locus-tag class description CTT30_00010 PF00308 Bacterial dnaA protein CTT30_00010 PF08299 Bacterial dnaA protein helix-turn-helix CTT30_00010 PF11638 DnaA N-terminal domain CTT30_00015 PF00712 DNA polymerase III beta subunit, N-terminal domain CTT30_00015 PF02767 DNA polymerase III beta subunit, central domain CTT30_00015 PF02768 DNA polymerase III beta subunit, C-terminal domain CTT30_00020 PF02463 RecF/RecN/SMC N terminal domain CTT30_00025 PF01751 Toprim domain CTT30_00025 PF18053 DNA gyrase B subunit insert domain CTT30_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_00025 PF00204 DNA gyrase B CTT30_00025 PF00986 DNA gyrase B subunit, carboxyl terminus CTT30_00030 PF00011 Hsp20/alpha crystallin family CTT30_00035 PF00155 Aminotransferase class I and II CTT30_00040 PF05746 DALR anticodon binding domain CTT30_00040 PF02092 Glycyl-tRNA synthetase beta subunit CTT30_00045 PF02091 Glycyl-tRNA synthetase alpha subunit CTT30_00050 PF01169 Uncharacterized protein family UPF0016 CTT30_00060 PF01206 Sulfurtransferase TusA CTT30_00070 PF03466 LysR substrate binding domain CTT30_00070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_00075 PF00107 Zinc-binding dehydrogenase CTT30_00075 PF08240 Alcohol dehydrogenase GroES-like domain CTT30_00080 PF00291 Pyridoxal-phosphate dependent enzyme CTT30_00080 PF00585 C-terminal regulatory domain of Threonine dehydratase CTT30_00085 PF00920 Dehydratase family CTT30_00090 PF01063 Amino-transferase class IV CTT30_00100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CTT30_00100 PF00205 Thiamine pyrophosphate enzyme, central domain CTT30_00100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CTT30_00105 PF01078 Magnesium chelatase, subunit ChlI CTT30_00105 PF13335 Magnesium chelatase, subunit ChlI C-terminal CTT30_00125 PF00589 Phage integrase family CTT30_00125 PF02899 Phage integrase, N-terminal SAM-like domain CTT30_00140 PF00004 ATPase family associated with various cellular activities (AAA) CTT30_00145 PF04851 Type III restriction enzyme, res subunit CTT30_00210 PF01553 Acyltransferase CTT30_00215 PF01323 DSBA-like thioredoxin domain CTT30_00220 PF01636 Phosphotransferase enzyme family CTT30_00225 PF13746 4Fe-4S dicluster domain CTT30_00225 PF12801 4Fe-4S binding domain CTT30_00225 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CTT30_00230 PF06288 Protein of unknown function (DUF1040) CTT30_00240 PF07070 SpoOM protein CTT30_00245 PF03006 Haemolysin-III related CTT30_00255 PF02386 Cation transport protein CTT30_00260 PF02080 TrkA-C domain CTT30_00260 PF02254 TrkA-N domain CTT30_00265 PF01189 16S rRNA methyltransferase RsmB/F CTT30_00265 PF01029 NusB family CTT30_00270 PF00551 Formyl transferase CTT30_00270 PF02911 Formyl transferase, C-terminal domain CTT30_00275 PF01327 Polypeptide deformylase CTT30_00280 PF02481 DNA recombination-mediator protein A CTT30_00280 PF17782 DprA winged helix domain CTT30_00285 PF04361 Protein of unknown function (DUF494) CTT30_00290 PF01396 Topoisomerase DNA binding C4 zinc finger CTT30_00295 PF02222 ATP-grasp domain CTT30_00295 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CTT30_00300 PF00731 AIR carboxylase CTT30_00305 PF01300 Telomere recombination CTT30_00310 PF01218 Coproporphyrinogen III oxidase CTT30_00315 PF08501 Shikimate dehydrogenase substrate binding domain CTT30_00315 PF01488 Shikimate / quinate 5-dehydrogenase CTT30_00315 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CTT30_00320 PF07369 Protein of unknown function (DUF1488) CTT30_00325 PF00132 Bacterial transferase hexapeptide (six repeats) CTT30_00400 PF00962 Adenosine/AMP deaminase CTT30_00405 PF13188 PAS domain CTT30_00405 PF00563 EAL domain CTT30_00405 PF00990 Diguanylate cyclase, GGDEF domain CTT30_00405 PF03707 Bacterial signalling protein N terminal repeat CTT30_00410 PF00158 Sigma-54 interaction domain CTT30_00410 PF00072 Response regulator receiver domain CTT30_00410 PF02954 Bacterial regulatory protein, Fis family CTT30_00415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_00415 PF00512 His Kinase A (phospho-acceptor) domain CTT30_00415 PF00989 PAS fold CTT30_00420 PF00120 Glutamine synthetase, catalytic domain CTT30_00420 PF03951 Glutamine synthetase, beta-Grasp domain CTT30_00425 PF00009 Elongation factor Tu GTP binding domain CTT30_00425 PF03144 Elongation factor Tu domain 2 CTT30_00425 PF00679 Elongation factor G C-terminus CTT30_00440 PF03631 Virulence factor BrkB CTT30_00445 PF02580 D-Tyr-tRNA(Tyr) deacylase CTT30_00450 PF09500 Putative thioesterase (yiiD_Cterm) CTT30_00450 PF00583 Acetyltransferase (GNAT) family CTT30_00460 PF01293 Phosphoenolpyruvate carboxykinase CTT30_00465 PF01430 Hsp33 protein CTT30_00470 PF01479 S4 domain CTT30_00475 PF11356 Type II secretion system protein C CTT30_00480 PF00263 Bacterial type II and III secretion system protein CTT30_00480 PF03958 Bacterial type II/III secretion system short domain CTT30_00485 PF00437 Type II/IV secretion system protein CTT30_00490 PF00482 Type II secretion system (T2SS), protein F CTT30_00495 PF07963 Prokaryotic N-terminal methylation motif CTT30_00495 PF08334 Type II secretion system (T2SS), protein G CTT30_00500 PF12019 Type II transport protein GspH CTT30_00505 PF07963 Prokaryotic N-terminal methylation motif CTT30_00505 PF02501 Type II secretion system (T2SS), protein I CTT30_00510 PF07963 Prokaryotic N-terminal methylation motif CTT30_00510 PF11612 Type II secretion system (T2SS), protein J CTT30_00515 PF03934 Type II secretion system (T2SS), protein K CTT30_00520 PF12693 GspL periplasmic domain CTT30_00520 PF05134 Type II secretion system (T2SS), protein L CTT30_00525 PF04612 Type II secretion system (T2SS), protein M CTT30_00530 PF01203 Type II secretion system (T2SS), protein N CTT30_00535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_00535 PF00512 His Kinase A (phospho-acceptor) domain CTT30_00535 PF00672 HAMP domain CTT30_00540 PF00072 Response regulator receiver domain CTT30_00540 PF00486 Transcriptional regulatory protein, C terminal CTT30_00545 PF01272 Transcription elongation factor, GreA/GreB, C-term CTT30_00545 PF03449 Transcription elongation factor, N-terminal CTT30_00555 PF09371 Tex-like protein N-terminal domain CTT30_00555 PF17674 HHH domain CTT30_00555 PF00575 S1 RNA binding domain CTT30_00555 PF16921 Tex protein YqgF-like domain CTT30_00565 PF00561 alpha/beta hydrolase fold CTT30_00570 PF00156 Phosphoribosyl transferase domain CTT30_00575 PF01106 NifU-like domain CTT30_00575 PF01521 Iron-sulphur cluster biosynthesis CTT30_00580 PF00293 NUDIX domain CTT30_00585 PF00459 Inositol monophosphatase family CTT30_00590 PF00156 Phosphoribosyl transferase domain CTT30_00595 PF03725 3' exoribonuclease family, domain 2 CTT30_00595 PF01138 3' exoribonuclease family, domain 1 CTT30_00600 PF03755 YicC-like family, N-terminal region CTT30_00600 PF08340 Domain of unknown function (DUF1732) CTT30_00605 PF00860 Permease family CTT30_00610 PF00625 Guanylate kinase CTT30_00615 PF01192 RNA polymerase Rpb6 CTT30_00620 PF13291 ACT domain CTT30_00620 PF04607 Region found in RelA / SpoT proteins CTT30_00620 PF02824 TGS domain CTT30_00625 PF12105 SpoU, rRNA methylase, C-terminal CTT30_00625 PF00588 SpoU rRNA Methylase family CTT30_00630 PF00270 DEAD/DEAH box helicase CTT30_00630 PF00271 Helicase conserved C-terminal domain CTT30_00630 PF17191 RecG wedge domain CTT30_00635 PF03279 Bacterial lipid A biosynthesis acyltransferase CTT30_00640 PF03279 Bacterial lipid A biosynthesis acyltransferase CTT30_00645 PF00440 Bacterial regulatory proteins, tetR family CTT30_00650 PF04127 DNA / pantothenate metabolism flavoprotein CTT30_00650 PF02441 Flavoprotein CTT30_00655 PF04002 RadC-like JAB domain CTT30_00660 PF00830 Ribosomal L28 family CTT30_00665 PF00471 Ribosomal protein L33 CTT30_00675 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CTT30_00675 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CTT30_00675 PF06827 Zinc finger found in FPG and IleRS CTT30_00680 PF01467 Cytidylyltransferase-like CTT30_00685 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CTT30_00690 PF00535 Glycosyl transferase family 2 CTT30_00695 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CTT30_00705 PF00175 Oxidoreductase NAD-binding domain CTT30_00705 PF00111 2Fe-2S iron-sulfur cluster binding domain CTT30_00705 PF00970 Oxidoreductase FAD-binding domain CTT30_00710 PF00483 Nucleotidyl transferase CTT30_00715 PF16363 GDP-mannose 4,6 dehydratase CTT30_00720 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CTT30_00725 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CTT30_00750 PF00534 Glycosyl transferases group 1 CTT30_00750 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CTT30_00755 PF04488 Glycosyltransferase sugar-binding region containing DXD motif CTT30_00765 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CTT30_00770 PF00132 Bacterial transferase hexapeptide (six repeats) CTT30_00770 PF12464 Maltose acetyltransferase CTT30_00770 PF14602 Hexapeptide repeat of succinyl-transferase CTT30_00780 PF04932 O-Antigen ligase CTT30_00785 PF00534 Glycosyl transferases group 1 CTT30_00790 PF01370 NAD dependent epimerase/dehydratase family CTT30_00795 PF16363 GDP-mannose 4,6 dehydratase CTT30_00800 PF00483 Nucleotidyl transferase CTT30_00805 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CTT30_00810 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CTT30_00825 PF00664 ABC transporter transmembrane region CTT30_00825 PF00005 ABC transporter CTT30_00830 PF02719 Polysaccharide biosynthesis protein CTT30_00835 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CTT30_00840 PF02350 UDP-N-acetylglucosamine 2-epimerase CTT30_00845 PF03102 NeuB family CTT30_00845 PF08666 SAF domain CTT30_00860 PF00483 Nucleotidyl transferase CTT30_00865 PF02348 Cytidylyltransferase CTT30_00900 PF00535 Glycosyl transferase family 2 CTT30_00920 PF02397 Bacterial sugar transferase CTT30_00925 PF13091 PLD-like domain CTT30_00930 PF08279 HTH domain CTT30_00930 PF03099 Biotin/lipoate A/B protein ligase family CTT30_00930 PF02237 Biotin protein ligase C terminal domain CTT30_00935 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CTT30_00935 PF01565 FAD binding domain CTT30_00945 PF08220 DeoR-like helix-turn-helix domain CTT30_00945 PF00455 DeoR C terminal sensor domain CTT30_00960 PF00166 Chaperonin 10 Kd subunit CTT30_00965 PF00118 TCP-1/cpn60 chaperonin family CTT30_00970 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CTT30_00970 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CTT30_00970 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CTT30_00975 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CTT30_00980 PF06005 Cell division protein ZapB CTT30_00985 PF02219 Methylenetetrahydrofolate reductase CTT30_00990 PF03447 Homoserine dehydrogenase, NAD binding domain CTT30_00990 PF00696 Amino acid kinase family CTT30_00990 PF00742 Homoserine dehydrogenase CTT30_00995 PF01053 Cys/Met metabolism PLP-dependent enzyme CTT30_01000 PF01340 Met Apo-repressor, MetJ CTT30_01005 PF00390 Malic enzyme, N-terminal domain CTT30_01005 PF03949 Malic enzyme, NAD binding domain CTT30_01010 PF01197 Ribosomal protein L31 CTT30_01015 PF00270 DEAD/DEAH box helicase CTT30_01015 PF00271 Helicase conserved C-terminal domain CTT30_01015 PF17764 3′ DNA-binding domain (3′BD) CTT30_01015 PF18074 Primosomal protein N C-terminal domain CTT30_01015 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CTT30_01020 PF00356 Bacterial regulatory proteins, lacI family CTT30_01025 PF05036 Sporulation related domain CTT30_01030 PF00227 Proteasome subunit CTT30_01035 PF00004 ATPase family associated with various cellular activities (AAA) CTT30_01035 PF07724 AAA domain (Cdc48 subfamily) CTT30_01040 PF01609 Transposase DDE domain CTT30_01040 PF13006 Insertion element 4 transposase N-terminal CTT30_01045 PF02313 Fumarate reductase subunit D CTT30_01050 PF02300 Fumarate reductase subunit C CTT30_01055 PF13085 2Fe-2S iron-sulfur cluster binding domain CTT30_01055 PF13183 4Fe-4S dicluster domain CTT30_01060 PF00890 FAD binding domain CTT30_01060 PF02910 Fumarate reductase flavoprotein C-term CTT30_01065 PF00152 tRNA synthetases class II (D, K and N) CTT30_01070 PF06082 Exopolysaccharide biosynthesis protein YbjH CTT30_01075 PF06251 Capsule biosynthesis GfcC CTT30_01080 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF CTT30_01105 PF00581 Rhodanese-like domain CTT30_01110 PF02556 Preprotein translocase subunit SecB CTT30_01115 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CTT30_01115 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CTT30_01120 PF00132 Bacterial transferase hexapeptide (six repeats) CTT30_01120 PF06426 Serine acetyltransferase, N-terminal CTT30_01125 PF03551 Transcriptional regulator PadR-like family CTT30_01125 PF10400 Virulence activator alpha C-term CTT30_01130 PF00311 Phosphoenolpyruvate carboxylase CTT30_01135 PF03167 Uracil DNA glycosylase superfamily CTT30_01140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CTT30_01145 PF04222 Protein of unknown function (DUF416) CTT30_01150 PF01595 Cyclin M transmembrane N-terminal domain CTT30_01150 PF00571 CBS domain CTT30_01155 PF00216 Bacterial DNA-binding protein CTT30_01165 PF02843 Phosphoribosylglycinamide synthetase, C domain CTT30_01165 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CTT30_01165 PF02844 Phosphoribosylglycinamide synthetase, N domain CTT30_01170 PF02142 MGS-like domain CTT30_01170 PF01808 AICARFT/IMPCHase bienzyme CTT30_01180 PF13411 MerR HTH family regulatory protein CTT30_01185 PF08448 PAS fold CTT30_01185 PF00990 Diguanylate cyclase, GGDEF domain CTT30_01190 PF02954 Bacterial regulatory protein, Fis family CTT30_01195 PF01207 Dihydrouridine synthase (Dus) CTT30_01205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTT30_01205 PF00289 Biotin carboxylase, N-terminal domain CTT30_01205 PF02785 Biotin carboxylase C-terminal domain CTT30_01210 PF00364 Biotin-requiring enzyme CTT30_01215 PF01220 Dehydroquinase class II CTT30_01220 PF13193 AMP-binding enzyme C-terminal domain CTT30_01220 PF16177 Acetyl-coenzyme A synthetase N-terminus CTT30_01220 PF00501 AMP-binding enzyme CTT30_01235 PF12832 MFS_1 like family CTT30_01240 PF00512 His Kinase A (phospho-acceptor) domain CTT30_01240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_01240 PF09308 LuxQ, periplasmic CTT30_01240 PF00072 Response regulator receiver domain CTT30_01245 PF00485 Phosphoribulokinase / Uridine kinase family CTT30_01270 PF00009 Elongation factor Tu GTP binding domain CTT30_01270 PF03144 Elongation factor Tu domain 2 CTT30_01270 PF03143 Elongation factor Tu C-terminal domain CTT30_01280 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CTT30_01285 PF00467 KOW motif CTT30_01285 PF02357 Transcription termination factor nusG CTT30_01290 PF00298 Ribosomal protein L11, RNA binding domain CTT30_01290 PF03946 Ribosomal protein L11, N-terminal domain CTT30_01295 PF00687 Ribosomal protein L1p/L10e family CTT30_01300 PF00466 Ribosomal protein L10 CTT30_01305 PF16320 Ribosomal protein L7/L12 dimerisation domain CTT30_01305 PF00542 Ribosomal protein L7/L12 C-terminal domain CTT30_01310 PF04565 RNA polymerase Rpb2, domain 3 CTT30_01310 PF04560 RNA polymerase Rpb2, domain 7 CTT30_01310 PF04563 RNA polymerase beta subunit CTT30_01310 PF10385 RNA polymerase beta subunit external 1 domain CTT30_01310 PF04561 RNA polymerase Rpb2, domain 2 CTT30_01310 PF00562 RNA polymerase Rpb2, domain 6 CTT30_01315 PF00623 RNA polymerase Rpb1, domain 2 CTT30_01315 PF04983 RNA polymerase Rpb1, domain 3 CTT30_01315 PF05000 RNA polymerase Rpb1, domain 4 CTT30_01315 PF04998 RNA polymerase Rpb1, domain 5 CTT30_01315 PF04997 RNA polymerase Rpb1, domain 1 CTT30_01320 PF03605 Anaerobic c4-dicarboxylate membrane transporter CTT30_01325 PF10415 Fumarase C C-terminus CTT30_01325 PF00206 Lyase CTT30_01330 PF04186 FxsA cytoplasmic membrane protein CTT30_01400 PF00117 Glutamine amidotransferase class-I CTT30_01405 PF00202 Aminotransferase class-III CTT30_01410 PF04958 Arginine N-succinyltransferase beta subunit CTT30_01415 PF00171 Aldehyde dehydrogenase family CTT30_01425 PF02666 Phosphatidylserine decarboxylase CTT30_01430 PF03193 RsgA GTPase CTT30_01435 PF00929 Exonuclease CTT30_01485 PF08331 Domain of unknown function (DUF1730) CTT30_01490 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CTT30_01495 PF01520 N-acetylmuramoyl-L-alanine amidase CTT30_01500 PF01119 DNA mismatch repair protein, C-terminal domain CTT30_01500 PF08676 MutL C terminal dimerisation domain CTT30_01510 PF17209 Hfq protein CTT30_01515 PF16360 GTP-binding GTPase Middle Region CTT30_01515 PF13167 GTP-binding GTPase N-terminal CTT30_01515 PF01926 50S ribosome-binding GTPase CTT30_01520 PF01145 SPFH domain / Band 7 family CTT30_01520 PF12221 Bacterial membrane protein N terminal CTT30_01525 PF01145 SPFH domain / Band 7 family CTT30_01530 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CTT30_01535 PF04102 SlyX CTT30_01545 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTT30_01545 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CTT30_01550 PF13309 HTH domain CTT30_01550 PF08348 YheO-like PAS domain CTT30_01555 PF02635 DsrE/DsrF-like family CTT30_01560 PF02635 DsrE/DsrF-like family CTT30_01565 PF04077 DsrH like protein CTT30_01570 PF00164 Ribosomal protein S12/S23 CTT30_01575 PF00177 Ribosomal protein S7p/S5e CTT30_01580 PF00679 Elongation factor G C-terminus CTT30_01580 PF14492 Elongation Factor G, domain II CTT30_01580 PF03764 Elongation factor G, domain IV CTT30_01580 PF00009 Elongation factor Tu GTP binding domain CTT30_01580 PF03144 Elongation factor Tu domain 2 CTT30_01585 PF03143 Elongation factor Tu C-terminal domain CTT30_01585 PF03144 Elongation factor Tu domain 2 CTT30_01585 PF00009 Elongation factor Tu GTP binding domain CTT30_01590 PF04324 BFD-like [2Fe-2S] binding domain CTT30_01595 PF00210 Ferritin-like domain CTT30_01600 PF01250 Ribosomal protein S6 CTT30_01605 PF01084 Ribosomal protein S18 CTT30_01610 PF01281 Ribosomal protein L9, N-terminal domain CTT30_01610 PF03948 Ribosomal protein L9, C-terminal domain CTT30_01620 PF03796 DnaB-like helicase C terminal domain CTT30_01620 PF00772 DnaB-like helicase N terminal domain CTT30_01625 PF00842 Alanine racemase, C-terminal domain CTT30_01625 PF01168 Alanine racemase, N-terminal domain CTT30_01630 PF01894 Uncharacterised protein family UPF0047 CTT30_01635 PF00342 Phosphoglucose isomerase CTT30_01655 PF00005 ABC transporter CTT30_01670 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CTT30_01680 PF01625 Peptide methionine sulfoxide reductase CTT30_01685 PF17243 POTRA domain TamA domain 1 CTT30_01685 PF07244 Surface antigen variable number repeat CTT30_01685 PF01103 Surface antigen CTT30_01690 PF04357 TamB, inner membrane protein subunit of TAM complex CTT30_01695 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CTT30_01700 PF00719 Inorganic pyrophosphatase CTT30_01705 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CTT30_01710 PF08245 Mur ligase middle domain CTT30_01710 PF01225 Mur ligase family, catalytic domain CTT30_01710 PF02875 Mur ligase family, glutamate ligase domain CTT30_01715 PF02441 Flavoprotein CTT30_01725 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_01730 PF00005 ABC transporter CTT30_01740 PF00005 ABC transporter CTT30_01740 PF17755 UvrA DNA-binding domain CTT30_01740 PF17760 UvrA interaction domain CTT30_01745 PF00483 Nucleotidyl transferase CTT30_01750 PF00196 Bacterial regulatory proteins, luxR family CTT30_01755 PF00436 Single-strand binding protein family CTT30_01760 PF00990 Diguanylate cyclase, GGDEF domain CTT30_01760 PF17157 Gammaproteobacterial periplasmic sensor domain CTT30_01760 PF00563 EAL domain CTT30_01780 PF00263 Bacterial type II and III secretion system protein CTT30_01780 PF03958 Bacterial type II/III secretion system short domain CTT30_01785 PF01471 Putative peptidoglycan binding domain CTT30_01785 PF13401 AAA domain CTT30_01795 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CTT30_01795 PF00437 Type II/IV secretion system protein CTT30_01800 PF00482 Type II secretion system (T2SS), protein F CTT30_01810 PF07963 Prokaryotic N-terminal methylation motif CTT30_01815 PF07963 Prokaryotic N-terminal methylation motif CTT30_01850 PF04085 rod shape-determining protein MreC CTT30_01855 PF04093 rod shape-determining protein MreD CTT30_01860 PF02545 Maf-like protein CTT30_01865 PF10150 Ribonuclease E/G family CTT30_01865 PF00575 S1 RNA binding domain CTT30_01870 PF13502 AsmA-like C-terminal region CTT30_01870 PF13116 Protein of unknown function CTT30_01875 PF00795 Carbon-nitrogen hydrolase CTT30_01880 PF01523 Putative modulator of DNA gyrase CTT30_01930 PF01464 Transglycosylase SLT domain CTT30_01930 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CTT30_01935 PF04362 Bacterial Fe(2+) trafficking CTT30_01940 PF00633 Helix-hairpin-helix motif CTT30_01940 PF00730 HhH-GPD superfamily base excision DNA repair protein CTT30_01940 PF14815 NUDIX domain CTT30_01945 PF02390 Putative methyltransferase CTT30_01950 PF04960 Glutaminase CTT30_01955 PF06969 HemN C-terminal domain CTT30_01955 PF04055 Radical SAM superfamily CTT30_01960 PF01725 Ham1 family CTT30_01985 PF01609 Transposase DDE domain CTT30_01985 PF13006 Insertion element 4 transposase N-terminal CTT30_02000 PF02594 Uncharacterised ACR, YggU family COG1872 CTT30_02005 PF02325 YGGT family CTT30_02010 PF03807 NADP oxidoreductase coenzyme F420-dependent CTT30_02010 PF14748 Pyrroline-5-carboxylate reductase dimerisation CTT30_02015 PF01168 Alanine racemase, N-terminal domain CTT30_02020 PF00437 Type II/IV secretion system protein CTT30_02025 PF00437 Type II/IV secretion system protein CTT30_02030 PF03652 Holliday junction resolvase CTT30_02035 PF02622 Uncharacterized ACR, COG1678 CTT30_02040 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CTT30_02040 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CTT30_02045 PF04452 RNA methyltransferase CTT30_02050 PF04231 Endonuclease I CTT30_02055 PF10263 SprT-like family CTT30_02055 PF17283 SprT-like zinc ribbon domain CTT30_02065 PF00438 S-adenosylmethionine synthetase, N-terminal domain CTT30_02065 PF02773 S-adenosylmethionine synthetase, C-terminal domain CTT30_02065 PF02772 S-adenosylmethionine synthetase, central domain CTT30_02070 PF02780 Transketolase, C-terminal domain CTT30_02070 PF02779 Transketolase, pyrimidine binding domain CTT30_02070 PF00456 Transketolase, thiamine diphosphate binding domain CTT30_02075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CTT30_02075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CTT30_02080 PF00162 Phosphoglycerate kinase CTT30_02085 PF01116 Fructose-bisphosphate aldolase class-II CTT30_02090 PF00924 Mechanosensitive ion channel CTT30_02090 PF05552 Conserved TM helix CTT30_02100 PF01810 LysE type translocator CTT30_02105 PF03466 LysR substrate binding domain CTT30_02105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_02110 PF04402 Protein of unknown function (DUF541) CTT30_02115 PF00990 Diguanylate cyclase, GGDEF domain CTT30_02115 PF07694 5TMR of 5TMR-LYT CTT30_02125 PF00224 Pyruvate kinase, barrel domain CTT30_02125 PF02887 Pyruvate kinase, alpha/beta domain CTT30_02130 PF00455 DeoR C terminal sensor domain CTT30_02130 PF08220 DeoR-like helix-turn-helix domain CTT30_02135 PF01380 SIS domain CTT30_02140 PF00694 Aconitase C-terminal domain CTT30_02145 PF00330 Aconitase family (aconitate hydratase) CTT30_02150 PF00180 Isocitrate/isopropylmalate dehydrogenase CTT30_02155 PF00682 HMGL-like CTT30_02155 PF08502 LeuA allosteric (dimerisation) domain CTT30_02170 PF03466 LysR substrate binding domain CTT30_02170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_02175 PF00501 AMP-binding enzyme CTT30_02180 PF00205 Thiamine pyrophosphate enzyme, central domain CTT30_02180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CTT30_02180 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CTT30_02185 PF10369 Small subunit of acetolactate synthase CTT30_02190 PF03009 Glycerophosphoryl diester phosphodiesterase family CTT30_02195 PF07690 Major Facilitator Superfamily CTT30_02200 PF01842 ACT domain CTT30_02200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CTT30_02200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CTT30_02205 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CTT30_02210 PF01812 5-formyltetrahydrofolate cyclo-ligase family CTT30_02225 PF03695 Uncharacterised protein family (UPF0149) CTT30_02230 PF01494 FAD binding domain CTT30_02235 PF01494 FAD binding domain CTT30_02255 PF01571 Aminomethyltransferase folate-binding domain CTT30_02260 PF03937 Flavinator of succinate dehydrogenase CTT30_02270 PF00890 FAD binding domain CTT30_02270 PF02910 Fumarate reductase flavoprotein C-term CTT30_02275 PF04542 Sigma-70 region 2 CTT30_02275 PF08281 Sigma-70, region 4 CTT30_02280 PF03872 Anti sigma-E protein RseA, N-terminal domain CTT30_02280 PF03873 Anti sigma-E protein RseA, C-terminal domain CTT30_02285 PF17188 MucB/RseB C-terminal domain CTT30_02285 PF03888 MucB/RseB N-terminal domain CTT30_02295 PF00009 Elongation factor Tu GTP binding domain CTT30_02295 PF03144 Elongation factor Tu domain 2 CTT30_02295 PF06421 GTP-binding protein LepA C-terminus CTT30_02295 PF00679 Elongation factor G C-terminus CTT30_02300 PF10502 Signal peptidase, peptidase S26 CTT30_02305 PF14622 Ribonuclease-III-like CTT30_02305 PF00035 Double-stranded RNA binding motif CTT30_02310 PF01926 50S ribosome-binding GTPase CTT30_02310 PF07650 KH domain CTT30_02315 PF02565 Recombination protein O C terminal CTT30_02315 PF11967 Recombination protein O N terminal CTT30_02320 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CTT30_02325 PF01648 4'-phosphopantetheinyl transferase superfamily CTT30_02330 PF00072 Response regulator receiver domain CTT30_02330 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CTT30_02330 PF00672 HAMP domain CTT30_02330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_02330 PF00512 His Kinase A (phospho-acceptor) domain CTT30_02330 PF01627 Hpt domain CTT30_02335 PF01938 TRAM domain CTT30_02335 PF05958 tRNA (Uracil-5-)-methyltransferase CTT30_02340 PF02824 TGS domain CTT30_02340 PF04607 Region found in RelA / SpoT proteins CTT30_02340 PF13291 ACT domain CTT30_02345 PF03819 MazG nucleotide pyrophosphohydrolase domain CTT30_02350 PF06418 CTP synthase N-terminus CTT30_02350 PF00117 Glutamine amidotransferase class-I CTT30_02355 PF03952 Enolase, N-terminal domain CTT30_02355 PF00113 Enolase, C-terminal TIM barrel domain CTT30_02360 PF01966 HD domain CTT30_02360 PF01743 Poly A polymerase head domain CTT30_02360 PF12627 Probable RNA and SrmB- binding site of polymerase A CTT30_02365 PF13401 AAA domain CTT30_02365 PF01471 Putative peptidoglycan binding domain CTT30_02370 PF16537 Type II secretion system protein B CTT30_02375 PF08239 Bacterial SH3 domain CTT30_02380 PF01384 Phosphate transporter family CTT30_02385 PF01865 Protein of unknown function DUF47 CTT30_02390 PF01928 CYTH domain CTT30_02395 PF00027 Cyclic nucleotide-binding domain CTT30_02395 PF07885 Ion channel CTT30_02400 PF00672 HAMP domain CTT30_02400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_02405 PF08335 GlnD PII-uridylyltransferase CTT30_02405 PF03710 Glutamate-ammonia ligase adenylyltransferase CTT30_02410 PF00294 pfkB family carbohydrate kinase CTT30_02410 PF01467 Cytidylyltransferase-like CTT30_02415 PF00486 Transcriptional regulatory protein, C terminal CTT30_02415 PF00072 Response regulator receiver domain CTT30_02430 PF03737 Aldolase/RraA CTT30_02440 PF00696 Amino acid kinase family CTT30_02440 PF13840 ACT domain CTT30_02440 PF00742 Homoserine dehydrogenase CTT30_02440 PF03447 Homoserine dehydrogenase, NAD binding domain CTT30_02440 PF01842 ACT domain CTT30_02445 PF00288 GHMP kinases N terminal domain CTT30_02445 PF08544 GHMP kinases C terminal CTT30_02450 PF14821 Threonine synthase N terminus CTT30_02450 PF00291 Pyridoxal-phosphate dependent enzyme CTT30_02455 PF03458 UPF0126 domain CTT30_02460 PF01497 Periplasmic binding protein CTT30_02470 PF01048 Phosphorylase superfamily CTT30_02475 PF00312 Ribosomal protein S15 CTT30_02480 PF00575 S1 RNA binding domain CTT30_02480 PF01138 3' exoribonuclease family, domain 1 CTT30_02480 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CTT30_02480 PF00013 KH domain CTT30_02480 PF03725 3' exoribonuclease family, domain 2 CTT30_02485 PF07719 Tetratricopeptide repeat CTT30_02485 PF13181 Tetratricopeptide repeat CTT30_02495 PF01554 MatE CTT30_02500 PF02954 Bacterial regulatory protein, Fis family CTT30_02500 PF00072 