locus-tag class description LJY22_00005 PF00308 Bacterial dnaA protein LJY22_00005 PF08299 Bacterial dnaA protein helix-turn-helix LJY22_00005 PF11638 DnaA N-terminal domain LJY22_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LJY22_00010 PF02767 DNA polymerase III beta subunit, central domain LJY22_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LJY22_00015 PF02463 RecF/RecN/SMC N terminal domain LJY22_00020 PF01751 Toprim domain LJY22_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_00020 PF00986 DNA gyrase B subunit, carboxyl terminus LJY22_00020 PF00204 DNA gyrase B LJY22_00020 PF18053 DNA gyrase B subunit insert domain LJY22_00030 PF00011 Hsp20/alpha crystallin family LJY22_00035 PF00155 Aminotransferase class I and II LJY22_00040 PF00128 Alpha amylase, catalytic domain LJY22_00045 PF02092 Glycyl-tRNA synthetase beta subunit LJY22_00045 PF05746 DALR anticodon binding domain LJY22_00050 PF02091 Glycyl-tRNA synthetase alpha subunit LJY22_00060 PF01169 Uncharacterized protein family UPF0016 LJY22_00070 PF01206 Sulfurtransferase TusA LJY22_00080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_00080 PF03466 LysR substrate binding domain LJY22_00085 PF08240 Alcohol dehydrogenase GroES-like domain LJY22_00085 PF00107 Zinc-binding dehydrogenase LJY22_00090 PF02803 Thiolase, C-terminal domain LJY22_00090 PF00108 Thiolase, N-terminal domain LJY22_00095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LJY22_00095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LJY22_00095 PF00378 Enoyl-CoA hydratase/isomerase LJY22_00100 PF09186 Domain of unknown function (DUF1949) LJY22_00100 PF01205 Uncharacterized protein family UPF0029 LJY22_00105 PF02386 Cation transport protein LJY22_00110 PF12724 Flavodoxin domain LJY22_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_00145 PF03466 LysR substrate binding domain LJY22_00150 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LJY22_00150 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LJY22_00155 PF04380 Membrane fusogenic activity LJY22_00160 PF00873 AcrB/AcrD/AcrF family LJY22_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJY22_00170 PF16295 Tetracyclin repressor-like, C-terminal domain LJY22_00170 PF00440 Bacterial regulatory proteins, tetR family LJY22_00175 PF00580 UvrD/REP helicase N-terminal domain LJY22_00175 PF13361 UvrD-like helicase C-terminal domain LJY22_00180 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LJY22_00210 PF13419 Haloacid dehalogenase-like hydrolase LJY22_00215 PF00005 ABC transporter LJY22_00215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJY22_00220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJY22_00225 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_00230 PF12911 N-terminal TM domain of oligopeptide transport permease C LJY22_00230 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_00270 PF00356 Bacterial regulatory proteins, lacI family LJY22_00270 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LJY22_00275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_00275 PF03466 LysR substrate binding domain LJY22_00280 PF00893 Small Multidrug Resistance protein LJY22_00285 PF00893 Small Multidrug Resistance protein LJY22_00290 PF00920 Dehydratase family LJY22_00295 PF01202 Shikimate kinase LJY22_00300 PF02447 GntP family permease LJY22_00305 PF01081 KDPG and KHG aldolase LJY22_00310 PF01048 Phosphorylase superfamily LJY22_00315 PF03466 LysR substrate binding domain LJY22_00315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_00320 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_00320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LJY22_00325 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LJY22_00330 PF01432 Peptidase family M3 LJY22_00335 PF01037 Lrp/AsnC ligand binding domain LJY22_00340 PF00563 EAL domain LJY22_00340 PF00990 Diguanylate cyclase, GGDEF domain LJY22_00340 PF08448 PAS fold LJY22_00345 PF04445 Putative SAM-dependent methyltransferase LJY22_00355 PF00892 EamA-like transporter family LJY22_00360 PF00582 Universal stress protein family LJY22_00365 PF00210 Ferritin-like domain LJY22_00370 PF10625 Universal stress protein B (UspB) LJY22_00380 PF02954 Bacterial regulatory protein, Fis family LJY22_00380 PF01590 GAF domain LJY22_00380 PF00158 Sigma-54 interaction domain LJY22_00405 PF00781 Diacylglycerol kinase catalytic domain LJY22_00435 PF01594 AI-2E family transporter LJY22_00440 PF03707 Bacterial signalling protein N terminal repeat LJY22_00440 PF00990 Diguanylate cyclase, GGDEF domain LJY22_00440 PF00563 EAL domain LJY22_00450 PF02646 RmuC family LJY22_00455 PF01209 ubiE/COQ5 methyltransferase family LJY22_00460 PF02036 SCP-2 sterol transfer family LJY22_00465 PF03109 ABC1 family LJY22_00470 PF02416 mttA/Hcf106 family LJY22_00475 PF02416 mttA/Hcf106 family LJY22_00480 PF00902 Sec-independent protein translocase protein (TatC) LJY22_00485 PF01026 TatD related DNase LJY22_00490 PF00490 Delta-aminolevulinic acid dehydratase LJY22_00495 PF00583 Acetyltransferase (GNAT) family LJY22_00500 PF01367 5'-3' exonuclease, C-terminal SAM fold LJY22_00500 PF00476 DNA polymerase family A LJY22_00500 PF01612 3'-5' exonuclease LJY22_00500 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LJY22_00505 PF01926 50S ribosome-binding GTPase LJY22_00510 PF00034 Cytochrome c LJY22_00520 PF04220 Der GTPase activator (YihI) LJY22_00525 PF10675 Protein of unknown function (DUF2489) LJY22_00530 PF04055 Radical SAM superfamily LJY22_00530 PF06969 HemN C-terminal domain LJY22_00535 PF00962 Adenosine/AMP deaminase LJY22_00540 PF03707 Bacterial signalling protein N terminal repeat LJY22_00540 PF00990 Diguanylate cyclase, GGDEF domain LJY22_00540 PF00563 EAL domain LJY22_00545 PF00158 Sigma-54 interaction domain LJY22_00545 PF00072 Response regulator receiver domain LJY22_00545 PF02954 Bacterial regulatory protein, Fis family LJY22_00550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_00550 PF00512 His Kinase A (phospho-acceptor) domain LJY22_00550 PF00989 PAS fold LJY22_00560 PF00120 Glutamine synthetase, catalytic domain LJY22_00560 PF03951 Glutamine synthetase, beta-Grasp domain LJY22_00565 PF03144 Elongation factor Tu domain 2 LJY22_00565 PF00679 Elongation factor G C-terminus LJY22_00565 PF00009 Elongation factor Tu GTP binding domain LJY22_00580 PF03631 Virulence factor BrkB LJY22_00585 PF02580 D-Tyr-tRNA(Tyr) deacylase LJY22_00590 PF09500 Putative thioesterase (yiiD_Cterm) LJY22_00590 PF00583 Acetyltransferase (GNAT) family LJY22_00600 PF01293 Phosphoenolpyruvate carboxykinase LJY22_00605 PF01430 Hsp33 protein LJY22_00610 PF01479 S4 domain LJY22_00615 PF11356 Type II secretion system protein C LJY22_00620 PF00263 Bacterial type II and III secretion system protein LJY22_00620 PF03958 Bacterial type II/III secretion system short domain LJY22_00625 PF00437 Type II/IV secretion system protein LJY22_00630 PF00482 Type II secretion system (T2SS), protein F LJY22_00635 PF07963 Prokaryotic N-terminal methylation motif LJY22_00635 PF08334 Type II secretion system (T2SS), protein G LJY22_00640 PF12019 Type II transport protein GspH LJY22_00645 PF07963 Prokaryotic N-terminal methylation motif LJY22_00645 PF02501 Type II secretion system (T2SS), protein I LJY22_00650 PF11612 Type II secretion system (T2SS), protein J LJY22_00650 PF07963 Prokaryotic N-terminal methylation motif LJY22_00655 PF03934 Type II secretion system (T2SS), protein K LJY22_00660 PF12693 GspL periplasmic domain LJY22_00660 PF05134 Type II secretion system (T2SS), protein L LJY22_00665 PF04612 Type II secretion system (T2SS), protein M LJY22_00670 PF01203 Type II secretion system (T2SS), protein N LJY22_00675 PF00459 Inositol monophosphatase family LJY22_00680 PF00293 NUDIX domain LJY22_00685 PF01106 NifU-like domain LJY22_00685 PF01521 Iron-sulphur cluster biosynthesis LJY22_00690 PF00156 Phosphoribosyl transferase domain LJY22_00695 PF00561 alpha/beta hydrolase fold LJY22_00705 PF17674 HHH domain LJY22_00705 PF00575 S1 RNA binding domain LJY22_00705 PF09371 Tex-like protein N-terminal domain LJY22_00705 PF16921 Tex protein YqgF-like domain LJY22_00715 PF01272 Transcription elongation factor, GreA/GreB, C-term LJY22_00715 PF03449 Transcription elongation factor, N-terminal LJY22_00725 PF00072 Response regulator receiver domain LJY22_00725 PF00486 Transcriptional regulatory protein, C terminal LJY22_00730 PF00512 His Kinase A (phospho-acceptor) domain LJY22_00730 PF00672 HAMP domain LJY22_00730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_00735 PF00860 Permease family LJY22_00740 PF00270 DEAD/DEAH box helicase LJY22_00740 PF00271 Helicase conserved C-terminal domain LJY22_00740 PF17191 RecG wedge domain LJY22_00745 PF12105 SpoU, rRNA methylase, C-terminal LJY22_00745 PF00588 SpoU rRNA Methylase family LJY22_00750 PF02824 TGS domain LJY22_00750 PF04607 Region found in RelA / SpoT proteins LJY22_00750 PF13291 ACT domain LJY22_00755 PF01192 RNA polymerase Rpb6 LJY22_00760 PF00625 Guanylate kinase LJY22_00775 PF02472 Biopolymer transport protein ExbD/TolR LJY22_00780 PF01618 MotA/TolQ/ExbB proton channel family LJY22_00795 PF07715 TonB-dependent Receptor Plug Domain LJY22_00795 PF00593 TonB dependent receptor LJY22_00800 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_00805 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_00805 PF12911 N-terminal TM domain of oligopeptide transport permease C LJY22_00810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJY22_00815 PF00005 ABC transporter LJY22_00815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJY22_00820 PF00005 ABC transporter LJY22_00820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJY22_00840 PF02423 Ornithine cyclodeaminase/mu-crystallin family LJY22_00845 PF03553 Na+/H+ antiporter family LJY22_00855 PF08340 Domain of unknown function (DUF1732) LJY22_00855 PF03755 YicC-like family, N-terminal region LJY22_00860 PF01138 3' exoribonuclease family, domain 1 LJY22_00860 PF03725 3' exoribonuclease family, domain 2 LJY22_00865 PF00156 Phosphoribosyl transferase domain LJY22_00870 PF03279 Bacterial lipid A biosynthesis acyltransferase LJY22_00875 PF00440 Bacterial regulatory proteins, tetR family LJY22_00880 PF04127 DNA / pantothenate metabolism flavoprotein LJY22_00880 PF02441 Flavoprotein LJY22_00885 PF00672 HAMP domain LJY22_00885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_00885 PF17200 Single Cache domain 2 LJY22_00890 PF04002 RadC-like JAB domain LJY22_00895 PF00830 Ribosomal L28 family LJY22_00900 PF00471 Ribosomal protein L33 LJY22_00910 PF06827 Zinc finger found in FPG and IleRS LJY22_00910 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LJY22_00910 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LJY22_00920 PF05686 Glycosyl transferase family 90 LJY22_00925 PF01467 Cytidylyltransferase-like LJY22_00930 PF00535 Glycosyl transferase family 2 LJY22_00935 PF00535 Glycosyl transferase family 2 LJY22_00940 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LJY22_00945 PF01219 Prokaryotic diacylglycerol kinase LJY22_00955 PF16363 GDP-mannose 4,6 dehydratase LJY22_00960 PF00483 Nucleotidyl transferase LJY22_00970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LJY22_00980 PF02719 Polysaccharide biosynthesis protein LJY22_00985 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LJY22_00990 PF02350 UDP-N-acetylglucosamine 2-epimerase LJY22_00995 PF03102 NeuB family LJY22_00995 PF08666 SAF domain LJY22_01005 PF00483 Nucleotidyl transferase LJY22_01010 PF02348 Cytidylyltransferase LJY22_01015 PF07922 Glycosyltransferase family 52 LJY22_01020 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LJY22_01025 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LJY22_01030 PF03279 Bacterial lipid A biosynthesis acyltransferase LJY22_01035 PF01370 NAD dependent epimerase/dehydratase family LJY22_01040 PF06082 Exopolysaccharide biosynthesis protein YbjH LJY22_01065 PF10531 SLBB domain LJY22_01065 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LJY22_01065 PF02563 Polysaccharide biosynthesis/export protein LJY22_01090 PF00535 Glycosyl transferase family 2 LJY22_01090 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 LJY22_01095 PF00535 Glycosyl transferase family 2 LJY22_01105 PF00534 Glycosyl transferases group 1 LJY22_01105 PF13439 Glycosyltransferase Family 4 LJY22_01110 PF01757 Acyltransferase family LJY22_01115 PF00953 Glycosyl transferase family 4 LJY22_01120 PF10996 Beta-Casp domain LJY22_01120 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LJY22_01120 PF00753 Metallo-beta-lactamase superfamily LJY22_01125 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LJY22_01125 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LJY22_01125 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LJY22_01145 PF02397 Bacterial sugar transferase LJY22_01150 PF00291 Pyridoxal-phosphate dependent enzyme LJY22_01160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LJY22_01160 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LJY22_01165 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LJY22_01170 PF02719 Polysaccharide biosynthesis protein LJY22_01180 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LJY22_01180 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LJY22_01180 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LJY22_01185 PF00483 Nucleotidyl transferase LJY22_01190 PF00121 Triosephosphate isomerase LJY22_01215 PF08220 DeoR-like helix-turn-helix domain LJY22_01215 PF00455 DeoR C terminal sensor domain LJY22_01220 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LJY22_01225 PF06005 Cell division protein ZapB LJY22_01230 PF03737 Aldolase/RraA LJY22_01235 PF01040 UbiA prenyltransferase family LJY22_01240 PF00004 ATPase family associated with various cellular activities (AAA) LJY22_01240 PF07724 AAA domain (Cdc48 subfamily) LJY22_01245 PF00227 Proteasome subunit LJY22_01255 PF00356 Bacterial regulatory proteins, lacI family LJY22_01260 PF00270 DEAD/DEAH box helicase LJY22_01260 PF00271 Helicase conserved C-terminal domain LJY22_01260 PF17764 3′ DNA-binding domain (3′BD) LJY22_01260 PF18074 Primosomal protein N C-terminal domain LJY22_01260 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LJY22_01265 PF01197 Ribosomal protein L31 LJY22_01270 PF00338 Ribosomal protein S10p/S20e LJY22_01275 PF00297 Ribosomal protein L3 LJY22_01280 PF00573 Ribosomal protein L4/L1 family LJY22_01285 PF00276 Ribosomal protein L23 LJY22_01290 PF00181 Ribosomal Proteins L2, RNA binding domain LJY22_01290 PF03947 Ribosomal Proteins L2, C-terminal domain LJY22_01295 PF00203 Ribosomal protein S19 LJY22_01300 PF00237 Ribosomal protein L22p/L17e LJY22_01305 PF07650 KH domain LJY22_01305 PF00189 Ribosomal protein S3, C-terminal domain LJY22_01310 PF00252 Ribosomal protein L16p/L10e LJY22_01315 PF00831 Ribosomal L29 protein LJY22_01320 PF00366 Ribosomal protein S17 LJY22_01325 PF00238 Ribosomal protein L14p/L23e LJY22_01330 PF00467 KOW motif LJY22_01330 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LJY22_01335 PF00281 Ribosomal protein L5 LJY22_01335 PF00673 ribosomal L5P family C-terminus LJY22_01340 PF00253 Ribosomal protein S14p/S29e LJY22_01345 PF00410 Ribosomal protein S8 LJY22_01350 PF00347 Ribosomal protein L6 LJY22_01355 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LJY22_01360 PF00333 Ribosomal protein S5, N-terminal domain LJY22_01360 PF03719 Ribosomal protein S5, C-terminal domain LJY22_01365 PF00327 Ribosomal protein L30p/L7e LJY22_01370 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LJY22_01375 PF00344 SecY translocase LJY22_01380 PF00444 Ribosomal protein L36 LJY22_01385 PF00416 Ribosomal protein S13/S18 LJY22_01390 PF00411 Ribosomal protein S11 LJY22_01395 PF00163 Ribosomal protein S4/S9 N-terminal domain LJY22_01395 PF01479 S4 domain LJY22_01400 PF01000 RNA polymerase Rpb3/RpoA insert domain LJY22_01400 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LJY22_01400 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LJY22_01405 PF01196 Ribosomal protein L17 LJY22_01415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LJY22_01415 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LJY22_01425 PF13673 Acetyltransferase (GNAT) domain LJY22_01430 PF03880 DbpA RNA binding domain LJY22_01430 PF00270 DEAD/DEAH box helicase LJY22_01430 PF00271 Helicase conserved C-terminal domain LJY22_01440 PF02872 5'-nucleotidase, C-terminal domain LJY22_01440 PF00149 Calcineurin-like phosphoesterase LJY22_01445 PF10414 Sirohaem synthase dimerisation region LJY22_01445 PF14824 Sirohaem biosynthesis protein central LJY22_01445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LJY22_01450 PF01507 Phosphoadenosine phosphosulfate reductase family LJY22_01455 PF00009 Elongation factor Tu GTP binding domain LJY22_01460 PF03600 Citrate transporter LJY22_01460 PF02080 TrkA-C domain LJY22_01485 PF00005 ABC transporter LJY22_01495 PF10795 Protein of unknown function (DUF2607) LJY22_01500 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LJY22_01505 PF06526 Protein of unknown function (DUF1107) LJY22_01510 PF01625 Peptide methionine sulfoxide reductase LJY22_01515 PF17243 POTRA domain TamA domain 1 LJY22_01515 PF01103 Surface antigen LJY22_01520 PF04357 TamB, inner membrane protein subunit of TAM complex LJY22_01525 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LJY22_01535 PF00719 Inorganic pyrophosphatase LJY22_01540 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LJY22_01545 PF01225 Mur ligase family, catalytic domain LJY22_01545 PF02875 Mur ligase family, glutamate ligase domain LJY22_01545 PF08245 Mur ligase middle domain LJY22_01550 PF02441 Flavoprotein LJY22_01560 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_01565 PF00005 ABC transporter LJY22_01570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_01570 PF03466 LysR substrate binding domain LJY22_01575 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LJY22_01590 PF16868 NMT1-like family LJY22_01595 PF02863 Arginine repressor, C-terminal domain LJY22_01595 PF01316 Arginine repressor, DNA binding domain LJY22_01600 PF00056 lactate/malate dehydrogenase, NAD binding domain LJY22_01600 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LJY22_01610 PF00348 Polyprenyl synthetase LJY22_01615 PF00829 Ribosomal prokaryotic L21 protein LJY22_01620 PF01016 Ribosomal L27 protein LJY22_01625 PF01926 50S ribosome-binding GTPase LJY22_01625 PF01018 GTP1/OBG LJY22_01630 PF06738 Putative threonine/serine exporter LJY22_01635 PF12821 Threonine/Serine exporter, ThrE LJY22_01640 PF00186 Dihydrofolate reductase LJY22_01645 PF00149 Calcineurin-like phosphoesterase LJY22_01650 PF04379 ApaG domain LJY22_01655 PF00398 Ribosomal RNA adenine dimethylase LJY22_01660 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LJY22_01665 PF09312 SurA N-terminal domain LJY22_01670 PF03968 OstA-like protein LJY22_01670 PF04453 LPS transport system D LJY22_01675 PF05099 Tellurite resistance protein TerB LJY22_01675 PF00226 DnaJ domain LJY22_01685 PF00694 Aconitase C-terminal domain LJY22_01690 PF00330 Aconitase family (aconitate hydratase) LJY22_01695 PF00180 Isocitrate/isopropylmalate dehydrogenase LJY22_01700 PF08502 LeuA allosteric (dimerisation) domain LJY22_01700 PF00682 HMGL-like LJY22_01710 PF01569 PAP2 superfamily LJY22_01720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_01720 PF03466 LysR substrate binding domain LJY22_01725 PF00501 AMP-binding enzyme LJY22_01730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LJY22_01730 PF00205 Thiamine pyrophosphate enzyme, central domain LJY22_01730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LJY22_01735 PF10369 Small subunit of acetolactate synthase LJY22_01740 PF00990 Diguanylate cyclase, GGDEF domain LJY22_01750 PF00224 Pyruvate kinase, barrel domain LJY22_01750 PF02887 Pyruvate kinase, alpha/beta domain LJY22_01755 PF00455 DeoR C terminal sensor domain LJY22_01755 PF08220 DeoR-like helix-turn-helix domain LJY22_01760 PF01380 SIS domain LJY22_01770 PF00072 Response regulator receiver domain LJY22_01770 PF00486 Transcriptional regulatory protein, C terminal LJY22_01775 PF00672 HAMP domain LJY22_01775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_01775 PF00512 His Kinase A (phospho-acceptor) domain LJY22_01780 PF00465 Iron-containing alcohol dehydrogenase LJY22_01785 PF02733 Dak1 domain LJY22_01790 PF02734 DAK2 domain LJY22_01795 PF02896 PEP-utilising enzyme, TIM barrel domain LJY22_01795 PF05524 PEP-utilising enzyme, N-terminal LJY22_01795 PF00391 PEP-utilising enzyme, mobile domain LJY22_01800 PF00989 PAS fold LJY22_01800 PF02954 Bacterial regulatory protein, Fis family LJY22_01800 PF00158 Sigma-54 interaction domain LJY22_01805 PF05068 Mannitol repressor LJY22_01810 PF08125 Mannitol dehydrogenase C-terminal domain LJY22_01810 PF01232 Mannitol dehydrogenase Rossmann domain LJY22_01815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LJY22_01815 PF02378 Phosphotransferase system, EIIC LJY22_01815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LJY22_01845 PF03180 NLPA lipoprotein LJY22_01855 PF06803 Protein of unknown function (DUF1232) LJY22_01900 PF02899 Phage integrase, N-terminal SAM-like domain LJY22_01900 PF00589 Phage integrase family LJY22_01925 PF04546 Sigma-70, non-essential region LJY22_01925 PF04542 Sigma-70 region 2 LJY22_01925 PF04539 Sigma-70 region 3 LJY22_01925 PF04545 Sigma-70, region 4 LJY22_01925 PF00140 Sigma-70 factor, region 1.2 LJY22_01925 PF03979 Sigma-70 factor, region 1.1 LJY22_01930 PF10410 DnaB-helicase binding domain of primase LJY22_01930 PF08278 DNA primase DnaG DnaB-binding LJY22_01930 PF08275 DNA primase catalytic core, N-terminal domain LJY22_01930 PF01807 CHC2 zinc finger LJY22_01935 PF09424 Yqey-like protein LJY22_01940 PF01165 Ribosomal protein S21 LJY22_01945 PF00814 Glycoprotease family LJY22_01950 PF00561 alpha/beta hydrolase fold LJY22_01955 PF02660 Glycerol-3-phosphate acyltransferase LJY22_01960 PF02152 Dihydroneopterin aldolase LJY22_01965 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LJY22_01970 PF02673 Bacitracin resistance protein BacA LJY22_01975 PF01966 HD domain LJY22_01975 PF01743 Poly A polymerase head domain LJY22_01975 PF12627 Probable RNA and SrmB- binding site of polymerase A LJY22_01980 PF13401 AAA domain LJY22_01980 PF01471 Putative peptidoglycan binding domain LJY22_01995 PF08239 Bacterial SH3 domain LJY22_02000 PF01384 Phosphate transporter family LJY22_02005 PF01865 Protein of unknown function DUF47 LJY22_02010 PF01928 CYTH domain LJY22_02020 PF00672 HAMP domain LJY22_02020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_02020 PF02743 Cache domain LJY22_02025 PF03710 Glutamate-ammonia ligase adenylyltransferase LJY22_02025 PF08335 GlnD PII-uridylyltransferase LJY22_02030 PF01467 Cytidylyltransferase-like LJY22_02030 PF00294 pfkB family carbohydrate kinase LJY22_02035 PF02321 Outer membrane efflux protein LJY22_02040 PF00293 NUDIX domain LJY22_02045 PF06853 Protein of unknown function (DUF1249) LJY22_02050 PF00149 Calcineurin-like phosphoesterase LJY22_02055 PF05728 Uncharacterised protein family (UPF0227) LJY22_02060 PF00204 DNA gyrase B LJY22_02060 PF00986 DNA gyrase B subunit, carboxyl terminus LJY22_02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_02060 PF01751 Toprim domain LJY22_02065 PF00521 DNA gyrase/topoisomerase IV, subunit A LJY22_02065 PF03989 DNA gyrase C-terminal domain, beta-propeller LJY22_02070 PF13180 PDZ domain LJY22_02075 PF00595 PDZ domain LJY22_02080 PF06295 Protein of unknown function (DUF1043) LJY22_02085 PF03969 AFG1-like ATPase LJY22_02090 PF00572 Ribosomal protein L13 LJY22_02095 PF00380 Ribosomal protein S9/S16 LJY22_02100 PF00355 Rieske [2Fe-2S] domain LJY22_02100 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LJY22_02105 PF00032 Cytochrome b(C-terminal)/b6/petD LJY22_02105 PF00033 Cytochrome b/b6/petB LJY22_02110 PF02167 Cytochrome C1 family LJY22_02115 PF00043 Glutathione S-transferase, C-terminal domain LJY22_02115 PF02798 Glutathione S-transferase, N-terminal domain LJY22_02120 PF04386 Stringent starvation protein B LJY22_02125 PF04972 BON domain LJY22_02130 PF13580 SIS domain LJY22_02135 PF02021 Uncharacterised protein family UPF0102 LJY22_02140 PF04348 LppC putative lipoprotein LJY22_02145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LJY22_02155 PF01795 MraW methylase family LJY22_02160 PF04999 Cell division protein FtsL LJY22_02165 PF00905 Penicillin binding protein transpeptidase domain LJY22_02165 PF03717 Penicillin-binding Protein dimerisation domain LJY22_02170 PF02875 Mur ligase family, glutamate ligase domain LJY22_02170 PF08245 Mur ligase middle domain LJY22_02170 PF01225 Mur ligase family, catalytic domain LJY22_02175 PF01225 Mur ligase family, catalytic domain LJY22_02175 PF02875 Mur ligase family, glutamate ligase domain LJY22_02175 PF08245 Mur ligase middle domain LJY22_02180 PF00953 Glycosyl transferase family 4 LJY22_02180 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LJY22_02185 PF02875 Mur ligase family, glutamate ligase domain LJY22_02185 PF08245 Mur ligase middle domain LJY22_02190 PF01098 Cell cycle protein LJY22_02195 PF04101 Glycosyltransferase family 28 C-terminal domain LJY22_02195 PF03033 Glycosyltransferase family 28 N-terminal domain LJY22_02200 PF02875 Mur ligase family, glutamate ligase domain LJY22_02200 PF08245 Mur ligase middle domain LJY22_02200 PF01225 Mur ligase family, catalytic domain LJY22_02205 PF03799 Cell division protein FtsQ LJY22_02205 PF08478 POTRA domain, FtsQ-type LJY22_02210 PF02491 SHS2 domain inserted in FTSA LJY22_02215 PF12327 FtsZ family, C-terminal domain LJY22_02215 PF00091 Tubulin/FtsZ family, GTPase domain LJY22_02220 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LJY22_02230 PF02810 SEC-C motif LJY22_02230 PF01043 SecA preprotein cross-linking domain LJY22_02230 PF07516 SecA Wing and Scaffold domain LJY22_02230 PF07517 SecA DEAD-like domain LJY22_02235 PF00293 NUDIX domain LJY22_02240 PF05173 Dihydrodipicolinate reductase, C-terminus LJY22_02240 PF01113 Dihydrodipicolinate reductase, N-terminus LJY22_02250 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LJY22_02250 PF00117 Glutamine amidotransferase class-I LJY22_02255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LJY22_02255 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LJY22_02255 PF02142 MGS-like domain LJY22_02260 PF01925 Sulfite exporter TauE/SafE LJY22_02265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_02265 PF03466 LysR substrate binding domain LJY22_02270 PF03458 UPF0126 domain LJY22_02275 PF01497 Periplasmic binding protein LJY22_02280 PF17113 Regulatory signalling modulator protein AmpE LJY22_02280 PF03186 CobD/Cbib protein LJY22_02285 PF01048 Phosphorylase superfamily LJY22_02295 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LJY22_02295 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_02300 PF00310 Glutamine amidotransferases class-II LJY22_02300 PF04898 Glutamate synthase central domain LJY22_02300 PF01645 Conserved region in glutamate synthase LJY22_02300 PF01493 GXGXG motif LJY22_02305 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LJY22_02305 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_02310 PF01493 GXGXG motif LJY22_02310 PF01645 Conserved region in glutamate synthase LJY22_02310 PF00310 Glutamine amidotransferases class-II LJY22_02310 PF04898 Glutamate synthase central domain LJY22_02315 PF16199 Radical_SAM C-terminal domain LJY22_02315 PF04055 Radical SAM superfamily LJY22_02320 PF01590 GAF domain LJY22_02320 PF00990 Diguanylate cyclase, GGDEF domain LJY22_02320 PF00360 Phytochrome region LJY22_02320 PF00563 EAL domain LJY22_02325 PF00989 PAS fold LJY22_02325 PF00072 Response regulator receiver domain LJY22_02325 PF18415 Histidine kinase receptor ArcB trans-membrane domain LJY22_02325 PF00512 His Kinase A (phospho-acceptor) domain LJY22_02325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_02325 PF01627 Hpt domain LJY22_02335 PF00486 Transcriptional regulatory protein, C terminal LJY22_02335 PF00072 Response regulator receiver domain LJY22_02345 PF03737 Aldolase/RraA LJY22_02360 PF00696 Amino acid kinase family LJY22_02360 PF01842 ACT domain LJY22_02360 PF13840 ACT domain LJY22_02360 PF00742 Homoserine dehydrogenase LJY22_02360 PF03447 Homoserine dehydrogenase, NAD binding domain LJY22_02365 PF08544 GHMP kinases C terminal LJY22_02365 PF00288 GHMP kinases N terminal domain LJY22_02370 PF00291 Pyridoxal-phosphate dependent enzyme LJY22_02370 PF14821 Threonine synthase N terminus LJY22_02380 PF01228 Glycine radical LJY22_02385 PF01261 Xylose isomerase-like TIM barrel LJY22_02390 PF03167 Uracil DNA glycosylase superfamily LJY22_02405 PF01235 Sodium:alanine symporter family LJY22_02410 PF03883 Peroxide stress protein YaaA LJY22_02415 PF00270 DEAD/DEAH box helicase LJY22_02415 PF00271 Helicase conserved C-terminal domain LJY22_02420 PF05175 Methyltransferase small domain LJY22_02425 PF05525 Branched-chain amino acid transport protein LJY22_02430 PF00258 Flavodoxin LJY22_02435 PF02899 Phage integrase, N-terminal SAM-like domain LJY22_02435 PF00589 Phage integrase family LJY22_02440 PF10411 Disulfide bond isomerase protein N-terminus LJY22_02440 PF13098 Thioredoxin-like domain LJY22_02445 PF17768 RecJ OB domain LJY22_02445 PF01368 DHH family LJY22_02445 PF02272 DHHA1 domain LJY22_02455 PF01336 OB-fold nucleic acid binding domain LJY22_02455 PF00152 tRNA synthetases class II (D, K and N) LJY22_02460 PF00072 Response regulator receiver domain LJY22_02460 PF00158 Sigma-54 interaction domain LJY22_02460 PF02954 Bacterial regulatory protein, Fis family LJY22_02470 PF00248 Aldo/keto reductase family LJY22_02480 PF02976 DNA mismatch repair enzyme MutH LJY22_02485 PF00293 NUDIX domain LJY22_02490 PF01590 GAF domain LJY22_02490 PF05524 PEP-utilising enzyme, N-terminal LJY22_02490 PF00391 PEP-utilising enzyme, mobile domain LJY22_02490 PF02896 PEP-utilising enzyme, TIM barrel domain LJY22_02495 PF01925 Sulfite exporter TauE/SafE LJY22_02500 PF01790 Prolipoprotein diacylglyceryl transferase LJY22_02505 PF00303 Thymidylate synthase LJY22_02515 PF02690 Na+/Pi-cotransporter LJY22_02520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_02520 PF03466 LysR substrate binding domain LJY22_02525 PF01022 Bacterial regulatory protein, arsR family LJY22_02530 PF01649 Ribosomal protein S20 LJY22_02535 PF03023 Lipid II flippase MurJ LJY22_02540 PF06574 FAD synthetase LJY22_02540 PF01687 Riboflavin kinase LJY22_02545 PF00133 tRNA synthetases class I (I, L, M and V) LJY22_02545 PF06827 Zinc finger found in FPG and IleRS LJY22_02545 PF08264 Anticodon-binding domain of tRNA LJY22_02550 PF01252 Signal