysin motif JV59_02645 SM00382 ATPases associated with a variety of cellular activities JV59_02645 SM00930 JV59_02645 JV59_02670 SM00642 Alpha-amylase domain JV59_02805 SM00729 Elongator protein 3, MiaB family, Radical SAM JV59_02845 SM00278 Helix-hairpin-helix DNA-binding motif class 1 JV59_02845 SM00292 breast cancer carboxy-terminal domain JV59_02845 SM00532 Ligase N family JV59_02930 SM00387 Histidine kinase-like ATPases JV59_02945 SM00862 Transcriptional regulatory protein, C terminal JV59_03210 SM00937 JV59_03210 JV59_03340 SM00900 JV59_03340 JV59_05005 SM00267 diguanylate cyclase JV59_05465 SM00354 helix_turn _helix lactose operon repressor JV59_05500 SM00354 helix_turn _helix lactose operon repressor JV59_06385 SM00823 Phosphopantetheine attachment site JV59_06385 SM01294 JV59_06385 JV59_09510 SM00062 Bacterial periplasmic substrate-binding proteins JV59_09510 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. JV59_09515 SM00382 ATPases associated with a variety of cellular activities JV59_11870 SM00382 ATPases associated with a variety of cellular activities JV59_13275 SM01018 B12 binding domain JV59_13570 SM01374 JV59_13570 JV59_15945 SM00382 ATPases associated with a variety of cellular activities JV59_15950 SM00382 ATPases associated with a variety of cellular activities JV59_15975 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_15975 SM00895 JV59_15975 JV59_16005 SM01130 JV59_16005 JV59_16010 SM00382 ATPases associated with a variety of cellular activities JV59_16025 SM00342 helix_turn_helix, arabinose operon control protein JV59_16040 SM00347 helix_turn_helix multiple antibiotic resistance protein JV59_16055 SM00729 Elongator protein 3, MiaB family, Radical SAM JV59_16060 SM00054 EF-hand, calcium binding motif JV59_16080 SM00495 Chitin-binding domain type 3 JV59_16195 SM00862 Transcriptional regulatory protein, C terminal JV59_16245 SM00936 Penicillin-binding protein 5, C-terminal domain JV59_16400 SM00062 Bacterial periplasmic substrate-binding proteins JV59_16400 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. JV59_16410 SM00382 ATPases associated with a variety of cellular activities JV59_16425 SM00642 Alpha-amylase domain JV59_16440 SM00052 Putative diguanylate phosphodiesterase JV59_16460 SM00226 Low molecular weight phosphatase family JV59_16470 SM00984 UDP binding domain JV59_16545 SM00710 Parallel beta-helix repeats JV59_16555 SM00020 Trypsin-like serine protease JV59_16560 SM00020 Trypsin-like serine protease JV59_16565 SM00421 helix_turn_helix, Lux Regulon JV59_16585 SM00052 Putative diguanylate phosphodiesterase JV59_16585 SM00267 diguanylate cyclase JV59_16660 SM01322 JV59_16660 JV59_16665 SM00357 Cold shock protein domain JV59_16685 SM00936 Penicillin-binding protein 5, C-terminal domain JV59_16735 SM00382 ATPases associated with a variety of cellular activities JV59_16755 SM00387 Histidine kinase-like ATPases JV59_16760 SM00448 cheY-homologous receiver domain JV59_16760 SM00850 LytTr DNA-binding domain JV59_16790 SM00642 Alpha-amylase domain JV59_16795 SM00642 Alpha-amylase domain JV59_16815 SM00382 ATPases associated with a variety of cellular activities JV59_16820 SM00382 ATPases associated with a variety of cellular activities JV59_16860 SM00822 JV59_16860 JV59_16860 SM00823 Phosphopantetheine attachment site JV59_16860 SM00825 Beta-ketoacyl synthase JV59_16860 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. JV59_16880 SM00829 Enoylreductase JV59_16895 SM00448 cheY-homologous receiver domain JV59_16895 SM00862 Transcriptional regulatory protein, C terminal JV59_16900 SM00387 Histidine kinase-like ATPases JV59_16900 SM00388 His Kinase A (phosphoacceptor) domain JV59_16910 SM00267 diguanylate cyclase JV59_16925 SM00530 Helix-turn-helix XRE-family like proteins JV59_16930 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain JV59_16970 SM00342 helix_turn_helix, arabinose operon control protein JV59_17080 SM00267 diguanylate cyclase JV59_17100 SM00267 diguanylate cyclase JV59_17100 SM01079 JV59_17100 JV59_17130 SM01350 JV59_17130 JV59_17135 SM00354 helix_turn _helix lactose operon repressor JV59_17140 SM00530 Helix-turn-helix XRE-family like proteins JV59_17165 SM00382 ATPases associated with a variety of cellular activities JV59_17195 SM00886 Stress responsive A/B Barrel Domain JV59_17200 SM00506 Appr-1"-p processing enzyme JV59_17225 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_17250 SM00387 Histidine kinase-like ATPases JV59_17255 SM00984 UDP binding domain JV59_17265 SM00495 Chitin-binding domain type 3 JV59_17280 SM00382 ATPases associated with a variety of cellular activities JV59_17300 SM00354 helix_turn _helix lactose operon repressor JV59_17305 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_17310 SM00387 Histidine kinase-like ATPases JV59_17320 SM00487 DEAD-like helicases superfamily JV59_17320 SM00490 helicase superfamily c-terminal domain JV59_17330 SM00357 Cold shock protein domain JV59_17330 SM00955 JV59_17330 JV59_17360 SM00342 helix_turn_helix, arabinose operon control protein JV59_17370 SM00382 ATPases associated with a variety of cellular activities JV59_17400 SM00729 Elongator protein 3, MiaB family, Radical SAM JV59_17420 SM00382 ATPases associated with a variety of cellular activities JV59_17460 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JV59_17475 SM00387 Histidine kinase-like ATPases JV59_17475 SM00388 His Kinase A (phosphoacceptor) domain JV59_17475 SM00448 cheY-homologous receiver domain JV59_17510 SM00342 helix_turn_helix, arabinose operon control protein JV59_17525 SM00448 cheY-homologous receiver domain JV59_17525 SM00862 Transcriptional regulatory protein, C terminal JV59_17530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_17530 SM00387 Histidine kinase-like ATPases JV59_17530 SM00388 His Kinase A (phosphoacceptor) domain JV59_17550 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_17565 SM00344 helix_turn_helix ASNC type JV59_17590 SM01266 JV59_17590 JV59_17610 SM00028 Tetratricopeptide repeats JV59_17615 SM00327 von Willebrand factor (vWF) type A domain JV59_17635 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_17635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_17665 SM00388 His Kinase A (phosphoacceptor) domain JV59_17670 SM00448 cheY-homologous receiver domain JV59_17670 SM00862 Transcriptional regulatory protein, C terminal JV59_17685 SM00448 cheY-homologous receiver domain JV59_17685 SM00862 Transcriptional regulatory protein, C terminal JV59_17690 SM00387 Histidine kinase-like ATPases JV59_17690 SM00388 His Kinase A (phosphoacceptor) domain JV59_17715 SM00530 Helix-turn-helix XRE-family like proteins JV59_17720 SM00448 cheY-homologous receiver domain JV59_17725 SM00052 Putative diguanylate phosphodiesterase JV59_17735 SM00829 Enoylreductase JV59_17750 SM01057 Eukaryotic-type carbonic anhydrase JV59_17795 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor JV59_17805 SM00448 cheY-homologous receiver domain JV59_17810 SM00448 cheY-homologous receiver domain JV59_17815 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) JV59_17815 SM00091 PAS domain JV59_17815 SM00387 Histidine kinase-like ATPases JV59_17815 SM00388 His Kinase A (phosphoacceptor) domain JV59_17815 SM00448 cheY-homologous receiver domain JV59_17910 SM00862 Transcriptional regulatory protein, C terminal JV59_18005 SM00382 ATPases associated with a variety of cellular activities JV59_18015 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_18015 SM00866 JV59_18015 JV59_18035 SM00631 JV59_18035 JV59_18075 SM00267 diguanylate cyclase JV59_18080 SM00260 Two component signalling adaptor domain JV59_18080 SM00448 cheY-homologous receiver domain JV59_18120 SM00382 ATPases associated with a variety of cellular activities JV59_18125 SM00327 von Willebrand factor (vWF) type A domain JV59_18150 SM00344 helix_turn_helix ASNC type JV59_18155 SM00267 diguanylate cyclase JV59_18160 SM00347 helix_turn_helix multiple antibiotic resistance protein JV59_18170 SM00479 JV59_18170 JV59_18175 SM00100 Cyclic nucleotide-monophosphate binding domain JV59_18175 SM00116 Domain in cystathionine beta-synthase and other proteins. JV59_18180 SM00422 helix_turn_helix, mercury resistance JV59_18190 SM00052 Putative diguanylate phosphodiesterase JV59_18190 SM00267 diguanylate cyclase JV59_18205 SM00382 ATPases associated with a variety of cellular activities JV59_18215 SM00220 Serine/Threonine protein kinases, catalytic domain JV59_18220 SM00220 Serine/Threonine protein kinases, catalytic domain JV59_18325 SM00052 Putative diguanylate phosphodiesterase JV59_18385 