locus-tag	class	description
LJY22_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LJY22_00010	COG0592	DNA-directed DNA polymerase activity
LJY22_00020	COG0187	DNA topoisomerase II activity
LJY22_00030	COG0071	Belongs to the small heat shock protein (HSP20) family
LJY22_00035	COG3977	Valine--pyruvate aminotransferase
LJY22_00040	COG0366	Alpha amylase catalytic
LJY22_00060	COG2119	membrane
LJY22_00070	COG0425	Belongs to the sulfur carrier protein TusA family
LJY22_00085	COG0604	alcohol dehydrogenase
LJY22_00090	COG0183	Belongs to the thiolase family
LJY22_00100	COG1739	Uncharacterized protein family UPF0029
LJY22_00105	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LJY22_00145	COG0583	DNA-binding transcription factor activity
LJY22_00150	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
LJY22_00155	COG2960	long-chain fatty acid transporting porin activity
LJY22_00160	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LJY22_00165	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJY22_00220	COG4166	transmembrane transport
LJY22_00225	COG0601	transmembrane transport
LJY22_00230	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LJY22_00270	COG1609	Transcriptional regulator
LJY22_00275	COG0583	DNA-binding transcription factor activity
LJY22_00290	COG0129	dihydroxy-acid dehydratase activity
LJY22_00295	COG3265	gluconokinase activity
LJY22_00300	COG2610	gluconate transmembrane transporter activity
LJY22_00305	COG0800	Aldolase
LJY22_00310	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
LJY22_00315	COG0583	DNA-binding transcription factor activity
LJY22_00320	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LJY22_00325	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
LJY22_00335	COG1522	sequence-specific DNA binding
LJY22_00340	COG5002	protein histidine kinase activity
LJY22_00340	COG5001	Diguanylate cyclase
LJY22_00345	COG0742	ribosomal rna small subunit methyltransferase
LJY22_00360	COG0589	response to stress
LJY22_00365	COG1528	Iron-storage protein
LJY22_00375	COG2081	HI0933 family
LJY22_00405	COG1597	lipid kinase activity
LJY22_00435	COG0628	permease
LJY22_00450	COG1322	Protein conserved in bacteria
LJY22_00455	COG2226	methyltransferase
LJY22_00460	COG3165	ubiquinone biosynthetic process from chorismate
LJY22_00465	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LJY22_00475	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LJY22_00480	COG0805	protein transport
LJY22_00485	COG0084	hydrolase, TatD family'
LJY22_00495	COG0456	acetyltransferase
LJY22_00500	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LJY22_00500	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LJY22_00505	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LJY22_00535	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LJY22_00545	COG2204	response regulator
LJY22_00550	COG3852	Histidine kinase
LJY22_00560	COG0174	glutamine synthetase
LJY22_00565	COG1217	gtp-binding protein TYPA
LJY22_00580	COG1295	ribonuclease BN
LJY22_00585	COG1490	D-aminoacyl-tRNA deacylase activity
LJY22_00590	COG0456	acetyltransferase
LJY22_00600	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
LJY22_00605	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
LJY22_00610	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LJY22_00615	COG3031	protein transport across the cell outer membrane
LJY22_00625	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LJY22_00630	COG1459	type II secretion system
LJY22_00635	COG2165	general secretion pathway protein
LJY22_00640	COG2165	general secretion pathway protein
LJY22_00645	COG2165	general secretion pathway protein
LJY22_00650	COG4795	General secretion pathway protein
LJY22_00655	COG3156	type II secretion system protein K
LJY22_00660	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
LJY22_00665	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
LJY22_00675	COG1218	3'(2'),5'-bisphosphate nucleotidase
LJY22_00680	COG0494	nUDIX hydrolase
LJY22_00685	COG0316	Belongs to the HesB IscA family
LJY22_00685	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
LJY22_00690	COG1040	competence protein
LJY22_00695	COG0596	Alpha beta hydrolase
LJY22_00705	COG2183	response to ionizing radiation
LJY22_00715	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LJY22_00735	COG2233	PERMEase
LJY22_00740	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LJY22_00745	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LJY22_00750	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LJY22_00755	COG1758	RNA polymerase activity
LJY22_00760	COG0194	GDP metabolic process
LJY22_00775	COG0848	biopolymer transport protein
LJY22_00780	COG0811	peptide transport
LJY22_00800	COG4174	ABC transporter (Permease)
LJY22_00805	COG4239	(ABC) transporter, permease
LJY22_00810	COG0747	negative chemotaxis
LJY22_00815	COG0444	Belongs to the ABC transporter superfamily
LJY22_00820	COG4608	Belongs to the ABC transporter superfamily
LJY22_00845	COG1757	Na H antiporter
LJY22_00855	COG1561	YicC-like family, N-terminal region
LJY22_00860	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
LJY22_00865	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LJY22_00870	COG1560	Kdo2-lipid A biosynthetic process
LJY22_00875	COG1309	transcriptional regulator
LJY22_00880	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LJY22_00890	COG2003	Belongs to the UPF0758 family
LJY22_00935	COG0463	Glycosyl transferase, family 2
LJY22_00940	COG0859	PFAM glycosyl transferase family 9
LJY22_00945	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LJY22_00950	COG3642	lipopolysaccharide core region biosynthetic process
LJY22_00970	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LJY22_00980	COG1086	Polysaccharide biosynthesis protein
LJY22_00985	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LJY22_00990	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LJY22_00995	COG2089	acid synthase
LJY22_01005	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LJY22_01010	COG1083	cytidylyl-transferase
LJY22_01020	COG1519	Transferase
LJY22_01025	COG0859	PFAM glycosyl transferase family 9
LJY22_01030	COG1560	Kdo2-lipid A biosynthetic process
LJY22_01040	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LJY22_01095	COG1215	transferase activity, transferring glycosyl groups
LJY22_01105	COG0438	transferase activity, transferring glycosyl groups
LJY22_01115	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LJY22_01120	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
LJY22_01125	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LJY22_01145	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LJY22_01150	COG2515	1-aminocyclopropane-1-carboxylate deaminase
LJY22_01165	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LJY22_01190	COG0149	triose-phosphate isomerase activity
LJY22_01220	COG1494	fructose-1,6-bisphosphatase
LJY22_01230	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LJY22_01235	COG1575	Belongs to the MenA family. Type 1 subfamily
LJY22_01240	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
LJY22_01245	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
LJY22_01255	COG1609	Transcriptional regulator
LJY22_01260	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LJY22_01265	COG0254	rRNA binding
LJY22_01275	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LJY22_01280	COG0088	Forms part of the polypeptide exit tunnel
LJY22_01290	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LJY22_01295	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LJY22_01300	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LJY22_01305	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
LJY22_01315	COG0255	Belongs to the universal ribosomal protein uL29 family
LJY22_01320	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LJY22_01330	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
LJY22_01335	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LJY22_01340	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
LJY22_01345	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
LJY22_01350	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
LJY22_01365	COG1841	ribosomal large subunit assembly
LJY22_01370	COG0200	Binds to the 23S rRNA
LJY22_01375	COG0201	protein transport
LJY22_01380	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LJY22_01385	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LJY22_01390	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
LJY22_01400	COG0202	RNA polymerase activity
LJY22_01405	COG0203	ribosomal protein L17
LJY22_01415	COG0545	Peptidyl-prolyl cis-trans isomerase
LJY22_01425	COG2153	protein acetylation
LJY22_01430	COG0513	Belongs to the DEAD box helicase family
LJY22_01445	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LJY22_01445	COG1648	precorrin-2 dehydrogenase activity
LJY22_01450	COG0175	sulfate reduction
LJY22_01455	COG2895	sulfate adenylyltransferase (ATP) activity
LJY22_01460	COG3273	potassium ion transport
LJY22_01460	COG0471	metal ion transport
LJY22_01465	COG0529	Catalyzes the synthesis of activated sulfate
LJY22_01485	COG4181	ATPase activity
LJY22_01500	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
LJY22_01510	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LJY22_01515	COG0729	surface antigen
LJY22_01520	COG2911	Protein conserved in bacteria
LJY22_01525	COG2105	PFAM AIG2 family protein
LJY22_01535	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
LJY22_01540	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
LJY22_01545	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LJY22_01550	COG0163	prenyltransferase activity
LJY22_01555	COG4143	(ABC) transporter
LJY22_01560	COG1178	ABC-type Fe3 transport system permease component
LJY22_01565	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
LJY22_01570	COG0583	DNA-binding transcription factor activity
LJY22_01575	COG1902	pentaerythritol trinitrate reductase activity
LJY22_01590	COG2358	TRAP transporter, solute receptor (TAXI family
LJY22_01610	COG0142	geranyltranstransferase activity
LJY22_01615	COG0261	This protein binds to 23S rRNA in the presence of protein L20
LJY22_01625	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LJY22_01630	COG2966	Psort location CytoplasmicMembrane, score
LJY22_01645	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LJY22_01650	COG2967	ApaG domain
LJY22_01655	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LJY22_01660	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LJY22_01665	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LJY22_01670	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
LJY22_01675	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
LJY22_01695	COG0473	3-isopropylmalate dehydrogenase activity
LJY22_01700	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LJY22_01720	COG0583	DNA-binding transcription factor activity
LJY22_01725	COG1022	Amp-dependent synthetase and ligase
LJY22_01730	COG0028	Belongs to the TPP enzyme family
LJY22_01750	COG0469	pyruvate kinase activity
LJY22_01755	COG1349	DNA-binding transcription factor activity
LJY22_01760	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LJY22_01775	COG5002	protein histidine kinase activity
LJY22_01785	COG2376	Dihydroxyacetone kinase
LJY22_01790	COG1461	Dihydroxyacetone kinase
LJY22_01805	COG3722	fumarate hydratase activity
LJY22_01815	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJY22_01815	COG2213	PTS system mannitol-specific
LJY22_01845	COG1464	Belongs to the NlpA lipoprotein family
LJY22_01855	COG3339	Conserved Protein
LJY22_01930	COG0358	DNA primase activity
LJY22_01935	COG1610	YqeY-like protein
LJY22_01940	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LJY22_01945	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LJY22_01950	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LJY22_01955	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LJY22_01960	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LJY22_01965	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LJY22_01970	COG1968	undecaprenyl-diphosphatase activity
LJY22_01980	COG3409	Peptidoglycan-binding domain 1 protein
LJY22_01980	COG3267	Type II secretory pathway component ExeA
LJY22_01990	COG0405	Gamma-glutamyltransferase
LJY22_01995	COG4991	sh3 domain protein
LJY22_02000	COG0306	phosphate transporter
LJY22_02005	COG1392	Phosphate transport regulator
LJY22_02010	COG3025	triphosphatase activity
LJY22_02025	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
LJY22_02030	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LJY22_02030	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
LJY22_02035	COG1538	Outer membrane efflux protein
LJY22_02040	COG0494	nUDIX hydrolase
LJY22_02045	COG3151	Protein conserved in bacteria
LJY22_02055	COG3150	esterase
LJY22_02065	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LJY22_02070	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LJY22_02080	COG3105	Protein conserved in bacteria
LJY22_02085	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
LJY22_02090	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LJY22_02095	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LJY22_02100	COG0723	plastoquinol--plastocyanin reductase activity
LJY22_02105	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
LJY22_02110	COG2857	Cytochrome c1
LJY22_02115	COG0625	glutathione transferase activity
LJY22_02120	COG2969	positive regulation of protein catabolic process
LJY22_02125	COG2823	Periplasmic or secreted lipoprotein
LJY22_02130	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LJY22_02145	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LJY22_02160	COG3116	cell division
LJY22_02165	COG0768	penicillin binding
LJY22_02170	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LJY22_02175	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LJY22_02180	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LJY22_02185	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
LJY22_02190	COG0772	Belongs to the SEDS family
LJY22_02200	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LJY22_02205	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LJY22_02210	COG0849	cell division
LJY22_02215	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LJY22_02220	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
LJY22_02230	COG0653	protein targeting
LJY22_02235	COG0494	nUDIX hydrolase
LJY22_02250	COG0505	Belongs to the CarA family
LJY22_02255	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LJY22_02260	COG0730	response to heat
LJY22_02265	COG0583	DNA-binding transcription factor activity
LJY22_02270	COG2860	membrane
LJY22_02285	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LJY22_02295	COG0493	'glutamate synthase
LJY22_02300	COG0067	glutamate synthase
LJY22_02300	COG0069	glutamate synthase activity
LJY22_02300	COG0070	glutamate synthase
LJY22_02310	COG0067	glutamate synthase
LJY22_02310	COG0069	glutamate synthase activity
LJY22_02310	COG0070	glutamate synthase
LJY22_02315	COG1242	4 iron, 4 sulfur cluster binding
LJY22_02320	COG2203	Gaf domain
LJY22_02320	COG3706	GGDEF domain
LJY22_02320	COG4251	negative regulation of phosphorylation
LJY22_02320	COG5001	Diguanylate cyclase
LJY22_02325	COG0784	Response regulator, receiver
LJY22_02325	COG2198	Histidine kinase
LJY22_02325	COG5002	protein histidine kinase activity
LJY22_02335	COG0745	RESPONSE REGULATOR receiver
LJY22_02345	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LJY22_02365	COG0083	homoserine kinase activity
LJY22_02370	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
LJY22_02380	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
LJY22_02385	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
LJY22_02390	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
LJY22_02405	COG1115	amino acid carrier protein
LJY22_02410	COG3022	response to hydroperoxide
LJY22_02415	COG0513	Belongs to the DEAD box helicase family
LJY22_02420	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
LJY22_02430	COG0716	FMN binding
LJY22_02435	COG4974	Belongs to the 'phage' integrase family
LJY22_02440	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LJY22_02445	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LJY22_02455	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
LJY22_02460	COG2204	response regulator
LJY22_02470	COG0667	Aldo Keto reductase
LJY22_02495	COG0730	response to heat
LJY22_02500	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LJY22_02505	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
LJY22_02515	COG1283	sodium-dependent phosphate transmembrane transporter activity