peptidase (SPase) II LJY22_02555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LJY22_02560 PF02401 LytB protein LJY22_02570 PF04397 LytTr DNA-binding domain LJY22_02570 PF00072 Response regulator receiver domain LJY22_02575 PF07694 5TMR of 5TMR-LYT LJY22_02575 PF06580 Histidine kinase LJY22_02580 PF02554 Carbon starvation protein CstA LJY22_02595 PF01380 SIS domain LJY22_02600 PF03702 Anhydro-N-acetylmuramic acid kinase LJY22_02605 PF00933 Glycosyl hydrolase family 3 N terminal domain LJY22_02610 PF00793 DAHP synthetase I family LJY22_02615 PF02153 Prephenate dehydrogenase LJY22_02615 PF01817 Chorismate mutase type II LJY22_02620 PF10145 Phage-related minor tail protein LJY22_02620 PF01464 Transglycosylase SLT domain LJY22_02620 PF01551 Peptidase family M23 LJY22_02625 PF07238 PilZ domain LJY22_02630 PF00005 ABC transporter LJY22_02630 PF12848 ABC transporter LJY22_02635 PF01464 Transglycosylase SLT domain LJY22_02635 PF14718 Soluble lytic murein transglycosylase L domain LJY22_02640 PF01371 Trp repressor protein LJY22_02645 PF01931 Protein of unknown function DUF84 LJY22_02650 PF01817 Chorismate mutase type II LJY22_02650 PF00800 Prephenate dehydratase LJY22_02655 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LJY22_02660 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJY22_02660 PF01464 Transglycosylase SLT domain LJY22_02665 PF13525 Outer membrane lipoprotein LJY22_02670 PF00849 RNA pseudouridylate synthase LJY22_02670 PF01479 S4 domain LJY22_02675 PF02578 Multi-copper polyphenol oxidoreductase laccase LJY22_02680 PF07724 AAA domain (Cdc48 subfamily) LJY22_02680 PF00004 ATPase family associated with various cellular activities (AAA) LJY22_02680 PF17871 AAA lid domain LJY22_02680 PF02861 Clp amino terminal domain, pathogenicity island component LJY22_02680 PF10431 C-terminal, D2-small domain, of ClpB protein LJY22_02725 PF03411 Penicillin-insensitive murein endopeptidase LJY22_02735 PF00037 4Fe-4S binding domain LJY22_02740 PF01136 Peptidase family U32 LJY22_02740 PF16325 Peptidase family U32 C-terminal domain LJY22_02745 PF04381 Putative exonuclease, RdgC LJY22_02750 PF00072 Response regulator receiver domain LJY22_02750 PF00486 Transcriptional regulatory protein, C terminal LJY22_02755 PF00989 PAS fold LJY22_02755 PF11808 Phosphate regulon sensor protein PhoR LJY22_02755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_02755 PF00512 His Kinase A (phospho-acceptor) domain LJY22_02760 PF12849 PBP superfamily domain LJY22_02765 PF02541 Ppx/GppA phosphatase family LJY22_02770 PF02503 Polyphosphate kinase middle domain LJY22_02770 PF13090 Polyphosphate kinase C-terminal domain 2 LJY22_02770 PF17941 Polyphosphate kinase C-terminal domain 1 LJY22_02770 PF13089 Polyphosphate kinase N-terminal domain LJY22_02775 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_02780 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_02785 PF00005 ABC transporter LJY22_02790 PF01895 PhoU domain LJY22_02795 PF03976 Polyphosphate kinase 2 (PPK2) LJY22_02800 PF03932 CutC family LJY22_02805 PF10417 C-terminal domain of 1-Cys peroxiredoxin LJY22_02805 PF00578 AhpC/TSA family LJY22_02810 PF03466 LysR substrate binding domain LJY22_02810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_02815 PF01274 Malate synthase LJY22_02820 PF00463 Isocitrate lyase family LJY22_02825 PF00571 CBS domain LJY22_02835 PF02547 Queuosine biosynthesis protein LJY22_02840 PF01702 Queuine tRNA-ribosyltransferase LJY22_02845 PF02699 Preprotein translocase subunit LJY22_02850 PF07549 SecD/SecF GG Motif LJY22_02850 PF13721 SecD export protein N-terminal TM region LJY22_02850 PF02355 Protein export membrane protein LJY22_02855 PF02355 Protein export membrane protein LJY22_02855 PF07549 SecD/SecF GG Motif LJY22_02860 PF00459 Inositol monophosphatase family LJY22_02865 PF00588 SpoU rRNA Methylase family LJY22_02870 PF02082 Transcriptional regulator LJY22_02875 PF00266 Aminotransferase class-V LJY22_02880 PF01592 NifU-like N terminal domain LJY22_02885 PF01521 Iron-sulphur cluster biosynthesis LJY22_02890 PF00226 DnaJ domain LJY22_02890 PF07743 HSCB C-terminal oligomerisation domain LJY22_02895 PF00012 Hsp70 protein LJY22_02900 PF00111 2Fe-2S iron-sulfur cluster binding domain LJY22_02905 PF04384 Iron-sulphur cluster assembly LJY22_02910 PF12404 Peptidase LJY22_02910 PF00883 Cytosol aminopeptidase family, catalytic domain LJY22_02915 PF00334 Nucleoside diphosphate kinase LJY22_02920 PF04055 Radical SAM superfamily LJY22_02925 PF13464 Domain of unknown function (DUF4115) LJY22_02930 PF04551 GcpE protein LJY22_02935 PF03129 Anticodon binding domain LJY22_02935 PF13393 Histidyl-tRNA synthetase LJY22_02940 PF09976 Tetratricopeptide repeat-like domain LJY22_02945 PF13360 PQQ-like domain LJY22_02950 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LJY22_02950 PF01926 50S ribosome-binding GTPase LJY22_02965 PF02601 Exonuclease VII, large subunit LJY22_02965 PF13742 OB-fold nucleic acid binding domain LJY22_02970 PF00571 CBS domain LJY22_02970 PF00478 IMP dehydrogenase / GMP reductase domain LJY22_02975 PF00958 GMP synthase C terminal domain LJY22_02975 PF02540 NAD synthase LJY22_02975 PF00117 Glutamine amidotransferase class-I LJY22_02980 PF03553 Na+/H+ antiporter family LJY22_02985 PF06483 Chitinase C LJY22_02985 PF00704 Glycosyl hydrolases family 18 LJY22_02990 PF01184 GPR1/FUN34/yaaH family LJY22_02995 PF01235 Sodium:alanine symporter family LJY22_03000 PF01266 FAD dependent oxidoreductase LJY22_03010 PF07969 Amidohydrolase family LJY22_03015 PF01053 Cys/Met metabolism PLP-dependent enzyme LJY22_03020 PF00202 Aminotransferase class-III LJY22_03040 PF00583 Acetyltransferase (GNAT) family LJY22_03040 PF00795 Carbon-nitrogen hydrolase LJY22_03045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_03045 PF03466 LysR substrate binding domain LJY22_03085 PF00563 EAL domain LJY22_03085 PF00990 Diguanylate cyclase, GGDEF domain LJY22_03085 PF03707 Bacterial signalling protein N terminal repeat LJY22_03085 PF13188 PAS domain LJY22_03090 PF12833 Helix-turn-helix domain LJY22_03130 PF00239 Resolvase, N terminal domain LJY22_03130 PF02796 Helix-turn-helix domain of resolvase LJY22_03140 PF11867 Domain of unknown function (DUF3387) LJY22_03140 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LJY22_03140 PF18766 SWI2/SNF2 ATPase LJY22_03150 PF12161 HsdM N-terminal domain LJY22_03150 PF02384 N-6 DNA Methylase LJY22_03180 PF13356 Arm DNA-binding domain LJY22_03180 PF00589 Phage integrase family LJY22_03190 PF01668 SmpB protein LJY22_03195 PF03364 Polyketide cyclase / dehydrase and lipid transport LJY22_03200 PF03658 RnfH family Ubiquitin LJY22_03205 PF04355 SmpA / OmlA family LJY22_03210 PF02463 RecF/RecN/SMC N terminal domain LJY22_03220 PF01513 ATP-NAD kinase LJY22_03225 PF01025 GrpE LJY22_03230 PF00375 Sodium:dicarboxylate symporter family LJY22_03235 PF00012 Hsp70 protein LJY22_03240 PF01556 DnaJ C terminal domain LJY22_03240 PF00226 DnaJ domain LJY22_03240 PF00684 DnaJ central domain LJY22_03245 PF00114 Pilin (bacterial filament) LJY22_03245 PF07963 Prokaryotic N-terminal methylation motif LJY22_03250 PF07963 Prokaryotic N-terminal methylation motif LJY22_03250 PF00114 Pilin (bacterial filament) LJY22_03270 PF03806 AbgT putative transporter family LJY22_03275 PF14437 MafB19-like deaminase LJY22_03280 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJY22_03280 PF01464 Transglycosylase SLT domain LJY22_03285 PF02769 AIR synthase related protein, C-terminal domain LJY22_03285 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LJY22_03285 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LJY22_03300 PF07715 TonB-dependent Receptor Plug Domain LJY22_03300 PF00593 TonB dependent receptor LJY22_03315 PF01546 Peptidase family M20/M25/M40 LJY22_03315 PF07687 Peptidase dimerisation domain LJY22_03320 PF00860 Permease family LJY22_03325 PF00156 Phosphoribosyl transferase domain LJY22_03330 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LJY22_03335 PF07417 Sigma factor-binding transcriptional regulator Crl LJY22_03340 PF00696 Amino acid kinase family LJY22_03340 PF01472 PUA domain LJY22_03345 PF00171 Aldehyde dehydrogenase family LJY22_03350 PF03477 ATP cone domain LJY22_03355 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LJY22_03355 PF01872 RibD C-terminal domain LJY22_03360 PF00677 Lumazine binding domain LJY22_03365 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LJY22_03365 PF00925 GTP cyclohydrolase II LJY22_03370 PF00885 6,7-dimethyl-8-ribityllumazine synthase LJY22_03375 PF01029 NusB family LJY22_03380 PF02769 AIR synthase related protein, C-terminal domain LJY22_03380 PF00586 AIR synthase related protein, N-terminal domain LJY22_03385 PF04608 Phosphatidylglycerophosphatase A LJY22_03390 PF02779 Transketolase, pyrimidine binding domain LJY22_03390 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LJY22_03390 PF02780 Transketolase, C-terminal domain LJY22_03395 PF00348 Polyprenyl synthetase LJY22_03400 PF02609 Exonuclease VII small subunit LJY22_03405 PF01618 MotA/TolQ/ExbB proton channel family LJY22_03410 PF00691 OmpA family LJY22_03410 PF13677 Membrane MotB of proton-channel complex MotA/MotB LJY22_03415 PF02568 Thiamine biosynthesis protein (ThiI) LJY22_03415 PF02926 THUMP domain LJY22_03420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_03420 PF03466 LysR substrate binding domain LJY22_03430 PF04241 Protein of unknown function (DUF423) LJY22_03435 PF01728 FtsJ-like methyltransferase LJY22_03435 PF18125 RlmM ferredoxin-like domain LJY22_03440 PF01367 5'-3' exonuclease, C-terminal SAM fold LJY22_03440 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LJY22_03445 PF11892 Domain of unknown function (DUF3412) LJY22_03445 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LJY22_03445 PF03641 Possible lysine decarboxylase LJY22_03450 PF00990 Diguanylate cyclase, GGDEF domain LJY22_03460 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LJY22_03460 PF14489 QueF-like protein LJY22_03465 PF07348 Syd protein (SUKH-2) LJY22_03470 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) LJY22_03475 PF03180 NLPA lipoprotein LJY22_03480 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_03485 PF00005 ABC transporter LJY22_03485 PF09383 NIL domain LJY22_03495 PF00356 Bacterial regulatory proteins, lacI family LJY22_03500 PF00367 phosphotransferase system, EIIB LJY22_03500 PF02378 Phosphotransferase system, EIIC LJY22_03505 PF16657 Maltogenic Amylase, C-terminal domain LJY22_03505 PF00128 Alpha amylase, catalytic domain LJY22_03520 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LJY22_03520 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LJY22_03525 PF00464 Serine hydroxymethyltransferase LJY22_03530 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LJY22_03530 PF04055 Radical SAM superfamily LJY22_03535 PF03099 Biotin/lipoate A/B protein ligase family LJY22_03540 PF04359 Protein of unknown function (DUF493) LJY22_03545 PF00768 D-alanyl-D-alanine carboxypeptidase LJY22_03545 PF07943 Penicillin-binding protein 5, C-terminal domain LJY22_03550 PF05036 Sporulation related domain LJY22_03550 PF03330 Lytic transglycolase LJY22_03555 PF01098 Cell cycle protein LJY22_03560 PF00905 Penicillin binding protein transpeptidase domain LJY22_03560 PF03717 Penicillin-binding Protein dimerisation domain LJY22_03565 PF02590 Predicted SPOUT methyltransferase LJY22_03575 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LJY22_03575 PF06144 DNA polymerase III, delta subunit LJY22_03580 PF04390 Lipopolysaccharide-assembly LJY22_03585 PF08264 Anticodon-binding domain of tRNA LJY22_03585 PF13603 Leucyl-tRNA synthetase, Domain 2 LJY22_03585 PF00133 tRNA synthetases class I (I, L, M and V) LJY22_03590 PF07295 Zinc-ribbon containing domain LJY22_03595 PF00795 Carbon-nitrogen hydrolase LJY22_03600 PF03471 Transporter associated domain LJY22_03600 PF00571 CBS domain LJY22_03605 PF02130 Uncharacterized protein family UPF0054 LJY22_03610 PF02562 PhoH-like protein LJY22_03615 PF00919 Uncharacterized protein family UPF0004 LJY22_03615 PF01938 TRAM domain LJY22_03615 PF04055 Radical SAM superfamily LJY22_03620 PF01494 FAD binding domain LJY22_03725 PF01926 50S ribosome-binding GTPase LJY22_03725 PF06071 Protein of unknown function (DUF933) LJY22_03730 PF01195 Peptidyl-tRNA hydrolase LJY22_03735 PF14572 Phosphoribosyl synthetase-associated domain LJY22_03735 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LJY22_03740 PF08544 GHMP kinases C terminal LJY22_03740 PF00288 GHMP kinases N terminal domain LJY22_03745 PF03550 Outer membrane lipoprotein LolB LJY22_03750 PF01488 Shikimate / quinate 5-dehydrogenase LJY22_03750 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LJY22_03750 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LJY22_03755 PF00472 RF-1 domain LJY22_03755 PF03462 PCRF domain LJY22_03760 PF13847 Methyltransferase domain LJY22_03760 PF17827 PrmC N-terminal domain LJY22_03765 PF04247 Invasion gene expression up-regulator, SirB LJY22_03770 PF13369 Transglutaminase-like superfamily LJY22_03775 PF00793 DAHP synthetase I family LJY22_03780 PF00149 Calcineurin-like phosphoesterase LJY22_03780 PF02872 5'-nucleotidase, C-terminal domain LJY22_03785 PF04073 Aminoacyl-tRNA editing domain LJY22_03790 PF01479 S4 domain LJY22_03790 PF00849 RNA pseudouridylate synthase LJY22_03795 PF01713 Smr domain LJY22_03820 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LJY22_03820 PF03173 Putative carbohydrate binding domain LJY22_03820 PF00728 Glycosyl hydrolase family 20, catalytic domain LJY22_03820 PF02838 Glycosyl hydrolase family 20, domain 2 LJY22_03835 PF00403 Heavy-metal-associated domain LJY22_03840 PF13609 Gram-negative porin LJY22_03845 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LJY22_03850 PF00749 tRNA synthetases class I (E and Q), catalytic domain LJY22_03855 PF00691 OmpA family LJY22_03855 PF01389 OmpA-like transmembrane domain LJY22_03900 PF01584 CheW-like domain LJY22_03900 PF00072 Response regulator receiver domain LJY22_03905 PF01739 CheR methyltransferase, SAM binding domain LJY22_03905 PF03705 CheR methyltransferase, all-alpha domain LJY22_03910 PF00460 Flagella basal body rod protein LJY22_03915 PF00460 Flagella basal body rod protein LJY22_03915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJY22_03920 PF13861 FlgD Tudor-like domain LJY22_03920 PF13860 FlgD Ig-like domain LJY22_03920 PF03963 Flagellar hook capping protein - N-terminal region LJY22_03925 PF07559 Flagellar basal body protein FlaE LJY22_03925 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJY22_03925 PF00460 Flagella basal body rod protein LJY22_03930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJY22_03930 PF00460 Flagella basal body rod protein LJY22_03935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJY22_03935 PF00460 Flagella basal body rod protein LJY22_03940 PF02107 Flagellar L-ring protein LJY22_03945 PF02119 Flagellar P-ring protein LJY22_03950 PF10135 Rod binding protein LJY22_03950 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LJY22_03955 PF07196 Flagellin hook IN motif LJY22_03955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJY22_03960 PF00669 Bacterial flagellin N-terminal helical region LJY22_03965 PF00700 Bacterial flagellin C-terminal helical region LJY22_03965 PF07196 Flagellin hook IN motif LJY22_03965 PF00669 Bacterial flagellin N-terminal helical region LJY22_03970 PF00700 Bacterial flagellin C-terminal helical region LJY22_03970 PF07196 Flagellin hook IN motif LJY22_03970 PF00669 Bacterial flagellin N-terminal helical region LJY22_03975 PF07196 Flagellin hook IN motif LJY22_03975 PF00669 Bacterial flagellin N-terminal helical region LJY22_03975 PF00700 Bacterial flagellin C-terminal helical region LJY22_03980 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LJY22_03985 PF00391 PEP-utilising enzyme, mobile domain LJY22_03985 PF05524 PEP-utilising enzyme, N-terminal LJY22_03985 PF02896 PEP-utilising enzyme, TIM barrel domain LJY22_03990 PF00381 PTS HPr component phosphorylation site LJY22_03995 PF00291 Pyridoxal-phosphate dependent enzyme LJY22_04005 PF04354 ZipA, C-terminal FtsZ-binding domain LJY22_04010 PF01653 NAD-dependent DNA ligase adenylation domain LJY22_04010 PF00533 BRCA1 C Terminus (BRCT) domain LJY22_04010 PF12826 Helix-hairpin-helix motif LJY22_04010 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LJY22_04010 PF03120 NAD-dependent DNA ligase OB-fold domain LJY22_04015 PF03573 outer membrane porin, OprD family LJY22_04035 PF01145 SPFH domain / Band 7 family LJY22_04035 PF16200 C-terminal region of band_7 LJY22_04040 PF00085 Thioredoxin LJY22_04045 PF00106 short chain dehydrogenase LJY22_04050 PF01370 NAD dependent epimerase/dehydratase family LJY22_04050 PF08338 Domain of unknown function (DUF1731) LJY22_04055 PF07556 Protein of unknown function (DUF1538) LJY22_04060 PF07556 Protein of unknown function (DUF1538) LJY22_04080 PF12850 Calcineurin-like phosphoesterase superfamily domain LJY22_04095 PF17323 Trans-membrane regulatory protein ToxS LJY22_04100 PF00486 Transcriptional regulatory protein, C terminal LJY22_04105 PF00183 Hsp90 protein LJY22_04105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_04110 PF05191 Adenylate kinase, active site lid LJY22_04115 PF00762 Ferrochelatase LJY22_04120 PF00854 POT family LJY22_04125 PF02357 Transcription termination factor nusG LJY22_04130 PF00733 Asparagine synthase LJY22_04130 PF13537 Glutamine amidotransferase domain LJY22_04135 PF00999 Sodium/hydrogen exchanger family LJY22_04135 PF02254 TrkA-N domain LJY22_04140 PF01047 MarR family LJY22_04140 PF00480 ROK family LJY22_04145 PF01979 Amidohydrolase family LJY22_04150 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LJY22_04150 PF02378 Phosphotransferase system, EIIC LJY22_04150 PF00367 phosphotransferase system, EIIB LJY22_04155 PF00749 tRNA synthetases class I (E and Q), catalytic domain LJY22_04155 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LJY22_04160 PF01475 Ferric uptake regulator family LJY22_04170 PF00258 Flavodoxin LJY22_04180 PF12697 Alpha/beta hydrolase family LJY22_04185 PF03925 SeqA protein C-terminal domain LJY22_04185 PF17206 SeqA protein N-terminal domain LJY22_04190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LJY22_04190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LJY22_04190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LJY22_04190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LJY22_04200 PF01784 NIF3 (NGG1p interacting factor 3) LJY22_04205 PF00285 Citrate synthase, C-terminal domain LJY22_04210 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LJY22_04215 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LJY22_04220 PF00890 FAD binding domain LJY22_04220 PF02910 Fumarate reductase flavoprotein C-term LJY22_04225 PF13085 2Fe-2S iron-sulfur cluster binding domain LJY22_04230 PF00676 Dehydrogenase E1 component LJY22_04230 PF02779 Transketolase, pyrimidine binding domain LJY22_04230 PF16078 2-oxoglutarate dehydrogenase N-terminus LJY22_04230 PF16870 2-oxoglutarate dehydrogenase C-terminal LJY22_04235 PF02817 e3 binding domain LJY22_04235 PF00364 Biotin-requiring enzyme LJY22_04235 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LJY22_04240 PF08442 ATP-grasp domain LJY22_04240 PF00549 CoA-ligase LJY22_04245 PF02629 CoA binding domain LJY22_04245 PF00549 CoA-ligase LJY22_04250 PF00950 ABC 3 transport family LJY22_04255 PF00005 ABC transporter LJY22_04260 PF01297 Zinc-uptake complex component A periplasmic LJY22_04265 PF12833 Helix-turn-helix domain LJY22_04265 PF02311 AraC-like ligand binding domain LJY22_04270 PF04023 FeoA domain LJY22_04275 PF07664 Ferrous iron transport protein B C terminus LJY22_04275 PF17910 FeoB cytosolic helical domain LJY22_04275 PF02421 Ferrous iron transport protein B LJY22_04275 PF07670 Nucleoside recognition LJY22_04290 PF03485 Arginyl tRNA synthetase N terminal domain LJY22_04290 PF05746 DALR anticodon binding domain LJY22_04290 PF00750 tRNA synthetases class I (R) LJY22_04295 PF06185 YecM protein LJY22_04305 PF00089 Trypsin LJY22_04310 PF00551 Formyl transferase LJY22_04310 PF01842 ACT domain LJY22_04315 PF04851 Type III restriction enzyme, res subunit LJY22_04315 PF13307 Helicase C-terminal domain LJY22_04320 PF00814 Glycoprotease family LJY22_04330 PF03843 Outer membrane lipoprotein Slp family LJY22_04335 PF00561 alpha/beta hydrolase fold LJY22_04340 PF00501 AMP-binding enzyme LJY22_04340 PF13193 AMP-binding enzyme C-terminal domain LJY22_04345 PF01612 3'-5' exonuclease LJY22_04345 PF00570 HRDC domain LJY22_04350 PF03776 Septum formation topological specificity factor MinE LJY22_04355 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LJY22_04360 PF03775 Septum formation inhibitor MinC, C-terminal domain LJY22_04360 PF05209 Septum formation inhibitor MinC, N-terminal domain LJY22_04365 PF05166 YcgL domain LJY22_04370 PF13406 Transglycosylase SLT domain LJY22_04375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_04375 PF03466 LysR substrate binding domain LJY22_04380 PF07670 Nucleoside recognition LJY22_04380 PF07662 Na+ dependent nucleoside transporter C-terminus LJY22_04380 PF01773 Na+ dependent nucleoside transporter N-terminus LJY22_04385 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LJY22_04385 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LJY22_04400 PF00109 Beta-ketoacyl synthase, N-terminal domain LJY22_04400 PF02801 Beta-ketoacyl synthase, C-terminal domain LJY22_04410 PF07977 FabA-like domain LJY22_04415 PF00109 Beta-ketoacyl synthase, N-terminal domain LJY22_04415 PF02801 Beta-ketoacyl synthase, C-terminal domain LJY22_04440 PF00221 Aromatic amino acid lyase LJY22_04445 PF00535 Glycosyl transferase family 2 LJY22_04450 PF07977 FabA-like domain LJY22_04465 PF00550 Phosphopantetheine attachment site LJY22_04470 PF00550 Phosphopantetheine attachment site LJY22_04495 PF04820 Tryptophan halogenase LJY22_04505 PF00571 CBS domain LJY22_04505 PF03471 Transporter associated domain LJY22_04505 PF01595 Cyclin M transmembrane N-terminal domain LJY22_04510 PF00270 DEAD/DEAH box helicase LJY22_04510 PF00271 Helicase conserved C-terminal domain LJY22_04515 PF02080 TrkA-C domain LJY22_04515 PF02254 TrkA-N domain LJY22_04520 PF02386 Cation transport protein LJY22_04535 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LJY22_04540 PF03480 Bacterial extracellular solute-binding protein, family 7 LJY22_04545 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LJY22_04550 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LJY22_04560 PF02954 Bacterial regulatory protein, Fis family LJY22_04560 PF00072 Response regulator receiver domain LJY22_04560 PF00158 Sigma-54 interaction domain LJY22_04565 PF02743 Cache domain LJY22_04565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_04565 PF00512 His Kinase A (phospho-acceptor) domain LJY22_04575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LJY22_04575 PF05698 Bacterial trigger factor protein (TF) C-terminus LJY22_04575 PF05697 Bacterial trigger factor protein (TF) LJY22_04580 PF00574 Clp protease LJY22_04585 PF10431 C-terminal, D2-small domain, of ClpB protein LJY22_04585 PF06689 ClpX C4-type zinc finger LJY22_04585 PF07724 AAA domain (Cdc48 subfamily) LJY22_04590 PF00004 ATPase family associated with various cellular activities (AAA) LJY22_04590 PF02190 ATP-dependent protease La (LON) substrate-binding domain LJY22_04590 PF05362 Lon protease (S16) C-terminal proteolytic domain LJY22_04595 PF00216 Bacterial DNA-binding protein LJY22_04600 PF13145 PPIC-type PPIASE domain LJY22_04620 PF01966 HD domain LJY22_04620 PF13286 Phosphohydrolase-associated domain LJY22_04630 PF00155 Aminotransferase class I and II LJY22_04635 PF00425 chorismate binding enzyme LJY22_04640 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LJY22_04640 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LJY22_04640 PF16582 Middle domain of thiamine pyrophosphate LJY22_04645 PF12697 Alpha/beta hydrolase family LJY22_04650 PF00378 Enoyl-CoA hydratase/isomerase LJY22_04655 PF13378 Enolase C-terminal domain-like LJY22_04660 PF00501 AMP-binding enzyme LJY22_04660 PF13193 AMP-binding enzyme C-terminal domain LJY22_04670 PF03601 Conserved hypothetical protein 698 LJY22_04675 PF07690 Major Facilitator Superfamily LJY22_04720 PF00529 HlyD membrane-fusion protein of T1SS LJY22_04720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJY22_04725 PF00873 AcrB/AcrD/AcrF family LJY22_04745 PF00291 Pyridoxal-phosphate dependent enzyme LJY22_04750 PF13404 AsnC-type helix-turn-helix domain LJY22_04750 PF01037 Lrp/AsnC ligand binding domain LJY22_04765 PF09619 Type III secretion system lipoprotein chaperone (YscW) LJY22_04770 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LJY22_04780 PF00990 Diguanylate cyclase, GGDEF domain LJY22_04825 PF12161 HsdM N-terminal domain LJY22_04825 PF02384 N-6 DNA Methylase LJY22_04830 PF01420 Type I restriction modification DNA specificity domain LJY22_04835 PF04851 Type III restriction enzyme, res subunit LJY22_04835 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) LJY22_04835 PF08463 EcoEI R protein C-terminal LJY22_04835 PF00271 Helicase conserved C-terminal domain LJY22_04890 PF02899 Phage integrase, N-terminal SAM-like domain LJY22_04890 PF00589 Phage integrase family LJY22_04915 PF00588 SpoU rRNA Methylase family LJY22_04915 PF08032 RNA 2'-O ribose methyltransferase substrate binding LJY22_04920 PF00571 CBS domain LJY22_04920 PF00478 IMP dehydrogenase / GMP reductase domain LJY22_04925 PF00403 Heavy-metal-associated domain LJY22_04930 PF01048 Phosphorylase superfamily LJY22_04940 PF00672 HAMP domain LJY22_04940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_04945 PF01230 HIT domain LJY22_04960 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LJY22_04960 PF13036 Peptidoglycan-synthase activator LpoB LJY22_04965 PF01636 Phosphotransferase enzyme family LJY22_04970 PF05728 Uncharacterised protein family (UPF0227) LJY22_04975 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_04990 PF02559 CarD-like/TRCF domain LJY22_04990 PF00270 DEAD/DEAH box helicase LJY22_04990 PF00271 Helicase conserved C-terminal domain LJY22_04990 PF03461 TRCF domain LJY22_04990 PF17757 UvrB interaction domain LJY22_05000 PF02687 FtsX-like permease family LJY22_05000 PF12704 MacB-like periplasmic core domain LJY22_05005 PF00005 ABC transporter LJY22_05010 PF12704 MacB-like periplasmic core domain LJY22_05010 PF02687 FtsX-like permease family LJY22_05020 PF03772 Competence protein LJY22_05020 PF13567 Domain of unknown function (DUF4131) LJY22_05020 PF00753 Metallo-beta-lactamase superfamily LJY22_05025 PF00664 ABC transporter transmembrane region LJY22_05025 PF00005 ABC transporter LJY22_05030 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LJY22_05035 PF03966 Trm112p-like protein LJY22_05040 PF02348 Cytidylyltransferase LJY22_05045 PF04293 SpoVR like protein LJY22_05050 PF04285 Protein of unknown function (DUF444) LJY22_05055 PF08298 PrkA AAA domain LJY22_05055 PF06798 PrkA serine protein kinase C-terminal domain LJY22_05060 PF03887 YfbU domain LJY22_05070 PF04055 Radical SAM superfamily LJY22_05080 PF01228 Glycine radical LJY22_05080 PF02901 Pyruvate formate lyase-like LJY22_05095 PF00005 ABC transporter LJY22_05100 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJY22_05105 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_05110 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_05120 PF03372 Endonuclease/Exonuclease/phosphatase family LJY22_05125 PF10689 Protein of unknown function (DUF2496) LJY22_05130 PF07445 Primosomal replication protein priC LJY22_05135 PF01925 Sulfite exporter TauE/SafE LJY22_05140 PF06733 DEAD_2 LJY22_05140 PF13307 Helicase C-terminal domain LJY22_05150 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LJY22_05155 PF00849 RNA pseudouridylate synthase LJY22_05160 PF03971 Monomeric isocitrate dehydrogenase LJY22_05165 PF00313 'Cold-shock' DNA-binding domain LJY22_05170 PF02617 ATP-dependent Clp protease adaptor protein ClpS LJY22_05175 PF00004 ATPase family associated with various cellular activities (AAA) LJY22_05175 PF10431 C-terminal, D2-small domain, of ClpB protein LJY22_05175 PF02861 Clp amino terminal domain, pathogenicity island component LJY22_05175 PF17871 AAA lid domain LJY22_05175 PF07724 AAA domain (Cdc48 subfamily) LJY22_05180 PF01176 Translation initiation factor 1A / IF-1 LJY22_05185 PF04377 Arginine-tRNA-protein transferase, C terminus LJY22_05185 PF04376 Arginine-tRNA-protein transferase, N terminus LJY22_05190 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LJY22_05200 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LJY22_05205 PF10692 Protein of unknown function (DUF2498) LJY22_05210 PF01396 Topoisomerase DNA binding C4 zinc finger LJY22_05210 PF01751 Toprim domain LJY22_05210 PF01131 DNA topoisomerase LJY22_05210 PF08272 Topoisomerase I zinc-ribbon-like LJY22_05215 PF00483 Nucleotidyl transferase LJY22_05220 PF08323 Starch synthase catalytic domain LJY22_05220 PF00534 Glycosyl transferases group 1 LJY22_05240 PF04993 TfoX N-terminal domain LJY22_05240 PF04994 TfoX C-terminal domain LJY22_05245 PF00356 Bacterial regulatory proteins, lacI family LJY22_05250 PF02613 Nitrate reductase delta subunit LJY22_05255 PF00072 Response regulator receiver domain LJY22_05255 PF00486 Transcriptional regulatory protein, C terminal LJY22_05260 PF02698 DUF218 domain LJY22_05265 PF13847 Methyltransferase domain LJY22_05270 PF03882 MukF winged-helix domain LJY22_05270 PF17193 MukF C-terminal domain LJY22_05270 PF17192 MukF middle domain LJY22_05275 PF04288 MukE-like family LJY22_05280 PF16330 MukB hinge domain LJY22_05280 PF04310 MukB N-terminal LJY22_05300 PF08443 RimK-like ATP-grasp domain LJY22_05300 PF18030 RimK PreATP-grasp domain LJY22_05305 PF08003 Protein of unknown function (DUF1698) LJY22_05310 PF13649 Methyltransferase domain LJY22_05315 PF01904 Protein of unknown function DUF72 LJY22_05320 PF00152 tRNA synthetases class II (D, K and N) LJY22_05320 PF01336 OB-fold nucleic acid binding domain LJY22_05320 PF02938 GAD domain LJY22_05325 PF01709 Transcriptional regulator LJY22_05330 PF02075 Crossover junction endodeoxyribonuclease RuvC LJY22_05335 PF01330 RuvA N terminal domain LJY22_05335 PF07499 RuvA, C-terminal domain LJY22_05340 PF17864 RuvB AAA lid domain LJY22_05340 PF05491 RuvB C-terminal winged helix domain LJY22_05340 PF05496 Holliday junction DNA helicase RuvB P-loop domain LJY22_05345 PF01654 Cytochrome bd terminal oxidase subunit I LJY22_05350 PF02322 Cytochrome bd terminal oxidase subunit II LJY22_05355 PF08173 Membrane bound YbgT-like protein LJY22_05365 PF03061 