SM00342 helix_turn_helix, arabinose operon control protein JV59_18390 SM00342 helix_turn_helix, arabinose operon control protein JV59_18420 SM00422 helix_turn_helix, mercury resistance JV59_18455 SM00822 JV59_18455 JV59_18470 SM00893 Electron transfer flavoprotein domain JV59_18475 SM00893 Electron transfer flavoprotein domain JV59_18480 SM00267 diguanylate cyclase JV59_18490 SM00861 Transketolase, pyrimidine binding domain JV59_18500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_18500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_18505 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. JV59_18505 SM00267 diguanylate cyclase JV59_18560 SM00926 Molybdopterin oxidoreductase Fe4S4 domain JV59_18575 SM01012 JV59_18575 JV59_18590 SM00382 ATPases associated with a variety of cellular activities JV59_18645 SM00387 Histidine kinase-like ATPases JV59_18645 SM00448 cheY-homologous receiver domain JV59_18665 SM00833 Cobalamin synthesis protein cobW C-terminal domain JV59_18675 SM00495 Chitin-binding domain type 3 JV59_18690 SM00267 diguanylate cyclase JV59_18700 SM00267 diguanylate cyclase JV59_18705 SM00091 PAS domain JV59_18705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_18715 SM00344 helix_turn_helix ASNC type JV59_18720 SM00861 Transketolase, pyrimidine binding domain JV59_18750 SM00450 Rhodanese Homology Domain JV59_18765 SM00852 Probable molybdopterin binding domain JV59_18775 SM00487 DEAD-like helicases superfamily JV59_18775 SM00490 helicase superfamily c-terminal domain JV59_18800 SM00487 DEAD-like helicases superfamily JV59_18800 SM00490 helicase superfamily c-terminal domain JV59_18865 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_18915 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain JV59_18920 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_18920 SM00866 JV59_18920 JV59_18925 SM00851 MGS-like domain JV59_18935 SM00073 Histidine Phosphotransfer domain JV59_18935 SM00387 Histidine kinase-like ATPases JV59_18935 SM00388 His Kinase A (phosphoacceptor) domain JV59_18935 SM00448 cheY-homologous receiver domain JV59_18955 SM00342 helix_turn_helix, arabinose operon control protein JV59_18990 SM00354 helix_turn _helix lactose operon repressor JV59_19020 SM00382 ATPases associated with a variety of cellular activities JV59_19030 SM00267 diguanylate cyclase JV59_19030 SM00448 cheY-homologous receiver domain JV59_19035 SM00267 diguanylate cyclase JV59_19050 SM01002 Alanine dehydrogenase/PNT, C-terminal domain JV59_19050 SM01003 Alanine dehydrogenase/PNT, N-terminal domain JV59_19060 SM00387 Histidine kinase-like ATPases JV59_19060 SM00388 His Kinase A (phosphoacceptor) domain JV59_19065 SM00448 cheY-homologous receiver domain JV59_19065 SM00862 Transcriptional regulatory protein, C terminal JV59_19115 SM00881 CoA binding domain JV59_19160 SM00782 PhnA Zinc-Ribbon JV59_19175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_19180 SM00387 Histidine kinase-like ATPases JV59_19180 SM00388 His Kinase A (phosphoacceptor) domain JV59_19180 SM00448 cheY-homologous receiver domain JV59_19185 SM00448 cheY-homologous receiver domain JV59_19185 SM00862 Transcriptional regulatory protein, C terminal JV59_19200 SM00830 Chorismate mutase type II JV59_19205 SM00052 Putative diguanylate phosphodiesterase JV59_19205 SM00267 diguanylate cyclase JV59_19205 SM01049 JV59_19205 JV59_19210 SM00062 Bacterial periplasmic substrate-binding proteins JV59_19250 SM00116 Domain in cystathionine beta-synthase and other proteins. JV59_19255 SM00867 YceI-like domain JV59_19285 SM00421 helix_turn_helix, Lux Regulon JV59_19285 SM00448 cheY-homologous receiver domain JV59_19290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_19290 SM00387 Histidine kinase-like ATPases JV59_19305 SM00926 Molybdopterin oxidoreductase Fe4S4 domain JV59_19330 SM00796 Allophanate hydrolase subunit 1 JV59_19335 SM00797 Allophanate hydrolase subunit 2 JV59_19350 SM00382 ATPases associated with a variety of cellular activities JV59_19365 SM00052 Putative diguanylate phosphodiesterase JV59_19365 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. JV59_19365 SM00267 diguanylate cyclase JV59_19375 SM00271 DnaJ molecular chaperone homology domain JV59_19425 SM00387 Histidine kinase-like ATPases JV59_19425 SM00388 His Kinase A (phosphoacceptor) domain JV59_19425 SM00448 cheY-homologous receiver domain JV59_19490 SM00062 Bacterial periplasmic substrate-binding proteins JV59_19550 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor JV59_19555 SM00450 Rhodanese Homology Domain JV59_19575 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins JV59_19610 SM00822 JV59_19610 JV59_19635 SM00354 helix_turn _helix lactose operon repressor JV59_19645 SM01038 Beta galactosidase small chain JV59_19665 SM00240 Forkhead associated domain JV59_19720 SM00220 Serine/Threonine protein kinases, catalytic domain JV59_19755 SM00382 ATPases associated with a variety of cellular activities JV59_19755 SM01086 C-terminal, D2-small domain, of ClpB protein JV59_19760 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. JV59_19760 SM00382 ATPases associated with a variety of cellular activities JV59_19790 SM00062 Bacterial periplasmic substrate-binding proteins JV59_19790 SM00267 diguanylate cyclase JV59_19795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_19795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_19810 SM00990 JV59_19810 JV59_19815 SM00448 cheY-homologous receiver domain JV59_19815 SM00862 Transcriptional regulatory protein, C terminal JV59_19820 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_19820 SM00387 Histidine kinase-like ATPases JV59_19820 SM00388 His Kinase A (phosphoacceptor) domain JV59_19835 SM00267 diguanylate cyclase JV59_19855 SM00382 ATPases associated with a variety of cellular activities JV59_19885 SM00421 helix_turn_helix, Lux Regulon JV59_19885 SM00448 cheY-homologous receiver domain JV59_19895 SM00448 cheY-homologous receiver domain JV59_19900 SM00052 Putative diguanylate phosphodiesterase JV59_19900 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) JV59_19900 SM00267 diguanylate cyclase JV59_19905 SM00267 diguanylate cyclase JV59_19915 SM00382 ATPases associated with a variety of cellular activities JV59_19935 SM00267 diguanylate cyclase JV59_19945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_19945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_19945 SM01049 JV59_19945 JV59_19965 SM00382 ATPases associated with a variety of cellular activities JV59_20000 SM00382 ATPases associated with a variety of cellular activities JV59_20030 SM00062 Bacterial periplasmic substrate-binding proteins JV59_20055 SM01240 JV59_20055 JV59_20070 SM00448 cheY-homologous receiver domain JV59_20075 SM00448 cheY-homologous receiver domain JV59_20075 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_20080 SM00091 PAS domain JV59_20080 SM00387 Histidine kinase-like ATPases JV59_20080 SM00388 His Kinase A (phosphoacceptor) domain JV59_20080 SM00448 cheY-homologous receiver domain JV59_20105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_20135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_20135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_20140 SM00642 Alpha-amylase domain JV59_20160 SM00342 helix_turn_helix, arabinose operon control protein JV59_20170 SM00091 PAS domain JV59_20170 SM00267 diguanylate cyclase JV59_20175 SM00420 helix_turn_helix, Deoxyribose operon repressor JV59_20175 SM01134 JV59_20175 JV59_20180 SM00421 helix_turn_helix, Lux Regulon JV59_20210 SM00421 helix_turn_helix, Lux Regulon JV59_20210 SM00448 cheY-homologous receiver domain JV59_20215 SM00387 Histidine kinase-like ATPases JV59_20230 SM00481 DNA polymerase alpha chain like domain JV59_20240 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_20255 SM01350 JV59_20255 JV59_20275 SM00382 ATPases associated with a variety of cellular activities JV59_20290 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_20330 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain JV59_20335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_20335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_20340 SM00344 helix_turn_helix ASNC type JV59_20375 SM00829 Enoylreductase JV59_20460 SM01266 JV59_20460 JV59_20465 SM00642 Alpha-amylase domain JV59_20470 SM00640 Glycosyl hydrolases family 32 JV59_20480 SM00382 ATPases associated with a variety of cellular activities JV59_20510 SM00354 helix_turn _helix lactose operon repressor JV59_20515 SM00382 ATPases associated with a variety of cellular activities JV59_20535 SM00387 Histidine kinase-like