LJY22_02520	COG0583	DNA-binding transcription factor activity
LJY22_02525	COG0640	Transcriptional regulator
LJY22_02530	COG0268	Binds directly to 16S ribosomal RNA
LJY22_02535	COG0728	peptidoglycan biosynthetic process
LJY22_02540	COG0196	riboflavin kinase activity
LJY22_02550	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LJY22_02555	COG1047	Peptidyl-prolyl cis-trans
LJY22_02560	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LJY22_02570	COG3279	Response regulator of the LytR AlgR family
LJY22_02575	COG3275	phosphorelay sensor kinase activity
LJY22_02580	COG1966	Carbon starvation protein
LJY22_02600	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
LJY22_02605	COG1472	Belongs to the glycosyl hydrolase 3 family
LJY22_02610	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LJY22_02615	COG1605	Chorismate mutase
LJY22_02615	COG0287	Prephenate dehydrogenase
LJY22_02620	COG1196	nuclear chromosome segregation
LJY22_02620	COG0741	lytic transglycosylase activity
LJY22_02620	COG0739	heme binding
LJY22_02630	COG0488	(ABC) transporter
LJY22_02640	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
LJY22_02645	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
LJY22_02650	COG0077	Prephenate dehydratase
LJY22_02650	COG1605	Chorismate mutase
LJY22_02655	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LJY22_02660	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LJY22_02665	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LJY22_02670	COG0564	pseudouridine synthase activity
LJY22_02680	COG0542	response to heat
LJY22_02735	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LJY22_02740	COG0826	peptidase U32
LJY22_02745	COG2974	May be involved in recombination
LJY22_02750	COG0745	RESPONSE REGULATOR receiver
LJY22_02755	COG5002	protein histidine kinase activity
LJY22_02765	COG0248	Ppx GppA phosphatase
LJY22_02770	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
LJY22_02775	COG0573	inorganic phosphate transmembrane transporter activity
LJY22_02780	COG0581	inorganic phosphate transmembrane transporter activity
LJY22_02785	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LJY22_02790	COG0704	Plays a role in the regulation of phosphate uptake
LJY22_02800	COG3142	Participates in the control of copper homeostasis
LJY22_02805	COG0450	alkyl hydroperoxide reductase
LJY22_02810	COG0583	DNA-binding transcription factor activity
LJY22_02815	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
LJY22_02825	COG0517	IMP dehydrogenase activity
LJY22_02835	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LJY22_02845	COG1862	Preprotein translocase
LJY22_02850	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LJY22_02855	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LJY22_02860	COG0483	inositol monophosphate 1-phosphatase activity
LJY22_02865	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
LJY22_02875	COG1104	cysteine desulfurase activity
LJY22_02880	COG0822	iron-sulfur transferase activity
LJY22_02895	COG0443	Heat shock 70 kDa protein
LJY22_02900	COG0633	Ferredoxin
LJY22_02905	COG2975	iron-sulfur cluster assembly
LJY22_02915	COG0105	UTP biosynthetic process
LJY22_02930	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
LJY22_02935	COG0124	histidyl-tRNA synthetase
LJY22_02940	COG2976	Protein conserved in bacteria
LJY22_02945	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LJY22_02950	COG1160	GTP binding
LJY22_02970	COG0516	GMP reductase activity
LJY22_02970	COG0517	IMP dehydrogenase activity
LJY22_02975	COG0519	Catalyzes the synthesis of GMP from XMP
LJY22_02975	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LJY22_02980	COG1757	Na H antiporter
LJY22_02990	COG1584	GPR1 FUN34 yaaH family protein
LJY22_02995	COG1115	amino acid carrier protein
LJY22_03015	COG2873	o-acetylhomoserine
LJY22_03020	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LJY22_03040	COG3153	acetyltransferase
LJY22_03040	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LJY22_03045	COG0583	DNA-binding transcription factor activity
LJY22_03085	COG3300	MHYT domain
LJY22_03085	COG5001	Diguanylate cyclase
LJY22_03140	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
LJY22_03180	COG0582	viral genome integration into host DNA
LJY22_03190	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LJY22_03195	COG2867	negative regulation of translational initiation
LJY22_03200	COG2914	Belongs to the UPF0125 (RnfH) family
LJY22_03205	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LJY22_03210	COG0497	DNA recombination
LJY22_03220	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LJY22_03225	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LJY22_03230	COG1301	dicarboxylic acid transport
LJY22_03240	COG0484	heat shock protein binding
LJY22_03250	COG4969	Belongs to the N-Me-Phe pilin family
LJY22_03270	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
LJY22_03280	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LJY22_03285	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LJY22_03285	COG0047	phosphoribosylformylglycinamidine synthase activity
LJY22_03300	COG1629	transport
LJY22_03315	COG2195	Cleaves the N-terminal amino acid of tripeptides
LJY22_03320	COG2252	PERMEase
LJY22_03325	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
LJY22_03330	COG1073	alpha beta
LJY22_03340	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
LJY22_03345	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LJY22_03350	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LJY22_03355	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LJY22_03355	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LJY22_03370	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
LJY22_03380	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
LJY22_03385	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LJY22_03395	COG0142	geranyltranstransferase activity
LJY22_03400	COG1722	exodeoxyribonuclease VII activity
LJY22_03405	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
LJY22_03415	COG0301	tRNA thio-modification
LJY22_03415	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LJY22_03420	COG0583	DNA-binding transcription factor activity
LJY22_03430	COG2363	Small membrane protein
LJY22_03440	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LJY22_03445	COG1611	Belongs to the LOG family
LJY22_03460	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
LJY22_03460	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
LJY22_03470	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
LJY22_03475	COG1464	Belongs to the NlpA lipoprotein family
LJY22_03480	COG2011	ABC-type metal ion transport system permease component
LJY22_03485	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LJY22_03490	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LJY22_03500	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LJY22_03500	COG1263	PTS System
LJY22_03505	COG0366	Alpha amylase catalytic
LJY22_03520	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LJY22_03525	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
LJY22_03530	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LJY22_03535	COG0321	lipoyl(octanoyl) transferase activity
LJY22_03545	COG1686	Belongs to the peptidase S11 family
LJY22_03550	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LJY22_03555	COG0772	Belongs to the SEDS family
LJY22_03560	COG0768	penicillin binding
LJY22_03565	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LJY22_03570	COG0799	negative regulation of ribosome biogenesis
LJY22_03575	COG1466	dna polymerase III delta subunit
LJY22_03580	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
LJY22_03585	COG0495	leucyl-tRNA aminoacylation
LJY22_03590	COG2888	peptidyl-tyrosine sulfation
LJY22_03595	COG0815	Transfers the fatty acyl group on membrane lipoproteins
LJY22_03600	COG4535	Mg2 and Co2 transporter CorC
LJY22_03605	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LJY22_03610	COG1702	phosphate starvation-inducible protein PhoH
LJY22_03615	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LJY22_03620	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LJY22_03725	COG0012	GTP binding
LJY22_03730	COG0193	aminoacyl-tRNA hydrolase activity
LJY22_03735	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LJY22_03745	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
LJY22_03750	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
LJY22_03755	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LJY22_03760	COG2890	protein-(glutamine-N5) methyltransferase activity
LJY22_03765	COG3094	Invasion gene expression up-regulator, SirB
LJY22_03770	COG2912	Transglutaminase-like superfamily
LJY22_03775	COG2877	3-deoxy-8-phosphooctulonate synthase activity
LJY22_03780	COG0737	Belongs to the 5'-nucleotidase family
LJY22_03785	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LJY22_03790	COG1187	pseudouridine synthase activity
LJY22_03795	COG2840	Smr protein MutS2
LJY22_03835	COG2217	Heavy metal translocating P-type atpase
LJY22_03835	COG2608	mercury ion transmembrane transporter activity
LJY22_03845	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
LJY22_03900	COG0784	Response regulator, receiver
LJY22_03900	COG0835	chemotaxis
LJY22_03905	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LJY22_03910	COG1815	bacterial-type flagellum-dependent cell motility
LJY22_03915	COG1558	bacterial-type flagellum-dependent cell motility
LJY22_03925	COG1749	Flagellar hook protein flgE
LJY22_03930	COG4787	bacterial-type flagellum-dependent cell motility
LJY22_03940	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
LJY22_03945	COG1706	bacterial-type flagellum-dependent cell motility
LJY22_03950	COG1705	Flagellar rod assembly protein muramidase FlgJ
LJY22_03950	COG3951	Flagellar rod assembly protein muramidase FlgJ
LJY22_03960	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LJY22_03965	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LJY22_03970	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LJY22_03975	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LJY22_03980	COG2190	(PTS) system
LJY22_03985	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LJY22_03990	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJY22_03995	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LJY22_04000	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
LJY22_04005	COG3115	cell septum assembly
LJY22_04010	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LJY22_04035	COG0330	HflC and HflK could
LJY22_04040	COG3118	belongs to the thioredoxin family
LJY22_04045	COG0300	oxidoreductase activity
LJY22_04050	COG1090	epimerase
LJY22_04080	COG0622	Phosphoesterase
LJY22_04100	COG3710	Transcriptional regulator
LJY22_04105	COG0326	Molecular chaperone. Has ATPase activity
LJY22_04115	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
LJY22_04120	COG3104	oligopeptide transport
LJY22_04125	COG0250	Participates in transcription elongation, termination and antitermination
LJY22_04130	COG0367	asparagine synthase
LJY22_04135	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LJY22_04135	COG4651	solute:proton antiporter activity
LJY22_04140	COG1940	carbohydrate kinase activity
LJY22_04140	COG1846	Transcriptional regulator
LJY22_04145	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LJY22_04150	COG1263	PTS System
LJY22_04150	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LJY22_04150	COG2190	(PTS) system
LJY22_04155	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LJY22_04160	COG0735	belongs to the Fur family
LJY22_04170	COG0716	FMN binding
LJY22_04180	COG0596	Alpha beta hydrolase
LJY22_04185	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
LJY22_04190	COG0033	Phosphoglucomutase
LJY22_04200	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LJY22_04215	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
LJY22_04220	COG1053	succinate dehydrogenase
LJY22_04225	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LJY22_04230	COG0567	Dehydrogenase, E1 component
LJY22_04235	COG0508	dehydrogenase complex catalyzes the overall conversion of
LJY22_04250	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LJY22_04255	COG1121	(ABC) transporter
LJY22_04260	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
LJY22_04265	COG4977	sequence-specific DNA binding
LJY22_04270	COG1918	ferrous iron import across plasma membrane
LJY22_04290	COG0018	arginyl-trna synthetase
LJY22_04295	COG3102	Protein conserved in bacteria
LJY22_04310	COG0788	formyltetrahydrofolate deformylase activity
LJY22_04315	COG1199	ATP-dependent helicase activity
LJY22_04320	COG1214	PFAM Peptidase M22, glycoprotease
LJY22_04330	COG3065	identical protein binding
LJY22_04335	COG2267	carboxylic ester hydrolase activity
LJY22_04340	COG0318	PFAM AMP-dependent synthetase and ligase
LJY22_04345	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
LJY22_04350	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
LJY22_04355	COG2894	cell division
LJY22_04360	COG0850	regulation of cytokinetic process
LJY22_04365	COG3100	YcgL domain-containing protein
LJY22_04370	COG2951	lytic endotransglycosylase activity
LJY22_04380	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LJY22_04385	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LJY22_04405	COG1028	Short-chain dehydrogenase reductase Sdr
LJY22_04415	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LJY22_04440	COG2986	histidine ammonia-lyase
LJY22_04445	COG1216	Glycosyl transferase, family 2
LJY22_04450	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LJY22_04465	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LJY22_04470	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LJY22_04505	COG1253	flavin adenine dinucleotide binding
LJY22_04510	COG0513	Belongs to the DEAD box helicase family
LJY22_04515	COG0569	domain protein
LJY22_04520	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LJY22_04535	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
LJY22_04540	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LJY22_04545	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LJY22_04550	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LJY22_04575	COG0544	peptidyl-prolyl cis-trans isomerase activity
LJY22_04585	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LJY22_04590	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LJY22_04595	COG0776	regulation of translation
LJY22_04600	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LJY22_04605	COG1555	photosystem II stabilization
LJY22_04620	COG0232	Belongs to the dGTPase family. Type 2 subfamily
LJY22_04625	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LJY22_04630	COG0436	Aminotransferase
LJY22_04635	COG1169	isochorismate synthase
LJY22_04640	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
LJY22_04645	COG0596	Alpha beta hydrolase
LJY22_04650	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
LJY22_04670	COG2855	membrane
LJY22_04675	COG0477	Major facilitator Superfamily
LJY22_04720	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJY22_04725	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LJY22_04750	COG1522	sequence-specific DNA binding
LJY22_04760	COG1946	Acyl-CoA thioesterase
LJY22_04765	COG3126	Type III secretion system lipoprotein chaperone (YscW)
LJY22_04815	COG1061	Type III restriction enzyme res subunit
LJY22_04830	COG0732	type I restriction modification DNA specificity domain
LJY22_04890	COG4974	Belongs to the 'phage' integrase family
LJY22_04915	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LJY22_04920	COG0517	IMP dehydrogenase activity
LJY22_04920	COG0516	GMP reductase activity
LJY22_04945	COG0537	adenosine 5'-monophosphoramidase activity
LJY22_04970	COG3150	esterase
LJY22_04975	COG1252	NADH dehydrogenase
LJY22_04990	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LJY22_05000	COG4591	ABC-type transport system involved in lipoprotein release permease component
LJY22_05005	COG1136	(ABC) transporter
LJY22_05010	COG4591	ABC-type transport system involved in lipoprotein release permease component
LJY22_05020	COG0658	competence protein
LJY22_05020	COG2333	competence protein COMEC
LJY22_05025	COG1132	(ABC) transporter
LJY22_05045	COG2719	SpoVR family
LJY22_05050	COG2718	Belongs to the UPF0229 family
LJY22_05055	COG2766	serine protein kinase
LJY22_05060	COG3013	Belongs to the UPF0304 family
LJY22_05070	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LJY22_05080	COG1882	Formate acetyltransferase
LJY22_05120	COG0708	Exodeoxyribonuclease III
LJY22_05130	COG3923	Primosomal replication protein n
LJY22_05135	COG0730	response to heat
