locus-tag class description ISX50_00015 PF13488 Glycine zipper ISX50_00015 PF00691 OmpA family ISX50_00025 PF17151 Periplasmic sensor domain ISX50_00025 PF00990 Diguanylate cyclase, GGDEF domain ISX50_00030 PF06508 Queuosine biosynthesis protein QueC ISX50_00035 PF04055 Radical SAM superfamily ISX50_00065 PF13193 AMP-binding enzyme C-terminal domain ISX50_00065 PF00501 AMP-binding enzyme ISX50_00065 PF16177 Acetyl-coenzyme A synthetase N-terminus ISX50_00070 PF04303 PrpF protein ISX50_00075 PF00330 Aconitase family (aconitate hydratase) ISX50_00075 PF00694 Aconitase C-terminal domain ISX50_00080 PF00285 Citrate synthase, C-terminal domain ISX50_00110 PF01970 Tripartite tricarboxylate transporter TctA family ISX50_00125 PF09905 DNA-binding protein VF530 ISX50_00130 PF00072 Response regulator receiver domain ISX50_00135 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ISX50_00135 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ISX50_00140 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ISX50_00145 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ISX50_00145 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ISX50_00150 PF00072 Response regulator receiver domain ISX50_00150 PF12431 Transcriptional regulator ISX50_00155 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ISX50_00155 PF17203 Single cache domain 3 ISX50_00155 PF00989 PAS fold ISX50_00155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_00170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISX50_00185 PF01235 Sodium:alanine symporter family ISX50_00205 PF01235 Sodium:alanine symporter family ISX50_00210 PF01810 LysE type translocator ISX50_00215 PF02074 Carboxypeptidase Taq (M32) metallopeptidase ISX50_00230 PF01925 Sulfite exporter TauE/SafE ISX50_00240 PF01717 Cobalamin-independent synthase, Catalytic domain ISX50_00240 PF08267 Cobalamin-independent synthase, N-terminal domain ISX50_00245 PF13673 Acetyltransferase (GNAT) domain ISX50_00250 PF00583 Acetyltransferase (GNAT) family ISX50_00255 PF12833 Helix-turn-helix domain ISX50_00255 PF01965 DJ-1/PfpI family ISX50_00275 PF00158 Sigma-54 interaction domain ISX50_00275 PF02954 Bacterial regulatory protein, Fis family ISX50_00275 PF00072 Response regulator receiver domain ISX50_00280 PF00989 PAS fold ISX50_00280 PF00512 His Kinase A (phospho-acceptor) domain ISX50_00280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_00285 PF00939 Sodium:sulfate symporter transmembrane region ISX50_00315 PF02868 Thermolysin metallopeptidase, alpha-helical domain ISX50_00315 PF07504 Fungalysin/Thermolysin Propeptide Motif ISX50_00315 PF03413 Peptidase propeptide and YPEB domain ISX50_00315 PF01447 Thermolysin metallopeptidase, catalytic domain ISX50_00315 PF04151 Bacterial pre-peptidase C-terminal domain ISX50_00335 PF03466 LysR substrate binding domain ISX50_00335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_00340 PF01212 Beta-eliminating lyase ISX50_00355 PF01625 Peptide methionine sulfoxide reductase ISX50_00355 PF01641 SelR domain ISX50_00365 PF00474 Sodium:solute symporter family ISX50_00375 PF12729 Four helix bundle sensory module for signal transduction ISX50_00375 PF00672 HAMP domain ISX50_00375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_00385 PF00929 Exonuclease ISX50_00385 PF02811 PHP domain ISX50_00385 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ISX50_00385 PF11490 DNA polymerase III polC-type N-terminus II ISX50_00385 PF07733 Bacterial DNA polymerase III alpha NTPase domain ISX50_00385 PF14579 Helix-hairpin-helix motif ISX50_00390 PF00571 CBS domain ISX50_00395 PF00392 Bacterial regulatory proteins, gntR family ISX50_00395 PF07729 FCD domain ISX50_00405 PF07729 FCD domain ISX50_00405 PF00392 Bacterial regulatory proteins, gntR family ISX50_00415 PF08787 Alginate lyase ISX50_00430 PF08787 Alginate lyase ISX50_00435 PF08787 Alginate lyase ISX50_00440 PF02743 Cache domain ISX50_00440 PF00672 HAMP domain ISX50_00440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_00445 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ISX50_00445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ISX50_00455 PF00474 Sodium:solute symporter family ISX50_00465 PF03401 Tripartite tricarboxylate transporter family receptor ISX50_00475 PF01970 Tripartite tricarboxylate transporter TctA family ISX50_00480 PF00392 Bacterial regulatory proteins, gntR family ISX50_00480 PF07729 FCD domain ISX50_00490 PF00005 ABC transporter ISX50_00495 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_00500 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_00505 PF01557 Fumarylacetoacetate (FAA) hydrolase family ISX50_00510 PF05426 Alginate lyase ISX50_00510 PF07940 Heparinase II/III-like protein ISX50_00515 PF05426 Alginate lyase ISX50_00515 PF07940 Heparinase II/III-like protein ISX50_00520 PF07883 Cupin domain ISX50_00525 PF00294 pfkB family carbohydrate kinase ISX50_00530 PF01081 KDPG and KHG aldolase ISX50_00535 PF00474 Sodium:solute symporter family ISX50_00540 PF01464 Transglycosylase SLT domain ISX50_00540 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISX50_00550 PF00491 Arginase family ISX50_00555 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ISX50_00555 PF17810 Arginine decarboxylase helical bundle domain ISX50_00555 PF17944 Arginine decarboxylase C-terminal helical extension ISX50_00560 PF00171 Aldehyde dehydrogenase family ISX50_00565 PF00440 Bacterial regulatory proteins, tetR family ISX50_00565 PF17932 Tetracyclin repressor-like, C-terminal domain ISX50_00570 PF12848 ABC transporter ISX50_00570 PF16326 ABC transporter C-terminal domain ISX50_00570 PF00005 ABC transporter ISX50_00585 PF04266 ASCH domain ISX50_00590 PF00453 Ribosomal protein L20 ISX50_00595 PF01632 Ribosomal protein L35 ISX50_00600 PF00707 Translation initiation factor IF-3, C-terminal domain ISX50_00600 PF05198 Translation initiation factor IF-3, N-terminal domain ISX50_00605 PF03129 Anticodon binding domain ISX50_00605 PF02824 TGS domain ISX50_00605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ISX50_00605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ISX50_00615 PF07070 SpoOM protein ISX50_00620 PF00392 Bacterial regulatory proteins, gntR family ISX50_00620 PF07702 UTRA domain ISX50_00625 PF01979 Amidohydrolase family ISX50_00630 PF00491 Arginase family ISX50_00635 PF01175 Urocanase Rossmann-like domain ISX50_00635 PF17392 Urocanase C-terminal domain ISX50_00635 PF17391 Urocanase N-terminal domain ISX50_00640 PF00221 Aromatic amino acid lyase ISX50_00650 PF04191 Phospholipid methyltransferase ISX50_00655 PF02913 FAD linked oxidases, C-terminal domain ISX50_00655 PF01565 FAD binding domain ISX50_00655 PF13183 4Fe-4S dicluster domain ISX50_00670 PF00691 OmpA family ISX50_00690 PF01259 SAICAR synthetase ISX50_00695 PF01609 Transposase DDE domain ISX50_00695 PF13006 Insertion element 4 transposase N-terminal ISX50_00705 PF04408 Helicase associated domain (HA2) ISX50_00705 PF00270 DEAD/DEAH box helicase ISX50_00705 PF00271 Helicase conserved C-terminal domain ISX50_00705 PF08482 ATP-dependent helicase C-terminal ISX50_00710 PF00390 Malic enzyme, N-terminal domain ISX50_00710 PF03949 Malic enzyme, NAD binding domain ISX50_00715 PF02698 DUF218 domain ISX50_00720 PF00939 Sodium:sulfate symporter transmembrane region ISX50_00725 PF00990 Diguanylate cyclase, GGDEF domain ISX50_00725 PF00072 Response regulator receiver domain ISX50_00735 PF00990 Diguanylate cyclase, GGDEF domain ISX50_00735 PF08448 PAS fold ISX50_00740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_00740 PF03466 LysR substrate binding domain ISX50_00750 PF00266 Aminotransferase class-V ISX50_00765 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_00770 PF00664 ABC transporter transmembrane region ISX50_00770 PF00005 ABC transporter ISX50_00775 PF00664 ABC transporter transmembrane region ISX50_00775 PF00005 ABC transporter ISX50_00780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_00780 PF00672 HAMP domain ISX50_00785 PF02028 BCCT, betaine/carnitine/choline family transporter ISX50_00790 PF02028 BCCT, betaine/carnitine/choline family transporter ISX50_00795 PF00196 Bacterial regulatory proteins, luxR family ISX50_00795 PF00072 Response regulator receiver domain ISX50_00800 PF17200 Single Cache domain 2 ISX50_00800 PF07730 Histidine kinase ISX50_00805 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ISX50_00815 PF03480 Bacterial extracellular solute-binding protein, family 7 ISX50_00830 PF00753 Metallo-beta-lactamase superfamily ISX50_00835 PF05951 Bacterial protein of unknown function (DUF882) ISX50_00840 PF01471 Putative peptidoglycan binding domain ISX50_00840 PF03734 L,D-transpeptidase catalytic domain ISX50_00865 PF00925 GTP cyclohydrolase II ISX50_00875 PF03918 Cytochrome C biogenesis protein ISX50_00880 PF08534 Redoxin ISX50_00885 PF01578 Cytochrome C assembly protein ISX50_00885 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ISX50_00890 PF03916 Polysulphide reductase, NrfD ISX50_00895 PF13247 4Fe-4S dicluster domain ISX50_00905 PF02335 Cytochrome c552 ISX50_00910 PF00581 Rhodanese-like domain ISX50_00920 PF03989 DNA gyrase C-terminal domain, beta-propeller ISX50_00920 PF00521 DNA gyrase/topoisomerase IV, subunit A ISX50_00930 PF02867 Ribonucleotide reductase, barrel domain ISX50_00930 PF00317 Ribonucleotide reductase, all-alpha domain ISX50_00930 PF03477 ATP cone domain ISX50_00935 PF00268 Ribonucleotide reductase, small chain ISX50_00940 PF00175 Oxidoreductase NAD-binding domain ISX50_00940 PF00111 2Fe-2S iron-sulfur cluster binding domain ISX50_00940 PF00970 Oxidoreductase FAD-binding domain ISX50_00950 PF02613 Nitrate reductase delta subunit ISX50_00955 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISX50_00955 PF00384 Molybdopterin oxidoreductase ISX50_00955 PF01568 Molydopterin dinucleotide binding domain ISX50_00960 PF12800 4Fe-4S binding domain ISX50_00960 PF13247 4Fe-4S dicluster domain ISX50_00965 PF04976 DMSO reductase anchor subunit (DmsC) ISX50_00970 PF00994 Probable molybdopterin binding domain ISX50_00970 PF02464 Competence-damaged protein ISX50_00985 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ISX50_00990 PF16653 Saccharopine dehydrogenase C-terminal domain ISX50_00990 PF03435 Saccharopine dehydrogenase NADP binding domain ISX50_00995 PF00202 Aminotransferase class-III ISX50_01020 PF01066 CDP-alcohol phosphatidyltransferase ISX50_01025 PF01541 GIY-YIG catalytic domain ISX50_01025 PF08459 UvrC Helix-hairpin-helix N-terminal ISX50_01025 PF02151 UvrB/uvrC motif ISX50_01030 PF00196 Bacterial regulatory proteins, luxR family ISX50_01030 PF00072 Response regulator receiver domain ISX50_01035 PF00136 DNA polymerase family B ISX50_01035 PF03104 DNA polymerase family B, exonuclease domain ISX50_01045 PF01132 Elongation factor P (EF-P) OB domain ISX50_01045 PF08207 Elongation factor P (EF-P) KOW-like domain ISX50_01045 PF09285 Elongation factor P, C-terminal ISX50_01050 PF04269 Protein of unknown function, DUF440 ISX50_01060 PF01479 S4 domain ISX50_01060 PF00849 RNA pseudouridylate synthase ISX50_01065 PF01300 Telomere recombination ISX50_01070 PF02811 PHP domain ISX50_01075 PF08056 Tryptophan operon leader peptide ISX50_01080 PF04715 Anthranilate synthase component I, N terminal region ISX50_01080 PF00425 chorismate binding enzyme ISX50_01085 PF00117 Glutamine amidotransferase class-I ISX50_01090 PF00591 Glycosyl transferase family, a/b domain ISX50_01090 PF02885 Glycosyl transferase family, helical bundle domain ISX50_01095 PF00218 Indole-3-glycerol phosphate synthase ISX50_01095 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ISX50_01100 PF00291 Pyridoxal-phosphate dependent enzyme ISX50_01105 PF00290 Tryptophan synthase alpha chain ISX50_01110 PF00375 Sodium:dicarboxylate symporter family ISX50_01115 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ISX50_01120 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ISX50_01125 PF03480 Bacterial extracellular solute-binding protein, family 7 ISX50_01130 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISX50_01135 PF00155 Aminotransferase class I and II ISX50_01140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_01140 PF03466 LysR substrate binding domain ISX50_01150 PF04279 Intracellular septation protein A ISX50_01155 PF03061 Thioesterase superfamily ISX50_01160 PF03795 YCII-related domain ISX50_01170 PF01717 Cobalamin-independent synthase, Catalytic domain ISX50_01170 PF08267 Cobalamin-independent synthase, N-terminal domain ISX50_01175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_01175 PF03466 LysR substrate binding domain ISX50_01190 PF04055 Radical SAM superfamily ISX50_01190 PF11842 Domain of unknown function (DUF3362) ISX50_01190 PF08497 Radical SAM N-terminal ISX50_01195 PF01381 Helix-turn-helix ISX50_01195 PF07883 Cupin domain ISX50_01200 PF03594 Benzoate membrane transport protein ISX50_01210 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ISX50_01215 PF00535 Glycosyl transferase family 2 ISX50_01220 PF00486 Transcriptional regulatory protein, C terminal ISX50_01220 PF00072 Response regulator receiver domain ISX50_01240 PF01266 FAD dependent oxidoreductase ISX50_01245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_01245 PF03466 LysR substrate binding domain ISX50_01265 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ISX50_01265 PF01464 Transglycosylase SLT domain ISX50_01290 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ISX50_01300 PF03480 Bacterial extracellular solute-binding protein, family 7 ISX50_01310 PF00455 DeoR C terminal sensor domain ISX50_01310 PF08220 DeoR-like helix-turn-helix domain ISX50_01315 PF03616 Sodium/glutamate symporter ISX50_01325 PF06610 L-alanine exporter ISX50_01330 PF00072 Response regulator receiver domain ISX50_01330 PF09308 LuxQ, periplasmic ISX50_01330 PF00512 His Kinase A (phospho-acceptor) domain ISX50_01330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_01345 PF02445 Quinolinate synthetase A protein ISX50_01350 PF13174 Tetratricopeptide repeat ISX50_01350 PF16331 TolA binding protein trimerisation ISX50_01355 PF00691 OmpA family ISX50_01360 PF07676 WD40-like Beta Propeller Repeat ISX50_01360 PF04052 TolB amino-terminal domain ISX50_01370 PF02472 Biopolymer transport protein ExbD/TolR ISX50_01375 PF01618 MotA/TolQ/ExbB proton channel family ISX50_01380 PF03061 Thioesterase superfamily ISX50_01390 PF08173 Membrane bound YbgT-like protein ISX50_01395 PF02322 Cytochrome bd terminal oxidase subunit II ISX50_01400 PF01654 Cytochrome bd terminal oxidase subunit I ISX50_01405 PF17864 RuvB AAA lid domain ISX50_01405 PF05491 RuvB C-terminal winged helix domain ISX50_01405 PF05496 Holliday junction DNA helicase RuvB P-loop domain ISX50_01410 PF07499 RuvA, C-terminal domain ISX50_01410 PF01330 RuvA N terminal domain ISX50_01415 PF13426 PAS domain ISX50_01415 PF08447 PAS fold ISX50_01415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_01420 PF02075 Crossover junction endodeoxyribonuclease RuvC ISX50_01425 PF00152 tRNA synthetases class II (D, K and N) ISX50_01425 PF01336 OB-fold nucleic acid binding domain ISX50_01425 PF02938 GAD domain ISX50_01430 PF01904 Protein of unknown function DUF72 ISX50_01435 PF13649 Methyltransferase domain ISX50_01440 PF08003 Protein of unknown function (DUF1698) ISX50_01445 PF08443 RimK-like ATP-grasp domain ISX50_01445 PF18030 RimK PreATP-grasp domain ISX50_01460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISX50_01460 PF00384 Molybdopterin oxidoreductase ISX50_01460 PF01568 Molydopterin dinucleotide binding domain ISX50_01460 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ISX50_01460 PF12838 4Fe-4S dicluster domain ISX50_01465 PF04310 MukB N-terminal ISX50_01465 PF16330 MukB hinge domain ISX50_01470 PF04288 MukE-like family ISX50_01475 PF17193 MukF C-terminal domain ISX50_01475 PF17192 MukF middle domain ISX50_01475 PF03882 MukF winged-helix domain ISX50_01480 PF13847 Methyltransferase domain ISX50_01485 PF02698 DUF218 domain ISX50_01490 PF00072 Response regulator receiver domain ISX50_01490 PF00486 Transcriptional regulatory protein, C terminal ISX50_01495 PF02613 Nitrate reductase delta subunit ISX50_01500 PF00356 Bacterial regulatory proteins, lacI family ISX50_01505 PF04994 TfoX C-terminal domain ISX50_01505 PF04993 TfoX N-terminal domain ISX50_01525 PF08323 Starch synthase catalytic domain ISX50_01525 PF00534 Glycosyl transferases group 1 ISX50_01530 PF00483 Nucleotidyl transferase ISX50_01535 PF08272 Topoisomerase I zinc-ribbon-like ISX50_01535 PF01131 DNA topoisomerase ISX50_01535 PF01751 Toprim domain ISX50_01535 PF01396 Topoisomerase DNA binding C4 zinc finger ISX50_01540 PF10692 Protein of unknown function (DUF2498) ISX50_01545 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ISX50_01555 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ISX50_01560 PF04376 Arginine-tRNA-protein transferase, N terminus ISX50_01560 PF04377 Arginine-tRNA-protein transferase, C terminus ISX50_01565 PF01176 Translation initiation factor 1A / IF-1 ISX50_01570 PF07724 AAA domain (Cdc48 subfamily) ISX50_01570 PF17871 AAA lid domain ISX50_01570 PF02861 Clp amino terminal domain, pathogenicity island component ISX50_01570 PF10431 C-terminal, D2-small domain, of ClpB protein ISX50_01570 PF00004 ATPase family associated with various cellular activities (AAA) ISX50_01575 PF02617 ATP-dependent Clp protease adaptor protein ClpS ISX50_01580 PF00313 'Cold-shock' DNA-binding domain ISX50_01585 PF03971 Monomeric isocitrate dehydrogenase ISX50_01590 PF00849 RNA pseudouridylate synthase ISX50_01595 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ISX50_01600 PF13609 Gram-negative porin ISX50_01605 PF06733 DEAD_2 ISX50_01605 PF13307 Helicase C-terminal domain ISX50_01610 PF01925 Sulfite exporter TauE/SafE ISX50_01620 PF10689 Protein of unknown function (DUF2496) ISX50_01625 PF08007 Cupin superfamily protein ISX50_01630 PF00672 HAMP domain ISX50_01630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_01635 PF07690 Major Facilitator Superfamily ISX50_01640 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ISX50_01640 PF00326 Prolyl oligopeptidase family ISX50_01645 PF03372 Endonuclease/Exonuclease/phosphatase family ISX50_01650 PF13402 Peptidase M60, enhancin and enhancin-like ISX50_01650 PF18650 Immunomodulating metalloprotease N-terminal domain ISX50_01650 PF18642 Immunomodulating metalloprotease helical domain ISX50_01655 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_01660 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_01665 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISX50_01670 PF00005 ABC transporter ISX50_01685 PF02901 Pyruvate formate lyase-like ISX50_01685 PF01228 Glycine radical ISX50_01695 PF04055 Radical SAM superfamily ISX50_01700 PF03887 YfbU domain ISX50_01705 PF06798 PrkA serine protein kinase C-terminal domain ISX50_01705 PF08298 PrkA AAA domain ISX50_01710 PF04285 Protein of unknown function (DUF444) ISX50_01715 PF04293 SpoVR like protein ISX50_01720 PF01343 Peptidase family S49 ISX50_01720 PF08496 Peptidase family S49 N-terminal ISX50_01725 PF00106 short chain dehydrogenase ISX50_01730 PF00154 recA bacterial DNA recombination protein ISX50_01740 PF07733 Bacterial DNA polymerase III alpha NTPase domain ISX50_01740 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ISX50_01740 PF14579 Helix-hairpin-helix motif ISX50_01740 PF02811 PHP domain ISX50_01740 PF01336 OB-fold nucleic acid binding domain ISX50_01745 PF01584 CheW-like domain ISX50_01745 PF00072 Response regulator receiver domain ISX50_01750 PF00480 ROK family ISX50_01755 PF02887 Pyruvate kinase, alpha/beta domain ISX50_01755 PF00224 Pyruvate kinase, barrel domain ISX50_01760 PF01734 Patatin-like phospholipase ISX50_01780 PF00367 phosphotransferase system, EIIB ISX50_01780 PF02378 Phosphotransferase system, EIIC ISX50_01785 PF01026 TatD related DNase ISX50_01790 PF09115 DNA polymerase III, delta subunit, C terminal ISX50_01795 PF02223 Thymidylate kinase ISX50_01800 PF02618 YceG-like family ISX50_01805 PF01063 Amino-transferase class IV ISX50_01810 PF02801 Beta-ketoacyl synthase, C-terminal domain ISX50_01810 PF00109 Beta-ketoacyl synthase, N-terminal domain ISX50_01815 PF00550 Phosphopantetheine attachment site ISX50_01825 PF00698 Acyl transferase domain ISX50_01830 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ISX50_01830 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ISX50_01835 PF02504 Fatty acid synthesis protein ISX50_01840 PF01783 Ribosomal L32p protein family ISX50_01845 PF02620 Large ribosomal RNA subunit accumulation protein YceD ISX50_01850 PF02545 Maf-like protein ISX50_01855 PF00849 RNA pseudouridylate synthase ISX50_01855 PF01479 S4 domain ISX50_01860 PF12111 Polyribonucleotide phosphorylase C terminal ISX50_01860 PF10150 Ribonuclease E/G family ISX50_01860 PF00575 S1 RNA binding domain ISX50_01865 PF01740 STAS domain ISX50_01865 PF00916 Sulfate permease family ISX50_01870 PF01451 Low molecular weight phosphotyrosine protein phosphatase ISX50_01875 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ISX50_01875 PF12557 Cob(I)alamin adenosyltransferase N terminal ISX50_01880 PF05170 AsmA family ISX50_01885 PF00485 Phosphoribulokinase / Uridine kinase family ISX50_01890 PF10609 NUBPL iron-transfer P-loop NTPase ISX50_01895 PF09334 tRNA synthetases class I (M) ISX50_01895 PF01588 Putative tRNA binding domain ISX50_01905 PF07840 FadR C-terminal domain ISX50_01905 PF00392 Bacterial regulatory proteins, gntR family ISX50_01910 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ISX50_01915 PF02600 Disulfide bond formation protein DsbB ISX50_01920 PF07517 SecA DEAD-like domain ISX50_01920 PF01043 SecA preprotein cross-linking domain ISX50_01920 PF07516 SecA Wing and Scaffold domain ISX50_01920 PF02810 SEC-C motif ISX50_01925 PF01207 Dihydrouridine synthase (Dus) ISX50_01930 PF00990 Diguanylate cyclase, GGDEF domain ISX50_01930 PF05230 MASE2 domain ISX50_01945 PF04217 Protein of unknown function, DUF412 ISX50_01950 PF00871 Acetokinase family ISX50_01955 PF07085 DRTGG domain ISX50_01955 PF01515 Phosphate acetyl/butaryl transferase ISX50_01960 PF13409 Glutathione S-transferase, N-terminal domain ISX50_01965 PF00005 ABC transporter ISX50_01965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISX50_01970 PF00005 ABC transporter ISX50_01970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISX50_01975 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_01975 PF12911 N-terminal TM domain of oligopeptide transport permease C ISX50_01980 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_01985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISX50_01990 PF02391 MoaE protein ISX50_01995 PF02597 ThiS family ISX50_02000 PF01967 MoaC family ISX50_02005 PF00994 Probable molybdopterin binding domain ISX50_02010 PF06463 Molybdenum Cofactor Synthesis C ISX50_02010 PF04055 Radical SAM superfamily ISX50_02015 PF01933 Uncharacterised protein family UPF0052 ISX50_02020 PF01627 Hpt domain ISX50_02025 PF02954 Bacterial regulatory protein, Fis family ISX50_02025 PF00072 Response regulator receiver domain ISX50_02025 PF00158 Sigma-54 interaction domain ISX50_02030 PF17757 UvrB interaction domain ISX50_02030 PF00271 Helicase conserved C-terminal domain ISX50_02030 PF04851 Type III restriction enzyme, res subunit ISX50_02030 PF02151 UvrB/uvrC motif ISX50_02030 PF12344 Ultra-violet resistance protein B ISX50_02040 PF02508 Rnf-Nqr subunit, membrane protein ISX50_02045 PF04060 Putative Fe-S cluster ISX50_02050 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ISX50_02050 PF12838 4Fe-4S dicluster domain ISX50_02050 PF10531 SLBB domain ISX50_02050 PF13375 RnfC Barrel sandwich hybrid domain ISX50_02055 PF03116 NQR2, RnfD, RnfE family ISX50_02060 PF04205 FMN-binding domain ISX50_02065 PF02508 Rnf-Nqr subunit, membrane protein ISX50_02070 PF10576 Iron-sulfur binding domain of endonuclease III ISX50_02070 PF00633 Helix-hairpin-helix motif ISX50_02070 PF00730 HhH-GPD superfamily base excision DNA repair protein ISX50_02075 PF00689 Cation transporting ATPase, C-terminus ISX50_02075 PF00690 Cation transporter/ATPase, N-terminus ISX50_02080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ISX50_02085 PF10952 Protein of unknown function (DUF2753) ISX50_02090 PF00691 OmpA family ISX50_02090 PF18393 MotY N-terminal domain ISX50_02095 PF00929 Exonuclease ISX50_02100 PF13726 Na+-H+ antiporter family ISX50_02100 PF03553 Na+/H+ antiporter family ISX50_02110 PF00462 Glutaredoxin ISX50_02115 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ISX50_02115 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ISX50_02130 PF12262 Bacterial virulence factor lipase N-terminal ISX50_02135 PF17158 Membrane-associated sensor, integral membrane domain ISX50_02135 PF00990 Diguanylate cyclase, GGDEF domain ISX50_02140 PF00512 His Kinase A (phospho-acceptor) domain ISX50_02140 PF00072 Response regulator receiver domain ISX50_02140 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISX50_02140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_02140 PF01627 Hpt domain ISX50_02145 PF00563 EAL domain ISX50_02145 PF00990 Diguanylate cyclase, GGDEF domain ISX50_02145 PF13426 PAS domain ISX50_02150 PF00196 Bacterial regulatory proteins, luxR family ISX50_02150 PF00072 Response regulator receiver domain ISX50_02170 PF00672 HAMP domain ISX50_02170 PF02743 Cache domain ISX50_02170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_02175 PF00196 Bacterial regulatory proteins, luxR family ISX50_02175 PF00072 Response regulator receiver domain ISX50_02180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_02180 PF03466 LysR substrate binding domain ISX50_02185 PF00171 Aldehyde dehydrogenase family ISX50_02185 PF00465 Iron-containing alcohol dehydrogenase ISX50_02190 PF01914 MarC family integral membrane protein ISX50_02195 PF00027 Cyclic nucleotide-binding domain ISX50_02195 PF00520 Ion transport protein ISX50_02200 PF07963 Prokaryotic N-terminal methylation motif ISX50_02205 PF02774 Semialdehyde dehydrogenase, dimerisation domain ISX50_02205 PF01118 Semialdehyde dehydrogenase, NAD binding domain ISX50_02210 PF03553 Na+/H+ antiporter family ISX50_02225 PF04245 37-kD nucleoid-associated bacterial protein ISX50_02230 PF07208 Protein of unknown function (DUF1414) ISX50_02235 PF00884 Sulfatase ISX50_02235 PF11893 Domain of unknown function (DUF3413) ISX50_02250 PF00672 HAMP domain ISX50_02250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_02250 PF02743 Cache domain ISX50_02255 PF00850 Histone deacetylase domain ISX50_02260 PF00106 short chain dehydrogenase ISX50_02270 PF01131 DNA topoisomerase ISX50_02270 PF01751 Toprim domain ISX50_02275 PF00881 Nitroreductase family ISX50_02280 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ISX50_02280 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_02285 PF01343 Peptidase family S49 ISX50_02290 PF17763 Glutaminase/Asparaginase C-terminal domain ISX50_02290 PF00710 Asparaginase, N-terminal ISX50_02295 PF07023 Protein of unknown function (DUF1315) ISX50_02305 PF01641 SelR domain ISX50_02310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ISX50_02310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ISX50_02315 PF01263 Aldose 1-epimerase ISX50_02320 PF01156 Inosine-uridine preferring nucleoside hydrolase ISX50_02325 PF13847 Methyltransferase domain ISX50_02340 PF02028 BCCT, betaine/carnitine/choline family transporter ISX50_02345 PF03692 Putative zinc- or iron-chelating domain ISX50_02350 PF03692 Putative zinc- or iron-chelating domain ISX50_02355 PF00230 Major intrinsic protein ISX50_02360 PF02132 RecR protein ISX50_02360 PF13662 Toprim domain ISX50_02365 PF02575 YbaB/EbfC DNA-binding family ISX50_02370 PF12170 DNA polymerase III tau subunit V interacting with alpha ISX50_02370 PF12169 DNA polymerase III subunits gamma and tau domain III ISX50_02370 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ISX50_02375 PF00156 Phosphoribosyl transferase domain ISX50_02380 PF04304 Protein of unknown function (DUF454) ISX50_02390 PF00072 Response regulator receiver domain ISX50_02395 PF03466 LysR substrate binding domain ISX50_02395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_02400 PF00156 Phosphoribosyl transferase domain ISX50_02405 PF02674 Colicin V production protein ISX50_02410 PF05036 Sporulation related domain ISX50_02415 PF08245 Mur ligase middle domain ISX50_02415 PF02875 Mur ligase family, glutamate ligase domain ISX50_02420 PF01039 Carboxyl transferase domain ISX50_02420 PF17848 Acetyl-coA carboxylase zinc finger domain ISX50_02425 PF01416 tRNA pseudouridine synthase ISX50_02435 PF01118 Semialdehyde dehydrogenase, NAD binding domain ISX50_02435 PF02774 Semialdehyde dehydrogenase, dimerisation domain ISX50_02440 PF11890 Domain of unknown function (DUF3410) ISX50_02440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISX50_02440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISX50_02445 PF00109 Beta-ketoacyl synthase, N-terminal domain ISX50_02445 PF02801 Beta-ketoacyl synthase, C-terminal domain ISX50_02450 PF01266 FAD dependent oxidoreductase ISX50_02450 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ISX50_02455 PF03358 NADPH-dependent FMN reductase ISX50_02460 PF08891 YfcL protein ISX50_02465 PF04315 Elongation factor P hydroxylase ISX50_02470 PF03458 UPF0126 domain ISX50_02475 PF01264 Chorismate synthase ISX50_02490 PF00069 Protein kinase domain ISX50_02490 PF03793 PASTA domain ISX50_02500 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ISX50_02500 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ISX50_02510 PF07670 Nucleoside recognition ISX50_02510 PF07662 Na+ dependent nucleoside transporter C-terminus ISX50_02510 PF01773 Na+ dependent nucleoside transporter N-terminus ISX50_02515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_02515 PF03466 LysR substrate binding domain ISX50_02520 PF13406 Transglycosylase SLT domain ISX50_02525 PF05166 YcgL domain ISX50_02530 PF03775 Septum formation inhibitor MinC, C-terminal domain ISX50_02530 PF05209 Septum formation inhibitor MinC, N-terminal domain ISX50_02535 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ISX50_02540 