AL537_00020	SM00382	ATPases associated with a variety of cellular activities
AL537_00020	SM00448	cheY-homologous receiver domain
AL537_00025	SM00387	Histidine kinase-like ATPases
AL537_00025	SM00388	His Kinase A (phosphoacceptor) domain
AL537_00030	SM00382	ATPases associated with a variety of cellular activities
AL537_00125	SM01130	AL537_00125
AL537_00150	SM00028	Tetratricopeptide repeats
AL537_00235	SM00479	AL537_00235
AL537_00250	SM00849	Metallo-beta-lactamase superfamily
AL537_00255	SM00257	Lysin motif
AL537_00270	SM00938	Nitrogen regulatory protein P-II
AL537_00280	SM00977	TilS substrate C-terminal domain
AL537_00290	SM00481	DNA polymerase alpha chain like domain
AL537_00320	SM00935	Outer membrane protein (OmpH-like)
AL537_00330	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL537_00375	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL537_00430	SM00849	Metallo-beta-lactamase superfamily
AL537_00495	SM00495	Chitin-binding domain type 3
AL537_00495	SM00636	AL537_00495
AL537_00510	SM00487	DEAD-like helicases superfamily
AL537_00510	SM00490	helicase superfamily c-terminal domain
AL537_00550	SM00900	AL537_00550
AL537_00610	SM00464	Found in ATP-dependent protease La (LON)
AL537_00640	SM00267	diguanylate cyclase
AL537_00655	SM00925	MltA specific insert domain
AL537_00750	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL537_00750	SM01134	AL537_00750
AL537_00780	SM00354	helix_turn _helix lactose operon repressor
AL537_00795	SM00354	helix_turn _helix lactose operon repressor
AL537_00825	SM00354	helix_turn _helix lactose operon repressor
AL537_00830	SM01038	Beta galactosidase small chain
AL537_00860	SM00028	Tetratricopeptide repeats
AL537_00910	SM00858	AL537_00910
AL537_00915	SM00382	ATPases associated with a variety of cellular activities
AL537_00930	SM00342	helix_turn_helix, arabinose operon control protein
AL537_00950	SM00838	Elongation factor G C-terminus
AL537_00950	SM00889	Elongation factor G, domain IV
AL537_00955	SM00382	ATPases associated with a variety of cellular activities
AL537_00985	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
AL537_00990	SM01133	AL537_00990
AL537_01050	SM00052	Putative diguanylate phosphodiesterase
AL537_01050	SM00091	PAS domain
AL537_01050	SM00267	diguanylate cyclase
AL537_01070	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL537_01075	SM00028	Tetratricopeptide repeats
AL537_01080	SM00316	Ribosomal protein S1-like RNA-binding domain
AL537_01080	SM00322	K homology RNA-binding domain
AL537_01085	SM01387	AL537_01085
AL537_01105	SM00316	Ribosomal protein S1-like RNA-binding domain
AL537_01145	SM00382	ATPases associated with a variety of cellular activities
AL537_01155	SM01103	AL537_01155
AL537_01180	SM00363	S4 RNA-binding domain
AL537_01220	SM00091	PAS domain
AL537_01220	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_01220	SM00387	Histidine kinase-like ATPases
AL537_01220	SM00388	His Kinase A (phosphoacceptor) domain
AL537_01220	SM00448	cheY-homologous receiver domain
AL537_01240	SM00382	ATPases associated with a variety of cellular activities
AL537_01245	SM00382	ATPases associated with a variety of cellular activities
AL537_01265	SM01068	Putative carbohydrate binding domain
AL537_01275	SM00382	ATPases associated with a variety of cellular activities
AL537_01295	SM00938	Nitrogen regulatory protein P-II
AL537_01320	SM00487	DEAD-like helicases superfamily
AL537_01320	SM00490	helicase superfamily c-terminal domain
AL537_01320	SM00847	Helicase associated domain (HA2)  Add an annotation
AL537_01375	SM00382	ATPases associated with a variety of cellular activities
AL537_01385	SM00947	Carbonic anhydrase
AL537_01415	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_01415	SM00895	AL537_01415
AL537_01420	SM00644	AL537_01420
AL537_01485	SM00382	ATPases associated with a variety of cellular activities
AL537_01485	SM00962	SRP54-type protein, GTPase domain
AL537_01485	SM00963	SRP54-type protein, helical bundle domain
AL537_01495	SM01091	Transporter associated domain
AL537_01525	SM00829	Enoylreductase
AL537_01610	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AL537_01620	SM00382	ATPases associated with a variety of cellular activities
AL537_01630	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AL537_01630	SM00534	ATPase domain of DNA mismatch repair MUTS family
AL537_01640	SM00257	Lysin motif
AL537_01675	SM01192	AL537_01675
AL537_01675	SM01193	AL537_01675
AL537_01690	SM00954	Region found in RelA / SpoT proteins
AL537_01710	SM00073	Histidine Phosphotransfer domain
AL537_01710	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_01710	SM00387	Histidine kinase-like ATPases
AL537_01710	SM00388	His Kinase A (phosphoacceptor) domain
AL537_01710	SM00448	cheY-homologous receiver domain
AL537_01735	SM00358	Double-stranded RNA binding motif
AL537_01735	SM00535	Ribonuclease III family
AL537_01745	SM00838	Elongation factor G C-terminus
AL537_01885	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL537_01900	SM00861	Transketolase, pyrimidine binding domain
AL537_01920	SM00731	SprT homologues.
AL537_01945	SM00732	Likely ribonuclease with RNase H fold.
AL537_01955	SM00382	ATPases associated with a variety of cellular activities
AL537_01975	SM01152	AL537_01975
AL537_01990	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL537_02010	SM00478	endonuclease III
AL537_02010	SM00525	AL537_02010
AL537_02060	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_02060	SM01049	AL537_02060
AL537_02140	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL537_02145	SM00354	helix_turn _helix lactose operon repressor
AL537_02175	SM00495	Chitin-binding domain type 3
AL537_02230	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL537_02275	SM00563	Phosphate acyltransferases
AL537_02310	SM00382	ATPases associated with a variety of cellular activities
AL537_02320	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL537_02335	SM00382	ATPases associated with a variety of cellular activities
AL537_02365	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL537_02365	SM00924	MgtE intracellular N domain
AL537_02395	SM00487	DEAD-like helicases superfamily
AL537_02395	SM00490	helicase superfamily c-terminal domain
AL537_02400	SM00670	Large family of predicted nucleotide-binding domains
AL537_02420	SM00316	Ribosomal protein S1-like RNA-binding domain
AL537_02490	SM00382	ATPases associated with a variety of cellular activities
AL537_02495	SM00028	Tetratricopeptide repeats
AL537_02505	SM00965	Secretin and TonB N terminus short domain
AL537_02525	SM00052	Putative diguanylate phosphodiesterase
AL537_02525	SM00267	diguanylate cyclase
AL537_02535	SM00421	helix_turn_helix, Lux Regulon
AL537_02570	SM01018	B12 binding domain
AL537_02690	SM01005	Alanine racemase, C-terminal domain
AL537_02750	SM00965	Secretin and TonB N terminus short domain
AL537_02825	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AL537_02865	SM00919	Malic enzyme, NAD binding domain
AL537_02865	SM01274	AL537_02865
AL537_02885	SM00838	Elongation factor G C-terminus
AL537_02885	SM00889	Elongation factor G, domain IV
AL537_02925	SM00320	WD40 repeats
AL537_02960	SM00382	ATPases associated with a variety of cellular activities
AL537_02985	SM00100	Cyclic nucleotide-monophosphate binding domain
AL537_02985	SM00419	helix_turn_helix, cAMP Regulatory protein
AL537_02990	SM01150	AL537_02990
AL537_03035	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AL537_03040	SM00316	Ribosomal protein S1-like RNA-binding domain
AL537_03040	SM00357	Cold shock protein domain
AL537_03040	SM00955	AL537_03040
AL537_03055	SM00671	Sel1-like repeats.