LJY22_05140	COG1199	ATP-dependent helicase activity
LJY22_05145	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
LJY22_05150	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
LJY22_05155	COG1187	pseudouridine synthase activity
LJY22_05165	COG1278	Cold shock
LJY22_05170	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
LJY22_05175	COG0542	response to heat
LJY22_05180	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LJY22_05185	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
LJY22_05190	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
LJY22_05210	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LJY22_05215	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LJY22_05220	COG0297	glycogen (starch) synthase activity
LJY22_05240	COG3070	regulator of competence-specific genes
LJY22_05245	COG1609	Transcriptional regulator
LJY22_05250	COG3381	protein complex oligomerization
LJY22_05255	COG0745	RESPONSE REGULATOR receiver
LJY22_05260	COG1434	Gram-negative-bacterium-type cell wall biogenesis
LJY22_05265	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LJY22_05270	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
LJY22_05275	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
LJY22_05280	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
LJY22_05300	COG0189	ligase activity
LJY22_05300	COG4067	protein conserved in archaea
LJY22_05305	COG0500	methyltransferase
LJY22_05315	COG1801	Protein of unknown function DUF72
LJY22_05325	COG0217	transcriptional regulatory protein
LJY22_05330	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
LJY22_05335	COG0632	four-way junction helicase activity
LJY22_05340	COG2255	four-way junction helicase activity
LJY22_05345	COG1271	oxidase subunit
LJY22_05350	COG1294	oxidase, subunit
LJY22_05355	COG4890	Cyd operon protein YbgT
LJY22_05365	COG0824	Thioesterase
LJY22_05370	COG0811	peptide transport
LJY22_05385	COG0823	Involved in the tonB-independent uptake of proteins
LJY22_05390	COG2885	chlorophyll binding
LJY22_05395	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
LJY22_05400	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LJY22_05410	COG3766	membrane
LJY22_05420	COG0754	glutathionylspermidine amidase activity
LJY22_05430	COG0784	Response regulator, receiver
LJY22_05430	COG5002	protein histidine kinase activity
LJY22_05445	COG0840	transmembrane signaling receptor activity
LJY22_05450	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJY22_05455	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LJY22_05480	COG3568	Endonuclease Exonuclease Phosphatase
LJY22_05490	COG0840	transmembrane signaling receptor activity
LJY22_05505	COG0583	DNA-binding transcription factor activity
LJY22_05515	COG0686	Belongs to the AlaDH PNT family
LJY22_05525	COG1674	ftsk spoiiie
LJY22_05530	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LJY22_05535	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LJY22_05540	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LJY22_05570	COG2226	methyltransferase
LJY22_05570	COG1073	alpha beta
LJY22_05575	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
LJY22_05595	COG0300	oxidoreductase activity
LJY22_05610	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LJY22_05620	COG2268	Band 7 protein
LJY22_05630	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LJY22_05635	COG2915	High frequency lysogenization protein hflD homolog
LJY22_05640	COG0482	sulfurtransferase activity
LJY22_05650	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LJY22_05660	COG1757	Na H antiporter
LJY22_05670	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
LJY22_05675	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LJY22_05680	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LJY22_05685	COG0131	Imidazoleglycerol-phosphate dehydratase
LJY22_05685	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LJY22_05690	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LJY22_05695	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LJY22_05705	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LJY22_05705	COG0140	phosphoribosyl-ATP diphosphatase activity
LJY22_05710	COG3012	SEC-C Motif Domain Protein
LJY22_05715	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
LJY22_05720	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LJY22_05725	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LJY22_05730	COG0215	cysteine-tRNA ligase activity
LJY22_05735	COG1435	thymidine kinase activity
LJY22_05740	COG1434	Gram-negative-bacterium-type cell wall biogenesis
LJY22_05765	COG2116	formate transmembrane transporter activity
LJY22_05775	COG0390	transport system, permease component
LJY22_05780	COG4459	periplasmic nitrate reductase
LJY22_05785	COG3005	denitrification pathway
LJY22_05790	COG0243	molybdopterin cofactor binding
LJY22_05805	COG1227	inorganic diphosphatase activity
LJY22_05815	COG4172	Belongs to the ABC transporter superfamily
LJY22_05825	COG4171	peptide transport system, permease
LJY22_05840	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
LJY22_05845	COG1842	Phage shock protein A
LJY22_05855	COG1983	PspC domain protein
LJY22_05875	COG2818	Glycosylase
LJY22_05880	COG5380	lipid catabolic process
LJY22_05885	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
LJY22_05890	COG0626	cystathionine gamma-synthase activity
LJY22_05900	COG0733	neurotransmitter:sodium symporter activity
LJY22_05905	COG0564	pseudouridine synthase activity
LJY22_05915	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LJY22_05920	COG1151	hydroxylamine reductase activity
LJY22_05925	COG3604	Transcriptional regulator
LJY22_05935	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LJY22_05940	COG4136	ATPase activity
LJY22_05945	COG4135	transport system, permease component
LJY22_05950	COG4134	Bacterial extracellular solute-binding protein
LJY22_05960	COG3313	Fe-S protein
LJY22_05980	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
LJY22_06000	COG1061	Type III restriction enzyme res subunit
LJY22_06005	COG1187	pseudouridine synthase activity
LJY22_06010	COG2814	Major facilitator Superfamily
LJY22_06040	COG3005	denitrification pathway
LJY22_06045	COG0702	epimerase
LJY22_06050	COG0534	Mate efflux family protein
LJY22_06070	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LJY22_06080	COG1960	acyl-CoA dehydrogenase activity
LJY22_06085	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LJY22_06090	COG2985	domain, Protein
LJY22_06090	COG3273	potassium ion transport
LJY22_06095	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LJY22_06105	COG1737	Transcriptional regulator
LJY22_06110	COG0076	glutamate decarboxylase activity
LJY22_06120	COG2431	L-lysine efflux transmembrane transporter activity
LJY22_06130	COG3070	regulator of competence-specific genes
LJY22_06145	COG4191	Histidine kinase
LJY22_06145	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJY22_06155	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
LJY22_06165	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
LJY22_06170	COG4988	ABC transporter
LJY22_06175	COG0492	ferredoxin-NADP+ reductase activity
LJY22_06200	COG0471	metal ion transport
LJY22_06205	COG2949	membrane
LJY22_06210	COG0281	malic enzyme
LJY22_06215	COG1643	Atp-dependent helicase
LJY22_06230	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
LJY22_06265	COG0247	lactate metabolic process
LJY22_06265	COG0277	FAD linked oxidase domain protein
LJY22_06280	COG2986	histidine ammonia-lyase
LJY22_06285	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
LJY22_06290	COG0010	Belongs to the arginase family
LJY22_06295	COG1228	amidohydrolase
LJY22_06300	COG2188	Transcriptional regulator
LJY22_06315	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LJY22_06325	COG0291	Belongs to the bacterial ribosomal protein bL35 family
LJY22_06335	COG0393	Putative heavy-metal-binding
LJY22_06365	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
LJY22_06370	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LJY22_06370	COG0072	phenylalanine-tRNA ligase activity
LJY22_06380	COG0776	regulation of translation
LJY22_06390	COG0500	methyltransferase
LJY22_06395	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
LJY22_06400	COG0295	cytidine deaminase activity
LJY22_06405	COG1346	cytolysis
LJY22_06410	COG1380	Effector of murein hydrolase LrgA
LJY22_06415	COG2925	Exonuclease
LJY22_06420	COG1823	symporter activity
LJY22_06430	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
LJY22_06435	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
LJY22_06455	COG2988	succinylglutamate desuccinylase activity
LJY22_06460	COG4139	cobalamin transport
LJY22_06465	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
LJY22_06485	COG0583	DNA-binding transcription factor activity
LJY22_06495	COG1451	nucleotide metabolic process
LJY22_06530	COG3938	Belongs to the proline racemase family
LJY22_06545	COG2423	ornithine cyclodeaminase activity
LJY22_06550	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LJY22_06555	COG3842	ATPase activity
LJY22_06565	COG1177	transmembrane transport
LJY22_06580	COG3291	Pkd domain containing protein
LJY22_06600	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LJY22_06605	COG0601	transmembrane transport
LJY22_06615	COG2195	Cleaves the N-terminal amino acid of tripeptides
LJY22_06625	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
LJY22_06635	COG0625	glutathione transferase activity
LJY22_06670	COG2200	EAL domain
LJY22_06680	COG1846	Transcriptional regulator
LJY22_06685	COG2315	Protein conserved in bacteria
LJY22_06700	COG0110	maltose O-acetyltransferase activity
LJY22_06730	COG3063	Type IV pilus biogenesis stability protein PilW
LJY22_06735	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
LJY22_06750	COG0531	amino acid
LJY22_06755	COG1560	Kdo2-lipid A biosynthetic process
LJY22_06760	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
LJY22_06765	COG1280	lysine exporter protein (LysE YggA)
LJY22_06775	COG1115	amino acid carrier protein
LJY22_06805	COG1368	sulfuric ester hydrolase activity
LJY22_06810	COG0642	Histidine kinase
LJY22_06815	COG0745	RESPONSE REGULATOR receiver
LJY22_06825	COG4221	oxidoreductase activity
LJY22_06835	COG1022	Amp-dependent synthetase and ligase
LJY22_06845	COG2113	Glycine betaine
LJY22_06850	COG4176	ABC-type proline glycine betaine transport system permease component
LJY22_06870	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LJY22_06875	COG0456	acetyltransferase
LJY22_06880	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LJY22_06885	COG0662	Cupin 2, conserved barrel domain protein
LJY22_06890	COG0527	aspartate kinase activity
LJY22_06895	COG3119	arylsulfatase activity
LJY22_06910	COG0641	radical SAM
LJY22_06925	COG1349	DNA-binding transcription factor activity
LJY22_06930	COG0673	inositol 2-dehydrogenase activity
LJY22_06935	COG4702	Belongs to the UPF0303 family
LJY22_06960	COG0471	metal ion transport
LJY22_06965	COG4191	Histidine kinase
LJY22_06975	COG5001	Diguanylate cyclase
LJY22_06975	COG3300	MHYT domain
LJY22_06990	COG1328	CTP reductase activity
LJY22_06995	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LJY22_07005	COG0861	Integral membrane protein TerC family
LJY22_07015	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LJY22_07025	COG0814	amino acid
LJY22_07040	COG1120	ATPase activity
LJY22_07045	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LJY22_07055	COG4774	siderophore transport
LJY22_07065	COG1132	(ABC) transporter
LJY22_07070	COG1132	(ABC) transporter
LJY22_07075	COG2165	general secretion pathway protein
LJY22_07095	COG0443	Heat shock 70 kDa protein
LJY22_07100	COG0443	Heat shock 70 kDa protein
LJY22_07145	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LJY22_07150	COG1643	Atp-dependent helicase
LJY22_07165	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LJY22_07175	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LJY22_07180	COG1215	transferase activity, transferring glycosyl groups
LJY22_07185	COG0438	transferase activity, transferring glycosyl groups
LJY22_07215	COG0438	transferase activity, transferring glycosyl groups
LJY22_07225	COG2204	response regulator
LJY22_07255	COG1793	dna ligase
LJY22_07265	COG0534	Mate efflux family protein
LJY22_07270	COG0307	riboflavin synthase, alpha
LJY22_07280	COG3001	Fructosamine kinase
LJY22_07290	COG3706	GGDEF domain
LJY22_07300	COG0791	NLP P60 protein
LJY22_07340	COG3148	PFAM DTW domain containing protein
LJY22_07345	COG1940	carbohydrate kinase activity
LJY22_07355	COG0303	'Molybdopterin
LJY22_07360	COG0746	molybdenum cofactor guanylyltransferase activity
LJY22_07365	COG3842	ATPase activity
LJY22_07380	COG2204	response regulator
LJY22_07385	COG4191	Histidine kinase
LJY22_07390	COG0488	(ABC) transporter
LJY22_07395	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LJY22_07425	COG0243	molybdopterin cofactor binding
LJY22_07425	COG3383	formate dehydrogenase (NAD+) activity
LJY22_07430	COG0437	4 iron, 4 sulfur cluster binding
LJY22_07455	COG0004	ammonium transporteR
LJY22_07465	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
LJY22_07470	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
LJY22_07480	COG1177	transmembrane transport
LJY22_07490	COG3842	ATPase activity
LJY22_07515	COG0589	response to stress
LJY22_07520	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LJY22_07535	COG2217	Heavy metal translocating P-type atpase
LJY22_07545	COG2010	Cytochrome c
LJY22_07560	COG3278	Belongs to the heme-copper respiratory oxidase family
LJY22_07575	COG2205	protein histidine kinase activity
LJY22_07575	COG0784	Response regulator, receiver
LJY22_07665	COG3120	sequence-specific DNA binding
LJY22_07670	COG1067	ATP-dependent peptidase activity
LJY22_07675	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LJY22_07690	COG0488	(ABC) transporter
LJY22_07700	COG0116	Belongs to the methyltransferase superfamily
LJY22_07700	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LJY22_07710	COG0167	dihydroorotate dehydrogenase activity
LJY22_07715	COG2902	Dehydrogenase
LJY22_07725	COG0308	aminopeptidase N
LJY22_07740	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
LJY22_07745	COG1956	GAF domain-containing protein
LJY22_07750	COG1132	(ABC) transporter
LJY22_07755	COG2995	paraquat-inducible protein a
LJY22_07760	COG3008	intermembrane lipid transfer
LJY22_07785	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LJY22_07790	COG1666	GTP binding
LJY22_07800	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJY22_07810	COG4597	amino acid ABC transporter
LJY22_07815	COG0765	amino acid transport
LJY22_07820	COG1126	abc transporter atp-binding protein
LJY22_07825	COG0670	Belongs to the BI1 family
LJY22_07835	COG2920	part of a sulfur-relay system
LJY22_07840	COG1254	Belongs to the acylphosphatase family
LJY22_07890	COG3706	GGDEF domain
LJY22_07895	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LJY22_07900	COG0602	queuosine metabolic process
LJY22_07905	COG0561	phosphatase activity
LJY22_07930	COG2828	Protein conserved in bacteria
LJY22_07940	COG0372	Belongs to the citrate synthase family
LJY22_07945	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
LJY22_07980	COG0730	response to heat
LJY22_07985	COG2358	TRAP transporter, solute receptor (TAXI family
LJY22_08000	COG0457	Tetratricopeptide repeat
LJY22_08070	COG4790	Type iii secretion
LJY22_08075	COG4794	Type iii secretion
LJY22_08080	COG4791	protein targeting
LJY22_08085	COG4792	protein secretion
LJY22_08110	COG1028	Short-chain dehydrogenase reductase Sdr
LJY22_08140	COG3177	Filamentation induced by cAMP protein fic
LJY22_08160	COG4669	(LipO)protein
LJY22_08230	COG1012	belongs to the aldehyde dehydrogenase family
LJY22_08235	COG3284	Transcriptional regulator
LJY22_08260	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LJY22_08265	COG0363	glucosamine-6-phosphate deaminase activity
LJY22_08270	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
LJY22_08285	COG4565	transcriptional regulatory protein
LJY22_08290	COG3290	protein histidine kinase activity
LJY22_08305	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJY22_08320	COG1566	PFAM secretion protein HlyD family protein
LJY22_08330	COG0583	DNA-binding transcription factor activity
LJY22_08360	COG1280	lysine exporter protein (LysE YggA)
LJY22_08365	COG5507	3-demethylubiquinone-9 3-methyltransferase
LJY22_08385	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LJY22_08415	COG0625	glutathione transferase activity
LJY22_08475	COG1619	proteins homologs of microcin C7 resistance protein MccF
LJY22_08545	COG0456	acetyltransferase
LJY22_08600	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LJY22_08610	COG3768	UPF0283 membrane protein