PF03776 Septum formation topological specificity factor MinE ISX50_02545 PF00570 HRDC domain ISX50_02545 PF01612 3'-5' exonuclease ISX50_02550 PF13193 AMP-binding enzyme C-terminal domain ISX50_02550 PF00501 AMP-binding enzyme ISX50_02555 PF00561 alpha/beta hydrolase fold ISX50_02570 PF00814 Glycoprotease family ISX50_02575 PF04851 Type III restriction enzyme, res subunit ISX50_02575 PF13307 Helicase C-terminal domain ISX50_02585 PF00551 Formyl transferase ISX50_02585 PF01842 ACT domain ISX50_02590 PF06185 YecM protein ISX50_02595 PF00750 tRNA synthetases class I (R) ISX50_02595 PF05746 DALR anticodon binding domain ISX50_02595 PF03485 Arginyl tRNA synthetase N terminal domain ISX50_02610 PF07670 Nucleoside recognition ISX50_02610 PF02421 Ferrous iron transport protein B ISX50_02610 PF07664 Ferrous iron transport protein B C terminus ISX50_02615 PF04023 FeoA domain ISX50_02620 PF12833 Helix-turn-helix domain ISX50_02625 PF01297 Zinc-uptake complex component A periplasmic ISX50_02630 PF00005 ABC transporter ISX50_02635 PF00950 ABC 3 transport family ISX50_02640 PF00549 CoA-ligase ISX50_02640 PF02629 CoA binding domain ISX50_02645 PF08442 ATP-grasp domain ISX50_02645 PF00549 CoA-ligase ISX50_02650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ISX50_02650 PF00364 Biotin-requiring enzyme ISX50_02650 PF02817 e3 binding domain ISX50_02655 PF00676 Dehydrogenase E1 component ISX50_02655 PF16078 2-oxoglutarate dehydrogenase N-terminus ISX50_02655 PF02779 Transketolase, pyrimidine binding domain ISX50_02655 PF16870 2-oxoglutarate dehydrogenase C-terminal ISX50_02660 PF13085 2Fe-2S iron-sulfur cluster binding domain ISX50_02665 PF00890 FAD binding domain ISX50_02665 PF02910 Fumarate reductase flavoprotein C-term ISX50_02670 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ISX50_02675 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ISX50_02680 PF00285 Citrate synthase, C-terminal domain ISX50_02685 PF01784 NIF3 (NGG1p interacting factor 3) ISX50_02695 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ISX50_02695 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ISX50_02695 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ISX50_02695 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ISX50_02700 PF17206 SeqA protein N-terminal domain ISX50_02700 PF03925 SeqA protein C-terminal domain ISX50_02705 PF12697 Alpha/beta hydrolase family ISX50_02715 PF00258 Flavodoxin ISX50_02725 PF01475 Ferric uptake regulator family ISX50_02730 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ISX50_02730 PF00749 tRNA synthetases class I (E and Q), catalytic domain ISX50_02735 PF02378 Phosphotransferase system, EIIC ISX50_02735 PF00367 phosphotransferase system, EIIB ISX50_02735 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ISX50_02740 PF01979 Amidohydrolase family ISX50_02745 PF00480 ROK family ISX50_02745 PF01047 MarR family ISX50_02750 PF02254 TrkA-N domain ISX50_02750 PF00999 Sodium/hydrogen exchanger family ISX50_02755 PF00733 Asparagine synthase ISX50_02755 PF13537 Glutamine amidotransferase domain ISX50_02765 PF00854 POT family ISX50_02770 PF00762 Ferrochelatase ISX50_02775 PF05191 Adenylate kinase, active site lid ISX50_02780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_02780 PF00183 Hsp90 protein ISX50_02785 PF00486 Transcriptional regulatory protein, C terminal ISX50_02790 PF17323 Trans-membrane regulatory protein ToxS ISX50_02800 PF12850 Calcineurin-like phosphoesterase superfamily domain ISX50_02815 PF07556 Protein of unknown function (DUF1538) ISX50_02820 PF07556 Protein of unknown function (DUF1538) ISX50_02825 PF08338 Domain of unknown function (DUF1731) ISX50_02825 PF01370 NAD dependent epimerase/dehydratase family ISX50_02830 PF00106 short chain dehydrogenase ISX50_02835 PF00085 Thioredoxin ISX50_02840 PF16200 C-terminal region of band_7 ISX50_02840 PF01145 SPFH domain / Band 7 family ISX50_02850 PF13411 MerR HTH family regulatory protein ISX50_02865 PF03573 outer membrane porin, OprD family ISX50_02870 PF01653 NAD-dependent DNA ligase adenylation domain ISX50_02870 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ISX50_02870 PF12826 Helix-hairpin-helix motif ISX50_02870 PF03120 NAD-dependent DNA ligase OB-fold domain ISX50_02870 PF00533 BRCA1 C Terminus (BRCT) domain ISX50_02875 PF04354 ZipA, C-terminal FtsZ-binding domain ISX50_02885 PF00291 Pyridoxal-phosphate dependent enzyme ISX50_02890 PF00381 PTS HPr component phosphorylation site ISX50_02895 PF05524 PEP-utilising enzyme, N-terminal ISX50_02895 PF02896 PEP-utilising enzyme, TIM barrel domain ISX50_02895 PF00391 PEP-utilising enzyme, mobile domain ISX50_02900 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ISX50_02905 PF00700 Bacterial flagellin C-terminal helical region ISX50_02905 PF00669 Bacterial flagellin N-terminal helical region ISX50_02905 PF07196 Flagellin hook IN motif ISX50_02910 PF07196 Flagellin hook IN motif ISX50_02910 PF00700 Bacterial flagellin C-terminal helical region ISX50_02910 PF00669 Bacterial flagellin N-terminal helical region ISX50_02915 PF04261 Dyp-type peroxidase family ISX50_02920 PF11143 Protein of unknown function (DUF2919) ISX50_02940 PF03960 ArsC family ISX50_02945 PF01546 Peptidase family M20/M25/M40 ISX50_02945 PF07687 Peptidase dimerisation domain ISX50_02960 PF06804 NlpB/DapX lipoprotein ISX50_02965 PF00701 Dihydrodipicolinate synthetase family ISX50_02970 PF01842 ACT domain ISX50_02975 PF00578 AhpC/TSA family ISX50_02980 PF01594 AI-2E family transporter ISX50_02990 PF13181 Tetratricopeptide repeat ISX50_02990 PF01435 Peptidase family M48 ISX50_02995 PF03960 ArsC family ISX50_03000 PF03358 NADPH-dependent FMN reductase ISX50_03015 PF00860 Permease family ISX50_03025 PF00586 AIR synthase related protein, N-terminal domain ISX50_03025 PF02769 AIR synthase related protein, C-terminal domain ISX50_03030 PF00551 Formyl transferase ISX50_03035 PF13230 Glutamine amidotransferases class-II ISX50_03040 PF13580 SIS domain ISX50_03045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ISX50_03045 PF09317 Domain of unknown function (DUF1974) ISX50_03045 PF02770 Acyl-CoA dehydrogenase, middle domain ISX50_03045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ISX50_03055 PF00929 Exonuclease ISX50_03060 PF00075 RNase H ISX50_03065 PF08241 Methyltransferase domain ISX50_03070 PF16123 Hydroxyacylglutathione hydrolase C-terminus ISX50_03070 PF00753 Metallo-beta-lactamase superfamily ISX50_03075 PF01476 LysM domain ISX50_03075 PF01464 Transglycosylase SLT domain ISX50_03085 PF03372 Endonuclease/Exonuclease/phosphatase family ISX50_03090 PF00543 Nitrogen regulatory protein P-II ISX50_03095 PF00034 Cytochrome c ISX50_03100 PF01171 PP-loop family ISX50_03100 PF09179 TilS substrate binding domain ISX50_03100 PF11734 TilS substrate C-terminal domain ISX50_03105 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ISX50_03110 PF07733 Bacterial DNA polymerase III alpha NTPase domain ISX50_03110 PF14579 Helix-hairpin-helix motif ISX50_03110 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ISX50_03110 PF02811 PHP domain ISX50_03110 PF01336 OB-fold nucleic acid binding domain ISX50_03115 PF01351 Ribonuclease HII ISX50_03120 PF02684 Lipid-A-disaccharide synthetase ISX50_03125 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ISX50_03125 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_03130 PF07977 FabA-like domain ISX50_03135 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ISX50_03135 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_03140 PF03938 Outer membrane protein (OmpH-like) ISX50_03145 PF07244 Surface antigen variable number repeat ISX50_03145 PF01103 Surface antigen ISX50_03150 PF17820 PDZ domain ISX50_03150 PF02163 Peptidase family M50 ISX50_03155 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ISX50_03155 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ISX50_03155 PF13288 DXP reductoisomerase C-terminal domain ISX50_03165 PF01255 Putative undecaprenyl diphosphate synthase ISX50_03170 PF01765 Ribosome recycling factor ISX50_03175 PF00696 Amino acid kinase family ISX50_03180 PF00889 Elongation factor TS ISX50_03185 PF00318 Ribosomal protein S2 ISX50_03190 PF00557 Metallopeptidase family M24 ISX50_03195 PF01842 ACT domain ISX50_03195 PF08335 GlnD PII-uridylyltransferase ISX50_03195 PF01966 HD domain ISX50_03195 PF01909 Nucleotidyltransferase domain ISX50_03200 PF11944 Protein of unknown function (DUF3461) ISX50_03205 PF00849 RNA pseudouridylate synthase ISX50_03210 PF04287 tRNA pseudouridine synthase C ISX50_03235 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ISX50_03250 PF00444 Ribosomal protein L36 ISX50_03255 PF01197 Ribosomal protein L31 ISX50_03260 PF01980 tRNA-methyltransferase O ISX50_03260 PF18389 TrmO C-terminal domain ISX50_03265 PF04073 Aminoacyl-tRNA editing domain ISX50_03265 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ISX50_03265 PF03129 Anticodon binding domain ISX50_03275 PF06786 Uncharacterised protein family (UPF0253) ISX50_03290 PF00464 Serine hydroxymethyltransferase ISX50_03300 PF00128 Alpha amylase, catalytic domain ISX50_03300 PF16657 Maltogenic Amylase, C-terminal domain ISX50_03305 PF02378 Phosphotransferase system, EIIC ISX50_03305 PF00367 phosphotransferase system, EIIB ISX50_03310 PF00356 Bacterial regulatory proteins, lacI family ISX50_03325 PF09383 NIL domain ISX50_03325 PF00005 ABC transporter ISX50_03330 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_03335 PF03180 NLPA lipoprotein ISX50_03340 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) ISX50_03345 PF07348 Syd protein (SUKH-2) ISX50_03350 PF14489 QueF-like protein ISX50_03350 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ISX50_03360 PF00990 Diguanylate cyclase, GGDEF domain ISX50_03365 PF11892 Domain of unknown function (DUF3412) ISX50_03365 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ISX50_03365 PF03641 Possible lysine decarboxylase ISX50_03370 PF01367 5'-3' exonuclease, C-terminal SAM fold ISX50_03370 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ISX50_03375 PF01728 FtsJ-like methyltransferase ISX50_03375 PF18125 RlmM ferredoxin-like domain ISX50_03390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_03390 PF03466 LysR substrate binding domain ISX50_03395 PF02568 Thiamine biosynthesis protein (ThiI) ISX50_03395 PF02926 THUMP domain ISX50_03400 PF13677 Membrane MotB of proton-channel complex MotA/MotB ISX50_03400 PF00691 OmpA family ISX50_03405 PF01618 MotA/TolQ/ExbB proton channel family ISX50_03410 PF02609 Exonuclease VII small subunit ISX50_03415 PF00348 Polyprenyl synthetase ISX50_03420 PF02780 Transketolase, C-terminal domain ISX50_03420 PF02779 Transketolase, pyrimidine binding domain ISX50_03420 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ISX50_03430 PF04608 Phosphatidylglycerophosphatase A ISX50_03435 PF00586 AIR synthase related protein, N-terminal domain ISX50_03435 PF02769 AIR synthase related protein, C-terminal domain ISX50_03440 PF01029 NusB family ISX50_03445 PF00885 6,7-dimethyl-8-ribityllumazine synthase ISX50_03450 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ISX50_03450 PF00925 GTP cyclohydrolase II ISX50_03455 PF00677 Lumazine binding domain ISX50_03460 PF01872 RibD C-terminal domain ISX50_03460 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ISX50_03465 PF03477 ATP cone domain ISX50_03470 PF00171 Aldehyde dehydrogenase family ISX50_03475 PF00696 Amino acid kinase family ISX50_03475 PF01472 PUA domain ISX50_03480 PF07417 Sigma factor-binding transcriptional regulator Crl ISX50_03485 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) ISX50_03490 PF00156 Phosphoribosyl transferase domain ISX50_03495 PF00860 Permease family ISX50_03500 PF01546 Peptidase family M20/M25/M40 ISX50_03500 PF07687 Peptidase dimerisation domain ISX50_03520 PF00962 Adenosine/AMP deaminase ISX50_03535 PF01588 Putative tRNA binding domain ISX50_03540 PF00356 Bacterial regulatory proteins, lacI family ISX50_03545 PF01263 Aldose 1-epimerase ISX50_03550 PF10509 Galactokinase galactose-binding signature ISX50_03550 PF08544 GHMP kinases C terminal ISX50_03550 PF00288 GHMP kinases N terminal domain ISX50_03555 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ISX50_03555 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ISX50_03560 PF16363 GDP-mannose 4,6 dehydratase ISX50_03565 PF00356 Bacterial regulatory proteins, lacI family ISX50_03570 PF02837 Glycosyl hydrolases family 2, sugar binding domain ISX50_03570 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ISX50_03570 PF00703 Glycosyl hydrolases family 2 ISX50_03570 PF16353 Domain of unknown function(DUF4981) ISX50_03570 PF02929 Beta galactosidase small chain ISX50_03575 PF04074 YhcH/YjgK/YiaL ISX50_03580 PF13520 Amino acid permease ISX50_03590 PF02929 Beta galactosidase small chain ISX50_03590 PF16353 Domain of unknown function(DUF4981) ISX50_03590 PF00703 Glycosyl hydrolases family 2 ISX50_03590 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ISX50_03590 PF02837 Glycosyl hydrolases family 2, sugar binding domain ISX50_03600 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_03605 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_03610 PF00005 ABC transporter ISX50_03610 PF17912 MalK OB fold domain ISX50_03615 PF01554 MatE ISX50_03620 PF00474 Sodium:solute symporter family ISX50_03625 PF16874 Glycosyl hydrolase family 36 C-terminal domain ISX50_03625 PF16875 Glycosyl hydrolase family 36 N-terminal domain ISX50_03630 PF00356 Bacterial regulatory proteins, lacI family ISX50_03635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_03635 PF03466 LysR substrate binding domain ISX50_03640 PF02417 Chromate transporter ISX50_03645 PF01209 ubiE/COQ5 methyltransferase family ISX50_03675 PF00437 Type II/IV secretion system protein ISX50_03705 PF04972 BON domain ISX50_03705 PF00263 Bacterial type II and III secretion system protein ISX50_03705 PF13629 Pilus formation protein N terminal region ISX50_03730 PF02311 AraC-like ligand binding domain ISX50_03730 PF12833 Helix-turn-helix domain ISX50_03735 PF00501 AMP-binding enzyme ISX50_03755 PF09905 DNA-binding protein VF530 ISX50_03785 PF03144 Elongation factor Tu domain 2 ISX50_03785 PF00009 Elongation factor Tu GTP binding domain ISX50_03785 PF00679 Elongation factor G C-terminus ISX50_03785 PF14492 Elongation Factor G, domain II ISX50_03785 PF03764 Elongation factor G, domain IV ISX50_03790 PF18073 Rubredoxin metal binding domain ISX50_03800 PF18429 Domain of unknown function (DUF5609) ISX50_03810 PF01048 Phosphorylase superfamily ISX50_03815 PF01676 Metalloenzyme superfamily ISX50_03820 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ISX50_03820 PF02885 Glycosyl transferase family, helical bundle domain ISX50_03820 PF00591 Glycosyl transferase family, a/b domain ISX50_03825 PF01791 DeoC/LacD family aldolase ISX50_03830 PF01773 Na+ dependent nucleoside transporter N-terminus ISX50_03830 PF07662 Na+ dependent nucleoside transporter C-terminus ISX50_03830 PF07670 Nucleoside recognition ISX50_03835 PF01026 TatD related DNase ISX50_03845 PF00009 Elongation factor Tu GTP binding domain ISX50_03845 PF03144 Elongation factor Tu domain 2 ISX50_03845 PF16658 Class II release factor RF3, C-terminal domain ISX50_03850 PF00583 Acetyltransferase (GNAT) family ISX50_03860 PF13508 Acetyltransferase (GNAT) domain ISX50_03865 PF02036 SCP-2 sterol transfer family ISX50_03870 PF00990 Diguanylate cyclase, GGDEF domain ISX50_03870 PF00563 EAL domain ISX50_03870 PF03707 Bacterial signalling protein N terminal repeat ISX50_03875 PF01136 Peptidase family U32 ISX50_03880 PF01136 Peptidase family U32 ISX50_03885 PF01554 MatE ISX50_03895 PF07719 Tetratricopeptide repeat ISX50_03895 PF13181 Tetratricopeptide repeat ISX50_03900 PF01138 3' exoribonuclease family, domain 1 ISX50_03900 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ISX50_03900 PF00013 KH domain ISX50_03900 PF00575 S1 RNA binding domain ISX50_03900 PF03725 3' exoribonuclease family, domain 2 ISX50_03905 PF00312 Ribosomal protein S15 ISX50_03910 PF01509 TruB family pseudouridylate synthase (N terminal domain) ISX50_03910 PF09157 Pseudouridine synthase II TruB, C-terminal ISX50_03910 PF16198 tRNA pseudouridylate synthase B C-terminal domain ISX50_03915 PF02033 Ribosome-binding factor A ISX50_03920 PF04760 Translation initiation factor IF-2, N-terminal region ISX50_03920 PF08364 Bacterial translation initiation factor IF-2 associated region ISX50_03920 PF11987 Translation-initiation factor 2 ISX50_03920 PF00009 Elongation factor Tu GTP binding domain ISX50_03925 PF00575 S1 RNA binding domain ISX50_03925 PF13184 NusA-like KH domain ISX50_03925 PF08529 NusA N-terminal domain ISX50_03930 PF17384 RimP C-terminal SH3 domain ISX50_03930 PF02576 RimP N-terminal domain ISX50_03945 PF03840 Preprotein translocase SecG subunit ISX50_03950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ISX50_03950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ISX50_03950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ISX50_03950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ISX50_03955 PF00809 Pterin binding enzyme ISX50_03960 PF17862 AAA+ lid domain ISX50_03960 PF00004 ATPase family associated with various cellular activities (AAA) ISX50_03960 PF01434 Peptidase family M41 ISX50_03960 PF06480 FtsH Extracellular ISX50_03965 PF01728 FtsJ-like methyltransferase ISX50_03970 PF01985 CRS1 / YhbY (CRM) domain ISX50_03975 PF03449 Transcription elongation factor, N-terminal ISX50_03975 PF01272 Transcription elongation factor, GreA/GreB, C-term ISX50_03980 PF13609 Gram-negative porin ISX50_03985 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ISX50_03990 PF03448 MgtE intracellular N domain ISX50_03990 PF00571 CBS domain ISX50_03990 PF01769 Divalent cation transporter ISX50_03995 PF00579 tRNA synthetases class I (W and Y) ISX50_04000 PF01476 LysM domain ISX50_04000 PF08525 Opacity-associated protein A N-terminal motif ISX50_04000 PF01551 Peptidase family M23 ISX50_04005 PF00873 AcrB/AcrD/AcrF family ISX50_04015 PF01521 Iron-sulphur cluster biosynthesis ISX50_04020 PF00202 Aminotransferase class-III ISX50_04025 PF01594 AI-2E family transporter ISX50_04030 PF05175 Methyltransferase small domain ISX50_04030 PF08468 Methyltransferase small domain N-terminal ISX50_04035 PF17149 Periplasmic sensor domain found in signal transduction proteins ISX50_04035 PF00672 HAMP domain ISX50_04035 PF00512 His Kinase A (phospho-acceptor) domain ISX50_04035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_04035 PF01627 Hpt domain ISX50_04035 PF00072 Response regulator receiver domain ISX50_04040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISX50_04045 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_04050 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_04050 PF12911 N-terminal TM domain of oligopeptide transport permease C ISX50_04055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISX50_04055 PF00005 ABC transporter ISX50_04060 PF00005 ABC transporter ISX50_04060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISX50_04070 PF01869 BadF/BadG/BcrA/BcrD ATPase family ISX50_04075 PF02838 Glycosyl hydrolase family 20, domain 2 ISX50_04075 PF00728 Glycosyl hydrolase family 20, catalytic domain ISX50_04080 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain ISX50_04080 PF06165 Glycosyltransferase family 36 ISX50_04085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ISX50_04085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ISX50_04085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ISX50_04085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ISX50_04090 PF00005 ABC transporter ISX50_04090 PF08402 TOBE domain ISX50_04100 PF13416 Bacterial extracellular solute-binding protein ISX50_04105 PF00909 Ammonium Transporter Family ISX50_04110 PF00543 Nitrogen regulatory protein P-II ISX50_04115 PF06062 Uncharacterised protein family (UPF0231) ISX50_04120 PF00330 Aconitase family (aconitate hydratase) ISX50_04120 PF06434 Aconitate hydratase 2 N-terminus ISX50_04120 PF11791 Aconitate B N-terminal domain ISX50_04125 PF01734 Patatin-like phospholipase ISX50_04130 PF00912 Transglycosylase ISX50_04130 PF00905 Penicillin binding protein transpeptidase domain ISX50_04130 PF14814 Bifunctional transglycosylase second domain ISX50_04135 PF00271 Helicase conserved C-terminal domain ISX50_04135 PF00270 DEAD/DEAH box helicase ISX50_04135 PF08482 ATP-dependent helicase C-terminal ISX50_04135 PF04408 Helicase associated domain (HA2) ISX50_04140 PF17746 SfsA N-terminal OB domain ISX50_04140 PF03749 Sugar fermentation stimulation protein RE domain ISX50_04145 PF01258 Prokaryotic dksA/traR C4-type zinc finger ISX50_04150 PF00749 tRNA synthetases class I (E and Q), catalytic domain ISX50_04155 PF12627 Probable RNA and SrmB- binding site of polymerase A ISX50_04155 PF01743 Poly A polymerase head domain ISX50_04155 PF12626 Polymerase A arginine-rich C-terminus ISX50_04160 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ISX50_04165 PF02548 Ketopantoate hydroxymethyltransferase ISX50_04170 PF02569 Pantoate-beta-alanine ligase ISX50_04175 PF01061 ABC-2 type transporter ISX50_04180 PF00005 ABC transporter ISX50_04185 PF00916 Sulfate permease family ISX50_04185 PF01740 STAS domain ISX50_04190 PF00484 Carbonic anhydrase ISX50_04195 PF00156 Phosphoribosyl transferase domain ISX50_04200 PF00440 Bacterial regulatory proteins, tetR family ISX50_04205 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_04205 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISX50_04210 PF00364 Biotin-requiring enzyme ISX50_04210 PF02817 e3 binding domain ISX50_04210 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ISX50_04215 PF17831 Pyruvate dehydrogenase E1 component middle domain ISX50_04215 PF00456 Transketolase, thiamine diphosphate binding domain ISX50_04220 PF07729 FCD domain ISX50_04220 PF00392 Bacterial regulatory proteins, gntR family ISX50_04225 PF01510 N-acetylmuramoyl-L-alanine amidase ISX50_04230 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ISX50_04230 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ISX50_04235 PF07963 Prokaryotic N-terminal methylation motif ISX50_04235 PF00114 Pilin (bacterial filament) ISX50_04240 PF00437 Type II/IV secretion system protein ISX50_04240 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ISX50_04245 PF00482 Type II secretion system (T2SS), protein F ISX50_04250 PF01478 Type IV leader peptidase family ISX50_04250 PF06750 Bacterial Peptidase A24 N-terminal domain ISX50_04255 PF01121 Dephospho-CoA kinase ISX50_04260 PF07072 Cell division protein ISX50_04265 PF03884 DNA gyrase inhibitor YacG ISX50_04270 PF01245 Ribosomal protein L19 ISX50_04275 PF01746 tRNA (Guanine-1)-methyltransferase ISX50_04280 PF01782 RimM N-terminal domain ISX50_04280 PF05239 PRC-barrel domain ISX50_04285 PF00886 Ribosomal protein S16 ISX50_04290 PF02978 Signal peptide binding domain ISX50_04290 PF00448 SRP54-type protein, GTPase domain ISX50_04290 PF02881 SRP54-type protein, helical bundle domain ISX50_04295 PF01578 Cytochrome C assembly protein ISX50_04300 PF00571 CBS domain ISX50_04300 PF03471 Transporter associated domain ISX50_04300 PF01595 Cyclin M transmembrane N-terminal domain ISX50_04305 PF02664 S-Ribosylhomocysteinase (LuxS) ISX50_04315 PF04262 Glutamate-cysteine ligase ISX50_04320 PF05193 Peptidase M16 inactive domain ISX50_04320 PF00675 Insulinase (Peptidase family M16) ISX50_04325 PF09335 SNARE associated Golgi protein ISX50_04330 PF08240 Alcohol dehydrogenase GroES-like domain ISX50_04330 PF00107 Zinc-binding dehydrogenase ISX50_04335 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit ISX50_04340 PF00364 Biotin-requiring enzyme ISX50_04340 PF00682 HMGL-like ISX50_04340 PF02436 Conserved carboxylase domain ISX50_04345 PF04277 Oxaloacetate decarboxylase, gamma chain ISX50_04400 PF02599 Global regulator protein family ISX50_04405 PF13840 ACT domain ISX50_04405 PF01842 ACT domain ISX50_04405 PF00696 Amino acid kinase family ISX50_04410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ISX50_04410 PF02272 DHHA1 domain ISX50_04410 PF01411 tRNA synthetases class II (A) ISX50_04415 PF00154 recA bacterial DNA recombination protein ISX50_04420 PF02464 Competence-damaged protein ISX50_04425 PF01624 MutS domain I ISX50_04425 PF05188 MutS domain II ISX50_04425 PF05192 MutS domain III ISX50_04425 PF05190 MutS family domain IV ISX50_04425 PF00488 MutS domain V ISX50_04430 PF04542 Sigma-70 region 2 ISX50_04430 PF04545 Sigma-70, region 4 ISX50_04430 PF04539 Sigma-70 region 3 ISX50_04430 PF00140 Sigma-70 factor, region 1.2 ISX50_04435 PF01551 Peptidase family M23 ISX50_04435 PF01476 LysM domain ISX50_04445 PF01975 Survival protein SurE ISX50_04450 PF01142 tRNA pseudouridine synthase D (TruD) ISX50_04455 PF02542 YgbB family ISX50_04460 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ISX50_04465 PF04977 Septum formation initiator ISX50_04470 PF03952 Enolase, N-terminal domain ISX50_04470 PF00113 Enolase, C-terminal TIM barrel domain ISX50_04475 PF06418 CTP synthase N-terminus ISX50_04475 PF00117 Glutamine amidotransferase class-I ISX50_04480 PF03819 MazG nucleotide pyrophosphohydrolase domain ISX50_04485 PF02824 TGS domain ISX50_04485 PF13291 ACT domain ISX50_04485 PF04607 Region found in RelA / SpoT proteins ISX50_04490 PF01938 TRAM domain ISX50_04490 PF05958 tRNA (Uracil-5-)-methyltransferase ISX50_04495 PF00672 HAMP domain ISX50_04495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_04495 PF01627 Hpt domain ISX50_04495 PF00072 Response regulator receiver domain ISX50_04495 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ISX50_04495 PF00512 His Kinase A (phospho-acceptor) domain ISX50_04500 PF01648 4'-phosphopantetheinyl transferase superfamily ISX50_04505 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ISX50_04510 PF02565 Recombination protein O C terminal ISX50_04510 PF11967 Recombination protein O N terminal ISX50_04515 PF07650 KH domain ISX50_04515 PF01926 50S ribosome-binding GTPase ISX50_04520 PF00035 Double-stranded RNA binding motif ISX50_04520 PF14622 Ribonuclease-III-like ISX50_04525 PF10502 Signal peptidase, peptidase S26 ISX50_04530 PF00679 Elongation factor G C-terminus ISX50_04530 PF00009 Elongation factor Tu GTP binding domain ISX50_04530 PF03144 Elongation factor Tu domain 2 ISX50_04530 PF06421 GTP-binding protein LepA C-terminus ISX50_04540 PF03888 MucB/RseB N-terminal domain ISX50_04540 PF17188 MucB/RseB C-terminal domain ISX50_04545 PF03873 Anti sigma-E protein RseA, C-terminal domain ISX50_04545 PF03872 Anti sigma-E protein RseA, N-terminal domain ISX50_04550 PF08281 Sigma-70, region 4 ISX50_04550 PF04542 Sigma-70 region 2 ISX50_04555 PF00890 FAD binding domain ISX50_04555 PF02910 Fumarate reductase flavoprotein C-term ISX50_04565 PF03937 Flavinator of succinate dehydrogenase ISX50_04585 PF01494 FAD binding domain ISX50_04590 PF01494 FAD binding domain ISX50_04595 PF03695 Uncharacterised protein family (UPF0149) ISX50_04600 PF05164 Cell division protein ZapA ISX50_04610 PF01812 5-formyltetrahydrofolate cyclo-ligase family ISX50_04615 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ISX50_04620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISX50_04620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISX50_04620 PF01842 ACT domain ISX50_04625 PF13006 Insertion element 4 transposase N-terminal ISX50_04625 PF01609 Transposase DDE domain ISX50_04635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_04635 PF03466 LysR substrate binding domain ISX50_04640 PF01810 LysE type translocator ISX50_04645 PF00924 Mechanosensitive ion channel ISX50_04645 PF05552 Conserved TM helix ISX50_04650 PF01116 Fructose-bisphosphate aldolase class-II ISX50_04655 PF00162 Phosphoglycerate kinase ISX50_04660 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ISX50_04660 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ISX50_04665 PF00456 Transketolase, thiamine diphosphate binding domain ISX50_04665 PF02780 Transketolase, C-terminal domain ISX50_04665 PF02779 Transketolase, pyrimidine binding domain ISX50_04670 PF02772 S-adenosylmethionine synthetase, central domain ISX50_04670 PF00438 S-adenosylmethionine synthetase, N-terminal domain ISX50_04670 PF02773 S-adenosylmethionine synthetase, C-terminal domain ISX50_04680 PF10263 SprT-like family ISX50_04680 PF17283 SprT-like zinc ribbon domain ISX50_04685 PF04231 Endonuclease I ISX50_04695 PF04452 RNA methyltransferase ISX50_04700 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ISX50_04700 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ISX50_04705 PF02622 Uncharacterized ACR, COG1678 ISX50_04710 PF03652 Holliday junction resolvase ISX50_04720 PF00437 Type II/IV secretion system protein ISX50_04725 PF00437 Type II/IV secretion system protein ISX50_04730 PF01168 Alanine racemase, N-terminal domain ISX50_04735 PF03807 NADP oxidoreductase coenzyme F420-dependent ISX50_04735 PF14748 Pyrroline-5-carboxylate reductase dimerisation ISX50_04740 PF02325 YGGT family ISX50_04745 PF02594 Uncharacterised ACR, YggU family COG1872 ISX50_04755 PF01725 Ham1 family ISX50_04760 PF06969 HemN C-terminal domain ISX50_04760 PF04055 Radical SAM superfamily ISX50_04765 PF04960 Glutaminase ISX50_04770 PF02390 Putative methyltransferase ISX50_04775 PF00633 Helix-hairpin-helix motif ISX50_04775 PF00730 HhH-GPD superfamily base excision DNA repair protein ISX50_04775 PF14815 NUDIX domain ISX50_04780 PF04362 Bacterial Fe(2+) trafficking ISX50_04785 PF01464 Transglycosylase SLT domain ISX50_04785 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ISX50_04825 PF00672 HAMP domain ISX50_04825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_04825 PF17200 Single Cache domain 2 ISX50_04925 PF00072 Response regulator receiver domain ISX50_04945 PF03739 Lipopolysaccharide export system permease LptF/LptG ISX50_04950 PF03739 Lipopolysaccharide export system permease LptF/LptG ISX50_04955 PF00883 Cytosol aminopeptidase family, catalytic domain ISX50_04955 PF02789 Cytosol aminopeptidase family, N-terminal domain ISX50_04960 PF04364 DNA polymerase III chi subunit, HolC ISX50_04965 PF10458 