locus-tag class description AL552_00010 PF00171 Aldehyde dehydrogenase family AL552_00025 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL552_00025 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_00035 PF01040 UbiA prenyltransferase family AL552_00045 PF00510 Cytochrome c oxidase subunit III AL552_00050 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL552_00055 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL552_00055 PF06481 COX Aromatic Rich Motif AL552_00065 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL552_00065 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL552_00070 PF00378 Enoyl-CoA hydratase/isomerase AL552_00075 PF00378 Enoyl-CoA hydratase/isomerase AL552_00085 PF00171 Aldehyde dehydrogenase family AL552_00090 PF00108 Thiolase, N-terminal domain AL552_00090 PF02803 Thiolase, C-terminal domain AL552_00095 PF00376 MerR family regulatory protein AL552_00095 PF09278 MerR, DNA binding AL552_00100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL552_00100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL552_00100 PF02770 Acyl-CoA dehydrogenase, middle domain AL552_00105 PF01039 Carboxyl transferase domain AL552_00110 PF00378 Enoyl-CoA hydratase/isomerase AL552_00115 PF00682 HMGL-like AL552_00120 PF10063 Uncharacterized integral membrane protein (DUF2301) AL552_00130 PF01565 FAD binding domain AL552_00130 PF02913 FAD linked oxidases, C-terminal domain AL552_00130 PF13183 4Fe-4S dicluster domain AL552_00135 PF04909 Amidohydrolase AL552_00140 PF00561 alpha/beta hydrolase fold AL552_00145 PF01965 DJ-1/PfpI family AL552_00145 PF12833 Helix-turn-helix domain AL552_00160 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL552_00165 PF00528 Binding-protein-dependent transport system inner membrane component AL552_00170 PF00005 ABC transporter AL552_00170 PF00571 CBS domain AL552_00180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_00180 PF08447 PAS fold AL552_00180 PF13426 PAS domain AL552_00185 PF00871 Acetokinase family AL552_00195 PF00563 EAL domain AL552_00195 PF00990 Diguanylate cyclase, GGDEF domain AL552_00195 PF03707 Bacterial signalling protein N terminal repeat AL552_00200 PF00271 Helicase conserved C-terminal domain AL552_00200 PF03880 DbpA RNA binding domain AL552_00200 PF00270 DEAD/DEAH box helicase AL552_00205 PF00575 S1 RNA binding domain AL552_00205 PF08206 Ribonuclease B OB domain AL552_00205 PF00773 RNB domain AL552_00210 PF12833 Helix-turn-helix domain AL552_00220 PF12849 PBP superfamily domain AL552_00245 PF00589 Phage integrase family AL552_00245 PF12167 Arm DNA-binding domain AL552_00285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_00285 PF08447 PAS fold AL552_00290 PF00005 ABC transporter AL552_00295 PF12792 CSS motif domain associated with EAL AL552_00295 PF00563 EAL domain AL552_00315 PF00271 Helicase conserved C-terminal domain AL552_00315 PF00270 DEAD/DEAH box helicase AL552_00320 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL552_00320 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL552_00330 PF01470 Pyroglutamyl peptidase AL552_00340 PF00313 'Cold-shock' DNA-binding domain AL552_00345 PF00575 S1 RNA binding domain AL552_00345 PF08461 Ribonuclease R winged-helix domain AL552_00345 PF00773 RNB domain AL552_00345 PF08206 Ribonuclease B OB domain AL552_00345 PF17876 Cold shock domain AL552_00350 PF00291 Pyridoxal-phosphate dependent enzyme AL552_00360 PF09905 DNA-binding protein VF530 AL552_00365 PF00270 DEAD/DEAH box helicase AL552_00365 PF00271 Helicase conserved C-terminal domain AL552_00375 PF01925 Sulfite exporter TauE/SafE AL552_00405 PF08240 Alcohol dehydrogenase GroES-like domain AL552_00405 PF00107 Zinc-binding dehydrogenase AL552_00425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_00425 PF03466 LysR substrate binding domain AL552_00445 PF12833 Helix-turn-helix domain AL552_00445 PF12852 Cupin AL552_00450 PF12706 Beta-lactamase superfamily domain AL552_00460 PF00005 ABC transporter AL552_00465 PF01032 FecCD transport family AL552_00515 PF04151 Bacterial pre-peptidase C-terminal domain AL552_00515 PF00082 Subtilase family AL552_00515 PF05922 Peptidase inhibitor I9 AL552_00535 PF12843 Putative quorum-sensing-regulated virulence factor AL552_00555 PF01329 Pterin 4 alpha carbinolamine dehydratase AL552_00560 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL552_00565 PF00501 AMP-binding enzyme AL552_00565 PF13193 AMP-binding enzyme C-terminal domain AL552_00575 PF03466 LysR substrate binding domain AL552_00575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_00585 PF00892 EamA-like transporter family AL552_00595 PF00465 Iron-containing alcohol dehydrogenase AL552_00600 PF07995 Glucose / Sorbosone dehydrogenase AL552_00610 PF00210 Ferritin-like domain AL552_00615 PF08447 PAS fold AL552_00615 PF13426 PAS domain AL552_00615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_00625 PF00005 ABC transporter AL552_00625 PF02687 FtsX-like permease family AL552_00625 PF12704 MacB-like periplasmic core domain AL552_00645 PF00990 Diguanylate cyclase, GGDEF domain AL552_00650 PF03889 Alternative ribosome-rescue factor A AL552_00655 PF00313 'Cold-shock' DNA-binding domain AL552_00675 PF13488 Glycine zipper AL552_00675 PF00691 OmpA family AL552_00685 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL552_00685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL552_00690 PF01040 UbiA prenyltransferase family AL552_00695 PF02628 Cytochrome oxidase assembly protein AL552_00715 PF00510 Cytochrome c oxidase subunit III AL552_00720 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AL552_00725 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL552_00730 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL552_00730 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AL552_00735 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL552_00735 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL552_00735 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL552_00735 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL552_00745 PF01810 LysE type translocator AL552_00750 PF12833 Helix-turn-helix domain AL552_00765 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL552_00780 PF00892 EamA-like transporter family AL552_00785 PF00462 Glutaredoxin AL552_00800 PF07690 Major Facilitator Superfamily AL552_00805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_00805 PF03466 LysR substrate binding domain AL552_00810 PF00563 EAL domain AL552_00810 PF00990 Diguanylate cyclase, GGDEF domain AL552_00810 PF08448 PAS fold AL552_00810 PF08447 PAS fold AL552_00815 PF01551 Peptidase family M23 AL552_00815 PF08525 Opacity-associated protein A N-terminal motif AL552_00815 PF01476 LysM domain AL552_00850 PF02743 Cache domain AL552_00850 PF00672 HAMP domain AL552_00850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_00860 PF03222 Tryptophan/tyrosine permease family AL552_00895 PF00107 Zinc-binding dehydrogenase AL552_00895 PF08240 Alcohol dehydrogenase GroES-like domain AL552_00900 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL552_00900 PF02378 Phosphotransferase system, EIIC AL552_00905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL552_00925 PF01758 Sodium Bile acid symporter family AL552_00935 PF01161 Phosphatidylethanolamine-binding protein AL552_00940 PF02567 Phenazine biosynthesis-like protein AL552_00945 PF10282 Lactonase, 7-bladed beta-propeller AL552_00955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_00955 PF00672 HAMP domain AL552_00965 PF00005 ABC transporter AL552_00985 PF01568 Molydopterin dinucleotide binding domain AL552_00985 PF00384 Molybdopterin oxidoreductase AL552_00985 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL552_00985 PF12838 4Fe-4S dicluster domain AL552_00985 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL552_01010 PF00873 AcrB/AcrD/AcrF family AL552_01030 PF00990 Diguanylate cyclase, GGDEF domain AL552_01030 PF17151 Periplasmic sensor domain AL552_01040 PF13302 Acetyltransferase (GNAT) domain AL552_01050 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL552_01055 PF00873 AcrB/AcrD/AcrF family AL552_01060 PF13533 Biotin-lipoyl like AL552_01070 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL552_01070 PF00326 Prolyl oligopeptidase family AL552_01075 PF00005 ABC transporter AL552_01075 PF16326 ABC transporter C-terminal domain AL552_01075 PF12848 ABC transporter AL552_01080 PF00582 Universal stress protein family AL552_01085 PF02525 Flavodoxin-like fold AL552_01090 PF00999 Sodium/hydrogen exchanger family AL552_01090 PF02254 TrkA-N domain AL552_01105 PF00128 Alpha amylase, catalytic domain AL552_01110 PF13411 MerR HTH family regulatory protein AL552_01115 PF02627 Carboxymuconolactone decarboxylase family AL552_01125 PF04151 Bacterial pre-peptidase C-terminal domain AL552_01125 PF08453 Peptidase family M9 N-terminal AL552_01125 PF01752 Collagenase AL552_01140 PF03466 LysR substrate binding domain AL552_01140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_01145 PF00672 HAMP domain AL552_01145 PF02743 Cache domain AL552_01145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_01155 PF03824 High-affinity nickel-transport protein AL552_01160 PF02583 Metal-sensitive transcriptional repressor AL552_01180 PF00072 Response regulator receiver domain AL552_01180 PF01584 CheW-like domain AL552_01190 PF01243 Pyridoxamine 5'-phosphate oxidase AL552_01195 PF06228 Haem utilisation ChuX/HutX AL552_01205 PF03544 Gram-negative bacterial TonB protein C-terminal AL552_01210 PF01618 MotA/TolQ/ExbB proton channel family AL552_01215 PF02472 Biopolymer transport protein ExbD/TolR AL552_01225 PF01032 FecCD transport family AL552_01230 PF00005 ABC transporter AL552_01275 PF01467 Cytidylyltransferase-like AL552_01280 PF02540 NAD synthase AL552_01290 PF01679 Proteolipid membrane potential modulator AL552_01300 PF01979 Amidohydrolase family AL552_01305 PF05661 Protein of unknown function (DUF808) AL552_01335 PF00528 Binding-protein-dependent transport system inner membrane component AL552_01340 PF14785 Maltose transport system permease protein MalF P2 domain AL552_01340 PF00528 Binding-protein-dependent transport system inner membrane component AL552_01345 PF01547 Bacterial extracellular solute-binding protein AL552_01350 PF08402 TOBE domain AL552_01350 PF00005 ABC transporter AL552_01370 PF02706 Chain length determinant protein AL552_01370 PF13807 G-rich domain on putative tyrosine kinase AL552_01370 PF13614 AAA domain AL552_01380 PF13439 Glycosyltransferase Family 4 AL552_01380 PF00534 Glycosyl transferases group 1 AL552_01415 PF00440 Bacterial regulatory proteins, tetR family AL552_01415 PF16925 Tetracyclin repressor-like, C-terminal domain AL552_01420 PF00107 Zinc-binding dehydrogenase AL552_01420 PF16884 N-terminal domain of oxidoreductase AL552_01425 PF13417 Glutathione S-transferase, N-terminal domain AL552_01430 PF06628 Catalase-related immune-responsive AL552_01430 PF00199 Catalase AL552_01435 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL552_01435 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL552_01445 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL552_01455 PF12833 Helix-turn-helix domain AL552_01460 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL552_01460 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL552_01465 PF01238 Phosphomannose isomerase type I AL552_01475 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_01475 PF18113 Rubredoxin binding C-terminal domain AL552_01480 PF00753 Metallo-beta-lactamase superfamily AL552_01480 PF00301 Rubredoxin AL552_01480 PF00258 Flavodoxin AL552_01490 PF13419 Haloacid dehalogenase-like hydrolase AL552_01495 PF00127 Copper binding proteins, plastocyanin/azurin family AL552_01500 PF02378 Phosphotransferase system, EIIC AL552_01510 PF01266 FAD dependent oxidoreductase AL552_01515 PF18113 Rubredoxin binding C-terminal domain AL552_01515 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_01525 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AL552_01525 PF00355 Rieske [2Fe-2S] domain AL552_01530 PF02028 BCCT, betaine/carnitine/choline family transporter AL552_01535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_01535 PF03466 LysR substrate binding domain AL552_01540 PF00703 Glycosyl hydrolases family 2 AL552_01540 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL552_01540 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AL552_01540 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL552_01545 PF02028 BCCT, betaine/carnitine/choline family transporter AL552_01550 PF07702 UTRA domain AL552_01550 PF00392 Bacterial regulatory proteins, gntR family AL552_01575 PF08402 TOBE domain AL552_01575 PF00005 ABC transporter AL552_01600 PF00873 AcrB/AcrD/AcrF family AL552_01605 PF00529 HlyD membrane-fusion protein of T1SS AL552_01605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL552_01610 PF13091 PLD-like domain AL552_01635 PF09278 MerR, DNA binding AL552_01635 PF00376 MerR family regulatory protein AL552_01650 PF03466 LysR substrate binding domain AL552_01650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_01660 PF13378 Enolase C-terminal domain-like AL552_01660 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AL552_01670 PF03764 Elongation factor G, domain IV AL552_01670 PF00009 Elongation factor Tu GTP binding domain AL552_01670 PF03144 Elongation factor Tu domain 2 AL552_01670 PF00679 Elongation factor G C-terminus AL552_01670 PF14492 Elongation Factor G, domain II AL552_01695 PF02001 Protein of unknown function DUF134 AL552_01705 PF00528 Binding-protein-dependent transport system inner membrane component AL552_01710 PF00005 ABC transporter AL552_01710 PF00571 CBS domain AL552_01715 PF17185 NlpE C-terminal OB domain AL552_01715 PF04170 NlpE N-terminal domain AL552_01720 PF06629 MltA-interacting protein MipA AL552_01735 PF03466 LysR substrate binding domain AL552_01735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_01760 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL552_01760 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL552_01770 PF00857 Isochorismatase family AL552_01780 PF08220 DeoR-like helix-turn-helix domain AL552_01780 PF00455 DeoR C terminal sensor domain AL552_01785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL552_01790 PF01641 SelR domain AL552_01790 PF01625 Peptide methionine sulfoxide reductase AL552_01805 PF03060 Nitronate monooxygenase AL552_01810 PF13520 Amino acid permease AL552_01820 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AL552_01825 PF12833 Helix-turn-helix domain AL552_01830 PF08359 YsiA-like protein, C-terminal region AL552_01830 PF00440 Bacterial regulatory proteins, tetR family AL552_01845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_01845 PF03466 LysR substrate binding domain AL552_01850 PF01810 LysE type translocator AL552_01865 PF00118 TCP-1/cpn60 chaperonin family AL552_01870 PF00166 Chaperonin 10 Kd subunit AL552_01875 PF00581 Rhodanese-like domain AL552_01890 PF01070 FMN-dependent dehydrogenase AL552_01910 PF00669 Bacterial flagellin N-terminal helical region AL552_01920 PF10135 Rod binding protein AL552_01920 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL552_01925 PF02119 Flagellar P-ring protein AL552_01930 PF02107 Flagellar L-ring protein AL552_01935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL552_01935 PF00460 Flagella basal body rod protein AL552_01940 PF00460 Flagella basal body rod protein AL552_01940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL552_01945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL552_01945 PF07559 Flagellar basal body protein FlaE AL552_01945 PF00460 Flagella basal body rod protein AL552_01950 PF13861 FlgD Tudor-like domain AL552_01950 PF13860 FlgD Ig-like domain AL552_01950 PF03963 Flagellar hook capping protein - N-terminal region AL552_01955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL552_01955 PF00460 Flagella basal body rod protein AL552_01960 PF00460 Flagella basal body rod protein AL552_01980 PF01464 Transglycosylase SLT domain AL552_01985 PF00133 tRNA synthetases class I (I, L, M and V) AL552_01985 PF08264 Anticodon-binding domain of tRNA AL552_02005 PF03313 Serine dehydratase alpha chain AL552_02005 PF03315 Serine dehydratase beta chain AL552_02010 PF00854 POT family AL552_02020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_02020 PF03466 LysR substrate binding domain AL552_02030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_02030 PF03466 LysR substrate binding domain AL552_02035 PF00691 OmpA family AL552_02035 PF01389 OmpA-like transmembrane domain AL552_02040 PF18027 Cytosolic carboxypeptidase N-terminal domain AL552_02040 PF00246 Zinc carboxypeptidase AL552_02045 PF01266 FAD dependent oxidoreductase AL552_02055 PF04393 Protein of unknown function (DUF535) AL552_02070 PF00392 Bacterial regulatory proteins, gntR family AL552_02070 PF07702 UTRA domain AL552_02075 PF00528 Binding-protein-dependent transport system inner membrane component AL552_02080 PF00005 ABC transporter AL552_02090 PF00266 Aminotransferase class-V AL552_02100 PF13419 Haloacid dehalogenase-like hydrolase AL552_02105 PF00356 Bacterial regulatory proteins, lacI family AL552_02110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL552_02120 PF03611 PTS system sugar-specific permease component AL552_02135 PF00657 GDSL-like Lipase/Acylhydrolase AL552_02140 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL552_02145 PF00194 Eukaryotic-type carbonic anhydrase AL552_02150 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL552_02165 PF13419 Haloacid dehalogenase-like hydrolase AL552_02170 PF03466 LysR substrate binding domain AL552_02170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_02205 PF12464 Maltose acetyltransferase AL552_02205 PF14602 Hexapeptide repeat of succinyl-transferase AL552_02210 PF02566 OsmC-like protein AL552_02215 PF01625 Peptide methionine sulfoxide reductase AL552_02215 PF01641 SelR domain AL552_02230 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AL552_02235 PF03441 FAD binding domain of DNA photolyase AL552_02235 PF00875 DNA photolyase AL552_02240 PF00990 Diguanylate cyclase, GGDEF domain AL552_02255 PF00990 Diguanylate cyclase, GGDEF domain AL552_02255 PF05230 MASE2 domain AL552_02270 PF01773 Na+ dependent nucleoside transporter N-terminus AL552_02270 PF07662 Na+ dependent nucleoside transporter C-terminus AL552_02270 PF07670 Nucleoside recognition AL552_02290 PF01212 Beta-eliminating lyase AL552_02295 PF03116 NQR2, RnfD, RnfE family AL552_02300 PF01654 Cytochrome bd terminal oxidase subunit I AL552_02305 PF02322 Cytochrome bd terminal oxidase subunit II AL552_02320 PF01266 FAD dependent oxidoreductase AL552_02340 PF05525 Branched-chain amino acid transport protein AL552_02345 PF07694 5TMR of 5TMR-LYT AL552_02345 PF00990 Diguanylate cyclase, GGDEF domain AL552_02355 PF00512 His Kinase A (phospho-acceptor) domain AL552_02355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_02365 PF00232 Glycosyl hydrolase family 1 AL552_02390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_02390 PF03466 LysR substrate binding domain AL552_02395 PF08443 RimK-like ATP-grasp domain AL552_02395 PF18030 RimK PreATP-grasp domain AL552_02400 PF18030 RimK PreATP-grasp domain AL552_02400 PF08443 RimK-like ATP-grasp domain AL552_02405 PF00753 Metallo-beta-lactamase superfamily AL552_02410 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL552_02410 PF17810 Arginine decarboxylase helical bundle domain AL552_02410 PF17944 Arginine decarboxylase C-terminal helical extension AL552_02415 PF00491 Arginase family AL552_02420 PF07690 Major Facilitator Superfamily AL552_02425 PF00326 Prolyl oligopeptidase family AL552_02425 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL552_02440 PF00950 ABC 3 transport family AL552_02445 PF00005 ABC transporter AL552_02495 PF02472 Biopolymer transport protein ExbD/TolR AL552_02500 PF01618 MotA/TolQ/ExbB proton channel family AL552_02505 PF01618 MotA/TolQ/ExbB proton channel family AL552_02515 PF00593 TonB dependent receptor AL552_02515 PF07715 TonB-dependent Receptor Plug Domain AL552_02520 PF16750 Sensor domain of 2-component histidine kinase AL552_02520 PF00672 HAMP domain AL552_02520 PF00512 His Kinase A (phospho-acceptor) domain AL552_02520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_02525 PF00486 Transcriptional regulatory protein, C terminal AL552_02525 PF00072 Response regulator receiver domain AL552_02535 PF03009 Glycerophosphoryl diester phosphodiesterase family AL552_02545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL552_02545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL552_02550 PF10928 Protein of unknown function (DUF2810) AL552_02605 PF04013 Putative SAM-dependent RNA methyltransferase AL552_02610 PF01523 Putative modulator of DNA gyrase AL552_02615 PF01523 Putative modulator of DNA gyrase AL552_02620 PF08543 Phosphomethylpyrimidine kinase AL552_02625 PF00005 ABC transporter AL552_02630 PF00528 Binding-protein-dependent transport system inner membrane component AL552_02635 PF09084 NMT1/THI5 like AL552_02640 PF03070 TENA/THI-4/PQQC family AL552_02645 PF02110 Hydroxyethylthiazole kinase family AL552_02650 PF02581 Thiamine monophosphate synthase AL552_02660 PF18364 Molybdopterin oxidoreductase N-terminal domain AL552_02660 PF00384 Molybdopterin oxidoreductase AL552_02660 PF01568 Molydopterin dinucleotide binding domain AL552_02665 PF03264 NapC/NirT cytochrome c family, N-terminal region AL552_02670 PF13302 Acetyltransferase (GNAT) domain AL552_02690 PF00583 Acetyltransferase (GNAT) family AL552_02705 PF00392 Bacterial regulatory proteins, gntR family AL552_02705 PF00155 Aminotransferase class I and II AL552_02710 PF02595 Glycerate kinase family AL552_02715 PF02447 GntP family permease AL552_02720 PF13556 PucR C-terminal helix-turn-helix domain AL552_02720 PF05651 Putative sugar diacid recognition AL552_02720 PF17853 GGDEF-like domain AL552_02745 PF13419 Haloacid dehalogenase-like hydrolase AL552_02760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_02760 PF03466 LysR substrate binding domain AL552_02770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_02770 PF03466 LysR substrate binding domain AL552_02775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL552_02780 PF01661 Macro domain AL552_02785 PF01204 Trehalase AL552_02795 PF12706 Beta-lactamase superfamily domain AL552_02805 PF07690 Major Facilitator Superfamily AL552_02810 PF13533 Biotin-lipoyl like AL552_02815 PF03922 OmpW family AL552_02820 PF13599 Pentapeptide repeats (9 copies) AL552_02835 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL552_02835 PF18416 N-acetylglucosamine binding protein domain 2 AL552_02840 PF01037 Lrp/AsnC ligand binding domain AL552_02845 PF01810 LysE type translocator AL552_02850 PF00326 Prolyl oligopeptidase family AL552_02855 PF04954 Siderophore-interacting protein AL552_02855 PF08021 Siderophore-interacting FAD-binding domain AL552_02860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_02860 PF03466 LysR substrate binding domain AL552_02865 PF00797 N-acetyltransferase AL552_02870 PF00107 Zinc-binding dehydrogenase AL552_02870 PF08240 Alcohol dehydrogenase GroES-like domain AL552_02875 PF00756 Putative esterase AL552_02885 PF17152 Periplasmic sensor domain AL552_02885 PF00990 Diguanylate cyclase, GGDEF domain AL552_02900 PF03466 LysR substrate binding domain AL552_02900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_02915 PF00849 RNA pseudouridylate synthase AL552_02920 PF01554 MatE AL552_02930 PF00563 EAL domain AL552_02930 PF03707 Bacterial signalling protein N terminal repeat AL552_02930 PF00990 Diguanylate cyclase, GGDEF domain AL552_02940 PF06865 Pyrimidine/purine nucleoside phosphorylase AL552_02950 PF08329 Chitinase A, N-terminal domain AL552_02950 PF00704 Glycosyl hydrolases family 18 AL552_02955 PF12697 Alpha/beta hydrolase family AL552_02970 PF03600 Citrate transporter AL552_02980 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL552_02990 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL552_02990 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL552_02995 PF00730 HhH-GPD superfamily base excision DNA repair protein AL552_02995 PF06029 AlkA N-terminal domain AL552_03005 PF07681 DoxX AL552_03010 PF17954 Quercetinase C-terminal cupin domain AL552_03010 PF02678 Pirin AL552_03015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_03015 PF03466 LysR substrate binding domain AL552_03030 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL552_03040 PF03616 Sodium/glutamate symporter AL552_03045 PF00392 Bacterial regulatory proteins, gntR family AL552_03045 PF00155 Aminotransferase class I and II AL552_03060 PF03616 Sodium/glutamate symporter AL552_03080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_03080 PF17200 Single Cache domain 2 AL552_03080 PF00672 HAMP domain AL552_03085 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL552_03095 PF00072 Response regulator receiver domain AL552_03095 PF04397 LytTr DNA-binding domain AL552_03100 PF13492 GAF domain AL552_03100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_03100 PF07694 5TMR of 5TMR-LYT AL552_03100 PF06580 Histidine kinase AL552_03120 PF00005 ABC transporter AL552_03135 PF01098 Cell cycle protein AL552_03140 PF01709 Transcriptional regulator AL552_03150 PF00072 Response regulator receiver domain AL552_03150 PF01627 Hpt domain AL552_03150 PF17149 Periplasmic sensor domain found in signal transduction proteins AL552_03150 PF00672 HAMP domain AL552_03150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_03150 PF00512 His Kinase A (phospho-acceptor) domain AL552_03160 PF08719 Domain of unknown function (DUF1768) AL552_03160 PF00925 GTP cyclohydrolase II AL552_03170 PF00005 ABC transporter AL552_03170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL552_03175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL552_03175 PF00005 ABC transporter AL552_03190 PF18607 ParA helix turn helix domain AL552_03190 PF13614 AAA domain AL552_03195 PF02195 ParB-like nuclease domain AL552_03195 PF08775 ParB family AL552_03200 PF05127 Helicase AL552_03200 PF13718 GNAT acetyltransferase 2 AL552_03215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_03215 PF03466 LysR substrate binding domain AL552_03225 PF00267 Gram-negative porin AL552_03230 PF02378 Phosphotransferase system, EIIC AL552_03230 PF00367 phosphotransferase system, EIIB AL552_03235 PF01380 SIS domain AL552_03245 PF01418 Helix-turn-helix domain, rpiR family AL552_03245 PF01380 SIS domain AL552_03250 PF00246 Zinc carboxypeptidase AL552_03255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL552_03260 PF03358 NADPH-dependent FMN reductase AL552_03275 PF00664 ABC transporter transmembrane region AL552_03275 PF00005 ABC transporter AL552_03275 PF03412 Peptidase C39 family AL552_03290 PF00529 HlyD membrane-fusion protein of T1SS AL552_03295 PF00158 Sigma-54 interaction domain AL552_03295 PF00072 Response regulator receiver domain AL552_03295 PF02954 Bacterial regulatory protein, Fis family AL552_03300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_03300 PF02743 Cache domain AL552_03300 PF00512 His Kinase A (phospho-acceptor) domain AL552_03305 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL552_03305 PF01243 Pyridoxamine 5'-phosphate oxidase AL552_03315 PF12833 Helix-turn-helix domain AL552_03320 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL552_03320 PF01619 Proline dehydrogenase AL552_03320 PF00171 Aldehyde dehydrogenase family AL552_03320 PF14850 DNA-binding domain of Proline dehydrogenase AL552_03330 PF00474 Sodium:solute symporter family AL552_03345 PF13302 Acetyltransferase (GNAT) domain AL552_03355 PF01037 Lrp/AsnC ligand binding domain AL552_03365 PF00005 ABC transporter AL552_03365 PF00664 ABC transporter transmembrane region AL552_03375 PF06719 AraC-type transcriptional regulator N-terminus AL552_03375 PF12833 Helix-turn-helix domain AL552_03400 PF03473 MOSC domain AL552_03400 PF03475 3-alpha domain AL552_03420 PF04542 Sigma-70 region 2 AL552_03420 PF08281 Sigma-70, region 4 AL552_03425 PF01965 DJ-1/PfpI family AL552_03425 PF12833 Helix-turn-helix domain AL552_03435 PF03466 LysR substrate binding domain AL552_03435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_03455 PF13192 Thioredoxin domain AL552_03455 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_03460 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL552_03460 