Response regulator receiver domain CTT30_02500 PF00158 Sigma-54 interaction domain CTT30_02510 PF00248 Aldo/keto reductase family CTT30_02520 PF02976 DNA mismatch repair enzyme MutH CTT30_02525 PF00293 NUDIX domain CTT30_02530 PF01590 GAF domain CTT30_02530 PF05524 PEP-utilising enzyme, N-terminal CTT30_02530 PF00391 PEP-utilising enzyme, mobile domain CTT30_02530 PF02896 PEP-utilising enzyme, TIM barrel domain CTT30_02535 PF01925 Sulfite exporter TauE/SafE CTT30_02540 PF01790 Prolipoprotein diacylglyceryl transferase CTT30_02545 PF00303 Thymidylate synthase CTT30_02550 PF02690 Na+/Pi-cotransporter CTT30_02555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_02555 PF03466 LysR substrate binding domain CTT30_02560 PF01022 Bacterial regulatory protein, arsR family CTT30_02565 PF01649 Ribosomal protein S20 CTT30_02570 PF03023 Lipid II flippase MurJ CTT30_02575 PF01687 Riboflavin kinase CTT30_02575 PF06574 FAD synthetase CTT30_02580 PF06827 Zinc finger found in FPG and IleRS CTT30_02580 PF00133 tRNA synthetases class I (I, L, M and V) CTT30_02580 PF08264 Anticodon-binding domain of tRNA CTT30_02585 PF01252 Signal peptidase (SPase) II CTT30_02590 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTT30_02595 PF02401 LytB protein CTT30_02600 PF02554 Carbon starvation protein CstA CTT30_02610 PF13580 SIS domain CTT30_02615 PF03702 Anhydro-N-acetylmuramic acid kinase CTT30_02620 PF01869 BadF/BadG/BcrA/BcrD ATPase family CTT30_02630 PF01418 Helix-turn-helix domain, rpiR family CTT30_02630 PF01380 SIS domain CTT30_02635 PF00933 Glycosyl hydrolase family 3 N terminal domain CTT30_02640 PF00072 Response regulator receiver domain CTT30_02640 PF04397 LytTr DNA-binding domain CTT30_02645 PF06580 Histidine kinase CTT30_02645 PF07694 5TMR of 5TMR-LYT CTT30_02650 PF00793 DAHP synthetase I family CTT30_02655 PF01817 Chorismate mutase type II CTT30_02655 PF02153 Prephenate dehydrogenase CTT30_02660 PF01551 Peptidase family M23 CTT30_02660 PF04225 Opacity-associated protein A LysM-like domain CTT30_02665 PF07238 PilZ domain CTT30_02670 PF00005 ABC transporter CTT30_02670 PF12848 ABC transporter CTT30_02675 PF01464 Transglycosylase SLT domain CTT30_02675 PF14718 Soluble lytic murein transglycosylase L domain CTT30_02680 PF01371 Trp repressor protein CTT30_02685 PF01931 Protein of unknown function DUF84 CTT30_02690 PF00563 EAL domain CTT30_02690 PF00990 Diguanylate cyclase, GGDEF domain CTT30_02695 PF13416 Bacterial extracellular solute-binding protein CTT30_02700 PF00800 Prephenate dehydratase CTT30_02700 PF01817 Chorismate mutase type II CTT30_02705 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CTT30_02710 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTT30_02710 PF01464 Transglycosylase SLT domain CTT30_02715 PF13525 Outer membrane lipoprotein CTT30_02720 PF00849 RNA pseudouridylate synthase CTT30_02720 PF01479 S4 domain CTT30_02725 PF02578 Multi-copper polyphenol oxidoreductase laccase CTT30_02730 PF10431 C-terminal, D2-small domain, of ClpB protein CTT30_02730 PF02861 Clp amino terminal domain, pathogenicity island component CTT30_02730 PF00004 ATPase family associated with various cellular activities (AAA) CTT30_02730 PF07724 AAA domain (Cdc48 subfamily) CTT30_02730 PF17871 AAA lid domain CTT30_02780 PF00459 Inositol monophosphatase family CTT30_02785 PF00588 SpoU rRNA Methylase family CTT30_02790 PF02082 Transcriptional regulator CTT30_02795 PF00266 Aminotransferase class-V CTT30_02800 PF01592 NifU-like N terminal domain CTT30_02805 PF01521 Iron-sulphur cluster biosynthesis CTT30_02810 PF00226 DnaJ domain CTT30_02810 PF07743 HSCB C-terminal oligomerisation domain CTT30_02815 PF00012 Hsp70 protein CTT30_02820 PF00111 2Fe-2S iron-sulfur cluster binding domain CTT30_02825 PF04384 Iron-sulphur cluster assembly CTT30_02830 PF00883 Cytosol aminopeptidase family, catalytic domain CTT30_02830 PF12404 Peptidase CTT30_02835 PF00334 Nucleoside diphosphate kinase CTT30_02840 PF00679 Elongation factor G C-terminus CTT30_02840 PF14492 Elongation Factor G, domain II CTT30_02840 PF03764 Elongation factor G, domain IV CTT30_02840 PF00009 Elongation factor Tu GTP binding domain CTT30_02840 PF03144 Elongation factor Tu domain 2 CTT30_02845 PF03466 LysR substrate binding domain CTT30_02845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_02855 PF03466 LysR substrate binding domain CTT30_02855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_02860 PF00501 AMP-binding enzyme CTT30_02865 PF12833 Helix-turn-helix domain CTT30_02865 PF02805 Metal binding domain of Ada CTT30_02890 PF13629 Pilus formation protein N terminal region CTT30_02890 PF04972 BON domain CTT30_02890 PF00263 Bacterial type II and III secretion system protein CTT30_02920 PF00437 Type II/IV secretion system protein CTT30_02940 PF02417 Chromate transporter CTT30_02945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_02945 PF03466 LysR substrate binding domain CTT30_02955 PF12833 Helix-turn-helix domain CTT30_02960 PF11975 Family 4 glycosyl hydrolase C-terminal domain CTT30_02960 PF02056 Family 4 glycosyl hydrolase CTT30_02980 PF16363 GDP-mannose 4,6 dehydratase CTT30_02985 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CTT30_02985 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CTT30_02990 PF00288 GHMP kinases N terminal domain CTT30_02990 PF08544 GHMP kinases C terminal CTT30_02990 PF10509 Galactokinase galactose-binding signature CTT30_02995 PF01263 Aldose 1-epimerase CTT30_03000 PF00356 Bacterial regulatory proteins, lacI family CTT30_03015 PF03707 Bacterial signalling protein N terminal repeat CTT30_03015 PF00990 Diguanylate cyclase, GGDEF domain CTT30_03015 PF00563 EAL domain CTT30_03020 PF00356 Bacterial regulatory proteins, lacI family CTT30_03035 PF02378 Phosphotransferase system, EIIC CTT30_03035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CTT30_03035 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CTT30_03045 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CTT30_03045 PF14602 Hexapeptide repeat of succinyl-transferase CTT30_03050 PF00578 AhpC/TSA family CTT30_03050 PF10417 C-terminal domain of 1-Cys peroxiredoxin CTT30_03055 PF03466 LysR substrate binding domain CTT30_03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_03060 PF01274 Malate synthase CTT30_03065 PF00463 Isocitrate lyase family CTT30_03085 PF00571 CBS domain CTT30_03090 PF02547 Queuosine biosynthesis protein CTT30_03095 PF01702 Queuine tRNA-ribosyltransferase CTT30_03100 PF02699 Preprotein translocase subunit CTT30_03105 PF07549 SecD/SecF GG Motif CTT30_03105 PF02355 Protein export membrane protein CTT30_03105 PF13721 SecD export protein N-terminal TM region CTT30_03110 PF02355 Protein export membrane protein CTT30_03110 PF07549 SecD/SecF GG Motif CTT30_03120 PF03411 Penicillin-insensitive murein endopeptidase CTT30_03125 PF13006 Insertion element 4 transposase N-terminal CTT30_03125 PF01609 Transposase DDE domain CTT30_03130 PF12838 4Fe-4S dicluster domain CTT30_03135 PF16325 Peptidase family U32 C-terminal domain CTT30_03135 PF01136 Peptidase family U32 CTT30_03140 PF04381 Putative exonuclease, RdgC CTT30_03150 PF00072 Response regulator receiver domain CTT30_03150 PF00486 Transcriptional regulatory protein, C terminal CTT30_03155 PF00512 His Kinase A (phospho-acceptor) domain CTT30_03155 PF00989 PAS fold CTT30_03155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_03155 PF11808 Phosphate regulon sensor protein PhoR CTT30_03160 PF12849 PBP superfamily domain CTT30_03165 PF02541 Ppx/GppA phosphatase family CTT30_03170 PF02503 Polyphosphate kinase middle domain CTT30_03170 PF13090 Polyphosphate kinase C-terminal domain 2 CTT30_03170 PF13089 Polyphosphate kinase N-terminal domain CTT30_03170 PF17941 Polyphosphate kinase C-terminal domain 1 CTT30_03175 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_03180 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_03185 PF00005 ABC transporter CTT30_03190 PF01895 PhoU domain CTT30_03195 PF03976 Polyphosphate kinase 2 (PPK2) CTT30_03200 PF03932 CutC family CTT30_03205 PF01609 Transposase DDE domain CTT30_03205 PF13006 Insertion element 4 transposase N-terminal CTT30_03210 PF07130 YebG protein CTT30_03215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_03215 PF03466 LysR substrate binding domain CTT30_03225 PF17946 RecC C-terminal domain CTT30_03230 PF12705 PD-(D/E)XK nuclease superfamily CTT30_03230 PF13361 UvrD-like helicase C-terminal domain CTT30_03230 PF00580 UvrD/REP helicase N-terminal domain CTT30_03235 PF13538 UvrD-like helicase C-terminal domain CTT30_03245 PF00583 Acetyltransferase (GNAT) family CTT30_03245 PF00696 Amino acid kinase family CTT30_03255 PF03562 MltA specific insert domain CTT30_03255 PF06725 3D domain CTT30_03260 PF00899 ThiF family CTT30_03265 PF02657 Fe-S metabolism associated domain CTT30_03270 PF04055 Radical SAM superfamily CTT30_03275 PF13464 Domain of unknown function (DUF4115) CTT30_03280 PF04551 GcpE protein CTT30_03285 PF13393 Histidyl-tRNA synthetase CTT30_03285 PF03129 Anticodon binding domain CTT30_03290 PF09976 Tetratricopeptide repeat-like domain CTT30_03295 PF13360 PQQ-like domain CTT30_03300 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CTT30_03300 PF01926 50S ribosome-binding GTPase CTT30_03305 PF02272 DHHA1 domain CTT30_03305 PF01411 tRNA synthetases class II (A) CTT30_03305 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CTT30_03315 PF02601 Exonuclease VII, large subunit CTT30_03315 PF13742 OB-fold nucleic acid binding domain CTT30_03320 PF00478 IMP dehydrogenase / GMP reductase domain CTT30_03320 PF00571 CBS domain CTT30_03325 PF02540 NAD synthase CTT30_03325 PF00958 GMP synthase C terminal domain CTT30_03325 PF00117 Glutamine amidotransferase class-I CTT30_03330 PF06483 Chitinase C CTT30_03330 PF00704 Glycosyl hydrolases family 18 CTT30_03335 PF01184 GPR1/FUN34/yaaH family CTT30_03340 PF01235 Sodium:alanine symporter family CTT30_03345 PF01266 FAD dependent oxidoreductase CTT30_03350 PF03466 LysR substrate binding domain CTT30_03350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_03355 PF07885 Ion channel CTT30_03365 PF00072 Response regulator receiver domain CTT30_03365 PF01584 CheW-like domain CTT30_03370 PF01553 Acyltransferase CTT30_03375 PF00082 Subtilase family CTT30_03375 PF05922 Peptidase inhibitor I9 CTT30_03385 PF13840 ACT domain CTT30_03385 PF00696 Amino acid kinase family CTT30_03390 PF00360 Phytochrome region CTT30_03390 PF01590 GAF domain CTT30_03390 PF00563 EAL domain CTT30_03390 PF00990 Diguanylate cyclase, GGDEF domain CTT30_03395 PF00990 Diguanylate cyclase, GGDEF domain CTT30_03395 PF07694 5TMR of 5TMR-LYT CTT30_03405 PF01769 Divalent cation transporter CTT30_03405 PF03448 MgtE intracellular N domain CTT30_03405 PF00571 CBS domain CTT30_03410 PF08443 RimK-like ATP-grasp domain CTT30_03410 PF18030 RimK PreATP-grasp domain CTT30_03415 PF08443 RimK-like ATP-grasp domain CTT30_03415 PF18030 RimK PreATP-grasp domain CTT30_03430 PF01668 SmpB protein CTT30_03435 PF03364 Polyketide cyclase / dehydrase and lipid transport CTT30_03440 PF03658 RnfH family Ubiquitin CTT30_03445 PF04355 SmpA / OmlA family CTT30_03450 PF02463 RecF/RecN/SMC N terminal domain CTT30_03455 PF01513 ATP-NAD kinase CTT30_03460 PF01025 GrpE CTT30_03465 PF00375 Sodium:dicarboxylate symporter family CTT30_03475 PF00012 Hsp70 protein CTT30_03480 PF01556 DnaJ C terminal domain CTT30_03480 PF00226 DnaJ domain CTT30_03480 PF00684 DnaJ central domain CTT30_03515 PF03806 AbgT putative transporter family CTT30_03520 PF14437 MafB19-like deaminase CTT30_03525 PF01464 Transglycosylase SLT domain CTT30_03525 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTT30_03530 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CTT30_03530 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CTT30_03530 PF02769 AIR synthase related protein, C-terminal domain CTT30_03545 PF06786 Uncharacterised protein family (UPF0253) CTT30_03555 PF00551 Formyl transferase CTT30_03560 PF02769 AIR synthase related protein, C-terminal domain CTT30_03560 PF00586 AIR synthase related protein, N-terminal domain CTT30_03570 PF01479 S4 domain CTT30_03570 PF00849 RNA pseudouridylate synthase CTT30_03575 PF01713 Smr domain CTT30_03595 PF02838 Glycosyl hydrolase family 20, domain 2 CTT30_03595 PF00728 Glycosyl hydrolase family 20, catalytic domain CTT30_03595 PF03173 Putative carbohydrate binding domain CTT30_03595 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CTT30_03600 PF00854 POT family CTT30_03605 PF00733 Asparagine synthase CTT30_03605 PF13537 Glutamine amidotransferase domain CTT30_03610 PF00999 Sodium/hydrogen exchanger family CTT30_03610 PF02254 TrkA-N domain CTT30_03615 PF00480 ROK family CTT30_03615 PF01047 MarR family CTT30_03620 PF01979 Amidohydrolase family CTT30_03625 PF02378 Phosphotransferase system, EIIC CTT30_03625 PF00367 phosphotransferase system, EIIB CTT30_03625 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CTT30_03630 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CTT30_03630 PF00749 tRNA synthetases class I (E and Q), catalytic domain CTT30_03635 PF01475 Ferric uptake regulator family CTT30_03645 PF13609 Gram-negative porin CTT30_03660 PF01145 SPFH domain / Band 7 family CTT30_03660 PF16200 C-terminal region of band_7 CTT30_03665 PF00085 Thioredoxin CTT30_03675 PF00106 short chain dehydrogenase CTT30_03680 PF08338 Domain of unknown function (DUF1731) CTT30_03680 PF01370 NAD dependent epimerase/dehydratase family CTT30_03685 PF07556 Protein of unknown function (DUF1538) CTT30_03690 PF07556 Protein of unknown function (DUF1538) CTT30_03705 PF12850 Calcineurin-like phosphoesterase superfamily domain CTT30_03720 PF17323 Trans-membrane regulatory protein ToxS CTT30_03725 PF00486 Transcriptional regulatory protein, C terminal CTT30_03730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_03730 PF00183 Hsp90 protein CTT30_03735 PF05191 Adenylate kinase, active site lid CTT30_03740 PF00762 Ferrochelatase CTT30_03745 PF01223 DNA/RNA non-specific endonuclease CTT30_03750 PF01367 5'-3' exonuclease, C-terminal SAM fold CTT30_03750 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CTT30_03755 PF11892 Domain of unknown function (DUF3412) CTT30_03755 PF03641 Possible lysine decarboxylase CTT30_03755 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CTT30_03760 PF00990 Diguanylate cyclase, GGDEF domain CTT30_03770 PF14489 QueF-like protein CTT30_03770 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CTT30_03775 PF07348 Syd protein (SUKH-2) CTT30_03780 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) CTT30_03795 PF07687 Peptidase dimerisation domain CTT30_03795 PF01546 Peptidase family M20/M25/M40 CTT30_03800 PF03960 ArsC family CTT30_03825 PF02335 Cytochrome c552 CTT30_03835 PF13247 4Fe-4S dicluster domain CTT30_03835 PF00037 4Fe-4S binding domain CTT30_03840 PF03916 Polysulphide reductase, NrfD CTT30_03845 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CTT30_03845 PF01578 Cytochrome C assembly protein CTT30_03850 PF08534 Redoxin CTT30_03855 PF03918 Cytochrome C biogenesis protein CTT30_03860 PF11143 Protein of unknown function (DUF2919) CTT30_03865 PF04261 Dyp-type peroxidase family CTT30_03870 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CTT30_03880 PF00579 tRNA synthetases class I (W and Y) CTT30_03885 PF08525 Opacity-associated protein A N-terminal motif CTT30_03885 PF01551 Peptidase family M23 CTT30_03885 PF01476 LysM domain CTT30_03890 PF00700 Bacterial flagellin C-terminal helical region CTT30_03890 PF07196 Flagellin hook IN motif CTT30_03890 PF00669 Bacterial flagellin N-terminal helical region CTT30_03895 PF00700 Bacterial flagellin C-terminal helical region CTT30_03895 PF07196 Flagellin hook IN motif CTT30_03895 PF00669 Bacterial flagellin N-terminal helical region CTT30_03905 PF00669 Bacterial flagellin N-terminal helical region CTT30_03905 PF00700 Bacterial flagellin C-terminal helical region CTT30_03905 PF07196 Flagellin hook IN motif CTT30_03910 PF03646 FlaG protein CTT30_03915 PF07196 Flagellin hook IN motif CTT30_03915 PF02465 Flagellar hook-associated protein 2 N-terminus CTT30_03915 PF07195 Flagellar hook-associated protein 2 C-terminus CTT30_03925 PF02561 Flagellar protein FliS CTT30_03930 PF06490 Flagellar regulatory protein FleQ CTT30_03930 PF02954 Bacterial regulatory protein, Fis family CTT30_03930 PF00158 Sigma-54 interaction domain CTT30_03935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_03935 PF00512 His Kinase A (phospho-acceptor) domain CTT30_03935 PF13188 PAS domain CTT30_03940 PF00158 Sigma-54 interaction domain CTT30_03940 PF02954 Bacterial regulatory protein, Fis family CTT30_03940 PF00072 Response regulator receiver domain CTT30_03945 PF02049 Flagellar hook-basal body complex protein FliE CTT30_03950 PF08345 Flagellar M-ring protein C-terminal CTT30_03950 PF01514 Secretory protein of YscJ/FliF family CTT30_03955 PF14841 FliG middle domain CTT30_03955 PF01706 FliG C-terminal domain CTT30_03955 PF14842 FliG N-terminal domain CTT30_03965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CTT30_03965 PF18269 T3SS EscN ATPase C-terminal domain CTT30_03985 PF02154 Flagellar motor switch protein FliM CTT30_03985 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CTT30_03990 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CTT30_03995 PF04347 Flagellar biosynthesis protein, FliO CTT30_04000 PF00813 FliP family CTT30_04005 PF01313 Bacterial export proteins, family 3 CTT30_04010 PF01311 Bacterial export proteins, family 1 CTT30_04015 PF01312 FlhB HrpN YscU SpaS Family CTT30_04020 PF01713 Smr domain CTT30_04025 PF05175 Methyltransferase small domain CTT30_04030 PF01264 Chorismate synthase CTT30_04040 PF03458 UPF0126 domain CTT30_04045 PF04315 Elongation factor P hydroxylase CTT30_04060 PF08891 YfcL protein CTT30_04065 PF01266 FAD dependent oxidoreductase CTT30_04065 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CTT30_04070 PF02801 Beta-ketoacyl synthase, C-terminal domain CTT30_04070 PF00109 Beta-ketoacyl synthase, N-terminal domain CTT30_04075 PF11890 Domain of unknown function (DUF3410) CTT30_04075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CTT30_04075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CTT30_04080 PF01118 Semialdehyde dehydrogenase, NAD binding domain CTT30_04080 PF02774 Semialdehyde dehydrogenase, dimerisation domain CTT30_04090 PF01416 tRNA pseudouridine synthase CTT30_04095 PF01039 Carboxyl transferase domain CTT30_04095 PF17848 Acetyl-coA carboxylase zinc finger domain CTT30_04100 PF08245 Mur ligase middle domain CTT30_04100 PF02875 Mur ligase family, glutamate ligase domain CTT30_04105 PF05036 Sporulation related domain CTT30_04110 PF02674 Colicin V production protein CTT30_04115 PF00156 Phosphoribosyl transferase domain CTT30_04120 PF00950 ABC 3 transport family CTT30_04125 PF00005 ABC transporter CTT30_04130 PF01297 Zinc-uptake complex component A periplasmic CTT30_04135 PF02311 AraC-like ligand binding domain CTT30_04135 PF12833 Helix-turn-helix domain CTT30_04140 PF04023 FeoA domain CTT30_04145 PF07670 Nucleoside recognition CTT30_04145 PF02421 Ferrous iron transport protein B CTT30_04145 PF07664 Ferrous iron transport protein B C terminus CTT30_04160 PF00750 tRNA synthetases class I (R) CTT30_04160 PF05746 DALR anticodon binding domain CTT30_04160 PF03485 Arginyl tRNA synthetase N terminal domain CTT30_04165 PF06185 YecM protein CTT30_04170 PF00675 Insulinase (Peptidase family M16) CTT30_04170 PF05193 Peptidase M16 inactive domain CTT30_04175 PF00300 Histidine phosphatase superfamily (branch 1) CTT30_04180 PF00771 FHIPEP family CTT30_04185 PF00448 SRP54-type protein, GTPase domain CTT30_04190 PF10609 NUBPL iron-transfer P-loop NTPase CTT30_04195 PF04542 Sigma-70 region 2 CTT30_04195 PF04539 Sigma-70 region 3 CTT30_04195 PF04545 Sigma-70, region 4 CTT30_04200 PF00072 Response regulator receiver domain CTT30_04205 PF04344 Chemotaxis phosphatase, CheZ CTT30_04210 PF01584 CheW-like domain CTT30_04210 PF02895 Signal transducing histidine kinase, homodimeric domain CTT30_04210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_04210 PF00072 Response regulator receiver domain CTT30_04210 PF01627 Hpt domain CTT30_04215 PF00072 Response regulator receiver domain CTT30_04215 PF01339 CheB methylesterase CTT30_04220 PF13614 AAA domain CTT30_04230 PF01584 CheW-like domain CTT30_04240 PF00005 ABC transporter CTT30_04245 PF03379 CcmB protein CTT30_04250 PF01578 Cytochrome C assembly protein CTT30_04255 PF04995 Heme exporter protein D (CcmD) CTT30_04260 PF03100 CcmE CTT30_04265 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CTT30_04265 PF01578 Cytochrome C assembly protein CTT30_04270 PF08534 Redoxin CTT30_04275 PF03918 Cytochrome C biogenesis protein CTT30_04280 PF03918 Cytochrome C biogenesis protein CTT30_04285 PF04333 MlaA lipoprotein CTT30_04290 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CTT30_04295 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CTT30_04305 PF04542 Sigma-70 region 2 CTT30_04305 PF08281 Sigma-70, region 4 CTT30_04310 PF00108 Thiolase, N-terminal domain CTT30_04310 PF02803 Thiolase, C-terminal domain CTT30_04315 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CTT30_04315 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CTT30_04315 PF00378 Enoyl-CoA hydratase/isomerase CTT30_04320 PF00881 Nitroreductase family CTT30_04325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_04325 PF03466 LysR substrate binding domain CTT30_04330 PF00072 Response regulator receiver domain CTT30_04340 PF04304 Protein of unknown function (DUF454) CTT30_04345 PF00156 Phosphoribosyl transferase domain CTT30_04350 PF12169 DNA polymerase III subunits gamma and tau domain III CTT30_04350 PF12170 DNA polymerase III tau subunit V interacting with alpha CTT30_04350 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CTT30_04355 PF02575 YbaB/EbfC DNA-binding family CTT30_04360 PF13662 Toprim domain CTT30_04360 PF02132 RecR protein CTT30_04365 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CTT30_04365 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CTT30_04380 PF00072 Response regulator receiver domain CTT30_04380 PF00486 Transcriptional regulatory protein, C terminal CTT30_04385 PF00672 HAMP domain CTT30_04385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_04385 PF00512 His Kinase A (phospho-acceptor) domain CTT30_04390 PF01547 Bacterial extracellular solute-binding protein CTT30_04395 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_04400 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_04405 PF03459 TOBE domain CTT30_04405 PF00005 ABC transporter CTT30_04405 PF17912 MalK OB fold domain CTT30_04410 PF03480 Bacterial extracellular solute-binding protein, family 7 CTT30_04415 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CTT30_04420 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CTT30_04430 PF02954 Bacterial regulatory protein, Fis family CTT30_04430 PF00072 Response regulator receiver domain CTT30_04430 PF00158 Sigma-54 interaction domain CTT30_04435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_04435 PF00512 His Kinase A (phospho-acceptor) domain CTT30_04435 PF02743 Cache domain CTT30_04440 PF05698 Bacterial trigger factor protein (TF) C-terminus CTT30_04440 PF05697 Bacterial trigger factor protein (TF) CTT30_04440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTT30_04445 PF00574 Clp protease CTT30_04450 PF06689 ClpX C4-type zinc finger CTT30_04450 PF10431 C-terminal, D2-small domain, of ClpB protein CTT30_04450 PF07724 AAA domain (Cdc48 subfamily) CTT30_04455 PF05362 Lon protease (S16) C-terminal proteolytic domain CTT30_04455 PF00004 ATPase family associated with various cellular activities (AAA) CTT30_04455 PF02190 ATP-dependent protease La (LON) substrate-binding domain CTT30_04460 PF00216 Bacterial DNA-binding protein CTT30_04465 PF13145 PPIC-type PPIASE domain CTT30_04475 PF02224 Cytidylate kinase CTT30_04480 PF00575 S1 RNA binding domain CTT30_04485 PF00216 Bacterial DNA-binding protein CTT30_04490 PF06305 Lipopolysaccharide assembly protein A domain CTT30_04495 PF18073 Rubredoxin metal binding domain CTT30_04500 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CTT30_04505 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CTT30_04515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_04515 PF03466 LysR substrate binding domain CTT30_04530 PF02653 Branched-chain amino acid transport system / permease component CTT30_04535 PF00005 ABC transporter CTT30_04540 PF01207 Dihydrouridine synthase (Dus) CTT30_04545 PF02810 SEC-C motif CTT30_04545 PF07517 SecA DEAD-like domain CTT30_04545 PF07516 SecA Wing and Scaffold domain CTT30_04545 PF01043 SecA preprotein cross-linking domain CTT30_04550 PF03548 Outer membrane lipoprotein carrier protein LolA CTT30_04555 PF12002 MgsA AAA+ ATPase C terminal CTT30_04555 PF16193 AAA C-terminal domain CTT30_04555 PF00004 ATPase family associated with various cellular activities (AAA) CTT30_04560 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CTT30_04560 PF02403 Seryl-tRNA synthetase N-terminal domain CTT30_04565 PF17763 Glutaminase/Asparaginase C-terminal domain CTT30_04565 PF00710 Asparaginase, N-terminal CTT30_04570 PF01343 Peptidase family S49 CTT30_04575 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTT30_04575 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTT30_04580 PF01842 ACT domain CTT30_04580 PF00551 Formyl transferase CTT30_04590 PF04851 Type III restriction enzyme, res subunit CTT30_04590 PF13307 Helicase C-terminal domain CTT30_04595 PF00814 Glycoprotease family CTT30_04610 PF00561 alpha/beta hydrolase fold CTT30_04615 PF00501 AMP-binding enzyme CTT30_04615 PF13193 AMP-binding enzyme C-terminal domain CTT30_04620 PF01612 3'-5' exonuclease CTT30_04620 PF00570 HRDC domain CTT30_04625 PF00916 Sulfate permease family CTT30_04625 PF01740 STAS domain CTT30_04630 PF00575 S1 RNA binding domain CTT30_04630 PF10150 Ribonuclease E/G family CTT30_04630 PF12111 Polyribonucleotide phosphorylase C terminal CTT30_04635 PF01479 S4 domain CTT30_04635 PF00849 RNA pseudouridylate synthase CTT30_04640 PF02545 Maf-like protein CTT30_04645 PF02620 Large ribosomal RNA subunit accumulation protein YceD CTT30_04650 PF01783 Ribosomal L32p protein family CTT30_04655 PF02504 Fatty acid synthesis protein CTT30_04660 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CTT30_04660 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CTT30_04665 PF00698 Acyl transferase domain CTT30_04675 PF00550 Phosphopantetheine attachment site CTT30_04680 PF00109 Beta-ketoacyl synthase, N-terminal domain CTT30_04680 PF02801 Beta-ketoacyl synthase, C-terminal domain CTT30_04685 PF01063 Amino-transferase class IV CTT30_04690 PF02618 YceG-like family CTT30_04695 PF02223 Thymidylate kinase CTT30_04700 PF09115 DNA polymerase III, delta subunit, C terminal CTT30_04705 PF01026 TatD related DNase CTT30_04710 PF00367 phosphotransferase system, EIIB CTT30_04710 PF02378 Phosphotransferase system, EIIC CTT30_04725 PF00209 Sodium:neurotransmitter symporter family CTT30_04740 PF01734 Patatin-like phospholipase CTT30_04745 PF11066 Protein of unknown function (DUF2867) CTT30_04745 PF13460 NAD(P)H-binding CTT30_04765 PF02075 Crossover junction endodeoxyribonuclease RuvC CTT30_04770 PF00672 HAMP domain CTT30_04770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_04770 PF02203 Tar ligand binding domain homologue CTT30_04775 PF01330 RuvA N terminal domain CTT30_04775 PF07499 RuvA, C-terminal domain CTT30_04780 PF17864 RuvB AAA lid domain CTT30_04780 PF05491 RuvB C-terminal winged helix domain CTT30_04780 PF05496 Holliday junction DNA helicase RuvB P-loop domain CTT30_04785 PF01654 Cytochrome bd terminal oxidase subunit I CTT30_04790 PF02322 Cytochrome bd terminal oxidase subunit II CTT30_04795 PF08173 Membrane bound YbgT-like protein CTT30_04805 PF03061 Thioesterase superfamily CTT30_04810 PF01618 MotA/TolQ/ExbB proton channel family CTT30_04815 PF02472 Biopolymer transport protein ExbD/TolR CTT30_04825 PF04052 TolB amino-terminal domain CTT30_04825 PF07676 WD40-like Beta Propeller Repeat CTT30_04830 PF00691 OmpA family CTT30_04835 PF16331 TolA binding protein trimerisation CTT30_04835 PF13174 Tetratricopeptide repeat CTT30_04840 PF02445 Quinolinate synthetase A protein CTT30_04855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_04855 PF09308 LuxQ, periplasmic CTT30_04855 PF00072 Response regulator receiver domain CTT30_04855 PF00512 His Kinase A (phospho-acceptor) domain CTT30_04860 PF06610 L-alanine exporter CTT30_04870 PF07728 AAA domain (dynein-related