Valyl tRNA synthetase tRNA binding arm ISX50_04965 PF00133 tRNA synthetases class I (I, L, M and V) ISX50_04965 PF08264 Anticodon-binding domain of tRNA ISX50_04975 PF00583 Acetyltransferase (GNAT) family ISX50_04985 PF06877 Regulator of ribonuclease activity B ISX50_04995 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ISX50_04995 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ISX50_05000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ISX50_05000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ISX50_05005 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ISX50_05005 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ISX50_05010 PF01042 Endoribonuclease L-PSP ISX50_05015 PF01553 Acyltransferase ISX50_05020 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ISX50_05025 PF01722 BolA-like protein ISX50_05035 PF05494 MlaC protein ISX50_05040 PF02470 MlaD protein ISX50_05045 PF02405 Permease MlaE ISX50_05050 PF00005 ABC transporter ISX50_05055 PF01699 Sodium/calcium exchanger protein ISX50_05060 PF00571 CBS domain ISX50_05060 PF01380 SIS domain ISX50_05075 PF03968 OstA-like protein ISX50_05080 PF00005 ABC transporter ISX50_05080 PF12399 Branched-chain amino acid ATP-binding cassette transporter ISX50_05085 PF00309 Sigma-54 factor, Activator interacting domain (AID) ISX50_05085 PF04963 Sigma-54 factor, core binding domain ISX50_05085 PF04552 Sigma-54, DNA binding domain ISX50_05090 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ISX50_05095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISX50_05100 PF03668 P-loop ATPase protein family ISX50_05105 PF00381 PTS HPr component phosphorylation site ISX50_05110 PF03448 MgtE intracellular N domain ISX50_05110 PF00571 CBS domain ISX50_05110 PF01769 Divalent cation transporter ISX50_05115 PF01523 Putative modulator of DNA gyrase ISX50_05120 PF04751 Protein of unknown function (DUF615) ISX50_05125 PF00005 ABC transporter ISX50_05130 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_05140 PF02441 Flavoprotein ISX50_05145 PF01225 Mur ligase family, catalytic domain ISX50_05145 PF02875 Mur ligase family, glutamate ligase domain ISX50_05145 PF08245 Mur ligase middle domain ISX50_05150 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ISX50_05155 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like ISX50_05160 PF04357 TamB, inner membrane protein subunit of TAM complex ISX50_05165 PF01103 Surface antigen ISX50_05165 PF07244 Surface antigen variable number repeat ISX50_05165 PF17243 POTRA domain TamA domain 1 ISX50_05170 PF01625 Peptide methionine sulfoxide reductase ISX50_05175 PF06526 Protein of unknown function (DUF1107) ISX50_05180 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ISX50_05185 PF10795 Protein of unknown function (DUF2607) ISX50_05195 PF00005 ABC transporter ISX50_05220 PF03600 Citrate transporter ISX50_05220 PF02080 TrkA-C domain ISX50_05225 PF00009 Elongation factor Tu GTP binding domain ISX50_05230 PF01507 Phosphoadenosine phosphosulfate reductase family ISX50_05235 PF00149 Calcineurin-like phosphoesterase ISX50_05235 PF02872 5'-nucleotidase, C-terminal domain ISX50_05280 PF13673 Acetyltransferase (GNAT) domain ISX50_05290 PF04225 Opacity-associated protein A LysM-like domain ISX50_05290 PF08525 Opacity-associated protein A N-terminal motif ISX50_05295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISX50_05295 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ISX50_05310 PF01196 Ribosomal protein L17 ISX50_05315 PF01000 RNA polymerase Rpb3/RpoA insert domain ISX50_05315 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ISX50_05315 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ISX50_05320 PF01479 S4 domain ISX50_05320 PF00163 Ribosomal protein S4/S9 N-terminal domain ISX50_05325 PF00411 Ribosomal protein S11 ISX50_05330 PF00416 Ribosomal protein S13/S18 ISX50_05335 PF00444 Ribosomal protein L36 ISX50_05340 PF00344 SecY translocase ISX50_05345 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ISX50_05350 PF00327 Ribosomal protein L30p/L7e ISX50_05355 PF00333 Ribosomal protein S5, N-terminal domain ISX50_05355 PF03719 Ribosomal protein S5, C-terminal domain ISX50_05360 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ISX50_05365 PF00347 Ribosomal protein L6 ISX50_05370 PF00410 Ribosomal protein S8 ISX50_05375 PF00253 Ribosomal protein S14p/S29e ISX50_05380 PF00673 ribosomal L5P family C-terminus ISX50_05380 PF00281 Ribosomal protein L5 ISX50_05385 PF00467 KOW motif ISX50_05385 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ISX50_05390 PF00238 Ribosomal protein L14p/L23e ISX50_05395 PF00366 Ribosomal protein S17 ISX50_05400 PF00831 Ribosomal L29 protein ISX50_05405 PF00252 Ribosomal protein L16p/L10e ISX50_05410 PF00189 Ribosomal protein S3, C-terminal domain ISX50_05410 PF07650 KH domain ISX50_05415 PF00237 Ribosomal protein L22p/L17e ISX50_05420 PF00203 Ribosomal protein S19 ISX50_05425 PF00181 Ribosomal Proteins L2, RNA binding domain ISX50_05425 PF03947 Ribosomal Proteins L2, C-terminal domain ISX50_05430 PF00276 Ribosomal protein L23 ISX50_05435 PF00573 Ribosomal protein L4/L1 family ISX50_05440 PF00297 Ribosomal protein L3 ISX50_05445 PF00338 Ribosomal protein S10p/S20e ISX50_05450 PF03144 Elongation factor Tu domain 2 ISX50_05450 PF03143 Elongation factor Tu C-terminal domain ISX50_05450 PF00009 Elongation factor Tu GTP binding domain ISX50_05455 PF14492 Elongation Factor G, domain II ISX50_05455 PF00679 Elongation factor G C-terminus ISX50_05455 PF03144 Elongation factor Tu domain 2 ISX50_05455 PF00009 Elongation factor Tu GTP binding domain ISX50_05455 PF03764 Elongation factor G, domain IV ISX50_05460 PF00177 Ribosomal protein S7p/S5e ISX50_05465 PF00164 Ribosomal protein S12/S23 ISX50_05475 PF02635 DsrE/DsrF-like family ISX50_05480 PF02635 DsrE/DsrF-like family ISX50_05485 PF13309 HTH domain ISX50_05485 PF08348 YheO-like PAS domain ISX50_05490 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ISX50_05490 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISX50_05500 PF04102 SlyX ISX50_05505 PF01112 Asparaginase ISX50_05510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISX50_05520 PF02254 TrkA-N domain ISX50_05520 PF00999 Sodium/hydrogen exchanger family ISX50_05525 PF02525 Flavodoxin-like fold ISX50_05530 PF00005 ABC transporter ISX50_05530 PF12848 ABC transporter ISX50_05540 PF00561 alpha/beta hydrolase fold ISX50_05545 PF06794 Uncharacterised protein family (UPF0270) ISX50_05550 PF00485 Phosphoribulokinase / Uridine kinase family ISX50_05555 PF00027 Cyclic nucleotide-binding domain ISX50_05555 PF13545 Crp-like helix-turn-helix domain ISX50_05565 PF00171 Aldehyde dehydrogenase family ISX50_05570 PF04958 Arginine N-succinyltransferase beta subunit ISX50_05575 PF00202 Aminotransferase class-III ISX50_05580 PF00117 Glutamine amidotransferase class-I ISX50_05585 PF04231 Endonuclease I ISX50_05605 PF00579 tRNA synthetases class I (W and Y) ISX50_05610 PF13419 Haloacid dehalogenase-like hydrolase ISX50_05615 PF00834 Ribulose-phosphate 3 epimerase family ISX50_05620 PF02086 D12 class N6 adenine-specific DNA methyltransferase ISX50_05630 PF01761 3-dehydroquinate synthase ISX50_05635 PF01202 Shikimate kinase ISX50_05640 PF00263 Bacterial type II and III secretion system protein ISX50_05640 PF03958 Bacterial type II/III secretion system short domain ISX50_05640 PF11741 AMIN domain ISX50_05640 PF07660 Secretin and TonB N terminus short domain ISX50_05665 PF17092 Penicillin-binding protein OB-like domain ISX50_05665 PF00912 Transglycosylase ISX50_05665 PF00905 Penicillin binding protein transpeptidase domain ISX50_05670 PF03466 LysR substrate binding domain ISX50_05670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_05675 PF00462 Glutaredoxin ISX50_05675 PF08534 Redoxin ISX50_05680 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_05680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISX50_05685 PF01042 Endoribonuclease L-PSP ISX50_05695 PF00583 Acetyltransferase (GNAT) family ISX50_05695 PF14698 Argininosuccinate lyase C-terminal ISX50_05695 PF00206 Lyase ISX50_05700 PF00764 Arginosuccinate synthase ISX50_05705 PF00696 Amino acid kinase family ISX50_05710 PF01118 Semialdehyde dehydrogenase, NAD binding domain ISX50_05710 PF02774 Semialdehyde dehydrogenase, dimerisation domain ISX50_05715 PF07687 Peptidase dimerisation domain ISX50_05715 PF01546 Peptidase family M20/M25/M40 ISX50_05720 PF00311 Phosphoenolpyruvate carboxylase ISX50_05730 PF02219 Methylenetetrahydrofolate reductase ISX50_05735 PF00696 Amino acid kinase family ISX50_05735 PF00742 Homoserine dehydrogenase ISX50_05735 PF03447 Homoserine dehydrogenase, NAD binding domain ISX50_05740 PF01053 Cys/Met metabolism PLP-dependent enzyme ISX50_05745 PF01340 Met Apo-repressor, MetJ ISX50_05750 PF00390 Malic enzyme, N-terminal domain ISX50_05750 PF03949 Malic enzyme, NAD binding domain ISX50_05755 PF01197 Ribosomal protein L31 ISX50_05760 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ISX50_05760 PF17764 3′ DNA-binding domain (3′BD) ISX50_05760 PF00270 DEAD/DEAH box helicase ISX50_05760 PF18074 Primosomal protein N C-terminal domain ISX50_05760 PF00271 Helicase conserved C-terminal domain ISX50_05765 PF00356 Bacterial regulatory proteins, lacI family ISX50_05775 PF00227 Proteasome subunit ISX50_05780 PF00004 ATPase family associated with various cellular activities (AAA) ISX50_05780 PF07724 AAA domain (Cdc48 subfamily) ISX50_05785 PF01040 UbiA prenyltransferase family ISX50_05790 PF03737 Aldolase/RraA ISX50_05795 PF06005 Cell division protein ZapB ISX50_05800 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ISX50_05815 PF05656 Protein of unknown function (DUF805) ISX50_05825 PF00121 Triosephosphate isomerase ISX50_05830 PF00365 Phosphofructokinase ISX50_05835 PF01545 Cation efflux family ISX50_05835 PF16916 Dimerisation domain of Zinc Transporter ISX50_05845 PF00072 Response regulator receiver domain ISX50_05845 PF00486 Transcriptional regulatory protein, C terminal ISX50_05850 PF16527 Two-component sensor protein CpxA, periplasmic domain ISX50_05850 PF00672 HAMP domain ISX50_05850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_05850 PF00512 His Kinase A (phospho-acceptor) domain ISX50_05855 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ISX50_05855 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ISX50_05860 PF00588 SpoU rRNA Methylase family ISX50_05865 PF04186 FxsA cytoplasmic membrane protein ISX50_05870 PF10415 Fumarase C C-terminus ISX50_05870 PF00206 Lyase ISX50_05875 PF03605 Anaerobic c4-dicarboxylate membrane transporter ISX50_05880 PF03606 C4-dicarboxylate anaerobic carrier ISX50_05890 PF00696 Amino acid kinase family ISX50_05895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ISX50_05895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ISX50_05900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ISX50_05900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ISX50_05905 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ISX50_05905 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ISX50_05910 PF01316 Arginine repressor, DNA binding domain ISX50_05910 PF02863 Arginine repressor, C-terminal domain ISX50_05915 PF02683 Cytochrome C biogenesis protein transmembrane region ISX50_05915 PF11412 Disulphide bond corrector protein DsbC ISX50_05920 PF00196 Bacterial regulatory proteins, luxR family ISX50_05920 PF00072 Response regulator receiver domain ISX50_05925 PF03471 Transporter associated domain ISX50_05925 PF00999 Sodium/hydrogen exchanger family ISX50_05925 PF02080 TrkA-C domain ISX50_05935 PF00474 Sodium:solute symporter family ISX50_05945 PF00206 Lyase ISX50_05945 PF10415 Fumarase C C-terminus ISX50_05950 PF00672 HAMP domain ISX50_05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_05950 PF00512 His Kinase A (phospho-acceptor) domain ISX50_05950 PF01627 Hpt domain ISX50_05950 PF00072 Response regulator receiver domain ISX50_05955 PF12832 MFS_1 like family ISX50_05970 PF13193 AMP-binding enzyme C-terminal domain ISX50_05970 PF16177 Acetyl-coenzyme A synthetase N-terminus ISX50_05970 PF00501 AMP-binding enzyme ISX50_05975 PF01220 Dehydroquinase class II ISX50_05980 PF00364 Biotin-requiring enzyme ISX50_05985 PF02785 Biotin carboxylase C-terminal domain ISX50_05985 PF00289 Biotin carboxylase, N-terminal domain ISX50_05985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ISX50_05995 PF01207 Dihydrouridine synthase (Dus) ISX50_06000 PF02954 Bacterial regulatory protein, Fis family ISX50_06005 PF13411 MerR HTH family regulatory protein ISX50_06010 PF01808 AICARFT/IMPCHase bienzyme ISX50_06010 PF02142 MGS-like domain ISX50_06015 PF02843 Phosphoribosylglycinamide synthetase, C domain ISX50_06015 PF02844 Phosphoribosylglycinamide synthetase, N domain ISX50_06015 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ISX50_06025 PF00216 Bacterial DNA-binding protein ISX50_06030 PF01595 Cyclin M transmembrane N-terminal domain ISX50_06030 PF00571 CBS domain ISX50_06035 PF04222 Protein of unknown function (DUF416) ISX50_06045 PF03167 Uracil DNA glycosylase superfamily ISX50_06050 PF01208 Uroporphyrinogen decarboxylase (URO-D) ISX50_06055 PF00293 NUDIX domain ISX50_06055 PF09297 NADH pyrophosphatase zinc ribbon domain ISX50_06060 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ISX50_06065 PF04997 RNA polymerase Rpb1, domain 1 ISX50_06065 PF04998 RNA polymerase Rpb1, domain 5 ISX50_06065 PF05000 RNA polymerase Rpb1, domain 4 ISX50_06065 PF04983 RNA polymerase Rpb1, domain 3 ISX50_06065 PF00623 RNA polymerase Rpb1, domain 2 ISX50_06070 PF10385 RNA polymerase beta subunit external 1 domain ISX50_06070 PF04563 RNA polymerase beta subunit ISX50_06070 PF04561 RNA polymerase Rpb2, domain 2 ISX50_06070 PF04565 RNA polymerase Rpb2, domain 3 ISX50_06070 PF00562 RNA polymerase Rpb2, domain 6 ISX50_06070 PF04560 RNA polymerase Rpb2, domain 7 ISX50_06075 PF00542 Ribosomal protein L7/L12 C-terminal domain ISX50_06075 PF16320 Ribosomal protein L7/L12 dimerisation domain ISX50_06080 PF00466 Ribosomal protein L10 ISX50_06085 PF00687 Ribosomal protein L1p/L10e family ISX50_06090 PF03946 Ribosomal protein L11, N-terminal domain ISX50_06090 PF00298 Ribosomal protein L11, RNA binding domain ISX50_06095 PF02357 Transcription termination factor nusG ISX50_06095 PF00467 KOW motif ISX50_06100 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ISX50_06105 PF00009 Elongation factor Tu GTP binding domain ISX50_06105 PF03144 Elongation factor Tu domain 2 ISX50_06105 PF03143 Elongation factor Tu C-terminal domain ISX50_06130 PF00485 Phosphoribulokinase / Uridine kinase family ISX50_06135 PF03099 Biotin/lipoate A/B protein ligase family ISX50_06135 PF02237 Biotin protein ligase C terminal domain ISX50_06135 PF08279 HTH domain ISX50_06140 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ISX50_06140 PF01565 FAD binding domain ISX50_06150 PF13091 PLD-like domain ISX50_06255 PF01177 Asp/Glu/Hydantoin racemase ISX50_06265 PF00593 TonB dependent receptor ISX50_06265 PF07715 TonB-dependent Receptor Plug Domain ISX50_06270 PF05958 tRNA (Uracil-5-)-methyltransferase ISX50_06290 PF12008 Type I restriction and modification enzyme - subunit R C terminal ISX50_06290 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ISX50_06290 PF18766 SWI2/SNF2 ATPase ISX50_06300 PF01420 Type I restriction modification DNA specificity domain ISX50_06305 PF12161 HsdM N-terminal domain ISX50_06305 PF02384 N-6 DNA Methylase ISX50_06330 PF04002 RadC-like JAB domain ISX50_06380 PF00440 Bacterial regulatory proteins, tetR family ISX50_06385 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_06385 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISX50_06390 PF01554 MatE ISX50_06395 PF04072 Leucine carboxyl methyltransferase ISX50_06400 PF00717 Peptidase S24-like ISX50_06400 PF01726 LexA DNA binding domain ISX50_06405 PF01219 Prokaryotic diacylglycerol kinase ISX50_06410 PF01553 Acyltransferase ISX50_06415 PF13006 Insertion element 4 transposase N-terminal ISX50_06415 PF01609 Transposase DDE domain ISX50_06420 PF01040 UbiA prenyltransferase family ISX50_06425 PF04345 Chorismate lyase ISX50_06430 PF03748 Flagellar basal body-associated protein FliL ISX50_06435 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ISX50_06435 PF01694 Rhomboid family ISX50_06440 PF00581 Rhodanese-like domain ISX50_06445 PF04545 Sigma-70, region 4 ISX50_06445 PF00140 Sigma-70 factor, region 1.2 ISX50_06445 PF04542 Sigma-70 region 2 ISX50_06450 PF18075 FtsX extracellular domain ISX50_06455 PF00005 ABC transporter ISX50_06460 PF02881 SRP54-type protein, helical bundle domain ISX50_06460 PF00448 SRP54-type protein, GTPase domain ISX50_06475 PF01914 MarC family integral membrane protein ISX50_06515 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ISX50_06515 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ISX50_06520 PF01022 Bacterial regulatory protein, arsR family ISX50_06525 PF08668 HDOD domain ISX50_06525 PF00563 EAL domain ISX50_06530 PF01810 LysE type translocator ISX50_06535 PF12146 Serine aminopeptidase, S33 ISX50_06555 PF03942 DTW domain ISX50_06560 PF00563 EAL domain ISX50_06560 PF08495 FIST N domain ISX50_06560 PF10442 FIST C domain ISX50_06560 PF00990 Diguanylate cyclase, GGDEF domain ISX50_06565 PF00563 EAL domain ISX50_06565 PF08495 FIST N domain ISX50_06565 PF10442 FIST C domain ISX50_06565 PF00990 Diguanylate cyclase, GGDEF domain ISX50_06570 PF13419 Haloacid dehalogenase-like hydrolase ISX50_06575 PF02899 Phage integrase, N-terminal SAM-like domain ISX50_06575 PF00589 Phage integrase family ISX50_06585 PF01678 Diaminopimelate epimerase ISX50_06590 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ISX50_06590 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ISX50_06600 PF01491 Frataxin-like domain ISX50_06605 PF12633 Adenylate cyclase NT domain ISX50_06605 PF01295 Adenylate cyclase, class-I ISX50_06610 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ISX50_06610 PF03900 Porphobilinogen deaminase, C-terminal domain ISX50_06615 PF02602 Uroporphyrinogen-III synthase HemD ISX50_06620 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ISX50_06625 PF07219 HemY protein N-terminus ISX50_06675 PF00175 Oxidoreductase NAD-binding domain ISX50_06680 PF00175 Oxidoreductase NAD-binding domain ISX50_06680 PF00111 2Fe-2S iron-sulfur cluster binding domain ISX50_06685 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ISX50_06695 PF07497 Rho termination factor, RNA-binding domain ISX50_06695 PF07498 Rho termination factor, N-terminal domain ISX50_06695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISX50_06700 PF00085 Thioredoxin ISX50_06705 PF00270 DEAD/DEAH box helicase ISX50_06705 PF00271 Helicase conserved C-terminal domain ISX50_06710 PF02541 Ppx/GppA phosphatase family ISX50_06715 PF02592 Putative vitamin uptake transporter ISX50_06725 PF00270 DEAD/DEAH box helicase ISX50_06725 PF00570 HRDC domain ISX50_06725 PF16124 RecQ zinc-binding ISX50_06725 PF09382 RQC domain ISX50_06725 PF00271 Helicase conserved C-terminal domain ISX50_06730 PF00892 EamA-like transporter family ISX50_06735 PF02311 AraC-like ligand binding domain ISX50_06735 PF12833 Helix-turn-helix domain ISX50_06740 PF01810 LysE type translocator ISX50_06750 PF08534 Redoxin ISX50_06755 PF13361 UvrD-like helicase C-terminal domain ISX50_06755 PF00580 UvrD/REP helicase N-terminal domain ISX50_06765 PF05114 Protein of unknown function (DUF692) ISX50_06785 PF07690 Major Facilitator Superfamily ISX50_06790 PF03466 LysR substrate binding domain ISX50_06790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_06795 PF01321 Creatinase/Prolidase N-terminal domain ISX50_06795 PF00557 Metallopeptidase family M24 ISX50_06795 PF01321 Creatinase/Prolidase N-terminal domain ISX50_06795 PF00557 Metallopeptidase family M24 ISX50_06800 PF06968 Biotin and Thiamin Synthesis associated domain ISX50_06800 PF04055 Radical SAM superfamily ISX50_06805 PF05690 Thiazole biosynthesis protein ThiG ISX50_06815 PF00899 ThiF family ISX50_06820 PF02581 Thiamine monophosphate synthase ISX50_06825 PF13667 ThiC-associated domain ISX50_06825 PF01964 Radical SAM ThiC family ISX50_06830 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ISX50_06835 PF07732 Multicopper oxidase ISX50_06835 PF00394 Multicopper oxidase ISX50_06835 PF07731 Multicopper oxidase ISX50_06880 PF12724 Flavodoxin domain ISX50_06885 PF02386 Cation transport protein ISX50_06890 PF01205 Uncharacterized protein family UPF0029 ISX50_06890 PF09186 Domain of unknown function (DUF1949) ISX50_06895 PF00378 Enoyl-CoA hydratase/isomerase ISX50_06895 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ISX50_06895 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ISX50_06900 PF00108 Thiolase, N-terminal domain ISX50_06900 PF02803 Thiolase, C-terminal domain ISX50_06905 PF08240 Alcohol dehydrogenase GroES-like domain ISX50_06905 PF00107 Zinc-binding dehydrogenase ISX50_06910 PF03466 LysR substrate binding domain ISX50_06910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_06920 PF01206 Sulfurtransferase TusA ISX50_06930 PF01169 Uncharacterized protein family UPF0016 ISX50_06935 PF02091 Glycyl-tRNA synthetase alpha subunit ISX50_06940 PF02092 Glycyl-tRNA synthetase beta subunit ISX50_06940 PF05746 DALR anticodon binding domain ISX50_06945 PF00128 Alpha amylase, catalytic domain ISX50_06950 PF00155 Aminotransferase class I and II ISX50_06955 PF00011 Hsp20/alpha crystallin family ISX50_06960 PF00986 DNA gyrase B subunit, carboxyl terminus ISX50_06960 PF00204 DNA gyrase B ISX50_06960 PF01751 Toprim domain ISX50_06960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_06960 PF18053 DNA gyrase B subunit insert domain ISX50_06965 PF02463 RecF/RecN/SMC N terminal domain ISX50_06970 PF02767 DNA polymerase III beta subunit, central domain ISX50_06970 PF00712 DNA polymerase III beta subunit, N-terminal domain ISX50_06970 PF02768 DNA polymerase III beta subunit, C-terminal domain ISX50_06975 PF00308 Bacterial dnaA protein ISX50_06975 PF11638 DnaA N-terminal domain ISX50_06975 PF08299 Bacterial dnaA protein helix-turn-helix ISX50_06980 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISX50_06985 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_06990 PF00005 ABC transporter ISX50_06995 PF00468 Ribosomal protein L34 ISX50_07000 PF00825 Ribonuclease P ISX50_07005 PF01809 Putative membrane protein insertion efficiency factor ISX50_07010 PF02096 60Kd inner membrane protein ISX50_07010 PF14849 YidC periplasmic domain ISX50_07015 PF12631 MnmE helical domain ISX50_07015 PF01926 50S ribosome-binding GTPase ISX50_07015 PF10396 GTP-binding protein TrmE N-terminus ISX50_07020 PF00258 Flavodoxin ISX50_07025 PF01134 Glucose inhibited division protein A ISX50_07025 PF13932 GidA associated domain ISX50_07030 PF02527 rRNA small subunit methyltransferase G ISX50_07035 PF13614 AAA domain ISX50_07040 PF02195 ParB-like nuclease domain ISX50_07040 PF17762 HTH domain found in ParB protein ISX50_07045 PF03899 ATP synthase I chain ISX50_07050 PF00119 ATP synthase A chain ISX50_07055 PF00137 ATP synthase subunit C ISX50_07060 PF00430 ATP synthase B/B' CF(0) ISX50_07065 PF00213 ATP synthase delta (OSCP) subunit ISX50_07070 PF00306 ATP synthase alpha/beta chain, C terminal domain ISX50_07070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISX50_07070 PF02874 ATP synthase alpha/beta family, beta-barrel domain ISX50_07075 PF00231 ATP synthase ISX50_07080 PF02874 ATP synthase alpha/beta family, beta-barrel domain ISX50_07080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISX50_07085 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ISX50_07085 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ISX50_07090 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_07090 PF12804 MobA-like NTP transferase domain ISX50_07095 PF00990 Diguanylate cyclase, GGDEF domain ISX50_07100 PF07690 Major Facilitator Superfamily ISX50_07105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_07105 PF03466 LysR substrate binding domain ISX50_07110 PF00291 Pyridoxal-phosphate dependent enzyme ISX50_07110 PF00585 C-terminal regulatory domain of Threonine dehydratase ISX50_07115 PF00920 Dehydratase family ISX50_07120 PF01063 Amino-transferase class IV ISX50_07130 PF00205 Thiamine pyrophosphate enzyme, central domain ISX50_07130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISX50_07130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISX50_07135 PF13335 Magnesium chelatase, subunit ChlI C-terminal ISX50_07135 PF01078 Magnesium chelatase, subunit ChlI ISX50_07145 PF01323 DSBA-like thioredoxin domain ISX50_07150 PF01636 Phosphotransferase enzyme family ISX50_07155 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ISX50_07155 PF12801 4Fe-4S binding domain ISX50_07155 PF13746 4Fe-4S dicluster domain ISX50_07160 PF06288 Protein of unknown function (DUF1040) ISX50_07170 PF07070 SpoOM protein ISX50_07175 PF03006 Haemolysin-III related ISX50_07185 PF02386 Cation transport protein ISX50_07190 PF02254 TrkA-N domain ISX50_07190 PF02080 TrkA-C domain ISX50_07195 PF01029 NusB family ISX50_07195 PF01189 16S rRNA methyltransferase RsmB/F ISX50_07200 PF00551 Formyl transferase ISX50_07200 PF02911 Formyl transferase, C-terminal domain ISX50_07205 PF01327 Polypeptide deformylase ISX50_07215 PF02481 DNA recombination-mediator protein A ISX50_07215 PF17782 DprA winged helix domain ISX50_07220 PF04361 Protein of unknown function (DUF494) ISX50_07225 PF01396 Topoisomerase DNA binding C4 zinc finger ISX50_07230 PF02222 ATP-grasp domain ISX50_07230 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ISX50_07235 PF00731 AIR carboxylase ISX50_07240 PF01300 Telomere recombination ISX50_07245 PF01218 Coproporphyrinogen III oxidase ISX50_07250 PF08501 Shikimate dehydrogenase substrate binding domain ISX50_07250 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ISX50_07250 PF01488 Shikimate / quinate 5-dehydrogenase ISX50_07255 PF07369 Protein of unknown function (DUF1488) ISX50_07260 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_07305 PF03466 LysR substrate binding domain ISX50_07305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_07310 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ISX50_07310 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ISX50_07315 PF04380 Membrane fusogenic activity ISX50_07320 PF00873 AcrB/AcrD/AcrF family ISX50_07325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISX50_07330 PF00440 Bacterial regulatory proteins, tetR family ISX50_07335 PF13361 UvrD-like helicase C-terminal domain ISX50_07335 PF00580 UvrD/REP helicase N-terminal domain ISX50_07340 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ISX50_07370 PF00005 ABC transporter ISX50_07370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISX50_07375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISX50_07380 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_07385 PF12911 N-terminal TM domain of oligopeptide transport permease C ISX50_07385 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_07425 PF00069 Protein kinase domain ISX50_07425 PF03793 PASTA domain ISX50_07430 PF03116 NQR2, RnfD, RnfE family ISX50_07440 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISX50_07440 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_07445 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ISX50_07450 PF01432 Peptidase family M3 ISX50_07455 PF01037 Lrp/AsnC ligand binding domain ISX50_07460 PF08448 PAS fold ISX50_07460 PF00563 EAL domain ISX50_07460 PF00990 Diguanylate cyclase, GGDEF domain ISX50_07465 PF04445 Putative SAM-dependent methyltransferase ISX50_07475 PF00892 EamA-like transporter family ISX50_07480 PF00582 Universal stress protein family ISX50_07485 PF00210 Ferritin-like domain ISX50_07490 PF10625 Universal stress protein B (UspB) ISX50_07505 PF02646 RmuC family ISX50_07510 PF01209 ubiE/COQ5 methyltransferase family ISX50_07515 PF02036 SCP-2 sterol transfer family ISX50_07520 PF03109 ABC1 family ISX50_07525 PF02416 mttA/Hcf106 family ISX50_07530 PF02416 mttA/Hcf106 family ISX50_07535 PF00902 Sec-independent protein translocase protein (TatC) ISX50_07540 PF01026 TatD related DNase ISX50_07545 PF00490 Delta-aminolevulinic acid dehydratase ISX50_07555 PF01612 3'-5' exonuclease ISX50_07555 PF01367 5'-3' exonuclease, C-terminal SAM fold ISX50_07555 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ISX50_07555 PF00476 DNA polymerase family A ISX50_07565 PF01926 50S ribosome-binding GTPase ISX50_07570 PF00034 Cytochrome c ISX50_07580 PF04220 Der GTPase activator (YihI) ISX50_07585 PF10675 Protein of unknown function (DUF2489) ISX50_07590 PF04055 Radical SAM superfamily ISX50_07590 PF06969 HemN C-terminal domain ISX50_07595 PF00563 EAL domain ISX50_07595 PF00990 Diguanylate cyclase, GGDEF domain ISX50_07595 PF03707 Bacterial signalling protein N terminal repeat ISX50_07600 PF00072 Response regulator receiver domain ISX50_07600 PF00158 Sigma-54 interaction domain ISX50_07600 PF02954 Bacterial regulatory protein, Fis family ISX50_07605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_07605 PF00512 His Kinase A (phospho-acceptor) domain ISX50_07605 PF00989 PAS fold ISX50_07615 PF00120 Glutamine synthetase, catalytic domain ISX50_07615 PF03951 Glutamine synthetase, beta-Grasp domain ISX50_07620 PF00009 Elongation factor Tu GTP binding domain ISX50_07620 PF03144 Elongation factor Tu domain 2 ISX50_07620 PF00679 Elongation factor G C-terminus ISX50_07635 PF03631 Virulence factor BrkB ISX50_07640 PF02580 D-Tyr-tRNA(Tyr) deacylase ISX50_07645 PF09500 Putative thioesterase (yiiD_Cterm) ISX50_07645 PF00583 Acetyltransferase (GNAT) family ISX50_07655 PF01293 Phosphoenolpyruvate carboxykinase ISX50_07660 PF01430 Hsp33 protein ISX50_07665 PF01479 S4 domain ISX50_07670 PF11356 Type II secretion system protein C ISX50_07675 PF03958 Bacterial type II/III secretion system short domain ISX50_07675 PF00263 Bacterial type II and III secretion system protein ISX50_07680 PF00437 Type II/IV secretion system protein ISX50_07685 PF00482 Type II secretion system (T2SS), protein F ISX50_07690 PF07963 Prokaryotic N-terminal methylation motif ISX50_07690 PF08334 Type II secretion system (T2SS), protein G ISX50_07695 PF12019 Type II transport protein GspH ISX50_07700 PF07963 Prokaryotic N-terminal methylation motif ISX50_07700 PF02501 Type II secretion system (T2SS), protein I ISX50_07705 PF07963 Prokaryotic N-terminal methylation motif ISX50_07705 PF11612 Type II secretion system (T2SS), protein J ISX50_07710 PF03934 Type II secretion system (T2SS), protein K ISX50_07715 PF12693 GspL periplasmic domain ISX50_07715 PF05134 Type II secretion system (T2SS), protein L ISX50_07720 PF04612 Type II secretion system (T2SS), protein M ISX50_07725 PF01203 Type II secretion system (T2SS), protein N ISX50_07730 PF00459 Inositol monophosphatase family ISX50_07735 PF00293 NUDIX domain ISX50_07740 PF01106 NifU-like domain ISX50_07740 PF01521 Iron-sulphur cluster biosynthesis ISX50_07745 PF00156 Phosphoribosyl transferase domain ISX50_07750 PF00561 alpha/beta hydrolase fold ISX50_07760 PF00575 S1 RNA binding domain ISX50_07760 PF16921 Tex protein YqgF-like domain ISX50_07760 PF17674 HHH domain ISX50_07760 PF09371 Tex-like protein N-terminal domain ISX50_07765 PF01272 Transcription elongation factor, GreA/GreB, C-term ISX50_07765 PF03449 Transcription elongation factor, N-terminal ISX50_07770 PF00072 Response regulator receiver domain ISX50_07770 PF00486 Transcriptional regulatory protein, C terminal ISX50_07775 PF00672 HAMP domain ISX50_07775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_07775 PF00512 His Kinase A (phospho-acceptor) domain ISX50_07780 PF00270 DEAD/DEAH box helicase ISX50_07780 PF00271 Helicase conserved C-terminal domain ISX50_07780 PF17191 RecG wedge domain ISX50_07785 PF02824 TGS domain ISX50_07785 PF04607 Region found in RelA / SpoT proteins ISX50_07785 PF13291 ACT domain ISX50_07790 PF01192 RNA polymerase Rpb6 ISX50_07795 PF00625 Guanylate kinase ISX50_07800 PF00860 Permease family ISX50_07810 PF00313 'Cold-shock' DNA-binding domain ISX50_07815 PF08340 Domain of unknown function (DUF1732) ISX50_07815 PF03755 YicC-like family, N-terminal region ISX50_07820 PF01138 3' exoribonuclease family, domain 1 ISX50_07820 PF03725 3' exoribonuclease family, domain 2 ISX50_07825 PF00156 Phosphoribosyl transferase domain ISX50_07830 PF03279 Bacterial lipid A biosynthesis acyltransferase ISX50_07835 PF00440 Bacterial regulatory proteins, tetR family ISX50_07840 PF02441 Flavoprotein ISX50_07840 PF04127 DNA / pantothenate metabolism flavoprotein ISX50_07845 PF04002 RadC-like JAB domain ISX50_07850 PF00830 Ribosomal L28 family ISX50_07855 PF00471 Ribosomal protein L33 ISX50_07865 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ISX50_07865 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ISX50_07865 PF06827 Zinc finger found in FPG and IleRS ISX50_07870 PF05686 Glycosyl transferase family 90 ISX50_07875 PF01467 Cytidylyltransferase-like ISX50_07880 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ISX50_07885 PF00535 Glycosyl transferase family 2 ISX50_07890 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ISX50_07900 PF16363 GDP-mannose 4,6 dehydratase ISX50_07905 PF00483 Nucleotidyl transferase ISX50_07910 PF05523 WxcM-like, C-terminal ISX50_07930 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_07930 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ISX50_07935 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ISX50_07940 PF00535 Glycosyl transferase family 2 ISX50_07950 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_07950 PF12804 MobA-like NTP transferase domain ISX50_07955 PF13439 Glycosyltransferase Family 4 ISX50_07955 PF00534 Glycosyl transferases group 1 ISX50_07965 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ISX50_07970 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ISX50_07975 PF03279 Bacterial lipid A biosynthesis acyltransferase ISX50_07980 PF01370 NAD dependent epimerase/dehydratase family ISX50_07985 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ISX50_07985 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ISX50_07985 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ISX50_07990 PF00440 Bacterial regulatory proteins, tetR family ISX50_07990 PF08360 QacR-like protein, C-terminal region ISX50_07995 PF01551 Peptidase family M23 ISX50_08000 PF06426 Serine acetyltransferase, N-terminal ISX50_08000 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_08005 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ISX50_08005 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ISX50_08010 PF02556 Preprotein translocase subunit SecB ISX50_08015 PF00581 Rhodanese-like domain ISX50_08025 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF ISX50_08035 PF06082 Exopolysaccharide biosynthesis protein YbjH ISX50_08040 PF18412 Outer-membrane lipoprotein Wza C-terminal domain ISX50_08040 PF10531 SLBB domain ISX50_08040 PF02563 Polysaccharide biosynthesis/export protein ISX50_08045 PF01451 Low molecular weight phosphotyrosine protein phosphatase ISX50_08050 PF13614 AAA domain ISX50_08050 PF13807 G-rich domain on putative tyrosine kinase ISX50_08050 PF02706 Chain length determinant protein ISX50_08080 PF02350 UDP-N-acetylglucosamine 2-epimerase ISX50_08085 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ISX50_08085 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ISX50_08085 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ISX50_08090 PF02719 Polysaccharide biosynthesis protein ISX50_08095 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ISX50_08100 PF02350 UDP-N-acetylglucosamine 2-epimerase ISX50_08105 PF08666 SAF domain ISX50_08105 PF03102 NeuB family ISX50_08115 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_08115 PF00483 Nucleotidyl transferase ISX50_08120 PF02348 Cytidylyltransferase ISX50_08175 PF01370 NAD dependent epimerase/dehydratase family ISX50_08180 PF02397 Bacterial sugar transferase ISX50_08185 PF02719 Polysaccharide biosynthesis protein ISX50_08190 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ISX50_08190 PF01676 Metalloenzyme superfamily ISX50_08195 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ISX50_08195 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ISX50_08200 PF01554 MatE ISX50_08205 PF00166 Chaperonin 10 Kd subunit ISX50_08210 PF00118 TCP-1/cpn60 chaperonin family ISX50_08220 PF00990 Diguanylate cyclase, GGDEF domain ISX50_08225 PF02308 MgtC family ISX50_08230 PF04055 Radical SAM superfamily ISX50_08235 PF09285 Elongation factor P, C-terminal ISX50_08235 PF01132 Elongation factor P (EF-P) OB domain ISX50_08235 PF08207 Elongation factor P (EF-P) KOW-like domain ISX50_08240 PF02313 Fumarate reductase subunit D ISX50_08245 PF02300 Fumarate reductase subunit C ISX50_08250 PF13085 2Fe-2S iron-sulfur cluster binding domain ISX50_08250 PF13183 4Fe-4S dicluster domain ISX50_08255 PF00890 FAD binding domain ISX50_08255 PF02910 Fumarate reductase flavoprotein C-term ISX50_08260 PF00152 tRNA synthetases class II (D, K and N) ISX50_08270 PF03600 Citrate transporter ISX50_08270 PF02080 TrkA-C domain ISX50_08275 PF02666 Phosphatidylserine decarboxylase ISX50_08280 PF03193 RsgA GTPase ISX50_08285 PF00929 Exonuclease ISX50_08370 PF08331 Domain of unknown function (DUF1730) ISX50_08375 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ISX50_08380 PF01520 N-acetylmuramoyl-L-alanine amidase ISX50_08385 PF01119 DNA mismatch repair protein, C-terminal domain ISX50_08385 PF08676 MutL C terminal dimerisation domain ISX50_08395 PF17209 Hfq protein ISX50_08400 PF16360 GTP-binding GTPase Middle Region ISX50_08400 PF13167 GTP-binding GTPase N-terminal ISX50_08400 PF01926 50S ribosome-binding GTPase ISX50_08405 PF01145 SPFH domain / Band 7 family ISX50_08405 PF12221 Bacterial membrane protein N terminal ISX50_08410 PF01145 SPFH domain / Band 7 family ISX50_08420 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ISX50_08425 PF00709 Adenylosuccinate synthetase ISX50_08430 PF08238 Sel1 repeat ISX50_08435 PF01979 Amidohydrolase family ISX50_08440 PF00575 S1 RNA binding domain ISX50_08440 PF08461 Ribonuclease R winged-helix domain ISX50_08440 PF08206 Ribonuclease B OB domain ISX50_08440 PF17876 Cold shock domain ISX50_08440 PF00773 RNB domain ISX50_08445 PF00588 SpoU rRNA Methylase family ISX50_08445 PF08032 RNA 2'-O ribose methyltransferase substrate binding ISX50_08450 PF01250 Ribosomal protein S6 ISX50_08455 PF01084 Ribosomal protein S18 ISX50_08460 PF03948 Ribosomal protein L9, C-terminal domain ISX50_08460 PF01281 Ribosomal protein L9, N-terminal domain ISX50_08470 PF00772 DnaB-like helicase N terminal domain ISX50_08470 PF03796 DnaB-like helicase C terminal domain ISX50_08475 PF00842 Alanine racemase, C-terminal domain ISX50_08475 PF01168 Alanine racemase, N-terminal domain ISX50_08485 PF01894 Uncharacterised protein family UPF0047 ISX50_08490 PF00342 Phosphoglucose isomerase ISX50_08505 PF01475 Ferric uptake regulator family ISX50_08625 PF01207 Dihydrouridine synthase (Dus) ISX50_08630 PF09583 Phage shock protein G (Phageshock_PspG) ISX50_08645 PF00175 Oxidoreductase NAD-binding domain ISX50_08645 PF00667 FAD binding domain ISX50_08645 PF00258 Flavodoxin ISX50_08650 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ISX50_08650 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ISX50_08655 PF01507 Phosphoadenosine phosphosulfate reductase family ISX50_08730 PF00999 Sodium/hydrogen exchanger family ISX50_08735 PF02310 B12 binding domain ISX50_08735 PF02607 B12 binding domain ISX50_08735 PF02965 Vitamin B12 dependent methionine synthase, activation domain ISX50_08735 PF00809 Pterin binding enzyme ISX50_08735 PF02574 Homocysteine S-methyltransferase ISX50_08740 PF01842 ACT domain ISX50_08740 PF00696 Amino acid kinase family ISX50_08745 PF00266 Aminotransferase class-V ISX50_08755 PF17760 UvrA interaction domain ISX50_08755 PF00005 ABC transporter ISX50_08755 PF17755 UvrA DNA-binding domain ISX50_08760 PF00483 Nucleotidyl transferase ISX50_08765 PF00196 Bacterial regulatory proteins, luxR family ISX50_08770 PF00436 Single-strand binding protein family ISX50_08775 PF00563 EAL domain ISX50_08775 PF17157 Gammaproteobacterial periplasmic sensor domain ISX50_08775 PF00990 Diguanylate cyclase, GGDEF domain ISX50_08795 PF11741 AMIN domain ISX50_08795 PF03958 Bacterial type II/III secretion system short domain ISX50_08795 PF00263 Bacterial type II and III secretion system protein ISX50_08795 PF07660 Secretin and TonB N terminus short domain ISX50_08800 PF01471 Putative peptidoglycan binding domain ISX50_08800 PF13401 AAA domain ISX50_08810 PF00437 Type II/IV secretion system protein ISX50_08810 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ISX50_08815 PF00482 Type II secretion system (T2SS), protein F ISX50_08825 PF07963 Prokaryotic N-terminal methylation motif ISX50_08830 PF07963 Prokaryotic N-terminal methylation motif ISX50_08865 PF04085 rod shape-determining protein MreC ISX50_08870 PF04093 rod shape-determining protein MreD ISX50_08875 PF02545 Maf-like protein ISX50_08880 PF10150 Ribonuclease E/G family ISX50_08880 PF00575 S1 RNA binding domain ISX50_08890 PF00795 Carbon-nitrogen hydrolase ISX50_08895 PF01523 Putative modulator of DNA gyrase ISX50_08900 PF13638 PIN domain ISX50_08900 PF02562 PhoH-like protein ISX50_08905 PF00271 Helicase conserved C-terminal domain ISX50_08905 PF12137 RNA polymerase recycling family C-terminal ISX50_08905 PF18339 RapA N-terminal Tudor like domain 1 ISX50_08905 PF00176 SNF2 family N-terminal domain ISX50_08905 PF18337 RapA N-terminal Tudor like domain ISX50_08915 PF00849 RNA pseudouridylate synthase ISX50_08920 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISX50_08920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISX50_08925 PF00582 Universal stress protein family ISX50_08940 PF02863 Arginine repressor, C-terminal domain ISX50_08940 PF01316 Arginine repressor, DNA binding domain ISX50_08945 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ISX50_08945 PF00056 lactate/malate dehydrogenase, NAD binding domain ISX50_08955 PF00348 Polyprenyl synthetase ISX50_08960 PF00829 Ribosomal prokaryotic L21 protein ISX50_08965 PF01016 Ribosomal L27 protein ISX50_08970 PF01018 GTP1/OBG ISX50_08970 PF01926 50S ribosome-binding GTPase ISX50_08975 PF06738 Putative threonine/serine exporter ISX50_08980 PF12821 Threonine/Serine exporter, ThrE ISX50_08985 PF00186 Dihydrofolate reductase ISX50_08990 PF00149 Calcineurin-like phosphoesterase ISX50_08995 PF04379 ApaG domain ISX50_09000 PF00398 Ribosomal RNA adenine dimethylase ISX50_09005 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ISX50_09010 PF00639 PPIC-type PPIASE domain ISX50_09010 PF09312 SurA N-terminal domain ISX50_09015 PF04453 LPS transport system D ISX50_09015 PF03968 OstA-like protein ISX50_09020 PF00226 DnaJ domain ISX50_09020 PF05099 Tellurite resistance protein TerB ISX50_09035 PF00694 Aconitase C-terminal domain ISX50_09040 PF00330 Aconitase family (aconitate hydratase) ISX50_09045 PF00180 Isocitrate/isopropylmalate dehydrogenase ISX50_09050 PF00682 HMGL-like ISX50_09050 PF08502 LeuA allosteric (dimerisation) domain ISX50_09065 PF00873 AcrB/AcrD/AcrF family ISX50_09070 PF01569 PAP2 superfamily ISX50_09080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_09080 PF03466 LysR substrate binding domain ISX50_09085 PF00501 AMP-binding enzyme ISX50_09090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISX50_09090 PF00205 Thiamine pyrophosphate enzyme, central domain ISX50_09090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISX50_09095 PF10369 Small subunit of acetolactate synthase ISX50_09100 PF00990 Diguanylate cyclase, GGDEF domain ISX50_09100 PF17158 Membrane-associated sensor, integral membrane domain ISX50_09110 PF02887 Pyruvate kinase, alpha/beta domain ISX50_09110 PF00224 Pyruvate kinase, barrel domain ISX50_09115 PF00455 DeoR C terminal sensor domain ISX50_09115 PF08220 DeoR-like helix-turn-helix domain ISX50_09120 PF01380 SIS domain ISX50_09125 PF01053 Cys/Met metabolism PLP-dependent enzyme ISX50_09135 PF03979 Sigma-70 factor, region 1.1 ISX50_09135 PF00140 Sigma-70 factor, region 1.2 ISX50_09135 PF04542 Sigma-70 region 2 ISX50_09135 PF04546 Sigma-70, non-essential region ISX50_09135 PF04545 Sigma-70, region 4 ISX50_09135 PF04539 Sigma-70 region 3 ISX50_09140 PF10410 DnaB-helicase binding domain of primase ISX50_09140 PF08278 DNA primase DnaG DnaB-binding ISX50_09140 PF08275 DNA primase catalytic core, N-terminal domain ISX50_09140 PF01807 CHC2 zinc finger ISX50_09145 PF09424 Yqey-like protein ISX50_09150 PF01165 Ribosomal protein S21 ISX50_09155 PF00814 Glycoprotease family ISX50_09160 PF12697 Alpha/beta hydrolase family ISX50_09165 PF02660 Glycerol-3-phosphate acyltransferase ISX50_09170 PF02152 Dihydroneopterin aldolase ISX50_09175 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ISX50_09180 PF02673 Bacitracin resistance protein BacA ISX50_09185 PF12627 Probable RNA and SrmB- binding site of polymerase A ISX50_09185 PF01743 Poly A polymerase head domain ISX50_09185 PF01966 HD domain ISX50_09190 PF01471 Putative peptidoglycan binding domain ISX50_09190 PF13401 AAA domain ISX50_09200 PF08239 Bacterial SH3 domain ISX50_09205 PF01384 Phosphate transporter family ISX50_09210 PF01865 Protein of unknown function DUF47 ISX50_09215 PF01928 CYTH domain ISX50_09220 PF00027 Cyclic nucleotide-binding domain ISX50_09220 PF00520 Ion transport protein ISX50_09225 PF02743 Cache domain ISX50_09225 PF00672 HAMP domain ISX50_09225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_09230 PF08335 GlnD PII-uridylyltransferase ISX50_09230 PF03710 Glutamate-ammonia ligase adenylyltransferase ISX50_09235 PF01467 Cytidylyltransferase-like ISX50_09235 PF00294 pfkB family carbohydrate kinase ISX50_09240 PF02321 Outer membrane efflux protein ISX50_09245 PF00293 NUDIX domain ISX50_09250 PF06853 Protein of unknown function (DUF1249) ISX50_09255 PF00149 Calcineurin-like phosphoesterase ISX50_09260 PF05728 Uncharacterised protein family (UPF0227) ISX50_09265 PF00204 DNA gyrase B ISX50_09265 PF00986 DNA gyrase B subunit, carboxyl terminus ISX50_09265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_09265 PF01751 Toprim domain ISX50_09270 PF03989 DNA gyrase C-terminal domain, beta-propeller ISX50_09270 PF00521 DNA gyrase/topoisomerase IV, subunit A ISX50_09275 PF13180 PDZ domain ISX50_09280 PF00595 PDZ domain ISX50_09285 PF06295 Protein of unknown function (DUF1043) ISX50_09290 PF03969 AFG1-like ATPase ISX50_09295 PF00572 Ribosomal protein L13 ISX50_09300 PF00380 Ribosomal protein S9/S16 ISX50_09305 PF00355 Rieske [2Fe-2S] domain ISX50_09305 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ISX50_09310 PF00032 Cytochrome b(C-terminal)/b6/petD ISX50_09310 PF00033 Cytochrome b/b6/petB ISX50_09315 PF02167 Cytochrome C1 family ISX50_09320 PF00043 Glutathione S-transferase, C-terminal domain ISX50_09320 PF02798 Glutathione S-transferase, N-terminal domain ISX50_09325 PF04386 Stringent starvation protein B ISX50_09330 PF04972 BON domain ISX50_09335 PF13580 SIS domain ISX50_09340 PF02021 Uncharacterised protein family UPF0102 ISX50_09345 PF04348 LppC putative lipoprotein ISX50_09350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ISX50_09360 PF01795 MraW methylase family ISX50_09365 PF04999 Cell division protein FtsL ISX50_09370 PF03717 Penicillin-binding Protein dimerisation domain ISX50_09370 PF00905 Penicillin binding protein transpeptidase domain ISX50_09375 PF08245 Mur ligase middle domain ISX50_09375 PF02875 Mur ligase family, glutamate ligase domain ISX50_09375 PF01225 Mur ligase family, catalytic domain ISX50_09380 PF08245 Mur ligase middle domain ISX50_09380 PF02875 Mur ligase family, glutamate ligase domain ISX50_09380 PF01225 Mur ligase family, catalytic domain ISX50_09385 PF00953 Glycosyl transferase family 4 ISX50_09385 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ISX50_09390 PF08245 Mur ligase middle domain ISX50_09390 PF02875 Mur ligase family, glutamate ligase domain ISX50_09395 PF01098 Cell cycle protein ISX50_09400 PF03033 Glycosyltransferase family 28 N-terminal domain ISX50_09400 PF04101 Glycosyltransferase family 28 C-terminal domain ISX50_09405 PF08245 Mur ligase middle domain ISX50_09405 PF02875 Mur ligase family, glutamate ligase domain ISX50_09405 PF01225 Mur ligase family, catalytic domain ISX50_09410 PF08478 POTRA domain, FtsQ-type ISX50_09410 PF03799 Cell division protein FtsQ ISX50_09415 PF02491 SHS2 domain inserted in FTSA ISX50_09420 PF00091 Tubulin/FtsZ family, GTPase domain ISX50_09420 PF12327 FtsZ family, C-terminal domain ISX50_09425 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ISX50_09430 PF07516 SecA Wing and Scaffold domain ISX50_09430 PF07517 SecA DEAD-like domain ISX50_09430 PF02810 SEC-C motif ISX50_09430 PF01043 SecA preprotein cross-linking domain ISX50_09435 PF00293 NUDIX domain ISX50_09440 PF01113 Dihydrodipicolinate reductase, N-terminus ISX50_09440 PF05173 Dihydrodipicolinate reductase, C-terminus ISX50_09445 PF00117 Glutamine amidotransferase class-I ISX50_09445 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ISX50_09450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ISX50_09450 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ISX50_09450 PF02142 MGS-like domain ISX50_09455 PF01925 Sulfite exporter TauE/SafE ISX50_09460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_09460 PF03466 LysR substrate binding domain ISX50_09465 PF03458 UPF0126 domain ISX50_09470 PF01497 Periplasmic binding protein ISX50_09480 PF01048 Phosphorylase superfamily ISX50_09490 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ISX50_09490 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_09495 PF01493 GXGXG motif ISX50_09495 PF01645 Conserved region in glutamate synthase ISX50_09495 PF04898 Glutamate synthase central domain ISX50_09495 PF00310 Glutamine amidotransferases class-II ISX50_09500 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_09500 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ISX50_09505 PF04898 Glutamate synthase central domain ISX50_09505 PF01493 GXGXG motif ISX50_09505 PF00310 Glutamine amidotransferases class-II ISX50_09505 PF01645 Conserved region in glutamate synthase ISX50_09510 PF04055 Radical SAM superfamily ISX50_09510 PF16199 Radical_SAM C-terminal domain ISX50_09515 PF00563 EAL domain ISX50_09515 PF01590 GAF domain ISX50_09515 PF00990 Diguanylate cyclase, GGDEF domain ISX50_09515 PF00360 Phytochrome region ISX50_09520 PF01627 Hpt domain ISX50_09520 PF00989 PAS fold ISX50_09520 PF18415 Histidine kinase receptor ArcB trans-membrane domain ISX50_09520 PF00512 His Kinase A (phospho-acceptor) domain ISX50_09520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_09520 PF00072 Response regulator receiver domain ISX50_09530 PF00072 Response regulator receiver domain ISX50_09530 PF00486 Transcriptional regulatory protein, C terminal ISX50_09540 PF03737 Aldolase/RraA ISX50_09550 PF00696 Amino acid kinase family ISX50_09550 PF01842 ACT domain ISX50_09550 PF13840 ACT domain ISX50_09550 PF00742 Homoserine dehydrogenase ISX50_09550 PF03447 Homoserine dehydrogenase, NAD binding domain ISX50_09555 PF00288 GHMP kinases N terminal domain ISX50_09555 PF08544 GHMP kinases C terminal ISX50_09560 PF00291 Pyridoxal-phosphate dependent enzyme ISX50_09560 PF14821 Threonine synthase N terminus ISX50_09565 PF01228 Glycine radical ISX50_09570 PF01261 Xylose isomerase-like TIM barrel ISX50_09575 PF03167 Uracil DNA glycosylase superfamily ISX50_09590 PF01235 Sodium:alanine symporter family ISX50_09595 PF03883 Peroxide stress protein YaaA ISX50_09600 PF00270 DEAD/DEAH box helicase ISX50_09600 PF00271 Helicase conserved C-terminal domain ISX50_09605 PF05175 Methyltransferase small domain ISX50_09610 PF05525 Branched-chain amino acid transport protein ISX50_09615 PF00258 Flavodoxin ISX50_09620 PF00589 Phage integrase family ISX50_09620 PF02899 Phage integrase, N-terminal SAM-like domain ISX50_09625 PF10411 Disulfide bond isomerase protein N-terminus ISX50_09625 PF13098 Thioredoxin-like domain ISX50_09630 PF01368 DHH family ISX50_09630 PF02272 DHHA1 domain ISX50_09630 PF17768 RecJ OB domain ISX50_09640 PF00152 tRNA synthetases class II (D, K and N) ISX50_09640 PF01336 OB-fold nucleic acid binding domain ISX50_09645 PF02954 Bacterial regulatory protein, Fis family ISX50_09645 PF00072 Response regulator receiver domain ISX50_09645 PF00158 Sigma-54 interaction domain ISX50_09660 PF02976 DNA mismatch repair enzyme MutH ISX50_09665 PF00293 NUDIX domain ISX50_09670 PF01590 GAF domain ISX50_09670 PF05524 PEP-utilising enzyme, N-terminal ISX50_09670 PF00391 PEP-utilising enzyme, mobile domain ISX50_09670 PF02896 PEP-utilising enzyme, TIM barrel domain ISX50_09675 PF01925 Sulfite exporter TauE/SafE ISX50_09680 PF01790 Prolipoprotein diacylglyceryl transferase ISX50_09685 PF00303 Thymidylate synthase ISX50_09690 PF02690 Na+/Pi-cotransporter ISX50_09695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_09695 PF03466 LysR substrate binding domain ISX50_09700 PF01022 Bacterial regulatory protein, arsR family ISX50_09705 PF01649 Ribosomal protein S20 ISX50_09710 PF03023 Lipid II flippase MurJ ISX50_09715 PF06574 FAD synthetase ISX50_09715 PF01687 Riboflavin kinase ISX50_09720 PF08264 Anticodon-binding domain of tRNA ISX50_09720 PF00133 tRNA synthetases class I (I, L, M and V) ISX50_09720 PF06827 Zinc finger found in FPG and IleRS ISX50_09725 PF01252 Signal peptidase (SPase) II ISX50_09730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISX50_09735 PF02401 LytB protein ISX50_09740 PF00072 Response regulator receiver domain ISX50_09740 PF04397 LytTr DNA-binding domain ISX50_09745 PF07694 5TMR of 5TMR-LYT ISX50_09745 PF06580 Histidine kinase ISX50_09755 PF02554 Carbon starvation protein CstA ISX50_09765 PF13580 SIS domain ISX50_09770 PF03702 Anhydro-N-acetylmuramic acid kinase ISX50_09775 PF00933 Glycosyl hydrolase family 3 N terminal domain ISX50_09780 PF00793 DAHP synthetase I family ISX50_09785 PF01817 Chorismate mutase type II ISX50_09785 PF02153 Prephenate dehydrogenase ISX50_09790 PF04225 Opacity-associated protein A LysM-like domain ISX50_09790 PF01551 Peptidase family M23 ISX50_09795 PF07238 PilZ domain ISX50_09800 PF12848 ABC transporter ISX50_09800 PF00005 ABC transporter ISX50_09805 PF14718 Soluble lytic murein transglycosylase L domain ISX50_09805 PF01464 Transglycosylase SLT domain ISX50_09810 PF01371 Trp repressor protein ISX50_09815 PF01931 Protein of unknown function DUF84 ISX50_09820 PF00563 EAL domain ISX50_09820 PF00990 Diguanylate cyclase, GGDEF domain ISX50_09825 PF01817 Chorismate mutase type II ISX50_09825 PF00800 Prephenate dehydratase ISX50_09830 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ISX50_09835 PF01464 Transglycosylase SLT domain ISX50_09840 PF13525 Outer membrane lipoprotein ISX50_09845 PF01479 S4 domain ISX50_09845 PF00849 RNA pseudouridylate synthase ISX50_09850 PF02578 Multi-copper polyphenol oxidoreductase laccase ISX50_09855 PF07724 AAA domain (Cdc48 subfamily) ISX50_09855 PF17871 AAA lid domain ISX50_09855 PF02861 Clp amino terminal domain, pathogenicity island component ISX50_09855 PF10431 C-terminal, D2-small domain, of ClpB protein ISX50_09855 PF00004 ATPase family associated with various cellular activities (AAA) ISX50_09895 PF03411 Penicillin-insensitive murein endopeptidase ISX50_09905 PF12838 4Fe-4S dicluster domain ISX50_09910 PF16325 Peptidase family U32 C-terminal domain ISX50_09910 PF01136 Peptidase family U32 ISX50_09915 PF04381 Putative exonuclease, RdgC ISX50_09920 PF00072 Response regulator receiver domain ISX50_09920 PF00486 Transcriptional regulatory protein, C terminal ISX50_09925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_09925 PF00512 His Kinase A (phospho-acceptor) domain ISX50_09925 PF00989 PAS fold ISX50_09925 PF11808 Phosphate regulon sensor protein PhoR ISX50_09930 PF12849 PBP superfamily domain ISX50_09935 PF02541 Ppx/GppA phosphatase family ISX50_09940 PF17941 Polyphosphate kinase C-terminal domain 1 ISX50_09940 PF13089 Polyphosphate kinase N-terminal domain ISX50_09940 PF02503 Polyphosphate kinase middle domain ISX50_09940 PF13090 Polyphosphate kinase C-terminal domain 2 ISX50_09945 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_09950 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_09955 PF00005 ABC transporter ISX50_09960 PF01895 PhoU domain ISX50_09975 PF03466 LysR substrate binding domain ISX50_09975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_09980 PF03932 CutC family ISX50_09985 PF10417 C-terminal domain of 1-Cys peroxiredoxin ISX50_09985 PF00578 AhpC/TSA family ISX50_09990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_09990 PF03466 LysR substrate binding domain ISX50_09995 PF00571 CBS domain ISX50_10000 PF02547 Queuosine biosynthesis protein ISX50_10005 PF01702 Queuine tRNA-ribosyltransferase ISX50_10010 PF02699 Preprotein translocase subunit ISX50_10015 PF07549 SecD/SecF GG Motif ISX50_10015 PF02355 Protein export membrane protein ISX50_10015 PF13721 SecD export protein N-terminal TM region ISX50_10020 PF07549 SecD/SecF GG Motif ISX50_10020 PF02355 Protein export membrane protein ISX50_10025 PF00459 Inositol monophosphatase family ISX50_10030 PF00588 SpoU rRNA Methylase family ISX50_10035 PF02082 Transcriptional regulator ISX50_10040 PF00266 Aminotransferase class-V ISX50_10045 PF01592 NifU-like N terminal domain ISX50_10050 PF01521 Iron-sulphur cluster biosynthesis ISX50_10055 PF00226 DnaJ domain ISX50_10055 PF07743 HSCB C-terminal oligomerisation domain ISX50_10060 PF00012 Hsp70 protein ISX50_10065 PF00111 2Fe-2S iron-sulfur cluster binding domain ISX50_10070 PF04384 Iron-sulphur cluster assembly ISX50_10075 PF12404 Peptidase ISX50_10075 PF00883 Cytosol aminopeptidase family, catalytic domain ISX50_10080 PF00334 Nucleoside diphosphate kinase ISX50_10085 PF04055 Radical SAM superfamily ISX50_10090 PF13464 Domain of unknown function (DUF4115) ISX50_10095 PF04551 GcpE protein ISX50_10100 PF03129 Anticodon binding domain ISX50_10100 PF13393 Histidyl-tRNA synthetase ISX50_10105 PF09976 Tetratricopeptide repeat-like domain ISX50_10110 PF13360 PQQ-like domain ISX50_10115 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ISX50_10115 PF01926 50S ribosome-binding GTPase ISX50_10125 PF08448 PAS fold ISX50_10125 PF00990 Diguanylate cyclase, GGDEF domain ISX50_10140 PF02653 Branched-chain amino acid transport system / permease component ISX50_10150 PF12399 Branched-chain amino acid ATP-binding cassette transporter ISX50_10150 PF00005 ABC transporter ISX50_10155 PF00005 ABC transporter ISX50_10160 PF01774 UreD urease accessory protein ISX50_10165 PF00547 Urease, gamma subunit ISX50_10170 PF00699 Urease beta subunit ISX50_10175 PF00449 Urease alpha-subunit, N-terminal domain ISX50_10175 PF01979 Amidohydrolase family ISX50_10180 PF05194 UreE urease accessory protein, C-terminal domain ISX50_10180 PF02814 UreE urease accessory protein, N-terminal domain ISX50_10190 PF01730 UreF ISX50_10195 PF02492 CobW/HypB/UreG, nucleotide-binding domain ISX50_10200 PF02601 Exonuclease VII, large subunit ISX50_10200 PF13742 OB-fold nucleic acid binding domain ISX50_10205 PF00478 IMP dehydrogenase / GMP reductase domain ISX50_10205 PF00571 CBS domain ISX50_10210 PF02540 NAD synthase ISX50_10210 PF00117 Glutamine amidotransferase class-I ISX50_10210 PF00958 GMP synthase C terminal domain ISX50_10215 PF00704 Glycosyl hydrolases family 18 ISX50_10215 PF06483 Chitinase C ISX50_10220 PF03553 Na+/H+ antiporter family ISX50_10230 PF01184 GPR1/FUN34/yaaH family ISX50_10235 PF01235 Sodium:alanine symporter family ISX50_10240 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ISX50_10240 PF10996 Beta-Casp domain ISX50_10240 PF00753 Metallo-beta-lactamase superfamily ISX50_10245 PF01553 Acyltransferase ISX50_10270 PF08443 RimK-like ATP-grasp domain ISX50_10270 PF18030 RimK PreATP-grasp domain ISX50_10280 PF12161 HsdM N-terminal domain ISX50_10280 PF02384 N-6 DNA Methylase ISX50_10295 PF18766 SWI2/SNF2 ATPase ISX50_10295 PF11867 Domain of unknown function (DUF3387) ISX50_10295 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ISX50_10310 PF01668 SmpB protein ISX50_10315 PF03364 Polyketide cyclase / dehydrase and lipid transport ISX50_10320 PF03658 RnfH family Ubiquitin ISX50_10325 