PF00578 AhpC/TSA family AL552_03465 PF01047 MarR family AL552_03470 PF02566 OsmC-like protein AL552_03490 PF00005 ABC transporter AL552_03510 PF00535 Glycosyl transferase family 2 AL552_03535 PF00367 phosphotransferase system, EIIB AL552_03535 PF02378 Phosphotransferase system, EIIC AL552_03545 PF00072 Response regulator receiver domain AL552_03545 PF00486 Transcriptional regulatory protein, C terminal AL552_03550 PF08521 Two-component sensor kinase N-terminal AL552_03550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_03550 PF00512 His Kinase A (phospho-acceptor) domain AL552_03555 PF01547 Bacterial extracellular solute-binding protein AL552_03560 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL552_03560 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL552_03565 PF06276 Ferric iron reductase FhuF-like transporter AL552_03565 PF04183 IucA / IucC family AL552_03575 PF06276 Ferric iron reductase FhuF-like transporter AL552_03575 PF04183 IucA / IucC family AL552_03580 PF00206 Lyase AL552_03580 PF02655 ATP-grasp domain AL552_03585 PF00593 TonB dependent receptor AL552_03585 PF07715 TonB-dependent Receptor Plug Domain AL552_03590 PF00593 TonB dependent receptor AL552_03590 PF07660 Secretin and TonB N terminus short domain AL552_03590 PF07715 TonB-dependent Receptor Plug Domain AL552_03595 PF01497 Periplasmic binding protein AL552_03600 PF01032 FecCD transport family AL552_03605 PF01032 FecCD transport family AL552_03610 PF00005 ABC transporter AL552_03620 PF05193 Peptidase M16 inactive domain AL552_03620 PF00675 Insulinase (Peptidase family M16) AL552_03630 PF01551 Peptidase family M23 AL552_03630 PF04225 Opacity-associated protein A LysM-like domain AL552_03655 PF07690 Major Facilitator Superfamily AL552_03665 PF00356 Bacterial regulatory proteins, lacI family AL552_03680 PF07690 Major Facilitator Superfamily AL552_03685 PF00474 Sodium:solute symporter family AL552_03690 PF03315 Serine dehydratase beta chain AL552_03690 PF03313 Serine dehydratase alpha chain AL552_03700 PF02264 LamB porin AL552_03715 PF00128 Alpha amylase, catalytic domain AL552_03715 PF02903 Alpha amylase, N-terminal ig-like domain AL552_03715 PF16657 Maltogenic Amylase, C-terminal domain AL552_03720 PF04231 Endonuclease I AL552_03725 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL552_03725 PF11852 Domain of unknown function (DUF3372) AL552_03725 PF17967 Pullulanase N2 domain AL552_03725 PF18494 Pullulanase Ins domain AL552_03725 PF03714 Bacterial pullanase-associated domain AL552_03740 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL552_03740 PF01276 Orn/Lys/Arg decarboxylase, major domain AL552_03740 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL552_03745 PF13520 Amino acid permease AL552_03755 PF08543 Phosphomethylpyrimidine kinase AL552_03760 PF00375 Sodium:dicarboxylate symporter family AL552_03765 PF03193 RsgA GTPase AL552_03770 PF00367 phosphotransferase system, EIIB AL552_03770 PF02378 Phosphotransferase system, EIIC AL552_03775 PF02630 SCO1/SenC AL552_03790 PF00196 Bacterial regulatory proteins, luxR family AL552_03790 PF17874 MalT-like TPR region AL552_03800 PF00343 Carbohydrate phosphorylase AL552_03805 PF02446 4-alpha-glucanotransferase AL552_03810 PF02806 Alpha amylase, C-terminal all-beta domain AL552_03810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL552_03810 PF00128 Alpha amylase, catalytic domain AL552_03815 PF00912 Transglycosylase AL552_03820 PF00128 Alpha amylase, catalytic domain AL552_03835 PF07670 Nucleoside recognition AL552_03840 PF07670 Nucleoside recognition AL552_03845 PF07687 Peptidase dimerisation domain AL552_03845 PF01546 Peptidase family M20/M25/M40 AL552_03850 PF06803 Protein of unknown function (DUF1232) AL552_03855 PF00375 Sodium:dicarboxylate symporter family AL552_03865 PF13807 G-rich domain on putative tyrosine kinase AL552_03865 PF13614 AAA domain AL552_03865 PF02706 Chain length determinant protein AL552_03870 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL552_03875 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL552_03875 PF02563 Polysaccharide biosynthesis/export protein AL552_03875 PF10531 SLBB domain AL552_03885 PF00881 Nitroreductase family AL552_03890 PF01914 MarC family integral membrane protein AL552_03895 PF01734 Patatin-like phospholipase AL552_03900 PF18416 N-acetylglucosamine binding protein domain 2 AL552_03900 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL552_03905 PF02469 Fasciclin domain AL552_03910 PF00875 DNA photolyase AL552_03910 PF03441 FAD binding domain of DNA photolyase AL552_03930 PF00561 alpha/beta hydrolase fold AL552_03935 PF00768 D-alanyl-D-alanine carboxypeptidase AL552_03935 PF07943 Penicillin-binding protein 5, C-terminal domain AL552_03940 PF00686 Starch binding domain AL552_03940 PF00128 Alpha amylase, catalytic domain AL552_03945 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AL552_03945 PF12833 Helix-turn-helix domain AL552_03950 PF00881 Nitroreductase family AL552_03960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_03960 PF03466 LysR substrate binding domain AL552_03965 PF09905 DNA-binding protein VF530 AL552_03975 PF00970 Oxidoreductase FAD-binding domain AL552_03975 PF00175 Oxidoreductase NAD-binding domain AL552_03980 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL552_03985 PF01594 AI-2E family transporter AL552_03995 PF13533 Biotin-lipoyl like AL552_04020 PF00892 EamA-like transporter family AL552_04025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_04025 PF03466 LysR substrate binding domain AL552_04030 PF07690 Major Facilitator Superfamily AL552_04040 PF00583 Acetyltransferase (GNAT) family AL552_04050 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL552_04055 PF04055 Radical SAM superfamily AL552_04100 PF08000 Bacterial PH domain AL552_04115 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL552_04115 PF00691 OmpA family AL552_04120 PF01618 MotA/TolQ/ExbB proton channel family AL552_04125 PF04542 Sigma-70 region 2 AL552_04125 PF04545 Sigma-70, region 4 AL552_04130 PF03748 Flagellar basal body-associated protein FliL AL552_04145 PF02561 Flagellar protein FliS AL552_04150 PF07196 Flagellin hook IN motif AL552_04150 PF07195 Flagellar hook-associated protein 2 C-terminus AL552_04150 PF02465 Flagellar hook-associated protein 2 N-terminus AL552_04160 PF00669 Bacterial flagellin N-terminal helical region AL552_04160 PF00700 Bacterial flagellin C-terminal helical region AL552_04170 PF00771 FHIPEP family AL552_04175 PF01312 FlhB HrpN YscU SpaS Family AL552_04180 PF01311 Bacterial export proteins, family 1 AL552_04185 PF01313 Bacterial export proteins, family 3 AL552_04190 PF00813 FliP family AL552_04195 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL552_04210 PF00158 Sigma-54 interaction domain AL552_04210 PF00072 Response regulator receiver domain AL552_04210 PF02954 Bacterial regulatory protein, Fis family AL552_04215 PF02049 Flagellar hook-basal body complex protein FliE AL552_04220 PF01514 Secretory protein of YscJ/FliF family AL552_04220 PF08345 Flagellar M-ring protein C-terminal AL552_04225 PF14841 FliG middle domain AL552_04225 PF14842 FliG N-terminal domain AL552_04225 PF01706 FliG C-terminal domain AL552_04250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_04250 PF03466 LysR substrate binding domain AL552_04280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL552_04285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_04285 PF03466 LysR substrate binding domain AL552_04305 PF00072 Response regulator receiver domain AL552_04305 PF00486 Transcriptional regulatory protein, C terminal AL552_04310 PF00512 His Kinase A (phospho-acceptor) domain AL552_04310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_04315 PF00080 Copper/zinc superoxide dismutase (SODC) AL552_04325 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL552_04330 PF03707 Bacterial signalling protein N terminal repeat AL552_04330 PF00990 Diguanylate cyclase, GGDEF domain AL552_04330 PF00563 EAL domain AL552_04330 PF13188 PAS domain AL552_04335 PF00155 Aminotransferase class I and II AL552_04340 PF08240 Alcohol dehydrogenase GroES-like domain AL552_04340 PF00107 Zinc-binding dehydrogenase AL552_04345 PF00194 Eukaryotic-type carbonic anhydrase AL552_04350 PF00924 Mechanosensitive ion channel AL552_04360 PF01070 FMN-dependent dehydrogenase AL552_04365 PF02652 L-lactate permease AL552_04370 PF03466 LysR substrate binding domain AL552_04370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_04375 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL552_04375 PF00326 Prolyl oligopeptidase family AL552_04380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL552_04380 PF00005 ABC transporter AL552_04400 PF13609 Gram-negative porin AL552_04405 PF07238 PilZ domain AL552_04405 PF12945 Flagellar protein YcgR AL552_04420 PF00583 Acetyltransferase (GNAT) family AL552_04425 PF12838 4Fe-4S dicluster domain AL552_04425 PF12800 4Fe-4S binding domain AL552_04430 PF13237 4Fe-4S dicluster domain AL552_04430 PF12801 4Fe-4S binding domain AL552_04450 PF12558 ATP-binding cassette cobalt transporter AL552_04450 PF00005 ABC transporter AL552_04455 PF07155 ECF-type riboflavin transporter, S component AL552_04460 PF00529 HlyD membrane-fusion protein of T1SS AL552_04460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL552_04465 PF11742 Protein of unknown function (DUF3302) AL552_04470 PF00990 Diguanylate cyclase, GGDEF domain AL552_04485 PF01048 Phosphorylase superfamily AL552_04495 PF08349 Protein of unknown function (DUF1722) AL552_04500 PF13411 MerR HTH family regulatory protein AL552_04505 PF00875 DNA photolyase AL552_04505 PF03441 FAD binding domain of DNA photolyase AL552_04510 PF03734 L,D-transpeptidase catalytic domain AL552_04510 PF01476 LysM domain AL552_04510 PF17969 L,D-transpeptidase C-terminal domain AL552_04520 PF00271 Helicase conserved C-terminal domain AL552_04520 PF00270 DEAD/DEAH box helicase AL552_04525 PF00326 Prolyl oligopeptidase family AL552_04525 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL552_04530 PF00593 TonB dependent receptor AL552_04530 PF07715 TonB-dependent Receptor Plug Domain AL552_04550 PF12729 Four helix bundle sensory module for signal transduction AL552_04550 PF00672 HAMP domain AL552_04550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_04555 PF12849 PBP superfamily domain AL552_04560 PF00528 Binding-protein-dependent transport system inner membrane component AL552_04565 PF00528 Binding-protein-dependent transport system inner membrane component AL552_04570 PF00005 ABC transporter AL552_04585 PF13519 von Willebrand factor type A domain AL552_04590 PF13519 von Willebrand factor type A domain AL552_04600 PF01882 Protein of unknown function DUF58 AL552_04605 PF17863 AAA lid domain AL552_04605 PF07726 ATPase family associated with various cellular activities (AAA) AL552_04615 PF02743 Cache domain AL552_04615 PF00672 HAMP domain AL552_04615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_04630 PF00196 Bacterial regulatory proteins, luxR family AL552_04640 PF00005 ABC transporter AL552_04640 PF00664 ABC transporter transmembrane region AL552_04655 PF01032 FecCD transport family AL552_04660 PF01497 Periplasmic binding protein AL552_04665 PF00005 ABC transporter AL552_04670 PF07715 TonB-dependent Receptor Plug Domain AL552_04670 PF00593 TonB dependent receptor AL552_04675 PF00664 ABC transporter transmembrane region AL552_04675 PF00005 ABC transporter AL552_04695 PF00873 AcrB/AcrD/AcrF family AL552_04700 PF13533 Biotin-lipoyl like AL552_04705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_04705 PF03466 LysR substrate binding domain AL552_04715 PF00579 tRNA synthetases class I (W and Y) AL552_04720 PF00072 Response regulator receiver domain AL552_04720 PF00196 Bacterial regulatory proteins, luxR family AL552_04730 PF00391 PEP-utilising enzyme, mobile domain AL552_04730 PF02896 PEP-utilising enzyme, TIM barrel domain AL552_04730 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL552_04735 PF03618 Kinase/pyrophosphorylase AL552_04740 PF17763 Glutaminase/Asparaginase C-terminal domain AL552_04740 PF00710 Asparaginase, N-terminal AL552_04750 PF03466 LysR substrate binding domain AL552_04750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_04760 PF01810 LysE type translocator AL552_04765 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AL552_04775 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL552_04780 PF00291 Pyridoxal-phosphate dependent enzyme AL552_04785 PF00202 Aminotransferase class-III AL552_04790 PF00171 Aldehyde dehydrogenase family AL552_04795 PF01037 Lrp/AsnC ligand binding domain AL552_04800 PF03480 Bacterial extracellular solute-binding protein, family 7 AL552_04810 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL552_04820 PF00155 Aminotransferase class I and II AL552_04820 PF00392 Bacterial regulatory proteins, gntR family AL552_04825 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL552_04830 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL552_04835 PF12833 Helix-turn-helix domain AL552_04850 PF08240 Alcohol dehydrogenase GroES-like domain AL552_04850 PF00107 Zinc-binding dehydrogenase AL552_04855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL552_04865 PF03466 LysR substrate binding domain AL552_04865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_04870 PF03466 LysR substrate binding domain AL552_04870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_04880 PF00270 DEAD/DEAH box helicase AL552_04880 PF00271 Helicase conserved C-terminal domain AL552_04890 PF00535 Glycosyl transferase family 2 AL552_04920 PF00155 Aminotransferase class I and II AL552_04925 PF12833 Helix-turn-helix domain AL552_04925 PF01497 Periplasmic binding protein AL552_04975 PF11471 Maltoporin periplasmic N-terminal extension AL552_04975 PF02264 LamB porin AL552_04980 PF00356 Bacterial regulatory proteins, lacI family AL552_04985 PF02378 Phosphotransferase system, EIIC AL552_04985 PF00367 phosphotransferase system, EIIB AL552_04990 PF00294 pfkB family carbohydrate kinase AL552_04995 PF08244 Glycosyl hydrolases family 32 C terminal AL552_04995 PF00251 Glycosyl hydrolases family 32 N-terminal domain AL552_05005 PF02798 Glutathione S-transferase, N-terminal domain AL552_05015 PF07943 Penicillin-binding protein 5, C-terminal domain AL552_05015 PF00768 D-alanyl-D-alanine carboxypeptidase AL552_05025 PF08534 Redoxin AL552_05025 PF00462 Glutaredoxin AL552_05030 PF00962 Adenosine/AMP deaminase AL552_05045 PF00313 'Cold-shock' DNA-binding domain AL552_05050 PF02678 Pirin AL552_05050 PF05726 Pirin C-terminal cupin domain AL552_05055 PF01734 Patatin-like phospholipase AL552_05070 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL552_05080 PF01219 Prokaryotic diacylglycerol kinase AL552_05090 PF00672 HAMP domain AL552_05090 PF16527 Two-component sensor protein CpxA, periplasmic domain AL552_05090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_05090 PF00512 His Kinase A (phospho-acceptor) domain AL552_05095 PF00486 Transcriptional regulatory protein, C terminal AL552_05095 PF00072 Response regulator receiver domain AL552_05110 PF01323 DSBA-like thioredoxin domain AL552_05125 PF00255 Glutathione peroxidase AL552_05130 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL552_05140 PF07690 Major Facilitator Superfamily AL552_05155 PF01966 HD domain AL552_05160 PF07969 Amidohydrolase family AL552_05165 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AL552_05170 PF00571 CBS domain AL552_05170 PF01769 Divalent cation transporter AL552_05170 PF03448 MgtE intracellular N domain AL552_05175 PF03109 ABC1 family AL552_05180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL552_05180 PF00529 HlyD membrane-fusion protein of T1SS AL552_05205 PF00072 Response regulator receiver domain AL552_05205 PF00486 Transcriptional regulatory protein, C terminal AL552_05210 PF00512 His Kinase A (phospho-acceptor) domain AL552_05210 PF16527 Two-component sensor protein CpxA, periplasmic domain AL552_05210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_05210 PF00672 HAMP domain AL552_05220 PF00392 Bacterial regulatory proteins, gntR family AL552_05220 PF00155 Aminotransferase class I and II AL552_05225 PF13520 Amino acid permease AL552_05260 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL552_05260 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL552_05265 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL552_05265 PF00672 HAMP domain AL552_05265 PF01627 Hpt domain AL552_05265 PF00512 His Kinase A (phospho-acceptor) domain AL552_05265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_05265 PF00072 Response regulator receiver domain AL552_05275 PF04363 Protein of unknown function (DUF496) AL552_05290 PF01541 GIY-YIG catalytic domain AL552_05300 PF13407 Periplasmic binding protein domain AL552_05305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_05305 PF00512 His Kinase A (phospho-acceptor) domain AL552_05305 PF09308 LuxQ, periplasmic AL552_05305 PF00072 Response regulator receiver domain AL552_05315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL552_05315 PF00529 HlyD membrane-fusion protein of T1SS AL552_05335 PF01037 Lrp/AsnC ligand binding domain AL552_05365 PF02355 Protein export membrane protein AL552_05365 PF13721 SecD export protein N-terminal TM region AL552_05365 PF07549 SecD/SecF GG Motif AL552_05380 PF01810 LysE type translocator AL552_05390 PF00106 short chain dehydrogenase AL552_05395 PF00108 Thiolase, N-terminal domain AL552_05395 PF02803 Thiolase, C-terminal domain AL552_05405 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL552_05415 PF03264 NapC/NirT cytochrome c family, N-terminal region AL552_05420 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL552_05425 PF00384 Molybdopterin oxidoreductase AL552_05425 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL552_05425 PF01568 Molydopterin dinucleotide binding domain AL552_05435 PF13187 4Fe-4S dicluster domain AL552_05435 PF12838 4Fe-4S dicluster domain AL552_05440 PF07730 Histidine kinase AL552_05440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_05440 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL552_05440 PF00672 HAMP domain AL552_05445 PF00196 Bacterial regulatory proteins, luxR family AL552_05445 PF00072 Response regulator receiver domain AL552_05465 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL552_05475 PF00873 AcrB/AcrD/AcrF family AL552_05480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_05480 PF00672 HAMP domain AL552_05480 PF17200 Single Cache domain 2 AL552_05485 PF00472 RF-1 domain AL552_05490 PF13419 Haloacid dehalogenase-like hydrolase AL552_05495 PF00691 OmpA family AL552_05495 PF01389 OmpA-like transmembrane domain AL552_05505 PF00793 DAHP synthetase I family AL552_05510 PF07690 Major Facilitator Superfamily AL552_05515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_05515 PF08447 PAS fold AL552_05520 PF02780 Transketolase, C-terminal domain AL552_05520 PF00456 Transketolase, thiamine diphosphate binding domain AL552_05520 PF02779 Transketolase, pyrimidine binding domain AL552_05525 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL552_05545 PF00704 Glycosyl hydrolases family 18 AL552_05545 PF08329 Chitinase A, N-terminal domain AL552_05550 PF00563 EAL domain AL552_05550 PF00990 Diguanylate cyclase, GGDEF domain AL552_05550 PF03707 Bacterial signalling protein N terminal repeat AL552_05555 PF00581 Rhodanese-like domain AL552_05575 PF00899 ThiF family AL552_05580 PF03454 MoeA C-terminal region (domain IV) AL552_05580 PF00994 Probable molybdopterin binding domain AL552_05580 PF03453 MoeA N-terminal region (domain I and II) AL552_05585 PF01227 GTP cyclohydrolase I AL552_05590 PF01566 Natural resistance-associated macrophage protein AL552_05600 PF00654 Voltage gated chloride channel AL552_05615 PF00248 Aldo/keto reductase family AL552_05620 PF00072 Response regulator receiver domain AL552_05630 PF03853 YjeF-related protein N-terminus AL552_05630 PF01256 Carbohydrate kinase AL552_05635 PF00478 IMP dehydrogenase / GMP reductase domain AL552_05640 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AL552_05650 PF01565 FAD binding domain AL552_05650 PF08031 Berberine and berberine like AL552_05670 PF01370 NAD dependent epimerase/dehydratase family AL552_05670 PF00551 Formyl transferase AL552_05670 PF02911 Formyl transferase, C-terminal domain AL552_05685 PF00392 Bacterial regulatory proteins, gntR family AL552_05690 PF00144 Beta-lactamase AL552_05700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL552_05710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_05710 PF03466 LysR substrate binding domain AL552_05725 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AL552_05730 PF07690 Major Facilitator Superfamily AL552_05750 PF00582 Universal stress protein family AL552_05760 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AL552_05760 PF00361 Proton-conducting membrane transporter AL552_05760 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AL552_05760 PF13244 Domain of unknown function (DUF4040) AL552_05780 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AL552_05785 PF03334 Na+/H+ antiporter subunit AL552_05790 PF07702 UTRA domain AL552_05790 PF00392 Bacterial regulatory proteins, gntR family AL552_05795 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL552_05795 PF02056 Family 4 glycosyl hydrolase AL552_05800 PF02378 Phosphotransferase system, EIIC AL552_05800 PF00367 phosphotransferase system, EIIB AL552_05805 PF13193 AMP-binding enzyme C-terminal domain AL552_05805 PF00501 AMP-binding enzyme AL552_05810 PF00766 Electron transfer flavoprotein FAD-binding domain AL552_05810 PF01012 Electron transfer flavoprotein domain AL552_05815 PF01012 Electron transfer flavoprotein domain AL552_05830 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL552_05830 PF00005 ABC transporter AL552_05835 PF00501 AMP-binding enzyme AL552_05855 PF00005 ABC transporter AL552_05860 PF14535 AMP-binding enzyme C-terminal domain AL552_05860 PF00501 AMP-binding enzyme AL552_05890 PF02028 BCCT, betaine/carnitine/choline family transporter AL552_05895 PF00106 short chain dehydrogenase AL552_05900 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL552_05900 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL552_05900 PF00205 Thiamine pyrophosphate enzyme, central domain AL552_05905 PF03306 Alpha-acetolactate decarboxylase AL552_05910 PF03466 LysR substrate binding domain AL552_05910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_05915 PF13419 Haloacid dehalogenase-like hydrolase AL552_05930 PF02322 Cytochrome bd terminal oxidase subunit II AL552_05935 PF01654 Cytochrome bd terminal oxidase subunit I AL552_05940 PF00392 Bacterial regulatory proteins, gntR family AL552_05940 PF00155 Aminotransferase class I and II AL552_05945 PF14602 Hexapeptide repeat of succinyl-transferase AL552_05945 PF12464 Maltose acetyltransferase AL552_05960 PF00072 Response regulator receiver domain AL552_05960 PF00512 His Kinase A (phospho-acceptor) domain AL552_05960 PF01627 Hpt domain AL552_05960 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL552_05960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_05960 PF00672 HAMP domain AL552_05965 PF00682 HMGL-like AL552_05970 PF00289 Biotin carboxylase, N-terminal domain AL552_05970 PF02785 Biotin carboxylase C-terminal domain AL552_05970 PF00364 Biotin-requiring enzyme AL552_05970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL552_05975 PF00378 Enoyl-CoA hydratase/isomerase AL552_05980 PF01039 Carboxyl transferase domain AL552_05985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL552_05985 PF02770 Acyl-CoA dehydrogenase, middle domain AL552_05985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL552_05990 PF09278 MerR, DNA binding AL552_05990 PF00376 MerR family regulatory protein AL552_05995 PF02803 Thiolase, C-terminal domain AL552_05995 PF00108 Thiolase, N-terminal domain AL552_06000 PF00171 Aldehyde dehydrogenase family AL552_06005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL552_06005 PF02770 Acyl-CoA dehydrogenase, middle domain AL552_06005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL552_06010 PF00378 Enoyl-CoA hydratase/isomerase AL552_06020 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL552_06020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL552_06035 PF13977 BetI-type transcriptional repressor, C-terminal AL552_06035 PF00440 Bacterial regulatory proteins, tetR family AL552_06040 PF00171 Aldehyde dehydrogenase family AL552_06045 PF00732 GMC oxidoreductase AL552_06045 PF05199 GMC oxidoreductase AL552_06050 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL552_06055 PF00528 Binding-protein-dependent transport system inner membrane component AL552_06060 PF00571 CBS domain AL552_06060 PF00005 ABC transporter AL552_06065 PF00881 Nitroreductase family AL552_06075 PF01145 SPFH domain / Band 7 family AL552_06075 PF16200 C-terminal region of band_7 AL552_06085 PF13188 PAS domain AL552_06085 PF03707 Bacterial signalling protein N terminal repeat AL552_06085 PF00990 Diguanylate cyclase, GGDEF domain AL552_06085 PF00563 EAL domain AL552_06090 PF00034 Cytochrome c AL552_06090 PF03150 Di-haem cytochrome c peroxidase AL552_06115 PF04116 Fatty acid hydroxylase superfamily AL552_06165 PF05025 RbsD / FucU transport protein family AL552_06170 PF00005 ABC transporter AL552_06175 PF02653 Branched-chain amino acid transport system / permease component AL552_06180 PF13407 Periplasmic binding protein domain AL552_06185 PF00294 pfkB family carbohydrate kinase AL552_06190 PF00356 Bacterial regulatory proteins, lacI family AL552_06200 PF04973 Nicotinamide mononucleotide transporter AL552_06215 PF01497 Periplasmic binding protein AL552_06220 PF01032 FecCD transport family AL552_06225 PF01032 FecCD transport family AL552_06230 PF00005 ABC transporter AL552_06235 PF13411 MerR HTH family regulatory protein AL552_06240 PF12833 Helix-turn-helix domain AL552_06275 PF12805 FUSC-like inner membrane protein yccS AL552_06280 PF12462 DNA helicase IV / RNA helicase N terminal AL552_06280 PF00580 UvrD/REP helicase N-terminal domain AL552_06280 PF13361 UvrD-like helicase C-terminal domain AL552_06285 PF02142 MGS-like domain AL552_06290 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL552_06310 PF00486 Transcriptional regulatory protein, C terminal AL552_06310 PF00072 Response regulator receiver domain AL552_06315 PF00884 Sulfatase AL552_06320 PF03466 LysR substrate binding domain AL552_06320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_06325 PF16385 Domain of unknown function AL552_06325 PF00884 Sulfatase AL552_06330 PF13186 Iron-sulfur cluster-binding domain AL552_06330 PF04055 Radical SAM superfamily AL552_06335 PF07726 ATPase family associated with various cellular activities (AAA) AL552_06335 PF17863 AAA lid domain AL552_06350 PF00092 von Willebrand factor type A domain AL552_06365 PF01872 RibD C-terminal domain AL552_06365 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL552_06370 PF03466 LysR substrate binding domain AL552_06370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_06375 PF00781 Diacylglycerol kinase catalytic domain AL552_06380 PF04076 Bacterial OB fold (BOF) protein AL552_06390 PF18081 Fanconi anemia-associated nuclease SAP domain AL552_06390 PF08774 VRR-NUC domain AL552_06405 PF01435 Peptidase family M48 AL552_06410 PF04011 LemA family AL552_06415 PF03606 C4-dicarboxylate anaerobic carrier AL552_06435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_06435 PF00072 Response regulator receiver domain AL552_06440 PF00155 Aminotransferase class I and II AL552_06445 PF01926 50S ribosome-binding GTPase AL552_06450 PF03707 Bacterial signalling protein N terminal repeat AL552_06450 PF00990 Diguanylate cyclase, GGDEF domain AL552_06450 PF00563 EAL domain AL552_06455 PF08448 PAS fold AL552_06455 PF00990 Diguanylate cyclase, GGDEF domain AL552_06465 PF00072 Response regulator receiver domain AL552_06465 PF00196 Bacterial regulatory proteins, luxR family AL552_06470 PF01584 CheW-like domain AL552_06470 PF00072 Response regulator receiver domain AL552_06475 PF08334 Type II secretion system (T2SS), protein G AL552_06475 PF07963 Prokaryotic N-terminal methylation motif AL552_06485 PF00892 EamA-like transporter family AL552_06510 PF01447 Thermolysin metallopeptidase, catalytic domain AL552_06510 