subfamily) CTT30_04870 PF12102 Domain of unknown function (DUF3578) CTT30_04890 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTT30_04895 PF01161 Phosphatidylethanolamine-binding protein CTT30_04905 PF01238 Phosphomannose isomerase type I CTT30_04910 PF00480 ROK family CTT30_04925 PF16295 Tetracyclin repressor-like, C-terminal domain CTT30_04925 PF00440 Bacterial regulatory proteins, tetR family CTT30_04930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTT30_04930 PF09317 Domain of unknown function (DUF1974) CTT30_04930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTT30_04930 PF02770 Acyl-CoA dehydrogenase, middle domain CTT30_04935 PF07055 Enoyl reductase FAD binding domain CTT30_04935 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CTT30_04935 PF12241 Trans-2-enoyl-CoA reductase catalytic region CTT30_04945 PF03372 Endonuclease/Exonuclease/phosphatase family CTT30_04950 PF00672 HAMP domain CTT30_04950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_04955 PF08007 Cupin superfamily protein CTT30_04960 PF10689 Protein of unknown function (DUF2496) CTT30_04970 PF01925 Sulfite exporter TauE/SafE CTT30_04975 PF06733 DEAD_2 CTT30_04975 PF13307 Helicase C-terminal domain CTT30_04985 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CTT30_04990 PF00202 Aminotransferase class-III CTT30_04995 PF04055 Radical SAM superfamily CTT30_04995 PF06968 Biotin and Thiamin Synthesis associated domain CTT30_05000 PF00155 Aminotransferase class I and II CTT30_05005 PF12697 Alpha/beta hydrolase family CTT30_05005 PF08241 Methyltransferase domain CTT30_05020 PF01435 Peptidase family M48 CTT30_05055 PF16036 Chalcone isomerase-like CTT30_05065 PF08328 Adenylosuccinate lyase C-terminal CTT30_05065 PF00206 Lyase CTT30_05070 PF04356 Protein of unknown function (DUF489) CTT30_05085 PF00294 pfkB family carbohydrate kinase CTT30_05090 PF00816 H-NS histone family CTT30_05095 PF03553 Na+/H+ antiporter family CTT30_05100 PF08029 HisG, C-terminal domain CTT30_05100 PF01634 ATP phosphoribosyltransferase CTT30_05105 PF00815 Histidinol dehydrogenase CTT30_05110 PF00155 Aminotransferase class I and II CTT30_05115 PF00475 Imidazoleglycerol-phosphate dehydratase CTT30_05115 PF08645 Polynucleotide kinase 3 phosphatase CTT30_05120 PF00117 Glutamine amidotransferase class-I CTT30_05125 PF00977 Histidine biosynthesis protein CTT30_05130 PF00977 Histidine biosynthesis protein CTT30_05135 PF01502 Phosphoribosyl-AMP cyclohydrolase CTT30_05135 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CTT30_05140 PF00990 Diguanylate cyclase, GGDEF domain CTT30_05140 PF13426 PAS domain CTT30_05140 PF00563 EAL domain CTT30_05145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_05145 PF00512 His Kinase A (phospho-acceptor) domain CTT30_05145 PF09456 RcsC Alpha-Beta-Loop (ABL) CTT30_05145 PF00072 Response regulator receiver domain CTT30_05155 PF00072 Response regulator receiver domain CTT30_05165 PF02833 DHHA2 domain CTT30_05165 PF01368 DHH family CTT30_05175 PF00005 ABC transporter CTT30_05180 PF00005 ABC transporter CTT30_05180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTT30_05185 PF12911 N-terminal TM domain of oligopeptide transport permease C CTT30_05185 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_05190 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_05195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CTT30_05200 PF02954 Bacterial regulatory protein, Fis family CTT30_05200 PF00158 Sigma-54 interaction domain CTT30_05205 PF04012 PspA/IM30 family CTT30_05210 PF06667 Phage shock protein B CTT30_05225 PF13533 Biotin-lipoyl like CTT30_05230 PF00873 AcrB/AcrD/AcrF family CTT30_05235 PF03352 Methyladenine glycosylase CTT30_05240 PF03280 Proteobacterial lipase chaperone protein CTT30_05245 PF00561 alpha/beta hydrolase fold CTT30_05250 PF01053 Cys/Met metabolism PLP-dependent enzyme CTT30_05255 PF13091 PLD-like domain CTT30_05255 PF13396 Phospholipase_D-nuclease N-terminal CTT30_05260 PF00209 Sodium:neurotransmitter symporter family CTT30_05265 PF00849 RNA pseudouridylate synthase CTT30_05270 PF10672 S-adenosylmethionine-dependent methyltransferase CTT30_05270 PF17785 PUA-like domain CTT30_05275 PF01066 CDP-alcohol phosphatidyltransferase CTT30_05280 PF00005 ABC transporter CTT30_05285 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_05290 PF13416 Bacterial extracellular solute-binding protein CTT30_05300 PF06945 Protein of unknown function (DUF1289) CTT30_05315 PF03795 YCII-related domain CTT30_05320 PF03061 Thioesterase superfamily CTT30_05325 PF04279 Intracellular septation protein A CTT30_05335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_05335 PF00072 Response regulator receiver domain CTT30_05340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_05340 PF00072 Response regulator receiver domain CTT30_05345 PF17327 Acyl homoserine lactone synthase CTT30_05350 PF00216 Bacterial DNA-binding protein CTT30_05355 PF04269 Protein of unknown function, DUF440 CTT30_05360 PF01132 Elongation factor P (EF-P) OB domain CTT30_05360 PF08207 Elongation factor P (EF-P) KOW-like domain CTT30_05360 PF09285 Elongation factor P, C-terminal CTT30_05370 PF00136 DNA polymerase family B CTT30_05370 PF03104 DNA polymerase family B, exonuclease domain CTT30_05385 PF00196 Bacterial regulatory proteins, luxR family CTT30_05385 PF00072 Response regulator receiver domain CTT30_05390 PF01541 GIY-YIG catalytic domain CTT30_05390 PF02151 UvrB/uvrC motif CTT30_05390 PF08459 UvrC Helix-hairpin-helix N-terminal CTT30_05395 PF01066 CDP-alcohol phosphatidyltransferase CTT30_05420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTT30_05430 PF00266 Aminotransferase class-V CTT30_05435 PF00672 HAMP domain CTT30_05435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_05435 PF12729 Four helix bundle sensory module for signal transduction CTT30_05440 PF04055 Radical SAM superfamily CTT30_05440 PF11842 Domain of unknown function (DUF3362) CTT30_05440 PF08497 Radical SAM N-terminal CTT30_05445 PF00563 EAL domain CTT30_05445 PF00990 Diguanylate cyclase, GGDEF domain CTT30_05445 PF03707 Bacterial signalling protein N terminal repeat CTT30_05460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_05460 PF03466 LysR substrate binding domain CTT30_05465 PF01717 Cobalamin-independent synthase, Catalytic domain CTT30_05465 PF08267 Cobalamin-independent synthase, N-terminal domain CTT30_05475 PF02566 OsmC-like protein CTT30_05480 PF01047 MarR family CTT30_05490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_05490 PF03466 LysR substrate binding domain CTT30_05515 PF02627 Carboxymuconolactone decarboxylase family CTT30_05540 PF04116 Fatty acid hydroxylase superfamily CTT30_05550 PF12833 Helix-turn-helix domain CTT30_05550 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CTT30_05565 PF00012 Hsp70 protein CTT30_05570 PF00012 Hsp70 protein CTT30_05605 PF11898 Domain of unknown function (DUF3418) CTT30_05605 PF04408 Helicase associated domain (HA2) CTT30_05605 PF00271 Helicase conserved C-terminal domain CTT30_05605 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CTT30_05605 PF00270 DEAD/DEAH box helicase CTT30_05620 PF00290 Tryptophan synthase alpha chain CTT30_05625 PF00291 Pyridoxal-phosphate dependent enzyme CTT30_05630 PF00218 Indole-3-glycerol phosphate synthase CTT30_05630 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CTT30_05635 PF02885 Glycosyl transferase family, helical bundle domain CTT30_05635 PF00591 Glycosyl transferase family, a/b domain CTT30_05640 PF00117 Glutamine amidotransferase class-I CTT30_05645 PF04715 Anthranilate synthase component I, N terminal region CTT30_05645 PF00425 chorismate binding enzyme CTT30_05650 PF08056 Tryptophan operon leader peptide CTT30_05655 PF02811 PHP domain CTT30_05660 PF01300 Telomere recombination CTT30_05670 PF00563 EAL domain CTT30_05670 PF00990 Diguanylate cyclase, GGDEF domain CTT30_05670 PF03707 Bacterial signalling protein N terminal repeat CTT30_05675 PF00849 RNA pseudouridylate synthase CTT30_05675 PF01479 S4 domain CTT30_05680 PF02567 Phenazine biosynthesis-like protein CTT30_05685 PF00664 ABC transporter transmembrane region CTT30_05685 PF00005 ABC transporter CTT30_05690 PF00005 ABC transporter CTT30_05690 PF00664 ABC transporter transmembrane region CTT30_05695 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTT30_05705 PF00266 Aminotransferase class-V CTT30_05710 PF00675 Insulinase (Peptidase family M16) CTT30_05710 PF05193 Peptidase M16 inactive domain CTT30_05720 PF02698 DUF218 domain CTT30_05730 PF00390 Malic enzyme, N-terminal domain CTT30_05730 PF03949 Malic enzyme, NAD binding domain CTT30_05735 PF11898 Domain of unknown function (DUF3418) CTT30_05735 PF04408 Helicase associated domain (HA2) CTT30_05735 PF00271 Helicase conserved C-terminal domain CTT30_05735 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CTT30_05735 PF00270 DEAD/DEAH box helicase CTT30_05750 PF00155 Aminotransferase class I and II CTT30_05755 PF00672 HAMP domain CTT30_05755 PF01966 HD domain CTT30_05765 PF00155 Aminotransferase class I and II CTT30_05765 PF00392 Bacterial regulatory proteins, gntR family CTT30_05775 PF00152 tRNA synthetases class II (D, K and N) CTT30_05775 PF01336 OB-fold nucleic acid binding domain CTT30_05780 PF12729 Four helix bundle sensory module for signal transduction CTT30_05780 PF00672 HAMP domain CTT30_05780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_05785 PF01242 6-pyruvoyl tetrahydropterin synthase CTT30_05790 PF03222 Tryptophan/tyrosine permease family CTT30_05800 PF03313 Serine dehydratase alpha chain CTT30_05800 PF03315 Serine dehydratase beta chain CTT30_05805 PF03222 Tryptophan/tyrosine permease family CTT30_05810 PF00293 NUDIX domain CTT30_05820 PF09308 LuxQ, periplasmic CTT30_05820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_05820 PF00512 His Kinase A (phospho-acceptor) domain CTT30_05820 PF00072 Response regulator receiver domain CTT30_05825 PF00425 chorismate binding enzyme CTT30_05825 PF04715 Anthranilate synthase component I, N terminal region CTT30_05840 PF04317 YcjX-like family, DUF463 CTT30_05845 PF05128 Domain of unknown function (DUF697) CTT30_05850 PF18024 Helix-turn-helix domain CTT30_05850 PF00158 Sigma-54 interaction domain CTT30_05855 PF13302 Acetyltransferase (GNAT) domain CTT30_05875 PF00990 Diguanylate cyclase, GGDEF domain CTT30_05885 PF00925 GTP cyclohydrolase II CTT30_05910 PF01471 Putative peptidoglycan binding domain CTT30_05910 PF03734 L,D-transpeptidase catalytic domain CTT30_05915 PF05951 Bacterial protein of unknown function (DUF882) CTT30_05920 PF00753 Metallo-beta-lactamase superfamily CTT30_05935 PF03480 Bacterial extracellular solute-binding protein, family 7 CTT30_05945 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CTT30_05950 PF17200 Single Cache domain 2 CTT30_05950 PF07730 Histidine kinase CTT30_05955 PF00072 Response regulator receiver domain CTT30_05955 PF00196 Bacterial regulatory proteins, luxR family CTT30_05965 PF00210 Ferritin-like domain CTT30_05975 PF13520 Amino acid permease CTT30_05980 PF00892 EamA-like transporter family CTT30_06000 PF04229 GrpB protein CTT30_06010 PF14552 Tautomerase enzyme CTT30_06105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTT30_06275 PF01042 Endoribonuclease L-PSP CTT30_06375 PF09905 DNA-binding protein VF530 CTT30_06590 PF01609 Transposase DDE domain CTT30_06590 PF13006 Insertion element 4 transposase N-terminal CTT30_06730 PF04229 GrpB protein CTT30_06775 PF07007 Lysozyme inhibitor LprI CTT30_06805 PF02567 Phenazine biosynthesis-like protein CTT30_06860 PF01609 Transposase DDE domain CTT30_06860 PF13006 Insertion element 4 transposase N-terminal CTT30_06880 PF01810 LysE type translocator CTT30_06885 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CTT30_06890 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system CTT30_06900 PF02567 Phenazine biosynthesis-like protein CTT30_06980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTT30_06985 PF04209 homogentisate 1,2-dioxygenase CTT30_06995 PF14497 Glutathione S-transferase, C-terminal domain CTT30_06995 PF02798 Glutathione S-transferase, N-terminal domain CTT30_07010 PF13488 Glycine zipper CTT30_07010 PF00691 OmpA family CTT30_07025 PF02913 FAD linked oxidases, C-terminal domain CTT30_07025 PF01565 FAD binding domain CTT30_07025 PF13183 4Fe-4S dicluster domain CTT30_07030 PF04191 Phospholipid methyltransferase CTT30_07040 PF00221 Aromatic amino acid lyase CTT30_07045 PF01175 Urocanase Rossmann-like domain CTT30_07045 PF17392 Urocanase C-terminal domain CTT30_07045 PF17391 Urocanase N-terminal domain CTT30_07050 PF00491 Arginase family CTT30_07055 PF01979 Amidohydrolase family CTT30_07060 PF00392 Bacterial regulatory proteins, gntR family CTT30_07060 PF07702 UTRA domain CTT30_07065 PF07070 SpoOM protein CTT30_07085 PF05724 Thiopurine S-methyltransferase (TPMT) CTT30_07090 PF02222 ATP-grasp domain CTT30_07095 PF11871 Domain of unknown function (DUF3391) CTT30_07095 PF01966 HD domain CTT30_07100 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CTT30_07100 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CTT30_07105 PF04172 LrgB-like family CTT30_07110 PF03788 LrgA family CTT30_07115 PF08411 Exonuclease C-terminal CTT30_07115 PF00929 Exonuclease CTT30_07120 PF00375 Sodium:dicarboxylate symporter family CTT30_07125 PF13460 NAD(P)H-binding CTT30_07130 PF01613 Flavin reductase like domain CTT30_07135 PF02277 Phosphoribosyltransferase CTT30_07140 PF02654 Cobalamin-5-phosphate synthase CTT30_07155 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CTT30_07160 PF01032 FecCD transport family CTT30_07165 PF00005 ABC transporter CTT30_07175 PF00990 Diguanylate cyclase, GGDEF domain CTT30_07190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_07190 PF03466 LysR substrate binding domain CTT30_07195 PF00005 ABC transporter CTT30_07205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_07205 PF00512 His Kinase A (phospho-acceptor) domain CTT30_07205 PF00072 Response regulator receiver domain CTT30_07205 PF09308 LuxQ, periplasmic CTT30_07215 PF01863 Protein of unknown function DUF45 CTT30_07220 PF05971 RNA methyltransferase CTT30_07240 PF04204 Homoserine O-succinyltransferase CTT30_07255 PF12792 CSS motif domain associated with EAL CTT30_07255 PF00563 EAL domain CTT30_07270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTT30_07280 PF01970 Tripartite tricarboxylate transporter TctA family CTT30_07295 PF00069 Protein kinase domain CTT30_07310 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE CTT30_07340 PF00004 ATPase family associated with various cellular activities (AAA) CTT30_07340 PF17871 AAA lid domain CTT30_07340 PF07724 AAA domain (Cdc48 subfamily) CTT30_07340 PF10431 C-terminal, D2-small domain, of ClpB protein CTT30_07365 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CTT30_07395 PF06715 Gp5 C-terminal repeat (3 copies) CTT30_07395 PF04717 Type VI secretion system, phage-baseplate injector CTT30_07415 PF00285 Citrate synthase, C-terminal domain CTT30_07420 PF00694 Aconitase C-terminal domain CTT30_07420 PF00330 Aconitase family (aconitate hydratase) CTT30_07425 PF04303 PrpF protein CTT30_07430 PF00501 AMP-binding enzyme CTT30_07430 PF13193 AMP-binding enzyme C-terminal domain CTT30_07430 PF16177 Acetyl-coenzyme A synthetase N-terminus CTT30_07450 PF04055 Radical SAM superfamily CTT30_07455 PF06508 Queuosine biosynthesis protein QueC CTT30_07470 PF00691 OmpA family CTT30_07470 PF05736 OprF membrane domain CTT30_07490 PF10672 S-adenosylmethionine-dependent methyltransferase CTT30_07490 PF17785 PUA-like domain CTT30_07495 PF12729 Four helix bundle sensory module for signal transduction CTT30_07495 PF00672 HAMP domain CTT30_07495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_07500 PF00708 Acylphosphatase CTT30_07505 PF04358 DsrC like protein CTT30_07510 PF01027 Inhibitor of apoptosis-promoting Bax1 CTT30_07515 PF00005 ABC transporter CTT30_07520 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_07525 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_07530 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTT30_07535 PF10414 Sirohaem synthase dimerisation region CTT30_07535 PF14824 Sirohaem biosynthesis protein central CTT30_07535 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CTT30_07540 PF04461 Protein of unknown function (DUF520) CTT30_07545 PF00793 DAHP synthetase I family CTT30_07550 PF05524 PEP-utilising enzyme, N-terminal CTT30_07550 PF00391 PEP-utilising enzyme, mobile domain CTT30_07550 PF02896 PEP-utilising enzyme, TIM barrel domain CTT30_07570 PF01189 16S rRNA methyltransferase RsmB/F CTT30_07570 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CTT30_07570 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CTT30_07575 PF02470 MlaD protein CTT30_07580 PF04403 Paraquat-inducible protein A CTT30_07585 PF00005 ABC transporter CTT30_07585 PF00664 ABC transporter transmembrane region CTT30_07590 PF13185 GAF domain CTT30_07595 PF04352 ProQ/FINO family CTT30_07595 PF17516 ProQ C-terminal domain CTT30_07600 PF17804 Tail specific protease N-terminal domain CTT30_07600 PF03572 Peptidase family S41 CTT30_07600 PF11818 C-terminal domain of tail specific protease (DUF3340) CTT30_07600 PF00595 PDZ domain CTT30_07610 PF11940 Domain of unknown function (DUF3458) Ig-like fold CTT30_07610 PF01433 Peptidase family M1 domain CTT30_07610 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CTT30_07620 PF05088 Bacterial NAD-glutamate dehydrogenase CTT30_07625 PF01180 Dihydroorotate dehydrogenase CTT30_07630 PF07126 Cell-division protein ZapC CTT30_07635 PF10672 S-adenosylmethionine-dependent methyltransferase CTT30_07635 PF01170 Putative RNA methylase family UPF0020 CTT30_07635 PF02926 THUMP domain CTT30_07645 PF00005 ABC transporter CTT30_07645 PF16326 ABC transporter C-terminal domain CTT30_07645 PF12848 ABC transporter CTT30_07655 PF04957 Ribosome modulation factor CTT30_07660 PF07977 FabA-like domain CTT30_07665 PF13654 AAA domain CTT30_07665 PF05362 Lon protease (S16) C-terminal proteolytic domain CTT30_07670 PF06303 MatP N-terminal domain CTT30_07670 PF17414 MatP C-terminal ribbon-helix-helix domain CTT30_07690 PF07968 Leukocidin/Hemolysin toxin family CTT30_07690 PF00652 Ricin-type beta-trefoil lectin domain CTT30_07705 PF04030 D-arabinono-1,4-lactone oxidase CTT30_07705 PF01565 FAD binding domain CTT30_07715 PF00672 HAMP domain CTT30_07715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_07715 PF12729 Four helix bundle sensory module for signal transduction CTT30_07720 PF00842 Alanine racemase, C-terminal domain CTT30_07720 PF01168 Alanine racemase, N-terminal domain CTT30_07855 PF00753 Metallo-beta-lactamase superfamily CTT30_07870 PF00115 Cytochrome C and Quinol oxidase polypeptide I CTT30_07885 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CTT30_07885 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CTT30_07895 PF00403 Heavy-metal-associated domain CTT30_07910 PF00027 Cyclic nucleotide-binding domain CTT30_07910 PF13545 Crp-like helix-turn-helix domain CTT30_07915 PF00582 Universal stress protein family CTT30_07920 PF01171 PP-loop family CTT30_07940 PF00005 ABC transporter CTT30_07940 PF08402 TOBE domain CTT30_07945 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_07950 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_07955 PF13416 Bacterial extracellular solute-binding protein CTT30_07960 PF13416 Bacterial extracellular solute-binding protein CTT30_07965 PF00990 Diguanylate cyclase, GGDEF domain CTT30_07965 PF17155 Gammaproteobacterial periplasmic sensor domain CTT30_07970 PF02146 Sir2 family CTT30_07975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_07975 PF00672 HAMP domain CTT30_07975 PF02743 Cache domain CTT30_07980 PF01551 Peptidase family M23 CTT30_07985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_07985 PF03466 LysR substrate binding domain CTT30_08000 PF03591 AzlC protein CTT30_08040 PF00005 ABC transporter CTT30_08040 PF12848 ABC transporter CTT30_08050 PF08281 Sigma-70, region 4 CTT30_08050 PF04542 Sigma-70 region 2 CTT30_08060 PF12727 PBP superfamily domain CTT30_08060 PF12728 Helix-turn-helix domain CTT30_08065 PF12804 MobA-like NTP transferase domain CTT30_08070 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CTT30_08100 PF00480 ROK family CTT30_08105 PF03942 DTW domain CTT30_08115 PF00672 HAMP domain CTT30_08115 PF17202 Single cache domain 3 CTT30_08115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_08120 PF00877 NlpC/P60 family CTT30_08130 PF03881 Fructosamine kinase CTT30_08140 PF00677 Lumazine binding domain CTT30_08145 PF01554 MatE CTT30_08185 PF00512 His Kinase A (phospho-acceptor) domain CTT30_08185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_08185 PF17149 Periplasmic sensor domain found in signal transduction proteins CTT30_08185 PF01627 Hpt domain CTT30_08185 PF00072 Response regulator receiver domain CTT30_08185 PF00672 HAMP domain CTT30_08190 PF02954 Bacterial regulatory protein, Fis family CTT30_08190 PF00072 Response regulator receiver domain CTT30_08190 PF00158 Sigma-54 interaction domain CTT30_08200 PF13439 Glycosyltransferase Family 4 CTT30_08200 PF00534 Glycosyl transferases group 1 CTT30_08235 PF00534 Glycosyl transferases group 1 CTT30_08235 PF13439 Glycosyltransferase Family 4 CTT30_08245 PF02397 Bacterial sugar transferase CTT30_08270 PF01420 Type I restriction modification DNA specificity domain CTT30_08275 PF02384 N-6 DNA Methylase CTT30_08280 PF00271 Helicase conserved C-terminal domain CTT30_08280 PF08463 EcoEI R protein C-terminal CTT30_08280 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CTT30_08280 PF04851 Type III restriction enzyme, res subunit CTT30_08325 PF13340 Putative transposase of IS4/5 family (DUF4096) CTT30_08330 PF13006 Insertion element 4 transposase N-terminal CTT30_08330 PF01609 Transposase DDE domain CTT30_08340 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CTT30_08350 PF00593 TonB dependent receptor CTT30_08350 PF07715 TonB-dependent Receptor Plug Domain CTT30_08355 PF13193 AMP-binding enzyme C-terminal domain CTT30_08355 PF00501 AMP-binding enzyme CTT30_08355 PF00550 Phosphopantetheine attachment site CTT30_08355 PF00668 Condensation domain CTT30_08360 PF00550 Phosphopantetheine attachment site CTT30_08360 PF00668 Condensation domain CTT30_08360 PF13193 AMP-binding enzyme C-terminal domain CTT30_08360 PF00501 AMP-binding enzyme CTT30_08365 PF03621 MbtH-like protein CTT30_08370 PF00005 ABC transporter CTT30_08375 PF01032 FecCD transport family CTT30_08380 PF01497 Periplasmic binding protein CTT30_08385 PF00005 ABC transporter CTT30_08390 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CTT30_08390 PF01648 4'-phosphopantetheinyl transferase superfamily CTT30_08395 PF02595 Glycerate kinase family CTT30_08400 PF17853 GGDEF-like domain CTT30_08400 PF13556 PucR C-terminal helix-turn-helix domain CTT30_08400 PF05651 Putative sugar diacid recognition CTT30_08405 PF03466 LysR substrate binding domain CTT30_08405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_08415 PF13006 Insertion element 4 transposase N-terminal CTT30_08415 PF01609 Transposase DDE domain CTT30_08420 PF06629 MltA-interacting protein MipA CTT30_08425 PF00672 HAMP domain CTT30_08425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_08425 PF00512 His Kinase A (phospho-acceptor) domain CTT30_08430 PF00072 Response regulator receiver domain CTT30_08430 PF00486 Transcriptional regulatory protein, C terminal CTT30_08445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CTT30_08445 PF14824 Sirohaem biosynthesis protein central CTT30_08445 PF10414 Sirohaem synthase dimerisation region CTT30_08450 PF01226 Formate/nitrite transporter CTT30_08455 PF13806 Rieske-like [2Fe-2S] domain CTT30_08460 PF04324 BFD-like [2Fe-2S] binding domain CTT30_08460 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CTT30_08460 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CTT30_08460 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTT30_08460 PF18267 Rubredoxin NAD+ reductase C-terminal domain CTT30_08465 PF00990 Diguanylate cyclase, GGDEF domain CTT30_08465 PF08448 PAS fold CTT30_08470 PF07687 Peptidase dimerisation domain CTT30_08470 PF01546 Peptidase family M20/M25/M40 CTT30_08500 PF13302 Acetyltransferase (GNAT) domain CTT30_08505 PF13673 Acetyltransferase (GNAT) domain CTT30_08550 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CTT30_08570 PF12431 Transcriptional regulator CTT30_08570 PF00072 Response regulator receiver domain CTT30_08575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_08575 PF00989 PAS fold CTT30_08575 PF17203 Single cache domain 3 CTT30_08575 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CTT30_08590 PF03544 Gram-negative bacterial TonB protein C-terminal CTT30_08595 PF02472 Biopolymer transport protein ExbD/TolR CTT30_08600 PF01618 MotA/TolQ/ExbB proton channel family CTT30_08605 PF01618 MotA/TolQ/ExbB proton channel family CTT30_08630 PF01259 SAICAR synthetase CTT30_08640 PF04055 Radical SAM superfamily CTT30_08645 PF11230 Protein of unknown function (DUF3029) CTT30_08650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_08650 PF00672 HAMP domain CTT30_08655 PF03989 DNA gyrase C-terminal domain, beta-propeller CTT30_08655 PF00521 DNA gyrase/topoisomerase IV, subunit A CTT30_08670 PF00317 Ribonucleotide reductase, all-alpha domain CTT30_08670 PF03477 ATP cone domain CTT30_08670 PF02867 Ribonucleotide reductase, barrel domain CTT30_08675 PF00268 Ribonucleotide reductase, small chain CTT30_08680 PF00111 2Fe-2S iron-sulfur cluster binding domain CTT30_08690 PF00994 Probable molybdopterin binding domain CTT30_08705 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CTT30_08710 PF16653 Saccharopine dehydrogenase C-terminal domain CTT30_08710 PF03435 Saccharopine dehydrogenase NADP binding domain CTT30_08715 PF00202 Aminotransferase class-III CTT30_08725 PF03422 Carbohydrate binding module (family 6) CTT30_08725 PF02412 Thrombospondin type 3 repeat CTT30_08730 PF06965 Na+/H+ antiporter 1 CTT30_08740 PF12704 MacB-like periplasmic core domain CTT30_08740 PF02687 FtsX-like permease family CTT30_08745 PF00005 ABC transporter CTT30_08750 PF01554 MatE CTT30_08755 PF11066 Protein of unknown function (DUF2867) CTT30_08755 PF13460 NAD(P)H-binding CTT30_08765 PF07690 Major Facilitator Superfamily CTT30_08770 PF00849 RNA pseudouridylate synthase CTT30_08770 PF01479 S4 domain CTT30_08775 PF04851 Type III restriction enzyme, res subunit CTT30_08775 PF00271 Helicase conserved C-terminal domain CTT30_08785 PF00072 Response regulator receiver domain CTT30_08785 PF00486 Transcriptional regulatory protein, C terminal CTT30_08790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_08815 PF00873 AcrB/AcrD/AcrF family CTT30_08820 PF13533 Biotin-lipoyl like CTT30_08840 PF00535 Glycosyl transferase family 2 CTT30_08845 PF01386 Ribosomal L25p family CTT30_08850 PF00717 Peptidase S24-like CTT30_08855 PF13438 Domain of unknown function (DUF4113) CTT30_08855 PF11799 impB/mucB/samB family C-terminal domain CTT30_08855 PF00817 impB/mucB/samB family CTT30_08860 PF00579 tRNA synthetases class I (W and Y) CTT30_08890 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CTT30_08905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_08905 PF03466 LysR substrate binding domain CTT30_08910 PF13533 Biotin-lipoyl like CTT30_08915 PF07690 Major Facilitator Superfamily CTT30_08935 PF01327 Polypeptide deformylase CTT30_08940 PF00958 GMP synthase C terminal domain CTT30_08940 PF00117 Glutamine amidotransferase class-I CTT30_08940 PF03352 Methyladenine glycosylase CTT30_08940 PF13302 Acetyltransferase (GNAT) domain CTT30_08940 PF13673 Acetyltransferase (GNAT) domain CTT30_08950 PF02264 LamB porin CTT30_08955 PF08212 Lipocalin-like domain CTT30_08965 PF03831 PhnA domain CTT30_08965 PF08274 PhnA Zinc-Ribbon CTT30_08980 PF00589 Phage integrase family CTT30_08980 PF13495 Phage integrase, N-terminal SAM-like domain CTT30_08990 PF03707 Bacterial signalling protein N terminal repeat CTT30_08990 PF00990 Diguanylate cyclase, GGDEF domain CTT30_08990 PF00563 EAL domain CTT30_09020 PF01235 Sodium:alanine symporter family CTT30_09025 PF01810 LysE type translocator CTT30_09030 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CTT30_09035 PF02581 Thiamine monophosphate synthase CTT30_09050 PF02028 BCCT, betaine/carnitine/choline family transporter CTT30_09060 PF00171 Aldehyde dehydrogenase family CTT30_09070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_09070 PF03466 LysR substrate binding domain CTT30_09075 PF00561 alpha/beta hydrolase fold CTT30_09090 