AL537_03065	SM00788	Adenylosuccinate synthetase
AL537_03075	SM00244	prohibitin homologues
AL537_03080	SM00244	prohibitin homologues
AL537_03100	SM00853	MutL C terminal dimerisation domain
AL537_03100	SM01340	AL537_03100
AL537_03105	SM00257	Lysin motif
AL537_03105	SM00646	AL537_03105
AL537_03185	SM00479	AL537_03185
AL537_03215	SM00450	Rhodanese Homology Domain
AL537_03230	SM00971	Serine acetyltransferase, N-terminal
AL537_03285	SM00841	Elongation factor P, C-terminal
AL537_03285	SM01185	AL537_03285
AL537_03310	SM00883	Chaperonin 10 Kd subunit
AL537_03335	SM00448	cheY-homologous receiver domain
AL537_03335	SM00862	Transcriptional regulatory protein, C terminal
AL537_03340	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_03340	SM00387	Histidine kinase-like ATPases
AL537_03340	SM00388	His Kinase A (phosphoacceptor) domain
AL537_03375	SM00421	helix_turn_helix, Lux Regulon
AL537_03375	SM00448	cheY-homologous receiver domain
AL537_03380	SM01091	Transporter associated domain
AL537_03420	SM00100	Cyclic nucleotide-monophosphate binding domain
AL537_03425	SM00479	AL537_03425
AL537_03445	SM00878	Biotin carboxylase C-terminal domain
AL537_03475	SM00382	ATPases associated with a variety of cellular activities
AL537_03545	SM00862	Transcriptional regulatory protein, C terminal
AL537_03550	SM00422	helix_turn_helix, mercury resistance
AL537_03560	SM00798	AICARFT/IMPCHase bienzyme
AL537_03560	SM00851	MGS-like domain
AL537_03570	SM01209	AL537_03570
AL537_03570	SM01210	AL537_03570
AL537_03580	SM00411	bacterial (prokaryotic) histone like domain
AL537_03585	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL537_03600	SM00986	Uracil DNA glycosylase superfamily
AL537_03600	SM00987	UreE urease accessory protein, C-terminal domain 
AL537_03620	SM00663	RNA polymerase I subunit A N-terminus
AL537_03645	SM00649	Ribosomal protein L11/L12
AL537_03650	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AL537_03650	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AL537_03715	SM00155	Phospholipase D. Active site motifs.
AL537_03780	SM00360	RNA recognition motif
AL537_03845	SM00563	Phosphate acyltransferases
AL537_03870	SM00450	Rhodanese Homology Domain
AL537_03890	SM00382	ATPases associated with a variety of cellular activities
AL537_03895	SM00382	ATPases associated with a variety of cellular activities
AL537_03895	SM00962	SRP54-type protein, GTPase domain
AL537_03895	SM00963	SRP54-type protein, helical bundle domain
AL537_03960	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL537_03965	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL537_03970	SM00052	Putative diguanylate phosphodiesterase
AL537_04000	SM01144	AL537_04000
AL537_04005	SM00052	Putative diguanylate phosphodiesterase
AL537_04005	SM00267	diguanylate cyclase
AL537_04005	SM00897	FIST N domain
AL537_04005	SM01204	AL537_04005
AL537_04040	SM01219	AL537_04040
AL537_04065	SM00028	Tetratricopeptide repeats
AL537_04130	SM00357	Cold shock protein domain
AL537_04130	SM00382	ATPases associated with a variety of cellular activities
AL537_04130	SM00959	Rho termination factor, N-terminal domain
AL537_04140	SM00487	DEAD-like helicases superfamily
AL537_04140	SM00490	helicase superfamily c-terminal domain
AL537_04160	SM00341	Helicase and RNase D C-terminal
AL537_04160	SM00487	DEAD-like helicases superfamily
AL537_04160	SM00490	helicase superfamily c-terminal domain
AL537_04160	SM00956	AL537_04160
AL537_04170	SM00342	helix_turn_helix, arabinose operon control protein
AL537_04230	SM00876	Biotin and Thiamin Synthesis associated domain
AL537_04345	SM01001	AIR carboxylase
AL537_04370	SM00257	Lysin motif
AL537_04440	SM00563	Phosphate acyltransferases
AL537_04450	SM00382	ATPases associated with a variety of cellular activities
AL537_04490	SM00062	Bacterial periplasmic substrate-binding proteins
AL537_04510	SM00382	ATPases associated with a variety of cellular activities
AL537_04550	SM00470	ParB-like nuclease domain
AL537_04565	SM01228	AL537_04565
AL537_04585	SM01234	AL537_04585
AL537_04600	SM00382	ATPases associated with a variety of cellular activities
AL537_04610	SM00062	Bacterial periplasmic substrate-binding proteins
AL537_04610	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AL537_04620	SM00382	ATPases associated with a variety of cellular activities
AL537_04620	SM00760	Bacterial dnaA protein helix-turn-helix domain
AL537_04625	SM00480	DNA polymerase III beta subunit
AL537_04635	SM00387	Histidine kinase-like ATPases
AL537_04635	SM00433	TopoisomeraseII
AL537_04660	SM00642	Alpha-amylase domain
AL537_04665	SM00836	DALR anticodon binding domain
AL537_04700	SM00829	Enoylreductase
AL537_04840	SM00382	ATPases associated with a variety of cellular activities
AL537_04890	SM00220	Serine/Threonine protein kinases, catalytic domain
AL537_04895	SM00354	helix_turn _helix lactose operon repressor
AL537_04960	SM00344	helix_turn_helix ASNC type
AL537_04965	SM00052	Putative diguanylate phosphodiesterase
AL537_04965	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL537_04965	SM00091	PAS domain
AL537_04965	SM00267	diguanylate cyclase
AL537_05005	SM00382	ATPases associated with a variety of cellular activities
AL537_05010	SM00749	bacterial OsmY and nodulation domain
AL537_05030	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AL537_05030	SM00195	Dual specificity phosphatase, catalytic domain
AL537_05030	SM00404	Protein tyrosine phosphatase, catalytic domain motif
AL537_05065	SM00052	Putative diguanylate phosphodiesterase
AL537_05065	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL537_05065	SM00091	PAS domain
AL537_05065	SM00267	diguanylate cyclase
AL537_05125	SM01004	Delta-aminolevulinic acid dehydratase
AL537_05140	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AL537_05140	SM00474	3'-5' exonuclease
AL537_05140	SM00475	5'-3' exonuclease
AL537_05140	SM00482	DNA polymerase A domain
AL537_05175	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL537_05185	SM00052	Putative diguanylate phosphodiesterase
AL537_05185	SM00267	diguanylate cyclase
AL537_05185	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_05190	SM00382	ATPases associated with a variety of cellular activities
AL537_05190	SM00448	cheY-homologous receiver domain
AL537_05195	SM00091	PAS domain
AL537_05195	SM00387	Histidine kinase-like ATPases
AL537_05195	SM00388	His Kinase A (phosphoacceptor) domain
AL537_05205	SM01230	AL537_05205
AL537_05260	SM00363	S4 RNA-binding domain
AL537_05275	SM00382	ATPases associated with a variety of cellular activities
AL537_05355	SM00316	Ribosomal protein S1-like RNA-binding domain
AL537_05355	SM00732	Likely ribonuclease with RNase H fold.
AL537_05375	SM00448	cheY-homologous receiver domain
AL537_05375	SM00862	Transcriptional regulatory protein, C terminal
AL537_05380	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_05380	SM00387	Histidine kinase-like ATPases
AL537_05380	SM00388	His Kinase A (phosphoacceptor) domain
AL537_05390	SM00487	DEAD-like helicases superfamily
AL537_05390	SM00490	helicase superfamily c-terminal domain
AL537_05400	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL537_05400	SM00954	Region found in RelA / SpoT proteins
AL537_05405	SM01409	AL537_05405
AL537_05410	SM00072	Guanylate kinase homologues.
AL537_05415	SM00028	Tetratricopeptide repeats
AL537_05470	SM00382	ATPases associated with a variety of cellular activities
AL537_05475	SM00382	ATPases associated with a variety of cellular activities
AL537_05520	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_05520	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_05520	SM01049	AL537_05520
AL537_05550	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AL537_05550	SM01232	AL537_05550
AL537_05560	SM00672	Putative lipopolysaccharide-modifying enzyme.