Thioesterase superfamily LJY22_05370 PF01618 MotA/TolQ/ExbB proton channel family LJY22_05375 PF02472 Biopolymer transport protein ExbD/TolR LJY22_05385 PF07676 WD40-like Beta Propeller Repeat LJY22_05385 PF04052 TolB amino-terminal domain LJY22_05390 PF00691 OmpA family LJY22_05395 PF13174 Tetratricopeptide repeat LJY22_05395 PF16331 TolA binding protein trimerisation LJY22_05400 PF02445 Quinolinate synthetase A protein LJY22_05410 PF03994 Domain of Unknown Function (DUF350) LJY22_05420 PF03738 Glutathionylspermidine synthase preATP-grasp LJY22_05430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_05430 PF09308 LuxQ, periplasmic LJY22_05430 PF00512 His Kinase A (phospho-acceptor) domain LJY22_05430 PF00072 Response regulator receiver domain LJY22_05435 PF06610 L-alanine exporter LJY22_05445 PF00672 HAMP domain LJY22_05445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_05450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJY22_05450 PF00529 HlyD membrane-fusion protein of T1SS LJY22_05455 PF00873 AcrB/AcrD/AcrF family LJY22_05470 PF00579 tRNA synthetases class I (W and Y) LJY22_05480 PF03372 Endonuclease/Exonuclease/phosphatase family LJY22_05490 PF12729 Four helix bundle sensory module for signal transduction LJY22_05490 PF00672 HAMP domain LJY22_05490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_05495 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LJY22_05505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_05505 PF03466 LysR substrate binding domain LJY22_05515 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LJY22_05515 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LJY22_05520 PF01037 Lrp/AsnC ligand binding domain LJY22_05525 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LJY22_05525 PF17854 FtsK alpha domain LJY22_05525 PF09397 Ftsk gamma domain LJY22_05525 PF01580 FtsK/SpoIIIE family LJY22_05530 PF03548 Outer membrane lipoprotein carrier protein LolA LJY22_05535 PF12002 MgsA AAA+ ATPase C terminal LJY22_05535 PF16193 AAA C-terminal domain LJY22_05535 PF00004 ATPase family associated with various cellular activities (AAA) LJY22_05540 PF02403 Seryl-tRNA synthetase N-terminal domain LJY22_05540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LJY22_05555 PF00202 Aminotransferase class-III LJY22_05560 PF06968 Biotin and Thiamin Synthesis associated domain LJY22_05560 PF04055 Radical SAM superfamily LJY22_05565 PF00155 Aminotransferase class I and II LJY22_05570 PF12697 Alpha/beta hydrolase family LJY22_05570 PF08241 Methyltransferase domain LJY22_05585 PF01435 Peptidase family M48 LJY22_05595 PF00106 short chain dehydrogenase LJY22_05620 PF16036 Chalcone isomerase-like LJY22_05630 PF08328 Adenylosuccinate lyase C-terminal LJY22_05630 PF00206 Lyase LJY22_05635 PF04356 Protein of unknown function (DUF489) LJY22_05650 PF00294 pfkB family carbohydrate kinase LJY22_05655 PF00816 H-NS histone family LJY22_05660 PF03553 Na+/H+ antiporter family LJY22_05665 PF00072 Response regulator receiver domain LJY22_05665 PF02954 Bacterial regulatory protein, Fis family LJY22_05665 PF00158 Sigma-54 interaction domain LJY22_05670 PF01634 ATP phosphoribosyltransferase LJY22_05670 PF08029 HisG, C-terminal domain LJY22_05675 PF00815 Histidinol dehydrogenase LJY22_05680 PF00155 Aminotransferase class I and II LJY22_05685 PF00475 Imidazoleglycerol-phosphate dehydratase LJY22_05685 PF08645 Polynucleotide kinase 3 phosphatase LJY22_05690 PF00117 Glutamine amidotransferase class-I LJY22_05695 PF00977 Histidine biosynthesis protein LJY22_05700 PF00977 Histidine biosynthesis protein LJY22_05705 PF01502 Phosphoribosyl-AMP cyclohydrolase LJY22_05705 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LJY22_05710 PF02810 SEC-C motif LJY22_05715 PF08668 HDOD domain LJY22_05715 PF00563 EAL domain LJY22_05720 PF00149 Calcineurin-like phosphoesterase LJY22_05725 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LJY22_05730 PF09190 DALR domain LJY22_05730 PF01406 tRNA synthetases class I (C) catalytic domain LJY22_05735 PF00265 Thymidine kinase LJY22_05740 PF02698 DUF218 domain LJY22_05765 PF01226 Formate/nitrite transporter LJY22_05775 PF03649 Uncharacterised protein family (UPF0014) LJY22_05780 PF06796 Periplasmic nitrate reductase protein NapE LJY22_05785 PF03264 NapC/NirT cytochrome c family, N-terminal region LJY22_05790 PF01568 Molydopterin dinucleotide binding domain LJY22_05790 PF18364 Molybdopterin oxidoreductase N-terminal domain LJY22_05790 PF00384 Molybdopterin oxidoreductase LJY22_05795 PF16874 Glycosyl hydrolase family 36 C-terminal domain LJY22_05795 PF16875 Glycosyl hydrolase family 36 N-terminal domain LJY22_05805 PF01368 DHH family LJY22_05805 PF02833 DHHA2 domain LJY22_05815 PF00005 ABC transporter LJY22_05820 PF00005 ABC transporter LJY22_05820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJY22_05825 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_05825 PF12911 N-terminal TM domain of oligopeptide transport permease C LJY22_05830 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_05835 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJY22_05840 PF02954 Bacterial regulatory protein, Fis family LJY22_05840 PF00158 Sigma-54 interaction domain LJY22_05845 PF04012 PspA/IM30 family LJY22_05850 PF06667 Phage shock protein B LJY22_05855 PF04024 PspC domain LJY22_05865 PF13533 Biotin-lipoyl like LJY22_05870 PF00873 AcrB/AcrD/AcrF family LJY22_05875 PF03352 Methyladenine glycosylase LJY22_05880 PF03280 Proteobacterial lipase chaperone protein LJY22_05885 PF00561 alpha/beta hydrolase fold LJY22_05890 PF01053 Cys/Met metabolism PLP-dependent enzyme LJY22_05895 PF13091 PLD-like domain LJY22_05895 PF13396 Phospholipase_D-nuclease N-terminal LJY22_05900 PF00209 Sodium:neurotransmitter symporter family LJY22_05905 PF00849 RNA pseudouridylate synthase LJY22_05915 PF00970 Oxidoreductase FAD-binding domain LJY22_05915 PF00111 2Fe-2S iron-sulfur cluster binding domain LJY22_05915 PF00175 Oxidoreductase NAD-binding domain LJY22_05920 PF03063 Prismane/CO dehydrogenase family LJY22_05925 PF01590 GAF domain LJY22_05925 PF00158 Sigma-54 interaction domain LJY22_05935 PF01066 CDP-alcohol phosphatidyltransferase LJY22_05940 PF00005 ABC transporter LJY22_05945 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_05950 PF13416 Bacterial extracellular solute-binding protein LJY22_05960 PF06945 Protein of unknown function (DUF1289) LJY22_05970 PF02872 5'-nucleotidase, C-terminal domain LJY22_05970 PF00149 Calcineurin-like phosphoesterase LJY22_05975 PF00583 Acetyltransferase (GNAT) family LJY22_05980 PF01386 Ribosomal L25p family LJY22_05985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_05990 PF00072 Response regulator receiver domain LJY22_05990 PF00486 Transcriptional regulatory protein, C terminal LJY22_06000 PF04851 Type III restriction enzyme, res subunit LJY22_06000 PF00271 Helicase conserved C-terminal domain LJY22_06005 PF00849 RNA pseudouridylate synthase LJY22_06005 PF01479 S4 domain LJY22_06010 PF07690 Major Facilitator Superfamily LJY22_06025 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) LJY22_06040 PF03264 NapC/NirT cytochrome c family, N-terminal region LJY22_06045 PF11066 Protein of unknown function (DUF2867) LJY22_06045 PF13460 NAD(P)H-binding LJY22_06050 PF01554 MatE LJY22_06055 PF00005 ABC transporter LJY22_06070 PF06965 Na+/H+ antiporter 1 LJY22_06075 PF16295 Tetracyclin repressor-like, C-terminal domain LJY22_06075 PF00440 Bacterial regulatory proteins, tetR family LJY22_06080 PF02770 Acyl-CoA dehydrogenase, middle domain LJY22_06080 PF09317 Domain of unknown function (DUF1974) LJY22_06080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LJY22_06080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LJY22_06085 PF07055 Enoyl reductase FAD binding domain LJY22_06085 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LJY22_06085 PF12241 Trans-2-enoyl-CoA reductase catalytic region LJY22_06090 PF06826 Predicted Permease Membrane Region LJY22_06090 PF02080 TrkA-C domain LJY22_06095 PF00462 Glutaredoxin LJY22_06100 PF00465 Iron-containing alcohol dehydrogenase LJY22_06105 PF01418 Helix-turn-helix domain, rpiR family LJY22_06105 PF01380 SIS domain LJY22_06110 PF00282 Pyridoxal-dependent decarboxylase conserved domain LJY22_06120 PF03956 Lysine exporter LysO LJY22_06130 PF04994 TfoX C-terminal domain LJY22_06130 PF04993 TfoX N-terminal domain LJY22_06145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_06145 PF00512 His Kinase A (phospho-acceptor) domain LJY22_06145 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJY22_06155 PF00266 Aminotransferase class-V LJY22_06160 PF00291 Pyridoxal-phosphate dependent enzyme LJY22_06165 PF00664 ABC transporter transmembrane region LJY22_06165 PF00005 ABC transporter LJY22_06170 PF00664 ABC transporter transmembrane region LJY22_06170 PF00005 ABC transporter LJY22_06175 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_06185 PF00266 Aminotransferase class-V LJY22_06195 PF00990 Diguanylate cyclase, GGDEF domain LJY22_06195 PF00072 Response regulator receiver domain LJY22_06200 PF00939 Sodium:sulfate symporter transmembrane region LJY22_06205 PF02698 DUF218 domain LJY22_06210 PF00390 Malic enzyme, N-terminal domain LJY22_06210 PF03949 Malic enzyme, NAD binding domain LJY22_06215 PF00271 Helicase conserved C-terminal domain LJY22_06215 PF08482 ATP-dependent helicase C-terminal LJY22_06215 PF00270 DEAD/DEAH box helicase LJY22_06215 PF04408 Helicase associated domain (HA2) LJY22_06225 PF09423 PhoD-like phosphatase LJY22_06225 PF16655 PhoD-like phosphatase, N-terminal domain LJY22_06230 PF01259 SAICAR synthetase LJY22_06250 PF00691 OmpA family LJY22_06250 PF05736 OprF membrane domain LJY22_06265 PF02913 FAD linked oxidases, C-terminal domain LJY22_06265 PF01565 FAD binding domain LJY22_06265 PF13183 4Fe-4S dicluster domain LJY22_06270 PF04191 Phospholipid methyltransferase LJY22_06280 PF00221 Aromatic amino acid lyase LJY22_06285 PF17391 Urocanase N-terminal domain LJY22_06285 PF17392 Urocanase C-terminal domain LJY22_06285 PF01175 Urocanase Rossmann-like domain LJY22_06290 PF00491 Arginase family LJY22_06295 PF01979 Amidohydrolase family LJY22_06300 PF00392 Bacterial regulatory proteins, gntR family LJY22_06300 PF07702 UTRA domain LJY22_06315 PF03129 Anticodon binding domain LJY22_06315 PF02824 TGS domain LJY22_06315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LJY22_06315 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LJY22_06320 PF00707 Translation initiation factor IF-3, C-terminal domain LJY22_06320 PF05198 Translation initiation factor IF-3, N-terminal domain LJY22_06325 PF01632 Ribosomal protein L35 LJY22_06330 PF00453 Ribosomal protein L20 LJY22_06335 PF01906 Putative heavy-metal-binding LJY22_06365 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LJY22_06365 PF01409 tRNA synthetases class II core domain (F) LJY22_06370 PF03483 B3/4 domain LJY22_06370 PF03484 tRNA synthetase B5 domain LJY22_06370 PF03147 Ferredoxin-fold anticodon binding domain LJY22_06370 PF01588 Putative tRNA binding domain LJY22_06370 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LJY22_06380 PF00216 Bacterial DNA-binding protein LJY22_06390 PF05724 Thiopurine S-methyltransferase (TPMT) LJY22_06395 PF02222 ATP-grasp domain LJY22_06400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LJY22_06400 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LJY22_06405 PF04172 LrgB-like family LJY22_06410 PF03788 LrgA family LJY22_06415 PF08411 Exonuclease C-terminal LJY22_06415 PF00929 Exonuclease LJY22_06420 PF00375 Sodium:dicarboxylate symporter family LJY22_06430 PF02277 Phosphoribosyltransferase LJY22_06435 PF02654 Cobalamin-5-phosphate synthase LJY22_06440 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LJY22_06455 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LJY22_06460 PF01032 FecCD transport family LJY22_06465 PF00005 ABC transporter LJY22_06485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_06485 PF03466 LysR substrate binding domain LJY22_06495 PF01863 Protein of unknown function DUF45 LJY22_06500 PF05971 RNA methyltransferase LJY22_06520 PF00392 Bacterial regulatory proteins, gntR family LJY22_06525 PF00171 Aldehyde dehydrogenase family LJY22_06530 PF05544 Proline racemase LJY22_06535 PF01266 FAD dependent oxidoreductase LJY22_06535 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LJY22_06545 PF02423 Ornithine cyclodeaminase/mu-crystallin family LJY22_06550 PF00701 Dihydrodipicolinate synthetase family LJY22_06555 PF00005 ABC transporter LJY22_06555 PF08402 TOBE domain LJY22_06565 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_06580 PF08453 Peptidase family M9 N-terminal LJY22_06580 PF01752 Collagenase LJY22_06590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJY22_06590 PF00005 ABC transporter LJY22_06595 PF00005 ABC transporter LJY22_06595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJY22_06600 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_06600 PF12911 N-terminal TM domain of oligopeptide transport permease C LJY22_06605 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_06610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJY22_06615 PF07687 Peptidase dimerisation domain LJY22_06615 PF01546 Peptidase family M20/M25/M40 LJY22_06620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJY22_06625 PF04209 homogentisate 1,2-dioxygenase LJY22_06635 PF02798 Glutathione S-transferase, N-terminal domain LJY22_06635 PF14497 Glutathione S-transferase, C-terminal domain LJY22_06670 PF00563 EAL domain LJY22_06670 PF12792 CSS motif domain associated with EAL LJY22_06680 PF01047 MarR family LJY22_06685 PF04237 YjbR LJY22_06700 PF00132 Bacterial transferase hexapeptide (six repeats) LJY22_06700 PF12464 Maltose acetyltransferase LJY22_06715 PF01627 Hpt domain LJY22_06715 PF00072 Response regulator receiver domain LJY22_06715 PF00512 His Kinase A (phospho-acceptor) domain LJY22_06715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LJY22_06715 PF00672 HAMP domain LJY22_06715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_06720 PF00563 EAL domain LJY22_06720 PF03707 Bacterial signalling protein N terminal repeat LJY22_06720 PF00990 Diguanylate cyclase, GGDEF domain LJY22_06735 PF04204 Homoserine O-succinyltransferase LJY22_06745 PF00893 Small Multidrug Resistance protein LJY22_06750 PF13520 Amino acid permease LJY22_06755 PF03279 Bacterial lipid A biosynthesis acyltransferase LJY22_06760 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LJY22_06765 PF01810 LysE type translocator LJY22_06775 PF01235 Sodium:alanine symporter family LJY22_06805 PF00884 Sulfatase LJY22_06810 PF00512 His Kinase A (phospho-acceptor) domain LJY22_06810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_06810 PF08521 Two-component sensor kinase N-terminal LJY22_06815 PF00486 Transcriptional regulatory protein, C terminal LJY22_06815 PF00072 Response regulator receiver domain LJY22_06825 PF00106 short chain dehydrogenase LJY22_06835 PF00501 AMP-binding enzyme LJY22_06845 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LJY22_06850 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_06855 PF00571 CBS domain LJY22_06855 PF00005 ABC transporter LJY22_06870 PF02028 BCCT, betaine/carnitine/choline family transporter LJY22_06875 PF00583 Acetyltransferase (GNAT) family LJY22_06880 PF00202 Aminotransferase class-III LJY22_06885 PF06339 Ectoine synthase LJY22_06890 PF00696 Amino acid kinase family LJY22_06890 PF13840 ACT domain LJY22_06895 PF00884 Sulfatase LJY22_06905 PF03781 Sulfatase-modifying factor enzyme 1 LJY22_06910 PF04055 Radical SAM superfamily LJY22_06910 PF13186 Iron-sulfur cluster-binding domain LJY22_06925 PF00455 DeoR C terminal sensor domain LJY22_06925 PF08220 DeoR-like helix-turn-helix domain LJY22_06930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LJY22_06930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LJY22_06935 PF03928 Haem-degrading LJY22_06940 PF00072 Response regulator receiver domain LJY22_06940 PF00990 Diguanylate cyclase, GGDEF domain LJY22_06960 PF00939 Sodium:sulfate symporter transmembrane region LJY22_06965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_06965 PF00512 His Kinase A (phospho-acceptor) domain LJY22_06970 PF00158 Sigma-54 interaction domain LJY22_06970 PF00072 Response regulator receiver domain LJY22_06970 PF02954 Bacterial regulatory protein, Fis family LJY22_06975 PF00990 Diguanylate cyclase, GGDEF domain LJY22_06975 PF03707 Bacterial signalling protein N terminal repeat LJY22_06975 PF00563 EAL domain LJY22_06980 PF01966 HD domain LJY22_06980 PF11871 Domain of unknown function (DUF3391) LJY22_06985 PF01810 LysE type translocator LJY22_06990 PF11230 Protein of unknown function (DUF3029) LJY22_06995 PF04055 Radical SAM superfamily LJY22_07005 PF03741 Integral membrane protein TerC family LJY22_07015 PF01966 HD domain LJY22_07020 PF00465 Iron-containing alcohol dehydrogenase LJY22_07025 PF03222 Tryptophan/tyrosine permease family LJY22_07040 PF00005 ABC transporter LJY22_07045 PF01497 Periplasmic binding protein LJY22_07050 PF01032 FecCD transport family LJY22_07055 PF07715 TonB-dependent Receptor Plug Domain LJY22_07055 PF00593 TonB dependent receptor LJY22_07065 PF00664 ABC transporter transmembrane region LJY22_07065 PF00005 ABC transporter LJY22_07070 PF00005 ABC transporter LJY22_07070 PF00664 ABC transporter transmembrane region LJY22_07075 PF07963 Prokaryotic N-terminal methylation motif LJY22_07095 PF00012 Hsp70 protein LJY22_07100 PF00012 Hsp70 protein LJY22_07110 PF00990 Diguanylate cyclase, GGDEF domain LJY22_07145 PF02525 Flavodoxin-like fold LJY22_07150 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LJY22_07150 PF00270 DEAD/DEAH box helicase LJY22_07150 PF04408 Helicase associated domain (HA2) LJY22_07150 PF11898 Domain of unknown function (DUF3418) LJY22_07150 PF00271 Helicase conserved C-terminal domain LJY22_07165 PF02028 BCCT, betaine/carnitine/choline family transporter LJY22_07175 PF02397 Bacterial sugar transferase LJY22_07185 PF13439 Glycosyltransferase Family 4 LJY22_07185 PF00534 Glycosyl transferases group 1 LJY22_07215 PF13439 Glycosyltransferase Family 4 LJY22_07215 PF00534 Glycosyl transferases group 1 LJY22_07220 PF13439 Glycosyltransferase Family 4 LJY22_07220 PF00534 Glycosyl transferases group 1 LJY22_07225 PF02954 Bacterial regulatory protein, Fis family LJY22_07225 PF00072 Response regulator receiver domain LJY22_07225 PF00158 Sigma-54 interaction domain LJY22_07240 PF10531 SLBB domain LJY22_07240 PF02563 Polysaccharide biosynthesis/export protein LJY22_07250 PF01740 STAS domain LJY22_07255 PF01068 ATP dependent DNA ligase domain LJY22_07255 PF14743 DNA ligase OB-like domain LJY22_07265 PF01554 MatE LJY22_07270 PF00677 Lumazine binding domain LJY22_07280 PF03881 Fructosamine kinase LJY22_07285 PF00072 Response regulator receiver domain LJY22_07285 PF01339 CheB methylesterase LJY22_07290 PF00990 Diguanylate cyclase, GGDEF domain LJY22_07290 PF05230 MASE2 domain LJY22_07300 PF00877 NlpC/P60 family LJY22_07305 PF02743 Cache domain LJY22_07305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_07305 PF00672 HAMP domain LJY22_07340 PF03942 DTW domain LJY22_07345 PF00480 ROK family LJY22_07355 PF00994 Probable molybdopterin binding domain LJY22_07355 PF03454 MoeA C-terminal region (domain IV) LJY22_07355 PF03453 MoeA N-terminal region (domain I and II) LJY22_07360 PF12804 MobA-like NTP transferase domain LJY22_07365 PF08402 TOBE domain LJY22_07365 PF00005 ABC transporter LJY22_07370 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_07375 PF12849 PBP superfamily domain LJY22_07380 PF02954 Bacterial regulatory protein, Fis family LJY22_07380 PF00072 Response regulator receiver domain LJY22_07380 PF00158 Sigma-54 interaction domain LJY22_07385 PF00512 His Kinase A (phospho-acceptor) domain LJY22_07385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_07390 PF12848 ABC transporter LJY22_07390 PF00005 ABC transporter LJY22_07395 PF02634 FdhD/NarQ family LJY22_07415 PF02613 Nitrate reductase delta subunit LJY22_07425 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LJY22_07425 PF00384 Molybdopterin oxidoreductase LJY22_07425 PF01568 Molydopterin dinucleotide binding domain LJY22_07430 PF13247 4Fe-4S dicluster domain LJY22_07445 PF05593 RHS Repeat LJY22_07445 PF03527 RHS protein LJY22_07455 PF00909 Ammonium Transporter Family LJY22_07465 PF02146 Sir2 family LJY22_07470 PF13416 Bacterial extracellular solute-binding protein LJY22_07475 PF13416 Bacterial extracellular solute-binding protein LJY22_07480 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_07485 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_07490 PF00005 ABC transporter LJY22_07490 PF08402 TOBE domain LJY22_07510 PF01171 PP-loop family LJY22_07515 PF00582 Universal stress protein family LJY22_07520 PF00027 Cyclic nucleotide-binding domain LJY22_07520 PF13545 Crp-like helix-turn-helix domain LJY22_07535 PF00403 Heavy-metal-associated domain LJY22_07545 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LJY22_07545 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LJY22_07560 PF00115 Cytochrome C and Quinol oxidase polypeptide I LJY22_07575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_07575 PF00512 His Kinase A (phospho-acceptor) domain LJY22_07575 PF09308 LuxQ, periplasmic LJY22_07575 PF00072 Response regulator receiver domain LJY22_07665 PF06303 MatP N-terminal domain LJY22_07665 PF17414 MatP C-terminal ribbon-helix-helix domain LJY22_07670 PF13654 AAA domain LJY22_07670 PF05362 Lon protease (S16) C-terminal proteolytic domain LJY22_07675 PF07977 FabA-like domain LJY22_07680 PF04957 Ribosome modulation factor LJY22_07690 PF16326 ABC transporter C-terminal domain LJY22_07690 PF12848 ABC transporter LJY22_07690 PF00005 ABC transporter LJY22_07700 PF10672 S-adenosylmethionine-dependent methyltransferase LJY22_07700 PF02926 THUMP domain LJY22_07700 PF01170 Putative RNA methylase family UPF0020 LJY22_07705 PF07126 Cell-division protein ZapC LJY22_07710 PF01180 Dihydroorotate dehydrogenase LJY22_07715 PF05088 Bacterial NAD-glutamate dehydrogenase LJY22_07725 PF11940 Domain of unknown function (DUF3458) Ig-like fold LJY22_07725 PF01433 Peptidase family M1 domain LJY22_07725 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LJY22_07735 PF00595 PDZ domain LJY22_07735 PF03572 Peptidase family S41 LJY22_07735 PF17804 Tail specific protease N-terminal domain LJY22_07735 PF11818 C-terminal domain of tail specific protease (DUF3340) LJY22_07740 PF04352 ProQ/FINO family LJY22_07740 PF17516 ProQ C-terminal domain LJY22_07745 PF13185 GAF domain LJY22_07750 PF00664 ABC transporter transmembrane region LJY22_07750 PF00005 ABC transporter LJY22_07755 PF04403 Paraquat-inducible protein A LJY22_07760 PF02470 MlaD protein LJY22_07765 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LJY22_07765 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LJY22_07765 PF01189 16S rRNA methyltransferase RsmB/F LJY22_07785 PF00793 DAHP synthetase I family LJY22_07790 PF04461 Protein of unknown function (DUF520) LJY22_07795 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LJY22_07795 PF14824 Sirohaem biosynthesis protein central LJY22_07795 PF10414 Sirohaem synthase dimerisation region LJY22_07800 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJY22_07810 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_07815 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_07820 PF00005 ABC transporter LJY22_07825 PF01027 Inhibitor of apoptosis-promoting Bax1 LJY22_07835 PF04358 DsrC like protein LJY22_07840 PF00708 Acylphosphatase LJY22_07845 PF02743 Cache domain LJY22_07845 PF00672 HAMP domain LJY22_07845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_07850 PF10672 S-adenosylmethionine-dependent methyltransferase LJY22_07850 PF17785 PUA-like domain LJY22_07865 PF00691 OmpA family LJY22_07865 PF05736 OprF membrane domain LJY22_07880 PF00691 OmpA family LJY22_07880 PF05736 OprF membrane domain LJY22_07890 PF07694 5TMR of 5TMR-LYT LJY22_07890 PF00990 Diguanylate cyclase, GGDEF domain LJY22_07895 PF06508 Queuosine biosynthesis protein QueC LJY22_07900 PF04055 Radical SAM superfamily LJY22_07915 PF00089 Trypsin LJY22_07925 PF13193 AMP-binding enzyme C-terminal domain LJY22_07925 PF00501 AMP-binding enzyme LJY22_07925 PF16177 Acetyl-coenzyme A synthetase N-terminus LJY22_07930 PF04303 PrpF protein LJY22_07935 PF00330 Aconitase family (aconitate hydratase) LJY22_07935 PF00694 Aconitase C-terminal domain LJY22_07940 PF00285 Citrate synthase, C-terminal domain LJY22_07970 PF01970 Tripartite tricarboxylate transporter TctA family LJY22_07980 PF01925 Sulfite exporter TauE/SafE LJY22_07985 PF16868 NMT1-like family LJY22_07990 PF05844 YopD protein LJY22_08000 PF07720 Tetratricopeptide repeat LJY22_08015 PF09621 Type III secretion system regulator (LcrR) LJY22_08020 PF00771 FHIPEP family LJY22_08040 PF09059 TyeA LJY22_08050 PF02874 ATP synthase alpha/beta family, beta-barrel domain LJY22_08050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LJY22_08050 PF18269 T3SS EscN ATPase C-terminal domain LJY22_08065 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LJY22_08070 PF00813 FliP family LJY22_08075 PF01313 Bacterial export proteins, family 3 LJY22_08080 PF01311 Bacterial export proteins, family 1 LJY22_08085 PF01312 FlhB HrpN YscU SpaS Family LJY22_08090 PF08360 QacR-like protein, C-terminal region LJY22_08090 PF00440 Bacterial regulatory proteins, tetR family LJY22_08100 PF13533 Biotin-lipoyl like LJY22_08140 PF02661 Fic/DOC family LJY22_08150 PF02108 Flagellar assembly protein FliH LJY22_08160 PF01514 Secretory protein of YscJ/FliF family LJY22_08165 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI LJY22_08175 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) LJY22_08180 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF LJY22_08190 PF16697 Inner membrane component of T3SS, cytoplasmic domain LJY22_08190 PF16693 Inner membrane component of T3SS, periplasmic domain LJY22_08195 PF00263 Bacterial type II and III secretion system protein LJY22_08195 PF03958 Bacterial type II/III secretion system short domain LJY22_08210 PF12833 Helix-turn-helix domain LJY22_08230 PF00171 Aldehyde dehydrogenase family LJY22_08235 PF00158 Sigma-54 interaction domain LJY22_08235 PF01590 GAF domain LJY22_08235 PF02954 Bacterial regulatory protein, Fis family LJY22_08260 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LJY22_08260 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LJY22_08265 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LJY22_08270 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LJY22_08270 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LJY22_08275 PF12833 Helix-turn-helix domain LJY22_08280 PF07715 TonB-dependent Receptor Plug Domain LJY22_08280 PF00593 TonB dependent receptor LJY22_08285 PF12431 Transcriptional regulator LJY22_08285 PF00072 Response regulator receiver domain LJY22_08290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_08290 PF00989 PAS fold LJY22_08290 PF17203 Single cache domain 3 LJY22_08290 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LJY22_08305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJY22_08320 PF13533 Biotin-lipoyl like LJY22_08330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_08330 PF03466 LysR substrate binding domain LJY22_08340 PF13533 Biotin-lipoyl like LJY22_08355 PF11008 Protein of unknown function (DUF2846) LJY22_08360 PF01810 LysE type translocator LJY22_08365 PF07237 Protein of unknown function (DUF1428) LJY22_08385 PF02272 DHHA1 domain LJY22_08385 PF01411 tRNA synthetases class II (A) LJY22_08385 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LJY22_08415 PF02798 Glutathione S-transferase, N-terminal domain LJY22_08470 PF01980 tRNA-methyltransferase O LJY22_08475 PF17676 LD-carboxypeptidase C-terminal domain LJY22_08475 PF02016 LD-carboxypeptidase N-terminal domain LJY22_08545 PF00583 Acetyltransferase (GNAT) family LJY22_08585 PF13495 Phage integrase, N-terminal SAM-like domain LJY22_08585 PF00589 Phage integrase family LJY22_08600 PF13302 Acetyltransferase (GNAT) domain LJY22_08605 PF00158 Sigma-54 interaction domain LJY22_08605 PF18024 Helix-turn-helix domain LJY22_08610 PF05128 Domain of unknown function (DUF697) LJY22_08615 PF04317 YcjX-like family, DUF463 LJY22_08630 PF00425 chorismate binding enzyme LJY22_08630 PF04715 Anthranilate synthase component I, N terminal region LJY22_08635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_08635 PF00512 His Kinase A (phospho-acceptor) domain LJY22_08635 PF09308 LuxQ, periplasmic LJY22_08635 PF00072 Response regulator receiver domain LJY22_08645 PF00293 NUDIX domain LJY22_08650 PF03222 Tryptophan/tyrosine permease family LJY22_08655 PF03313 Serine dehydratase alpha chain LJY22_08655 PF03315 Serine dehydratase beta chain LJY22_08660 PF00563 EAL domain LJY22_08660 PF04940 Sensors of blue-light using FAD LJY22_08670 PF01242 6-pyruvoyl tetrahydropterin synthase LJY22_08675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_08675 PF17200 Single Cache domain 2 LJY22_08675 PF00672 HAMP domain LJY22_08680 PF00152 tRNA synthetases class II (D, K and N) LJY22_08680 PF01336 OB-fold nucleic acid binding domain LJY22_08690 PF00155 Aminotransferase class I and II LJY22_08690 PF00392 Bacterial regulatory proteins, gntR family LJY22_08705 PF00155 Aminotransferase class I and II LJY22_08725 PF00672 HAMP domain LJY22_08725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_08730 PF02028 BCCT, betaine/carnitine/choline family transporter LJY22_08740 PF00196 Bacterial regulatory proteins, luxR family LJY22_08740 PF00072 Response regulator receiver domain LJY22_08745 PF17200 Single Cache domain 2 LJY22_08745 PF07730 Histidine kinase LJY22_08750 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LJY22_08760 PF03480 Bacterial extracellular solute-binding protein, family 7 LJY22_08775 PF00753 Metallo-beta-lactamase superfamily LJY22_08780 PF05951 Bacterial protein of unknown function (DUF882) LJY22_08785 PF01471 Putative peptidoglycan binding domain LJY22_08785 PF03734 L,D-transpeptidase catalytic domain LJY22_08810 PF00925 GTP cyclohydrolase II LJY22_08820 PF03918 Cytochrome C biogenesis protein LJY22_08825 PF08534 Redoxin LJY22_08835 PF03916 Polysulphide reductase, NrfD LJY22_08840 PF13247 4Fe-4S dicluster domain LJY22_08850 PF02335 Cytochrome c552 LJY22_08865 PF03989 DNA gyrase C-terminal domain, beta-propeller LJY22_08865 PF00521 DNA gyrase/topoisomerase IV, subunit A LJY22_08875 PF03477 ATP cone domain LJY22_08875 PF02867 Ribonucleotide reductase, barrel domain LJY22_08875 PF00317 Ribonucleotide