PF04355 SmpA / OmlA family ISX50_10330 PF02463 RecF/RecN/SMC N terminal domain ISX50_10335 PF01513 ATP-NAD kinase ISX50_10340 PF01025 GrpE ISX50_10345 PF00375 Sodium:dicarboxylate symporter family ISX50_10355 PF00012 Hsp70 protein ISX50_10360 PF00684 DnaJ central domain ISX50_10360 PF01556 DnaJ C terminal domain ISX50_10360 PF00226 DnaJ domain ISX50_10365 PF07963 Prokaryotic N-terminal methylation motif ISX50_10365 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor ISX50_10390 PF03806 AbgT putative transporter family ISX50_10395 PF00571 CBS domain ISX50_10395 PF03471 Transporter associated domain ISX50_10395 PF01595 Cyclin M transmembrane N-terminal domain ISX50_10400 PF14437 MafB19-like deaminase ISX50_10405 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISX50_10405 PF01464 Transglycosylase SLT domain ISX50_10410 PF02769 AIR synthase related protein, C-terminal domain ISX50_10410 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ISX50_10410 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ISX50_10420 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ISX50_10420 PF14602 Hexapeptide repeat of succinyl-transferase ISX50_10425 PF00149 Calcineurin-like phosphoesterase ISX50_10425 PF02872 5'-nucleotidase, C-terminal domain ISX50_10430 PF01914 MarC family integral membrane protein ISX50_10445 PF07130 YebG protein ISX50_10450 PF03466 LysR substrate binding domain ISX50_10450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_10460 PF17946 RecC C-terminal domain ISX50_10465 PF00580 UvrD/REP helicase N-terminal domain ISX50_10465 PF12705 PD-(D/E)XK nuclease superfamily ISX50_10465 PF13361 UvrD-like helicase C-terminal domain ISX50_10470 PF13538 UvrD-like helicase C-terminal domain ISX50_10480 PF00583 Acetyltransferase (GNAT) family ISX50_10480 PF00696 Amino acid kinase family ISX50_10490 PF03562 MltA specific insert domain ISX50_10490 PF06725 3D domain ISX50_10495 PF00899 ThiF family ISX50_10500 PF02657 Fe-S metabolism associated domain ISX50_10505 PF00266 Aminotransferase class-V ISX50_10510 PF08546 Ketopantoate reductase PanE/ApbA C terminal ISX50_10510 PF02558 Ketopantoate reductase PanE/ApbA ISX50_10515 PF03502 Nucleoside-specific channel-forming protein, Tsx ISX50_10525 PF07690 Major Facilitator Superfamily ISX50_10530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ISX50_10540 PF05175 Methyltransferase small domain ISX50_10545 PF01722 BolA-like protein ISX50_10550 PF11973 NQRA C-terminal domain ISX50_10550 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ISX50_10555 PF03116 NQR2, RnfD, RnfE family ISX50_10560 PF04205 FMN-binding domain ISX50_10565 PF02508 Rnf-Nqr subunit, membrane protein ISX50_10570 PF02508 Rnf-Nqr subunit, membrane protein ISX50_10575 PF00111 2Fe-2S iron-sulfur cluster binding domain ISX50_10575 PF00175 Oxidoreductase NAD-binding domain ISX50_10575 PF00970 Oxidoreductase FAD-binding domain ISX50_10580 PF02424 ApbE family ISX50_10585 PF04400 (Na+)-NQR maturation NqrM ISX50_10590 PF00072 Response regulator receiver domain ISX50_10590 PF00990 Diguanylate cyclase, GGDEF domain ISX50_10595 PF11799 impB/mucB/samB family C-terminal domain ISX50_10595 PF11798 IMS family HHH motif ISX50_10595 PF00817 impB/mucB/samB family ISX50_10600 PF00270 DEAD/DEAH box helicase ISX50_10600 PF09382 RQC domain ISX50_10600 PF00271 Helicase conserved C-terminal domain ISX50_10600 PF00570 HRDC domain ISX50_10600 PF16124 RecQ zinc-binding ISX50_10615 PF00209 Sodium:neurotransmitter symporter family ISX50_10620 PF04055 Radical SAM superfamily ISX50_10620 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ISX50_10625 PF03099 Biotin/lipoate A/B protein ligase family ISX50_10630 PF04359 Protein of unknown function (DUF493) ISX50_10635 PF00768 D-alanyl-D-alanine carboxypeptidase ISX50_10635 PF07943 Penicillin-binding protein 5, C-terminal domain ISX50_10640 PF03330 Lytic transglycolase ISX50_10640 PF05036 Sporulation related domain ISX50_10645 PF01098 Cell cycle protein ISX50_10650 PF03717 Penicillin-binding Protein dimerisation domain ISX50_10650 PF00905 Penicillin binding protein transpeptidase domain ISX50_10655 PF02590 Predicted SPOUT methyltransferase ISX50_10665 PF06144 DNA polymerase III, delta subunit ISX50_10665 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ISX50_10670 PF04390 Lipopolysaccharide-assembly ISX50_10675 PF00133 tRNA synthetases class I (I, L, M and V) ISX50_10675 PF13603 Leucyl-tRNA synthetase, Domain 2 ISX50_10675 PF08264 Anticodon-binding domain of tRNA ISX50_10680 PF07295 Zinc-ribbon containing domain ISX50_10685 PF00795 Carbon-nitrogen hydrolase ISX50_10690 PF00571 CBS domain ISX50_10690 PF03471 Transporter associated domain ISX50_10695 PF02130 Uncharacterized protein family UPF0054 ISX50_10700 PF02562 PhoH-like protein ISX50_10705 PF00919 Uncharacterized protein family UPF0004 ISX50_10705 PF01938 TRAM domain ISX50_10705 PF04055 Radical SAM superfamily ISX50_10710 PF01494 FAD binding domain ISX50_10715 PF10282 Lactonase, 7-bladed beta-propeller ISX50_10815 PF06071 Protein of unknown function (DUF933) ISX50_10815 PF01926 50S ribosome-binding GTPase ISX50_10820 PF01195 Peptidyl-tRNA hydrolase ISX50_10825 PF14572 Phosphoribosyl synthetase-associated domain ISX50_10825 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ISX50_10830 PF08544 GHMP kinases C terminal ISX50_10830 PF00288 GHMP kinases N terminal domain ISX50_10835 PF03550 Outer membrane lipoprotein LolB ISX50_10840 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ISX50_10840 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ISX50_10840 PF01488 Shikimate / quinate 5-dehydrogenase ISX50_10845 PF00472 RF-1 domain ISX50_10845 PF03462 PCRF domain ISX50_10850 PF13847 Methyltransferase domain ISX50_10850 PF17827 PrmC N-terminal domain ISX50_10855 PF04247 Invasion gene expression up-regulator, SirB ISX50_10860 PF13369 Transglutaminase-like superfamily ISX50_10865 PF00793 DAHP synthetase I family ISX50_10870 PF00149 Calcineurin-like phosphoesterase ISX50_10870 PF02872 5'-nucleotidase, C-terminal domain ISX50_10875 PF04073 Aminoacyl-tRNA editing domain ISX50_10880 PF01479 S4 domain ISX50_10880 PF00849 RNA pseudouridylate synthase ISX50_10885 PF01713 Smr domain ISX50_10910 PF00728 Glycosyl hydrolase family 20, catalytic domain ISX50_10910 PF02838 Glycosyl hydrolase family 20, domain 2 ISX50_10910 PF03173 Putative carbohydrate binding domain ISX50_10910 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain ISX50_10925 PF00403 Heavy-metal-associated domain ISX50_10930 PF00749 tRNA synthetases class I (E and Q), catalytic domain ISX50_10940 PF00109 Beta-ketoacyl synthase, N-terminal domain ISX50_10940 PF02801 Beta-ketoacyl synthase, C-terminal domain ISX50_10955 PF00109 Beta-ketoacyl synthase, N-terminal domain ISX50_10955 PF02801 Beta-ketoacyl synthase, C-terminal domain ISX50_10980 PF00221 Aromatic amino acid lyase ISX50_10985 PF00535 Glycosyl transferase family 2 ISX50_10995 PF00501 AMP-binding enzyme ISX50_10995 PF13193 AMP-binding enzyme C-terminal domain ISX50_11005 PF00550 Phosphopantetheine attachment site ISX50_11010 PF00550 Phosphopantetheine attachment site ISX50_11035 PF04820 Tryptophan halogenase ISX50_11070 PF13144 Chaperone for flagella basal body P-ring formation ISX50_11075 PF01584 CheW-like domain ISX50_11075 PF00072 Response regulator receiver domain ISX50_11080 PF03705 CheR methyltransferase, all-alpha domain ISX50_11080 PF01739 CheR methyltransferase, SAM binding domain ISX50_11085 PF00460 Flagella basal body rod protein ISX50_11090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISX50_11090 PF00460 Flagella basal body rod protein ISX50_11095 PF13861 FlgD Tudor-like domain ISX50_11095 PF13860 FlgD Ig-like domain ISX50_11095 PF03963 Flagellar hook capping protein - N-terminal region ISX50_11100 PF00460 Flagella basal body rod protein ISX50_11100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISX50_11100 PF07559 Flagellar basal body protein FlaE ISX50_11105 PF00460 Flagella basal body rod protein ISX50_11105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISX50_11110 PF00460 Flagella basal body rod protein ISX50_11110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISX50_11115 PF02107 Flagellar L-ring protein ISX50_11120 PF02119 Flagellar P-ring protein ISX50_11125 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ISX50_11125 PF10135 Rod binding protein ISX50_11130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISX50_11130 PF07196 Flagellin hook IN motif ISX50_11140 PF07196 Flagellin hook IN motif ISX50_11140 PF00669 Bacterial flagellin N-terminal helical region ISX50_11140 PF00700 Bacterial flagellin C-terminal helical region ISX50_11145 PF00669 Bacterial flagellin N-terminal helical region ISX50_11145 PF07196 Flagellin hook IN motif ISX50_11145 PF00700 Bacterial flagellin C-terminal helical region ISX50_11150 PF00700 Bacterial flagellin C-terminal helical region ISX50_11150 PF07196 Flagellin hook IN motif ISX50_11150 PF00669 Bacterial flagellin N-terminal helical region ISX50_11155 PF03646 FlaG protein ISX50_11160 PF07196 Flagellin hook IN motif ISX50_11160 PF07195 Flagellar hook-associated protein 2 C-terminus ISX50_11160 PF02465 Flagellar hook-associated protein 2 N-terminus ISX50_11170 PF02561 Flagellar protein FliS ISX50_11175 PF00158 Sigma-54 interaction domain ISX50_11175 PF02954 Bacterial regulatory protein, Fis family ISX50_11175 PF06490 Flagellar regulatory protein FleQ ISX50_11180 PF13188 PAS domain ISX50_11180 PF00512 His Kinase A (phospho-acceptor) domain ISX50_11180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_11185 PF00158 Sigma-54 interaction domain ISX50_11185 PF00072 Response regulator receiver domain ISX50_11185 PF02954 Bacterial regulatory protein, Fis family ISX50_11190 PF02049 Flagellar hook-basal body complex protein FliE ISX50_11195 PF08345 Flagellar M-ring protein C-terminal ISX50_11195 PF01514 Secretory protein of YscJ/FliF family ISX50_11200 PF14842 FliG N-terminal domain ISX50_11200 PF14841 FliG middle domain ISX50_11200 PF01706 FliG C-terminal domain ISX50_11210 PF18269 T3SS EscN ATPase C-terminal domain ISX50_11210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISX50_11230 PF02154 Flagellar motor switch protein FliM ISX50_11230 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ISX50_11235 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ISX50_11240 PF04347 Flagellar biosynthesis protein, FliO ISX50_11245 PF00813 FliP family ISX50_11250 PF01313 Bacterial export proteins, family 3 ISX50_11255 PF01311 Bacterial export proteins, family 1 ISX50_11260 PF01312 FlhB HrpN YscU SpaS Family ISX50_11265 PF00771 FHIPEP family ISX50_11270 PF00448 SRP54-type protein, GTPase domain ISX50_11275 PF10609 NUBPL iron-transfer P-loop NTPase ISX50_11280 PF04545 Sigma-70, region 4 ISX50_11280 PF04539 Sigma-70 region 3 ISX50_11280 PF04542 Sigma-70 region 2 ISX50_11285 PF00072 Response regulator receiver domain ISX50_11290 PF04344 Chemotaxis phosphatase, CheZ ISX50_11295 PF01584 CheW-like domain ISX50_11295 PF00072 Response regulator receiver domain ISX50_11295 PF01627 Hpt domain ISX50_11295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_11295 PF02895 Signal transducing histidine kinase, homodimeric domain ISX50_11300 PF00072 Response regulator receiver domain ISX50_11300 PF01339 CheB methylesterase ISX50_11305 PF13614 AAA domain ISX50_11315 PF01584 CheW-like domain ISX50_11325 PF00005 ABC transporter ISX50_11330 PF03379 CcmB protein ISX50_11335 PF01578 Cytochrome C assembly protein ISX50_11340 PF04995 Heme exporter protein D (CcmD) ISX50_11345 PF03100 CcmE ISX50_11350 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ISX50_11350 PF01578 Cytochrome C assembly protein ISX50_11355 PF08534 Redoxin ISX50_11360 PF03918 Cytochrome C biogenesis protein ISX50_11365 PF03918 Cytochrome C biogenesis protein ISX50_11370 PF04333 MlaA lipoprotein ISX50_11375 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ISX50_11380 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ISX50_11390 PF08281 Sigma-70, region 4 ISX50_11390 PF04542 Sigma-70 region 2 ISX50_11395 PF00108 Thiolase, N-terminal domain ISX50_11395 PF02803 Thiolase, C-terminal domain ISX50_11400 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ISX50_11400 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ISX50_11400 PF00378 Enoyl-CoA hydratase/isomerase ISX50_11405 PF00675 Insulinase (Peptidase family M16) ISX50_11405 PF05193 Peptidase M16 inactive domain ISX50_11405 PF16187 Middle or third domain of peptidase_M16 ISX50_11410 PF00300 Histidine phosphatase superfamily (branch 1) ISX50_11415 PF01713 Smr domain ISX50_11420 PF05175 Methyltransferase small domain ISX50_11425 PF01810 LysE type translocator ISX50_11430 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ISX50_11435 PF00486 Transcriptional regulatory protein, C terminal ISX50_11435 PF00072 Response regulator receiver domain ISX50_11440 PF00512 His Kinase A (phospho-acceptor) domain ISX50_11440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_11440 PF00672 HAMP domain ISX50_11445 PF01547 Bacterial extracellular solute-binding protein ISX50_11450 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_11455 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_11460 PF00005 ABC transporter ISX50_11460 PF17912 MalK OB fold domain ISX50_11460 PF03459 TOBE domain ISX50_11465 PF01926 50S ribosome-binding GTPase ISX50_11465 PF13167 GTP-binding GTPase N-terminal ISX50_11465 PF16360 GTP-binding GTPase Middle Region ISX50_11470 PF00698 Acyl transferase domain ISX50_11470 PF03060 Nitronate monooxygenase ISX50_11475 PF00550 Phosphopantetheine attachment site ISX50_11475 PF08659 KR domain ISX50_11475 PF02801 Beta-ketoacyl synthase, C-terminal domain ISX50_11475 PF14765 Polyketide synthase dehydratase ISX50_11475 PF00109 Beta-ketoacyl synthase, N-terminal domain ISX50_11475 PF00698 Acyl transferase domain ISX50_11475 PF16197 Ketoacyl-synthetase C-terminal extension ISX50_11485 PF00698 Acyl transferase domain ISX50_11485 PF00550 Phosphopantetheine attachment site ISX50_11485 PF08659 KR domain ISX50_11485 PF02801 Beta-ketoacyl synthase, C-terminal domain ISX50_11485 PF00109 Beta-ketoacyl synthase, N-terminal domain ISX50_11485 PF16197 Ketoacyl-synthetase C-terminal extension ISX50_11485 PF14765 Polyketide synthase dehydratase ISX50_11490 PF01648 4'-phosphopantetheinyl transferase superfamily ISX50_11500 PF03480 Bacterial extracellular solute-binding protein, family 7 ISX50_11505 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ISX50_11510 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ISX50_11520 PF00072 Response regulator receiver domain ISX50_11520 PF00158 Sigma-54 interaction domain ISX50_11520 PF02954 Bacterial regulatory protein, Fis family ISX50_11525 PF02743 Cache domain ISX50_11525 PF00512 His Kinase A (phospho-acceptor) domain ISX50_11525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_11535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISX50_11535 PF05698 Bacterial trigger factor protein (TF) C-terminus ISX50_11535 PF05697 Bacterial trigger factor protein (TF) ISX50_11540 PF00574 Clp protease ISX50_11545 PF07724 AAA domain (Cdc48 subfamily) ISX50_11545 PF10431 C-terminal, D2-small domain, of ClpB protein ISX50_11545 PF06689 ClpX C4-type zinc finger ISX50_11550 PF00004 ATPase family associated with various cellular activities (AAA) ISX50_11550 PF05362 Lon protease (S16) C-terminal proteolytic domain ISX50_11550 PF02190 ATP-dependent protease La (LON) substrate-binding domain ISX50_11555 PF00216 Bacterial DNA-binding protein ISX50_11560 PF13145 PPIC-type PPIASE domain ISX50_11565 PF17674 HHH domain ISX50_11565 PF00575 S1 RNA binding domain ISX50_11565 PF09371 Tex-like protein N-terminal domain ISX50_11565 PF16921 Tex protein YqgF-like domain ISX50_11580 PF13286 Phosphohydrolase-associated domain ISX50_11580 PF01966 HD domain ISX50_11590 PF00155 Aminotransferase class I and II ISX50_11595 PF00425 chorismate binding enzyme ISX50_11600 PF16582 Middle domain of thiamine pyrophosphate ISX50_11600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISX50_11600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISX50_11605 PF00561 alpha/beta hydrolase fold ISX50_11610 PF00378 Enoyl-CoA hydratase/isomerase ISX50_11615 PF13378 Enolase C-terminal domain-like ISX50_11620 PF00501 AMP-binding enzyme ISX50_11620 PF13193 AMP-binding enzyme C-terminal domain ISX50_11630 PF03601 Conserved hypothetical protein 698 ISX50_11635 PF07690 Major Facilitator Superfamily ISX50_11685 PF13533 Biotin-lipoyl like ISX50_11690 PF00873 AcrB/AcrD/AcrF family ISX50_11700 PF00465 Iron-containing alcohol dehydrogenase ISX50_11705 PF00171 Aldehyde dehydrogenase family ISX50_11720 PF00884 Sulfatase ISX50_11725 PF04055 Radical SAM superfamily ISX50_11725 PF13186 Iron-sulfur cluster-binding domain ISX50_11735 PF16925 Tetracyclin repressor-like, C-terminal domain ISX50_11735 PF00440 Bacterial regulatory proteins, tetR family ISX50_11775 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ISX50_11780 PF00291 Pyridoxal-phosphate dependent enzyme ISX50_11785 PF13404 AsnC-type helix-turn-helix domain ISX50_11785 PF01037 Lrp/AsnC ligand binding domain ISX50_11800 PF09619 Type III secretion system lipoprotein chaperone (YscW) ISX50_11805 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ISX50_11820 PF03425 Carbohydrate binding domain (family 11) ISX50_11820 PF00150 Cellulase (glycosyl hydrolase family 5) ISX50_11820 PF00404 Dockerin type I domain ISX50_11820 PF02156 Glycosyl hydrolase family 26 ISX50_11825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_11825 PF03466 LysR substrate binding domain ISX50_11830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_11830 PF03466 LysR substrate binding domain ISX50_11850 PF12697 Alpha/beta hydrolase family ISX50_11860 PF03466 LysR substrate binding domain ISX50_11860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_11865 PF00106 short chain dehydrogenase ISX50_11870 PF12706 Beta-lactamase superfamily domain ISX50_11905 PF01693 Caulimovirus viroplasmin ISX50_11910 PF13439 Glycosyltransferase Family 4 ISX50_11910 PF00534 Glycosyl transferases group 1 ISX50_11915 PF00535 Glycosyl transferase family 2 ISX50_11945 PF00255 Glutathione peroxidase ISX50_11950 PF03109 ABC1 family ISX50_11965 PF09278 MerR, DNA binding ISX50_11965 PF00376 MerR family regulatory protein ISX50_11970 PF04794 YdjC-like protein ISX50_11980 PF03466 LysR substrate binding domain ISX50_11980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_12010 PF00884 Sulfatase ISX50_12015 PF00356 Bacterial regulatory proteins, lacI family ISX50_12020 PF01609 Transposase DDE domain ISX50_12020 PF13006 Insertion element 4 transposase N-terminal ISX50_12040 PF00474 Sodium:solute symporter family ISX50_12045 PF03313 Serine dehydratase alpha chain ISX50_12045 PF03315 Serine dehydratase beta chain ISX50_12050 PF01037 Lrp/AsnC ligand binding domain ISX50_12055 PF01810 LysE type translocator ISX50_12060 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_12060 PF13192 Thioredoxin domain ISX50_12065 PF10417 C-terminal domain of 1-Cys peroxiredoxin ISX50_12065 PF00578 AhpC/TSA family ISX50_12080 PF12833 Helix-turn-helix domain ISX50_12090 PF00860 Permease family ISX50_12095 PF03330 Lytic transglycolase ISX50_12095 PF05036 Sporulation related domain ISX50_12100 PF01368 DHH family ISX50_12100 PF02833 DHHA2 domain ISX50_12120 PF00583 Acetyltransferase (GNAT) family ISX50_12125 PF00440 Bacterial regulatory proteins, tetR family ISX50_12125 PF08361 MAATS-type transcriptional repressor, C-terminal region ISX50_12130 PF12833 Helix-turn-helix domain ISX50_12130 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ISX50_12165 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_12165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISX50_12170 PF00375 Sodium:dicarboxylate symporter family ISX50_12175 PF01979 Amidohydrolase family ISX50_12190 PF01979 Amidohydrolase family ISX50_12200 PF02311 AraC-like ligand binding domain ISX50_12200 PF12833 Helix-turn-helix domain ISX50_12205 PF08212 Lipocalin-like domain ISX50_12210 PF01292 Prokaryotic cytochrome b561 ISX50_12220 PF08803 Putative mono-oxygenase ydhR ISX50_12225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_12225 PF03466 LysR substrate binding domain ISX50_12230 PF00440 Bacterial regulatory proteins, tetR family ISX50_12230 PF17932 Tetracyclin repressor-like, C-terminal domain ISX50_12240 PF00873 AcrB/AcrD/AcrF family ISX50_12245 PF06481 COX Aromatic Rich Motif ISX50_12245 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ISX50_12250 PF00115 Cytochrome C and Quinol oxidase polypeptide I ISX50_12255 PF00510 Cytochrome c oxidase subunit III ISX50_12260 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ISX50_12265 PF01040 UbiA prenyltransferase family ISX50_12270 PF10502 Signal peptidase, peptidase S26 ISX50_12285 PF14864 Alkyl sulfatase C-terminal ISX50_12285 PF14863 Alkyl sulfatase dimerisation ISX50_12285 PF00753 Metallo-beta-lactamase superfamily ISX50_12305 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ISX50_12310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_12310 PF03466 LysR substrate binding domain ISX50_12315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ISX50_12320 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ISX50_12350 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ISX50_12360 PF00591 Glycosyl transferase family, a/b domain ISX50_12360 PF02885 Glycosyl transferase family, helical bundle domain ISX50_12375 PF00571 CBS domain ISX50_12375 PF01743 Poly A polymerase head domain ISX50_12380 PF01554 MatE ISX50_12385 PF00403 Heavy-metal-associated domain ISX50_12390 PF01048 Phosphorylase superfamily ISX50_12400 PF00672 HAMP domain ISX50_12400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_12405 PF01230 HIT domain ISX50_12420 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ISX50_12420 PF13036 Peptidoglycan-synthase activator LpoB ISX50_12430 PF05728 Uncharacterised protein family (UPF0227) ISX50_12435 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_12450 PF17757 UvrB interaction domain ISX50_12450 PF02559 CarD-like/TRCF domain ISX50_12450 PF00271 Helicase conserved C-terminal domain ISX50_12450 PF00270 DEAD/DEAH box helicase ISX50_12450 PF03461 TRCF domain ISX50_12460 PF12704 MacB-like periplasmic core domain ISX50_12460 PF02687 FtsX-like permease family ISX50_12465 PF00005 ABC transporter ISX50_12470 PF02687 FtsX-like permease family ISX50_12470 PF12704 MacB-like periplasmic core domain ISX50_12480 PF00753 Metallo-beta-lactamase superfamily ISX50_12480 PF03772 Competence protein ISX50_12485 PF00005 ABC transporter ISX50_12485 PF00664 ABC transporter transmembrane region ISX50_12490 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ISX50_12495 PF03966 Trm112p-like protein ISX50_12500 PF02348 Cytidylyltransferase ISX50_12505 PF02224 Cytidylate kinase ISX50_12510 PF00575 S1 RNA binding domain ISX50_12515 PF00216 Bacterial DNA-binding protein ISX50_12520 PF06305 Lipopolysaccharide assembly protein A domain ISX50_12525 PF18073 Rubredoxin metal binding domain ISX50_12530 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ISX50_12535 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) ISX50_12545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_12545 PF03466 LysR substrate binding domain ISX50_12560 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ISX50_12560 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ISX50_12565 PF01037 Lrp/AsnC ligand binding domain ISX50_12570 PF01580 FtsK/SpoIIIE family ISX50_12570 PF17854 FtsK alpha domain ISX50_12570 PF09397 Ftsk gamma domain ISX50_12570 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ISX50_12575 PF03548 Outer membrane lipoprotein carrier protein LolA ISX50_12580 PF00004 ATPase family associated with various cellular activities (AAA) ISX50_12580 PF16193 AAA C-terminal domain ISX50_12580 PF12002 MgsA AAA+ ATPase C terminal ISX50_12585 PF02403 Seryl-tRNA synthetase N-terminal domain ISX50_12585 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ISX50_12590 PF00072 Response regulator receiver domain ISX50_12595 PF00990 Diguanylate cyclase, GGDEF domain ISX50_12595 PF00563 EAL domain ISX50_12595 PF03707 Bacterial signalling protein N terminal repeat ISX50_12600 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISX50_12600 PF00072 Response regulator receiver domain ISX50_12600 PF00989 PAS fold ISX50_12600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_12600 PF00512 His Kinase A (phospho-acceptor) domain ISX50_12600 PF01627 Hpt domain ISX50_12605 PF00202 Aminotransferase class-III ISX50_12610 PF06968 Biotin and Thiamin Synthesis associated domain ISX50_12610 PF04055 Radical SAM superfamily ISX50_12615 PF00155 Aminotransferase class I and II ISX50_12620 PF08241 Methyltransferase domain ISX50_12635 PF01435 Peptidase family M48 ISX50_12640 PF00206 Lyase ISX50_12640 PF08328 Adenylosuccinate lyase C-terminal ISX50_12645 PF04356 Protein of unknown function (DUF489) ISX50_12660 PF00294 pfkB family carbohydrate kinase ISX50_12665 PF00816 H-NS histone family ISX50_12670 PF03553 Na+/H+ antiporter family ISX50_12675 PF01634 ATP phosphoribosyltransferase ISX50_12675 PF08029 HisG, C-terminal domain ISX50_12680 PF00815 Histidinol dehydrogenase ISX50_12685 PF00155 Aminotransferase class I and II ISX50_12690 PF00475 Imidazoleglycerol-phosphate dehydratase ISX50_12690 PF08645 Polynucleotide kinase 3 phosphatase ISX50_12695 PF00117 Glutamine amidotransferase class-I ISX50_12700 PF00977 Histidine biosynthesis protein ISX50_12705 PF00977 Histidine biosynthesis protein ISX50_12710 PF01502 Phosphoribosyl-AMP cyclohydrolase ISX50_12710 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ISX50_12715 PF02810 SEC-C motif ISX50_12720 PF08668 HDOD domain ISX50_12720 PF00563 EAL domain ISX50_12725 PF00149 Calcineurin-like phosphoesterase ISX50_12730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ISX50_12735 PF01406 tRNA synthetases class I (C) catalytic domain ISX50_12735 PF09190 DALR domain ISX50_12740 PF00265 Thymidine kinase ISX50_12765 PF01226 Formate/nitrite transporter ISX50_12770 PF03649 Uncharacterised protein family (UPF0014) ISX50_12775 PF06796 Periplasmic nitrate reductase protein NapE ISX50_12780 PF03264 NapC/NirT cytochrome c family, N-terminal region ISX50_12785 PF01568 Molydopterin dinucleotide binding domain ISX50_12785 PF00384 Molybdopterin oxidoreductase ISX50_12785 PF18364 Molybdopterin oxidoreductase N-terminal domain ISX50_12795 PF01368 DHH family ISX50_12795 PF02833 DHHA2 domain ISX50_12810 PF00005 ABC transporter ISX50_12815 PF00005 ABC transporter ISX50_12815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISX50_12820 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_12820 PF12911 N-terminal TM domain of oligopeptide transport permease C ISX50_12825 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_12830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISX50_12835 PF02954 Bacterial regulatory protein, Fis family ISX50_12835 PF00158 Sigma-54 interaction domain ISX50_12840 PF04012 PspA/IM30 family ISX50_12845 PF06667 Phage shock protein B ISX50_12850 PF04024 PspC domain ISX50_12855 PF00529 HlyD membrane-fusion protein of T1SS ISX50_12855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISX50_12860 PF13533 Biotin-lipoyl like ISX50_12865 PF00873 AcrB/AcrD/AcrF family ISX50_12870 PF03352 Methyladenine glycosylase ISX50_12885 PF01053 Cys/Met metabolism PLP-dependent enzyme ISX50_12890 PF13091 PLD-like domain ISX50_12890 PF13396 Phospholipase_D-nuclease N-terminal ISX50_12895 PF00209 Sodium:neurotransmitter symporter family ISX50_12900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_12900 PF00672 HAMP domain ISX50_12900 PF12729 Four helix bundle sensory module for signal transduction ISX50_12905 PF00849 RNA pseudouridylate synthase ISX50_12910 PF10672 S-adenosylmethionine-dependent methyltransferase ISX50_12910 PF02926 THUMP domain ISX50_12910 PF01170 Putative RNA methylase family UPF0020 ISX50_12915 PF01066 CDP-alcohol phosphatidyltransferase ISX50_12920 PF00005 ABC transporter ISX50_12925 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_12930 PF13416 Bacterial extracellular solute-binding protein ISX50_12940 PF06945 Protein of unknown function (DUF1289) ISX50_12950 PF01910 Thiamine-binding protein ISX50_12960 PF00270 DEAD/DEAH box helicase ISX50_12960 PF00271 Helicase conserved C-terminal domain ISX50_12965 PF01810 LysE type translocator ISX50_12975 PF00246 Zinc carboxypeptidase ISX50_12975 PF18027 Cytosolic carboxypeptidase N-terminal domain ISX50_12995 PF00571 CBS domain ISX50_12995 PF00005 ABC transporter ISX50_13000 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_13005 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ISX50_13015 PF03466 LysR substrate binding domain ISX50_13015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_13020 PF04403 Paraquat-inducible protein A ISX50_13025 PF02470 MlaD protein ISX50_13070 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_13075 PF00005 ABC transporter ISX50_13075 PF08402 TOBE domain ISX50_13085 PF00459 Inositol monophosphatase family ISX50_13095 PF00356 Bacterial regulatory proteins, lacI family ISX50_13105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_13105 PF03466 LysR substrate binding domain ISX50_13120 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISX50_13125 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_13130 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_13135 PF00005 ABC transporter ISX50_13140 PF01418 Helix-turn-helix domain, rpiR family ISX50_13140 PF01380 SIS domain ISX50_13145 PF01425 Amidase ISX50_13155 PF00266 Aminotransferase class-V ISX50_13160 PF07687 Peptidase dimerisation domain ISX50_13160 PF01546 Peptidase family M20/M25/M40 ISX50_13170 PF02417 Chromate transporter ISX50_13175 PF02417 Chromate transporter ISX50_13190 PF01386 Ribosomal L25p family ISX50_13195 PF00535 Glycosyl transferase family 2 ISX50_13195 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 ISX50_13200 PF09335 SNARE associated Golgi protein ISX50_13210 PF00512 His Kinase A (phospho-acceptor) domain ISX50_13210 PF00672 HAMP domain ISX50_13210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_13215 PF00486 Transcriptional regulatory protein, C terminal ISX50_13215 PF00072 Response regulator receiver domain ISX50_13225 PF00271 Helicase conserved C-terminal domain ISX50_13225 PF04851 Type III restriction enzyme, res subunit ISX50_13230 PF01479 S4 domain ISX50_13230 PF00849 RNA pseudouridylate synthase ISX50_13235 PF07690 Major Facilitator Superfamily ISX50_13245 PF11066 Protein of unknown function (DUF2867) ISX50_13245 PF13460 NAD(P)H-binding ISX50_13250 PF01554 MatE ISX50_13255 PF00005 ABC transporter ISX50_13270 PF06965 Na+/H+ antiporter 1 ISX50_13275 PF05736 OprF membrane domain ISX50_13275 PF00691 OmpA family ISX50_13285 PF00440 Bacterial regulatory proteins, tetR family ISX50_13285 PF16295 Tetracyclin repressor-like, C-terminal domain ISX50_13290 PF02770 Acyl-CoA dehydrogenase, middle domain ISX50_13290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ISX50_13290 PF09317 Domain of unknown function (DUF1974) ISX50_13290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ISX50_13295 PF07055 Enoyl reductase FAD binding domain ISX50_13295 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ISX50_13295 PF12241 Trans-2-enoyl-CoA reductase catalytic region ISX50_13300 PF06826 Predicted Permease Membrane Region ISX50_13300 PF02080 TrkA-C domain ISX50_13305 PF00462 Glutaredoxin ISX50_13310 PF00465 Iron-containing alcohol dehydrogenase ISX50_13315 PF01380 SIS domain ISX50_13315 PF01418 Helix-turn-helix domain, rpiR family ISX50_13320 PF00282 Pyridoxal-dependent decarboxylase conserved domain ISX50_13330 PF03956 Lysine exporter LysO ISX50_13340 PF04994 TfoX C-terminal domain ISX50_13340 PF04993 TfoX N-terminal domain ISX50_13350 PF00158 Sigma-54 interaction domain ISX50_13350 PF02954 Bacterial regulatory protein, Fis family ISX50_13350 PF00072 Response regulator receiver domain ISX50_13355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_13355 PF00512 His Kinase A (phospho-acceptor) domain ISX50_13355 PF00989 PAS fold ISX50_13365 PF00266 Aminotransferase class-V ISX50_13395 PF00155 Aminotransferase class I and II ISX50_13400 PF01966 HD domain ISX50_13400 PF00672 HAMP domain ISX50_13410 PF00392 Bacterial regulatory proteins, gntR family ISX50_13410 PF00155 Aminotransferase class I and II ISX50_13420 PF01336 OB-fold nucleic acid binding domain ISX50_13420 PF00152 tRNA synthetases class II (D, K and N) ISX50_13430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_13430 PF00672 HAMP domain ISX50_13430 PF12729 Four helix bundle sensory module for signal transduction ISX50_13440 PF03222 Tryptophan/tyrosine permease family ISX50_13445 PF03315 Serine dehydratase beta chain ISX50_13445 PF03313 Serine dehydratase alpha chain ISX50_13450 PF03222 Tryptophan/tyrosine permease family ISX50_13455 PF00293 NUDIX domain ISX50_13465 PF09308 LuxQ, periplasmic ISX50_13465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_13465 PF00512 His Kinase A (phospho-acceptor) domain ISX50_13465 PF00072 Response regulator receiver domain ISX50_13470 PF04715 Anthranilate synthase component I, N terminal region ISX50_13470 PF00425 chorismate binding enzyme ISX50_13485 PF04317 YcjX-like family, DUF463 ISX50_13490 PF05128 Domain of unknown function (DUF697) ISX50_13500 PF18024 Helix-turn-helix domain ISX50_13500 PF00158 Sigma-54 interaction domain ISX50_13505 PF13302 Acetyltransferase (GNAT) domain ISX50_13520 PF00012 Hsp70 protein ISX50_13525 PF00012 Hsp70 protein ISX50_13535 PF00990 Diguanylate cyclase, GGDEF domain ISX50_13545 PF13006 Insertion element 4 transposase N-terminal ISX50_13545 PF01609 Transposase DDE domain ISX50_13570 PF00486 Transcriptional regulatory protein, C terminal ISX50_13600 PF00271 Helicase conserved C-terminal domain ISX50_13600 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ISX50_13600 PF11898 Domain of unknown function (DUF3418) ISX50_13600 PF04408 Helicase associated domain (HA2) ISX50_13600 PF00270 DEAD/DEAH box helicase ISX50_13640 PF01409 tRNA synthetases class II core domain (F) ISX50_13640 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ISX50_13645 PF03147 Ferredoxin-fold anticodon binding domain ISX50_13645 PF01588 Putative tRNA binding domain ISX50_13645 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ISX50_13645 PF03484 tRNA synthetase B5 domain ISX50_13645 PF03483 B3/4 domain ISX50_13660 PF00561 alpha/beta hydrolase fold ISX50_13705 PF01227 GTP cyclohydrolase I ISX50_13710 PF02152 Dihydroneopterin aldolase ISX50_13715 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ISX50_13725 PF01734 Patatin-like phospholipase ISX50_13735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_13735 PF00512 His Kinase A (phospho-acceptor) domain ISX50_13735 PF09308 LuxQ, periplasmic ISX50_13735 PF00072 Response regulator receiver domain ISX50_13755 PF03180 NLPA lipoprotein ISX50_13760 PF01738 Dienelactone hydrolase family ISX50_13765 PF01037 Lrp/AsnC ligand binding domain ISX50_13790 PF00072 Response regulator receiver domain ISX50_13790 PF00990 Diguanylate cyclase, GGDEF domain ISX50_13810 PF03824 High-affinity nickel-transport protein ISX50_13835 PF00216 Bacterial DNA-binding protein ISX50_13855 PF00672 HAMP domain ISX50_13855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_13855 PF17200 Single Cache domain 2 ISX50_13865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_13865 PF03466 LysR substrate binding domain ISX50_13875 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ISX50_13880 PF00072 Response regulator receiver domain ISX50_13880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_13885 PF00155 Aminotransferase class I and II ISX50_13890 PF00155 Aminotransferase class I and II ISX50_13890 PF00392 Bacterial regulatory proteins, gntR family ISX50_13900 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ISX50_13905 PF07683 Cobalamin synthesis protein cobW C-terminal domain ISX50_13905 PF02492 CobW/HypB/UreG, nucleotide-binding domain ISX50_13910 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_13915 PF01979 Amidohydrolase family ISX50_13925 PF00216 Bacterial DNA-binding protein ISX50_13935 PF05724 Thiopurine S-methyltransferase (TPMT) ISX50_13940 PF02222 ATP-grasp domain ISX50_13945 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ISX50_13945 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ISX50_13950 PF04172 LrgB-like family ISX50_13955 PF03788 LrgA family ISX50_13960 PF00929 Exonuclease ISX50_13960 PF08411 Exonuclease C-terminal ISX50_13985 PF04116 Fatty acid hydroxylase superfamily ISX50_13995 PF12852 Cupin ISX50_13995 PF12833 Helix-turn-helix domain ISX50_14005 PF03372 Endonuclease/Exonuclease/phosphatase family ISX50_14010 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ISX50_14020 PF03466 LysR substrate binding domain ISX50_14020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_14025 PF00248 Aldo/keto reductase family ISX50_14030 PF03928 Haem-degrading ISX50_14035 PF00375 Sodium:dicarboxylate symporter family ISX50_14040 PF13460 NAD(P)H-binding ISX50_14045 PF01613 Flavin reductase like domain ISX50_14050 PF02277 Phosphoribosyltransferase ISX50_14055 PF02654 Cobalamin-5-phosphate synthase ISX50_14060 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase ISX50_14075 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ISX50_14080 PF01032 FecCD transport family ISX50_14085 PF00005 ABC transporter ISX50_14105 PF00583 Acetyltransferase (GNAT) family ISX50_14115 PF00990 Diguanylate cyclase, GGDEF domain ISX50_14125 PF07690 Major Facilitator Superfamily ISX50_14130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_14130 PF03466 LysR substrate binding domain ISX50_14140 PF01863 Protein of unknown function DUF45 ISX50_14145 PF05971 RNA methyltransferase ISX50_14155 PF04204 Homoserine O-succinyltransferase ISX50_14170 PF07687 Peptidase dimerisation domain ISX50_14170 PF01546 Peptidase family M20/M25/M40 ISX50_14175 PF00990 Diguanylate cyclase, GGDEF domain ISX50_14175 PF08448 PAS fold ISX50_14195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_14195 PF03466 LysR substrate binding domain ISX50_14215 PF04972 BON domain ISX50_14215 PF00263 Bacterial type II and III secretion system protein ISX50_14215 PF13629 Pilus formation protein N terminal region ISX50_14225 PF10609 NUBPL iron-transfer P-loop NTPase ISX50_14230 PF00437 Type II/IV secretion system protein ISX50_14265 PF00691 OmpA family ISX50_14265 PF04972 BON domain ISX50_14270 PF00990 Diguanylate cyclase, GGDEF domain ISX50_14270 PF00563 EAL domain ISX50_14270 PF08448 PAS fold ISX50_14275 PF00709 Adenylosuccinate synthetase ISX50_14290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_14290 PF00672 HAMP domain ISX50_14290 PF12729 Four helix bundle sensory module for signal transduction ISX50_14305 PF00704 Glycosyl hydrolases family 18 ISX50_14310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_14310 PF03466 LysR substrate binding domain ISX50_14315 PF07715 TonB-dependent Receptor Plug Domain ISX50_14315 PF00593 TonB dependent receptor ISX50_14320 PF13649 Methyltransferase domain ISX50_14325 PF08448 PAS fold ISX50_14325 PF00990 Diguanylate cyclase, GGDEF domain ISX50_14330 PF00583 Acetyltransferase (GNAT) family ISX50_14335 PF01810 LysE type translocator ISX50_14345 PF00149 Calcineurin-like phosphoesterase ISX50_14345 PF12320 Type 5 capsule protein repressor C-terminal domain ISX50_14350 PF13476 AAA domain ISX50_14370 PF04244 Deoxyribodipyrimidine photo-lyase-related protein ISX50_14375 PF00875 DNA photolyase ISX50_14375 PF03441 FAD binding domain of DNA photolyase ISX50_14380 PF00582 Universal stress protein family ISX50_14400 PF00005 ABC transporter ISX50_14405 PF01497 Periplasmic binding protein ISX50_14410 PF01032 FecCD transport family ISX50_14415 PF00005 ABC transporter ISX50_14420 PF03621 MbtH-like protein ISX50_14425 PF00501 AMP-binding enzyme ISX50_14425 PF00550 Phosphopantetheine attachment site ISX50_14425 PF13193 AMP-binding enzyme C-terminal domain ISX50_14425 PF00668 Condensation domain ISX50_14430 PF07993 Male sterility protein ISX50_14430 PF00501 AMP-binding enzyme ISX50_14430 PF13193 AMP-binding enzyme C-terminal domain ISX50_14430 PF00550 Phosphopantetheine attachment site ISX50_14430 PF00668 Condensation domain ISX50_14435 PF00593 TonB dependent receptor ISX50_14435 PF07715 TonB-dependent Receptor Plug Domain ISX50_14445 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ISX50_14455 PF07690 Major Facilitator Superfamily ISX50_14465 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISX50_14465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISX50_14490 PF00293 NUDIX domain ISX50_14505 PF01479 S4 domain ISX50_14505 PF00849 RNA pseudouridylate synthase ISX50_14515 PF12464 Maltose acetyltransferase ISX50_14515 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_14525 PF03737 Aldolase/RraA ISX50_14540 PF00293 NUDIX domain ISX50_14580 PF01810 LysE type translocator ISX50_14585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ISX50_14625 PF02810 SEC-C motif ISX50_14625 PF07517 SecA DEAD-like domain ISX50_14625 PF01043 SecA preprotein cross-linking domain ISX50_14625 PF07516 SecA Wing and Scaffold domain ISX50_14640 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_14670 PF03616 Sodium/glutamate symporter ISX50_14685 PF12392 Collagenase ISX50_14685 PF01136 Peptidase family U32 ISX50_14695 PF00005 ABC transporter ISX50_14695 PF00664 ABC transporter transmembrane region ISX50_14700 PF00005 ABC transporter ISX50_14705 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISX50_14710 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_14715 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_14790 PF01202 Shikimate kinase ISX50_14820 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ISX50_14830 PF02321 Outer membrane efflux protein ISX50_14835 PF00873 AcrB/AcrD/AcrF family ISX50_14845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_14845 PF03466 LysR substrate binding domain ISX50_14850 PF02397 Bacterial sugar transferase ISX50_14860 PF00534 Glycosyl transferases group 1 ISX50_14860 PF13579 Glycosyl transferase 4-like domain ISX50_14875 PF12464 Maltose acetyltransferase ISX50_14875 PF14602 Hexapeptide repeat of succinyl-transferase ISX50_14885 PF00534 Glycosyl transferases group 1 ISX50_14890 PF02954 Bacterial regulatory protein, Fis family ISX50_14890 PF00072 Response regulator receiver domain ISX50_14890 PF00158 Sigma-54 interaction domain ISX50_14900 PF00005 ABC transporter ISX50_14900 PF00571 CBS domain ISX50_14905 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_14925 PF00691 OmpA family ISX50_14925 PF01389 OmpA-like transmembrane domain ISX50_14940 PF01554 MatE ISX50_14945 PF00677 Lumazine binding domain ISX50_14955 PF03881 Fructosamine kinase ISX50_14965 PF00877 NlpC/P60 family ISX50_14970 PF12729 Four helix bundle sensory module for signal transduction ISX50_14970 PF00672 HAMP domain ISX50_14970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_14980 PF03942 DTW domain ISX50_14985 PF00480 ROK family ISX50_14995 PF03454 MoeA C-terminal region (domain IV) ISX50_14995 PF00994 Probable molybdopterin binding domain ISX50_14995 PF03453 MoeA N-terminal region (domain I and II) ISX50_15000 PF12804 MobA-like NTP transferase domain ISX50_15005 PF00005 ABC transporter ISX50_15005 PF08402 TOBE domain ISX50_15010 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_15015 PF12849 PBP superfamily domain ISX50_15020 PF00158 Sigma-54 interaction domain ISX50_15020 PF00072 Response regulator receiver domain ISX50_15020 PF02954 Bacterial regulatory protein, Fis family ISX50_15025 PF00512 His Kinase A (phospho-acceptor) domain ISX50_15025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_15030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_15030 PF12729 Four helix bundle sensory module for signal transduction ISX50_15030 PF00672 HAMP domain ISX50_15045 PF00005 ABC transporter ISX50_15045 PF12848 ABC transporter ISX50_15050 PF02634 FdhD/NarQ family ISX50_15070 PF02613 Nitrate reductase delta subunit ISX50_15080 PF01568 Molydopterin dinucleotide binding domain ISX50_15080 PF00384 Molybdopterin oxidoreductase ISX50_15080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISX50_15085 PF13247 4Fe-4S dicluster domain ISX50_15100 PF00909 Ammonium Transporter Family ISX50_15105 PF02146 Sir2 family ISX50_15110 PF00563 EAL domain ISX50_15110 PF00990 Diguanylate cyclase, GGDEF domain ISX50_15110 PF08448 PAS fold ISX50_15115 PF13416 Bacterial extracellular solute-binding protein ISX50_15120 PF13416 Bacterial extracellular solute-binding protein ISX50_15125 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_15130 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_15135 PF00005 ABC transporter ISX50_15135 PF08402 TOBE domain ISX50_15155 PF01171 PP-loop family ISX50_15160 PF00582 Universal stress protein family ISX50_15165 PF13545 Crp-like helix-turn-helix domain ISX50_15165 PF00027 Cyclic nucleotide-binding domain ISX50_15180 PF00403 Heavy-metal-associated domain ISX50_15190 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ISX50_15190 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ISX50_15205 PF00115 Cytochrome C and Quinol oxidase polypeptide I ISX50_15220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_15220 PF00512 His Kinase A (phospho-acceptor) domain ISX50_15220 PF09308 LuxQ, periplasmic ISX50_15220 PF00072 Response regulator receiver domain ISX50_15405 PF06303 MatP N-terminal domain ISX50_15405 PF17414 MatP C-terminal ribbon-helix-helix domain ISX50_15410 PF05362 Lon protease (S16) C-terminal proteolytic domain ISX50_15410 PF13654 AAA domain ISX50_15415 PF07977 FabA-like domain ISX50_15420 PF04957 Ribosome modulation factor ISX50_15430 PF16326 ABC transporter C-terminal domain ISX50_15430 PF12848 ABC transporter ISX50_15430 PF00005 ABC transporter ISX50_15440 PF01170 Putative RNA methylase family UPF0020 ISX50_15440 PF02926 THUMP domain ISX50_15440 PF10672 S-adenosylmethionine-dependent methyltransferase ISX50_15445 PF07126 Cell-division protein ZapC ISX50_15450 PF01180 Dihydroorotate dehydrogenase ISX50_15455 PF05088 Bacterial NAD-glutamate dehydrogenase ISX50_15465 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ISX50_15465 PF11940 Domain of unknown function (DUF3458) Ig-like fold ISX50_15465 PF01433 Peptidase family M1 domain ISX50_15475 PF11818 C-terminal domain of tail specific protease (DUF3340) ISX50_15475 PF00595 PDZ domain ISX50_15475 PF17804 Tail specific protease N-terminal domain ISX50_15475 PF03572 Peptidase family S41 ISX50_15480 PF17516 ProQ C-terminal domain ISX50_15480 PF04352 ProQ/FINO family ISX50_15485 PF13185 GAF domain ISX50_15490 PF00005 ABC transporter ISX50_15490 PF00664 ABC transporter transmembrane region ISX50_15495 PF04403 Paraquat-inducible protein A ISX50_15500 PF02470 MlaD protein ISX50_15505 PF01189 16S rRNA methyltransferase RsmB/F ISX50_15505 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF ISX50_15505 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF ISX50_15510 PF17783 CvfB-like winged helix domain ISX50_15510 PF13509 S1 domain ISX50_15525 PF02896 PEP-utilising enzyme, TIM barrel domain ISX50_15525 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ISX50_15525 PF00391 PEP-utilising enzyme, mobile domain ISX50_15530 PF00793 DAHP synthetase I family ISX50_15535 PF04461 Protein of unknown function (DUF520) ISX50_15540 PF10414 Sirohaem synthase dimerisation region ISX50_15540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ISX50_15540 PF14824 Sirohaem biosynthesis protein central ISX50_15545 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISX50_15550 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_15555 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_15560 PF00005 ABC transporter ISX50_15565 PF01027 Inhibitor of apoptosis-promoting Bax1 ISX50_15570 PF04358 DsrC like protein ISX50_15575 PF00708 Acylphosphatase ISX50_15580 PF12729 Four helix bundle sensory module for signal transduction ISX50_15580 PF00672 HAMP domain ISX50_15580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_15585 PF10672 S-adenosylmethionine-dependent methyltransferase ISX50_15585 PF17785 PUA-like domain ISX50_15640 PF00589 Phage integrase family ISX50_15650 PF00239 Resolvase, N terminal domain ISX50_15650 PF02796 Helix-turn-helix domain of resolvase ISX50_15655 PF11398 Protein of unknown function (DUF2813) ISX50_15665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISX50_15665 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_15670 PF00375 Sodium:dicarboxylate symporter family ISX50_15675 PF01042 Endoribonuclease L-PSP ISX50_15680 PF13309 HTH domain ISX50_15680 PF08348 YheO-like PAS domain ISX50_15690 PF00005 ABC transporter ISX50_15700 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_15705 PF07702 UTRA domain ISX50_15705 PF00392 Bacterial regulatory proteins, gntR family ISX50_15710 PF06754 Phosphonate metabolism protein PhnG ISX50_15715 PF05845 Bacterial phosphonate metabolism protein (PhnH) ISX50_15720 PF05861 Bacterial phosphonate metabolism protein (PhnI) ISX50_15725 PF06007 Phosphonate metabolism protein PhnJ ISX50_15730 PF00005 ABC transporter ISX50_15735 PF00005 ABC transporter ISX50_15740 PF07969 Amidohydrolase family ISX50_15750 PF12706 Beta-lactamase superfamily domain ISX50_15755 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_15760 PF01554 MatE ISX50_15770 PF00144 Beta-lactamase ISX50_15780 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ISX50_15780 PF02896 PEP-utilising enzyme, TIM barrel domain ISX50_15780 PF00391 PEP-utilising enzyme, mobile domain ISX50_15785 PF03618 Kinase/pyrophosphorylase ISX50_15790 PF13417 Glutathione S-transferase, N-terminal domain ISX50_15790 PF04399 Glutaredoxin 2, C terminal domain ISX50_15800 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ISX50_15820 PF03009 Glycerophosphoryl diester phosphodiesterase family ISX50_15825 PF17912 MalK OB fold domain ISX50_15825 PF00005 ABC transporter ISX50_15830 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_15835 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_15840 PF13416 Bacterial extracellular solute-binding protein ISX50_15855 PF18030 RimK PreATP-grasp domain ISX50_15855 PF08443 RimK-like ATP-grasp domain ISX50_15860 PF18030 RimK PreATP-grasp domain ISX50_15860 PF08443 RimK-like ATP-grasp domain ISX50_15870 PF12706 Beta-lactamase superfamily domain ISX50_15900 PF12833 Helix-turn-helix domain ISX50_15900 PF02311 AraC-like ligand binding domain ISX50_15910 PF07690 Major Facilitator Superfamily ISX50_15920 PF00849 RNA pseudouridylate synthase ISX50_15945 PF00005 ABC transporter ISX50_15950 PF07729 FCD domain ISX50_15950 PF00392 Bacterial regulatory proteins, gntR family ISX50_15955 PF08448 PAS fold ISX50_15955 PF00990 Diguanylate cyclase, GGDEF domain ISX50_15955 PF00563 EAL domain ISX50_15955 PF08447 PAS fold ISX50_15965 PF00563 EAL domain ISX50_15965 PF00990 Diguanylate cyclase, GGDEF domain ISX50_15965 PF13426 PAS domain ISX50_15975 PF00486 Transcriptional regulatory protein, C terminal ISX50_15975 PF00072 Response regulator receiver domain ISX50_15980 PF00672 HAMP domain ISX50_15980 PF00512 His Kinase A (phospho-acceptor) domain ISX50_15980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_15980 PF16527 Two-component sensor protein CpxA, periplasmic domain ISX50_15985 PF13302 Acetyltransferase (GNAT) domain ISX50_15990 PF01966 HD domain ISX50_15995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISX50_16000 PF03611 PTS system sugar-specific permease component ISX50_16005 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISX50_16015 PF01773 Na+ dependent nucleoside transporter N-terminus ISX50_16015 PF07670 Nucleoside recognition ISX50_16015 PF07662 Na+ dependent nucleoside transporter C-terminus ISX50_16025 PF02321 Outer membrane efflux protein ISX50_16035 PF00873 AcrB/AcrD/AcrF family ISX50_16040 PF00486 Transcriptional regulatory protein, C terminal ISX50_16040 PF00072 Response regulator receiver domain ISX50_16045 PF00512 His Kinase A (phospho-acceptor) domain ISX50_16045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_16045 PF00672 HAMP domain ISX50_16065 PF00563 EAL domain ISX50_16065 PF00990 Diguanylate cyclase, GGDEF domain ISX50_16065 PF03707 Bacterial signalling protein N terminal repeat ISX50_16070 PF00271 Helicase conserved C-terminal domain ISX50_16070 PF00270 DEAD/DEAH box helicase ISX50_16085 PF00990 Diguanylate cyclase, GGDEF domain ISX50_16090 PF00313 'Cold-shock' DNA-binding domain ISX50_16095 PF07969 Amidohydrolase family ISX50_16100 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ISX50_16115 PF12833 Helix-turn-helix domain ISX50_16120 PF03253 Urea transporter ISX50_16130 PF00392 Bacterial regulatory proteins, gntR family ISX50_16130 PF00155 Aminotransferase class I and II ISX50_16135 PF13520 Amino acid permease ISX50_16145 PF03466 LysR substrate binding domain ISX50_16145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_16150 PF01810 LysE type translocator ISX50_16165 PF03063 Prismane/CO dehydrogenase family ISX50_16170 PF00970 Oxidoreductase FAD-binding domain ISX50_16170 PF00175 Oxidoreductase NAD-binding domain ISX50_16170 PF00111 2Fe-2S iron-sulfur cluster binding domain ISX50_16175 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ISX50_16175 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ISX50_16180 PF00072 Response regulator receiver domain ISX50_16180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_16180 PF00512 His Kinase A (phospho-acceptor) domain ISX50_16180 PF00672 HAMP domain ISX50_16180 PF01627 Hpt domain ISX50_16180 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ISX50_16195 PF04363 Protein of unknown function (DUF496) ISX50_16205 PF04337 Protein of unknown function, DUF480 ISX50_16210 PF01541 GIY-YIG catalytic domain ISX50_16215 PF13407 Periplasmic binding protein domain ISX50_16220 PF00512 His Kinase A (phospho-acceptor) domain ISX50_16220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_16220 PF00072 Response regulator receiver domain ISX50_16220 PF09308 LuxQ, periplasmic ISX50_16240 PF00012 Hsp70 protein ISX50_16250 PF01557 Fumarylacetoacetate (FAA) hydrolase family ISX50_16255 PF01810 LysE type translocator ISX50_16260 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ISX50_16260 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ISX50_16260 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ISX50_16260 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ISX50_16265 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ISX50_16265 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ISX50_16270 PF00115 Cytochrome C and Quinol oxidase polypeptide I ISX50_16275 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 ISX50_16280 PF00510 Cytochrome c oxidase subunit III ISX50_16300 PF02628 Cytochrome oxidase assembly protein ISX50_16305 PF01040 UbiA prenyltransferase family ISX50_16310 PF18416 N-acetylglucosamine binding protein domain 2 ISX50_16310 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ISX50_16325 PF12843 Putative quorum-sensing-regulated virulence factor ISX50_16330 PF00793 DAHP synthetase I family ISX50_16340 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ISX50_16340 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ISX50_16340 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ISX50_16340 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ISX50_16345 PF01050 Mannose-6-phosphate isomerase ISX50_16345 PF00483 Nucleotidyl transferase ISX50_16350 PF00924 Mechanosensitive ion channel ISX50_16355 PF02254 TrkA-N domain ISX50_16355 PF02080 TrkA-C domain ISX50_16360 PF02386 Cation transport protein ISX50_16365 PF01641 SelR domain ISX50_16365 PF01625 Peptide methionine sulfoxide reductase ISX50_16370 PF02566 OsmC-like protein ISX50_16375 PF13488 Glycine zipper ISX50_16375 PF00691 OmpA family ISX50_16380 PF13419 Haloacid dehalogenase-like hydrolase ISX50_16385 PF00202 Aminotransferase class-III ISX50_16390 PF00266 Aminotransferase class-V ISX50_16400 PF01266 FAD dependent oxidoreductase ISX50_16405 PF00005 ABC transporter ISX50_16410 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_16415 PF00392 Bacterial regulatory proteins, gntR family ISX50_16415 PF07702 UTRA domain ISX50_16425 PF08021 Siderophore-interacting FAD-binding domain ISX50_16425 PF04954 Siderophore-interacting protein ISX50_16430 PF00854 POT family ISX50_16435 PF03315 Serine dehydratase beta chain ISX50_16435 PF03313 Serine dehydratase alpha chain ISX50_16455 PF08264 Anticodon-binding domain of tRNA ISX50_16455 PF00133 tRNA synthetases class I (I, L, M and V) ISX50_16460 PF00005 ABC transporter ISX50_16460 PF00664 ABC transporter transmembrane region ISX50_16465 PF00005 ABC transporter ISX50_16465 PF00664 ABC transporter transmembrane region ISX50_16490 PF08525 Opacity-associated protein A N-terminal motif ISX50_16490 PF01551 Peptidase family M23 ISX50_16490 PF01476 LysM domain ISX50_16495 PF01906 Putative heavy-metal-binding ISX50_16500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_16500 PF03466 LysR substrate binding domain ISX50_16510 PF01966 HD domain ISX50_16535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ISX50_16540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_16540 PF03466 LysR substrate binding domain ISX50_16550 PF00563 EAL domain ISX50_16550 PF17153 Periplasmic sensor domain, extracellular ISX50_16555 PF00155 Aminotransferase class I and II ISX50_16560 PF00107 Zinc-binding dehydrogenase ISX50_16560 PF08240 Alcohol dehydrogenase GroES-like domain ISX50_16575 PF00999 Sodium/hydrogen exchanger family ISX50_16575 PF02254 TrkA-N domain ISX50_16580 PF02525 Flavodoxin-like fold ISX50_16610 PF00465 Iron-containing alcohol dehydrogenase ISX50_16615 PF13419 Haloacid dehalogenase-like hydrolase ISX50_16620 PF00892 EamA-like transporter family ISX50_16635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_16635 PF03466 LysR substrate binding domain ISX50_16645 PF11230 Protein of unknown function (DUF3029) ISX50_16650 PF04055 Radical SAM superfamily ISX50_16655 PF03466 LysR substrate binding domain ISX50_16655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_16675 PF12805 FUSC-like inner membrane protein yccS ISX50_16680 PF13361 UvrD-like helicase C-terminal domain ISX50_16680 PF12462 DNA helicase IV / RNA helicase N terminal ISX50_16680 PF00580 UvrD/REP helicase N-terminal domain ISX50_16690 PF02142 MGS-like domain ISX50_16695 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISX50_16700 PF00989 PAS fold ISX50_16700 PF00072 Response regulator receiver domain ISX50_16700 PF01627 Hpt domain ISX50_16700 PF00512 His Kinase A (phospho-acceptor) domain ISX50_16700 PF18415 Histidine kinase receptor ArcB trans-membrane domain ISX50_16700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_16730 PF18081 Fanconi anemia-associated nuclease SAP domain ISX50_16730 PF08774 VRR-NUC domain ISX50_16735 PF07690 Major Facilitator Superfamily ISX50_16745 PF01844 HNH endonuclease ISX50_16750 PF02798 Glutathione S-transferase, N-terminal domain ISX50_16755 PF13402 Peptidase M60, enhancin and enhancin-like ISX50_16755 PF13322 Domain of unknown function (DUF4092) ISX50_16755 PF17291 N-terminal domain of M60-like peptidases ISX50_16765 PF02378 Phosphotransferase system, EIIC ISX50_16765 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISX50_16770 PF00294 pfkB family carbohydrate kinase ISX50_16775 PF00381 PTS HPr component phosphorylation site ISX50_16775 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISX50_16780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISX50_16780 PF00356 Bacterial regulatory proteins, lacI family ISX50_16785 PF03793 PASTA domain ISX50_16785 PF00069 Protein kinase domain ISX50_16790 PF07690 Major Facilitator Superfamily ISX50_16800 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ISX50_16800 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_16800 PF04324 BFD-like [2Fe-2S] binding domain ISX50_16800 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ISX50_16800 PF18267 Rubredoxin NAD+ reductase C-terminal domain