AL537_05615	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL537_05695	SM00984	UDP binding domain
AL537_05765	SM00849	Metallo-beta-lactamase superfamily
AL537_05765	SM01027	Beta-Casp domain
AL537_05775	SM00984	UDP binding domain
AL537_05830	SM00984	UDP binding domain
AL537_05890	SM00382	ATPases associated with a variety of cellular activities
AL537_05890	SM01086	C-terminal, D2-small domain, of ClpB protein
AL537_05905	SM00354	helix_turn _helix lactose operon repressor
AL537_05910	SM00487	DEAD-like helicases superfamily
AL537_05910	SM00490	helicase superfamily c-terminal domain
AL537_05925	SM01403	AL537_05925
AL537_05945	SM01382	AL537_05945
AL537_05945	SM01383	AL537_05945
AL537_05960	SM00322	K homology RNA-binding domain
AL537_05980	SM01374	AL537_05980
AL537_05985	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AL537_06050	SM00363	S4 RNA-binding domain
AL537_06050	SM01390	AL537_06050
AL537_06055	SM00662	RNA polymerases D
AL537_06085	SM00487	DEAD-like helicases superfamily
AL537_06085	SM00490	helicase superfamily c-terminal domain
AL537_06140	SM00382	ATPases associated with a variety of cellular activities
AL537_06225	SM00382	ATPases associated with a variety of cellular activities
AL537_06325	SM00650	Ribosomal RNA adenine dimethylases
AL537_06345	SM00271	DnaJ molecular chaperone homology domain
AL537_06365	SM01329	AL537_06365
AL537_06370	SM00917	LeuA allosteric (dimerisation) domain
AL537_06385	SM00014	Acid phosphatase homologues
AL537_06415	SM00267	diguanylate cyclase
AL537_06420	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_06435	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL537_06435	SM01134	AL537_06435
AL537_06450	SM00448	cheY-homologous receiver domain
AL537_06450	SM00862	Transcriptional regulatory protein, C terminal
AL537_06455	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_06455	SM00387	Histidine kinase-like ATPases
AL537_06455	SM00388	His Kinase A (phosphoacceptor) domain
AL537_06470	SM01120	AL537_06470
AL537_06505	SM00563	Phosphate acyltransferases
AL537_06545	SM00400	zinc finger
AL537_06545	SM00493	AL537_06545
AL537_06545	SM00766	DNA primase DnaG DnaB-binding
AL537_06570	SM01207	AL537_06570
AL537_06575	SM00905	Dihydroneopterin aldolase
AL537_06595	SM00382	ATPases associated with a variety of cellular activities
AL537_06610	SM00287	Bacterial SH3 domain homologues
AL537_06625	SM00880	AL537_06625
AL537_06625	SM01118	AL537_06625
AL537_06635	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_06675	SM00387	Histidine kinase-like ATPases
AL537_06675	SM00433	TopoisomeraseII
AL537_06680	SM00434	DNA Topoisomerase IV
AL537_06685	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL537_06690	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL537_06750	SM00749	bacterial OsmY and nodulation domain
AL537_06835	SM00842	Cell division protein FtsA
AL537_06840	SM00864	Tubulin/FtsZ family, GTPase domain
AL537_06840	SM00865	Tubulin/FtsZ family, C-terminal domain
AL537_06855	SM00957	SecA DEAD-like domain
AL537_06855	SM00958	SecA preprotein cross-linking domain
AL537_06870	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AL537_06875	SM00851	MGS-like domain
AL537_06875	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AL537_06955	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL537_06960	SM00091	PAS domain
AL537_06960	SM00267	diguanylate cyclase
AL537_06965	SM00073	Histidine Phosphotransfer domain
AL537_06965	SM00091	PAS domain
AL537_06965	SM00387	Histidine kinase-like ATPases
AL537_06965	SM00388	His Kinase A (phosphoacceptor) domain
AL537_06965	SM00448	cheY-homologous receiver domain
AL537_06975	SM00448	cheY-homologous receiver domain
AL537_06975	SM00862	Transcriptional regulatory protein, C terminal
AL537_07030	SM00518	AP endonuclease family 2
AL537_07040	SM00986	Uracil DNA glycosylase superfamily
AL537_07040	SM00987	UreE urease accessory protein, C-terminal domain 
AL537_07065	SM00487	DEAD-like helicases superfamily
AL537_07065	SM00490	helicase superfamily c-terminal domain
AL537_07110	SM00382	ATPases associated with a variety of cellular activities
AL537_07130	SM00927	DNA mismatch repair enzyme MutH
AL537_07140	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL537_07160	SM01154	AL537_07160
AL537_07175	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL537_07190	SM00904	Riboflavin kinase
AL537_07215	SM00226	Low molecular weight phosphatase family
AL537_07220	SM00448	cheY-homologous receiver domain
AL537_07220	SM00850	LytTr DNA-binding domain
AL537_07265	SM00830	Chorismate mutase type II
AL537_07280	SM00382	ATPases associated with a variety of cellular activities
AL537_07300	SM00830	Chorismate mutase type II
AL537_07310	SM00062	Bacterial periplasmic substrate-binding proteins
AL537_07320	SM00363	S4 RNA-binding domain
AL537_07330	SM00382	ATPases associated with a variety of cellular activities
AL537_07330	SM01086	C-terminal, D2-small domain, of ClpB protein
AL537_07410	SM00448	cheY-homologous receiver domain
AL537_07410	SM00862	Transcriptional regulatory protein, C terminal
AL537_07415	SM00091	PAS domain
AL537_07415	SM00387	Histidine kinase-like ATPases
AL537_07415	SM00388	His Kinase A (phosphoacceptor) domain
AL537_07445	SM00382	ATPases associated with a variety of cellular activities
AL537_07485	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL537_07495	SM00020	Trypsin-like serine protease
AL537_07510	SM01323	AL537_07510
AL537_07555	SM00271	DnaJ molecular chaperone homology domain
AL537_07580	SM00562	AL537_07580
AL537_07595	SM00530	Helix-turn-helix XRE-family like proteins 
AL537_07615	SM00564	beta-propeller repeat
AL537_07620	SM00382	ATPases associated with a variety of cellular activities
AL537_07640	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL537_07640	SM01240	AL537_07640
AL537_07655	SM00495	Chitin-binding domain type 3
AL537_07760	SM00530	Helix-turn-helix XRE-family like proteins 
AL537_07800	SM00857	Resolvase, N terminal domain
AL537_07810	SM00530	Helix-turn-helix XRE-family like proteins 
AL537_07820	SM00487	DEAD-like helicases superfamily
AL537_07905	SM00271	DnaJ molecular chaperone homology domain
AL537_07955	SM00062	Bacterial periplasmic substrate-binding proteins
AL537_07960	SM01211	AL537_07960
AL537_08015	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AL537_08065	SM00861	Transketolase, pyrimidine binding domain
AL537_08090	SM00981	AL537_08090
AL537_08115	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AL537_08115	SM00475	5'-3' exonuclease
AL537_08125	SM00267	diguanylate cyclase
AL537_08130	SM00028	Tetratricopeptide repeats
AL537_08160	SM00382	ATPases associated with a variety of cellular activities
AL537_08160	SM00930	AL537_08160
AL537_08170	SM00354	helix_turn _helix lactose operon repressor
AL537_08180	SM00642	Alpha-amylase domain
AL537_08190	SM00862	Transcriptional regulatory protein, C terminal
AL537_08205	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL537_08220	SM00936	Penicillin-binding protein 5, C-terminal domain 
AL537_08275	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL537_08275	SM01091	Transporter associated domain
AL537_08290	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL537_08420	SM01400	AL537_08420
AL537_08440	SM00937	AL537_08440
AL537_08475	SM00363	S4 RNA-binding domain
AL537_08480	SM00463	Small MutS-related domain
AL537_08505	SM01081	Putative carbohydrate binding domain
AL537_08590	SM00858	AL537_08590
AL537_08595	SM00260	Two component signalling adaptor domain
AL537_08595	SM00448	cheY-homologous receiver domain
AL537_08600	SM00138	Methyltransferase, chemotaxis proteins 
AL537_08645	SM00047	Lysozyme subfamily 2
AL537_08715	SM00771	ZipA, C-terminal domain (FtsZ-binding)
AL537_08720	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL537_08720	SM00292	breast cancer carboxy-terminal domain
AL537_08720	SM00532	Ligase N family
AL537_08745	SM00244	prohibitin homologues
AL537_08780	SM00938	Nitrogen regulatory protein P-II
AL537_08785	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL537_08815	SM00862	Transcriptional regulatory protein, C terminal
AL537_08820	SM00387	Histidine kinase-like ATPases
AL537_08840	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AL537_08950	SM00861	Transketolase, pyrimidine binding domain
AL537_08965	SM00881	CoA binding domain
AL537_08975	SM00382	ATPases associated with a variety of cellular activities
AL537_08985	SM00342	helix_turn_helix, arabinose operon control protein
AL537_08990	SM00899	AL537_08990
AL537_09010	SM00836	DALR anticodon binding domain
AL537_09010	SM01016	Arginyl tRNA synthetase N terminal dom
AL537_09040	SM00487	DEAD-like helicases superfamily
AL537_09040	SM00491	AL537_09040
AL537_09070	SM00474	3'-5' exonuclease
AL537_09125	SM00825	Beta-ketoacyl synthase
AL537_09130	SM00822	AL537_09130
AL537_09140	SM00825	Beta-ketoacyl synthase
AL537_09200	SM00563	Phosphate acyltransferases
AL537_09230	SM01091	Transporter associated domain
AL537_09235	SM00487	DEAD-like helicases superfamily
AL537_09235	SM00490	helicase superfamily c-terminal domain
AL537_09250	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
AL537_09285	SM00382	ATPases associated with a variety of cellular activities
AL537_09285	SM00448	cheY-homologous receiver domain
AL537_09290	SM00387	Histidine kinase-like ATPases
AL537_09290	SM00388	His Kinase A (phosphoacceptor) domain
AL537_09310	SM00382	ATPases associated with a variety of cellular activities
AL537_09310	SM00994	ClpX C4-type zinc finger
AL537_09310	SM01086	C-terminal, D2-small domain, of ClpB protein
AL537_09315	SM00382	ATPases associated with a variety of cellular activities
AL537_09315	SM00464	Found in ATP-dependent protease La (LON)
AL537_09320	SM00411	bacterial (prokaryotic) histone like domain
AL537_09330	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL537_09340	SM01144	AL537_09340
AL537_09345	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL537_09350	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL537_09380	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AL537_09400	SM00563	Phosphate acyltransferases