PF00815 Histidinol dehydrogenase CTT30_09095 PF03328 HpcH/HpaI aldolase/citrate lyase family CTT30_09100 PF00356 Bacterial regulatory proteins, lacI family CTT30_09105 PF03480 Bacterial extracellular solute-binding protein, family 7 CTT30_09115 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CTT30_09115 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CTT30_09130 PF00474 Sodium:solute symporter family CTT30_09135 PF00356 Bacterial regulatory proteins, lacI family CTT30_09150 PF00313 'Cold-shock' DNA-binding domain CTT30_09175 PF02321 Outer membrane efflux protein CTT30_09180 PF14376 Haem-binding domain CTT30_09180 PF00034 Cytochrome c CTT30_09180 PF03150 Di-haem cytochrome c peroxidase CTT30_09185 PF09308 LuxQ, periplasmic CTT30_09185 PF00072 Response regulator receiver domain CTT30_09185 PF00512 His Kinase A (phospho-acceptor) domain CTT30_09185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_09195 PF00440 Bacterial regulatory proteins, tetR family CTT30_09205 PF09330 D-lactate dehydrogenase, membrane binding CTT30_09205 PF01565 FAD binding domain CTT30_09210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_09210 PF03466 LysR substrate binding domain CTT30_09215 PF01554 MatE CTT30_09225 PF00356 Bacterial regulatory proteins, lacI family CTT30_09225 PF13407 Periplasmic binding protein domain CTT30_09230 PF00294 pfkB family carbohydrate kinase CTT30_09270 PF03147 Ferredoxin-fold anticodon binding domain CTT30_09270 PF01588 Putative tRNA binding domain CTT30_09270 PF03484 tRNA synthetase B5 domain CTT30_09270 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CTT30_09270 PF03483 B3/4 domain CTT30_09275 PF01409 tRNA synthetases class II core domain (F) CTT30_09275 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CTT30_09300 PF07995 Glucose / Sorbosone dehydrogenase CTT30_09310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_09310 PF00512 His Kinase A (phospho-acceptor) domain CTT30_09325 PF04993 TfoX N-terminal domain CTT30_09325 PF04994 TfoX C-terminal domain CTT30_09335 PF03956 Lysine exporter LysO CTT30_09345 PF00282 Pyridoxal-dependent decarboxylase conserved domain CTT30_09350 PF01380 SIS domain CTT30_09350 PF01418 Helix-turn-helix domain, rpiR family CTT30_09355 PF00465 Iron-containing alcohol dehydrogenase CTT30_09355 PF00171 Aldehyde dehydrogenase family CTT30_09360 PF00462 Glutaredoxin CTT30_09365 PF02080 TrkA-C domain CTT30_09365 PF06826 Predicted Permease Membrane Region CTT30_09370 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_09375 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_09380 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTT30_09385 PF00005 ABC transporter CTT30_09395 PF02901 Pyruvate formate lyase-like CTT30_09395 PF01228 Glycine radical CTT30_09405 PF00672 HAMP domain CTT30_09405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_09410 PF04055 Radical SAM superfamily CTT30_09420 PF03887 YfbU domain CTT30_09425 PF08298 PrkA AAA domain CTT30_09425 PF06798 PrkA serine protein kinase C-terminal domain CTT30_09430 PF04285 Protein of unknown function (DUF444) CTT30_09435 PF04293 SpoVR like protein CTT30_09440 PF02348 Cytidylyltransferase CTT30_09445 PF03966 Trm112p-like protein CTT30_09450 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CTT30_09455 PF00005 ABC transporter CTT30_09455 PF00664 ABC transporter transmembrane region CTT30_09460 PF00753 Metallo-beta-lactamase superfamily CTT30_09460 PF03772 Competence protein CTT30_09470 PF12704 MacB-like periplasmic core domain CTT30_09470 PF02687 FtsX-like permease family CTT30_09475 PF00005 ABC transporter CTT30_09480 PF02687 FtsX-like permease family CTT30_09480 PF12704 MacB-like periplasmic core domain CTT30_09490 PF00271 Helicase conserved C-terminal domain CTT30_09490 PF00270 DEAD/DEAH box helicase CTT30_09490 PF03461 TRCF domain CTT30_09490 PF17757 UvrB interaction domain CTT30_09490 PF02559 CarD-like/TRCF domain CTT30_09505 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTT30_09510 PF05728 Uncharacterised protein family (UPF0227) CTT30_09520 PF13036 Peptidoglycan-synthase activator LpoB CTT30_09520 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CTT30_09535 PF01230 HIT domain CTT30_09540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_09540 PF00672 HAMP domain CTT30_09550 PF00392 Bacterial regulatory proteins, gntR family CTT30_09550 PF07840 FadR C-terminal domain CTT30_09560 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CTT30_09565 PF02600 Disulfide bond formation protein DsbB CTT30_09570 PF17854 FtsK alpha domain CTT30_09570 PF09397 Ftsk gamma domain CTT30_09570 PF01580 FtsK/SpoIIIE family CTT30_09570 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CTT30_09575 PF01037 Lrp/AsnC ligand binding domain CTT30_09580 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CTT30_09580 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CTT30_09585 PF04217 Protein of unknown function, DUF412 CTT30_09590 PF00871 Acetokinase family CTT30_09595 PF07085 DRTGG domain CTT30_09595 PF01515 Phosphate acetyl/butaryl transferase CTT30_09600 PF13409 Glutathione S-transferase, N-terminal domain CTT30_09605 PF00005 ABC transporter CTT30_09605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTT30_09610 PF00005 ABC transporter CTT30_09610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTT30_09615 PF12911 N-terminal TM domain of oligopeptide transport permease C CTT30_09615 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_09620 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_09625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CTT30_09635 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CTT30_09645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_09645 PF00672 HAMP domain CTT30_09645 PF02743 Cache domain CTT30_09650 PF04151 Bacterial pre-peptidase C-terminal domain CTT30_09650 PF04389 Peptidase family M28 CTT30_09655 PF00082 Subtilase family CTT30_09655 PF05922 Peptidase inhibitor I9 CTT30_09655 PF04151 Bacterial pre-peptidase C-terminal domain CTT30_09660 PF02743 Cache domain CTT30_09660 PF00672 HAMP domain CTT30_09660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_09685 PF00005 ABC transporter CTT30_09685 PF02687 FtsX-like permease family CTT30_09685 PF12704 MacB-like periplasmic core domain CTT30_09690 PF12704 MacB-like periplasmic core domain CTT30_09690 PF02687 FtsX-like permease family CTT30_09690 PF00005 ABC transporter CTT30_09695 PF02687 FtsX-like permease family CTT30_09695 PF12704 MacB-like periplasmic core domain CTT30_09705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTT30_09710 PF07504 Fungalysin/Thermolysin Propeptide Motif CTT30_09710 PF03413 Peptidase propeptide and YPEB domain CTT30_09710 PF02868 Thermolysin metallopeptidase, alpha-helical domain CTT30_09710 PF04151 Bacterial pre-peptidase C-terminal domain CTT30_09710 PF01447 Thermolysin metallopeptidase, catalytic domain CTT30_09720 PF00326 Prolyl oligopeptidase family CTT30_09720 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CTT30_09735 PF00535 Glycosyl transferase family 2 CTT30_09790 PF01544 CorA-like Mg2+ transporter protein CTT30_09815 PF00990 Diguanylate cyclase, GGDEF domain CTT30_09825 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CTT30_09830 PF09619 Type III secretion system lipoprotein chaperone (YscW) CTT30_09840 PF01037 Lrp/AsnC ligand binding domain CTT30_09840 PF13404 AsnC-type helix-turn-helix domain CTT30_09845 PF00291 Pyridoxal-phosphate dependent enzyme CTT30_09865 PF07690 Major Facilitator Superfamily CTT30_09870 PF03601 Conserved hypothetical protein 698 CTT30_09875 PF13193 AMP-binding enzyme C-terminal domain CTT30_09875 PF00501 AMP-binding enzyme CTT30_09880 PF13378 Enolase C-terminal domain-like CTT30_09885 PF00378 Enoyl-CoA hydratase/isomerase CTT30_09890 PF12697 Alpha/beta hydrolase family CTT30_09895 PF16582 Middle domain of thiamine pyrophosphate CTT30_09895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CTT30_09895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CTT30_09900 PF00425 chorismate binding enzyme CTT30_09905 PF00155 Aminotransferase class I and II CTT30_09915 PF01966 HD domain CTT30_09915 PF13286 Phosphohydrolase-associated domain CTT30_09920 PF00962 Adenosine/AMP deaminase CTT30_09935 PF00271 Helicase conserved C-terminal domain CTT30_09935 PF00270 DEAD/DEAH box helicase CTT30_09940 PF13006 Insertion element 4 transposase N-terminal CTT30_09940 PF01609 Transposase DDE domain CTT30_09945 PF08496 Peptidase family S49 N-terminal CTT30_09945 PF01343 Peptidase family S49 CTT30_09950 PF00106 short chain dehydrogenase CTT30_09955 PF00224 Pyruvate kinase, barrel domain CTT30_09955 PF02887 Pyruvate kinase, alpha/beta domain CTT30_09960 PF00480 ROK family CTT30_09965 PF00072 Response regulator receiver domain CTT30_09965 PF01584 CheW-like domain CTT30_09970 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CTT30_09980 PF01568 Molydopterin dinucleotide binding domain CTT30_09980 PF18364 Molybdopterin oxidoreductase N-terminal domain CTT30_09980 PF00384 Molybdopterin oxidoreductase CTT30_09985 PF03264 NapC/NirT cytochrome c family, N-terminal region CTT30_09990 PF06796 Periplasmic nitrate reductase protein NapE CTT30_09995 PF03649 Uncharacterised protein family (UPF0014) CTT30_10000 PF01226 Formate/nitrite transporter CTT30_10025 PF02861 Clp amino terminal domain, pathogenicity island component CTT30_10025 PF10431 C-terminal, D2-small domain, of ClpB protein CTT30_10025 PF00004 ATPase family associated with various cellular activities (AAA) CTT30_10025 PF07724 AAA domain (Cdc48 subfamily) CTT30_10025 PF17871 AAA lid domain CTT30_10030 PF02617 ATP-dependent Clp protease adaptor protein ClpS CTT30_10035 PF00313 'Cold-shock' DNA-binding domain CTT30_10040 PF03971 Monomeric isocitrate dehydrogenase CTT30_10045 PF00849 RNA pseudouridylate synthase CTT30_10050 PF00152 tRNA synthetases class II (D, K and N) CTT30_10050 PF02938 GAD domain CTT30_10050 PF01336 OB-fold nucleic acid binding domain CTT30_10055 PF01904 Protein of unknown function DUF72 CTT30_10060 PF13649 Methyltransferase domain CTT30_10065 PF08003 Protein of unknown function (DUF1698) CTT30_10070 PF08443 RimK-like ATP-grasp domain CTT30_10070 PF18030 RimK PreATP-grasp domain CTT30_10085 PF04310 MukB N-terminal CTT30_10085 PF16330 MukB hinge domain CTT30_10090 PF04288 MukE-like family CTT30_10095 PF03882 MukF winged-helix domain CTT30_10095 PF17193 MukF C-terminal domain CTT30_10095 PF17192 MukF middle domain CTT30_10100 PF13847 Methyltransferase domain CTT30_10105 PF02698 DUF218 domain CTT30_10110 PF00072 Response regulator receiver domain CTT30_10110 PF00486 Transcriptional regulatory protein, C terminal CTT30_10115 PF02613 Nitrate reductase delta subunit CTT30_10120 PF00356 Bacterial regulatory proteins, lacI family CTT30_10125 PF04994 TfoX C-terminal domain CTT30_10125 PF04993 TfoX N-terminal domain CTT30_10130 PF13006 Insertion element 4 transposase N-terminal CTT30_10130 PF01609 Transposase DDE domain CTT30_10150 PF08323 Starch synthase catalytic domain CTT30_10150 PF00534 Glycosyl transferases group 1 CTT30_10155 PF00483 Nucleotidyl transferase CTT30_10160 PF01751 Toprim domain CTT30_10160 PF01131 DNA topoisomerase CTT30_10160 PF01396 Topoisomerase DNA binding C4 zinc finger CTT30_10160 PF08272 Topoisomerase I zinc-ribbon-like CTT30_10165 PF10692 Protein of unknown function (DUF2498) CTT30_10170 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CTT30_10180 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CTT30_10185 PF04376 Arginine-tRNA-protein transferase, N terminus CTT30_10185 PF04377 Arginine-tRNA-protein transferase, C terminus CTT30_10190 PF01176 Translation initiation factor 1A / IF-1 CTT30_10195 PF00265 Thymidine kinase CTT30_10200 PF01406 tRNA synthetases class I (C) catalytic domain CTT30_10200 PF09190 DALR domain CTT30_10205 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CTT30_10210 PF00149 Calcineurin-like phosphoesterase CTT30_10215 PF08668 HDOD domain CTT30_10215 PF00563 EAL domain CTT30_10220 PF02810 SEC-C motif CTT30_10225 PF07023 Protein of unknown function (DUF1315) CTT30_10235 PF01641 SelR domain CTT30_10240 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CTT30_10240 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CTT30_10245 PF01263 Aldose 1-epimerase CTT30_10250 PF13847 Methyltransferase domain CTT30_10265 PF00245 Alkaline phosphatase CTT30_10270 PF03472 Autoinducer binding domain CTT30_10270 PF00196 Bacterial regulatory proteins, luxR family CTT30_10280 PF07690 Major Facilitator Superfamily CTT30_10290 PF00970 Oxidoreductase FAD-binding domain CTT30_10290 PF00175 Oxidoreductase NAD-binding domain CTT30_10295 PF03692 Putative zinc- or iron-chelating domain CTT30_10305 PF03692 Putative zinc- or iron-chelating domain CTT30_10310 PF13406 Transglycosylase SLT domain CTT30_10315 PF05166 YcgL domain CTT30_10320 PF03775 Septum formation inhibitor MinC, C-terminal domain CTT30_10320 PF05209 Septum formation inhibitor MinC, N-terminal domain CTT30_10325 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CTT30_10330 PF03776 Septum formation topological specificity factor MinE CTT30_10335 PF00465 Iron-containing alcohol dehydrogenase CTT30_10335 PF00171 Aldehyde dehydrogenase family CTT30_10340 PF01914 MarC family integral membrane protein CTT30_10345 PF00027 Cyclic nucleotide-binding domain CTT30_10345 PF00520 Ion transport protein CTT30_10350 PF01118 Semialdehyde dehydrogenase, NAD binding domain CTT30_10350 PF02774 Semialdehyde dehydrogenase, dimerisation domain CTT30_10355 PF03553 Na+/H+ antiporter family CTT30_10360 PF00392 Bacterial regulatory proteins, gntR family CTT30_10360 PF07702 UTRA domain CTT30_10365 PF00367 phosphotransferase system, EIIB CTT30_10365 PF02378 Phosphotransferase system, EIIC CTT30_10370 PF08244 Glycosyl hydrolases family 32 C terminal CTT30_10370 PF00251 Glycosyl hydrolases family 32 N-terminal domain CTT30_10380 PF04245 37-kD nucleoid-associated bacterial protein CTT30_10385 PF07208 Protein of unknown function (DUF1414) CTT30_10390 PF00884 Sulfatase CTT30_10390 PF11893 Domain of unknown function (DUF3413) CTT30_10410 PF00293 NUDIX domain CTT30_10410 PF13344 Haloacid dehalogenase-like hydrolase CTT30_10415 PF00850 Histone deacetylase domain CTT30_10420 PF00106 short chain dehydrogenase CTT30_10425 PF01161 Phosphatidylethanolamine-binding protein CTT30_10435 PF01131 DNA topoisomerase CTT30_10435 PF01751 Toprim domain CTT30_10440 PF00462 Glutaredoxin CTT30_10445 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CTT30_10445 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CTT30_10460 PF01451 Low molecular weight phosphotyrosine protein phosphatase CTT30_10465 PF12557 Cob(I)alamin adenosyltransferase N terminal CTT30_10465 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CTT30_10485 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CTT30_10485 PF01266 FAD dependent oxidoreductase CTT30_10495 PF05378 Hydantoinase/oxoprolinase N-terminal region CTT30_10495 PF01968 Hydantoinase/oxoprolinase CTT30_10505 PF01074 Glycosyl hydrolases family 38 N-terminal domain CTT30_10505 PF07748 Glycosyl hydrolases family 38 C-terminal domain CTT30_10505 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 CTT30_10505 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain CTT30_10505 PF09261 Alpha mannosidase middle domain CTT30_10510 PF00480 ROK family CTT30_10515 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CTT30_10525 PF00480 ROK family CTT30_10530 PF05170 AsmA family CTT30_10535 PF00485 Phosphoribulokinase / Uridine kinase family CTT30_10540 PF10609 NUBPL iron-transfer P-loop NTPase CTT30_10545 PF09334 tRNA synthetases class I (M) CTT30_10545 PF01588 Putative tRNA binding domain CTT30_10555 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CTT30_10555 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CTT30_10560 PF01048 Phosphorylase superfamily CTT30_10565 PF00403 Heavy-metal-associated domain CTT30_10570 PF01554 MatE CTT30_10575 PF00571 CBS domain CTT30_10575 PF01368 DHH family CTT30_10575 PF02272 DHHA1 domain CTT30_10575 PF01743 Poly A polymerase head domain CTT30_10585 PF00990 Diguanylate cyclase, GGDEF domain CTT30_10590 PF02391 MoaE protein CTT30_10595 PF02597 ThiS family CTT30_10600 PF01967 MoaC family CTT30_10605 PF00994 Probable molybdopterin binding domain CTT30_10610 PF04055 Radical SAM superfamily CTT30_10610 PF06463 Molybdenum Cofactor Synthesis C CTT30_10615 PF01933 Uncharacterised protein family UPF0052 CTT30_10620 PF01627 Hpt domain CTT30_10625 PF02954 Bacterial regulatory protein, Fis family CTT30_10625 PF00072 Response regulator receiver domain CTT30_10625 PF00158 Sigma-54 interaction domain CTT30_10630 PF00271 Helicase conserved C-terminal domain CTT30_10630 PF04851 Type III restriction enzyme, res subunit CTT30_10630 PF02151 UvrB/uvrC motif CTT30_10630 PF12344 Ultra-violet resistance protein B CTT30_10630 PF17757 UvrB interaction domain CTT30_10670 PF01551 Peptidase family M23 CTT30_10670 PF04225 Opacity-associated protein A LysM-like domain CTT30_10685 PF18269 T3SS EscN ATPase C-terminal domain CTT30_10685 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CTT30_10695 PF14842 FliG N-terminal domain CTT30_10695 PF01706 FliG C-terminal domain CTT30_10695 PF14841 FliG middle domain CTT30_10700 PF01514 Secretory protein of YscJ/FliF family CTT30_10700 PF08345 Flagellar M-ring protein C-terminal CTT30_10705 PF02049 Flagellar hook-basal body complex protein FliE CTT30_10710 PF02954 Bacterial regulatory protein, Fis family CTT30_10710 PF00158 Sigma-54 interaction domain CTT30_10710 PF00072 Response regulator receiver domain CTT30_10715 PF04972 BON domain CTT30_10715 PF00691 OmpA family CTT30_10725 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CTT30_10730 PF00813 FliP family CTT30_10735 PF01313 Bacterial export proteins, family 3 CTT30_10740 PF01311 Bacterial export proteins, family 1 CTT30_10745 PF01312 FlhB HrpN YscU SpaS Family CTT30_10750 PF00771 FHIPEP family CTT30_10760 PF00700 Bacterial flagellin C-terminal helical region CTT30_10760 PF00669 Bacterial flagellin N-terminal helical region CTT30_10765 PF02465 Flagellar hook-associated protein 2 N-terminus CTT30_10765 PF07196 Flagellin hook IN motif CTT30_10765 PF07195 Flagellar hook-associated protein 2 C-terminus CTT30_10770 PF02561 Flagellar protein FliS CTT30_10785 PF03748 Flagellar basal body-associated protein FliL CTT30_10790 PF04542 Sigma-70 region 2 CTT30_10790 PF04545 Sigma-70, region 4 CTT30_10795 PF01618 MotA/TolQ/ExbB proton channel family CTT30_10800 PF00691 OmpA family CTT30_10800 PF13677 Membrane MotB of proton-channel complex MotA/MotB CTT30_10825 PF10135 Rod binding protein CTT30_10825 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CTT30_10830 PF02119 Flagellar P-ring protein CTT30_10835 PF02107 Flagellar L-ring protein CTT30_10840 PF00460 Flagella basal body rod protein CTT30_10840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CTT30_10845 PF00460 Flagella basal body rod protein CTT30_10845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CTT30_10850 PF07559 Flagellar basal body protein FlaE CTT30_10850 PF00460 Flagella basal body rod protein CTT30_10850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CTT30_10855 PF13861 FlgD Tudor-like domain CTT30_10855 PF13860 FlgD Ig-like domain CTT30_10855 PF03963 Flagellar hook capping protein - N-terminal region CTT30_10860 PF00460 Flagella basal body rod protein CTT30_10860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CTT30_10865 PF00460 Flagella basal body rod protein CTT30_10885 PF01476 LysM domain CTT30_10885 PF01464 Transglycosylase SLT domain CTT30_10890 PF02508 Rnf-Nqr subunit, membrane protein CTT30_10895 PF04060 Putative Fe-S cluster CTT30_10900 PF10531 SLBB domain CTT30_10900 PF12838 4Fe-4S dicluster domain CTT30_10900 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CTT30_10900 PF13375 RnfC Barrel sandwich hybrid domain CTT30_10905 PF03116 NQR2, RnfD, RnfE family CTT30_10910 PF04205 FMN-binding domain CTT30_10915 PF02508 Rnf-Nqr subunit, membrane protein CTT30_10920 PF10576 Iron-sulfur binding domain of endonuclease III CTT30_10920 PF00633 Helix-hairpin-helix motif CTT30_10920 PF00730 HhH-GPD superfamily base excision DNA repair protein CTT30_10925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTT30_10930 PF10952 Protein of unknown function (DUF2753) CTT30_10935 PF18393 MotY N-terminal domain CTT30_10935 PF00691 OmpA family CTT30_10940 PF00929 Exonuclease CTT30_10945 PF13726 Na+-H+ antiporter family CTT30_10945 PF03553 Na+/H+ antiporter family CTT30_10950 PF06804 NlpB/DapX lipoprotein CTT30_10955 PF00701 Dihydrodipicolinate synthetase family CTT30_10960 PF01842 ACT domain CTT30_10965 PF00578 AhpC/TSA family CTT30_10970 PF02743 Cache domain CTT30_10970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_10970 PF00672 HAMP domain CTT30_10975 PF01594 AI-2E family transporter CTT30_10985 PF13181 Tetratricopeptide repeat CTT30_10985 PF01435 Peptidase family M48 CTT30_10990 PF03960 ArsC family CTT30_10995 PF03358 NADPH-dependent FMN reductase CTT30_11010 PF00860 Permease family CTT30_11015 PF04073 Aminoacyl-tRNA editing domain CTT30_11020 PF02872 5'-nucleotidase, C-terminal domain CTT30_11020 PF00149 Calcineurin-like phosphoesterase CTT30_11025 PF00793 DAHP synthetase I family CTT30_11030 PF13369 Transglutaminase-like superfamily CTT30_11040 PF13847 Methyltransferase domain CTT30_11040 PF17827 PrmC N-terminal domain CTT30_11045 PF03462 PCRF domain CTT30_11045 PF00472 RF-1 domain CTT30_11050 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CTT30_11050 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CTT30_11050 PF01488 Shikimate / quinate 5-dehydrogenase CTT30_11055 PF03550 Outer membrane lipoprotein LolB CTT30_11060 PF00288 GHMP kinases N terminal domain CTT30_11060 PF08544 GHMP kinases C terminal CTT30_11065 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CTT30_11065 PF14572 Phosphoribosyl synthetase-associated domain CTT30_11070 PF01195 Peptidyl-tRNA hydrolase CTT30_11075 PF01926 50S ribosome-binding GTPase CTT30_11075 PF06071 Protein of unknown function (DUF933) CTT30_11180 PF00700 Bacterial flagellin C-terminal helical region CTT30_11180 PF07196 Flagellin hook IN motif CTT30_11180 PF00669 Bacterial flagellin N-terminal helical region CTT30_11190 PF00669 Bacterial flagellin N-terminal helical region CTT30_11190 PF00700 Bacterial flagellin C-terminal helical region CTT30_11190 PF07196 Flagellin hook IN motif CTT30_11195 PF00669 Bacterial flagellin N-terminal helical region CTT30_11195 PF00700 Bacterial flagellin C-terminal helical region CTT30_11200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CTT30_11200 PF07196 Flagellin hook IN motif CTT30_11205 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CTT30_11205 PF10135 Rod binding protein CTT30_11210 PF02119 Flagellar P-ring protein CTT30_11215 PF02107 Flagellar L-ring protein CTT30_11220 PF00460 Flagella basal body rod protein CTT30_11220 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CTT30_11225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CTT30_11225 PF00460 Flagella basal body rod protein CTT30_11230 PF00460 Flagella basal body rod protein CTT30_11230 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CTT30_11230 PF07559 Flagellar basal body protein FlaE CTT30_11235 PF13861 FlgD Tudor-like domain CTT30_11235 PF03963 Flagellar hook capping protein - N-terminal region CTT30_11235 PF13860 FlgD Ig-like domain CTT30_11240 PF00460 Flagella basal body rod protein CTT30_11240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CTT30_11245 PF00460 Flagella basal body rod protein CTT30_11250 PF03705 CheR methyltransferase, all-alpha domain CTT30_11250 PF01739 CheR methyltransferase, SAM binding domain CTT30_11255 PF00072 Response regulator receiver domain CTT30_11255 PF01584 CheW-like domain CTT30_11265 PF04316 Anti-sigma-28 factor, FlgM CTT30_11295 PF08241 Methyltransferase domain CTT30_11305 PF00691 OmpA family CTT30_11305 PF01389 OmpA-like transmembrane domain CTT30_11310 PF00691 OmpA family CTT30_11310 PF01389 OmpA-like transmembrane domain CTT30_11315 PF00749 tRNA synthetases class I (E and Q), catalytic domain CTT30_11320 PF00403 Heavy-metal-associated domain CTT30_11330 PF01728 FtsJ-like methyltransferase CTT30_11330 PF18125 RlmM ferredoxin-like domain CTT30_11345 PF03466 LysR substrate binding domain CTT30_11345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_11350 PF02568 Thiamine biosynthesis protein (ThiI) CTT30_11350 PF02926 THUMP domain CTT30_11355 PF00691 OmpA family CTT30_11355 PF13677 Membrane MotB of proton-channel complex MotA/MotB CTT30_11360 PF01618 MotA/TolQ/ExbB proton channel family CTT30_11365 PF02609 Exonuclease VII small subunit CTT30_11370 PF00348 Polyprenyl synthetase CTT30_11375 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CTT30_11375 PF02779 Transketolase, pyrimidine binding domain CTT30_11375 PF02780 Transketolase, C-terminal domain CTT30_11380 PF00849 RNA pseudouridylate synthase CTT30_11385 PF04287 tRNA pseudouridine synthase C CTT30_11400 PF13302 Acetyltransferase (GNAT) domain CTT30_11410 PF00549 CoA-ligase CTT30_11410 PF02629 CoA binding domain CTT30_11415 PF08442 ATP-grasp domain CTT30_11415 PF00549 CoA-ligase CTT30_11420 PF02817 e3 binding domain CTT30_11420 PF00364 Biotin-requiring enzyme CTT30_11420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CTT30_11425 PF00676 Dehydrogenase E1 component CTT30_11425 PF16078 2-oxoglutarate dehydrogenase N-terminus CTT30_11425 PF02779 Transketolase, pyrimidine binding domain CTT30_11425 PF16870 2-oxoglutarate dehydrogenase C-terminal CTT30_11430 PF13085 2Fe-2S iron-sulfur cluster binding domain CTT30_11435 PF02910 Fumarate reductase flavoprotein C-term CTT30_11435 PF00890 FAD binding domain CTT30_11440 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CTT30_11445 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CTT30_11450 PF00285 Citrate synthase, C-terminal domain CTT30_11455 PF01784 NIF3 (NGG1p interacting factor 3) CTT30_11465 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CTT30_11465 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CTT30_11465 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CTT30_11465 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CTT30_11470 PF17206 SeqA protein N-terminal domain CTT30_11470 PF03925 SeqA protein C-terminal domain CTT30_11475 PF12697 Alpha/beta hydrolase family CTT30_11485 PF00258 Flavodoxin CTT30_11490 PF00533 BRCA1 C Terminus (BRCT) domain CTT30_11490 PF12826 Helix-hairpin-helix motif CTT30_11490 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CTT30_11490 PF01653 NAD-dependent DNA ligase adenylation domain CTT30_11490 PF03120 NAD-dependent DNA ligase OB-fold domain CTT30_11495 PF04354 ZipA, C-terminal FtsZ-binding domain CTT30_11505 PF00291 Pyridoxal-phosphate dependent enzyme CTT30_11510 PF00381 PTS HPr component phosphorylation site CTT30_11515 PF05524 PEP-utilising enzyme, N-terminal CTT30_11515 PF00391 PEP-utilising enzyme, mobile domain CTT30_11515 PF02896 PEP-utilising enzyme, TIM barrel domain CTT30_11520 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CTT30_11525 PF01494 FAD binding domain CTT30_11530 PF04055 Radical SAM superfamily CTT30_11530 PF01938 TRAM domain CTT30_11530 PF00919 Uncharacterized protein family UPF0004 CTT30_11535 PF02562 PhoH-like protein CTT30_11540 PF02130 Uncharacterized protein family UPF0054 CTT30_11545 PF03471 Transporter associated domain CTT30_11545 PF00571 CBS domain CTT30_11550 PF00795 Carbon-nitrogen hydrolase CTT30_11555 PF07295 Zinc-ribbon containing domain CTT30_11560 PF00133 tRNA synthetases class I (I, L, M and V) CTT30_11560 PF13603 Leucyl-tRNA synthetase, Domain 2 CTT30_11560 PF08264 Anticodon-binding domain of tRNA CTT30_11565 PF04390 Lipopolysaccharide-assembly CTT30_11570 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CTT30_11570 PF06144 DNA polymerase III, delta subunit CTT30_11580 PF02590 Predicted SPOUT methyltransferase CTT30_11585 PF03717 Penicillin-binding Protein dimerisation domain CTT30_11585 PF00905 Penicillin binding protein transpeptidase domain CTT30_11590 PF01098 Cell cycle protein CTT30_11595 PF03330 Lytic transglycolase CTT30_11595 PF05036 Sporulation related domain CTT30_11600 PF07943 Penicillin-binding protein 5, C-terminal domain CTT30_11600 PF00768 D-alanyl-D-alanine carboxypeptidase CTT30_11605 PF04359 Protein of unknown function (DUF493) CTT30_11610 PF03099 Biotin/lipoate A/B protein ligase family CTT30_11615 PF04055 Radical SAM superfamily CTT30_11615 