ATPases JV59_20535 SM00388 His Kinase A (phosphoacceptor) domain JV59_20540 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor JV59_20540 SM00448 cheY-homologous receiver domain JV59_20570 SM00267 diguanylate cyclase JV59_20570 SM01079 JV59_20570 JV59_20580 SM00487 DEAD-like helicases superfamily JV59_20580 SM00490 helicase superfamily c-terminal domain JV59_20585 SM01022 JV59_20585 JV59_20595 SM00062 Bacterial periplasmic substrate-binding proteins JV59_20600 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. JV59_20600 SM00267 diguanylate cyclase JV59_20610 SM00829 Enoylreductase JV59_20645 SM00642 Alpha-amylase domain JV59_20670 SM00450 Rhodanese Homology Domain JV59_20680 SM00422 helix_turn_helix, mercury resistance JV59_20715 SM00382 ATPases associated with a variety of cellular activities JV59_20735 SM00387 Histidine kinase-like ATPases JV59_20735 SM00388 His Kinase A (phosphoacceptor) domain JV59_20735 SM00448 cheY-homologous receiver domain JV59_20755 SM00387 Histidine kinase-like ATPases JV59_20760 SM00448 cheY-homologous receiver domain JV59_20760 SM00862 Transcriptional regulatory protein, C terminal JV59_20795 SM00422 helix_turn_helix, mercury resistance JV59_20820 SM00267 diguanylate cyclase JV59_20865 SM00382 ATPases associated with a variety of cellular activities JV59_20910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_20910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_20915 SM01034 Sensors of blue-light using FAD JV59_20925 SM00344 helix_turn_helix ASNC type JV59_20935 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_20940 SM00342 helix_turn_helix, arabinose operon control protein JV59_20960 SM00342 helix_turn_helix, arabinose operon control protein JV59_20960 SM00871 Bacterial transcription activator, effector binding domain JV59_20985 SM00642 Alpha-amylase domain JV59_20990 SM00347 helix_turn_helix multiple antibiotic resistance protein JV59_21045 SM00422 helix_turn_helix, mercury resistance JV59_21055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_21055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_21065 SM00422 helix_turn_helix, mercury resistance JV59_21085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_21085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_21095 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_21095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_21095 SM01049 JV59_21095 JV59_21110 SM00642 Alpha-amylase domain JV59_21125 SM00530 Helix-turn-helix XRE-family like proteins JV59_21155 SM00829 Enoylreductase JV59_21170 SM00382 ATPases associated with a variety of cellular activities JV59_21215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_21215 SM00387 Histidine kinase-like ATPases JV59_21215 SM01049 JV59_21215 JV59_21235 SM00342 helix_turn_helix, arabinose operon control protein JV59_21255 SM00382 ATPases associated with a variety of cellular activities JV59_21270 SM00530 Helix-turn-helix XRE-family like proteins JV59_21355 SM00448 cheY-homologous receiver domain JV59_21375 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins JV59_21405 SM00062 Bacterial periplasmic substrate-binding proteins JV59_21450 SM00450 Rhodanese Homology Domain JV59_21455 SM00342 helix_turn_helix, arabinose operon control protein JV59_21460 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. JV59_21460 SM00382 ATPases associated with a variety of cellular activities JV59_21515 SM00342 helix_turn_helix, arabinose operon control protein JV59_21545 SM00448 cheY-homologous receiver domain JV59_21545 SM00862 Transcriptional regulatory protein, C terminal JV59_21550 SM00388 His Kinase A (phosphoacceptor) domain JV59_21570 SM00347 helix_turn_helix multiple antibiotic resistance protein JV59_21595 SM00344 helix_turn_helix ASNC type JV59_21630 SM00587 ZnF_C4 abd HLH domain containing kinases domain JV59_21660 SM00671 Sel1-like repeats. JV59_21680 SM00382 ATPases associated with a variety of cellular activities JV59_21715 SM00267 diguanylate cyclase JV59_21720 SM00382 ATPases associated with a variety of cellular activities JV59_21740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_21740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_21800 SM00028 Tetratricopeptide repeats JV59_21900 SM00382 ATPases associated with a variety of cellular activities JV59_21975 SM01006 Siderophore biosynthesis protein domain JV59_21995 SM00382 ATPases associated with a variety of cellular activities JV59_22020 SM00642 Alpha-amylase domain JV59_22025 SM00872 Alpha mannosidase, middle domain JV59_22055 SM00346 helix_turn_helix isocitrate lyase regulation JV59_22080 SM00248 ankyrin repeats JV59_22130 SM00342 helix_turn_helix, arabinose operon control protein JV59_22130 SM00871 Bacterial transcription activator, effector binding domain JV59_22145 SM00342 helix_turn_helix, arabinose operon control protein JV59_22175 SM00342 helix_turn_helix, arabinose operon control protein JV59_22180 SM00342 helix_turn_helix, arabinose operon control protein JV59_22230 SM00382 ATPases associated with a variety of cellular activities JV59_22235 SM00382 ATPases associated with a variety of cellular activities JV59_22240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_22240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_22280 SM00872 Alpha mannosidase, middle domain JV59_22290 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_22290 SM00866 JV59_22290 JV59_22305 SM00563 Phosphate acyltransferases JV59_22345 SM00342 helix_turn_helix, arabinose operon control protein JV59_22415 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain JV59_22425 SM00642 Alpha-amylase domain JV59_22440 SM00421 helix_turn_helix, Lux Regulon JV59_22480 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_22480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_22480 SM01049 JV59_22480 JV59_22485 SM00342 helix_turn_helix, arabinose operon control protein JV59_22505 SM00342 helix_turn_helix, arabinose operon control protein JV59_22535 SM00530 Helix-turn-helix XRE-family like proteins JV59_22555 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_22555 SM00895 JV59_22555 JV59_22560 SM01092 CO dehydrogenase flavoprotein C-terminal domain JV59_22565 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JV59_22585 SM00387 Histidine kinase-like ATPases JV59_22585 SM00388 His Kinase A (phosphoacceptor) domain JV59_22585 SM00448 cheY-homologous receiver domain JV59_22595 SM00344 helix_turn_helix ASNC type JV59_22605 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_22605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_22670 SM00448 cheY-homologous receiver domain JV59_22670 SM00862 Transcriptional regulatory protein, C terminal JV59_22675 SM00387 Histidine kinase-like ATPases JV59_22700 SM00849 Metallo-beta-lactamase superfamily JV59_22805 SM01119 JV59_22805 JV59_22815 SM00062 Bacterial periplasmic substrate-binding proteins JV59_22820 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_22820 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_22865 SM00988 UreE urease accessory protein, N-terminal domain JV59_22890 SM00382 ATPases associated with a variety of cellular activities JV59_22895 SM00382 ATPases associated with a variety of cellular activities JV59_22920 SM00342 helix_turn_helix, arabinose operon control protein JV59_22985 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain JV59_23010 SM00347 helix_turn_helix multiple antibiotic resistance protein JV59_23020 SM00052 Putative diguanylate phosphodiesterase JV59_23020 SM00267 diguanylate cyclase JV59_23020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_23055 SM00364 Leucine-rich repeats, bacterial type JV59_23055 SM00369 Leucine-rich repeats, typical (most populated) subfamily JV59_23075 SM00822 JV59_23075 JV59_23110 SM00382 ATPases associated with a variety of cellular activities JV59_23115 SM00382 ATPases associated with a variety of cellular activities JV59_23140 SM00470 ParB-like nuclease domain JV59_23150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_23150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_23160 SM00448 cheY-homologous receiver domain JV59_23165 SM00073 Histidine Phosphotransfer domain JV59_23165 SM00260 Two component signalling adaptor domain JV59_23165 SM00387 Histidine kinase-like ATPases JV59_23165 SM01231 JV59_23165 JV59_23170 SM00260 Two component signalling adaptor domain JV59_23175 SM00260 Two component signalling adaptor domain JV59_23180 SM00091 PAS domain JV59_23180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_23180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_23185 