ISX50_16805 PF00384 Molybdopterin oxidoreductase ISX50_16805 PF01568 Molydopterin dinucleotide binding domain ISX50_16805 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISX50_16820 PF01548 Transposase ISX50_16820 PF02371 Transposase IS116/IS110/IS902 family ISX50_16855 PF03707 Bacterial signalling protein N terminal repeat ISX50_16855 PF00563 EAL domain ISX50_16855 PF00990 Diguanylate cyclase, GGDEF domain ISX50_16875 PF00795 Carbon-nitrogen hydrolase ISX50_16880 PF00512 His Kinase A (phospho-acceptor) domain ISX50_16880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_16880 PF00072 Response regulator receiver domain ISX50_16880 PF09308 LuxQ, periplasmic ISX50_16885 PF00356 Bacterial regulatory proteins, lacI family ISX50_16890 PF00294 pfkB family carbohydrate kinase ISX50_16895 PF13407 Periplasmic binding protein domain ISX50_16900 PF02653 Branched-chain amino acid transport system / permease component ISX50_16905 PF00005 ABC transporter ISX50_16910 PF05025 RbsD / FucU transport protein family ISX50_16930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISX50_16935 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_16940 PF12911 N-terminal TM domain of oligopeptide transport permease C ISX50_16940 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_16945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISX50_16945 PF00005 ABC transporter ISX50_16955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_16955 PF03466 LysR substrate binding domain ISX50_16965 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ISX50_16965 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ISX50_16970 PF02874 ATP synthase alpha/beta family, beta-barrel domain ISX50_16970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISX50_16975 PF00231 ATP synthase ISX50_16980 PF02874 ATP synthase alpha/beta family, beta-barrel domain ISX50_16980 PF00306 ATP synthase alpha/beta chain, C terminal domain ISX50_16980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISX50_16985 PF00213 ATP synthase delta (OSCP) subunit ISX50_16990 PF00430 ATP synthase B/B' CF(0) ISX50_16995 PF00137 ATP synthase subunit C ISX50_17000 PF00119 ATP synthase A chain ISX50_17010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_17010 PF03466 LysR substrate binding domain ISX50_17020 PF00171 Aldehyde dehydrogenase family ISX50_17030 PF02028 BCCT, betaine/carnitine/choline family transporter ISX50_17045 PF00561 alpha/beta hydrolase fold ISX50_17060 PF00034 Cytochrome c ISX50_17060 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ISX50_17070 PF00115 Cytochrome C and Quinol oxidase polypeptide I ISX50_17090 PF03707 Bacterial signalling protein N terminal repeat ISX50_17090 PF00563 EAL domain ISX50_17090 PF00990 Diguanylate cyclase, GGDEF domain ISX50_17100 PF02567 Phenazine biosynthesis-like protein ISX50_17125 PF02469 Fasciclin domain ISX50_17140 PF00962 Adenosine/AMP deaminase ISX50_17155 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ISX50_17165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_17165 PF00512 His Kinase A (phospho-acceptor) domain ISX50_17165 PF09308 LuxQ, periplasmic ISX50_17165 PF00072 Response regulator receiver domain ISX50_17170 PF03150 Di-haem cytochrome c peroxidase ISX50_17170 PF00034 Cytochrome c ISX50_17175 PF00884 Sulfatase ISX50_17180 PF00884 Sulfatase ISX50_17190 PF17863 AAA lid domain ISX50_17190 PF07726 ATPase family associated with various cellular activities (AAA) ISX50_17205 PF13519 von Willebrand factor type A domain ISX50_17220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_17220 PF03466 LysR substrate binding domain ISX50_17225 PF00781 Diacylglycerol kinase catalytic domain ISX50_17230 PF00990 Diguanylate cyclase, GGDEF domain ISX50_17230 PF03707 Bacterial signalling protein N terminal repeat ISX50_17230 PF00563 EAL domain ISX50_17240 PF13407 Periplasmic binding protein domain ISX50_17250 PF03781 Sulfatase-modifying factor enzyme 1 ISX50_17255 PF04055 Radical SAM superfamily ISX50_17255 PF13186 Iron-sulfur cluster-binding domain ISX50_17280 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ISX50_17280 PF00072 Response regulator receiver domain ISX50_17280 PF00512 His Kinase A (phospho-acceptor) domain ISX50_17280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_17280 PF00672 HAMP domain ISX50_17280 PF01627 Hpt domain ISX50_17290 PF00005 ABC transporter ISX50_17295 PF00005 ABC transporter ISX50_17295 PF00664 ABC transporter transmembrane region ISX50_17300 PF02321 Outer membrane efflux protein ISX50_17305 PF00072 Response regulator receiver domain ISX50_17305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_17310 PF13533 Biotin-lipoyl like ISX50_17330 PF04545 Sigma-70, region 4 ISX50_17330 PF04542 Sigma-70 region 2 ISX50_17330 PF04539 Sigma-70 region 3 ISX50_17330 PF00140 Sigma-70 factor, region 1.2 ISX50_17345 PF17200 Single Cache domain 2 ISX50_17345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_17345 PF00672 HAMP domain ISX50_17360 PF07690 Major Facilitator Superfamily ISX50_17365 PF13533 Biotin-lipoyl like ISX50_17370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_17370 PF03466 LysR substrate binding domain ISX50_17375 PF08787 Alginate lyase ISX50_17380 PF01161 Phosphatidylethanolamine-binding protein ISX50_17390 PF07690 Major Facilitator Superfamily ISX50_17395 PF00291 Pyridoxal-phosphate dependent enzyme ISX50_17410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ISX50_17425 PF01810 LysE type translocator ISX50_17435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_17435 PF03466 LysR substrate binding domain ISX50_17445 PF01554 MatE ISX50_17465 PF02347 Glycine cleavage system P-protein ISX50_17470 PF01597 Glycine cleavage H-protein ISX50_17475 PF00464 Serine hydroxymethyltransferase ISX50_17485 PF08669 Glycine cleavage T-protein C-terminal barrel domain ISX50_17485 PF01571 Aminomethyltransferase folate-binding domain ISX50_17505 PF00472 RF-1 domain ISX50_17510 PF13419 Haloacid dehalogenase-like hydrolase ISX50_17515 PF17158 Membrane-associated sensor, integral membrane domain ISX50_17515 PF00990 Diguanylate cyclase, GGDEF domain ISX50_17520 PF01268 Formate--tetrahydrofolate ligase ISX50_17525 PF00294 pfkB family carbohydrate kinase ISX50_17540 PF11849 Domain of unknown function (DUF3369) ISX50_17545 PF13419 Haloacid dehalogenase-like hydrolase ISX50_17550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_17550 PF00672 HAMP domain ISX50_17555 PF03222 Tryptophan/tyrosine permease family ISX50_17560 PF04336 Acyl carrier protein phosphodiesterase ISX50_17565 PF00271 Helicase conserved C-terminal domain ISX50_17565 PF00270 DEAD/DEAH box helicase ISX50_17575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISX50_17575 PF00529 HlyD membrane-fusion protein of T1SS ISX50_17580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISX50_17580 PF00529 HlyD membrane-fusion protein of T1SS ISX50_17585 PF00873 AcrB/AcrD/AcrF family ISX50_17590 PF12792 CSS motif domain associated with EAL ISX50_17590 PF00563 EAL domain ISX50_17605 PF01292 Prokaryotic cytochrome b561 ISX50_17610 PF04264 YceI-like domain ISX50_17615 PF01226 Formate/nitrite transporter ISX50_17620 PF03466 LysR substrate binding domain ISX50_17620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_17625 PF06496 Protein of unknown function (DUF1097) ISX50_17630 PF11398 Protein of unknown function (DUF2813) ISX50_17635 PF00149 Calcineurin-like phosphoesterase ISX50_17635 PF02872 5'-nucleotidase, C-terminal domain ISX50_17640 PF03741 Integral membrane protein TerC family ISX50_17655 PF00270 DEAD/DEAH box helicase ISX50_17655 PF00271 Helicase conserved C-terminal domain ISX50_17660 PF07244 Surface antigen variable number repeat ISX50_17660 PF17243 POTRA domain TamA domain 1 ISX50_17660 PF01103 Surface antigen ISX50_17665 PF01177 Asp/Glu/Hydantoin racemase ISX50_17670 PF13091 PLD-like domain ISX50_17675 PF00135 Carboxylesterase family ISX50_17690 PF00529 HlyD membrane-fusion protein of T1SS ISX50_17690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISX50_17700 PF06826 Predicted Permease Membrane Region ISX50_17700 PF02080 TrkA-C domain ISX50_17705 PF00155 Aminotransferase class I and II ISX50_17710 PF08543 Phosphomethylpyrimidine kinase ISX50_17725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_17725 PF03466 LysR substrate binding domain ISX50_17740 PF12262 Bacterial virulence factor lipase N-terminal ISX50_17745 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ISX50_17755 PF01435 Peptidase family M48 ISX50_17760 PF03061 Thioesterase superfamily ISX50_17770 PF12793 Sugar transport-related sRNA regulator N-term ISX50_17770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISX50_17775 PF00892 EamA-like transporter family ISX50_17795 PF01556 DnaJ C terminal domain ISX50_17795 PF00684 DnaJ central domain ISX50_17795 PF00226 DnaJ domain ISX50_17800 PF03717 Penicillin-binding Protein dimerisation domain ISX50_17800 PF00905 Penicillin binding protein transpeptidase domain ISX50_17810 PF00498 FHA domain ISX50_17810 PF00990 Diguanylate cyclase, GGDEF domain ISX50_17810 PF00563 EAL domain ISX50_17815 PF07055 Enoyl reductase FAD binding domain ISX50_17815 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ISX50_17815 PF12241 Trans-2-enoyl-CoA reductase catalytic region ISX50_17820 PF13472 GDSL-like Lipase/Acylhydrolase family ISX50_17825 PF00005 ABC transporter ISX50_17840 PF02626 Carboxyltransferase domain, subdomain A and B ISX50_17850 PF03746 LamB/YcsF family ISX50_17865 PF03707 Bacterial signalling protein N terminal repeat ISX50_17865 PF00563 EAL domain ISX50_17865 PF13188 PAS domain ISX50_17865 PF00990 Diguanylate cyclase, GGDEF domain ISX50_17870 PF16363 GDP-mannose 4,6 dehydratase ISX50_17875 PF04886 PT repeat ISX50_17875 PF07715 TonB-dependent Receptor Plug Domain ISX50_17875 PF00593 TonB dependent receptor ISX50_17880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_17880 PF03466 LysR substrate binding domain ISX50_17885 PF13607 Succinyl-CoA ligase like flavodoxin domain ISX50_17885 PF13380 CoA binding domain ISX50_17885 PF00583 Acetyltransferase (GNAT) family ISX50_17890 PF05036 Sporulation related domain ISX50_17895 PF07478 D-ala D-ala ligase C-terminus ISX50_17895 PF01820 D-ala D-ala ligase N-terminus ISX50_17910 PF01253 Translation initiation factor SUI1 ISX50_17945 PF03701 Uncharacterised protein family (UPF0181) ISX50_17960 PF00072 Response regulator receiver domain ISX50_17960 PF00486 Transcriptional regulatory protein, C terminal ISX50_18000 PF02796 Helix-turn-helix domain of resolvase ISX50_18000 PF00239 Resolvase, N terminal domain ISX50_18045 PF02233 NAD(P) transhydrogenase beta subunit ISX50_18050 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ISX50_18050 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ISX50_18050 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ISX50_18065 PF17158 Membrane-associated sensor, integral membrane domain ISX50_18065 PF00990 Diguanylate cyclase, GGDEF domain ISX50_18075 PF00563 EAL domain ISX50_18075 PF01590 GAF domain ISX50_18075 PF00990 Diguanylate cyclase, GGDEF domain ISX50_18075 PF00360 Phytochrome region ISX50_18085 PF03459 TOBE domain ISX50_18085 PF00005 ABC transporter ISX50_18090 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_18100 PF07685 CobB/CobQ-like glutamine amidotransferase domain ISX50_18100 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ISX50_18115 PF12848 ABC transporter ISX50_18115 PF00005 ABC transporter ISX50_18120 PF08443 RimK-like ATP-grasp domain ISX50_18120 PF18030 RimK PreATP-grasp domain ISX50_18125 PF00155 Aminotransferase class I and II ISX50_18135 PF13597 Anaerobic ribonucleoside-triphosphate reductase ISX50_18135 PF03477 ATP cone domain ISX50_18150 PF04143 Sulphur transport ISX50_18165 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ISX50_18165 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ISX50_18170 PF00085 Thioredoxin ISX50_18175 PF05199 GMC oxidoreductase ISX50_18175 PF00732 GMC oxidoreductase ISX50_18180 PF13193 AMP-binding enzyme C-terminal domain ISX50_18180 PF00501 AMP-binding enzyme ISX50_18185 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ISX50_18185 PF12833 Helix-turn-helix domain ISX50_18190 PF07690 Major Facilitator Superfamily ISX50_18210 PF01554 MatE ISX50_18215 PF11756 Nitrous oxide-stimulated promoter ISX50_18235 PF00950 ABC 3 transport family ISX50_18240 PF00005 ABC transporter ISX50_18245 PF01297 Zinc-uptake complex component A periplasmic ISX50_18290 PF02472 Biopolymer transport protein ExbD/TolR ISX50_18295 PF01618 MotA/TolQ/ExbB proton channel family ISX50_18300 PF01618 MotA/TolQ/ExbB proton channel family ISX50_18310 PF07715 TonB-dependent Receptor Plug Domain ISX50_18310 PF00593 TonB dependent receptor ISX50_18315 PF00375 Sodium:dicarboxylate symporter family ISX50_18320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_18320 PF00512 His Kinase A (phospho-acceptor) domain ISX50_18320 PF16527 Two-component sensor protein CpxA, periplasmic domain ISX50_18320 PF00672 HAMP domain ISX50_18325 PF00072 Response regulator receiver domain ISX50_18325 PF00486 Transcriptional regulatory protein, C terminal ISX50_18340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ISX50_18340 PF14824 Sirohaem biosynthesis protein central ISX50_18340 PF10414 Sirohaem synthase dimerisation region ISX50_18345 PF01226 Formate/nitrite transporter ISX50_18350 PF13806 Rieske-like [2Fe-2S] domain ISX50_18355 PF18267 Rubredoxin NAD+ reductase C-terminal domain ISX50_18355 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_18355 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ISX50_18355 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ISX50_18355 PF04324 BFD-like [2Fe-2S] binding domain ISX50_18410 PF05762 VWA domain containing CoxE-like protein ISX50_18415 PF07728 AAA domain (dynein-related subfamily) ISX50_18415 PF17868 AAA lid domain ISX50_18415 PF12592 Protein of unknown function (DUF3763) ISX50_18420 PF00293 NUDIX domain ISX50_18425 PF01212 Beta-eliminating lyase ISX50_18460 PF00196 Bacterial regulatory proteins, luxR family ISX50_18465 PF00034 Cytochrome c ISX50_18470 PF01926 50S ribosome-binding GTPase ISX50_18475 PF05230 MASE2 domain ISX50_18475 PF00990 Diguanylate cyclase, GGDEF domain ISX50_18500 PF01238 Phosphomannose isomerase type I ISX50_18505 PF02595 Glycerate kinase family ISX50_18510 PF09261 Alpha mannosidase middle domain ISX50_18510 PF01074 Glycosyl hydrolases family 38 N-terminal domain ISX50_18510 PF07748 Glycosyl hydrolases family 38 C-terminal domain ISX50_18515 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISX50_18515 PF02378 Phosphotransferase system, EIIC ISX50_18515 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISX50_18520 PF07702 UTRA domain ISX50_18520 PF00392 Bacterial regulatory proteins, gntR family ISX50_18545 PF00873 AcrB/AcrD/AcrF family ISX50_18550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISX50_18555 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ISX50_18560 PF12262 Bacterial virulence factor lipase N-terminal ISX50_18575 PF03606 C4-dicarboxylate anaerobic carrier ISX50_18580 PF00072 Response regulator receiver domain ISX50_18580 PF00196 Bacterial regulatory proteins, luxR family ISX50_18585 PF00672 HAMP domain ISX50_18585 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ISX50_18585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_18585 PF07730 Histidine kinase ISX50_18600 PF01568 Molydopterin dinucleotide binding domain ISX50_18600 PF00384 Molybdopterin oxidoreductase ISX50_18600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISX50_18605 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ISX50_18610 PF03264 NapC/NirT cytochrome c family, N-terminal region ISX50_18620 PF00561 alpha/beta hydrolase fold ISX50_18620 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ISX50_18630 PF00108 Thiolase, N-terminal domain ISX50_18630 PF02803 Thiolase, C-terminal domain ISX50_18635 PF00106 short chain dehydrogenase ISX50_18655 PF01037 Lrp/AsnC ligand binding domain ISX50_18670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_18670 PF00512 His Kinase A (phospho-acceptor) domain ISX50_18675 PF00072 Response regulator receiver domain ISX50_18675 PF00486 Transcriptional regulatory protein, C terminal ISX50_18705 PF01810 LysE type translocator ISX50_18710 PF00271 Helicase conserved C-terminal domain ISX50_18710 PF00270 DEAD/DEAH box helicase ISX50_18715 PF07683 Cobalamin synthesis protein cobW C-terminal domain ISX50_18715 PF02492 CobW/HypB/UreG, nucleotide-binding domain ISX50_18720 PF00654 Voltage gated chloride channel ISX50_18730 PF00149 Calcineurin-like phosphoesterase ISX50_18735 PF08402 TOBE domain ISX50_18735 PF00005 ABC transporter ISX50_18740 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_18745 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_18755 PF00356 Bacterial regulatory proteins, lacI family ISX50_18760 PF00970 Oxidoreductase FAD-binding domain ISX50_18760 PF00042 Globin ISX50_18760 PF00175 Oxidoreductase NAD-binding domain ISX50_18765 PF00158 Sigma-54 interaction domain ISX50_18765 PF01590 GAF domain ISX50_18775 PF04972 BON domain ISX50_18775 PF00691 OmpA family ISX50_18785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISX50_18785 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ISX50_18790 PF16925 Tetracyclin repressor-like, C-terminal domain ISX50_18790 PF00440 Bacterial regulatory proteins, tetR family ISX50_18795 PF16884 N-terminal domain of oxidoreductase ISX50_18795 PF00107 Zinc-binding dehydrogenase ISX50_18805 PF00849 RNA pseudouridylate synthase ISX50_18815 PF00768 D-alanyl-D-alanine carboxypeptidase ISX50_18815 PF07943 Penicillin-binding protein 5, C-terminal domain ISX50_18830 PF08448 PAS fold ISX50_18830 PF00990 Diguanylate cyclase, GGDEF domain ISX50_18835 PF06483 Chitinase C ISX50_18835 PF00704 Glycosyl hydrolases family 18 ISX50_18840 PF02028 BCCT, betaine/carnitine/choline family transporter ISX50_18845 PF01042 Endoribonuclease L-PSP ISX50_18850 PF04224 Protein of unknown function, DUF417 ISX50_18875 PF01042 Endoribonuclease L-PSP ISX50_18890 PF06719 AraC-type transcriptional regulator N-terminus ISX50_18890 PF12833 Helix-turn-helix domain ISX50_18895 PF00465 Iron-containing alcohol dehydrogenase ISX50_18900 PF00005 ABC transporter ISX50_18905 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_18910 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISX50_18915 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_18925 PF04886 PT repeat ISX50_18925 PF07715 TonB-dependent Receptor Plug Domain ISX50_18925 PF00593 TonB dependent receptor ISX50_18930 PF12833 Helix-turn-helix domain ISX50_18935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_18935 PF03466 LysR substrate binding domain ISX50_18940 PF01810 LysE type translocator ISX50_18970 PF08274 PhnA Zinc-Ribbon ISX50_18970 PF03831 PhnA domain ISX50_18990 PF02018 Carbohydrate binding domain ISX50_18990 PF02927 Cellulase N-terminal ig-like domain ISX50_18990 PF00759 Glycosyl hydrolase family 9 ISX50_18990 PF00404 Dockerin type I domain ISX50_19010 PF00873 AcrB/AcrD/AcrF family ISX50_19035 PF00529 HlyD membrane-fusion protein of T1SS ISX50_19040 PF00664 ABC transporter transmembrane region ISX50_19040 PF00005 ABC transporter ISX50_19045 PF00664 ABC transporter transmembrane region ISX50_19045 PF00005 ABC transporter ISX50_19050 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_19055 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ISX50_19055 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_19065 PF18500 CadC C-terminal domain 1 ISX50_19065 PF00486 Transcriptional regulatory protein, C terminal ISX50_19070 PF02253 Phospholipase A1 ISX50_19080 PF00873 AcrB/AcrD/AcrF family ISX50_19085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISX50_19095 PF06826 Predicted Permease Membrane Region ISX50_19095 PF02080 TrkA-C domain ISX50_19100 PF00155 Aminotransferase class I and II ISX50_19115 PF00378 Enoyl-CoA hydratase/isomerase ISX50_19120 PF01032 FecCD transport family ISX50_19130 PF00593 TonB dependent receptor ISX50_19130 PF07715 TonB-dependent Receptor Plug Domain ISX50_19135 PF12833 Helix-turn-helix domain ISX50_19145 PF00005 ABC transporter ISX50_19150 PF07690 Major Facilitator Superfamily ISX50_19155 PF07995 Glucose / Sorbosone dehydrogenase ISX50_19160 PF00313 'Cold-shock' DNA-binding domain ISX50_19165 PF07152 YaeQ protein ISX50_19175 PF01227 GTP cyclohydrolase I ISX50_19180 PF00994 Probable molybdopterin binding domain ISX50_19180 PF03454 MoeA C-terminal region (domain IV) ISX50_19180 PF03453 MoeA N-terminal region (domain I and II) ISX50_19185 PF00899 ThiF family ISX50_19205 PF00581 Rhodanese-like domain ISX50_19210 PF01590 GAF domain ISX50_19210 PF00360 Phytochrome region ISX50_19210 PF00990 Diguanylate cyclase, GGDEF domain ISX50_19210 PF00563 EAL domain ISX50_19225 PF13533 Biotin-lipoyl like ISX50_19230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_19230 PF03466 LysR substrate binding domain ISX50_19240 PF00923 Transaldolase/Fructose-6-phosphate aldolase ISX50_19245 PF00456 Transketolase, thiamine diphosphate binding domain ISX50_19245 PF02780 Transketolase, C-terminal domain ISX50_19245 PF02779 Transketolase, pyrimidine binding domain ISX50_19255 PF01609 Transposase DDE domain ISX50_19255 PF13006 Insertion element 4 transposase N-terminal ISX50_19260 PF08447 PAS fold ISX50_19260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_19265 PF01037 Lrp/AsnC ligand binding domain ISX50_19280 PF05547 Immune inhibitor A peptidase M6 ISX50_19280 PF00801 PKD domain ISX50_19285 PF07690 Major Facilitator Superfamily ISX50_19290 PF03466 LysR substrate binding domain ISX50_19290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_19295 PF00512 His Kinase A (phospho-acceptor) domain ISX50_19295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_19295 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISX50_19295 PF00072 Response regulator receiver domain ISX50_19295 PF01627 Hpt domain ISX50_19300 PF00072 Response regulator receiver domain ISX50_19305 PF00005 ABC transporter ISX50_19310 PF01032 FecCD transport family ISX50_19315 PF01032 FecCD transport family ISX50_19320 PF01497 Periplasmic binding protein ISX50_19345 PF01594 AI-2E family transporter ISX50_19355 PF00529 HlyD membrane-fusion protein of T1SS ISX50_19355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISX50_19365 PF00990 Diguanylate cyclase, GGDEF domain ISX50_19365 PF07694 5TMR of 5TMR-LYT ISX50_19390 PF01979 Amidohydrolase family ISX50_19395 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ISX50_19395 PF12833 Helix-turn-helix domain ISX50_19405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_19405 PF03466 LysR substrate binding domain ISX50_19415 PF02581 Thiamine monophosphate synthase ISX50_19420 PF00672 HAMP domain ISX50_19420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_19420 PF02743 Cache domain ISX50_19425 PF02110 Hydroxyethylthiazole kinase family ISX50_19430 PF03070 TENA/THI-4/PQQC family ISX50_19435 PF09084 NMT1/THI5 like ISX50_19440 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_19445 PF00005 ABC transporter ISX50_19450 PF08543 Phosphomethylpyrimidine kinase ISX50_19455 PF00892 EamA-like transporter family ISX50_19480 PF13417 Glutathione S-transferase, N-terminal domain ISX50_19480 PF00043 Glutathione S-transferase, C-terminal domain ISX50_19500 PF00512 His Kinase A (phospho-acceptor) domain ISX50_19500 PF00672 HAMP domain ISX50_19500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_19505 PF00486 Transcriptional regulatory protein, C terminal ISX50_19505 PF00072 Response regulator receiver domain ISX50_19510 PF00873 AcrB/AcrD/AcrF family ISX50_19520 PF02321 Outer membrane efflux protein ISX50_19525 PF01594 AI-2E family transporter ISX50_19550 PF00245 Alkaline phosphatase ISX50_19560 PF00478 IMP dehydrogenase / GMP reductase domain ISX50_19585 PF01554 MatE ISX50_19590 PF03466 LysR substrate binding domain ISX50_19590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_19595 PF00128 Alpha amylase, catalytic domain ISX50_19600 PF00892 EamA-like transporter family ISX50_19610 PF00892 EamA-like transporter family ISX50_19630 PF00107 Zinc-binding dehydrogenase ISX50_19630 PF08240 Alcohol dehydrogenase GroES-like domain ISX50_19670 PF07969 Amidohydrolase family ISX50_19675 PF00871 Acetokinase family ISX50_19680 PF00270 DEAD/DEAH box helicase ISX50_19680 PF03880 DbpA RNA binding domain ISX50_19680 PF00271 Helicase conserved C-terminal domain ISX50_19685 PF00773 RNB domain ISX50_19685 PF00575 S1 RNA binding domain ISX50_19685 PF17876 Cold shock domain ISX50_19685 PF08206 Ribonuclease B OB domain ISX50_19690 PF12833 Helix-turn-helix domain ISX50_19700 PF12849 PBP superfamily domain ISX50_19705 PF01575 MaoC like domain ISX50_19710 PF00873 AcrB/AcrD/AcrF family ISX50_19715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISX50_19720 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ISX50_19735 PF07687 Peptidase dimerisation domain ISX50_19735 PF01546 Peptidase family M20/M25/M40 ISX50_19745 PF00248 Aldo/keto reductase family ISX50_19750 PF08032 RNA 2'-O ribose methyltransferase substrate binding ISX50_19750 PF00588 SpoU rRNA Methylase family ISX50_19755 PF11953 Domain of unknown function (DUF3470) ISX50_19755 PF00037 4Fe-4S binding domain ISX50_19765 PF00271 Helicase conserved C-terminal domain ISX50_19765 PF00270 DEAD/DEAH box helicase ISX50_19775 PF14579 Helix-hairpin-helix motif ISX50_19775 PF02811 PHP domain ISX50_19775 PF11490 DNA polymerase III polC-type N-terminus II ISX50_19775 PF07733 Bacterial DNA polymerase III alpha NTPase domain ISX50_19775 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ISX50_19775 PF00929 Exonuclease ISX50_19790 PF00271 Helicase conserved C-terminal domain ISX50_19790 PF00270 DEAD/DEAH box helicase ISX50_19790 PF03880 DbpA RNA binding domain ISX50_19795 PF00248 Aldo/keto reductase family ISX50_19815 PF02321 Outer membrane efflux protein ISX50_19825 PF00005 ABC transporter ISX50_19825 PF00664 ABC transporter transmembrane region ISX50_19825 PF03412 Peptidase C39 family ISX50_19860 PF02631 RecX family ISX50_19865 PF05552 Conserved TM helix ISX50_19865 PF00924 Mechanosensitive ion channel ISX50_19875 PF02683 Cytochrome C biogenesis protein transmembrane region ISX50_19875 PF11412 Disulphide bond corrector protein DsbC ISX50_19880 PF00085 Thioredoxin ISX50_19895 PF13609 Gram-negative porin ISX50_19900 PF00892 EamA-like transporter family ISX50_19905 PF00462 Glutaredoxin ISX50_19915 PF07690 Major Facilitator Superfamily ISX50_19920 PF03466 LysR substrate binding domain ISX50_19920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_19925 PF00563 EAL domain ISX50_19925 PF08448 PAS fold ISX50_19925 PF00990 Diguanylate cyclase, GGDEF domain ISX50_19925 PF08447 PAS fold ISX50_19930 PF08525 Opacity-associated protein A N-terminal motif ISX50_19930 PF01551 Peptidase family M23 ISX50_19930 PF01476 LysM domain ISX50_19955 PF07670 Nucleoside recognition ISX50_19960 PF02743 Cache domain ISX50_19960 PF00672 HAMP domain ISX50_19960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_19965 PF00128 Alpha amylase, catalytic domain ISX50_19975 PF00072 Response regulator receiver domain ISX50_19975 PF01584 CheW-like domain ISX50_19980 PF01923 Cobalamin adenosyltransferase ISX50_19985 PF01243 Pyridoxamine 5'-phosphate oxidase ISX50_19990 PF06228 Haem utilisation ChuX/HutX ISX50_19995 PF04055 Radical SAM superfamily ISX50_20000 PF03544 Gram-negative bacterial TonB protein C-terminal ISX50_20005 PF01618 MotA/TolQ/ExbB proton channel family ISX50_20010 PF02472 Biopolymer transport protein ExbD/TolR ISX50_20020 PF01032 FecCD transport family ISX50_20025 PF00005 ABC transporter ISX50_20065 PF01467 Cytidylyltransferase-like ISX50_20070 PF02540 NAD synthase ISX50_20075 PF03473 MOSC domain ISX50_20075 PF03476 MOSC N-terminal beta barrel domain ISX50_20075 PF00111 2Fe-2S iron-sulfur cluster binding domain ISX50_20085 PF01979 Amidohydrolase family ISX50_20090 PF05661 Protein of unknown function (DUF808) ISX50_20100 PF02028 BCCT, betaine/carnitine/choline family transporter ISX50_20115 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ISX50_20115 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ISX50_20120 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ISX50_20125 PF03480 Bacterial extracellular solute-binding protein, family 7 ISX50_20130 PF01266 FAD dependent oxidoreductase ISX50_20145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISX50_20145 PF00205 Thiamine pyrophosphate enzyme, central domain ISX50_20145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISX50_20150 PF07728 AAA domain (dynein-related subfamily) ISX50_20150 PF08406 CbbQ/NirQ/NorQ C-terminal ISX50_20150 PF12556 Cobaltochelatase CobS subunit N terminal ISX50_20155 PF11775 Cobalamin biosynthesis protein CobT VWA domain ISX50_20155 PF06213 Cobalamin biosynthesis protein CobT ISX50_20160 PF01925 Sulfite exporter TauE/SafE ISX50_20165 PF01515 Phosphate acetyl/butaryl transferase ISX50_20170 PF09339 IclR helix-turn-helix domain ISX50_20170 PF01614 Bacterial transcriptional regulator ISX50_20175 PF00171 Aldehyde dehydrogenase family ISX50_20180 PF01274 Malate synthase ISX50_20185 PF03466 LysR substrate binding domain ISX50_20185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_20190 PF00463 Isocitrate lyase family ISX50_20205 PF17327 Acyl homoserine lactone synthase ISX50_20210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_20210 PF00072 Response regulator receiver domain ISX50_20220 PF03466 LysR substrate binding domain ISX50_20220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_20225 PF03466 LysR substrate binding domain ISX50_20225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_20260 PF07694 5TMR of 5TMR-LYT ISX50_20260 PF00990 Diguanylate cyclase, GGDEF domain ISX50_20280 PF03466 LysR substrate binding domain ISX50_20280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_20300 PF00005 ABC transporter ISX50_20305 PF02687 FtsX-like permease family ISX50_20305 PF12704 MacB-like periplasmic core domain ISX50_20325 PF00884 Sulfatase ISX50_20330 PF03466 LysR