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CTT30_11630 PF00464 Serine hydroxymethyltransferase CTT30_11640 PF00873 AcrB/AcrD/AcrF family CTT30_11645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTT30_11670 PF16657 Maltogenic Amylase, C-terminal domain CTT30_11670 PF00128 Alpha amylase, catalytic domain CTT30_11675 PF00367 phosphotransferase system, EIIB CTT30_11675 PF02378 Phosphotransferase system, EIIC CTT30_11680 PF00356 Bacterial regulatory proteins, lacI family CTT30_11695 PF00005 ABC transporter CTT30_11695 PF09383 NIL domain CTT30_11700 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_11705 PF03180 NLPA lipoprotein CTT30_11715 PF03806 AbgT putative transporter family CTT30_11720 PF00444 Ribosomal protein L36 CTT30_11725 PF01197 Ribosomal protein L31 CTT30_11730 PF18389 TrmO C-terminal domain CTT30_11730 PF01980 tRNA-methyltransferase O CTT30_11735 PF03129 Anticodon binding domain CTT30_11735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CTT30_11735 PF04073 Aminoacyl-tRNA editing domain CTT30_11740 PF13230 Glutamine amidotransferases class-II CTT30_11745 PF13580 SIS domain CTT30_11750 PF02770 Acyl-CoA dehydrogenase, middle domain CTT30_11750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTT30_11750 PF09317 Domain of unknown function (DUF1974) CTT30_11750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTT30_11760 PF00929 Exonuclease CTT30_11765 PF00075 RNase H CTT30_11770 PF08241 Methyltransferase domain CTT30_11775 PF00753 Metallo-beta-lactamase superfamily CTT30_11775 PF16123 Hydroxyacylglutathione hydrolase C-terminus CTT30_11780 PF01476 LysM domain CTT30_11780 PF01464 Transglycosylase SLT domain CTT30_11790 PF03372 Endonuclease/Exonuclease/phosphatase family CTT30_11795 PF00543 Nitrogen regulatory protein P-II CTT30_11800 PF00034 Cytochrome c CTT30_11805 PF09179 TilS substrate binding domain CTT30_11805 PF11734 TilS substrate C-terminal domain CTT30_11805 PF01171 PP-loop family CTT30_11810 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CTT30_11815 PF07733 Bacterial DNA polymerase III alpha NTPase domain CTT30_11815 PF14579 Helix-hairpin-helix motif CTT30_11815 PF02811 PHP domain CTT30_11815 PF01336 OB-fold nucleic acid binding domain CTT30_11815 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CTT30_11820 PF01351 Ribonuclease HII CTT30_11825 PF02684 Lipid-A-disaccharide synthetase CTT30_11830 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CTT30_11830 PF00132 Bacterial transferase hexapeptide (six repeats) CTT30_11835 PF07977 FabA-like domain CTT30_11840 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CTT30_11840 PF00132 Bacterial transferase hexapeptide (six repeats) CTT30_11845 PF03938 Outer membrane protein (OmpH-like) CTT30_11850 PF01103 Surface antigen CTT30_11850 PF07244 Surface antigen variable number repeat CTT30_11855 PF17820 PDZ domain CTT30_11855 PF02163 Peptidase family M50 CTT30_11860 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CTT30_11860 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CTT30_11860 PF13288 DXP reductoisomerase C-terminal domain CTT30_11870 PF01255 Putative undecaprenyl diphosphate synthase CTT30_11875 PF01765 Ribosome recycling factor CTT30_11880 PF00696 Amino acid kinase family CTT30_11885 PF00889 Elongation factor TS CTT30_11890 PF00318 Ribosomal protein S2 CTT30_11895 PF00557 Metallopeptidase family M24 CTT30_11900 PF01909 Nucleotidyltransferase domain CTT30_11900 PF01966 HD domain CTT30_11900 PF08335 GlnD PII-uridylyltransferase CTT30_11905 PF11944 Protein of unknown function (DUF3461) CTT30_11910 PF04608 Phosphatidylglycerophosphatase A CTT30_11915 PF02769 AIR synthase related protein, C-terminal domain CTT30_11915 PF00586 AIR synthase related protein, N-terminal domain CTT30_11920 PF01029 NusB family CTT30_11925 PF00885 6,7-dimethyl-8-ribityllumazine synthase CTT30_11930 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CTT30_11930 PF00925 GTP cyclohydrolase II CTT30_11935 PF00677 Lumazine binding domain CTT30_11940 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CTT30_11940 PF01872 RibD C-terminal domain CTT30_11945 PF03477 ATP cone domain CTT30_11950 PF00171 Aldehyde dehydrogenase family CTT30_11955 PF01472 PUA domain CTT30_11955 PF00696 Amino acid kinase family CTT30_11960 PF07417 Sigma factor-binding transcriptional regulator Crl CTT30_11965 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) CTT30_11970 PF00156 Phosphoribosyl transferase domain CTT30_11975 PF00860 Permease family CTT30_11980 PF07687 Peptidase dimerisation domain CTT30_11980 PF01546 Peptidase family M20/M25/M40 CTT30_11985 PF18030 RimK PreATP-grasp domain CTT30_11985 PF08443 RimK-like ATP-grasp domain CTT30_11990 PF18030 RimK PreATP-grasp domain CTT30_11990 PF08443 RimK-like ATP-grasp domain CTT30_12000 PF00209 Sodium:neurotransmitter symporter family CTT30_12005 PF00704 Glycosyl hydrolases family 18 CTT30_12005 PF06483 Chitinase C CTT30_12015 PF03449 Transcription elongation factor, N-terminal CTT30_12015 PF01272 Transcription elongation factor, GreA/GreB, C-term CTT30_12020 PF09382 RQC domain CTT30_12020 PF00570 HRDC domain CTT30_12020 PF00271 Helicase conserved C-terminal domain CTT30_12020 PF16124 RecQ zinc-binding CTT30_12020 PF00270 DEAD/DEAH box helicase CTT30_12025 PF11799 impB/mucB/samB family C-terminal domain CTT30_12025 PF00817 impB/mucB/samB family CTT30_12030 PF00072 Response regulator receiver domain CTT30_12030 PF00990 Diguanylate cyclase, GGDEF domain CTT30_12040 PF02424 ApbE family CTT30_12045 PF00970 Oxidoreductase FAD-binding domain CTT30_12045 PF00111 2Fe-2S iron-sulfur cluster binding domain CTT30_12045 PF00175 Oxidoreductase NAD-binding domain CTT30_12050 PF02508 Rnf-Nqr subunit, membrane protein CTT30_12055 PF02508 Rnf-Nqr subunit, membrane protein CTT30_12060 PF04205 FMN-binding domain CTT30_12065 PF03116 NQR2, RnfD, RnfE family CTT30_12070 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CTT30_12070 PF11973 NQRA C-terminal domain CTT30_12075 PF01722 BolA-like protein CTT30_12080 PF05175 Methyltransferase small domain CTT30_12090 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CTT30_12110 PF04545 Sigma-70, region 4 CTT30_12110 PF04542 Sigma-70 region 2 CTT30_12120 PF03502 Nucleoside-specific channel-forming protein, Tsx CTT30_12125 PF02558 Ketopantoate reductase PanE/ApbA CTT30_12125 PF08546 Ketopantoate reductase PanE/ApbA C terminal CTT30_12130 PF01965 DJ-1/PfpI family CTT30_12135 PF00266 Aminotransferase class-V CTT30_12140 PF18073 Rubredoxin metal binding domain CTT30_12150 PF18429 Domain of unknown function (DUF5609) CTT30_12160 PF01048 Phosphorylase superfamily CTT30_12165 PF01676 Metalloenzyme superfamily CTT30_12170 PF02885 Glycosyl transferase family, helical bundle domain CTT30_12170 PF00591 Glycosyl transferase family, a/b domain CTT30_12170 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CTT30_12175 PF01791 DeoC/LacD family aldolase CTT30_12185 PF07670 Nucleoside recognition CTT30_12185 PF07662 Na+ dependent nucleoside transporter C-terminus CTT30_12185 PF01773 Na+ dependent nucleoside transporter N-terminus CTT30_12190 PF01026 TatD related DNase CTT30_12195 PF03883 Peroxide stress protein YaaA CTT30_12200 PF01235 Sodium:alanine symporter family CTT30_12215 PF03167 Uracil DNA glycosylase superfamily CTT30_12220 PF01261 Xylose isomerase-like TIM barrel CTT30_12225 PF01228 Glycine radical CTT30_12230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_12230 PF03466 LysR substrate binding domain CTT30_12235 PF01925 Sulfite exporter TauE/SafE CTT30_12240 PF02142 MGS-like domain CTT30_12240 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CTT30_12240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTT30_12245 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CTT30_12245 PF00117 Glutamine amidotransferase class-I CTT30_12255 PF01113 Dihydrodipicolinate reductase, N-terminus CTT30_12255 PF05173 Dihydrodipicolinate reductase, C-terminus CTT30_12260 PF00293 NUDIX domain CTT30_12265 PF07516 SecA Wing and Scaffold domain CTT30_12265 PF02810 SEC-C motif CTT30_12265 PF07517 SecA DEAD-like domain CTT30_12265 PF01043 SecA preprotein cross-linking domain CTT30_12270 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CTT30_12275 PF12327 FtsZ family, C-terminal domain CTT30_12275 PF00091 Tubulin/FtsZ family, GTPase domain CTT30_12280 PF02491 SHS2 domain inserted in FTSA CTT30_12285 PF08478 POTRA domain, FtsQ-type CTT30_12285 PF03799 Cell division protein FtsQ CTT30_12290 PF02875 Mur ligase family, glutamate ligase domain CTT30_12290 PF01225 Mur ligase family, catalytic domain CTT30_12290 PF08245 Mur ligase middle domain CTT30_12295 PF04101 Glycosyltransferase family 28 C-terminal domain CTT30_12295 PF03033 Glycosyltransferase family 28 N-terminal domain CTT30_12300 PF01098 Cell cycle protein CTT30_12305 PF02875 Mur ligase family, glutamate ligase domain CTT30_12305 PF08245 Mur ligase middle domain CTT30_12310 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CTT30_12310 PF00953 Glycosyl transferase family 4 CTT30_12315 PF01225 Mur ligase family, catalytic domain CTT30_12315 PF08245 Mur ligase middle domain CTT30_12315 PF02875 Mur ligase family, glutamate ligase domain CTT30_12320 PF01225 Mur ligase family, catalytic domain CTT30_12320 PF02875 Mur ligase family, glutamate ligase domain CTT30_12320 PF08245 Mur ligase middle domain CTT30_12325 PF00905 Penicillin binding protein transpeptidase domain CTT30_12325 PF03717 Penicillin-binding Protein dimerisation domain CTT30_12330 PF04999 Cell division protein FtsL CTT30_12335 PF01795 MraW methylase family CTT30_12345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CTT30_12350 PF04348 LppC putative lipoprotein CTT30_12355 PF02021 Uncharacterised protein family UPF0102 CTT30_12360 PF13580 SIS domain CTT30_12365 PF04972 BON domain CTT30_12370 PF04386 Stringent starvation protein B CTT30_12375 PF02798 Glutathione S-transferase, N-terminal domain CTT30_12375 PF00043 Glutathione S-transferase, C-terminal domain CTT30_12380 PF02167 Cytochrome C1 family CTT30_12385 PF00033 Cytochrome b/b6/petB CTT30_12385 PF00032 Cytochrome b(C-terminal)/b6/petD CTT30_12390 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CTT30_12390 PF00355 Rieske [2Fe-2S] domain CTT30_12395 PF00380 Ribosomal protein S9/S16 CTT30_12400 PF00572 Ribosomal protein L13 CTT30_12405 PF03969 AFG1-like ATPase CTT30_12410 PF06295 Protein of unknown function (DUF1043) CTT30_12415 PF00595 PDZ domain CTT30_12420 PF13180 PDZ domain CTT30_12425 PF00521 DNA gyrase/topoisomerase IV, subunit A CTT30_12425 PF03989 DNA gyrase C-terminal domain, beta-propeller CTT30_12430 PF01751 Toprim domain CTT30_12430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_12430 PF00204 DNA gyrase B CTT30_12430 PF00986 DNA gyrase B subunit, carboxyl terminus CTT30_12435 PF05728 Uncharacterised protein family (UPF0227) CTT30_12440 PF00149 Calcineurin-like phosphoesterase CTT30_12445 PF06853 Protein of unknown function (DUF1249) CTT30_12450 PF00293 NUDIX domain CTT30_12455 PF02321 Outer membrane efflux protein CTT30_12465 PF00072 Response regulator receiver domain CTT30_12465 PF00989 PAS fold CTT30_12465 PF01627 Hpt domain CTT30_12465 PF18415 Histidine kinase receptor ArcB trans-membrane domain CTT30_12465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_12465 PF00512 His Kinase A (phospho-acceptor) domain CTT30_12470 PF00563 EAL domain CTT30_12470 PF00360 Phytochrome region CTT30_12470 PF00990 Diguanylate cyclase, GGDEF domain CTT30_12470 PF01590 GAF domain CTT30_12475 PF04055 Radical SAM superfamily CTT30_12475 PF16199 Radical_SAM C-terminal domain CTT30_12480 PF01493 GXGXG motif CTT30_12480 PF01645 Conserved region in glutamate synthase CTT30_12480 PF00310 Glutamine amidotransferases class-II CTT30_12480 PF04898 Glutamate synthase central domain CTT30_12485 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CTT30_12485 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTT30_12490 PF01493 GXGXG motif CTT30_12490 PF00310 Glutamine amidotransferases class-II CTT30_12490 PF01645 Conserved region in glutamate synthase CTT30_12490 PF04898 Glutamate synthase central domain CTT30_12495 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CTT30_12495 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTT30_12505 PF09157 Pseudouridine synthase II TruB, C-terminal CTT30_12505 PF16198 tRNA pseudouridylate synthase B C-terminal domain CTT30_12505 PF01509 TruB family pseudouridylate synthase (N terminal domain) CTT30_12510 PF02033 Ribosome-binding factor A CTT30_12515 PF04760 Translation initiation factor IF-2, N-terminal region CTT30_12515 PF00009 Elongation factor Tu GTP binding domain CTT30_12515 PF08364 Bacterial translation initiation factor IF-2 associated region CTT30_12515 PF11987 Translation-initiation factor 2 CTT30_12520 PF08529 NusA N-terminal domain CTT30_12520 PF13184 NusA-like KH domain CTT30_12520 PF00575 S1 RNA binding domain CTT30_12525 PF17384 RimP C-terminal SH3 domain CTT30_12525 PF02576 RimP N-terminal domain CTT30_12615 PF03840 Preprotein translocase SecG subunit CTT30_12620 PF13508 Acetyltransferase (GNAT) domain CTT30_12625 PF02036 SCP-2 sterol transfer family CTT30_12630 PF00563 EAL domain CTT30_12630 PF00990 Diguanylate cyclase, GGDEF domain CTT30_12630 PF03707 Bacterial signalling protein N terminal repeat CTT30_12635 PF01136 Peptidase family U32 CTT30_12640 PF01136 Peptidase family U32 CTT30_12645 PF01336 OB-fold nucleic acid binding domain CTT30_12645 PF00152 tRNA synthetases class II (D, K and N) CTT30_12655 PF05525 Branched-chain amino acid transport protein CTT30_12660 PF05175 Methyltransferase small domain CTT30_12665 PF00270 DEAD/DEAH box helicase CTT30_12665 PF00271 Helicase conserved C-terminal domain CTT30_12670 PF16658 Class II release factor RF3, C-terminal domain CTT30_12670 PF03144 Elongation factor Tu domain 2 CTT30_12670 PF00009 Elongation factor Tu GTP binding domain CTT30_12675 PF00563 EAL domain CTT30_12675 PF00990 Diguanylate cyclase, GGDEF domain CTT30_12675 PF03707 Bacterial signalling protein N terminal repeat CTT30_12680 PF00583 Acetyltransferase (GNAT) family CTT30_12690 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CTT30_12690 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CTT30_12690 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CTT30_12690 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CTT30_12695 PF00809 Pterin binding enzyme CTT30_12700 PF01434 Peptidase family M41 CTT30_12700 PF06480 FtsH Extracellular CTT30_12700 PF17862 AAA+ lid domain CTT30_12700 PF00004 ATPase family associated with various cellular activities (AAA) CTT30_12705 PF01728 FtsJ-like methyltransferase CTT30_12710 PF01985 CRS1 / YhbY (CRM) domain CTT30_12715 PF03449 Transcription elongation factor, N-terminal CTT30_12715 PF01272 Transcription elongation factor, GreA/GreB, C-term CTT30_12720 PF13609 Gram-negative porin CTT30_12725 PF00873 AcrB/AcrD/AcrF family CTT30_12735 PF01521 Iron-sulphur cluster biosynthesis CTT30_12740 PF00202 Aminotransferase class-III CTT30_12750 PF01594 AI-2E family transporter CTT30_12755 PF05175 Methyltransferase small domain CTT30_12755 PF08468 Methyltransferase small domain N-terminal CTT30_12760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_12760 PF00512 His Kinase A (phospho-acceptor) domain CTT30_12760 PF00072 Response regulator receiver domain CTT30_12760 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTT30_12765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CTT30_12770 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_12775 PF12911 N-terminal TM domain of oligopeptide transport permease C CTT30_12775 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_12780 PF00005 ABC transporter CTT30_12780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTT30_12785 PF00005 ABC transporter CTT30_12785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTT30_12795 PF01869 BadF/BadG/BcrA/BcrD ATPase family CTT30_12800 PF02838 Glycosyl hydrolase family 20, domain 2 CTT30_12800 PF00728 Glycosyl hydrolase family 20, catalytic domain CTT30_12805 PF06165 Glycosyltransferase family 36 CTT30_12805 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CTT30_12810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CTT30_12810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CTT30_12810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CTT30_12810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CTT30_12815 PF08402 TOBE domain CTT30_12815 PF00005 ABC transporter CTT30_12825 PF13416 Bacterial extracellular solute-binding protein CTT30_12830 PF00909 Ammonium Transporter Family CTT30_12835 PF00543 Nitrogen regulatory protein P-II CTT30_12840 PF06062 Uncharacterised protein family (UPF0231) CTT30_12845 PF00330 Aconitase family (aconitate hydratase) CTT30_12845 PF11791 Aconitate B N-terminal domain CTT30_12845 PF06434 Aconitate hydratase 2 N-terminus CTT30_12850 PF01734 Patatin-like phospholipase CTT30_12855 PF14814 Bifunctional transglycosylase second domain CTT30_12855 PF00912 Transglycosylase CTT30_12855 PF00905 Penicillin binding protein transpeptidase domain CTT30_12910 PF13737 Transposase DDE domain CTT30_12920 PF13737 Transposase DDE domain CTT30_12930 PF13737 Transposase DDE domain CTT30_12935 PF00884 Sulfatase CTT30_12940 PF00440 Bacterial regulatory proteins, tetR family CTT30_12940 PF16925 Tetracyclin repressor-like, C-terminal domain CTT30_12970 PF00271 Helicase conserved C-terminal domain CTT30_12970 PF00270 DEAD/DEAH box helicase CTT30_12970 PF04408 Helicase associated domain (HA2) CTT30_12970 PF08482 ATP-dependent helicase C-terminal CTT30_12975 PF17746 SfsA N-terminal OB domain CTT30_12975 PF03749 Sugar fermentation stimulation protein RE domain CTT30_12980 PF01258 Prokaryotic dksA/traR C4-type zinc finger CTT30_12985 PF00749 tRNA synthetases class I (E and Q), catalytic domain CTT30_12990 PF12627 Probable RNA and SrmB- binding site of polymerase A CTT30_12990 PF01743 Poly A polymerase head domain CTT30_12990 PF12626 Polymerase A arginine-rich C-terminus CTT30_12995 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CTT30_13000 PF02548 Ketopantoate hydroxymethyltransferase CTT30_13005 PF02569 Pantoate-beta-alanine ligase CTT30_13010 PF01061 ABC-2 type transporter CTT30_13015 PF00005 ABC transporter CTT30_13020 PF01740 STAS domain CTT30_13020 PF00916 Sulfate permease family CTT30_13025 PF00484 Carbonic anhydrase CTT30_13030 PF00156 Phosphoribosyl transferase domain CTT30_13035 PF00440 Bacterial regulatory proteins, tetR family CTT30_13040 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTT30_13040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CTT30_13045 PF02817 e3 binding domain CTT30_13045 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CTT30_13045 PF00364 Biotin-requiring enzyme CTT30_13050 PF00456 Transketolase, thiamine diphosphate binding domain CTT30_13050 PF17831 Pyruvate dehydrogenase E1 component middle domain CTT30_13055 PF00392 Bacterial regulatory proteins, gntR family CTT30_13055 PF07729 FCD domain CTT30_13060 PF02272 DHHA1 domain CTT30_13060 PF01368 DHH family CTT30_13060 PF17768 RecJ OB domain CTT30_13065 PF13098 Thioredoxin-like domain CTT30_13065 PF10411 Disulfide bond isomerase protein N-terminus CTT30_13070 PF00589 Phage integrase family CTT30_13070 PF02899 Phage integrase, N-terminal SAM-like domain CTT30_13075 PF00258 Flavodoxin CTT30_13080 PF01510 N-acetylmuramoyl-L-alanine amidase CTT30_13085 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CTT30_13085 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CTT30_13090 PF00114 Pilin (bacterial filament) CTT30_13090 PF07963 Prokaryotic N-terminal methylation motif CTT30_13095 PF00437 Type II/IV secretion system protein CTT30_13095 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CTT30_13100 PF00482 Type II secretion system (T2SS), protein F CTT30_13105 PF06750 Bacterial Peptidase A24 N-terminal domain CTT30_13105 PF01478 Type IV leader peptidase family CTT30_13110 PF01121 Dephospho-CoA kinase CTT30_13115 PF07072 Cell division protein CTT30_13120 PF03884 DNA gyrase inhibitor YacG CTT30_13125 PF01245 Ribosomal protein L19 CTT30_13130 PF01746 tRNA (Guanine-1)-methyltransferase CTT30_13135 PF05239 PRC-barrel domain CTT30_13135 PF01782 RimM N-terminal domain CTT30_13140 PF00886 Ribosomal protein S16 CTT30_13145 PF00448 SRP54-type protein, GTPase domain CTT30_13145 PF02881 SRP54-type protein, helical bundle domain CTT30_13145 PF02978 Signal peptide binding domain CTT30_13150 PF01578 Cytochrome C assembly protein CTT30_13155 PF00571 CBS domain CTT30_13155 PF03471 Transporter associated domain CTT30_13155 PF01595 Cyclin M transmembrane N-terminal domain CTT30_13160 PF04545 Sigma-70, region 4 CTT30_13160 PF04542 Sigma-70 region 2 CTT30_13160 PF04539 Sigma-70 region 3 CTT30_13160 PF00140 Sigma-70 factor, region 1.2 CTT30_13165 PF01476 LysM domain CTT30_13165 PF01551 Peptidase family M23 CTT30_13175 PF01975 Survival protein SurE CTT30_13180 PF01142 tRNA pseudouridine synthase D (TruD) CTT30_13185 PF02542 YgbB family CTT30_13190 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTT30_13195 PF04977 Septum formation initiator CTT30_13200 PF02673 Bacitracin resistance protein BacA CTT30_13205 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CTT30_13210 PF02152 Dihydroneopterin aldolase CTT30_13215 PF02660 Glycerol-3-phosphate acyltransferase CTT30_13220 PF00561 alpha/beta hydrolase fold CTT30_13225 PF13006 Insertion element 4 transposase N-terminal CTT30_13225 PF01609 Transposase DDE domain CTT30_13230 PF00814 Glycoprotease family CTT30_13235 PF01165 Ribosomal protein S21 CTT30_13240 PF09424 Yqey-like protein CTT30_13245 PF01807 CHC2 zinc finger CTT30_13245 PF08275 DNA primase catalytic core, N-terminal domain CTT30_13245 PF10410 DnaB-helicase binding domain of primase CTT30_13245 PF08278 DNA primase DnaG DnaB-binding CTT30_13250 PF04546 Sigma-70, non-essential region CTT30_13250 PF03979 Sigma-70 factor, region 1.1 CTT30_13250 PF04539 Sigma-70 region 3 CTT30_13250 PF04542 Sigma-70 region 2 CTT30_13250 PF04545 Sigma-70, region 4 CTT30_13250 PF00140 Sigma-70 factor, region 1.2 CTT30_13260 PF00226 DnaJ domain CTT30_13260 PF05099 Tellurite resistance protein TerB CTT30_13265 PF04453 LPS transport system D CTT30_13265 PF03968 OstA-like protein CTT30_13270 PF09312 SurA N-terminal domain CTT30_13275 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CTT30_13280 PF00398 Ribosomal RNA adenine dimethylase CTT30_13285 PF04379 ApaG domain CTT30_13290 PF00149 Calcineurin-like phosphoesterase CTT30_13295 PF00186 Dihydrofolate reductase CTT30_13300 PF12821 Threonine/Serine exporter, ThrE CTT30_13305 PF06738 Putative threonine/serine exporter CTT30_13310 PF01926 50S ribosome-binding GTPase CTT30_13310 PF01018 GTP1/OBG CTT30_13315 PF01016 Ribosomal L27 protein CTT30_13320 PF00829 Ribosomal prokaryotic L21 protein CTT30_13325 PF00348 Polyprenyl synthetase CTT30_13380 PF00072 Response regulator receiver domain CTT30_13395 PF00145 C-5 cytosine-specific DNA methylase CTT30_13430 PF02899 Phage integrase, N-terminal SAM-like domain CTT30_13430 PF00589 Phage integrase family CTT30_13495 PF02664 S-Ribosylhomocysteinase (LuxS) CTT30_13505 PF04262 Glutamate-cysteine ligase CTT30_13510 PF00675 Insulinase (Peptidase family M16) CTT30_13510 PF05193 Peptidase M16 inactive domain CTT30_13515 PF09335 SNARE associated Golgi protein CTT30_13520 PF08240 Alcohol dehydrogenase GroES-like domain CTT30_13520 PF00107 Zinc-binding dehydrogenase CTT30_13525 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CTT30_13530 PF00364 Biotin-requiring enzyme CTT30_13530 PF00682 HMGL-like CTT30_13530 PF02436 Conserved carboxylase domain CTT30_13535 PF04277 Oxaloacetate decarboxylase, gamma chain CTT30_13580 PF02599 Global regulator protein family CTT30_13585 PF00696 Amino acid kinase family CTT30_13585 PF01842 ACT domain CTT30_13585 PF13840 ACT domain CTT30_13590 PF02272 DHHA1 domain CTT30_13590 PF01411 tRNA synthetases class II (A) CTT30_13590 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CTT30_13595 PF02631 RecX family CTT30_13600 PF00154 recA bacterial DNA recombination protein CTT30_13605 PF02464 Competence-damaged protein CTT30_13610 PF05190 MutS family domain IV CTT30_13610 PF01624 MutS domain I CTT30_13610 PF05188 MutS domain II CTT30_13610 PF05192 MutS domain III CTT30_13610 PF00488 MutS domain V CTT30_13615 PF03739 Lipopolysaccharide export system permease LptF/LptG CTT30_13620 PF03739 Lipopolysaccharide export system permease LptF/LptG CTT30_13625 PF02789 Cytosol aminopeptidase family, N-terminal domain CTT30_13625 PF00883 Cytosol aminopeptidase family, catalytic domain CTT30_13630 PF04364 DNA polymerase III chi subunit, HolC CTT30_13635 PF08264 Anticodon-binding domain of tRNA CTT30_13635 PF00133 tRNA synthetases class I (I, L, M and V) CTT30_13635 PF10458 Valyl tRNA synthetase tRNA binding arm CTT30_13645 PF05987 Bacterial protein of unknown function (DUF898) CTT30_13655 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CTT30_13655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CTT30_13660 PF00849 RNA pseudouridylate synthase CTT30_13670 PF00271 Helicase conserved C-terminal domain CTT30_13670 PF12137 RNA polymerase recycling family C-terminal CTT30_13670 PF00176 SNF2 family N-terminal domain CTT30_13670 PF18339 RapA N-terminal Tudor like domain 1 CTT30_13670 PF18337 RapA N-terminal Tudor like domain CTT30_13675 PF02562 PhoH-like protein CTT30_13675 PF13638 PIN domain CTT30_13680 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CTT30_13680 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CTT30_13685 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CTT30_13685 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CTT30_13690 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CTT30_13690 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CTT30_13695 PF01042 Endoribonuclease L-PSP CTT30_13700 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CTT30_13700 PF00056 lactate/malate dehydrogenase, NAD binding domain CTT30_13705 PF01316 Arginine repressor, DNA binding domain CTT30_13705 PF02863 Arginine repressor, C-terminal domain CTT30_13710 PF16868 NMT1-like family CTT30_13720 PF00582 Universal stress protein family CTT30_13735 PF06877 Regulator of ribonuclease activity B CTT30_13745 PF00266 Aminotransferase class-V CTT30_13750 PF01842 ACT domain CTT30_13750 PF00696 Amino acid kinase family CTT30_13755 PF01523 Putative modulator of DNA gyrase CTT30_13760 PF04751 Protein of unknown function (DUF615) CTT30_13765 PF01553 Acyltransferase CTT30_13770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CTT30_13775 PF01722 BolA-like protein CTT30_13785 PF05494 MlaC protein CTT30_13790 PF02470 MlaD protein CTT30_13795 PF02405 Permease MlaE CTT30_13800 PF00005 ABC transporter CTT30_13805 PF01699 Sodium/calcium exchanger protein CTT30_13810 PF00571 CBS domain CTT30_13810 PF01380 SIS domain CTT30_13825 PF03968 OstA-like protein CTT30_13830 PF00005 ABC transporter CTT30_13830 PF12399 Branched-chain amino acid ATP-binding cassette transporter CTT30_13835 PF00309 Sigma-54 factor, Activator interacting domain (AID) CTT30_13835 PF04963 Sigma-54 factor, core binding domain CTT30_13835 PF04552 Sigma-54, DNA binding domain CTT30_13840 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CTT30_13845 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CTT30_13850 PF03668 P-loop ATPase protein family CTT30_13855 PF00381 PTS HPr component phosphorylation site CTT30_13860 PF01769 Divalent cation transporter CTT30_13860 PF00571 CBS domain CTT30_13860 PF03448 MgtE intracellular N domain CTT30_13865 PF02574 Homocysteine S-methyltransferase CTT30_13865 PF00809 Pterin binding enzyme CTT30_13865 PF02965 Vitamin B12 dependent methionine synthase, activation domain CTT30_13865 PF02310 B12 binding domain CTT30_13865 PF02607 B12 binding domain CTT30_13870 PF00999 Sodium/hydrogen exchanger family CTT30_13940 PF01507 Phosphoadenosine phosphosulfate reductase family CTT30_13945 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CTT30_13945 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CTT30_13950 PF00258 Flavodoxin CTT30_13950 PF00667 FAD binding domain CTT30_13950 PF00175 Oxidoreductase NAD-binding domain CTT30_13970 PF01207 Dihydrouridine synthase (Dus) CTT30_13975 PF00072 Response regulator receiver domain CTT30_13980 PF00072 Response regulator receiver domain CTT30_13980 PF01627 Hpt domain CTT30_13980 PF00672 HAMP domain CTT30_13980 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CTT30_13980 PF00512 His Kinase A (phospho-acceptor) domain