LJY22_08615	COG3106	COG3106 Predicted ATPase
LJY22_08630	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LJY22_08635	COG2205	protein histidine kinase activity
LJY22_08635	COG0784	Response regulator, receiver
LJY22_08645	COG0494	nUDIX hydrolase
LJY22_08650	COG0814	amino acid
LJY22_08655	COG1760	l-serine dehydratase
LJY22_08660	COG2200	EAL domain
LJY22_08670	COG0720	synthase
LJY22_08675	COG0840	transmembrane signaling receptor activity
LJY22_08680	COG0017	Asparaginyl-tRNA synthetase
LJY22_08690	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LJY22_08705	COG1448	Aminotransferase
LJY22_08725	COG0840	transmembrane signaling receptor activity
LJY22_08730	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LJY22_08760	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
LJY22_08775	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LJY22_08780	COG3108	Peptidase M15
LJY22_08785	COG2989	Protein conserved in bacteria
LJY22_08810	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LJY22_08820	COG4235	cytochrome complex assembly
LJY22_08820	COG3088	subunit of a heme lyase
LJY22_08835	COG3301	Polysulphide reductase, NrfD
LJY22_08840	COG0437	4 iron, 4 sulfur cluster binding
LJY22_08850	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
LJY22_08870	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LJY22_08875	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LJY22_08905	COG0019	diaminopimelate decarboxylase activity
LJY22_08945	COG0322	excinuclease ABC activity
LJY22_08950	COG2197	response regulator
LJY22_08955	COG0417	DNA replication proofreading
LJY22_08975	COG1187	pseudouridine synthase activity
LJY22_08985	COG0009	L-threonylcarbamoyladenylate synthase
LJY22_08990	COG0613	PHP domain protein
LJY22_09000	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LJY22_09005	COG0512	Glutamine amidotransferase of anthranilate synthase
LJY22_09015	COG0135	phosphoribosylanthranilate isomerase activity
LJY22_09015	COG0134	indole-3-glycerol-phosphate synthase activity
LJY22_09025	COG0159	tryptophan synthase activity
LJY22_09030	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LJY22_09035	COG0318	PFAM AMP-dependent synthetase and ligase
LJY22_09040	COG1301	dicarboxylic acid transport
LJY22_09060	COG2917	probably involved in intracellular septation
LJY22_09070	COG2350	Protein conserved in bacteria
LJY22_09080	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
LJY22_09085	COG0583	DNA-binding transcription factor activity
LJY22_09100	COG5001	Diguanylate cyclase
LJY22_09105	COG1032	radical SAM domain protein
LJY22_09120	COG0840	transmembrane signaling receptor activity
LJY22_09125	COG0745	RESPONSE REGULATOR receiver
LJY22_09130	COG5002	protein histidine kinase activity
LJY22_09130	COG3850	Histidine kinase
LJY22_09185	COG0577	efflux transmembrane transporter activity
LJY22_09185	COG1136	(ABC) transporter
LJY22_09195	COG0577	efflux transmembrane transporter activity
LJY22_09195	COG1136	(ABC) transporter
LJY22_09205	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJY22_09235	COG3118	belongs to the thioredoxin family
LJY22_09240	COG4232	protein-disulfide reductase activity
LJY22_09275	COG2863	cytochrome
LJY22_09280	COG3258	Cytochrome c
LJY22_09285	COG2995	paraquat-inducible protein a
LJY22_09290	COG3008	intermembrane lipid transfer
LJY22_09290	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LJY22_09305	COG4166	transmembrane transport
LJY22_09315	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
LJY22_09320	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
LJY22_09330	COG0539	negative regulation of cytoplasmic translation
LJY22_09335	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
LJY22_09340	COG0616	signal peptide processing
LJY22_09345	COG1028	Short-chain dehydrogenase reductase Sdr
LJY22_09360	COG0587	DNA-directed DNA polymerase activity
LJY22_09365	COG0835	chemotaxis
LJY22_09365	COG0784	Response regulator, receiver
LJY22_09370	COG1940	carbohydrate kinase activity
LJY22_09375	COG0469	pyruvate kinase activity
LJY22_09380	COG4667	esterase of the alpha-beta hydrolase superfamily
LJY22_09395	COG0733	neurotransmitter:sodium symporter activity
LJY22_09410	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LJY22_09410	COG1263	PTS System
LJY22_09415	COG0084	hydrolase, TatD family'
LJY22_09420	COG0470	DNA polymerase III
LJY22_09425	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LJY22_09430	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LJY22_09460	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LJY22_09465	COG0416	fatty acid biosynthetic process
LJY22_09475	COG1399	metal-binding, possibly nucleic acid-binding protein
LJY22_09480	COG0424	maF-like protein
LJY22_09485	COG0564	pseudouridine synthase activity
LJY22_09490	COG1530	ribonuclease E activity
LJY22_09495	COG0659	secondary active sulfate transmembrane transporter activity
LJY22_09500	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LJY22_09505	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
LJY22_09515	COG0572	uridine kinase
LJY22_09525	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LJY22_09525	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LJY22_09535	COG2186	Transcriptional regulator
LJY22_09540	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LJY22_09545	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
LJY22_09550	COG0653	protein targeting
LJY22_09555	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LJY22_09560	COG3706	GGDEF domain
LJY22_09565	COG0366	Alpha amylase catalytic
LJY22_09570	COG1122	ATPase activity
LJY22_09575	COG4120	Belongs to the binding-protein-dependent transport system permease family
LJY22_09585	COG3092	negative regulation of chromosome organization
LJY22_09590	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LJY22_09595	COG0857	belongs to the CobB CobQ family
LJY22_09595	COG0280	phosphate acetyltransferase
LJY22_09600	COG3174	membrane
LJY22_09610	COG0435	Glutathione S-transferase
LJY22_09620	COG0444	Belongs to the ABC transporter superfamily
LJY22_09625	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LJY22_09630	COG0601	transmembrane transport
LJY22_09640	COG0314	molybdopterin synthase activity
LJY22_09645	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
LJY22_09650	COG0315	cyclic pyranopterin monophosphate synthase activity
LJY22_09655	COG0521	Mo-molybdopterin cofactor biosynthetic process
LJY22_09660	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LJY22_09665	COG0391	Required for morphogenesis under gluconeogenic growth conditions
LJY22_09670	COG2198	Histidine kinase
LJY22_09675	COG2204	response regulator
LJY22_09680	COG0556	nucleotide-excision repair
LJY22_09690	COG4657	Part of a membrane complex involved in electron transport
LJY22_09695	COG2878	Part of a membrane complex involved in electron transport
LJY22_09700	COG4656	Part of a membrane complex involved in electron transport
LJY22_09705	COG4658	electron transport chain
LJY22_09710	COG4659	FMN binding
LJY22_09715	COG4660	Part of a membrane complex involved in electron transport
LJY22_09720	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LJY22_09725	COG0346	lactoylglutathione lyase activity
LJY22_09735	COG2885	chlorophyll binding
LJY22_09740	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LJY22_09745	COG2056	Na+-H+ antiporter family
LJY22_09755	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LJY22_09775	COG1454	alcohol dehydrogenase
LJY22_09775	COG1012	belongs to the aldehyde dehydrogenase family
LJY22_09780	COG2095	MarC family integral membrane protein
LJY22_09785	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LJY22_09790	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LJY22_09795	COG1757	Na H antiporter
LJY22_09810	COG3081	Nucleoid-associated protein
LJY22_09815	COG3082	Protein of unknown function (DUF1414)
LJY22_09830	COG0123	including yeast histone deacetylase and acetoin utilization protein
LJY22_09845	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LJY22_09850	COG0778	Nitroreductase
LJY22_09860	COG0446	pyridine nucleotide-disulphide oxidoreductase
LJY22_09860	COG1902	pentaerythritol trinitrate reductase activity
LJY22_09865	COG0616	signal peptide processing
LJY22_09870	COG0252	asparaginase activity
LJY22_09875	COG3139	Protein of unknown function (DUF1315)
LJY22_09885	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LJY22_09890	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LJY22_09905	COG2226	methyltransferase
LJY22_09920	COG1785	Belongs to the alkaline phosphatase family
LJY22_09930	COG0346	lactoylglutathione lyase activity
LJY22_09935	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
LJY22_09940	COG0668	transmembrane transport
LJY22_09945	COG2983	Belongs to the UPF0260 family
LJY22_09950	COG2261	transglycosylase associated protein
LJY22_09965	COG3681	Belongs to the UPF0597 family
LJY22_09970	COG0251	oxidation-reduction process
LJY22_09975	COG0814	amino acid
LJY22_09980	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LJY22_09985	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LJY22_10000	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LJY22_10005	COG2832	Protein of unknown function (DUF454)
LJY22_10010	COG0745	RESPONSE REGULATOR receiver
LJY22_10015	COG0583	DNA-binding transcription factor activity
LJY22_10020	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LJY22_10025	COG1286	toxin biosynthetic process
LJY22_10030	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
LJY22_10035	COG0285	dihydrofolate synthase activity
LJY22_10040	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
LJY22_10045	COG0101	tRNA pseudouridine synthase activity
LJY22_10055	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LJY22_10060	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LJY22_10065	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LJY22_10070	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LJY22_10070	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
LJY22_10075	COG0431	NADPH-dependent FMN reductase
LJY22_10085	COG3101	peptidyl-lysine hydroxylation
LJY22_10090	COG2860	membrane
LJY22_10095	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
LJY22_10100	COG2890	protein-(glutamine-N5) methyltransferase activity
LJY22_10105	COG2840	Smr protein MutS2
LJY22_10110	COG2062	phosphohistidine phosphatase, SixA
LJY22_10125	COG1250	3-hydroxyacyl-CoA dehydrogenase
LJY22_10125	COG1024	Enoyl-CoA hydratase
LJY22_10130	COG0183	Belongs to the thiolase family
LJY22_10170	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LJY22_10175	COG1138	Cytochrome C-type biogenesis protein
LJY22_10180	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
LJY22_10185	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LJY22_10190	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LJY22_10195	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LJY22_10200	COG4133	protoheme IX ABC transporter activity
LJY22_10210	COG0835	chemotaxis
LJY22_10220	COG1192	Involved in chromosome partitioning
LJY22_10225	COG2201	protein-glutamate methylesterase activity
LJY22_10230	COG2198	Histidine kinase
LJY22_10230	COG0784	Response regulator, receiver
LJY22_10230	COG0643	Histidine kinase
LJY22_10235	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
LJY22_10275	COG1987	bacterial-type flagellum assembly
LJY22_10325	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LJY22_10335	COG1677	Flagellar hook-basal body complex protein FliE
LJY22_10355	COG1516	flagellar protein fliS
LJY22_10365	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
LJY22_10370	COG1334	flagellar protein FlaG
LJY22_10375	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LJY22_10380	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LJY22_10385	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LJY22_10390	COG2837	iron assimilation
LJY22_10415	COG1393	Belongs to the ArsC family
LJY22_10420	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LJY22_10435	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
LJY22_10440	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LJY22_10450	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LJY22_10465	COG4783	chaperone-mediated protein folding
LJY22_10470	COG1393	Belongs to the ArsC family
LJY22_10490	COG2233	PERMEase
LJY22_10495	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LJY22_10500	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LJY22_10505	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LJY22_10510	COG0121	glutamine amidotransferase
LJY22_10515	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LJY22_10520	COG1960	acyl-CoA dehydrogenase activity
LJY22_10555	COG0328	RNA-DNA hybrid ribonuclease activity
LJY22_10560	COG2226	methyltransferase
LJY22_10565	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LJY22_10570	COG0741	lytic transglycosylase activity
LJY22_10570	COG1388	LysM domain
LJY22_10580	COG3021	interspecies interaction between organisms
LJY22_10585	COG0347	Belongs to the P(II) protein family
LJY22_10600	COG0825	malonyl-CoA metabolic process
LJY22_10605	COG0587	DNA-directed DNA polymerase activity
LJY22_10615	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LJY22_10620	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LJY22_10630	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LJY22_10635	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
LJY22_10645	COG0750	zinc metalloprotease
LJY22_10650	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
LJY22_10655	COG0575	Belongs to the CDS family
LJY22_10660	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
LJY22_10665	COG0233	cytoplasmic translational termination
LJY22_10670	COG0528	UMP kinase activity
LJY22_10675	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LJY22_10680	COG0052	Belongs to the universal ribosomal protein uS2 family
LJY22_10685	COG0024	Methionine aminopeptidase
LJY22_10690	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
LJY22_10700	COG0564	pseudouridine synthase activity
LJY22_10735	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LJY22_10740	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LJY22_10765	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
LJY22_10775	COG0254	rRNA binding
LJY22_10780	COG1720	tRNA m6t6A37 methyltransferase activity
LJY22_10785	COG0442	prolyl-tRNA aminoacylation
LJY22_10805	COG0733	neurotransmitter:sodium symporter activity
LJY22_10820	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LJY22_10825	COG0514	ATP-dependent DNA helicase (RecQ)
LJY22_10830	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LJY22_10845	COG1477	protein flavinylation
LJY22_10850	COG2871	sodium ion transport
LJY22_10855	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LJY22_10860	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LJY22_10865	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LJY22_10870	COG1805	sodium ion transport
LJY22_10875	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LJY22_10880	COG0271	Belongs to the BolA IbaG family
LJY22_10885	COG2813	Specifically methylates the guanine in position
LJY22_10890	COG3056	Lipoprotein
LJY22_10910	COG1595	DNA-templated transcription, initiation
LJY22_10925	COG3248	Nucleoside-binding outer membrane protein
LJY22_10930	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LJY22_10935	COG0693	protein deglycase activity
LJY22_10940	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LJY22_10945	COG3706	GGDEF domain
LJY22_10950	COG2166	iron-sulfur cluster assembly
LJY22_10955	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LJY22_10960	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
LJY22_10970	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LJY22_10970	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
LJY22_10990	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LJY22_10995	COG1074	ATP-dependent DNA helicase activity
LJY22_11000	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
LJY22_11020	COG3141	response to X-ray
LJY22_11025	COG2171	N-acyltransferase activity
LJY22_11030	COG0584	glycerophosphoryl diester phosphodiesterase
LJY22_11035	COG2271	Major facilitator Superfamily
LJY22_11040	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LJY22_11045	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LJY22_11050	COG1349	DNA-binding transcription factor activity
LJY22_11055	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LJY22_11080	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LJY22_11085	COG1609	Transcriptional regulator
LJY22_11090	COG2211	Major facilitator Superfamily
LJY22_11100	COG1609	Transcriptional regulator