AL537_09410	SM00978	AL537_09410
AL537_09475	SM00344	helix_turn_helix ASNC type
AL537_09505	SM00062	Bacterial periplasmic substrate-binding proteins
AL537_09505	SM00267	diguanylate cyclase
AL537_09520	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL537_09540	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_09540	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_09590	SM00487	DEAD-like helicases superfamily
AL537_09590	SM00490	helicase superfamily c-terminal domain
AL537_09590	SM00982	AL537_09590
AL537_09590	SM01058	CarD-like/TRCF domain
AL537_09605	SM00382	ATPases associated with a variety of cellular activities
AL537_09620	SM00849	Metallo-beta-lactamase superfamily
AL537_09625	SM00382	ATPases associated with a variety of cellular activities
AL537_09655	SM00763	PrkA AAA domain
AL537_09705	SM00382	ATPases associated with a variety of cellular activities
AL537_09710	SM00062	Bacterial periplasmic substrate-binding proteins
AL537_09710	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AL537_09725	SM01276	AL537_09725
AL537_09750	SM00491	AL537_09750
AL537_09775	SM00357	Cold shock protein domain
AL537_09785	SM00382	ATPases associated with a variety of cellular activities
AL537_09785	SM01086	C-terminal, D2-small domain, of ClpB protein
AL537_09790	SM00316	Ribosomal protein S1-like RNA-binding domain
AL537_09820	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AL537_09820	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AL537_09820	SM00493	AL537_09820
AL537_09855	SM00354	helix_turn _helix lactose operon repressor
AL537_09865	SM00448	cheY-homologous receiver domain
AL537_09865	SM00862	Transcriptional regulatory protein, C terminal
AL537_09950	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL537_09955	SM00382	ATPases associated with a variety of cellular activities
AL537_10010	SM00028	Tetratricopeptide repeats
AL537_10045	SM00387	Histidine kinase-like ATPases
AL537_10045	SM00388	His Kinase A (phosphoacceptor) domain
AL537_10045	SM00448	cheY-homologous receiver domain
AL537_10060	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_10060	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_10075	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL537_10105	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_10130	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AL537_10130	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AL537_10135	SM00344	helix_turn_helix ASNC type
AL537_10140	SM00843	AL537_10140
AL537_10150	SM00382	ATPases associated with a variety of cellular activities
AL537_10180	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL537_10180	SM00876	Biotin and Thiamin Synthesis associated domain
AL537_10275	SM00528	Domain in histone-like proteins of HNS family
AL537_10285	SM00382	ATPases associated with a variety of cellular activities
AL537_10335	SM00052	Putative diguanylate phosphodiesterase
AL537_10350	SM00840	AL537_10350
AL537_10425	SM01131	AL537_10425
AL537_10435	SM00382	ATPases associated with a variety of cellular activities
AL537_10440	SM00382	ATPases associated with a variety of cellular activities
AL537_10460	SM00382	ATPases associated with a variety of cellular activities
AL537_10515	SM00155	Phospholipase D. Active site motifs.
AL537_10545	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL537_10545	SM00382	ATPases associated with a variety of cellular activities
AL537_10565	SM00382	ATPases associated with a variety of cellular activities
AL537_10610	SM00387	Histidine kinase-like ATPases
AL537_10615	SM00448	cheY-homologous receiver domain
AL537_10615	SM00862	Transcriptional regulatory protein, C terminal
AL537_10625	SM00487	DEAD-like helicases superfamily
AL537_10625	SM00490	helicase superfamily c-terminal domain
AL537_10630	SM00363	S4 RNA-binding domain
AL537_10685	SM00382	ATPases associated with a variety of cellular activities
AL537_10775	SM00448	cheY-homologous receiver domain
AL537_10780	SM00387	Histidine kinase-like ATPases
AL537_10800	SM00382	ATPases associated with a variety of cellular activities
AL537_10805	SM00382	ATPases associated with a variety of cellular activities
AL537_10830	SM00267	diguanylate cyclase
AL537_10845	SM00919	Malic enzyme, NAD binding domain
AL537_10845	SM01274	AL537_10845
AL537_10850	SM00487	DEAD-like helicases superfamily
AL537_10850	SM00490	helicase superfamily c-terminal domain
AL537_10935	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_10935	SM00866	AL537_10935
AL537_10950	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AL537_10975	SM00530	Helix-turn-helix XRE-family like proteins 
AL537_11005	SM00873	B3/4 domain
AL537_11005	SM00874	tRNA synthetase B5 domain
AL537_11005	SM00896	Ferredoxin-fold anticodon binding domain
AL537_11015	SM00411	bacterial (prokaryotic) histone like domain
AL537_11050	SM00479	AL537_11050
AL537_11060	SM00954	Region found in RelA / SpoT proteins
AL537_11285	SM00855	Phosphoglycerate mutase family
AL537_11305	SM00382	ATPases associated with a variety of cellular activities
AL537_11350	SM00245	tail specific protease
AL537_11390	SM01130	AL537_11390
AL537_11395	SM00382	ATPases associated with a variety of cellular activities
AL537_11420	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
AL537_11430	SM00382	ATPases associated with a variety of cellular activities
AL537_11435	SM00382	ATPases associated with a variety of cellular activities
AL537_11510	SM00052	Putative diguanylate phosphodiesterase
AL537_11520	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL537_11540	SM01266	AL537_11540
AL537_11555	SM00387	Histidine kinase-like ATPases
AL537_11555	SM00388	His Kinase A (phosphoacceptor) domain
AL537_11555	SM00448	cheY-homologous receiver domain
AL537_11560	SM00052	Putative diguanylate phosphodiesterase
AL537_11560	SM00267	diguanylate cyclase
AL537_11570	SM00028	Tetratricopeptide repeats
AL537_11645	SM00387	Histidine kinase-like ATPases
AL537_11645	SM00388	His Kinase A (phosphoacceptor) domain
AL537_11650	SM00448	cheY-homologous receiver domain
AL537_11650	SM00862	Transcriptional regulatory protein, C terminal
AL537_11660	SM00822	AL537_11660
AL537_11665	SM01236	AL537_11665
AL537_11690	SM00382	ATPases associated with a variety of cellular activities
AL537_11695	SM00100	Cyclic nucleotide-monophosphate binding domain
AL537_11695	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL537_11700	SM00479	AL537_11700
AL537_11735	SM00028	Tetratricopeptide repeats
AL537_11760	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL537_11760	SM01134	AL537_11760
AL537_11800	SM00100	Cyclic nucleotide-monophosphate binding domain
AL537_11800	SM00387	Histidine kinase-like ATPases
AL537_11805	SM00448	cheY-homologous receiver domain
AL537_11810	SM00052	Putative diguanylate phosphodiesterase
AL537_11810	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL537_11810	SM00091	PAS domain
AL537_11810	SM00267	diguanylate cyclase
AL537_11815	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL537_11845	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
AL537_11850	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL537_11875	SM00382	ATPases associated with a variety of cellular activities
AL537_11900	SM00382	ATPases associated with a variety of cellular activities
AL537_11905	SM00382	ATPases associated with a variety of cellular activities
AL537_11945	SM00267	diguanylate cyclase
AL537_11945	SM01079	AL537_11945
AL537_11950	SM00479	AL537_11950
AL537_11985	SM00382	ATPases associated with a variety of cellular activities
AL537_11985	SM00487	DEAD-like helicases superfamily
AL537_11985	SM00490	helicase superfamily c-terminal domain
AL537_11985	SM00847	Helicase associated domain (HA2)  Add an annotation
AL537_12060	SM00382	ATPases associated with a variety of cellular activities
AL537_12060	SM00448	cheY-homologous receiver domain
AL537_12120	SM00448	cheY-homologous receiver domain
AL537_12125	SM00267	diguanylate cyclase
AL537_12140	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_12170	SM01144	AL537_12170
AL537_12185	SM00852	Probable molybdopterin binding domain
AL537_12195	SM00382	ATPases associated with a variety of cellular activities
AL537_12210	SM00382	ATPases associated with a variety of cellular activities
AL537_12210	SM00448	cheY-homologous receiver domain
AL537_12215	SM00387	Histidine kinase-like ATPases
AL537_12215	SM00388	His Kinase A (phosphoacceptor) domain
AL537_12225	SM00382	ATPases associated with a variety of cellular activities
AL537_12260	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AL537_12320	SM00382	ATPases associated with a variety of cellular activities
AL537_12350	SM00100	Cyclic nucleotide-monophosphate binding domain
AL537_12350	SM00419	helix_turn_helix, cAMP Regulatory protein
AL537_12400	SM00897	FIST N domain
AL537_12400	SM01204	AL537_12400
AL537_12405	SM00387	Histidine kinase-like ATPases
AL537_12405	SM00388	His Kinase A (phosphoacceptor) domain
AL537_12405	SM00448	cheY-homologous receiver domain
AL537_12640	SM00382	ATPases associated with a variety of cellular activities
AL537_12650	SM00981	AL537_12650
AL537_12860	SM00507	HNH nucleases
AL537_12940	SM00482	DNA polymerase A domain
AL537_12945	SM00493	AL537_12945
AL537_12945	SM00778	Zinc-binding domain of primase-helicase
AL537_13000	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL537_13000	SM00245	tail specific protease
AL537_13005	SM00945	ProQ/FINO family
AL537_13015	SM00382	ATPases associated with a variety of cellular activities
AL537_13035	SM00316	Ribosomal protein S1-like RNA-binding domain
AL537_13070	SM00062	Bacterial periplasmic substrate-binding proteins
AL537_13085	SM00382	ATPases associated with a variety of cellular activities
AL537_13110	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_13115	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AL537_13135	SM00112	Cadherin repeats.