SM00138 Methyltransferase, chemotaxis proteins JV59_23195 SM00448 cheY-homologous receiver domain JV59_23200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_23210 SM00331 Sigma factor PP2C-like phosphatases JV59_23210 SM00448 cheY-homologous receiver domain JV59_23225 SM00342 helix_turn_helix, arabinose operon control protein JV59_23255 SM00100 Cyclic nucleotide-monophosphate binding domain JV59_23265 SM00857 Resolvase, N terminal domain JV59_23320 SM00382 ATPases associated with a variety of cellular activities JV59_23345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_23345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_23355 SM01119 JV59_23355 JV59_23380 SM00829 Enoylreductase JV59_23395 SM00382 ATPases associated with a variety of cellular activities JV59_23430 SM00342 helix_turn_helix, arabinose operon control protein JV59_23430 SM00871 Bacterial transcription activator, effector binding domain JV59_23440 SM00014 Acid phosphatase homologues JV59_23480 SM00382 ATPases associated with a variety of cellular activities JV59_23495 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. JV59_23495 SM00267 diguanylate cyclase JV59_23525 SM00829 Enoylreductase JV59_23560 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor JV59_23610 SM00387 Histidine kinase-like ATPases JV59_23610 SM00388 His Kinase A (phosphoacceptor) domain JV59_23615 SM00448 cheY-homologous receiver domain JV59_23615 SM00862 Transcriptional regulatory protein, C terminal JV59_23655 SM00448 cheY-homologous receiver domain JV59_23655 SM00862 Transcriptional regulatory protein, C terminal JV59_23660 SM00387 Histidine kinase-like ATPases JV59_23660 SM00388 His Kinase A (phosphoacceptor) domain JV59_23680 SM00448 cheY-homologous receiver domain JV59_23680 SM00862 Transcriptional regulatory protein, C terminal JV59_23690 SM00342 helix_turn_helix, arabinose operon control protein JV59_23690 SM01009 AlkA N-terminal domain JV59_23725 SM00342 helix_turn_helix, arabinose operon control protein JV59_23725 SM00871 Bacterial transcription activator, effector binding domain JV59_23735 SM00495 Chitin-binding domain type 3 JV59_23740 SM00052 Putative diguanylate phosphodiesterase JV59_23750 SM00342 helix_turn_helix, arabinose operon control protein JV59_23895 SM00062 Bacterial periplasmic substrate-binding proteins JV59_23955 SM00420 helix_turn_helix, Deoxyribose operon repressor JV59_23955 SM01134 JV59_23955 JV59_24015 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_24030 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins JV59_24030 SM00495 Chitin-binding domain type 3 JV59_24030 SM00636 JV59_24030 JV59_24035 SM00382 ATPases associated with a variety of cellular activities JV59_24040 SM00052 Putative diguanylate phosphodiesterase JV59_24040 SM00267 diguanylate cyclase JV59_24060 SM00421 helix_turn_helix, Lux Regulon JV59_24075 SM00342 helix_turn_helix, arabinose operon control protein JV59_24100 SM00344 helix_turn_helix ASNC type JV59_24110 SM00382 ATPases associated with a variety of cellular activities JV59_24190 SM00422 helix_turn_helix, mercury resistance JV59_24200 SM00257 Lysin motif JV59_24210 SM00487 DEAD-like helicases superfamily JV59_24210 SM00490 helicase superfamily c-terminal domain JV59_24215 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins JV59_24260 SM00829 Enoylreductase JV59_24285 SM00530 Helix-turn-helix XRE-family like proteins JV59_24300 SM00966 SpoVT / AbrB like domain JV59_24310 SM00822 JV59_24310 JV59_24355 SM01118 JV59_24355 JV59_24415 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_24470 SM00507 HNH nucleases JV59_24750 SM00382 ATPases associated with a variety of cellular activities JV59_24760 SM00382 ATPases associated with a variety of cellular activities JV59_24795 SM00530 Helix-turn-helix XRE-family like proteins JV59_24805 SM00267 diguanylate cyclase JV59_24825 SM00382 ATPases associated with a variety of cellular activities JV59_24840 SM00344 helix_turn_helix ASNC type JV59_24860 SM00347 helix_turn_helix multiple antibiotic resistance protein JV59_24865 SM00966 SpoVT / AbrB like domain JV59_24880 SM00632 JV59_24880 JV59_24880 SM00642 Alpha-amylase domain JV59_24885 SM00155 Phospholipase D. Active site motifs. JV59_24915 SM00342 helix_turn_helix, arabinose operon control protein JV59_24955 SM00420 helix_turn_helix, Deoxyribose operon repressor JV59_24975 SM00862 Transcriptional regulatory protein, C terminal JV59_25075 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_25075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_25095 SM00382 ATPases associated with a variety of cellular activities JV59_25240 SM00971 Serine acetyltransferase, N-terminal JV59_25270 SM00823 Phosphopantetheine attachment site JV59_25425 SM00354 helix_turn _helix lactose operon repressor JV59_25535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_25535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_25535 SM01049 JV59_25535 JV59_25560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_25560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_25565 SM00052 Putative diguanylate phosphodiesterase JV59_25590 SM00387 Histidine kinase-like ATPases JV59_25595 SM01034 Sensors of blue-light using FAD JV59_25645 SM00530 Helix-turn-helix XRE-family like proteins JV59_25705 SM00862 Transcriptional regulatory protein, C terminal JV59_25725 SM00448 cheY-homologous receiver domain JV59_25730 SM00448 cheY-homologous receiver domain JV59_25740 SM00387 Histidine kinase-like ATPases JV59_25740 SM00388 His Kinase A (phosphoacceptor) domain JV59_25745 SM00052 Putative diguanylate phosphodiesterase JV59_25745 SM00448 cheY-homologous receiver domain JV59_25750 SM00448 cheY-homologous receiver domain JV59_25785 SM00387 Histidine kinase-like ATPases JV59_25830 SM00822 JV59_25830 JV59_25855 SM00448 cheY-homologous receiver domain JV59_25855 SM00862 Transcriptional regulatory protein, C terminal JV59_25860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_25860 SM00387 Histidine kinase-like ATPases JV59_25860 SM00388 His Kinase A (phosphoacceptor) domain JV59_25910 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor JV59_25930 SM00476 deoxyribonuclease I JV59_25945 SM00028 Tetratricopeptide repeats JV59_25990 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. JV59_25990 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. JV59_25995 SM00649 Ribosomal protein L11/L12 JV59_26035 SM00479 JV59_26035 JV59_26160 SM01005 Alanine racemase, C-terminal domain JV59_26185 SM00382 ATPases associated with a variety of cellular activities JV59_26255 SM00382 ATPases associated with a variety of cellular activities JV59_26295 SM00421 helix_turn_helix, Lux Regulon JV59_26320 SM00965 Secretin and TonB N terminus short domain JV59_26325 SM00382 ATPases associated with a variety of cellular activities JV59_26330 SM00028 Tetratricopeptide repeats JV59_26335 SM00382 ATPases associated with a variety of cellular activities JV59_26485 SM01152 JV59_26485 JV59_26490 SM00732 Likely ribonuclease with RNase H fold. JV59_26555 SM00905 Dihydroneopterin aldolase JV59_26595 SM00938 Nitrogen regulatory protein P-II JV59_26610 SM01103 JV59_26610 JV59_26625 SM00052 Putative diguanylate phosphodiesterase JV59_26625 SM00267 diguanylate cyclase JV59_26685 SM00518 AP endonuclease family 2 JV59_26690 SM00986 Uracil DNA glycosylase superfamily JV59_26690 SM00987 UreE urease accessory protein, C-terminal domain JV59_26720 SM01133 JV59_26720 JV59_26750 SM00464 Found in ATP-dependent protease La (LON) JV59_26780 SM00900 JV59_26780 JV59_26900 SM00935 Outer membrane protein (OmpH-like) JV59_26930 SM00938 Nitrogen regulatory protein P-II JV59_26945 SM00849 Metallo-beta-lactamase superfamily JV59_26960 SM00479 JV59_26960 JV59_27015 SM00354 helix_turn _helix lactose operon repressor JV59_27060 SM00729 Elongator protein 3, MiaB family, Radical SAM JV59_27075 SM00936 Penicillin-binding protein 5, C-terminal domain JV59_27115 SM00116 Domain in cystathionine beta-synthase and other proteins. JV59_27115 SM01091 Transporter associated domain JV59_27155 SM00771 ZipA, C-terminal domain (FtsZ-binding) JV59_27175 SM00244 prohibitin homologues JV59_27205 SM00938 Nitrogen regulatory protein P-II JV59_27210 SM00116 Domain in cystathionine beta-synthase and other proteins. JV59_27235 SM00862 Transcriptional regulatory protein, C terminal JV59_27310 SM00530 Helix-turn-helix XRE-family like proteins JV59_27345 SM00858 JV59_27345 JV59_27350 SM00260 Two component signalling adaptor domain JV59_27350 SM00448 cheY-homologous receiver domain JV59_27355 SM00138 Methyltransferase, chemotaxis