reductase, all-alpha domain LJY22_08880 PF00268 Ribonucleotide reductase, small chain LJY22_08890 PF00994 Probable molybdopterin binding domain LJY22_08905 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LJY22_08910 PF03435 Saccharopine dehydrogenase NADP binding domain LJY22_08910 PF16653 Saccharopine dehydrogenase C-terminal domain LJY22_08915 PF00202 Aminotransferase class-III LJY22_08940 PF01066 CDP-alcohol phosphatidyltransferase LJY22_08945 PF02151 UvrB/uvrC motif LJY22_08945 PF08459 UvrC Helix-hairpin-helix N-terminal LJY22_08945 PF01541 GIY-YIG catalytic domain LJY22_08950 PF00196 Bacterial regulatory proteins, luxR family LJY22_08950 PF00072 Response regulator receiver domain LJY22_08955 PF03104 DNA polymerase family B, exonuclease domain LJY22_08955 PF00136 DNA polymerase family B LJY22_08965 PF09285 Elongation factor P, C-terminal LJY22_08965 PF08207 Elongation factor P (EF-P) KOW-like domain LJY22_08965 PF01132 Elongation factor P (EF-P) OB domain LJY22_08970 PF04269 Protein of unknown function, DUF440 LJY22_08975 PF00849 RNA pseudouridylate synthase LJY22_08975 PF01479 S4 domain LJY22_08985 PF01300 Telomere recombination LJY22_08990 PF02811 PHP domain LJY22_08995 PF08056 Tryptophan operon leader peptide LJY22_09000 PF00425 chorismate binding enzyme LJY22_09000 PF04715 Anthranilate synthase component I, N terminal region LJY22_09005 PF00117 Glutamine amidotransferase class-I LJY22_09010 PF00591 Glycosyl transferase family, a/b domain LJY22_09010 PF02885 Glycosyl transferase family, helical bundle domain LJY22_09015 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LJY22_09015 PF00218 Indole-3-glycerol phosphate synthase LJY22_09020 PF00291 Pyridoxal-phosphate dependent enzyme LJY22_09025 PF00290 Tryptophan synthase alpha chain LJY22_09030 PF13545 Crp-like helix-turn-helix domain LJY22_09030 PF00027 Cyclic nucleotide-binding domain LJY22_09035 PF00501 AMP-binding enzyme LJY22_09035 PF13193 AMP-binding enzyme C-terminal domain LJY22_09040 PF00375 Sodium:dicarboxylate symporter family LJY22_09045 PF17327 Acyl homoserine lactone synthase LJY22_09050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_09050 PF00072 Response regulator receiver domain LJY22_09060 PF04279 Intracellular septation protein A LJY22_09065 PF03061 Thioesterase superfamily LJY22_09070 PF03795 YCII-related domain LJY22_09080 PF08267 Cobalamin-independent synthase, N-terminal domain LJY22_09080 PF01717 Cobalamin-independent synthase, Catalytic domain LJY22_09085 PF03466 LysR substrate binding domain LJY22_09085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_09100 PF08448 PAS fold LJY22_09100 PF08447 PAS fold LJY22_09100 PF00990 Diguanylate cyclase, GGDEF domain LJY22_09100 PF00563 EAL domain LJY22_09105 PF04055 Radical SAM superfamily LJY22_09105 PF11842 Domain of unknown function (DUF3362) LJY22_09105 PF08497 Radical SAM N-terminal LJY22_09120 PF00672 HAMP domain LJY22_09120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_09125 PF00072 Response regulator receiver domain LJY22_09125 PF00486 Transcriptional regulatory protein, C terminal LJY22_09130 PF00672 HAMP domain LJY22_09130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_09130 PF00512 His Kinase A (phospho-acceptor) domain LJY22_09150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_09150 PF03466 LysR substrate binding domain LJY22_09155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJY22_09155 PF00529 HlyD membrane-fusion protein of T1SS LJY22_09165 PF01717 Cobalamin-independent synthase, Catalytic domain LJY22_09165 PF08267 Cobalamin-independent synthase, N-terminal domain LJY22_09185 PF12704 MacB-like periplasmic core domain LJY22_09185 PF00005 ABC transporter LJY22_09185 PF02687 FtsX-like permease family LJY22_09190 PF02687 FtsX-like permease family LJY22_09190 PF00005 ABC transporter LJY22_09190 PF12704 MacB-like periplasmic core domain LJY22_09195 PF12704 MacB-like periplasmic core domain LJY22_09195 PF02687 FtsX-like permease family LJY22_09195 PF00005 ABC transporter LJY22_09205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJY22_09220 PF05958 tRNA (Uracil-5-)-methyltransferase LJY22_09220 PF01938 TRAM domain LJY22_09235 PF00085 Thioredoxin LJY22_09240 PF02683 Cytochrome C biogenesis protein transmembrane region LJY22_09240 PF11412 Disulphide bond corrector protein DsbC LJY22_09250 PF00072 Response regulator receiver domain LJY22_09250 PF00196 Bacterial regulatory proteins, luxR family LJY22_09255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_09255 PF00512 His Kinase A (phospho-acceptor) domain LJY22_09260 PF13247 4Fe-4S dicluster domain LJY22_09265 PF03916 Polysulphide reductase, NrfD LJY22_09270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LJY22_09270 PF00384 Molybdopterin oxidoreductase LJY22_09270 PF01568 Molydopterin dinucleotide binding domain LJY22_09275 PF00034 Cytochrome c LJY22_09280 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LJY22_09285 PF04403 Paraquat-inducible protein A LJY22_09290 PF02470 MlaD protein LJY22_09305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJY22_09310 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LJY22_09315 PF18073 Rubredoxin metal binding domain LJY22_09320 PF06305 Lipopolysaccharide assembly protein A domain LJY22_09325 PF00216 Bacterial DNA-binding protein LJY22_09330 PF00575 S1 RNA binding domain LJY22_09335 PF02224 Cytidylate kinase LJY22_09340 PF01343 Peptidase family S49 LJY22_09340 PF08496 Peptidase family S49 N-terminal LJY22_09345 PF00106 short chain dehydrogenase LJY22_09360 PF14579 Helix-hairpin-helix motif LJY22_09360 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LJY22_09360 PF02811 PHP domain LJY22_09360 PF01336 OB-fold nucleic acid binding domain LJY22_09360 PF07733 Bacterial DNA polymerase III alpha NTPase domain LJY22_09365 PF01584 CheW-like domain LJY22_09365 PF00072 Response regulator receiver domain LJY22_09370 PF00480 ROK family LJY22_09375 PF00224 Pyruvate kinase, barrel domain LJY22_09375 PF02887 Pyruvate kinase, alpha/beta domain LJY22_09380 PF01734 Patatin-like phospholipase LJY22_09395 PF00209 Sodium:neurotransmitter symporter family LJY22_09410 PF02378 Phosphotransferase system, EIIC LJY22_09410 PF00367 phosphotransferase system, EIIB LJY22_09415 PF01026 TatD related DNase LJY22_09420 PF09115 DNA polymerase III, delta subunit, C terminal LJY22_09425 PF02223 Thymidylate kinase LJY22_09430 PF02618 YceG-like family LJY22_09435 PF01063 Amino-transferase class IV LJY22_09440 PF02801 Beta-ketoacyl synthase, C-terminal domain LJY22_09440 PF00109 Beta-ketoacyl synthase, N-terminal domain LJY22_09445 PF00550 Phosphopantetheine attachment site LJY22_09455 PF00698 Acyl transferase domain LJY22_09460 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LJY22_09460 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LJY22_09465 PF02504 Fatty acid synthesis protein LJY22_09470 PF01783 Ribosomal L32p protein family LJY22_09475 PF02620 Large ribosomal RNA subunit accumulation protein YceD LJY22_09480 PF02545 Maf-like protein LJY22_09485 PF00849 RNA pseudouridylate synthase LJY22_09485 PF01479 S4 domain LJY22_09490 PF12111 Polyribonucleotide phosphorylase C terminal LJY22_09490 PF10150 Ribonuclease E/G family LJY22_09490 PF00575 S1 RNA binding domain LJY22_09495 PF00916 Sulfate permease family LJY22_09495 PF01740 STAS domain LJY22_09500 PF01451 Low molecular weight phosphotyrosine protein phosphatase LJY22_09505 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LJY22_09505 PF12557 Cob(I)alamin adenosyltransferase N terminal LJY22_09515 PF00485 Phosphoribulokinase / Uridine kinase family LJY22_09520 PF10609 NUBPL iron-transfer P-loop NTPase LJY22_09525 PF01588 Putative tRNA binding domain LJY22_09525 PF09334 tRNA synthetases class I (M) LJY22_09535 PF00392 Bacterial regulatory proteins, gntR family LJY22_09535 PF07840 FadR C-terminal domain LJY22_09540 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LJY22_09545 PF02600 Disulfide bond formation protein DsbB LJY22_09550 PF07516 SecA Wing and Scaffold domain LJY22_09550 PF02810 SEC-C motif LJY22_09550 PF01043 SecA preprotein cross-linking domain LJY22_09550 PF07517 SecA DEAD-like domain LJY22_09555 PF01207 Dihydrouridine synthase (Dus) LJY22_09560 PF00990 Diguanylate cyclase, GGDEF domain LJY22_09560 PF17158 Membrane-associated sensor, integral membrane domain LJY22_09565 PF02903 Alpha amylase, N-terminal ig-like domain LJY22_09565 PF00128 Alpha amylase, catalytic domain LJY22_09570 PF00005 ABC transporter LJY22_09575 PF02653 Branched-chain amino acid transport system / permease component LJY22_09585 PF04217 Protein of unknown function, DUF412 LJY22_09590 PF00871 Acetokinase family LJY22_09595 PF07085 DRTGG domain LJY22_09595 PF01515 Phosphate acetyl/butaryl transferase LJY22_09600 PF13194 Domain of unknown function (DUF4010) LJY22_09610 PF13409 Glutathione S-transferase, N-terminal domain LJY22_09615 PF00005 ABC transporter LJY22_09615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJY22_09620 PF00005 ABC transporter LJY22_09620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJY22_09625 PF12911 N-terminal TM domain of oligopeptide transport permease C LJY22_09625 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_09630 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_09635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJY22_09640 PF02391 MoaE protein LJY22_09645 PF02597 ThiS family LJY22_09650 PF01967 MoaC family LJY22_09655 PF00994 Probable molybdopterin binding domain LJY22_09660 PF04055 Radical SAM superfamily LJY22_09660 PF06463 Molybdenum Cofactor Synthesis C LJY22_09665 PF01933 Uncharacterised protein family UPF0052 LJY22_09670 PF01627 Hpt domain LJY22_09675 PF02954 Bacterial regulatory protein, Fis family LJY22_09675 PF00072 Response regulator receiver domain LJY22_09675 PF00158 Sigma-54 interaction domain LJY22_09680 PF00271 Helicase conserved C-terminal domain LJY22_09680 PF04851 Type III restriction enzyme, res subunit LJY22_09680 PF02151 UvrB/uvrC motif LJY22_09680 PF12344 Ultra-violet resistance protein B LJY22_09680 PF17757 UvrB interaction domain LJY22_09690 PF02508 Rnf-Nqr subunit, membrane protein LJY22_09695 PF04060 Putative Fe-S cluster LJY22_09700 PF12838 4Fe-4S dicluster domain LJY22_09700 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LJY22_09700 PF10531 SLBB domain LJY22_09700 PF13375 RnfC Barrel sandwich hybrid domain LJY22_09705 PF03116 NQR2, RnfD, RnfE family LJY22_09710 PF04205 FMN-binding domain LJY22_09715 PF02508 Rnf-Nqr subunit, membrane protein LJY22_09720 PF10576 Iron-sulfur binding domain of endonuclease III LJY22_09720 PF00633 Helix-hairpin-helix motif LJY22_09720 PF00730 HhH-GPD superfamily base excision DNA repair protein LJY22_09725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJY22_09730 PF10952 Protein of unknown function (DUF2753) LJY22_09735 PF18393 MotY N-terminal domain LJY22_09735 PF00691 OmpA family LJY22_09740 PF00929 Exonuclease LJY22_09745 PF13726 Na+-H+ antiporter family LJY22_09745 PF03553 Na+/H+ antiporter family LJY22_09755 PF00462 Glutaredoxin LJY22_09760 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LJY22_09760 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LJY22_09775 PF00465 Iron-containing alcohol dehydrogenase LJY22_09775 PF00171 Aldehyde dehydrogenase family LJY22_09780 PF01914 MarC family integral membrane protein LJY22_09785 PF00027 Cyclic nucleotide-binding domain LJY22_09785 PF00520 Ion transport protein LJY22_09790 PF02774 Semialdehyde dehydrogenase, dimerisation domain LJY22_09790 PF01118 Semialdehyde dehydrogenase, NAD binding domain LJY22_09795 PF03553 Na+/H+ antiporter family LJY22_09810 PF04245 37-kD nucleoid-associated bacterial protein LJY22_09815 PF07208 Protein of unknown function (DUF1414) LJY22_09820 PF00884 Sulfatase LJY22_09820 PF11893 Domain of unknown function (DUF3413) LJY22_09830 PF00850 Histone deacetylase domain LJY22_09835 PF00106 short chain dehydrogenase LJY22_09845 PF01131 DNA topoisomerase LJY22_09845 PF01751 Toprim domain LJY22_09850 PF00881 Nitroreductase family LJY22_09860 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LJY22_09860 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_09865 PF01343 Peptidase family S49 LJY22_09870 PF17763 Glutaminase/Asparaginase C-terminal domain LJY22_09870 PF00710 Asparaginase, N-terminal LJY22_09875 PF07023 Protein of unknown function (DUF1315) LJY22_09885 PF01641 SelR domain LJY22_09890 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LJY22_09890 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LJY22_09895 PF01263 Aldose 1-epimerase LJY22_09900 PF08447 PAS fold LJY22_09900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_09900 PF13426 PAS domain LJY22_09905 PF13847 Methyltransferase domain LJY22_09920 PF00245 Alkaline phosphatase LJY22_09930 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJY22_09935 PF03992 Antibiotic biosynthesis monooxygenase LJY22_09940 PF00924 Mechanosensitive ion channel LJY22_09940 PF05552 Conserved TM helix LJY22_09945 PF03692 Putative zinc- or iron-chelating domain LJY22_09950 PF04226 Transglycosylase associated protein LJY22_09955 PF03692 Putative zinc- or iron-chelating domain LJY22_09965 PF03313 Serine dehydratase alpha chain LJY22_09970 PF01042 Endoribonuclease L-PSP LJY22_09980 PF00230 Major intrinsic protein LJY22_09985 PF13662 Toprim domain LJY22_09985 PF02132 RecR protein LJY22_09990 PF02575 YbaB/EbfC DNA-binding family LJY22_09995 PF12170 DNA polymerase III tau subunit V interacting with alpha LJY22_09995 PF12169 DNA polymerase III subunits gamma and tau domain III LJY22_09995 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LJY22_10000 PF00156 Phosphoribosyl transferase domain LJY22_10005 PF04304 Protein of unknown function (DUF454) LJY22_10010 PF00072 Response regulator receiver domain LJY22_10015 PF03466 LysR substrate binding domain LJY22_10015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_10020 PF00156 Phosphoribosyl transferase domain LJY22_10025 PF02674 Colicin V production protein LJY22_10030 PF05036 Sporulation related domain LJY22_10035 PF02875 Mur ligase family, glutamate ligase domain LJY22_10035 PF08245 Mur ligase middle domain LJY22_10040 PF17848 Acetyl-coA carboxylase zinc finger domain LJY22_10040 PF01039 Carboxyl transferase domain LJY22_10045 PF01416 tRNA pseudouridine synthase LJY22_10055 PF02774 Semialdehyde dehydrogenase, dimerisation domain LJY22_10055 PF01118 Semialdehyde dehydrogenase, NAD binding domain LJY22_10060 PF11890 Domain of unknown function (DUF3410) LJY22_10060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LJY22_10060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LJY22_10065 PF02801 Beta-ketoacyl synthase, C-terminal domain LJY22_10065 PF00109 Beta-ketoacyl synthase, N-terminal domain LJY22_10070 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LJY22_10070 PF01266 FAD dependent oxidoreductase LJY22_10075 PF03358 NADPH-dependent FMN reductase LJY22_10080 PF08891 YfcL protein LJY22_10085 PF04315 Elongation factor P hydroxylase LJY22_10090 PF03458 UPF0126 domain LJY22_10095 PF01264 Chorismate synthase LJY22_10100 PF05175 Methyltransferase small domain LJY22_10105 PF01713 Smr domain LJY22_10110 PF00300 Histidine phosphatase superfamily (branch 1) LJY22_10115 PF16187 Middle or third domain of peptidase_M16 LJY22_10115 PF00675 Insulinase (Peptidase family M16) LJY22_10115 PF05193 Peptidase M16 inactive domain LJY22_10125 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LJY22_10125 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LJY22_10125 PF00378 Enoyl-CoA hydratase/isomerase LJY22_10130 PF02803 Thiolase, C-terminal domain LJY22_10130 PF00108 Thiolase, N-terminal domain LJY22_10135 PF04542 Sigma-70 region 2 LJY22_10135 PF08281 Sigma-70, region 4 LJY22_10145 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LJY22_10150 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LJY22_10155 PF04333 MlaA lipoprotein LJY22_10165 PF03918 Cytochrome C biogenesis protein LJY22_10170 PF08534 Redoxin LJY22_10175 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LJY22_10175 PF01578 Cytochrome C assembly protein LJY22_10180 PF03100 CcmE LJY22_10185 PF04995 Heme exporter protein D (CcmD) LJY22_10190 PF01578 Cytochrome C assembly protein LJY22_10195 PF03379 CcmB protein LJY22_10200 PF00005 ABC transporter LJY22_10210 PF01584 CheW-like domain LJY22_10220 PF13614 AAA domain LJY22_10225 PF01339 CheB methylesterase LJY22_10225 PF00072 Response regulator receiver domain LJY22_10230 PF01627 Hpt domain LJY22_10230 PF01584 CheW-like domain LJY22_10230 PF00072 Response regulator receiver domain LJY22_10230 PF02895 Signal transducing histidine kinase, homodimeric domain LJY22_10230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_10235 PF04344 Chemotaxis phosphatase, CheZ LJY22_10240 PF00072 Response regulator receiver domain LJY22_10245 PF04539 Sigma-70 region 3 LJY22_10245 PF04542 Sigma-70 region 2 LJY22_10245 PF04545 Sigma-70, region 4 LJY22_10250 PF10609 NUBPL iron-transfer P-loop NTPase LJY22_10255 PF00448 SRP54-type protein, GTPase domain LJY22_10260 PF00771 FHIPEP family LJY22_10265 PF01312 FlhB HrpN YscU SpaS Family LJY22_10270 PF01311 Bacterial export proteins, family 1 LJY22_10275 PF01313 Bacterial export proteins, family 3 LJY22_10280 PF00813 FliP family LJY22_10285 PF04347 Flagellar biosynthesis protein, FliO LJY22_10290 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LJY22_10295 PF02154 Flagellar motor switch protein FliM LJY22_10295 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LJY22_10315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LJY22_10315 PF18269 T3SS EscN ATPase C-terminal domain LJY22_10325 PF01706 FliG C-terminal domain LJY22_10325 PF14841 FliG middle domain LJY22_10325 PF14842 FliG N-terminal domain LJY22_10330 PF01514 Secretory protein of YscJ/FliF family LJY22_10330 PF08345 Flagellar M-ring protein C-terminal LJY22_10335 PF02049 Flagellar hook-basal body complex protein FliE LJY22_10340 PF02954 Bacterial regulatory protein, Fis family LJY22_10340 PF00072 Response regulator receiver domain LJY22_10340 PF00158 Sigma-54 interaction domain LJY22_10345 PF13188 PAS domain LJY22_10345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_10345 PF00512 His Kinase A (phospho-acceptor) domain LJY22_10350 PF02954 Bacterial regulatory protein, Fis family LJY22_10350 PF06490 Flagellar regulatory protein FleQ LJY22_10350 PF00158 Sigma-54 interaction domain LJY22_10355 PF02561 Flagellar protein FliS LJY22_10365 PF07196 Flagellin hook IN motif LJY22_10365 PF02465 Flagellar hook-associated protein 2 N-terminus LJY22_10365 PF07195 Flagellar hook-associated protein 2 C-terminus LJY22_10370 PF03646 FlaG protein LJY22_10375 PF00700 Bacterial flagellin C-terminal helical region LJY22_10375 PF07196 Flagellin hook IN motif LJY22_10375 PF00669 Bacterial flagellin N-terminal helical region LJY22_10380 PF00700 Bacterial flagellin C-terminal helical region LJY22_10380 PF00669 Bacterial flagellin N-terminal helical region LJY22_10380 PF07196 Flagellin hook IN motif LJY22_10385 PF00669 Bacterial flagellin N-terminal helical region LJY22_10385 PF00700 Bacterial flagellin C-terminal helical region LJY22_10385 PF07196 Flagellin hook IN motif LJY22_10390 PF04261 Dyp-type peroxidase family LJY22_10395 PF11143 Protein of unknown function (DUF2919) LJY22_10415 PF03960 ArsC family LJY22_10420 PF01546 Peptidase family M20/M25/M40 LJY22_10420 PF07687 Peptidase dimerisation domain LJY22_10435 PF06804 NlpB/DapX lipoprotein LJY22_10440 PF00701 Dihydrodipicolinate synthetase family LJY22_10450 PF00578 AhpC/TSA family LJY22_10455 PF01594 AI-2E family transporter LJY22_10465 PF01435 Peptidase family M48 LJY22_10465 PF13181 Tetratricopeptide repeat LJY22_10470 PF03960 ArsC family LJY22_10475 PF03358 NADPH-dependent FMN reductase LJY22_10490 PF00860 Permease family LJY22_10500 PF00586 AIR synthase related protein, N-terminal domain LJY22_10500 PF02769 AIR synthase related protein, C-terminal domain LJY22_10505 PF00551 Formyl transferase LJY22_10510 PF13230 Glutamine amidotransferases class-II LJY22_10515 PF13580 SIS domain LJY22_10520 PF02770 Acyl-CoA dehydrogenase, middle domain LJY22_10520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LJY22_10520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LJY22_10520 PF09317 Domain of unknown function (DUF1974) LJY22_10525 PF00916 Sulfate permease family LJY22_10525 PF01740 STAS domain LJY22_10550 PF00929 Exonuclease LJY22_10555 PF00075 RNase H LJY22_10560 PF08241 Methyltransferase domain LJY22_10565 PF16123 Hydroxyacylglutathione hydrolase C-terminus LJY22_10565 PF00753 Metallo-beta-lactamase superfamily LJY22_10570 PF01476 LysM domain LJY22_10570 PF01464 Transglycosylase SLT domain LJY22_10580 PF03372 Endonuclease/Exonuclease/phosphatase family LJY22_10585 PF00543 Nitrogen regulatory protein P-II LJY22_10590 PF00034 Cytochrome c LJY22_10595 PF09179 TilS substrate binding domain LJY22_10595 PF11734 TilS substrate C-terminal domain LJY22_10595 PF01171 PP-loop family LJY22_10600 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LJY22_10605 PF02811 PHP domain LJY22_10605 PF14579 Helix-hairpin-helix motif LJY22_10605 PF01336 OB-fold nucleic acid binding domain LJY22_10605 PF07733 Bacterial DNA polymerase III alpha NTPase domain LJY22_10605 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LJY22_10610 PF01351 Ribonuclease HII LJY22_10615 PF02684 Lipid-A-disaccharide synthetase LJY22_10620 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LJY22_10620 PF00132 Bacterial transferase hexapeptide (six repeats) LJY22_10625 PF07977 FabA-like domain LJY22_10630 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LJY22_10630 PF00132 Bacterial transferase hexapeptide (six repeats) LJY22_10635 PF03938 Outer membrane protein (OmpH-like) LJY22_10640 PF01103 Surface antigen LJY22_10640 PF07244 Surface antigen variable number repeat LJY22_10645 PF17820 PDZ domain LJY22_10645 PF02163 Peptidase family M50 LJY22_10650 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LJY22_10650 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LJY22_10650 PF13288 DXP reductoisomerase C-terminal domain LJY22_10660 PF01255 Putative undecaprenyl diphosphate synthase LJY22_10665 PF01765 Ribosome recycling factor LJY22_10670 PF00696 Amino acid kinase family LJY22_10675 PF00889 Elongation factor TS LJY22_10680 PF00318 Ribosomal protein S2 LJY22_10685 PF00557 Metallopeptidase family M24 LJY22_10690 PF01842 ACT domain LJY22_10690 PF08335 GlnD PII-uridylyltransferase LJY22_10690 PF01966 HD domain LJY22_10690 PF01909 Nucleotidyltransferase domain LJY22_10695 PF11944 Protein of unknown function (DUF3461) LJY22_10700 PF00849 RNA pseudouridylate synthase LJY22_10705 PF04287 tRNA pseudouridine synthase C LJY22_10705 PF00849 RNA pseudouridylate synthase LJY22_10730 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LJY22_10735 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LJY22_10735 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LJY22_10740 PF01370 NAD dependent epimerase/dehydratase family LJY22_10765 PF03806 AbgT putative transporter family LJY22_10770 PF00444 Ribosomal protein L36 LJY22_10775 PF01197 Ribosomal protein L31 LJY22_10780 PF18389 TrmO C-terminal domain LJY22_10780 PF01980 tRNA-methyltransferase O LJY22_10785 PF03129 Anticodon binding domain LJY22_10785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LJY22_10785 PF04073 Aminoacyl-tRNA editing domain LJY22_10795 PF06786 Uncharacterised protein family (UPF0253) LJY22_10805 PF00209 Sodium:neurotransmitter symporter family LJY22_10810 PF00704 Glycosyl hydrolases family 18 LJY22_10810 PF06483 Chitinase C LJY22_10820 PF01272 Transcription elongation factor, GreA/GreB, C-term LJY22_10820 PF03449 Transcription elongation factor, N-terminal LJY22_10825 PF00270 DEAD/DEAH box helicase LJY22_10825 PF00271 Helicase conserved C-terminal domain LJY22_10825 PF00570 HRDC domain LJY22_10825 PF16124 RecQ zinc-binding LJY22_10825 PF09382 RQC domain LJY22_10830 PF11799 impB/mucB/samB family C-terminal domain LJY22_10830 PF11798 IMS family HHH motif LJY22_10830 PF00817 impB/mucB/samB family LJY22_10845 PF02424 ApbE family LJY22_10850 PF00970 Oxidoreductase FAD-binding domain LJY22_10850 PF00111 2Fe-2S iron-sulfur cluster binding domain LJY22_10850 PF00175 Oxidoreductase NAD-binding domain LJY22_10855 PF02508 Rnf-Nqr subunit, membrane protein LJY22_10860 PF02508 Rnf-Nqr subunit, membrane protein LJY22_10865 PF04205 FMN-binding domain LJY22_10870 PF03116 NQR2, RnfD, RnfE family LJY22_10875 PF11973 NQRA C-terminal domain LJY22_10875 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LJY22_10880 PF01722 BolA-like protein LJY22_10885 PF05175 Methyltransferase small domain LJY22_10890 PF03923 Uncharacterized lipoprotein LJY22_10890 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LJY22_10895 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LJY22_10900 PF07690 Major Facilitator Superfamily LJY22_10910 PF04545 Sigma-70, region 4 LJY22_10910 PF04542 Sigma-70 region 2 LJY22_10925 PF03502 Nucleoside-specific channel-forming protein, Tsx LJY22_10930 PF08546 Ketopantoate reductase PanE/ApbA C terminal LJY22_10930 PF02558 Ketopantoate reductase PanE/ApbA LJY22_10935 PF01965 DJ-1/PfpI family LJY22_10940 PF00266 Aminotransferase class-V LJY22_10945 PF17158 Membrane-associated sensor, integral membrane domain LJY22_10945 PF00990 Diguanylate cyclase, GGDEF domain LJY22_10950 PF02657 Fe-S metabolism associated domain LJY22_10955 PF00899 ThiF family LJY22_10960 PF06725 3D domain LJY22_10960 PF03562 MltA specific insert domain LJY22_10970 PF00696 Amino acid kinase family LJY22_10970 PF00583 Acetyltransferase (GNAT) family LJY22_10990 PF13538 UvrD-like helicase C-terminal domain LJY22_10995 PF13361 UvrD-like helicase C-terminal domain LJY22_10995 PF12705 PD-(D/E)XK nuclease superfamily LJY22_10995 PF00580 UvrD/REP helicase N-terminal domain LJY22_11000 PF17946 RecC C-terminal domain LJY22_11005 PF00884 Sulfatase LJY22_11005 PF11893 Domain of unknown function (DUF3413) LJY22_11015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_11015 PF03466 LysR substrate binding domain LJY22_11020 PF07130 YebG protein LJY22_11025 PF14602 Hexapeptide repeat of succinyl-transferase LJY22_11025 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle LJY22_11030 PF03009 Glycerophosphoryl diester phosphodiesterase family LJY22_11035 PF07690 Major Facilitator Superfamily LJY22_11040 PF00230 Major intrinsic protein LJY22_11045 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LJY22_11045 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LJY22_11050 PF00455 DeoR C terminal sensor domain LJY22_11050 PF08220 DeoR-like helix-turn-helix domain LJY22_11055 PF01266 FAD dependent oxidoreductase LJY22_11055 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LJY22_11060 PF01544 CorA-like Mg2+ transporter protein LJY22_11080 PF01588 Putative tRNA binding domain LJY22_11085 PF00356 Bacterial regulatory proteins, lacI family LJY22_11100 PF00356 Bacterial regulatory proteins, lacI family LJY22_11105 PF01263 Aldose 1-epimerase LJY22_11110 PF10509 Galactokinase galactose-binding signature LJY22_11110 PF00288 GHMP kinases N terminal domain LJY22_11110 PF08544 GHMP kinases C terminal LJY22_11115 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LJY22_11115 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LJY22_11120 PF16363 GDP-mannose 4,6 dehydratase LJY22_11125 PF00356 Bacterial regulatory proteins, lacI family LJY22_11130 PF02929 Beta galactosidase small chain LJY22_11130 PF16353 Domain of unknown function(DUF4981) LJY22_11130 PF00703 Glycosyl hydrolases family 2 LJY22_11130 PF02837 Glycosyl hydrolases family 2, sugar binding domain LJY22_11130 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LJY22_11135 PF04074 YhcH/YjgK/YiaL LJY22_11140 PF13520 Amino acid permease LJY22_11145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_11145 PF03466 LysR substrate binding domain LJY22_11175 PF00437 Type II/IV secretion system protein LJY22_11205 PF04972 BON domain LJY22_11205 PF13629 Pilus formation protein N terminal region LJY22_11205 PF00263 Bacterial type II and III secretion system protein LJY22_11230 PF12833 Helix-turn-helix domain LJY22_11230 PF02805 Metal binding domain of Ada LJY22_11235 PF00501 AMP-binding enzyme LJY22_11245 PF03466 LysR substrate binding domain LJY22_11245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_11250 PF14492 Elongation Factor G, domain II LJY22_11250 PF03764 Elongation factor G, domain IV LJY22_11250 PF00009 Elongation factor Tu GTP binding domain LJY22_11250 PF03144 Elongation factor Tu domain 2 LJY22_11250 PF00679 Elongation factor G C-terminus LJY22_11255 PF18073 Rubredoxin metal binding domain LJY22_11265 PF18429 Domain of unknown function (DUF5609) LJY22_11275 PF01048 Phosphorylase superfamily LJY22_11280 PF01676 Metalloenzyme superfamily LJY22_11285 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LJY22_11285 PF00591 Glycosyl transferase family, a/b domain LJY22_11285 PF02885 Glycosyl transferase family, helical bundle domain LJY22_11290 PF01791 DeoC/LacD family aldolase LJY22_11295 PF01773 Na+ dependent nucleoside transporter N-terminus LJY22_11295 PF07670 Nucleoside recognition LJY22_11295 PF07662 Na+ dependent nucleoside transporter C-terminus LJY22_11300 PF01026 TatD related DNase LJY22_11310 PF16658 Class II release factor RF3, C-terminal domain LJY22_11310 PF03144 Elongation factor Tu domain 2 LJY22_11310 PF00009 Elongation factor Tu GTP binding domain LJY22_11330 PF13508 Acetyltransferase (GNAT) domain LJY22_11335 PF02036 SCP-2 sterol transfer family LJY22_11340 PF03707 Bacterial signalling protein N terminal repeat LJY22_11340 PF00563 EAL domain LJY22_11340 PF00990 Diguanylate cyclase, GGDEF domain LJY22_11345 PF01136 Peptidase family U32 LJY22_11350 PF01136 Peptidase family U32 LJY22_11355 PF01554 MatE LJY22_11365 PF13181 Tetratricopeptide repeat LJY22_11365 PF07719 Tetratricopeptide repeat LJY22_11370 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LJY22_11370 PF00575 S1 RNA binding domain LJY22_11370 PF00013 KH domain LJY22_11370 PF03725 3' exoribonuclease family, domain 2 LJY22_11370 PF01138 3' exoribonuclease family, domain 1 LJY22_11375 PF00312 Ribosomal protein S15 LJY22_11380 PF09157 Pseudouridine synthase II TruB, C-terminal LJY22_11380 PF16198 tRNA pseudouridylate synthase B C-terminal domain LJY22_11380 PF01509 TruB family pseudouridylate synthase (N terminal domain) LJY22_11385 PF02033 Ribosome-binding factor A LJY22_11390 PF11987 Translation-initiation factor 2 LJY22_11390 PF00009 Elongation factor Tu GTP binding domain LJY22_11390 PF04760 