AL537_13135	SM00237	Domains in Na-Ca exchangers and integrin-beta4
AL537_13135	SM00327	von Willebrand factor (vWF) type A domain
AL537_13135	SM00736	Dystroglycan-type cadherin-like domains.
AL537_13155	SM00028	Tetratricopeptide repeats
AL537_13155	SM00267	diguanylate cyclase
AL537_13180	SM00020	Trypsin-like serine protease
AL537_13180	SM00495	Chitin-binding domain type 3
AL537_13215	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_13215	SM00895	AL537_13215
AL537_13315	SM00382	ATPases associated with a variety of cellular activities
AL537_13370	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL537_13475	SM00342	helix_turn_helix, arabinose operon control protein
AL537_13500	SM00382	ATPases associated with a variety of cellular activities
AL537_13525	SM01350	AL537_13525
AL537_13540	SM00342	helix_turn_helix, arabinose operon control protein
AL537_13540	SM00871	Bacterial transcription activator, effector binding domain
AL537_13550	SM00448	cheY-homologous receiver domain
AL537_13555	SM00091	PAS domain
AL537_13555	SM00387	Histidine kinase-like ATPases
AL537_13645	SM00155	Phospholipase D. Active site motifs.
AL537_13690	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AL537_13770	SM00052	Putative diguanylate phosphodiesterase
AL537_13785	SM00422	helix_turn_helix, mercury resistance
AL537_13815	SM01068	Putative carbohydrate binding domain
AL537_13820	SM00100	Cyclic nucleotide-monophosphate binding domain
AL537_13820	SM00419	helix_turn_helix, cAMP Regulatory protein
AL537_14170	SM00357	Cold shock protein domain
AL537_14240	SM00287	Bacterial SH3 domain homologues
AL537_14285	SM00091	PAS domain
AL537_14285	SM00382	ATPases associated with a variety of cellular activities
AL537_14320	SM00387	Histidine kinase-like ATPases
AL537_14320	SM00388	His Kinase A (phosphoacceptor) domain
AL537_14320	SM00448	cheY-homologous receiver domain
AL537_14345	SM00052	Putative diguanylate phosphodiesterase
AL537_14615	SM00530	Helix-turn-helix XRE-family like proteins 
AL537_14650	SM00357	Cold shock protein domain
AL537_14675	SM00052	Putative diguanylate phosphodiesterase
AL537_14675	SM00448	cheY-homologous receiver domain
AL537_14680	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_14680	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_14695	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_14720	SM00100	Cyclic nucleotide-monophosphate binding domain
AL537_14720	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL537_14725	SM00479	AL537_14725
AL537_14730	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_14730	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_14740	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL537_14745	SM00421	helix_turn_helix, Lux Regulon
AL537_14745	SM00448	cheY-homologous receiver domain
AL537_14750	SM00387	Histidine kinase-like ATPases
AL537_14750	SM01049	AL537_14750
AL537_14780	SM00849	Metallo-beta-lactamase superfamily
AL537_14870	SM00434	DNA Topoisomerase IV
AL537_14895	SM00852	Probable molybdopterin binding domain
AL537_14950	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL537_14950	SM00465	GIY-YIG type nucleases (URI domain)
AL537_14955	SM00421	helix_turn_helix, Lux Regulon
AL537_14955	SM00448	cheY-homologous receiver domain
AL537_14960	SM00486	DNA polymerase type-B family
AL537_14970	SM00841	Elongation factor P, C-terminal
AL537_14970	SM01185	AL537_14970
AL537_14980	SM00363	S4 RNA-binding domain
AL537_14995	SM00481	DNA polymerase alpha chain like domain
AL537_15035	SM00100	Cyclic nucleotide-monophosphate binding domain
AL537_15035	SM00419	helix_turn_helix, cAMP Regulatory protein
AL537_15060	SM00387	Histidine kinase-like ATPases
AL537_15060	SM00388	His Kinase A (phosphoacceptor) domain
AL537_15060	SM00448	cheY-homologous receiver domain
AL537_15115	SM00052	Putative diguanylate phosphodiesterase
AL537_15115	SM00091	PAS domain
AL537_15120	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL537_15135	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_15135	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_15145	SM00448	cheY-homologous receiver domain
AL537_15145	SM00862	Transcriptional regulatory protein, C terminal
AL537_15150	SM00387	Histidine kinase-like ATPases
AL537_15150	SM00388	His Kinase A (phosphoacceptor) domain
AL537_15155	SM00220	Serine/Threonine protein kinases, catalytic domain
AL537_15155	SM00364	Leucine-rich repeats, bacterial type
AL537_15155	SM00369	Leucine-rich repeats, typical (most populated) subfamily
AL537_15195	SM00342	helix_turn_helix, arabinose operon control protein
AL537_15205	SM00382	ATPases associated with a variety of cellular activities
AL537_15270	SM00421	helix_turn_helix, Lux Regulon
AL537_15270	SM00448	cheY-homologous receiver domain
AL537_15275	SM00387	Histidine kinase-like ATPases
AL537_15275	SM00388	His Kinase A (phosphoacceptor) domain
AL537_15290	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AL537_15330	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL537_15335	SM00028	Tetratricopeptide repeats
AL537_15345	SM00411	bacterial (prokaryotic) histone like domain
AL537_15350	SM00316	Ribosomal protein S1-like RNA-binding domain
AL537_15365	SM00822	AL537_15365
AL537_15380	SM00481	DNA polymerase alpha chain like domain
AL537_15385	SM00260	Two component signalling adaptor domain
AL537_15385	SM00448	cheY-homologous receiver domain
AL537_15455	SM00825	Beta-ketoacyl synthase
AL537_15465	SM00822	AL537_15465
AL537_15470	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AL537_15500	SM00363	S4 RNA-binding domain
AL537_15505	SM00316	Ribosomal protein S1-like RNA-binding domain
AL537_15520	SM00226	Low molecular weight phosphatase family
AL537_15555	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_15580	SM00267	diguanylate cyclase
AL537_15585	SM00642	Alpha-amylase domain
AL537_15590	SM00382	ATPases associated with a variety of cellular activities
AL537_15635	SM00382	ATPases associated with a variety of cellular activities
AL537_15640	SM00382	ATPases associated with a variety of cellular activities
AL537_15675	SM00852	Probable molybdopterin binding domain
AL537_15680	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL537_15695	SM00382	ATPases associated with a variety of cellular activities
AL537_15695	SM00448	cheY-homologous receiver domain
AL537_15700	SM00487	DEAD-like helicases superfamily
AL537_15700	SM00490	helicase superfamily c-terminal domain
AL537_15735	SM00900	AL537_15735
AL537_15745	SM00478	endonuclease III
AL537_15745	SM00525	AL537_15745
AL537_15770	SM00479	AL537_15770
AL537_15980	SM00974	AL537_15980
AL537_16050	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AL537_16105	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AL537_16105	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AL537_16105	SM00493	AL537_16105
AL537_16130	SM00870	AL537_16130
AL537_16150	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL537_16185	SM00098	Alkaline phosphatase homologues
AL537_16250	SM00493	AL537_16250
AL537_16260	SM00382	ATPases associated with a variety of cellular activities
AL537_16280	SM00448	cheY-homologous receiver domain
AL537_16330	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AL537_16345	SM00825	Beta-ketoacyl synthase
AL537_16395	SM00463	Small MutS-related domain
AL537_16400	SM00855	Phosphoglycerate mutase family
AL537_16490	SM00382	ATPases associated with a variety of cellular activities
AL537_16500	SM00260	Two component signalling adaptor domain
AL537_16505	SM00260	Two component signalling adaptor domain
AL537_16515	SM00448	cheY-homologous receiver domain
AL537_16520	SM00073	Histidine Phosphotransfer domain
AL537_16520	SM00260	Two component signalling adaptor domain
AL537_16520	SM00387	Histidine kinase-like ATPases
AL537_16520	SM01231	AL537_16520
AL537_16530	SM00448	cheY-homologous receiver domain
AL537_16545	SM00382	ATPases associated with a variety of cellular activities
AL537_16545	SM00962	SRP54-type protein, GTPase domain
AL537_16605	SM00382	ATPases associated with a variety of cellular activities
AL537_16620	SM00448	cheY-homologous receiver domain
AL537_16620	SM00862	Transcriptional regulatory protein, C terminal
AL537_16675	SM00382	ATPases associated with a variety of cellular activities
AL537_16690	SM00342	helix_turn_helix, arabinose operon control protein