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL552_06510 PF03413 Peptidase propeptide and YPEB domain AL552_06510 PF04151 Bacterial pre-peptidase C-terminal domain AL552_06510 PF07504 Fungalysin/Thermolysin Propeptide Motif AL552_06515 PF00893 Small Multidrug Resistance protein AL552_06520 PF00892 EamA-like transporter family AL552_06535 PF00171 Aldehyde dehydrogenase family AL552_06545 PF13187 4Fe-4S dicluster domain AL552_06545 PF01645 Conserved region in glutamate synthase AL552_06550 PF00141 Peroxidase AL552_06565 PF01757 Acyltransferase family AL552_06575 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL552_06580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL552_06605 PF01769 Divalent cation transporter AL552_06605 PF03448 MgtE intracellular N domain AL552_06605 PF00571 CBS domain AL552_06635 PF01327 Polypeptide deformylase AL552_06640 PF09278 MerR, DNA binding AL552_06640 PF00376 MerR family regulatory protein AL552_06650 PF02253 Phospholipase A1 AL552_06670 PF00664 ABC transporter transmembrane region AL552_06670 PF00005 ABC transporter AL552_06675 PF00929 Exonuclease AL552_06675 PF02811 PHP domain AL552_06675 PF11490 DNA polymerase III polC-type N-terminus II AL552_06675 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL552_06675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL552_06675 PF14579 Helix-hairpin-helix motif AL552_06700 PF02627 Carboxymuconolactone decarboxylase family AL552_06710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL552_06715 PF02347 Glycine cleavage system P-protein AL552_06720 PF01597 Glycine cleavage H-protein AL552_06725 PF00464 Serine hydroxymethyltransferase AL552_06735 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL552_06735 PF01571 Aminomethyltransferase folate-binding domain AL552_06745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL552_06755 PF00873 AcrB/AcrD/AcrF family AL552_06765 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL552_06765 PF02378 Phosphotransferase system, EIIC AL552_06775 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL552_06775 PF00381 PTS HPr component phosphorylation site AL552_06780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL552_06780 PF00356 Bacterial regulatory proteins, lacI family AL552_06795 PF00989 PAS fold AL552_06795 PF01590 GAF domain AL552_06795 PF00563 EAL domain AL552_06795 PF00990 Diguanylate cyclase, GGDEF domain AL552_06800 PF00528 Binding-protein-dependent transport system inner membrane component AL552_06805 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL552_06810 PF00528 Binding-protein-dependent transport system inner membrane component AL552_06815 PF00005 ABC transporter AL552_06820 PF00224 Pyruvate kinase, barrel domain AL552_06820 PF02887 Pyruvate kinase, alpha/beta domain AL552_06825 PF07690 Major Facilitator Superfamily AL552_06835 PF00672 HAMP domain AL552_06835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_06835 PF00512 His Kinase A (phospho-acceptor) domain AL552_06840 PF02954 Bacterial regulatory protein, Fis family AL552_06840 PF14532 Sigma-54 interaction domain AL552_06840 PF00072 Response regulator receiver domain AL552_06850 PF00465 Iron-containing alcohol dehydrogenase AL552_06860 PF06483 Chitinase C AL552_06860 PF00704 Glycosyl hydrolases family 18 AL552_06865 PF00483 Nucleotidyl transferase AL552_06870 PF01268 Formate--tetrahydrofolate ligase AL552_06875 PF00294 pfkB family carbohydrate kinase AL552_06890 PF13419 Haloacid dehalogenase-like hydrolase AL552_06900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_06900 PF00672 HAMP domain AL552_06900 PF12729 Four helix bundle sensory module for signal transduction AL552_06910 PF04336 Acyl carrier protein phosphodiesterase AL552_06915 PF00270 DEAD/DEAH box helicase AL552_06915 PF00271 Helicase conserved C-terminal domain AL552_06920 PF00563 EAL domain AL552_06920 PF12792 CSS motif domain associated with EAL AL552_06935 PF01292 Prokaryotic cytochrome b561 AL552_06940 PF04264 YceI-like domain AL552_06945 PF01226 Formate/nitrite transporter AL552_06955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_06955 PF03466 LysR substrate binding domain AL552_06960 PF06496 Protein of unknown function (DUF1097) AL552_06965 PF11398 Protein of unknown function (DUF2813) AL552_06970 PF00149 Calcineurin-like phosphoesterase AL552_06970 PF02872 5'-nucleotidase, C-terminal domain AL552_06975 PF03741 Integral membrane protein TerC family AL552_07000 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL552_07015 PF03061 Thioesterase superfamily AL552_07025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL552_07025 PF12793 Sugar transport-related sRNA regulator N-term AL552_07050 PF00226 DnaJ domain AL552_07050 PF01556 DnaJ C terminal domain AL552_07050 PF00684 DnaJ central domain AL552_07060 PF00498 FHA domain AL552_07060 PF00990 Diguanylate cyclase, GGDEF domain AL552_07060 PF00563 EAL domain AL552_07065 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL552_07065 PF07055 Enoyl reductase FAD binding domain AL552_07065 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL552_07070 PF13472 GDSL-like Lipase/Acylhydrolase family AL552_07075 PF00005 ABC transporter AL552_07090 PF02626 Carboxyltransferase domain, subdomain A and B AL552_07095 PF02682 Carboxyltransferase domain, subdomain C and D AL552_07100 PF03746 LamB/YcsF family AL552_07105 PF00563 EAL domain AL552_07105 PF00990 Diguanylate cyclase, GGDEF domain AL552_07105 PF08448 PAS fold AL552_07105 PF13426 PAS domain AL552_07105 PF05231 MASE1 AL552_07105 PF08447 PAS fold AL552_07110 PF16363 GDP-mannose 4,6 dehydratase AL552_07120 PF07715 TonB-dependent Receptor Plug Domain AL552_07120 PF04886 PT repeat AL552_07120 PF00593 TonB dependent receptor AL552_07125 PF03466 LysR substrate binding domain AL552_07125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_07130 PF00583 Acetyltransferase (GNAT) family AL552_07130 PF13380 CoA binding domain AL552_07130 PF13607 Succinyl-CoA ligase like flavodoxin domain AL552_07140 PF05036 Sporulation related domain AL552_07145 PF07478 D-ala D-ala ligase C-terminus AL552_07145 PF01820 D-ala D-ala ligase N-terminus AL552_07155 PF01253 Translation initiation factor SUI1 AL552_07195 PF05707 Zonular occludens toxin (Zot) AL552_07230 PF03466 LysR substrate binding domain AL552_07230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_07240 PF00582 Universal stress protein family AL552_07245 PF03701 Uncharacterised protein family (UPF0181) AL552_07260 PF00072 Response regulator receiver domain AL552_07260 PF00486 Transcriptional regulatory protein, C terminal AL552_07270 PF02233 NAD(P) transhydrogenase beta subunit AL552_07275 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL552_07275 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL552_07275 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL552_07290 PF00990 Diguanylate cyclase, GGDEF domain AL552_07290 PF00072 Response regulator receiver domain AL552_07300 PF00360 Phytochrome region AL552_07300 PF01590 GAF domain AL552_07300 PF00563 EAL domain AL552_07300 PF00990 Diguanylate cyclase, GGDEF domain AL552_07310 PF03459 TOBE domain AL552_07310 PF00005 ABC transporter AL552_07315 PF00528 Binding-protein-dependent transport system inner membrane component AL552_07325 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL552_07325 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL552_07340 PF08443 RimK-like ATP-grasp domain AL552_07340 PF18030 RimK PreATP-grasp domain AL552_07345 PF00155 Aminotransferase class I and II AL552_07350 PF12833 Helix-turn-helix domain AL552_07350 PF12852 Cupin AL552_07355 PF01554 MatE AL552_07365 PF03477 ATP cone domain AL552_07365 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL552_07375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL552_07380 PF00873 AcrB/AcrD/AcrF family AL552_07390 PF04143 Sulphur transport AL552_07405 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_07405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL552_07410 PF01177 Asp/Glu/Hydantoin racemase AL552_07415 PF02567 Phenazine biosynthesis-like protein AL552_07425 PF00384 Molybdopterin oxidoreductase AL552_07435 PF03466 LysR substrate binding domain AL552_07435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_07440 PF02634 FdhD/NarQ family AL552_07445 PF07690 Major Facilitator Superfamily AL552_07450 PF00196 Bacterial regulatory proteins, luxR family AL552_07450 PF00072 Response regulator receiver domain AL552_07455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_07455 PF07730 Histidine kinase AL552_07455 PF05231 MASE1 AL552_07460 PF07690 Major Facilitator Superfamily AL552_07465 PF01238 Phosphomannose isomerase type I AL552_07490 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL552_07490 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL552_07495 PF00085 Thioredoxin AL552_07500 PF07690 Major Facilitator Superfamily AL552_07505 PF11756 Nitrous oxide-stimulated promoter AL552_07520 PF00593 TonB dependent receptor AL552_07520 PF07715 TonB-dependent Receptor Plug Domain AL552_07530 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL552_07545 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL552_07545 PF14824 Sirohaem biosynthesis protein central AL552_07545 PF10414 Sirohaem synthase dimerisation region AL552_07550 PF01226 Formate/nitrite transporter AL552_07555 PF13806 Rieske-like [2Fe-2S] domain AL552_07560 PF04324 BFD-like [2Fe-2S] binding domain AL552_07560 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL552_07560 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_07560 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL552_07560 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL552_07565 PF14760 Rnk N-terminus AL552_07565 PF01272 Transcription elongation factor, GreA/GreB, C-term AL552_07575 PF13426 PAS domain AL552_07575 PF00990 Diguanylate cyclase, GGDEF domain AL552_07575 PF00563 EAL domain AL552_07630 PF00128 Alpha amylase, catalytic domain AL552_07630 PF09154 Domain of unknown function (DUF1939) AL552_07645 PF00672 HAMP domain AL552_07645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_07650 PF01168 Alanine racemase, N-terminal domain AL552_07650 PF00842 Alanine racemase, C-terminal domain AL552_07665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_07665 PF03466 LysR substrate binding domain AL552_07670 PF01168 Alanine racemase, N-terminal domain AL552_07670 PF14031 Putative serine dehydratase domain AL552_07675 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL552_07685 PF01565 FAD binding domain AL552_07685 PF09330 D-lactate dehydrogenase, membrane binding AL552_07690 PF03466 LysR substrate binding domain AL552_07690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_07705 PF05762 VWA domain containing CoxE-like protein AL552_07710 PF12592 Protein of unknown function (DUF3763) AL552_07710 PF07728 AAA domain (dynein-related subfamily) AL552_07710 PF17868 AAA lid domain AL552_07720 PF01212 Beta-eliminating lyase AL552_07725 PF00034 Cytochrome c AL552_07730 PF03606 C4-dicarboxylate anaerobic carrier AL552_07740 PF08212 Lipocalin-like domain AL552_07750 PF13476 AAA domain AL552_07755 PF00149 Calcineurin-like phosphoesterase AL552_07755 PF12320 Type 5 capsule protein repressor C-terminal domain AL552_07770 PF04717 Type VI secretion system, phage-baseplate injector AL552_07770 PF16671 Actin cross-linking domain AL552_07780 PF10431 C-terminal, D2-small domain, of ClpB protein AL552_07780 PF07724 AAA domain (Cdc48 subfamily) AL552_07780 PF00004 ATPase family associated with various cellular activities (AAA) AL552_07780 PF17871 AAA lid domain AL552_07865 PF03793 PASTA domain AL552_07865 PF00069 Protein kinase domain AL552_07885 PF00072 Response regulator receiver domain AL552_07885 PF00211 Adenylate and Guanylate cyclase catalytic domain AL552_07900 PF08361 MAATS-type transcriptional repressor, C-terminal region AL552_07900 PF00440 Bacterial regulatory proteins, tetR family AL552_07915 PF04324 BFD-like [2Fe-2S] binding domain AL552_07915 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL552_07915 PF13806 Rieske-like [2Fe-2S] domain AL552_07915 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL552_07915 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_07915 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL552_07920 PF00005 ABC transporter AL552_07925 PF00528 Binding-protein-dependent transport system inner membrane component AL552_07930 PF00005 ABC transporter AL552_07940 PF03861 ANTAR domain AL552_07940 PF00072 Response regulator receiver domain AL552_07945 PF01738 Dienelactone hydrolase family AL552_07950 PF00591 Glycosyl transferase family, a/b domain AL552_07950 PF02885 Glycosyl transferase family, helical bundle domain AL552_07970 PF03222 Tryptophan/tyrosine permease family AL552_07990 PF00082 Subtilase family AL552_07990 PF01483 Proprotein convertase P-domain AL552_08010 PF00486 Transcriptional regulatory protein, C terminal AL552_08010 PF00072 Response regulator receiver domain AL552_08045 PF04314 Copper chaperone PCu(A)C AL552_08050 PF00012 Hsp70 protein AL552_08065 PF00676 Dehydrogenase E1 component AL552_08070 PF02779 Transketolase, pyrimidine binding domain AL552_08070 PF02780 Transketolase, C-terminal domain AL552_08105 PF01389 OmpA-like transmembrane domain AL552_08105 PF00691 OmpA family AL552_08125 PF00528 Binding-protein-dependent transport system inner membrane component AL552_08130 PF00528 Binding-protein-dependent transport system inner membrane component AL552_08135 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL552_08140 PF00005 ABC transporter AL552_08170 PF02028 BCCT, betaine/carnitine/choline family transporter AL552_08210 PF01385 Probable transposase AL552_08210 PF07282 Putative transposase DNA-binding domain AL552_08210 PF12323 Helix-turn-helix domain AL552_08240 PF17762 HTH domain found in ParB protein AL552_08240 PF02195 ParB-like nuclease domain AL552_08245 PF13614 AAA domain AL552_08340 PF00216 Bacterial DNA-binding protein AL552_08345 PF00216 Bacterial DNA-binding protein AL552_08375 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AL552_08435 PF00313 'Cold-shock' DNA-binding domain AL552_08510 PF00072 Response regulator receiver domain AL552_08510 PF00990 Diguanylate cyclase, GGDEF domain AL552_08540 PF12323 Helix-turn-helix domain AL552_08540 PF01385 Probable transposase AL552_08540 PF07282 Putative transposase DNA-binding domain AL552_08560 PF03773 Predicted permease AL552_08575 PF00313 'Cold-shock' DNA-binding domain AL552_08585 PF06965 Na+/H+ antiporter 1 AL552_08605 PF00313 'Cold-shock' DNA-binding domain AL552_08900 PF03631 Virulence factor BrkB AL552_08905 PF02580 D-Tyr-tRNA(Tyr) deacylase AL552_08910 PF00583 Acetyltransferase (GNAT) family AL552_08910 PF09500 Putative thioesterase (yiiD_Cterm) AL552_08920 PF01293 Phosphoenolpyruvate carboxykinase AL552_08925 PF01430 Hsp33 protein AL552_08930 PF01479 S4 domain AL552_08935 PF11356 Type II secretion system protein C AL552_08940 PF03958 Bacterial type II/III secretion system short domain AL552_08940 PF00263 Bacterial type II and III secretion system protein AL552_08945 PF00437 Type II/IV secretion system protein AL552_08950 PF00482 Type II secretion system (T2SS), protein F AL552_08955 PF08334 Type II secretion system (T2SS), protein G AL552_08955 PF07963 Prokaryotic N-terminal methylation motif AL552_08960 PF12019 Type II transport protein GspH AL552_08965 PF07963 Prokaryotic N-terminal methylation motif AL552_08965 PF02501 Type II secretion system (T2SS), protein I AL552_08975 PF03934 Type II secretion system (T2SS), protein K AL552_08980 PF05134 Type II secretion system (T2SS), protein L AL552_08980 PF12693 GspL periplasmic domain AL552_08985 PF04612 Type II secretion system (T2SS), protein M AL552_08990 PF01203 Type II secretion system (T2SS), protein N AL552_08995 PF00459 Inositol monophosphatase family AL552_09000 PF00293 NUDIX domain AL552_09005 PF01521 Iron-sulphur cluster biosynthesis AL552_09005 PF01106 NifU-like domain AL552_09010 PF00156 Phosphoribosyl transferase domain AL552_09015 PF00561 alpha/beta hydrolase fold AL552_09025 PF00575 S1 RNA binding domain AL552_09025 PF09371 Tex-like protein N-terminal domain AL552_09025 PF17674 HHH domain AL552_09025 PF16921 Tex protein YqgF-like domain AL552_09035 PF01272 Transcription elongation factor, GreA/GreB, C-term AL552_09035 PF03449 Transcription elongation factor, N-terminal AL552_09045 PF00486 Transcriptional regulatory protein, C terminal AL552_09045 PF00072 Response regulator receiver domain AL552_09050 PF00512 His Kinase A (phospho-acceptor) domain AL552_09050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_09050 PF00672 HAMP domain AL552_09055 PF00860 Permease family AL552_09060 PF00270 DEAD/DEAH box helicase AL552_09060 PF00271 Helicase conserved C-terminal domain AL552_09060 PF17191 RecG wedge domain AL552_09065 PF00588 SpoU rRNA Methylase family AL552_09065 PF12105 SpoU, rRNA methylase, C-terminal AL552_09070 PF13291 ACT domain AL552_09070 PF04607 Region found in RelA / SpoT proteins AL552_09070 PF02824 TGS domain AL552_09075 PF01192 RNA polymerase Rpb6 AL552_09080 PF00625 Guanylate kinase AL552_09095 PF02472 Biopolymer transport protein ExbD/TolR AL552_09100 PF01618 MotA/TolQ/ExbB proton channel family AL552_09115 PF07715 TonB-dependent Receptor Plug Domain AL552_09115 PF00593 TonB dependent receptor AL552_09125 PF00528 Binding-protein-dependent transport system inner membrane component AL552_09140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL552_09140 PF00005 ABC transporter AL552_09145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL552_09145 PF00005 ABC transporter AL552_09165 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL552_09235 PF03755 YicC-like family, N-terminal region AL552_09235 PF08340 Domain of unknown function (DUF1732) AL552_09245 PF03725 3' exoribonuclease family, domain 2 AL552_09245 PF01138 3' exoribonuclease family, domain 1 AL552_09250 PF00156 Phosphoribosyl transferase domain AL552_09255 PF03279 Bacterial lipid A biosynthesis acyltransferase AL552_09260 PF00440 Bacterial regulatory proteins, tetR family AL552_09265 PF02441 Flavoprotein AL552_09265 PF04127 DNA / pantothenate metabolism flavoprotein AL552_09275 PF00672 HAMP domain AL552_09275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_09275 PF17200 Single Cache domain 2 AL552_09280 PF04002 RadC-like JAB domain AL552_09285 PF00830 Ribosomal L28 family AL552_09290 PF00471 Ribosomal protein L33 AL552_09300 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL552_09300 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL552_09300 PF06827 Zinc finger found in FPG and IleRS AL552_09305 PF05686 Glycosyl transferase family 90 AL552_09310 PF01467 Cytidylyltransferase-like AL552_09315 PF13439 Glycosyltransferase Family 4 AL552_09315 PF00534 Glycosyl transferases group 1 AL552_09320 PF00535 Glycosyl transferase family 2 AL552_09325 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL552_09330 PF01219 Prokaryotic diacylglycerol kinase AL552_09340 PF16363 GDP-mannose 4,6 dehydratase AL552_09345 PF00483 Nucleotidyl transferase AL552_09350 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AL552_09355 PF08889 WbqC-like protein family AL552_09365 PF00535 Glycosyl transferase family 2 AL552_09370 PF00009 Elongation factor Tu GTP binding domain AL552_09380 PF01507 Phosphoadenosine phosphosulfate reductase family AL552_09385 PF02080 TrkA-C domain AL552_09385 PF03600 Citrate transporter AL552_09390 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL552_09395 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL552_09405 PF03279 Bacterial lipid A biosynthesis acyltransferase AL552_09410 PF01370 NAD dependent epimerase/dehydratase family AL552_09415 PF06082 Exopolysaccharide biosynthesis protein YbjH AL552_09425 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF AL552_09440 PF07963 Prokaryotic N-terminal methylation motif AL552_09440 PF08334 Type II secretion system (T2SS), protein G AL552_09445 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL552_09445 PF00437 Type II/IV secretion system protein AL552_09450 PF00482 Type II secretion system (T2SS), protein F AL552_09455 PF07963 Prokaryotic N-terminal methylation motif AL552_09455 PF00114 Pilin (bacterial filament) AL552_09460 PF00263 Bacterial type II and III secretion system protein AL552_09460 PF03958 Bacterial type II/III secretion system short domain AL552_09515 PF00535 Glycosyl transferase family 2 AL552_09540 PF00535 Glycosyl transferase family 2 AL552_09545 PF02397 Bacterial sugar transferase AL552_09555 PF00953 Glycosyl transferase family 4 AL552_09585 PF01370 NAD dependent epimerase/dehydratase family AL552_09590 PF00534 Glycosyl transferases group 1 AL552_09600 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL552_09600 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL552_09600 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL552_09605 PF00483 Nucleotidyl transferase AL552_09610 PF00121 Triosephosphate isomerase AL552_09635 PF08220 DeoR-like helix-turn-helix domain AL552_09635 PF00455 DeoR C terminal sensor domain AL552_09640 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AL552_09650 PF06005 Cell division protein ZapB AL552_09655 PF03737 Aldolase/RraA AL552_09660 PF01040 UbiA prenyltransferase family AL552_09665 PF07724 AAA domain (Cdc48 subfamily) AL552_09665 PF00004 ATPase family associated with various cellular activities (AAA) AL552_09670 PF00227 Proteasome subunit AL552_09680 PF00356 Bacterial regulatory proteins, lacI family AL552_09685 PF00271 Helicase conserved C-terminal domain AL552_09685 PF17764 3′ DNA-binding domain (3′BD) AL552_09685 PF00270 DEAD/DEAH box helicase AL552_09685 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL552_09685 PF18074 Primosomal protein N C-terminal domain AL552_09695 PF01197 Ribosomal protein L31 AL552_09700 PF00338 Ribosomal protein S10p/S20e AL552_09705 PF00297 Ribosomal protein L3 AL552_09710 PF00573 Ribosomal protein L4/L1 family AL552_09715 PF00276 Ribosomal protein L23 AL552_09720 PF00181 Ribosomal Proteins L2, RNA binding domain AL552_09720 PF03947 Ribosomal Proteins L2, C-terminal domain AL552_09725 PF00203 Ribosomal protein S19 AL552_09730 PF00237 Ribosomal protein L22p/L17e AL552_09735 PF07650 KH domain AL552_09735 PF00189 Ribosomal protein S3, C-terminal domain AL552_09740 PF00252 Ribosomal protein L16p/L10e AL552_09745 PF00831 Ribosomal L29 protein AL552_09750 PF00366 Ribosomal protein S17 AL552_09755 PF00238 Ribosomal protein L14p/L23e AL552_09760 PF00467 KOW motif AL552_09760 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL552_09765 PF00673 ribosomal L5P family C-terminus AL552_09765 PF00281 Ribosomal protein L5 AL552_09770 PF00253 Ribosomal protein S14p/S29e AL552_09775 PF00410 Ribosomal protein S8 AL552_09780 PF00347 Ribosomal protein L6 AL552_09785 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL552_09790 PF03719 Ribosomal protein S5, C-terminal domain AL552_09790 PF00333 Ribosomal protein S5, N-terminal domain AL552_09795 PF00327 Ribosomal protein L30p/L7e AL552_09805 PF00344 SecY translocase AL552_09810 PF00444 Ribosomal protein L36 AL552_09815 PF00416 Ribosomal protein S13/S18 AL552_09820 PF00411 Ribosomal protein S11 AL552_09825 PF01479 S4 domain AL552_09825 PF00163 Ribosomal protein S4/S9 N-terminal domain AL552_09830 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL552_09830 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL552_09830 PF01000 RNA polymerase Rpb3/RpoA insert domain AL552_09835 PF01196 Ribosomal protein L17 AL552_09845 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL552_09845 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL552_09855 PF13673 Acetyltransferase (GNAT) domain AL552_09860 PF00271 Helicase conserved C-terminal domain AL552_09860 PF00270 DEAD/DEAH box helicase AL552_09860 PF03880 DbpA RNA binding domain AL552_09870 PF00149 Calcineurin-like phosphoesterase AL552_09870 PF02872 5'-nucleotidase, C-terminal domain AL552_09880 PF01507 Phosphoadenosine phosphosulfate reductase family AL552_09885 PF00009 Elongation factor Tu GTP binding domain AL552_09890 PF03600 Citrate transporter AL552_09890 PF02080 TrkA-C domain AL552_09915 PF00005 ABC transporter AL552_09925 PF10795 Protein of unknown function (DUF2607) AL552_09930 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL552_09935 PF06526 Protein of unknown function (DUF1107) AL552_09940 PF01625 Peptide methionine sulfoxide reductase AL552_09945 PF01103 Surface antigen AL552_09945 PF17243 POTRA domain TamA domain 1 AL552_09950 PF04357 TamB, inner membrane protein subunit of TAM complex AL552_09955 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AL552_09965 PF00719 Inorganic pyrophosphatase AL552_09970 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL552_09980 PF08245 Mur ligase middle domain AL552_09980 PF02875 Mur ligase family, glutamate ligase domain AL552_09980 PF01225 Mur ligase family, catalytic domain AL552_09985 PF02441 Flavoprotein AL552_09995 PF00528 Binding-protein-dependent transport system inner membrane component AL552_10000 PF00005 ABC transporter AL552_10005 PF03466 LysR substrate binding domain AL552_10005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_10025 PF16868 NMT1-like family AL552_10035 PF02863 Arginine repressor, C-terminal domain AL552_10035 PF01316 Arginine repressor, DNA binding domain AL552_10040 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL552_10040 PF00056 lactate/malate dehydrogenase, NAD binding domain AL552_10050 PF00348 Polyprenyl synthetase AL552_10055 PF00829 Ribosomal prokaryotic L21 protein AL552_10060 PF01016 Ribosomal L27 protein AL552_10065 PF01926 50S ribosome-binding GTPase AL552_10065 PF01018 GTP1/OBG AL552_10070 PF06738 Putative threonine/serine exporter AL552_10075 PF12821 Threonine/Serine exporter, ThrE AL552_10080 PF00186 Dihydrofolate reductase AL552_10085 PF00149 Calcineurin-like phosphoesterase AL552_10090 PF04379 ApaG domain AL552_10095 PF00398 Ribosomal RNA adenine dimethylase AL552_10100 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL552_10105 PF09312 SurA N-terminal domain AL552_10110 PF04453 LPS transport system D AL552_10110 PF03968 OstA-like protein AL552_10115 PF00226 DnaJ domain AL552_10115 PF05099 Tellurite resistance protein TerB AL552_10125 PF00694 Aconitase C-terminal domain AL552_10130 PF00330 Aconitase family (aconitate hydratase) AL552_10135 PF00180 Isocitrate/isopropylmalate dehydrogenase AL552_10140 PF08502 LeuA allosteric (dimerisation) domain AL552_10140 PF00682 HMGL-like AL552_10155 PF01569 PAP2 superfamily AL552_10165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_10165 PF03466 LysR substrate binding domain AL552_10175 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL552_10175 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL552_10175 PF00205 Thiamine pyrophosphate enzyme, central domain AL552_10180 PF10369 Small subunit of acetolactate synthase AL552_10185 PF00990 Diguanylate cyclase, GGDEF domain AL552_10185 PF07694 5TMR of 5TMR-LYT AL552_10195 PF02887 Pyruvate kinase, alpha/beta domain AL552_10195 PF00224 Pyruvate kinase, barrel domain AL552_10205 PF00455 DeoR C terminal sensor domain AL552_10205 PF08220 DeoR-like helix-turn-helix domain AL552_10210 PF01380 SIS domain AL552_10220 PF00072 Response regulator receiver domain AL552_10220 PF00486 Transcriptional regulatory protein, C terminal AL552_10225 PF00512 His Kinase A (phospho-acceptor) domain AL552_10225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_10225 PF00672 HAMP domain AL552_10230 PF00465 Iron-containing alcohol dehydrogenase AL552_10235 PF02733 Dak1 domain AL552_10240 PF02734 DAK2 domain AL552_10245 PF05524 PEP-utilising enzyme, N-terminal AL552_10245 PF00391 PEP-utilising enzyme, mobile domain AL552_10245 PF02896 PEP-utilising enzyme, TIM barrel domain AL552_10250 PF00158 Sigma-54 interaction domain AL552_10250 PF02954 Bacterial regulatory protein, Fis family AL552_10250 PF00989 PAS fold AL552_10255 PF05068 Mannitol repressor AL552_10260 PF01232 Mannitol dehydrogenase Rossmann domain AL552_10260 PF08125 Mannitol dehydrogenase C-terminal domain AL552_10265 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL552_10265 PF02378 Phosphotransferase system, EIIC AL552_10265 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL552_10300 PF03180 NLPA lipoprotein AL552_10310 PF04539 Sigma-70 region 3 AL552_10310 PF04546 Sigma-70, non-essential