Translation initiation factor IF-2, N-terminal region LJY22_11390 PF08364 Bacterial translation initiation factor IF-2 associated region LJY22_11395 PF13184 NusA-like KH domain LJY22_11395 PF08529 NusA N-terminal domain LJY22_11395 PF00575 S1 RNA binding domain LJY22_11400 PF02576 RimP N-terminal domain LJY22_11400 PF17384 RimP C-terminal SH3 domain LJY22_11415 PF03840 Preprotein translocase SecG subunit LJY22_11420 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LJY22_11420 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LJY22_11420 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LJY22_11420 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LJY22_11425 PF00809 Pterin binding enzyme LJY22_11430 PF17862 AAA+ lid domain LJY22_11430 PF00004 ATPase family associated with various cellular activities (AAA) LJY22_11430 PF01434 Peptidase family M41 LJY22_11430 PF06480 FtsH Extracellular LJY22_11435 PF01728 FtsJ-like methyltransferase LJY22_11440 PF01985 CRS1 / YhbY (CRM) domain LJY22_11445 PF01272 Transcription elongation factor, GreA/GreB, C-term LJY22_11445 PF03449 Transcription elongation factor, N-terminal LJY22_11450 PF13609 Gram-negative porin LJY22_11455 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LJY22_11465 PF00579 tRNA synthetases class I (W and Y) LJY22_11470 PF08525 Opacity-associated protein A N-terminal motif LJY22_11470 PF01476 LysM domain LJY22_11470 PF01551 Peptidase family M23 LJY22_11475 PF00873 AcrB/AcrD/AcrF family LJY22_11485 PF01521 Iron-sulphur cluster biosynthesis LJY22_11490 PF00202 Aminotransferase class-III LJY22_11495 PF01594 AI-2E family transporter LJY22_11500 PF08468 Methyltransferase small domain N-terminal LJY22_11500 PF05175 Methyltransferase small domain LJY22_11505 PF00512 His Kinase A (phospho-acceptor) domain LJY22_11505 PF09308 LuxQ, periplasmic LJY22_11505 PF00072 Response regulator receiver domain LJY22_11505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_11510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJY22_11515 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_11520 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_11520 PF12911 N-terminal TM domain of oligopeptide transport permease C LJY22_11525 PF00005 ABC transporter LJY22_11525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJY22_11530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJY22_11530 PF00005 ABC transporter LJY22_11540 PF01869 BadF/BadG/BcrA/BcrD ATPase family LJY22_11545 PF02838 Glycosyl hydrolase family 20, domain 2 LJY22_11545 PF00728 Glycosyl hydrolase family 20, catalytic domain LJY22_11550 PF06165 Glycosyltransferase family 36 LJY22_11550 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LJY22_11555 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LJY22_11555 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LJY22_11555 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LJY22_11555 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LJY22_11560 PF00005 ABC transporter LJY22_11560 PF08402 TOBE domain LJY22_11570 PF13416 Bacterial extracellular solute-binding protein LJY22_11575 PF00909 Ammonium Transporter Family LJY22_11580 PF00543 Nitrogen regulatory protein P-II LJY22_11585 PF06062 Uncharacterised protein family (UPF0231) LJY22_11590 PF11791 Aconitate B N-terminal domain LJY22_11590 PF06434 Aconitate hydratase 2 N-terminus LJY22_11590 PF00330 Aconitase family (aconitate hydratase) LJY22_11595 PF01734 Patatin-like phospholipase LJY22_11600 PF14814 Bifunctional transglycosylase second domain LJY22_11600 PF00912 Transglycosylase LJY22_11600 PF00905 Penicillin binding protein transpeptidase domain LJY22_11605 PF08482 ATP-dependent helicase C-terminal LJY22_11605 PF04408 Helicase associated domain (HA2) LJY22_11605 PF00271 Helicase conserved C-terminal domain LJY22_11605 PF00270 DEAD/DEAH box helicase LJY22_11610 PF03749 Sugar fermentation stimulation protein RE domain LJY22_11610 PF17746 SfsA N-terminal OB domain LJY22_11615 PF01258 Prokaryotic dksA/traR C4-type zinc finger LJY22_11620 PF00749 tRNA synthetases class I (E and Q), catalytic domain LJY22_11625 PF01743 Poly A polymerase head domain LJY22_11625 PF12626 Polymerase A arginine-rich C-terminus LJY22_11625 PF12627 Probable RNA and SrmB- binding site of polymerase A LJY22_11630 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LJY22_11635 PF02548 Ketopantoate hydroxymethyltransferase LJY22_11640 PF02569 Pantoate-beta-alanine ligase LJY22_11645 PF03279 Bacterial lipid A biosynthesis acyltransferase LJY22_11650 PF01061 ABC-2 type transporter LJY22_11655 PF00005 ABC transporter LJY22_11660 PF00916 Sulfate permease family LJY22_11660 PF01740 STAS domain LJY22_11665 PF00484 Carbonic anhydrase LJY22_11670 PF00156 Phosphoribosyl transferase domain LJY22_11675 PF00440 Bacterial regulatory proteins, tetR family LJY22_11680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LJY22_11680 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_11685 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LJY22_11685 PF00364 Biotin-requiring enzyme LJY22_11685 PF02817 e3 binding domain LJY22_11690 PF17831 Pyruvate dehydrogenase E1 component middle domain LJY22_11690 PF00456 Transketolase, thiamine diphosphate binding domain LJY22_11695 PF07729 FCD domain LJY22_11695 PF00392 Bacterial regulatory proteins, gntR family LJY22_11700 PF01510 N-acetylmuramoyl-L-alanine amidase LJY22_11705 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LJY22_11705 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LJY22_11710 PF00114 Pilin (bacterial filament) LJY22_11710 PF07963 Prokaryotic N-terminal methylation motif LJY22_11715 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LJY22_11715 PF00437 Type II/IV secretion system protein LJY22_11720 PF00482 Type II secretion system (T2SS), protein F LJY22_11725 PF01478 Type IV leader peptidase family LJY22_11725 PF06750 Bacterial Peptidase A24 N-terminal domain LJY22_11730 PF01121 Dephospho-CoA kinase LJY22_11735 PF07072 Cell division protein LJY22_11740 PF03884 DNA gyrase inhibitor YacG LJY22_11745 PF01245 Ribosomal protein L19 LJY22_11750 PF01746 tRNA (Guanine-1)-methyltransferase LJY22_11755 PF01782 RimM N-terminal domain LJY22_11755 PF05239 PRC-barrel domain LJY22_11760 PF00886 Ribosomal protein S16 LJY22_11765 PF02978 Signal peptide binding domain LJY22_11765 PF02881 SRP54-type protein, helical bundle domain LJY22_11765 PF00448 SRP54-type protein, GTPase domain LJY22_11770 PF01578 Cytochrome C assembly protein LJY22_11775 PF01595 Cyclin M transmembrane N-terminal domain LJY22_11775 PF03471 Transporter associated domain LJY22_11775 PF00571 CBS domain LJY22_11780 PF02664 S-Ribosylhomocysteinase (LuxS) LJY22_11790 PF04262 Glutamate-cysteine ligase LJY22_11795 PF05193 Peptidase M16 inactive domain LJY22_11795 PF00675 Insulinase (Peptidase family M16) LJY22_11800 PF09335 SNARE associated Golgi protein LJY22_11805 PF00107 Zinc-binding dehydrogenase LJY22_11805 PF08240 Alcohol dehydrogenase GroES-like domain LJY22_11810 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit LJY22_11815 PF00682 HMGL-like LJY22_11815 PF00364 Biotin-requiring enzyme LJY22_11815 PF02436 Conserved carboxylase domain LJY22_11820 PF04277 Oxaloacetate decarboxylase, gamma chain LJY22_11875 PF02599 Global regulator protein family LJY22_11880 PF00696 Amino acid kinase family LJY22_11880 PF01842 ACT domain LJY22_11880 PF13840 ACT domain LJY22_11885 PF02272 DHHA1 domain LJY22_11885 PF01411 tRNA synthetases class II (A) LJY22_11885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LJY22_11890 PF02631 RecX family LJY22_11895 PF00154 recA bacterial DNA recombination protein LJY22_11900 PF02464 Competence-damaged protein LJY22_11905 PF01624 MutS domain I LJY22_11905 PF05188 MutS domain II LJY22_11905 PF05192 MutS domain III LJY22_11905 PF05190 MutS family domain IV LJY22_11905 PF00488 MutS domain V LJY22_11910 PF00140 Sigma-70 factor, region 1.2 LJY22_11910 PF04542 Sigma-70 region 2 LJY22_11910 PF04539 Sigma-70 region 3 LJY22_11910 PF04545 Sigma-70, region 4 LJY22_11915 PF01476 LysM domain LJY22_11915 PF01551 Peptidase family M23 LJY22_11925 PF01975 Survival protein SurE LJY22_11930 PF01142 tRNA pseudouridine synthase D (TruD) LJY22_11935 PF02542 YgbB family LJY22_11940 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LJY22_11945 PF04977 Septum formation initiator LJY22_11950 PF00113 Enolase, C-terminal TIM barrel domain LJY22_11950 PF03952 Enolase, N-terminal domain LJY22_11955 PF06418 CTP synthase N-terminus LJY22_11955 PF00117 Glutamine amidotransferase class-I LJY22_11960 PF03819 MazG nucleotide pyrophosphohydrolase domain LJY22_11965 PF04607 Region found in RelA / SpoT proteins LJY22_11965 PF02824 TGS domain LJY22_11965 PF13291 ACT domain LJY22_11970 PF05958 tRNA (Uracil-5-)-methyltransferase LJY22_11970 PF01938 TRAM domain LJY22_11975 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LJY22_11975 PF00072 Response regulator receiver domain LJY22_11975 PF00512 His Kinase A (phospho-acceptor) domain LJY22_11975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_11975 PF00672 HAMP domain LJY22_11975 PF01627 Hpt domain LJY22_11980 PF01648 4'-phosphopantetheinyl transferase superfamily LJY22_11985 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LJY22_11990 PF11967 Recombination protein O N terminal LJY22_11990 PF02565 Recombination protein O C terminal LJY22_11995 PF07650 KH domain LJY22_11995 PF01926 50S ribosome-binding GTPase LJY22_12000 PF14622 Ribonuclease-III-like LJY22_12000 PF00035 Double-stranded RNA binding motif LJY22_12005 PF10502 Signal peptidase, peptidase S26 LJY22_12010 PF00009 Elongation factor Tu GTP binding domain LJY22_12010 PF00679 Elongation factor G C-terminus LJY22_12010 PF03144 Elongation factor Tu domain 2 LJY22_12010 PF06421 GTP-binding protein LepA C-terminus LJY22_12020 PF03888 MucB/RseB N-terminal domain LJY22_12020 PF17188 MucB/RseB C-terminal domain LJY22_12025 PF03873 Anti sigma-E protein RseA, C-terminal domain LJY22_12025 PF03872 Anti sigma-E protein RseA, N-terminal domain LJY22_12030 PF08281 Sigma-70, region 4 LJY22_12030 PF04542 Sigma-70 region 2 LJY22_12035 PF00890 FAD binding domain LJY22_12035 PF02910 Fumarate reductase flavoprotein C-term LJY22_12040 PF03937 Flavinator of succinate dehydrogenase LJY22_12045 PF01571 Aminomethyltransferase folate-binding domain LJY22_12060 PF01494 FAD binding domain LJY22_12065 PF01494 FAD binding domain LJY22_12070 PF03695 Uncharacterised protein family (UPF0149) LJY22_12075 PF05164 Cell division protein ZapA LJY22_12085 PF01812 5-formyltetrahydrofolate cyclo-ligase family LJY22_12090 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LJY22_12095 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LJY22_12095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LJY22_12095 PF01842 ACT domain LJY22_12100 PF04402 Protein of unknown function (DUF541) LJY22_12105 PF03466 LysR substrate binding domain LJY22_12105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_12110 PF01810 LysE type translocator LJY22_12120 PF05552 Conserved TM helix LJY22_12120 PF00924 Mechanosensitive ion channel LJY22_12125 PF01116 Fructose-bisphosphate aldolase class-II LJY22_12130 PF00162 Phosphoglycerate kinase LJY22_12135 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LJY22_12135 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LJY22_12140 PF07715 TonB-dependent Receptor Plug Domain LJY22_12140 PF00593 TonB dependent receptor LJY22_12145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_12145 PF03466 LysR substrate binding domain LJY22_12150 PF00456 Transketolase, thiamine diphosphate binding domain LJY22_12150 PF02780 Transketolase, C-terminal domain LJY22_12150 PF02779 Transketolase, pyrimidine binding domain LJY22_12155 PF00438 S-adenosylmethionine synthetase, N-terminal domain LJY22_12155 PF02772 S-adenosylmethionine synthetase, central domain LJY22_12155 PF02773 S-adenosylmethionine synthetase, C-terminal domain LJY22_12165 PF10263 SprT-like family LJY22_12165 PF17283 SprT-like zinc ribbon domain LJY22_12170 PF04231 Endonuclease I LJY22_12175 PF04452 RNA methyltransferase LJY22_12180 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LJY22_12180 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LJY22_12185 PF02622 Uncharacterized ACR, COG1678 LJY22_12190 PF03652 Holliday junction resolvase LJY22_12195 PF00437 Type II/IV secretion system protein LJY22_12200 PF00437 Type II/IV secretion system protein LJY22_12205 PF01168 Alanine racemase, N-terminal domain LJY22_12210 PF03807 NADP oxidoreductase coenzyme F420-dependent LJY22_12210 PF14748 Pyrroline-5-carboxylate reductase dimerisation LJY22_12215 PF02325 YGGT family LJY22_12220 PF02594 Uncharacterised ACR, YggU family COG1872 LJY22_12230 PF01725 Ham1 family LJY22_12235 PF04055 Radical SAM superfamily LJY22_12235 PF06969 HemN C-terminal domain LJY22_12240 PF04960 Glutaminase LJY22_12245 PF02086 D12 class N6 adenine-specific DNA methyltransferase LJY22_12250 PF02390 Putative methyltransferase LJY22_12255 PF00633 Helix-hairpin-helix motif LJY22_12255 PF00730 HhH-GPD superfamily base excision DNA repair protein LJY22_12255 PF14815 NUDIX domain LJY22_12260 PF04362 Bacterial Fe(2+) trafficking LJY22_12265 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LJY22_12265 PF01464 Transglycosylase SLT domain LJY22_12305 PF00672 HAMP domain LJY22_12305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_12305 PF17200 Single Cache domain 2 LJY22_12335 PF00171 Aldehyde dehydrogenase family LJY22_12385 PF00356 Bacterial regulatory proteins, lacI family LJY22_12385 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LJY22_12390 PF04794 YdjC-like protein LJY22_12395 PF11975 Family 4 glycosyl hydrolase C-terminal domain LJY22_12395 PF02056 Family 4 glycosyl hydrolase LJY22_12400 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LJY22_12405 PF02378 Phosphotransferase system, EIIC LJY22_12410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LJY22_12415 PF01522 Polysaccharide deacetylase LJY22_12430 PF10011 Predicted membrane protein (DUF2254) LJY22_12440 PF03739 Lipopolysaccharide export system permease LptF/LptG LJY22_12445 PF03739 Lipopolysaccharide export system permease LptF/LptG LJY22_12450 PF00883 Cytosol aminopeptidase family, catalytic domain LJY22_12450 PF02789 Cytosol aminopeptidase family, N-terminal domain LJY22_12455 PF04364 DNA polymerase III chi subunit, HolC LJY22_12460 PF08264 Anticodon-binding domain of tRNA LJY22_12460 PF10458 Valyl tRNA synthetase tRNA binding arm LJY22_12460 PF00133 tRNA synthetases class I (I, L, M and V) LJY22_12470 PF00583 Acetyltransferase (GNAT) family LJY22_12480 PF06877 Regulator of ribonuclease activity B LJY22_12490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LJY22_12490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LJY22_12500 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LJY22_12500 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LJY22_12505 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LJY22_12505 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LJY22_12510 PF01042 Endoribonuclease L-PSP LJY22_12515 PF01553 Acyltransferase LJY22_12520 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LJY22_12525 PF01722 BolA-like protein LJY22_12535 PF05494 MlaC protein LJY22_12540 PF02470 MlaD protein LJY22_12545 PF02405 Permease MlaE LJY22_12550 PF00005 ABC transporter LJY22_12555 PF01699 Sodium/calcium exchanger protein LJY22_12560 PF00571 CBS domain LJY22_12560 PF01380 SIS domain LJY22_12570 PF03968 OstA-like protein LJY22_12575 PF00005 ABC transporter LJY22_12575 PF12399 Branched-chain amino acid ATP-binding cassette transporter LJY22_12580 PF04963 Sigma-54 factor, core binding domain LJY22_12580 PF00309 Sigma-54 factor, Activator interacting domain (AID) LJY22_12580 PF04552 Sigma-54, DNA binding domain LJY22_12585 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LJY22_12590 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LJY22_12595 PF03668 P-loop ATPase protein family LJY22_12600 PF00381 PTS HPr component phosphorylation site LJY22_12605 PF00571 CBS domain LJY22_12605 PF01769 Divalent cation transporter LJY22_12605 PF03448 MgtE intracellular N domain LJY22_12610 PF01523 Putative modulator of DNA gyrase LJY22_12615 PF04751 Protein of unknown function (DUF615) LJY22_12620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LJY22_12620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LJY22_12625 PF00849 RNA pseudouridylate synthase LJY22_12635 PF12137 RNA polymerase recycling family C-terminal LJY22_12635 PF00176 SNF2 family N-terminal domain LJY22_12635 PF18339 RapA N-terminal Tudor like domain 1 LJY22_12635 PF00271 Helicase conserved C-terminal domain LJY22_12635 PF18337 RapA N-terminal Tudor like domain LJY22_12640 PF13638 PIN domain LJY22_12640 PF02562 PhoH-like protein LJY22_12645 PF01523 Putative modulator of DNA gyrase LJY22_12650 PF00795 Carbon-nitrogen hydrolase LJY22_12655 PF13502 AsmA-like C-terminal region LJY22_12655 PF13116 Protein of unknown function LJY22_12660 PF10150 Ribonuclease E/G family LJY22_12660 PF00575 S1 RNA binding domain LJY22_12665 PF02545 Maf-like protein LJY22_12670 PF04093 rod shape-determining protein MreD LJY22_12675 PF04085 rod shape-determining protein MreC LJY22_12715 PF07963 Prokaryotic N-terminal methylation motif LJY22_12725 PF00482 Type II secretion system (T2SS), protein F LJY22_12730 PF00437 Type II/IV secretion system protein LJY22_12730 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LJY22_12740 PF13401 AAA domain LJY22_12740 PF01471 Putative peptidoglycan binding domain LJY22_12745 PF03958 Bacterial type II/III secretion system short domain LJY22_12745 PF00263 Bacterial type II and III secretion system protein LJY22_12765 PF00563 EAL domain LJY22_12765 PF17157 Gammaproteobacterial periplasmic sensor domain LJY22_12765 PF00990 Diguanylate cyclase, GGDEF domain LJY22_12770 PF00436 Single-strand binding protein family LJY22_12775 PF00196 Bacterial regulatory proteins, luxR family LJY22_12780 PF00483 Nucleotidyl transferase LJY22_12785 PF00005 ABC transporter LJY22_12785 PF17755 UvrA DNA-binding domain LJY22_12785 PF17760 UvrA interaction domain LJY22_12795 PF00266 Aminotransferase class-V LJY22_12800 PF01842 ACT domain LJY22_12800 PF00696 Amino acid kinase family LJY22_12805 PF02574 Homocysteine S-methyltransferase LJY22_12805 PF00809 Pterin binding enzyme LJY22_12805 PF02310 B12 binding domain LJY22_12805 PF02607 B12 binding domain LJY22_12805 PF02965 Vitamin B12 dependent methionine synthase, activation domain LJY22_12810 PF00999 Sodium/hydrogen exchanger family LJY22_12865 PF01507 Phosphoadenosine phosphosulfate reductase family LJY22_12870 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LJY22_12870 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LJY22_12875 PF00667 FAD binding domain LJY22_12875 PF00258 Flavodoxin LJY22_12875 PF00175 Oxidoreductase NAD-binding domain LJY22_12895 PF01207 Dihydrouridine synthase (Dus) LJY22_12900 PF01475 Ferric uptake regulator family LJY22_12910 PF00342 Phosphoglucose isomerase LJY22_12915 PF01894 Uncharacterised protein family UPF0047 LJY22_12920 PF00842 Alanine racemase, C-terminal domain LJY22_12920 PF01168 Alanine racemase, N-terminal domain LJY22_12925 PF00772 DnaB-like helicase N terminal domain LJY22_12925 PF03796 DnaB-like helicase C terminal domain LJY22_12935 PF03948 Ribosomal protein L9, C-terminal domain LJY22_12935 PF01281 Ribosomal protein L9, N-terminal domain LJY22_12940 PF01084 Ribosomal protein S18 LJY22_12945 PF00436 Single-strand binding protein family LJY22_12950 PF01250 Ribosomal protein S6 LJY22_12955 PF00834 Ribulose-phosphate 3 epimerase family LJY22_12960 PF02086 D12 class N6 adenine-specific DNA methyltransferase LJY22_12970 PF01761 3-dehydroquinate synthase LJY22_12975 PF01202 Shikimate kinase LJY22_12980 PF11741 AMIN domain LJY22_12980 PF00263 Bacterial type II and III secretion system protein LJY22_12980 PF03958 Bacterial type II/III secretion system short domain LJY22_12980 PF07660 Secretin and TonB N terminus short domain LJY22_12985 PF04351 Pilus assembly protein, PilP LJY22_12995 PF05137 Fimbrial assembly protein (PilN) LJY22_13005 PF00912 Transglycosylase LJY22_13005 PF17092 Penicillin-binding protein OB-like domain LJY22_13005 PF00905 Penicillin binding protein transpeptidase domain LJY22_13010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_13010 PF03466 LysR substrate binding domain LJY22_13015 PF00462 Glutaredoxin LJY22_13015 PF08534 Redoxin LJY22_13020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LJY22_13020 PF00403 Heavy-metal-associated domain LJY22_13020 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_13030 PF00206 Lyase LJY22_13030 PF14698 Argininosuccinate lyase C-terminal LJY22_13030 PF00583 Acetyltransferase (GNAT) family LJY22_13035 PF00764 Arginosuccinate synthase LJY22_13040 PF00696 Amino acid kinase family LJY22_13045 PF01118 Semialdehyde dehydrogenase, NAD binding domain LJY22_13045 PF02774 Semialdehyde dehydrogenase, dimerisation domain LJY22_13050 PF07687 Peptidase dimerisation domain LJY22_13050 PF01546 Peptidase family M20/M25/M40 LJY22_13055 PF00311 Phosphoenolpyruvate carboxylase LJY22_13065 PF02219 Methylenetetrahydrofolate reductase LJY22_13070 PF00696 Amino acid kinase family LJY22_13070 PF00742 Homoserine dehydrogenase LJY22_13070 PF03447 Homoserine dehydrogenase, NAD binding domain LJY22_13075 PF01053 Cys/Met metabolism PLP-dependent enzyme LJY22_13080 PF01340 Met Apo-repressor, MetJ LJY22_13085 PF00390 Malic enzyme, N-terminal domain LJY22_13085 PF03949 Malic enzyme, NAD binding domain LJY22_13090 PF00210 Ferritin-like domain LJY22_13095 PF04324 BFD-like [2Fe-2S] binding domain LJY22_13100 PF00009 Elongation factor Tu GTP binding domain LJY22_13100 PF03144 Elongation factor Tu domain 2 LJY22_13100 PF03143 Elongation factor Tu C-terminal domain LJY22_13105 PF03144 Elongation factor Tu domain 2 LJY22_13105 PF03764 Elongation factor G, domain IV LJY22_13105 PF00009 Elongation factor Tu GTP binding domain LJY22_13105 PF00679 Elongation factor G C-terminus LJY22_13105 PF14492 Elongation Factor G, domain II LJY22_13110 PF00177 Ribosomal protein S7p/S5e LJY22_13115 PF00164 Ribosomal protein S12/S23 LJY22_13120 PF04077 DsrH like protein LJY22_13125 PF02635 DsrE/DsrF-like family LJY22_13130 PF02635 DsrE/DsrF-like family LJY22_13135 PF08348 YheO-like PAS domain LJY22_13135 PF13309 HTH domain LJY22_13140 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LJY22_13140 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LJY22_13150 PF04102 SlyX LJY22_13155 PF01112 Asparaginase LJY22_13160 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LJY22_13170 PF02254 TrkA-N domain LJY22_13170 PF00999 Sodium/hydrogen exchanger family LJY22_13175 PF02525 Flavodoxin-like fold LJY22_13180 PF00005 ABC transporter LJY22_13180 PF12848 ABC transporter LJY22_13190 PF00561 alpha/beta hydrolase fold LJY22_13195 PF06794 Uncharacterised protein family (UPF0270) LJY22_13200 PF00485 Phosphoribulokinase / Uridine kinase family LJY22_13205 PF00027 Cyclic nucleotide-binding domain LJY22_13205 PF13545 Crp-like helix-turn-helix domain LJY22_13215 PF00171 Aldehyde dehydrogenase family LJY22_13220 PF04958 Arginine N-succinyltransferase beta subunit LJY22_13225 PF00202 Aminotransferase class-III LJY22_13230 PF00117 Glutamine amidotransferase class-I LJY22_13245 PF00579 tRNA synthetases class I (W and Y) LJY22_13250 PF13419 Haloacid dehalogenase-like hydrolase LJY22_13255 PF00588 SpoU rRNA Methylase family LJY22_13255 PF08032 RNA 2'-O ribose methyltransferase substrate binding LJY22_13260 PF00575 S1 RNA binding domain LJY22_13260 PF00773 RNB domain LJY22_13260 PF08206 Ribonuclease B OB domain LJY22_13260 PF08461 Ribonuclease R winged-helix domain LJY22_13260 PF17876 Cold shock domain LJY22_13265 PF02082 Transcriptional regulator LJY22_13270 PF00970 Oxidoreductase FAD-binding domain LJY22_13270 PF00042 Globin LJY22_13270 PF00175 Oxidoreductase NAD-binding domain LJY22_13275 PF08238 Sel1 repeat LJY22_13280 PF00709 Adenylosuccinate synthetase LJY22_13285 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LJY22_13290 PF01145 SPFH domain / Band 7 family LJY22_13295 PF01145 SPFH domain / Band 7 family LJY22_13295 PF12221 Bacterial membrane protein N terminal LJY22_13300 PF16360 GTP-binding GTPase Middle Region LJY22_13300 PF13167 GTP-binding GTPase N-terminal LJY22_13300 PF01926 50S ribosome-binding GTPase LJY22_13305 PF17209 Hfq protein LJY22_13315 PF01119 DNA mismatch repair protein, C-terminal domain LJY22_13315 PF08676 MutL C terminal dimerisation domain LJY22_13320 PF01520 N-acetylmuramoyl-L-alanine amidase LJY22_13325 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LJY22_13330 PF08331 Domain of unknown function (DUF1730) LJY22_13395 PF00929 Exonuclease LJY22_13400 PF03193 RsgA GTPase LJY22_13405 PF02666 Phosphatidylserine decarboxylase LJY22_13410 PF02080 TrkA-C domain LJY22_13410 PF03600 Citrate transporter LJY22_13420 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LJY22_13420 PF01676 Metalloenzyme superfamily LJY22_13425 PF00581 Rhodanese-like domain LJY22_13430 PF02556 Preprotein translocase subunit SecB LJY22_13435 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LJY22_13435 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LJY22_13440 PF06426 Serine acetyltransferase, N-terminal LJY22_13440 PF00132 Bacterial transferase hexapeptide (six repeats) LJY22_13445 PF01551 Peptidase family M23 LJY22_13455 PF08360 QacR-like protein, C-terminal region LJY22_13455 PF00440 Bacterial regulatory proteins, tetR family LJY22_13465 PF00152 tRNA synthetases class II (D, K and N) LJY22_13470 PF00890 FAD binding domain LJY22_13470 PF02910 Fumarate reductase flavoprotein C-term LJY22_13475 PF13085 2Fe-2S iron-sulfur cluster binding domain LJY22_13475 PF13183 4Fe-4S dicluster domain LJY22_13480 PF02300 Fumarate reductase subunit C LJY22_13485 PF02313 Fumarate reductase subunit D LJY22_13495 PF01132 Elongation factor P (EF-P) OB domain LJY22_13495 PF08207 Elongation factor P (EF-P) KOW-like domain LJY22_13495 PF09285 Elongation factor P, C-terminal LJY22_13500 PF04055 Radical SAM superfamily LJY22_13505 PF02308 MgtC family LJY22_13515 PF00118 TCP-1/cpn60 chaperonin family LJY22_13520 PF00166 Chaperonin 10 Kd subunit LJY22_13525 PF01554 MatE LJY22_13530 PF00365 Phosphofructokinase LJY22_13535 PF01545 Cation efflux family LJY22_13535 PF16916 Dimerisation domain of Zinc Transporter LJY22_13540 PF07813 LTXXQ motif family protein LJY22_13545 PF00072 Response regulator receiver domain LJY22_13545 PF00486 Transcriptional regulatory protein, C terminal LJY22_13550 PF16527 Two-component sensor protein CpxA, periplasmic domain LJY22_13550 PF00672 HAMP domain LJY22_13550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_13550 PF00512 His Kinase A (phospho-acceptor) domain LJY22_13555 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LJY22_13555 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LJY22_13560 PF00588 SpoU rRNA Methylase family LJY22_13565 PF04186 FxsA cytoplasmic membrane protein LJY22_13570 PF10415 Fumarase C C-terminus LJY22_13570 PF00206 Lyase LJY22_13575 PF03605 Anaerobic c4-dicarboxylate membrane transporter LJY22_13580 PF11412 Disulphide bond corrector protein DsbC LJY22_13580 PF02683 Cytochrome C biogenesis protein transmembrane region LJY22_13585 PF00196 Bacterial regulatory proteins, luxR family LJY22_13585 PF00072 Response regulator receiver domain LJY22_13590 PF03471 Transporter associated domain LJY22_13590 PF00999 Sodium/hydrogen exchanger family LJY22_13590 PF02080 TrkA-C domain LJY22_13600 PF00474 Sodium:solute symporter family LJY22_13615 PF00206 Lyase LJY22_13615 PF10415 Fumarase C C-terminus LJY22_13620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_13620 PF00512 His Kinase A (phospho-acceptor) domain LJY22_13620 PF09308 LuxQ, periplasmic LJY22_13620 PF00072 Response regulator receiver domain LJY22_13625 PF12832 MFS_1 like family LJY22_13640 PF13193 AMP-binding enzyme C-terminal domain LJY22_13640 PF00501 AMP-binding enzyme LJY22_13640 PF16177 Acetyl-coenzyme A synthetase N-terminus LJY22_13645 PF01220 Dehydroquinase class II LJY22_13650 PF00364 Biotin-requiring enzyme LJY22_13655 PF02785 Biotin carboxylase C-terminal domain LJY22_13655 PF00289 Biotin carboxylase, N-terminal domain LJY22_13655 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LJY22_13665 PF01207 Dihydrouridine synthase (Dus) LJY22_13670 PF02954 Bacterial regulatory protein, Fis family LJY22_13680 PF12848 ABC transporter LJY22_13680 PF00005 ABC transporter LJY22_13730 PF01276 Orn/Lys/Arg decarboxylase, major domain LJY22_13730 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LJY22_13730 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LJY22_13735 PF13520 Amino acid permease LJY22_13745 PF18500 CadC C-terminal domain 1 LJY22_13745 PF00486 Transcriptional regulatory protein, C terminal LJY22_13750 PF13411 MerR HTH family regulatory protein LJY22_13755 PF02142 MGS-like domain LJY22_13755 PF01808 AICARFT/IMPCHase bienzyme LJY22_13760 PF02843 Phosphoribosylglycinamide synthetase, C domain LJY22_13760 PF02844 Phosphoribosylglycinamide synthetase, N domain LJY22_13760 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LJY22_13770 PF00216 Bacterial DNA-binding protein LJY22_13775 PF00571 CBS domain LJY22_13775 PF01595 Cyclin M transmembrane N-terminal domain LJY22_13780 PF04222 Protein of unknown function (DUF416) LJY22_13785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LJY22_13790 PF03167 Uracil DNA glycosylase superfamily LJY22_13795 PF01208 Uroporphyrinogen decarboxylase (URO-D) LJY22_13800 PF00293 NUDIX domain LJY22_13800 PF09297 NADH pyrophosphatase zinc ribbon domain LJY22_13805 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LJY22_13810 PF05000 RNA polymerase Rpb1, domain 4 LJY22_13810 PF04983 RNA polymerase Rpb1, domain 3 LJY22_13810 PF04998 RNA polymerase Rpb1, domain 5 LJY22_13810 PF04997 RNA polymerase Rpb1, domain 1 LJY22_13810 PF00623 RNA polymerase Rpb1, domain 2 LJY22_13815 PF04561 RNA polymerase Rpb2, domain 2 LJY22_13815 PF10385 RNA polymerase beta subunit external 1 domain LJY22_13815 PF04560 RNA polymerase Rpb2, domain 7 LJY22_13815 PF00562 RNA polymerase Rpb2, domain 6 LJY22_13815 PF04565 RNA polymerase Rpb2, domain 3 LJY22_13815 PF04563 RNA polymerase beta subunit LJY22_13820 PF16320 Ribosomal protein L7/L12 dimerisation domain LJY22_13820 PF00542 Ribosomal protein L7/L12 C-terminal domain LJY22_13825 PF00466 Ribosomal protein L10 LJY22_13830 PF00687 Ribosomal protein L1p/L10e family LJY22_13835 PF00298 Ribosomal protein L11, RNA binding