AL537_16690	SM00871	Bacterial transcription activator, effector binding domain
AL537_16700	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL537_16750	SM00829	Enoylreductase
AL537_16755	SM00342	helix_turn_helix, arabinose operon control protein
AL537_16785	SM00342	helix_turn_helix, arabinose operon control protein
AL537_16795	SM00382	ATPases associated with a variety of cellular activities
AL537_16805	SM00344	helix_turn_helix ASNC type
AL537_16820	SM00360	RNA recognition motif
AL537_16845	SM00342	helix_turn_helix, arabinose operon control protein
AL537_16850	SM00421	helix_turn_helix, Lux Regulon
AL537_16860	SM00387	Histidine kinase-like ATPases
AL537_16865	SM00448	cheY-homologous receiver domain
AL537_16880	SM00052	Putative diguanylate phosphodiesterase
AL537_16880	SM00267	diguanylate cyclase
AL537_16885	SM00382	ATPases associated with a variety of cellular activities
AL537_16970	SM00470	ParB-like nuclease domain
AL537_16990	SM00382	ATPases associated with a variety of cellular activities
AL537_16995	SM00382	ATPases associated with a variety of cellular activities
AL537_17015	SM00387	Histidine kinase-like ATPases
AL537_17015	SM00388	His Kinase A (phosphoacceptor) domain
AL537_17015	SM00448	cheY-homologous receiver domain
AL537_17040	SM00382	ATPases associated with a variety of cellular activities
AL537_17060	SM00387	Histidine kinase-like ATPases
AL537_17065	SM00448	cheY-homologous receiver domain
AL537_17065	SM00850	LytTr DNA-binding domain
AL537_17080	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_17080	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_17080	SM01049	AL537_17080
AL537_17105	SM00382	ATPases associated with a variety of cellular activities
AL537_17110	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_17160	SM00342	helix_turn_helix, arabinose operon control protein
AL537_17160	SM01009	AlkA N-terminal domain
AL537_17205	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
AL537_17205	SM00495	Chitin-binding domain type 3
AL537_17205	SM00636	AL537_17205
AL537_17225	SM00267	diguanylate cyclase
AL537_17245	SM00849	Metallo-beta-lactamase superfamily
AL537_17265	SM00267	diguanylate cyclase
AL537_17280	SM00829	Enoylreductase
AL537_17310	SM00344	helix_turn_helix ASNC type
AL537_17315	SM00495	Chitin-binding domain type 3
AL537_17370	SM00506	Appr-1"-p processing enzyme
AL537_17445	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_17500	SM00014	Acid phosphatase homologues
AL537_17530	SM00382	ATPases associated with a variety of cellular activities
AL537_17635	SM00448	cheY-homologous receiver domain
AL537_17635	SM00862	Transcriptional regulatory protein, C terminal
AL537_17640	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_17640	SM00387	Histidine kinase-like ATPases
AL537_17640	SM00388	His Kinase A (phosphoacceptor) domain
AL537_17710	SM00382	ATPases associated with a variety of cellular activities
AL537_17750	SM00849	Metallo-beta-lactamase superfamily
AL537_17775	SM00342	helix_turn_helix, arabinose operon control protein
AL537_17800	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL537_17800	SM00387	Histidine kinase-like ATPases
AL537_17805	SM00382	ATPases associated with a variety of cellular activities
AL537_17805	SM00448	cheY-homologous receiver domain
AL537_17810	SM00267	diguanylate cyclase
AL537_17900	SM00267	diguanylate cyclase
AL537_17900	SM01079	AL537_17900
AL537_17910	SM00530	Helix-turn-helix XRE-family like proteins 
AL537_17920	SM00267	diguanylate cyclase
AL537_17955	SM01266	AL537_17955
AL537_18015	SM01057	Eukaryotic-type carbonic anhydrase
AL537_18055	SM00354	helix_turn _helix lactose operon repressor
AL537_18080	SM00382	ATPases associated with a variety of cellular activities
AL537_18090	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_18090	SM00866	AL537_18090
AL537_18120	SM00631	AL537_18120
AL537_18195	SM00858	AL537_18195
AL537_18270	SM01240	AL537_18270
AL537_18285	SM00450	Rhodanese Homology Domain
AL537_18290	SM00883	Chaperonin 10 Kd subunit
AL537_18330	SM00342	helix_turn_helix, arabinose operon control protein
AL537_18400	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL537_18400	SM01134	AL537_18400
AL537_18470	SM00382	ATPases associated with a variety of cellular activities
AL537_18510	SM00838	Elongation factor G C-terminus
AL537_18510	SM00889	Elongation factor G, domain IV
AL537_18520	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AL537_18545	SM00422	helix_turn_helix, mercury resistance
AL537_18555	SM00028	Tetratricopeptide repeats
AL537_18560	SM01022	AL537_18560
AL537_18570	SM00155	Phospholipase D. Active site motifs.
AL537_18600	SM00382	ATPases associated with a variety of cellular activities
AL537_18625	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_18625	SM00866	AL537_18625
AL537_18655	SM00421	helix_turn_helix, Lux Regulon
AL537_18675	SM00870	AL537_18675
AL537_18680	SM00788	Adenylosuccinate synthetase
AL537_18730	SM00344	helix_turn_helix ASNC type
AL537_18750	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_18765	SM00342	helix_turn_helix, arabinose operon control protein
AL537_18780	SM00829	Enoylreductase
AL537_18810	SM00487	DEAD-like helicases superfamily
AL537_18810	SM00490	helicase superfamily c-terminal domain
AL537_18855	SM00342	helix_turn_helix, arabinose operon control protein
AL537_18855	SM00871	Bacterial transcription activator, effector binding domain
AL537_18890	SM00822	AL537_18890
AL537_18905	SM00354	helix_turn _helix lactose operon repressor
AL537_18920	SM00640	Glycosyl hydrolases family 32
AL537_18945	SM00936	Penicillin-binding protein 5, C-terminal domain 
AL537_18975	SM00357	Cold shock protein domain
AL537_19020	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_19020	SM00387	Histidine kinase-like ATPases
AL537_19020	SM00388	His Kinase A (phosphoacceptor) domain
AL537_19025	SM00448	cheY-homologous receiver domain
AL537_19025	SM00862	Transcriptional regulatory protein, C terminal
AL537_19030	SM01065	Starch binding domain
AL537_19070	SM00563	Phosphate acyltransferases
AL537_19080	SM00530	Helix-turn-helix XRE-family like proteins 
AL537_19085	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL537_19100	SM00924	MgtE intracellular N domain
AL537_19120	SM00342	helix_turn_helix, arabinose operon control protein
AL537_19135	SM00448	cheY-homologous receiver domain
AL537_19135	SM00862	Transcriptional regulatory protein, C terminal
AL537_19140	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_19140	SM00387	Histidine kinase-like ATPases
AL537_19140	SM00388	His Kinase A (phosphoacceptor) domain
AL537_19150	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_19165	SM00344	helix_turn_helix ASNC type
AL537_19190	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL537_19195	SM00387	Histidine kinase-like ATPases
AL537_19195	SM00388	His Kinase A (phosphoacceptor) domain
AL537_19195	SM00448	cheY-homologous receiver domain
AL537_19220	SM00465	GIY-YIG type nucleases (URI domain)
AL537_19235	SM00387	Histidine kinase-like ATPases
AL537_19235	SM00388	His Kinase A (phosphoacceptor) domain
AL537_19235	SM00448	cheY-homologous receiver domain
AL537_19240	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL537_19265	SM00344	helix_turn_helix ASNC type
AL537_19320	SM00822	AL537_19320
AL537_19355	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AL537_19370	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_19370	SM00387	Histidine kinase-like ATPases
AL537_19375	SM00421	helix_turn_helix, Lux Regulon
AL537_19375	SM00448	cheY-homologous receiver domain
AL537_19410	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_19445	SM00091	PAS domain
AL537_19445	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_19450	SM00861	Transketolase, pyrimidine binding domain
AL537_19475	SM00636	AL537_19475
AL537_19480	SM00052	Putative diguanylate phosphodiesterase
AL537_19480	SM00267	diguanylate cyclase
AL537_19485	SM00450	Rhodanese Homology Domain
AL537_19510	SM00852	Probable molybdopterin binding domain
AL537_19550	SM00448	cheY-homologous receiver domain
AL537_19565	SM01240	AL537_19565
AL537_19590	SM00028	Tetratricopeptide repeats
AL537_19590	SM00530	Helix-turn-helix XRE-family like proteins 
AL537_19610	SM00736	Dystroglycan-type cadherin-like domains.