substrate binding domain ISX50_20330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_20335 PF04055 Radical SAM superfamily ISX50_20335 PF13186 Iron-sulfur cluster-binding domain ISX50_20345 PF03466 LysR substrate binding domain ISX50_20345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_20355 PF01699 Sodium/calcium exchanger protein ISX50_20365 PF01769 Divalent cation transporter ISX50_20365 PF00571 CBS domain ISX50_20365 PF03448 MgtE intracellular N domain ISX50_20370 PF01914 MarC family integral membrane protein ISX50_20375 PF00873 AcrB/AcrD/AcrF family ISX50_20385 PF00924 Mechanosensitive ion channel ISX50_20395 PF07549 SecD/SecF GG Motif ISX50_20395 PF02355 Protein export membrane protein ISX50_20400 PF13721 SecD export protein N-terminal TM region ISX50_20400 PF02355 Protein export membrane protein ISX50_20400 PF07549 SecD/SecF GG Motif ISX50_20425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISX50_20440 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_20445 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_20445 PF14785 Maltose transport system permease protein MalF P2 domain ISX50_20450 PF01547 Bacterial extracellular solute-binding protein ISX50_20455 PF00005 ABC transporter ISX50_20455 PF08402 TOBE domain ISX50_20465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_20465 PF02743 Cache domain ISX50_20465 PF00672 HAMP domain ISX50_20470 PF17863 AAA lid domain ISX50_20470 PF07726 ATPase family associated with various cellular activities (AAA) ISX50_20475 PF01882 Protein of unknown function DUF58 ISX50_20485 PF00092 von Willebrand factor type A domain ISX50_20485 PF07584 Aerotolerance regulator N-terminal ISX50_20490 PF07584 Aerotolerance regulator N-terminal ISX50_20490 PF13519 von Willebrand factor type A domain ISX50_20500 PF17151 Periplasmic sensor domain ISX50_20500 PF00990 Diguanylate cyclase, GGDEF domain ISX50_20505 PF00005 ABC transporter ISX50_20510 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_20515 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_20520 PF12849 PBP superfamily domain ISX50_20525 PF16591 Helical bimodular sensor domain ISX50_20525 PF00672 HAMP domain ISX50_20525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_20530 PF03280 Proteobacterial lipase chaperone protein ISX50_20535 PF00561 alpha/beta hydrolase fold ISX50_20540 PF00657 GDSL-like Lipase/Acylhydrolase ISX50_20545 PF00271 Helicase conserved C-terminal domain ISX50_20545 PF00270 DEAD/DEAH box helicase ISX50_20555 PF03734 L,D-transpeptidase catalytic domain ISX50_20555 PF17969 L,D-transpeptidase C-terminal domain ISX50_20555 PF01476 LysM domain ISX50_20560 PF01048 Phosphorylase superfamily ISX50_20575 PF00990 Diguanylate cyclase, GGDEF domain ISX50_20585 PF11742 Protein of unknown function (DUF3302) ISX50_20590 PF00529 HlyD membrane-fusion protein of T1SS ISX50_20590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISX50_20595 PF07155 ECF-type riboflavin transporter, S component ISX50_20600 PF00005 ABC transporter ISX50_20600 PF12558 ATP-binding cassette cobalt transporter ISX50_20615 PF00128 Alpha amylase, catalytic domain ISX50_20615 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ISX50_20615 PF02806 Alpha amylase, C-terminal all-beta domain ISX50_20620 PF02446 4-alpha-glucanotransferase ISX50_20625 PF00343 Carbohydrate phosphorylase ISX50_20630 PF00196 Bacterial regulatory proteins, luxR family ISX50_20630 PF17874 MalT-like TPR region ISX50_20645 PF02630 SCO1/SenC ISX50_20655 PF03193 RsgA GTPase ISX50_20660 PF00375 Sodium:dicarboxylate symporter family ISX50_20670 PF00196 Bacterial regulatory proteins, luxR family ISX50_20670 PF00072 Response regulator receiver domain ISX50_20675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_20675 PF00512 His Kinase A (phospho-acceptor) domain ISX50_20680 PF13247 4Fe-4S dicluster domain ISX50_20685 PF03916 Polysulphide reductase, NrfD ISX50_20690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISX50_20690 PF00384 Molybdopterin oxidoreductase ISX50_20690 PF01568 Molydopterin dinucleotide binding domain ISX50_20700 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ISX50_20705 PF03466 LysR substrate binding domain ISX50_20705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_20710 PF01037 Lrp/AsnC ligand binding domain ISX50_20715 PF01810 LysE type translocator ISX50_20725 PF00128 Alpha amylase, catalytic domain ISX50_20725 PF02903 Alpha amylase, N-terminal ig-like domain ISX50_20725 PF16657 Maltogenic Amylase, C-terminal domain ISX50_20730 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ISX50_20730 PF11852 Domain of unknown function (DUF3372) ISX50_20730 PF03714 Bacterial pullanase-associated domain ISX50_20730 PF18494 Pullulanase Ins domain ISX50_20730 PF17967 Pullulanase N2 domain ISX50_20740 PF02264 LamB porin ISX50_20745 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ISX50_20745 PF00128 Alpha amylase, catalytic domain ISX50_20755 PF04816 tRNA (adenine(22)-N(1))-methyltransferase ISX50_20760 PF01553 Acyltransferase ISX50_20765 PF00175 Oxidoreductase NAD-binding domain ISX50_20765 PF00970 Oxidoreductase FAD-binding domain ISX50_20770 PF09313 Domain of unknown function (DUF1971) ISX50_20775 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISX50_20775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISX50_20780 PF01734 Patatin-like phospholipase ISX50_20785 PF00199 Catalase ISX50_20785 PF06628 Catalase-related immune-responsive ISX50_20790 PF02595 Glycerate kinase family ISX50_20800 PF01261 Xylose isomerase-like TIM barrel ISX50_20805 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ISX50_20815 PF00596 Class II Aldolase and Adducin N-terminal domain ISX50_20820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISX50_20825 PF03611 PTS system sugar-specific permease component ISX50_20830 PF08220 DeoR-like helix-turn-helix domain ISX50_20830 PF00455 DeoR C terminal sensor domain ISX50_20865 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ISX50_20865 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ISX50_20875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_20875 PF03466 LysR substrate binding domain ISX50_20880 PF06224 Winged helix DNA-binding domain ISX50_20895 PF00535 Glycosyl transferase family 2 ISX50_20895 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 ISX50_20900 PF01852 START domain ISX50_20915 PF01758 Sodium Bile acid symporter family ISX50_20920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_20920 PF03466 LysR substrate binding domain ISX50_20930 PF00230 Major intrinsic protein ISX50_20935 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISX50_20935 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISX50_20940 PF08220 DeoR-like helix-turn-helix domain ISX50_20940 PF00455 DeoR C terminal sensor domain ISX50_20945 PF01266 FAD dependent oxidoreductase ISX50_20945 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ISX50_20950 PF00106 short chain dehydrogenase ISX50_20955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_20955 PF03466 LysR substrate binding domain ISX50_20965 PF01177 Asp/Glu/Hydantoin racemase ISX50_20975 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ISX50_20975 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_20980 PF00881 Nitroreductase family ISX50_20985 PF13091 PLD-like domain ISX50_20995 PF01872 RibD C-terminal domain ISX50_21015 PF00884 Sulfatase ISX50_21015 PF12411 Choline sulfatase enzyme C terminal ISX50_21020 PF13186 Iron-sulfur cluster-binding domain ISX50_21020 PF04055 Radical SAM superfamily ISX50_21025 PF03466 LysR substrate binding domain ISX50_21025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_21030 PF07690 Major Facilitator Superfamily ISX50_21065 PF00563 EAL domain ISX50_21065 PF00990 Diguanylate cyclase, GGDEF domain ISX50_21065 PF03707 Bacterial signalling protein N terminal repeat ISX50_21070 PF14602 Hexapeptide repeat of succinyl-transferase ISX50_21070 PF12464 Maltose acetyltransferase ISX50_21075 PF00356 Bacterial regulatory proteins, lacI family ISX50_21080 PF00232 Glycosyl hydrolase family 1 ISX50_21095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ISX50_21105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_21105 PF03466 LysR substrate binding domain ISX50_21110 PF14863 Alkyl sulfatase dimerisation ISX50_21110 PF14864 Alkyl sulfatase C-terminal ISX50_21110 PF00753 Metallo-beta-lactamase superfamily ISX50_21115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_21115 PF03466 LysR substrate binding domain ISX50_21120 PF01554 MatE ISX50_21125 PF00378 Enoyl-CoA hydratase/isomerase ISX50_21130 PF00106 short chain dehydrogenase ISX50_21140 PF00232 Glycosyl hydrolase family 1 ISX50_21145 PF00367 phosphotransferase system, EIIB ISX50_21145 PF02378 Phosphotransferase system, EIIC ISX50_21150 PF01202 Shikimate kinase ISX50_21155 PF00920 Dehydratase family ISX50_21160 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISX50_21160 PF00356 Bacterial regulatory proteins, lacI family ISX50_21210 PF00589 Phage integrase family ISX50_21210 PF13495 Phage integrase, N-terminal SAM-like domain ISX50_21215 PF02219 Methylenetetrahydrofolate reductase ISX50_21215 PF02574 Homocysteine S-methyltransferase ISX50_21240 PF14765 Polyketide synthase dehydratase ISX50_21240 PF00698 Acyl transferase domain ISX50_21240 PF08240 Alcohol dehydrogenase GroES-like domain ISX50_21240 PF16197 Ketoacyl-synthetase C-terminal extension ISX50_21240 PF00109 Beta-ketoacyl synthase, N-terminal domain ISX50_21240 PF02801 Beta-ketoacyl synthase, C-terminal domain ISX50_21240 PF08659 KR domain ISX50_21240 PF00550 Phosphopantetheine attachment site ISX50_21250 PF07690 Major Facilitator Superfamily ISX50_21255 PF02311 AraC-like ligand binding domain ISX50_21255 PF12833 Helix-turn-helix domain ISX50_21265 PF03466 LysR substrate binding domain ISX50_21265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_21270 PF00962 Adenosine/AMP deaminase ISX50_21290 PF12833 Helix-turn-helix domain ISX50_21290 PF17853 GGDEF-like domain ISX50_21305 PF01204 Trehalase ISX50_21310 PF12833 Helix-turn-helix domain ISX50_21315 PF02056 Family 4 glycosyl hydrolase ISX50_21315 PF11975 Family 4 glycosyl hydrolase C-terminal domain ISX50_21320 PF02600 Disulfide bond formation protein DsbB ISX50_21350 PF01047 MarR family ISX50_21355 PF00005 ABC transporter ISX50_21355 PF00571 CBS domain ISX50_21360 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_21365 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ISX50_21370 PF00732 GMC oxidoreductase ISX50_21370 PF05199 GMC oxidoreductase ISX50_21375 PF00171 Aldehyde dehydrogenase family ISX50_21380 PF13977 BetI-type transcriptional repressor, C-terminal ISX50_21380 PF00440 Bacterial regulatory proteins, tetR family ISX50_21390 PF00072 Response regulator receiver domain ISX50_21390 PF00486 Transcriptional regulatory protein, C terminal ISX50_21395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_21395 PF00512 His Kinase A (phospho-acceptor) domain ISX50_21395 PF00672 HAMP domain ISX50_21405 PF01447 Thermolysin metallopeptidase, catalytic domain ISX50_21405 PF02868 Thermolysin metallopeptidase, alpha-helical domain ISX50_21405 PF04151 Bacterial pre-peptidase C-terminal domain ISX50_21405 PF07504 Fungalysin/Thermolysin Propeptide Motif ISX50_21405 PF03413 Peptidase propeptide and YPEB domain ISX50_21410 PF04389 Peptidase family M28 ISX50_21410 PF04151 Bacterial pre-peptidase C-terminal domain ISX50_21415 PF01266 FAD dependent oxidoreductase ISX50_21430 PF00158 Sigma-54 interaction domain ISX50_21430 PF00072 Response regulator receiver domain ISX50_21430 PF02954 Bacterial regulatory protein, Fis family ISX50_21435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_21435 PF02743 Cache domain ISX50_21435 PF00512 His Kinase A (phospho-acceptor) domain ISX50_21440 PF02838 Glycosyl hydrolase family 20, domain 2 ISX50_21440 PF00728 Glycosyl hydrolase family 20, catalytic domain ISX50_21445 PF01081 KDPG and KHG aldolase ISX50_21450 PF00294 pfkB family carbohydrate kinase ISX50_21455 PF00474 Sodium:solute symporter family ISX50_21465 PF07969 Amidohydrolase family ISX50_21475 PF02685 Glucokinase ISX50_21475 PF01380 SIS domain ISX50_21475 PF01418 Helix-turn-helix domain, rpiR family ISX50_21490 PF00884 Sulfatase ISX50_21490 PF08019 Phosphoethanolamine transferase EptA/EptB ISX50_21515 PF00005 ABC transporter ISX50_21515 PF00664 ABC transporter transmembrane region ISX50_21520 PF04286 Protein of unknown function (DUF445) ISX50_21525 PF01037 Lrp/AsnC ligand binding domain ISX50_21545 PF13411 MerR HTH family regulatory protein ISX50_21550 PF00474 Sodium:solute symporter family ISX50_21560 PF00171 Aldehyde dehydrogenase family ISX50_21560 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ISX50_21560 PF14850 DNA-binding domain of Proline dehydrogenase ISX50_21560 PF01619 Proline dehydrogenase ISX50_21565 PF12833 Helix-turn-helix domain ISX50_21570 PF00196 Bacterial regulatory proteins, luxR family ISX50_21570 PF00072 Response regulator receiver domain ISX50_21575 PF01243 Pyridoxamine 5'-phosphate oxidase ISX50_21575 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ISX50_21580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_21580 PF00512 His Kinase A (phospho-acceptor) domain ISX50_21580 PF02743 Cache domain ISX50_21585 PF02954 Bacterial regulatory protein, Fis family ISX50_21585 PF00072 Response regulator receiver domain ISX50_21585 PF00158 Sigma-54 interaction domain ISX50_21590 PF00529 HlyD membrane-fusion protein of T1SS ISX50_21605 PF03412 Peptidase C39 family ISX50_21605 PF00664 ABC transporter transmembrane region ISX50_21605 PF00005 ABC transporter ISX50_21615 PF13718 GNAT acetyltransferase 2 ISX50_21615 PF05127 Helicase ISX50_21620 PF08775 ParB family ISX50_21620 PF02195 ParB-like nuclease domain ISX50_21625 PF13614 AAA domain ISX50_21625 PF18607 ParA helix turn helix domain ISX50_21640 PF00005 ABC transporter ISX50_21640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISX50_21645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISX50_21645 PF00005 ABC transporter ISX50_21655 PF08719 Domain of unknown function (DUF1768) ISX50_21655 PF00925 GTP cyclohydrolase II ISX50_21665 PF00072 Response regulator receiver domain ISX50_21665 PF01627 Hpt domain ISX50_21665 PF00512 His Kinase A (phospho-acceptor) domain ISX50_21665 PF00672 HAMP domain ISX50_21665 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ISX50_21665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_21670 PF00106 short chain dehydrogenase ISX50_21680 PF00202 Aminotransferase class-III ISX50_21685 PF00392 Bacterial regulatory proteins, gntR family ISX50_21695 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_21700 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_21705 PF00005 ABC transporter ISX50_21710 PF01609 Transposase DDE domain ISX50_21710 PF13006 Insertion element 4 transposase N-terminal ISX50_21715 PF07702 UTRA domain ISX50_21715 PF00392 Bacterial regulatory proteins, gntR family ISX50_21740 PF08402 TOBE domain ISX50_21740 PF00005 ABC transporter ISX50_21750 PF00486 Transcriptional regulatory protein, C terminal ISX50_21750 PF00072 Response regulator receiver domain ISX50_21755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_21755 PF00512 His Kinase A (phospho-acceptor) domain ISX50_21755 PF00672 HAMP domain ISX50_21770 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ISX50_21775 PF04209 homogentisate 1,2-dioxygenase ISX50_21785 PF14497 Glutathione S-transferase, C-terminal domain ISX50_21785 PF02798 Glutathione S-transferase, N-terminal domain ISX50_21790 PF00356 Bacterial regulatory proteins, lacI family ISX50_21795 PF00459 Inositol monophosphatase family ISX50_21800 PF12706 Beta-lactamase superfamily domain ISX50_21800 PF00753 Metallo-beta-lactamase superfamily ISX50_21805 PF00005 ABC transporter ISX50_21805 PF17912 MalK OB fold domain ISX50_21810 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_21815 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_21835 PF02798 Glutathione S-transferase, N-terminal domain ISX50_21835 PF14497 Glutathione S-transferase, C-terminal domain ISX50_21855 PF00698 Acyl transferase domain ISX50_21855 PF08240 Alcohol dehydrogenase GroES-like domain ISX50_21855 PF08659 KR domain ISX50_21855 PF00550 Phosphopantetheine attachment site ISX50_21855 PF14765 Polyketide synthase dehydratase ISX50_21860 PF03466 LysR substrate binding domain ISX50_21860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_21865 PF13193 AMP-binding enzyme C-terminal domain ISX50_21865 PF00501 AMP-binding enzyme ISX50_21870 PF00351 Biopterin-dependent aromatic amino acid hydroxylase ISX50_21875 PF01329 Pterin 4 alpha carbinolamine dehydratase ISX50_21885 PF01709 Transcriptional regulator ISX50_21900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ISX50_21900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ISX50_21915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_21915 PF03466 LysR substrate binding domain ISX50_21930 PF00005 ABC transporter ISX50_21935 PF02687 FtsX-like permease family ISX50_21935 PF12704 MacB-like periplasmic core domain ISX50_21950 PF06580 Histidine kinase ISX50_21950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_21950 PF07694 5TMR of 5TMR-LYT ISX50_21955 PF00072 Response regulator receiver domain ISX50_21955 PF04397 LytTr DNA-binding domain ISX50_21960 PF05193 Peptidase M16 inactive domain ISX50_21960 PF00675 Insulinase (Peptidase family M16) ISX50_21970 PF07549 SecD/SecF GG Motif ISX50_21970 PF02355 Protein export membrane protein ISX50_21970 PF13721 SecD export protein N-terminal TM region ISX50_21975 PF07549 SecD/SecF GG Motif ISX50_21975 PF02355 Protein export membrane protein ISX50_21990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ISX50_21995 PF07690 Major Facilitator Superfamily ISX50_22005 PF03466 LysR substrate binding domain ISX50_22005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_22020 PF00155 Aminotransferase class I and II ISX50_22030 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ISX50_22065 PF01593 Flavin containing amine oxidoreductase ISX50_22070 PF00106 short chain dehydrogenase ISX50_22080 PF00875 DNA photolyase ISX50_22080 PF03441 FAD binding domain of DNA photolyase ISX50_22090 PF12973 ChrR Cupin-like domain ISX50_22095 PF04542 Sigma-70 region 2 ISX50_22095 PF04545 Sigma-70, region 4 ISX50_22105 PF14552 Tautomerase enzyme ISX50_22115 PF10928 Protein of unknown function (DUF2810) ISX50_22120 PF03616 Sodium/glutamate symporter ISX50_22125 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISX50_22125 PF18113 Rubredoxin binding C-terminal domain ISX50_22130 PF00301 Rubredoxin ISX50_22130 PF00258 Flavodoxin ISX50_22130 PF00753 Metallo-beta-lactamase superfamily ISX50_22140 PF00881 Nitroreductase family ISX50_22150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISX50_22150 PF02378 Phosphotransferase system, EIIC ISX50_22150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISX50_22155 PF01232 Mannitol dehydrogenase Rossmann domain ISX50_22155 PF08125 Mannitol dehydrogenase C-terminal domain ISX50_22160 PF05068 Mannitol repressor ISX50_22165 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ISX50_22175 PF03466 LysR substrate binding domain ISX50_22175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_22185 PF06029 AlkA N-terminal domain ISX50_22185 PF00730 HhH-GPD superfamily base excision DNA repair protein ISX50_22190 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ISX50_22190 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ISX50_22200 PF03600 Citrate transporter ISX50_22210 PF07670 Nucleoside recognition ISX50_22215 PF07670 Nucleoside recognition ISX50_22220 PF01124 MAPEG family ISX50_22240 PF12852 Cupin ISX50_22240 PF12833 Helix-turn-helix domain ISX50_22265 PF12697 Alpha/beta hydrolase family ISX50_22270 PF08329 Chitinase A, N-terminal domain ISX50_22270 PF00704 Glycosyl hydrolases family 18 ISX50_22280 PF06865 Pyrimidine/purine nucleoside phosphorylase ISX50_22285 PF02678 Pirin ISX50_22285 PF05726 Pirin C-terminal cupin domain ISX50_22295 PF03707 Bacterial signalling protein N terminal repeat ISX50_22295 PF00990 Diguanylate cyclase, GGDEF domain ISX50_22295 PF00563 EAL domain ISX50_22320 PF00486 Transcriptional regulatory protein, C terminal ISX50_22320 PF00072 Response regulator receiver domain ISX50_22335 PF00581 Rhodanese-like domain ISX50_22335 PF17773 UPF0176 acylphosphatase like domain ISX50_22350 PF00155 Aminotransferase class I and II ISX50_22355 PF01497 Periplasmic binding protein ISX50_22355 PF12833 Helix-turn-helix domain ISX50_22360 PF01554 MatE ISX50_22365 PF00005 ABC transporter ISX50_22365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISX50_22370 PF00005 ABC transporter ISX50_22375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISX50_22380 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_22395 PF01070 FMN-dependent dehydrogenase ISX50_22400 PF02652 L-lactate permease ISX50_22405 PF03466 LysR substrate binding domain ISX50_22405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_22410 PF00326 Prolyl oligopeptidase family ISX50_22410 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ISX50_22420 PF02743 Cache domain ISX50_22420 PF00672 HAMP domain ISX50_22420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_22425 PF00356 Bacterial regulatory proteins, lacI family ISX50_22435 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_22440 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_22445 PF00232 Glycosyl hydrolase family 1 ISX50_22450 PF00005 ABC transporter ISX50_22450 PF17912 MalK OB fold domain ISX50_22450 PF03459 TOBE domain ISX50_22455 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain ISX50_22455 PF06165 Glycosyltransferase family 36 ISX50_22460 PF01263 Aldose 1-epimerase ISX50_22470 PF00356 Bacterial regulatory proteins, lacI family ISX50_22475 PF13419 Haloacid dehalogenase-like hydrolase ISX50_22480 PF01238 Phosphomannose isomerase type I ISX50_22485 PF01232 Mannitol dehydrogenase Rossmann domain ISX50_22485 PF08125 Mannitol dehydrogenase C-terminal domain ISX50_22490 PF00474 Sodium:solute symporter family ISX50_22495 PF03786 D-mannonate dehydratase (UxuA) ISX50_22500 PF12464 Maltose acetyltransferase ISX50_22500 PF00132 Bacterial transferase hexapeptide (six repeats) ISX50_22510 PF00392 Bacterial regulatory proteins, gntR family ISX50_22510 PF07729 FCD domain ISX50_22515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISX50_22515 PF00005 ABC transporter ISX50_22525 PF13654 AAA domain ISX50_22525 PF05362 Lon protease (S16) C-terminal proteolytic domain ISX50_22530 PF07238 PilZ domain ISX50_22530 PF12945 Flagellar protein YcgR ISX50_22560 PF00892 EamA-like transporter family ISX50_22575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_22575 PF03466 LysR substrate binding domain ISX50_22585 PF01047 MarR family ISX50_22595 PF01274 Malate synthase ISX50_22600 PF00205 Thiamine pyrophosphate enzyme, central domain ISX50_22600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISX50_22600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISX50_22605 PF01261 Xylose isomerase-like TIM barrel ISX50_22610 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ISX50_22610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ISX50_22615 PF13660 Domain of unknown function (DUF4147) ISX50_22615 PF05161 MOFRL family ISX50_22625 PF01979 Amidohydrolase family ISX50_22640 PF01979 Amidohydrolase family ISX50_22645 PF00860 Permease family ISX50_22650 PF00860 Permease family ISX50_22655 PF00576 HIUase/Transthyretin family ISX50_22665 PF09349 OHCU decarboxylase ISX50_22665 PF01014 Uricase ISX50_22670 PF03561 Allantoicase repeat ISX50_22675 PF04115 Ureidoglycolate lyase ISX50_22705 PF04229 GrpB protein ISX50_22710 PF11008 Protein of unknown function (DUF2846) ISX50_22725 PF13411 MerR HTH family regulatory protein ISX50_22730 PF02627 Carboxymuconolactone decarboxylase family ISX50_22740 PF01979 Amidohydrolase family ISX50_22750 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ISX50_22750 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ISX50_22755 PF00941 FAD binding domain in molybdopterin dehydrogenase ISX50_22755 PF03450 CO dehydrogenase flavoprotein C-terminal domain ISX50_22775 PF01966 HD domain ISX50_22780 PF13419 Haloacid dehalogenase-like hydrolase ISX50_22785 PF03605 Anaerobic c4-dicarboxylate membrane transporter ISX50_22805 PF00970 Oxidoreductase FAD-binding domain ISX50_22805 PF00175 Oxidoreductase NAD-binding domain ISX50_22830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_22830 PF03466 LysR substrate binding domain ISX50_22840 PF13443 Cro/C1-type HTH DNA-binding domain ISX50_22845 PF14497 Glutathione S-transferase, C-terminal domain ISX50_22845 PF02798 Glutathione S-transferase, N-terminal domain ISX50_22850 PF03466 LysR substrate binding domain ISX50_22850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_22855 PF00293 NUDIX domain ISX50_22855 PF13344 Haloacid dehalogenase-like hydrolase ISX50_22865 PF00155 Aminotransferase class I and II ISX50_22870 PF00756 Putative esterase ISX50_22875 PF08240 Alcohol dehydrogenase GroES-like domain ISX50_22875 PF00107 Zinc-binding dehydrogenase ISX50_22885 PF00893 Small Multidrug Resistance protein ISX50_22900 PF00873 AcrB/AcrD/AcrF family ISX50_22905 PF00529 HlyD membrane-fusion protein of T1SS ISX50_22905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISX50_22910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISX50_22915 PF12704 MacB-like periplasmic core domain ISX50_22915 PF02687 FtsX-like permease family ISX50_22915 PF00005 ABC transporter ISX50_22920 PF00672 HAMP domain ISX50_22920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_22920 PF00512 His Kinase A (phospho-acceptor) domain ISX50_22925 PF00486 Transcriptional regulatory protein, C terminal ISX50_22925 PF00072 Response regulator receiver domain ISX50_22935 PF01228 Glycine radical ISX50_22935 PF02901 Pyruvate formate lyase-like ISX50_22940 PF00459 Inositol monophosphatase family ISX50_22945 PF00356 Bacterial regulatory proteins, lacI family ISX50_22950 PF03009 Glycerophosphoryl diester phosphodiesterase family ISX50_22955 PF08402 TOBE domain ISX50_22955 PF00005 ABC transporter ISX50_22960 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_22980 PF12833 Helix-turn-helix domain ISX50_22985 PF06751 Ethanolamine ammonia lyase large subunit (EutB) ISX50_22990 PF05985 Ethanolamine ammonia-lyase light chain (EutC) ISX50_22995 PF13520 Amino acid permease ISX50_23000 PF03466 LysR substrate binding domain ISX50_23000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_23010 PF00356 Bacterial regulatory proteins, lacI family ISX50_23015 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ISX50_23015 PF13378 Enolase C-terminal domain-like ISX50_23030 PF00593 TonB dependent receptor ISX50_23030 PF07715 TonB-dependent Receptor Plug Domain ISX50_23035 PF02502 Ribose/Galactose Isomerase ISX50_23040 PF00246 Zinc carboxypeptidase ISX50_23045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISX50_23050 PF03466 LysR substrate binding domain ISX50_23050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_23055 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_23060 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_23075 PF13419 Haloacid dehalogenase-like hydrolase ISX50_23080 PF00005 ABC transporter ISX50_23080 PF03459 TOBE domain ISX50_23080 PF17912 MalK OB fold domain ISX50_23085 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_23090 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISX50_23105 PF01238 Phosphomannose isomerase type I ISX50_23110 PF02378 Phosphotransferase system, EIIC ISX50_23110 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISX50_23110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISX50_23115 PF12833 Helix-turn-helix domain ISX50_23120 PF00474 Sodium:solute symporter family ISX50_23130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISX50_23150 PF00672 HAMP domain ISX50_23150 PF12729 Four helix bundle sensory module for signal transduction ISX50_23150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_23155 PF03222 Tryptophan/tyrosine permease family ISX50_23160 PF07690 Major Facilitator Superfamily ISX50_23165 PF03466 LysR substrate binding domain ISX50_23165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_23175 PF00155 Aminotransferase class I and II ISX50_23175 PF00392 Bacterial regulatory proteins, gntR family ISX50_23190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_23190 PF00672 HAMP domain ISX50_23190 PF12729 Four helix bundle sensory module for signal transduction ISX50_23200 PF03466 LysR substrate binding domain ISX50_23200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_23210 PF17200 Single Cache domain 2 ISX50_23210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISX50_23210 PF00672 HAMP domain ISX50_23225 PF03466 LysR substrate binding domain ISX50_23225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_23235 PF13378 Enolase C-terminal domain-like ISX50_23235 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ISX50_23240 PF00512 His Kinase A (phospho-acceptor) domain ISX50_23240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISX50_23240 PF02743 Cache domain ISX50_23245 PF00072 Response regulator receiver domain ISX50_23245 PF02954 Bacterial regulatory protein, Fis family ISX50_23245 PF00158 Sigma-54 interaction domain ISX50_23260 PF00005 ABC transporter ISX50_23265 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_23270 PF00528 Binding-protein-dependent transport system inner membrane component ISX50_23315 PF00483 Nucleotidyl transferase ISX50_23320 PF03922 OmpW family ISX50_23330 PF00106 short chain dehydrogenase ISX50_23335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISX50_23335 PF03466 LysR substrate binding domain ISX50_23340 PF01638 HxlR-like helix-turn-helix ISX50_23365 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ISX50_23395 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ISX50_23400 PF08281 Sigma-70, region 4 ISX50_23400 PF04542 Sigma-70 region 2 ISX50_23425 PF04013 Putative SAM-dependent RNA methyltransferase