domain LJY22_13835 PF03946 Ribosomal protein L11, N-terminal domain LJY22_13840 PF00467 KOW motif LJY22_13840 PF02357 Transcription termination factor nusG LJY22_13845 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LJY22_13850 PF03143 Elongation factor Tu C-terminal domain LJY22_13850 PF03144 Elongation factor Tu domain 2 LJY22_13850 PF00009 Elongation factor Tu GTP binding domain LJY22_13875 PF00485 Phosphoribulokinase / Uridine kinase family LJY22_13880 PF03099 Biotin/lipoate A/B protein ligase family LJY22_13880 PF02237 Biotin protein ligase C terminal domain LJY22_13880 PF08279 HTH domain LJY22_13885 PF01565 FAD binding domain LJY22_13885 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LJY22_13895 PF13091 PLD-like domain LJY22_13955 PF01177 Asp/Glu/Hydantoin racemase LJY22_13965 PF07715 TonB-dependent Receptor Plug Domain LJY22_13965 PF00593 TonB dependent receptor LJY22_13970 PF05958 tRNA (Uracil-5-)-methyltransferase LJY22_14025 PF04002 RadC-like JAB domain LJY22_14050 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LJY22_14050 PF11867 Domain of unknown function (DUF3387) LJY22_14050 PF18766 SWI2/SNF2 ATPase LJY22_14065 PF13538 UvrD-like helicase C-terminal domain LJY22_14065 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain LJY22_14065 PF14490 Helix-hairpin-helix containing domain LJY22_14075 PF01420 Type I restriction modification DNA specificity domain LJY22_14080 PF02384 N-6 DNA Methylase LJY22_14095 PF00072 Response regulator receiver domain LJY22_14095 PF00990 Diguanylate cyclase, GGDEF domain LJY22_14100 PF13185 GAF domain LJY22_14100 PF00990 Diguanylate cyclase, GGDEF domain LJY22_14100 PF00563 EAL domain LJY22_14110 PF04976 DMSO reductase anchor subunit (DmsC) LJY22_14115 PF13247 4Fe-4S dicluster domain LJY22_14115 PF12800 4Fe-4S binding domain LJY22_14120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LJY22_14120 PF00384 Molybdopterin oxidoreductase LJY22_14120 PF01568 Molydopterin dinucleotide binding domain LJY22_14125 PF02613 Nitrate reductase delta subunit LJY22_14130 PF12838 4Fe-4S dicluster domain LJY22_14130 PF00037 4Fe-4S binding domain LJY22_14135 PF00512 His Kinase A (phospho-acceptor) domain LJY22_14135 PF00072 Response regulator receiver domain LJY22_14135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_14135 PF09308 LuxQ, periplasmic LJY22_14145 PF00990 Diguanylate cyclase, GGDEF domain LJY22_14160 PF00440 Bacterial regulatory proteins, tetR family LJY22_14165 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_14165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LJY22_14170 PF01554 MatE LJY22_14175 PF04072 Leucine carboxyl methyltransferase LJY22_14180 PF00717 Peptidase S24-like LJY22_14180 PF01726 LexA DNA binding domain LJY22_14185 PF01553 Acyltransferase LJY22_14190 PF01040 UbiA prenyltransferase family LJY22_14195 PF04345 Chorismate lyase LJY22_14200 PF03748 Flagellar basal body-associated protein FliL LJY22_14205 PF01694 Rhomboid family LJY22_14205 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LJY22_14210 PF00581 Rhodanese-like domain LJY22_14215 PF00140 Sigma-70 factor, region 1.2 LJY22_14215 PF04542 Sigma-70 region 2 LJY22_14215 PF04545 Sigma-70, region 4 LJY22_14220 PF18075 FtsX extracellular domain LJY22_14225 PF00005 ABC transporter LJY22_14230 PF02881 SRP54-type protein, helical bundle domain LJY22_14230 PF00448 SRP54-type protein, GTPase domain LJY22_14245 PF01914 MarC family integral membrane protein LJY22_14265 PF10694 Protein of unknown function (DUF2500) LJY22_14285 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LJY22_14285 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LJY22_14290 PF01022 Bacterial regulatory protein, arsR family LJY22_14295 PF08668 HDOD domain LJY22_14295 PF00563 EAL domain LJY22_14300 PF01810 LysE type translocator LJY22_14305 PF12146 Serine aminopeptidase, S33 LJY22_14325 PF03942 DTW domain LJY22_14330 PF00563 EAL domain LJY22_14330 PF10442 FIST C domain LJY22_14330 PF08495 FIST N domain LJY22_14330 PF00990 Diguanylate cyclase, GGDEF domain LJY22_14335 PF13419 Haloacid dehalogenase-like hydrolase LJY22_14340 PF02899 Phage integrase, N-terminal SAM-like domain LJY22_14340 PF00589 Phage integrase family LJY22_14350 PF01678 Diaminopimelate epimerase LJY22_14355 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LJY22_14355 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LJY22_14365 PF01491 Frataxin-like domain LJY22_14370 PF12633 Adenylate cyclase NT domain LJY22_14370 PF01295 Adenylate cyclase, class-I LJY22_14375 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LJY22_14375 PF03900 Porphobilinogen deaminase, C-terminal domain LJY22_14380 PF02602 Uroporphyrinogen-III synthase HemD LJY22_14385 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LJY22_14390 PF07219 HemY protein N-terminus LJY22_14425 PF00175 Oxidoreductase NAD-binding domain LJY22_14430 PF00111 2Fe-2S iron-sulfur cluster binding domain LJY22_14435 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LJY22_14445 PF07497 Rho termination factor, RNA-binding domain LJY22_14445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LJY22_14445 PF07498 Rho termination factor, N-terminal domain LJY22_14450 PF00085 Thioredoxin LJY22_14455 PF00270 DEAD/DEAH box helicase LJY22_14455 PF00271 Helicase conserved C-terminal domain LJY22_14460 PF02541 Ppx/GppA phosphatase family LJY22_14465 PF02592 Putative vitamin uptake transporter LJY22_14475 PF09382 RQC domain LJY22_14475 PF00570 HRDC domain LJY22_14475 PF00271 Helicase conserved C-terminal domain LJY22_14475 PF16124 RecQ zinc-binding LJY22_14475 PF00270 DEAD/DEAH box helicase LJY22_14480 PF00892 EamA-like transporter family LJY22_14490 PF01810 LysE type translocator LJY22_14500 PF00580 UvrD/REP helicase N-terminal domain LJY22_14500 PF13361 UvrD-like helicase C-terminal domain LJY22_14510 PF05114 Protein of unknown function (DUF692) LJY22_14530 PF07690 Major Facilitator Superfamily LJY22_14535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_14535 PF03466 LysR substrate binding domain LJY22_14540 PF00557 Metallopeptidase family M24 LJY22_14540 PF01321 Creatinase/Prolidase N-terminal domain LJY22_14540 PF01321 Creatinase/Prolidase N-terminal domain LJY22_14540 PF00557 Metallopeptidase family M24 LJY22_14545 PF06968 Biotin and Thiamin Synthesis associated domain LJY22_14545 PF04055 Radical SAM superfamily LJY22_14550 PF05690 Thiazole biosynthesis protein ThiG LJY22_14555 PF02597 ThiS family LJY22_14560 PF00899 ThiF family LJY22_14565 PF02581 Thiamine monophosphate synthase LJY22_14570 PF13667 ThiC-associated domain LJY22_14570 PF01964 Radical SAM ThiC family LJY22_14575 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LJY22_14580 PF00394 Multicopper oxidase LJY22_14580 PF07731 Multicopper oxidase LJY22_14580 PF07732 Multicopper oxidase LJY22_14630 PF00132 Bacterial transferase hexapeptide (six repeats) LJY22_14635 PF07369 Protein of unknown function (DUF1488) LJY22_14640 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LJY22_14640 PF01488 Shikimate / quinate 5-dehydrogenase LJY22_14640 PF08501 Shikimate dehydrogenase substrate binding domain LJY22_14645 PF01218 Coproporphyrinogen III oxidase LJY22_14650 PF01300 Telomere recombination LJY22_14655 PF00731 AIR carboxylase LJY22_14660 PF02222 ATP-grasp domain LJY22_14660 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LJY22_14665 PF01396 Topoisomerase DNA binding C4 zinc finger LJY22_14670 PF04361 Protein of unknown function (DUF494) LJY22_14675 PF17782 DprA winged helix domain LJY22_14675 PF02481 DNA recombination-mediator protein A LJY22_14685 PF01327 Polypeptide deformylase LJY22_14690 PF02911 Formyl transferase, C-terminal domain LJY22_14690 PF00551 Formyl transferase LJY22_14695 PF01189 16S rRNA methyltransferase RsmB/F LJY22_14695 PF01029 NusB family LJY22_14700 PF02254 TrkA-N domain LJY22_14700 PF02080 TrkA-C domain LJY22_14705 PF02386 Cation transport protein LJY22_14715 PF03006 Haemolysin-III related LJY22_14720 PF07070 SpoOM protein LJY22_14730 PF06288 Protein of unknown function (DUF1040) LJY22_14735 PF12801 4Fe-4S binding domain LJY22_14735 PF13746 4Fe-4S dicluster domain LJY22_14735 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LJY22_14740 PF01636 Phosphotransferase enzyme family LJY22_14745 PF01323 DSBA-like thioredoxin domain LJY22_14750 PF01553 Acyltransferase LJY22_14765 PF07508 Recombinase LJY22_14765 PF13408 Recombinase zinc beta ribbon domain LJY22_14765 PF00239 Resolvase, N terminal domain LJY22_14780 PF02796 Helix-turn-helix domain of resolvase LJY22_14780 PF00239 Resolvase, N terminal domain LJY22_14795 PF00205 Thiamine pyrophosphate enzyme, central domain LJY22_14795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LJY22_14795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LJY22_14805 PF01063 Amino-transferase class IV LJY22_14810 PF00920 Dehydratase family LJY22_14815 PF00585 C-terminal regulatory domain of Threonine dehydratase LJY22_14815 PF00291 Pyridoxal-phosphate dependent enzyme LJY22_14820 PF03466 LysR substrate binding domain LJY22_14820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_14825 PF07690 Major Facilitator Superfamily LJY22_14830 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJY22_14835 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_14840 PF12804 MobA-like NTP transferase domain LJY22_14840 PF00132 Bacterial transferase hexapeptide (six repeats) LJY22_14845 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LJY22_14845 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LJY22_14850 PF02874 ATP synthase alpha/beta family, beta-barrel domain LJY22_14850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LJY22_14855 PF00231 ATP synthase LJY22_14860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LJY22_14860 PF00306 ATP synthase alpha/beta chain, C terminal domain LJY22_14860 PF02874 ATP synthase alpha/beta family, beta-barrel domain LJY22_14865 PF00213 ATP synthase delta (OSCP) subunit LJY22_14870 PF00430 ATP synthase B/B' CF(0) LJY22_14875 PF00137 ATP synthase subunit C LJY22_14880 PF00119 ATP synthase A chain LJY22_14885 PF03899 ATP synthase I chain LJY22_14890 PF02195 ParB-like nuclease domain LJY22_14890 PF17762 HTH domain found in ParB protein LJY22_14895 PF13614 AAA domain LJY22_14900 PF02527 rRNA small subunit methyltransferase G LJY22_14905 PF01134 Glucose inhibited division protein A LJY22_14905 PF13932 GidA associated domain LJY22_14910 PF00258 Flavodoxin LJY22_14915 PF12631 MnmE helical domain LJY22_14915 PF01926 50S ribosome-binding GTPase LJY22_14915 PF10396 GTP-binding protein TrmE N-terminus LJY22_14920 PF02096 60Kd inner membrane protein LJY22_14920 PF14849 YidC periplasmic domain LJY22_14925 PF01809 Putative membrane protein insertion efficiency factor LJY22_14930 PF00825 Ribonuclease P LJY22_14935 PF00468 Ribosomal protein L34 LJY22_14940 PF00005 ABC transporter LJY22_14945 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_14950 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJY22_14955 PF01568 Molydopterin dinucleotide binding domain LJY22_14955 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LJY22_14955 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LJY22_14955 PF13237 4Fe-4S dicluster domain LJY22_14955 PF00384 Molybdopterin oxidoreductase LJY22_14975 PF00005 ABC transporter LJY22_14985 PF10282 Lactonase, 7-bladed beta-propeller LJY22_14990 PF02567 Phenazine biosynthesis-like protein LJY22_14995 PF01161 Phosphatidylethanolamine-binding protein LJY22_15005 PF01758 Sodium Bile acid symporter family LJY22_15020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LJY22_15025 PF02378 Phosphotransferase system, EIIC LJY22_15025 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LJY22_15030 PF00107 Zinc-binding dehydrogenase LJY22_15030 PF08240 Alcohol dehydrogenase GroES-like domain LJY22_15060 PF03222 Tryptophan/tyrosine permease family LJY22_15070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_15070 PF00672 HAMP domain LJY22_15070 PF02743 Cache domain LJY22_15075 PF07670 Nucleoside recognition LJY22_15095 PF01476 LysM domain LJY22_15095 PF08525 Opacity-associated protein A N-terminal motif LJY22_15095 PF01551 Peptidase family M23 LJY22_15100 PF08448 PAS fold LJY22_15100 PF08447 PAS fold LJY22_15100 PF00990 Diguanylate cyclase, GGDEF domain LJY22_15100 PF00563 EAL domain LJY22_15105 PF03466 LysR substrate binding domain LJY22_15105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_15110 PF07690 Major Facilitator Superfamily LJY22_15120 PF00462 Glutaredoxin LJY22_15125 PF00892 EamA-like transporter family LJY22_15140 PF01557 Fumarylacetoacetate (FAA) hydrolase family LJY22_15155 PF12833 Helix-turn-helix domain LJY22_15160 PF01810 LysE type translocator LJY22_15170 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LJY22_15170 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LJY22_15170 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LJY22_15170 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LJY22_15175 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LJY22_15175 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LJY22_15180 PF00115 Cytochrome C and Quinol oxidase polypeptide I LJY22_15185 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 LJY22_15190 PF00510 Cytochrome c oxidase subunit III LJY22_15210 PF02628 Cytochrome oxidase assembly protein LJY22_15215 PF01040 UbiA prenyltransferase family LJY22_15220 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LJY22_15220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LJY22_15230 PF13488 Glycine zipper LJY22_15230 PF00691 OmpA family LJY22_15250 PF00313 'Cold-shock' DNA-binding domain LJY22_15255 PF03889 Alternative ribosome-rescue factor A LJY22_15260 PF00990 Diguanylate cyclase, GGDEF domain LJY22_15275 PF00005 ABC transporter LJY22_15275 PF02687 FtsX-like permease family LJY22_15275 PF12704 MacB-like periplasmic core domain LJY22_15280 PF02687 FtsX-like permease family LJY22_15280 PF00005 ABC transporter LJY22_15280 PF12704 MacB-like periplasmic core domain LJY22_15290 PF17200 Single Cache domain 2 LJY22_15290 PF00672 HAMP domain LJY22_15290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_15295 PF00210 Ferritin-like domain LJY22_15305 PF07995 Glucose / Sorbosone dehydrogenase LJY22_15310 PF00465 Iron-containing alcohol dehydrogenase LJY22_15325 PF00892 EamA-like transporter family LJY22_15335 PF03466 LysR substrate binding domain LJY22_15335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_15345 PF13193 AMP-binding enzyme C-terminal domain LJY22_15345 PF00501 AMP-binding enzyme LJY22_15350 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LJY22_15355 PF01329 Pterin 4 alpha carbinolamine dehydratase LJY22_15375 PF12843 Putative quorum-sensing-regulated virulence factor LJY22_15415 PF05922 Peptidase inhibitor I9 LJY22_15415 PF00082 Subtilase family LJY22_15415 PF04151 Bacterial pre-peptidase C-terminal domain LJY22_15440 PF01925 Sulfite exporter TauE/SafE LJY22_15450 PF00271 Helicase conserved C-terminal domain LJY22_15450 PF00270 DEAD/DEAH box helicase LJY22_15455 PF09905 DNA-binding protein VF530 LJY22_15465 PF00291 Pyridoxal-phosphate dependent enzyme LJY22_15470 PF08206 Ribonuclease B OB domain LJY22_15470 PF00575 S1 RNA binding domain LJY22_15470 PF00773 RNB domain LJY22_15470 PF08461 Ribonuclease R winged-helix domain LJY22_15470 PF17876 Cold shock domain LJY22_15475 PF00313 'Cold-shock' DNA-binding domain LJY22_15485 PF01470 Pyroglutamyl peptidase LJY22_15495 PF02492 CobW/HypB/UreG, nucleotide-binding domain LJY22_15495 PF07683 Cobalamin synthesis protein cobW C-terminal domain LJY22_15500 PF00270 DEAD/DEAH box helicase LJY22_15500 PF00271 Helicase conserved C-terminal domain LJY22_15520 PF12792 CSS motif domain associated with EAL LJY22_15520 PF00563 EAL domain LJY22_15525 PF00005 ABC transporter LJY22_15530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_15530 PF08447 PAS fold LJY22_15540 PF01575 MaoC like domain LJY22_15545 PF12849 PBP superfamily domain LJY22_15555 PF12833 Helix-turn-helix domain LJY22_15560 PF00575 S1 RNA binding domain LJY22_15560 PF00773 RNB domain LJY22_15560 PF08206 Ribonuclease B OB domain LJY22_15565 PF03880 DbpA RNA binding domain LJY22_15565 PF00270 DEAD/DEAH box helicase LJY22_15565 PF00271 Helicase conserved C-terminal domain LJY22_15570 PF03707 Bacterial signalling protein N terminal repeat LJY22_15570 PF00563 EAL domain LJY22_15570 PF00990 Diguanylate cyclase, GGDEF domain LJY22_15575 PF00871 Acetokinase family LJY22_15580 PF13426 PAS domain LJY22_15580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_15580 PF08447 PAS fold LJY22_15585 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_15590 PF00005 ABC transporter LJY22_15590 PF00571 CBS domain LJY22_15595 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_15600 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LJY22_15605 PF00795 Carbon-nitrogen hydrolase LJY22_15615 PF12833 Helix-turn-helix domain LJY22_15615 PF01965 DJ-1/PfpI family LJY22_15620 PF00561 alpha/beta hydrolase fold LJY22_15625 PF04909 Amidohydrolase LJY22_15630 PF02913 FAD linked oxidases, C-terminal domain LJY22_15630 PF13183 4Fe-4S dicluster domain LJY22_15630 PF01565 FAD binding domain LJY22_15640 PF10063 Uncharacterized integral membrane protein (DUF2301) LJY22_15645 PF00682 HMGL-like LJY22_15650 PF00378 Enoyl-CoA hydratase/isomerase LJY22_15655 PF01039 Carboxyl transferase domain LJY22_15660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LJY22_15660 PF02770 Acyl-CoA dehydrogenase, middle domain LJY22_15660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LJY22_15665 PF00376 MerR family regulatory protein LJY22_15665 PF09278 MerR, DNA binding LJY22_15670 PF02803 Thiolase, C-terminal domain LJY22_15670 PF00108 Thiolase, N-terminal domain LJY22_15675 PF00171 Aldehyde dehydrogenase family LJY22_15680 PF02770 Acyl-CoA dehydrogenase, middle domain LJY22_15680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LJY22_15680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LJY22_15685 PF00378 Enoyl-CoA hydratase/isomerase LJY22_15690 PF00378 Enoyl-CoA hydratase/isomerase LJY22_15695 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LJY22_15695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LJY22_15705 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LJY22_15705 PF06481 COX Aromatic Rich Motif LJY22_15710 PF00115 Cytochrome C and Quinol oxidase polypeptide I LJY22_15715 PF00510 Cytochrome c oxidase subunit III LJY22_15725 PF01040 UbiA prenyltransferase family LJY22_15735 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LJY22_15735 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_15740 PF01565 FAD binding domain LJY22_15740 PF08031 Berberine and berberine like LJY22_15755 PF00171 Aldehyde dehydrogenase family LJY22_15765 PF02028 BCCT, betaine/carnitine/choline family transporter LJY22_15795 PF00005 ABC transporter LJY22_15800 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJY22_15805 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_15810 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_15825 PF00691 OmpA family LJY22_15825 PF01389 OmpA-like transmembrane domain LJY22_15845 PF01012 Electron transfer flavoprotein domain LJY22_15845 PF00766 Electron transfer flavoprotein FAD-binding domain LJY22_15850 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LJY22_15850 PF02817 e3 binding domain LJY22_15850 PF00364 Biotin-requiring enzyme LJY22_15855 PF02779 Transketolase, pyrimidine binding domain LJY22_15855 PF02780 Transketolase, C-terminal domain LJY22_15860 PF00676 Dehydrogenase E1 component LJY22_15875 PF00012 Hsp70 protein LJY22_15880 PF04314 Copper chaperone PCu(A)C LJY22_15900 PF00072 Response regulator receiver domain LJY22_15900 PF00486 Transcriptional regulatory protein, C terminal LJY22_15920 PF01483 Proprotein convertase P-domain LJY22_15920 PF00082 Subtilase family LJY22_15930 PF00990 Diguanylate cyclase, GGDEF domain LJY22_15935 PF03222 Tryptophan/tyrosine permease family LJY22_15945 PF00384 Molybdopterin oxidoreductase LJY22_15945 PF01568 Molydopterin dinucleotide binding domain LJY22_15945 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LJY22_15950 PF10414 Sirohaem synthase dimerisation region LJY22_15950 PF14824 Sirohaem biosynthesis protein central LJY22_15950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LJY22_15955 PF02885 Glycosyl transferase family, helical bundle domain LJY22_15955 PF00591 Glycosyl transferase family, a/b domain LJY22_15960 PF01738 Dienelactone hydrolase family LJY22_15965 PF03861 ANTAR domain LJY22_15965 PF08376 Nitrate and nitrite sensing LJY22_15970 PF00005 ABC transporter LJY22_15975 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_15980 PF00005 ABC transporter LJY22_15985 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LJY22_15985 PF13806 Rieske-like [2Fe-2S] domain LJY22_15985 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_15985 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LJY22_15985 PF18267 Rubredoxin NAD+ reductase C-terminal domain LJY22_15985 PF04324 BFD-like [2Fe-2S] binding domain LJY22_16000 PF08361 MAATS-type transcriptional repressor, C-terminal region LJY22_16000 PF00440 Bacterial regulatory proteins, tetR family LJY22_16005 PF00043 Glutathione S-transferase, C-terminal domain LJY22_16005 PF13417 Glutathione S-transferase, N-terminal domain LJY22_16015 PF00072 Response regulator receiver domain LJY22_16015 PF00211 Adenylate and Guanylate cyclase catalytic domain LJY22_16035 PF03793 PASTA domain LJY22_16035 PF00069 Protein kinase domain LJY22_16050 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LJY22_16055 PF00691 OmpA family LJY22_16055 PF13677 Membrane MotB of proton-channel complex MotA/MotB LJY22_16060 PF06761 Intracellular multiplication and human macrophage-killing LJY22_16060 PF14331 ImcF-related N-terminal domain LJY22_16060 PF06744 Type VI secretion protein IcmF C-terminal LJY22_16080 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LJY22_16085 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LJY22_16090 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LJY22_16105 PF05947 Type VI secretion system, TssF LJY22_16115 PF07724 AAA domain (Cdc48 subfamily) LJY22_16115 PF10431 C-terminal, D2-small domain, of ClpB protein LJY22_16115 PF00004 ATPase family associated with various cellular activities (AAA) LJY22_16115 PF17871 AAA lid domain LJY22_16125 PF04717 Type VI secretion system, phage-baseplate injector LJY22_16125 PF06715 Gp5 C-terminal repeat (3 copies) LJY22_16140 PF00149 Calcineurin-like phosphoesterase LJY22_16140 PF12320 Type 5 capsule protein repressor C-terminal domain LJY22_16145 PF13476 AAA domain LJY22_16150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_16150 PF03466 LysR substrate binding domain LJY22_16160 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LJY22_16160 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LJY22_16165 PF03480 Bacterial extracellular solute-binding protein, family 7 LJY22_16170 PF01266 FAD dependent oxidoreductase LJY22_16180 PF04324 BFD-like [2Fe-2S] binding domain LJY22_16180 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_16185 PF01042 Endoribonuclease L-PSP LJY22_16195 PF08212 Lipocalin-like domain LJY22_16205 PF03606 C4-dicarboxylate anaerobic carrier LJY22_16210 PF00034 Cytochrome c LJY22_16215 PF01212 Beta-eliminating lyase LJY22_16225 PF07728 AAA domain (dynein-related subfamily) LJY22_16225 PF17868 AAA lid domain LJY22_16225 PF12592 Protein of unknown function (DUF3763) LJY22_16230 PF05762 VWA domain containing CoxE-like protein LJY22_16245 PF03466 LysR substrate binding domain LJY22_16245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_16250 PF09330 D-lactate dehydrogenase, membrane binding LJY22_16250 PF01565 FAD binding domain LJY22_16265 PF01168 Alanine racemase, N-terminal domain LJY22_16265 PF00842 Alanine racemase, C-terminal domain LJY22_16270 PF00672 HAMP domain LJY22_16270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_16285 PF09154 Domain of unknown function (DUF1939) LJY22_16285 PF00128 Alpha amylase, catalytic domain LJY22_16335 PF13426 PAS domain LJY22_16335 PF00563 EAL domain LJY22_16335 PF00990 Diguanylate cyclase, GGDEF domain LJY22_16340 PF01272 Transcription elongation factor, GreA/GreB, C-term LJY22_16340 PF14760 Rnk N-terminus LJY22_16345 PF18267 Rubredoxin NAD+ reductase C-terminal domain LJY22_16345 PF04324 BFD-like [2Fe-2S] binding domain LJY22_16345 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LJY22_16345 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_16345 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LJY22_16350 PF13806 Rieske-like [2Fe-2S] domain LJY22_16355 PF01226 Formate/nitrite transporter LJY22_16360 PF10414 Sirohaem synthase dimerisation region LJY22_16360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LJY22_16360 PF14824 Sirohaem biosynthesis protein central LJY22_16375 PF03605 Anaerobic c4-dicarboxylate membrane transporter LJY22_16385 PF07715 TonB-dependent Receptor Plug Domain LJY22_16385 PF00593 TonB dependent receptor LJY22_16400 PF11756 Nitrous oxide-stimulated promoter LJY22_16405 PF07690 Major Facilitator Superfamily LJY22_16410 PF00085 Thioredoxin LJY22_16415 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LJY22_16415 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LJY22_16435 PF01238 Phosphomannose isomerase type I LJY22_16440 PF07690 Major Facilitator Superfamily LJY22_16445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_16445 PF05231 MASE1 LJY22_16445 PF07730 Histidine kinase LJY22_16450 PF00196 Bacterial regulatory proteins, luxR family LJY22_16450 PF00072 Response regulator receiver domain LJY22_16455 PF07690 Major Facilitator Superfamily LJY22_16460 PF02634 FdhD/NarQ family LJY22_16465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_16465 PF03466 LysR substrate binding domain LJY22_16470 PF00384 Molybdopterin oxidoreductase LJY22_16480 PF02567 Phenazine biosynthesis-like protein LJY22_16485 PF01177 Asp/Glu/Hydantoin racemase LJY22_16490 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_16490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LJY22_16505 PF04143 Sulphur transport LJY22_16515 PF00873 AcrB/AcrD/AcrF family LJY22_16520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJY22_16530 PF13597 Anaerobic ribonucleoside-triphosphate reductase LJY22_16530 PF03477 ATP cone domain LJY22_16540 PF01554 MatE LJY22_16545 PF12852 Cupin LJY22_16545 PF12833 Helix-turn-helix domain LJY22_16550 PF00155 Aminotransferase class I and II LJY22_16555 PF18030 RimK PreATP-grasp domain LJY22_16555 PF08443 RimK-like ATP-grasp domain LJY22_16565 PF04076 Bacterial OB fold (BOF) protein LJY22_16570 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LJY22_16570 PF07685 CobB/CobQ-like glutamine amidotransferase domain LJY22_16580 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_16585 PF00005 ABC transporter LJY22_16585 PF03459 TOBE domain LJY22_16595 PF01590 GAF domain LJY22_16595 PF00360 Phytochrome region LJY22_16595 PF00990 Diguanylate cyclase, GGDEF domain LJY22_16595 PF00563 EAL domain LJY22_16605 PF00990 Diguanylate cyclase, GGDEF domain LJY22_16620 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LJY22_16620 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LJY22_16620 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LJY22_16625 PF02233 NAD(P) transhydrogenase beta subunit LJY22_16635 PF00072 Response regulator receiver domain LJY22_16635 PF00486 Transcriptional regulatory protein, C terminal LJY22_16650 PF03701 Uncharacterised protein family (UPF0181) LJY22_16655 PF00582 Universal stress protein family LJY22_16665 PF03466 LysR substrate binding domain LJY22_16665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_16680 PF01253 Translation initiation factor SUI1 LJY22_16690 PF07478 D-ala D-ala ligase C-terminus LJY22_16690 PF01820 D-ala D-ala ligase N-terminus LJY22_16695 PF05036 Sporulation related domain LJY22_16700 PF13380 CoA binding domain LJY22_16700 PF00583 Acetyltransferase (GNAT) family LJY22_16700 PF13607 Succinyl-CoA ligase like flavodoxin domain LJY22_16705 PF03466 LysR substrate binding domain LJY22_16705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_16710 PF07715 TonB-dependent Receptor Plug Domain LJY22_16710 PF00593 TonB dependent receptor LJY22_16715 PF16363 GDP-mannose 4,6 dehydratase LJY22_16720 PF08448 PAS fold LJY22_16720 PF00563 EAL domain LJY22_16720 PF00990 Diguanylate cyclase, GGDEF domain LJY22_16720 PF05231 MASE1 LJY22_16720 PF08447 PAS fold LJY22_16720 PF13426 PAS domain LJY22_16725 PF03746 LamB/YcsF family LJY22_16730 PF02682 Carboxyltransferase domain, subdomain C and D LJY22_16735 PF02626 Carboxyltransferase domain, subdomain A and B LJY22_16750 PF00005 ABC transporter LJY22_16755 PF13472 GDSL-like Lipase/Acylhydrolase family LJY22_16760 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LJY22_16760 PF07055 Enoyl reductase FAD binding domain LJY22_16760 PF12241 Trans-2-enoyl-CoA reductase catalytic region LJY22_16765 PF00563 EAL domain LJY22_16765 PF00498 FHA domain LJY22_16765 PF00990 Diguanylate cyclase, GGDEF domain LJY22_16775 PF00226 DnaJ domain LJY22_16775 PF00684 DnaJ central domain LJY22_16775 PF01556 DnaJ C terminal domain LJY22_16800 PF12793 Sugar transport-related sRNA regulator N-term LJY22_16800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJY22_16810 PF03061 Thioesterase superfamily LJY22_16825 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LJY22_16830 PF12262 Bacterial virulence factor lipase N-terminal LJY22_16850 PF03741 Integral membrane protein TerC family LJY22_16855 PF02872 5'-nucleotidase, C-terminal domain LJY22_16855 PF00149 Calcineurin-like phosphoesterase LJY22_16860 PF11398 Protein of unknown function (DUF2813) LJY22_16865 PF06496 Protein of unknown function (DUF1097) LJY22_16870 PF03466 LysR substrate binding domain LJY22_16870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_16875 PF01226 Formate/nitrite transporter LJY22_16880 PF04264 YceI-like domain LJY22_16885 PF01292 Prokaryotic cytochrome b561 LJY22_16900 PF12792 CSS motif domain associated with EAL LJY22_16900 PF00563 EAL domain LJY22_16905 PF00271 Helicase conserved C-terminal domain LJY22_16905 PF00270 DEAD/DEAH box helicase LJY22_16910 PF04336 Acyl carrier protein phosphodiesterase LJY22_16915 PF00672 HAMP domain LJY22_16915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_16915 PF12729 Four helix bundle sensory module for signal transduction LJY22_16920 PF13419 Haloacid dehalogenase-like hydrolase LJY22_16935 PF00294 pfkB family carbohydrate kinase LJY22_16940 PF01268 