region AL552_10310 PF03979 Sigma-70 factor, region 1.1 AL552_10310 PF00140 Sigma-70 factor, region 1.2 AL552_10310 PF04542 Sigma-70 region 2 AL552_10310 PF04545 Sigma-70, region 4 AL552_10315 PF10410 DnaB-helicase binding domain of primase AL552_10315 PF08275 DNA primase catalytic core, N-terminal domain AL552_10315 PF08278 DNA primase DnaG DnaB-binding AL552_10315 PF01807 CHC2 zinc finger AL552_10320 PF09424 Yqey-like protein AL552_10325 PF01165 Ribosomal protein S21 AL552_10330 PF00814 Glycoprotease family AL552_10335 PF00561 alpha/beta hydrolase fold AL552_10340 PF02660 Glycerol-3-phosphate acyltransferase AL552_10345 PF02152 Dihydroneopterin aldolase AL552_10350 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL552_10355 PF02673 Bacitracin resistance protein BacA AL552_10360 PF01966 HD domain AL552_10360 PF01743 Poly A polymerase head domain AL552_10360 PF12627 Probable RNA and SrmB- binding site of polymerase A AL552_10365 PF01471 Putative peptidoglycan binding domain AL552_10365 PF13401 AAA domain AL552_10380 PF08239 Bacterial SH3 domain AL552_10385 PF01384 Phosphate transporter family AL552_10390 PF01865 Protein of unknown function DUF47 AL552_10395 PF01928 CYTH domain AL552_10405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_10405 PF00672 HAMP domain AL552_10405 PF02743 Cache domain AL552_10415 PF00294 pfkB family carbohydrate kinase AL552_10415 PF01467 Cytidylyltransferase-like AL552_10420 PF02321 Outer membrane efflux protein AL552_10425 PF00293 NUDIX domain AL552_10430 PF06853 Protein of unknown function (DUF1249) AL552_10435 PF00149 Calcineurin-like phosphoesterase AL552_10440 PF05728 Uncharacterised protein family (UPF0227) AL552_10445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_10445 PF00204 DNA gyrase B AL552_10445 PF00986 DNA gyrase B subunit, carboxyl terminus AL552_10445 PF01751 Toprim domain AL552_10450 PF00521 DNA gyrase/topoisomerase IV, subunit A AL552_10450 PF03989 DNA gyrase C-terminal domain, beta-propeller AL552_10455 PF13180 PDZ domain AL552_10460 PF00595 PDZ domain AL552_10465 PF06295 Protein of unknown function (DUF1043) AL552_10475 PF03969 AFG1-like ATPase AL552_10485 PF00572 Ribosomal protein L13 AL552_10490 PF00380 Ribosomal protein S9/S16 AL552_10495 PF00355 Rieske [2Fe-2S] domain AL552_10495 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL552_10500 PF00033 Cytochrome b/b6/petB AL552_10500 PF00032 Cytochrome b(C-terminal)/b6/petD AL552_10505 PF02167 Cytochrome C1 family AL552_10510 PF00043 Glutathione S-transferase, C-terminal domain AL552_10510 PF02798 Glutathione S-transferase, N-terminal domain AL552_10515 PF04386 Stringent starvation protein B AL552_10520 PF04972 BON domain AL552_10525 PF13580 SIS domain AL552_10530 PF02021 Uncharacterised protein family UPF0102 AL552_10535 PF04348 LppC putative lipoprotein AL552_10540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL552_10555 PF01795 MraW methylase family AL552_10560 PF04999 Cell division protein FtsL AL552_10565 PF00905 Penicillin binding protein transpeptidase domain AL552_10565 PF03717 Penicillin-binding Protein dimerisation domain AL552_10570 PF01225 Mur ligase family, catalytic domain AL552_10570 PF02875 Mur ligase family, glutamate ligase domain AL552_10570 PF08245 Mur ligase middle domain AL552_10575 PF08245 Mur ligase middle domain AL552_10575 PF01225 Mur ligase family, catalytic domain AL552_10575 PF02875 Mur ligase family, glutamate ligase domain AL552_10580 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AL552_10580 PF00953 Glycosyl transferase family 4 AL552_10585 PF02875 Mur ligase family, glutamate ligase domain AL552_10585 PF08245 Mur ligase middle domain AL552_10590 PF01098 Cell cycle protein AL552_10595 PF04101 Glycosyltransferase family 28 C-terminal domain AL552_10595 PF03033 Glycosyltransferase family 28 N-terminal domain AL552_10600 PF01225 Mur ligase family, catalytic domain AL552_10600 PF02875 Mur ligase family, glutamate ligase domain AL552_10600 PF08245 Mur ligase middle domain AL552_10605 PF03799 Cell division protein FtsQ AL552_10605 PF08478 POTRA domain, FtsQ-type AL552_10610 PF02491 SHS2 domain inserted in FTSA AL552_10615 PF12327 FtsZ family, C-terminal domain AL552_10615 PF00091 Tubulin/FtsZ family, GTPase domain AL552_10620 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL552_10630 PF02810 SEC-C motif AL552_10630 PF07517 SecA DEAD-like domain AL552_10630 PF07516 SecA Wing and Scaffold domain AL552_10630 PF01043 SecA preprotein cross-linking domain AL552_10635 PF00293 NUDIX domain AL552_10640 PF05173 Dihydrodipicolinate reductase, C-terminus AL552_10640 PF01113 Dihydrodipicolinate reductase, N-terminus AL552_10645 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL552_10645 PF00117 Glutamine amidotransferase class-I AL552_10650 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL552_10650 PF02142 MGS-like domain AL552_10650 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL552_10670 PF01925 Sulfite exporter TauE/SafE AL552_10685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_10685 PF03466 LysR substrate binding domain AL552_10690 PF03458 UPF0126 domain AL552_10695 PF01497 Periplasmic binding protein AL552_10700 PF17113 Regulatory signalling modulator protein AmpE AL552_10700 PF03186 CobD/Cbib protein AL552_10705 PF01048 Phosphorylase superfamily AL552_10715 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL552_10715 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_10720 PF01645 Conserved region in glutamate synthase AL552_10720 PF00310 Glutamine amidotransferases class-II AL552_10720 PF04898 Glutamate synthase central domain AL552_10720 PF01493 GXGXG motif AL552_10725 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_10725 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL552_10730 PF00310 Glutamine amidotransferases class-II AL552_10730 PF01493 GXGXG motif AL552_10730 PF01645 Conserved region in glutamate synthase AL552_10730 PF04898 Glutamate synthase central domain AL552_10735 PF04055 Radical SAM superfamily AL552_10735 PF16199 Radical_SAM C-terminal domain AL552_10740 PF00990 Diguanylate cyclase, GGDEF domain AL552_10740 PF00563 EAL domain AL552_10740 PF01590 GAF domain AL552_10740 PF00360 Phytochrome region AL552_10745 PF00072 Response regulator receiver domain AL552_10745 PF00989 PAS fold AL552_10745 PF01627 Hpt domain AL552_10745 PF18415 Histidine kinase receptor ArcB trans-membrane domain AL552_10745 PF00512 His Kinase A (phospho-acceptor) domain AL552_10745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_10755 PF00486 Transcriptional regulatory protein, C terminal AL552_10755 PF00072 Response regulator receiver domain AL552_10770 PF03737 Aldolase/RraA AL552_10785 PF00742 Homoserine dehydrogenase AL552_10785 PF13840 ACT domain AL552_10785 PF01842 ACT domain AL552_10785 PF00696 Amino acid kinase family AL552_10785 PF03447 Homoserine dehydrogenase, NAD binding domain AL552_10790 PF08544 GHMP kinases C terminal AL552_10790 PF00288 GHMP kinases N terminal domain AL552_10795 PF14821 Threonine synthase N terminus AL552_10795 PF00291 Pyridoxal-phosphate dependent enzyme AL552_10805 PF01228 Glycine radical AL552_10810 PF01261 Xylose isomerase-like TIM barrel AL552_10820 PF03167 Uracil DNA glycosylase superfamily AL552_10835 PF01235 Sodium:alanine symporter family AL552_10840 PF03883 Peroxide stress protein YaaA AL552_10845 PF00270 DEAD/DEAH box helicase AL552_10845 PF00271 Helicase conserved C-terminal domain AL552_10850 PF05175 Methyltransferase small domain AL552_10855 PF05525 Branched-chain amino acid transport protein AL552_10860 PF00258 Flavodoxin AL552_10865 PF00589 Phage integrase family AL552_10865 PF02899 Phage integrase, N-terminal SAM-like domain AL552_10870 PF10411 Disulfide bond isomerase protein N-terminus AL552_10870 PF13098 Thioredoxin-like domain AL552_10885 PF00152 tRNA synthetases class II (D, K and N) AL552_10885 PF01336 OB-fold nucleic acid binding domain AL552_10890 PF00072 Response regulator receiver domain AL552_10890 PF02954 Bacterial regulatory protein, Fis family AL552_10890 PF00158 Sigma-54 interaction domain AL552_10900 PF00248 Aldo/keto reductase family AL552_10910 PF02976 DNA mismatch repair enzyme MutH AL552_10920 PF00293 NUDIX domain AL552_10925 PF00391 PEP-utilising enzyme, mobile domain AL552_10925 PF01590 GAF domain AL552_10925 PF05524 PEP-utilising enzyme, N-terminal AL552_10925 PF02896 PEP-utilising enzyme, TIM barrel domain AL552_10930 PF01925 Sulfite exporter TauE/SafE AL552_10940 PF00303 Thymidylate synthase AL552_10950 PF02690 Na+/Pi-cotransporter AL552_10955 PF03466 LysR substrate binding domain AL552_10955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_10960 PF01022 Bacterial regulatory protein, arsR family AL552_10965 PF01649 Ribosomal protein S20 AL552_10970 PF03023 Lipid II flippase MurJ AL552_10975 PF06574 FAD synthetase AL552_10975 PF01687 Riboflavin kinase AL552_10980 PF06827 Zinc finger found in FPG and IleRS AL552_10980 PF00133 tRNA synthetases class I (I, L, M and V) AL552_10980 PF08264 Anticodon-binding domain of tRNA AL552_10985 PF01252 Signal peptidase (SPase) II AL552_10990 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL552_10995 PF02401 LytB protein AL552_11005 PF04397 LytTr DNA-binding domain AL552_11005 PF00072 Response regulator receiver domain AL552_11010 PF07694 5TMR of 5TMR-LYT AL552_11010 PF06580 Histidine kinase AL552_11015 PF02554 Carbon starvation protein CstA AL552_11030 PF01380 SIS domain AL552_11035 PF03702 Anhydro-N-acetylmuramic acid kinase AL552_11040 PF00933 Glycosyl hydrolase family 3 N terminal domain AL552_11045 PF00793 DAHP synthetase I family AL552_11050 PF02153 Prephenate dehydrogenase AL552_11050 PF01817 Chorismate mutase type II AL552_11055 PF01464 Transglycosylase SLT domain AL552_11055 PF01551 Peptidase family M23 AL552_11055 PF10145 Phage-related minor tail protein AL552_11060 PF07238 PilZ domain AL552_11065 PF00005 ABC transporter AL552_11065 PF12848 ABC transporter AL552_11070 PF14718 Soluble lytic murein transglycosylase L domain AL552_11070 PF01464 Transglycosylase SLT domain AL552_11075 PF01371 Trp repressor protein AL552_11080 PF01931 Protein of unknown function DUF84 AL552_11085 PF00800 Prephenate dehydratase AL552_11085 PF01817 Chorismate mutase type II AL552_11090 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL552_11095 PF01464 Transglycosylase SLT domain AL552_11095 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL552_11100 PF13525 Outer membrane lipoprotein AL552_11105 PF01479 S4 domain AL552_11105 PF00849 RNA pseudouridylate synthase AL552_11115 PF07724 AAA domain (Cdc48 subfamily) AL552_11115 PF02861 Clp amino terminal domain, pathogenicity island component AL552_11115 PF17871 AAA lid domain AL552_11115 PF00004 ATPase family associated with various cellular activities (AAA) AL552_11115 PF10431 C-terminal, D2-small domain, of ClpB protein AL552_11165 PF03411 Penicillin-insensitive murein endopeptidase AL552_11175 PF00037 4Fe-4S binding domain AL552_11185 PF04381 Putative exonuclease, RdgC AL552_11195 PF00486 Transcriptional regulatory protein, C terminal AL552_11195 PF00072 Response regulator receiver domain AL552_11200 PF00989 PAS fold AL552_11200 PF00512 His Kinase A (phospho-acceptor) domain AL552_11200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_11200 PF11808 Phosphate regulon sensor protein PhoR AL552_11210 PF02541 Ppx/GppA phosphatase family AL552_11215 PF02503 Polyphosphate kinase middle domain AL552_11215 PF13090 Polyphosphate kinase C-terminal domain 2 AL552_11215 PF17941 Polyphosphate kinase C-terminal domain 1 AL552_11215 PF13089 Polyphosphate kinase N-terminal domain AL552_11220 PF00528 Binding-protein-dependent transport system inner membrane component AL552_11225 PF00528 Binding-protein-dependent transport system inner membrane component AL552_11230 PF00005 ABC transporter AL552_11235 PF01895 PhoU domain AL552_11240 PF03976 Polyphosphate kinase 2 (PPK2) AL552_11245 PF03932 CutC family AL552_11255 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL552_11255 PF00578 AhpC/TSA family AL552_11260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_11260 PF03466 LysR substrate binding domain AL552_11265 PF01274 Malate synthase AL552_11270 PF00463 Isocitrate lyase family AL552_11275 PF00571 CBS domain AL552_11290 PF02547 Queuosine biosynthesis protein AL552_11295 PF01702 Queuine tRNA-ribosyltransferase AL552_11300 PF02699 Preprotein translocase subunit AL552_11305 PF07549 SecD/SecF GG Motif AL552_11305 PF13721 SecD export protein N-terminal TM region AL552_11305 PF02355 Protein export membrane protein AL552_11310 PF02355 Protein export membrane protein AL552_11310 PF07549 SecD/SecF GG Motif AL552_11315 PF00459 Inositol monophosphatase family AL552_11325 PF02082 Transcriptional regulator AL552_11330 PF00266 Aminotransferase class-V AL552_11335 PF01592 NifU-like N terminal domain AL552_11340 PF01521 Iron-sulphur cluster biosynthesis AL552_11345 PF07743 HSCB C-terminal oligomerisation domain AL552_11345 PF00226 DnaJ domain AL552_11350 PF00012 Hsp70 protein AL552_11355 PF00111 2Fe-2S iron-sulfur cluster binding domain AL552_11360 PF04384 Iron-sulphur cluster assembly AL552_11365 PF00883 Cytosol aminopeptidase family, catalytic domain AL552_11365 PF12404 Peptidase AL552_11370 PF00334 Nucleoside diphosphate kinase AL552_11375 PF04055 Radical SAM superfamily AL552_11385 PF13464 Domain of unknown function (DUF4115) AL552_11390 PF04551 GcpE protein AL552_11395 PF03129 Anticodon binding domain AL552_11395 PF13393 Histidyl-tRNA synthetase AL552_11400 PF09976 Tetratricopeptide repeat-like domain AL552_11405 PF13360 PQQ-like domain AL552_11410 PF01926 50S ribosome-binding GTPase AL552_11410 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL552_11425 PF13742 OB-fold nucleic acid binding domain AL552_11425 PF02601 Exonuclease VII, large subunit AL552_11430 PF00571 CBS domain AL552_11430 PF00478 IMP dehydrogenase / GMP reductase domain AL552_11435 PF00958 GMP synthase C terminal domain AL552_11435 PF02540 NAD synthase AL552_11435 PF00117 Glutamine amidotransferase class-I AL552_11440 PF03553 Na+/H+ antiporter family AL552_11445 PF00704 Glycosyl hydrolases family 18 AL552_11445 PF06483 Chitinase C AL552_11450 PF01184 GPR1/FUN34/yaaH family AL552_11455 PF01235 Sodium:alanine symporter family AL552_11460 PF01266 FAD dependent oxidoreductase AL552_11470 PF07969 Amidohydrolase family AL552_11475 PF01053 Cys/Met metabolism PLP-dependent enzyme AL552_11480 PF00202 Aminotransferase class-III AL552_11500 PF00795 Carbon-nitrogen hydrolase AL552_11500 PF00583 Acetyltransferase (GNAT) family AL552_11505 PF03466 LysR substrate binding domain AL552_11505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_11530 PF01668 SmpB protein AL552_11535 PF03364 Polyketide cyclase / dehydrase and lipid transport AL552_11540 PF03658 RnfH family Ubiquitin AL552_11545 PF04355 SmpA / OmlA family AL552_11550 PF02463 RecF/RecN/SMC N terminal domain AL552_11560 PF01513 ATP-NAD kinase AL552_11565 PF01025 GrpE AL552_11570 PF00375 Sodium:dicarboxylate symporter family AL552_11575 PF00012 Hsp70 protein AL552_11580 PF00684 DnaJ central domain AL552_11580 PF00226 DnaJ domain AL552_11580 PF01556 DnaJ C terminal domain AL552_11585 PF07963 Prokaryotic N-terminal methylation motif AL552_11585 PF00114 Pilin (bacterial filament) AL552_11610 PF03806 AbgT putative transporter family AL552_11625 PF01464 Transglycosylase SLT domain AL552_11625 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL552_11630 PF02769 AIR synthase related protein, C-terminal domain AL552_11630 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL552_11630 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL552_11645 PF07715 TonB-dependent Receptor Plug Domain AL552_11645 PF00593 TonB dependent receptor AL552_11660 PF07687 Peptidase dimerisation domain AL552_11660 PF01546 Peptidase family M20/M25/M40 AL552_11665 PF00860 Permease family AL552_11670 PF00156 Phosphoribosyl transferase domain AL552_11680 PF07417 Sigma factor-binding transcriptional regulator Crl AL552_11685 PF00696 Amino acid kinase family AL552_11685 PF01472 PUA domain AL552_11690 PF00171 Aldehyde dehydrogenase family AL552_11695 PF03477 ATP cone domain AL552_11700 PF01872 RibD C-terminal domain AL552_11700 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL552_11705 PF00677 Lumazine binding domain AL552_11710 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL552_11710 PF00925 GTP cyclohydrolase II AL552_11715 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL552_11720 PF01029 NusB family AL552_11725 PF02769 AIR synthase related protein, C-terminal domain AL552_11725 PF00586 AIR synthase related protein, N-terminal domain AL552_11730 PF04608 Phosphatidylglycerophosphatase A AL552_11735 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL552_11735 PF02779 Transketolase, pyrimidine binding domain AL552_11735 PF02780 Transketolase, C-terminal domain AL552_11740 PF00348 Polyprenyl synthetase AL552_11745 PF02609 Exonuclease VII small subunit AL552_11750 PF01618 MotA/TolQ/ExbB proton channel family AL552_11755 PF00691 OmpA family AL552_11755 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL552_11760 PF02926 THUMP domain AL552_11760 PF02568 Thiamine biosynthesis protein (ThiI) AL552_11765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_11765 PF03466 LysR substrate binding domain AL552_11775 PF04241 Protein of unknown function (DUF423) AL552_11780 PF18125 RlmM ferredoxin-like domain AL552_11780 PF01728 FtsJ-like methyltransferase AL552_11785 PF01367 5'-3' exonuclease, C-terminal SAM fold AL552_11785 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL552_11790 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AL552_11790 PF11892 Domain of unknown function (DUF3412) AL552_11790 PF03641 Possible lysine decarboxylase AL552_11795 PF00563 EAL domain AL552_11795 PF03707 Bacterial signalling protein N terminal repeat AL552_11795 PF00990 Diguanylate cyclase, GGDEF domain AL552_11805 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL552_11805 PF14489 QueF-like protein AL552_11810 PF07348 Syd protein (SUKH-2) AL552_11815 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AL552_11820 PF03180 NLPA lipoprotein AL552_11825 PF00528 Binding-protein-dependent transport system inner membrane component AL552_11830 PF09383 NIL domain AL552_11830 PF00005 ABC transporter AL552_11840 PF00356 Bacterial regulatory proteins, lacI family AL552_11845 PF00367 phosphotransferase system, EIIB AL552_11845 PF02378 Phosphotransferase system, EIIC AL552_11850 PF00128 Alpha amylase, catalytic domain AL552_11850 PF16657 Maltogenic Amylase, C-terminal domain AL552_11865 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL552_11865 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AL552_11870 PF00464 Serine hydroxymethyltransferase AL552_11880 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL552_11880 PF04055 Radical SAM superfamily AL552_11885 PF03099 Biotin/lipoate A/B protein ligase family AL552_11890 PF04359 Protein of unknown function (DUF493) AL552_11895 PF07943 Penicillin-binding protein 5, C-terminal domain AL552_11895 PF00768 D-alanyl-D-alanine carboxypeptidase AL552_11900 PF05036 Sporulation related domain AL552_11900 PF03330 Lytic transglycolase AL552_11905 PF01098 Cell cycle protein AL552_11910 PF03717 Penicillin-binding Protein dimerisation domain AL552_11910 PF00905 Penicillin binding protein transpeptidase domain AL552_11915 PF02590 Predicted SPOUT methyltransferase AL552_11930 PF04390 Lipopolysaccharide-assembly AL552_11935 PF00133 tRNA synthetases class I (I, L, M and V) AL552_11935 PF13603 Leucyl-tRNA synthetase, Domain 2 AL552_11935 PF08264 Anticodon-binding domain of tRNA AL552_11940 PF07295 Zinc-ribbon containing domain AL552_11945 PF00795 Carbon-nitrogen hydrolase AL552_11950 PF00571 CBS domain AL552_11950 PF03471 Transporter associated domain AL552_11955 PF02130 Uncharacterized protein family UPF0054 AL552_11960 PF02562 PhoH-like protein AL552_11965 PF04055 Radical SAM superfamily AL552_11965 PF01938 TRAM domain AL552_11965 PF00919 Uncharacterized protein family UPF0004 AL552_11975 PF01494 FAD binding domain AL552_12085 PF01926 50S ribosome-binding GTPase AL552_12085 PF06071 Protein of unknown function (DUF933) AL552_12090 PF01195 Peptidyl-tRNA hydrolase AL552_12095 PF14572 Phosphoribosyl synthetase-associated domain AL552_12095 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL552_12100 PF00288 GHMP kinases N terminal domain AL552_12100 PF08544 GHMP kinases C terminal AL552_12105 PF03550 Outer membrane lipoprotein LolB AL552_12110 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL552_12110 PF01488 Shikimate / quinate 5-dehydrogenase AL552_12110 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL552_12115 PF00472 RF-1 domain AL552_12115 PF03462 PCRF domain AL552_12120 PF13847 Methyltransferase domain AL552_12120 PF17827 PrmC N-terminal domain AL552_12125 PF04247 Invasion gene expression up-regulator, SirB AL552_12130 PF13369 Transglutaminase-like superfamily AL552_12135 PF00793 DAHP synthetase I family AL552_12140 PF00149 Calcineurin-like phosphoesterase AL552_12140 PF02872 5'-nucleotidase, C-terminal domain AL552_12145 PF04073 Aminoacyl-tRNA editing domain AL552_12150 PF00849 RNA pseudouridylate synthase AL552_12150 PF01479 S4 domain AL552_12155 PF01713 Smr domain AL552_12180 PF00728 Glycosyl hydrolase family 20, catalytic domain AL552_12180 PF03173 Putative carbohydrate binding domain AL552_12180 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL552_12180 PF02838 Glycosyl hydrolase family 20, domain 2 AL552_12195 PF00403 Heavy-metal-associated domain AL552_12210 PF13609 Gram-negative porin AL552_12215 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL552_12220 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL552_12225 PF01389 OmpA-like transmembrane domain AL552_12225 PF00691 OmpA family AL552_12270 PF01584 CheW-like domain AL552_12270 PF00072 Response regulator receiver domain AL552_12275 PF01739 CheR methyltransferase, SAM binding domain AL552_12275 PF03705 CheR methyltransferase, all-alpha domain AL552_12280 PF00460 Flagella basal body rod protein AL552_12285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL552_12285 PF00460 Flagella basal body rod protein AL552_12290 PF13860 FlgD Ig-like domain AL552_12290 PF03963 Flagellar hook capping protein - N-terminal region AL552_12290 PF13861 FlgD Tudor-like domain AL552_12295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL552_12295 PF00460 Flagella basal body rod protein AL552_12295 PF07559 Flagellar basal body protein FlaE AL552_12300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL552_12300 PF00460 Flagella basal body rod protein AL552_12305 PF00460 Flagella basal body rod protein AL552_12305 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL552_12310 PF02107 Flagellar L-ring protein AL552_12315 PF02119 Flagellar P-ring protein AL552_12320 PF10135 Rod binding protein AL552_12320 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL552_12330 PF00669 Bacterial flagellin N-terminal helical region AL552_12335 PF00669 Bacterial flagellin N-terminal helical region AL552_12335 PF07196 Flagellin hook IN motif AL552_12335 PF00700 Bacterial flagellin C-terminal helical region AL552_12350 PF00700 Bacterial flagellin C-terminal helical region AL552_12350 PF07196 Flagellin hook IN motif AL552_12350 PF00669 Bacterial flagellin N-terminal helical region AL552_12355 PF00700 Bacterial flagellin C-terminal helical region AL552_12355 PF07196 Flagellin hook IN motif AL552_12355 PF00669 Bacterial flagellin N-terminal helical region AL552_12360 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL552_12365 PF02896 PEP-utilising enzyme, TIM barrel domain AL552_12365 PF00391 PEP-utilising enzyme, mobile domain AL552_12365 PF05524 PEP-utilising enzyme, N-terminal AL552_12370 PF00381 PTS HPr component phosphorylation site AL552_12380 PF00291 Pyridoxal-phosphate dependent enzyme AL552_12390 PF04354 ZipA, C-terminal FtsZ-binding domain AL552_12400 PF03573 outer membrane porin, OprD family AL552_12420 PF16200 C-terminal region of band_7 AL552_12420 PF01145 SPFH domain / Band 7 family AL552_12425 PF00085 Thioredoxin AL552_12435 PF00106 short chain dehydrogenase AL552_12440 PF08338 Domain of unknown function (DUF1731) AL552_12440 PF01370 NAD dependent epimerase/dehydratase family AL552_12445 PF07556 Protein of unknown function (DUF1538) AL552_12450 PF07556 Protein of unknown function (DUF1538) AL552_12470 PF12850 Calcineurin-like phosphoesterase superfamily domain AL552_12485 PF17323 Trans-membrane regulatory protein ToxS AL552_12490 PF00486 Transcriptional regulatory protein, C terminal AL552_12495 PF00183 Hsp90 protein AL552_12495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_12500 PF05191 Adenylate kinase, active site lid AL552_12505 PF00762 Ferrochelatase AL552_12510 PF00854 POT family AL552_12515 PF02357 Transcription termination factor nusG AL552_12520 PF13537 Glutamine amidotransferase domain AL552_12520 PF00733 Asparagine synthase AL552_12525 PF02254 TrkA-N domain AL552_12525 PF00999 Sodium/hydrogen exchanger family AL552_12530 PF00480 ROK family AL552_12530 PF01047 MarR family AL552_12535 PF01979 Amidohydrolase family AL552_12550 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL552_12550 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL552_12555 PF01475 Ferric uptake regulator family AL552_12565 PF00258 Flavodoxin AL552_12575 PF12697 Alpha/beta hydrolase family AL552_12580 PF17206 SeqA protein N-terminal domain AL552_12580 PF03925 SeqA protein C-terminal domain AL552_12585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL552_12585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL552_12585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL552_12585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL552_12595 PF01784 NIF3 (NGG1p interacting factor 3) AL552_12600 PF00285 Citrate synthase, C-terminal domain AL552_12605 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL552_12610 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL552_12615 PF00890 FAD binding domain AL552_12615 PF02910 Fumarate reductase flavoprotein C-term AL552_12620 PF13085 2Fe-2S iron-sulfur cluster binding domain AL552_12625 PF16078 2-oxoglutarate dehydrogenase N-terminus AL552_12625 PF02779 Transketolase, pyrimidine binding domain AL552_12625 PF16870 2-oxoglutarate dehydrogenase C-terminal AL552_12625 PF00676 Dehydrogenase E1 component AL552_12630 PF00364 Biotin-requiring enzyme AL552_12630 PF02817 e3 binding domain AL552_12630 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL552_12635 PF00549 CoA-ligase AL552_12635 PF08442 ATP-grasp domain AL552_12640 PF02629 CoA binding domain AL552_12640 PF00549 CoA-ligase AL552_12645 PF00950 ABC 3 transport family AL552_12655 PF01297 Zinc-uptake complex component A periplasmic AL552_12660 PF02311 AraC-like ligand binding domain AL552_12660 PF12833 Helix-turn-helix domain AL552_12670 PF04023 FeoA domain AL552_12675 PF17910 FeoB cytosolic helical domain AL552_12675 PF07670 Nucleoside recognition AL552_12675 PF02421 Ferrous iron transport protein B AL552_12675 PF07664 Ferrous iron transport protein B C terminus AL552_12690 PF00750 tRNA synthetases class I (R) AL552_12690 PF03485 Arginyl tRNA synthetase N terminal domain AL552_12690 PF05746 DALR anticodon binding domain AL552_12700 PF06185 YecM protein AL552_12705 PF00551 Formyl transferase AL552_12705 PF01842 ACT domain AL552_12715 PF00814 Glycoprotease family AL552_12730 PF00561 alpha/beta hydrolase fold AL552_12740 PF00570 HRDC domain AL552_12740 PF01612 3'-5' exonuclease AL552_12745 PF03776 Septum formation topological specificity factor MinE AL552_12750 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL552_12755 PF05209 Septum formation inhibitor MinC, N-terminal domain AL552_12755 PF03775 Septum formation inhibitor MinC, C-terminal domain AL552_12760 PF05166 YcgL domain AL552_12765 PF13406 Transglycosylase SLT domain AL552_12770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_12770 PF03466 LysR substrate binding domain AL552_12775 PF01773 Na+ dependent nucleoside transporter N-terminus AL552_12775 PF07662 Na+ dependent nucleoside transporter C-terminus AL552_12775 PF07670 Nucleoside recognition AL552_12780 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL552_12780 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL552_12790 PF01209 ubiE/COQ5 