proteins JV59_27400 SM00047 Lysozyme subfamily 2 JV59_27475 SM01400 JV59_27475 JV59_27560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_27560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_27575 SM01130 JV59_27575 JV59_27590 SM00479 JV59_27590 JV59_27610 SM00478 endonuclease III JV59_27610 SM00525 JV59_27610 JV59_27655 SM00858 JV59_27655 JV59_27815 SM00382 ATPases associated with a variety of cellular activities JV59_27840 SM00382 ATPases associated with a variety of cellular activities JV59_27865 SM00487 DEAD-like helicases superfamily JV59_27865 SM00490 helicase superfamily c-terminal domain JV59_27870 SM00382 ATPases associated with a variety of cellular activities JV59_27870 SM00448 cheY-homologous receiver domain JV59_27885 SM00729 Elongator protein 3, MiaB family, Radical SAM JV59_27890 SM00852 Probable molybdopterin binding domain JV59_27910 SM00267 diguanylate cyclase JV59_27920 SM00116 Domain in cystathionine beta-synthase and other proteins. JV59_27950 SM00862 Transcriptional regulatory protein, C terminal JV59_28000 SM00905 Dihydroneopterin aldolase JV59_28010 SM00226 Low molecular weight phosphatase family JV59_28035 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain JV59_28035 SM00437 Bacterial DNA topoisomerase I DNA-binding domain JV59_28035 SM00493 JV59_28035 JV59_28040 SM00342 helix_turn_helix, arabinose operon control protein JV59_28080 SM00382 ATPases associated with a variety of cellular activities JV59_28080 SM00448 cheY-homologous receiver domain JV59_28085 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) JV59_28085 SM00091 PAS domain JV59_28085 SM00387 Histidine kinase-like ATPases JV59_28095 SM00052 Putative diguanylate phosphodiesterase JV59_28100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_28110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_28110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_28135 SM00073 Histidine Phosphotransfer domain JV59_28155 SM00859 Semialdehyde dehydrogenase, NAD binding domain JV59_28240 SM00098 Alkaline phosphatase homologues JV59_28270 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JV59_28295 SM00052 Putative diguanylate phosphodiesterase JV59_28310 SM00840 JV59_28310 JV59_28320 SM00316 Ribosomal protein S1-like RNA-binding domain JV59_28350 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain JV59_28350 SM00437 Bacterial DNA topoisomerase I DNA-binding domain JV59_28350 SM00493 JV59_28350 JV59_28385 SM00354 helix_turn _helix lactose operon repressor JV59_28395 SM00448 cheY-homologous receiver domain JV59_28395 SM00862 Transcriptional regulatory protein, C terminal JV59_28425 SM00342 helix_turn_helix, arabinose operon control protein JV59_28485 SM00357 Cold shock protein domain JV59_28495 SM00382 ATPases associated with a variety of cellular activities JV59_28495 SM01086 C-terminal, D2-small domain, of ClpB protein JV59_28555 SM00822 JV59_28555 JV59_28580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_28585 SM00278 Helix-hairpin-helix DNA-binding motif class 1 JV59_28590 SM00382 ATPases associated with a variety of cellular activities JV59_28645 SM00028 Tetratricopeptide repeats JV59_28675 SM00387 Histidine kinase-like ATPases JV59_28675 SM00388 His Kinase A (phosphoacceptor) domain JV59_28675 SM00448 cheY-homologous receiver domain JV59_28735 SM00387 Histidine kinase-like ATPases JV59_28735 SM00388 His Kinase A (phosphoacceptor) domain JV59_28740 SM00448 cheY-homologous receiver domain JV59_28740 SM00862 Transcriptional regulatory protein, C terminal JV59_28785 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_28785 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_28810 SM00491 JV59_28810 JV59_28825 SM00729 Elongator protein 3, MiaB family, Radical SAM JV59_28825 SM00876 Biotin and Thiamin Synthesis associated domain JV59_28910 SM00528 Domain in histone-like proteins of HNS family JV59_28970 SM01131 JV59_28970 JV59_28985 SM00382 ATPases associated with a variety of cellular activities JV59_28990 SM00382 ATPases associated with a variety of cellular activities JV59_29010 SM00382 ATPases associated with a variety of cellular activities JV59_29065 SM00155 Phospholipase D. Active site motifs. JV59_29090 SM00382 ATPases associated with a variety of cellular activities JV59_29145 SM00387 Histidine kinase-like ATPases JV59_29145 SM00448 cheY-homologous receiver domain JV59_29150 SM00387 Histidine kinase-like ATPases JV59_29150 SM00448 cheY-homologous receiver domain JV59_29160 SM00411 bacterial (prokaryotic) histone like domain JV59_29170 SM00841 Elongation factor P, C-terminal JV59_29170 SM01185 JV59_29170 JV59_29180 SM00458 Ricin-type beta-trefoil JV59_29200 SM00421 helix_turn_helix, Lux Regulon JV59_29200 SM00448 cheY-homologous receiver domain JV59_29205 SM00278 Helix-hairpin-helix DNA-binding motif class 1 JV59_29205 SM00465 GIY-YIG type nucleases (URI domain) JV59_29270 SM00873 B3/4 domain JV59_29270 SM00874 tRNA synthetase B5 domain JV59_29270 SM00896 Ferredoxin-fold anticodon binding domain JV59_29340 SM00354 helix_turn _helix lactose operon repressor JV59_29350 SM00640 Glycosyl hydrolases family 32 JV59_29360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_29360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_29370 SM00052 Putative diguanylate phosphodiesterase JV59_29380 SM00354 helix_turn _helix lactose operon repressor JV59_29420 SM00382 ATPases associated with a variety of cellular activities JV59_29560 SM00882 Coenzyme A transferase JV59_29565 SM00882 Coenzyme A transferase JV59_29665 SM00448 cheY-homologous receiver domain JV59_29675 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) JV59_29675 SM00091 PAS domain JV59_29675 SM00448 cheY-homologous receiver domain JV59_29680 SM00387 Histidine kinase-like ATPases JV59_29680 SM00388 His Kinase A (phosphoacceptor) domain JV59_29680 SM00448 cheY-homologous receiver domain JV59_29705 SM00448 cheY-homologous receiver domain JV59_29705 SM00862 Transcriptional regulatory protein, C terminal JV59_29710 SM00388 His Kinase A (phosphoacceptor) domain JV59_29890 SM00052 Putative diguanylate phosphodiesterase JV59_29890 SM00267 diguanylate cyclase JV59_30100 SM00640 Glycosyl hydrolases family 32 JV59_30110 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_30110 SM00866 JV59_30110 JV59_30130 SM00862 Transcriptional regulatory protein, C terminal JV59_30150 SM00862 Transcriptional regulatory protein, C terminal JV59_30170 SM00387 Histidine kinase-like ATPases JV59_30175 SM00448 cheY-homologous receiver domain JV59_30175 SM00862 Transcriptional regulatory protein, C terminal JV59_30185 SM00487 DEAD-like helicases superfamily JV59_30185 SM00490 helicase superfamily c-terminal domain JV59_30190 SM00363 S4 RNA-binding domain JV59_30215 SM00382 ATPases associated with a variety of cellular activities JV59_30275 SM00852 Probable molybdopterin binding domain JV59_30305 SM00434 DNA Topoisomerase IV JV59_30310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_30310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_30335 SM00342 helix_turn_helix, arabinose operon control protein JV59_30360 SM00849 Metallo-beta-lactamase superfamily JV59_30365 SM00448 cheY-homologous receiver domain JV59_30365 SM00862 Transcriptional regulatory protein, C terminal JV59_30370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_30370 SM00387 Histidine kinase-like ATPases JV59_30370 SM00388 His Kinase A (phosphoacceptor) domain JV59_30415 SM00091 PAS domain JV59_30415 SM00387 Histidine kinase-like ATPases JV59_30420 SM00448 cheY-homologous receiver domain JV59_30425 SM00062 Bacterial periplasmic substrate-binding proteins JV59_30440 SM00267 diguanylate cyclase JV59_30445 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_30520 SM00470 ParB-like nuclease domain JV59_30535 SM00448 cheY-homologous receiver domain JV59_30535 SM00862 Transcriptional regulatory protein, C terminal JV59_30540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_30540 SM00387 Histidine kinase-like ATPases JV59_30540 SM00388 His Kinase A (phosphoacceptor) domain JV59_30575 SM00862 Transcriptional regulatory protein, C terminal JV59_30590 SM00382 ATPases associated with a variety of cellular activities JV59_30605 SM00382 ATPases associated with a variety of cellular activities JV59_30610 SM00923 MbtH-like protein JV59_30615 SM00823 Phosphopantetheine attachment site JV59_30615 SM00824 Thioesterase JV59_30625 SM01006 Siderophore biosynthesis protein domain JV59_30700 SM00382 ATPases associated with a variety of cellular activities JV59_30700 SM00448 cheY-homologous receiver domain