Formate--tetrahydrofolate ligase LJY22_16945 PF00483 Nucleotidyl transferase LJY22_16950 PF00704 Glycosyl hydrolases family 18 LJY22_16950 PF06483 Chitinase C LJY22_16955 PF12833 Helix-turn-helix domain LJY22_16955 PF06719 AraC-type transcriptional regulator N-terminus LJY22_16960 PF00465 Iron-containing alcohol dehydrogenase LJY22_16970 PF00005 ABC transporter LJY22_16975 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_16980 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJY22_16985 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_16990 PF00989 PAS fold LJY22_16990 PF01590 GAF domain LJY22_16990 PF00563 EAL domain LJY22_16990 PF00990 Diguanylate cyclase, GGDEF domain LJY22_17005 PF00356 Bacterial regulatory proteins, lacI family LJY22_17005 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LJY22_17010 PF00381 PTS HPr component phosphorylation site LJY22_17010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LJY22_17015 PF00294 pfkB family carbohydrate kinase LJY22_17020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LJY22_17020 PF02378 Phosphotransferase system, EIIC LJY22_17030 PF00873 AcrB/AcrD/AcrF family LJY22_17040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJY22_17050 PF01571 Aminomethyltransferase folate-binding domain LJY22_17050 PF08669 Glycine cleavage T-protein C-terminal barrel domain LJY22_17060 PF00464 Serine hydroxymethyltransferase LJY22_17065 PF01597 Glycine cleavage H-protein LJY22_17070 PF02347 Glycine cleavage system P-protein LJY22_17075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJY22_17080 PF02627 Carboxymuconolactone decarboxylase family LJY22_17085 PF12833 Helix-turn-helix domain LJY22_17105 PF07733 Bacterial DNA polymerase III alpha NTPase domain LJY22_17105 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LJY22_17105 PF11490 DNA polymerase III polC-type N-terminus II LJY22_17105 PF00929 Exonuclease LJY22_17105 PF02811 PHP domain LJY22_17105 PF14579 Helix-hairpin-helix motif LJY22_17110 PF00664 ABC transporter transmembrane region LJY22_17110 PF00005 ABC transporter LJY22_17130 PF02253 Phospholipase A1 LJY22_17140 PF00376 MerR family regulatory protein LJY22_17140 PF09278 MerR, DNA binding LJY22_17145 PF01327 Polypeptide deformylase LJY22_17175 PF01769 Divalent cation transporter LJY22_17175 PF00571 CBS domain LJY22_17175 PF03448 MgtE intracellular N domain LJY22_17195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJY22_17200 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LJY22_17210 PF01757 Acyltransferase family LJY22_17220 PF09722 Protein of unknown function (DUF2384) LJY22_17225 PF00141 Peroxidase LJY22_17230 PF13187 4Fe-4S dicluster domain LJY22_17230 PF01645 Conserved region in glutamate synthase LJY22_17240 PF00171 Aldehyde dehydrogenase family LJY22_17255 PF00892 EamA-like transporter family LJY22_17260 PF00893 Small Multidrug Resistance protein LJY22_17265 PF03413 Peptidase propeptide and YPEB domain LJY22_17265 PF01447 Thermolysin metallopeptidase, catalytic domain LJY22_17265 PF02868 Thermolysin metallopeptidase, alpha-helical domain LJY22_17265 PF07504 Fungalysin/Thermolysin Propeptide Motif LJY22_17265 PF04151 Bacterial pre-peptidase C-terminal domain LJY22_17285 PF00892 EamA-like transporter family LJY22_17295 PF07963 Prokaryotic N-terminal methylation motif LJY22_17295 PF08334 Type II secretion system (T2SS), protein G LJY22_17300 PF00072 Response regulator receiver domain LJY22_17300 PF01584 CheW-like domain LJY22_17305 PF00196 Bacterial regulatory proteins, luxR family LJY22_17305 PF00072 Response regulator receiver domain LJY22_17315 PF00990 Diguanylate cyclase, GGDEF domain LJY22_17315 PF08448 PAS fold LJY22_17325 PF00563 EAL domain LJY22_17325 PF00990 Diguanylate cyclase, GGDEF domain LJY22_17325 PF03707 Bacterial signalling protein N terminal repeat LJY22_17325 PF13188 PAS domain LJY22_17330 PF01926 50S ribosome-binding GTPase LJY22_17335 PF00155 Aminotransferase class I and II LJY22_17340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_17340 PF00072 Response regulator receiver domain LJY22_17350 PF00814 Glycoprotease family LJY22_17350 PF00583 Acetyltransferase (GNAT) family LJY22_17360 PF03606 C4-dicarboxylate anaerobic carrier LJY22_17365 PF04011 LemA family LJY22_17370 PF01435 Peptidase family M48 LJY22_17385 PF08774 VRR-NUC domain LJY22_17385 PF18081 Fanconi anemia-associated nuclease SAP domain LJY22_17395 PF04076 Bacterial OB fold (BOF) protein LJY22_17400 PF00781 Diacylglycerol kinase catalytic domain LJY22_17405 PF03466 LysR substrate binding domain LJY22_17405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_17410 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LJY22_17410 PF01872 RibD C-terminal domain LJY22_17440 PF07726 ATPase family associated with various cellular activities (AAA) LJY22_17440 PF17863 AAA lid domain LJY22_17445 PF04055 Radical SAM superfamily LJY22_17445 PF13186 Iron-sulfur cluster-binding domain LJY22_17450 PF16385 Domain of unknown function LJY22_17450 PF00884 Sulfatase LJY22_17455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_17455 PF03466 LysR substrate binding domain LJY22_17460 PF00884 Sulfatase LJY22_17465 PF00072 Response regulator receiver domain LJY22_17465 PF00486 Transcriptional regulatory protein, C terminal LJY22_17480 PF00072 Response regulator receiver domain LJY22_17480 PF00672 HAMP domain LJY22_17480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_17480 PF00512 His Kinase A (phospho-acceptor) domain LJY22_17480 PF01627 Hpt domain LJY22_17485 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LJY22_17490 PF02142 MGS-like domain LJY22_17495 PF13361 UvrD-like helicase C-terminal domain LJY22_17495 PF00580 UvrD/REP helicase N-terminal domain LJY22_17495 PF12462 DNA helicase IV / RNA helicase N terminal LJY22_17500 PF12805 FUSC-like inner membrane protein yccS LJY22_17530 PF07715 TonB-dependent Receptor Plug Domain LJY22_17530 PF00593 TonB dependent receptor LJY22_17535 PF12833 Helix-turn-helix domain LJY22_17540 PF13411 MerR HTH family regulatory protein LJY22_17545 PF00005 ABC transporter LJY22_17550 PF01032 FecCD transport family LJY22_17555 PF01032 FecCD transport family LJY22_17560 PF01497 Periplasmic binding protein LJY22_17570 PF01048 Phosphorylase superfamily LJY22_17575 PF04973 Nicotinamide mononucleotide transporter LJY22_17580 PF00356 Bacterial regulatory proteins, lacI family LJY22_17585 PF00294 pfkB family carbohydrate kinase LJY22_17590 PF13407 Periplasmic binding protein domain LJY22_17595 PF02653 Branched-chain amino acid transport system / permease component LJY22_17600 PF00005 ABC transporter LJY22_17605 PF05025 RbsD / FucU transport protein family LJY22_17610 PF00990 Diguanylate cyclase, GGDEF domain LJY22_17610 PF00563 EAL domain LJY22_17645 PF04116 Fatty acid hydroxylase superfamily LJY22_17655 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LJY22_17655 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LJY22_17665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_17665 PF00072 Response regulator receiver domain LJY22_17665 PF00512 His Kinase A (phospho-acceptor) domain LJY22_17665 PF09308 LuxQ, periplasmic LJY22_17670 PF03150 Di-haem cytochrome c peroxidase LJY22_17670 PF00034 Cytochrome c LJY22_17675 PF00563 EAL domain LJY22_17675 PF00990 Diguanylate cyclase, GGDEF domain LJY22_17675 PF03707 Bacterial signalling protein N terminal repeat LJY22_17675 PF13188 PAS domain LJY22_17685 PF01145 SPFH domain / Band 7 family LJY22_17685 PF16200 C-terminal region of band_7 LJY22_17695 PF00881 Nitroreductase family LJY22_17700 PF00005 ABC transporter LJY22_17700 PF00571 CBS domain LJY22_17705 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_17710 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LJY22_17715 PF00732 GMC oxidoreductase LJY22_17715 PF05199 GMC oxidoreductase LJY22_17720 PF00171 Aldehyde dehydrogenase family LJY22_17725 PF13977 BetI-type transcriptional repressor, C-terminal LJY22_17725 PF00440 Bacterial regulatory proteins, tetR family LJY22_17730 PF00990 Diguanylate cyclase, GGDEF domain LJY22_17730 PF00072 Response regulator receiver domain LJY22_17740 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LJY22_17740 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LJY22_17750 PF00378 Enoyl-CoA hydratase/isomerase LJY22_17755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LJY22_17755 PF02770 Acyl-CoA dehydrogenase, middle domain LJY22_17755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LJY22_17760 PF00171 Aldehyde dehydrogenase family LJY22_17765 PF00108 Thiolase, N-terminal domain LJY22_17765 PF02803 Thiolase, C-terminal domain LJY22_17770 PF00376 MerR family regulatory protein LJY22_17770 PF09278 MerR, DNA binding LJY22_17775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LJY22_17775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LJY22_17775 PF02770 Acyl-CoA dehydrogenase, middle domain LJY22_17780 PF01039 Carboxyl transferase domain LJY22_17785 PF00378 Enoyl-CoA hydratase/isomerase LJY22_17790 PF00289 Biotin carboxylase, N-terminal domain LJY22_17790 PF02785 Biotin carboxylase C-terminal domain LJY22_17790 PF18140 Propionyl-coenzyme A carboxylase BT domain LJY22_17790 PF00364 Biotin-requiring enzyme LJY22_17790 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LJY22_17795 PF00682 HMGL-like LJY22_17800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_17800 PF00512 His Kinase A (phospho-acceptor) domain LJY22_17800 PF01627 Hpt domain LJY22_17800 PF00072 Response regulator receiver domain LJY22_17800 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LJY22_17800 PF00672 HAMP domain LJY22_17820 PF00155 Aminotransferase class I and II LJY22_17820 PF00392 Bacterial regulatory proteins, gntR family LJY22_17825 PF01654 Cytochrome bd terminal oxidase subunit I LJY22_17830 PF02322 Cytochrome bd terminal oxidase subunit II LJY22_17840 PF02567 Phenazine biosynthesis-like protein LJY22_17850 PF13419 Haloacid dehalogenase-like hydrolase LJY22_17855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_17855 PF03466 LysR substrate binding domain LJY22_17860 PF03306 Alpha-acetolactate decarboxylase LJY22_17865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LJY22_17865 PF00205 Thiamine pyrophosphate enzyme, central domain LJY22_17865 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LJY22_17875 PF02028 BCCT, betaine/carnitine/choline family transporter LJY22_17885 PF00501 AMP-binding enzyme LJY22_17885 PF14535 AMP-binding enzyme C-terminal domain LJY22_17890 PF00005 ABC transporter LJY22_17915 PF00005 ABC transporter LJY22_17915 PF12399 Branched-chain amino acid ATP-binding cassette transporter LJY22_17925 PF01012 Electron transfer flavoprotein domain LJY22_17930 PF01012 Electron transfer flavoprotein domain LJY22_17930 PF00766 Electron transfer flavoprotein FAD-binding domain LJY22_17935 PF00501 AMP-binding enzyme LJY22_17935 PF13193 AMP-binding enzyme C-terminal domain LJY22_17940 PF03334 Na+/H+ antiporter subunit LJY22_17945 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LJY22_17950 PF01899 Na+/H+ ion antiporter subunit LJY22_17955 PF00361 Proton-conducting membrane transporter LJY22_17960 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LJY22_17965 PF13244 Domain of unknown function (DUF4040) LJY22_17965 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LJY22_17965 PF00361 Proton-conducting membrane transporter LJY22_17965 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LJY22_17975 PF00582 Universal stress protein family LJY22_17980 PF00106 short chain dehydrogenase LJY22_17985 PF03466 LysR substrate binding domain LJY22_17985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_17995 PF07690 Major Facilitator Superfamily LJY22_18000 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LJY22_18020 PF00182 Chitinase class I LJY22_18035 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LJY22_18065 PF01037 Lrp/AsnC ligand binding domain LJY22_18075 PF05947 Type VI secretion system, TssF LJY22_18085 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LJY22_18100 PF00069 Protein kinase domain LJY22_18125 PF04717 Type VI secretion system, phage-baseplate injector LJY22_18130 PF05638 Type VI secretion system effector, Hcp LJY22_18135 PF17871 AAA lid domain LJY22_18135 PF00004 ATPase family associated with various cellular activities (AAA) LJY22_18135 PF07724 AAA domain (Cdc48 subfamily) LJY22_18135 PF10431 C-terminal, D2-small domain, of ClpB protein LJY22_18140 PF00158 Sigma-54 interaction domain LJY22_18140 PF02954 Bacterial regulatory protein, Fis family LJY22_18140 PF00072 Response regulator receiver domain LJY22_18165 PF08525 Opacity-associated protein A N-terminal motif LJY22_18165 PF01551 Peptidase family M23 LJY22_18165 PF01476 LysM domain LJY22_18170 PF03466 LysR substrate binding domain LJY22_18170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_18175 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LJY22_18175 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LJY22_18175 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LJY22_18180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LJY22_18185 PF00132 Bacterial transferase hexapeptide (six repeats) LJY22_18190 PF00144 Beta-lactamase LJY22_18195 PF00155 Aminotransferase class I and II LJY22_18195 PF00392 Bacterial regulatory proteins, gntR family LJY22_18210 PF01370 NAD dependent epimerase/dehydratase family LJY22_18210 PF02911 Formyl transferase, C-terminal domain LJY22_18210 PF00551 Formyl transferase LJY22_18230 PF01565 FAD binding domain LJY22_18230 PF08031 Berberine and berberine like LJY22_18240 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family LJY22_18245 PF00478 IMP dehydrogenase / GMP reductase domain LJY22_18250 PF03853 YjeF-related protein N-terminus LJY22_18250 PF01256 Carbohydrate kinase LJY22_18260 PF00072 Response regulator receiver domain LJY22_18265 PF00248 Aldo/keto reductase family LJY22_18280 PF00654 Voltage gated chloride channel LJY22_18290 PF01566 Natural resistance-associated macrophage protein LJY22_18295 PF01227 GTP cyclohydrolase I LJY22_18300 PF03454 MoeA C-terminal region (domain IV) LJY22_18300 PF03453 MoeA N-terminal region (domain I and II) LJY22_18300 PF00994 Probable molybdopterin binding domain LJY22_18305 PF00899 ThiF family LJY22_18325 PF00581 Rhodanese-like domain LJY22_18330 PF00990 Diguanylate cyclase, GGDEF domain LJY22_18330 PF03707 Bacterial signalling protein N terminal repeat LJY22_18330 PF00563 EAL domain LJY22_18335 PF08329 Chitinase A, N-terminal domain LJY22_18335 PF00704 Glycosyl hydrolases family 18 LJY22_18345 PF00923 Transaldolase/Fructose-6-phosphate aldolase LJY22_18350 PF02780 Transketolase, C-terminal domain LJY22_18350 PF02779 Transketolase, pyrimidine binding domain LJY22_18350 PF00456 Transketolase, thiamine diphosphate binding domain LJY22_18355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_18355 PF08447 PAS fold LJY22_18360 PF07690 Major Facilitator Superfamily LJY22_18365 PF00793 DAHP synthetase I family LJY22_18370 PF00691 OmpA family LJY22_18370 PF01389 OmpA-like transmembrane domain LJY22_18375 PF13419 Haloacid dehalogenase-like hydrolase LJY22_18380 PF00472 RF-1 domain LJY22_18385 PF00672 HAMP domain LJY22_18385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_18385 PF17200 Single Cache domain 2 LJY22_18390 PF00873 AcrB/AcrD/AcrF family LJY22_18395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJY22_18400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LJY22_18405 PF07687 Peptidase dimerisation domain LJY22_18405 PF01546 Peptidase family M20/M25/M40 LJY22_18420 PF00072 Response regulator receiver domain LJY22_18420 PF00196 Bacterial regulatory proteins, luxR family LJY22_18425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_18425 PF07730 Histidine kinase LJY22_18425 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LJY22_18425 PF00672 HAMP domain LJY22_18430 PF12838 4Fe-4S dicluster domain LJY22_18430 PF13187 4Fe-4S dicluster domain LJY22_18440 PF01568 Molydopterin dinucleotide binding domain LJY22_18440 PF00384 Molybdopterin oxidoreductase LJY22_18440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LJY22_18445 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LJY22_18450 PF03264 NapC/NirT cytochrome c family, N-terminal region LJY22_18460 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LJY22_18470 PF02803 Thiolase, C-terminal domain LJY22_18470 PF00108 Thiolase, N-terminal domain LJY22_18475 PF00106 short chain dehydrogenase LJY22_18480 PF01810 LysE type translocator LJY22_18490 PF07549 SecD/SecF GG Motif LJY22_18490 PF02355 Protein export membrane protein LJY22_18495 PF02355 Protein export membrane protein LJY22_18495 PF07549 SecD/SecF GG Motif LJY22_18495 PF13721 SecD export protein N-terminal TM region LJY22_18520 PF01037 Lrp/AsnC ligand binding domain LJY22_18540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJY22_18540 PF00529 HlyD membrane-fusion protein of T1SS LJY22_18550 PF09308 LuxQ, periplasmic LJY22_18550 PF00072 Response regulator receiver domain LJY22_18550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_18550 PF00512 His Kinase A (phospho-acceptor) domain LJY22_18555 PF13407 Periplasmic binding protein domain LJY22_18560 PF01541 GIY-YIG catalytic domain LJY22_18565 PF04337 Protein of unknown function, DUF480 LJY22_18575 PF04363 Protein of unknown function (DUF496) LJY22_18580 PF01554 MatE LJY22_18585 PF01627 Hpt domain LJY22_18585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_18585 PF00672 HAMP domain LJY22_18585 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LJY22_18585 PF00072 Response regulator receiver domain LJY22_18585 PF00512 His Kinase A (phospho-acceptor) domain LJY22_18590 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LJY22_18590 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LJY22_18605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_18605 PF03466 LysR substrate binding domain LJY22_18615 PF13520 Amino acid permease LJY22_18620 PF00392 Bacterial regulatory proteins, gntR family LJY22_18620 PF00155 Aminotransferase class I and II LJY22_18630 PF00512 His Kinase A (phospho-acceptor) domain LJY22_18630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_18630 PF00672 HAMP domain LJY22_18630 PF16527 Two-component sensor protein CpxA, periplasmic domain LJY22_18635 PF00072 Response regulator receiver domain LJY22_18635 PF00486 Transcriptional regulatory protein, C terminal LJY22_18660 PF00529 HlyD membrane-fusion protein of T1SS LJY22_18660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJY22_18665 PF03109 ABC1 family LJY22_18670 PF03448 MgtE intracellular N domain LJY22_18670 PF01769 Divalent cation transporter LJY22_18670 PF00571 CBS domain LJY22_18675 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LJY22_18680 PF07969 Amidohydrolase family LJY22_18685 PF01966 HD domain LJY22_18695 PF07690 Major Facilitator Superfamily LJY22_18705 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LJY22_18710 PF00255 Glutathione peroxidase LJY22_18725 PF01323 DSBA-like thioredoxin domain LJY22_18740 PF00072 Response regulator receiver domain LJY22_18740 PF00486 Transcriptional regulatory protein, C terminal LJY22_18745 PF00512 His Kinase A (phospho-acceptor) domain LJY22_18745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_18745 PF00672 HAMP domain LJY22_18745 PF16527 Two-component sensor protein CpxA, periplasmic domain LJY22_18755 PF01219 Prokaryotic diacylglycerol kinase LJY22_18760 PF08019 Phosphoethanolamine transferase EptA/EptB LJY22_18760 PF00884 Sulfatase LJY22_18765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LJY22_18780 PF01734 Patatin-like phospholipase LJY22_18785 PF05726 Pirin C-terminal cupin domain LJY22_18785 PF02678 Pirin LJY22_18790 PF00313 'Cold-shock' DNA-binding domain LJY22_18805 PF00962 Adenosine/AMP deaminase LJY22_18810 PF08534 Redoxin LJY22_18810 PF00462 Glutaredoxin LJY22_18820 PF07943 Penicillin-binding protein 5, C-terminal domain LJY22_18820 PF00768 D-alanyl-D-alanine carboxypeptidase LJY22_18825 PF02798 Glutathione S-transferase, N-terminal domain LJY22_18830 PF08244 Glycosyl hydrolases family 32 C terminal LJY22_18830 PF00251 Glycosyl hydrolases family 32 N-terminal domain LJY22_18835 PF00294 pfkB family carbohydrate kinase LJY22_18840 PF00367 phosphotransferase system, EIIB LJY22_18840 PF02378 Phosphotransferase system, EIIC LJY22_18845 PF00356 Bacterial regulatory proteins, lacI family LJY22_18850 PF02264 LamB porin LJY22_18850 PF11471 Maltoporin periplasmic N-terminal extension LJY22_18895 PF12833 Helix-turn-helix domain LJY22_18895 PF01497 Periplasmic binding protein LJY22_18900 PF00155 Aminotransferase class I and II LJY22_18925 PF00535 Glycosyl transferase family 2 LJY22_18935 PF00270 DEAD/DEAH box helicase LJY22_18935 PF00271 Helicase conserved C-terminal domain LJY22_18945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_18945 PF03466 LysR substrate binding domain LJY22_18950 PF03466 LysR substrate binding domain LJY22_18950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_18960 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LJY22_18965 PF08240 Alcohol dehydrogenase GroES-like domain LJY22_18965 PF00107 Zinc-binding dehydrogenase LJY22_18980 PF12833 Helix-turn-helix domain LJY22_18985 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LJY22_18990 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LJY22_18995 PF00392 Bacterial regulatory proteins, gntR family LJY22_18995 PF00155 Aminotransferase class I and II LJY22_19000 PF01321 Creatinase/Prolidase N-terminal domain LJY22_19000 PF00557 Metallopeptidase family M24 LJY22_19005 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LJY22_19010 PF03480 Bacterial extracellular solute-binding protein, family 7 LJY22_19015 PF01037 Lrp/AsnC ligand binding domain LJY22_19020 PF00171 Aldehyde dehydrogenase family LJY22_19025 PF00202 Aminotransferase class-III LJY22_19030 PF00291 Pyridoxal-phosphate dependent enzyme LJY22_19035 PF02423 Ornithine cyclodeaminase/mu-crystallin family LJY22_19045 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LJY22_19050 PF01810 LysE type translocator LJY22_19060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_19060 PF03466 LysR substrate binding domain LJY22_19065 PF00709 Adenylosuccinate synthetase LJY22_19070 PF00710 Asparaginase, N-terminal LJY22_19070 PF17763 Glutaminase/Asparaginase C-terminal domain LJY22_19075 PF03618 Kinase/pyrophosphorylase LJY22_19080 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LJY22_19080 PF02896 PEP-utilising enzyme, TIM barrel domain LJY22_19080 PF00391 PEP-utilising enzyme, mobile domain LJY22_19095 PF00579 tRNA synthetases class I (W and Y) LJY22_19105 PF03466 LysR substrate binding domain LJY22_19105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_19110 PF13533 Biotin-lipoyl like LJY22_19115 PF00873 AcrB/AcrD/AcrF family LJY22_19130 PF02837 Glycosyl hydrolases family 2, sugar binding domain LJY22_19130 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LJY22_19130 PF00703 Glycosyl hydrolases family 2 LJY22_19130 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 LJY22_19135 PF02028 BCCT, betaine/carnitine/choline family transporter LJY22_19140 PF07702 UTRA domain LJY22_19140 PF00392 Bacterial regulatory proteins, gntR family LJY22_19165 PF08402 TOBE domain LJY22_19165 PF00005 ABC transporter LJY22_19180 PF00873 AcrB/AcrD/AcrF family LJY22_19190 PF13091 PLD-like domain LJY22_19215 PF00376 MerR family regulatory protein LJY22_19215 PF09278 MerR, DNA binding LJY22_19225 PF03466 LysR substrate binding domain LJY22_19225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_19235 PF13378 Enolase C-terminal domain-like LJY22_19235 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LJY22_19240 PF00679 Elongation factor G C-terminus LJY22_19240 PF14492 Elongation Factor G, domain II LJY22_19240 PF03764 Elongation factor G, domain IV LJY22_19240 PF00009 Elongation factor Tu GTP binding domain LJY22_19240 PF03144 Elongation factor Tu domain 2 LJY22_19265 PF02001 Protein of unknown function DUF134 LJY22_19270 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_19275 PF00005 ABC transporter LJY22_19275 PF00571 CBS domain LJY22_19280 PF04170 NlpE N-terminal domain LJY22_19280 PF17185 NlpE C-terminal OB domain LJY22_19285 PF06629 MltA-interacting protein MipA LJY22_19300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_19300 PF03466 LysR substrate binding domain LJY22_19325 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LJY22_19325 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LJY22_19335 PF00857 Isochorismatase family LJY22_19345 PF08220 DeoR-like helix-turn-helix domain LJY22_19345 PF00455 DeoR C terminal sensor domain LJY22_19350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJY22_19355 PF01641 SelR domain LJY22_19355 PF01625 Peptide methionine sulfoxide reductase LJY22_19370 PF03060 Nitronate monooxygenase LJY22_19375 PF13520 Amino acid permease LJY22_19380 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LJY22_19385 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LJY22_19390 PF12833 Helix-turn-helix domain LJY22_19395 PF00440 Bacterial regulatory proteins, tetR family LJY22_19395 PF08359 YsiA-like protein, C-terminal region LJY22_19425 PF00118 TCP-1/cpn60 chaperonin family LJY22_19430 PF00166 Chaperonin 10 Kd subunit LJY22_19435 PF00581 Rhodanese-like domain LJY22_19450 PF01070 FMN-dependent dehydrogenase LJY22_19470 PF00669 Bacterial flagellin N-terminal helical region LJY22_19475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJY22_19475 PF00460 Flagella basal body rod protein LJY22_19480 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LJY22_19480 PF10135 Rod binding protein LJY22_19485 PF02119 Flagellar P-ring protein LJY22_19490 PF02107 Flagellar L-ring protein LJY22_19495 PF00460 Flagella basal body rod protein LJY22_19495 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJY22_19500 PF00460 Flagella basal body rod protein LJY22_19500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJY22_19505 PF07559 Flagellar basal body protein FlaE LJY22_19505 PF00460 Flagella basal body rod protein LJY22_19505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJY22_19510 PF13861 FlgD Tudor-like domain LJY22_19510 PF03963 Flagellar hook capping protein - N-terminal region LJY22_19510 PF13860 FlgD Ig-like domain LJY22_19515 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJY22_19515 PF00460 Flagella basal body rod protein LJY22_19520 PF00460 Flagella basal body rod protein LJY22_19540 PF01464 Transglycosylase SLT domain LJY22_19545 PF08264 Anticodon-binding domain of tRNA LJY22_19545 PF00133 tRNA synthetases class I (I, L, M and V) LJY22_19565 PF03313 Serine dehydratase alpha chain LJY22_19565 PF03315 Serine dehydratase beta chain LJY22_19570 PF00854 POT family LJY22_19580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_19580 PF03466 LysR substrate binding domain LJY22_19590 PF03466 LysR substrate binding domain LJY22_19590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_19595 PF01389 OmpA-like transmembrane domain LJY22_19595 PF00691 OmpA family LJY22_19600 PF18027 Cytosolic carboxypeptidase N-terminal domain LJY22_19600 PF00246 Zinc carboxypeptidase LJY22_19605 PF01266 FAD dependent oxidoreductase LJY22_19615 PF04393 Protein of unknown function (DUF535) LJY22_19630 PF07702 UTRA domain LJY22_19630 PF00392 Bacterial regulatory proteins, gntR family LJY22_19635 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_19640 PF00005 ABC transporter LJY22_19650 PF00266 Aminotransferase class-V LJY22_19655 PF00202 Aminotransferase class-III LJY22_19660 PF13419 Haloacid dehalogenase-like hydrolase LJY22_19665 PF00356 Bacterial regulatory proteins, lacI family LJY22_19670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LJY22_19680 PF03611 PTS system sugar-specific permease component LJY22_19690 PF05922 Peptidase inhibitor I9 LJY22_19690 PF00082 Subtilase family LJY22_19695 PF00657 GDSL-like Lipase/Acylhydrolase LJY22_19700 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LJY22_19705 PF00194 Eukaryotic-type carbonic anhydrase LJY22_19710 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LJY22_19725 PF13419 Haloacid dehalogenase-like hydrolase LJY22_19730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_19730 PF03466 LysR substrate binding domain LJY22_19760 PF12464 Maltose acetyltransferase LJY22_19760 PF14602 Hexapeptide repeat of succinyl-transferase LJY22_19765 PF02566 OsmC-like protein LJY22_19770 PF01625 Peptide methionine sulfoxide reductase LJY22_19770 PF01641 SelR domain LJY22_19785 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LJY22_19790 PF00875 DNA photolyase LJY22_19790 PF03441 FAD binding domain of DNA photolyase LJY22_19795 PF00990 Diguanylate cyclase, GGDEF domain LJY22_19810 PF00990 Diguanylate cyclase, GGDEF domain LJY22_19810 PF05230 MASE2 domain LJY22_19825 PF01773 Na+ dependent nucleoside transporter N-terminus LJY22_19825 PF07662 Na+ dependent nucleoside transporter C-terminus LJY22_19825 PF07670 Nucleoside recognition LJY22_19845 PF01212 Beta-eliminating lyase LJY22_19850 PF03116 NQR2, RnfD, RnfE family LJY22_19855 PF01654 Cytochrome bd terminal oxidase subunit I LJY22_19860 PF02322 Cytochrome bd terminal oxidase subunit II LJY22_19875 PF01266 FAD dependent oxidoreductase LJY22_19890 PF05525 Branched-chain amino acid transport protein LJY22_19895 PF00990 Diguanylate cyclase, GGDEF domain LJY22_19900 PF02954 Bacterial regulatory protein, Fis family LJY22_19900 PF00072 Response regulator receiver domain LJY22_19900 PF00158 Sigma-54 interaction domain LJY22_19905 PF00512 His Kinase A (phospho-acceptor) domain LJY22_19905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_19915 PF00232 Glycosyl hydrolase family 1 LJY22_19940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_19940 PF03466 LysR substrate binding domain LJY22_19945 PF08443 RimK-like ATP-grasp domain LJY22_19945 PF18030 RimK PreATP-grasp domain LJY22_19950 PF08443 RimK-like ATP-grasp domain LJY22_19950 PF18030 RimK PreATP-grasp domain LJY22_19955 PF00753 Metallo-beta-lactamase superfamily LJY22_19960 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LJY22_19960 PF17810 Arginine decarboxylase helical bundle domain LJY22_19960 PF17944 Arginine decarboxylase C-terminal helical extension LJY22_19965 PF00491 Arginase family LJY22_19970 PF07690 Major Facilitator Superfamily LJY22_19975 PF00326 Prolyl oligopeptidase family LJY22_19975 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LJY22_19990 PF00950 ABC 3 transport family LJY22_19995 PF00005 ABC transporter LJY22_20000 PF01297 Zinc-uptake