LJY22_11105	COG2017	converts alpha-aldose to the beta-anomer
LJY22_11110	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
LJY22_11120	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LJY22_11125	COG1609	Transcriptional regulator
LJY22_11130	COG3250	beta-galactosidase activity
LJY22_11135	COG2731	YhcH YjgK YiaL family protein
LJY22_11140	COG0531	amino acid
LJY22_11145	COG0583	DNA-binding transcription factor activity
LJY22_11205	COG4964	Belongs to the GSP D family
LJY22_11230	COG2169	Transcriptional regulator
LJY22_11235	COG1022	Amp-dependent synthetase and ligase
LJY22_11245	COG0583	DNA-binding transcription factor activity
LJY22_11250	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LJY22_11255	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
LJY22_11265	COG0560	Phosphoserine phosphatase
LJY22_11275	COG0813	purine-nucleoside phosphorylase activity
LJY22_11280	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
LJY22_11285	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
LJY22_11295	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LJY22_11300	COG0084	hydrolase, TatD family'
LJY22_11310	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
LJY22_11330	COG3153	acetyltransferase
LJY22_11335	COG3154	lipid carrier protein
LJY22_11345	COG0826	peptidase U32
LJY22_11350	COG0826	peptidase U32
LJY22_11355	COG0534	Mate efflux family protein
LJY22_11370	COG1185	polyribonucleotide nucleotidyltransferase activity
LJY22_11375	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
LJY22_11380	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
LJY22_11385	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LJY22_11390	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
LJY22_11395	COG0195	Participates in both transcription termination and antitermination
LJY22_11400	COG0779	Required for maturation of 30S ribosomal subunits
LJY22_11415	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LJY22_11420	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LJY22_11425	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LJY22_11430	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LJY22_11435	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
LJY22_11440	COG1534	Rna-binding protein
LJY22_11445	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LJY22_11450	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
LJY22_11455	COG2027	D-alanyl-D-alanine carboxypeptidase
LJY22_11465	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LJY22_11470	COG0739	heme binding
LJY22_11490	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LJY22_11495	COG0628	permease
LJY22_11500	COG2813	Specifically methylates the guanine in position
LJY22_11505	COG2205	protein histidine kinase activity
LJY22_11505	COG0784	Response regulator, receiver
LJY22_11510	COG0747	negative chemotaxis
LJY22_11520	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LJY22_11525	COG0444	Belongs to the ABC transporter superfamily
LJY22_11530	COG4608	Belongs to the ABC transporter superfamily
LJY22_11540	COG2971	BadF BadG BcrA BcrD
LJY22_11555	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LJY22_11560	COG3842	ATPase activity
LJY22_11570	COG1840	ABC-type Fe3 transport system, periplasmic component
LJY22_11575	COG0004	ammonium transporteR
LJY22_11580	COG0347	Belongs to the P(II) protein family
LJY22_11585	COG3112	Uncharacterised protein family (UPF0231)
LJY22_11590	COG1049	propionate catabolic process, 2-methylcitrate cycle
LJY22_11595	COG1752	Esterase of the alpha-beta hydrolase superfamily
LJY22_11600	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LJY22_11605	COG1643	Atp-dependent helicase
LJY22_11610	COG1489	DNA binding
LJY22_11620	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LJY22_11630	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LJY22_11635	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
LJY22_11640	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LJY22_11645	COG1560	Kdo2-lipid A biosynthetic process
LJY22_11650	COG0842	Transport permease protein
LJY22_11655	COG1131	(ABC) transporter
LJY22_11660	COG0659	secondary active sulfate transmembrane transporter activity
LJY22_11665	COG0288	reversible hydration of carbon dioxide
LJY22_11680	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LJY22_11685	COG0508	dehydrogenase complex catalyzes the overall conversion of
LJY22_11690	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
LJY22_11695	COG2186	Transcriptional regulator
LJY22_11705	COG0157	Belongs to the NadC ModD family
LJY22_11715	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LJY22_11720	COG1459	type II secretion system
LJY22_11730	COG0237	dephospho-CoA kinase activity
LJY22_11735	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
LJY22_11740	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
LJY22_11755	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LJY22_11760	COG0228	four-way junction DNA binding
LJY22_11765	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LJY22_11770	COG4137	Cytochrome C assembly protein
LJY22_11775	COG4536	flavin adenine dinucleotide binding
LJY22_11780	COG1854	S-ribosylhomocysteine lyase activity
LJY22_11795	COG0612	Peptidase, M16
LJY22_11800	COG1238	metal cluster binding
LJY22_11810	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
LJY22_11815	COG0511	ligase activity, forming carbon-carbon bonds
LJY22_11815	COG5016	pyruvate
LJY22_11820	COG3630	sodium ion export across plasma membrane
LJY22_11880	COG0527	aspartate kinase activity
LJY22_11885	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LJY22_11890	COG2137	regulation of response to DNA damage stimulus
LJY22_11895	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LJY22_11900	COG1546	Belongs to the CinA family
LJY22_11905	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LJY22_11910	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LJY22_11920	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
LJY22_11925	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
LJY22_11935	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
LJY22_11940	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
LJY22_11945	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
LJY22_11950	COG0148	phosphopyruvate hydratase activity
LJY22_11955	COG0504	CTP synthase activity
LJY22_11960	COG3956	TIGRFAM MazG family protein
LJY22_11965	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LJY22_11970	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LJY22_11980	COG0736	holo-[acyl-carrier-protein] synthase activity
LJY22_11985	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
LJY22_11990	COG1381	Involved in DNA repair and RecF pathway recombination
LJY22_11995	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LJY22_12005	COG0681	Belongs to the peptidase S26 family
LJY22_12010	COG0481	GTPase activity
LJY22_12015	COG3086	response to oxidative stress
LJY22_12030	COG1595	DNA-templated transcription, initiation
LJY22_12035	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LJY22_12040	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
LJY22_12045	COG0354	folic acid binding
LJY22_12060	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LJY22_12065	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LJY22_12070	COG3079	Belongs to the UPF0149 family
LJY22_12075	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
LJY22_12085	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LJY22_12090	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
LJY22_12095	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LJY22_12105	COG0583	DNA-binding transcription factor activity
LJY22_12120	COG0668	transmembrane transport
LJY22_12125	COG0191	fructose-bisphosphate aldolase activity
LJY22_12130	COG0126	phosphoglycerate kinase activity
LJY22_12140	COG4771	TonB-dependent receptor
LJY22_12145	COG0583	DNA-binding transcription factor activity
LJY22_12150	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LJY22_12155	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LJY22_12165	COG3091	SprT-like family
LJY22_12170	COG2356	endonuclease I
LJY22_12175	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LJY22_12180	COG0189	ligase activity
LJY22_12185	COG1678	Uncharacterized ACR, COG1678
LJY22_12190	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LJY22_12205	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LJY22_12210	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LJY22_12215	COG0762	integral membrane protein
LJY22_12220	COG1872	DUF167
LJY22_12230	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LJY22_12235	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LJY22_12240	COG2066	Belongs to the glutaminase family
LJY22_12250	COG0220	tRNA (guanine-N7-)-methyltransferase activity
LJY22_12260	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
LJY22_12335	COG1012	belongs to the aldehyde dehydrogenase family
LJY22_12380	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LJY22_12390	COG3394	polysaccharide catabolic process
LJY22_12395	COG1486	melibiose metabolic process
LJY22_12400	COG1447	Phosphotransferase system cellobiose-specific component IIA
LJY22_12405	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LJY22_12410	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LJY22_12415	COG0726	polysaccharide deacetylase
LJY22_12425	COG1028	Short-chain dehydrogenase reductase Sdr
LJY22_12440	COG0795	lipopolysaccharide-transporting ATPase activity
LJY22_12445	COG0795	lipopolysaccharide-transporting ATPase activity
LJY22_12455	COG2927	DNA polymerase III (CHI subunit)
LJY22_12460	COG0525	valine-tRNA ligase activity
LJY22_12470	COG0456	acetyltransferase
LJY22_12500	COG0540	Belongs to the ATCase OTCase family
LJY22_12505	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
LJY22_12510	COG0251	oxidation-reduction process
LJY22_12515	COG0204	Acyl-transferase
LJY22_12525	COG5007	Belongs to the BolA IbaG family
LJY22_12535	COG2854	intermembrane phospholipid transfer
LJY22_12540	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LJY22_12545	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LJY22_12550	COG1127	ABC transporter
LJY22_12560	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LJY22_12560	COG0517	IMP dehydrogenase activity
LJY22_12570	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
LJY22_12575	COG1137	ATPase activity
LJY22_12585	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LJY22_12590	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJY22_12595	COG1660	Displays ATPase and GTPase activities
LJY22_12600	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJY22_12605	COG2239	Acts as a magnesium transporter
LJY22_12610	COG0312	modulator of DNA gyrase
LJY22_12615	COG3028	Belongs to the UPF0307 family
LJY22_12620	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LJY22_12625	COG0564	pseudouridine synthase activity
LJY22_12635	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LJY22_12640	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
LJY22_12645	COG0312	modulator of DNA gyrase
LJY22_12650	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LJY22_12655	COG3164	Protein of unknown function
LJY22_12665	COG0424	maF-like protein
LJY22_12670	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
LJY22_12675	COG1792	Involved in formation and maintenance of cell shape
LJY22_12680	COG1077	Cell shape determining protein MreB Mrl
LJY22_12715	COG2165	general secretion pathway protein
LJY22_12725	COG1459	type II secretion system
LJY22_12730	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LJY22_12740	COG3267	Type II secretory pathway component ExeA
LJY22_12740	COG3409	Peptidoglycan-binding domain 1 protein
LJY22_12745	COG1450	Type ii and iii secretion system protein
LJY22_12765	COG2199	diguanylate cyclase activity
LJY22_12765	COG2200	EAL domain
LJY22_12770	COG0629	single-stranded DNA binding
LJY22_12785	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LJY22_12795	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
LJY22_12800	COG0527	aspartate kinase activity
LJY22_12805	COG0646	methionine synthase
LJY22_12805	COG1410	methionine synthase
LJY22_12865	COG0175	sulfate reduction
LJY22_12870	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LJY22_12875	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LJY22_12895	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LJY22_12900	COG0735	belongs to the Fur family
LJY22_12910	COG0166	Belongs to the GPI family
LJY22_12915	COG0432	Pfam Uncharacterised protein family UPF0047
LJY22_12920	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LJY22_12945	COG2965	DNA replication, synthesis of RNA primer
LJY22_12950	COG0360	Binds together with S18 to 16S ribosomal RNA
LJY22_12955	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LJY22_12960	COG0338	D12 class N6 adenine-specific DNA methyltransferase
LJY22_12970	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
LJY22_12975	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LJY22_13005	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LJY22_13015	COG0678	peroxiredoxin activity
LJY22_13015	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LJY22_13030	COG0165	Argininosuccinate lyase
LJY22_13030	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
LJY22_13035	COG0137	argininosuccinate synthase activity
LJY22_13045	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
LJY22_13055	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
LJY22_13065	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
LJY22_13070	COG0527	aspartate kinase activity
LJY22_13070	COG0460	homoserine dehydrogenase
LJY22_13075	COG0626	cystathionine gamma-synthase activity
LJY22_13080	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
LJY22_13085	COG0281	malic enzyme
LJY22_13095	COG2906	2 iron, 2 sulfur cluster binding
LJY22_13100	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LJY22_13105	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LJY22_13120	COG2168	tRNA wobble position uridine thiolation
LJY22_13125	COG2923	Belongs to the DsrF TusC family
LJY22_13130	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
LJY22_13135	COG2964	Protein conserved in bacteria
LJY22_13140	COG0545	Peptidyl-prolyl cis-trans isomerase
LJY22_13155	COG1446	asparaginase
LJY22_13160	COG1047	Peptidyl-prolyl cis-trans
LJY22_13175	COG2249	NAD(P)H dehydrogenase (quinone) activity
LJY22_13180	COG0488	(ABC) transporter
LJY22_13190	COG0429	hydrolase of the alpha beta-hydrolase fold
LJY22_13195	COG3089	Belongs to the UPF0270 family
LJY22_13200	COG3954	Phosphoribulokinase
LJY22_13205	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LJY22_13225	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LJY22_13230	COG0512	Glutamine amidotransferase of anthranilate synthase
LJY22_13245	COG0180	Tryptophanyl-tRNA synthetase
LJY22_13250	COG0546	phosphoglycolate phosphatase activity
LJY22_13255	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LJY22_13260	COG0557	exoribonuclease II activity
LJY22_13265	COG1959	2 iron, 2 sulfur cluster binding
LJY22_13270	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LJY22_13270	COG1017	nitric oxide dioxygenase activity
LJY22_13275	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
LJY22_13280	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LJY22_13285	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
LJY22_13290	COG0330	HflC and HflK could
LJY22_13295	COG0330	HflC and HflK could
LJY22_13300	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LJY22_13310	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LJY22_13315	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LJY22_13325	COG0802	atpase or kinase
LJY22_13330	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LJY22_13395	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
LJY22_13400	COG1162	GTPase activity
LJY22_13405	COG0688	phosphatidylethanolamine metabolic process
LJY22_13410	COG3273	potassium ion transport
LJY22_13410	COG0471	metal ion transport
LJY22_13420	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LJY22_13425	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LJY22_13430	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
LJY22_13435	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LJY22_13440	COG1045	serine acetyltransferase
LJY22_13445	COG4942	peptidase
LJY22_13465	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
LJY22_13470	COG1053	succinate dehydrogenase
LJY22_13475	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LJY22_13480	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