JV59_30705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_30705 SM00387 Histidine kinase-like ATPases JV59_30705 SM00388 His Kinase A (phosphoacceptor) domain JV59_30705 SM00448 cheY-homologous receiver domain JV59_30775 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_30785 SM01144 JV59_30785 JV59_30800 SM00327 von Willebrand factor (vWF) type A domain JV59_30820 SM00852 Probable molybdopterin binding domain JV59_30830 SM00382 ATPases associated with a variety of cellular activities JV59_30845 SM00382 ATPases associated with a variety of cellular activities JV59_30845 SM00448 cheY-homologous receiver domain JV59_30850 SM00387 Histidine kinase-like ATPases JV59_30850 SM00388 His Kinase A (phosphoacceptor) domain JV59_30875 SM00382 ATPases associated with a variety of cellular activities JV59_30945 SM00849 Metallo-beta-lactamase superfamily JV59_30960 SM00867 YceI-like domain JV59_30980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_30980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_31015 SM00926 Molybdopterin oxidoreductase Fe4S4 domain JV59_31045 SM00267 diguanylate cyclase JV59_31065 SM00382 ATPases associated with a variety of cellular activities JV59_31090 SM00100 Cyclic nucleotide-monophosphate binding domain JV59_31090 SM00419 helix_turn_helix, cAMP Regulatory protein JV59_31165 SM00421 helix_turn_helix, Lux Regulon JV59_31165 SM00448 cheY-homologous receiver domain JV59_31175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_31175 SM00387 Histidine kinase-like ATPases JV59_31175 SM00388 His Kinase A (phosphoacceptor) domain JV59_31175 SM00448 cheY-homologous receiver domain JV59_31255 SM00849 Metallo-beta-lactamase superfamily JV59_31280 SM00342 helix_turn_helix, arabinose operon control protein JV59_31340 SM00382 ATPases associated with a variety of cellular activities JV59_31375 SM00458 Ricin-type beta-trefoil JV59_31400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_31400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_31405 SM01005 Alanine racemase, C-terminal domain JV59_31645 SM00382 ATPases associated with a variety of cellular activities JV59_31690 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. JV59_31690 SM00245 tail specific protease JV59_31695 SM00945 ProQ/FINO family JV59_31705 SM00382 ATPases associated with a variety of cellular activities JV59_31725 SM00316 Ribosomal protein S1-like RNA-binding domain JV59_31760 SM00062 Bacterial periplasmic substrate-binding proteins JV59_31775 SM00382 ATPases associated with a variety of cellular activities JV59_31795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_31800 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase JV59_31805 SM00327 von Willebrand factor (vWF) type A domain JV59_31870 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_31870 SM00895 JV59_31870 JV59_31935 SM00382 ATPases associated with a variety of cellular activities JV59_31935 SM01086 C-terminal, D2-small domain, of ClpB protein JV59_31980 SM00220 Serine/Threonine protein kinases, catalytic domain JV59_31985 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_32025 SM00052 Putative diguanylate phosphodiesterase JV59_32050 SM00028 Tetratricopeptide repeats JV59_32085 SM00382 ATPases associated with a variety of cellular activities JV59_32105 SM00267 diguanylate cyclase JV59_32120 SM00382 ATPases associated with a variety of cellular activities JV59_32140 SM00855 Phosphoglycerate mutase family JV59_32160 SM00903 Flavin reductase like domain JV59_32175 SM00028 Tetratricopeptide repeats JV59_32370 SM00530 Helix-turn-helix XRE-family like proteins JV59_32375 SM00530 Helix-turn-helix XRE-family like proteins JV59_32425 SM00479 JV59_32425 JV59_32445 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_32485 SM01022 JV59_32485 JV59_32500 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_32500 SM00866 JV59_32500 JV59_32545 SM00671 Sel1-like repeats. JV59_32890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_32890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_32900 SM00421 helix_turn_helix, Lux Regulon JV59_32900 SM00448 cheY-homologous receiver domain JV59_32905 SM00387 Histidine kinase-like ATPases JV59_32905 SM01049 JV59_32905 JV59_32935 SM00849 Metallo-beta-lactamase superfamily JV59_32980 SM00267 diguanylate cyclase JV59_32985 SM01034 Sensors of blue-light using FAD JV59_33005 SM00091 PAS domain JV59_33005 SM00382 ATPases associated with a variety of cellular activities JV59_33035 SM00387 Histidine kinase-like ATPases JV59_33035 SM00388 His Kinase A (phosphoacceptor) domain JV59_33035 SM00448 cheY-homologous receiver domain JV59_33060 SM00052 Putative diguanylate phosphodiesterase JV59_33075 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_33075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_33090 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_33100 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_33120 SM00487 DEAD-like helicases superfamily JV59_33120 SM00490 helicase superfamily c-terminal domain JV59_33125 SM00919 Malic enzyme, NAD binding domain JV59_33125 SM01274 JV59_33125 JV59_33180 SM00382 ATPases associated with a variety of cellular activities JV59_33185 SM00382 ATPases associated with a variety of cellular activities JV59_33205 SM00363 S4 RNA-binding domain JV59_33210 SM00052 Putative diguanylate phosphodiesterase JV59_33210 SM00267 diguanylate cyclase JV59_33210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_33220 SM00481 DNA polymerase alpha chain like domain JV59_33295 SM01321 JV59_33295 JV59_33375 SM00342 helix_turn_helix, arabinose operon control protein JV59_33390 SM00382 ATPases associated with a variety of cellular activities JV59_33390 SM00487 DEAD-like helicases superfamily JV59_33390 SM00490 helicase superfamily c-terminal domain JV59_33390 SM00847 Helicase associated domain (HA2) Add an annotation JV59_33420 SM00479 JV59_33420 JV59_33470 SM00342 helix_turn_helix, arabinose operon control protein JV59_33495 SM00342 helix_turn_helix, arabinose operon control protein JV59_33500 SM00342 helix_turn_helix, arabinose operon control protein JV59_33510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_33555 SM00347 helix_turn_helix multiple antibiotic resistance protein JV59_33585 SM00052 Putative diguanylate phosphodiesterase JV59_33590 SM00729 Elongator protein 3, MiaB family, Radical SAM JV59_33595 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_33595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_33610 SM00387 Histidine kinase-like ATPases JV59_33615 SM00448 cheY-homologous receiver domain JV59_33730 SM01022 JV59_33730 JV59_33775 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_33795 SM00763 PrkA AAA domain JV59_33825 SM00382 ATPases associated with a variety of cellular activities JV59_33830 SM00849 Metallo-beta-lactamase superfamily JV59_33845 SM00382 ATPases associated with a variety of cellular activities JV59_33860 SM00487 DEAD-like helicases superfamily JV59_33860 SM00490 helicase superfamily c-terminal domain JV59_33860 SM00982 JV59_33860 JV59_33860 SM01058 CarD-like/TRCF domain JV59_33915 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_33915 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_33925 SM00345 helix_turn_helix gluconate operon transcriptional repressor JV59_33940 SM00843 JV59_33940 JV59_33945 SM00344 helix_turn_helix ASNC type JV59_33950 SM01002 Alanine dehydrogenase/PNT, C-terminal domain JV59_33950 SM01003 Alanine dehydrogenase/PNT, N-terminal domain JV59_33970 SM00267 diguanylate cyclase JV59_33980 SM00382 ATPases associated with a variety of cellular activities JV59_33985 SM00382 ATPases associated with a variety of cellular activities JV59_34015 SM00028 Tetratricopeptide repeats JV59_34015 SM00267 diguanylate cyclase JV59_34030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_34030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_34045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_34045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_34050 SM00495 Chitin-binding domain type 3 JV59_34055 SM00244 prohibitin homologues JV59_34075 SM00382 ATPases associated with a variety of cellular activities JV59_34155 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins JV59_34160 SM01049 JV59_34160 JV59_34225 SM00346 helix_turn_helix isocitrate lyase regulation JV59_34255 SM00062 Bacterial periplasmic substrate-binding proteins JV59_34255 SM00267 diguanylate cyclase JV59_34290 SM00344 helix_turn_helix ASNC type JV59_34305 SM00978 JV59_34305 JV59_34315 SM00563 Phosphate acyltransferases JV59_34330 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain JV59_34355 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_34360 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins JV59_34360 SM00495 Chitin-binding domain type 3 JV59_34360 SM00636 JV59_34360 JV59_34370 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_34380 SM01144 JV59_34380 JV59_34390 SM00487 DEAD-like helicases superfamily JV59_34390 SM00490 helicase superfamily c-terminal domain JV59_34410 SM00481 DNA polymerase alpha chain like domain JV59_34415 SM00260 Two component signalling adaptor domain JV59_34415 SM00448 cheY-homologous receiver domain JV59_34485 SM00825 Beta-ketoacyl synthase JV59_34495 SM00822 JV59_34495 JV59_34500 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. JV59_34530 SM00363 S4 RNA-binding domain JV59_34535 SM00316 Ribosomal protein S1-like RNA-binding domain JV59_34545 SM00474 3'-5' exonuclease JV59_34575 SM00487 DEAD-like helicases superfamily JV59_34575 SM00491 JV59_34575 JV59_34600 SM00870 JV59_34600 JV59_34615 SM00382 ATPases associated with a variety of cellular activities JV59_34640 SM00267 diguanylate cyclase JV59_34645 SM00382 ATPases associated with a variety of cellular activities JV59_34680 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family JV59_34685 SM00028 Tetratricopeptide repeats JV59_34695 SM00411 bacterial (prokaryotic) histone like domain JV59_34700 SM00316 Ribosomal protein S1-like RNA-binding domain JV59_34720 SM00411 bacterial (prokaryotic) histone like domain JV59_34725 SM00382 ATPases associated with a variety of cellular activities JV59_34725 SM00464 Found in ATP-dependent protease La (LON) JV59_34730 SM00382 ATPases associated with a variety of cellular activities JV59_34730 SM00994 ClpX C4-type zinc finger JV59_34730 SM01086 C-terminal, D2-small domain, of ClpB protein JV59_34745 SM00387 Histidine kinase-like ATPases JV59_34745 SM00388 His Kinase A (phosphoacceptor) domain JV59_34750 SM00382 ATPases associated with a variety of cellular activities JV59_34750 SM00448 cheY-homologous receiver domain JV59_34775 SM00382 ATPases associated with a variety of cellular activities JV59_34790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_34790 SM00387 Histidine kinase-like ATPases JV59_34795 SM00448 cheY-homologous receiver domain JV59_34795 SM00862 Transcriptional regulatory protein, C terminal JV59_34820 SM00493 JV59_34820 JV59_34830 SM00382 ATPases associated with a variety of cellular activities JV59_34850 SM00448 cheY-homologous receiver domain JV59_34935 SM00382 ATPases associated with a variety of cellular activities JV59_34945 SM00260 Two component signalling adaptor domain JV59_34950 SM00260 Two component signalling adaptor domain JV59_34960 SM00448 cheY-homologous receiver domain JV59_34965 SM00073 Histidine Phosphotransfer domain JV59_34965 SM00260 Two component signalling adaptor domain JV59_34965 SM00387 Histidine kinase-like ATPases JV59_34965 SM01231 JV59_34965 JV59_34975 SM00448 cheY-homologous receiver domain JV59_34990 SM00382 ATPases associated with a variety of cellular activities JV59_34990 SM00962 SRP54-type protein, GTPase domain JV59_35000 SM00855 Phosphoglycerate mutase family JV59_35015 SM00836 DALR anticodon binding domain JV59_35015 SM01016 Arginyl tRNA synthetase N terminal dom JV59_35035 SM00899 JV59_35035 JV59_35040 SM00342 helix_turn_helix, arabinose operon control protein JV59_35050 SM00382 ATPases associated with a variety of cellular activities JV59_35090 SM00859 Semialdehyde dehydrogenase, NAD binding domain JV59_35100 SM00825 Beta-ketoacyl synthase JV59_35155 SM00463 Small MutS-related domain JV59_35210 SM00382 ATPases associated with a variety of cellular activities JV59_35235 SM00382 ATPases associated with a variety of cellular activities JV59_35235 SM00448 cheY-homologous receiver domain JV59_35240 SM00091 PAS domain JV59_35240 SM00387 Histidine kinase-like ATPases JV59_35240 SM00388 His Kinase A (phosphoacceptor) domain JV59_35245 SM00382 ATPases associated with a variety of cellular activities JV59_35330 SM00028 Tetratricopeptide repeats JV59_35380 SM00028 Tetratricopeptide repeats JV59_35385 SM00267 diguanylate cyclase JV59_35395 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs JV59_35395 SM00475 5'-3' exonuclease JV59_35400 SM00477 DNA/RNA non-specific endonuclease JV59_35400 SM00892 DNA/RNA non-specific endonuclease JV59_35425 SM00981 JV59_35425 JV59_35450 SM00861 Transketolase, pyrimidine binding domain JV59_35480 SM00881 CoA binding domain JV59_35495 SM00861 Transketolase, pyrimidine binding domain JV59_35615 SM01081 Putative carbohydrate binding domain JV59_35635 SM00463 Small MutS-related domain JV59_35640 SM00363 S4 RNA-binding domain JV59_35680 SM00062 Bacterial periplasmic substrate-binding proteins JV59_35720 SM00271 DnaJ molecular chaperone homology domain JV59_35775 SM00487 DEAD-like helicases superfamily JV59_35810 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) JV59_35810 SM00091 PAS domain JV59_35810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_35840 SM00563 Phosphate acyltransferases JV59_35845 SM00260 Two component signalling adaptor domain JV59_35845 SM00448 cheY-homologous receiver domain JV59_35885 SM00495 Chitin-binding domain type 3 JV59_35895 SM00116 Domain in cystathionine beta-synthase and other proteins. JV59_35895 SM01240 JV59_35895 JV59_35910 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. JV59_35910 SM00267 diguanylate cyclase JV59_35920 SM00382 ATPases associated with a variety of cellular activities JV59_35925 SM00564 beta-propeller repeat JV59_35945 SM00530 Helix-turn-helix XRE-family like proteins JV59_35965 SM00925 MltA specific insert domain JV59_36090 SM00091 PAS domain JV59_36090 SM00387 Histidine kinase-like ATPases JV59_36090 SM00388 His Kinase A (phosphoacceptor) domain JV59_36095 SM00448 cheY-homologous receiver domain JV59_36095 SM00862 Transcriptional regulatory protein, C terminal JV59_36140 SM01323 JV59_36140 JV59_36155 SM00116 Domain in cystathionine beta-synthase and other proteins. JV59_36200 SM00342 helix_turn_helix, arabinose operon control protein JV59_36220 SM00354 helix_turn _helix lactose operon repressor JV59_36245 SM00354 helix_turn _helix lactose operon repressor JV59_36250 SM01038 Beta galactosidase small chain JV59_36300 SM00342 helix_turn_helix, arabinose operon control protein JV59_36320 SM00028 Tetratricopeptide repeats JV59_36355 SM00858 JV59_36355 JV59_36360 SM00382 ATPases associated with a variety of cellular activities JV59_36380 SM00342 helix_turn_helix, arabinose operon control protein JV59_36405 SM00838 Elongation factor G C-terminus JV59_36405 SM00889 Elongation factor G, domain IV JV59_36410 SM00562 JV59_36410 JV59_36435 SM00271 DnaJ molecular chaperone homology domain JV59_36505 SM00382 ATPases associated with a variety of cellular activities JV59_36505 SM01086 C-terminal, D2-small domain, of ClpB protein JV59_36515 SM00363 S4 RNA-binding domain JV59_36525 SM00062 Bacterial periplasmic substrate-binding proteins JV59_36535 SM00830 Chorismate mutase type II JV59_36545 SM00052 Putative diguanylate phosphodiesterase JV59_36545 SM00267 diguanylate cyclase JV59_36565 SM00382 ATPases associated with a variety of cellular activities JV59_36580 SM00830 Chorismate mutase type II JV59_36595 SM00448 cheY-homologous receiver domain JV59_36595 SM00850 LytTr DNA-binding domain JV59_36660 SM00904 Riboflavin kinase JV59_36675 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor JV59_36710 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. JV59_36720 SM00927 DNA mismatch repair enzyme MutH JV59_36740 SM00382 ATPases associated with a variety of cellular activities JV59_36750 SM00347 helix_turn_helix multiple antibiotic resistance protein JV59_36755 SM00028 Tetratricopeptide repeats JV59_36760 SM00316 Ribosomal protein S1-like RNA-binding domain JV59_36760 SM00322 K homology RNA-binding domain JV59_36765 SM01387 JV59_36765 JV59_36820 SM00448 cheY-homologous receiver domain JV59_36820 SM00862 Transcriptional regulatory protein, C terminal JV59_36835 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). JV59_36835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_36845 SM00880 JV59_36845 JV59_36845 SM01118 JV59_36845 JV59_36860 SM00287 Bacterial SH3 domain homologues JV59_36870 SM00382 ATPases associated with a variety of cellular activities JV59_36895 SM01192 JV59_36895 JV59_36895 SM01193 JV59_36895 JV59_36910 SM00954 Region found in RelA / SpoT proteins JV59_36920 SM00073 Histidine Phosphotransfer domain JV59_36920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_36920 SM00387 Histidine kinase-like