methyltransferase family AL552_12795 PF00109 Beta-ketoacyl synthase, N-terminal domain AL552_12795 PF02801 Beta-ketoacyl synthase, C-terminal domain AL552_12805 PF07977 FabA-like domain AL552_12810 PF02801 Beta-ketoacyl synthase, C-terminal domain AL552_12810 PF00109 Beta-ketoacyl synthase, N-terminal domain AL552_12835 PF00221 Aromatic amino acid lyase AL552_12840 PF00535 Glycosyl transferase family 2 AL552_12845 PF07977 FabA-like domain AL552_12860 PF00550 Phosphopantetheine attachment site AL552_12865 PF00550 Phosphopantetheine attachment site AL552_12890 PF04820 Tryptophan halogenase AL552_12900 PF01595 Cyclin M transmembrane N-terminal domain AL552_12900 PF03471 Transporter associated domain AL552_12900 PF00571 CBS domain AL552_12905 PF00271 Helicase conserved C-terminal domain AL552_12905 PF00270 DEAD/DEAH box helicase AL552_12910 PF02254 TrkA-N domain AL552_12910 PF02080 TrkA-C domain AL552_12915 PF02386 Cation transport protein AL552_12930 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL552_12935 PF03480 Bacterial extracellular solute-binding protein, family 7 AL552_12940 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL552_12945 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL552_12955 PF02954 Bacterial regulatory protein, Fis family AL552_12955 PF00158 Sigma-54 interaction domain AL552_12955 PF00072 Response regulator receiver domain AL552_12960 PF02743 Cache domain AL552_12960 PF00512 His Kinase A (phospho-acceptor) domain AL552_12960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_12970 PF05698 Bacterial trigger factor protein (TF) C-terminus AL552_12970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL552_12970 PF05697 Bacterial trigger factor protein (TF) AL552_12975 PF00574 Clp protease AL552_12980 PF07724 AAA domain (Cdc48 subfamily) AL552_12980 PF10431 C-terminal, D2-small domain, of ClpB protein AL552_12980 PF06689 ClpX C4-type zinc finger AL552_12985 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL552_12985 PF00004 ATPase family associated with various cellular activities (AAA) AL552_12985 PF05362 Lon protease (S16) C-terminal proteolytic domain AL552_12990 PF00216 Bacterial DNA-binding protein AL552_12995 PF13145 PPIC-type PPIASE domain AL552_13015 PF01966 HD domain AL552_13015 PF13286 Phosphohydrolase-associated domain AL552_13025 PF00155 Aminotransferase class I and II AL552_13030 PF00425 chorismate binding enzyme AL552_13035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL552_13035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL552_13035 PF16582 Middle domain of thiamine pyrophosphate AL552_13040 PF12697 Alpha/beta hydrolase family AL552_13045 PF00378 Enoyl-CoA hydratase/isomerase AL552_13050 PF13378 Enolase C-terminal domain-like AL552_13055 PF00501 AMP-binding enzyme AL552_13055 PF13193 AMP-binding enzyme C-terminal domain AL552_13065 PF03601 Conserved hypothetical protein 698 AL552_13070 PF07690 Major Facilitator Superfamily AL552_13120 PF00529 HlyD membrane-fusion protein of T1SS AL552_13120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL552_13125 PF00873 AcrB/AcrD/AcrF family AL552_13145 PF00291 Pyridoxal-phosphate dependent enzyme AL552_13150 PF13404 AsnC-type helix-turn-helix domain AL552_13150 PF01037 Lrp/AsnC ligand binding domain AL552_13165 PF09619 Type III secretion system lipoprotein chaperone (YscW) AL552_13170 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL552_13180 PF00072 Response regulator receiver domain AL552_13180 PF00990 Diguanylate cyclase, GGDEF domain AL552_13190 PF00588 SpoU rRNA Methylase family AL552_13190 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL552_13195 PF00571 CBS domain AL552_13195 PF00478 IMP dehydrogenase / GMP reductase domain AL552_13200 PF00403 Heavy-metal-associated domain AL552_13205 PF01048 Phosphorylase superfamily AL552_13215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_13215 PF00672 HAMP domain AL552_13225 PF01230 HIT domain AL552_13240 PF13036 Peptidoglycan-synthase activator LpoB AL552_13240 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL552_13245 PF01636 Phosphotransferase enzyme family AL552_13250 PF05728 Uncharacterised protein family (UPF0227) AL552_13255 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_13270 PF00270 DEAD/DEAH box helicase AL552_13270 PF00271 Helicase conserved C-terminal domain AL552_13270 PF03461 TRCF domain AL552_13270 PF17757 UvrB interaction domain AL552_13270 PF02559 CarD-like/TRCF domain AL552_13280 PF12704 MacB-like periplasmic core domain AL552_13280 PF02687 FtsX-like permease family AL552_13285 PF00005 ABC transporter AL552_13290 PF02687 FtsX-like permease family AL552_13290 PF12704 MacB-like periplasmic core domain AL552_13300 PF13567 Domain of unknown function (DUF4131) AL552_13300 PF00753 Metallo-beta-lactamase superfamily AL552_13300 PF03772 Competence protein AL552_13305 PF00005 ABC transporter AL552_13305 PF00664 ABC transporter transmembrane region AL552_13310 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AL552_13315 PF03966 Trm112p-like protein AL552_13320 PF02348 Cytidylyltransferase AL552_13325 PF04293 SpoVR like protein AL552_13330 PF04285 Protein of unknown function (DUF444) AL552_13335 PF08298 PrkA AAA domain AL552_13335 PF06798 PrkA serine protein kinase C-terminal domain AL552_13345 PF03887 YfbU domain AL552_13355 PF04055 Radical SAM superfamily AL552_13365 PF01228 Glycine radical AL552_13365 PF02901 Pyruvate formate lyase-like AL552_13385 PF00005 ABC transporter AL552_13390 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL552_13395 PF00528 Binding-protein-dependent transport system inner membrane component AL552_13400 PF00528 Binding-protein-dependent transport system inner membrane component AL552_13410 PF03372 Endonuclease/Exonuclease/phosphatase family AL552_13415 PF10689 Protein of unknown function (DUF2496) AL552_13420 PF07445 Primosomal replication protein priC AL552_13425 PF01925 Sulfite exporter TauE/SafE AL552_13440 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL552_13445 PF00849 RNA pseudouridylate synthase AL552_13450 PF03971 Monomeric isocitrate dehydrogenase AL552_13455 PF00313 'Cold-shock' DNA-binding domain AL552_13460 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL552_13465 PF17871 AAA lid domain AL552_13465 PF00004 ATPase family associated with various cellular activities (AAA) AL552_13465 PF10431 C-terminal, D2-small domain, of ClpB protein AL552_13465 PF07724 AAA domain (Cdc48 subfamily) AL552_13465 PF02861 Clp amino terminal domain, pathogenicity island component AL552_13470 PF01176 Translation initiation factor 1A / IF-1 AL552_13475 PF04376 Arginine-tRNA-protein transferase, N terminus AL552_13475 PF04377 Arginine-tRNA-protein transferase, C terminus AL552_13490 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL552_13495 PF10692 Protein of unknown function (DUF2498) AL552_13500 PF08272 Topoisomerase I zinc-ribbon-like AL552_13500 PF01131 DNA topoisomerase AL552_13500 PF01751 Toprim domain AL552_13500 PF01396 Topoisomerase DNA binding C4 zinc finger AL552_13505 PF00483 Nucleotidyl transferase AL552_13510 PF00534 Glycosyl transferases group 1 AL552_13510 PF08323 Starch synthase catalytic domain AL552_13530 PF04994 TfoX C-terminal domain AL552_13530 PF04993 TfoX N-terminal domain AL552_13535 PF00356 Bacterial regulatory proteins, lacI family AL552_13540 PF02613 Nitrate reductase delta subunit AL552_13545 PF00486 Transcriptional regulatory protein, C terminal AL552_13545 PF00072 Response regulator receiver domain AL552_13550 PF02698 DUF218 domain AL552_13560 PF17193 MukF C-terminal domain AL552_13560 PF03882 MukF winged-helix domain AL552_13560 PF17192 MukF middle domain AL552_13565 PF04288 MukE-like family AL552_13570 PF16330 MukB hinge domain AL552_13570 PF04310 MukB N-terminal AL552_13590 PF08443 RimK-like ATP-grasp domain AL552_13590 PF18030 RimK PreATP-grasp domain AL552_13600 PF08003 Protein of unknown function (DUF1698) AL552_13605 PF13649 Methyltransferase domain AL552_13610 PF01904 Protein of unknown function DUF72 AL552_13615 PF02938 GAD domain AL552_13615 PF01336 OB-fold nucleic acid binding domain AL552_13615 PF00152 tRNA synthetases class II (D, K and N) AL552_13620 PF01709 Transcriptional regulator AL552_13625 PF02075 Crossover junction endodeoxyribonuclease RuvC AL552_13630 PF01330 RuvA N terminal domain AL552_13630 PF07499 RuvA, C-terminal domain AL552_13635 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL552_13635 PF17864 RuvB AAA lid domain AL552_13635 PF05491 RuvB C-terminal winged helix domain AL552_13640 PF01654 Cytochrome bd terminal oxidase subunit I AL552_13645 PF02322 Cytochrome bd terminal oxidase subunit II AL552_13650 PF08173 Membrane bound YbgT-like protein AL552_13660 PF03061 Thioesterase superfamily AL552_13665 PF01618 MotA/TolQ/ExbB proton channel family AL552_13670 PF02472 Biopolymer transport protein ExbD/TolR AL552_13680 PF04052 TolB amino-terminal domain AL552_13680 PF07676 WD40-like Beta Propeller Repeat AL552_13685 PF00691 OmpA family AL552_13690 PF13174 Tetratricopeptide repeat AL552_13690 PF16331 TolA binding protein trimerisation AL552_13695 PF02445 Quinolinate synthetase A protein AL552_13705 PF03994 Domain of Unknown Function (DUF350) AL552_13725 PF00072 Response regulator receiver domain AL552_13725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_13725 PF00512 His Kinase A (phospho-acceptor) domain AL552_13725 PF09308 LuxQ, periplasmic AL552_13730 PF06610 L-alanine exporter AL552_13740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_13740 PF00672 HAMP domain AL552_13740 PF02743 Cache domain AL552_13745 PF00529 HlyD membrane-fusion protein of T1SS AL552_13745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL552_13750 PF00873 AcrB/AcrD/AcrF family AL552_13765 PF00579 tRNA synthetases class I (W and Y) AL552_13775 PF03372 Endonuclease/Exonuclease/phosphatase family AL552_13785 PF00672 HAMP domain AL552_13785 PF17200 Single Cache domain 2 AL552_13785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_13790 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AL552_13800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_13800 PF03466 LysR substrate binding domain AL552_13810 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL552_13810 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL552_13815 PF01037 Lrp/AsnC ligand binding domain AL552_13820 PF01580 FtsK/SpoIIIE family AL552_13820 PF09397 Ftsk gamma domain AL552_13820 PF17854 FtsK alpha domain AL552_13820 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL552_13825 PF03548 Outer membrane lipoprotein carrier protein LolA AL552_13830 PF00004 ATPase family associated with various cellular activities (AAA) AL552_13830 PF16193 AAA C-terminal domain AL552_13830 PF12002 MgsA AAA+ ATPase C terminal AL552_13835 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL552_13835 PF02403 Seryl-tRNA synthetase N-terminal domain AL552_13855 PF06968 Biotin and Thiamin Synthesis associated domain AL552_13855 PF04055 Radical SAM superfamily AL552_13860 PF00155 Aminotransferase class I and II AL552_13865 PF12697 Alpha/beta hydrolase family AL552_13865 PF08241 Methyltransferase domain AL552_13880 PF01435 Peptidase family M48 AL552_13890 PF00106 short chain dehydrogenase AL552_13915 PF16036 Chalcone isomerase-like AL552_13925 PF08328 Adenylosuccinate lyase C-terminal AL552_13925 PF00206 Lyase AL552_13930 PF04356 Protein of unknown function (DUF489) AL552_13945 PF00294 pfkB family carbohydrate kinase AL552_13950 PF00816 H-NS histone family AL552_13955 PF03553 Na+/H+ antiporter family AL552_13960 PF00072 Response regulator receiver domain AL552_13960 PF02954 Bacterial regulatory protein, Fis family AL552_13960 PF00158 Sigma-54 interaction domain AL552_13965 PF01634 ATP phosphoribosyltransferase AL552_13965 PF08029 HisG, C-terminal domain AL552_13970 PF00815 Histidinol dehydrogenase AL552_13975 PF00155 Aminotransferase class I and II AL552_13980 PF00475 Imidazoleglycerol-phosphate dehydratase AL552_13980 PF08645 Polynucleotide kinase 3 phosphatase AL552_13985 PF00117 Glutamine amidotransferase class-I AL552_13990 PF00977 Histidine biosynthesis protein AL552_13995 PF00977 Histidine biosynthesis protein AL552_14000 PF01502 Phosphoribosyl-AMP cyclohydrolase AL552_14000 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL552_14005 PF02810 SEC-C motif AL552_14010 PF00563 EAL domain AL552_14010 PF08668 HDOD domain AL552_14015 PF00149 Calcineurin-like phosphoesterase AL552_14020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL552_14025 PF09190 DALR domain AL552_14025 PF01406 tRNA synthetases class I (C) catalytic domain AL552_14030 PF00265 Thymidine kinase AL552_14035 PF02698 DUF218 domain AL552_14060 PF01226 Formate/nitrite transporter AL552_14070 PF03649 Uncharacterised protein family (UPF0014) AL552_14075 PF06796 Periplasmic nitrate reductase protein NapE AL552_14080 PF03264 NapC/NirT cytochrome c family, N-terminal region AL552_14085 PF01568 Molydopterin dinucleotide binding domain AL552_14085 PF00384 Molybdopterin oxidoreductase AL552_14085 PF18364 Molybdopterin oxidoreductase N-terminal domain AL552_14090 PF16875 Glycosyl hydrolase family 36 N-terminal domain AL552_14090 PF16874 Glycosyl hydrolase family 36 C-terminal domain AL552_14100 PF01368 DHH family AL552_14100 PF02833 DHHA2 domain AL552_14110 PF00005 ABC transporter AL552_14115 PF00005 ABC transporter AL552_14115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL552_14120 PF12911 N-terminal TM domain of oligopeptide transport permease C AL552_14120 PF00528 Binding-protein-dependent transport system inner membrane component AL552_14125 PF00528 Binding-protein-dependent transport system inner membrane component AL552_14130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL552_14135 PF00158 Sigma-54 interaction domain AL552_14135 PF02954 Bacterial regulatory protein, Fis family AL552_14140 PF04012 PspA/IM30 family AL552_14145 PF06667 Phage shock protein B AL552_14150 PF04024 PspC domain AL552_14160 PF13533 Biotin-lipoyl like AL552_14165 PF00873 AcrB/AcrD/AcrF family AL552_14170 PF03352 Methyladenine glycosylase AL552_14175 PF03280 Proteobacterial lipase chaperone protein AL552_14180 PF00561 alpha/beta hydrolase fold AL552_14185 PF01053 Cys/Met metabolism PLP-dependent enzyme AL552_14190 PF13396 Phospholipase_D-nuclease N-terminal AL552_14190 PF13091 PLD-like domain AL552_14195 PF00209 Sodium:neurotransmitter symporter family AL552_14200 PF00849 RNA pseudouridylate synthase AL552_14210 PF00175 Oxidoreductase NAD-binding domain AL552_14210 PF00111 2Fe-2S iron-sulfur cluster binding domain AL552_14210 PF00970 Oxidoreductase FAD-binding domain AL552_14215 PF03063 Prismane/CO dehydrogenase family AL552_14220 PF01590 GAF domain AL552_14220 PF00158 Sigma-54 interaction domain AL552_14235 PF01066 CDP-alcohol phosphatidyltransferase AL552_14240 PF00005 ABC transporter AL552_14245 PF00528 Binding-protein-dependent transport system inner membrane component AL552_14250 PF13416 Bacterial extracellular solute-binding protein AL552_14260 PF06945 Protein of unknown function (DUF1289) AL552_14270 PF00149 Calcineurin-like phosphoesterase AL552_14270 PF02872 5'-nucleotidase, C-terminal domain AL552_14275 PF00583 Acetyltransferase (GNAT) family AL552_14280 PF01386 Ribosomal L25p family AL552_14290 PF00512 His Kinase A (phospho-acceptor) domain AL552_14290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_14290 PF00672 HAMP domain AL552_14295 PF00486 Transcriptional regulatory protein, C terminal AL552_14295 PF00072 Response regulator receiver domain AL552_14305 PF04851 Type III restriction enzyme, res subunit AL552_14305 PF00271 Helicase conserved C-terminal domain AL552_14310 PF00849 RNA pseudouridylate synthase AL552_14310 PF01479 S4 domain AL552_14320 PF07690 Major Facilitator Superfamily AL552_14335 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) AL552_14350 PF03264 NapC/NirT cytochrome c family, N-terminal region AL552_14355 PF11066 Protein of unknown function (DUF2867) AL552_14355 PF13460 NAD(P)H-binding AL552_14360 PF01554 MatE AL552_14365 PF00005 ABC transporter AL552_14380 PF06965 Na+/H+ antiporter 1 AL552_14385 PF00440 Bacterial regulatory proteins, tetR family AL552_14385 PF16295 Tetracyclin repressor-like, C-terminal domain AL552_14390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL552_14390 PF09317 Domain of unknown function (DUF1974) AL552_14390 PF02770 Acyl-CoA dehydrogenase, middle domain AL552_14390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL552_14395 PF07055 Enoyl reductase FAD binding domain AL552_14395 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL552_14395 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL552_14400 PF02080 TrkA-C domain AL552_14400 PF06826 Predicted Permease Membrane Region AL552_14405 PF00462 Glutaredoxin AL552_14420 PF00465 Iron-containing alcohol dehydrogenase AL552_14425 PF01380 SIS domain AL552_14425 PF01418 Helix-turn-helix domain, rpiR family AL552_14430 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL552_14440 PF03956 Lysine exporter LysO AL552_14455 PF04993 TfoX N-terminal domain AL552_14455 PF04994 TfoX C-terminal domain AL552_14470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_14470 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL552_14470 PF00512 His Kinase A (phospho-acceptor) domain AL552_14480 PF00266 Aminotransferase class-V AL552_14485 PF00291 Pyridoxal-phosphate dependent enzyme AL552_14490 PF00005 ABC transporter AL552_14490 PF00664 ABC transporter transmembrane region AL552_14495 PF00664 ABC transporter transmembrane region AL552_14495 PF00005 ABC transporter AL552_14500 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_14510 PF00266 Aminotransferase class-V AL552_14525 PF00939 Sodium:sulfate symporter transmembrane region AL552_14530 PF02698 DUF218 domain AL552_14535 PF00390 Malic enzyme, N-terminal domain AL552_14535 PF03949 Malic enzyme, NAD binding domain AL552_14550 PF09423 PhoD-like phosphatase AL552_14550 PF16655 PhoD-like phosphatase, N-terminal domain AL552_14555 PF01259 SAICAR synthetase AL552_14575 PF05736 OprF membrane domain AL552_14575 PF00691 OmpA family AL552_14590 PF01565 FAD binding domain AL552_14590 PF13183 4Fe-4S dicluster domain AL552_14590 PF02913 FAD linked oxidases, C-terminal domain AL552_14595 PF04191 Phospholipid methyltransferase AL552_14605 PF00221 Aromatic amino acid lyase AL552_14610 PF01175 Urocanase Rossmann-like domain AL552_14610 PF17392 Urocanase C-terminal domain AL552_14610 PF17391 Urocanase N-terminal domain AL552_14615 PF00491 Arginase family AL552_14620 PF01979 Amidohydrolase family AL552_14625 PF07702 UTRA domain AL552_14625 PF00392 Bacterial regulatory proteins, gntR family AL552_14640 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL552_14640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL552_14640 PF02824 TGS domain AL552_14640 PF03129 Anticodon binding domain AL552_14650 PF01632 Ribosomal protein L35 AL552_14655 PF00453 Ribosomal protein L20 AL552_14660 PF01906 Putative heavy-metal-binding AL552_14690 PF01409 tRNA synthetases class II core domain (F) AL552_14690 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL552_14695 PF03147 Ferredoxin-fold anticodon binding domain AL552_14695 PF03484 tRNA synthetase B5 domain AL552_14695 PF03483 B3/4 domain AL552_14695 PF01588 Putative tRNA binding domain AL552_14695 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL552_14705 PF00216 Bacterial DNA-binding protein AL552_14715 PF05724 Thiopurine S-methyltransferase (TPMT) AL552_14720 PF02222 ATP-grasp domain AL552_14725 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL552_14725 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AL552_14730 PF04172 LrgB-like family AL552_14735 PF03788 LrgA family AL552_14740 PF08411 Exonuclease C-terminal AL552_14740 PF00929 Exonuclease AL552_14750 PF13460 NAD(P)H-binding AL552_14755 PF02277 Phosphoribosyltransferase AL552_14760 PF02654 Cobalamin-5-phosphate synthase AL552_14765 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AL552_14780 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL552_14785 PF01032 FecCD transport family AL552_14790 PF00005 ABC transporter AL552_14810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_14810 PF03466 LysR substrate binding domain AL552_14820 PF01863 Protein of unknown function DUF45 AL552_14825 PF05971 RNA methyltransferase AL552_14845 PF00392 Bacterial regulatory proteins, gntR family AL552_14850 PF00171 Aldehyde dehydrogenase family AL552_14855 PF05544 Proline racemase AL552_14860 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL552_14860 PF01266 FAD dependent oxidoreductase AL552_14870 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL552_14875 PF00701 Dihydrodipicolinate synthetase family AL552_14880 PF08402 TOBE domain AL552_14880 PF00005 ABC transporter AL552_14890 PF00528 Binding-protein-dependent transport system inner membrane component AL552_14900 PF01752 Collagenase AL552_14900 PF08453 Peptidase family M9 N-terminal AL552_14910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL552_14910 PF00005 ABC transporter AL552_14915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL552_14915 PF00005 ABC transporter AL552_14920 PF00528 Binding-protein-dependent transport system inner membrane component AL552_14920 PF12911 N-terminal TM domain of oligopeptide transport permease C AL552_14925 PF00528 Binding-protein-dependent transport system inner membrane component AL552_14935 PF07687 Peptidase dimerisation domain AL552_14935 PF01546 Peptidase family M20/M25/M40 AL552_14940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL552_14945 PF04209 homogentisate 1,2-dioxygenase AL552_14955 PF02798 Glutathione S-transferase, N-terminal domain AL552_14955 PF14497 Glutathione S-transferase, C-terminal domain AL552_14990 PF12792 CSS motif domain associated with EAL AL552_14990 PF00563 EAL domain AL552_15000 PF01047 MarR family AL552_15005 PF04237 YjbR AL552_15020 PF12464 Maltose acetyltransferase AL552_15020 PF00132 Bacterial transferase hexapeptide (six repeats) AL552_15035 PF00072 Response regulator receiver domain AL552_15035 PF00512 His Kinase A (phospho-acceptor) domain AL552_15035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_15035 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL552_15035 PF01627 Hpt domain AL552_15035 PF00672 HAMP domain AL552_15040 PF03707 Bacterial signalling protein N terminal repeat AL552_15040 PF00990 Diguanylate cyclase, GGDEF domain AL552_15040 PF00563 EAL domain AL552_15055 PF04204 Homoserine O-succinyltransferase AL552_15065 PF00893 Small Multidrug Resistance protein AL552_15070 PF13520 Amino acid permease AL552_15075 PF03279 Bacterial lipid A biosynthesis acyltransferase AL552_15080 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL552_15085 PF01810 LysE type translocator AL552_15095 PF01235 Sodium:alanine symporter family AL552_15125 PF00884 Sulfatase AL552_15130 PF08521 Two-component sensor kinase N-terminal AL552_15130 PF00512 His Kinase A (phospho-acceptor) domain AL552_15130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_15135 PF00486 Transcriptional regulatory protein, C terminal AL552_15135 PF00072 Response regulator receiver domain AL552_15155 PF00501 AMP-binding enzyme AL552_15165 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL552_15170 PF00528 Binding-protein-dependent transport system inner membrane component AL552_15175 PF00005 ABC transporter AL552_15175 PF00571 CBS domain AL552_15190 PF02028 BCCT, betaine/carnitine/choline family transporter AL552_15195 PF00583 Acetyltransferase (GNAT) family AL552_15200 PF00202 Aminotransferase class-III AL552_15205 PF06339 Ectoine synthase AL552_15210 PF00696 Amino acid kinase family AL552_15210 PF13840 ACT domain AL552_15230 PF13533 Biotin-lipoyl like AL552_15245 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL552_15245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_15245 PF17203 Single cache domain 3 AL552_15245 PF00989 PAS fold AL552_15250 PF00072 Response regulator receiver domain AL552_15250 PF12431 Transcriptional regulator AL552_15255 PF07715 TonB-dependent Receptor Plug Domain AL552_15255 PF00593 TonB dependent receptor AL552_15260 PF12833 Helix-turn-helix domain AL552_15265 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AL552_15265 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AL552_15270 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL552_15275 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL552_15275 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL552_15300 PF02954 Bacterial regulatory protein, Fis family AL552_15300 PF01590 GAF domain AL552_15300 PF00158 Sigma-54 interaction domain AL552_15305 PF00171 Aldehyde dehydrogenase family AL552_15325 PF12833 Helix-turn-helix domain AL552_15345 PF16697 Inner membrane component of T3SS, cytoplasmic domain AL552_15345 PF16693 Inner membrane component of T3SS, periplasmic domain AL552_15355 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF AL552_15360 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) AL552_15370 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI AL552_15375 PF01514 Secretory protein of YscJ/FliF family AL552_15385 PF02108 Flagellar assembly protein FliH AL552_15395 PF02661 Fic/DOC family AL552_15445 PF00440 Bacterial regulatory proteins, tetR family AL552_15445 PF08360 QacR-like protein, C-terminal region AL552_15450 PF01312 FlhB HrpN YscU SpaS Family AL552_15455 PF01311 Bacterial export proteins, family 1 AL552_15460 PF01313 Bacterial export proteins, family 3 AL552_15465 PF00813 FliP family AL552_15485 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL552_15485 PF18269 T3SS EscN ATPase C-terminal domain AL552_15485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL552_15495 PF09059 TyeA AL552_15515 PF00771 FHIPEP family AL552_15520 PF09621 Type III secretion system regulator (LcrR) AL552_15530 PF04792 V antigen (LcrV) protein AL552_15535 PF07720 Tetratricopeptide repeat AL552_15545 PF05844 YopD protein AL552_15555 PF16868 NMT1-like family AL552_15560 PF01925 Sulfite exporter TauE/SafE AL552_15570 PF01970 Tripartite tricarboxylate transporter TctA family AL552_15600 PF00285 Citrate synthase, C-terminal domain AL552_15605 PF00694 Aconitase C-terminal domain AL552_15605 PF00330 Aconitase family (aconitate hydratase) AL552_15610 PF04303 PrpF protein AL552_15615 PF13193 AMP-binding enzyme C-terminal domain AL552_15615 PF00501 AMP-binding enzyme AL552_15615 PF16177 Acetyl-coenzyme A synthetase N-terminus AL552_15625 PF00089 Trypsin AL552_15640 PF04055 Radical SAM superfamily AL552_15645 PF06508 Queuosine biosynthesis protein QueC AL552_15650 PF00990 Diguanylate cyclase, GGDEF domain AL552_15650 PF07694 5TMR of 5TMR-LYT AL552_15660 PF00691 OmpA family AL552_15660 PF05736 OprF membrane domain AL552_15685 PF00691 OmpA family AL552_15685 PF05736 OprF membrane domain AL552_15700 PF17785 PUA-like domain AL552_15700 PF10672 S-adenosylmethionine-dependent methyltransferase AL552_15705 PF00672 HAMP domain AL552_15705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_15705 PF02743 Cache domain AL552_15710 PF00708 Acylphosphatase AL552_15715 PF04358 DsrC like protein AL552_15730 PF01027 Inhibitor of apoptosis-promoting Bax1 AL552_15735 PF00005 ABC transporter AL552_15740 PF00528 Binding-protein-dependent transport system inner membrane component AL552_15745 PF00528 Binding-protein-dependent transport system inner membrane component AL552_15750 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL552_15760 PF10414 Sirohaem synthase dimerisation region AL552_15760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL552_15760 PF14824 Sirohaem biosynthesis protein central AL552_15765 PF04461 Protein of unknown function (DUF520) AL552_15770 PF00793 DAHP synthetase I family AL552_15790 PF01189 16S rRNA methyltransferase RsmB/F AL552_15790 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AL552_15790 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AL552_15795 PF02470 MlaD protein AL552_15800 PF04403 Paraquat-inducible protein A AL552_15805 PF00664 ABC transporter transmembrane region AL552_15805 PF00005 ABC transporter AL552_15810 PF13185 GAF domain AL552_15815 PF04352 ProQ/FINO family AL552_15815 PF17516 ProQ C-terminal domain AL552_15820 PF00595 PDZ domain AL552_15820 PF11818 C-terminal domain of tail specific protease (DUF3340) AL552_15820 PF17804 Tail specific protease N-terminal