AL537_19615	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_19670	SM00382	ATPases associated with a variety of cellular activities
AL537_19675	SM00382	ATPases associated with a variety of cellular activities
AL537_19675	SM01086	C-terminal, D2-small domain, of ClpB protein
AL537_19710	SM00220	Serine/Threonine protein kinases, catalytic domain
AL537_19745	SM00344	helix_turn_helix ASNC type
AL537_19765	SM00240	Forkhead associated domain
AL537_19865	SM00342	helix_turn_helix, arabinose operon control protein
AL537_19875	SM00822	AL537_19875
AL537_19925	SM00893	Electron transfer flavoprotein domain
AL537_19930	SM00893	Electron transfer flavoprotein domain
AL537_19945	SM00382	ATPases associated with a variety of cellular activities
AL537_19970	SM00382	ATPases associated with a variety of cellular activities
AL537_20035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL537_20040	SM01266	AL537_20040
AL537_20055	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL537_20055	SM00091	PAS domain
AL537_20055	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_20055	SM00387	Histidine kinase-like ATPases
AL537_20055	SM00388	His Kinase A (phosphoacceptor) domain
AL537_20055	SM00448	cheY-homologous receiver domain
AL537_20065	SM00878	Biotin carboxylase C-terminal domain
AL537_20085	SM00422	helix_turn_helix, mercury resistance
AL537_20120	SM00822	AL537_20120
AL537_20125	SM00267	diguanylate cyclase
AL537_20155	SM00382	ATPases associated with a variety of cellular activities
AL537_20170	SM00244	prohibitin homologues
AL537_20180	SM00052	Putative diguanylate phosphodiesterase
AL537_20180	SM00091	PAS domain
AL537_20180	SM00267	diguanylate cyclase
AL537_20190	SM00387	Histidine kinase-like ATPases
AL537_20190	SM00388	His Kinase A (phosphoacceptor) domain
AL537_20190	SM00448	cheY-homologous receiver domain
AL537_20200	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AL537_20250	SM00052	Putative diguanylate phosphodiesterase
AL537_20250	SM00267	diguanylate cyclase
AL537_20260	SM00382	ATPases associated with a variety of cellular activities
AL537_20280	SM00354	helix_turn _helix lactose operon repressor
AL537_20320	SM00382	ATPases associated with a variety of cellular activities
AL537_20325	SM00422	helix_turn_helix, mercury resistance
AL537_20330	SM00342	helix_turn_helix, arabinose operon control protein
AL537_20375	SM00851	MGS-like domain
AL537_20385	SM00073	Histidine Phosphotransfer domain
AL537_20385	SM00387	Histidine kinase-like ATPases
AL537_20385	SM00388	His Kinase A (phosphoacceptor) domain
AL537_20385	SM00448	cheY-homologous receiver domain
AL537_20400	SM00862	Transcriptional regulatory protein, C terminal
AL537_20440	SM00327	von Willebrand factor (vWF) type A domain
AL537_20445	SM00327	von Willebrand factor (vWF) type A domain
AL537_20465	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AL537_20480	SM00990	AL537_20480
AL537_20525	SM00387	Histidine kinase-like ATPases
AL537_20525	SM00448	cheY-homologous receiver domain
AL537_20610	SM00487	DEAD-like helicases superfamily
AL537_20670	SM00052	Putative diguanylate phosphodiesterase
AL537_20670	SM00448	cheY-homologous receiver domain
AL537_20675	SM00267	diguanylate cyclase
AL537_20685	SM00421	helix_turn_helix, Lux Regulon
AL537_20685	SM00448	cheY-homologous receiver domain
AL537_20690	SM00260	Two component signalling adaptor domain
AL537_20690	SM00448	cheY-homologous receiver domain
AL537_20765	SM00704	CDGSH-type zinc finger. Function unknown.
AL537_20780	SM00953	AL537_20780
AL537_20825	SM00924	MgtE intracellular N domain
AL537_20865	SM00422	helix_turn_helix, mercury resistance
AL537_20895	SM00382	ATPases associated with a variety of cellular activities
AL537_20900	SM00479	AL537_20900
AL537_20920	SM00342	helix_turn_helix, arabinose operon control protein
AL537_20940	SM00849	Metallo-beta-lactamase superfamily
AL537_20970	SM00530	Helix-turn-helix XRE-family like proteins 
AL537_21020	SM00354	helix_turn _helix lactose operon repressor
AL537_21035	SM00052	Putative diguanylate phosphodiesterase
AL537_21045	SM00062	Bacterial periplasmic substrate-binding proteins
AL537_21045	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AL537_21055	SM00382	ATPases associated with a variety of cellular activities
AL537_21070	SM00342	helix_turn_helix, arabinose operon control protein
AL537_21080	SM00495	Chitin-binding domain type 3
AL537_21080	SM00636	AL537_21080
AL537_21120	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_21135	SM00487	DEAD-like helicases superfamily
AL537_21135	SM00490	helicase superfamily c-terminal domain
AL537_21140	SM00052	Putative diguanylate phosphodiesterase
AL537_21160	SM00867	YceI-like domain 
AL537_21165	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL537_21205	SM00782	PhnA Zinc-Ribbon
AL537_21270	SM00271	DnaJ molecular chaperone homology domain
AL537_21280	SM00052	Putative diguanylate phosphodiesterase
AL537_21280	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL537_21280	SM00267	diguanylate cyclase
AL537_21295	SM00382	ATPases associated with a variety of cellular activities
AL537_21310	SM00797	Allophanate hydrolase subunit 2
AL537_21315	SM00796	Allophanate hydrolase subunit 1
AL537_21325	SM00091	PAS domain
AL537_21325	SM00267	diguanylate cyclase
AL537_21325	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_21350	SM00881	CoA binding domain
AL537_21415	SM00530	Helix-turn-helix XRE-family like proteins 
AL537_21460	SM00530	Helix-turn-helix XRE-family like proteins 
AL537_21610	SM00448	cheY-homologous receiver domain
AL537_21610	SM00862	Transcriptional regulatory protein, C terminal
AL537_21615	SM00387	Histidine kinase-like ATPases
AL537_21615	SM00388	His Kinase A (phosphoacceptor) domain
AL537_21625	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AL537_21625	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AL537_21640	SM00267	diguanylate cyclase
AL537_21650	SM00267	diguanylate cyclase
AL537_21650	SM00448	cheY-homologous receiver domain
AL537_21660	SM00382	ATPases associated with a variety of cellular activities
AL537_21700	SM00342	helix_turn_helix, arabinose operon control protein
AL537_21745	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL537_21755	SM00450	Rhodanese Homology Domain
AL537_21800	SM00421	helix_turn_helix, Lux Regulon
AL537_21800	SM00448	cheY-homologous receiver domain
AL537_21805	SM00387	Histidine kinase-like ATPases
AL537_21925	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL537_21925	SM00267	diguanylate cyclase
AL537_21960	SM00880	AL537_21960
AL537_21975	SM00642	Alpha-amylase domain
AL537_22195	SM00482	DNA polymerase A domain
AL537_22200	SM00493	AL537_22200
AL537_22200	SM00778	Zinc-binding domain of primase-helicase
AL537_22220	SM01311	AL537_22220
AL537_22230	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_22230	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_22235	SM01005	Alanine racemase, C-terminal domain
AL537_22275	SM00382	ATPases associated with a variety of cellular activities
AL537_22345	SM00382	ATPases associated with a variety of cellular activities
AL537_22345	SM01086	C-terminal, D2-small domain, of ClpB protein
AL537_22390	SM00331	Sigma factor PP2C-like phosphatases
AL537_22390	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
AL537_22420	SM00240	Forkhead associated domain
AL537_22425	SM00220	Serine/Threonine protein kinases, catalytic domain
AL537_22445	SM00331	Sigma factor PP2C-like phosphatases
AL537_22445	SM00448	cheY-homologous receiver domain
AL537_22480	SM00382	ATPases associated with a variety of cellular activities
AL537_22500	SM01012	AL537_22500
AL537_22520	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AL537_22540	SM00028	Tetratricopeptide repeats
AL537_22540	SM00267	diguanylate cyclase
AL537_22560	SM00871	Bacterial transcription activator, effector binding domain
AL537_22565	SM00388	His Kinase A (phosphoacceptor) domain
AL537_22570	SM00448	cheY-homologous receiver domain
AL537_22570	SM00862	Transcriptional regulatory protein, C terminal
AL537_22615	SM00861	Transketolase, pyrimidine binding domain
AL537_22625	SM00893	Electron transfer flavoprotein domain
AL537_22635	SM00112	Cadherin repeats.