CTT30_13980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_13985 PF01475 Ferric uptake regulator family CTT30_14000 PF03600 Citrate transporter CTT30_14000 PF02080 TrkA-C domain CTT30_14005 PF00009 Elongation factor Tu GTP binding domain CTT30_14010 PF01507 Phosphoadenosine phosphosulfate reductase family CTT30_14015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CTT30_14015 PF14824 Sirohaem biosynthesis protein central CTT30_14015 PF10414 Sirohaem synthase dimerisation region CTT30_14020 PF00149 Calcineurin-like phosphoesterase CTT30_14020 PF02872 5'-nucleotidase, C-terminal domain CTT30_14030 PF13673 Acetyltransferase (GNAT) domain CTT30_14045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTT30_14045 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CTT30_14055 PF01196 Ribosomal protein L17 CTT30_14060 PF01000 RNA polymerase Rpb3/RpoA insert domain CTT30_14060 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CTT30_14060 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CTT30_14065 PF00163 Ribosomal protein S4/S9 N-terminal domain CTT30_14065 PF01479 S4 domain CTT30_14070 PF00411 Ribosomal protein S11 CTT30_14075 PF00416 Ribosomal protein S13/S18 CTT30_14080 PF00444 Ribosomal protein L36 CTT30_14085 PF00344 SecY translocase CTT30_14090 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CTT30_14095 PF00327 Ribosomal protein L30p/L7e CTT30_14100 PF00333 Ribosomal protein S5, N-terminal domain CTT30_14100 PF03719 Ribosomal protein S5, C-terminal domain CTT30_14105 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CTT30_14110 PF00347 Ribosomal protein L6 CTT30_14115 PF00410 Ribosomal protein S8 CTT30_14120 PF00253 Ribosomal protein S14p/S29e CTT30_14125 PF00673 ribosomal L5P family C-terminus CTT30_14125 PF00281 Ribosomal protein L5 CTT30_14130 PF00467 KOW motif CTT30_14130 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CTT30_14135 PF00238 Ribosomal protein L14p/L23e CTT30_14140 PF00366 Ribosomal protein S17 CTT30_14145 PF00831 Ribosomal L29 protein CTT30_14150 PF00252 Ribosomal protein L16p/L10e CTT30_14155 PF07650 KH domain CTT30_14155 PF00189 Ribosomal protein S3, C-terminal domain CTT30_14160 PF00237 Ribosomal protein L22p/L17e CTT30_14165 PF00203 Ribosomal protein S19 CTT30_14170 PF03947 Ribosomal Proteins L2, C-terminal domain CTT30_14170 PF00181 Ribosomal Proteins L2, RNA binding domain CTT30_14175 PF00276 Ribosomal protein L23 CTT30_14180 PF00573 Ribosomal protein L4/L1 family CTT30_14185 PF00297 Ribosomal protein L3 CTT30_14190 PF00338 Ribosomal protein S10p/S20e CTT30_14195 PF08032 RNA 2'-O ribose methyltransferase substrate binding CTT30_14195 PF00588 SpoU rRNA Methylase family CTT30_14200 PF08461 Ribonuclease R winged-helix domain CTT30_14200 PF08206 Ribonuclease B OB domain CTT30_14200 PF00773 RNB domain CTT30_14200 PF00575 S1 RNA binding domain CTT30_14200 PF17876 Cold shock domain CTT30_14205 PF01979 Amidohydrolase family CTT30_14210 PF08238 Sel1 repeat CTT30_14215 PF00709 Adenylosuccinate synthetase CTT30_14220 PF01112 Asparaginase CTT30_14225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTT30_14235 PF02254 TrkA-N domain CTT30_14235 PF00999 Sodium/hydrogen exchanger family CTT30_14240 PF02525 Flavodoxin-like fold CTT30_14245 PF00005 ABC transporter CTT30_14245 PF12848 ABC transporter CTT30_14255 PF00561 alpha/beta hydrolase fold CTT30_14260 PF06794 Uncharacterised protein family (UPF0270) CTT30_14265 PF00485 Phosphoribulokinase / Uridine kinase family CTT30_14270 PF00027 Cyclic nucleotide-binding domain CTT30_14270 PF13545 Crp-like helix-turn-helix domain CTT30_14280 PF00672 HAMP domain CTT30_14280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_14290 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CTT30_14290 PF01676 Metalloenzyme superfamily CTT30_14295 PF01551 Peptidase family M23 CTT30_14305 PF08360 QacR-like protein, C-terminal region CTT30_14305 PF00440 Bacterial regulatory proteins, tetR family CTT30_14310 PF01208 Uroporphyrinogen decarboxylase (URO-D) CTT30_14315 PF00293 NUDIX domain CTT30_14315 PF09297 NADH pyrophosphatase zinc ribbon domain CTT30_14320 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CTT30_14325 PF03606 C4-dicarboxylate anaerobic carrier CTT30_14335 PF00696 Amino acid kinase family CTT30_14340 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CTT30_14340 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CTT30_14345 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CTT30_14345 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CTT30_14350 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CTT30_14350 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CTT30_14355 PF01316 Arginine repressor, DNA binding domain CTT30_14355 PF02863 Arginine repressor, C-terminal domain CTT30_14360 PF11412 Disulphide bond corrector protein DsbC CTT30_14360 PF02683 Cytochrome C biogenesis protein transmembrane region CTT30_14365 PF00196 Bacterial regulatory proteins, luxR family CTT30_14365 PF00072 Response regulator receiver domain CTT30_14370 PF01914 MarC family integral membrane protein CTT30_14380 PF00474 Sodium:solute symporter family CTT30_14400 PF00121 Triosephosphate isomerase CTT30_14405 PF01554 MatE CTT30_14410 PF03737 Aldolase/RraA CTT30_14415 PF01040 UbiA prenyltransferase family CTT30_14420 PF08207 Elongation factor P (EF-P) KOW-like domain CTT30_14420 PF09285 Elongation factor P, C-terminal CTT30_14420 PF01132 Elongation factor P (EF-P) OB domain CTT30_14425 PF04055 Radical SAM superfamily CTT30_14435 PF02308 MgtC family CTT30_14440 PF00365 Phosphofructokinase CTT30_14445 PF16916 Dimerisation domain of Zinc Transporter CTT30_14445 PF01545 Cation efflux family CTT30_14455 PF00486 Transcriptional regulatory protein, C terminal CTT30_14455 PF00072 Response regulator receiver domain CTT30_14460 PF16527 Two-component sensor protein CpxA, periplasmic domain CTT30_14460 PF00512 His Kinase A (phospho-acceptor) domain CTT30_14460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_14460 PF00672 HAMP domain CTT30_14465 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CTT30_14465 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CTT30_14470 PF00588 SpoU rRNA Methylase family CTT30_14475 PF00579 tRNA synthetases class I (W and Y) CTT30_14480 PF13419 Haloacid dehalogenase-like hydrolase CTT30_14485 PF00834 Ribulose-phosphate 3 epimerase family CTT30_14490 PF02086 D12 class N6 adenine-specific DNA methyltransferase CTT30_14500 PF01761 3-dehydroquinate synthase CTT30_14505 PF01202 Shikimate kinase CTT30_14510 PF11741 AMIN domain CTT30_14510 PF03958 Bacterial type II/III secretion system short domain CTT30_14510 PF07660 Secretin and TonB N terminus short domain CTT30_14510 PF00263 Bacterial type II and III secretion system protein CTT30_14525 PF05137 Fimbrial assembly protein (PilN) CTT30_14535 PF00905 Penicillin binding protein transpeptidase domain CTT30_14535 PF17092 Penicillin-binding protein OB-like domain CTT30_14535 PF00912 Transglycosylase CTT30_14540 PF03466 LysR substrate binding domain CTT30_14540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_14545 PF00462 Glutaredoxin CTT30_14545 PF08534 Redoxin CTT30_14550 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTT30_14550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CTT30_14555 PF01042 Endoribonuclease L-PSP CTT30_14565 PF14698 Argininosuccinate lyase C-terminal CTT30_14565 PF00583 Acetyltransferase (GNAT) family CTT30_14565 PF00206 Lyase CTT30_14570 PF00764 Arginosuccinate synthase CTT30_14575 PF00696 Amino acid kinase family CTT30_14580 PF01118 Semialdehyde dehydrogenase, NAD binding domain CTT30_14580 PF02774 Semialdehyde dehydrogenase, dimerisation domain CTT30_14585 PF01546 Peptidase family M20/M25/M40 CTT30_14585 PF07687 Peptidase dimerisation domain CTT30_14650 PF01177 Asp/Glu/Hydantoin racemase CTT30_14660 PF00593 TonB dependent receptor CTT30_14660 PF07715 TonB-dependent Receptor Plug Domain CTT30_14670 PF05958 tRNA (Uracil-5-)-methyltransferase CTT30_14680 PF00440 Bacterial regulatory proteins, tetR family CTT30_14685 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CTT30_14685 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTT30_14690 PF01554 MatE CTT30_14700 PF01726 LexA DNA binding domain CTT30_14700 PF00717 Peptidase S24-like CTT30_14710 PF01219 Prokaryotic diacylglycerol kinase CTT30_14715 PF01553 Acyltransferase CTT30_14725 PF04345 Chorismate lyase CTT30_14730 PF03748 Flagellar basal body-associated protein FliL CTT30_14735 PF01694 Rhomboid family CTT30_14735 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CTT30_14740 PF00581 Rhodanese-like domain CTT30_14745 PF04542 Sigma-70 region 2 CTT30_14745 PF00140 Sigma-70 factor, region 1.2 CTT30_14745 PF04545 Sigma-70, region 4 CTT30_14750 PF18075 FtsX extracellular domain CTT30_14755 PF00005 ABC transporter CTT30_14760 PF02881 SRP54-type protein, helical bundle domain CTT30_14760 PF00448 SRP54-type protein, GTPase domain CTT30_14775 PF01914 MarC family integral membrane protein CTT30_14825 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CTT30_14825 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CTT30_14830 PF01022 Bacterial regulatory protein, arsR family CTT30_14835 PF08668 HDOD domain CTT30_14835 PF00563 EAL domain CTT30_14840 PF01810 LysE type translocator CTT30_14845 PF12146 Serine aminopeptidase, S33 CTT30_14865 PF03942 DTW domain CTT30_14870 PF13419 Haloacid dehalogenase-like hydrolase CTT30_14875 PF02899 Phage integrase, N-terminal SAM-like domain CTT30_14875 PF00589 Phage integrase family CTT30_14885 PF01678 Diaminopimelate epimerase CTT30_14890 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CTT30_14890 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CTT30_14900 PF01491 Frataxin-like domain CTT30_14905 PF12633 Adenylate cyclase NT domain CTT30_14905 PF01295 Adenylate cyclase, class-I CTT30_14910 PF03900 Porphobilinogen deaminase, C-terminal domain CTT30_14910 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CTT30_14915 PF02602 Uroporphyrinogen-III synthase HemD CTT30_14920 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CTT30_14925 PF07219 HemY protein N-terminus CTT30_14955 PF00175 Oxidoreductase NAD-binding domain CTT30_14960 PF00970 Oxidoreductase FAD-binding domain CTT30_14960 PF00111 2Fe-2S iron-sulfur cluster binding domain CTT30_14960 PF00175 Oxidoreductase NAD-binding domain CTT30_14965 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CTT30_14975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CTT30_14975 PF07498 Rho termination factor, N-terminal domain CTT30_14975 PF07497 Rho termination factor, RNA-binding domain CTT30_14980 PF00085 Thioredoxin CTT30_14985 PF00271 Helicase conserved C-terminal domain CTT30_14985 PF00270 DEAD/DEAH box helicase CTT30_14990 PF02541 Ppx/GppA phosphatase family CTT30_14995 PF02592 Putative vitamin uptake transporter CTT30_15005 PF09382 RQC domain CTT30_15005 PF00271 Helicase conserved C-terminal domain CTT30_15005 PF00570 HRDC domain CTT30_15005 PF16124 RecQ zinc-binding CTT30_15005 PF00270 DEAD/DEAH box helicase CTT30_15010 PF00892 EamA-like transporter family CTT30_15020 PF01810 LysE type translocator CTT30_15030 PF00580 UvrD/REP helicase N-terminal domain CTT30_15030 PF13361 UvrD-like helicase C-terminal domain CTT30_15040 PF05114 Protein of unknown function (DUF692) CTT30_15055 PF01432 Peptidase family M3 CTT30_15060 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CTT30_15065 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTT30_15065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CTT30_15080 PF01494 FAD binding domain CTT30_15085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_15085 PF03466 LysR substrate binding domain CTT30_15090 PF03306 Alpha-acetolactate decarboxylase CTT30_15095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CTT30_15095 PF00205 Thiamine pyrophosphate enzyme, central domain CTT30_15095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CTT30_15110 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CTT30_15120 PF12833 Helix-turn-helix domain CTT30_15125 PF07971 Glycosyl hydrolase family 92 CTT30_15125 PF17678 Glycosyl hydrolase family 92 N-terminal domain CTT30_15135 PF07971 Glycosyl hydrolase family 92 CTT30_15135 PF17678 Glycosyl hydrolase family 92 N-terminal domain CTT30_15145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CTT30_15145 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CTT30_15165 PF00083 Sugar (and other) transporter CTT30_15185 PF00196 Bacterial regulatory proteins, luxR family CTT30_15185 PF00072 Response regulator receiver domain CTT30_15200 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_15200 PF12911 N-terminal TM domain of oligopeptide transport permease C CTT30_15205 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_15210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CTT30_15215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTT30_15215 PF00005 ABC transporter CTT30_15245 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CTT30_15250 PF00580 UvrD/REP helicase N-terminal domain CTT30_15250 PF13361 UvrD-like helicase C-terminal domain CTT30_15255 PF00440 Bacterial regulatory proteins, tetR family CTT30_15260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTT30_15265 PF00873 AcrB/AcrD/AcrF family CTT30_15270 PF04380 Membrane fusogenic activity CTT30_15275 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CTT30_15275 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CTT30_15280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_15280 PF03466 LysR substrate binding domain CTT30_15285 PF06969 HemN C-terminal domain CTT30_15285 PF04055 Radical SAM superfamily CTT30_15295 PF04220 Der GTPase activator (YihI) CTT30_15305 PF00034 Cytochrome c CTT30_15310 PF01926 50S ribosome-binding GTPase CTT30_15315 PF01367 5'-3' exonuclease, C-terminal SAM fold CTT30_15315 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CTT30_15315 PF00476 DNA polymerase family A CTT30_15315 PF01612 3'-5' exonuclease CTT30_15325 PF00490 Delta-aminolevulinic acid dehydratase CTT30_15330 PF01026 TatD related DNase CTT30_15335 PF00902 Sec-independent protein translocase protein (TatC) CTT30_15340 PF02416 mttA/Hcf106 family CTT30_15345 PF02416 mttA/Hcf106 family CTT30_15350 PF03109 ABC1 family CTT30_15355 PF02036 SCP-2 sterol transfer family CTT30_15360 PF01209 ubiE/COQ5 methyltransferase family CTT30_15365 PF02646 RmuC family CTT30_15375 PF08668 HDOD domain CTT30_15390 PF01117 Aerolysin toxin CTT30_15390 PF03440 Aerolysin/Pertussis toxin (APT) domain CTT30_15400 PF10625 Universal stress protein B (UspB) CTT30_15405 PF00210 Ferritin-like domain CTT30_15410 PF00582 Universal stress protein family CTT30_15415 PF00892 EamA-like transporter family CTT30_15425 PF04445 Putative SAM-dependent methyltransferase CTT30_15430 PF08448 PAS fold CTT30_15430 PF00990 Diguanylate cyclase, GGDEF domain CTT30_15430 PF00563 EAL domain CTT30_15435 PF01037 Lrp/AsnC ligand binding domain CTT30_15445 PF07690 Major Facilitator Superfamily CTT30_15450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_15450 PF03466 LysR substrate binding domain CTT30_15455 PF01321 Creatinase/Prolidase N-terminal domain CTT30_15455 PF00557 Metallopeptidase family M24 CTT30_15455 PF01321 Creatinase/Prolidase N-terminal domain CTT30_15455 PF00557 Metallopeptidase family M24 CTT30_15460 PF04055 Radical SAM superfamily CTT30_15460 PF06968 Biotin and Thiamin Synthesis associated domain CTT30_15465 PF05690 Thiazole biosynthesis protein ThiG CTT30_15475 PF00899 ThiF family CTT30_15480 PF02581 Thiamine monophosphate synthase CTT30_15485 PF13667 ThiC-associated domain CTT30_15485 PF01964 Radical SAM ThiC family CTT30_15490 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CTT30_15495 PF00394 Multicopper oxidase CTT30_15495 PF07731 Multicopper oxidase CTT30_15495 PF07732 Multicopper oxidase CTT30_15545 PF12724 Flavodoxin domain CTT30_15550 PF02386 Cation transport protein CTT30_15555 PF01205 Uncharacterized protein family UPF0029 CTT30_15555 PF09186 Domain of unknown function (DUF1949) CTT30_15560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CTT30_15560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CTT30_15560 PF00378 Enoyl-CoA hydratase/isomerase CTT30_15565 PF02803 Thiolase, C-terminal domain CTT30_15565 PF00108 Thiolase, N-terminal domain CTT30_15570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_15570 PF03466 LysR substrate binding domain CTT30_15575 PF07690 Major Facilitator Superfamily CTT30_15580 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTT30_15585 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_15590 PF00132 Bacterial transferase hexapeptide (six repeats) CTT30_15590 PF12804 MobA-like NTP transferase domain CTT30_15595 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CTT30_15595 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CTT30_15600 PF02874 ATP synthase alpha/beta family, beta-barrel domain CTT30_15600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CTT30_15605 PF00231 ATP synthase CTT30_15610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CTT30_15610 PF00306 ATP synthase alpha/beta chain, C terminal domain CTT30_15610 PF02874 ATP synthase alpha/beta family, beta-barrel domain CTT30_15615 PF00213 ATP synthase delta (OSCP) subunit CTT30_15620 PF00430 ATP synthase B/B' CF(0) CTT30_15625 PF00137 ATP synthase subunit C CTT30_15630 PF00119 ATP synthase A chain CTT30_15635 PF03899 ATP synthase I chain CTT30_15640 PF17762 HTH domain found in ParB protein CTT30_15640 PF02195 ParB-like nuclease domain CTT30_15645 PF13614 AAA domain CTT30_15650 PF02527 rRNA small subunit methyltransferase G CTT30_15655 PF13932 GidA associated domain CTT30_15655 PF01134 Glucose inhibited division protein A CTT30_15660 PF00258 Flavodoxin CTT30_15665 PF10396 GTP-binding protein TrmE N-terminus CTT30_15665 PF01926 50S ribosome-binding GTPase CTT30_15665 PF12631 MnmE helical domain CTT30_15670 PF02096 60Kd inner membrane protein CTT30_15670 PF14849 YidC periplasmic domain CTT30_15675 PF01809 Putative membrane protein insertion efficiency factor CTT30_15680 PF00825 Ribonuclease P CTT30_15685 PF00468 Ribosomal protein L34 CTT30_15690 PF00005 ABC transporter CTT30_15695 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_15700 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTT30_15705 PF18607 ParA helix turn helix domain CTT30_15705 PF13614 AAA domain CTT30_15710 PF02195 ParB-like nuclease domain CTT30_15710 PF08775 ParB family CTT30_15715 PF05127 Helicase CTT30_15715 PF13718 GNAT acetyltransferase 2 CTT30_15725 PF00072 Response regulator receiver domain CTT30_15730 PF01584 CheW-like domain CTT30_15730 PF02895 Signal transducing histidine kinase, homodimeric domain CTT30_15730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_15730 PF01627 Hpt domain CTT30_15730 PF09078 CheY binding CTT30_15735 PF01584 CheW-like domain CTT30_15740 PF01584 CheW-like domain CTT30_15745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_15745 PF02203 Tar ligand binding domain homologue CTT30_15745 PF00672 HAMP domain CTT30_15750 PF01739 CheR methyltransferase, SAM binding domain CTT30_15750 PF03705 CheR methyltransferase, all-alpha domain CTT30_15755 PF03975 CheD chemotactic sensory transduction CTT30_15760 PF00072 Response regulator receiver domain CTT30_15760 PF01339 CheB methylesterase CTT30_15765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_15765 PF00672 HAMP domain CTT30_15765 PF02743 Cache domain CTT30_15775 PF00990 Diguanylate cyclase, GGDEF domain CTT30_15775 PF00072 Response regulator receiver domain CTT30_15785 PF07690 Major Facilitator Superfamily CTT30_15795 PF00893 Small Multidrug Resistance protein CTT30_15800 PF03466 LysR substrate binding domain CTT30_15800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_15805 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_15810 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_15825 PF13419 Haloacid dehalogenase-like hydrolase CTT30_15830 PF00005 ABC transporter CTT30_15830 PF03459 TOBE domain CTT30_15830 PF17912 MalK OB fold domain CTT30_15835 PF00582 Universal stress protein family CTT30_15840 PF00232 Glycosyl hydrolase family 1 CTT30_15870 PF03466 LysR substrate binding domain CTT30_15870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_15885 PF08543 Phosphomethylpyrimidine kinase CTT30_15890 PF03070 TENA/THI-4/PQQC family CTT30_15905 PF01965 DJ-1/PfpI family CTT30_15905 PF12833 Helix-turn-helix domain CTT30_15910 PF03466 LysR substrate binding domain CTT30_15910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_15920 PF01569 PAP2 superfamily CTT30_15935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_15935 PF03466 LysR substrate binding domain CTT30_15945 PF03466 LysR substrate binding domain CTT30_15945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_15950 PF09277 Erythronolide synthase, docking CTT30_15950 PF08240 Alcohol dehydrogenase GroES-like domain CTT30_15950 PF00109 Beta-ketoacyl synthase, N-terminal domain CTT30_15950 PF02801 Beta-ketoacyl synthase, C-terminal domain CTT30_15950 PF08659 KR domain CTT30_15950 PF00550 Phosphopantetheine attachment site CTT30_15950 PF14765 Polyketide synthase dehydratase CTT30_15950 PF00698 Acyl transferase domain CTT30_15950 PF08990 Erythronolide synthase docking CTT30_15950 PF16197 Ketoacyl-synthetase C-terminal extension CTT30_15955 PF01042 Endoribonuclease L-PSP CTT30_15960 PF00892 EamA-like transporter family CTT30_15995 PF00939 Sodium:sulfate symporter transmembrane region CTT30_16005 PF07690 Major Facilitator Superfamily CTT30_16010 PF05221 S-adenosyl-L-homocysteine hydrolase CTT30_16010 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CTT30_16035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_16035 PF03466 LysR substrate binding domain CTT30_16040 PF01609 Transposase DDE domain CTT30_16040 PF13006 Insertion element 4 transposase N-terminal CTT30_16050 PF06029 AlkA N-terminal domain CTT30_16050 PF00730 HhH-GPD superfamily base excision DNA repair protein CTT30_16055 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CTT30_16055 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CTT30_16065 PF03600 Citrate transporter CTT30_16075 PF12833 Helix-turn-helix domain CTT30_16080 PF07715 TonB-dependent Receptor Plug Domain CTT30_16080 PF00593 TonB dependent receptor CTT30_16090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_16090 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CTT30_16090 PF00072 Response regulator receiver domain CTT30_16090 PF01627 Hpt domain CTT30_16090 PF00512 His Kinase A (phospho-acceptor) domain CTT30_16090 PF00672 HAMP domain CTT30_16095 PF01979 Amidohydrolase family CTT30_16105 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CTT30_16105 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CTT30_16110 PF00941 FAD binding domain in molybdopterin dehydrogenase CTT30_16110 PF03450 CO dehydrogenase flavoprotein C-terminal domain CTT30_16115 PF00392 Bacterial regulatory proteins, gntR family CTT30_16115 PF07729 FCD domain CTT30_16125 PF01979 Amidohydrolase family CTT30_16130 PF00082 Subtilase family CTT30_16130 PF05922 Peptidase inhibitor I9 CTT30_16130 PF04151 Bacterial pre-peptidase C-terminal domain CTT30_16135 PF00672 HAMP domain CTT30_16135 PF17200 Single Cache domain 2 CTT30_16135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_16150 PF10928 Protein of unknown function (DUF2810) CTT30_16160 PF00583 Acetyltransferase (GNAT) family CTT30_16165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_16165 PF03466 LysR substrate binding domain CTT30_16170 PF01609 Transposase DDE domain CTT30_16170 PF13006 Insertion element 4 transposase N-terminal CTT30_16175 PF00196 Bacterial regulatory proteins, luxR family CTT30_16175 PF17874 MalT-like TPR region CTT30_16180 PF00343 Carbohydrate phosphorylase CTT30_16185 PF02446 4-alpha-glucanotransferase CTT30_16190 PF02806 Alpha amylase, C-terminal all-beta domain CTT30_16190 PF00128 Alpha amylase, catalytic domain CTT30_16190 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CTT30_16210 PF01915 Glycosyl hydrolase family 3 C-terminal domain CTT30_16210 PF00933 Glycosyl hydrolase family 3 N terminal domain CTT30_16215 PF07075 Protein of unknown function (DUF1343) CTT30_16230 PF13340 Putative transposase of IS4/5 family (DUF4096) CTT30_16235 PF03009 Glycerophosphoryl diester phosphodiesterase family CTT30_16300 PF00005 ABC transporter CTT30_16300 PF12848 ABC transporter CTT30_16305 PF01717 Cobalamin-independent synthase, Catalytic domain CTT30_16305 PF08267 Cobalamin-independent synthase, N-terminal domain CTT30_16325 PF01638 HxlR-like helix-turn-helix CTT30_16330 PF00583 Acetyltransferase (GNAT) family CTT30_16335 PF00202 Aminotransferase class-III CTT30_16340 PF06339 Ectoine synthase CTT30_16345 PF13840 ACT domain CTT30_16345 PF00696 Amino acid kinase family CTT30_16355 PF00881 Nitroreductase family CTT30_16360 PF01418 Helix-turn-helix domain, rpiR family CTT30_16360 PF01380 SIS domain CTT30_16365 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CTT30_16370 PF09261 Alpha mannosidase middle domain CTT30_16370 PF01074 Glycosyl hydrolases family 38 N-terminal domain CTT30_16370 PF07748 Glycosyl hydrolases family 38 C-terminal domain CTT30_16375 PF00128 Alpha amylase, catalytic domain CTT30_16380 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CTT30_16380 PF02378 Phosphotransferase system, EIIC CTT30_16380 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CTT30_16400 PF00490 Delta-aminolevulinic acid dehydratase CTT30_16405 PF02803 Thiolase, C-terminal domain CTT30_16405 PF00108 Thiolase, N-terminal domain CTT30_16415 PF05853 beta-keto acid cleavage enzyme CTT30_16430 PF01758 Sodium Bile acid symporter family CTT30_16440 PF13006 Insertion element 4 transposase N-terminal CTT30_16440 PF01609 Transposase DDE domain CTT30_16455 PF03466 LysR substrate binding domain CTT30_16455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_16460 PF01039 Carboxyl transferase domain CTT30_16460 PF17848 Acetyl-coA carboxylase zinc finger domain CTT30_16470 PF02028 BCCT, betaine/carnitine/choline family transporter CTT30_16475 PF01627 Hpt domain CTT30_16475 PF00512 His Kinase A (phospho-acceptor) domain CTT30_16475 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CTT30_16475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_16475 PF00672 HAMP domain CTT30_16475 PF00072 Response regulator receiver domain CTT30_16485 PF00795 Carbon-nitrogen hydrolase CTT30_16495 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTT30_16500 PF08241 Methyltransferase domain CTT30_16520 PF07859 alpha/beta hydrolase fold CTT30_16530 PF00571 CBS domain CTT30_16530 PF00005 ABC transporter CTT30_16535 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_16545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CTT30_16545 PF12793 Sugar transport-related sRNA regulator N-term CTT30_16550 PF00881 Nitroreductase family CTT30_16555 PF01914 MarC family integral membrane protein CTT30_16565 PF03466 LysR substrate binding domain CTT30_16565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_16590 PF13629 Pilus formation protein N terminal region CTT30_16590 PF00263 Bacterial type II and III secretion system protein CTT30_16590 PF04972 BON domain CTT30_16600 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CTT30_16605 PF00437 Type II/IV secretion system protein CTT30_16655 PF02424 ApbE family CTT30_16660 PF02683 Cytochrome C biogenesis protein transmembrane region CTT30_16660 PF11412 Disulphide bond corrector protein DsbC CTT30_16665 PF00171 Aldehyde dehydrogenase family CTT30_16670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_16670 PF00672 HAMP domain CTT30_16670 PF17200 Single Cache domain 2 CTT30_16675 PF12849 PBP superfamily domain CTT30_16680 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_16685 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_16690 PF00005 ABC transporter CTT30_16695 PF00990 Diguanylate cyclase, GGDEF domain CTT30_16695 PF03707 Bacterial signalling protein N terminal repeat CTT30_16695 PF00563 EAL domain CTT30_16705 PF00375 Sodium:dicarboxylate symporter family CTT30_16710 PF03193 RsgA GTPase CTT30_16715 PF12945 Flagellar protein YcgR CTT30_16715 PF07238 PilZ domain CTT30_16720 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CTT30_16740 PF00583 Acetyltransferase (GNAT) family CTT30_16750 PF07238 PilZ domain CTT30_16750 PF12945 Flagellar protein YcgR CTT30_16765 PF13302 Acetyltransferase (GNAT) domain CTT30_16775 PF08032 RNA 2'-O ribose methyltransferase substrate binding CTT30_16775 PF00588 