domain AL552_15820 PF03572 Peptidase family S41 AL552_15830 PF01433 Peptidase family M1 domain AL552_15830 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL552_15830 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL552_15845 PF01180 Dihydroorotate dehydrogenase AL552_15855 PF01170 Putative RNA methylase family UPF0020 AL552_15855 PF02926 THUMP domain AL552_15855 PF10672 S-adenosylmethionine-dependent methyltransferase AL552_15875 PF04957 Ribosome modulation factor AL552_15880 PF07977 FabA-like domain AL552_15885 PF05362 Lon protease (S16) C-terminal proteolytic domain AL552_15885 PF13654 AAA domain AL552_15890 PF17414 MatP C-terminal ribbon-helix-helix domain AL552_15890 PF06303 MatP N-terminal domain AL552_15910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_15910 PF00512 His Kinase A (phospho-acceptor) domain AL552_15910 PF09308 LuxQ, periplasmic AL552_15910 PF00072 Response regulator receiver domain AL552_15925 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL552_15940 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL552_15940 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL552_15950 PF00403 Heavy-metal-associated domain AL552_15965 PF13545 Crp-like helix-turn-helix domain AL552_15965 PF00027 Cyclic nucleotide-binding domain AL552_15970 PF00582 Universal stress protein family AL552_15975 PF01171 PP-loop family AL552_15995 PF00005 ABC transporter AL552_15995 PF08402 TOBE domain AL552_16000 PF00528 Binding-protein-dependent transport system inner membrane component AL552_16005 PF00528 Binding-protein-dependent transport system inner membrane component AL552_16010 PF13416 Bacterial extracellular solute-binding protein AL552_16015 PF13416 Bacterial extracellular solute-binding protein AL552_16020 PF02146 Sir2 family AL552_16025 PF00909 Ammonium Transporter Family AL552_16185 PF13247 4Fe-4S dicluster domain AL552_16190 PF00384 Molybdopterin oxidoreductase AL552_16190 PF01568 Molydopterin dinucleotide binding domain AL552_16190 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL552_16200 PF02613 Nitrate reductase delta subunit AL552_16220 PF02634 FdhD/NarQ family AL552_16225 PF00005 ABC transporter AL552_16225 PF12848 ABC transporter AL552_16235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_16235 PF00512 His Kinase A (phospho-acceptor) domain AL552_16240 PF00072 Response regulator receiver domain AL552_16240 PF02954 Bacterial regulatory protein, Fis family AL552_16240 PF00158 Sigma-54 interaction domain AL552_16245 PF12849 PBP superfamily domain AL552_16250 PF00528 Binding-protein-dependent transport system inner membrane component AL552_16255 PF00005 ABC transporter AL552_16255 PF08402 TOBE domain AL552_16260 PF12804 MobA-like NTP transferase domain AL552_16265 PF03453 MoeA N-terminal region (domain I and II) AL552_16265 PF03454 MoeA C-terminal region (domain IV) AL552_16265 PF00994 Probable molybdopterin binding domain AL552_16275 PF00480 ROK family AL552_16310 PF02743 Cache domain AL552_16310 PF00672 HAMP domain AL552_16310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_16315 PF00877 NlpC/P60 family AL552_16325 PF00990 Diguanylate cyclase, GGDEF domain AL552_16325 PF05230 MASE2 domain AL552_16330 PF00072 Response regulator receiver domain AL552_16330 PF01339 CheB methylesterase AL552_16345 PF00677 Lumazine binding domain AL552_16350 PF01554 MatE AL552_16360 PF01068 ATP dependent DNA ligase domain AL552_16360 PF14743 DNA ligase OB-like domain AL552_16365 PF01740 STAS domain AL552_16375 PF10531 SLBB domain AL552_16375 PF02563 Polysaccharide biosynthesis/export protein AL552_16395 PF00534 Glycosyl transferases group 1 AL552_16395 PF13439 Glycosyltransferase Family 4 AL552_16400 PF13439 Glycosyltransferase Family 4 AL552_16400 PF00534 Glycosyl transferases group 1 AL552_16430 PF00534 Glycosyl transferases group 1 AL552_16430 PF13439 Glycosyltransferase Family 4 AL552_16440 PF02397 Bacterial sugar transferase AL552_16450 PF02028 BCCT, betaine/carnitine/choline family transporter AL552_16465 PF11898 Domain of unknown function (DUF3418) AL552_16465 PF04408 Helicase associated domain (HA2) AL552_16465 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL552_16465 PF00270 DEAD/DEAH box helicase AL552_16465 PF00271 Helicase conserved C-terminal domain AL552_16470 PF02525 Flavodoxin-like fold AL552_16505 PF00990 Diguanylate cyclase, GGDEF domain AL552_16515 PF00012 Hsp70 protein AL552_16520 PF00012 Hsp70 protein AL552_16540 PF14245 Type IV pilin PilA AL552_16540 PF07963 Prokaryotic N-terminal methylation motif AL552_16545 PF00005 ABC transporter AL552_16545 PF00664 ABC transporter transmembrane region AL552_16550 PF00005 ABC transporter AL552_16550 PF00664 ABC transporter transmembrane region AL552_16560 PF07715 TonB-dependent Receptor Plug Domain AL552_16560 PF00593 TonB dependent receptor AL552_16565 PF01032 FecCD transport family AL552_16570 PF01497 Periplasmic binding protein AL552_16575 PF00005 ABC transporter AL552_16590 PF03222 Tryptophan/tyrosine permease family AL552_16595 PF00465 Iron-containing alcohol dehydrogenase AL552_16600 PF01966 HD domain AL552_16610 PF03741 Integral membrane protein TerC family AL552_16620 PF04055 Radical SAM superfamily AL552_16625 PF11230 Protein of unknown function (DUF3029) AL552_16630 PF01810 LysE type translocator AL552_16635 PF01966 HD domain AL552_16635 PF11871 Domain of unknown function (DUF3391) AL552_16645 PF02954 Bacterial regulatory protein, Fis family AL552_16645 PF00072 Response regulator receiver domain AL552_16645 PF00158 Sigma-54 interaction domain AL552_16650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_16650 PF00512 His Kinase A (phospho-acceptor) domain AL552_16675 PF00072 Response regulator receiver domain AL552_16675 PF00990 Diguanylate cyclase, GGDEF domain AL552_16680 PF03928 Haem-degrading AL552_16685 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL552_16685 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL552_16690 PF08220 DeoR-like helix-turn-helix domain AL552_16690 PF00455 DeoR C terminal sensor domain AL552_16705 PF04055 Radical SAM superfamily AL552_16705 PF13186 Iron-sulfur cluster-binding domain AL552_16710 PF03781 Sulfatase-modifying factor enzyme 1 AL552_16720 PF00884 Sulfatase AL552_16725 PF13533 Biotin-lipoyl like AL552_16735 PF03466 LysR substrate binding domain AL552_16735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_16745 PF13533 Biotin-lipoyl like AL552_16760 PF01810 LysE type translocator AL552_16770 PF07237 Protein of unknown function (DUF1428) AL552_16815 PF13333 Integrase core domain AL552_16815 PF13276 HTH-like domain AL552_16815 PF00665 Integrase core domain AL552_17200 PF00293 NUDIX domain AL552_17315 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL552_17490 PF00293 NUDIX domain AL552_17570 PF04463 Protein of unknown function (DUF523) AL552_17580 PF13676 TIR domain AL552_18035 PF13495 Phage integrase, N-terminal SAM-like domain AL552_18035 PF00589 Phage integrase family AL552_18050 PF13302 Acetyltransferase (GNAT) domain AL552_18055 PF18024 Helix-turn-helix domain AL552_18055 PF00158 Sigma-54 interaction domain AL552_18060 PF05128 Domain of unknown function (DUF697) AL552_18065 PF04317 YcjX-like family, DUF463 AL552_18085 PF04715 Anthranilate synthase component I, N terminal region AL552_18085 PF00425 chorismate binding enzyme AL552_18090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_18090 PF09308 LuxQ, periplasmic AL552_18090 PF00072 Response regulator receiver domain AL552_18090 PF00512 His Kinase A (phospho-acceptor) domain AL552_18100 PF00293 NUDIX domain AL552_18105 PF03222 Tryptophan/tyrosine permease family AL552_18110 PF03315 Serine dehydratase beta chain AL552_18110 PF03313 Serine dehydratase alpha chain AL552_18115 PF04940 Sensors of blue-light using FAD AL552_18115 PF00563 EAL domain AL552_18125 PF01242 6-pyruvoyl tetrahydropterin synthase AL552_18130 PF00672 HAMP domain AL552_18130 PF17200 Single Cache domain 2 AL552_18130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_18135 PF00152 tRNA synthetases class II (D, K and N) AL552_18135 PF01336 OB-fold nucleic acid binding domain AL552_18145 PF00155 Aminotransferase class I and II AL552_18145 PF00392 Bacterial regulatory proteins, gntR family AL552_18160 PF00155 Aminotransferase class I and II AL552_18180 PF00672 HAMP domain AL552_18180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_18185 PF02028 BCCT, betaine/carnitine/choline family transporter AL552_18195 PF00072 Response regulator receiver domain AL552_18195 PF00196 Bacterial regulatory proteins, luxR family AL552_18200 PF07730 Histidine kinase AL552_18200 PF17200 Single Cache domain 2 AL552_18205 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL552_18215 PF03480 Bacterial extracellular solute-binding protein, family 7 AL552_18230 PF00753 Metallo-beta-lactamase superfamily AL552_18235 PF05951 Bacterial protein of unknown function (DUF882) AL552_18240 PF01471 Putative peptidoglycan binding domain AL552_18240 PF03734 L,D-transpeptidase catalytic domain AL552_18265 PF00925 GTP cyclohydrolase II AL552_18275 PF03918 Cytochrome C biogenesis protein AL552_18280 PF08534 Redoxin AL552_18285 PF01578 Cytochrome C assembly protein AL552_18285 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL552_18290 PF03916 Polysulphide reductase, NrfD AL552_18295 PF13247 4Fe-4S dicluster domain AL552_18305 PF02335 Cytochrome c552 AL552_18320 PF03989 DNA gyrase C-terminal domain, beta-propeller AL552_18320 PF00521 DNA gyrase/topoisomerase IV, subunit A AL552_18330 PF03477 ATP cone domain AL552_18330 PF02867 Ribonucleotide reductase, barrel domain AL552_18330 PF00317 Ribonucleotide reductase, all-alpha domain AL552_18335 PF00268 Ribonucleotide reductase, small chain AL552_18345 PF00994 Probable molybdopterin binding domain AL552_18360 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL552_18365 PF03435 Saccharopine dehydrogenase NADP binding domain AL552_18365 PF16653 Saccharopine dehydrogenase C-terminal domain AL552_18370 PF00202 Aminotransferase class-III AL552_18395 PF01066 CDP-alcohol phosphatidyltransferase AL552_18400 PF01541 GIY-YIG catalytic domain AL552_18400 PF02151 UvrB/uvrC motif AL552_18400 PF08459 UvrC Helix-hairpin-helix N-terminal AL552_18405 PF00196 Bacterial regulatory proteins, luxR family AL552_18405 PF00072 Response regulator receiver domain AL552_18410 PF03104 DNA polymerase family B, exonuclease domain AL552_18410 PF00136 DNA polymerase family B AL552_18420 PF01132 Elongation factor P (EF-P) OB domain AL552_18420 PF08207 Elongation factor P (EF-P) KOW-like domain AL552_18420 PF09285 Elongation factor P, C-terminal AL552_18425 PF04269 Protein of unknown function, DUF440 AL552_18430 PF00849 RNA pseudouridylate synthase AL552_18430 PF01479 S4 domain AL552_18440 PF01300 Telomere recombination AL552_18445 PF02811 PHP domain AL552_18450 PF08056 Tryptophan operon leader peptide AL552_18455 PF04715 Anthranilate synthase component I, N terminal region AL552_18455 PF00425 chorismate binding enzyme AL552_18460 PF00117 Glutamine amidotransferase class-I AL552_18465 PF02885 Glycosyl transferase family, helical bundle domain AL552_18465 PF00591 Glycosyl transferase family, a/b domain AL552_18470 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL552_18470 PF00218 Indole-3-glycerol phosphate synthase AL552_18475 PF00291 Pyridoxal-phosphate dependent enzyme AL552_18480 PF00290 Tryptophan synthase alpha chain AL552_18485 PF13545 Crp-like helix-turn-helix domain AL552_18485 PF00027 Cyclic nucleotide-binding domain AL552_18490 PF00501 AMP-binding enzyme AL552_18490 PF13193 AMP-binding enzyme C-terminal domain AL552_18500 PF00375 Sodium:dicarboxylate symporter family AL552_18505 PF17327 Acyl homoserine lactone synthase AL552_18510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_18510 PF00072 Response regulator receiver domain AL552_18520 PF04279 Intracellular septation protein A AL552_18525 PF03061 Thioesterase superfamily AL552_18530 PF03795 YCII-related domain AL552_18540 PF01717 Cobalamin-independent synthase, Catalytic domain AL552_18540 PF08267 Cobalamin-independent synthase, N-terminal domain AL552_18560 PF08448 PAS fold AL552_18560 PF00990 Diguanylate cyclase, GGDEF domain AL552_18560 PF08447 PAS fold AL552_18560 PF00563 EAL domain AL552_18565 PF08497 Radical SAM N-terminal AL552_18565 PF04055 Radical SAM superfamily AL552_18565 PF11842 Domain of unknown function (DUF3362) AL552_18570 PF00672 HAMP domain AL552_18570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_18580 PF00486 Transcriptional regulatory protein, C terminal AL552_18580 PF00072 Response regulator receiver domain AL552_18585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_18585 PF00672 HAMP domain AL552_18585 PF00512 His Kinase A (phospho-acceptor) domain AL552_18600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_18600 PF03466 LysR substrate binding domain AL552_18605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL552_18605 PF00529 HlyD membrane-fusion protein of T1SS AL552_18615 PF08267 Cobalamin-independent synthase, N-terminal domain AL552_18615 PF01717 Cobalamin-independent synthase, Catalytic domain AL552_18635 PF12704 MacB-like periplasmic core domain AL552_18635 PF02687 FtsX-like permease family AL552_18635 PF00005 ABC transporter AL552_18640 PF00005 ABC transporter AL552_18640 PF02687 FtsX-like permease family AL552_18640 PF12704 MacB-like periplasmic core domain AL552_18645 PF12704 MacB-like periplasmic core domain AL552_18645 PF02687 FtsX-like permease family AL552_18645 PF00005 ABC transporter AL552_18655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL552_18670 PF01938 TRAM domain AL552_18670 PF05958 tRNA (Uracil-5-)-methyltransferase AL552_18685 PF00085 Thioredoxin AL552_18690 PF11412 Disulphide bond corrector protein DsbC AL552_18690 PF02683 Cytochrome C biogenesis protein transmembrane region AL552_18700 PF00196 Bacterial regulatory proteins, luxR family AL552_18700 PF00072 Response regulator receiver domain AL552_18705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_18705 PF00512 His Kinase A (phospho-acceptor) domain AL552_18710 PF13247 4Fe-4S dicluster domain AL552_18715 PF03916 Polysulphide reductase, NrfD AL552_18720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL552_18720 PF00384 Molybdopterin oxidoreductase AL552_18720 PF01568 Molydopterin dinucleotide binding domain AL552_18725 PF00034 Cytochrome c AL552_18730 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL552_18735 PF04403 Paraquat-inducible protein A AL552_18740 PF02470 MlaD protein AL552_18755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL552_18760 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL552_18765 PF18073 Rubredoxin metal binding domain AL552_18770 PF06305 Lipopolysaccharide assembly protein A domain AL552_18775 PF00216 Bacterial DNA-binding protein AL552_18780 PF00575 S1 RNA binding domain AL552_18785 PF02224 Cytidylate kinase AL552_18790 PF01343 Peptidase family S49 AL552_18790 PF08496 Peptidase family S49 N-terminal AL552_18795 PF00106 short chain dehydrogenase AL552_18810 PF02811 PHP domain AL552_18810 PF01336 OB-fold nucleic acid binding domain AL552_18810 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL552_18810 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL552_18810 PF14579 Helix-hairpin-helix motif AL552_18815 PF01584 CheW-like domain AL552_18815 PF00072 Response regulator receiver domain AL552_18820 PF00480 ROK family AL552_18825 PF02887 Pyruvate kinase, alpha/beta domain AL552_18825 PF00224 Pyruvate kinase, barrel domain AL552_18830 PF01734 Patatin-like phospholipase AL552_18845 PF00209 Sodium:neurotransmitter symporter family AL552_18855 PF02378 Phosphotransferase system, EIIC AL552_18855 PF00367 phosphotransferase system, EIIB AL552_18860 PF01026 TatD related DNase AL552_18865 PF09115 DNA polymerase III, delta subunit, C terminal AL552_18870 PF02223 Thymidylate kinase AL552_18875 PF02618 YceG-like family AL552_18880 PF01063 Amino-transferase class IV AL552_18885 PF02801 Beta-ketoacyl synthase, C-terminal domain AL552_18885 PF00109 Beta-ketoacyl synthase, N-terminal domain AL552_18890 PF00550 Phosphopantetheine attachment site AL552_18900 PF00698 Acyl transferase domain AL552_18905 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL552_18905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL552_18910 PF02504 Fatty acid synthesis protein AL552_18915 PF01783 Ribosomal L32p protein family AL552_18920 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL552_18925 PF02545 Maf-like protein AL552_18930 PF00849 RNA pseudouridylate synthase AL552_18930 PF01479 S4 domain AL552_18935 PF00575 S1 RNA binding domain AL552_18935 PF10150 Ribonuclease E/G family AL552_18935 PF12111 Polyribonucleotide phosphorylase C terminal AL552_18945 PF01740 STAS domain AL552_18945 PF00916 Sulfate permease family AL552_18950 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL552_18955 PF12557 Cob(I)alamin adenosyltransferase N terminal AL552_18955 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AL552_18965 PF00485 Phosphoribulokinase / Uridine kinase family AL552_18970 PF10609 NUBPL iron-transfer P-loop NTPase AL552_18975 PF09334 tRNA synthetases class I (M) AL552_18975 PF01588 Putative tRNA binding domain AL552_19000 PF07840 FadR C-terminal domain AL552_19000 PF00392 Bacterial regulatory proteins, gntR family AL552_19005 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AL552_19010 PF02600 Disulfide bond formation protein DsbB AL552_19015 PF07517 SecA DEAD-like domain AL552_19015 PF02810 SEC-C motif AL552_19015 PF07516 SecA Wing and Scaffold domain AL552_19015 PF01043 SecA preprotein cross-linking domain AL552_19020 PF01207 Dihydrouridine synthase (Dus) AL552_19025 PF00990 Diguanylate cyclase, GGDEF domain AL552_19025 PF17158 Membrane-associated sensor, integral membrane domain AL552_19030 PF02903 Alpha amylase, N-terminal ig-like domain AL552_19030 PF00128 Alpha amylase, catalytic domain AL552_19035 PF00005 ABC transporter AL552_19040 PF02653 Branched-chain amino acid transport system / permease component AL552_19050 PF04217 Protein of unknown function, DUF412 AL552_19055 PF00871 Acetokinase family AL552_19065 PF13194 Domain of unknown function (DUF4010) AL552_19075 PF13409 Glutathione S-transferase, N-terminal domain AL552_19080 PF00005 ABC transporter AL552_19080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL552_19085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL552_19085 PF00005 ABC transporter AL552_19090 PF00528 Binding-protein-dependent transport system inner membrane component AL552_19090 PF12911 N-terminal TM domain of oligopeptide transport permease C AL552_19095 PF00528 Binding-protein-dependent transport system inner membrane component AL552_19100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL552_19105 PF02391 MoaE protein AL552_19110 PF02597 ThiS family AL552_19115 PF01967 MoaC family AL552_19120 PF00994 Probable molybdopterin binding domain AL552_19125 PF06463 Molybdenum Cofactor Synthesis C AL552_19125 PF04055 Radical SAM superfamily AL552_19130 PF01933 Uncharacterised protein family UPF0052 AL552_19135 PF01627 Hpt domain AL552_19140 PF02954 Bacterial regulatory protein, Fis family AL552_19140 PF00158 Sigma-54 interaction domain AL552_19140 PF00072 Response regulator receiver domain AL552_19145 PF00271 Helicase conserved C-terminal domain AL552_19145 PF12344 Ultra-violet resistance protein B AL552_19145 PF02151 UvrB/uvrC motif AL552_19145 PF04851 Type III restriction enzyme, res subunit AL552_19145 PF17757 UvrB interaction domain AL552_19155 PF02508 Rnf-Nqr subunit, membrane protein AL552_19160 PF04060 Putative Fe-S cluster AL552_19165 PF12838 4Fe-4S dicluster domain AL552_19165 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AL552_19165 PF13375 RnfC Barrel sandwich hybrid domain AL552_19165 PF10531 SLBB domain AL552_19170 PF03116 NQR2, RnfD, RnfE family AL552_19175 PF04205 FMN-binding domain AL552_19180 PF02508 Rnf-Nqr subunit, membrane protein AL552_19185 PF10576 Iron-sulfur binding domain of endonuclease III AL552_19185 PF00730 HhH-GPD superfamily base excision DNA repair protein AL552_19185 PF00633 Helix-hairpin-helix motif AL552_19190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL552_19195 PF10952 Protein of unknown function (DUF2753) AL552_19200 PF00691 OmpA family AL552_19200 PF18393 MotY N-terminal domain AL552_19210 PF00929 Exonuclease AL552_19215 PF03553 Na+/H+ antiporter family AL552_19215 PF13726 Na+-H+ antiporter family AL552_19225 PF00462 Glutaredoxin AL552_19230 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL552_19230 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL552_19245 PF00171 Aldehyde dehydrogenase family AL552_19245 PF00465 Iron-containing alcohol dehydrogenase AL552_19250 PF01914 MarC family integral membrane protein AL552_19255 PF00027 Cyclic nucleotide-binding domain AL552_19255 PF00520 Ion transport protein AL552_19260 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL552_19260 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL552_19265 PF03553 Na+/H+ antiporter family AL552_19280 PF04245 37-kD nucleoid-associated bacterial protein AL552_19285 PF07208 Protein of unknown function (DUF1414) AL552_19290 PF11893 Domain of unknown function (DUF3413) AL552_19290 PF00884 Sulfatase AL552_19300 PF00850 Histone deacetylase domain AL552_19305 PF00106 short chain dehydrogenase AL552_19315 PF01751 Toprim domain AL552_19315 PF01131 DNA topoisomerase AL552_19320 PF00881 Nitroreductase family AL552_19330 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL552_19330 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_19335 PF01343 Peptidase family S49 AL552_19340 PF17763 Glutaminase/Asparaginase C-terminal domain AL552_19340 PF00710 Asparaginase, N-terminal AL552_19345 PF07023 Protein of unknown function (DUF1315) AL552_19355 PF01641 SelR domain AL552_19360 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL552_19360 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL552_19365 PF01263 Aldose 1-epimerase AL552_19370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_19370 PF02743 Cache domain AL552_19370 PF00672 HAMP domain AL552_19375 PF13847 Methyltransferase domain AL552_19395 PF00245 Alkaline phosphatase AL552_19405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL552_19410 PF03992 Antibiotic biosynthesis monooxygenase AL552_19415 PF00924 Mechanosensitive ion channel AL552_19415 PF05552 Conserved TM helix AL552_19420 PF03692 Putative zinc- or iron-chelating domain AL552_19425 PF04226 Transglycosylase associated protein AL552_19430 PF03692 Putative zinc- or iron-chelating domain AL552_19440 PF03313 Serine dehydratase alpha chain AL552_19445 PF01042 Endoribonuclease L-PSP AL552_19455 PF00230 Major intrinsic protein AL552_19460 PF13662 Toprim domain AL552_19460 PF02132 RecR protein AL552_19465 PF02575 YbaB/EbfC DNA-binding family AL552_19470 PF12170 DNA polymerase III tau subunit V interacting with alpha AL552_19470 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AL552_19470 PF12169 DNA polymerase III subunits gamma and tau domain III AL552_19475 PF00156 Phosphoribosyl transferase domain AL552_19490 PF00072 Response regulator receiver domain AL552_19495 PF03466 LysR substrate binding domain AL552_19495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_19500 PF00156 Phosphoribosyl transferase domain AL552_19505 PF02674 Colicin V production protein AL552_19510 PF05036 Sporulation related domain AL552_19515 PF02875 Mur ligase family, glutamate ligase domain AL552_19515 PF08245 Mur ligase middle domain AL552_19520 PF17848 Acetyl-coA carboxylase zinc finger domain AL552_19520 PF01039 Carboxyl transferase domain AL552_19530 PF01416 tRNA pseudouridine synthase AL552_19540 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL552_19540 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL552_19545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL552_19545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL552_19545 PF11890 Domain of unknown function (DUF3410) AL552_19550 PF02801 Beta-ketoacyl synthase, C-terminal domain AL552_19550 PF00109 Beta-ketoacyl synthase, N-terminal domain AL552_19555 PF01266 FAD dependent oxidoreductase AL552_19555 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL552_19560 PF03358 NADPH-dependent FMN reductase AL552_19570 PF08891 YfcL protein AL552_19575 PF04315 Elongation factor P hydroxylase AL552_19585 PF03458 UPF0126 domain AL552_19590 PF01264 Chorismate synthase AL552_19595 PF05175 Methyltransferase small domain AL552_19600 PF01713 Smr domain AL552_19605 PF00300 Histidine phosphatase superfamily (branch 1) AL552_19610 PF00675 Insulinase (Peptidase family M16) AL552_19610 PF05193 Peptidase M16 inactive domain AL552_19610 PF16187 Middle or third domain of peptidase_M16 AL552_19620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL552_19620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL552_19620 PF00378 Enoyl-CoA hydratase/isomerase AL552_19625 PF00108 Thiolase, N-terminal domain AL552_19625 PF02803 Thiolase, C-terminal domain AL552_19630 PF08281 Sigma-70, region 4 AL552_19630 PF04542 Sigma-70 region 2 AL552_19640 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL552_19645 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL552_19655 PF03918 Cytochrome C biogenesis protein AL552_19660 PF03918 Cytochrome C biogenesis protein AL552_19665 PF08534 Redoxin AL552_19670 PF01578 Cytochrome C assembly protein AL552_19670 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL552_19675 PF03100 CcmE AL552_19680 PF04995 Heme exporter protein D (CcmD) AL552_19685 PF01578 Cytochrome C assembly protein AL552_19690 PF03379 CcmB protein AL552_19695 PF00005 ABC transporter AL552_19705 PF01584 CheW-like domain AL552_19715 PF13614 AAA domain AL552_19720 PF01339 CheB methylesterase AL552_19720 PF00072 Response regulator receiver domain AL552_19725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_19725 PF02895 Signal transducing histidine kinase, homodimeric domain AL552_19725 PF01627 Hpt domain AL552_19725 PF07194 P2 response regulator binding domain AL552_19725 PF01584 CheW-like domain AL552_19730 PF04344 Chemotaxis phosphatase, CheZ AL552_19735 PF00072 Response regulator receiver domain AL552_19740 PF04542 Sigma-70 region 2 AL552_19740 PF04545 Sigma-70, region 4 AL552_19740 PF04539 Sigma-70 region 3 AL552_19745 PF10609 NUBPL iron-transfer P-loop NTPase AL552_19750 PF00448 SRP54-type protein, GTPase domain AL552_19755 PF00771 FHIPEP family AL552_19760 PF01312 FlhB HrpN YscU SpaS Family AL552_19765 PF01311 Bacterial export proteins, family 1 AL552_19770 PF01313 Bacterial export proteins, family 3 AL552_19775 PF00813 FliP family AL552_19780 PF04347 Flagellar biosynthesis protein, FliO AL552_19785 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL552_19790 PF02154 Flagellar motor switch protein FliM AL552_19790 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL552_19810 PF18269 T3SS EscN ATPase C-terminal domain AL552_19810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL552_19820 PF01706 FliG C-terminal domain AL552_19820 PF14841 FliG middle domain AL552_19820 PF14842 FliG N-terminal domain AL552_19825 PF08345 Flagellar M-ring protein C-terminal AL552_19825 PF01514 Secretory protein of YscJ/FliF family AL552_19830 PF02049 Flagellar hook-basal body complex protein FliE AL552_19835 PF00072 Response regulator receiver domain AL552_19835 PF02954 Bacterial regulatory protein, Fis family AL552_19835 PF00158 Sigma-54 interaction domain AL552_19840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_19840 PF00512 His Kinase A (phospho-acceptor) domain AL552_19845 PF00158 Sigma-54 interaction domain AL552_19845 PF02954 Bacterial regulatory protein, Fis family AL552_19845 PF01590 GAF domain AL552_19850 PF02561 Flagellar protein FliS AL552_19860 PF02465 Flagellar hook-associated protein 2 N-terminus AL552_19860 PF07195 Flagellar hook-associated protein 2 C-terminus AL552_19860 PF07196 Flagellin hook IN motif AL552_19865 PF03646 FlaG protein AL552_19870 PF00669 Bacterial flagellin N-terminal helical region AL552_19870 PF07196 Flagellin hook IN motif AL552_19870 PF00700 Bacterial flagellin C-terminal helical region AL552_19875 PF00700 Bacterial flagellin C-terminal helical region AL552_19875 PF00669 Bacterial flagellin N-terminal helical region AL552_19875 PF07196 Flagellin hook IN motif AL552_19885 PF00669 Bacterial flagellin N-terminal helical region AL552_19885 PF07196 Flagellin hook IN motif AL552_19885 PF00700 Bacterial flagellin C-terminal helical region AL552_19890 PF04261 Dyp-type peroxidase family AL552_19895 PF11143 Protein of unknown function (DUF2919) AL552_19915 PF03960 ArsC family AL552_19920 PF01546 Peptidase family M20/M25/M40 AL552_19920 PF07687 Peptidase dimerisation domain AL552_19940 PF00701 Dihydrodipicolinate synthetase family AL552_19950 PF00578 AhpC/TSA family AL552_19955 PF01594 AI-2E family transporter AL552_19965 PF13181 Tetratricopeptide repeat AL552_19965 PF01435 Peptidase family M48 AL552_19970 PF03960 ArsC family AL552_19975 PF03358 NADPH-dependent FMN reductase AL552_19990 PF00860 Permease family AL552_20000 PF00586 AIR synthase related protein, N-terminal domain AL552_20000 PF02769 AIR synthase related protein, C-terminal domain AL552_20005 PF00551 Formyl transferase AL552_20010 PF13230 Glutamine amidotransferases class-II AL552_20015 PF13580 SIS domain AL552_20020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL552_20020 PF09317 Domain of unknown function (DUF1974) AL552_20020 PF02770 Acyl-CoA dehydrogenase, middle domain AL552_20020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL552_20025 PF01740 STAS domain AL552_20025 PF00916 Sulfate permease family AL552_20050 PF00929 Exonuclease AL552_20055 PF00075 RNase H AL552_20060 PF08241 Methyltransferase domain AL552_20065 PF00753 Metallo-beta-lactamase superfamily AL552_20065 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL552_20070 PF01464 Transglycosylase SLT domain AL552_20070 PF01476 LysM domain AL552_20080 PF03372 Endonuclease/Exonuclease/phosphatase family AL552_20085 PF00543 Nitrogen regulatory protein P-II AL552_20090 PF00034 Cytochrome c AL552_20095 PF09179 TilS substrate binding domain AL552_20095 PF11734 TilS substrate C-terminal domain AL552_20095 PF01171 PP-loop family AL552_20100 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AL552_20105 PF14579 Helix-hairpin-helix motif AL552_20105 PF01336 OB-fold nucleic acid binding domain AL552_20105 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL552_20105 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL552_20105 PF02811 PHP domain AL552_20110 PF01351 Ribonuclease HII AL552_20115 PF02684 Lipid-A-disaccharide synthetase AL552_20120 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL552_20120 PF00132 Bacterial transferase hexapeptide (six repeats) AL552_20125 PF07977 FabA-like domain AL552_20130 PF00132 Bacterial transferase hexapeptide (six repeats) AL552_20130 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL552_20135 PF03938 Outer membrane protein (OmpH-like) AL552_20145 PF17820 PDZ domain AL552_20145 PF02163 Peptidase family M50 AL552_20150 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL552_20150 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL552_20150 PF13288 DXP reductoisomerase C-terminal domain AL552_20160 PF01255 Putative undecaprenyl diphosphate synthase AL552_20165 PF01765 Ribosome recycling factor AL552_20170 PF00696 Amino acid kinase family AL552_20175 PF00889 Elongation factor TS AL552_20180 PF00318 Ribosomal protein S2 AL552_20185 PF00557 Metallopeptidase family M24 AL552_20195 PF11944 Protein of unknown function (DUF3461) AL552_20200 PF00849 RNA pseudouridylate synthase AL552_20205 PF00849 RNA pseudouridylate synthase AL552_20205 PF04287 tRNA pseudouridine synthase C AL552_20230 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AL552_20235 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL552_20235 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL552_20240 PF01370 NAD dependent epimerase/dehydratase family AL552_20265 PF03806 AbgT putative transporter family AL552_20270 PF00444 Ribosomal protein L36 AL552_20275 PF01197 Ribosomal protein L31 AL552_20280 PF18389 TrmO C-terminal domain AL552_20280 PF01980 tRNA-methyltransferase O AL552_20285 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL552_20285 PF04073 Aminoacyl-tRNA editing domain AL552_20285 PF03129 Anticodon binding domain AL552_20295 PF06786 Uncharacterised protein family (UPF0253) AL552_20305 PF00209 Sodium:neurotransmitter symporter family AL552_20310 PF00704 Glycosyl hydrolases family 18 AL552_20310 PF06483 Chitinase C AL552_20320 PF03449 Transcription elongation factor, N-terminal AL552_20320 PF01272 Transcription elongation factor, GreA/GreB, C-term AL552_20325 PF09382 RQC domain AL552_20325 PF16124 RecQ zinc-binding AL552_20325 PF00270 DEAD/DEAH box helicase AL552_20325 PF00271 Helicase conserved C-terminal domain AL552_20325 PF00570 HRDC domain AL552_20345 PF02424 ApbE family AL552_20350 PF00970 Oxidoreductase FAD-binding domain AL552_20350 PF00175 Oxidoreductase NAD-binding domain AL552_20350 PF00111 2Fe-2S iron-sulfur cluster binding domain AL552_20355 PF02508 Rnf-Nqr subunit, membrane protein AL552_20360 PF02508 Rnf-Nqr subunit, membrane protein AL552_20365 PF04205 FMN-binding domain AL552_20370 PF03116 NQR2, RnfD, RnfE family AL552_20375 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AL552_20375 PF11973 NQRA C-terminal domain AL552_20385 PF01722 BolA-like protein AL552_20390 PF05175 Methyltransferase small domain AL552_20395 PF03923 Uncharacterized lipoprotein AL552_20395 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL552_20400 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL552_20405 PF07690 Major Facilitator Superfamily AL552_20415 PF04542 Sigma-70 region 2 AL552_20415 PF04545 Sigma-70, region 4 AL552_20435 PF03502 Nucleoside-specific channel-forming protein, Tsx AL552_20440 PF02558 Ketopantoate reductase PanE/ApbA AL552_20440 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL552_20445 PF01965 DJ-1/PfpI family AL552_20450 PF00266 Aminotransferase class-V AL552_20455 PF17158 Membrane-associated sensor, integral membrane domain AL552_20455 PF00990 Diguanylate cyclase, GGDEF domain AL552_20460 PF02657 Fe-S metabolism associated domain AL552_20465 PF00899 ThiF family AL552_20470 PF06725 3D domain AL552_20470 PF03562 MltA specific insert domain AL552_20485 PF00696 Amino acid kinase family AL552_20485 PF00583 Acetyltransferase (GNAT) family AL552_20505 PF13538 UvrD-like helicase C-terminal domain AL552_20510 PF12705 PD-(D/E)XK nuclease superfamily AL552_20510 PF00580 UvrD/REP helicase N-terminal domain AL552_20510 PF13361 UvrD-like helicase C-terminal domain AL552_20520 PF17946 RecC C-terminal domain AL552_20525 PF00884 Sulfatase AL552_20525 PF11893 Domain of unknown function (DUF3413) AL552_20535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_20535 PF03466 LysR substrate binding domain AL552_20540 PF07130 YebG protein AL552_20545 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AL552_20545 PF14602 Hexapeptide repeat of succinyl-transferase AL552_20550 PF03009 Glycerophosphoryl diester phosphodiesterase family AL552_20555 PF07690 Major Facilitator Superfamily AL552_20565 PF00230 Major intrinsic protein AL552_20570 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL552_20570 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL552_20575 PF08220 DeoR-like helix-turn-helix domain AL552_20575 PF00455 DeoR C terminal sensor domain AL552_20580 PF01266 FAD dependent oxidoreductase AL552_20580 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL552_20585 PF01544 CorA-like Mg2+ transporter protein AL552_20600 PF01588 Putative tRNA binding domain AL552_20605 PF00356 Bacterial regulatory proteins, lacI family AL552_20610 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL552_20610 PF14579 Helix-hairpin-helix motif AL552_20610 PF00929 Exonuclease AL552_20610 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL552_20610 PF02811 PHP domain AL552_20620 PF00474 Sodium:solute symporter family AL552_20625 PF01263 Aldose 1-epimerase AL552_20630 PF10509 Galactokinase galactose-binding signature AL552_20630 PF00288 GHMP kinases N terminal domain AL552_20630 PF08544 GHMP kinases C terminal AL552_20635 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AL552_20635 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AL552_20640 PF16363 GDP-mannose 4,6 dehydratase AL552_20650 PF00356 Bacterial regulatory proteins, lacI family AL552_20655 PF16353 Domain of unknown function(DUF4981) AL552_20655 PF02929 Beta galactosidase small chain AL552_20655 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL552_20655 PF00703 Glycosyl hydrolases family 2 AL552_20655 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL552_20660 PF04074 YhcH/YjgK/YiaL AL552_20665 PF13520 Amino acid permease AL552_20670 PF03466 LysR substrate binding domain AL552_20670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_20700 PF00437 Type II/IV secretion system protein AL552_20730 PF04972 BON domain AL552_20730 PF00263 Bacterial type II and III secretion system protein AL552_20730 PF13629 Pilus formation protein N terminal region AL552_20755 PF12833 Helix-turn-helix domain AL552_20755 PF02805 Metal binding domain of Ada AL552_20760 PF00501 AMP-binding enzyme AL552_20775 PF14492 Elongation Factor G, domain II AL552_20775 PF00679 Elongation factor G C-terminus AL552_20775 PF03144 Elongation factor Tu domain 2 AL552_20775 PF00009 Elongation factor Tu GTP binding domain AL552_20775 PF03764 Elongation factor G, domain IV AL552_20780 PF18073 Rubredoxin metal binding domain AL552_20790 PF18429 Domain of unknown function (DUF5609) AL552_20800 PF01048 Phosphorylase superfamily AL552_20805 PF01676 Metalloenzyme superfamily AL552_20810 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AL552_20810 PF00591 Glycosyl transferase family, a/b domain AL552_20810 PF02885 Glycosyl transferase family, helical bundle domain AL552_20815 PF01791 DeoC/LacD family aldolase AL552_20825 PF07662 Na+ dependent nucleoside transporter C-terminus AL552_20825 PF01773 Na+ dependent nucleoside transporter N-terminus AL552_20825 PF07670 Nucleoside recognition AL552_20830 PF01026 TatD related DNase AL552_20840 PF00009 Elongation factor Tu GTP binding domain AL552_20840 PF03144 Elongation factor Tu domain 2 AL552_20840 PF16658 Class II release factor RF3, C-terminal domain AL552_20860 PF13508 Acetyltransferase (GNAT) domain AL552_20875 PF00990 Diguanylate cyclase, GGDEF domain AL552_20875 PF03707 Bacterial signalling protein N terminal repeat AL552_20875 PF00563 EAL domain AL552_20905 PF00575 S1 RNA binding domain AL552_20905 PF03725 3' exoribonuclease family, domain 2 AL552_20905 PF01138 3' exoribonuclease family, domain 1 AL552_20905 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL552_20905 PF00013 KH domain AL552_20910 PF00312 Ribosomal protein S15 AL552_20915 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL552_20915 PF09157 Pseudouridine synthase II TruB, C-terminal AL552_20915 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL552_20920 PF02033 Ribosome-binding factor A AL552_20925 PF04760 Translation initiation factor IF-2, N-terminal region AL552_20925 PF08364 Bacterial translation initiation factor IF-2 associated region AL552_20925 PF11987 Translation-initiation factor 2 AL552_20925 PF00009 Elongation factor Tu GTP binding domain AL552_20930 PF00575 S1 RNA binding domain AL552_20930 PF08529 NusA N-terminal domain AL552_20930 PF13184 NusA-like KH domain AL552_20935 PF02576 RimP N-terminal domain AL552_20935 PF17384 RimP C-terminal SH3 domain AL552_20950 PF03840 Preprotein translocase SecG subunit AL552_20960 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL552_20960 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL552_20960 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL552_20960 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL552_20965 PF00809 Pterin binding enzyme AL552_20970 PF00004 ATPase family associated with various cellular activities (AAA) AL552_20970 PF01434 Peptidase family M41 AL552_20970 PF17862 AAA+ lid domain AL552_20970 PF06480 FtsH Extracellular AL552_20975 PF01728 FtsJ-like methyltransferase AL552_20980 PF01985 CRS1 / YhbY (CRM) domain AL552_20985 PF01272 Transcription elongation factor, GreA/GreB, C-term AL552_20985 PF03449 Transcription elongation factor, N-terminal AL552_20990 PF13609 Gram-negative porin AL552_20995 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL552_21005 PF00579 tRNA synthetases class I (W and Y) AL552_21015 PF00873 AcrB/AcrD/AcrF family AL552_21025 PF01521 Iron-sulphur cluster biosynthesis AL552_21030 PF00202 Aminotransferase class-III AL552_21035 PF01594 AI-2E family transporter AL552_21040 PF05175 Methyltransferase small domain AL552_21040 PF08468 Methyltransferase small domain N-terminal AL552_21045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_21045 PF00512 His Kinase A (phospho-acceptor) domain AL552_21045 PF09308 LuxQ, periplasmic AL552_21045 PF00072 Response regulator receiver domain AL552_21050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL552_21055 PF00528 Binding-protein-dependent transport system inner membrane component AL552_21065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL552_21065 PF00005 ABC transporter AL552_21070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL552_21070 PF00005 ABC transporter AL552_21080 PF01869 BadF/BadG/BcrA/BcrD ATPase family AL552_21085 PF00728 Glycosyl hydrolase family 20, catalytic domain AL552_21085 PF02838 Glycosyl hydrolase family 20, domain 2 AL552_21090 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL552_21090 PF06165 Glycosyltransferase family 36 AL552_21095 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL552_21095 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL552_21095 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL552_21095 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL552_21100 PF00005 ABC transporter AL552_21100 PF08402 TOBE domain AL552_21110 PF13416 Bacterial extracellular solute-binding protein AL552_21115 PF00909 Ammonium Transporter Family AL552_21120 PF00543 Nitrogen regulatory protein P-II AL552_21125 PF06062 Uncharacterised protein family (UPF0231) AL552_21130 PF11791 Aconitate B N-terminal domain AL552_21130 PF06434 Aconitate hydratase 2 N-terminus AL552_21130 PF00330 Aconitase family (aconitate hydratase) AL552_21135 PF01734 Patatin-like phospholipase AL552_21140 PF14814 Bifunctional transglycosylase second domain AL552_21140 PF00905 Penicillin binding protein transpeptidase domain AL552_21140 PF00912 Transglycosylase AL552_21145 PF00270 DEAD/DEAH box helicase AL552_21145 PF04408 Helicase associated domain (HA2) AL552_21145 PF00271 Helicase conserved C-terminal domain AL552_21145 PF08482 ATP-dependent helicase C-terminal AL552_21150 PF03749 Sugar fermentation stimulation protein RE domain AL552_21150 PF17746 SfsA N-terminal OB domain AL552_21155 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL552_21160 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL552_21165 PF12626 Polymerase A arginine-rich C-terminus AL552_21165 PF01743 Poly A polymerase head domain AL552_21165 PF12627 Probable RNA and SrmB- binding site of polymerase A AL552_21170 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL552_21175 PF02548 Ketopantoate hydroxymethyltransferase AL552_21180 PF02569 Pantoate-beta-alanine ligase AL552_21185 PF03279 Bacterial lipid A biosynthesis acyltransferase AL552_21195 PF01061 ABC-2 type transporter AL552_21200 PF00005 ABC transporter AL552_21205 PF01740 STAS domain AL552_21205 PF00916 Sulfate permease family AL552_21210 PF00484 Carbonic anhydrase AL552_21215 PF00156 Phosphoribosyl transferase domain AL552_21220 PF00440 Bacterial regulatory proteins, tetR family AL552_21225 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_21225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL552_21230 PF00364 Biotin-requiring enzyme AL552_21230 PF02817 e3 binding domain AL552_21230 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL552_21235 PF00456 Transketolase, thiamine diphosphate binding domain AL552_21235 PF17831 Pyruvate dehydrogenase E1 component middle domain AL552_21240 PF07729 FCD domain AL552_21240 PF00392 Bacterial regulatory proteins, gntR family AL552_21245 PF01510 N-acetylmuramoyl-L-alanine amidase AL552_21250 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL552_21250 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL552_21255 PF07963 Prokaryotic N-terminal methylation motif AL552_21255 PF00114 Pilin (bacterial filament) AL552_21260 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL552_21260 PF00437 Type II/IV secretion system protein AL552_21265 PF00482 Type II secretion system (T2SS), protein F AL552_21270 PF01478 Type IV leader peptidase family AL552_21270 PF06750 Bacterial Peptidase A24 N-terminal domain AL552_21275 PF01121 Dephospho-CoA kinase AL552_21280 PF07072 Cell division protein AL552_21285 PF03884 DNA gyrase inhibitor YacG AL552_21290 PF01245 Ribosomal protein L19 AL552_21295 PF01746 tRNA (Guanine-1)-methyltransferase AL552_21300 PF01782 RimM N-terminal domain AL552_21300 PF05239 PRC-barrel domain AL552_21305 PF00886 Ribosomal protein S16 AL552_21310 PF02978 Signal peptide binding domain AL552_21310 PF02881 SRP54-type protein, helical bundle domain AL552_21310 PF00448 SRP54-type protein, GTPase domain AL552_21315 PF01578 Cytochrome C assembly protein AL552_21320 PF00571 CBS domain AL552_21320 PF03471 Transporter associated domain AL552_21320 PF01595 Cyclin M transmembrane N-terminal domain AL552_21325 PF02664 S-Ribosylhomocysteinase (LuxS) AL552_21335 PF04262 Glutamate-cysteine ligase AL552_21340 PF05193 Peptidase M16 inactive domain AL552_21340 PF00675 Insulinase (Peptidase family M16) AL552_21345 PF09335 SNARE associated Golgi protein AL552_21355 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL552_21360 PF00364 Biotin-requiring enzyme AL552_21360 PF00682 HMGL-like AL552_21360 PF02436 Conserved carboxylase domain AL552_21365 PF04277 Oxaloacetate decarboxylase, gamma chain AL552_21425 PF02599 Global regulator protein family AL552_21430 PF13840 ACT domain AL552_21430 PF00696 Amino acid kinase family AL552_21430 PF01842 ACT domain AL552_21435 PF02272 DHHA1 domain AL552_21435 PF01411 tRNA synthetases class II (A) AL552_21435 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL552_21440 PF02631 RecX family AL552_21445 PF00154 recA bacterial DNA recombination protein AL552_21455 PF01624 MutS domain I AL552_21455 PF05188 MutS domain II AL552_21455 PF00488 MutS domain V AL552_21455 PF05190 MutS family domain IV AL552_21455 PF05192 MutS domain III AL552_21460 PF04545 Sigma-70, region 4 AL552_21460 PF04539 Sigma-70 region 3 AL552_21460 PF04542 Sigma-70 region 2 AL552_21460 PF00140 Sigma-70 factor, region 1.2 AL552_21465 PF01551 Peptidase family M23 AL552_21465 PF01476 LysM domain AL552_21475 PF01975 Survival protein SurE AL552_21480 PF01142 tRNA pseudouridine synthase D (TruD) AL552_21485 PF02542 YgbB family AL552_21490 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL552_21495 PF04977 Septum formation initiator AL552_21500 PF03952 Enolase, N-terminal domain AL552_21500 PF00113 Enolase, C-terminal TIM barrel domain AL552_21505 PF00117 Glutamine amidotransferase class-I AL552_21505 PF06418 CTP synthase N-terminus AL552_21510 PF03819 MazG nucleotide pyrophosphohydrolase domain AL552_21515 PF02824 TGS domain AL552_21515 PF04607 Region found in RelA / SpoT proteins AL552_21515 PF13291 ACT domain AL552_21525 PF05958 tRNA (Uracil-5-)-methyltransferase AL552_21525 PF01938 TRAM domain AL552_21535 PF00672 HAMP domain AL552_21535 PF00072 Response regulator receiver domain AL552_21535 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL552_21535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_21535 PF00512 His Kinase A (phospho-acceptor) domain AL552_21535 PF01627 Hpt domain AL552_21540 PF01648 4'-phosphopantetheinyl transferase superfamily AL552_21545 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL552_21550 PF11967 Recombination protein O N terminal AL552_21550 PF02565 Recombination protein O C terminal AL552_21555 PF01926 50S ribosome-binding GTPase AL552_21555 PF07650 KH domain AL552_21560 PF00035 Double-stranded RNA binding motif AL552_21560 PF14622 Ribonuclease-III-like AL552_21565 PF10502 Signal peptidase, peptidase S26 AL552_21570 PF06421 GTP-binding protein LepA C-terminus AL552_21570 PF00679 Elongation factor G C-terminus AL552_21570 PF00009 Elongation factor Tu GTP binding domain AL552_21570 PF03144 Elongation factor Tu domain 2 AL552_21580 PF03888 MucB/RseB N-terminal domain AL552_21580 PF17188 MucB/RseB C-terminal domain AL552_21585 PF03873 Anti sigma-E protein RseA, C-terminal domain AL552_21585 PF03872 Anti sigma-E protein RseA, N-terminal domain AL552_21590 PF08281 Sigma-70, region 4 AL552_21590 PF04542 Sigma-70 region 2 AL552_21600 PF02910 Fumarate reductase flavoprotein C-term AL552_21600 PF00890 FAD binding domain AL552_21610 PF03937 Flavinator of succinate dehydrogenase AL552_21615 PF01571 Aminomethyltransferase folate-binding domain AL552_21630 PF01494 FAD binding domain AL552_21635 PF01494 FAD binding domain AL552_21640 PF03695 Uncharacterised protein family (UPF0149) AL552_21650 PF05164 Cell division protein ZapA AL552_21660 PF01812 5-formyltetrahydrofolate cyclo-ligase family AL552_21665 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL552_21670 PF01842 ACT domain AL552_21670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL552_21670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL552_21675 PF04402 Protein of unknown function (DUF541) AL552_21680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_21680 PF03466 LysR substrate binding domain AL552_21685 PF01810 LysE type translocator AL552_21695 PF00924 Mechanosensitive ion channel AL552_21695 PF05552 Conserved TM helix AL552_21700 PF01116 Fructose-bisphosphate aldolase class-II AL552_21705 PF00162 Phosphoglycerate kinase AL552_21710 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL552_21710 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL552_21715 PF07715 TonB-dependent Receptor Plug Domain AL552_21715 PF00593 TonB dependent receptor AL552_21720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_21720 PF03466 LysR substrate binding domain AL552_21725 PF02780 Transketolase, C-terminal domain AL552_21725 PF02779 Transketolase, pyrimidine binding domain AL552_21725 PF00456 Transketolase, thiamine diphosphate binding domain AL552_21735 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL552_21735 PF02772 S-adenosylmethionine synthetase, central domain AL552_21735 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL552_21745 PF17283 SprT-like zinc ribbon domain AL552_21745 PF10263 SprT-like family AL552_21750 PF04231 Endonuclease I AL552_21755 PF04452 RNA methyltransferase AL552_21760 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL552_21760 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL552_21765 PF02622 Uncharacterized ACR, COG1678 AL552_21770 PF03652 Holliday junction resolvase AL552_21775 PF00437 Type II/IV secretion system protein AL552_21780 PF00437 Type II/IV secretion system protein AL552_21785 PF01168 Alanine racemase, N-terminal domain AL552_21790 PF03807 NADP oxidoreductase coenzyme F420-dependent AL552_21790 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL552_21795 PF02325 YGGT family AL552_21800 PF02594 Uncharacterised ACR, YggU family COG1872 AL552_21810 PF01725 Ham1 family AL552_21815 PF04055 Radical SAM superfamily AL552_21815 PF06969 HemN C-terminal domain AL552_21820 PF04960 Glutaminase AL552_21825 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL552_21830 PF02390 Putative methyltransferase AL552_21835 PF00633 Helix-hairpin-helix motif AL552_21835 PF00730 HhH-GPD superfamily base excision DNA repair protein AL552_21835 PF14815 NUDIX domain AL552_21840 PF04362 Bacterial Fe(2+) trafficking AL552_21845 PF01464 Transglycosylase SLT domain AL552_21845 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL552_21885 PF17200 Single Cache domain 2 AL552_21885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL552_21885 PF00672 HAMP domain AL552_21915 PF00171 Aldehyde dehydrogenase family AL552_21965 PF04794 YdjC-like protein AL552_21970 PF02056 Family 4 glycosyl hydrolase AL552_21970 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL552_21975 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AL552_21980 PF02378 Phosphotransferase system, EIIC AL552_21985 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL552_21990 PF01522 Polysaccharide deacetylase AL552_22005 PF10011 Predicted membrane protein (DUF2254) AL552_22015 PF03739 Lipopolysaccharide export system permease LptF/LptG AL552_22020 PF03739 Lipopolysaccharide export system permease LptF/LptG AL552_22025 PF02789 Cytosol aminopeptidase family, N-terminal domain AL552_22025 PF00883 Cytosol aminopeptidase family, catalytic domain AL552_22030 PF04364 DNA polymerase III chi subunit, HolC AL552_22035 PF08264 Anticodon-binding domain of tRNA AL552_22035 PF00133 tRNA synthetases class I (I, L, M and V) AL552_22035 PF10458 Valyl tRNA synthetase tRNA binding arm AL552_22045 PF00583 Acetyltransferase (GNAT) family AL552_22055 PF06877 Regulator of ribonuclease activity B AL552_22065 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL552_22065 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL552_22075 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL552_22075 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL552_22080 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL552_22080 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL552_22085 PF01042 Endoribonuclease L-PSP AL552_22090 PF01553 Acyltransferase AL552_22095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL552_22100 PF01722 BolA-like protein AL552_22110 PF05494 MlaC protein AL552_22115 PF02470 MlaD protein AL552_22120 PF02405 Permease MlaE AL552_22125 PF00005 ABC transporter AL552_22130 PF01699 Sodium/calcium exchanger protein AL552_22135 PF00571 CBS domain AL552_22135 PF01380 SIS domain AL552_22145 PF03968 OstA-like protein AL552_22150 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL552_22150 PF00005 ABC transporter AL552_22155 PF04552 Sigma-54, DNA binding domain AL552_22155 PF04963 Sigma-54 factor, core binding domain AL552_22155 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL552_22160 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL552_22165 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL552_22170 PF03668 P-loop ATPase protein family AL552_22175 PF00381 PTS HPr component phosphorylation site AL552_22180 PF03448 MgtE intracellular N domain AL552_22180 PF01769 Divalent cation transporter AL552_22180 PF00571 CBS domain AL552_22185 PF01523 Putative modulator of DNA gyrase AL552_22190 PF04751 Protein of unknown function (DUF615) AL552_22195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL552_22195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL552_22200 PF00849 RNA pseudouridylate synthase AL552_22210 PF18339 RapA N-terminal Tudor like domain 1 AL552_22210 PF18337 RapA N-terminal Tudor like domain AL552_22210 PF00176 SNF2 family N-terminal domain AL552_22210 PF12137 RNA polymerase recycling family C-terminal AL552_22210 PF00271 Helicase conserved C-terminal domain AL552_22215 PF13638 PIN domain AL552_22215 PF02562 PhoH-like protein AL552_22220 PF01523 Putative modulator of DNA gyrase AL552_22225 PF00795 Carbon-nitrogen hydrolase AL552_22230 PF13116 Protein of unknown function AL552_22230 PF13502 AsmA-like C-terminal region AL552_22235 PF00575 S1 RNA binding domain AL552_22235 PF10150 Ribonuclease E/G family AL552_22240 PF02545 Maf-like protein AL552_22245 PF04093 rod shape-determining protein MreD AL552_22250 PF04085 rod shape-determining protein MreC AL552_22290 PF07963 Prokaryotic N-terminal methylation motif AL552_22290 PF08334 Type II secretion system (T2SS), protein G AL552_22300 PF00482 Type II secretion system (T2SS), protein F AL552_22305 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL552_22305 PF00437 Type II/IV secretion system protein AL552_22315 PF01471 Putative peptidoglycan binding domain AL552_22315 PF13401 AAA domain AL552_22320 PF03958 Bacterial type II/III secretion system short domain AL552_22320 PF00263 Bacterial type II and III secretion system protein AL552_22340 PF00563 EAL domain AL552_22340 PF17157 Gammaproteobacterial periplasmic sensor domain AL552_22340 PF00990 Diguanylate cyclase, GGDEF domain AL552_22345 PF00436 Single-strand binding protein family AL552_22350 PF00196 Bacterial regulatory proteins, luxR family AL552_22355 PF00483 Nucleotidyl transferase