complex component A periplasmic LJY22_20045 PF02472 Biopolymer transport protein ExbD/TolR LJY22_20050 PF01618 MotA/TolQ/ExbB proton channel family LJY22_20055 PF01618 MotA/TolQ/ExbB proton channel family LJY22_20065 PF00593 TonB dependent receptor LJY22_20065 PF07715 TonB-dependent Receptor Plug Domain LJY22_20070 PF00512 His Kinase A (phospho-acceptor) domain LJY22_20070 PF16750 Sensor domain of 2-component histidine kinase LJY22_20070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_20070 PF00672 HAMP domain LJY22_20075 PF00486 Transcriptional regulatory protein, C terminal LJY22_20075 PF00072 Response regulator receiver domain LJY22_20080 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LJY22_20080 PF00056 lactate/malate dehydrogenase, NAD binding domain LJY22_20085 PF03009 Glycerophosphoryl diester phosphodiesterase family LJY22_20095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LJY22_20095 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LJY22_20100 PF10928 Protein of unknown function (DUF2810) LJY22_20155 PF04013 Putative SAM-dependent RNA methyltransferase LJY22_20160 PF01523 Putative modulator of DNA gyrase LJY22_20165 PF01523 Putative modulator of DNA gyrase LJY22_20170 PF08543 Phosphomethylpyrimidine kinase LJY22_20175 PF00005 ABC transporter LJY22_20180 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_20185 PF09084 NMT1/THI5 like LJY22_20190 PF03070 TENA/THI-4/PQQC family LJY22_20195 PF02110 Hydroxyethylthiazole kinase family LJY22_20200 PF02581 Thiamine monophosphate synthase LJY22_20210 PF18364 Molybdopterin oxidoreductase N-terminal domain LJY22_20210 PF01568 Molydopterin dinucleotide binding domain LJY22_20210 PF00384 Molybdopterin oxidoreductase LJY22_20215 PF03264 NapC/NirT cytochrome c family, N-terminal region LJY22_20220 PF13302 Acetyltransferase (GNAT) domain LJY22_20240 PF00583 Acetyltransferase (GNAT) family LJY22_20260 PF00392 Bacterial regulatory proteins, gntR family LJY22_20260 PF00155 Aminotransferase class I and II LJY22_20265 PF02595 Glycerate kinase family LJY22_20270 PF02447 GntP family permease LJY22_20275 PF05651 Putative sugar diacid recognition LJY22_20275 PF17853 GGDEF-like domain LJY22_20275 PF13556 PucR C-terminal helix-turn-helix domain LJY22_20300 PF13419 Haloacid dehalogenase-like hydrolase LJY22_20315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_20315 PF03466 LysR substrate binding domain LJY22_20320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_20320 PF03466 LysR substrate binding domain LJY22_20325 PF00884 Sulfatase LJY22_20330 PF04055 Radical SAM superfamily LJY22_20330 PF13186 Iron-sulfur cluster-binding domain LJY22_20335 PF03466 LysR substrate binding domain LJY22_20335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_20345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_20345 PF03466 LysR substrate binding domain LJY22_20350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJY22_20355 PF01661 Macro domain LJY22_20360 PF01204 Trehalase LJY22_20370 PF12706 Beta-lactamase superfamily domain LJY22_20380 PF07690 Major Facilitator Superfamily LJY22_20385 PF13533 Biotin-lipoyl like LJY22_20390 PF03922 OmpW family LJY22_20395 PF13599 Pentapeptide repeats (9 copies) LJY22_20410 PF18416 N-acetylglucosamine binding protein domain 2 LJY22_20410 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LJY22_20415 PF01037 Lrp/AsnC ligand binding domain LJY22_20420 PF01810 LysE type translocator LJY22_20425 PF00326 Prolyl oligopeptidase family LJY22_20430 PF08021 Siderophore-interacting FAD-binding domain LJY22_20430 PF04954 Siderophore-interacting protein LJY22_20435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_20435 PF03466 LysR substrate binding domain LJY22_20440 PF00797 N-acetyltransferase LJY22_20445 PF08240 Alcohol dehydrogenase GroES-like domain LJY22_20445 PF00107 Zinc-binding dehydrogenase LJY22_20450 PF00756 Putative esterase LJY22_20460 PF00990 Diguanylate cyclase, GGDEF domain LJY22_20460 PF17152 Periplasmic sensor domain LJY22_20475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_20475 PF03466 LysR substrate binding domain LJY22_20490 PF00849 RNA pseudouridylate synthase LJY22_20495 PF01554 MatE LJY22_20500 PF03707 Bacterial signalling protein N terminal repeat LJY22_20500 PF00990 Diguanylate cyclase, GGDEF domain LJY22_20500 PF00563 EAL domain LJY22_20510 PF06865 Pyrimidine/purine nucleoside phosphorylase LJY22_20520 PF00704 Glycosyl hydrolases family 18 LJY22_20520 PF08329 Chitinase A, N-terminal domain LJY22_20525 PF12697 Alpha/beta hydrolase family LJY22_20540 PF03600 Citrate transporter LJY22_20550 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LJY22_20560 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LJY22_20560 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LJY22_20565 PF06029 AlkA N-terminal domain LJY22_20565 PF00730 HhH-GPD superfamily base excision DNA repair protein LJY22_20575 PF07681 DoxX LJY22_20580 PF02678 Pirin LJY22_20580 PF17954 Quercetinase C-terminal cupin domain LJY22_20585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_20585 PF03466 LysR substrate binding domain LJY22_20600 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LJY22_20610 PF03616 Sodium/glutamate symporter LJY22_20615 PF00155 Aminotransferase class I and II LJY22_20615 PF00392 Bacterial regulatory proteins, gntR family LJY22_20620 PF00005 ABC transporter LJY22_20630 PF03616 Sodium/glutamate symporter LJY22_20645 PF00672 HAMP domain LJY22_20645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_20645 PF17200 Single Cache domain 2 LJY22_20650 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LJY22_20660 PF04397 LytTr DNA-binding domain LJY22_20660 PF00072 Response regulator receiver domain LJY22_20665 PF07694 5TMR of 5TMR-LYT LJY22_20665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_20665 PF06580 Histidine kinase LJY22_20665 PF13492 GAF domain LJY22_20685 PF00005 ABC transporter LJY22_20695 PF01098 Cell cycle protein LJY22_20700 PF01709 Transcriptional regulator LJY22_20710 PF00512 His Kinase A (phospho-acceptor) domain LJY22_20710 PF17149 Periplasmic sensor domain found in signal transduction proteins LJY22_20710 PF00072 Response regulator receiver domain LJY22_20710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_20710 PF01627 Hpt domain LJY22_20710 PF00672 HAMP domain LJY22_20720 PF08719 Domain of unknown function (DUF1768) LJY22_20720 PF00925 GTP cyclohydrolase II LJY22_20730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJY22_20730 PF00005 ABC transporter LJY22_20735 PF00005 ABC transporter LJY22_20735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJY22_20750 PF13614 AAA domain LJY22_20750 PF18607 ParA helix turn helix domain LJY22_20755 PF08775 ParB family LJY22_20755 PF02195 ParB-like nuclease domain LJY22_20760 PF05127 Helicase LJY22_20760 PF13718 GNAT acetyltransferase 2 LJY22_20770 PF00132 Bacterial transferase hexapeptide (six repeats) LJY22_20775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_20775 PF03466 LysR substrate binding domain LJY22_20785 PF00267 Gram-negative porin LJY22_20790 PF00367 phosphotransferase system, EIIB LJY22_20790 PF02378 Phosphotransferase system, EIIC LJY22_20795 PF01380 SIS domain LJY22_20800 PF01418 Helix-turn-helix domain, rpiR family LJY22_20800 PF01380 SIS domain LJY22_20805 PF00246 Zinc carboxypeptidase LJY22_20810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJY22_20815 PF03358 NADPH-dependent FMN reductase LJY22_20830 PF00664 ABC transporter transmembrane region LJY22_20830 PF00005 ABC transporter LJY22_20830 PF03412 Peptidase C39 family LJY22_20845 PF00529 HlyD membrane-fusion protein of T1SS LJY22_20850 PF02954 Bacterial regulatory protein, Fis family LJY22_20850 PF00072 Response regulator receiver domain LJY22_20850 PF00158 Sigma-54 interaction domain LJY22_20855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_20855 PF02743 Cache domain LJY22_20855 PF00512 His Kinase A (phospho-acceptor) domain LJY22_20860 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LJY22_20860 PF01243 Pyridoxamine 5'-phosphate oxidase LJY22_20870 PF12833 Helix-turn-helix domain LJY22_20875 PF00171 Aldehyde dehydrogenase family LJY22_20875 PF01619 Proline dehydrogenase LJY22_20875 PF14850 DNA-binding domain of Proline dehydrogenase LJY22_20875 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LJY22_20885 PF00474 Sodium:solute symporter family LJY22_20900 PF13302 Acetyltransferase (GNAT) domain LJY22_20910 PF01037 Lrp/AsnC ligand binding domain LJY22_20920 PF00664 ABC transporter transmembrane region LJY22_20920 PF00005 ABC transporter LJY22_20930 PF12833 Helix-turn-helix domain LJY22_20930 PF06719 AraC-type transcriptional regulator N-terminus LJY22_20955 PF03475 3-alpha domain LJY22_20955 PF03473 MOSC domain LJY22_20975 PF04542 Sigma-70 region 2 LJY22_20975 PF08281 Sigma-70, region 4 LJY22_20980 PF12833 Helix-turn-helix domain LJY22_20980 PF01965 DJ-1/PfpI family LJY22_20985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_20985 PF03466 LysR substrate binding domain LJY22_21000 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_21000 PF13192 Thioredoxin domain LJY22_21005 PF10417 C-terminal domain of 1-Cys peroxiredoxin LJY22_21005 PF00578 AhpC/TSA family LJY22_21010 PF01047 MarR family LJY22_21015 PF02566 OsmC-like protein LJY22_21030 PF02687 FtsX-like permease family LJY22_21030 PF12704 MacB-like periplasmic core domain LJY22_21035 PF00005 ABC transporter LJY22_21045 PF02311 AraC-like ligand binding domain LJY22_21045 PF12833 Helix-turn-helix domain LJY22_21055 PF02610 L-arabinose isomerase LJY22_21055 PF11762 L-arabinose isomerase C-terminal domain LJY22_21060 PF00596 Class II Aldolase and Adducin N-terminal domain LJY22_21065 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LJY22_21065 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LJY22_21070 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LJY22_21075 PF00005 ABC transporter LJY22_21080 PF02653 Branched-chain amino acid transport system / permease component LJY22_21085 PF01136 Peptidase family U32 LJY22_21095 PF02378 Phosphotransferase system, EIIC LJY22_21095 PF00367 phosphotransferase system, EIIB LJY22_21100 PF00072 Response regulator receiver domain LJY22_21100 PF00486 Transcriptional regulatory protein, C terminal LJY22_21105 PF08521 Two-component sensor kinase N-terminal LJY22_21105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_21105 PF00512 His Kinase A (phospho-acceptor) domain LJY22_21110 PF01547 Bacterial extracellular solute-binding protein LJY22_21115 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LJY22_21115 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LJY22_21120 PF06276 Ferric iron reductase FhuF-like transporter LJY22_21120 PF04183 IucA / IucC family LJY22_21130 PF06276 Ferric iron reductase FhuF-like transporter LJY22_21130 PF04183 IucA / IucC family LJY22_21135 PF00206 Lyase LJY22_21135 PF02655 ATP-grasp domain LJY22_21140 PF00593 TonB dependent receptor LJY22_21140 PF07715 TonB-dependent Receptor Plug Domain LJY22_21145 PF07715 TonB-dependent Receptor Plug Domain LJY22_21145 PF07660 Secretin and TonB N terminus short domain LJY22_21145 PF00593 TonB dependent receptor LJY22_21150 PF01497 Periplasmic binding protein LJY22_21155 PF01032 FecCD transport family LJY22_21160 PF01032 FecCD transport family LJY22_21165 PF00005 ABC transporter LJY22_21170 PF00672 HAMP domain LJY22_21170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_21170 PF17200 Single Cache domain 2 LJY22_21175 PF00675 Insulinase (Peptidase family M16) LJY22_21175 PF05193 Peptidase M16 inactive domain LJY22_21185 PF04225 Opacity-associated protein A LysM-like domain LJY22_21185 PF01551 Peptidase family M23 LJY22_21220 PF00128 Alpha amylase, catalytic domain LJY22_21220 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LJY22_21225 PF02264 LamB porin LJY22_21240 PF00128 Alpha amylase, catalytic domain LJY22_21240 PF02903 Alpha amylase, N-terminal ig-like domain LJY22_21240 PF16657 Maltogenic Amylase, C-terminal domain LJY22_21245 PF04231 Endonuclease I LJY22_21250 PF11852 Domain of unknown function (DUF3372) LJY22_21250 PF17967 Pullulanase N2 domain LJY22_21250 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LJY22_21250 PF03714 Bacterial pullanase-associated domain LJY22_21250 PF18494 Pullulanase Ins domain LJY22_21265 PF01276 Orn/Lys/Arg decarboxylase, major domain LJY22_21265 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LJY22_21265 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LJY22_21270 PF13520 Amino acid permease LJY22_21280 PF08543 Phosphomethylpyrimidine kinase LJY22_21285 PF00375 Sodium:dicarboxylate symporter family LJY22_21290 PF03193 RsgA GTPase LJY22_21295 PF00367 phosphotransferase system, EIIB LJY22_21295 PF02378 Phosphotransferase system, EIIC LJY22_21300 PF02630 SCO1/SenC LJY22_21315 PF17874 MalT-like TPR region LJY22_21315 PF00196 Bacterial regulatory proteins, luxR family LJY22_21320 PF00343 Carbohydrate phosphorylase LJY22_21325 PF02446 4-alpha-glucanotransferase LJY22_21330 PF02806 Alpha amylase, C-terminal all-beta domain LJY22_21330 PF00128 Alpha amylase, catalytic domain LJY22_21330 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LJY22_21335 PF00912 Transglycosylase LJY22_21340 PF00128 Alpha amylase, catalytic domain LJY22_21355 PF07670 Nucleoside recognition LJY22_21360 PF07670 Nucleoside recognition LJY22_21365 PF07687 Peptidase dimerisation domain LJY22_21365 PF01546 Peptidase family M20/M25/M40 LJY22_21370 PF06803 Protein of unknown function (DUF1232) LJY22_21395 PF00375 Sodium:dicarboxylate symporter family LJY22_21405 PF13614 AAA domain LJY22_21405 PF13807 G-rich domain on putative tyrosine kinase LJY22_21405 PF02706 Chain length determinant protein LJY22_21410 PF01451 Low molecular weight phosphotyrosine protein phosphatase LJY22_21415 PF10531 SLBB domain LJY22_21415 PF02563 Polysaccharide biosynthesis/export protein LJY22_21415 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LJY22_21425 PF00881 Nitroreductase family LJY22_21430 PF01914 MarC family integral membrane protein LJY22_21435 PF01734 Patatin-like phospholipase LJY22_21440 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LJY22_21440 PF18416 N-acetylglucosamine binding protein domain 2 LJY22_21445 PF02469 Fasciclin domain LJY22_21450 PF03441 FAD binding domain of DNA photolyase LJY22_21450 PF00875 DNA photolyase LJY22_21460 PF00581 Rhodanese-like domain LJY22_21460 PF17773 UPF0176 acylphosphatase like domain LJY22_21470 PF00561 alpha/beta hydrolase fold LJY22_21475 PF07943 Penicillin-binding protein 5, C-terminal domain LJY22_21475 PF00768 D-alanyl-D-alanine carboxypeptidase LJY22_21480 PF00128 Alpha amylase, catalytic domain LJY22_21480 PF00686 Starch binding domain LJY22_21485 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LJY22_21485 PF12833 Helix-turn-helix domain LJY22_21500 PF03466 LysR substrate binding domain LJY22_21500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_21505 PF09905 DNA-binding protein VF530 LJY22_21515 PF00175 Oxidoreductase NAD-binding domain LJY22_21515 PF00970 Oxidoreductase FAD-binding domain LJY22_21520 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LJY22_21525 PF01594 AI-2E family transporter LJY22_21535 PF13533 Biotin-lipoyl like LJY22_21555 PF00892 EamA-like transporter family LJY22_21560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_21560 PF03466 LysR substrate binding domain LJY22_21565 PF07690 Major Facilitator Superfamily LJY22_21580 PF00583 Acetyltransferase (GNAT) family LJY22_21590 PF00923 Transaldolase/Fructose-6-phosphate aldolase LJY22_21595 PF04055 Radical SAM superfamily LJY22_21600 PF01228 Glycine radical LJY22_21600 PF02901 Pyruvate formate lyase-like LJY22_21635 PF08000 Bacterial PH domain LJY22_21650 PF13677 Membrane MotB of proton-channel complex MotA/MotB LJY22_21650 PF00691 OmpA family LJY22_21655 PF01618 MotA/TolQ/ExbB proton channel family LJY22_21660 PF04542 Sigma-70 region 2 LJY22_21660 PF04545 Sigma-70, region 4 LJY22_21665 PF03748 Flagellar basal body-associated protein FliL LJY22_21680 PF02561 Flagellar protein FliS LJY22_21685 PF07195 Flagellar hook-associated protein 2 C-terminus LJY22_21685 PF02465 Flagellar hook-associated protein 2 N-terminus LJY22_21685 PF07196 Flagellin hook IN motif LJY22_21700 PF00700 Bacterial flagellin C-terminal helical region LJY22_21700 PF00669 Bacterial flagellin N-terminal helical region LJY22_21710 PF00771 FHIPEP family LJY22_21715 PF01312 FlhB HrpN YscU SpaS Family LJY22_21720 PF01311 Bacterial export proteins, family 1 LJY22_21725 PF01313 Bacterial export proteins, family 3 LJY22_21730 PF00813 FliP family LJY22_21735 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LJY22_21750 PF02954 Bacterial regulatory protein, Fis family LJY22_21750 PF00072 Response regulator receiver domain LJY22_21750 PF00158 Sigma-54 interaction domain LJY22_21755 PF02049 Flagellar hook-basal body complex protein FliE LJY22_21760 PF01514 Secretory protein of YscJ/FliF family LJY22_21760 PF08345 Flagellar M-ring protein C-terminal LJY22_21765 PF14841 FliG middle domain LJY22_21765 PF14842 FliG N-terminal domain LJY22_21765 PF01706 FliG C-terminal domain LJY22_21775 PF18269 T3SS EscN ATPase C-terminal domain LJY22_21775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LJY22_21790 PF03466 LysR substrate binding domain LJY22_21790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_21820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJY22_21825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_21825 PF03466 LysR substrate binding domain LJY22_21845 PF00072 Response regulator receiver domain LJY22_21845 PF00486 Transcriptional regulatory protein, C terminal LJY22_21850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_21850 PF00512 His Kinase A (phospho-acceptor) domain LJY22_21855 PF00080 Copper/zinc superoxide dismutase (SODC) LJY22_21865 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJY22_21870 PF03707 Bacterial signalling protein N terminal repeat LJY22_21870 PF00563 EAL domain LJY22_21870 PF00990 Diguanylate cyclase, GGDEF domain LJY22_21870 PF13188 PAS domain LJY22_21875 PF00155 Aminotransferase class I and II LJY22_21880 PF08240 Alcohol dehydrogenase GroES-like domain LJY22_21880 PF00107 Zinc-binding dehydrogenase LJY22_21910 PF00194 Eukaryotic-type carbonic anhydrase LJY22_21915 PF00924 Mechanosensitive ion channel LJY22_21925 PF01070 FMN-dependent dehydrogenase LJY22_21930 PF02652 L-lactate permease LJY22_21935 PF03466 LysR substrate binding domain LJY22_21935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_21940 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LJY22_21940 PF00326 Prolyl oligopeptidase family LJY22_21945 PF00005 ABC transporter LJY22_21945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJY22_21955 PF05362 Lon protease (S16) C-terminal proteolytic domain LJY22_21955 PF13654 AAA domain LJY22_21960 PF00672 HAMP domain LJY22_21960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_21960 PF17200 Single Cache domain 2 LJY22_21965 PF13609 Gram-negative porin LJY22_21970 PF07238 PilZ domain LJY22_21970 PF12945 Flagellar protein YcgR LJY22_21985 PF00583 Acetyltransferase (GNAT) family LJY22_21990 PF12800 4Fe-4S binding domain LJY22_21990 PF12838 4Fe-4S dicluster domain LJY22_21995 PF13237 4Fe-4S dicluster domain LJY22_21995 PF12801 4Fe-4S binding domain LJY22_22015 PF00005 ABC transporter LJY22_22015 PF12558 ATP-binding cassette cobalt transporter LJY22_22020 PF07155 ECF-type riboflavin transporter, S component LJY22_22025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJY22_22025 PF00529 HlyD membrane-fusion protein of T1SS LJY22_22030 PF11742 Protein of unknown function (DUF3302) LJY22_22035 PF00990 Diguanylate cyclase, GGDEF domain LJY22_22050 PF01048 Phosphorylase superfamily LJY22_22055 PF08349 Protein of unknown function (DUF1722) LJY22_22060 PF13411 MerR HTH family regulatory protein LJY22_22065 PF00875 DNA photolyase LJY22_22065 PF03441 FAD binding domain of DNA photolyase LJY22_22070 PF17969 L,D-transpeptidase C-terminal domain LJY22_22070 PF01476 LysM domain LJY22_22070 PF03734 L,D-transpeptidase catalytic domain LJY22_22080 PF00271 Helicase conserved C-terminal domain LJY22_22080 PF00270 DEAD/DEAH box helicase LJY22_22085 PF00326 Prolyl oligopeptidase family LJY22_22085 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LJY22_22090 PF00593 TonB dependent receptor LJY22_22090 PF07715 TonB-dependent Receptor Plug Domain LJY22_22110 PF17200 Single Cache domain 2 LJY22_22110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_22110 PF00672 HAMP domain LJY22_22115 PF12849 PBP superfamily domain LJY22_22120 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_22125 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_22130 PF00005 ABC transporter LJY22_22145 PF13519 von Willebrand factor type A domain LJY22_22150 PF13519 von Willebrand factor type A domain LJY22_22160 PF01882 Protein of unknown function DUF58 LJY22_22165 PF17863 AAA lid domain LJY22_22165 PF07726 ATPase family associated with various cellular activities (AAA) LJY22_22170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_22170 PF00672 HAMP domain LJY22_22170 PF02743 Cache domain LJY22_22180 PF00196 Bacterial regulatory proteins, luxR family LJY22_22185 PF00196 Bacterial regulatory proteins, luxR family LJY22_22195 PF00005 ABC transporter LJY22_22195 PF00664 ABC transporter transmembrane region LJY22_22200 PF00529 HlyD membrane-fusion protein of T1SS LJY22_22210 PF01032 FecCD transport family LJY22_22215 PF01497 Periplasmic binding protein LJY22_22220 PF00005 ABC transporter LJY22_22225 PF00593 TonB dependent receptor LJY22_22225 PF07715 TonB-dependent Receptor Plug Domain LJY22_22230 PF00005 ABC transporter LJY22_22230 PF00664 ABC transporter transmembrane region LJY22_22235 PF13493 Domain of unknown function (DUF4118) LJY22_22235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJY22_22235 PF00512 His Kinase A (phospho-acceptor) domain LJY22_22235 PF02702 Osmosensitive K+ channel His kinase sensor domain LJY22_22240 PF00486 Transcriptional regulatory protein, C terminal LJY22_22240 PF00072 Response regulator receiver domain LJY22_22245 PF02254 TrkA-N domain LJY22_22245 PF02080 TrkA-C domain LJY22_22250 PF02386 Cation transport protein LJY22_22255 PF03466 LysR substrate binding domain LJY22_22255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_22260 PF02028 BCCT, betaine/carnitine/choline family transporter LJY22_22265 PF00355 Rieske [2Fe-2S] domain LJY22_22265 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LJY22_22270 PF00171 Aldehyde dehydrogenase family LJY22_22280 PF18113 Rubredoxin binding C-terminal domain LJY22_22280 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_22285 PF01266 FAD dependent oxidoreductase LJY22_22295 PF02378 Phosphotransferase system, EIIC LJY22_22300 PF00127 Copper binding proteins, plastocyanin/azurin family LJY22_22305 PF13419 Haloacid dehalogenase-like hydrolase LJY22_22310 PF00158 Sigma-54 interaction domain LJY22_22310 PF01590 GAF domain LJY22_22315 PF00258 Flavodoxin LJY22_22315 PF00753 Metallo-beta-lactamase superfamily LJY22_22315 PF00301 Rubredoxin LJY22_22320 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJY22_22320 PF18113 Rubredoxin binding C-terminal domain LJY22_22330 PF01238 Phosphomannose isomerase type I LJY22_22335 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LJY22_22335 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LJY22_22340 PF12833 Helix-turn-helix domain LJY22_22350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LJY22_22360 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LJY22_22360 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LJY22_22365 PF00199 Catalase LJY22_22365 PF06628 Catalase-related immune-responsive LJY22_22370 PF13417 Glutathione S-transferase, N-terminal domain LJY22_22375 PF00107 Zinc-binding dehydrogenase LJY22_22375 PF16884 N-terminal domain of oxidoreductase LJY22_22380 PF00440 Bacterial regulatory proteins, tetR family LJY22_22380 PF16925 Tetracyclin repressor-like, C-terminal domain LJY22_22385 PF04266 ASCH domain LJY22_22415 PF00534 Glycosyl transferases group 1 LJY22_22415 PF13439 Glycosyltransferase Family 4 LJY22_22425 PF02706 Chain length determinant protein LJY22_22425 PF13807 G-rich domain on putative tyrosine kinase LJY22_22425 PF13614 AAA domain LJY22_22440 PF02397 Bacterial sugar transferase LJY22_22445 PF08402 TOBE domain LJY22_22445 PF00005 ABC transporter LJY22_22450 PF01547 Bacterial extracellular solute-binding protein LJY22_22455 PF14785 Maltose transport system permease protein MalF P2 domain LJY22_22455 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_22460 PF00528 Binding-protein-dependent transport system inner membrane component LJY22_22490 PF05661 Protein of unknown function (DUF808) LJY22_22495 PF01979 Amidohydrolase family LJY22_22500 PF01679 Proteolipid membrane potential modulator LJY22_22505 PF03473 MOSC domain LJY22_22505 PF03476 MOSC N-terminal beta barrel domain LJY22_22505 PF00111 2Fe-2S iron-sulfur cluster binding domain LJY22_22505 PF00111 2Fe-2S iron-sulfur cluster binding domain LJY22_22505 PF03476 MOSC N-terminal beta barrel domain LJY22_22505 PF03473 MOSC domain LJY22_22510 PF02540 NAD synthase LJY22_22515 PF01467 Cytidylyltransferase-like LJY22_22555 PF00005 ABC transporter LJY22_22560 PF01032 FecCD transport family LJY22_22570 PF02472 Biopolymer transport protein ExbD/TolR LJY22_22575 PF01618 MotA/TolQ/ExbB proton channel family LJY22_22580 PF03544 Gram-negative bacterial TonB protein C-terminal LJY22_22585 PF04055 Radical SAM superfamily LJY22_22590 PF06228 Haem utilisation ChuX/HutX LJY22_22595 PF01243 Pyridoxamine 5'-phosphate oxidase LJY22_22605 PF00072 Response regulator receiver domain LJY22_22605 PF01584 CheW-like domain LJY22_22625 PF02583 Metal-sensitive transcriptional repressor LJY22_22630 PF03824 High-affinity nickel-transport protein LJY22_22640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJY22_22640 PF00672 HAMP domain LJY22_22640 PF02743 Cache domain LJY22_22645 PF03466 LysR substrate binding domain LJY22_22645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_22650 PF17848 Acetyl-coA carboxylase zinc finger domain LJY22_22650 PF01039 Carboxyl transferase domain LJY22_22660 PF04151 Bacterial pre-peptidase C-terminal domain LJY22_22660 PF08453 Peptidase family M9 N-terminal LJY22_22660 PF01752 Collagenase LJY22_22670 PF02627 Carboxymuconolactone decarboxylase family LJY22_22675 PF13411 MerR HTH family regulatory protein LJY22_22680 PF00128 Alpha amylase, catalytic domain LJY22_22695 PF00999 Sodium/hydrogen exchanger family LJY22_22695 PF02254 TrkA-N domain LJY22_22700 PF02525 Flavodoxin-like fold LJY22_22705 PF00582 Universal stress protein family LJY22_22710 PF00005 ABC transporter LJY22_22710 PF16326 ABC transporter C-terminal domain LJY22_22710 PF12848 ABC transporter LJY22_22715 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LJY22_22715 PF00326 Prolyl oligopeptidase family LJY22_22725 PF13533 Biotin-lipoyl like LJY22_22730 PF00873 AcrB/AcrD/AcrF family LJY22_22735 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LJY22_22745 PF13302 Acetyltransferase (GNAT) domain LJY22_22755 PF17151 Periplasmic sensor domain LJY22_22755 PF00990 Diguanylate cyclase, GGDEF domain LJY22_22775 PF00873 AcrB/AcrD/AcrF family LJY22_22825 PF13361 UvrD-like helicase C-terminal domain LJY22_22825 PF00580 UvrD/REP helicase N-terminal domain LJY22_23120 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LJY22_23195 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LJY22_23325 PF13662 Toprim domain LJY22_23325 PF01807 CHC2 zinc finger LJY22_23325 PF08275 DNA primase catalytic core, N-terminal domain LJY22_23440 PF01131 DNA topoisomerase LJY22_23440 PF08272 Topoisomerase I zinc-ribbon-like LJY22_23440 PF01396 Topoisomerase DNA binding C4 zinc finger LJY22_23440 PF01751 Toprim domain LJY22_23495 PF00437 Type II/IV secretion system protein LJY22_23540 PF00437 Type II/IV secretion system protein LJY22_23540 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LJY22_23550 PF00114 Pilin (bacterial filament) LJY22_23550 PF07963 Prokaryotic N-terminal methylation motif LJY22_23640 PF00816 H-NS histone family LJY22_23680 PF00563 EAL domain LJY22_23680 PF00990 Diguanylate cyclase, GGDEF domain LJY22_23680 PF03707 Bacterial signalling protein N terminal repeat LJY22_23860 PF01145 SPFH domain / Band 7 family LJY22_23865 PF01145 SPFH domain / Band 7 family LJY22_23880 PF00817 impB/mucB/samB family LJY22_23880 PF11799 impB/mucB/samB family C-terminal domain LJY22_23880 PF13438 Domain of unknown function (DUF4113) LJY22_23890 PF07669 Eco57I restriction-modification methylase LJY22_23905 PF00360 Phytochrome region LJY22_23905 PF00990 Diguanylate cyclase, GGDEF domain LJY22_23905 PF01590 GAF domain LJY22_23905 PF00563 EAL domain LJY22_24015 PF13662 Toprim domain LJY22_24015 PF08275 DNA primase catalytic core, N-terminal domain LJY22_24015 PF01807 CHC2 zinc finger LJY22_24100 PF00529 HlyD membrane-fusion protein of T1SS LJY22_24100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJY22_24105 PF00873 AcrB/AcrD/AcrF family LJY22_24130 PF00809 Pterin binding enzyme LJY22_24135 PF01636 Phosphotransferase enzyme family LJY22_24140 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase LJY22_24155 PF02909 Tetracyclin repressor-like, C-terminal domain LJY22_24155 PF00440 Bacterial regulatory proteins, tetR family LJY22_24165 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase LJY22_24175 PF03466 LysR substrate binding domain LJY22_24175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJY22_24180 PF07690 Major Facilitator Superfamily LJY22_24190 PF13610 DDE domain LJY22_24205 PF04055 Radical SAM superfamily LJY22_24210 PF13610 DDE domain LJY22_24235 PF06508 Queuosine biosynthesis protein QueC LJY22_24410 PF01555 DNA methylase LJY22_24420 PF14319 Transposase zinc-binding domain LJY22_24420 PF04986 Putative transposase LJY22_24425 PF13495 Phage integrase, N-terminal SAM-like domain LJY22_24425 PF00589 Phage integrase family LJY22_24505 PF00580 UvrD/REP helicase N-terminal domain LJY22_24505 PF13361 UvrD-like helicase C-terminal domain LJY22_24515 PF13342 C-terminal repeat of topoisomerase LJY22_24515 PF01751 Toprim domain LJY22_24515 PF01396 Topoisomerase DNA binding C4 zinc finger LJY22_24515 PF01131 DNA topoisomerase LJY22_24590 PF00154 recA bacterial DNA recombination protein LJY22_24630 PF13614 AAA domain LJY22_24690 PF01051 Initiator Replication protein LJY22_24990 PF00437 Type II/IV secretion system protein LJY22_25015 PF00437 Type II/IV secretion system protein