SpoU rRNA Methylase family CTT30_16780 PF11953 Domain of unknown function (DUF3470) CTT30_16780 PF00037 4Fe-4S binding domain CTT30_16800 PF13443 Cro/C1-type HTH DNA-binding domain CTT30_16805 PF03466 LysR substrate binding domain CTT30_16805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_16810 PF00764 Arginosuccinate synthase CTT30_16825 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CTT30_16845 PF00873 AcrB/AcrD/AcrF family CTT30_16855 PF07670 Nucleoside recognition CTT30_16860 PF00175 Oxidoreductase NAD-binding domain CTT30_16860 PF00111 2Fe-2S iron-sulfur cluster binding domain CTT30_16860 PF00970 Oxidoreductase FAD-binding domain CTT30_16865 PF03063 Prismane/CO dehydrogenase family CTT30_16875 PF03466 LysR substrate binding domain CTT30_16875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_16890 PF00158 Sigma-54 interaction domain CTT30_16890 PF01590 GAF domain CTT30_16895 PF12833 Helix-turn-helix domain CTT30_16895 PF02311 AraC-like ligand binding domain CTT30_16920 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CTT30_16930 PF03992 Antibiotic biosynthesis monooxygenase CTT30_16935 PF03733 Inner membrane component domain CTT30_16945 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTT30_16950 PF00155 Aminotransferase class I and II CTT30_16955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_16955 PF03466 LysR substrate binding domain CTT30_16960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CTT30_16970 PF04151 Bacterial pre-peptidase C-terminal domain CTT30_16970 PF02868 Thermolysin metallopeptidase, alpha-helical domain CTT30_16970 PF01447 Thermolysin metallopeptidase, catalytic domain CTT30_16970 PF07504 Fungalysin/Thermolysin Propeptide Motif CTT30_16970 PF03413 Peptidase propeptide and YPEB domain CTT30_16975 PF04389 Peptidase family M28 CTT30_16975 PF04151 Bacterial pre-peptidase C-terminal domain CTT30_16995 PF00909 Ammonium Transporter Family CTT30_17000 PF00072 Response regulator receiver domain CTT30_17010 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTT30_17010 PF04324 BFD-like [2Fe-2S] binding domain CTT30_17015 PF01266 FAD dependent oxidoreductase CTT30_17035 PF01476 LysM domain CTT30_17035 PF08525 Opacity-associated protein A N-terminal motif CTT30_17035 PF01551 Peptidase family M23 CTT30_17040 PF03922 OmpW family CTT30_17050 PF00082 Subtilase family CTT30_17055 PF12729 Four helix bundle sensory module for signal transduction CTT30_17055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_17055 PF00672 HAMP domain CTT30_17065 PF09278 MerR, DNA binding CTT30_17065 PF00376 MerR family regulatory protein CTT30_17080 PF07690 Major Facilitator Superfamily CTT30_17085 PF00474 Sodium:solute symporter family CTT30_17105 PF03358 NADPH-dependent FMN reductase CTT30_17110 PF00892 EamA-like transporter family CTT30_17120 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CTT30_17120 PF11852 Domain of unknown function (DUF3372) CTT30_17120 PF03714 Bacterial pullanase-associated domain CTT30_17120 PF18494 Pullulanase Ins domain CTT30_17120 PF17967 Pullulanase N2 domain CTT30_17135 PF14489 QueF-like protein CTT30_17135 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CTT30_17140 PF01497 Periplasmic binding protein CTT30_17140 PF12833 Helix-turn-helix domain CTT30_17145 PF00155 Aminotransferase class I and II CTT30_17150 PF00392 Bacterial regulatory proteins, gntR family CTT30_17150 PF00155 Aminotransferase class I and II CTT30_17160 PF01037 Lrp/AsnC ligand binding domain CTT30_17170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_17170 PF00672 HAMP domain CTT30_17175 PF01625 Peptide methionine sulfoxide reductase CTT30_17175 PF01641 SelR domain CTT30_17180 PF13599 Pentapeptide repeats (9 copies) CTT30_17195 PF00990 Diguanylate cyclase, GGDEF domain CTT30_17195 PF00563 EAL domain CTT30_17195 PF03707 Bacterial signalling protein N terminal repeat CTT30_17200 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CTT30_17210 PF00873 AcrB/AcrD/AcrF family CTT30_17215 PF00873 AcrB/AcrD/AcrF family CTT30_17225 PF13977 BetI-type transcriptional repressor, C-terminal CTT30_17225 PF00440 Bacterial regulatory proteins, tetR family CTT30_17240 PF00486 Transcriptional regulatory protein, C terminal CTT30_17240 PF00072 Response regulator receiver domain CTT30_17245 PF00512 His Kinase A (phospho-acceptor) domain CTT30_17245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_17245 PF00672 HAMP domain CTT30_17245 PF13426 PAS domain CTT30_17250 PF13673 Acetyltransferase (GNAT) domain CTT30_17265 PF00072 Response regulator receiver domain CTT30_17265 PF01627 Hpt domain CTT30_17265 PF00512 His Kinase A (phospho-acceptor) domain CTT30_17265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_17265 PF00672 HAMP domain CTT30_17265 PF17149 Periplasmic sensor domain found in signal transduction proteins CTT30_17275 PF00206 Lyase CTT30_17275 PF10415 Fumarase C C-terminus CTT30_17300 PF00581 Rhodanese-like domain CTT30_17300 PF17773 UPF0176 acylphosphatase like domain CTT30_17305 PF13006 Insertion element 4 transposase N-terminal CTT30_17305 PF01609 Transposase DDE domain CTT30_17325 PF00291 Pyridoxal-phosphate dependent enzyme CTT30_17335 PF00491 Arginase family CTT30_17340 PF00392 Bacterial regulatory proteins, gntR family CTT30_17340 PF00155 Aminotransferase class I and II CTT30_17345 PF01609 Transposase DDE domain CTT30_17345 PF13006 Insertion element 4 transposase N-terminal CTT30_17350 PF07885 Ion channel CTT30_17370 PF01323 DSBA-like thioredoxin domain CTT30_17380 PF01638 HxlR-like helix-turn-helix CTT30_17395 PF03795 YCII-related domain CTT30_17400 PF08281 Sigma-70, region 4 CTT30_17400 PF04542 Sigma-70 region 2 CTT30_17405 PF02798 Glutathione S-transferase, N-terminal domain CTT30_17410 PF13419 Haloacid dehalogenase-like hydrolase CTT30_17415 PF00128 Alpha amylase, catalytic domain CTT30_17435 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CTT30_17435 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CTT30_17440 PF00141 Peroxidase CTT30_17450 PF16884 N-terminal domain of oxidoreductase CTT30_17450 PF00107 Zinc-binding dehydrogenase CTT30_17455 PF16925 Tetracyclin repressor-like, C-terminal domain CTT30_17455 PF00440 Bacterial regulatory proteins, tetR family CTT30_17460 PF00990 Diguanylate cyclase, GGDEF domain CTT30_17470 PF04266 ASCH domain CTT30_17475 PF00270 DEAD/DEAH box helicase CTT30_17475 PF00271 Helicase conserved C-terminal domain CTT30_17485 PF01979 Amidohydrolase family CTT30_17500 PF00356 Bacterial regulatory proteins, lacI family CTT30_17510 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_17515 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_17520 PF03632 Glycosyl hydrolase family 65 central catalytic domain CTT30_17520 PF03636 Glycosyl hydrolase family 65, N-terminal domain CTT30_17520 PF03633 Glycosyl hydrolase family 65, C-terminal domain CTT30_17525 PF13419 Haloacid dehalogenase-like hydrolase CTT30_17530 PF00005 ABC transporter CTT30_17530 PF08402 TOBE domain CTT30_17540 PF08244 Glycosyl hydrolases family 32 C terminal CTT30_17540 PF00251 Glycosyl hydrolases family 32 N-terminal domain CTT30_17545 PF00128 Alpha amylase, catalytic domain CTT30_17550 PF00356 Bacterial regulatory proteins, lacI family CTT30_17570 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_17575 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_17580 PF17912 MalK OB fold domain CTT30_17580 PF00005 ABC transporter CTT30_17580 PF03459 TOBE domain CTT30_17585 PF14310 Fibronectin type III-like domain CTT30_17585 PF00933 Glycosyl hydrolase family 3 N terminal domain CTT30_17585 PF01915 Glycosyl hydrolase family 3 C-terminal domain CTT30_17595 PF00128 Alpha amylase, catalytic domain CTT30_17600 PF12464 Maltose acetyltransferase CTT30_17600 PF14602 Hexapeptide repeat of succinyl-transferase CTT30_17625 PF04231 Endonuclease I CTT30_17640 PF00849 RNA pseudouridylate synthase CTT30_17650 PF00756 Putative esterase CTT30_17655 PF08240 Alcohol dehydrogenase GroES-like domain CTT30_17655 PF00107 Zinc-binding dehydrogenase CTT30_17660 PF03466 LysR substrate binding domain CTT30_17660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_17665 PF07690 Major Facilitator Superfamily CTT30_17680 PF01810 LysE type translocator CTT30_17685 PF01037 Lrp/AsnC ligand binding domain CTT30_17690 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CTT30_17690 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CTT30_17690 PF02824 TGS domain CTT30_17690 PF03129 Anticodon binding domain CTT30_17695 PF05198 Translation initiation factor IF-3, N-terminal domain CTT30_17695 PF00707 Translation initiation factor IF-3, C-terminal domain CTT30_17700 PF01632 Ribosomal protein L35 CTT30_17705 PF00453 Ribosomal protein L20 CTT30_17710 PF01266 FAD dependent oxidoreductase CTT30_17730 PF00171 Aldehyde dehydrogenase family CTT30_17735 PF02954 Bacterial regulatory protein, Fis family CTT30_17735 PF00158 Sigma-54 interaction domain CTT30_17735 PF01590 GAF domain CTT30_17755 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CTT30_17755 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CTT30_17760 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CTT30_17765 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CTT30_17765 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CTT30_17770 PF01966 HD domain CTT30_17790 PF07690 Major Facilitator Superfamily CTT30_17795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_17795 PF05231 MASE1 CTT30_17795 PF07730 Histidine kinase CTT30_17800 PF00072 Response regulator receiver domain CTT30_17800 PF00196 Bacterial regulatory proteins, luxR family CTT30_17805 PF07690 Major Facilitator Superfamily CTT30_17820 PF01979 Amidohydrolase family CTT30_17825 PF03476 MOSC N-terminal beta barrel domain CTT30_17825 PF00111 2Fe-2S iron-sulfur cluster binding domain CTT30_17825 PF03476 MOSC N-terminal beta barrel domain CTT30_17825 PF03473 MOSC domain CTT30_17825 PF00111 2Fe-2S iron-sulfur cluster binding domain CTT30_17825 PF03473 MOSC domain CTT30_17830 PF03472 Autoinducer binding domain CTT30_17830 PF00196 Bacterial regulatory proteins, luxR family CTT30_17835 PF08220 DeoR-like helix-turn-helix domain CTT30_17835 PF00455 DeoR C terminal sensor domain CTT30_17855 PF05661 Protein of unknown function (DUF808) CTT30_17865 PF00128 Alpha amylase, catalytic domain CTT30_17870 PF00672 HAMP domain CTT30_17870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_17870 PF02743 Cache domain CTT30_17890 PF12849 PBP superfamily domain CTT30_17895 PF01575 MaoC like domain CTT30_17905 PF01551 Peptidase family M23 CTT30_17905 PF08525 Opacity-associated protein A N-terminal motif CTT30_17905 PF01476 LysM domain CTT30_17915 PF07690 Major Facilitator Superfamily CTT30_17920 PF00005 ABC transporter CTT30_17925 PF01032 FecCD transport family CTT30_17935 PF02472 Biopolymer transport protein ExbD/TolR CTT30_17940 PF01618 MotA/TolQ/ExbB proton channel family CTT30_17945 PF03544 Gram-negative bacterial TonB protein C-terminal CTT30_17950 PF04055 Radical SAM superfamily CTT30_17955 PF06228 Haem utilisation ChuX/HutX CTT30_17960 PF01243 Pyridoxamine 5'-phosphate oxidase CTT30_17965 PF01923 Cobalamin adenosyltransferase CTT30_17970 PF00005 ABC transporter CTT30_17970 PF08402 TOBE domain CTT30_17975 PF01547 Bacterial extracellular solute-binding protein CTT30_17980 PF14785 Maltose transport system permease protein MalF P2 domain CTT30_17980 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_17985 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_17995 PF12793 Sugar transport-related sRNA regulator N-term CTT30_17995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CTT30_18020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CTT30_18020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CTT30_18035 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CTT30_18035 PF00072 Response regulator receiver domain CTT30_18035 PF01627 Hpt domain CTT30_18035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_18035 PF00512 His Kinase A (phospho-acceptor) domain CTT30_18035 PF00672 HAMP domain CTT30_18040 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CTT30_18045 PF03741 Integral membrane protein TerC family CTT30_18050 PF07969 Amidohydrolase family CTT30_18055 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CTT30_18060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTT30_18060 PF00529 HlyD membrane-fusion protein of T1SS CTT30_18085 PF00486 Transcriptional regulatory protein, C terminal CTT30_18085 PF00072 Response regulator receiver domain CTT30_18090 PF00512 His Kinase A (phospho-acceptor) domain CTT30_18090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_18090 PF00672 HAMP domain CTT30_18100 PF00392 Bacterial regulatory proteins, gntR family CTT30_18100 PF00155 Aminotransferase class I and II CTT30_18105 PF13230 Glutamine amidotransferases class-II CTT30_18110 PF13520 Amino acid permease CTT30_18120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_18120 PF03466 LysR substrate binding domain CTT30_18130 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CTT30_18135 PF02566 OsmC-like protein CTT30_18140 PF13006 Insertion element 4 transposase N-terminal CTT30_18140 PF01609 Transposase DDE domain CTT30_18145 PF12464 Maltose acetyltransferase CTT30_18145 PF14602 Hexapeptide repeat of succinyl-transferase CTT30_18150 PF00892 EamA-like transporter family CTT30_18165 PF07584 Aerotolerance regulator N-terminal CTT30_18165 PF13519 von Willebrand factor type A domain CTT30_18170 PF07584 Aerotolerance regulator N-terminal CTT30_18170 PF00092 von Willebrand factor type A domain CTT30_18180 PF01882 Protein of unknown function DUF58 CTT30_18185 PF17863 AAA lid domain CTT30_18185 PF07726 ATPase family associated with various cellular activities (AAA) CTT30_18190 PF00672 HAMP domain CTT30_18190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_18190 PF02743 Cache domain CTT30_18215 PF00512 His Kinase A (phospho-acceptor) domain CTT30_18215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_18215 PF18719 ArlS sensor domain CTT30_18220 PF00486 Transcriptional regulatory protein, C terminal CTT30_18220 PF00072 Response regulator receiver domain CTT30_18225 PF03150 Di-haem cytochrome c peroxidase CTT30_18230 PF00072 Response regulator receiver domain CTT30_18230 PF00486 Transcriptional regulatory protein, C terminal CTT30_18235 PF00672 HAMP domain CTT30_18235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_18235 PF00512 His Kinase A (phospho-acceptor) domain CTT30_18240 PF06123 Inner membrane protein CreD CTT30_18245 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTT30_18250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_18250 PF03466 LysR substrate binding domain CTT30_18255 PF00155 Aminotransferase class I and II CTT30_18260 PF08240 Alcohol dehydrogenase GroES-like domain CTT30_18260 PF00107 Zinc-binding dehydrogenase CTT30_18265 PF00194 Eukaryotic-type carbonic anhydrase CTT30_18275 PF01773 Na+ dependent nucleoside transporter N-terminus CTT30_18275 PF07662 Na+ dependent nucleoside transporter C-terminus CTT30_18275 PF07670 Nucleoside recognition CTT30_18280 PF07687 Peptidase dimerisation domain CTT30_18280 PF01546 Peptidase family M20/M25/M40 CTT30_18305 PF00072 Response regulator receiver domain CTT30_18305 PF09456 RcsC Alpha-Beta-Loop (ABL) CTT30_18305 PF00512 His Kinase A (phospho-acceptor) domain CTT30_18305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_18310 PF00512 His Kinase A (phospho-acceptor) domain CTT30_18310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_18310 PF09456 RcsC Alpha-Beta-Loop (ABL) CTT30_18310 PF00072 Response regulator receiver domain CTT30_18315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CTT30_18315 PF00072 Response regulator receiver domain CTT30_18315 PF01627 Hpt domain CTT30_18315 PF00512 His Kinase A (phospho-acceptor) domain CTT30_18315 PF00672 HAMP domain CTT30_18315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_18325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_18325 PF03466 LysR substrate binding domain CTT30_18335 PF00501 AMP-binding enzyme CTT30_18335 PF13193 AMP-binding enzyme C-terminal domain CTT30_18340 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CTT30_18345 PF01329 Pterin 4 alpha carbinolamine dehydratase CTT30_18380 PF02355 Protein export membrane protein CTT30_18380 PF07549 SecD/SecF GG Motif CTT30_18380 PF13721 SecD export protein N-terminal TM region CTT30_18385 PF02355 Protein export membrane protein CTT30_18385 PF07549 SecD/SecF GG Motif CTT30_18405 PF00465 Iron-containing alcohol dehydrogenase CTT30_18415 PF03466 LysR substrate binding domain CTT30_18415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_18420 PF13419 Haloacid dehalogenase-like hydrolase CTT30_18445 PF13419 Haloacid dehalogenase-like hydrolase CTT30_18450 PF00202 Aminotransferase class-III CTT30_18455 PF00266 Aminotransferase class-V CTT30_18465 PF00005 ABC transporter CTT30_18470 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_18475 PF00392 Bacterial regulatory proteins, gntR family CTT30_18475 PF07702 UTRA domain CTT30_18490 PF00246 Zinc carboxypeptidase CTT30_18490 PF18027 Cytosolic carboxypeptidase N-terminal domain CTT30_18495 PF01266 FAD dependent oxidoreductase CTT30_18500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_18500 PF03466 LysR substrate binding domain CTT30_18505 PF03313 Serine dehydratase alpha chain CTT30_18505 PF03315 Serine dehydratase beta chain CTT30_18530 PF00072 Response regulator receiver domain CTT30_18530 PF01584 CheW-like domain CTT30_18545 PF00704 Glycosyl hydrolases family 18 CTT30_18545 PF08329 Chitinase A, N-terminal domain CTT30_18555 PF01212 Beta-eliminating lyase CTT30_18560 PF00293 NUDIX domain CTT30_18565 PF07728 AAA domain (dynein-related subfamily) CTT30_18565 PF12592 Protein of unknown function (DUF3763) CTT30_18565 PF17868 AAA lid domain CTT30_18570 PF05762 VWA domain containing CoxE-like protein CTT30_18590 PF01037 Lrp/AsnC ligand binding domain CTT30_18595 PF00990 Diguanylate cyclase, GGDEF domain CTT30_18595 PF08448 PAS fold CTT30_18600 PF01047 MarR family CTT30_18605 PF02028 BCCT, betaine/carnitine/choline family transporter CTT30_18620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTT30_18625 PF00873 AcrB/AcrD/AcrF family CTT30_18630 PF00291 Pyridoxal-phosphate dependent enzyme CTT30_18650 PF03222 Tryptophan/tyrosine permease family CTT30_18655 PF04336 Acyl carrier protein phosphodiesterase CTT30_18660 PF00271 Helicase conserved C-terminal domain CTT30_18660 PF00270 DEAD/DEAH box helicase CTT30_18665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_18665 PF00672 HAMP domain CTT30_18665 PF12729 Four helix bundle sensory module for signal transduction CTT30_18670 PF13419 Haloacid dehalogenase-like hydrolase CTT30_18675 PF00294 pfkB family carbohydrate kinase CTT30_18690 PF13419 Haloacid dehalogenase-like hydrolase CTT30_18705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CTT30_18705 PF01568 Molydopterin dinucleotide binding domain CTT30_18705 PF00384 Molybdopterin oxidoreductase CTT30_18710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CTT30_18710 PF14824 Sirohaem biosynthesis protein central CTT30_18710 PF10414 Sirohaem synthase dimerisation region CTT30_18715 PF02885 Glycosyl transferase family, helical bundle domain CTT30_18715 PF00591 Glycosyl transferase family, a/b domain CTT30_18720 PF00072 Response regulator receiver domain CTT30_18720 PF03861 ANTAR domain CTT30_18725 PF00005 ABC transporter CTT30_18730 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_18735 PF00005 ABC transporter CTT30_18740 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CTT30_18740 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CTT30_18740 PF18267 Rubredoxin NAD+ reductase C-terminal domain CTT30_18740 PF13806 Rieske-like [2Fe-2S] domain CTT30_18740 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTT30_18740 PF04324 BFD-like [2Fe-2S] binding domain CTT30_18745 PF00355 Rieske [2Fe-2S] domain CTT30_18750 PF03150 Di-haem cytochrome c peroxidase CTT30_18765 PF11756 Nitrous oxide-stimulated promoter CTT30_18770 PF07690 Major Facilitator Superfamily CTT30_18775 PF00085 Thioredoxin CTT30_18780 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CTT30_18780 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CTT30_18785 PF12320 Type 5 capsule protein repressor C-terminal domain CTT30_18785 PF00149 Calcineurin-like phosphoesterase CTT30_18790 PF13476 AAA domain CTT30_18795 PF00072 Response regulator receiver domain CTT30_18795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_18800 PF00155 Aminotransferase class I and II CTT30_18810 PF00654 Voltage gated chloride channel CTT30_18815 PF02492 CobW/HypB/UreG, nucleotide-binding domain CTT30_18815 PF07683 Cobalamin synthesis protein cobW C-terminal domain CTT30_18820 PF01926 50S ribosome-binding GTPase CTT30_18830 PF00990 Diguanylate cyclase, GGDEF domain CTT30_18835 PF00672 HAMP domain CTT30_18835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_18845 PF13404 AsnC-type helix-turn-helix domain CTT30_18845 PF01037 Lrp/AsnC ligand binding domain CTT30_18865 PF00107 Zinc-binding dehydrogenase CTT30_18865 PF08240 Alcohol dehydrogenase GroES-like domain CTT30_18870 PF02378 Phosphotransferase system, EIIC CTT30_18870 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CTT30_18875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CTT30_18880 PF02779 Transketolase, pyrimidine binding domain CTT30_18880 PF00456 Transketolase, thiamine diphosphate binding domain CTT30_18880 PF02780 Transketolase, C-terminal domain CTT30_18885 PF00923 Transaldolase/Fructose-6-phosphate aldolase CTT30_18895 PF03466 LysR substrate binding domain CTT30_18895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_18910 PF00581 Rhodanese-like domain CTT30_18915 PF00899 ThiF family CTT30_18920 PF03454 MoeA C-terminal region (domain IV) CTT30_18920 PF00994 Probable molybdopterin binding domain CTT30_18920 PF03453 MoeA N-terminal region (domain I and II) CTT30_18925 PF01227 GTP cyclohydrolase I CTT30_18930 PF03880 DbpA RNA binding domain CTT30_18930 PF00270 DEAD/DEAH box helicase CTT30_18930 PF00271 Helicase conserved C-terminal domain CTT30_18935 PF01625 Peptide methionine sulfoxide reductase CTT30_18935 PF01641 SelR domain CTT30_18965 PF13340 Putative transposase of IS4/5 family (DUF4096) CTT30_18970 PF01081 KDPG and KHG aldolase CTT30_18975 PF02142 MGS-like domain CTT30_18980 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CTT30_18985 PF00072 Response regulator receiver domain CTT30_18985 PF01627 Hpt domain CTT30_18985 PF00512 His Kinase A (phospho-acceptor) domain CTT30_18985 PF00672 HAMP domain CTT30_18985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_18995 PF00465 Iron-containing alcohol dehydrogenase CTT30_19000 PF06719 AraC-type transcriptional regulator N-terminus CTT30_19000 PF12833 Helix-turn-helix domain CTT30_19005 PF00483 Nucleotidyl transferase CTT30_19010 PF00990 Diguanylate cyclase, GGDEF domain CTT30_19015 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CTT30_19015 PF02378 Phosphotransferase system, EIIC CTT30_19020 PF00294 pfkB family carbohydrate kinase CTT30_19025 PF00381 PTS HPr component phosphorylation site CTT30_19025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CTT30_19030 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CTT30_19030 PF00356 Bacterial regulatory proteins, lacI family CTT30_19045 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CTT30_19045 PF07685 CobB/CobQ-like glutamine amidotransferase domain CTT30_19055 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_19060 PF00005 ABC transporter CTT30_19060 PF03459 TOBE domain CTT30_19070 PF00360 Phytochrome region CTT30_19070 PF00990 Diguanylate cyclase, GGDEF domain CTT30_19070 PF01590 GAF domain CTT30_19070 PF00563 EAL domain CTT30_19075 PF07694 5TMR of 5TMR-LYT CTT30_19075 PF00990 Diguanylate cyclase, GGDEF domain CTT30_19090 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CTT30_19090 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CTT30_19090 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CTT30_19095 PF02233 NAD(P) transhydrogenase beta subunit CTT30_19105 PF00072 Response regulator receiver domain CTT30_19105 PF00486 Transcriptional regulatory protein, C terminal CTT30_19120 PF03701 Uncharacterised protein family (UPF0181) CTT30_19140 PF02463 RecF/RecN/SMC N terminal domain CTT30_19180 PF01253 Translation initiation factor SUI1 CTT30_19195 PF01820 D-ala D-ala ligase N-terminus CTT30_19195 PF07478 D-ala D-ala ligase C-terminus CTT30_19200 PF05036 Sporulation related domain CTT30_19205 PF13380 CoA binding domain CTT30_19205 PF13607 Succinyl-CoA ligase like flavodoxin domain CTT30_19205 PF00583 Acetyltransferase (GNAT) family CTT30_19210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_19210 PF03466 LysR substrate binding domain CTT30_19215 PF07715 TonB-dependent Receptor Plug Domain CTT30_19215 PF00593 TonB dependent receptor CTT30_19220 PF12729 Four helix bundle sensory module for signal transduction CTT30_19220 PF00672 HAMP domain CTT30_19220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_19225 PF00676 Dehydrogenase E1 component CTT30_19230 PF02780 Transketolase, C-terminal domain CTT30_19230 PF02779 Transketolase, pyrimidine binding domain CTT30_19235 PF02817 e3 binding domain CTT30_19235 PF00364 Biotin-requiring enzyme CTT30_19235 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CTT30_19240 PF00990 Diguanylate cyclase, GGDEF domain CTT30_19245 PF00766 Electron transfer flavoprotein FAD-binding domain CTT30_19245 PF01012 Electron transfer flavoprotein domain CTT30_19250 PF01012 Electron transfer flavoprotein domain CTT30_19260 PF00127 Copper binding proteins, plastocyanin/azurin family CTT30_19270 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CTT30_19270 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CTT30_19275 PF00378 Enoyl-CoA hydratase/isomerase CTT30_19280 PF00378 Enoyl-CoA hydratase/isomerase CTT30_19285 PF02770 Acyl-CoA dehydrogenase, middle domain CTT30_19285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTT30_19285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTT30_19290 PF00171 Aldehyde dehydrogenase family CTT30_19295 PF02803 Thiolase, C-terminal domain CTT30_19295 PF00108 Thiolase, N-terminal domain CTT30_19300 PF09278 MerR, DNA binding CTT30_19300 PF00376 MerR family regulatory protein CTT30_19305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTT30_19305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTT30_19305 PF02770 Acyl-CoA dehydrogenase, middle domain CTT30_19310 PF01039 Carboxyl transferase domain CTT30_19315 PF00378 Enoyl-CoA hydratase/isomerase CTT30_19320 PF00682 HMGL-like CTT30_19340 PF01810 LysE type translocator CTT30_19350 PF07681 DoxX CTT30_19355 PF02678 Pirin CTT30_19355 PF17954 Quercetinase C-terminal cupin domain CTT30_19365 PF01235 Sodium:alanine symporter family CTT30_19370 PF03466 LysR substrate binding domain CTT30_19370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_19375 PF13460 NAD(P)H-binding CTT30_19385 PF18416 N-acetylglucosamine binding protein domain 2 CTT30_19385 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CTT30_19405 PF00529 HlyD membrane-fusion protein of T1SS CTT30_19410 PF00005 ABC transporter CTT30_19410 PF00664 ABC transporter transmembrane region CTT30_19415 PF00005 ABC transporter CTT30_19435 PF00871 Acetokinase family CTT30_19440 PF03707 Bacterial signalling protein N terminal repeat CTT30_19440 PF00990 Diguanylate cyclase, GGDEF domain CTT30_19440 PF00563 EAL domain CTT30_19445 PF13411 MerR HTH family regulatory protein CTT30_19455 PF07733 Bacterial DNA polymerase III alpha NTPase domain CTT30_19455 PF14579 Helix-hairpin-helix motif CTT30_19455 PF02811 PHP domain CTT30_19455 PF00929 Exonuclease CTT30_19455 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CTT30_19465 PF12793 Sugar transport-related sRNA regulator N-term CTT30_19465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CTT30_19475 PF03061 Thioesterase superfamily CTT30_19480 PF01435 Peptidase family M48 CTT30_19510 PF03741 Integral membrane protein TerC family CTT30_19515 PF02872 5'-nucleotidase, C-terminal domain CTT30_19515 PF00149 Calcineurin-like phosphoesterase CTT30_19520 PF11398 Protein of unknown function (DUF2813) CTT30_19525 PF06496 Protein of unknown function (DUF1097) CTT30_19530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_19530 PF03466 LysR substrate binding domain CTT30_19535 PF01226 Formate/nitrite transporter CTT30_19540 PF04264 YceI-like domain