LJY22_13500	COG1509	lysine 2,3-aminomutase activity
LJY22_13505	COG1285	pathogenesis
LJY22_13515	COG0459	protein refolding
LJY22_13525	COG0534	Mate efflux family protein
LJY22_13530	COG0205	6-phosphofructokinase activity
LJY22_13535	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LJY22_13540	COG3678	ATP-independent chaperone mediated protein folding
LJY22_13545	COG0745	RESPONSE REGULATOR receiver
LJY22_13550	COG2205	protein histidine kinase activity
LJY22_13560	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LJY22_13565	COG3030	protein affecting phage T7 exclusion by the F plasmid
LJY22_13570	COG1027	Aspartate ammonia-lyase
LJY22_13575	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LJY22_13580	COG4232	protein-disulfide reductase activity
LJY22_13590	COG3263	regulation of cellular component size
LJY22_13600	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LJY22_13625	COG2814	Major facilitator Superfamily
LJY22_13640	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LJY22_13645	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
LJY22_13650	COG0511	ligase activity, forming carbon-carbon bonds
LJY22_13655	COG0439	Biotin carboxylase
LJY22_13660	COG2264	protein methyltransferase activity
LJY22_13665	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LJY22_13670	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
LJY22_13680	COG0488	(ABC) transporter
LJY22_13730	COG1982	Orn Lys Arg decarboxylase major
LJY22_13735	COG0531	amino acid
LJY22_13745	COG3710	Transcriptional regulator
LJY22_13750	COG0789	Transcriptional regulator
LJY22_13755	COG0138	bifunctional purine biosynthesis protein purh
LJY22_13760	COG0151	Belongs to the GarS family
LJY22_13775	COG1253	flavin adenine dinucleotide binding
LJY22_13780	COG3068	Protein conserved in bacteria
LJY22_13790	COG1573	uracil-dna glycosylase
LJY22_13795	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LJY22_13800	COG2816	NAD+ diphosphatase activity
LJY22_13805	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
LJY22_13810	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LJY22_13815	COG0085	RNA polymerase activity
LJY22_13820	COG0222	ribosome binding
LJY22_13825	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LJY22_13840	COG0250	Participates in transcription elongation, termination and antitermination
LJY22_13845	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LJY22_13850	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LJY22_13880	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
LJY22_13880	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
LJY22_13885	COG0812	UDP-N-acetylmuramate dehydrogenase activity
LJY22_13895	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LJY22_13965	COG4206	TonB-dependent receptor
LJY22_14025	COG2003	Belongs to the UPF0758 family
LJY22_14050	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
LJY22_14065	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LJY22_14075	COG0732	type I restriction modification DNA specificity domain
LJY22_14080	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
LJY22_14110	COG3302	dmso reductase anchor subunit
LJY22_14115	COG0437	4 iron, 4 sulfur cluster binding
LJY22_14120	COG0243	molybdopterin cofactor binding
LJY22_14130	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LJY22_14130	COG2221	Nitrite and sulphite reductase 4Fe-4S
LJY22_14135	COG0784	Response regulator, receiver
LJY22_14135	COG2205	protein histidine kinase activity
LJY22_14145	COG3706	GGDEF domain
LJY22_14165	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LJY22_14170	COG0534	Mate efflux family protein
LJY22_14175	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
LJY22_14180	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LJY22_14185	COG2937	Belongs to the GPAT DAPAT family
LJY22_14190	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
LJY22_14195	COG3161	chorismate lyase activity
LJY22_14200	COG1580	Controls the rotational direction of flagella during chemotaxis
LJY22_14205	COG0705	Rhomboid family
LJY22_14210	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LJY22_14220	COG2177	Part of the ABC transporter FtsEX involved in
LJY22_14225	COG2884	Cell division ATP-binding protein ftsE
LJY22_14230	COG0552	protein localization to endoplasmic reticulum
LJY22_14235	COG0742	ribosomal rna small subunit methyltransferase
LJY22_14245	COG2095	MarC family integral membrane protein
LJY22_14285	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LJY22_14290	COG0640	Transcriptional regulator
LJY22_14295	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
LJY22_14300	COG1280	lysine exporter protein (LysE YggA)
LJY22_14305	COG2267	carboxylic ester hydrolase activity
LJY22_14310	COG0561	phosphatase activity
LJY22_14325	COG3148	PFAM DTW domain containing protein
LJY22_14330	COG2200	EAL domain
LJY22_14330	COG2199	diguanylate cyclase activity
LJY22_14330	COG3287	FIST C domain
LJY22_14335	COG1011	Hydrolase
LJY22_14340	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
LJY22_14350	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LJY22_14355	COG0019	diaminopimelate decarboxylase activity
LJY22_14365	COG1965	Belongs to the frataxin family
LJY22_14370	COG3072	Adenylate cyclase
LJY22_14375	COG0181	hydroxymethylbilane synthase activity
LJY22_14380	COG1587	Uroporphyrinogen-III synthase
LJY22_14385	COG2959	enzyme of heme biosynthesis
LJY22_14390	COG3071	HemY protein
LJY22_14430	COG0633	Ferredoxin
LJY22_14435	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
LJY22_14450	COG3118	belongs to the thioredoxin family
LJY22_14455	COG0513	Belongs to the DEAD box helicase family
LJY22_14460	COG0248	Ppx GppA phosphatase
LJY22_14465	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
LJY22_14475	COG0514	ATP-dependent DNA helicase (RecQ)
LJY22_14480	COG2962	Rard protein
LJY22_14490	COG1280	lysine exporter protein (LysE YggA)
LJY22_14495	COG0405	Gamma-glutamyltransferase
LJY22_14500	COG0210	DNA helicase
LJY22_14510	COG3220	belongs to the UPF0276 family
LJY22_14540	COG0006	proline dipeptidase activity
LJY22_14540	COG0006	proline dipeptidase activity
LJY22_14555	COG2104	thiamine diphosphate biosynthetic process
LJY22_14560	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LJY22_14575	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
LJY22_14580	COG2132	Multicopper oxidase
LJY22_14630	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LJY22_14640	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
LJY22_14645	COG0408	coproporphyrinogen oxidase activity
LJY22_14650	COG0009	L-threonylcarbamoyladenylate synthase
LJY22_14655	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LJY22_14660	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LJY22_14665	COG0551	DNA topoisomerase type I activity
LJY22_14670	COG2922	Belongs to the Smg family
LJY22_14675	COG0758	DNA mediated transformation
LJY22_14685	COG0242	peptide deformylase activity
LJY22_14690	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LJY22_14695	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LJY22_14695	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LJY22_14700	COG0569	domain protein
LJY22_14705	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LJY22_14715	COG1272	protein, Hemolysin III
LJY22_14720	COG4326	sporulation control protein
LJY22_14730	COG3084	Protein conserved in bacteria
LJY22_14740	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LJY22_14745	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LJY22_14750	COG0204	Acyl-transferase
LJY22_14765	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LJY22_14800	COG3978	acetolactate synthase activity
LJY22_14805	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LJY22_14810	COG0129	dihydroxy-acid dehydratase activity
LJY22_14820	COG0583	DNA-binding transcription factor activity
LJY22_14825	COG2814	Major facilitator Superfamily
LJY22_14835	COG0765	amino acid transport
LJY22_14845	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LJY22_14850	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
LJY22_14855	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LJY22_14860	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LJY22_14865	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LJY22_14870	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LJY22_14880	COG0356	it plays a direct role in the translocation of protons across the membrane
LJY22_14885	COG3312	ion transport
LJY22_14890	COG1475	DNA binding
LJY22_14895	COG1192	Involved in chromosome partitioning
LJY22_14900	COG0357	Ribosomal RNA small subunit methyltransferase G
LJY22_14905	COG0445	tRNA wobble uridine modification
LJY22_14910	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LJY22_14920	COG0706	membrane insertase activity
LJY22_14930	COG0594	ribonuclease P activity
LJY22_14940	COG1126	abc transporter atp-binding protein
LJY22_14970	COG0842	Transport permease protein
LJY22_14975	COG1131	(ABC) transporter
LJY22_14985	COG2706	6-phosphogluconolactonase activity
LJY22_14995	COG1881	PFAM PEBP family protein
LJY22_15005	COG0798	PFAM Bile acid sodium symporter
LJY22_15020	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJY22_15025	COG2213	PTS system mannitol-specific
LJY22_15030	COG1063	alcohol dehydrogenase
LJY22_15040	COG1072	(Pantothenic acid kinase))
LJY22_15045	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LJY22_15060	COG0814	amino acid
LJY22_15070	COG0840	transmembrane signaling receptor activity
LJY22_15075	COG3314	Sporulation integral membrane protein YlbJ
LJY22_15095	COG0739	heme binding
LJY22_15100	COG5001	Diguanylate cyclase
LJY22_15105	COG0583	DNA-binding transcription factor activity
LJY22_15110	COG2814	Major facilitator Superfamily
LJY22_15125	COG0697	spore germination
LJY22_15140	COG0179	Fumarylacetoacetate (FAA) hydrolase
LJY22_15155	COG2207	Transcriptional regulator
LJY22_15160	COG1280	lysine exporter protein (LysE YggA)
LJY22_15170	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LJY22_15175	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LJY22_15180	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LJY22_15185	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
LJY22_15190	COG1845	cytochrome c oxidase, subunit III
LJY22_15210	COG1612	heme a metabolic process
LJY22_15215	COG0109	protoheme IX farnesyltransferase activity
LJY22_15220	COG0545	Peptidyl-prolyl cis-trans isomerase
LJY22_15230	COG2885	chlorophyll binding
LJY22_15250	COG1278	Cold shock
LJY22_15255	COG3036	rescue of stalled ribosome
LJY22_15260	COG2199	diguanylate cyclase activity
LJY22_15280	COG1136	(ABC) transporter
LJY22_15280	COG0577	efflux transmembrane transporter activity
LJY22_15290	COG0840	transmembrane signaling receptor activity
LJY22_15295	COG0783	Belongs to the Dps family
LJY22_15305	COG2133	pyrroloquinoline quinone binding
LJY22_15310	COG1454	alcohol dehydrogenase
LJY22_15315	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
LJY22_15340	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LJY22_15345	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LJY22_15350	COG3186	Phenylalanine-4-hydroxylase
LJY22_15375	COG3530	Putative quorum-sensing-regulated virulence factor
LJY22_15415	COG1404	Belongs to the peptidase S8 family
LJY22_15440	COG0730	response to heat
LJY22_15450	COG0513	Belongs to the DEAD box helicase family
LJY22_15455	COG4628	conserved protein (DUF2132)
LJY22_15465	COG0133	tryptophan synthase activity
LJY22_15470	COG0557	exoribonuclease II activity
LJY22_15475	COG1278	Cold shock
LJY22_15485	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
LJY22_15495	COG0523	cobalamin synthesis protein
LJY22_15500	COG0513	Belongs to the DEAD box helicase family
LJY22_15520	COG2200	EAL domain
LJY22_15525	COG1119	ATPase activity
LJY22_15530	COG0840	transmembrane signaling receptor activity
LJY22_15560	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
LJY22_15565	COG0513	Belongs to the DEAD box helicase family
LJY22_15575	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LJY22_15630	COG0247	lactate metabolic process
LJY22_15630	COG0277	FAD linked oxidase domain protein
LJY22_15640	COG5413	integral membrane protein
LJY22_15650	COG1024	Enoyl-CoA hydratase
LJY22_15655	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LJY22_15660	COG1960	acyl-CoA dehydrogenase activity
LJY22_15670	COG0183	Belongs to the thiolase family
LJY22_15685	COG1024	Enoyl-CoA hydratase
LJY22_15690	COG1024	Enoyl-CoA hydratase
LJY22_15700	COG1028	Short-chain dehydrogenase reductase Sdr
LJY22_15705	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LJY22_15710	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LJY22_15715	COG1845	cytochrome c oxidase, subunit III
LJY22_15720	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LJY22_15725	COG0109	protoheme IX farnesyltransferase activity
LJY22_15735	COG1902	pentaerythritol trinitrate reductase activity
LJY22_15735	COG0446	pyridine nucleotide-disulphide oxidoreductase
LJY22_15755	COG1012	belongs to the aldehyde dehydrogenase family
LJY22_15765	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LJY22_15795	COG1126	abc transporter atp-binding protein
LJY22_15800	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJY22_15805	COG4215	(ABC) transporter
LJY22_15810	COG4160	amino acid transport
LJY22_15875	COG0443	Heat shock 70 kDa protein
LJY22_15880	COG2847	Copper chaperone PCu(A)C
LJY22_15935	COG0814	amino acid
LJY22_15945	COG0243	molybdopterin cofactor binding
LJY22_15950	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LJY22_15950	COG1648	precorrin-2 dehydrogenase activity
LJY22_15965	COG3707	response regulator
LJY22_15970	COG1116	anion transmembrane transporter activity
LJY22_15970	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LJY22_15975	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LJY22_15980	COG1116	anion transmembrane transporter activity
LJY22_15985	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LJY22_15985	COG2146	nitrite reductase [NAD(P)H] activity
LJY22_16005	COG0625	glutathione transferase activity
LJY22_16035	COG0515	serine threonine protein kinase
LJY22_16035	COG2815	serine threonine protein kinase
LJY22_16070	COG0631	protein serine/threonine phosphatase activity
LJY22_16140	COG0420	3'-5' exonuclease activity
LJY22_16145	COG0419	ATPase involved in DNA repair
LJY22_16160	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LJY22_16160	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LJY22_16165	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LJY22_16175	COG3383	formate dehydrogenase (NAD+) activity
LJY22_16185	COG0251	oxidation-reduction process
LJY22_16195	COG3040	lipid binding
LJY22_16205	COG1288	antiporter activity
LJY22_16215	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
LJY22_16230	COG2425	protein containing a von Willebrand factor type A (vWA) domain
LJY22_16245	COG0583	DNA-binding transcription factor activity
LJY22_16250	COG0277	FAD linked oxidase domain protein
LJY22_16265	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LJY22_16335	COG5001	Diguanylate cyclase
LJY22_16340	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LJY22_16345	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LJY22_16355	COG2116	formate transmembrane transporter activity
LJY22_16375	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LJY22_16410	COG3118	belongs to the thioredoxin family
LJY22_16415	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LJY22_16440	COG2271	Major facilitator Superfamily
LJY22_16445	COG3851	Histidine kinase
LJY22_16450	COG2197	response regulator
LJY22_16460	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LJY22_16465	COG0583	DNA-binding transcription factor activity
LJY22_16470	COG0243	molybdopterin cofactor binding
LJY22_16480	COG0384	phenazine biosynthesis protein PhzF
LJY22_16485	COG1794	racemase activity, acting on amino acids and derivatives
LJY22_16515	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LJY22_16530	COG1328	CTP reductase activity
LJY22_16535	COG0602	queuosine metabolic process
LJY22_16540	COG0534	Mate efflux family protein
LJY22_16545	COG2207	Transcriptional regulator
LJY22_16555	COG0189	ligase activity
LJY22_16555	COG4067	protein conserved in archaea
LJY22_16565	COG3111	PFAM Bacterial OB fold (BOF) protein
LJY22_16575	COG0725	ABC transporter, periplasmic molybdate-binding protein
LJY22_16580	COG4149	molybdate abc transporter
LJY22_16585	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
LJY22_16595	COG4251	negative regulation of phosphorylation
LJY22_16595	COG3706	GGDEF domain
LJY22_16595	COG5001	Diguanylate cyclase
LJY22_16595	COG2203	Gaf domain