AL537_22635	SM00327	von Willebrand factor (vWF) type A domain
AL537_22675	SM00062	Bacterial periplasmic substrate-binding proteins
AL537_22675	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AL537_22680	SM00382	ATPases associated with a variety of cellular activities
AL537_22770	SM00822	AL537_22770
AL537_22805	SM00422	helix_turn_helix, mercury resistance
AL537_22855	SM00342	helix_turn_helix, arabinose operon control protein
AL537_22880	SM00382	ATPases associated with a variety of cellular activities
AL537_22890	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL537_22890	SM00091	PAS domain
AL537_22890	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_22905	SM00052	Putative diguanylate phosphodiesterase
AL537_22905	SM00267	diguanylate cyclase
AL537_22910	SM00487	DEAD-like helicases superfamily
AL537_22910	SM00490	helicase superfamily c-terminal domain
AL537_22915	SM00357	Cold shock protein domain
AL537_22915	SM00955	AL537_22915
AL537_22920	SM00342	helix_turn_helix, arabinose operon control protein
AL537_22945	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_22950	SM00382	ATPases associated with a variety of cellular activities
AL537_22955	SM00052	Putative diguanylate phosphodiesterase
AL537_22960	SM00346	helix_turn_helix isocitrate lyase regulation
AL537_22975	SM00487	DEAD-like helicases superfamily
AL537_22975	SM00490	helicase superfamily c-terminal domain
AL537_22980	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AL537_23000	SM00357	Cold shock protein domain
AL537_23005	SM00316	Ribosomal protein S1-like RNA-binding domain
AL537_23005	SM00357	Cold shock protein domain
AL537_23005	SM00955	AL537_23005
AL537_23025	SM00487	DEAD-like helicases superfamily
AL537_23025	SM00490	helicase superfamily c-terminal domain
AL537_23030	SM00342	helix_turn_helix, arabinose operon control protein
AL537_23060	SM00357	Cold shock protein domain
AL537_23075	SM00244	prohibitin homologues
AL537_23080	SM00244	prohibitin homologues
AL537_23100	SM00822	AL537_23100
AL537_23155	SM01004	Delta-aminolevulinic acid dehydratase
AL537_23165	SM00421	helix_turn_helix, Lux Regulon
AL537_23285	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_23285	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_23295	SM00382	ATPases associated with a variety of cellular activities
AL537_23315	SM00062	Bacterial periplasmic substrate-binding proteins
AL537_23315	SM00267	diguanylate cyclase
AL537_23325	SM00357	Cold shock protein domain
AL537_23330	SM01322	AL537_23330
AL537_23420	SM00342	helix_turn_helix, arabinose operon control protein
AL537_23485	SM00052	Putative diguanylate phosphodiesterase
AL537_23485	SM00267	diguanylate cyclase
AL537_23520	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_23520	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_23540	SM00530	Helix-turn-helix XRE-family like proteins 
AL537_23545	SM00481	DNA polymerase alpha chain like domain
AL537_23580	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL537_23590	SM00342	helix_turn_helix, arabinose operon control protein
AL537_23615	SM00382	ATPases associated with a variety of cellular activities
AL537_23635	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AL537_23680	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL537_23680	SM00267	diguanylate cyclase
AL537_23725	SM00382	ATPases associated with a variety of cellular activities
AL537_23750	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL537_23755	SM00642	Alpha-amylase domain
AL537_23760	SM00422	helix_turn_helix, mercury resistance
AL537_23800	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_23800	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_23835	SM01007	Class II Aldolase and Adducin N-terminal domain
AL537_23850	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL537_23850	SM01134	AL537_23850
AL537_23865	SM00260	Two component signalling adaptor domain
AL537_23865	SM00448	cheY-homologous receiver domain
AL537_23885	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL537_23915	SM00382	ATPases associated with a variety of cellular activities
AL537_23995	SM00342	helix_turn_helix, arabinose operon control protein
AL537_24035	SM00382	ATPases associated with a variety of cellular activities
AL537_24075	SM00635	Bacterial Ig-like domain 2
AL537_24105	SM00988	UreE urease accessory protein, N-terminal domain
AL537_24145	SM00382	ATPases associated with a variety of cellular activities
AL537_24150	SM00382	ATPases associated with a variety of cellular activities
AL537_24155	SM00342	helix_turn_helix, arabinose operon control protein
AL537_24185	SM00528	Domain in histone-like proteins of HNS family
AL537_24190	SM01276	AL537_24190
AL537_24215	SM00862	Transcriptional regulatory protein, C terminal
AL537_24245	SM00382	ATPases associated with a variety of cellular activities
AL537_24275	SM00862	Transcriptional regulatory protein, C terminal
AL537_24395	SM00246	Wiskott Aldrich syndrome homology region 2
AL537_24445	SM00849	Metallo-beta-lactamase superfamily
AL537_24525	SM00530	Helix-turn-helix XRE-family like proteins 
AL537_24535	SM00487	DEAD-like helicases superfamily
AL537_24585	SM00382	ATPases associated with a variety of cellular activities
AL537_24645	SM01022	AL537_24645
AL537_24655	SM00829	Enoylreductase
AL537_24665	SM01060	AL537_24665
AL537_24690	SM00342	helix_turn_helix, arabinose operon control protein
AL537_24715	SM00849	Metallo-beta-lactamase superfamily
AL537_24720	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL537_24720	SM00382	ATPases associated with a variety of cellular activities
AL537_24735	SM00052	Putative diguanylate phosphodiesterase
AL537_24785	SM00448	cheY-homologous receiver domain
AL537_24785	SM00862	Transcriptional regulatory protein, C terminal
AL537_24790	SM00387	Histidine kinase-like ATPases
AL537_24790	SM00388	His Kinase A (phosphoacceptor) domain
AL537_24795	SM00382	ATPases associated with a variety of cellular activities
AL537_24805	SM00382	ATPases associated with a variety of cellular activities
AL537_24830	SM00382	ATPases associated with a variety of cellular activities
AL537_24840	SM00421	helix_turn_helix, Lux Regulon
AL537_24845	SM00421	helix_turn_helix, Lux Regulon
AL537_24855	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_24855	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_24880	SM00327	von Willebrand factor (vWF) type A domain
AL537_24885	SM00028	Tetratricopeptide repeats
AL537_24885	SM00327	von Willebrand factor (vWF) type A domain
AL537_24895	SM00267	diguanylate cyclase
AL537_24900	SM00382	ATPases associated with a variety of cellular activities
AL537_24920	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_24920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_24950	SM00487	DEAD-like helicases superfamily
AL537_24950	SM00490	helicase superfamily c-terminal domain
AL537_24960	SM00257	Lysin motif
AL537_24970	SM00422	helix_turn_helix, mercury resistance
AL537_24990	SM00028	Tetratricopeptide repeats
AL537_24995	SM00267	diguanylate cyclase
AL537_25015	SM00382	ATPases associated with a variety of cellular activities
AL537_25050	SM00587	ZnF_C4 abd HLH domain containing kinases domain
AL537_25070	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_25070	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_25085	SM00382	ATPases associated with a variety of cellular activities
AL537_25120	SM01057	Eukaryotic-type carbonic anhydrase
AL537_25125	SM00972	Spore Coat Protein U domain
AL537_25140	SM00972	Spore Coat Protein U domain
AL537_25145	SM00972	Spore Coat Protein U domain
AL537_25150	SM00829	Enoylreductase
AL537_25160	SM00052	Putative diguanylate phosphodiesterase
AL537_25160	SM00267	diguanylate cyclase
AL537_25165	SM00062	Bacterial periplasmic substrate-binding proteins
AL537_25180	SM00388	His Kinase A (phosphoacceptor) domain
AL537_25185	SM00448	cheY-homologous receiver domain
AL537_25185	SM00862	Transcriptional regulatory protein, C terminal
AL537_25225	SM00481	DNA polymerase alpha chain like domain
AL537_25245	SM00020	Trypsin-like serine protease
AL537_25255	SM00382	ATPases associated with a variety of cellular activities
AL537_25280	SM00382	ATPases associated with a variety of cellular activities
AL537_25420	SM00422	helix_turn_helix, mercury resistance
AL537_25555	SM00342	helix_turn_helix, arabinose operon control protein
AL537_25560	SM00642	Alpha-amylase domain
AL537_25565	SM00936	Penicillin-binding protein 5, C-terminal domain 
AL537_25580	SM00450	Rhodanese Homology Domain
AL537_25595	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
AL537_25630	SM00226	Low molecular weight phosphatase family
AL537_25695	SM00642	Alpha-amylase domain
AL537_25705	SM00642	Alpha-amylase domain
AL537_25725	SM00421	helix_turn_helix, Lux Regulon
AL537_25765	SM00966	SpoVT / AbrB like domain 
AL537_25785	SM00671	Sel1-like repeats.
AL537_25790	SM00642	Alpha-amylase domain
AL537_25800	SM00642	Alpha-amylase domain
AL537_25820	SM00642	Alpha-amylase domain
AL537_25825	SM00857	Resolvase, N terminal domain
AL537_25870	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL537_25870	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL537_25875	SM00382	ATPases associated with a variety of cellular activities