CTT30_19545 PF01292 Prokaryotic cytochrome b561 CTT30_19565 PF03606 C4-dicarboxylate anaerobic carrier CTT30_19570 PF00196 Bacterial regulatory proteins, luxR family CTT30_19570 PF00072 Response regulator receiver domain CTT30_19575 PF00672 HAMP domain CTT30_19575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_19575 PF07730 Histidine kinase CTT30_19575 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CTT30_19580 PF12838 4Fe-4S dicluster domain CTT30_19580 PF13187 4Fe-4S dicluster domain CTT30_19590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CTT30_19590 PF00384 Molybdopterin oxidoreductase CTT30_19590 PF01568 Molydopterin dinucleotide binding domain CTT30_19595 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CTT30_19600 PF03264 NapC/NirT cytochrome c family, N-terminal region CTT30_19610 PF16363 GDP-mannose 4,6 dehydratase CTT30_19615 PF03746 LamB/YcsF family CTT30_19625 PF02626 Carboxyltransferase domain, subdomain A and B CTT30_19640 PF00005 ABC transporter CTT30_19645 PF13472 GDSL-like Lipase/Acylhydrolase family CTT30_19650 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CTT30_19650 PF07055 Enoyl reductase FAD binding domain CTT30_19650 PF12241 Trans-2-enoyl-CoA reductase catalytic region CTT30_19655 PF00563 EAL domain CTT30_19655 PF00498 FHA domain CTT30_19655 PF00990 Diguanylate cyclase, GGDEF domain CTT30_19665 PF00226 DnaJ domain CTT30_19665 PF01556 DnaJ C terminal domain CTT30_19665 PF00684 DnaJ central domain CTT30_19680 PF03091 CutA1 divalent ion tolerance protein CTT30_19685 PF13361 UvrD-like helicase C-terminal domain CTT30_19685 PF00580 UvrD/REP helicase N-terminal domain CTT30_19685 PF12462 DNA helicase IV / RNA helicase N terminal CTT30_19690 PF12805 FUSC-like inner membrane protein yccS CTT30_19705 PF01266 FAD dependent oxidoreductase CTT30_19705 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CTT30_19715 PF00072 Response regulator receiver domain CTT30_19715 PF09308 LuxQ, periplasmic CTT30_19715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_19715 PF00512 His Kinase A (phospho-acceptor) domain CTT30_19720 PF13407 Periplasmic binding protein domain CTT30_19730 PF01541 GIY-YIG catalytic domain CTT30_19735 PF04337 Protein of unknown function, DUF480 CTT30_19745 PF04363 Protein of unknown function (DUF496) CTT30_19755 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CTT30_19755 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CTT30_19760 PF00230 Major intrinsic protein CTT30_19765 PF01266 FAD dependent oxidoreductase CTT30_19765 PF04324 BFD-like [2Fe-2S] binding domain CTT30_19770 PF00890 FAD binding domain CTT30_19775 PF02754 Cysteine-rich domain CTT30_19775 PF13183 4Fe-4S dicluster domain CTT30_19795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTT30_19795 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CTT30_19805 PF08443 RimK-like ATP-grasp domain CTT30_19805 PF18030 RimK PreATP-grasp domain CTT30_19810 PF00155 Aminotransferase class I and II CTT30_19820 PF03477 ATP cone domain CTT30_19820 PF13597 Anaerobic ribonucleoside-triphosphate reductase CTT30_19830 PF04143 Sulphur transport CTT30_19850 PF05547 Immune inhibitor A peptidase M6 CTT30_19850 PF00801 PKD domain CTT30_19855 PF00657 GDSL-like Lipase/Acylhydrolase CTT30_19860 PF07690 Major Facilitator Superfamily CTT30_19865 PF01177 Asp/Glu/Hydantoin racemase CTT30_19870 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CTT30_19870 PF00561 alpha/beta hydrolase fold CTT30_19880 PF02803 Thiolase, C-terminal domain CTT30_19880 PF00108 Thiolase, N-terminal domain CTT30_19885 PF00106 short chain dehydrogenase CTT30_19890 PF00440 Bacterial regulatory proteins, tetR family CTT30_19890 PF08361 MAATS-type transcriptional repressor, C-terminal region CTT30_19900 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE CTT30_19930 PF01037 Lrp/AsnC ligand binding domain CTT30_19940 PF05947 Type VI secretion system, TssF CTT30_19950 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CTT30_19965 PF00069 Protein kinase domain CTT30_19965 PF03793 PASTA domain CTT30_19990 PF04717 Type VI secretion system, phage-baseplate injector CTT30_19995 PF05638 Type VI secretion system effector, Hcp CTT30_20000 PF07724 AAA domain (Cdc48 subfamily) CTT30_20000 PF00004 ATPase family associated with various cellular activities (AAA) CTT30_20000 PF17871 AAA lid domain CTT30_20000 PF10431 C-terminal, D2-small domain, of ClpB protein CTT30_20005 PF00158 Sigma-54 interaction domain CTT30_20005 PF02954 Bacterial regulatory protein, Fis family CTT30_20005 PF01590 GAF domain CTT30_20010 PF05736 OprF membrane domain CTT30_20010 PF00691 OmpA family CTT30_20030 PF01551 Peptidase family M23 CTT30_20030 PF08525 Opacity-associated protein A N-terminal motif CTT30_20030 PF01476 LysM domain CTT30_20040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_20040 PF00672 HAMP domain CTT30_20040 PF17200 Single Cache domain 2 CTT30_20050 PF08774 VRR-NUC domain CTT30_20050 PF18081 Fanconi anemia-associated nuclease SAP domain CTT30_20065 PF01268 Formate--tetrahydrofolate ligase CTT30_20085 PF00563 EAL domain CTT30_20085 PF03707 Bacterial signalling protein N terminal repeat CTT30_20085 PF00990 Diguanylate cyclase, GGDEF domain CTT30_20090 PF00072 Response regulator receiver domain CTT30_20090 PF00990 Diguanylate cyclase, GGDEF domain CTT30_20095 PF00005 ABC transporter CTT30_20095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTT30_20100 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_20100 PF12911 N-terminal TM domain of oligopeptide transport permease C CTT30_20105 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_20110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CTT30_20120 PF00672 HAMP domain CTT30_20120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_20120 PF17200 Single Cache domain 2 CTT30_20125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CTT30_20125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CTT30_20130 PF05362 Lon protease (S16) C-terminal proteolytic domain CTT30_20130 PF13654 AAA domain CTT30_20140 PF00005 ABC transporter CTT30_20140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTT30_20145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_20145 PF03466 LysR substrate binding domain CTT30_20150 PF02652 L-lactate permease CTT30_20155 PF01070 FMN-dependent dehydrogenase CTT30_20170 PF00571 CBS domain CTT30_20170 PF00005 ABC transporter CTT30_20175 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_20180 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CTT30_20185 PF05199 GMC oxidoreductase CTT30_20185 PF00732 GMC oxidoreductase CTT30_20190 PF00171 Aldehyde dehydrogenase family CTT30_20195 PF13977 BetI-type transcriptional repressor, C-terminal CTT30_20195 PF00440 Bacterial regulatory proteins, tetR family CTT30_20205 PF02627 Carboxymuconolactone decarboxylase family CTT30_20210 PF02525 Flavodoxin-like fold CTT30_20215 PF00155 Aminotransferase class I and II CTT30_20215 PF00392 Bacterial regulatory proteins, gntR family CTT30_20225 PF00563 EAL domain CTT30_20225 PF12792 CSS motif domain associated with EAL CTT30_20230 PF12852 Cupin CTT30_20230 PF12833 Helix-turn-helix domain CTT30_20235 PF07690 Major Facilitator Superfamily CTT30_20240 PF03466 LysR substrate binding domain CTT30_20240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_20245 PF04794 YdjC-like protein CTT30_20250 PF03473 MOSC domain CTT30_20250 PF00111 2Fe-2S iron-sulfur cluster binding domain CTT30_20250 PF03476 MOSC N-terminal beta barrel domain CTT30_20255 PF00512 His Kinase A (phospho-acceptor) domain CTT30_20255 PF01627 Hpt domain CTT30_20255 PF00989 PAS fold CTT30_20255 PF00072 Response regulator receiver domain CTT30_20255 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTT30_20255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_20265 PF07859 alpha/beta hydrolase fold CTT30_20265 PF00934 PE family CTT30_20275 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CTT30_20275 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CTT30_20275 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CTT30_20280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CTT30_20285 PF00132 Bacterial transferase hexapeptide (six repeats) CTT30_20290 PF00144 Beta-lactamase CTT30_20305 PF00196 Bacterial regulatory proteins, luxR family CTT30_20305 PF00072 Response regulator receiver domain CTT30_20325 PF00478 IMP dehydrogenase / GMP reductase domain CTT30_20330 PF01256 Carbohydrate kinase CTT30_20330 PF03853 YjeF-related protein N-terminus CTT30_20345 PF00072 Response regulator receiver domain CTT30_20350 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CTT30_20350 PF00072 Response regulator receiver domain CTT30_20350 PF00512 His Kinase A (phospho-acceptor) domain CTT30_20350 PF01627 Hpt domain CTT30_20350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_20350 PF00672 HAMP domain CTT30_20360 PF13581 Histidine kinase-like ATPase domain CTT30_20370 PF08678 Rsbr N terminal CTT30_20370 PF01740 STAS domain CTT30_20375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_20375 PF08447 PAS fold CTT30_20395 PF00575 S1 RNA binding domain CTT30_20395 PF00773 RNB domain CTT30_20395 PF08206 Ribonuclease B OB domain CTT30_20400 PF00270 DEAD/DEAH box helicase CTT30_20400 PF00271 Helicase conserved C-terminal domain CTT30_20400 PF03880 DbpA RNA binding domain CTT30_20410 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTT30_20410 PF00512 His Kinase A (phospho-acceptor) domain CTT30_20410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_20415 PF11849 Domain of unknown function (DUF3369) CTT30_20420 PF00356 Bacterial regulatory proteins, lacI family CTT30_20425 PF00294 pfkB family carbohydrate kinase CTT30_20430 PF13407 Periplasmic binding protein domain CTT30_20435 PF02653 Branched-chain amino acid transport system / permease component CTT30_20440 PF00005 ABC transporter CTT30_20445 PF05025 RbsD / FucU transport protein family CTT30_20460 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CTT30_20460 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CTT30_20460 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CTT30_20465 PF00909 Ammonium Transporter Family CTT30_20490 PF00155 Aminotransferase class I and II CTT30_20490 PF00392 Bacterial regulatory proteins, gntR family CTT30_20525 PF01447 Thermolysin metallopeptidase, catalytic domain CTT30_20525 PF02868 Thermolysin metallopeptidase, alpha-helical domain CTT30_20525 PF04151 Bacterial pre-peptidase C-terminal domain CTT30_20525 PF07504 Fungalysin/Thermolysin Propeptide Motif CTT30_20525 PF03413 Peptidase propeptide and YPEB domain CTT30_20540 PF00356 Bacterial regulatory proteins, lacI family CTT30_20540 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CTT30_20545 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CTT30_20545 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CTT30_20550 PF01202 Shikimate kinase CTT30_20555 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CTT30_20555 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CTT30_20565 PF03480 Bacterial extracellular solute-binding protein, family 7 CTT30_20575 PF03707 Bacterial signalling protein N terminal repeat CTT30_20575 PF00563 EAL domain CTT30_20575 PF00990 Diguanylate cyclase, GGDEF domain CTT30_20590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_20590 PF03466 LysR substrate binding domain CTT30_20595 PF00563 EAL domain CTT30_20595 PF00990 Diguanylate cyclase, GGDEF domain CTT30_20605 PF06865 Pyrimidine/purine nucleoside phosphorylase CTT30_20615 PF00924 Mechanosensitive ion channel CTT30_20625 PF12706 Beta-lactamase superfamily domain CTT30_20635 PF02397 Bacterial sugar transferase CTT30_20645 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CTT30_20645 PF10531 SLBB domain CTT30_20645 PF02563 Polysaccharide biosynthesis/export protein CTT30_20650 PF13807 G-rich domain on putative tyrosine kinase CTT30_20650 PF02706 Chain length determinant protein CTT30_20650 PF13614 AAA domain CTT30_20675 PF00578 AhpC/TSA family CTT30_20680 PF11412 Disulphide bond corrector protein DsbC CTT30_20680 PF02683 Cytochrome C biogenesis protein transmembrane region CTT30_20690 PF00583 Acetyltransferase (GNAT) family CTT30_20695 PF01810 LysE type translocator CTT30_20725 PF00012 Hsp70 protein CTT30_20730 PF03466 LysR substrate binding domain CTT30_20730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_20740 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CTT30_20740 PF13378 Enolase C-terminal domain-like CTT30_20750 PF00990 Diguanylate cyclase, GGDEF domain CTT30_20750 PF00563 EAL domain CTT30_20755 PF13458 Periplasmic binding protein CTT30_20760 PF17151 Periplasmic sensor domain CTT30_20760 PF00990 Diguanylate cyclase, GGDEF domain CTT30_20770 PF04389 Peptidase family M28 CTT30_20770 PF02225 PA domain CTT30_20775 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CTT30_20775 PF17999 Pullulanase N1-terminal domain CTT30_20775 PF00128 Alpha amylase, catalytic domain CTT30_20790 PF01810 LysE type translocator CTT30_20795 PF00072 Response regulator receiver domain CTT30_20795 PF04397 LytTr DNA-binding domain CTT30_20800 PF07694 5TMR of 5TMR-LYT CTT30_20800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_20800 PF06580 Histidine kinase CTT30_20815 PF02687 FtsX-like permease family CTT30_20815 PF12704 MacB-like periplasmic core domain CTT30_20820 PF00005 ABC transporter CTT30_20835 PF00171 Aldehyde dehydrogenase family CTT30_20845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_20845 PF03466 LysR substrate binding domain CTT30_20850 PF00990 Diguanylate cyclase, GGDEF domain CTT30_20850 PF17151 Periplasmic sensor domain CTT30_20855 PF02525 Flavodoxin-like fold CTT30_20865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_20865 PF03466 LysR substrate binding domain CTT30_20875 PF12843 Putative quorum-sensing-regulated virulence factor CTT30_20890 PF07943 Penicillin-binding protein 5, C-terminal domain CTT30_20890 PF00768 D-alanyl-D-alanine carboxypeptidase CTT30_20905 PF03889 Alternative ribosome-rescue factor A CTT30_20910 PF00313 'Cold-shock' DNA-binding domain CTT30_20925 PF00970 Oxidoreductase FAD-binding domain CTT30_20925 PF00175 Oxidoreductase NAD-binding domain CTT30_20925 PF00042 Globin CTT30_20930 PF01590 GAF domain CTT30_20930 PF00158 Sigma-54 interaction domain CTT30_20945 PF02525 Flavodoxin-like fold CTT30_20950 PF00999 Sodium/hydrogen exchanger family CTT30_20950 PF02254 TrkA-N domain CTT30_20955 PF01554 MatE CTT30_20960 PF00892 EamA-like transporter family CTT30_20965 PF00462 Glutaredoxin CTT30_20980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_20980 PF03466 LysR substrate binding domain CTT30_20985 PF00563 EAL domain CTT30_20985 PF00990 Diguanylate cyclase, GGDEF domain CTT30_20985 PF08447 PAS fold CTT30_20985 PF08448 PAS fold CTT30_21000 PF02540 NAD synthase CTT30_21005 PF00196 Bacterial regulatory proteins, luxR family CTT30_21020 PF08669 Glycine cleavage T-protein C-terminal barrel domain CTT30_21020 PF01571 Aminomethyltransferase folate-binding domain CTT30_21030 PF00464 Serine hydroxymethyltransferase CTT30_21035 PF01597 Glycine cleavage H-protein CTT30_21040 PF02347 Glycine cleavage system P-protein CTT30_21070 PF00005 ABC transporter CTT30_21070 PF00664 ABC transporter transmembrane region CTT30_21075 PF00582 Universal stress protein family CTT30_21085 PF00361 Proton-conducting membrane transporter CTT30_21085 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CTT30_21085 PF13244 Domain of unknown function (DUF4040) CTT30_21085 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CTT30_21090 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CTT30_21095 PF00361 Proton-conducting membrane transporter CTT30_21100 PF01899 Na+/H+ ion antiporter subunit CTT30_21105 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CTT30_21110 PF03334 Na+/H+ antiporter subunit CTT30_21135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CTT30_21135 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CTT30_21140 PF01810 LysE type translocator CTT30_21150 PF05995 Cysteine dioxygenase type I CTT30_21155 PF00672 HAMP domain CTT30_21155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_21155 PF12729 Four helix bundle sensory module for signal transduction CTT30_21160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_21160 PF00672 HAMP domain CTT30_21160 PF17200 Single Cache domain 2 CTT30_21170 PF02264 LamB porin CTT30_21175 PF00128 Alpha amylase, catalytic domain CTT30_21175 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CTT30_21185 PF17945 Beta/Gamma crystallin CTT30_21185 PF12561 ToxR activated gene A lipoprotein domain CTT30_21200 PF03808 Glycosyl transferase WecB/TagA/CpsF family CTT30_21210 PF13579 Glycosyl transferase 4-like domain CTT30_21210 PF00534 Glycosyl transferases group 1 CTT30_21220 PF00132 Bacterial transferase hexapeptide (six repeats) CTT30_21235 PF13439 Glycosyltransferase Family 4 CTT30_21235 PF00534 Glycosyl transferases group 1 CTT30_21240 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CTT30_21240 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CTT30_21240 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CTT30_21245 PF02350 UDP-N-acetylglucosamine 2-epimerase CTT30_21250 PF01451 Low molecular weight phosphotyrosine protein phosphatase CTT30_21255 PF03605 Anaerobic c4-dicarboxylate membrane transporter CTT30_21265 PF00248 Aldo/keto reductase family CTT30_21275 PF00128 Alpha amylase, catalytic domain CTT30_21285 PF00793 DAHP synthetase I family CTT30_21290 PF00005 ABC transporter CTT30_21295 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_21300 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTT30_21305 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_21310 PF01040 UbiA prenyltransferase family CTT30_21315 PF02628 Cytochrome oxidase assembly protein CTT30_21335 PF00510 Cytochrome c oxidase subunit III CTT30_21340 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CTT30_21345 PF00115 Cytochrome C and Quinol oxidase polypeptide I CTT30_21350 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CTT30_21350 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CTT30_21355 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CTT30_21355 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CTT30_21355 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CTT30_21355 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CTT30_21360 PF00892 EamA-like transporter family CTT30_21370 PF03618 Kinase/pyrophosphorylase CTT30_21375 PF00391 PEP-utilising enzyme, mobile domain CTT30_21375 PF02896 PEP-utilising enzyme, TIM barrel domain CTT30_21375 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CTT30_21380 PF07670 Nucleoside recognition CTT30_21390 PF00175 Oxidoreductase NAD-binding domain CTT30_21390 PF00970 Oxidoreductase FAD-binding domain CTT30_21415 PF00873 AcrB/AcrD/AcrF family CTT30_21430 PF05726 Pirin C-terminal cupin domain CTT30_21430 PF02678 Pirin CTT30_21435 PF00561 alpha/beta hydrolase fold CTT30_21475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_21475 PF00672 HAMP domain CTT30_21475 PF00512 His Kinase A (phospho-acceptor) domain CTT30_21480 PF00072 Response regulator receiver domain CTT30_21480 PF00486 Transcriptional regulatory protein, C terminal CTT30_21485 PF00472 RF-1 domain CTT30_21505 PF01979 Amidohydrolase family CTT30_21510 PF00132 Bacterial transferase hexapeptide (six repeats) CTT30_21515 PF02492 CobW/HypB/UreG, nucleotide-binding domain CTT30_21515 PF07683 Cobalamin synthesis protein cobW C-terminal domain CTT30_21520 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CTT30_21530 PF00701 Dihydrodipicolinate synthetase family CTT30_21535 PF02423 Ornithine cyclodeaminase/mu-crystallin family CTT30_21540 PF01266 FAD dependent oxidoreductase CTT30_21545 PF05544 Proline racemase CTT30_21550 PF00171 Aldehyde dehydrogenase family CTT30_21555 PF00392 Bacterial regulatory proteins, gntR family CTT30_21555 PF07729 FCD domain CTT30_21565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CTT30_21570 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_21575 PF12911 N-terminal TM domain of oligopeptide transport permease C CTT30_21575 PF00528 Binding-protein-dependent transport system inner membrane component CTT30_21580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTT30_21580 PF00005 ABC transporter CTT30_21585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTT30_21585 PF00005 ABC transporter CTT30_21590 PF05195 Aminopeptidase P, N-terminal domain CTT30_21590 PF00557 Metallopeptidase family M24 CTT30_21610 PF08453 Peptidase family M9 N-terminal CTT30_21610 PF04151 Bacterial pre-peptidase C-terminal domain CTT30_21610 PF01752 Collagenase CTT30_21620 PF03372 Endonuclease/Exonuclease/phosphatase family CTT30_21625 PF13006 Insertion element 4 transposase N-terminal CTT30_21625 PF01609 Transposase DDE domain CTT30_21630 PF01752 Collagenase CTT30_21630 PF08453 Peptidase family M9 N-terminal CTT30_21635 PF00270 DEAD/DEAH box helicase CTT30_21635 PF00271 Helicase conserved C-terminal domain CTT30_21645 PF03734 L,D-transpeptidase catalytic domain CTT30_21645 PF17969 L,D-transpeptidase C-terminal domain CTT30_21645 PF01476 LysM domain CTT30_21650 PF00875 DNA photolyase CTT30_21650 PF03441 FAD binding domain of DNA photolyase CTT30_21655 PF13411 MerR HTH family regulatory protein CTT30_21660 PF08349 Protein of unknown function (DUF1722) CTT30_21665 PF01048 Phosphorylase superfamily CTT30_21680 PF00990 Diguanylate cyclase, GGDEF domain CTT30_21690 PF11742 Protein of unknown function (DUF3302) CTT30_21695 PF00529 HlyD membrane-fusion protein of T1SS CTT30_21695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTT30_21700 PF03616 Sodium/glutamate symporter CTT30_21715 PF00664 ABC transporter transmembrane region CTT30_21715 PF00005 ABC transporter CTT30_21725 PF01037 Lrp/AsnC ligand binding domain CTT30_21735 PF01609 Transposase DDE domain CTT30_21735 PF13006 Insertion element 4 transposase N-terminal CTT30_21740 PF00474 Sodium:solute symporter family CTT30_21750 PF01619 Proline dehydrogenase CTT30_21750 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CTT30_21750 PF14850 DNA-binding domain of Proline dehydrogenase CTT30_21750 PF00171 Aldehyde dehydrogenase family CTT30_21755 PF12833 Helix-turn-helix domain CTT30_21765 PF03781 Sulfatase-modifying factor enzyme 1 CTT30_21775 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CTT30_21775 PF01243 Pyridoxamine 5'-phosphate oxidase CTT30_21780 PF00529 HlyD membrane-fusion protein of T1SS CTT30_21795 PF00664 ABC transporter transmembrane region CTT30_21795 PF00005 ABC transporter CTT30_21795 PF03412 Peptidase C39 family CTT30_21800 PF08329 Chitinase A, N-terminal domain CTT30_21800 PF00704 Glycosyl hydrolases family 18 CTT30_21805 PF01212 Beta-eliminating lyase CTT30_21810 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CTT30_21815 PF01966 HD domain CTT30_21820 PF13302 Acetyltransferase (GNAT) domain CTT30_21830 PF02630 SCO1/SenC CTT30_21840 PF03466 LysR substrate binding domain CTT30_21840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_21845 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CTT30_21850 PF01906 Putative heavy-metal-binding CTT30_21855 PF03466 LysR substrate binding domain CTT30_21855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_21860 PF07690 Major Facilitator Superfamily CTT30_21865 PF00455 DeoR C terminal sensor domain CTT30_21865 PF08220 DeoR-like helix-turn-helix domain CTT30_21870 PF03009 Glycerophosphoryl diester phosphodiesterase family CTT30_21875 PF03480 Bacterial extracellular solute-binding protein, family 7 CTT30_21885 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CTT30_21910 PF03306 Alpha-acetolactate decarboxylase CTT30_21915 PF07690 Major Facilitator Superfamily CTT30_21920 PF00205 Thiamine pyrophosphate enzyme, central domain CTT30_21920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CTT30_21920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CTT30_22070 PF13185 GAF domain CTT30_22070 PF02954 Bacterial regulatory protein, Fis family CTT30_22070 PF00158 Sigma-54 interaction domain CTT30_22075 PF00375 Sodium:dicarboxylate symporter family CTT30_22080 PF02743 Cache domain CTT30_22080 PF00672 HAMP domain CTT30_22080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_22090 PF04115 Ureidoglycolate lyase CTT30_22095 PF03561 Allantoicase repeat CTT30_22100 PF01014 Uricase CTT30_22100 PF09349 OHCU decarboxylase CTT30_22110 PF00576 HIUase/Transthyretin family CTT30_22115 PF00860 Permease family CTT30_22120 PF00860 Permease family CTT30_22125 PF01979 Amidohydrolase family CTT30_22130 PF06224 Winged helix DNA-binding domain CTT30_22135 PF03928 Haem-degrading CTT30_22140 PF00486 Transcriptional regulatory protein, C terminal CTT30_22140 PF00072 Response regulator receiver domain CTT30_22145 PF07689 KaiB domain CTT30_22145 PF00512 His Kinase A (phospho-acceptor) domain CTT30_22145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTT30_22150 PF00753 Metallo-beta-lactamase superfamily CTT30_22200 PF01040 UbiA prenyltransferase family CTT30_22210 PF00510 Cytochrome c oxidase subunit III CTT30_22215 PF00115 Cytochrome C and Quinol oxidase polypeptide I CTT30_22220 PF06481 COX Aromatic Rich Motif CTT30_22220 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CTT30_22225 PF10282 Lactonase, 7-bladed beta-propeller CTT30_22245 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTT30_22250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTT30_22250 PF00672 HAMP domain CTT30_22250 PF02743 Cache domain CTT30_22255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTT30_22265 PF00118 TCP-1/cpn60 chaperonin family CTT30_22270 PF00166 Chaperonin 10 Kd subunit CTT30_22275 PF00011 Hsp20/alpha crystallin family CTT30_22280 PF01594 AI-2E family transporter CTT30_22315 PF00924 Mechanosensitive ion channel CTT30_22320 PF02142 MGS-like domain CTT30_22320 PF00781 Diacylglycerol kinase catalytic domain CTT30_22345 PF00158 Sigma-54 interaction domain CTT30_22345 PF02954 Bacterial regulatory protein, Fis family CTT30_22345 PF01590 GAF domain CTT30_22350 PF00990 Diguanylate cyclase, GGDEF domain CTT30_22350 PF00563 EAL domain CTT30_22350 PF08448 PAS fold CTT30_22355 PF13581 Histidine kinase-like ATPase domain CTT30_22370 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CTT30_22370 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CTT30_22375 PF01261 Xylose isomerase-like TIM barrel CTT30_22380 PF00205 Thiamine pyrophosphate enzyme, central domain CTT30_22380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CTT30_22380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CTT30_22385 PF01274 Malate synthase CTT30_22395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTT30_22395 PF03466 LysR substrate binding domain CTT30_22400 PF03606 C4-dicarboxylate anaerobic carrier CTT30_22405 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CTT30_22405 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CTT30_22410 PF01047 MarR family CTT30_22415 PF00892 EamA-like transporter family CTT30_22435 PF03610 PTS system fructose IIA component CTT30_22435 PF03830 PTS system sorbose subfamily IIB component CTT30_22440 PF01709 Transcriptional regulator CTT30_22480 PF05872 Bacterial protein of unknown function (DUF853) CTT30_22490 PF01131 DNA topoisomerase CTT30_22490 PF01751 Toprim domain CTT30_22490 PF13342 C-terminal repeat of topoisomerase CTT30_22490 PF01396 Topoisomerase DNA binding C4 zinc finger CTT30_22495 PF13361 UvrD-like helicase C-terminal domain CTT30_22495 PF00580 UvrD/REP helicase N-terminal domain CTT30_22605 PF13614 AAA domain CTT30_22725 PF00563 EAL domain CTT30_22725 PF12792 CSS motif domain associated with EAL CTT30_22750 PF00816 H-NS histone family CTT30_22765 PF04994 TfoX C-terminal domain CTT30_22765 PF04993 TfoX N-terminal domain CTT30_22855 PF16925 Tetracyclin repressor-like, C-terminal domain CTT30_22855 PF00440 Bacterial regulatory proteins, tetR family CTT30_22860 PF00884 Sulfatase CTT30_22865 PF13737 Transposase DDE domain CTT30_22875 PF13737 Transposase DDE domain CTT30_23220 PF17762 HTH domain found in ParB protein CTT30_23220 PF02195 ParB-like nuclease domain CTT30_23260 PF10411 Disulfide bond isomerase protein N-terminus CTT30_23260 PF13098 Thioredoxin-like domain CTT30_23265 PF01396 Topoisomerase DNA binding C4 zinc finger CTT30_23265 PF08272 Topoisomerase I zinc-ribbon-like CTT30_23265 PF01131 DNA topoisomerase CTT30_23265 PF01751 Toprim domain CTT30_23330 PF00437 Type II/IV secretion system protein CTT30_23355 PF00437 Type II/IV secretion system protein