ATPases JV59_36920 SM00388 His Kinase A (phosphoacceptor) domain JV59_36920 SM00448 cheY-homologous receiver domain JV59_36955 SM00838 Elongation factor G C-terminus JV59_37080 SM00014 Acid phosphatase homologues JV59_37085 SM00014 Acid phosphatase homologues JV59_37090 SM00917 LeuA allosteric (dimerisation) domain JV59_37095 SM01329 JV59_37095 JV59_37155 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_37200 SM00829 Enoylreductase JV59_37260 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain JV59_37270 SM00382 ATPases associated with a variety of cellular activities JV59_37280 SM00533 DNA-binding domain of DNA mismatch repair MUTS family JV59_37280 SM00534 ATPase domain of DNA mismatch repair MUTS family JV59_37340 SM00487 DEAD-like helicases superfamily JV59_37340 SM00490 helicase superfamily c-terminal domain JV59_37345 SM00670 Large family of predicted nucleotide-binding domains JV59_37420 SM00563 Phosphate acyltransferases JV59_37455 SM00382 ATPases associated with a variety of cellular activities JV59_37485 SM00382 ATPases associated with a variety of cellular activities JV59_37515 SM00924 MgtE intracellular N domain JV59_37705 SM00448 cheY-homologous receiver domain JV59_37705 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_37710 SM00387 Histidine kinase-like ATPases JV59_37710 SM00388 His Kinase A (phosphoacceptor) domain JV59_37710 SM00448 cheY-homologous receiver domain JV59_37790 SM00662 RNA polymerases D JV59_37795 SM00363 S4 RNA-binding domain JV59_37795 SM01390 JV59_37795 JV59_37860 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. JV59_37880 SM00322 K homology RNA-binding domain JV59_37895 SM01382 JV59_37895 JV59_37895 SM01383 JV59_37895 JV59_37915 SM01403 JV59_37915 JV59_37920 SM00967 RNA 2'-O ribose methyltransferase substrate binding JV59_37925 SM00316 Ribosomal protein S1-like RNA-binding domain JV59_37925 SM00357 Cold shock protein domain JV59_37925 SM00955 JV59_37925 JV59_37935 SM00671 Sel1-like repeats. JV59_37940 SM00788 Adenylosuccinate synthetase JV59_37970 SM00382 ATPases associated with a variety of cellular activities JV59_37995 SM00100 Cyclic nucleotide-monophosphate binding domain JV59_37995 SM00419 helix_turn_helix, cAMP Regulatory protein JV59_38000 SM01150 JV59_38000 JV59_38125 SM00421 helix_turn_helix, Lux Regulon JV59_38125 SM00448 cheY-homologous receiver domain JV59_38150 SM00387 Histidine kinase-like ATPases JV59_38150 SM00388 His Kinase A (phosphoacceptor) domain JV59_38150 SM00448 cheY-homologous receiver domain JV59_38165 SM00479 JV59_38165 JV59_38180 SM00878 Biotin carboxylase C-terminal domain JV59_38200 SM00267 diguanylate cyclase JV59_38205 SM00422 helix_turn_helix, mercury resistance JV59_38210 SM00798 AICARFT/IMPCHase bienzyme JV59_38210 SM00851 MGS-like domain JV59_38215 SM01209 JV59_38215 JV59_38215 SM01210 JV59_38215 JV59_38225 SM00411 bacterial (prokaryotic) histone like domain JV59_38240 SM00986 Uracil DNA glycosylase superfamily JV59_38240 SM00987 UreE urease accessory protein, C-terminal domain JV59_38255 SM00971 Serine acetyltransferase, N-terminal JV59_38270 SM00450 Rhodanese Homology Domain JV59_38340 SM00382 ATPases associated with a variety of cellular activities JV59_38340 SM01086 C-terminal, D2-small domain, of ClpB protein JV59_38355 SM00354 helix_turn _helix lactose operon repressor JV59_38360 SM00487 DEAD-like helicases superfamily JV59_38360 SM00490 helicase superfamily c-terminal domain JV59_38370 SM00919 Malic enzyme, NAD binding domain JV59_38370 SM01274 JV59_38370 JV59_38420 SM00883 Chaperonin 10 Kd subunit JV59_38460 SM00155 Phospholipase D. Active site motifs. JV59_38530 SM00858 JV59_38530 JV59_38645 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain JV59_38645 SM01232 JV59_38645 JV59_38720 SM00912 haemagglutination activity domain JV59_38760 SM00965 Secretin and TonB N terminus short domain JV59_38775 SM00072 Guanylate kinase homologues. JV59_38780 SM01409 JV59_38780 JV59_38785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. JV59_38785 SM00954 Region found in RelA / SpoT proteins JV59_38795 SM00487 DEAD-like helicases superfamily JV59_38795 SM00490 helicase superfamily c-terminal domain JV59_38830 SM00316 Ribosomal protein S1-like RNA-binding domain JV59_38830 SM00732 Likely ribonuclease with RNase H fold. JV59_38845 SM00448 cheY-homologous receiver domain JV59_38845 SM00862 Transcriptional regulatory protein, C terminal JV59_38850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_38850 SM00387 Histidine kinase-like ATPases JV59_38850 SM00388 His Kinase A (phosphoacceptor) domain JV59_38900 SM00382 ATPases associated with a variety of cellular activities JV59_38915 SM00363 S4 RNA-binding domain JV59_38960 SM01230 JV59_38960 JV59_38965 SM00091 PAS domain JV59_38965 SM00387 Histidine kinase-like ATPases JV59_38965 SM00388 His Kinase A (phosphoacceptor) domain JV59_38970 SM00382 ATPases associated with a variety of cellular activities JV59_38970 SM00448 cheY-homologous receiver domain JV59_38975 SM00052 Putative diguanylate phosphodiesterase JV59_38975 SM00267 diguanylate cyclase JV59_38975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain JV59_39045 SM01001 AIR carboxylase JV59_39135 SM00563 Phosphate acyltransferases JV59_39145 SM00382 ATPases associated with a variety of cellular activities JV59_39175 SM00829 Enoylreductase JV59_39210 SM00836 DALR anticodon binding domain JV59_39225 SM00387 Histidine kinase-like ATPases JV59_39225 SM00433 TopoisomeraseII JV59_39235 SM00480 DNA polymerase III beta subunit JV59_39240 SM00382 ATPases associated with a variety of cellular activities JV59_39240 SM00760 Bacterial dnaA protein helix-turn-helix domain JV59_39245 SM00062 Bacterial periplasmic substrate-binding proteins JV59_39245 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. JV59_39255 SM00382 ATPases associated with a variety of cellular activities JV59_39285 SM01228 JV59_39285 JV59_39300 SM00470 ParB-like nuclease domain JV59_39340 SM00382 ATPases associated with a variety of cellular activities JV59_39360 SM00062 Bacterial periplasmic substrate-binding proteins JV59_39375 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. JV59_39375 SM00267 diguanylate cyclase JV59_39485 SM00876 Biotin and Thiamin Synthesis associated domain JV59_39510 SM00344 helix_turn_helix ASNC type JV59_39515 SM00052 Putative diguanylate phosphodiesterase JV59_39515 SM00091 PAS domain JV59_39515 SM00267 diguanylate cyclase JV59_39555 SM00999 Aerolysin toxin JV59_39565 SM00862 Transcriptional regulatory protein, C terminal JV59_39575 SM00342 helix_turn_helix, arabinose operon control protein JV59_39630 SM01004 Delta-aminolevulinic acid dehydratase JV59_39640 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs JV59_39640 SM00474 3'-5' exonuclease JV59_39640 SM00475 5'-3' exonuclease JV59_39640 SM00482 DNA polymerase A domain JV59_39670 SM00729 Elongator protein 3, MiaB family, Radical SAM JV59_39740 SM00382 ATPases associated with a variety of cellular activities JV59_39770 SM00448 cheY-homologous receiver domain JV59_39865 SM00342 helix_turn_helix, arabinose operon control protein JV59_39875 SM00341 Helicase and RNase D C-terminal JV59_39875 SM00487 DEAD-like helicases superfamily JV59_39875 SM00490 helicase superfamily c-terminal domain JV59_39875 SM00956 JV59_39875 JV59_39895 SM00487 DEAD-like helicases superfamily JV59_39895 SM00490 helicase superfamily c-terminal domain JV59_39905 SM00357 Cold shock protein domain JV59_39905 SM00382 ATPases associated with a variety of cellular activities JV59_39905 SM00959 Rho termination factor, N-terminal domain JV59_39975 SM01219 JV59_39975 JV59_40010 SM00052 Putative diguanylate phosphodiesterase JV59_40010 SM00267 diguanylate cyclase JV59_40010 SM00897 FIST N domain JV59_40010 SM01204 JV59_40010 JV59_40015 SM01144 JV59_40015 JV59_40045 SM00052 Putative diguanylate phosphodiesterase JV59_40050 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor JV59_40055 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JV59_40060 SM00404 Protein tyrosine phosphatase, catalytic domain motif JV59_40115 SM00382 ATPases associated with a variety of cellular activities JV59_40115 SM00962 SRP54-type protein, GTPase domain JV59_40115 SM00963 SRP54-type protein, helical bundle domain JV59_40120 SM00382 ATPases associated with a variety of cellular activities JV59_40135 SM00450 Rhodanese Homology Domain JV59_40160 SM00563 Phosphate acyltransferases JV59_40220 SM00360 RNA recognition motif JV59_40630 SM00530 Helix-turn-helix XRE-family like proteins JV59_40715 SM00530 Helix-turn-helix XRE-family like proteins