AL552_22360 PF17760 UvrA interaction domain AL552_22360 PF17755 UvrA DNA-binding domain AL552_22360 PF00005 ABC transporter AL552_22370 PF00266 Aminotransferase class-V AL552_22385 PF00696 Amino acid kinase family AL552_22385 PF01842 ACT domain AL552_22395 PF00999 Sodium/hydrogen exchanger family AL552_22460 PF01507 Phosphoadenosine phosphosulfate reductase family AL552_22465 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL552_22465 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL552_22470 PF00667 FAD binding domain AL552_22470 PF00258 Flavodoxin AL552_22470 PF00175 Oxidoreductase NAD-binding domain AL552_22490 PF01207 Dihydrouridine synthase (Dus) AL552_22495 PF01475 Ferric uptake regulator family AL552_22505 PF00342 Phosphoglucose isomerase AL552_22510 PF01894 Uncharacterised protein family UPF0047 AL552_22520 PF00772 DnaB-like helicase N terminal domain AL552_22520 PF03796 DnaB-like helicase C terminal domain AL552_22530 PF01281 Ribosomal protein L9, N-terminal domain AL552_22530 PF03948 Ribosomal protein L9, C-terminal domain AL552_22535 PF01084 Ribosomal protein S18 AL552_22540 PF00436 Single-strand binding protein family AL552_22545 PF01250 Ribosomal protein S6 AL552_22550 PF00834 Ribulose-phosphate 3 epimerase family AL552_22555 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL552_22565 PF01761 3-dehydroquinate synthase AL552_22570 PF01202 Shikimate kinase AL552_22575 PF00263 Bacterial type II and III secretion system protein AL552_22575 PF03958 Bacterial type II/III secretion system short domain AL552_22575 PF07660 Secretin and TonB N terminus short domain AL552_22575 PF11741 AMIN domain AL552_22600 PF00905 Penicillin binding protein transpeptidase domain AL552_22600 PF17092 Penicillin-binding protein OB-like domain AL552_22600 PF00912 Transglycosylase AL552_22605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_22605 PF03466 LysR substrate binding domain AL552_22610 PF00462 Glutaredoxin AL552_22610 PF08534 Redoxin AL552_22615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL552_22615 PF00403 Heavy-metal-associated domain AL552_22615 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_22630 PF00583 Acetyltransferase (GNAT) family AL552_22630 PF14698 Argininosuccinate lyase C-terminal AL552_22630 PF00206 Lyase AL552_22635 PF00764 Arginosuccinate synthase AL552_22640 PF00696 Amino acid kinase family AL552_22645 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL552_22645 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL552_22650 PF07687 Peptidase dimerisation domain AL552_22650 PF01546 Peptidase family M20/M25/M40 AL552_22655 PF00311 Phosphoenolpyruvate carboxylase AL552_22665 PF02219 Methylenetetrahydrofolate reductase AL552_22670 PF00696 Amino acid kinase family AL552_22670 PF00742 Homoserine dehydrogenase AL552_22670 PF03447 Homoserine dehydrogenase, NAD binding domain AL552_22675 PF01053 Cys/Met metabolism PLP-dependent enzyme AL552_22685 PF00390 Malic enzyme, N-terminal domain AL552_22685 PF03949 Malic enzyme, NAD binding domain AL552_22690 PF00210 Ferritin-like domain AL552_22695 PF04324 BFD-like [2Fe-2S] binding domain AL552_22700 PF03143 Elongation factor Tu C-terminal domain AL552_22700 PF03144 Elongation factor Tu domain 2 AL552_22700 PF00009 Elongation factor Tu GTP binding domain AL552_22705 PF03144 Elongation factor Tu domain 2 AL552_22705 PF00009 Elongation factor Tu GTP binding domain AL552_22705 PF14492 Elongation Factor G, domain II AL552_22705 PF00679 Elongation factor G C-terminus AL552_22705 PF03764 Elongation factor G, domain IV AL552_22710 PF00177 Ribosomal protein S7p/S5e AL552_22715 PF00164 Ribosomal protein S12/S23 AL552_22720 PF04077 DsrH like protein AL552_22725 PF02635 DsrE/DsrF-like family AL552_22730 PF02635 DsrE/DsrF-like family AL552_22735 PF08348 YheO-like PAS domain AL552_22735 PF13309 HTH domain AL552_22740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL552_22740 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL552_22750 PF04102 SlyX AL552_22755 PF01112 Asparaginase AL552_22760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL552_22770 PF00999 Sodium/hydrogen exchanger family AL552_22770 PF02254 TrkA-N domain AL552_22775 PF02525 Flavodoxin-like fold AL552_22785 PF00005 ABC transporter AL552_22785 PF12848 ABC transporter AL552_22795 PF00561 alpha/beta hydrolase fold AL552_22800 PF06794 Uncharacterised protein family (UPF0270) AL552_22805 PF00485 Phosphoribulokinase / Uridine kinase family AL552_22810 PF13545 Crp-like helix-turn-helix domain AL552_22810 PF00027 Cyclic nucleotide-binding domain AL552_22820 PF00171 Aldehyde dehydrogenase family AL552_22825 PF04958 Arginine N-succinyltransferase beta subunit AL552_22830 PF00202 Aminotransferase class-III AL552_22835 PF00117 Glutamine amidotransferase class-I AL552_22850 PF00579 tRNA synthetases class I (W and Y) AL552_22855 PF13419 Haloacid dehalogenase-like hydrolase AL552_22860 PF00588 SpoU rRNA Methylase family AL552_22860 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL552_22865 PF17876 Cold shock domain AL552_22865 PF00773 RNB domain AL552_22865 PF00575 S1 RNA binding domain AL552_22865 PF08461 Ribonuclease R winged-helix domain AL552_22865 PF08206 Ribonuclease B OB domain AL552_22870 PF02082 Transcriptional regulator AL552_22875 PF00970 Oxidoreductase FAD-binding domain AL552_22875 PF00042 Globin AL552_22875 PF00175 Oxidoreductase NAD-binding domain AL552_22880 PF08238 Sel1 repeat AL552_22890 PF00709 Adenylosuccinate synthetase AL552_22895 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AL552_22900 PF01145 SPFH domain / Band 7 family AL552_22905 PF01145 SPFH domain / Band 7 family AL552_22905 PF12221 Bacterial membrane protein N terminal AL552_22910 PF13167 GTP-binding GTPase N-terminal AL552_22910 PF16360 GTP-binding GTPase Middle Region AL552_22910 PF01926 50S ribosome-binding GTPase AL552_22915 PF17209 Hfq protein AL552_22925 PF01119 DNA mismatch repair protein, C-terminal domain AL552_22925 PF08676 MutL C terminal dimerisation domain AL552_22930 PF01520 N-acetylmuramoyl-L-alanine amidase AL552_22935 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL552_22945 PF08331 Domain of unknown function (DUF1730) AL552_23010 PF00929 Exonuclease AL552_23015 PF03193 RsgA GTPase AL552_23020 PF02666 Phosphatidylserine decarboxylase AL552_23025 PF00939 Sodium:sulfate symporter transmembrane region AL552_23035 PF01676 Metalloenzyme superfamily AL552_23035 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AL552_23040 PF00581 Rhodanese-like domain AL552_23045 PF02556 Preprotein translocase subunit SecB AL552_23050 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL552_23050 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL552_23055 PF06426 Serine acetyltransferase, N-terminal AL552_23055 PF00132 Bacterial transferase hexapeptide (six repeats) AL552_23060 PF01551 Peptidase family M23 AL552_23070 PF08360 QacR-like protein, C-terminal region AL552_23070 PF00440 Bacterial regulatory proteins, tetR family AL552_23080 PF00152 tRNA synthetases class II (D, K and N) AL552_23085 PF02910 Fumarate reductase flavoprotein C-term AL552_23085 PF00890 FAD binding domain AL552_23090 PF13085 2Fe-2S iron-sulfur cluster binding domain AL552_23090 PF13183 4Fe-4S dicluster domain AL552_23095 PF02300 Fumarate reductase subunit C AL552_23100 PF02313 Fumarate reductase subunit D AL552_23110 PF01132 Elongation factor P (EF-P) OB domain AL552_23110 PF08207 Elongation factor P (EF-P) KOW-like domain AL552_23110 PF09285 Elongation factor P, C-terminal AL552_23115 PF04055 Radical SAM superfamily AL552_23120 PF02308 MgtC family AL552_23130 PF00118 TCP-1/cpn60 chaperonin family AL552_23135 PF00166 Chaperonin 10 Kd subunit AL552_23140 PF01554 MatE AL552_23145 PF00365 Phosphofructokinase AL552_23150 PF01545 Cation efflux family AL552_23150 PF16916 Dimerisation domain of Zinc Transporter AL552_23155 PF07813 LTXXQ motif family protein AL552_23160 PF00072 Response regulator receiver domain AL552_23160 PF00486 Transcriptional regulatory protein, C terminal AL552_23165 PF16527 Two-component sensor protein CpxA, periplasmic domain AL552_23165 PF00512 His Kinase A (phospho-acceptor) domain AL552_23165 PF00672 HAMP domain AL552_23165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_23170 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL552_23170 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL552_23175 PF00588 SpoU rRNA Methylase family AL552_23180 PF04186 FxsA cytoplasmic membrane protein AL552_23185 PF10415 Fumarase C C-terminus AL552_23185 PF00206 Lyase AL552_23190 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL552_23195 PF11412 Disulphide bond corrector protein DsbC AL552_23195 PF02683 Cytochrome C biogenesis protein transmembrane region AL552_23200 PF00072 Response regulator receiver domain AL552_23200 PF00196 Bacterial regulatory proteins, luxR family AL552_23205 PF00999 Sodium/hydrogen exchanger family AL552_23205 PF03471 Transporter associated domain AL552_23205 PF02080 TrkA-C domain AL552_23215 PF00474 Sodium:solute symporter family AL552_23230 PF00206 Lyase AL552_23230 PF10415 Fumarase C C-terminus AL552_23235 PF00072 Response regulator receiver domain AL552_23235 PF09308 LuxQ, periplasmic AL552_23235 PF00512 His Kinase A (phospho-acceptor) domain AL552_23235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_23240 PF12832 MFS_1 like family AL552_23255 PF00501 AMP-binding enzyme AL552_23255 PF16177 Acetyl-coenzyme A synthetase N-terminus AL552_23255 PF13193 AMP-binding enzyme C-terminal domain AL552_23260 PF01220 Dehydroquinase class II AL552_23265 PF00364 Biotin-requiring enzyme AL552_23270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL552_23270 PF00289 Biotin carboxylase, N-terminal domain AL552_23270 PF02785 Biotin carboxylase C-terminal domain AL552_23285 PF01207 Dihydrouridine synthase (Dus) AL552_23290 PF02954 Bacterial regulatory protein, Fis family AL552_23300 PF12848 ABC transporter AL552_23300 PF00005 ABC transporter AL552_23360 PF01276 Orn/Lys/Arg decarboxylase, major domain AL552_23360 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL552_23360 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL552_23365 PF13520 Amino acid permease AL552_23375 PF18500 CadC C-terminal domain 1 AL552_23375 PF00486 Transcriptional regulatory protein, C terminal AL552_23380 PF13411 MerR HTH family regulatory protein AL552_23390 PF01808 AICARFT/IMPCHase bienzyme AL552_23390 PF02142 MGS-like domain AL552_23400 PF02843 Phosphoribosylglycinamide synthetase, C domain AL552_23400 PF02844 Phosphoribosylglycinamide synthetase, N domain AL552_23400 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL552_23410 PF00216 Bacterial DNA-binding protein AL552_23415 PF00571 CBS domain AL552_23415 PF01595 Cyclin M transmembrane N-terminal domain AL552_23420 PF04222 Protein of unknown function (DUF416) AL552_23425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL552_23430 PF03167 Uracil DNA glycosylase superfamily AL552_23435 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL552_23440 PF09297 NADH pyrophosphatase zinc ribbon domain AL552_23440 PF00293 NUDIX domain AL552_23445 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AL552_23450 PF04997 RNA polymerase Rpb1, domain 1 AL552_23450 PF00623 RNA polymerase Rpb1, domain 2 AL552_23450 PF04983 RNA polymerase Rpb1, domain 3 AL552_23450 PF05000 RNA polymerase Rpb1, domain 4 AL552_23450 PF04998 RNA polymerase Rpb1, domain 5 AL552_23455 PF10385 RNA polymerase beta subunit external 1 domain AL552_23455 PF04561 RNA polymerase Rpb2, domain 2 AL552_23455 PF00562 RNA polymerase Rpb2, domain 6 AL552_23455 PF04560 RNA polymerase Rpb2, domain 7 AL552_23455 PF04565 RNA polymerase Rpb2, domain 3 AL552_23455 PF04563 RNA polymerase beta subunit AL552_23460 PF00542 Ribosomal protein L7/L12 C-terminal domain AL552_23460 PF16320 Ribosomal protein L7/L12 dimerisation domain AL552_23465 PF00466 Ribosomal protein L10 AL552_23470 PF00687 Ribosomal protein L1p/L10e family AL552_23475 PF00298 Ribosomal protein L11, RNA binding domain AL552_23475 PF03946 Ribosomal protein L11, N-terminal domain AL552_23480 PF02357 Transcription termination factor nusG AL552_23480 PF00467 KOW motif AL552_23485 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL552_23495 PF00009 Elongation factor Tu GTP binding domain AL552_23495 PF03144 Elongation factor Tu domain 2 AL552_23495 PF03143 Elongation factor Tu C-terminal domain AL552_23525 PF02237 Biotin protein ligase C terminal domain AL552_23525 PF03099 Biotin/lipoate A/B protein ligase family AL552_23525 PF08279 HTH domain AL552_23530 PF01565 FAD binding domain AL552_23530 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL552_23540 PF13091 PLD-like domain AL552_23610 PF01177 Asp/Glu/Hydantoin racemase AL552_23620 PF00593 TonB dependent receptor AL552_23620 PF07715 TonB-dependent Receptor Plug Domain AL552_23625 PF05958 tRNA (Uracil-5-)-methyltransferase AL552_23665 PF04002 RadC-like JAB domain AL552_23670 PF11867 Domain of unknown function (DUF3387) AL552_23670 PF18766 SWI2/SNF2 ATPase AL552_23670 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL552_23680 PF01420 Type I restriction modification DNA specificity domain AL552_23685 PF02384 N-6 DNA Methylase AL552_23705 PF00990 Diguanylate cyclase, GGDEF domain AL552_23705 PF00563 EAL domain AL552_23705 PF13185 GAF domain AL552_23710 PF04976 DMSO reductase anchor subunit (DmsC) AL552_23715 PF12800 4Fe-4S binding domain AL552_23715 PF13247 4Fe-4S dicluster domain AL552_23720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL552_23720 PF01568 Molydopterin dinucleotide binding domain AL552_23720 PF00384 Molybdopterin oxidoreductase AL552_23725 PF02613 Nitrate reductase delta subunit AL552_23730 PF12838 4Fe-4S dicluster domain AL552_23730 PF00037 4Fe-4S binding domain AL552_23735 PF00990 Diguanylate cyclase, GGDEF domain AL552_23735 PF08447 PAS fold AL552_23735 PF08448 PAS fold AL552_23735 PF00563 EAL domain AL552_23750 PF00440 Bacterial regulatory proteins, tetR family AL552_23755 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_23755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL552_23760 PF01554 MatE AL552_23765 PF04072 Leucine carboxyl methyltransferase AL552_23775 PF00717 Peptidase S24-like AL552_23775 PF01726 LexA DNA binding domain AL552_23785 PF01553 Acyltransferase AL552_23790 PF01040 UbiA prenyltransferase family AL552_23795 PF04345 Chorismate lyase AL552_23800 PF03748 Flagellar basal body-associated protein FliL AL552_23805 PF01694 Rhomboid family AL552_23805 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL552_23810 PF00581 Rhodanese-like domain AL552_23815 PF04542 Sigma-70 region 2 AL552_23815 PF04545 Sigma-70, region 4 AL552_23815 PF00140 Sigma-70 factor, region 1.2 AL552_23820 PF18075 FtsX extracellular domain AL552_23825 PF00005 ABC transporter AL552_23830 PF00448 SRP54-type protein, GTPase domain AL552_23830 PF02881 SRP54-type protein, helical bundle domain AL552_23845 PF01914 MarC family integral membrane protein AL552_23875 PF10694 Protein of unknown function (DUF2500) AL552_23895 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL552_23895 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL552_23900 PF01022 Bacterial regulatory protein, arsR family AL552_23905 PF08668 HDOD domain AL552_23905 PF00563 EAL domain AL552_23910 PF01810 LysE type translocator AL552_23915 PF12146 Serine aminopeptidase, S33 AL552_23940 PF00990 Diguanylate cyclase, GGDEF domain AL552_23940 PF10442 FIST C domain AL552_23940 PF08495 FIST N domain AL552_23940 PF00563 EAL domain AL552_23945 PF13419 Haloacid dehalogenase-like hydrolase AL552_23950 PF02899 Phage integrase, N-terminal SAM-like domain AL552_23950 PF00589 Phage integrase family AL552_23960 PF01678 Diaminopimelate epimerase AL552_23965 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL552_23965 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL552_23975 PF01491 Frataxin-like domain AL552_23980 PF01295 Adenylate cyclase, class-I AL552_23980 PF12633 Adenylate cyclase NT domain AL552_23985 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL552_23985 PF03900 Porphobilinogen deaminase, C-terminal domain AL552_23990 PF02602 Uroporphyrinogen-III synthase HemD AL552_23995 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AL552_24000 PF07219 HemY protein N-terminus AL552_24040 PF00175 Oxidoreductase NAD-binding domain AL552_24045 PF00111 2Fe-2S iron-sulfur cluster binding domain AL552_24050 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL552_24065 PF07498 Rho termination factor, N-terminal domain AL552_24065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL552_24065 PF07497 Rho termination factor, RNA-binding domain AL552_24070 PF00085 Thioredoxin AL552_24075 PF00270 DEAD/DEAH box helicase AL552_24075 PF00271 Helicase conserved C-terminal domain AL552_24080 PF02541 Ppx/GppA phosphatase family AL552_24085 PF02592 Putative vitamin uptake transporter AL552_24095 PF16124 RecQ zinc-binding AL552_24095 PF00570 HRDC domain AL552_24095 PF00270 DEAD/DEAH box helicase AL552_24095 PF00271 Helicase conserved C-terminal domain AL552_24095 PF09382 RQC domain AL552_24100 PF00892 EamA-like transporter family AL552_24125 PF00580 UvrD/REP helicase N-terminal domain AL552_24125 PF13361 UvrD-like helicase C-terminal domain AL552_24135 PF05114 Protein of unknown function (DUF692) AL552_24155 PF07690 Major Facilitator Superfamily AL552_24160 PF03466 LysR substrate binding domain AL552_24160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_24165 PF01321 Creatinase/Prolidase N-terminal domain AL552_24165 PF00557 Metallopeptidase family M24 AL552_24165 PF01321 Creatinase/Prolidase N-terminal domain AL552_24165 PF00557 Metallopeptidase family M24 AL552_24170 PF06968 Biotin and Thiamin Synthesis associated domain AL552_24170 PF04055 Radical SAM superfamily AL552_24175 PF05690 Thiazole biosynthesis protein ThiG AL552_24180 PF02597 ThiS family AL552_24185 PF00899 ThiF family AL552_24190 PF02581 Thiamine monophosphate synthase AL552_24195 PF13667 ThiC-associated domain AL552_24195 PF01964 Radical SAM ThiC family AL552_24200 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL552_24205 PF07732 Multicopper oxidase AL552_24205 PF07731 Multicopper oxidase AL552_24205 PF00394 Multicopper oxidase AL552_24255 PF12724 Flavodoxin domain AL552_24260 PF02386 Cation transport protein AL552_24265 PF01205 Uncharacterized protein family UPF0029 AL552_24265 PF09186 Domain of unknown function (DUF1949) AL552_24270 PF00378 Enoyl-CoA hydratase/isomerase AL552_24270 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL552_24270 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL552_24275 PF00108 Thiolase, N-terminal domain AL552_24275 PF02803 Thiolase, C-terminal domain AL552_24280 PF08240 Alcohol dehydrogenase GroES-like domain AL552_24280 PF00107 Zinc-binding dehydrogenase AL552_24285 PF03466 LysR substrate binding domain AL552_24285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_24295 PF01206 Sulfurtransferase TusA AL552_24305 PF01169 Uncharacterized protein family UPF0016 AL552_24310 PF02091 Glycyl-tRNA synthetase alpha subunit AL552_24315 PF02092 Glycyl-tRNA synthetase beta subunit AL552_24315 PF05746 DALR anticodon binding domain AL552_24320 PF00128 Alpha amylase, catalytic domain AL552_24325 PF00155 Aminotransferase class I and II AL552_24330 PF00011 Hsp20/alpha crystallin family AL552_24345 PF00986 DNA gyrase B subunit, carboxyl terminus AL552_24345 PF00204 DNA gyrase B AL552_24345 PF01751 Toprim domain AL552_24345 PF18053 DNA gyrase B subunit insert domain AL552_24345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_24350 PF02463 RecF/RecN/SMC N terminal domain AL552_24355 PF02768 DNA polymerase III beta subunit, C-terminal domain AL552_24355 PF02767 DNA polymerase III beta subunit, central domain AL552_24355 PF00712 DNA polymerase III beta subunit, N-terminal domain AL552_24360 PF00308 Bacterial dnaA protein AL552_24360 PF08299 Bacterial dnaA protein helix-turn-helix AL552_24360 PF11638 DnaA N-terminal domain AL552_24370 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL552_24375 PF00528 Binding-protein-dependent transport system inner membrane component AL552_24380 PF00005 ABC transporter AL552_24385 PF00468 Ribosomal protein L34 AL552_24390 PF00825 Ribonuclease P AL552_24395 PF01809 Putative membrane protein insertion efficiency factor AL552_24400 PF02096 60Kd inner membrane protein AL552_24400 PF14849 YidC periplasmic domain AL552_24405 PF10396 GTP-binding protein TrmE N-terminus AL552_24405 PF12631 MnmE helical domain AL552_24405 PF01926 50S ribosome-binding GTPase AL552_24410 PF02899 Phage integrase, N-terminal SAM-like domain AL552_24410 PF00589 Phage integrase family AL552_24515 PF00258 Flavodoxin AL552_24520 PF13932 GidA associated domain AL552_24520 PF01134 Glucose inhibited division protein A AL552_24525 PF02527 rRNA small subunit methyltransferase G AL552_24530 PF13614 AAA domain AL552_24535 PF17762 HTH domain found in ParB protein AL552_24535 PF02195 ParB-like nuclease domain AL552_24540 PF03899 ATP synthase I chain AL552_24545 PF00119 ATP synthase A chain AL552_24550 PF00137 ATP synthase subunit C AL552_24555 PF00430 ATP synthase B/B' CF(0) AL552_24565 PF00306 ATP synthase alpha/beta chain, C terminal domain AL552_24565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL552_24565 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL552_24570 PF00231 ATP synthase AL552_24575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL552_24575 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL552_24580 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL552_24580 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL552_24585 PF12804 MobA-like NTP transferase domain AL552_24585 PF00132 Bacterial transferase hexapeptide (six repeats) AL552_24590 PF00528 Binding-protein-dependent transport system inner membrane component AL552_24595 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL552_24600 PF07690 Major Facilitator Superfamily AL552_24605 PF03466 LysR substrate binding domain AL552_24605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_24610 PF00291 Pyridoxal-phosphate dependent enzyme AL552_24610 PF00585 C-terminal regulatory domain of Threonine dehydratase AL552_24615 PF00920 Dehydratase family AL552_24620 PF01063 Amino-transferase class IV AL552_24630 PF00205 Thiamine pyrophosphate enzyme, central domain AL552_24630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL552_24630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL552_24635 PF01078 Magnesium chelatase, subunit ChlI AL552_24635 PF13335 Magnesium chelatase, subunit ChlI C-terminal AL552_24645 PF01553 Acyltransferase AL552_24650 PF01323 DSBA-like thioredoxin domain AL552_24655 PF01636 Phosphotransferase enzyme family AL552_24660 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL552_24660 PF12801 4Fe-4S binding domain AL552_24660 PF13746 4Fe-4S dicluster domain AL552_24665 PF06288 Protein of unknown function (DUF1040) AL552_24675 PF07070 SpoOM protein AL552_24680 PF03006 Haemolysin-III related AL552_24690 PF02386 Cation transport protein AL552_24695 PF02254 TrkA-N domain AL552_24695 PF02080 TrkA-C domain AL552_24700 PF01029 NusB family AL552_24700 PF01189 16S rRNA methyltransferase RsmB/F AL552_24705 PF02911 Formyl transferase, C-terminal domain AL552_24705 PF00551 Formyl transferase AL552_24710 PF01327 Polypeptide deformylase AL552_24720 PF17782 DprA winged helix domain AL552_24720 PF02481 DNA recombination-mediator protein A AL552_24725 PF04361 Protein of unknown function (DUF494) AL552_24730 PF01396 Topoisomerase DNA binding C4 zinc finger AL552_24735 PF02222 ATP-grasp domain AL552_24735 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL552_24740 PF00731 AIR carboxylase AL552_24745 PF01300 Telomere recombination AL552_24750 PF01218 Coproporphyrinogen III oxidase AL552_24755 PF01488 Shikimate / quinate 5-dehydrogenase AL552_24755 PF08501 Shikimate dehydrogenase substrate binding domain AL552_24755 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL552_24760 PF07369 Protein of unknown function (DUF1488) AL552_24765 PF00132 Bacterial transferase hexapeptide (six repeats) AL552_24805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_24805 PF03466 LysR substrate binding domain AL552_24810 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL552_24810 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL552_24815 PF04380 Membrane fusogenic activity AL552_24820 PF00873 AcrB/AcrD/AcrF family AL552_24825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL552_24830 PF16295 Tetracyclin repressor-like, C-terminal domain AL552_24830 PF00440 Bacterial regulatory proteins, tetR family AL552_24840 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL552_24870 PF13419 Haloacid dehalogenase-like hydrolase AL552_24880 PF00005 ABC transporter AL552_24880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL552_24885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL552_24895 PF12911 N-terminal TM domain of oligopeptide transport permease C AL552_24895 PF00528 Binding-protein-dependent transport system inner membrane component AL552_24940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL552_24940 PF00356 Bacterial regulatory proteins, lacI family AL552_24945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_24945 PF03466 LysR substrate binding domain AL552_24950 PF00893 Small Multidrug Resistance protein AL552_24955 PF00893 Small Multidrug Resistance protein AL552_24960 PF00920 Dehydratase family AL552_24965 PF01202 Shikimate kinase AL552_24970 PF02447 GntP family permease AL552_24975 PF01081 KDPG and KHG aldolase AL552_24980 PF01048 Phosphorylase superfamily AL552_24985 PF03466 LysR substrate binding domain AL552_24985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL552_24990 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL552_24990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL552_24995 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL552_25000 PF01432 Peptidase family M3 AL552_25005 PF01037 Lrp/AsnC ligand binding domain AL552_25010 PF08448 PAS fold AL552_25010 PF00990 Diguanylate cyclase, GGDEF domain AL552_25010 PF00563 EAL domain AL552_25015 PF04445 Putative SAM-dependent methyltransferase AL552_25025 PF00892 EamA-like transporter family AL552_25030 PF00582 Universal stress protein family AL552_25035 PF00210 Ferritin-like domain AL552_25040 PF10625 Universal stress protein B (UspB) AL552_25050 PF02954 Bacterial regulatory protein, Fis family AL552_25050 PF00158 Sigma-54 interaction domain AL552_25050 PF01590 GAF domain AL552_25075 PF00781 Diacylglycerol kinase catalytic domain AL552_25105 PF01594 AI-2E family transporter AL552_25110 PF00990 Diguanylate cyclase, GGDEF domain AL552_25110 PF03707 Bacterial signalling protein N terminal repeat AL552_25110 PF00563 EAL domain AL552_25120 PF02646 RmuC family AL552_25125 PF01209 ubiE/COQ5 methyltransferase family AL552_25130 PF02036 SCP-2 sterol transfer family AL552_25135 PF03109 ABC1 family AL552_25140 PF02416 mttA/Hcf106 family AL552_25145 PF02416 mttA/Hcf106 family AL552_25150 PF00902 Sec-independent protein translocase protein (TatC) AL552_25160 PF01026 TatD related DNase AL552_25170 PF00490 Delta-aminolevulinic acid dehydratase AL552_25175 PF00583 Acetyltransferase (GNAT) family AL552_25185 PF01612 3'-5' exonuclease AL552_25185 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL552_25185 PF00476 DNA polymerase family A AL552_25185 PF01367 5'-3' exonuclease, C-terminal SAM fold AL552_25195 PF01926 50S ribosome-binding GTPase AL552_25200 PF00034 Cytochrome c AL552_25215 PF04220 Der GTPase activator (YihI) AL552_25220 PF10675 Protein of unknown function (DUF2489) AL552_25225 PF04055 Radical SAM superfamily AL552_25225 PF06969 HemN C-terminal domain AL552_25230 PF00962 Adenosine/AMP deaminase AL552_25235 PF03707 Bacterial signalling protein N terminal repeat AL552_25235 PF00990 Diguanylate cyclase, GGDEF domain AL552_25235 PF00563 EAL domain AL552_25240 PF00072 Response regulator receiver domain AL552_25240 PF02954 Bacterial regulatory protein, Fis family AL552_25240 PF00158 Sigma-54 interaction domain AL552_25245 PF00989 PAS fold AL552_25245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL552_25245 PF00512 His Kinase A (phospho-acceptor) domain AL552_25255 PF03951 Glutamine synthetase, beta-Grasp domain AL552_25255 PF00120 Glutamine synthetase, catalytic domain