LJY22_16620	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
LJY22_16625	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
LJY22_16650	COG3140	Belongs to the UPF0181 family
LJY22_16655	COG0589	response to stress
LJY22_16665	COG0583	DNA-binding transcription factor activity
LJY22_16680	COG0023	Translation Initiation Factor
LJY22_16690	COG1181	Belongs to the D-alanine--D-alanine ligase family
LJY22_16700	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LJY22_16700	COG1042	CoA-binding domain protein
LJY22_16700	COG0045	succinate-CoA ligase (ADP-forming) activity
LJY22_16705	COG0583	DNA-binding transcription factor activity
LJY22_16710	COG4771	TonB-dependent receptor
LJY22_16710	COG1629	transport
LJY22_16715	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LJY22_16720	COG5002	protein histidine kinase activity
LJY22_16720	COG3447	MASE1 domain protein
LJY22_16720	COG5001	Diguanylate cyclase
LJY22_16725	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
LJY22_16730	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
LJY22_16735	COG1984	allophanate hydrolase subunit 2
LJY22_16745	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
LJY22_16750	COG4181	ATPase activity
LJY22_16760	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LJY22_16765	COG5001	Diguanylate cyclase
LJY22_16765	COG1716	ATPase activity
LJY22_16800	COG4533	DNA binding
LJY22_16810	COG2050	protein possibly involved in aromatic compounds catabolism
LJY22_16825	COG2067	long-chain fatty acid transport protein
LJY22_16830	COG2267	carboxylic ester hydrolase activity
LJY22_16855	COG0737	Belongs to the 5'-nucleotidase family
LJY22_16860	COG3593	DNA synthesis involved in DNA repair
LJY22_16870	COG0583	DNA-binding transcription factor activity
LJY22_16875	COG2116	formate transmembrane transporter activity
LJY22_16880	COG2353	YceI-like domain
LJY22_16885	COG3038	cytochrome b561
LJY22_16900	COG4943	cyclic-guanylate-specific phosphodiesterase activity
LJY22_16905	COG0513	Belongs to the DEAD box helicase family
LJY22_16915	COG0840	transmembrane signaling receptor activity
LJY22_16920	COG0546	phosphoglycolate phosphatase activity
LJY22_16935	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LJY22_16940	COG2759	Belongs to the formate--tetrahydrofolate ligase family
LJY22_16945	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LJY22_16955	COG2207	Transcriptional regulator
LJY22_16960	COG1979	alcohol dehydrogenase
LJY22_16970	COG1126	abc transporter atp-binding protein
LJY22_16975	COG0765	amino acid transport
LJY22_16980	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJY22_16985	COG0765	amino acid transport
LJY22_16990	COG2203	Gaf domain
LJY22_16990	COG2200	EAL domain
LJY22_16990	COG2199	diguanylate cyclase activity
LJY22_17005	COG1609	Transcriptional regulator
LJY22_17010	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJY22_17010	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJY22_17015	COG1105	Belongs to the carbohydrate kinase PfkB family
LJY22_17020	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LJY22_17020	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LJY22_17020	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
LJY22_17040	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJY22_17050	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LJY22_17060	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
LJY22_17065	COG0509	glycine decarboxylation via glycine cleavage system
LJY22_17070	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LJY22_17070	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LJY22_17075	COG0346	lactoylglutathione lyase activity
LJY22_17080	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LJY22_17105	COG2176	DNA-directed DNA polymerase activity
LJY22_17145	COG0242	peptide deformylase activity
LJY22_17175	COG2239	Acts as a magnesium transporter
LJY22_17195	COG0346	lactoylglutathione lyase activity
LJY22_17200	COG1902	pentaerythritol trinitrate reductase activity
LJY22_17220	COG5642	Protein of unknown function (DUF2384)
LJY22_17225	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
LJY22_17285	COG2962	Rard protein
LJY22_17300	COG0784	Response regulator, receiver
LJY22_17300	COG0835	chemotaxis
LJY22_17305	COG2197	response regulator
LJY22_17315	COG3706	GGDEF domain
LJY22_17325	COG5001	Diguanylate cyclase
LJY22_17325	COG3300	MHYT domain
LJY22_17330	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
LJY22_17350	COG0456	acetyltransferase
LJY22_17350	COG1214	PFAM Peptidase M22, glycoprotease
LJY22_17360	COG3069	C4-dicarboxylate transmembrane transporter activity
LJY22_17365	COG1704	LemA family
LJY22_17370	COG0501	Belongs to the peptidase M48B family
LJY22_17395	COG3111	PFAM Bacterial OB fold (BOF) protein
LJY22_17400	COG1597	lipid kinase activity
LJY22_17405	COG0583	DNA-binding transcription factor activity
LJY22_17410	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LJY22_17410	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LJY22_17440	COG0714	Associated with various cellular activities
LJY22_17445	COG0641	radical SAM
LJY22_17450	COG3119	arylsulfatase activity
LJY22_17460	COG3119	arylsulfatase activity
LJY22_17480	COG0784	Response regulator, receiver
LJY22_17480	COG2198	Histidine kinase
LJY22_17480	COG2205	protein histidine kinase activity
LJY22_17485	COG1879	ABC-type sugar transport system periplasmic component
LJY22_17490	COG1803	Methylglyoxal synthase
LJY22_17495	COG0210	DNA helicase
LJY22_17500	COG1289	transmembrane transporter activity
LJY22_17530	COG4771	TonB-dependent receptor
LJY22_17530	COG1629	transport
LJY22_17535	COG2207	Transcriptional regulator
LJY22_17540	COG0789	Transcriptional regulator
LJY22_17545	COG4604	ABC transporter, ATP-binding protein
LJY22_17550	COG4605	iron ion homeostasis
LJY22_17555	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LJY22_17560	COG4607	ABC-type enterochelin transport system periplasmic component
LJY22_17570	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
LJY22_17580	COG1609	Transcriptional regulator
LJY22_17585	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LJY22_17590	COG1879	ABC-type sugar transport system periplasmic component
LJY22_17595	COG1172	Belongs to the binding-protein-dependent transport system permease family
LJY22_17600	COG1129	ABC transporter
LJY22_17605	COG1869	D-ribose catabolic process
LJY22_17610	COG5001	Diguanylate cyclase
LJY22_17655	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LJY22_17665	COG0784	Response regulator, receiver
LJY22_17665	COG2205	protein histidine kinase activity
LJY22_17675	COG3300	MHYT domain
LJY22_17675	COG5001	Diguanylate cyclase
LJY22_17685	COG0330	HflC and HflK could
LJY22_17700	COG0517	IMP dehydrogenase activity
LJY22_17700	COG4175	Glycine betaine
LJY22_17705	COG4176	ABC-type proline glycine betaine transport system permease component
LJY22_17720	COG1012	belongs to the aldehyde dehydrogenase family
LJY22_17725	COG1309	transcriptional regulator
LJY22_17735	COG1028	Short-chain dehydrogenase reductase Sdr
LJY22_17750	COG1024	Enoyl-CoA hydratase
LJY22_17755	COG1960	acyl-CoA dehydrogenase activity
LJY22_17765	COG0183	Belongs to the thiolase family
LJY22_17775	COG1960	acyl-CoA dehydrogenase activity
LJY22_17780	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LJY22_17790	COG4770	biotin carboxylase activity
LJY22_17800	COG2205	protein histidine kinase activity
LJY22_17800	COG3437	response regulator, receiver
LJY22_17800	COG3850	Histidine kinase
LJY22_17800	COG4999	Histidine kinase
LJY22_17820	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LJY22_17825	COG1271	oxidase subunit
LJY22_17830	COG1294	oxidase, subunit
LJY22_17840	COG0384	phenazine biosynthesis protein PhzF
LJY22_17850	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LJY22_17860	COG3527	Alpha-acetolactate decarboxylase
LJY22_17870	COG1028	Short-chain dehydrogenase reductase Sdr
LJY22_17875	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LJY22_17935	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LJY22_17940	COG1320	monovalent cation:proton antiporter activity
LJY22_17945	COG2212	antiporter activity
LJY22_17950	COG1863	multisubunit Na H antiporter MnhE subunit
LJY22_17955	COG0651	ATP synthesis coupled electron transport
LJY22_17960	COG1006	Multisubunit Na H antiporter MnhC subunit
LJY22_17965	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LJY22_17965	COG2111	Na H antiporter
LJY22_17975	COG0589	response to stress
LJY22_17980	COG4221	oxidoreductase activity
LJY22_17985	COG0583	DNA-binding transcription factor activity
LJY22_17995	COG2814	Major facilitator Superfamily
LJY22_18020	COG3179	chitinase
LJY22_18065	COG1522	sequence-specific DNA binding
LJY22_18100	COG0515	serine threonine protein kinase
LJY22_18125	COG3501	Rhs element vgr protein
LJY22_18165	COG0739	heme binding
LJY22_18175	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
LJY22_18175	COG0674	pyruvate-flavodoxin oxidoreductase activity
LJY22_18180	COG1013	pyruvate-flavodoxin oxidoreductase activity
LJY22_18195	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LJY22_18240	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
LJY22_18250	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LJY22_18250	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LJY22_18265	COG4989	oxidoreductase activity
LJY22_18280	COG0038	chloride channel
LJY22_18290	COG1914	H( )-stimulated, divalent metal cation uptake system
LJY22_18305	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LJY22_18325	COG2897	thiosulfate sulfurtransferase activity
LJY22_18345	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LJY22_18350	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LJY22_18355	COG0840	transmembrane signaling receptor activity
LJY22_18360	COG2814	Major facilitator Superfamily
LJY22_18365	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LJY22_18375	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LJY22_18385	COG0840	transmembrane signaling receptor activity
LJY22_18405	COG2195	Cleaves the N-terminal amino acid of tripeptides
LJY22_18420	COG2197	response regulator
LJY22_18425	COG3850	Histidine kinase
LJY22_18430	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LJY22_18440	COG0243	molybdopterin cofactor binding
LJY22_18450	COG3005	denitrification pathway
LJY22_18460	COG3243	poly(R)-hydroxyalkanoic acid synthase
LJY22_18470	COG0183	Belongs to the thiolase family
LJY22_18480	COG1280	lysine exporter protein (LysE YggA)
LJY22_18490	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LJY22_18495	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LJY22_18550	COG0784	Response regulator, receiver
LJY22_18550	COG2205	protein histidine kinase activity
LJY22_18555	COG1879	ABC-type sugar transport system periplasmic component
LJY22_18560	COG2827	Endonuclease containing a URI domain
LJY22_18565	COG3132	Protein of unknown function, DUF480
LJY22_18585	COG0784	Response regulator, receiver
LJY22_18585	COG2205	protein histidine kinase activity
LJY22_18585	COG5002	protein histidine kinase activity
LJY22_18605	COG0583	DNA-binding transcription factor activity
LJY22_18615	COG0531	amino acid
LJY22_18630	COG2205	protein histidine kinase activity
LJY22_18635	COG0745	RESPONSE REGULATOR receiver
LJY22_18660	COG1566	PFAM secretion protein HlyD family protein
LJY22_18665	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LJY22_18670	COG2239	Acts as a magnesium transporter
LJY22_18675	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
LJY22_18680	COG0402	S-adenosylhomocysteine deaminase activity
LJY22_18685	COG1418	mRNA catabolic process
LJY22_18695	COG2814	Major facilitator Superfamily
LJY22_18705	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LJY22_18725	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LJY22_18740	COG0745	RESPONSE REGULATOR receiver
LJY22_18745	COG2205	protein histidine kinase activity
LJY22_18755	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LJY22_18760	COG2194	sulfuric ester hydrolase activity
LJY22_18780	COG4667	esterase of the alpha-beta hydrolase superfamily
LJY22_18785	COG1741	Belongs to the pirin family
LJY22_18790	COG1278	Cold shock
LJY22_18805	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LJY22_18810	COG0678	peroxiredoxin activity
LJY22_18810	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LJY22_18820	COG1686	Belongs to the peptidase S11 family
LJY22_18825	COG0625	glutathione transferase activity
LJY22_18830	COG1621	beta-fructofuranosidase activity
LJY22_18835	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LJY22_18840	COG1263	PTS System
LJY22_18840	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LJY22_18860	COG1028	Short-chain dehydrogenase reductase Sdr
LJY22_18875	COG3746	phosphate-selective porin O and P
LJY22_18895	COG2207	Transcriptional regulator
LJY22_18895	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LJY22_18900	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LJY22_18935	COG0513	Belongs to the DEAD box helicase family
LJY22_18945	COG0583	DNA-binding transcription factor activity
LJY22_18960	COG1902	pentaerythritol trinitrate reductase activity
LJY22_18965	COG1063	alcohol dehydrogenase
LJY22_18975	COG1028	Short-chain dehydrogenase reductase Sdr
LJY22_18980	COG2207	Transcriptional regulator
LJY22_18985	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LJY22_18990	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LJY22_18995	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LJY22_19000	COG0006	proline dipeptidase activity
LJY22_19005	COG3608	succinylglutamate desuccinylase aspartoacylase
LJY22_19010	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LJY22_19015	COG1522	sequence-specific DNA binding
LJY22_19020	COG1012	belongs to the aldehyde dehydrogenase family
LJY22_19025	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LJY22_19030	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LJY22_19035	COG2423	ornithine cyclodeaminase activity
LJY22_19045	COG3122	Protein conserved in bacteria
LJY22_19050	COG1280	lysine exporter protein (LysE YggA)
LJY22_19060	COG0583	DNA-binding transcription factor activity
LJY22_19065	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LJY22_19070	COG0252	asparaginase activity
LJY22_19075	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
LJY22_19095	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LJY22_19110	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJY22_19135	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LJY22_19165	COG3842	ATPase activity
LJY22_19190	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LJY22_19225	COG0583	DNA-binding transcription factor activity
LJY22_19235	COG4948	Mandelate Racemase Muconate Lactonizing
LJY22_19265	COG1342	Belongs to the UPF0251 family
LJY22_19270	COG4176	ABC-type proline glycine betaine transport system permease component
LJY22_19275	COG3448	diguanylate cyclase activity
LJY22_19275	COG4175	Glycine betaine
LJY22_19280	COG3015	lipoprotein NlpE involved in copper resistance
LJY22_19285	COG3713	MltA-interacting MipA family protein
LJY22_19300	COG0583	DNA-binding transcription factor activity
LJY22_19325	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
LJY22_19335	COG1335	isochorismatase
LJY22_19345	COG1349	DNA-binding transcription factor activity
LJY22_19350	COG0346	lactoylglutathione lyase activity
LJY22_19355	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LJY22_19355	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LJY22_19365	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LJY22_19370	COG2070	2-Nitropropane dioxygenase
LJY22_19375	COG0531	amino acid
LJY22_19380	COG4302	ethanolamine ammonia-lyase activity
LJY22_19385	COG4303	Ethanolamine ammonia lyase large subunit
LJY22_19395	COG1309	transcriptional regulator
LJY22_19425	COG0459	protein refolding
LJY22_19430	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
LJY22_19435	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LJY22_19450	COG1304	FMN binding
LJY22_19470	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LJY22_19475	COG1256	bacterial-type flagellum assembly
LJY22_19475	COG4786	Flagellar basal body rod
LJY22_19485	COG1706	bacterial-type flagellum-dependent cell motility
LJY22_19490	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
LJY22_19495	COG4786	Flagellar basal body rod
LJY22_19500	COG4787	bacterial-type flagellum-dependent cell motility
LJY22_19505	COG1749	Flagellar hook protein flgE
LJY22_19510	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
LJY22_19515	COG1558	bacterial-type flagellum-dependent cell motility
LJY22_19520	COG1815	bacterial-type flagellum-dependent cell motility
LJY22_19540	COG0741	lytic transglycosylase activity
LJY22_19545	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LJY22_19565	COG1760	l-serine dehydratase
LJY22_19570	COG3104	oligopeptide transport
LJY22_19590	COG0583	DNA-binding transcription factor activity
LJY22_19600	COG2866	Carboxypeptidase
LJY22_19605	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LJY22_19615	COG2990	Protein conserved in bacteria
LJY22_19640	COG3842	ATPase activity
LJY22_19645	COG1840	ABC-type Fe3 transport system, periplasmic component
LJY22_19655	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LJY22_19660	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LJY22_19665	COG1609	Transcriptional regulator
LJY22_19695	COG3240	lipase activity
LJY22_19700	COG2067	long-chain fatty acid transport protein
LJY22_19705	COG3338	carbonate dehydratase activity
LJY22_19710	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
LJY22_19725	COG1011	Hydrolase
LJY22_19760	COG0110	maltose O-acetyltransferase activity
LJY22_19765	COG1765	OsmC-like protein
LJY22_19770	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LJY22_19770	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LJY22_19785	COG3046	protein related to deoxyribodipyrimidine photolyase
LJY22_19790	COG0415	Belongs to the DNA photolyase family
LJY22_19795	COG3706	GGDEF domain
LJY22_19810	COG3706	GGDEF domain
LJY22_19825	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LJY22_19845	COG3033	Beta-eliminating lyase
LJY22_19855	COG1271	oxidase subunit
LJY22_19860	COG1294	oxidase, subunit
LJY22_19875	COG0579	oxidoreductase
LJY22_19895	COG3706	GGDEF domain
LJY22_19900	COG2204	response regulator
LJY22_19905	COG4191	Histidine kinase
LJY22_19940	COG0583	DNA-binding transcription factor activity
LJY22_19945	COG0189	ligase activity
LJY22_19950	COG4067	protein conserved in archaea
LJY22_19950	COG0189	ligase activity
LJY22_19960	COG1166	arginine decarboxylase activity
LJY22_19965	COG0010	Belongs to the arginase family
LJY22_19970	COG2814	Major facilitator Superfamily
LJY22_19975	COG1770	oligopeptidase
LJY22_19990	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LJY22_19995	COG1121	(ABC) transporter
LJY22_20000	COG0803	Belongs to the bacterial solute-binding protein 9 family
LJY22_20045	COG0848	biopolymer transport protein
LJY22_20050	COG0811	peptide transport
LJY22_20055	COG0811	peptide transport
LJY22_20075	COG0745	RESPONSE REGULATOR receiver
LJY22_20080	COG0039	L-malate dehydrogenase activity
LJY22_20085	COG0584	glycerophosphoryl diester phosphodiesterase
LJY22_20095	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LJY22_20155	COG1901	pseudouridine methyltransferase
LJY22_20160	COG0312	modulator of DNA gyrase
LJY22_20165	COG0312	modulator of DNA gyrase
LJY22_20170	COG0351	phosphomethylpyrimidine kinase
LJY22_20175	COG1116	anion transmembrane transporter activity
LJY22_20180	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LJY22_20185	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LJY22_20190	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LJY22_20195	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
LJY22_20200	COG0352	thiamine-phosphate diphosphorylase activity
LJY22_20210	COG0243	molybdopterin cofactor binding
LJY22_20215	COG3005	denitrification pathway
LJY22_20220	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LJY22_20225	COG1028	Short-chain dehydrogenase reductase Sdr
LJY22_20240	COG0456	acetyltransferase
LJY22_20260	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LJY22_20265	COG1929	Belongs to the glycerate kinase type-1 family
LJY22_20270	COG2610	gluconate transmembrane transporter activity
LJY22_20275	COG3835	regulator
LJY22_20300	COG0546	phosphoglycolate phosphatase activity
LJY22_20315	COG0583	DNA-binding transcription factor activity
LJY22_20330	COG0641	radical SAM
LJY22_20335	COG0583	DNA-binding transcription factor activity
LJY22_20345	COG0583	DNA-binding transcription factor activity
LJY22_20355	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
LJY22_20360	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
LJY22_20360	COG3408	Glycogen debranching enzyme
LJY22_20390	COG3047	cAMP biosynthetic process
LJY22_20395	COG1357	PFAM Pentapeptide repeats (8 copies)
LJY22_20430	COG2375	cellular response to nickel ion
LJY22_20435	COG0583	DNA-binding transcription factor activity
LJY22_20440	COG2162	N-hydroxyarylamine O-acetyltransferase activity
LJY22_20445	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
LJY22_20460	COG2199	diguanylate cyclase activity
LJY22_20470	COG0561	phosphatase activity
LJY22_20475	COG0583	DNA-binding transcription factor activity
LJY22_20490	COG0564	pseudouridine synthase activity
LJY22_20495	COG0534	Mate efflux family protein
LJY22_20510	COG3123	guanosine phosphorylase activity
LJY22_20525	COG0596	Alpha beta hydrolase
LJY22_20550	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LJY22_20560	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LJY22_20565	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
LJY22_20575	COG2259	Doxx family
LJY22_20580	COG1741	Belongs to the pirin family
LJY22_20600	COG0363	glucosamine-6-phosphate deaminase activity
LJY22_20610	COG0786	glutamate:sodium symporter activity
LJY22_20615	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LJY22_20620	COG1131	(ABC) transporter
LJY22_20630	COG0786	glutamate:sodium symporter activity
LJY22_20650	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LJY22_20660	COG3279	Response regulator of the LytR AlgR family
LJY22_20665	COG3275	phosphorelay sensor kinase activity
LJY22_20695	COG0772	Belongs to the SEDS family
LJY22_20720	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
LJY22_20720	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LJY22_20730	COG0444	Belongs to the ABC transporter superfamily
LJY22_20735	COG4608	Belongs to the ABC transporter superfamily
LJY22_20760	COG1444	tRNA N-acetyltransferase activity
LJY22_20785	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
LJY22_20790	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LJY22_20790	COG1263	PTS System
LJY22_20795	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
LJY22_20810	COG4166	transmembrane transport
LJY22_20860	COG0259	pyridoxamine-phosphate oxidase activity
LJY22_20885	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LJY22_20920	COG1132	(ABC) transporter
LJY22_20930	COG2207	Transcriptional regulator
LJY22_20955	COG2258	MOSC domain
LJY22_20975	COG1595	DNA-templated transcription, initiation
LJY22_21000	COG3634	alkyl hydroperoxide reductase activity
LJY22_21010	COG1846	Transcriptional regulator
LJY22_21015	COG1764	response to oxidative stress
LJY22_21030	COG0577	efflux transmembrane transporter activity
LJY22_21035	COG1136	(ABC) transporter
LJY22_21055	COG2160	L-arabinose isomerase activity
LJY22_21065	COG1069	ribulokinase activity
LJY22_21070	COG1879	ABC-type sugar transport system periplasmic component
LJY22_21075	COG1129	ABC transporter
LJY22_21080	COG1172	Belongs to the binding-protein-dependent transport system permease family
LJY22_21085	COG0826	peptidase U32
LJY22_21110	COG1653	transport
LJY22_21115	COG0019	diaminopimelate decarboxylase activity
LJY22_21120	COG4264	IucA IucC family
LJY22_21145	COG4772	TonB-dependent receptor
LJY22_21150	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
LJY22_21155	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LJY22_21160	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LJY22_21165	COG1120	ATPase activity
LJY22_21170	COG0840	transmembrane signaling receptor activity
LJY22_21175	COG0612	Peptidase, M16
LJY22_21185	COG0739	heme binding
LJY22_21225	COG4580	involved in the transport of maltose and maltodextrins
LJY22_21245	COG2356	endonuclease I
LJY22_21265	COG1982	Orn Lys Arg decarboxylase major
LJY22_21270	COG0531	amino acid
LJY22_21280	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
LJY22_21285	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
LJY22_21290	COG1162	GTPase activity
LJY22_21295	COG1263	PTS System
LJY22_21295	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LJY22_21300	COG1999	signal sequence binding
LJY22_21315	COG2909	trisaccharide binding
LJY22_21320	COG0058	SHG alpha-glucan phosphorylase activity
LJY22_21325	COG1640	4-alpha-glucanotransferase
LJY22_21330	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LJY22_21335	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LJY22_21340	COG0366	Alpha amylase catalytic
LJY22_21355	COG3366	ferrous iron transmembrane transporter activity
LJY22_21360	COG0700	Nucleoside recognition
LJY22_21365	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LJY22_21370	COG3339	Conserved Protein
LJY22_21395	COG1301	dicarboxylic acid transport
LJY22_21415	COG1596	polysaccharide export
LJY22_21430	COG2095	MarC family integral membrane protein
LJY22_21435	COG4667	esterase of the alpha-beta hydrolase superfamily
LJY22_21440	COG3397	chitin binding
LJY22_21445	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
LJY22_21450	COG0415	Belongs to the DNA photolyase family
LJY22_21460	COG1054	Belongs to the UPF0176 family
LJY22_21475	COG1686	Belongs to the peptidase S11 family
LJY22_21500	COG0583	DNA-binding transcription factor activity
LJY22_21505	COG4628	conserved protein (DUF2132)
LJY22_21520	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
LJY22_21525	COG0628	permease
LJY22_21535	COG1566	PFAM secretion protein HlyD family protein
LJY22_21565	COG2814	Major facilitator Superfamily
LJY22_21580	COG0454	-acetyltransferase
LJY22_21590	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LJY22_21595	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LJY22_21600	COG1882	Formate acetyltransferase
LJY22_21650	COG1360	Flagellar Motor Protein
LJY22_21655	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
LJY22_21660	COG1191	sigma factor activity
LJY22_21665	COG1580	Controls the rotational direction of flagella during chemotaxis
LJY22_21680	COG1516	flagellar protein fliS
LJY22_21685	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
LJY22_21700	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LJY22_21715	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LJY22_21725	COG1987	bacterial-type flagellum assembly
LJY22_21765	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LJY22_21820	COG0346	lactoylglutathione lyase activity
LJY22_21845	COG0745	RESPONSE REGULATOR receiver
LJY22_21865	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJY22_21870	COG3300	MHYT domain
LJY22_21870	COG5001	Diguanylate cyclase
LJY22_21875	COG0156	8-amino-7-oxononanoate synthase activity
LJY22_21880	COG1063	alcohol dehydrogenase
LJY22_21915	COG0668	transmembrane transport
LJY22_21925	COG1304	FMN binding
LJY22_21930	COG1620	l-lactate permease
LJY22_21935	COG0583	DNA-binding transcription factor activity
LJY22_21940	COG1505	serine-type exopeptidase activity
LJY22_21945	COG4172	Belongs to the ABC transporter superfamily
LJY22_21955	COG1067	ATP-dependent peptidase activity
LJY22_21960	COG0840	transmembrane signaling receptor activity
LJY22_21965	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
LJY22_21985	COG1247	-acetyltransferase
LJY22_21990	COG0437	4 iron, 4 sulfur cluster binding
LJY22_21995	COG0348	domain, Protein
LJY22_22015	COG1122	ATPase activity
LJY22_22020	COG4720	Psort location CytoplasmicMembrane, score
LJY22_22025	COG1566	PFAM secretion protein HlyD family protein
LJY22_22050	COG0813	purine-nucleoside phosphorylase activity
LJY22_22055	COG3272	Protein of unknown function (DUF1722)
LJY22_22060	COG0789	Transcriptional regulator
LJY22_22065	COG0415	Belongs to the DNA photolyase family
LJY22_22070	COG1388	LysM domain
LJY22_22070	COG1376	ErfK ybiS ycfS ynhG family protein
LJY22_22080	COG0513	Belongs to the DEAD box helicase family
LJY22_22085	COG1770	oligopeptidase
LJY22_22090	COG4771	TonB-dependent receptor
LJY22_22110	COG0840	transmembrane signaling receptor activity
LJY22_22120	COG0573	inorganic phosphate transmembrane transporter activity
LJY22_22125	COG0581	inorganic phosphate transmembrane transporter activity
LJY22_22130	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LJY22_22145	COG2304	oxidoreductase activity
LJY22_22150	COG2304	oxidoreductase activity
LJY22_22165	COG0714	Associated with various cellular activities
LJY22_22170	COG0840	transmembrane signaling receptor activity
LJY22_22180	COG2197	response regulator
LJY22_22215	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
LJY22_22220	COG1120	ATPase activity
LJY22_22225	COG4774	siderophore transport
LJY22_22230	COG1132	(ABC) transporter
LJY22_22235	COG2205	protein histidine kinase activity
LJY22_22245	COG0569	domain protein
LJY22_22250	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LJY22_22255	COG0583	DNA-binding transcription factor activity
LJY22_22270	COG1012	belongs to the aldehyde dehydrogenase family
LJY22_22280	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LJY22_22285	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LJY22_22295	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LJY22_22300	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
LJY22_22305	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LJY22_22335	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJY22_22335	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LJY22_22335	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LJY22_22340	COG2207	Transcriptional regulator
LJY22_22350	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LJY22_22355	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LJY22_22360	COG2084	Dehydrogenase
LJY22_22365	COG0753	catalase activity
LJY22_22375	COG2130	NADP-dependent
LJY22_22380	COG1309	transcriptional regulator
LJY22_22385	COG3097	Belongs to the UPF0267 family
LJY22_22425	COG3206	protein involved in exopolysaccharide biosynthesis
LJY22_22425	COG0489	protein tyrosine kinase activity
LJY22_22440	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LJY22_22445	COG3842	ATPase activity
LJY22_22455	COG1175	transmembrane transport
LJY22_22460	COG3833	ABC-type maltose transport systems, permease component
LJY22_22490	COG2354	Protein conserved in bacteria
LJY22_22495	COG0418	dihydroorotase activity
LJY22_22500	COG0401	homolog of Blt101
LJY22_22505	COG0633	Ferredoxin
LJY22_22505	COG3217	Mosc domain protein beta barrel domain protein
LJY22_22505	COG0633	Ferredoxin
LJY22_22505	COG3217	Mosc domain protein beta barrel domain protein
LJY22_22510	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LJY22_22515	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LJY22_22555	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
LJY22_22560	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LJY22_22570	COG0848	biopolymer transport protein
LJY22_22575	COG0811	peptide transport
LJY22_22580	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
LJY22_22590	COG3721	Heme iron utilization protein
LJY22_22595	COG0748	coenzyme F420 binding
LJY22_22605	COG0784	Response regulator, receiver
LJY22_22605	COG0835	chemotaxis
LJY22_22610	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LJY22_22645	COG0583	DNA-binding transcription factor activity
LJY22_22650	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
LJY22_22660	COG4934	collagen metabolic process
LJY22_22675	COG0789	Transcriptional regulator
LJY22_22680	COG0366	Alpha amylase catalytic
LJY22_22700	COG2249	NAD(P)H dehydrogenase (quinone) activity
LJY22_22705	COG0589	response to stress
LJY22_22710	COG0488	(ABC) transporter
LJY22_22715	COG1505	serine-type exopeptidase activity
LJY22_22725	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJY22_22735	COG2067	long-chain fatty acid transport protein
LJY22_22745	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LJY22_22775	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LJY22_23325	COG0358	DNA primase activity
LJY22_23495	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LJY22_23640	COG2916	Histone family protein nucleoid-structuring protein H-NS
LJY22_23860	COG0330	HflC and HflK could
LJY22_23865	COG0330	HflC and HflK could
LJY22_23905	COG5001	Diguanylate cyclase
LJY22_23905	COG2203	Gaf domain
LJY22_23905	COG3706	GGDEF domain
LJY22_23905	COG4251	negative regulation of phosphorylation
LJY22_24015	COG0358	DNA primase activity
LJY22_24100	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJY22_24235	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LJY22_24420	COG0517	IMP dehydrogenase activity
LJY22_24425	COG4974	Belongs to the 'phage' integrase family
LJY22_24515	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LJY22_24990	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB