locus-tag class description JOS67_00010 PF00884 Sulfatase JOS67_00015 PF13186 Iron-sulfur cluster-binding domain JOS67_00015 PF04055 Radical SAM superfamily JOS67_00020 PF09092 Lyase, N terminal JOS67_00020 PF09093 Lyase, catalytic JOS67_00020 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain JOS67_00020 PF02278 Polysaccharide lyase family 8, super-sandwich domain JOS67_00025 PF09092 Lyase, N terminal JOS67_00025 PF09093 Lyase, catalytic JOS67_00025 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain JOS67_00025 PF02278 Polysaccharide lyase family 8, super-sandwich domain JOS67_00030 PF02661 Fic/DOC family JOS67_00040 PF07470 Glycosyl Hydrolase Family 88 JOS67_00050 PF04962 KduI/IolB family JOS67_00055 PF01979 Amidohydrolase family JOS67_00065 PF03613 PTS system mannose/fructose/sorbose family IID component JOS67_00070 PF03609 PTS system sorbose-specific iic component JOS67_00075 PF03830 PTS system sorbose subfamily IIB component JOS67_00085 PF01548 Transposase JOS67_00085 PF02371 Transposase IS116/IS110/IS902 family JOS67_00090 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JOS67_00095 PF02195 ParB-like nuclease domain JOS67_00095 PF08775 ParB family JOS67_00100 PF13614 AAA domain JOS67_00125 PF02195 ParB-like nuclease domain JOS67_00125 PF08775 ParB family JOS67_00145 PF01614 Bacterial transcriptional regulator JOS67_00145 PF09339 IclR helix-turn-helix domain JOS67_00150 PF03401 Tripartite tricarboxylate transporter family receptor JOS67_00175 PF02743 Cache domain JOS67_00175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_00175 PF00672 HAMP domain JOS67_00185 PF02743 Cache domain JOS67_00185 PF00672 HAMP domain JOS67_00185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_00190 PF08220 DeoR-like helix-turn-helix domain JOS67_00190 PF00455 DeoR C terminal sensor domain JOS67_00195 PF00672 HAMP domain JOS67_00195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_00200 PF00884 Sulfatase JOS67_00210 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain JOS67_00210 PF09093 Lyase, catalytic JOS67_00210 PF09092 Lyase, N terminal JOS67_00210 PF02278 Polysaccharide lyase family 8, super-sandwich domain JOS67_00215 PF02278 Polysaccharide lyase family 8, super-sandwich domain JOS67_00215 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain JOS67_00215 PF09092 Lyase, N terminal JOS67_00215 PF09093 Lyase, catalytic JOS67_00220 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JOS67_00225 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JOS67_00230 PF03575 Peptidase family S51 JOS67_00235 PF01546 Peptidase family M20/M25/M40 JOS67_00235 PF07687 Peptidase dimerisation domain JOS67_00240 PF03606 C4-dicarboxylate anaerobic carrier JOS67_00265 PF00884 Sulfatase JOS67_00275 PF08013 Tagatose 6 phosphate kinase JOS67_00280 PF01380 SIS domain JOS67_00285 PF03830 PTS system sorbose subfamily IIB component JOS67_00290 PF03609 PTS system sorbose-specific iic component JOS67_00295 PF03613 PTS system mannose/fructose/sorbose family IID component JOS67_00305 PF01979 Amidohydrolase family JOS67_00310 PF04962 KduI/IolB family JOS67_00320 PF07470 Glycosyl Hydrolase Family 88 JOS67_00325 PF01928 CYTH domain JOS67_00345 PF13358 DDE superfamily endonuclease JOS67_00360 PF01609 Transposase DDE domain JOS67_00360 PF13808 DDE_Tnp_1-associated JOS67_00405 PF13411 MerR HTH family regulatory protein JOS67_00420 PF05840 Bacteriophage replication gene A protein (GPA) JOS67_00450 PF00263 Bacterial type II and III secretion system protein JOS67_00450 PF03958 Bacterial type II/III secretion system short domain JOS67_00470 PF01797 Transposase IS200 like JOS67_00475 PF13358 DDE superfamily endonuclease JOS67_00490 PF01610 Transposase JOS67_00490 PF13542 Helix-turn-helix domain of transposase family ISL3 JOS67_00490 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JOS67_00500 PF01081 KDPG and KHG aldolase JOS67_00505 PF00294 pfkB family carbohydrate kinase JOS67_00510 PF01116 Fructose-bisphosphate aldolase class-II JOS67_00515 PF00308 Bacterial dnaA protein JOS67_00515 PF08299 Bacterial dnaA protein helix-turn-helix JOS67_00515 PF11638 DnaA N-terminal domain JOS67_00520 PF02768 DNA polymerase III beta subunit, C-terminal domain JOS67_00520 PF02767 DNA polymerase III beta subunit, central domain JOS67_00520 PF00712 DNA polymerase III beta subunit, N-terminal domain JOS67_00525 PF02463 RecF/RecN/SMC N terminal domain JOS67_00530 PF00986 DNA gyrase B subunit, carboxyl terminus JOS67_00530 PF00204 DNA gyrase B JOS67_00530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_00530 PF01751 Toprim domain JOS67_00530 PF18053 DNA gyrase B subunit insert domain JOS67_00540 PF00011 Hsp20/alpha crystallin family JOS67_00545 PF00155 Aminotransferase class I and II JOS67_00550 PF00128 Alpha amylase, catalytic domain JOS67_00555 PF02092 Glycyl-tRNA synthetase beta subunit JOS67_00555 PF05746 DALR anticodon binding domain JOS67_00560 PF02091 Glycyl-tRNA synthetase alpha subunit JOS67_00570 PF01169 Uncharacterized protein family UPF0016 JOS67_00580 PF01206 Sulfurtransferase TusA JOS67_00590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_00590 PF03466 LysR substrate binding domain JOS67_00595 PF00107 Zinc-binding dehydrogenase JOS67_00595 PF08240 Alcohol dehydrogenase GroES-like domain JOS67_00600 PF02803 Thiolase, C-terminal domain JOS67_00600 PF00108 Thiolase, N-terminal domain JOS67_00605 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JOS67_00605 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JOS67_00605 PF00378 Enoyl-CoA hydratase/isomerase JOS67_00610 PF09186 Domain of unknown function (DUF1949) JOS67_00610 PF01205 Uncharacterized protein family UPF0029 JOS67_00615 PF02386 Cation transport protein JOS67_00620 PF12724 Flavodoxin domain JOS67_00670 PF07732 Multicopper oxidase JOS67_00670 PF00394 Multicopper oxidase JOS67_00670 PF07731 Multicopper oxidase JOS67_00675 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JOS67_00680 PF01964 Radical SAM ThiC family JOS67_00680 PF13667 ThiC-associated domain JOS67_00685 PF02581 Thiamine monophosphate synthase JOS67_00690 PF00899 ThiF family JOS67_00700 PF05690 Thiazole biosynthesis protein ThiG JOS67_00705 PF06968 Biotin and Thiamin Synthesis associated domain JOS67_00705 PF04055 Radical SAM superfamily JOS67_00710 PF00557 Metallopeptidase family M24 JOS67_00710 PF01321 Creatinase/Prolidase N-terminal domain JOS67_00710 PF00557 Metallopeptidase family M24 JOS67_00710 PF01321 Creatinase/Prolidase N-terminal domain JOS67_00715 PF03466 LysR substrate binding domain JOS67_00715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_00720 PF07690 Major Facilitator Superfamily JOS67_00740 PF05114 Protein of unknown function (DUF692) JOS67_00750 PF13361 UvrD-like helicase C-terminal domain JOS67_00750 PF00580 UvrD/REP helicase N-terminal domain JOS67_00760 PF01810 LysE type translocator JOS67_00770 PF00892 EamA-like transporter family JOS67_00775 PF16124 RecQ zinc-binding JOS67_00775 PF00570 HRDC domain JOS67_00775 PF00271 Helicase conserved C-terminal domain JOS67_00775 PF00270 DEAD/DEAH box helicase JOS67_00775 PF09382 RQC domain JOS67_00785 PF02592 Putative vitamin uptake transporter JOS67_00790 PF02541 Ppx/GppA phosphatase family JOS67_00795 PF00270 DEAD/DEAH box helicase JOS67_00795 PF00271 Helicase conserved C-terminal domain JOS67_00800 PF00085 Thioredoxin JOS67_00805 PF07497 Rho termination factor, RNA-binding domain JOS67_00805 PF07498 Rho termination factor, N-terminal domain JOS67_00805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOS67_00815 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JOS67_00820 PF00111 2Fe-2S iron-sulfur cluster binding domain JOS67_00825 PF00175 Oxidoreductase NAD-binding domain JOS67_00860 PF07219 HemY protein N-terminus JOS67_00865 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase JOS67_00870 PF02602 Uroporphyrinogen-III synthase HemD JOS67_00875 PF03900 Porphobilinogen deaminase, C-terminal domain JOS67_00875 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JOS67_00880 PF12633 Adenylate cyclase NT domain JOS67_00880 PF01295 Adenylate cyclase, class-I JOS67_00885 PF01491 Frataxin-like domain JOS67_00895 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JOS67_00895 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JOS67_00900 PF01678 Diaminopimelate epimerase JOS67_00910 PF02899 Phage integrase, N-terminal SAM-like domain JOS67_00910 PF00589 Phage integrase family JOS67_00915 PF13419 Haloacid dehalogenase-like hydrolase JOS67_00920 PF00990 Diguanylate cyclase, GGDEF domain JOS67_00920 PF08495 FIST N domain JOS67_00920 PF00563 EAL domain JOS67_00920 PF10442 FIST C domain JOS67_00925 PF03942 DTW domain JOS67_00945 PF12146 Serine aminopeptidase, S33 JOS67_00950 PF01810 LysE type translocator JOS67_00955 PF00563 EAL domain JOS67_00955 PF08668 HDOD domain JOS67_00960 PF01022 Bacterial regulatory protein, arsR family JOS67_00965 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JOS67_00965 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JOS67_00985 PF10694 Protein of unknown function (DUF2500) JOS67_01005 PF01914 MarC family integral membrane protein JOS67_01020 PF00448 SRP54-type protein, GTPase domain JOS67_01020 PF02881 SRP54-type protein, helical bundle domain JOS67_01025 PF00005 ABC transporter JOS67_01030 PF18075 FtsX extracellular domain JOS67_01035 PF04545 Sigma-70, region 4 JOS67_01035 PF00140 Sigma-70 factor, region 1.2 JOS67_01035 PF04542 Sigma-70 region 2 JOS67_01040 PF00581 Rhodanese-like domain JOS67_01045 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JOS67_01045 PF01694 Rhomboid family JOS67_01050 PF03748 Flagellar basal body-associated protein FliL JOS67_01055 PF04345 Chorismate lyase JOS67_01060 PF01040 UbiA prenyltransferase family JOS67_01065 PF01553 Acyltransferase JOS67_01070 PF01726 LexA DNA binding domain JOS67_01070 PF00717 Peptidase S24-like JOS67_01075 PF04072 Leucine carboxyl methyltransferase JOS67_01080 PF01554 MatE JOS67_01085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JOS67_01085 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_01090 PF00440 Bacterial regulatory proteins, tetR family JOS67_01100 PF05958 tRNA (Uracil-5-)-methyltransferase JOS67_01105 PF00593 TonB dependent receptor JOS67_01105 PF07715 TonB-dependent Receptor Plug Domain JOS67_01115 PF01177 Asp/Glu/Hydantoin racemase JOS67_01170 PF13091 PLD-like domain JOS67_01180 PF01565 FAD binding domain JOS67_01180 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JOS67_01185 PF02237 Biotin protein ligase C terminal domain JOS67_01185 PF03099 Biotin/lipoate A/B protein ligase family JOS67_01185 PF08279 HTH domain JOS67_01190 PF00485 Phosphoribulokinase / Uridine kinase family JOS67_01215 PF00009 Elongation factor Tu GTP binding domain JOS67_01215 PF03144 Elongation factor Tu domain 2 JOS67_01215 PF03143 Elongation factor Tu C-terminal domain JOS67_01220 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JOS67_01225 PF00467 KOW motif JOS67_01225 PF02357 Transcription termination factor nusG JOS67_01230 PF00298 Ribosomal protein L11, RNA binding domain JOS67_01230 PF03946 Ribosomal protein L11, N-terminal domain JOS67_01235 PF00687 Ribosomal protein L1p/L10e family JOS67_01240 PF00466 Ribosomal protein L10 JOS67_01245 PF00542 Ribosomal protein L7/L12 C-terminal domain JOS67_01245 PF16320 Ribosomal protein L7/L12 dimerisation domain JOS67_01250 PF04563 RNA polymerase beta subunit JOS67_01250 PF04561 RNA polymerase Rpb2, domain 2 JOS67_01250 PF04565 RNA polymerase Rpb2, domain 3 JOS67_01250 PF10385 RNA polymerase beta subunit external 1 domain JOS67_01250 PF04560 RNA polymerase Rpb2, domain 7 JOS67_01250 PF00562 RNA polymerase Rpb2, domain 6 JOS67_01255 PF04997 RNA polymerase Rpb1, domain 1 JOS67_01255 PF00623 RNA polymerase Rpb1, domain 2 JOS67_01255 PF04983 RNA polymerase Rpb1, domain 3 JOS67_01255 PF05000 RNA polymerase Rpb1, domain 4 JOS67_01255 PF04998 RNA polymerase Rpb1, domain 5 JOS67_01260 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ JOS67_01265 PF00293 NUDIX domain JOS67_01265 PF09297 NADH pyrophosphatase zinc ribbon domain JOS67_01270 PF01208 Uroporphyrinogen decarboxylase (URO-D) JOS67_01275 PF03167 Uracil DNA glycosylase superfamily JOS67_01280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JOS67_01285 PF04222 Protein of unknown function (DUF416) JOS67_01290 PF01595 Cyclin M transmembrane N-terminal domain JOS67_01290 PF00571 CBS domain JOS67_01295 PF00216 Bacterial DNA-binding protein JOS67_01305 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JOS67_01305 PF02843 Phosphoribosylglycinamide synthetase, C domain JOS67_01305 PF02844 Phosphoribosylglycinamide synthetase, N domain JOS67_01310 PF02142 MGS-like domain JOS67_01310 PF01808 AICARFT/IMPCHase bienzyme JOS67_01315 PF13411 MerR HTH family regulatory protein JOS67_01320 PF18500 CadC C-terminal domain 1 JOS67_01320 PF00486 Transcriptional regulatory protein, C terminal JOS67_01325 PF13520 Amino acid permease JOS67_01330 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JOS67_01330 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JOS67_01330 PF01276 Orn/Lys/Arg decarboxylase, major domain JOS67_01390 PF00005 ABC transporter JOS67_01390 PF12848 ABC transporter JOS67_01400 PF00589 Phage integrase family JOS67_01400 PF14659 Phage integrase, N-terminal SAM-like domain JOS67_01400 PF13356 Arm DNA-binding domain JOS67_01425 PF02954 Bacterial regulatory protein, Fis family JOS67_01430 PF01207 Dihydrouridine synthase (Dus) JOS67_01440 PF00289 Biotin carboxylase, N-terminal domain JOS67_01440 PF02785 Biotin carboxylase C-terminal domain JOS67_01440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JOS67_01445 PF00364 Biotin-requiring enzyme JOS67_01450 PF01220 Dehydroquinase class II JOS67_01455 PF16177 Acetyl-coenzyme A synthetase N-terminus JOS67_01455 PF00501 AMP-binding enzyme JOS67_01455 PF13193 AMP-binding enzyme C-terminal domain JOS67_01470 PF12832 MFS_1 like family JOS67_01475 PF00072 Response regulator receiver domain JOS67_01475 PF00512 His Kinase A (phospho-acceptor) domain JOS67_01475 PF09308 LuxQ, periplasmic JOS67_01475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_01480 PF10415 Fumarase C C-terminus JOS67_01480 PF00206 Lyase JOS67_01495 PF00474 Sodium:solute symporter family JOS67_01505 PF02080 TrkA-C domain JOS67_01505 PF00999 Sodium/hydrogen exchanger family JOS67_01505 PF03471 Transporter associated domain JOS67_01510 PF00072 Response regulator receiver domain JOS67_01510 PF00196 Bacterial regulatory proteins, luxR family JOS67_01515 PF11412 Disulphide bond corrector protein DsbC JOS67_01515 PF02683 Cytochrome C biogenesis protein transmembrane region JOS67_01520 PF03605 Anaerobic c4-dicarboxylate membrane transporter JOS67_01525 PF00206 Lyase JOS67_01525 PF10415 Fumarase C C-terminus JOS67_01530 PF04186 FxsA cytoplasmic membrane protein JOS67_01535 PF00588 SpoU rRNA Methylase family JOS67_01540 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JOS67_01540 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JOS67_01545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_01545 PF00512 His Kinase A (phospho-acceptor) domain JOS67_01545 PF00672 HAMP domain JOS67_01545 PF16527 Two-component sensor protein CpxA, periplasmic domain JOS67_01550 PF00486 Transcriptional regulatory protein, C terminal JOS67_01550 PF00072 Response regulator receiver domain JOS67_01555 PF07813 LTXXQ motif family protein JOS67_01560 PF16916 Dimerisation domain of Zinc Transporter JOS67_01560 PF01545 Cation efflux family JOS67_01565 PF00365 Phosphofructokinase JOS67_01570 PF01554 MatE JOS67_01575 PF00166 Chaperonin 10 Kd subunit JOS67_01580 PF00118 TCP-1/cpn60 chaperonin family JOS67_01585 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JOS67_01585 PF01348 Type II intron maturase JOS67_01595 PF02308 MgtC family JOS67_01600 PF04055 Radical SAM superfamily JOS67_01605 PF01132 Elongation factor P (EF-P) OB domain JOS67_01605 PF08207 Elongation factor P (EF-P) KOW-like domain JOS67_01605 PF09285 Elongation factor P, C-terminal JOS67_01615 PF02313 Fumarate reductase subunit D JOS67_01620 PF02300 Fumarate reductase subunit C JOS67_01625 PF13183 4Fe-4S dicluster domain JOS67_01625 PF13085 2Fe-2S iron-sulfur cluster binding domain JOS67_01630 PF02910 Fumarate reductase flavoprotein C-term JOS67_01630 PF00890 FAD binding domain JOS67_01635 PF00152 tRNA synthetases class II (D, K and N) JOS67_01645 PF08360 QacR-like protein, C-terminal region JOS67_01645 PF00440 Bacterial regulatory proteins, tetR family JOS67_01655 PF01551 Peptidase family M23 JOS67_01660 PF00132 Bacterial transferase hexapeptide (six repeats) JOS67_01660 PF06426 Serine acetyltransferase, N-terminal JOS67_01665 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JOS67_01665 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JOS67_01670 PF02556 Preprotein translocase subunit SecB JOS67_01675 PF00581 Rhodanese-like domain JOS67_01680 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JOS67_01680 PF01676 Metalloenzyme superfamily JOS67_01690 PF02080 TrkA-C domain JOS67_01690 PF03600 Citrate transporter JOS67_01695 PF02666 Phosphatidylserine decarboxylase JOS67_01700 PF03193 RsgA GTPase JOS67_01705 PF00929 Exonuclease JOS67_01770 PF08331 Domain of unknown function (DUF1730) JOS67_01775 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JOS67_01780 PF01520 N-acetylmuramoyl-L-alanine amidase JOS67_01785 PF01119 DNA mismatch repair protein, C-terminal domain JOS67_01785 PF08676 MutL C terminal dimerisation domain JOS67_01795 PF17209 Hfq protein JOS67_01800 PF16360 GTP-binding GTPase Middle Region JOS67_01800 PF01926 50S ribosome-binding GTPase JOS67_01800 PF13167 GTP-binding GTPase N-terminal JOS67_01805 PF01145 SPFH domain / Band 7 family JOS67_01805 PF12221 Bacterial membrane protein N terminal JOS67_01810 PF01145 SPFH domain / Band 7 family JOS67_01815 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) JOS67_01820 PF00709 Adenylosuccinate synthetase JOS67_01825 PF08238 Sel1 repeat JOS67_01830 PF00970 Oxidoreductase FAD-binding domain JOS67_01830 PF00175 Oxidoreductase NAD-binding domain JOS67_01830 PF00042 Globin JOS67_01835 PF02082 Transcriptional regulator JOS67_01840 PF17876 Cold shock domain JOS67_01840 PF08461 Ribonuclease R winged-helix domain JOS67_01840 PF08206 Ribonuclease B OB domain JOS67_01840 PF00773 RNB domain JOS67_01840 PF00575 S1 RNA binding domain JOS67_01845 PF08032 RNA 2'-O ribose methyltransferase substrate binding JOS67_01845 PF00588 SpoU rRNA Methylase family JOS67_01850 PF13419 Haloacid dehalogenase-like hydrolase JOS67_01855 PF00579 tRNA synthetases class I (W and Y) JOS67_01870 PF00117 Glutamine amidotransferase class-I JOS67_01875 PF00202 Aminotransferase class-III JOS67_01880 PF04958 Arginine N-succinyltransferase beta subunit JOS67_01885 PF00171 Aldehyde dehydrogenase family JOS67_01895 PF13545 Crp-like helix-turn-helix domain JOS67_01895 PF00027 Cyclic nucleotide-binding domain JOS67_01900 PF00485 Phosphoribulokinase / Uridine kinase family JOS67_01905 PF06794 Uncharacterised protein family (UPF0270) JOS67_01910 PF00561 alpha/beta hydrolase fold JOS67_01920 PF12848 ABC transporter JOS67_01920 PF00005 ABC transporter JOS67_01925 PF02525 Flavodoxin-like fold JOS67_01930 PF00999 Sodium/hydrogen exchanger family JOS67_01930 PF02254 TrkA-N domain JOS67_01940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JOS67_01945 PF01112 Asparaginase JOS67_01950 PF04102 SlyX JOS67_01960 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JOS67_01960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JOS67_01965 PF13309 HTH domain JOS67_01965 PF08348 YheO-like PAS domain JOS67_01970 PF02635 DsrE/DsrF-like family JOS67_01975 PF02635 DsrE/DsrF-like family JOS67_01980 PF04077 DsrH like protein JOS67_01985 PF00164 Ribosomal protein S12/S23 JOS67_01990 PF00177 Ribosomal protein S7p/S5e JOS67_01995 PF14492 Elongation Factor G, domain II JOS67_01995 PF03764 Elongation factor G, domain IV JOS67_01995 PF00009 Elongation factor Tu GTP binding domain JOS67_01995 PF03144 Elongation factor Tu domain 2 JOS67_01995 PF00679 Elongation factor G C-terminus JOS67_02000 PF00009 Elongation factor Tu GTP binding domain JOS67_02000 PF03144 Elongation factor Tu domain 2 JOS67_02000 PF03143 Elongation factor Tu C-terminal domain JOS67_02005 PF04324 BFD-like [2Fe-2S] binding domain JOS67_02010 PF00210 Ferritin-like domain JOS67_02015 PF00390 Malic enzyme, N-terminal domain JOS67_02015 PF03949 Malic enzyme, NAD binding domain JOS67_02020 PF01340 Met Apo-repressor, MetJ JOS67_02025 PF01053 Cys/Met metabolism PLP-dependent enzyme JOS67_02030 PF00696 Amino acid kinase family JOS67_02030 PF03447 Homoserine dehydrogenase, NAD binding domain JOS67_02030 PF00742 Homoserine dehydrogenase JOS67_02035 PF02219 Methylenetetrahydrofolate reductase JOS67_02045 PF00311 Phosphoenolpyruvate carboxylase JOS67_02050 PF07687 Peptidase dimerisation domain JOS67_02050 PF01546 Peptidase family M20/M25/M40 JOS67_02055 PF02774 Semialdehyde dehydrogenase, dimerisation domain JOS67_02055 PF01118 Semialdehyde dehydrogenase, NAD binding domain JOS67_02060 PF00696 Amino acid kinase family JOS67_02065 PF00764 Arginosuccinate synthase JOS67_02070 PF00583 Acetyltransferase (GNAT) family JOS67_02070 PF14698 Argininosuccinate lyase C-terminal JOS67_02070 PF00206 Lyase JOS67_02080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JOS67_02080 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_02085 PF00462 Glutaredoxin JOS67_02085 PF08534 Redoxin JOS67_02090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_02090 PF03466 LysR substrate binding domain JOS67_02095 PF17092 Penicillin-binding protein OB-like domain JOS67_02095 PF00912 Transglycosylase JOS67_02095 PF00905 Penicillin binding protein transpeptidase domain JOS67_02105 PF05137 Fimbrial assembly protein (PilN) JOS67_02115 PF04351 Pilus assembly protein, PilP JOS67_02120 PF03958 Bacterial type II/III secretion system short domain JOS67_02120 PF11741 AMIN domain JOS67_02120 PF07660 Secretin and TonB N terminus short domain JOS67_02120 PF00263 Bacterial type II and III secretion system protein JOS67_02125 PF01202 Shikimate kinase JOS67_02130 PF01761 3-dehydroquinate synthase JOS67_02140 PF02086 D12 class N6 adenine-specific DNA methyltransferase JOS67_02145 PF00834 Ribulose-phosphate 3 epimerase family JOS67_02150 PF01250 Ribosomal protein S6 JOS67_02155 PF00436 Single-strand binding protein family JOS67_02160 PF01084 Ribosomal protein S18 JOS67_02165 PF03948 Ribosomal protein L9, C-terminal domain JOS67_02165 PF01281 Ribosomal protein L9, N-terminal domain JOS67_02175 PF03796 DnaB-like helicase C terminal domain JOS67_02175 PF00772 DnaB-like helicase N terminal domain JOS67_02180 PF00842 Alanine racemase, C-terminal domain JOS67_02180 PF01168 Alanine racemase, N-terminal domain JOS67_02185 PF01894 Uncharacterised protein family UPF0047 JOS67_02190 PF00342 Phosphoglucose isomerase JOS67_02200 PF01475 Ferric uptake regulator family JOS67_02205 PF01207 Dihydrouridine synthase (Dus) JOS67_02225 PF00175 Oxidoreductase NAD-binding domain JOS67_02225 PF00258 Flavodoxin JOS67_02225 PF00667 FAD binding domain JOS67_02230 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JOS67_02230 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JOS67_02235 PF01507 Phosphoadenosine phosphosulfate reductase family JOS67_02295 PF00999 Sodium/hydrogen exchanger family JOS67_02300 PF02310 B12 binding domain JOS67_02300 PF02574 Homocysteine S-methyltransferase JOS67_02300 PF00809 Pterin binding enzyme JOS67_02300 PF02965 Vitamin B12 dependent methionine synthase, activation domain JOS67_02300 PF02607 B12 binding domain JOS67_02305 PF01842 ACT domain JOS67_02305 PF00696 Amino acid kinase family JOS67_02310 PF00266 Aminotransferase class-V JOS67_02320 PF00005 ABC transporter JOS67_02320 PF17755 UvrA DNA-binding domain JOS67_02320 PF17760 UvrA interaction domain JOS67_02325 PF00483 Nucleotidyl transferase JOS67_02330 PF00196 Bacterial regulatory proteins, luxR family JOS67_02335 PF00436 Single-strand binding protein family JOS67_02340 PF00563 EAL domain JOS67_02340 PF17157 Gammaproteobacterial periplasmic sensor domain JOS67_02340 PF00990 Diguanylate cyclase, GGDEF domain JOS67_02360 PF00263 Bacterial type II and III secretion system protein JOS67_02360 PF03958 Bacterial type II/III secretion system short domain JOS67_02365 PF01471 Putative peptidoglycan binding domain JOS67_02365 PF13401 AAA domain JOS67_02375 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JOS67_02375 PF00437 Type II/IV secretion system protein JOS67_02380 PF00482 Type II secretion system (T2SS), protein F JOS67_02390 PF13808 DDE_Tnp_1-associated JOS67_02390 PF01609 Transposase DDE domain JOS67_02435 PF04085 rod shape-determining protein MreC JOS67_02440 PF04093 rod shape-determining protein MreD JOS67_02445 PF02545 Maf-like protein JOS67_02450 PF00575 S1 RNA binding domain JOS67_02450 PF10150 Ribonuclease E/G family JOS67_02455 PF13502 AsmA-like C-terminal region JOS67_02455 PF13116 Protein of unknown function JOS67_02460 PF00795 Carbon-nitrogen hydrolase JOS67_02465 PF01523 Putative modulator of DNA gyrase JOS67_02470 PF02562 PhoH-like protein JOS67_02470 PF13638 PIN domain JOS67_02475 PF18337 RapA N-terminal Tudor like domain JOS67_02475 PF00176 SNF2 family N-terminal domain JOS67_02475 PF18339 RapA N-terminal Tudor like domain 1 JOS67_02475 PF00271 Helicase conserved C-terminal domain JOS67_02475 PF12137 RNA polymerase recycling family C-terminal JOS67_02485 PF00849 RNA pseudouridylate synthase JOS67_02490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JOS67_02490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JOS67_02495 PF04751 Protein of unknown function (DUF615) JOS67_02500 PF01523 Putative modulator of DNA gyrase JOS67_02505 PF03448 MgtE intracellular N domain JOS67_02505 PF00571 CBS domain JOS67_02505 PF01769 Divalent cation transporter JOS67_02510 PF00381 PTS HPr component phosphorylation site JOS67_02515 PF03668 P-loop ATPase protein family JOS67_02520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOS67_02525 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JOS67_02530 PF00309 Sigma-54 factor, Activator interacting domain (AID) JOS67_02530 PF04963 Sigma-54 factor, core binding domain JOS67_02530 PF04552 Sigma-54, DNA binding domain JOS67_02535 PF12399 Branched-chain amino acid ATP-binding cassette transporter JOS67_02535 PF00005 ABC transporter JOS67_02540 PF03968 OstA-like protein JOS67_02550 PF00571 CBS domain JOS67_02550 PF01380 SIS domain JOS67_02555 PF01699 Sodium/calcium exchanger protein JOS67_02560 PF00005 ABC transporter JOS67_02565 PF02405 Permease MlaE JOS67_02570 PF02470 MlaD protein JOS67_02575 PF05494 MlaC protein JOS67_02585 PF01722 BolA-like protein JOS67_02590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JOS67_02595 PF01553 Acyltransferase JOS67_02600 PF01042 Endoribonuclease L-PSP JOS67_02605 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JOS67_02605 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JOS67_02610 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JOS67_02610 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JOS67_02620 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JOS67_02620 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JOS67_02630 PF06877 Regulator of ribonuclease activity B JOS67_02640 PF00583 Acetyltransferase (GNAT) family JOS67_02650 PF08264 Anticodon-binding domain of tRNA JOS67_02650 PF00133 tRNA synthetases class I (I, L, M and V) JOS67_02650 PF10458 Valyl tRNA synthetase tRNA binding arm JOS67_02655 PF04364 DNA polymerase III chi subunit, HolC JOS67_02660 PF00883 Cytosol aminopeptidase family, catalytic domain JOS67_02660 PF02789 Cytosol aminopeptidase family, N-terminal domain JOS67_02665 PF03739 Lipopolysaccharide export system permease LptF/LptG JOS67_02670 PF03739 Lipopolysaccharide export system permease LptF/LptG JOS67_02680 PF10011 Predicted membrane protein (DUF2254) JOS67_02695 PF01522 Polysaccharide deacetylase JOS67_02700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOS67_02705 PF02378 Phosphotransferase system, EIIC JOS67_02710 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JOS67_02715 PF02056 Family 4 glycosyl hydrolase JOS67_02715 PF11975 Family 4 glycosyl hydrolase C-terminal domain JOS67_02720 PF04794 YdjC-like protein JOS67_02725 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JOS67_02725 PF00356 Bacterial regulatory proteins, lacI family JOS67_02765 PF00171 Aldehyde dehydrogenase family JOS67_02795 PF00672 HAMP domain JOS67_02795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_02795 PF17200 Single Cache domain 2 JOS67_02835 PF01464 Transglycosylase SLT domain JOS67_02835 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JOS67_02840 PF04362 Bacterial Fe(2+) trafficking JOS67_02845 PF14815 NUDIX domain JOS67_02845 PF00730 HhH-GPD superfamily base excision DNA repair protein JOS67_02845 PF00633 Helix-hairpin-helix motif JOS67_02850 PF02390 Putative methyltransferase JOS67_02855 PF02086 D12 class N6 adenine-specific DNA methyltransferase JOS67_02860 PF04960 Glutaminase JOS67_02865 PF04055 Radical SAM superfamily JOS67_02865 PF06969 HemN C-terminal domain JOS67_02870 PF01725 Ham1 family JOS67_02880 PF02594 Uncharacterised ACR, YggU family COG1872 JOS67_02885 PF02325 YGGT family JOS67_02890 PF03807 NADP oxidoreductase coenzyme F420-dependent JOS67_02890 PF14748 Pyrroline-5-carboxylate reductase dimerisation JOS67_02895 PF01168 Alanine racemase, N-terminal domain JOS67_02900 PF00437 Type II/IV secretion system protein JOS67_02905 PF00437 Type II/IV secretion system protein JOS67_02910 PF03652 Holliday junction resolvase JOS67_02915 PF02622 Uncharacterized ACR, COG1678 JOS67_02920 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JOS67_02920 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JOS67_02925 PF04452 RNA methyltransferase JOS67_02930 PF04231 Endonuclease I JOS67_02935 PF17283 SprT-like zinc ribbon domain JOS67_02935 PF10263 SprT-like family JOS67_02945 PF02773 S-adenosylmethionine synthetase, C-terminal domain JOS67_02945 PF02772 S-adenosylmethionine synthetase, central domain JOS67_02945 PF00438 S-adenosylmethionine synthetase, N-terminal domain JOS67_02950 PF02780 Transketolase, C-terminal domain JOS67_02950 PF02779 Transketolase, pyrimidine binding domain JOS67_02950 PF00456 Transketolase, thiamine diphosphate binding domain JOS67_02955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_02955 PF03466 LysR substrate binding domain JOS67_02960 PF00593 TonB dependent receptor JOS67_02960 PF07715 TonB-dependent Receptor Plug Domain JOS67_02965 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JOS67_02965 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JOS67_02970 PF00162 Phosphoglycerate kinase JOS67_02975 PF01116 Fructose-bisphosphate aldolase class-II JOS67_02980 PF05552 Conserved TM helix JOS67_02980 PF00924 Mechanosensitive ion channel JOS67_02990 PF01810 LysE type translocator JOS67_02995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_02995 PF03466 LysR substrate binding domain JOS67_03000 PF04402 Protein of unknown function (DUF541) JOS67_03005 PF01842 ACT domain JOS67_03005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JOS67_03005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JOS67_03010 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JOS67_03015 PF01812 5-formyltetrahydrofolate cyclo-ligase family JOS67_03025 PF05164 Cell division protein ZapA JOS67_03030 PF03695 Uncharacterised protein family (UPF0149) JOS67_03035 PF01494 FAD binding domain JOS67_03040 PF01494 FAD binding domain JOS67_03055 PF01571 Aminomethyltransferase folate-binding domain JOS67_03060 PF03937 Flavinator of succinate dehydrogenase JOS67_03065 PF00890 FAD binding domain JOS67_03065 PF02910 Fumarate reductase flavoprotein C-term JOS67_03070 PF08281 Sigma-70, region 4 JOS67_03070 PF04542 Sigma-70 region 2 JOS67_03075 PF03873 Anti sigma-E protein RseA, C-terminal domain JOS67_03075 PF03872 Anti sigma-E protein RseA, N-terminal domain JOS67_03080 PF17188 MucB/RseB C-terminal domain JOS67_03080 PF03888 MucB/RseB N-terminal domain JOS67_03090 PF00009 Elongation factor Tu GTP binding domain JOS67_03090 PF00679 Elongation factor G C-terminus JOS67_03090 PF03144 Elongation factor Tu domain 2 JOS67_03090 PF06421 GTP-binding protein LepA C-terminus JOS67_03095 PF10502 Signal peptidase, peptidase S26 JOS67_03100 PF00035 Double-stranded RNA binding motif JOS67_03100 PF14622 Ribonuclease-III-like JOS67_03105 PF01926 50S ribosome-binding GTPase JOS67_03105 PF07650 KH domain JOS67_03110 PF02565 Recombination protein O C terminal JOS67_03110 PF11967 Recombination protein O N terminal JOS67_03115 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JOS67_03120 PF01648 4'-phosphopantetheinyl transferase superfamily JOS67_03125 PF00512 His Kinase A (phospho-acceptor) domain JOS67_03125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JOS67_03125 PF00072 Response regulator receiver domain JOS67_03125 PF01627 Hpt domain JOS67_03125 PF00672 HAMP domain JOS67_03125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_03130 PF05958 tRNA (Uracil-5-)-methyltransferase JOS67_03130 PF01938 TRAM domain JOS67_03135 PF04607 Region found in RelA / SpoT proteins JOS67_03135 PF13291 ACT domain JOS67_03135 PF02824 TGS domain JOS67_03140 PF03819 MazG nucleotide pyrophosphohydrolase domain JOS67_03145 PF00117 Glutamine amidotransferase class-I JOS67_03145 PF06418 CTP synthase N-terminus JOS67_03150 PF03952 Enolase, N-terminal domain JOS67_03150 PF00113 Enolase, C-terminal TIM barrel domain JOS67_03155 PF04977 Septum formation initiator JOS67_03160 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JOS67_03165 PF02542 YgbB family JOS67_03170 PF01142 tRNA pseudouridine synthase D (TruD) JOS67_03175 PF01975 Survival protein SurE JOS67_03185 PF01476 LysM domain JOS67_03185 PF01551 Peptidase family M23 JOS67_03190 PF04542 Sigma-70 region 2 JOS67_03190 PF04545 Sigma-70, region 4 JOS67_03190 PF04539 Sigma-70 region 3 JOS67_03190 PF00140 Sigma-70 factor, region 1.2 JOS67_03195 PF00488 MutS domain V JOS67_03195 PF05188 MutS domain II JOS67_03195 PF05192 MutS domain III JOS67_03195 PF01624 MutS domain I JOS67_03195 PF05190 MutS family domain IV JOS67_03200 PF02464 Competence-damaged protein JOS67_03210 PF00154 recA bacterial DNA recombination protein JOS67_03305 PF02631 RecX family JOS67_03310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JOS67_03310 PF01411 tRNA synthetases class II (A) JOS67_03310 PF02272 DHHA1 domain JOS67_03315 PF00696 Amino acid kinase family JOS67_03315 PF13840 ACT domain JOS67_03315 PF01842 ACT domain JOS67_03320 PF02599 Global regulator protein family JOS67_03375 PF04277 Oxaloacetate decarboxylase, gamma chain JOS67_03380 PF00682 HMGL-like JOS67_03380 PF00364 Biotin-requiring enzyme JOS67_03380 PF02436 Conserved carboxylase domain JOS67_03385 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit JOS67_03390 PF08240 Alcohol dehydrogenase GroES-like domain JOS67_03390 PF00107 Zinc-binding dehydrogenase JOS67_03395 PF09335 SNARE associated Golgi protein JOS67_03400 PF00675 Insulinase (Peptidase family M16) JOS67_03400 PF05193 Peptidase M16 inactive domain JOS67_03405 PF04262 Glutamate-cysteine ligase JOS67_03415 PF02664 S-Ribosylhomocysteinase (LuxS) JOS67_03420 PF00571 CBS domain JOS67_03420 PF03471 Transporter associated domain JOS67_03420 PF01595 Cyclin M transmembrane N-terminal domain JOS67_03425 PF01578 Cytochrome C assembly protein JOS67_03430 PF02881 SRP54-type protein, helical bundle domain JOS67_03430 PF00448 SRP54-type protein, GTPase domain JOS67_03430 PF02978 Signal peptide binding domain JOS67_03435 PF00886 Ribosomal protein S16 JOS67_03440 PF01782 RimM N-terminal domain JOS67_03440 PF05239 PRC-barrel domain JOS67_03445 PF01746 tRNA (Guanine-1)-methyltransferase JOS67_03450 PF01245 Ribosomal protein L19 JOS67_03455 PF03884 DNA gyrase inhibitor YacG JOS67_03460 PF07072 Cell division protein JOS67_03465 PF01121 Dephospho-CoA kinase JOS67_03470 PF01478 Type IV leader peptidase family JOS67_03470 PF06750 Bacterial Peptidase A24 N-terminal domain JOS67_03475 PF00482 Type II secretion system (T2SS), protein F JOS67_03480 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JOS67_03480 PF00437 Type II/IV secretion system protein JOS67_03485 PF00114 Pilin (bacterial filament) JOS67_03485 PF07963 Prokaryotic N-terminal methylation motif JOS67_03490 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JOS67_03490 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JOS67_03495 PF01510 N-acetylmuramoyl-L-alanine amidase JOS67_03500 PF00392 Bacterial regulatory proteins, gntR family JOS67_03500 PF07729 FCD domain JOS67_03505 PF17831 Pyruvate dehydrogenase E1 component middle domain JOS67_03505 PF00456 Transketolase, thiamine diphosphate binding domain JOS67_03510 PF00364 Biotin-requiring enzyme JOS67_03510 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JOS67_03510 PF02817 e3 binding domain JOS67_03515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JOS67_03515 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_03520 PF00440 Bacterial regulatory proteins, tetR family JOS67_03525 PF00156 Phosphoribosyl transferase domain JOS67_03530 PF00484 Carbonic anhydrase JOS67_03535 PF00916 Sulfate permease family JOS67_03535 PF01740 STAS domain JOS67_03540 PF00005 ABC transporter JOS67_03545 PF01061 ABC-2 type transporter JOS67_03550 PF03279 Bacterial lipid A biosynthesis acyltransferase JOS67_03555 PF02569 Pantoate-beta-alanine ligase JOS67_03560 PF02548 Ketopantoate hydroxymethyltransferase JOS67_03565 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JOS67_03570 PF12627 Probable RNA and SrmB- binding site of polymerase A JOS67_03570 PF12626 Polymerase A arginine-rich C-terminus JOS67_03570 PF01743 Poly A polymerase head domain JOS67_03575 PF00749 tRNA synthetases class I (E and Q), catalytic domain JOS67_03580 PF01258 Prokaryotic dksA/traR C4-type zinc finger JOS67_03585 PF17746 SfsA N-terminal OB domain JOS67_03585 PF03749 Sugar fermentation stimulation protein RE domain JOS67_03590 PF00270 DEAD/DEAH box helicase JOS67_03590 PF04408 Helicase associated domain (HA2) JOS67_03590 PF00271 Helicase conserved C-terminal domain JOS67_03590 PF08482 ATP-dependent helicase C-terminal JOS67_03595 PF14814 Bifunctional transglycosylase second domain JOS67_03595 PF00912 Transglycosylase JOS67_03595 PF00905 Penicillin binding protein transpeptidase domain JOS67_03600 PF01734 Patatin-like phospholipase JOS67_03605 PF00330 Aconitase family (aconitate hydratase) JOS67_03605 PF06434 Aconitate hydratase 2 N-terminus JOS67_03605 PF11791 Aconitate B N-terminal domain JOS67_03610 PF06062 Uncharacterised protein family (UPF0231) JOS67_03615 PF00543 Nitrogen regulatory protein P-II JOS67_03620 PF00909 Ammonium Transporter Family JOS67_03625 PF13416 Bacterial extracellular solute-binding protein JOS67_03635 PF00005 ABC transporter JOS67_03635 PF08402 TOBE domain JOS67_03640 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JOS67_03640 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JOS67_03640 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JOS67_03640 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JOS67_03645 PF06165 Glycosyltransferase family 36 JOS67_03645 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain JOS67_03650 PF02838 Glycosyl hydrolase family 20, domain 2 JOS67_03650 PF00728 Glycosyl hydrolase family 20, catalytic domain JOS67_03655 PF01869 BadF/BadG/BcrA/BcrD ATPase family JOS67_03665 PF00005 ABC transporter JOS67_03665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS67_03670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS67_03670 PF00005 ABC transporter JOS67_03675 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_03675 PF12911 N-terminal TM domain of oligopeptide transport permease C JOS67_03680 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_03685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JOS67_03690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_03690 PF09308 LuxQ, periplasmic JOS67_03690 PF00072 Response regulator receiver domain JOS67_03690 PF00512 His Kinase A (phospho-acceptor) domain JOS67_03695 PF08468 Methyltransferase small domain N-terminal JOS67_03695 PF05175 Methyltransferase small domain JOS67_03700 PF01594 AI-2E family transporter JOS67_03705 PF00202 Aminotransferase class-III JOS67_03710 PF01521 Iron-sulphur cluster biosynthesis JOS67_03720 PF00873 AcrB/AcrD/AcrF family JOS67_03725 PF08525 Opacity-associated protein A N-terminal motif JOS67_03725 PF01551 Peptidase family M23 JOS67_03725 PF01476 LysM domain JOS67_03730 PF00579 tRNA synthetases class I (W and Y) JOS67_03740 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JOS67_03745 PF13609 Gram-negative porin JOS67_03750 PF03449 Transcription elongation factor, N-terminal JOS67_03750 PF01272 Transcription elongation factor, GreA/GreB, C-term JOS67_03755 PF01985 CRS1 / YhbY (CRM) domain JOS67_03760 PF01728 FtsJ-like methyltransferase JOS67_03765 PF01434 Peptidase family M41 JOS67_03765 PF00004 ATPase family associated with various cellular activities (AAA) JOS67_03765 PF17862 AAA+ lid domain JOS67_03765 PF06480 FtsH Extracellular JOS67_03770 PF00809 Pterin binding enzyme JOS67_03775 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JOS67_03775 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JOS67_03775 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JOS67_03775 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JOS67_03780 PF03840 Preprotein translocase SecG subunit JOS67_03795 PF02576 RimP N-terminal domain JOS67_03795 PF17384 RimP C-terminal SH3 domain JOS67_03800 PF00575 S1 RNA binding domain JOS67_03800 PF13184 NusA-like KH domain JOS67_03800 PF08529 NusA N-terminal domain JOS67_03805 PF00009 Elongation factor Tu GTP binding domain JOS67_03805 PF11987 Translation-initiation factor 2 JOS67_03805 PF08364 Bacterial translation initiation factor IF-2 associated region JOS67_03805 PF04760 Translation initiation factor IF-2, N-terminal region JOS67_03810 PF02033 Ribosome-binding factor A JOS67_03815 PF01509 TruB family pseudouridylate synthase (N terminal domain) JOS67_03815 PF16198 tRNA pseudouridylate synthase B C-terminal domain JOS67_03815 PF09157 Pseudouridine synthase II TruB, C-terminal JOS67_03820 PF00312 Ribosomal protein S15 JOS67_03825 PF00575 S1 RNA binding domain JOS67_03825 PF00013 KH domain JOS67_03825 PF03725 3' exoribonuclease family, domain 2 JOS67_03825 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JOS67_03825 PF01138 3' exoribonuclease family, domain 1 JOS67_03830 PF13181 Tetratricopeptide repeat JOS67_03830 PF07719 Tetratricopeptide repeat JOS67_03835 PF13542 Helix-turn-helix domain of transposase family ISL3 JOS67_03835 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JOS67_03835 PF01610 Transposase JOS67_03845 PF01554 MatE JOS67_03850 PF01136 Peptidase family U32 JOS67_03855 PF01136 Peptidase family U32 JOS67_03860 PF00990 Diguanylate cyclase, GGDEF domain JOS67_03860 PF03707 Bacterial signalling protein N terminal repeat JOS67_03860 PF00563 EAL domain JOS67_03865 PF02036 SCP-2 sterol transfer family JOS67_03870 PF13508 Acetyltransferase (GNAT) domain JOS67_03890 PF16658 Class II release factor RF3, C-terminal domain JOS67_03890 PF03144 Elongation factor Tu domain 2 JOS67_03890 PF00009 Elongation factor Tu GTP binding domain JOS67_03900 PF01026 TatD related DNase JOS67_03905 PF07670 Nucleoside recognition JOS67_03905 PF01773 Na+ dependent nucleoside transporter N-terminus JOS67_03905 PF07662 Na+ dependent nucleoside transporter C-terminus JOS67_03910 PF01791 DeoC/LacD family aldolase JOS67_03915 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JOS67_03915 PF02885 Glycosyl transferase family, helical bundle domain JOS67_03915 PF00591 Glycosyl transferase family, a/b domain JOS67_03920 PF01676 Metalloenzyme superfamily JOS67_03925 PF01048 Phosphorylase superfamily JOS67_03935 PF18429 Domain of unknown function (DUF5609) JOS67_03945 PF18073 Rubredoxin metal binding domain JOS67_03950 PF03144 Elongation factor Tu domain 2 JOS67_03950 PF00009 Elongation factor Tu GTP binding domain JOS67_03950 PF03764 Elongation factor G, domain IV JOS67_03950 PF00679 Elongation factor G C-terminus JOS67_03950 PF14492 Elongation Factor G, domain II JOS67_03955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_03955 PF03466 LysR substrate binding domain JOS67_03965 PF00501 AMP-binding enzyme JOS67_03970 PF12833 Helix-turn-helix domain JOS67_03970 PF02311 AraC-like ligand binding domain JOS67_03995 PF13629 Pilus formation protein N terminal region JOS67_03995 PF04972 BON domain JOS67_03995 PF00263 Bacterial type II and III secretion system protein JOS67_04025 PF00437 Type II/IV secretion system protein JOS67_04055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_04055 PF03466 LysR substrate binding domain JOS67_04060 PF13520 Amino acid permease JOS67_04065 PF04074 YhcH/YjgK/YiaL JOS67_04070 PF16353 Domain of unknown function(DUF4981) JOS67_04070 PF02929 Beta galactosidase small chain JOS67_04070 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JOS67_04070 PF00703 Glycosyl hydrolases family 2 JOS67_04070 PF02837 Glycosyl hydrolases family 2, sugar binding domain JOS67_04075 PF00356 Bacterial regulatory proteins, lacI family JOS67_04080 PF16363 GDP-mannose 4,6 dehydratase JOS67_04085 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JOS67_04085 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JOS67_04090 PF08544 GHMP kinases C terminal JOS67_04090 PF10509 Galactokinase galactose-binding signature JOS67_04090 PF00288 GHMP kinases N terminal domain JOS67_04095 PF01263 Aldose 1-epimerase JOS67_04100 PF00356 Bacterial regulatory proteins, lacI family JOS67_04115 PF00356 Bacterial regulatory proteins, lacI family JOS67_04120 PF01588 Putative tRNA binding domain JOS67_04140 PF01544 CorA-like Mg2+ transporter protein JOS67_04145 PF01266 FAD dependent oxidoreductase JOS67_04145 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JOS67_04150 PF08220 DeoR-like helix-turn-helix domain JOS67_04150 PF00455 DeoR C terminal sensor domain JOS67_04155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JOS67_04155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JOS67_04160 PF00230 Major intrinsic protein JOS67_04165 PF07690 Major Facilitator Superfamily JOS67_04170 PF03009 Glycerophosphoryl diester phosphodiesterase family JOS67_04175 PF14602 Hexapeptide repeat of succinyl-transferase JOS67_04175 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle JOS67_04180 PF07130 YebG protein JOS67_04185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_04185 PF03466 LysR substrate binding domain JOS67_04195 PF00884 Sulfatase JOS67_04195 PF11893 Domain of unknown function (DUF3413) JOS67_04200 PF17946 RecC C-terminal domain JOS67_04205 PF12705 PD-(D/E)XK nuclease superfamily JOS67_04205 PF13361 UvrD-like helicase C-terminal domain JOS67_04205 PF00580 UvrD/REP helicase N-terminal domain JOS67_04210 PF13538 UvrD-like helicase C-terminal domain JOS67_04220 PF00583 Acetyltransferase (GNAT) family JOS67_04220 PF00696 Amino acid kinase family JOS67_04230 PF03562 MltA specific insert domain JOS67_04230 PF06725 3D domain JOS67_04235 PF00899 ThiF family JOS67_04240 PF02657 Fe-S metabolism associated domain JOS67_04245 PF00990 Diguanylate cyclase, GGDEF domain JOS67_04245 PF17158 Membrane-associated sensor, integral membrane domain JOS67_04250 PF00266 Aminotransferase class-V JOS67_04255 PF01965 DJ-1/PfpI family JOS67_04260 PF02558 Ketopantoate reductase PanE/ApbA JOS67_04260 PF08546 Ketopantoate reductase PanE/ApbA C terminal JOS67_04265 PF03502 Nucleoside-specific channel-forming protein, Tsx JOS67_04280 PF04542 Sigma-70 region 2 JOS67_04280 PF04545 Sigma-70, region 4 JOS67_04290 PF07690 Major Facilitator Superfamily JOS67_04295 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JOS67_04300 PF03923 Uncharacterized lipoprotein JOS67_04300 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JOS67_04305 PF05175 Methyltransferase small domain JOS67_04310 PF01722 BolA-like protein JOS67_04315 PF11973 NQRA C-terminal domain JOS67_04315 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) JOS67_04320 PF03116 NQR2, RnfD, RnfE family JOS67_04325 PF04205 FMN-binding domain JOS67_04330 PF02508 Rnf-Nqr subunit, membrane protein JOS67_04335 PF02508 Rnf-Nqr subunit, membrane protein JOS67_04340 PF00970 Oxidoreductase FAD-binding domain JOS67_04340 PF00111 2Fe-2S iron-sulfur cluster binding domain JOS67_04340 PF00175 Oxidoreductase NAD-binding domain JOS67_04345 PF02424 ApbE family JOS67_04360 PF11799 impB/mucB/samB family C-terminal domain JOS67_04360 PF11798 IMS family HHH motif JOS67_04360 PF00817 impB/mucB/samB family JOS67_04365 PF09382 RQC domain JOS67_04365 PF16124 RecQ zinc-binding JOS67_04365 PF00570 HRDC domain JOS67_04365 PF00271 Helicase conserved C-terminal domain JOS67_04365 PF00270 DEAD/DEAH box helicase JOS67_04370 PF03449 Transcription elongation factor, N-terminal JOS67_04370 PF01272 Transcription elongation factor, GreA/GreB, C-term JOS67_04380 PF00041 Fibronectin type III domain JOS67_04380 PF02018 Carbohydrate binding domain JOS67_04380 PF00704 Glycosyl hydrolases family 18 JOS67_04385 PF00209 Sodium:neurotransmitter symporter family JOS67_04395 PF06786 Uncharacterised protein family (UPF0253) JOS67_04405 PF03129 Anticodon binding domain JOS67_04405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JOS67_04405 PF04073 Aminoacyl-tRNA editing domain JOS67_04410 PF01980 tRNA-methyltransferase O JOS67_04410 PF18389 TrmO C-terminal domain JOS67_04415 PF01197 Ribosomal protein L31 JOS67_04420 PF00444 Ribosomal protein L36 JOS67_04425 PF03806 AbgT putative transporter family JOS67_04450 PF01370 NAD dependent epimerase/dehydratase family JOS67_04455 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JOS67_04455 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JOS67_04460 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JOS67_04485 PF00849 RNA pseudouridylate synthase JOS67_04485 PF04287 tRNA pseudouridine synthase C JOS67_04490 PF00849 RNA pseudouridylate synthase JOS67_04495 PF11944 Protein of unknown function (DUF3461) JOS67_04500 PF01909 Nucleotidyltransferase domain JOS67_04500 PF01966 HD domain JOS67_04500 PF08335 GlnD PII-uridylyltransferase JOS67_04500 PF01842 ACT domain JOS67_04505 PF00557 Metallopeptidase family M24 JOS67_04510 PF00318 Ribosomal protein S2 JOS67_04515 PF00889 Elongation factor TS JOS67_04520 PF00696 Amino acid kinase family JOS67_04525 PF01765 Ribosome recycling factor JOS67_04530 PF01255 Putative undecaprenyl diphosphate synthase JOS67_04540 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JOS67_04540 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JOS67_04540 PF13288 DXP reductoisomerase C-terminal domain JOS67_04545 PF02163 Peptidase family M50 JOS67_04545 PF17820 PDZ domain JOS67_04550 PF01103 Surface antigen JOS67_04550 PF07244 Surface antigen variable number repeat JOS67_04555 PF03938 Outer membrane protein (OmpH-like) JOS67_04560 PF00132 Bacterial transferase hexapeptide (six repeats) JOS67_04560 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JOS67_04565 PF07977 FabA-like domain JOS67_04570 PF00132 Bacterial transferase hexapeptide (six repeats) JOS67_04570 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JOS67_04575 PF02684 Lipid-A-disaccharide synthetase JOS67_04580 PF01351 Ribonuclease HII JOS67_04585 PF01336 OB-fold nucleic acid binding domain JOS67_04585 PF02811 PHP domain JOS67_04585 PF14579 Helix-hairpin-helix motif JOS67_04585 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JOS67_04585 PF07733 Bacterial DNA polymerase III alpha NTPase domain JOS67_04590 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JOS67_04595 PF01171 PP-loop family JOS67_04595 PF09179 TilS substrate binding domain JOS67_04595 PF11734 TilS substrate C-terminal domain JOS67_04600 PF00034 Cytochrome c JOS67_04605 PF00543 Nitrogen regulatory protein P-II JOS67_04610 PF03372 Endonuclease/Exonuclease/phosphatase family JOS67_04620 PF01464 Transglycosylase SLT domain JOS67_04620 PF01476 LysM domain JOS67_04625 PF00753 Metallo-beta-lactamase superfamily JOS67_04625 PF16123 Hydroxyacylglutathione hydrolase C-terminus JOS67_04630 PF08241 Methyltransferase domain JOS67_04635 PF00075 RNase H JOS67_04640 PF00929 Exonuclease JOS67_04665 PF01740 STAS domain JOS67_04665 PF00916 Sulfate permease family JOS67_04670 PF09317 Domain of unknown function (DUF1974) JOS67_04670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOS67_04670 PF02770 Acyl-CoA dehydrogenase, middle domain JOS67_04670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOS67_04675 PF13580 SIS domain JOS67_04680 PF13230 Glutamine amidotransferases class-II JOS67_04685 PF00551 Formyl transferase JOS67_04690 PF02769 AIR synthase related protein, C-terminal domain JOS67_04690 PF00586 AIR synthase related protein, N-terminal domain JOS67_04700 PF00860 Permease family JOS67_04715 PF03358 NADPH-dependent FMN reductase JOS67_04720 PF03960 ArsC family JOS67_04725 PF13181 Tetratricopeptide repeat JOS67_04725 PF01435 Peptidase family M48 JOS67_04735 PF01594 AI-2E family transporter JOS67_04740 PF00578 AhpC/TSA family JOS67_04750 PF00701 Dihydrodipicolinate synthetase family JOS67_04755 PF06804 NlpB/DapX lipoprotein JOS67_04770 PF01546 Peptidase family M20/M25/M40 JOS67_04770 PF07687 Peptidase dimerisation domain JOS67_04775 PF03960 ArsC family JOS67_04795 PF11143 Protein of unknown function (DUF2919) JOS67_04800 PF04261 Dyp-type peroxidase family JOS67_04805 PF00700 Bacterial flagellin C-terminal helical region JOS67_04805 PF07196 Flagellin hook IN motif JOS67_04805 PF00669 Bacterial flagellin N-terminal helical region JOS67_04810 PF00669 Bacterial flagellin N-terminal helical region JOS67_04810 PF07196 Flagellin hook IN motif JOS67_04810 PF00700 Bacterial flagellin C-terminal helical region JOS67_04815 PF00700 Bacterial flagellin C-terminal helical region JOS67_04815 PF00669 Bacterial flagellin N-terminal helical region JOS67_04815 PF07196 Flagellin hook IN motif JOS67_04820 PF03646 FlaG protein JOS67_04825 PF02465 Flagellar hook-associated protein 2 N-terminus JOS67_04825 PF07196 Flagellin hook IN motif JOS67_04825 PF07195 Flagellar hook-associated protein 2 C-terminus JOS67_04835 PF02561 Flagellar protein FliS JOS67_04840 PF00158 Sigma-54 interaction domain JOS67_04840 PF06490 Flagellar regulatory protein FleQ JOS67_04840 PF02954 Bacterial regulatory protein, Fis family JOS67_04845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_04845 PF00512 His Kinase A (phospho-acceptor) domain JOS67_04845 PF13188 PAS domain JOS67_04850 PF00158 Sigma-54 interaction domain JOS67_04850 PF00072 Response regulator receiver domain JOS67_04850 PF02954 Bacterial regulatory protein, Fis family JOS67_04855 PF02049 Flagellar hook-basal body complex protein FliE JOS67_04860 PF08345 Flagellar M-ring protein C-terminal JOS67_04860 PF01514 Secretory protein of YscJ/FliF family JOS67_04865 PF14842 FliG N-terminal domain JOS67_04865 PF14841 FliG middle domain JOS67_04865 PF01706 FliG C-terminal domain JOS67_04875 PF18269 T3SS EscN ATPase C-terminal domain JOS67_04875 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOS67_04895 PF02154 Flagellar motor switch protein FliM JOS67_04895 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JOS67_04900 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JOS67_04905 PF04347 Flagellar biosynthesis protein, FliO JOS67_04910 PF00813 FliP family JOS67_04915 PF01313 Bacterial export proteins, family 3 JOS67_04920 PF01311 Bacterial export proteins, family 1 JOS67_04925 PF01312 FlhB HrpN YscU SpaS Family JOS67_04930 PF00771 FHIPEP family JOS67_04935 PF00448 SRP54-type protein, GTPase domain JOS67_04940 PF10609 NUBPL iron-transfer P-loop NTPase JOS67_04945 PF04539 Sigma-70 region 3 JOS67_04945 PF04545 Sigma-70, region 4 JOS67_04945 PF04542 Sigma-70 region 2 JOS67_04950 PF00072 Response regulator receiver domain JOS67_04955 PF04344 Chemotaxis phosphatase, CheZ JOS67_04960 PF02895 Signal transducing histidine kinase, homodimeric domain JOS67_04960 PF00072 Response regulator receiver domain JOS67_04960 PF01627 Hpt domain JOS67_04960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_04960 PF01584 CheW-like domain JOS67_04965 PF00072 Response regulator receiver domain JOS67_04965 PF01339 CheB methylesterase JOS67_04970 PF13614 AAA domain JOS67_04980 PF01584 CheW-like domain JOS67_04990 PF00005 ABC transporter JOS67_04995 PF03379 CcmB protein JOS67_05000 PF01578 Cytochrome C assembly protein JOS67_05005 PF04995 Heme exporter protein D (CcmD) JOS67_05010 PF03100 CcmE JOS67_05015 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JOS67_05015 PF01578 Cytochrome C assembly protein JOS67_05020 PF08534 Redoxin JOS67_05025 PF03918 Cytochrome C biogenesis protein JOS67_05030 PF03918 Cytochrome C biogenesis protein JOS67_05035 PF04333 MlaA lipoprotein JOS67_05040 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JOS67_05045 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JOS67_05055 PF08281 Sigma-70, region 4 JOS67_05055 PF04542 Sigma-70 region 2 JOS67_05060 PF00108 Thiolase, N-terminal domain JOS67_05060 PF02803 Thiolase, C-terminal domain JOS67_05065 PF00378 Enoyl-CoA hydratase/isomerase JOS67_05065 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JOS67_05065 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JOS67_05075 PF16187 Middle or third domain of peptidase_M16 JOS67_05075 PF05193 Peptidase M16 inactive domain JOS67_05075 PF00675 Insulinase (Peptidase family M16) JOS67_05080 PF00300 Histidine phosphatase superfamily (branch 1) JOS67_05085 PF01713 Smr domain JOS67_05090 PF05175 Methyltransferase small domain JOS67_05095 PF01264 Chorismate synthase JOS67_05100 PF03458 UPF0126 domain JOS67_05105 PF04315 Elongation factor P hydroxylase JOS67_05110 PF08891 YfcL protein JOS67_05115 PF03358 NADPH-dependent FMN reductase JOS67_05120 PF01266 FAD dependent oxidoreductase JOS67_05120 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JOS67_05125 PF00109 Beta-ketoacyl synthase, N-terminal domain JOS67_05125 PF02801 Beta-ketoacyl synthase, C-terminal domain JOS67_05130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JOS67_05130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JOS67_05130 PF11890 Domain of unknown function (DUF3410) JOS67_05135 PF02774 Semialdehyde dehydrogenase, dimerisation domain JOS67_05135 PF01118 Semialdehyde dehydrogenase, NAD binding domain JOS67_05145 PF01416 tRNA pseudouridine synthase JOS67_05150 PF01039 Carboxyl transferase domain JOS67_05150 PF17848 Acetyl-coA carboxylase zinc finger domain JOS67_05155 PF08245 Mur ligase middle domain JOS67_05155 PF02875 Mur ligase family, glutamate ligase domain JOS67_05160 PF05036 Sporulation related domain JOS67_05165 PF02674 Colicin V production protein JOS67_05170 PF00156 Phosphoribosyl transferase domain JOS67_05175 PF03466 LysR substrate binding domain JOS67_05175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_05180 PF00072 Response regulator receiver domain JOS67_05185 PF04304 Protein of unknown function (DUF454) JOS67_05190 PF00156 Phosphoribosyl transferase domain JOS67_05195 PF12169 DNA polymerase III subunits gamma and tau domain III JOS67_05195 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JOS67_05195 PF12170 DNA polymerase III tau subunit V interacting with alpha JOS67_05200 PF02575 YbaB/EbfC DNA-binding family JOS67_05205 PF13662 Toprim domain JOS67_05205 PF02132 RecR protein JOS67_05210 PF00230 Major intrinsic protein JOS67_05220 PF01042 Endoribonuclease L-PSP JOS67_05225 PF03313 Serine dehydratase alpha chain JOS67_05235 PF03692 Putative zinc- or iron-chelating domain JOS67_05240 PF04226 Transglycosylase associated protein JOS67_05245 PF03692 Putative zinc- or iron-chelating domain JOS67_05250 PF00924 Mechanosensitive ion channel JOS67_05250 PF05552 Conserved TM helix JOS67_05255 PF13542 Helix-turn-helix domain of transposase family ISL3 JOS67_05255 PF01610 Transposase JOS67_05255 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JOS67_05260 PF03992 Antibiotic biosynthesis monooxygenase JOS67_05265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JOS67_05275 PF00245 Alkaline phosphatase JOS67_05290 PF13847 Methyltransferase domain JOS67_05295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_05295 PF00672 HAMP domain JOS67_05295 PF02743 Cache domain JOS67_05300 PF01263 Aldose 1-epimerase JOS67_05305 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JOS67_05305 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JOS67_05310 PF01641 SelR domain JOS67_05320 PF07023 Protein of unknown function (DUF1315) JOS67_05325 PF00710 Asparaginase, N-terminal JOS67_05325 PF17763 Glutaminase/Asparaginase C-terminal domain JOS67_05330 PF01343 Peptidase family S49 JOS67_05335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JOS67_05335 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_05345 PF00881 Nitroreductase family JOS67_05350 PF01751 Toprim domain JOS67_05350 PF01131 DNA topoisomerase JOS67_05360 PF00106 short chain dehydrogenase JOS67_05365 PF00850 Histone deacetylase domain JOS67_05375 PF11893 Domain of unknown function (DUF3413) JOS67_05375 PF00884 Sulfatase JOS67_05380 PF07208 Protein of unknown function (DUF1414) JOS67_05385 PF04245 37-kD nucleoid-associated bacterial protein JOS67_05400 PF03553 Na+/H+ antiporter family JOS67_05405 PF01118 Semialdehyde dehydrogenase, NAD binding domain JOS67_05405 PF02774 Semialdehyde dehydrogenase, dimerisation domain JOS67_05410 PF00520 Ion transport protein JOS67_05410 PF00027 Cyclic nucleotide-binding domain JOS67_05415 PF01914 MarC family integral membrane protein JOS67_05420 PF00465 Iron-containing alcohol dehydrogenase JOS67_05420 PF00171 Aldehyde dehydrogenase family JOS67_05435 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JOS67_05435 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JOS67_05440 PF00462 Glutaredoxin JOS67_05450 PF13726 Na+-H+ antiporter family JOS67_05450 PF03553 Na+/H+ antiporter family JOS67_05455 PF00929 Exonuclease JOS67_05460 PF00691 OmpA family JOS67_05460 PF18393 MotY N-terminal domain JOS67_05465 PF10952 Protein of unknown function (DUF2753) JOS67_05470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JOS67_05475 PF00633 Helix-hairpin-helix motif JOS67_05475 PF00730 HhH-GPD superfamily base excision DNA repair protein JOS67_05475 PF10576 Iron-sulfur binding domain of endonuclease III JOS67_05480 PF02508 Rnf-Nqr subunit, membrane protein JOS67_05485 PF04205 FMN-binding domain JOS67_05490 PF03116 NQR2, RnfD, RnfE family JOS67_05495 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JOS67_05495 PF10531 SLBB domain JOS67_05495 PF13375 RnfC Barrel sandwich hybrid domain JOS67_05495 PF12838 4Fe-4S dicluster domain JOS67_05500 PF04060 Putative Fe-S cluster JOS67_05505 PF02508 Rnf-Nqr subunit, membrane protein JOS67_05515 PF17757 UvrB interaction domain JOS67_05515 PF12344 Ultra-violet resistance protein B JOS67_05515 PF02151 UvrB/uvrC motif JOS67_05515 PF04851 Type III restriction enzyme, res subunit JOS67_05515 PF00271 Helicase conserved C-terminal domain JOS67_05520 PF00158 Sigma-54 interaction domain JOS67_05520 PF02954 Bacterial regulatory protein, Fis family JOS67_05520 PF00072 Response regulator receiver domain JOS67_05525 PF01627 Hpt domain JOS67_05530 PF01933 Uncharacterised protein family UPF0052 JOS67_05535 PF06463 Molybdenum Cofactor Synthesis C JOS67_05535 PF04055 Radical SAM superfamily JOS67_05540 PF00994 Probable molybdopterin binding domain JOS67_05545 PF01967 MoaC family JOS67_05550 PF02597 ThiS family JOS67_05555 PF02391 MoaE protein JOS67_05560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JOS67_05565 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_05570 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_05570 PF12911 N-terminal TM domain of oligopeptide transport permease C JOS67_05575 PF00005 ABC transporter JOS67_05575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS67_05580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS67_05580 PF00005 ABC transporter JOS67_05585 PF13409 Glutathione S-transferase, N-terminal domain JOS67_05595 PF13194 Domain of unknown function (DUF4010) JOS67_05600 PF07085 DRTGG domain JOS67_05600 PF01515 Phosphate acetyl/butaryl transferase JOS67_05605 PF00871 Acetokinase family JOS67_05610 PF04217 Protein of unknown function, DUF412 JOS67_05620 PF02653 Branched-chain amino acid transport system / permease component JOS67_05625 PF00005 ABC transporter JOS67_05630 PF00128 Alpha amylase, catalytic domain JOS67_05630 PF02903 Alpha amylase, N-terminal ig-like domain JOS67_05635 PF17158 Membrane-associated sensor, integral membrane domain JOS67_05635 PF00990 Diguanylate cyclase, GGDEF domain JOS67_05640 PF01207 Dihydrouridine synthase (Dus) JOS67_05645 PF07516 SecA Wing and Scaffold domain JOS67_05645 PF01043 SecA preprotein cross-linking domain JOS67_05645 PF07517 SecA DEAD-like domain JOS67_05645 PF02810 SEC-C motif JOS67_05650 PF02600 Disulfide bond formation protein DsbB JOS67_05655 PF06450 Bacterial Na+/H+ antiporter B (NhaB) JOS67_05660 PF00392 Bacterial regulatory proteins, gntR family JOS67_05660 PF07840 FadR C-terminal domain JOS67_05670 PF09334 tRNA synthetases class I (M) JOS67_05670 PF01588 Putative tRNA binding domain JOS67_05675 PF10609 NUBPL iron-transfer P-loop NTPase JOS67_05680 PF00485 Phosphoribulokinase / Uridine kinase family JOS67_05690 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JOS67_05690 PF12557 Cob(I)alamin adenosyltransferase N terminal JOS67_05695 PF01451 Low molecular weight phosphotyrosine protein phosphatase JOS67_05700 PF00916 Sulfate permease family JOS67_05700 PF01740 STAS domain JOS67_05705 PF00575 S1 RNA binding domain JOS67_05705 PF10150 Ribonuclease E/G family JOS67_05705 PF12111 Polyribonucleotide phosphorylase C terminal JOS67_05710 PF01479 S4 domain JOS67_05710 PF00849 RNA pseudouridylate synthase JOS67_05715 PF02545 Maf-like protein JOS67_05720 PF02620 Large ribosomal RNA subunit accumulation protein YceD JOS67_05725 PF01783 Ribosomal L32p protein family JOS67_05730 PF02504 Fatty acid synthesis protein JOS67_05735 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JOS67_05735 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JOS67_05740 PF00698 Acyl transferase domain JOS67_05750 PF00550 Phosphopantetheine attachment site JOS67_05755 PF02801 Beta-ketoacyl synthase, C-terminal domain JOS67_05755 PF00109 Beta-ketoacyl synthase, N-terminal domain JOS67_05760 PF01063 Amino-transferase class IV JOS67_05765 PF02618 YceG-like family JOS67_05770 PF02223 Thymidylate kinase JOS67_05775 PF09115 DNA polymerase III, delta subunit, C terminal JOS67_05780 PF01026 TatD related DNase JOS67_05785 PF02378 Phosphotransferase system, EIIC JOS67_05785 PF00367 phosphotransferase system, EIIB JOS67_05800 PF00209 Sodium:neurotransmitter symporter family JOS67_05815 PF01734 Patatin-like phospholipase JOS67_05820 PF02887 Pyruvate kinase, alpha/beta domain JOS67_05820 PF00224 Pyruvate kinase, barrel domain JOS67_05825 PF00480 ROK family JOS67_05830 PF00072 Response regulator receiver domain JOS67_05830 PF01584 CheW-like domain JOS67_05835 PF07733 Bacterial DNA polymerase III alpha NTPase domain JOS67_05835 PF02811 PHP domain JOS67_05835 PF01336 OB-fold nucleic acid binding domain JOS67_05835 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JOS67_05835 PF14579 Helix-hairpin-helix motif JOS67_05850 PF00106 short chain dehydrogenase JOS67_05855 PF01343 Peptidase family S49 JOS67_05855 PF08496 Peptidase family S49 N-terminal JOS67_05860 PF02224 Cytidylate kinase JOS67_05865 PF00575 S1 RNA binding domain JOS67_05870 PF00216 Bacterial DNA-binding protein JOS67_05875 PF06305 Lipopolysaccharide assembly protein A domain JOS67_05880 PF18073 Rubredoxin metal binding domain JOS67_05885 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JOS67_05890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JOS67_05905 PF02470 MlaD protein JOS67_05910 PF04403 Paraquat-inducible protein A JOS67_05915 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JOS67_05920 PF00034 Cytochrome c JOS67_05925 PF00384 Molybdopterin oxidoreductase JOS67_05925 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JOS67_05925 PF01568 Molydopterin dinucleotide binding domain JOS67_05930 PF03916 Polysulphide reductase, NrfD JOS67_05935 PF13247 4Fe-4S dicluster domain JOS67_05940 PF00512 His Kinase A (phospho-acceptor) domain JOS67_05940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_05945 PF00072 Response regulator receiver domain JOS67_05945 PF00196 Bacterial regulatory proteins, luxR family JOS67_05955 PF11412 Disulphide bond corrector protein DsbC JOS67_05955 PF02683 Cytochrome C biogenesis protein transmembrane region JOS67_05960 PF00085 Thioredoxin JOS67_05975 PF05958 tRNA (Uracil-5-)-methyltransferase JOS67_05990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_06000 PF12704 MacB-like periplasmic core domain JOS67_06000 PF00005 ABC transporter JOS67_06000 PF02687 FtsX-like permease family JOS67_06005 PF12704 MacB-like periplasmic core domain JOS67_06005 PF02687 FtsX-like permease family JOS67_06005 PF00005 ABC transporter JOS67_06010 PF02687 FtsX-like permease family JOS67_06010 PF12704 MacB-like periplasmic core domain JOS67_06010 PF00005 ABC transporter JOS67_06030 PF08267 Cobalamin-independent synthase, N-terminal domain JOS67_06030 PF01717 Cobalamin-independent synthase, Catalytic domain JOS67_06040 PF00529 HlyD membrane-fusion protein of T1SS JOS67_06040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_06045 PF03466 LysR substrate binding domain JOS67_06045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_06060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_06060 PF00672 HAMP domain JOS67_06060 PF00512 His Kinase A (phospho-acceptor) domain JOS67_06065 PF00072 Response regulator receiver domain JOS67_06065 PF00486 Transcriptional regulatory protein, C terminal JOS67_06070 PF00672 HAMP domain JOS67_06070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_06085 PF08497 Radical SAM N-terminal JOS67_06085 PF11842 Domain of unknown function (DUF3362) JOS67_06085 PF04055 Radical SAM superfamily JOS67_06105 PF03466 LysR substrate binding domain JOS67_06105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_06110 PF01717 Cobalamin-independent synthase, Catalytic domain JOS67_06110 PF08267 Cobalamin-independent synthase, N-terminal domain JOS67_06120 PF03795 YCII-related domain JOS67_06125 PF03061 Thioesterase superfamily JOS67_06130 PF04279 Intracellular septation protein A JOS67_06140 PF00072 Response regulator receiver domain JOS67_06140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_06145 PF17327 Acyl homoserine lactone synthase JOS67_06150 PF00375 Sodium:dicarboxylate symporter family JOS67_06155 PF13193 AMP-binding enzyme C-terminal domain JOS67_06155 PF00501 AMP-binding enzyme JOS67_06160 PF00027 Cyclic nucleotide-binding domain JOS67_06160 PF13545 Crp-like helix-turn-helix domain JOS67_06165 PF00290 Tryptophan synthase alpha chain JOS67_06170 PF00291 Pyridoxal-phosphate dependent enzyme JOS67_06175 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JOS67_06175 PF00218 Indole-3-glycerol phosphate synthase JOS67_06180 PF00591 Glycosyl transferase family, a/b domain JOS67_06180 PF02885 Glycosyl transferase family, helical bundle domain JOS67_06185 PF00117 Glutamine amidotransferase class-I JOS67_06190 PF00425 chorismate binding enzyme JOS67_06190 PF04715 Anthranilate synthase component I, N terminal region JOS67_06195 PF08056 Tryptophan operon leader peptide JOS67_06200 PF02811 PHP domain JOS67_06205 PF01300 Telomere recombination JOS67_06215 PF00849 RNA pseudouridylate synthase JOS67_06215 PF01479 S4 domain JOS67_06220 PF04269 Protein of unknown function, DUF440 JOS67_06225 PF08207 Elongation factor P (EF-P) KOW-like domain JOS67_06225 PF09285 Elongation factor P, C-terminal JOS67_06225 PF01132 Elongation factor P (EF-P) OB domain JOS67_06235 PF03104 DNA polymerase family B, exonuclease domain JOS67_06235 PF00136 DNA polymerase family B JOS67_06240 PF00196 Bacterial regulatory proteins, luxR family JOS67_06240 PF00072 Response regulator receiver domain JOS67_06245 PF08459 UvrC Helix-hairpin-helix N-terminal JOS67_06245 PF01541 GIY-YIG catalytic domain JOS67_06245 PF02151 UvrB/uvrC motif JOS67_06250 PF01066 CDP-alcohol phosphatidyltransferase JOS67_06275 PF00202 Aminotransferase class-III JOS67_06280 PF16653 Saccharopine dehydrogenase C-terminal domain JOS67_06280 PF03435 Saccharopine dehydrogenase NADP binding domain JOS67_06285 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JOS67_06300 PF00994 Probable molybdopterin binding domain JOS67_06310 PF00268 Ribonucleotide reductase, small chain JOS67_06315 PF02867 Ribonucleotide reductase, barrel domain JOS67_06315 PF03477 ATP cone domain JOS67_06315 PF00317 Ribonucleotide reductase, all-alpha domain JOS67_06325 PF00521 DNA gyrase/topoisomerase IV, subunit A JOS67_06325 PF03989 DNA gyrase C-terminal domain, beta-propeller JOS67_06340 PF02335 Cytochrome c552 JOS67_06350 PF13247 4Fe-4S dicluster domain JOS67_06355 PF03916 Polysulphide reductase, NrfD JOS67_06360 PF01578 Cytochrome C assembly protein JOS67_06360 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JOS67_06365 PF08534 Redoxin JOS67_06370 PF03918 Cytochrome C biogenesis protein JOS67_06380 PF00925 GTP cyclohydrolase II JOS67_06405 PF01471 Putative peptidoglycan binding domain JOS67_06405 PF03734 L,D-transpeptidase catalytic domain JOS67_06410 PF05951 Bacterial protein of unknown function (DUF882) JOS67_06415 PF00753 Metallo-beta-lactamase superfamily JOS67_06430 PF03480 Bacterial extracellular solute-binding protein, family 7 JOS67_06440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JOS67_06445 PF07730 Histidine kinase JOS67_06445 PF17200 Single Cache domain 2 JOS67_06450 PF00072 Response regulator receiver domain JOS67_06450 PF00196 Bacterial regulatory proteins, luxR family JOS67_06460 PF02028 BCCT, betaine/carnitine/choline family transporter JOS67_06465 PF00672 HAMP domain JOS67_06465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_06485 PF00155 Aminotransferase class I and II JOS67_06500 PF00392 Bacterial regulatory proteins, gntR family JOS67_06500 PF00155 Aminotransferase class I and II JOS67_06510 PF00152 tRNA synthetases class II (D, K and N) JOS67_06510 PF01336 OB-fold nucleic acid binding domain JOS67_06515 PF17200 Single Cache domain 2 JOS67_06515 PF00672 HAMP domain JOS67_06515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_06520 PF01242 6-pyruvoyl tetrahydropterin synthase JOS67_06535 PF03313 Serine dehydratase alpha chain JOS67_06535 PF03315 Serine dehydratase beta chain JOS67_06540 PF03222 Tryptophan/tyrosine permease family JOS67_06545 PF00293 NUDIX domain JOS67_06555 PF00072 Response regulator receiver domain JOS67_06555 PF09308 LuxQ, periplasmic JOS67_06555 PF00512 His Kinase A (phospho-acceptor) domain JOS67_06555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_06560 PF00425 chorismate binding enzyme JOS67_06560 PF04715 Anthranilate synthase component I, N terminal region JOS67_06575 PF04317 YcjX-like family, DUF463 JOS67_06580 PF05128 Domain of unknown function (DUF697) JOS67_06585 PF00158 Sigma-54 interaction domain JOS67_06585 PF18024 Helix-turn-helix domain JOS67_06590 PF13302 Acetyltransferase (GNAT) domain JOS67_06605 PF13495 Phage integrase, N-terminal SAM-like domain JOS67_06605 PF00589 Phage integrase family JOS67_06640 PF13614 AAA domain JOS67_06660 PF10531 SLBB domain JOS67_06695 PF01609 Transposase DDE domain JOS67_06695 PF13808 DDE_Tnp_1-associated JOS67_06715 PF13737 Transposase DDE domain JOS67_06720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_06720 PF03466 LysR substrate binding domain JOS67_06735 PF13737 Transposase DDE domain JOS67_06745 PF08240 Alcohol dehydrogenase GroES-like domain JOS67_06745 PF00107 Zinc-binding dehydrogenase JOS67_06755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_06755 PF03466 LysR substrate binding domain JOS67_06770 PF03466 LysR substrate binding domain JOS67_06770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_06775 PF03358 NADPH-dependent FMN reductase JOS67_06780 PF00210 Ferritin-like domain JOS67_06785 PF13409 Glutathione S-transferase, N-terminal domain JOS67_06790 PF01323 DSBA-like thioredoxin domain JOS67_06805 PF08241 Methyltransferase domain JOS67_06810 PF17243 POTRA domain TamA domain 1 JOS67_06810 PF07244 Surface antigen variable number repeat JOS67_06810 PF01103 Surface antigen JOS67_06815 PF13091 PLD-like domain JOS67_06820 PF00135 Carboxylesterase family JOS67_06835 PF13533 Biotin-lipoyl like JOS67_06845 PF02080 TrkA-C domain JOS67_06845 PF06826 Predicted Permease Membrane Region JOS67_06850 PF00155 Aminotransferase class I and II JOS67_06855 PF08543 Phosphomethylpyrimidine kinase JOS67_06870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_06870 PF03466 LysR substrate binding domain JOS67_06885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_06900 PF00989 PAS fold JOS67_06900 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JOS67_06900 PF17203 Single cache domain 3 JOS67_06900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_06905 PF00072 Response regulator receiver domain JOS67_06905 PF12431 Transcriptional regulator JOS67_06910 PF07715 TonB-dependent Receptor Plug Domain JOS67_06910 PF00593 TonB dependent receptor JOS67_06915 PF12833 Helix-turn-helix domain JOS67_06920 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JOS67_06920 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JOS67_06925 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JOS67_06930 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JOS67_06930 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JOS67_06950 PF01590 GAF domain JOS67_06950 PF02954 Bacterial regulatory protein, Fis family JOS67_06950 PF00158 Sigma-54 interaction domain JOS67_06955 PF00171 Aldehyde dehydrogenase family JOS67_06975 PF12833 Helix-turn-helix domain JOS67_06990 PF00263 Bacterial type II and III secretion system protein JOS67_06990 PF03958 Bacterial type II/III secretion system short domain JOS67_06995 PF16697 Inner membrane component of T3SS, cytoplasmic domain JOS67_06995 PF16693 Inner membrane component of T3SS, periplasmic domain JOS67_07005 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF JOS67_07010 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) JOS67_07020 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI JOS67_07025 PF01514 Secretory protein of YscJ/FliF family JOS67_07035 PF02108 Flagellar assembly protein FliH JOS67_07045 PF02661 Fic/DOC family JOS67_07090 PF13533 Biotin-lipoyl like JOS67_07100 PF00440 Bacterial regulatory proteins, tetR family JOS67_07100 PF08360 QacR-like protein, C-terminal region JOS67_07105 PF01312 FlhB HrpN YscU SpaS Family JOS67_07110 PF01311 Bacterial export proteins, family 1 JOS67_07115 PF01313 Bacterial export proteins, family 3 JOS67_07120 PF00813 FliP family JOS67_07125 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JOS67_07140 PF02874 ATP synthase alpha/beta family, beta-barrel domain JOS67_07140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOS67_07140 PF18269 T3SS EscN ATPase C-terminal domain JOS67_07150 PF09059 TyeA JOS67_07170 PF00771 FHIPEP family JOS67_07175 PF09621 Type III secretion system regulator (LcrR) JOS67_07190 PF07720 Tetratricopeptide repeat JOS67_07200 PF05844 YopD protein JOS67_07205 PF16868 NMT1-like family JOS67_07210 PF01925 Sulfite exporter TauE/SafE JOS67_07220 PF01970 Tripartite tricarboxylate transporter TctA family JOS67_07250 PF00285 Citrate synthase, C-terminal domain JOS67_07255 PF00330 Aconitase family (aconitate hydratase) JOS67_07255 PF00694 Aconitase C-terminal domain JOS67_07260 PF04303 PrpF protein JOS67_07265 PF13193 AMP-binding enzyme C-terminal domain JOS67_07265 PF16177 Acetyl-coenzyme A synthetase N-terminus JOS67_07265 PF00501 AMP-binding enzyme JOS67_07275 PF00089 Trypsin JOS67_07290 PF04055 Radical SAM superfamily JOS67_07295 PF06508 Queuosine biosynthesis protein QueC JOS67_07300 PF07694 5TMR of 5TMR-LYT JOS67_07300 PF00990 Diguanylate cyclase, GGDEF domain JOS67_07310 PF05736 OprF membrane domain JOS67_07310 PF00691 OmpA family JOS67_07325 PF13808 DDE_Tnp_1-associated JOS67_07325 PF01609 Transposase DDE domain JOS67_07335 PF00691 OmpA family JOS67_07335 PF05736 OprF membrane domain JOS67_07350 PF17785 PUA-like domain JOS67_07350 PF10672 S-adenosylmethionine-dependent methyltransferase JOS67_07355 PF12729 Four helix bundle sensory module for signal transduction JOS67_07355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_07355 PF00672 HAMP domain JOS67_07360 PF00708 Acylphosphatase JOS67_07365 PF04358 DsrC like protein JOS67_07375 PF01027 Inhibitor of apoptosis-promoting Bax1 JOS67_07380 PF00005 ABC transporter JOS67_07385 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_07390 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_07400 PF00497 Bacterial extracellular solute-binding proteins, family 3 JOS67_07405 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JOS67_07405 PF14824 Sirohaem biosynthesis protein central JOS67_07405 PF10414 Sirohaem synthase dimerisation region JOS67_07410 PF04461 Protein of unknown function (DUF520) JOS67_07415 PF00793 DAHP synthetase I family JOS67_07435 PF01189 16S rRNA methyltransferase RsmB/F JOS67_07435 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JOS67_07435 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JOS67_07440 PF02470 MlaD protein JOS67_07445 PF04403 Paraquat-inducible protein A JOS67_07450 PF00005 ABC transporter JOS67_07450 PF00664 ABC transporter transmembrane region JOS67_07455 PF13185 GAF domain JOS67_07460 PF04352 ProQ/FINO family JOS67_07460 PF17516 ProQ C-terminal domain JOS67_07465 PF03572 Peptidase family S41 JOS67_07465 PF11818 C-terminal domain of tail specific protease (DUF3340) JOS67_07465 PF17804 Tail specific protease N-terminal domain JOS67_07465 PF00595 PDZ domain JOS67_07475 PF11940 Domain of unknown function (DUF3458) Ig-like fold JOS67_07475 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JOS67_07475 PF01433 Peptidase family M1 domain JOS67_07485 PF05088 Bacterial NAD-glutamate dehydrogenase JOS67_07490 PF01180 Dihydroorotate dehydrogenase JOS67_07495 PF07126 Cell-division protein ZapC JOS67_07500 PF02926 THUMP domain JOS67_07500 PF10672 S-adenosylmethionine-dependent methyltransferase JOS67_07500 PF01170 Putative RNA methylase family UPF0020 JOS67_07510 PF16326 ABC transporter C-terminal domain JOS67_07510 PF00005 ABC transporter JOS67_07510 PF12848 ABC transporter JOS67_07520 PF04957 Ribosome modulation factor JOS67_07525 PF07977 FabA-like domain JOS67_07530 PF13654 AAA domain JOS67_07530 PF05362 Lon protease (S16) C-terminal proteolytic domain JOS67_07535 PF06303 MatP N-terminal domain JOS67_07535 PF17414 MatP C-terminal ribbon-helix-helix domain JOS67_07555 PF00072 Response regulator receiver domain JOS67_07555 PF09308 LuxQ, periplasmic JOS67_07555 PF00512 His Kinase A (phospho-acceptor) domain JOS67_07555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_07570 PF00115 Cytochrome C and Quinol oxidase polypeptide I JOS67_07585 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JOS67_07585 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JOS67_07595 PF00403 Heavy-metal-associated domain JOS67_07610 PF00027 Cyclic nucleotide-binding domain JOS67_07610 PF13545 Crp-like helix-turn-helix domain JOS67_07615 PF00582 Universal stress protein family JOS67_07620 PF01171 PP-loop family JOS67_07640 PF00005 ABC transporter JOS67_07640 PF08402 TOBE domain JOS67_07645 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_07650 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_07655 PF13416 Bacterial extracellular solute-binding protein JOS67_07660 PF13416 Bacterial extracellular solute-binding protein JOS67_07665 PF02146 Sir2 family JOS67_07675 PF00909 Ammonium Transporter Family JOS67_07685 PF03527 RHS protein JOS67_07685 PF05593 RHS Repeat JOS67_07700 PF13247 4Fe-4S dicluster domain JOS67_07705 PF00384 Molybdopterin oxidoreductase JOS67_07705 PF01568 Molydopterin dinucleotide binding domain JOS67_07705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JOS67_07715 PF02613 Nitrate reductase delta subunit JOS67_07735 PF02634 FdhD/NarQ family JOS67_07740 PF12848 ABC transporter JOS67_07740 PF00005 ABC transporter JOS67_07745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_07745 PF00512 His Kinase A (phospho-acceptor) domain JOS67_07750 PF02954 Bacterial regulatory protein, Fis family JOS67_07750 PF00158 Sigma-54 interaction domain JOS67_07750 PF00072 Response regulator receiver domain JOS67_07755 PF12849 PBP superfamily domain JOS67_07760 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_07765 PF08402 TOBE domain JOS67_07765 PF00005 ABC transporter JOS67_07770 PF12804 MobA-like NTP transferase domain JOS67_07775 PF03453 MoeA N-terminal region (domain I and II) JOS67_07775 PF03454 MoeA C-terminal region (domain IV) JOS67_07775 PF00994 Probable molybdopterin binding domain JOS67_07785 PF00480 ROK family JOS67_07790 PF03942 DTW domain JOS67_07820 PF00672 HAMP domain JOS67_07820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_07820 PF12729 Four helix bundle sensory module for signal transduction JOS67_07825 PF00877 NlpC/P60 family JOS67_07835 PF05230 MASE2 domain JOS67_07835 PF00990 Diguanylate cyclase, GGDEF domain JOS67_07840 PF01339 CheB methylesterase JOS67_07840 PF00072 Response regulator receiver domain JOS67_07845 PF03881 Fructosamine kinase JOS67_07855 PF00677 Lumazine binding domain JOS67_07860 PF01554 MatE JOS67_07870 PF01068 ATP dependent DNA ligase domain JOS67_07870 PF14743 DNA ligase OB-like domain JOS67_07875 PF01740 STAS domain JOS67_07885 PF02563 Polysaccharide biosynthesis/export protein JOS67_07885 PF10531 SLBB domain JOS67_07900 PF02954 Bacterial regulatory protein, Fis family JOS67_07900 PF00072 Response regulator receiver domain JOS67_07900 PF00158 Sigma-54 interaction domain JOS67_07905 PF00534 Glycosyl transferases group 1 JOS67_07905 PF13439 Glycosyltransferase Family 4 JOS67_07910 PF13439 Glycosyltransferase Family 4 JOS67_07910 PF00534 Glycosyl transferases group 1 JOS67_07940 PF00534 Glycosyl transferases group 1 JOS67_07940 PF13439 Glycosyltransferase Family 4 JOS67_07950 PF02397 Bacterial sugar transferase JOS67_07960 PF02028 BCCT, betaine/carnitine/choline family transporter JOS67_07975 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JOS67_07975 PF04408 Helicase associated domain (HA2) JOS67_07975 PF00271 Helicase conserved C-terminal domain JOS67_07975 PF00270 DEAD/DEAH box helicase JOS67_07975 PF11898 Domain of unknown function (DUF3418) JOS67_07980 PF02525 Flavodoxin-like fold JOS67_08015 PF00990 Diguanylate cyclase, GGDEF domain JOS67_08025 PF00012 Hsp70 protein JOS67_08030 PF00012 Hsp70 protein JOS67_08050 PF08334 Type II secretion system (T2SS), protein G JOS67_08050 PF07963 Prokaryotic N-terminal methylation motif JOS67_08055 PF00005 ABC transporter JOS67_08055 PF00664 ABC transporter transmembrane region JOS67_08060 PF00664 ABC transporter transmembrane region JOS67_08060 PF00005 ABC transporter JOS67_08070 PF00593 TonB dependent receptor JOS67_08070 PF07715 TonB-dependent Receptor Plug Domain JOS67_08075 PF01032 FecCD transport family JOS67_08080 PF01497 Periplasmic binding protein JOS67_08085 PF00005 ABC transporter JOS67_08100 PF03222 Tryptophan/tyrosine permease family JOS67_08105 PF00465 Iron-containing alcohol dehydrogenase JOS67_08110 PF01966 HD domain JOS67_08120 PF03741 Integral membrane protein TerC family JOS67_08130 PF04055 Radical SAM superfamily JOS67_08135 PF11230 Protein of unknown function (DUF3029) JOS67_08140 PF01810 LysE type translocator JOS67_08145 PF01966 HD domain JOS67_08145 PF11871 Domain of unknown function (DUF3391) JOS67_08150 PF00563 EAL domain JOS67_08150 PF03707 Bacterial signalling protein N terminal repeat JOS67_08150 PF00990 Diguanylate cyclase, GGDEF domain JOS67_08155 PF00072 Response regulator receiver domain JOS67_08155 PF02954 Bacterial regulatory protein, Fis family JOS67_08155 PF00158 Sigma-54 interaction domain JOS67_08160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_08160 PF00512 His Kinase A (phospho-acceptor) domain JOS67_08165 PF00939 Sodium:sulfate symporter transmembrane region JOS67_08185 PF08448 PAS fold JOS67_08185 PF00990 Diguanylate cyclase, GGDEF domain JOS67_08190 PF03928 Haem-degrading JOS67_08195 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JOS67_08195 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JOS67_08200 PF00455 DeoR C terminal sensor domain JOS67_08200 PF08220 DeoR-like helix-turn-helix domain JOS67_08215 PF04055 Radical SAM superfamily JOS67_08215 PF13186 Iron-sulfur cluster-binding domain JOS67_08220 PF03781 Sulfatase-modifying factor enzyme 1 JOS67_08230 PF00884 Sulfatase JOS67_08235 PF13840 ACT domain JOS67_08235 PF00696 Amino acid kinase family JOS67_08240 PF06339 Ectoine synthase JOS67_08245 PF00202 Aminotransferase class-III JOS67_08250 PF00583 Acetyltransferase (GNAT) family JOS67_08255 PF02028 BCCT, betaine/carnitine/choline family transporter JOS67_08270 PF00571 CBS domain JOS67_08270 PF00005 ABC transporter JOS67_08275 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_08280 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JOS67_08290 PF00501 AMP-binding enzyme JOS67_08310 PF00072 Response regulator receiver domain JOS67_08310 PF00486 Transcriptional regulatory protein, C terminal JOS67_08315 PF08521 Two-component sensor kinase N-terminal JOS67_08315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_08315 PF00512 His Kinase A (phospho-acceptor) domain JOS67_08320 PF00884 Sulfatase JOS67_08345 PF01235 Sodium:alanine symporter family JOS67_08355 PF01810 LysE type translocator JOS67_08360 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JOS67_08365 PF03279 Bacterial lipid A biosynthesis acyltransferase JOS67_08370 PF13520 Amino acid permease JOS67_08375 PF00893 Small Multidrug Resistance protein JOS67_08385 PF04204 Homoserine O-succinyltransferase JOS67_08400 PF03707 Bacterial signalling protein N terminal repeat JOS67_08400 PF00563 EAL domain JOS67_08400 PF00990 Diguanylate cyclase, GGDEF domain JOS67_08405 PF00672 HAMP domain JOS67_08405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_08405 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JOS67_08405 PF00512 His Kinase A (phospho-acceptor) domain JOS67_08405 PF01627 Hpt domain JOS67_08405 PF00072 Response regulator receiver domain JOS67_08420 PF12464 Maltose acetyltransferase JOS67_08420 PF00132 Bacterial transferase hexapeptide (six repeats) JOS67_08435 PF04237 YjbR JOS67_08440 PF01047 MarR family JOS67_08445 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JOS67_08445 PF13542 Helix-turn-helix domain of transposase family ISL3 JOS67_08445 PF01610 Transposase JOS67_08455 PF00196 Bacterial regulatory proteins, luxR family JOS67_08455 PF00563 EAL domain JOS67_08490 PF14497 Glutathione S-transferase, C-terminal domain JOS67_08490 PF02798 Glutathione S-transferase, N-terminal domain JOS67_08500 PF04209 homogentisate 1,2-dioxygenase JOS67_08505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JOS67_08510 PF01546 Peptidase family M20/M25/M40 JOS67_08510 PF07687 Peptidase dimerisation domain JOS67_08515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JOS67_08520 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_08525 PF12911 N-terminal TM domain of oligopeptide transport permease C JOS67_08525 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_08530 PF00005 ABC transporter JOS67_08530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS67_08535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS67_08535 PF00005 ABC transporter JOS67_08545 PF08453 Peptidase family M9 N-terminal JOS67_08545 PF01752 Collagenase JOS67_08560 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_08565 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_08570 PF00005 ABC transporter JOS67_08570 PF08402 TOBE domain JOS67_08575 PF00701 Dihydrodipicolinate synthetase family JOS67_08580 PF02423 Ornithine cyclodeaminase/mu-crystallin family JOS67_08590 PF01266 FAD dependent oxidoreductase JOS67_08590 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JOS67_08595 PF05544 Proline racemase JOS67_08600 PF00171 Aldehyde dehydrogenase family JOS67_08605 PF00392 Bacterial regulatory proteins, gntR family JOS67_08625 PF05971 RNA methyltransferase JOS67_08630 PF01863 Protein of unknown function DUF45 JOS67_08640 PF03466 LysR substrate binding domain JOS67_08640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_08660 PF00005 ABC transporter JOS67_08665 PF01032 FecCD transport family JOS67_08670 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JOS67_08685 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JOS67_08690 PF02654 Cobalamin-5-phosphate synthase JOS67_08695 PF02277 Phosphoribosyltransferase JOS67_08705 PF00375 Sodium:dicarboxylate symporter family JOS67_08710 PF08411 Exonuclease C-terminal JOS67_08710 PF00929 Exonuclease JOS67_08715 PF03788 LrgA family JOS67_08720 PF04172 LrgB-like family JOS67_08725 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region JOS67_08725 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JOS67_08730 PF02222 ATP-grasp domain JOS67_08735 PF05724 Thiopurine S-methyltransferase (TPMT) JOS67_08745 PF00216 Bacterial DNA-binding protein JOS67_08755 PF03147 Ferredoxin-fold anticodon binding domain JOS67_08755 PF03483 B3/4 domain JOS67_08755 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JOS67_08755 PF01588 Putative tRNA binding domain JOS67_08755 PF03484 tRNA synthetase B5 domain JOS67_08760 PF01409 tRNA synthetases class II core domain (F) JOS67_08760 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JOS67_08790 PF01906 Putative heavy-metal-binding JOS67_08795 PF00453 Ribosomal protein L20 JOS67_08800 PF01632 Ribosomal protein L35 JOS67_08805 PF00707 Translation initiation factor IF-3, C-terminal domain JOS67_08805 PF05198 Translation initiation factor IF-3, N-terminal domain JOS67_08810 PF02824 TGS domain JOS67_08810 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JOS67_08810 PF03129 Anticodon binding domain JOS67_08810 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JOS67_08825 PF00392 Bacterial regulatory proteins, gntR family JOS67_08825 PF07702 UTRA domain JOS67_08830 PF01979 Amidohydrolase family JOS67_08835 PF00491 Arginase family JOS67_08840 PF01175 Urocanase Rossmann-like domain JOS67_08840 PF17392 Urocanase C-terminal domain JOS67_08840 PF17391 Urocanase N-terminal domain JOS67_08845 PF00221 Aromatic amino acid lyase JOS67_08860 PF02913 FAD linked oxidases, C-terminal domain JOS67_08860 PF01565 FAD binding domain JOS67_08860 PF13183 4Fe-4S dicluster domain JOS67_08875 PF00691 OmpA family JOS67_08875 PF05736 OprF membrane domain JOS67_08895 PF01259 SAICAR synthetase JOS67_08900 PF09423 PhoD-like phosphatase JOS67_08900 PF16655 PhoD-like phosphatase, N-terminal domain JOS67_08910 PF08482 ATP-dependent helicase C-terminal JOS67_08910 PF00271 Helicase conserved C-terminal domain JOS67_08910 PF04408 Helicase associated domain (HA2) JOS67_08910 PF00270 DEAD/DEAH box helicase JOS67_08915 PF00390 Malic enzyme, N-terminal domain JOS67_08915 PF03949 Malic enzyme, NAD binding domain JOS67_08920 PF02698 DUF218 domain JOS67_08925 PF00939 Sodium:sulfate symporter transmembrane region JOS67_08930 PF00990 Diguanylate cyclase, GGDEF domain JOS67_08930 PF00072 Response regulator receiver domain JOS67_08940 PF00266 Aminotransferase class-V JOS67_08950 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_08955 PF00005 ABC transporter JOS67_08955 PF00664 ABC transporter transmembrane region JOS67_08960 PF00005 ABC transporter JOS67_08960 PF00664 ABC transporter transmembrane region JOS67_08965 PF00291 Pyridoxal-phosphate dependent enzyme JOS67_08970 PF00266 Aminotransferase class-V JOS67_08980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_08980 PF00512 His Kinase A (phospho-acceptor) domain JOS67_08980 PF00497 Bacterial extracellular solute-binding proteins, family 3 JOS67_08995 PF04994 TfoX C-terminal domain JOS67_08995 PF04993 TfoX N-terminal domain JOS67_09005 PF03956 Lysine exporter LysO JOS67_09015 PF00282 Pyridoxal-dependent decarboxylase conserved domain JOS67_09020 PF01418 Helix-turn-helix domain, rpiR family JOS67_09020 PF01380 SIS domain JOS67_09025 PF00465 Iron-containing alcohol dehydrogenase JOS67_09030 PF00462 Glutaredoxin JOS67_09035 PF06826 Predicted Permease Membrane Region JOS67_09035 PF02080 TrkA-C domain JOS67_09040 PF07055 Enoyl reductase FAD binding domain JOS67_09040 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JOS67_09040 PF12241 Trans-2-enoyl-CoA reductase catalytic region JOS67_09045 PF02770 Acyl-CoA dehydrogenase, middle domain JOS67_09045 PF09317 Domain of unknown function (DUF1974) JOS67_09045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOS67_09045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOS67_09050 PF00440 Bacterial regulatory proteins, tetR family JOS67_09050 PF16295 Tetracyclin repressor-like, C-terminal domain JOS67_09055 PF06965 Na+/H+ antiporter 1 JOS67_09070 PF00005 ABC transporter JOS67_09075 PF01554 MatE JOS67_09080 PF11066 Protein of unknown function (DUF2867) JOS67_09080 PF13460 NAD(P)H-binding JOS67_09085 PF03264 NapC/NirT cytochrome c family, N-terminal region JOS67_09100 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) JOS67_09105 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB JOS67_09115 PF07690 Major Facilitator Superfamily JOS67_09120 PF01479 S4 domain JOS67_09120 PF00849 RNA pseudouridylate synthase JOS67_09125 PF00271 Helicase conserved C-terminal domain JOS67_09125 PF04851 Type III restriction enzyme, res subunit JOS67_09135 PF00072 Response regulator receiver domain JOS67_09135 PF00486 Transcriptional regulatory protein, C terminal JOS67_09140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_09145 PF01386 Ribosomal L25p family JOS67_09150 PF00583 Acetyltransferase (GNAT) family JOS67_09155 PF00149 Calcineurin-like phosphoesterase JOS67_09155 PF02872 5'-nucleotidase, C-terminal domain JOS67_09165 PF06945 Protein of unknown function (DUF1289) JOS67_09175 PF13416 Bacterial extracellular solute-binding protein JOS67_09180 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_09185 PF00005 ABC transporter JOS67_09190 PF01066 CDP-alcohol phosphatidyltransferase JOS67_09200 PF00158 Sigma-54 interaction domain JOS67_09200 PF01590 GAF domain JOS67_09205 PF03063 Prismane/CO dehydrogenase family JOS67_09210 PF00175 Oxidoreductase NAD-binding domain JOS67_09210 PF00970 Oxidoreductase FAD-binding domain JOS67_09210 PF00111 2Fe-2S iron-sulfur cluster binding domain JOS67_09220 PF00849 RNA pseudouridylate synthase JOS67_09225 PF00209 Sodium:neurotransmitter symporter family JOS67_09230 PF13396 Phospholipase_D-nuclease N-terminal JOS67_09230 PF13091 PLD-like domain JOS67_09235 PF01053 Cys/Met metabolism PLP-dependent enzyme JOS67_09240 PF00561 alpha/beta hydrolase fold JOS67_09245 PF03280 Proteobacterial lipase chaperone protein JOS67_09250 PF03352 Methyladenine glycosylase JOS67_09255 PF00873 AcrB/AcrD/AcrF family JOS67_09260 PF13533 Biotin-lipoyl like JOS67_09270 PF04024 PspC domain JOS67_09275 PF06667 Phage shock protein B JOS67_09280 PF04012 PspA/IM30 family JOS67_09285 PF02954 Bacterial regulatory protein, Fis family JOS67_09285 PF00158 Sigma-54 interaction domain JOS67_09290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JOS67_09295 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_09300 PF12911 N-terminal TM domain of oligopeptide transport permease C JOS67_09300 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_09305 PF00005 ABC transporter JOS67_09305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS67_09310 PF00005 ABC transporter JOS67_09320 PF01368 DHH family JOS67_09320 PF02833 DHHA2 domain JOS67_09330 PF16875 Glycosyl hydrolase family 36 N-terminal domain JOS67_09330 PF16874 Glycosyl hydrolase family 36 C-terminal domain JOS67_09335 PF01568 Molydopterin dinucleotide binding domain JOS67_09335 PF00384 Molybdopterin oxidoreductase JOS67_09335 PF18364 Molybdopterin oxidoreductase N-terminal domain JOS67_09340 PF03264 NapC/NirT cytochrome c family, N-terminal region JOS67_09345 PF06796 Periplasmic nitrate reductase protein NapE JOS67_09350 PF03649 Uncharacterised protein family (UPF0014) JOS67_09360 PF01226 Formate/nitrite transporter JOS67_09385 PF02698 DUF218 domain JOS67_09390 PF00265 Thymidine kinase JOS67_09395 PF09190 DALR domain JOS67_09395 PF01406 tRNA synthetases class I (C) catalytic domain JOS67_09400 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JOS67_09405 PF00149 Calcineurin-like phosphoesterase JOS67_09410 PF08668 HDOD domain JOS67_09410 PF00563 EAL domain JOS67_09415 PF02810 SEC-C motif JOS67_09420 PF01502 Phosphoribosyl-AMP cyclohydrolase JOS67_09420 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JOS67_09425 PF00977 Histidine biosynthesis protein JOS67_09430 PF00977 Histidine biosynthesis protein JOS67_09435 PF00117 Glutamine amidotransferase class-I JOS67_09440 PF08645 Polynucleotide kinase 3 phosphatase JOS67_09440 PF00475 Imidazoleglycerol-phosphate dehydratase JOS67_09445 PF00155 Aminotransferase class I and II JOS67_09450 PF00815 Histidinol dehydrogenase JOS67_09455 PF08029 HisG, C-terminal domain JOS67_09455 PF01634 ATP phosphoribosyltransferase JOS67_09460 PF00158 Sigma-54 interaction domain JOS67_09460 PF00072 Response regulator receiver domain JOS67_09460 PF02954 Bacterial regulatory protein, Fis family JOS67_09465 PF03553 Na+/H+ antiporter family JOS67_09470 PF00816 H-NS histone family JOS67_09475 PF00294 pfkB family carbohydrate kinase JOS67_09490 PF04356 Protein of unknown function (DUF489) JOS67_09495 PF08328 Adenylosuccinate lyase C-terminal JOS67_09495 PF00206 Lyase JOS67_09505 PF16036 Chalcone isomerase-like JOS67_09530 PF00106 short chain dehydrogenase JOS67_09540 PF01435 Peptidase family M48 JOS67_09555 PF12697 Alpha/beta hydrolase family JOS67_09555 PF08241 Methyltransferase domain JOS67_09560 PF00155 Aminotransferase class I and II JOS67_09565 PF04055 Radical SAM superfamily JOS67_09565 PF06968 Biotin and Thiamin Synthesis associated domain JOS67_09570 PF00202 Aminotransferase class-III JOS67_09585 PF02403 Seryl-tRNA synthetase N-terminal domain JOS67_09585 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JOS67_09590 PF00004 ATPase family associated with various cellular activities (AAA) JOS67_09590 PF12002 MgsA AAA+ ATPase C terminal JOS67_09590 PF16193 AAA C-terminal domain JOS67_09595 PF03548 Outer membrane lipoprotein carrier protein LolA JOS67_09600 PF09397 Ftsk gamma domain JOS67_09600 PF17854 FtsK alpha domain JOS67_09600 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JOS67_09600 PF01580 FtsK/SpoIIIE family JOS67_09605 PF01037 Lrp/AsnC ligand binding domain JOS67_09610 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JOS67_09610 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JOS67_09620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_09620 PF03466 LysR substrate binding domain JOS67_09630 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JOS67_09635 PF12729 Four helix bundle sensory module for signal transduction JOS67_09635 PF00672 HAMP domain JOS67_09635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_09645 PF03372 Endonuclease/Exonuclease/phosphatase family JOS67_09655 PF00579 tRNA synthetases class I (W and Y) JOS67_09670 PF00873 AcrB/AcrD/AcrF family JOS67_09675 PF00529 HlyD membrane-fusion protein of T1SS JOS67_09675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_09680 PF00672 HAMP domain JOS67_09680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_09690 PF06610 L-alanine exporter JOS67_09695 PF00512 His Kinase A (phospho-acceptor) domain JOS67_09695 PF00072 Response regulator receiver domain JOS67_09695 PF09308 LuxQ, periplasmic JOS67_09695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_09705 PF03738 Glutathionylspermidine synthase preATP-grasp JOS67_09715 PF03994 Domain of Unknown Function (DUF350) JOS67_09725 PF02445 Quinolinate synthetase A protein JOS67_09730 PF16331 TolA binding protein trimerisation JOS67_09730 PF13174 Tetratricopeptide repeat JOS67_09735 PF00691 OmpA family JOS67_09740 PF07676 WD40-like Beta Propeller Repeat JOS67_09740 PF04052 TolB amino-terminal domain JOS67_09750 PF02472 Biopolymer transport protein ExbD/TolR JOS67_09755 PF01618 MotA/TolQ/ExbB proton channel family JOS67_09760 PF03061 Thioesterase superfamily JOS67_09770 PF08173 Membrane bound YbgT-like protein JOS67_09775 PF02322 Cytochrome bd terminal oxidase subunit II JOS67_09780 PF01654 Cytochrome bd terminal oxidase subunit I JOS67_09785 PF05491 RuvB C-terminal winged helix domain JOS67_09785 PF05496 Holliday junction DNA helicase RuvB P-loop domain JOS67_09785 PF17864 RuvB AAA lid domain JOS67_09790 PF01330 RuvA N terminal domain JOS67_09790 PF07499 RuvA, C-terminal domain JOS67_09795 PF02075 Crossover junction endodeoxyribonuclease RuvC JOS67_09800 PF01709 Transcriptional regulator JOS67_09805 PF02938 GAD domain JOS67_09805 PF00152 tRNA synthetases class II (D, K and N) JOS67_09805 PF01336 OB-fold nucleic acid binding domain JOS67_09810 PF01904 Protein of unknown function DUF72 JOS67_09815 PF13649 Methyltransferase domain JOS67_09820 PF08003 Protein of unknown function (DUF1698) JOS67_09825 PF08443 RimK-like ATP-grasp domain JOS67_09825 PF18030 RimK PreATP-grasp domain JOS67_09845 PF04310 MukB N-terminal JOS67_09845 PF16330 MukB hinge domain JOS67_09850 PF04288 MukE-like family JOS67_09855 PF17192 MukF middle domain JOS67_09855 PF17193 MukF C-terminal domain JOS67_09855 PF03882 MukF winged-helix domain JOS67_09860 PF13847 Methyltransferase domain JOS67_09865 PF02698 DUF218 domain JOS67_09870 PF00072 Response regulator receiver domain JOS67_09870 PF00486 Transcriptional regulatory protein, C terminal JOS67_09875 PF02613 Nitrate reductase delta subunit JOS67_09880 PF00356 Bacterial regulatory proteins, lacI family JOS67_09885 PF04994 TfoX C-terminal domain JOS67_09885 PF04993 TfoX N-terminal domain JOS67_09905 PF00534 Glycosyl transferases group 1 JOS67_09905 PF08323 Starch synthase catalytic domain JOS67_09910 PF00483 Nucleotidyl transferase JOS67_09915 PF01396 Topoisomerase DNA binding C4 zinc finger JOS67_09915 PF01751 Toprim domain JOS67_09915 PF01131 DNA topoisomerase JOS67_09915 PF08272 Topoisomerase I zinc-ribbon-like JOS67_09920 PF10692 Protein of unknown function (DUF2498) JOS67_09925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JOS67_09935 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JOS67_09940 PF04376 Arginine-tRNA-protein transferase, N terminus JOS67_09940 PF04377 Arginine-tRNA-protein transferase, C terminus JOS67_09945 PF01176 Translation initiation factor 1A / IF-1 JOS67_09950 PF00004 ATPase family associated with various cellular activities (AAA) JOS67_09950 PF02861 Clp amino terminal domain, pathogenicity island component JOS67_09950 PF07724 AAA domain (Cdc48 subfamily) JOS67_09950 PF17871 AAA lid domain JOS67_09950 PF10431 C-terminal, D2-small domain, of ClpB protein JOS67_09955 PF02617 ATP-dependent Clp protease adaptor protein ClpS JOS67_09960 PF00313 'Cold-shock' DNA-binding domain JOS67_09965 PF03971 Monomeric isocitrate dehydrogenase JOS67_09970 PF00849 RNA pseudouridylate synthase JOS67_09975 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JOS67_09985 PF13307 Helicase C-terminal domain JOS67_09985 PF06733 DEAD_2 JOS67_09990 PF01925 Sulfite exporter TauE/SafE JOS67_09995 PF07445 Primosomal replication protein priC JOS67_10000 PF10689 Protein of unknown function (DUF2496) JOS67_10005 PF03372 Endonuclease/Exonuclease/phosphatase family JOS67_10015 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_10020 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_10025 PF00497 Bacterial extracellular solute-binding proteins, family 3 JOS67_10030 PF00005 ABC transporter JOS67_10045 PF02901 Pyruvate formate lyase-like JOS67_10045 PF01228 Glycine radical JOS67_10055 PF04055 Radical SAM superfamily JOS67_10065 PF03887 YfbU domain JOS67_10070 PF08298 PrkA AAA domain JOS67_10070 PF06798 PrkA serine protein kinase C-terminal domain JOS67_10075 PF04285 Protein of unknown function (DUF444) JOS67_10080 PF04293 SpoVR like protein JOS67_10085 PF02348 Cytidylyltransferase JOS67_10090 PF03966 Trm112p-like protein JOS67_10095 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JOS67_10100 PF00664 ABC transporter transmembrane region JOS67_10100 PF00005 ABC transporter JOS67_10105 PF00753 Metallo-beta-lactamase superfamily JOS67_10105 PF13567 Domain of unknown function (DUF4131) JOS67_10105 PF03772 Competence protein JOS67_10115 PF02687 FtsX-like permease family JOS67_10115 PF12704 MacB-like periplasmic core domain JOS67_10120 PF00005 ABC transporter JOS67_10125 PF12704 MacB-like periplasmic core domain JOS67_10125 PF02687 FtsX-like permease family JOS67_10135 PF02559 CarD-like/TRCF domain JOS67_10135 PF00270 DEAD/DEAH box helicase JOS67_10135 PF00271 Helicase conserved C-terminal domain JOS67_10135 PF03461 TRCF domain JOS67_10135 PF17757 UvrB interaction domain JOS67_10150 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_10155 PF05728 Uncharacterised protein family (UPF0227) JOS67_10160 PF01636 Phosphotransferase enzyme family JOS67_10165 PF13036 Peptidoglycan-synthase activator LpoB JOS67_10165 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JOS67_10180 PF01230 HIT domain JOS67_10185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_10185 PF00672 HAMP domain JOS67_10195 PF01048 Phosphorylase superfamily JOS67_10200 PF00403 Heavy-metal-associated domain JOS67_10205 PF00478 IMP dehydrogenase / GMP reductase domain JOS67_10205 PF00571 CBS domain JOS67_10210 PF08032 RNA 2'-O ribose methyltransferase substrate binding JOS67_10210 PF00588 SpoU rRNA Methylase family JOS67_10220 PF00072 Response regulator receiver domain JOS67_10220 PF00990 Diguanylate cyclase, GGDEF domain JOS67_10230 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JOS67_10235 PF09619 Type III secretion system lipoprotein chaperone (YscW) JOS67_10250 PF01037 Lrp/AsnC ligand binding domain JOS67_10250 PF13404 AsnC-type helix-turn-helix domain JOS67_10255 PF00291 Pyridoxal-phosphate dependent enzyme JOS67_10275 PF00873 AcrB/AcrD/AcrF family JOS67_10280 PF00529 HlyD membrane-fusion protein of T1SS JOS67_10280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_10325 PF07690 Major Facilitator Superfamily JOS67_10330 PF03601 Conserved hypothetical protein 698 JOS67_10340 PF13193 AMP-binding enzyme C-terminal domain JOS67_10340 PF00501 AMP-binding enzyme JOS67_10345 PF13378 Enolase C-terminal domain-like JOS67_10350 PF00378 Enoyl-CoA hydratase/isomerase JOS67_10355 PF12697 Alpha/beta hydrolase family JOS67_10360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JOS67_10360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JOS67_10360 PF16582 Middle domain of thiamine pyrophosphate JOS67_10365 PF00425 chorismate binding enzyme JOS67_10370 PF00155 Aminotransferase class I and II JOS67_10380 PF13286 Phosphohydrolase-associated domain JOS67_10380 PF01966 HD domain JOS67_10400 PF13145 PPIC-type PPIASE domain JOS67_10405 PF00216 Bacterial DNA-binding protein JOS67_10410 PF02190 ATP-dependent protease La (LON) substrate-binding domain JOS67_10410 PF05362 Lon protease (S16) C-terminal proteolytic domain JOS67_10410 PF00004 ATPase family associated with various cellular activities (AAA) JOS67_10415 PF10431 C-terminal, D2-small domain, of ClpB protein JOS67_10415 PF07724 AAA domain (Cdc48 subfamily) JOS67_10415 PF06689 ClpX C4-type zinc finger JOS67_10420 PF00574 Clp protease JOS67_10425 PF05697 Bacterial trigger factor protein (TF) JOS67_10425 PF05698 Bacterial trigger factor protein (TF) C-terminus JOS67_10425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JOS67_10430 PF00512 His Kinase A (phospho-acceptor) domain JOS67_10430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_10430 PF02743 Cache domain JOS67_10435 PF00158 Sigma-54 interaction domain JOS67_10435 PF00072 Response regulator receiver domain JOS67_10435 PF02954 Bacterial regulatory protein, Fis family JOS67_10440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JOS67_10445 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JOS67_10450 PF03480 Bacterial extracellular solute-binding protein, family 7 JOS67_10455 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JOS67_10470 PF02386 Cation transport protein JOS67_10475 PF02254 TrkA-N domain JOS67_10475 PF02080 TrkA-C domain JOS67_10480 PF00270 DEAD/DEAH box helicase JOS67_10480 PF00271 Helicase conserved C-terminal domain JOS67_10485 PF01595 Cyclin M transmembrane N-terminal domain JOS67_10485 PF03471 Transporter associated domain JOS67_10485 PF00571 CBS domain JOS67_10495 PF04820 Tryptophan halogenase JOS67_10520 PF00550 Phosphopantetheine attachment site JOS67_10525 PF00550 Phosphopantetheine attachment site JOS67_10535 PF00501 AMP-binding enzyme JOS67_10535 PF00975 Thioesterase domain JOS67_10535 PF00550 Phosphopantetheine attachment site JOS67_10535 PF00668 Condensation domain JOS67_10535 PF13193 AMP-binding enzyme C-terminal domain JOS67_10540 PF07977 FabA-like domain JOS67_10545 PF00535 Glycosyl transferase family 2 JOS67_10550 PF00221 Aromatic amino acid lyase JOS67_10575 PF02801 Beta-ketoacyl synthase, C-terminal domain JOS67_10575 PF00109 Beta-ketoacyl synthase, N-terminal domain JOS67_10580 PF07977 FabA-like domain JOS67_10590 PF02801 Beta-ketoacyl synthase, C-terminal domain JOS67_10590 PF00109 Beta-ketoacyl synthase, N-terminal domain JOS67_10595 PF01209 ubiE/COQ5 methyltransferase family JOS67_10605 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JOS67_10605 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JOS67_10610 PF07670 Nucleoside recognition JOS67_10610 PF07662 Na+ dependent nucleoside transporter C-terminus JOS67_10610 PF01773 Na+ dependent nucleoside transporter N-terminus JOS67_10615 PF03466 LysR substrate binding domain JOS67_10615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_10620 PF13406 Transglycosylase SLT domain JOS67_10625 PF05166 YcgL domain JOS67_10630 PF03775 Septum formation inhibitor MinC, C-terminal domain JOS67_10630 PF05209 Septum formation inhibitor MinC, N-terminal domain JOS67_10635 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JOS67_10640 PF03776 Septum formation topological specificity factor MinE JOS67_10645 PF00570 HRDC domain JOS67_10645 PF01612 3'-5' exonuclease JOS67_10650 PF13193 AMP-binding enzyme C-terminal domain JOS67_10650 PF00501 AMP-binding enzyme JOS67_10655 PF00561 alpha/beta hydrolase fold JOS67_10660 PF03843 Outer membrane lipoprotein Slp family JOS67_10670 PF00814 Glycoprotease family JOS67_10675 PF04851 Type III restriction enzyme, res subunit JOS67_10675 PF13307 Helicase C-terminal domain JOS67_10680 PF01842 ACT domain JOS67_10680 PF00551 Formyl transferase JOS67_10685 PF00089 Trypsin JOS67_10695 PF06185 YecM protein JOS67_10700 PF03485 Arginyl tRNA synthetase N terminal domain JOS67_10700 PF05746 DALR anticodon binding domain JOS67_10700 PF00750 tRNA synthetases class I (R) JOS67_10715 PF07670 Nucleoside recognition JOS67_10715 PF07664 Ferrous iron transport protein B C terminus JOS67_10715 PF17910 FeoB cytosolic helical domain JOS67_10715 PF02421 Ferrous iron transport protein B JOS67_10720 PF04023 FeoA domain JOS67_10725 PF12833 Helix-turn-helix domain JOS67_10725 PF02311 AraC-like ligand binding domain JOS67_10730 PF01297 Zinc-uptake complex component A periplasmic JOS67_10735 PF00005 ABC transporter JOS67_10740 PF00950 ABC 3 transport family JOS67_10745 PF02629 CoA binding domain JOS67_10745 PF00549 CoA-ligase JOS67_10750 PF08442 ATP-grasp domain JOS67_10750 PF00549 CoA-ligase JOS67_10755 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JOS67_10755 PF00364 Biotin-requiring enzyme JOS67_10755 PF02817 e3 binding domain JOS67_10760 PF16078 2-oxoglutarate dehydrogenase N-terminus JOS67_10760 PF02779 Transketolase, pyrimidine binding domain JOS67_10760 PF16870 2-oxoglutarate dehydrogenase C-terminal JOS67_10760 PF00676 Dehydrogenase E1 component JOS67_10765 PF13085 2Fe-2S iron-sulfur cluster binding domain JOS67_10770 PF02910 Fumarate reductase flavoprotein C-term JOS67_10770 PF00890 FAD binding domain JOS67_10775 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JOS67_10780 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JOS67_10785 PF00285 Citrate synthase, C-terminal domain JOS67_10790 PF01784 NIF3 (NGG1p interacting factor 3) JOS67_10800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JOS67_10800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JOS67_10800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JOS67_10800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JOS67_10805 PF03925 SeqA protein C-terminal domain JOS67_10805 PF17206 SeqA protein N-terminal domain JOS67_10810 PF12697 Alpha/beta hydrolase family JOS67_10820 PF00258 Flavodoxin JOS67_10830 PF01475 Ferric uptake regulator family JOS67_10835 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JOS67_10835 PF00749 tRNA synthetases class I (E and Q), catalytic domain JOS67_10840 PF02378 Phosphotransferase system, EIIC JOS67_10840 PF00367 phosphotransferase system, EIIB JOS67_10840 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JOS67_10845 PF01979 Amidohydrolase family JOS67_10850 PF01047 MarR family JOS67_10850 PF00480 ROK family JOS67_10855 PF02254 TrkA-N domain JOS67_10855 PF00999 Sodium/hydrogen exchanger family JOS67_10860 PF13537 Glutamine amidotransferase domain JOS67_10860 PF00733 Asparagine synthase JOS67_10865 PF02357 Transcription termination factor nusG JOS67_10870 PF00854 POT family JOS67_10875 PF00762 Ferrochelatase JOS67_10880 PF05191 Adenylate kinase, active site lid JOS67_10885 PF00183 Hsp90 protein JOS67_10885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_10890 PF00486 Transcriptional regulatory protein, C terminal JOS67_10895 PF17323 Trans-membrane regulatory protein ToxS JOS67_10910 PF12850 Calcineurin-like phosphoesterase superfamily domain JOS67_10930 PF07556 Protein of unknown function (DUF1538) JOS67_10935 PF07556 Protein of unknown function (DUF1538) JOS67_10940 PF01370 NAD dependent epimerase/dehydratase family JOS67_10940 PF08338 Domain of unknown function (DUF1731) JOS67_10945 PF00106 short chain dehydrogenase JOS67_10950 PF00085 Thioredoxin JOS67_10955 PF01145 SPFH domain / Band 7 family JOS67_10955 PF16200 C-terminal region of band_7 JOS67_10970 PF03573 outer membrane porin, OprD family JOS67_10975 PF03120 NAD-dependent DNA ligase OB-fold domain JOS67_10975 PF00533 BRCA1 C Terminus (BRCT) domain JOS67_10975 PF12826 Helix-hairpin-helix motif JOS67_10975 PF01653 NAD-dependent DNA ligase adenylation domain JOS67_10975 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JOS67_10980 PF04354 ZipA, C-terminal FtsZ-binding domain JOS67_10990 PF00291 Pyridoxal-phosphate dependent enzyme JOS67_10995 PF00381 PTS HPr component phosphorylation site JOS67_11000 PF00391 PEP-utilising enzyme, mobile domain JOS67_11000 PF02896 PEP-utilising enzyme, TIM barrel domain JOS67_11000 PF05524 PEP-utilising enzyme, N-terminal JOS67_11005 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JOS67_11010 PF00669 Bacterial flagellin N-terminal helical region JOS67_11010 PF07196 Flagellin hook IN motif JOS67_11010 PF00700 Bacterial flagellin C-terminal helical region JOS67_11015 PF00669 Bacterial flagellin N-terminal helical region JOS67_11015 PF07196 Flagellin hook IN motif JOS67_11015 PF00700 Bacterial flagellin C-terminal helical region JOS67_11020 PF00700 Bacterial flagellin C-terminal helical region JOS67_11020 PF07196 Flagellin hook IN motif JOS67_11020 PF00669 Bacterial flagellin N-terminal helical region JOS67_11030 PF00669 Bacterial flagellin N-terminal helical region JOS67_11035 PF07196 Flagellin hook IN motif JOS67_11035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOS67_11040 PF10135 Rod binding protein JOS67_11040 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JOS67_11045 PF02119 Flagellar P-ring protein JOS67_11050 PF02107 Flagellar L-ring protein JOS67_11055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOS67_11055 PF00460 Flagella basal body rod protein JOS67_11060 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOS67_11060 PF00460 Flagella basal body rod protein JOS67_11065 PF07559 Flagellar basal body protein FlaE JOS67_11065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOS67_11065 PF00460 Flagella basal body rod protein JOS67_11070 PF13861 FlgD Tudor-like domain JOS67_11070 PF13860 FlgD Ig-like domain JOS67_11070 PF03963 Flagellar hook capping protein - N-terminal region JOS67_11075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOS67_11075 PF00460 Flagella basal body rod protein JOS67_11080 PF00460 Flagella basal body rod protein JOS67_11085 PF03705 CheR methyltransferase, all-alpha domain JOS67_11085 PF01739 CheR methyltransferase, SAM binding domain JOS67_11090 PF01584 CheW-like domain JOS67_11090 PF00072 Response regulator receiver domain JOS67_11135 PF01389 OmpA-like transmembrane domain JOS67_11135 PF00691 OmpA family JOS67_11140 PF00749 tRNA synthetases class I (E and Q), catalytic domain JOS67_11145 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JOS67_11150 PF13609 Gram-negative porin JOS67_11155 PF00403 Heavy-metal-associated domain JOS67_11170 PF00728 Glycosyl hydrolase family 20, catalytic domain JOS67_11170 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JOS67_11170 PF03173 Putative carbohydrate binding domain JOS67_11170 PF02838 Glycosyl hydrolase family 20, domain 2 JOS67_11195 PF01713 Smr domain JOS67_11200 PF01479 S4 domain JOS67_11200 PF00849 RNA pseudouridylate synthase JOS67_11205 PF04073 Aminoacyl-tRNA editing domain JOS67_11210 PF00149 Calcineurin-like phosphoesterase JOS67_11210 PF02872 5'-nucleotidase, C-terminal domain JOS67_11215 PF00793 DAHP synthetase I family JOS67_11220 PF13369 Transglutaminase-like superfamily JOS67_11225 PF04247 Invasion gene expression up-regulator, SirB JOS67_11230 PF13847 Methyltransferase domain JOS67_11230 PF17827 PrmC N-terminal domain JOS67_11235 PF00472 RF-1 domain JOS67_11235 PF03462 PCRF domain JOS67_11240 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JOS67_11240 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JOS67_11240 PF01488 Shikimate / quinate 5-dehydrogenase JOS67_11245 PF03550 Outer membrane lipoprotein LolB JOS67_11250 PF00288 GHMP kinases N terminal domain JOS67_11250 PF08544 GHMP kinases C terminal JOS67_11255 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JOS67_11255 PF14572 Phosphoribosyl synthetase-associated domain JOS67_11260 PF01195 Peptidyl-tRNA hydrolase JOS67_11265 PF06071 Protein of unknown function (DUF933) JOS67_11265 PF01926 50S ribosome-binding GTPase JOS67_11365 PF01494 FAD binding domain JOS67_11370 PF01938 TRAM domain JOS67_11370 PF00919 Uncharacterized protein family UPF0004 JOS67_11370 PF04055 Radical SAM superfamily JOS67_11375 PF02562 PhoH-like protein JOS67_11380 PF02130 Uncharacterized protein family UPF0054 JOS67_11385 PF00571 CBS domain JOS67_11385 PF03471 Transporter associated domain JOS67_11390 PF00795 Carbon-nitrogen hydrolase JOS67_11395 PF07295 Zinc-ribbon containing domain JOS67_11400 PF00133 tRNA synthetases class I (I, L, M and V) JOS67_11400 PF08264 Anticodon-binding domain of tRNA JOS67_11400 PF13603 Leucyl-tRNA synthetase, Domain 2 JOS67_11405 PF04390 Lipopolysaccharide-assembly JOS67_11410 PF06144 DNA polymerase III, delta subunit JOS67_11410 PF14840 Processivity clamp loader gamma complex DNA pol III C-term JOS67_11420 PF02590 Predicted SPOUT methyltransferase JOS67_11425 PF03717 Penicillin-binding Protein dimerisation domain JOS67_11425 PF00905 Penicillin binding protein transpeptidase domain JOS67_11430 PF01098 Cell cycle protein JOS67_11435 PF03330 Lytic transglycolase JOS67_11435 PF05036 Sporulation related domain JOS67_11440 PF07943 Penicillin-binding protein 5, C-terminal domain JOS67_11440 PF00768 D-alanyl-D-alanine carboxypeptidase JOS67_11445 PF04359 Protein of unknown function (DUF493) JOS67_11450 PF03099 Biotin/lipoate A/B protein ligase family JOS67_11455 PF04055 Radical SAM superfamily JOS67_11455 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JOS67_11460 PF00464 Serine hydroxymethyltransferase JOS67_11465 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JOS67_11465 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JOS67_11480 PF00128 Alpha amylase, catalytic domain JOS67_11480 PF16657 Maltogenic Amylase, C-terminal domain JOS67_11485 PF00367 phosphotransferase system, EIIB JOS67_11485 PF02378 Phosphotransferase system, EIIC JOS67_11490 PF00356 Bacterial regulatory proteins, lacI family JOS67_11500 PF09383 NIL domain JOS67_11500 PF00005 ABC transporter JOS67_11505 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_11510 PF03180 NLPA lipoprotein JOS67_11515 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) JOS67_11520 PF07348 Syd protein (SUKH-2) JOS67_11525 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JOS67_11525 PF14489 QueF-like protein JOS67_11535 PF00990 Diguanylate cyclase, GGDEF domain JOS67_11540 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JOS67_11540 PF03641 Possible lysine decarboxylase JOS67_11540 PF11892 Domain of unknown function (DUF3412) JOS67_11545 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JOS67_11545 PF01367 5'-3' exonuclease, C-terminal SAM fold JOS67_11550 PF18125 RlmM ferredoxin-like domain JOS67_11550 PF01728 FtsJ-like methyltransferase JOS67_11555 PF04241 Protein of unknown function (DUF423) JOS67_11565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_11565 PF03466 LysR substrate binding domain JOS67_11570 PF02568 Thiamine biosynthesis protein (ThiI) JOS67_11570 PF02926 THUMP domain JOS67_11575 PF13677 Membrane MotB of proton-channel complex MotA/MotB JOS67_11575 PF00691 OmpA family JOS67_11580 PF01618 MotA/TolQ/ExbB proton channel family JOS67_11585 PF02609 Exonuclease VII small subunit JOS67_11590 PF00348 Polyprenyl synthetase JOS67_11595 PF02779 Transketolase, pyrimidine binding domain JOS67_11595 PF02780 Transketolase, C-terminal domain JOS67_11595 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JOS67_11600 PF04608 Phosphatidylglycerophosphatase A JOS67_11605 PF02769 AIR synthase related protein, C-terminal domain JOS67_11605 PF00586 AIR synthase related protein, N-terminal domain JOS67_11610 PF01029 NusB family JOS67_11615 PF00885 6,7-dimethyl-8-ribityllumazine synthase JOS67_11620 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JOS67_11620 PF00925 GTP cyclohydrolase II JOS67_11625 PF00677 Lumazine binding domain JOS67_11630 PF01872 RibD C-terminal domain JOS67_11630 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JOS67_11635 PF03477 ATP cone domain JOS67_11640 PF00171 Aldehyde dehydrogenase family JOS67_11645 PF01472 PUA domain JOS67_11645 PF00696 Amino acid kinase family JOS67_11650 PF07417 Sigma factor-binding transcriptional regulator Crl JOS67_11655 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) JOS67_11660 PF00156 Phosphoribosyl transferase domain JOS67_11665 PF00860 Permease family JOS67_11670 PF01546 Peptidase family M20/M25/M40 JOS67_11670 PF07687 Peptidase dimerisation domain JOS67_11685 PF07715 TonB-dependent Receptor Plug Domain JOS67_11685 PF00593 TonB dependent receptor JOS67_11700 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JOS67_11700 PF02769 AIR synthase related protein, C-terminal domain JOS67_11700 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JOS67_11705 PF00497 Bacterial extracellular solute-binding proteins, family 3 JOS67_11705 PF01464 Transglycosylase SLT domain JOS67_11710 PF14437 MafB19-like deaminase JOS67_11715 PF03806 AbgT putative transporter family JOS67_11735 PF00114 Pilin (bacterial filament) JOS67_11735 PF07963 Prokaryotic N-terminal methylation motif JOS67_11740 PF00114 Pilin (bacterial filament) JOS67_11740 PF07963 Prokaryotic N-terminal methylation motif JOS67_11745 PF00684 DnaJ central domain JOS67_11745 PF01556 DnaJ C terminal domain JOS67_11745 PF00226 DnaJ domain JOS67_11750 PF00012 Hsp70 protein JOS67_11755 PF00375 Sodium:dicarboxylate symporter family JOS67_11760 PF01025 GrpE JOS67_11765 PF01513 ATP-NAD kinase JOS67_11775 PF02463 RecF/RecN/SMC N terminal domain JOS67_11780 PF04355 SmpA / OmlA family JOS67_11785 PF03658 RnfH family Ubiquitin JOS67_11790 PF03364 Polyketide cyclase / dehydrase and lipid transport JOS67_11795 PF01668 SmpB protein JOS67_11810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_11810 PF03466 LysR substrate binding domain JOS67_11815 PF00795 Carbon-nitrogen hydrolase JOS67_11815 PF00583 Acetyltransferase (GNAT) family JOS67_11835 PF00202 Aminotransferase class-III JOS67_11840 PF01053 Cys/Met metabolism PLP-dependent enzyme JOS67_11845 PF07969 Amidohydrolase family JOS67_11855 PF01266 FAD dependent oxidoreductase JOS67_11860 PF01235 Sodium:alanine symporter family JOS67_11865 PF01184 GPR1/FUN34/yaaH family JOS67_11870 PF00704 Glycosyl hydrolases family 18 JOS67_11870 PF06483 Chitinase C JOS67_11875 PF03553 Na+/H+ antiporter family JOS67_11900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_11900 PF00529 HlyD membrane-fusion protein of T1SS JOS67_11905 PF00873 AcrB/AcrD/AcrF family JOS67_11910 PF00486 Transcriptional regulatory protein, C terminal JOS67_11960 PF00589 Phage integrase family JOS67_11960 PF13356 Arm DNA-binding domain JOS67_11965 PF00958 GMP synthase C terminal domain JOS67_11965 PF00117 Glutamine amidotransferase class-I JOS67_11965 PF02540 NAD synthase JOS67_11970 PF00478 IMP dehydrogenase / GMP reductase domain JOS67_11970 PF00571 CBS domain JOS67_11975 PF13742 OB-fold nucleic acid binding domain JOS67_11975 PF02601 Exonuclease VII, large subunit JOS67_11990 PF01926 50S ribosome-binding GTPase JOS67_11990 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JOS67_11995 PF13360 PQQ-like domain JOS67_12000 PF09976 Tetratricopeptide repeat-like domain JOS67_12005 PF13393 Histidyl-tRNA synthetase JOS67_12005 PF03129 Anticodon binding domain JOS67_12010 PF04551 GcpE protein JOS67_12015 PF13464 Domain of unknown function (DUF4115) JOS67_12020 PF04055 Radical SAM superfamily JOS67_12025 PF00334 Nucleoside diphosphate kinase JOS67_12030 PF12404 Peptidase JOS67_12030 PF00883 Cytosol aminopeptidase family, catalytic domain JOS67_12035 PF04384 Iron-sulphur cluster assembly JOS67_12040 PF00111 2Fe-2S iron-sulfur cluster binding domain JOS67_12045 PF00012 Hsp70 protein JOS67_12050 PF07743 HSCB C-terminal oligomerisation domain JOS67_12050 PF00226 DnaJ domain JOS67_12055 PF01521 Iron-sulphur cluster biosynthesis JOS67_12060 PF01592 NifU-like N terminal domain JOS67_12065 PF00266 Aminotransferase class-V JOS67_12070 PF02082 Transcriptional regulator JOS67_12075 PF00588 SpoU rRNA Methylase family JOS67_12080 PF00459 Inositol monophosphatase family JOS67_12085 PF02355 Protein export membrane protein JOS67_12085 PF07549 SecD/SecF GG Motif JOS67_12090 PF07549 SecD/SecF GG Motif JOS67_12090 PF13721 SecD export protein N-terminal TM region JOS67_12090 PF02355 Protein export membrane protein JOS67_12095 PF02699 Preprotein translocase subunit JOS67_12100 PF01702 Queuine tRNA-ribosyltransferase JOS67_12105 PF02547 Queuosine biosynthesis protein JOS67_12115 PF00571 CBS domain JOS67_12120 PF00463 Isocitrate lyase family JOS67_12125 PF01274 Malate synthase JOS67_12130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_12130 PF03466 LysR substrate binding domain JOS67_12135 PF00578 AhpC/TSA family JOS67_12135 PF10417 C-terminal domain of 1-Cys peroxiredoxin JOS67_12140 PF03932 CutC family JOS67_12145 PF03976 Polyphosphate kinase 2 (PPK2) JOS67_12150 PF01895 PhoU domain JOS67_12155 PF00005 ABC transporter JOS67_12160 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_12165 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_12170 PF02503 Polyphosphate kinase middle domain JOS67_12170 PF13089 Polyphosphate kinase N-terminal domain JOS67_12170 PF13090 Polyphosphate kinase C-terminal domain 2 JOS67_12170 PF17941 Polyphosphate kinase C-terminal domain 1 JOS67_12175 PF02541 Ppx/GppA phosphatase family JOS67_12180 PF12849 PBP superfamily domain JOS67_12185 PF11808 Phosphate regulon sensor protein PhoR JOS67_12185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_12185 PF00512 His Kinase A (phospho-acceptor) domain JOS67_12185 PF00989 PAS fold JOS67_12190 PF00072 Response regulator receiver domain JOS67_12190 PF00486 Transcriptional regulatory protein, C terminal JOS67_12195 PF04381 Putative exonuclease, RdgC JOS67_12200 PF01136 Peptidase family U32 JOS67_12200 PF16325 Peptidase family U32 C-terminal domain JOS67_12205 PF00037 4Fe-4S binding domain JOS67_12215 PF03411 Penicillin-insensitive murein endopeptidase JOS67_12260 PF17871 AAA lid domain JOS67_12260 PF07724 AAA domain (Cdc48 subfamily) JOS67_12260 PF00004 ATPase family associated with various cellular activities (AAA) JOS67_12260 PF10431 C-terminal, D2-small domain, of ClpB protein JOS67_12260 PF02861 Clp amino terminal domain, pathogenicity island component JOS67_12265 PF02578 Multi-copper polyphenol oxidoreductase laccase JOS67_12270 PF00849 RNA pseudouridylate synthase JOS67_12270 PF01479 S4 domain JOS67_12275 PF13525 Outer membrane lipoprotein JOS67_12280 PF01464 Transglycosylase SLT domain JOS67_12280 PF00497 Bacterial extracellular solute-binding proteins, family 3 JOS67_12285 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JOS67_12290 PF00800 Prephenate dehydratase JOS67_12290 PF01817 Chorismate mutase type II JOS67_12295 PF01931 Protein of unknown function DUF84 JOS67_12300 PF01371 Trp repressor protein JOS67_12305 PF01464 Transglycosylase SLT domain JOS67_12305 PF14718 Soluble lytic murein transglycosylase L domain JOS67_12310 PF12848 ABC transporter JOS67_12310 PF00005 ABC transporter JOS67_12315 PF07238 PilZ domain JOS67_12320 PF01464 Transglycosylase SLT domain JOS67_12320 PF01551 Peptidase family M23 JOS67_12320 PF10145 Phage-related minor tail protein JOS67_12325 PF02153 Prephenate dehydrogenase JOS67_12325 PF01817 Chorismate mutase type II JOS67_12330 PF00793 DAHP synthetase I family JOS67_12335 PF00933 Glycosyl hydrolase family 3 N terminal domain JOS67_12340 PF03702 Anhydro-N-acetylmuramic acid kinase JOS67_12345 PF01380 SIS domain JOS67_12360 PF02554 Carbon starvation protein CstA JOS67_12365 PF06580 Histidine kinase JOS67_12365 PF07694 5TMR of 5TMR-LYT JOS67_12370 PF00072 Response regulator receiver domain JOS67_12370 PF04397 LytTr DNA-binding domain JOS67_12380 PF02401 LytB protein JOS67_12385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JOS67_12390 PF01252 Signal peptidase (SPase) II JOS67_12395 PF08264 Anticodon-binding domain of tRNA JOS67_12395 PF00133 tRNA synthetases class I (I, L, M and V) JOS67_12395 PF06827 Zinc finger found in FPG and IleRS JOS67_12400 PF01687 Riboflavin kinase JOS67_12400 PF06574 FAD synthetase JOS67_12405 PF03023 Lipid II flippase MurJ JOS67_12410 PF01649 Ribosomal protein S20 JOS67_12415 PF01022 Bacterial regulatory protein, arsR family JOS67_12420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_12420 PF03466 LysR substrate binding domain JOS67_12425 PF02690 Na+/Pi-cotransporter JOS67_12435 PF00303 Thymidylate synthase JOS67_12440 PF01790 Prolipoprotein diacylglyceryl transferase JOS67_12445 PF01925 Sulfite exporter TauE/SafE JOS67_12450 PF00391 PEP-utilising enzyme, mobile domain JOS67_12450 PF05524 PEP-utilising enzyme, N-terminal JOS67_12450 PF01590 GAF domain JOS67_12450 PF02896 PEP-utilising enzyme, TIM barrel domain JOS67_12455 PF00293 NUDIX domain JOS67_12460 PF02976 DNA mismatch repair enzyme MutH JOS67_12470 PF00248 Aldo/keto reductase family JOS67_12480 PF00072 Response regulator receiver domain JOS67_12480 PF00158 Sigma-54 interaction domain JOS67_12480 PF02954 Bacterial regulatory protein, Fis family JOS67_12485 PF00152 tRNA synthetases class II (D, K and N) JOS67_12485 PF01336 OB-fold nucleic acid binding domain JOS67_12495 PF17768 RecJ OB domain JOS67_12495 PF01368 DHH family JOS67_12495 PF02272 DHHA1 domain JOS67_12500 PF10411 Disulfide bond isomerase protein N-terminus JOS67_12500 PF13098 Thioredoxin-like domain JOS67_12505 PF00589 Phage integrase family JOS67_12505 PF02899 Phage integrase, N-terminal SAM-like domain JOS67_12510 PF00258 Flavodoxin JOS67_12515 PF05525 Branched-chain amino acid transport protein JOS67_12520 PF05175 Methyltransferase small domain JOS67_12525 PF00270 DEAD/DEAH box helicase JOS67_12525 PF00271 Helicase conserved C-terminal domain JOS67_12530 PF03883 Peroxide stress protein YaaA JOS67_12535 PF01235 Sodium:alanine symporter family JOS67_12550 PF03167 Uracil DNA glycosylase superfamily JOS67_12555 PF01261 Xylose isomerase-like TIM barrel JOS67_12560 PF01228 Glycine radical JOS67_12570 PF14821 Threonine synthase N terminus JOS67_12570 PF00291 Pyridoxal-phosphate dependent enzyme JOS67_12575 PF08544 GHMP kinases C terminal JOS67_12575 PF00288 GHMP kinases N terminal domain JOS67_12580 PF01842 ACT domain JOS67_12580 PF00742 Homoserine dehydrogenase JOS67_12580 PF03447 Homoserine dehydrogenase, NAD binding domain JOS67_12580 PF00696 Amino acid kinase family JOS67_12580 PF13840 ACT domain JOS67_12595 PF03737 Aldolase/RraA JOS67_12605 PF00072 Response regulator receiver domain JOS67_12605 PF00486 Transcriptional regulatory protein, C terminal JOS67_12615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_12615 PF01627 Hpt domain JOS67_12615 PF00989 PAS fold JOS67_12615 PF18415 Histidine kinase receptor ArcB trans-membrane domain JOS67_12615 PF00072 Response regulator receiver domain JOS67_12615 PF00512 His Kinase A (phospho-acceptor) domain JOS67_12620 PF00563 EAL domain JOS67_12620 PF00360 Phytochrome region JOS67_12620 PF00990 Diguanylate cyclase, GGDEF domain JOS67_12620 PF01590 GAF domain JOS67_12625 PF16199 Radical_SAM C-terminal domain JOS67_12625 PF04055 Radical SAM superfamily JOS67_12630 PF00310 Glutamine amidotransferases class-II JOS67_12630 PF04898 Glutamate synthase central domain JOS67_12630 PF01645 Conserved region in glutamate synthase JOS67_12630 PF01493 GXGXG motif JOS67_12635 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_12635 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JOS67_12640 PF01493 GXGXG motif JOS67_12640 PF01645 Conserved region in glutamate synthase JOS67_12640 PF04898 Glutamate synthase central domain JOS67_12640 PF00310 Glutamine amidotransferases class-II JOS67_12645 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JOS67_12645 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_12655 PF01048 Phosphorylase superfamily JOS67_12660 PF17113 Regulatory signalling modulator protein AmpE JOS67_12660 PF03186 CobD/Cbib protein JOS67_12665 PF01497 Periplasmic binding protein JOS67_12670 PF03458 UPF0126 domain JOS67_12675 PF03466 LysR substrate binding domain JOS67_12675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_12690 PF01925 Sulfite exporter TauE/SafE JOS67_12705 PF02142 MGS-like domain JOS67_12705 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JOS67_12705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JOS67_12710 PF00117 Glutamine amidotransferase class-I JOS67_12710 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JOS67_12720 PF01113 Dihydrodipicolinate reductase, N-terminus JOS67_12720 PF05173 Dihydrodipicolinate reductase, C-terminus JOS67_12725 PF00293 NUDIX domain JOS67_12730 PF07516 SecA Wing and Scaffold domain JOS67_12730 PF07517 SecA DEAD-like domain JOS67_12730 PF01043 SecA preprotein cross-linking domain JOS67_12730 PF02810 SEC-C motif JOS67_12740 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JOS67_12745 PF00091 Tubulin/FtsZ family, GTPase domain JOS67_12745 PF12327 FtsZ family, C-terminal domain JOS67_12750 PF02491 SHS2 domain inserted in FTSA JOS67_12755 PF08478 POTRA domain, FtsQ-type JOS67_12755 PF03799 Cell division protein FtsQ JOS67_12760 PF02875 Mur ligase family, glutamate ligase domain JOS67_12760 PF08245 Mur ligase middle domain JOS67_12760 PF01225 Mur ligase family, catalytic domain JOS67_12765 PF03033 Glycosyltransferase family 28 N-terminal domain JOS67_12765 PF04101 Glycosyltransferase family 28 C-terminal domain JOS67_12770 PF01098 Cell cycle protein JOS67_12775 PF08245 Mur ligase middle domain JOS67_12775 PF02875 Mur ligase family, glutamate ligase domain JOS67_12780 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JOS67_12780 PF00953 Glycosyl transferase family 4 JOS67_12785 PF02875 Mur ligase family, glutamate ligase domain JOS67_12785 PF08245 Mur ligase middle domain JOS67_12785 PF01225 Mur ligase family, catalytic domain JOS67_12790 PF02875 Mur ligase family, glutamate ligase domain JOS67_12790 PF01225 Mur ligase family, catalytic domain JOS67_12790 PF08245 Mur ligase middle domain JOS67_12795 PF00905 Penicillin binding protein transpeptidase domain JOS67_12795 PF03717 Penicillin-binding Protein dimerisation domain JOS67_12800 PF04999 Cell division protein FtsL JOS67_12805 PF01795 MraW methylase family JOS67_12815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JOS67_12820 PF04348 LppC putative lipoprotein JOS67_12825 PF02021 Uncharacterised protein family UPF0102 JOS67_12830 PF13580 SIS domain JOS67_12835 PF04972 BON domain JOS67_12840 PF04386 Stringent starvation protein B JOS67_12845 PF00043 Glutathione S-transferase, C-terminal domain JOS67_12845 PF02798 Glutathione S-transferase, N-terminal domain JOS67_12850 PF02167 Cytochrome C1 family JOS67_12855 PF00033 Cytochrome b/b6/petB JOS67_12855 PF00032 Cytochrome b(C-terminal)/b6/petD JOS67_12860 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JOS67_12860 PF00355 Rieske [2Fe-2S] domain JOS67_12865 PF00380 Ribosomal protein S9/S16 JOS67_12870 PF00572 Ribosomal protein L13 JOS67_12875 PF03969 AFG1-like ATPase JOS67_12880 PF06295 Protein of unknown function (DUF1043) JOS67_12885 PF00595 PDZ domain JOS67_12890 PF13180 PDZ domain JOS67_12895 PF00521 DNA gyrase/topoisomerase IV, subunit A JOS67_12895 PF03989 DNA gyrase C-terminal domain, beta-propeller JOS67_12900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_12900 PF00986 DNA gyrase B subunit, carboxyl terminus JOS67_12900 PF00204 DNA gyrase B JOS67_12900 PF01751 Toprim domain JOS67_12905 PF05728 Uncharacterised protein family (UPF0227) JOS67_12910 PF00149 Calcineurin-like phosphoesterase JOS67_12915 PF06853 Protein of unknown function (DUF1249) JOS67_12920 PF00293 NUDIX domain JOS67_12925 PF02321 Outer membrane efflux protein JOS67_12930 PF01467 Cytidylyltransferase-like JOS67_12930 PF00294 pfkB family carbohydrate kinase JOS67_12935 PF03710 Glutamate-ammonia ligase adenylyltransferase JOS67_12935 PF08335 GlnD PII-uridylyltransferase JOS67_12940 PF00672 HAMP domain JOS67_12940 PF02743 Cache domain JOS67_12940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_12950 PF01928 CYTH domain JOS67_12955 PF01865 Protein of unknown function DUF47 JOS67_12960 PF01384 Phosphate transporter family JOS67_12965 PF08239 Bacterial SH3 domain JOS67_12980 PF01471 Putative peptidoglycan binding domain JOS67_12980 PF13401 AAA domain JOS67_12985 PF01966 HD domain JOS67_12985 PF01743 Poly A polymerase head domain JOS67_12985 PF12627 Probable RNA and SrmB- binding site of polymerase A JOS67_12990 PF02673 Bacitracin resistance protein BacA JOS67_12995 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JOS67_13000 PF02152 Dihydroneopterin aldolase JOS67_13005 PF02660 Glycerol-3-phosphate acyltransferase JOS67_13010 PF12697 Alpha/beta hydrolase family JOS67_13015 PF00814 Glycoprotease family JOS67_13020 PF01165 Ribosomal protein S21 JOS67_13025 PF09424 Yqey-like protein JOS67_13030 PF08278 DNA primase DnaG DnaB-binding JOS67_13030 PF10410 DnaB-helicase binding domain of primase JOS67_13030 PF08275 DNA primase catalytic core, N-terminal domain JOS67_13030 PF01807 CHC2 zinc finger JOS67_13035 PF03979 Sigma-70 factor, region 1.1 JOS67_13035 PF04545 Sigma-70, region 4 JOS67_13035 PF00140 Sigma-70 factor, region 1.2 JOS67_13035 PF04546 Sigma-70, non-essential region JOS67_13035 PF04542 Sigma-70 region 2 JOS67_13035 PF04539 Sigma-70 region 3 JOS67_13045 PF03180 NLPA lipoprotein JOS67_13075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOS67_13075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOS67_13075 PF02378 Phosphotransferase system, EIIC JOS67_13080 PF01232 Mannitol dehydrogenase Rossmann domain JOS67_13080 PF08125 Mannitol dehydrogenase C-terminal domain JOS67_13085 PF05068 Mannitol repressor JOS67_13090 PF00158 Sigma-54 interaction domain JOS67_13090 PF00989 PAS fold JOS67_13090 PF02954 Bacterial regulatory protein, Fis family JOS67_13095 PF02896 PEP-utilising enzyme, TIM barrel domain JOS67_13095 PF00391 PEP-utilising enzyme, mobile domain JOS67_13095 PF05524 PEP-utilising enzyme, N-terminal JOS67_13100 PF02734 DAK2 domain JOS67_13105 PF02733 Dak1 domain JOS67_13110 PF00465 Iron-containing alcohol dehydrogenase JOS67_13115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_13115 PF00672 HAMP domain JOS67_13115 PF00512 His Kinase A (phospho-acceptor) domain JOS67_13120 PF00072 Response regulator receiver domain JOS67_13120 PF00486 Transcriptional regulatory protein, C terminal JOS67_13130 PF01380 SIS domain JOS67_13135 PF00455 DeoR C terminal sensor domain JOS67_13135 PF08220 DeoR-like helix-turn-helix domain JOS67_13140 PF00224 Pyruvate kinase, barrel domain JOS67_13140 PF02887 Pyruvate kinase, alpha/beta domain JOS67_13150 PF00990 Diguanylate cyclase, GGDEF domain JOS67_13155 PF10369 Small subunit of acetolactate synthase JOS67_13160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JOS67_13160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JOS67_13160 PF00205 Thiamine pyrophosphate enzyme, central domain JOS67_13170 PF00501 AMP-binding enzyme JOS67_13175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_13175 PF03466 LysR substrate binding domain JOS67_13185 PF01569 PAP2 superfamily JOS67_13195 PF08502 LeuA allosteric (dimerisation) domain JOS67_13195 PF00682 HMGL-like JOS67_13200 PF00180 Isocitrate/isopropylmalate dehydrogenase JOS67_13205 PF00330 Aconitase family (aconitate hydratase) JOS67_13210 PF00694 Aconitase C-terminal domain JOS67_13220 PF00226 DnaJ domain JOS67_13220 PF05099 Tellurite resistance protein TerB JOS67_13225 PF04453 LPS transport system D JOS67_13225 PF03968 OstA-like protein JOS67_13230 PF09312 SurA N-terminal domain JOS67_13235 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JOS67_13240 PF00398 Ribosomal RNA adenine dimethylase JOS67_13245 PF04379 ApaG domain JOS67_13250 PF00149 Calcineurin-like phosphoesterase JOS67_13255 PF00186 Dihydrofolate reductase JOS67_13260 PF12821 Threonine/Serine exporter, ThrE JOS67_13265 PF06738 Putative threonine/serine exporter JOS67_13270 PF01018 GTP1/OBG JOS67_13270 PF01926 50S ribosome-binding GTPase JOS67_13275 PF01016 Ribosomal L27 protein JOS67_13280 PF00829 Ribosomal prokaryotic L21 protein JOS67_13285 PF00348 Polyprenyl synthetase JOS67_13295 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JOS67_13295 PF00056 lactate/malate dehydrogenase, NAD binding domain JOS67_13300 PF02863 Arginine repressor, C-terminal domain JOS67_13300 PF01316 Arginine repressor, DNA binding domain JOS67_13305 PF16868 NMT1-like family JOS67_13320 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JOS67_13325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_13325 PF03466 LysR substrate binding domain JOS67_13330 PF00005 ABC transporter JOS67_13335 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_13345 PF02441 Flavoprotein JOS67_13350 PF02875 Mur ligase family, glutamate ligase domain JOS67_13350 PF01225 Mur ligase family, catalytic domain JOS67_13350 PF08245 Mur ligase middle domain JOS67_13355 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JOS67_13360 PF00719 Inorganic pyrophosphatase JOS67_13370 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like JOS67_13375 PF04357 TamB, inner membrane protein subunit of TAM complex JOS67_13380 PF17243 POTRA domain TamA domain 1 JOS67_13380 PF07244 Surface antigen variable number repeat JOS67_13380 PF01103 Surface antigen JOS67_13385 PF01625 Peptide methionine sulfoxide reductase JOS67_13390 PF06526 Protein of unknown function (DUF1107) JOS67_13395 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JOS67_13400 PF10795 Protein of unknown function (DUF2607) JOS67_13410 PF00005 ABC transporter JOS67_13435 PF02080 TrkA-C domain JOS67_13435 PF03600 Citrate transporter JOS67_13440 PF00009 Elongation factor Tu GTP binding domain JOS67_13445 PF01507 Phosphoadenosine phosphosulfate reductase family JOS67_13450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JOS67_13450 PF10414 Sirohaem synthase dimerisation region JOS67_13450 PF14824 Sirohaem biosynthesis protein central JOS67_13465 PF00270 DEAD/DEAH box helicase JOS67_13465 PF03880 DbpA RNA binding domain JOS67_13465 PF00271 Helicase conserved C-terminal domain JOS67_13470 PF13673 Acetyltransferase (GNAT) domain JOS67_13480 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JOS67_13480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JOS67_13490 PF01196 Ribosomal protein L17 JOS67_13495 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JOS67_13495 PF01000 RNA polymerase Rpb3/RpoA insert domain JOS67_13495 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JOS67_13500 PF01479 S4 domain JOS67_13500 PF00163 Ribosomal protein S4/S9 N-terminal domain JOS67_13505 PF00411 Ribosomal protein S11 JOS67_13510 PF00416 Ribosomal protein S13/S18 JOS67_13515 PF00444 Ribosomal protein L36 JOS67_13520 PF00344 SecY translocase JOS67_13525 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JOS67_13530 PF00327 Ribosomal protein L30p/L7e JOS67_13535 PF00333 Ribosomal protein S5, N-terminal domain JOS67_13535 PF03719 Ribosomal protein S5, C-terminal domain JOS67_13540 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JOS67_13545 PF00347 Ribosomal protein L6 JOS67_13550 PF00410 Ribosomal protein S8 JOS67_13555 PF00253 Ribosomal protein S14p/S29e JOS67_13560 PF00281 Ribosomal protein L5 JOS67_13560 PF00673 ribosomal L5P family C-terminus JOS67_13565 PF00467 KOW motif JOS67_13565 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JOS67_13570 PF00238 Ribosomal protein L14p/L23e JOS67_13575 PF00366 Ribosomal protein S17 JOS67_13580 PF00831 Ribosomal L29 protein JOS67_13585 PF00252 Ribosomal protein L16p/L10e JOS67_13590 PF00189 Ribosomal protein S3, C-terminal domain JOS67_13590 PF07650 KH domain JOS67_13595 PF00237 Ribosomal protein L22p/L17e JOS67_13600 PF00203 Ribosomal protein S19 JOS67_13605 PF00181 Ribosomal Proteins L2, RNA binding domain JOS67_13605 PF03947 Ribosomal Proteins L2, C-terminal domain JOS67_13610 PF00276 Ribosomal protein L23 JOS67_13615 PF00573 Ribosomal protein L4/L1 family JOS67_13620 PF00297 Ribosomal protein L3 JOS67_13625 PF00338 Ribosomal protein S10p/S20e JOS67_13630 PF01197 Ribosomal protein L31 JOS67_13635 PF17764 3′ DNA-binding domain (3′BD) JOS67_13635 PF18074 Primosomal protein N C-terminal domain JOS67_13635 PF00271 Helicase conserved C-terminal domain JOS67_13635 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JOS67_13635 PF00270 DEAD/DEAH box helicase JOS67_13640 PF00356 Bacterial regulatory proteins, lacI family JOS67_13655 PF12323 Helix-turn-helix domain JOS67_13665 PF00227 Proteasome subunit JOS67_13670 PF00004 ATPase family associated with various cellular activities (AAA) JOS67_13670 PF07724 AAA domain (Cdc48 subfamily) JOS67_13675 PF01040 UbiA prenyltransferase family JOS67_13680 PF03737 Aldolase/RraA JOS67_13685 PF06005 Cell division protein ZapB JOS67_13690 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JOS67_13695 PF00455 DeoR C terminal sensor domain JOS67_13695 PF08220 DeoR-like helix-turn-helix domain JOS67_13720 PF00121 Triosephosphate isomerase JOS67_13725 PF00483 Nucleotidyl transferase JOS67_13730 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JOS67_13730 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JOS67_13730 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JOS67_13765 PF13657 HipA N-terminal domain JOS67_13765 PF07804 HipA-like C-terminal domain JOS67_13860 PF13808 DDE_Tnp_1-associated JOS67_13860 PF01609 Transposase DDE domain JOS67_13865 PF01609 Transposase DDE domain JOS67_13865 PF13808 DDE_Tnp_1-associated JOS67_13875 PF02350 UDP-N-acetylglucosamine 2-epimerase JOS67_13880 PF01370 NAD dependent epimerase/dehydratase family JOS67_13885 PF08485 Polysaccharide biosynthesis protein C-terminal JOS67_13885 PF02719 Polysaccharide biosynthesis protein JOS67_13895 PF00534 Glycosyl transferases group 1 JOS67_13895 PF13439 Glycosyltransferase Family 4 JOS67_13900 PF13439 Glycosyltransferase Family 4 JOS67_13900 PF00534 Glycosyl transferases group 1 JOS67_13905 PF13808 DDE_Tnp_1-associated JOS67_13905 PF01609 Transposase DDE domain JOS67_13920 PF01370 NAD dependent epimerase/dehydratase family JOS67_13925 PF03279 Bacterial lipid A biosynthesis acyltransferase JOS67_13930 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) JOS67_13935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JOS67_13940 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JOS67_13945 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JOS67_13950 PF14602 Hexapeptide repeat of succinyl-transferase JOS67_13950 PF12464 Maltose acetyltransferase JOS67_13955 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JOS67_13955 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JOS67_13955 PF02142 MGS-like domain JOS67_13960 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 JOS67_13965 PF00483 Nucleotidyl transferase JOS67_13970 PF16363 GDP-mannose 4,6 dehydratase JOS67_13980 PF01219 Prokaryotic diacylglycerol kinase JOS67_13985 PF00534 Glycosyl transferases group 1 JOS67_13985 PF13439 Glycosyltransferase Family 4 JOS67_13990 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JOS67_13995 PF05686 Glycosyl transferase family 90 JOS67_14000 PF01467 Cytidylyltransferase-like JOS67_14015 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JOS67_14015 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JOS67_14015 PF06827 Zinc finger found in FPG and IleRS JOS67_14025 PF00471 Ribosomal protein L33 JOS67_14030 PF00830 Ribosomal L28 family JOS67_14035 PF04002 RadC-like JAB domain JOS67_14040 PF17200 Single Cache domain 2 JOS67_14040 PF00672 HAMP domain JOS67_14040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_14045 PF02441 Flavoprotein JOS67_14045 PF04127 DNA / pantothenate metabolism flavoprotein JOS67_14050 PF00440 Bacterial regulatory proteins, tetR family JOS67_14055 PF03279 Bacterial lipid A biosynthesis acyltransferase JOS67_14060 PF00156 Phosphoribosyl transferase domain JOS67_14065 PF03725 3' exoribonuclease family, domain 2 JOS67_14065 PF01138 3' exoribonuclease family, domain 1 JOS67_14070 PF03755 YicC-like family, N-terminal region JOS67_14070 PF08340 Domain of unknown function (DUF1732) JOS67_14080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS67_14080 PF00005 ABC transporter JOS67_14085 PF00005 ABC transporter JOS67_14085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS67_14090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JOS67_14095 PF12911 N-terminal TM domain of oligopeptide transport permease C JOS67_14095 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_14100 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_14105 PF00593 TonB dependent receptor JOS67_14105 PF07715 TonB-dependent Receptor Plug Domain JOS67_14120 PF01618 MotA/TolQ/ExbB proton channel family JOS67_14125 PF02472 Biopolymer transport protein ExbD/TolR JOS67_14140 PF00625 Guanylate kinase JOS67_14145 PF01192 RNA polymerase Rpb6 JOS67_14150 PF04607 Region found in RelA / SpoT proteins JOS67_14150 PF02824 TGS domain JOS67_14150 PF13291 ACT domain JOS67_14155 PF12105 SpoU, rRNA methylase, C-terminal JOS67_14155 PF00588 SpoU rRNA Methylase family JOS67_14160 PF00271 Helicase conserved C-terminal domain JOS67_14160 PF00270 DEAD/DEAH box helicase JOS67_14160 PF17191 RecG wedge domain JOS67_14165 PF00860 Permease family JOS67_14170 PF00512 His Kinase A (phospho-acceptor) domain JOS67_14170 PF00672 HAMP domain JOS67_14170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_14175 PF00072 Response regulator receiver domain JOS67_14175 PF00486 Transcriptional regulatory protein, C terminal JOS67_14185 PF01272 Transcription elongation factor, GreA/GreB, C-term JOS67_14185 PF03449 Transcription elongation factor, N-terminal JOS67_14195 PF17674 HHH domain JOS67_14195 PF00575 S1 RNA binding domain JOS67_14195 PF09371 Tex-like protein N-terminal domain JOS67_14195 PF16921 Tex protein YqgF-like domain JOS67_14205 PF00561 alpha/beta hydrolase fold JOS67_14210 PF00156 Phosphoribosyl transferase domain JOS67_14215 PF01521 Iron-sulphur cluster biosynthesis JOS67_14215 PF01106 NifU-like domain JOS67_14220 PF00293 NUDIX domain JOS67_14225 PF00459 Inositol monophosphatase family JOS67_14230 PF01203 Type II secretion system (T2SS), protein N JOS67_14235 PF04612 Type II secretion system (T2SS), protein M JOS67_14240 PF05134 Type II secretion system (T2SS), protein L JOS67_14240 PF12693 GspL periplasmic domain JOS67_14245 PF03934 Type II secretion system (T2SS), protein K JOS67_14250 PF11612 Type II secretion system (T2SS), protein J JOS67_14250 PF07963 Prokaryotic N-terminal methylation motif JOS67_14255 PF02501 Type II secretion system (T2SS), protein I JOS67_14255 PF07963 Prokaryotic N-terminal methylation motif JOS67_14260 PF12019 Type II transport protein GspH JOS67_14265 PF08334 Type II secretion system (T2SS), protein G JOS67_14265 PF07963 Prokaryotic N-terminal methylation motif JOS67_14270 PF00482 Type II secretion system (T2SS), protein F JOS67_14275 PF00437 Type II/IV secretion system protein JOS67_14280 PF00263 Bacterial type II and III secretion system protein JOS67_14280 PF03958 Bacterial type II/III secretion system short domain JOS67_14285 PF11356 Type II secretion system protein C JOS67_14290 PF01479 S4 domain JOS67_14295 PF01430 Hsp33 protein JOS67_14300 PF01293 Phosphoenolpyruvate carboxykinase JOS67_14310 PF09500 Putative thioesterase (yiiD_Cterm) JOS67_14310 PF00583 Acetyltransferase (GNAT) family JOS67_14315 PF02580 D-Tyr-tRNA(Tyr) deacylase JOS67_14320 PF03631 Virulence factor BrkB JOS67_14335 PF00679 Elongation factor G C-terminus JOS67_14335 PF00009 Elongation factor Tu GTP binding domain JOS67_14335 PF03144 Elongation factor Tu domain 2 JOS67_14340 PF03951 Glutamine synthetase, beta-Grasp domain JOS67_14340 PF00120 Glutamine synthetase, catalytic domain JOS67_14350 PF00989 PAS fold JOS67_14350 PF00512 His Kinase A (phospho-acceptor) domain JOS67_14350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_14355 PF02954 Bacterial regulatory protein, Fis family JOS67_14355 PF00072 Response regulator receiver domain JOS67_14355 PF00158 Sigma-54 interaction domain JOS67_14360 PF03707 Bacterial signalling protein N terminal repeat JOS67_14360 PF00563 EAL domain JOS67_14360 PF00990 Diguanylate cyclase, GGDEF domain JOS67_14365 PF00962 Adenosine/AMP deaminase JOS67_14370 PF04055 Radical SAM superfamily JOS67_14370 PF06969 HemN C-terminal domain JOS67_14375 PF10675 Protein of unknown function (DUF2489) JOS67_14380 PF04220 Der GTPase activator (YihI) JOS67_14390 PF00034 Cytochrome c JOS67_14395 PF01926 50S ribosome-binding GTPase JOS67_14400 PF01612 3'-5' exonuclease JOS67_14400 PF00476 DNA polymerase family A JOS67_14400 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JOS67_14400 PF01367 5'-3' exonuclease, C-terminal SAM fold JOS67_14405 PF00583 Acetyltransferase (GNAT) family JOS67_14410 PF00490 Delta-aminolevulinic acid dehydratase JOS67_14415 PF01026 TatD related DNase JOS67_14420 PF00902 Sec-independent protein translocase protein (TatC) JOS67_14425 PF02416 mttA/Hcf106 family JOS67_14430 PF02416 mttA/Hcf106 family JOS67_14435 PF03109 ABC1 family JOS67_14440 PF02036 SCP-2 sterol transfer family JOS67_14445 PF01209 ubiE/COQ5 methyltransferase family JOS67_14450 PF02646 RmuC family JOS67_14460 PF00563 EAL domain JOS67_14460 PF00990 Diguanylate cyclase, GGDEF domain JOS67_14460 PF03707 Bacterial signalling protein N terminal repeat JOS67_14465 PF01594 AI-2E family transporter JOS67_14495 PF00781 Diacylglycerol kinase catalytic domain JOS67_14520 PF02954 Bacterial regulatory protein, Fis family JOS67_14520 PF00072 Response regulator receiver domain JOS67_14520 PF00158 Sigma-54 interaction domain JOS67_14530 PF10625 Universal stress protein B (UspB) JOS67_14535 PF00210 Ferritin-like domain JOS67_14540 PF00582 Universal stress protein family JOS67_14545 PF00892 EamA-like transporter family JOS67_14555 PF04445 Putative SAM-dependent methyltransferase JOS67_14560 PF00563 EAL domain JOS67_14560 PF00990 Diguanylate cyclase, GGDEF domain JOS67_14560 PF08448 PAS fold JOS67_14565 PF01037 Lrp/AsnC ligand binding domain JOS67_14570 PF01432 Peptidase family M3 JOS67_14575 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JOS67_14580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JOS67_14580 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_14610 PF03466 LysR substrate binding domain JOS67_14610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_14615 PF01048 Phosphorylase superfamily JOS67_14620 PF01081 KDPG and KHG aldolase JOS67_14625 PF02447 GntP family permease JOS67_14630 PF01202 Shikimate kinase JOS67_14635 PF00920 Dehydratase family JOS67_14640 PF00893 Small Multidrug Resistance protein JOS67_14645 PF00893 Small Multidrug Resistance protein JOS67_14650 PF03466 LysR substrate binding domain JOS67_14650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_14655 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JOS67_14655 PF00356 Bacterial regulatory proteins, lacI family JOS67_14695 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_14695 PF12911 N-terminal TM domain of oligopeptide transport permease C JOS67_14700 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_14705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JOS67_14710 PF00005 ABC transporter JOS67_14710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS67_14715 PF13419 Haloacid dehalogenase-like hydrolase JOS67_14745 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JOS67_14750 PF00580 UvrD/REP helicase N-terminal domain JOS67_14750 PF13361 UvrD-like helicase C-terminal domain JOS67_14755 PF16295 Tetracyclin repressor-like, C-terminal domain JOS67_14755 PF00440 Bacterial regulatory proteins, tetR family JOS67_14760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_14765 PF00873 AcrB/AcrD/AcrF family JOS67_14770 PF04380 Membrane fusogenic activity JOS67_14775 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JOS67_14775 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JOS67_14780 PF03466 LysR substrate binding domain JOS67_14780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_14820 PF00132 Bacterial transferase hexapeptide (six repeats) JOS67_14825 PF07369 Protein of unknown function (DUF1488) JOS67_14830 PF08501 Shikimate dehydrogenase substrate binding domain JOS67_14830 PF01488 Shikimate / quinate 5-dehydrogenase JOS67_14830 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JOS67_14835 PF01218 Coproporphyrinogen III oxidase JOS67_14840 PF01300 Telomere recombination JOS67_14845 PF00731 AIR carboxylase JOS67_14850 PF02222 ATP-grasp domain JOS67_14850 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JOS67_14855 PF01396 Topoisomerase DNA binding C4 zinc finger JOS67_14860 PF04361 Protein of unknown function (DUF494) JOS67_14865 PF02481 DNA recombination-mediator protein A JOS67_14865 PF17782 DprA winged helix domain JOS67_14875 PF01327 Polypeptide deformylase JOS67_14880 PF00551 Formyl transferase JOS67_14880 PF02911 Formyl transferase, C-terminal domain JOS67_14885 PF01189 16S rRNA methyltransferase RsmB/F JOS67_14885 PF01029 NusB family JOS67_14890 PF02080 TrkA-C domain JOS67_14890 PF02254 TrkA-N domain JOS67_14895 PF02386 Cation transport protein JOS67_14905 PF03006 Haemolysin-III related JOS67_14910 PF07070 SpoOM protein JOS67_14920 PF06288 Protein of unknown function (DUF1040) JOS67_14925 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JOS67_14925 PF12801 4Fe-4S binding domain JOS67_14925 PF13746 4Fe-4S dicluster domain JOS67_14930 PF01636 Phosphotransferase enzyme family JOS67_14935 PF01323 DSBA-like thioredoxin domain JOS67_14940 PF01553 Acyltransferase JOS67_14955 PF00239 Resolvase, N terminal domain JOS67_14955 PF07508 Recombinase JOS67_14955 PF13408 Recombinase zinc beta ribbon domain JOS67_14965 PF00239 Resolvase, N terminal domain JOS67_14965 PF02796 Helix-turn-helix domain of resolvase JOS67_14975 PF13335 Magnesium chelatase, subunit ChlI C-terminal JOS67_14975 PF01078 Magnesium chelatase, subunit ChlI JOS67_14980 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JOS67_14980 PF00205 Thiamine pyrophosphate enzyme, central domain JOS67_14980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JOS67_14990 PF01063 Amino-transferase class IV JOS67_14995 PF00920 Dehydratase family JOS67_15000 PF00585 C-terminal regulatory domain of Threonine dehydratase JOS67_15000 PF00291 Pyridoxal-phosphate dependent enzyme JOS67_15005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_15005 PF03466 LysR substrate binding domain JOS67_15010 PF07690 Major Facilitator Superfamily JOS67_15015 PF00497 Bacterial extracellular solute-binding proteins, family 3 JOS67_15020 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_15025 PF00132 Bacterial transferase hexapeptide (six repeats) JOS67_15025 PF12804 MobA-like NTP transferase domain JOS67_15030 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JOS67_15030 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JOS67_15035 PF02874 ATP synthase alpha/beta family, beta-barrel domain JOS67_15035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOS67_15040 PF00231 ATP synthase JOS67_15045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOS67_15045 PF02874 ATP synthase alpha/beta family, beta-barrel domain JOS67_15045 PF00306 ATP synthase alpha/beta chain, C terminal domain JOS67_15050 PF00213 ATP synthase delta (OSCP) subunit JOS67_15055 PF00430 ATP synthase B/B' CF(0) JOS67_15060 PF00137 ATP synthase subunit C JOS67_15065 PF00119 ATP synthase A chain JOS67_15070 PF03899 ATP synthase I chain JOS67_15075 PF02195 ParB-like nuclease domain JOS67_15075 PF17762 HTH domain found in ParB protein JOS67_15080 PF13614 AAA domain JOS67_15085 PF02527 rRNA small subunit methyltransferase G JOS67_15090 PF01134 Glucose inhibited division protein A JOS67_15090 PF13932 GidA associated domain JOS67_15095 PF00258 Flavodoxin JOS67_15110 PF01381 Helix-turn-helix JOS67_15165 PF00271 Helicase conserved C-terminal domain JOS67_15165 PF02151 UvrB/uvrC motif JOS67_15165 PF04851 Type III restriction enzyme, res subunit JOS67_15165 PF17757 UvrB interaction domain JOS67_15165 PF12344 Ultra-violet resistance protein B JOS67_15175 PF13476 AAA domain JOS67_15185 PF00266 Aminotransferase class-V JOS67_15210 PF00589 Phage integrase family JOS67_15210 PF02899 Phage integrase, N-terminal SAM-like domain JOS67_15215 PF01926 50S ribosome-binding GTPase JOS67_15215 PF12631 MnmE helical domain JOS67_15215 PF10396 GTP-binding protein TrmE N-terminus JOS67_15220 PF02096 60Kd inner membrane protein JOS67_15220 PF14849 YidC periplasmic domain JOS67_15225 PF01809 Putative membrane protein insertion efficiency factor JOS67_15230 PF00825 Ribonuclease P JOS67_15235 PF00468 Ribosomal protein L34 JOS67_15240 PF00005 ABC transporter JOS67_15245 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_15250 PF00497 Bacterial extracellular solute-binding proteins, family 3 JOS67_15480 PF01051 Initiator Replication protein JOS67_15540 PF13614 AAA domain JOS67_15580 PF00154 recA bacterial DNA recombination protein JOS67_15655 PF01751 Toprim domain JOS67_15655 PF01131 DNA topoisomerase JOS67_15655 PF13342 C-terminal repeat of topoisomerase JOS67_15655 PF01396 Topoisomerase DNA binding C4 zinc finger JOS67_15665 PF13361 UvrD-like helicase C-terminal domain JOS67_15665 PF00580 UvrD/REP helicase N-terminal domain JOS67_15750 PF00302 Chloramphenicol acetyltransferase JOS67_15835 PF00873 AcrB/AcrD/AcrF family JOS67_15840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_15840 PF00529 HlyD membrane-fusion protein of T1SS JOS67_15905 PF06508 Queuosine biosynthesis protein QueC JOS67_15930 PF00186 Dihydrofolate reductase JOS67_15950 PF07690 Major Facilitator Superfamily JOS67_15955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_15955 PF03466 LysR substrate binding domain JOS67_15965 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase JOS67_15975 PF00440 Bacterial regulatory proteins, tetR family JOS67_15975 PF02909 Tetracyclin repressor-like, C-terminal domain JOS67_15980 PF07690 Major Facilitator Superfamily JOS67_15990 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase JOS67_15995 PF01636 Phosphotransferase enzyme family JOS67_16000 PF00809 Pterin binding enzyme JOS67_16060 PF01909 Nucleotidyltransferase domain JOS67_16060 PF13427 Domain of unknown function (DUF4111) JOS67_16135 PF00437 Type II/IV secretion system protein JOS67_16160 PF00437 Type II/IV secretion system protein JOS67_16235 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JOS67_16240 PF07969 Amidohydrolase family JOS67_16245 PF01966 HD domain JOS67_16255 PF07690 Major Facilitator Superfamily JOS67_16265 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JOS67_16270 PF00255 Glutathione peroxidase JOS67_16285 PF01323 DSBA-like thioredoxin domain JOS67_16300 PF00072 Response regulator receiver domain JOS67_16300 PF00486 Transcriptional regulatory protein, C terminal JOS67_16305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_16305 PF00672 HAMP domain JOS67_16305 PF00512 His Kinase A (phospho-acceptor) domain JOS67_16305 PF16527 Two-component sensor protein CpxA, periplasmic domain JOS67_16315 PF01219 Prokaryotic diacylglycerol kinase JOS67_16320 PF08019 Phosphoethanolamine transferase EptA/EptB JOS67_16320 PF00884 Sulfatase JOS67_16325 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JOS67_16340 PF01734 Patatin-like phospholipase JOS67_16345 PF05726 Pirin C-terminal cupin domain JOS67_16345 PF02678 Pirin JOS67_16350 PF00313 'Cold-shock' DNA-binding domain JOS67_16365 PF00962 Adenosine/AMP deaminase JOS67_16370 PF00462 Glutaredoxin JOS67_16370 PF08534 Redoxin JOS67_16380 PF07943 Penicillin-binding protein 5, C-terminal domain JOS67_16380 PF00768 D-alanyl-D-alanine carboxypeptidase JOS67_16385 PF02798 Glutathione S-transferase, N-terminal domain JOS67_16390 PF00251 Glycosyl hydrolases family 32 N-terminal domain JOS67_16390 PF08244 Glycosyl hydrolases family 32 C terminal JOS67_16395 PF00294 pfkB family carbohydrate kinase JOS67_16400 PF00367 phosphotransferase system, EIIB JOS67_16400 PF02378 Phosphotransferase system, EIIC JOS67_16405 PF00356 Bacterial regulatory proteins, lacI family JOS67_16410 PF02264 LamB porin JOS67_16410 PF11471 Maltoporin periplasmic N-terminal extension JOS67_16455 PF01497 Periplasmic binding protein JOS67_16455 PF12833 Helix-turn-helix domain JOS67_16460 PF00155 Aminotransferase class I and II JOS67_16485 PF08240 Alcohol dehydrogenase GroES-like domain JOS67_16485 PF00107 Zinc-binding dehydrogenase JOS67_16500 PF12833 Helix-turn-helix domain JOS67_16505 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JOS67_16510 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JOS67_16515 PF00155 Aminotransferase class I and II JOS67_16515 PF00392 Bacterial regulatory proteins, gntR family JOS67_16520 PF00557 Metallopeptidase family M24 JOS67_16520 PF01321 Creatinase/Prolidase N-terminal domain JOS67_16525 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JOS67_16535 PF01037 Lrp/AsnC ligand binding domain JOS67_16540 PF00171 Aldehyde dehydrogenase family JOS67_16545 PF00202 Aminotransferase class-III JOS67_16550 PF00291 Pyridoxal-phosphate dependent enzyme JOS67_16555 PF02423 Ornithine cyclodeaminase/mu-crystallin family JOS67_16565 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) JOS67_16570 PF01810 LysE type translocator JOS67_16580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_16580 PF03466 LysR substrate binding domain JOS67_16585 PF00709 Adenylosuccinate synthetase JOS67_16590 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JOS67_16590 PF13542 Helix-turn-helix domain of transposase family ISL3 JOS67_16590 PF01610 Transposase JOS67_16595 PF00710 Asparaginase, N-terminal JOS67_16595 PF17763 Glutaminase/Asparaginase C-terminal domain JOS67_16600 PF03618 Kinase/pyrophosphorylase JOS67_16605 PF02896 PEP-utilising enzyme, TIM barrel domain JOS67_16605 PF00391 PEP-utilising enzyme, mobile domain JOS67_16605 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JOS67_16615 PF00072 Response regulator receiver domain JOS67_16615 PF00196 Bacterial regulatory proteins, luxR family JOS67_16620 PF00579 tRNA synthetases class I (W and Y) JOS67_16630 PF03466 LysR substrate binding domain JOS67_16630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_16635 PF13533 Biotin-lipoyl like JOS67_16640 PF00873 AcrB/AcrD/AcrF family JOS67_16655 PF02837 Glycosyl hydrolases family 2, sugar binding domain JOS67_16655 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JOS67_16655 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JOS67_16655 PF00703 Glycosyl hydrolases family 2 JOS67_16660 PF02028 BCCT, betaine/carnitine/choline family transporter JOS67_16665 PF07702 UTRA domain JOS67_16665 PF00392 Bacterial regulatory proteins, gntR family JOS67_16690 PF08402 TOBE domain JOS67_16690 PF00005 ABC transporter JOS67_16715 PF13737 Transposase DDE domain JOS67_16720 PF00873 AcrB/AcrD/AcrF family JOS67_16730 PF13091 PLD-like domain JOS67_16755 PF00376 MerR family regulatory protein JOS67_16755 PF09278 MerR, DNA binding JOS67_16765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_16765 PF03466 LysR substrate binding domain JOS67_16775 PF13378 Enolase C-terminal domain-like JOS67_16775 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JOS67_16780 PF03144 Elongation factor Tu domain 2 JOS67_16780 PF00679 Elongation factor G C-terminus JOS67_16780 PF14492 Elongation Factor G, domain II JOS67_16780 PF03764 Elongation factor G, domain IV JOS67_16780 PF00009 Elongation factor Tu GTP binding domain JOS67_16805 PF02001 Protein of unknown function DUF134 JOS67_16810 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_16815 PF00005 ABC transporter JOS67_16815 PF00571 CBS domain JOS67_16820 PF04170 NlpE N-terminal domain JOS67_16820 PF17185 NlpE C-terminal OB domain JOS67_16825 PF06629 MltA-interacting protein MipA JOS67_16840 PF03466 LysR substrate binding domain JOS67_16840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_16865 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JOS67_16865 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JOS67_16875 PF00857 Isochorismatase family JOS67_16885 PF00455 DeoR C terminal sensor domain JOS67_16885 PF08220 DeoR-like helix-turn-helix domain JOS67_16890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JOS67_16895 PF01641 SelR domain JOS67_16895 PF01625 Peptide methionine sulfoxide reductase JOS67_16910 PF03060 Nitronate monooxygenase JOS67_16915 PF13520 Amino acid permease JOS67_16920 PF05985 Ethanolamine ammonia-lyase light chain (EutC) JOS67_16925 PF06751 Ethanolamine ammonia lyase large subunit (EutB) JOS67_16930 PF12833 Helix-turn-helix domain JOS67_16935 PF08359 YsiA-like protein, C-terminal region JOS67_16935 PF00440 Bacterial regulatory proteins, tetR family JOS67_16965 PF00118 TCP-1/cpn60 chaperonin family JOS67_16970 PF00166 Chaperonin 10 Kd subunit JOS67_16975 PF00581 Rhodanese-like domain JOS67_16990 PF01070 FMN-dependent dehydrogenase JOS67_17010 PF00669 Bacterial flagellin N-terminal helical region JOS67_17015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOS67_17015 PF00460 Flagella basal body rod protein JOS67_17020 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JOS67_17020 PF10135 Rod binding protein JOS67_17025 PF02119 Flagellar P-ring protein JOS67_17030 PF02107 Flagellar L-ring protein JOS67_17035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOS67_17035 PF00460 Flagella basal body rod protein JOS67_17040 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOS67_17040 PF00460 Flagella basal body rod protein JOS67_17045 PF07559 Flagellar basal body protein FlaE JOS67_17045 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOS67_17045 PF00460 Flagella basal body rod protein JOS67_17050 PF13860 FlgD Ig-like domain JOS67_17050 PF13861 FlgD Tudor-like domain JOS67_17050 PF03963 Flagellar hook capping protein - N-terminal region JOS67_17055 PF00460 Flagella basal body rod protein JOS67_17055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOS67_17060 PF00460 Flagella basal body rod protein JOS67_17080 PF01464 Transglycosylase SLT domain JOS67_17085 PF00133 tRNA synthetases class I (I, L, M and V) JOS67_17085 PF08264 Anticodon-binding domain of tRNA JOS67_17105 PF03313 Serine dehydratase alpha chain JOS67_17105 PF03315 Serine dehydratase beta chain JOS67_17110 PF00854 POT family JOS67_17120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_17120 PF03466 LysR substrate binding domain JOS67_17130 PF03466 LysR substrate binding domain JOS67_17130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_17135 PF01389 OmpA-like transmembrane domain JOS67_17135 PF00691 OmpA family JOS67_17140 PF00246 Zinc carboxypeptidase JOS67_17140 PF18027 Cytosolic carboxypeptidase N-terminal domain JOS67_17145 PF01266 FAD dependent oxidoreductase JOS67_17155 PF04393 Protein of unknown function (DUF535) JOS67_17170 PF00392 Bacterial regulatory proteins, gntR family JOS67_17170 PF07702 UTRA domain JOS67_17175 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_17180 PF00005 ABC transporter JOS67_17195 PF00266 Aminotransferase class-V JOS67_17200 PF00202 Aminotransferase class-III JOS67_17205 PF13419 Haloacid dehalogenase-like hydrolase JOS67_17210 PF00356 Bacterial regulatory proteins, lacI family JOS67_17215 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOS67_17225 PF03611 PTS system sugar-specific permease component JOS67_17235 PF00082 Subtilase family JOS67_17235 PF05922 Peptidase inhibitor I9 JOS67_17240 PF00657 GDSL-like Lipase/Acylhydrolase JOS67_17245 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JOS67_17250 PF00194 Eukaryotic-type carbonic anhydrase JOS67_17255 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JOS67_17270 PF13419 Haloacid dehalogenase-like hydrolase JOS67_17275 PF03466 LysR substrate binding domain JOS67_17275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_17310 PF12464 Maltose acetyltransferase JOS67_17310 PF14602 Hexapeptide repeat of succinyl-transferase JOS67_17315 PF02566 OsmC-like protein JOS67_17320 PF01641 SelR domain JOS67_17320 PF01625 Peptide methionine sulfoxide reductase JOS67_17335 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JOS67_17340 PF03441 FAD binding domain of DNA photolyase JOS67_17340 PF00875 DNA photolyase JOS67_17345 PF00990 Diguanylate cyclase, GGDEF domain JOS67_17360 PF05230 MASE2 domain JOS67_17360 PF00990 Diguanylate cyclase, GGDEF domain JOS67_17375 PF07670 Nucleoside recognition JOS67_17375 PF01773 Na+ dependent nucleoside transporter N-terminus JOS67_17375 PF07662 Na+ dependent nucleoside transporter C-terminus JOS67_17395 PF01212 Beta-eliminating lyase JOS67_17400 PF03116 NQR2, RnfD, RnfE family JOS67_17405 PF01654 Cytochrome bd terminal oxidase subunit I JOS67_17410 PF02322 Cytochrome bd terminal oxidase subunit II JOS67_17425 PF01266 FAD dependent oxidoreductase JOS67_17440 PF05525 Branched-chain amino acid transport protein JOS67_17445 PF00990 Diguanylate cyclase, GGDEF domain JOS67_17450 PF00072 Response regulator receiver domain JOS67_17450 PF02954 Bacterial regulatory protein, Fis family JOS67_17450 PF00158 Sigma-54 interaction domain JOS67_17455 PF00512 His Kinase A (phospho-acceptor) domain JOS67_17455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_17465 PF00232 Glycosyl hydrolase family 1 JOS67_17490 PF03466 LysR substrate binding domain JOS67_17490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_17495 PF18030 RimK PreATP-grasp domain JOS67_17495 PF08443 RimK-like ATP-grasp domain JOS67_17500 PF18030 RimK PreATP-grasp domain JOS67_17500 PF08443 RimK-like ATP-grasp domain JOS67_17505 PF00753 Metallo-beta-lactamase superfamily JOS67_17510 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JOS67_17510 PF17810 Arginine decarboxylase helical bundle domain JOS67_17510 PF17944 Arginine decarboxylase C-terminal helical extension JOS67_17515 PF00491 Arginase family JOS67_17520 PF07690 Major Facilitator Superfamily JOS67_17525 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JOS67_17525 PF00326 Prolyl oligopeptidase family JOS67_17540 PF00950 ABC 3 transport family JOS67_17545 PF00005 ABC transporter JOS67_17595 PF02472 Biopolymer transport protein ExbD/TolR JOS67_17600 PF01618 MotA/TolQ/ExbB proton channel family JOS67_17605 PF01618 MotA/TolQ/ExbB proton channel family JOS67_17615 PF00593 TonB dependent receptor JOS67_17615 PF07715 TonB-dependent Receptor Plug Domain JOS67_17620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_17620 PF16750 Sensor domain of 2-component histidine kinase JOS67_17620 PF00672 HAMP domain JOS67_17620 PF00512 His Kinase A (phospho-acceptor) domain JOS67_17625 PF00072 Response regulator receiver domain JOS67_17625 PF00486 Transcriptional regulatory protein, C terminal JOS67_17630 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JOS67_17630 PF00056 lactate/malate dehydrogenase, NAD binding domain JOS67_17635 PF03009 Glycerophosphoryl diester phosphodiesterase family JOS67_17645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JOS67_17645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JOS67_17650 PF10928 Protein of unknown function (DUF2810) JOS67_17705 PF04013 Putative SAM-dependent RNA methyltransferase JOS67_17710 PF01523 Putative modulator of DNA gyrase JOS67_17715 PF01523 Putative modulator of DNA gyrase JOS67_17720 PF08543 Phosphomethylpyrimidine kinase JOS67_17725 PF00005 ABC transporter JOS67_17730 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_17735 PF09084 NMT1/THI5 like JOS67_17740 PF03070 TENA/THI-4/PQQC family JOS67_17745 PF02110 Hydroxyethylthiazole kinase family JOS67_17750 PF02581 Thiamine monophosphate synthase JOS67_17760 PF01568 Molydopterin dinucleotide binding domain JOS67_17760 PF18364 Molybdopterin oxidoreductase N-terminal domain JOS67_17760 PF00384 Molybdopterin oxidoreductase JOS67_17765 PF03264 NapC/NirT cytochrome c family, N-terminal region JOS67_17770 PF13302 Acetyltransferase (GNAT) domain JOS67_17790 PF00583 Acetyltransferase (GNAT) family JOS67_17810 PF00392 Bacterial regulatory proteins, gntR family JOS67_17810 PF00155 Aminotransferase class I and II JOS67_17815 PF02595 Glycerate kinase family JOS67_17820 PF02447 GntP family permease JOS67_17825 PF05651 Putative sugar diacid recognition JOS67_17825 PF17853 GGDEF-like domain JOS67_17825 PF13556 PucR C-terminal helix-turn-helix domain JOS67_17850 PF13419 Haloacid dehalogenase-like hydrolase JOS67_17865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JOS67_17870 PF12706 Beta-lactamase superfamily domain JOS67_17880 PF07690 Major Facilitator Superfamily JOS67_17885 PF13533 Biotin-lipoyl like JOS67_17890 PF03922 OmpW family JOS67_17895 PF13599 Pentapeptide repeats (9 copies) JOS67_17910 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JOS67_17910 PF18416 N-acetylglucosamine binding protein domain 2 JOS67_17915 PF01037 Lrp/AsnC ligand binding domain JOS67_17920 PF01810 LysE type translocator JOS67_17925 PF00326 Prolyl oligopeptidase family JOS67_17930 PF04954 Siderophore-interacting protein JOS67_17930 PF08021 Siderophore-interacting FAD-binding domain JOS67_17935 PF03466 LysR substrate binding domain JOS67_17935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_17940 PF00797 N-acetyltransferase JOS67_17945 PF08240 Alcohol dehydrogenase GroES-like domain JOS67_17945 PF00107 Zinc-binding dehydrogenase JOS67_17950 PF00756 Putative esterase JOS67_17960 PF17152 Periplasmic sensor domain JOS67_17960 PF00990 Diguanylate cyclase, GGDEF domain JOS67_17975 PF03466 LysR substrate binding domain JOS67_17975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_17990 PF00849 RNA pseudouridylate synthase JOS67_17995 PF01554 MatE JOS67_18000 PF00563 EAL domain JOS67_18000 PF00990 Diguanylate cyclase, GGDEF domain JOS67_18000 PF03707 Bacterial signalling protein N terminal repeat JOS67_18010 PF06865 Pyrimidine/purine nucleoside phosphorylase JOS67_18020 PF00704 Glycosyl hydrolases family 18 JOS67_18020 PF08329 Chitinase A, N-terminal domain JOS67_18025 PF12697 Alpha/beta hydrolase family JOS67_18040 PF03600 Citrate transporter JOS67_18050 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JOS67_18060 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JOS67_18060 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JOS67_18065 PF06029 AlkA N-terminal domain JOS67_18065 PF00730 HhH-GPD superfamily base excision DNA repair protein JOS67_18075 PF07681 DoxX JOS67_18080 PF17954 Quercetinase C-terminal cupin domain JOS67_18080 PF02678 Pirin JOS67_18085 PF03466 LysR substrate binding domain JOS67_18085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_18100 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JOS67_18110 PF03616 Sodium/glutamate symporter JOS67_18115 PF00392 Bacterial regulatory proteins, gntR family JOS67_18115 PF00155 Aminotransferase class I and II JOS67_18120 PF00005 ABC transporter JOS67_18130 PF03616 Sodium/glutamate symporter JOS67_18145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_18145 PF17200 Single Cache domain 2 JOS67_18145 PF00672 HAMP domain JOS67_18150 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JOS67_18160 PF00072 Response regulator receiver domain JOS67_18160 PF04397 LytTr DNA-binding domain JOS67_18165 PF06580 Histidine kinase JOS67_18165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_18165 PF13492 GAF domain JOS67_18165 PF07694 5TMR of 5TMR-LYT JOS67_18185 PF00005 ABC transporter JOS67_18200 PF01098 Cell cycle protein JOS67_18205 PF01709 Transcriptional regulator JOS67_18215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_18215 PF17149 Periplasmic sensor domain found in signal transduction proteins JOS67_18215 PF00672 HAMP domain JOS67_18215 PF00072 Response regulator receiver domain JOS67_18215 PF00512 His Kinase A (phospho-acceptor) domain JOS67_18215 PF01627 Hpt domain JOS67_18225 PF00925 GTP cyclohydrolase II JOS67_18225 PF08719 Domain of unknown function (DUF1768) JOS67_18235 PF00005 ABC transporter JOS67_18235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS67_18240 PF00005 ABC transporter JOS67_18240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS67_18255 PF18607 ParA helix turn helix domain JOS67_18255 PF13614 AAA domain JOS67_18260 PF02195 ParB-like nuclease domain JOS67_18260 PF08775 ParB family JOS67_18265 PF13718 GNAT acetyltransferase 2 JOS67_18265 PF05127 Helicase JOS67_18275 PF00132 Bacterial transferase hexapeptide (six repeats) JOS67_18280 PF03466 LysR substrate binding domain JOS67_18280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_18285 PF00267 Gram-negative porin JOS67_18290 PF00367 phosphotransferase system, EIIB JOS67_18290 PF02378 Phosphotransferase system, EIIC JOS67_18295 PF01380 SIS domain JOS67_18300 PF01380 SIS domain JOS67_18300 PF01418 Helix-turn-helix domain, rpiR family JOS67_18305 PF00246 Zinc carboxypeptidase JOS67_18310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JOS67_18315 PF03358 NADPH-dependent FMN reductase JOS67_18325 PF03412 Peptidase C39 family JOS67_18325 PF00664 ABC transporter transmembrane region JOS67_18325 PF00005 ABC transporter JOS67_18340 PF00529 HlyD membrane-fusion protein of T1SS JOS67_18345 PF00158 Sigma-54 interaction domain JOS67_18345 PF00072 Response regulator receiver domain JOS67_18345 PF02954 Bacterial regulatory protein, Fis family JOS67_18350 PF02743 Cache domain JOS67_18350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_18350 PF00512 His Kinase A (phospho-acceptor) domain JOS67_18355 PF01243 Pyridoxamine 5'-phosphate oxidase JOS67_18355 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JOS67_18365 PF12833 Helix-turn-helix domain JOS67_18370 PF14850 DNA-binding domain of Proline dehydrogenase JOS67_18370 PF00171 Aldehyde dehydrogenase family JOS67_18370 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JOS67_18370 PF01619 Proline dehydrogenase JOS67_18380 PF00474 Sodium:solute symporter family JOS67_18395 PF13302 Acetyltransferase (GNAT) domain JOS67_18405 PF01037 Lrp/AsnC ligand binding domain JOS67_18415 PF00005 ABC transporter JOS67_18415 PF00664 ABC transporter transmembrane region JOS67_18425 PF06719 AraC-type transcriptional regulator N-terminus JOS67_18425 PF12833 Helix-turn-helix domain JOS67_18450 PF03475 3-alpha domain JOS67_18450 PF03473 MOSC domain JOS67_18470 PF08281 Sigma-70, region 4 JOS67_18470 PF04542 Sigma-70 region 2 JOS67_18475 PF12833 Helix-turn-helix domain JOS67_18475 PF01965 DJ-1/PfpI family JOS67_18480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_18480 PF03466 LysR substrate binding domain JOS67_18495 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_18495 PF13192 Thioredoxin domain JOS67_18500 PF10417 C-terminal domain of 1-Cys peroxiredoxin JOS67_18500 PF00578 AhpC/TSA family JOS67_18505 PF01047 MarR family JOS67_18510 PF02566 OsmC-like protein JOS67_18525 PF12704 MacB-like periplasmic core domain JOS67_18525 PF02687 FtsX-like permease family JOS67_18530 PF00005 ABC transporter JOS67_18545 PF00535 Glycosyl transferase family 2 JOS67_18555 PF08241 Methyltransferase domain JOS67_18565 PF01136 Peptidase family U32 JOS67_18575 PF00367 phosphotransferase system, EIIB JOS67_18575 PF02378 Phosphotransferase system, EIIC JOS67_18580 PF00072 Response regulator receiver domain JOS67_18580 PF00486 Transcriptional regulatory protein, C terminal JOS67_18585 PF08521 Two-component sensor kinase N-terminal JOS67_18585 PF00512 His Kinase A (phospho-acceptor) domain JOS67_18585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_18590 PF01547 Bacterial extracellular solute-binding protein JOS67_18595 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JOS67_18595 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JOS67_18600 PF06276 Ferric iron reductase FhuF-like transporter JOS67_18600 PF04183 IucA / IucC family JOS67_18610 PF04183 IucA / IucC family JOS67_18610 PF06276 Ferric iron reductase FhuF-like transporter JOS67_18615 PF00206 Lyase JOS67_18615 PF02655 ATP-grasp domain JOS67_18620 PF00593 TonB dependent receptor JOS67_18620 PF07715 TonB-dependent Receptor Plug Domain JOS67_18625 PF07660 Secretin and TonB N terminus short domain JOS67_18625 PF07715 TonB-dependent Receptor Plug Domain JOS67_18625 PF00593 TonB dependent receptor JOS67_18630 PF01497 Periplasmic binding protein JOS67_18635 PF01032 FecCD transport family JOS67_18640 PF01032 FecCD transport family JOS67_18645 PF00005 ABC transporter JOS67_18650 PF17200 Single Cache domain 2 JOS67_18650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_18650 PF00672 HAMP domain JOS67_18655 PF05193 Peptidase M16 inactive domain JOS67_18655 PF00675 Insulinase (Peptidase family M16) JOS67_18665 PF04225 Opacity-associated protein A LysM-like domain JOS67_18665 PF01551 Peptidase family M23 JOS67_18690 PF07690 Major Facilitator Superfamily JOS67_18700 PF00128 Alpha amylase, catalytic domain JOS67_18700 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JOS67_18705 PF02264 LamB porin JOS67_18720 PF00128 Alpha amylase, catalytic domain JOS67_18720 PF02903 Alpha amylase, N-terminal ig-like domain JOS67_18720 PF16657 Maltogenic Amylase, C-terminal domain JOS67_18725 PF04231 Endonuclease I JOS67_18730 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JOS67_18730 PF11852 Domain of unknown function (DUF3372) JOS67_18730 PF17967 Pullulanase N2 domain JOS67_18730 PF03714 Bacterial pullanase-associated domain JOS67_18730 PF18494 Pullulanase Ins domain JOS67_18745 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JOS67_18745 PF01276 Orn/Lys/Arg decarboxylase, major domain JOS67_18745 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JOS67_18750 PF13520 Amino acid permease JOS67_18760 PF08543 Phosphomethylpyrimidine kinase JOS67_18765 PF00375 Sodium:dicarboxylate symporter family JOS67_18770 PF03193 RsgA GTPase JOS67_18775 PF00367 phosphotransferase system, EIIB JOS67_18775 PF02378 Phosphotransferase system, EIIC JOS67_18780 PF02630 SCO1/SenC JOS67_18795 PF17874 MalT-like TPR region JOS67_18795 PF00196 Bacterial regulatory proteins, luxR family JOS67_18800 PF00343 Carbohydrate phosphorylase JOS67_18805 PF02446 4-alpha-glucanotransferase JOS67_18810 PF00128 Alpha amylase, catalytic domain JOS67_18810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JOS67_18810 PF02806 Alpha amylase, C-terminal all-beta domain JOS67_18815 PF00912 Transglycosylase JOS67_18820 PF00128 Alpha amylase, catalytic domain JOS67_18835 PF07670 Nucleoside recognition JOS67_18840 PF07670 Nucleoside recognition JOS67_18845 PF01546 Peptidase family M20/M25/M40 JOS67_18845 PF07687 Peptidase dimerisation domain JOS67_18850 PF06803 Protein of unknown function (DUF1232) JOS67_18855 PF00375 Sodium:dicarboxylate symporter family JOS67_18865 PF02706 Chain length determinant protein JOS67_18865 PF13614 AAA domain JOS67_18865 PF13807 G-rich domain on putative tyrosine kinase JOS67_18870 PF01451 Low molecular weight phosphotyrosine protein phosphatase JOS67_18875 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JOS67_18875 PF02563 Polysaccharide biosynthesis/export protein JOS67_18875 PF10531 SLBB domain JOS67_18885 PF00881 Nitroreductase family JOS67_18890 PF01914 MarC family integral membrane protein JOS67_18895 PF01734 Patatin-like phospholipase JOS67_18900 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JOS67_18900 PF18416 N-acetylglucosamine binding protein domain 2 JOS67_18905 PF02469 Fasciclin domain JOS67_18920 PF00581 Rhodanese-like domain JOS67_18920 PF17773 UPF0176 acylphosphatase like domain JOS67_18925 PF00561 alpha/beta hydrolase fold JOS67_18930 PF07943 Penicillin-binding protein 5, C-terminal domain JOS67_18930 PF00768 D-alanyl-D-alanine carboxypeptidase JOS67_18935 PF00128 Alpha amylase, catalytic domain JOS67_18935 PF00686 Starch binding domain JOS67_18940 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JOS67_18940 PF12833 Helix-turn-helix domain JOS67_18945 PF00881 Nitroreductase family JOS67_18955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_18955 PF03466 LysR substrate binding domain JOS67_18960 PF09905 DNA-binding protein VF530 JOS67_18970 PF00175 Oxidoreductase NAD-binding domain JOS67_18970 PF00970 Oxidoreductase FAD-binding domain JOS67_18975 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JOS67_18980 PF01594 AI-2E family transporter JOS67_18990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_18990 PF00529 HlyD membrane-fusion protein of T1SS JOS67_19010 PF00892 EamA-like transporter family JOS67_19015 PF03466 LysR substrate binding domain JOS67_19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_19020 PF07690 Major Facilitator Superfamily JOS67_19030 PF00583 Acetyltransferase (GNAT) family JOS67_19040 PF00923 Transaldolase/Fructose-6-phosphate aldolase JOS67_19045 PF04055 Radical SAM superfamily JOS67_19050 PF02901 Pyruvate formate lyase-like JOS67_19050 PF01228 Glycine radical JOS67_19085 PF08000 Bacterial PH domain JOS67_19095 PF00691 OmpA family JOS67_19095 PF13677 Membrane MotB of proton-channel complex MotA/MotB JOS67_19100 PF01618 MotA/TolQ/ExbB proton channel family JOS67_19105 PF04542 Sigma-70 region 2 JOS67_19105 PF04545 Sigma-70, region 4 JOS67_19110 PF03748 Flagellar basal body-associated protein FliL JOS67_19125 PF02561 Flagellar protein FliS JOS67_19130 PF07195 Flagellar hook-associated protein 2 C-terminus JOS67_19130 PF02465 Flagellar hook-associated protein 2 N-terminus JOS67_19130 PF07196 Flagellin hook IN motif JOS67_19140 PF00700 Bacterial flagellin C-terminal helical region JOS67_19140 PF00669 Bacterial flagellin N-terminal helical region JOS67_19150 PF00771 FHIPEP family JOS67_19155 PF01312 FlhB HrpN YscU SpaS Family JOS67_19160 PF01311 Bacterial export proteins, family 1 JOS67_19165 PF01313 Bacterial export proteins, family 3 JOS67_19170 PF00813 FliP family JOS67_19175 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JOS67_19190 PF00158 Sigma-54 interaction domain JOS67_19190 PF00072 Response regulator receiver domain JOS67_19190 PF02954 Bacterial regulatory protein, Fis family JOS67_19195 PF02049 Flagellar hook-basal body complex protein FliE JOS67_19200 PF01514 Secretory protein of YscJ/FliF family JOS67_19200 PF08345 Flagellar M-ring protein C-terminal JOS67_19205 PF14842 FliG N-terminal domain JOS67_19205 PF14841 FliG middle domain JOS67_19205 PF01706 FliG C-terminal domain JOS67_19215 PF18269 T3SS EscN ATPase C-terminal domain JOS67_19215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOS67_19230 PF03466 LysR substrate binding domain JOS67_19230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_19260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JOS67_19265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_19265 PF03466 LysR substrate binding domain JOS67_19285 PF00072 Response regulator receiver domain JOS67_19285 PF00486 Transcriptional regulatory protein, C terminal JOS67_19290 PF00512 His Kinase A (phospho-acceptor) domain JOS67_19290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_19295 PF00080 Copper/zinc superoxide dismutase (SODC) JOS67_19305 PF00497 Bacterial extracellular solute-binding proteins, family 3 JOS67_19310 PF13188 PAS domain JOS67_19310 PF00563 EAL domain JOS67_19310 PF03707 Bacterial signalling protein N terminal repeat JOS67_19310 PF00990 Diguanylate cyclase, GGDEF domain JOS67_19315 PF00155 Aminotransferase class I and II JOS67_19320 PF00107 Zinc-binding dehydrogenase JOS67_19320 PF08240 Alcohol dehydrogenase GroES-like domain JOS67_19350 PF00194 Eukaryotic-type carbonic anhydrase JOS67_19355 PF00924 Mechanosensitive ion channel JOS67_19365 PF01070 FMN-dependent dehydrogenase JOS67_19370 PF02652 L-lactate permease JOS67_19375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_19375 PF03466 LysR substrate binding domain JOS67_19380 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JOS67_19380 PF00326 Prolyl oligopeptidase family JOS67_19385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JOS67_19385 PF00005 ABC transporter JOS67_19395 PF13654 AAA domain JOS67_19395 PF05362 Lon protease (S16) C-terminal proteolytic domain JOS67_19400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_19400 PF00672 HAMP domain JOS67_19400 PF17200 Single Cache domain 2 JOS67_19405 PF13609 Gram-negative porin JOS67_19410 PF07238 PilZ domain JOS67_19410 PF12945 Flagellar protein YcgR JOS67_19425 PF00583 Acetyltransferase (GNAT) family JOS67_19430 PF12838 4Fe-4S dicluster domain JOS67_19430 PF12800 4Fe-4S binding domain JOS67_19435 PF12801 4Fe-4S binding domain JOS67_19435 PF13237 4Fe-4S dicluster domain JOS67_19455 PF12558 ATP-binding cassette cobalt transporter JOS67_19455 PF00005 ABC transporter JOS67_19460 PF07155 ECF-type riboflavin transporter, S component JOS67_19465 PF00529 HlyD membrane-fusion protein of T1SS JOS67_19465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_19470 PF11742 Protein of unknown function (DUF3302) JOS67_19475 PF00990 Diguanylate cyclase, GGDEF domain JOS67_19490 PF01048 Phosphorylase superfamily JOS67_19495 PF08349 Protein of unknown function (DUF1722) JOS67_19500 PF13411 MerR HTH family regulatory protein JOS67_19505 PF03441 FAD binding domain of DNA photolyase JOS67_19505 PF00875 DNA photolyase JOS67_19510 PF03734 L,D-transpeptidase catalytic domain JOS67_19510 PF17969 L,D-transpeptidase C-terminal domain JOS67_19510 PF01476 LysM domain JOS67_19520 PF00270 DEAD/DEAH box helicase JOS67_19520 PF00271 Helicase conserved C-terminal domain JOS67_19525 PF00326 Prolyl oligopeptidase family JOS67_19525 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JOS67_19530 PF07715 TonB-dependent Receptor Plug Domain JOS67_19530 PF00593 TonB dependent receptor JOS67_19550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_19550 PF00672 HAMP domain JOS67_19550 PF12729 Four helix bundle sensory module for signal transduction JOS67_19555 PF12849 PBP superfamily domain JOS67_19560 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_19565 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_19570 PF00005 ABC transporter JOS67_19585 PF13519 von Willebrand factor type A domain JOS67_19590 PF13519 von Willebrand factor type A domain JOS67_19600 PF01882 Protein of unknown function DUF58 JOS67_19605 PF17863 AAA lid domain JOS67_19605 PF07726 ATPase family associated with various cellular activities (AAA) JOS67_19610 PF00672 HAMP domain JOS67_19610 PF02743 Cache domain JOS67_19610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_19625 PF13737 Transposase DDE domain JOS67_19640 PF00664 ABC transporter transmembrane region JOS67_19640 PF00005 ABC transporter JOS67_19645 PF00529 HlyD membrane-fusion protein of T1SS JOS67_19655 PF01032 FecCD transport family JOS67_19660 PF01497 Periplasmic binding protein JOS67_19665 PF00005 ABC transporter JOS67_19670 PF07715 TonB-dependent Receptor Plug Domain JOS67_19670 PF00593 TonB dependent receptor JOS67_19675 PF00005 ABC transporter JOS67_19675 PF00664 ABC transporter transmembrane region JOS67_19680 PF13493 Domain of unknown function (DUF4118) JOS67_19680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_19680 PF00512 His Kinase A (phospho-acceptor) domain JOS67_19680 PF02702 Osmosensitive K+ channel His kinase sensor domain JOS67_19680 PF13493 Domain of unknown function (DUF4118) JOS67_19680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_19680 PF02702 Osmosensitive K+ channel His kinase sensor domain JOS67_19680 PF00512 His Kinase A (phospho-acceptor) domain JOS67_19685 PF00486 Transcriptional regulatory protein, C terminal JOS67_19685 PF00072 Response regulator receiver domain JOS67_19690 PF02080 TrkA-C domain JOS67_19690 PF02254 TrkA-N domain JOS67_19695 PF02386 Cation transport protein JOS67_19700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_19700 PF03466 LysR substrate binding domain JOS67_19705 PF02028 BCCT, betaine/carnitine/choline family transporter JOS67_19710 PF00355 Rieske [2Fe-2S] domain JOS67_19710 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JOS67_19715 PF00171 Aldehyde dehydrogenase family JOS67_19720 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_19720 PF18113 Rubredoxin binding C-terminal domain JOS67_19725 PF01266 FAD dependent oxidoreductase JOS67_19735 PF02378 Phosphotransferase system, EIIC JOS67_19740 PF00127 Copper binding proteins, plastocyanin/azurin family JOS67_19745 PF13419 Haloacid dehalogenase-like hydrolase JOS67_19755 PF01238 Phosphomannose isomerase type I JOS67_19760 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOS67_19760 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOS67_19765 PF12833 Helix-turn-helix domain JOS67_19775 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOS67_19785 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JOS67_19785 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JOS67_19790 PF00199 Catalase JOS67_19790 PF06628 Catalase-related immune-responsive JOS67_19795 PF13417 Glutathione S-transferase, N-terminal domain JOS67_19800 PF16884 N-terminal domain of oxidoreductase JOS67_19800 PF00107 Zinc-binding dehydrogenase JOS67_19805 PF16925 Tetracyclin repressor-like, C-terminal domain JOS67_19805 PF00440 Bacterial regulatory proteins, tetR family JOS67_19810 PF04266 ASCH domain JOS67_19840 PF00534 Glycosyl transferases group 1 JOS67_19840 PF13439 Glycosyltransferase Family 4 JOS67_19850 PF13614 AAA domain JOS67_19850 PF02706 Chain length determinant protein JOS67_19850 PF13807 G-rich domain on putative tyrosine kinase JOS67_19865 PF02397 Bacterial sugar transferase JOS67_19870 PF00005 ABC transporter JOS67_19870 PF08402 TOBE domain JOS67_19875 PF01547 Bacterial extracellular solute-binding protein JOS67_19880 PF14785 Maltose transport system permease protein MalF P2 domain JOS67_19880 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_19885 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_19915 PF05661 Protein of unknown function (DUF808) JOS67_19920 PF01979 Amidohydrolase family JOS67_19925 PF01679 Proteolipid membrane potential modulator JOS67_19930 PF03473 MOSC domain JOS67_19930 PF03476 MOSC N-terminal beta barrel domain JOS67_19930 PF03476 MOSC N-terminal beta barrel domain JOS67_19930 PF00111 2Fe-2S iron-sulfur cluster binding domain JOS67_19930 PF03473 MOSC domain JOS67_19930 PF00111 2Fe-2S iron-sulfur cluster binding domain JOS67_19935 PF02540 NAD synthase JOS67_19940 PF01467 Cytidylyltransferase-like JOS67_19980 PF00005 ABC transporter JOS67_19985 PF01032 FecCD transport family JOS67_19995 PF02472 Biopolymer transport protein ExbD/TolR JOS67_20000 PF01618 MotA/TolQ/ExbB proton channel family JOS67_20005 PF03544 Gram-negative bacterial TonB protein C-terminal JOS67_20010 PF04055 Radical SAM superfamily JOS67_20015 PF06228 Haem utilisation ChuX/HutX JOS67_20020 PF01243 Pyridoxamine 5'-phosphate oxidase JOS67_20030 PF01584 CheW-like domain JOS67_20030 PF00072 Response regulator receiver domain JOS67_20050 PF02583 Metal-sensitive transcriptional repressor JOS67_20055 PF03824 High-affinity nickel-transport protein JOS67_20065 PF02743 Cache domain JOS67_20065 PF00672 HAMP domain JOS67_20065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_20070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_20070 PF03466 LysR substrate binding domain JOS67_20075 PF17848 Acetyl-coA carboxylase zinc finger domain JOS67_20075 PF01039 Carboxyl transferase domain JOS67_20085 PF01752 Collagenase JOS67_20085 PF08453 Peptidase family M9 N-terminal JOS67_20085 PF04151 Bacterial pre-peptidase C-terminal domain JOS67_20095 PF02627 Carboxymuconolactone decarboxylase family JOS67_20100 PF13411 MerR HTH family regulatory protein JOS67_20105 PF00128 Alpha amylase, catalytic domain JOS67_20115 PF13808 DDE_Tnp_1-associated JOS67_20115 PF01609 Transposase DDE domain JOS67_20130 PF02254 TrkA-N domain JOS67_20130 PF00999 Sodium/hydrogen exchanger family JOS67_20135 PF02525 Flavodoxin-like fold JOS67_20140 PF00582 Universal stress protein family JOS67_20145 PF12848 ABC transporter JOS67_20145 PF16326 ABC transporter C-terminal domain JOS67_20145 PF00005 ABC transporter JOS67_20160 PF13533 Biotin-lipoyl like JOS67_20165 PF00873 AcrB/AcrD/AcrF family JOS67_20170 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JOS67_20180 PF13302 Acetyltransferase (GNAT) domain JOS67_20190 PF00990 Diguanylate cyclase, GGDEF domain JOS67_20190 PF17151 Periplasmic sensor domain JOS67_20210 PF00873 AcrB/AcrD/AcrF family JOS67_20250 PF00005 ABC transporter JOS67_20260 PF10282 Lactonase, 7-bladed beta-propeller JOS67_20265 PF02567 Phenazine biosynthesis-like protein JOS67_20270 PF01161 Phosphatidylethanolamine-binding protein JOS67_20280 PF01758 Sodium Bile acid symporter family JOS67_20295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOS67_20300 PF02378 Phosphotransferase system, EIIC JOS67_20300 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOS67_20305 PF00107 Zinc-binding dehydrogenase JOS67_20305 PF08240 Alcohol dehydrogenase GroES-like domain JOS67_20335 PF03222 Tryptophan/tyrosine permease family JOS67_20345 PF02743 Cache domain JOS67_20345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_20345 PF00672 HAMP domain JOS67_20350 PF07670 Nucleoside recognition JOS67_20370 PF01476 LysM domain JOS67_20370 PF08525 Opacity-associated protein A N-terminal motif JOS67_20370 PF01551 Peptidase family M23 JOS67_20375 PF08448 PAS fold JOS67_20375 PF08447 PAS fold JOS67_20375 PF00563 EAL domain JOS67_20375 PF00990 Diguanylate cyclase, GGDEF domain JOS67_20380 PF03466 LysR substrate binding domain JOS67_20380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_20385 PF07690 Major Facilitator Superfamily JOS67_20395 PF00462 Glutaredoxin JOS67_20400 PF00892 EamA-like transporter family JOS67_20415 PF01557 Fumarylacetoacetate (FAA) hydrolase family JOS67_20430 PF12833 Helix-turn-helix domain JOS67_20435 PF01810 LysE type translocator JOS67_20445 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JOS67_20445 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JOS67_20445 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JOS67_20445 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JOS67_20450 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JOS67_20450 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JOS67_20455 PF00115 Cytochrome C and Quinol oxidase polypeptide I JOS67_20460 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JOS67_20465 PF00510 Cytochrome c oxidase subunit III JOS67_20485 PF02628 Cytochrome oxidase assembly protein JOS67_20490 PF01040 UbiA prenyltransferase family JOS67_20495 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JOS67_20495 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JOS67_20505 PF05736 OprF membrane domain JOS67_20505 PF00691 OmpA family JOS67_20525 PF00313 'Cold-shock' DNA-binding domain JOS67_20530 PF03889 Alternative ribosome-rescue factor A JOS67_20535 PF00990 Diguanylate cyclase, GGDEF domain JOS67_20550 PF00005 ABC transporter JOS67_20550 PF02687 FtsX-like permease family JOS67_20550 PF12704 MacB-like periplasmic core domain JOS67_20555 PF00005 ABC transporter JOS67_20555 PF02687 FtsX-like permease family JOS67_20555 PF12704 MacB-like periplasmic core domain JOS67_20565 PF12729 Four helix bundle sensory module for signal transduction JOS67_20565 PF00672 HAMP domain JOS67_20565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_20570 PF00210 Ferritin-like domain JOS67_20580 PF07995 Glucose / Sorbosone dehydrogenase JOS67_20585 PF00465 Iron-containing alcohol dehydrogenase JOS67_20600 PF00892 EamA-like transporter family JOS67_20610 PF03466 LysR substrate binding domain JOS67_20610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_20620 PF13193 AMP-binding enzyme C-terminal domain JOS67_20620 PF00501 AMP-binding enzyme JOS67_20625 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JOS67_20630 PF01329 Pterin 4 alpha carbinolamine dehydratase JOS67_20650 PF12843 Putative quorum-sensing-regulated virulence factor JOS67_20665 PF04151 Bacterial pre-peptidase C-terminal domain JOS67_20665 PF00082 Subtilase family JOS67_20665 PF05922 Peptidase inhibitor I9 JOS67_20690 PF01925 Sulfite exporter TauE/SafE JOS67_20700 PF03466 LysR substrate binding domain JOS67_20700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_20705 PF07690 Major Facilitator Superfamily JOS67_20710 PF00271 Helicase conserved C-terminal domain JOS67_20710 PF00270 DEAD/DEAH box helicase JOS67_20715 PF09905 DNA-binding protein VF530 JOS67_20725 PF00291 Pyridoxal-phosphate dependent enzyme JOS67_20730 PF00773 RNB domain JOS67_20730 PF08206 Ribonuclease B OB domain JOS67_20730 PF08461 Ribonuclease R winged-helix domain JOS67_20730 PF17876 Cold shock domain JOS67_20730 PF00575 S1 RNA binding domain JOS67_20735 PF00313 'Cold-shock' DNA-binding domain JOS67_20745 PF01470 Pyroglutamyl peptidase JOS67_20755 PF07683 Cobalamin synthesis protein cobW C-terminal domain JOS67_20755 PF02492 CobW/HypB/UreG, nucleotide-binding domain JOS67_20760 PF00270 DEAD/DEAH box helicase JOS67_20760 PF00271 Helicase conserved C-terminal domain JOS67_20780 PF00563 EAL domain JOS67_20780 PF12792 CSS motif domain associated with EAL JOS67_20785 PF00005 ABC transporter JOS67_20790 PF08447 PAS fold JOS67_20790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_20810 PF13847 Methyltransferase domain JOS67_20810 PF17827 PrmC N-terminal domain JOS67_20855 PF01575 MaoC like domain JOS67_20860 PF12849 PBP superfamily domain JOS67_20870 PF12833 Helix-turn-helix domain JOS67_20875 PF00773 RNB domain JOS67_20875 PF00575 S1 RNA binding domain JOS67_20875 PF08206 Ribonuclease B OB domain JOS67_20880 PF03880 DbpA RNA binding domain JOS67_20880 PF00270 DEAD/DEAH box helicase JOS67_20880 PF00271 Helicase conserved C-terminal domain JOS67_20885 PF00563 EAL domain JOS67_20885 PF00990 Diguanylate cyclase, GGDEF domain JOS67_20885 PF03707 Bacterial signalling protein N terminal repeat JOS67_20890 PF00871 Acetokinase family JOS67_20895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_20895 PF08447 PAS fold JOS67_20895 PF13426 PAS domain JOS67_20900 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_20905 PF00571 CBS domain JOS67_20905 PF00005 ABC transporter JOS67_20910 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_20915 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JOS67_20920 PF00795 Carbon-nitrogen hydrolase JOS67_20930 PF12833 Helix-turn-helix domain JOS67_20930 PF01965 DJ-1/PfpI family JOS67_20935 PF00561 alpha/beta hydrolase fold JOS67_20940 PF04909 Amidohydrolase JOS67_20945 PF02913 FAD linked oxidases, C-terminal domain JOS67_20945 PF01565 FAD binding domain JOS67_20945 PF13183 4Fe-4S dicluster domain JOS67_20955 PF10063 Uncharacterized integral membrane protein (DUF2301) JOS67_20960 PF00682 HMGL-like JOS67_20965 PF00378 Enoyl-CoA hydratase/isomerase JOS67_20970 PF01039 Carboxyl transferase domain JOS67_20975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOS67_20975 PF02770 Acyl-CoA dehydrogenase, middle domain JOS67_20975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOS67_20980 PF09278 MerR, DNA binding JOS67_20980 PF00376 MerR family regulatory protein JOS67_20985 PF00108 Thiolase, N-terminal domain JOS67_20985 PF02803 Thiolase, C-terminal domain JOS67_20990 PF00171 Aldehyde dehydrogenase family JOS67_20995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOS67_20995 PF02770 Acyl-CoA dehydrogenase, middle domain JOS67_20995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOS67_21000 PF00378 Enoyl-CoA hydratase/isomerase JOS67_21005 PF00378 Enoyl-CoA hydratase/isomerase JOS67_21010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JOS67_21010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JOS67_21020 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JOS67_21020 PF06481 COX Aromatic Rich Motif JOS67_21025 PF00115 Cytochrome C and Quinol oxidase polypeptide I JOS67_21030 PF00510 Cytochrome c oxidase subunit III JOS67_21040 PF01040 UbiA prenyltransferase family JOS67_21050 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_21050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JOS67_21055 PF08031 Berberine and berberine like JOS67_21055 PF01565 FAD binding domain JOS67_21070 PF00171 Aldehyde dehydrogenase family JOS67_21080 PF02028 BCCT, betaine/carnitine/choline family transporter JOS67_21110 PF00005 ABC transporter JOS67_21115 PF00497 Bacterial extracellular solute-binding proteins, family 3 JOS67_21120 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_21125 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_21140 PF01389 OmpA-like transmembrane domain JOS67_21140 PF00691 OmpA family JOS67_21160 PF00766 Electron transfer flavoprotein FAD-binding domain JOS67_21160 PF01012 Electron transfer flavoprotein domain JOS67_21165 PF00364 Biotin-requiring enzyme JOS67_21165 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JOS67_21165 PF02817 e3 binding domain JOS67_21170 PF02779 Transketolase, pyrimidine binding domain JOS67_21170 PF02780 Transketolase, C-terminal domain JOS67_21175 PF00676 Dehydrogenase E1 component JOS67_21190 PF00012 Hsp70 protein JOS67_21195 PF04314 Copper chaperone PCu(A)C JOS67_21215 PF00072 Response regulator receiver domain JOS67_21215 PF00486 Transcriptional regulatory protein, C terminal JOS67_21235 PF01483 Proprotein convertase P-domain JOS67_21235 PF00082 Subtilase family JOS67_21245 PF00990 Diguanylate cyclase, GGDEF domain JOS67_21250 PF03222 Tryptophan/tyrosine permease family JOS67_21260 PF01610 Transposase JOS67_21260 PF13542 Helix-turn-helix domain of transposase family ISL3 JOS67_21260 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JOS67_21265 PF01568 Molydopterin dinucleotide binding domain JOS67_21265 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JOS67_21265 PF00384 Molybdopterin oxidoreductase JOS67_21270 PF14824 Sirohaem biosynthesis protein central JOS67_21270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JOS67_21270 PF10414 Sirohaem synthase dimerisation region JOS67_21275 PF02885 Glycosyl transferase family, helical bundle domain JOS67_21275 PF00591 Glycosyl transferase family, a/b domain JOS67_21280 PF01738 Dienelactone hydrolase family JOS67_21285 PF03861 ANTAR domain JOS67_21285 PF00072 Response regulator receiver domain JOS67_21290 PF00005 ABC transporter JOS67_21295 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_21300 PF00005 ABC transporter JOS67_21305 PF18267 Rubredoxin NAD+ reductase C-terminal domain JOS67_21305 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_21305 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JOS67_21305 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JOS67_21305 PF04324 BFD-like [2Fe-2S] binding domain JOS67_21305 PF13806 Rieske-like [2Fe-2S] domain JOS67_21320 PF08361 MAATS-type transcriptional repressor, C-terminal region JOS67_21320 PF00440 Bacterial regulatory proteins, tetR family JOS67_21335 PF00211 Adenylate and Guanylate cyclase catalytic domain JOS67_21335 PF00072 Response regulator receiver domain JOS67_21355 PF03793 PASTA domain JOS67_21355 PF00069 Protein kinase domain JOS67_21370 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JOS67_21375 PF13677 Membrane MotB of proton-channel complex MotA/MotB JOS67_21375 PF00691 OmpA family JOS67_21380 PF06744 Type VI secretion protein IcmF C-terminal JOS67_21380 PF14331 ImcF-related N-terminal domain JOS67_21380 PF06761 Intracellular multiplication and human macrophage-killing JOS67_21400 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 JOS67_21405 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JOS67_21410 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JOS67_21425 PF05947 Type VI secretion system, TssF JOS67_21435 PF17871 AAA lid domain JOS67_21435 PF10431 C-terminal, D2-small domain, of ClpB protein JOS67_21435 PF07724 AAA domain (Cdc48 subfamily) JOS67_21435 PF00004 ATPase family associated with various cellular activities (AAA) JOS67_21445 PF06715 Gp5 C-terminal repeat (3 copies) JOS67_21445 PF04717 Type VI secretion system, phage-baseplate injector JOS67_21460 PF00149 Calcineurin-like phosphoesterase JOS67_21460 PF12320 Type 5 capsule protein repressor C-terminal domain JOS67_21465 PF13476 AAA domain JOS67_21475 PF08212 Lipocalin-like domain JOS67_21485 PF03606 C4-dicarboxylate anaerobic carrier JOS67_21490 PF00034 Cytochrome c JOS67_21495 PF01212 Beta-eliminating lyase JOS67_21505 PF17868 AAA lid domain JOS67_21505 PF07728 AAA domain (dynein-related subfamily) JOS67_21505 PF12592 Protein of unknown function (DUF3763) JOS67_21510 PF05762 VWA domain containing CoxE-like protein JOS67_21525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_21525 PF03466 LysR substrate binding domain JOS67_21530 PF09330 D-lactate dehydrogenase, membrane binding JOS67_21530 PF01565 FAD binding domain JOS67_21545 PF01168 Alanine racemase, N-terminal domain JOS67_21545 PF00842 Alanine racemase, C-terminal domain JOS67_21550 PF00672 HAMP domain JOS67_21550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_21565 PF00128 Alpha amylase, catalytic domain JOS67_21565 PF09154 Domain of unknown function (DUF1939) JOS67_21615 PF00563 EAL domain JOS67_21615 PF13426 PAS domain JOS67_21615 PF00990 Diguanylate cyclase, GGDEF domain JOS67_21620 PF14760 Rnk N-terminus JOS67_21620 PF01272 Transcription elongation factor, GreA/GreB, C-term JOS67_21625 PF04324 BFD-like [2Fe-2S] binding domain JOS67_21625 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JOS67_21625 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JOS67_21625 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_21625 PF18267 Rubredoxin NAD+ reductase C-terminal domain JOS67_21630 PF13806 Rieske-like [2Fe-2S] domain JOS67_21635 PF01226 Formate/nitrite transporter JOS67_21640 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JOS67_21640 PF14824 Sirohaem biosynthesis protein central JOS67_21640 PF10414 Sirohaem synthase dimerisation region JOS67_21655 PF03605 Anaerobic c4-dicarboxylate membrane transporter JOS67_21665 PF00593 TonB dependent receptor JOS67_21665 PF07715 TonB-dependent Receptor Plug Domain JOS67_21680 PF11756 Nitrous oxide-stimulated promoter JOS67_21685 PF07690 Major Facilitator Superfamily JOS67_21690 PF00085 Thioredoxin JOS67_21695 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JOS67_21695 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JOS67_21715 PF01238 Phosphomannose isomerase type I JOS67_21720 PF07690 Major Facilitator Superfamily JOS67_21725 PF05231 MASE1 JOS67_21725 PF07730 Histidine kinase JOS67_21725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_21730 PF00072 Response regulator receiver domain JOS67_21730 PF00196 Bacterial regulatory proteins, luxR family JOS67_21735 PF07690 Major Facilitator Superfamily JOS67_21740 PF02634 FdhD/NarQ family JOS67_21745 PF03466 LysR substrate binding domain JOS67_21745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_21750 PF00384 Molybdopterin oxidoreductase JOS67_21760 PF02567 Phenazine biosynthesis-like protein JOS67_21765 PF01177 Asp/Glu/Hydantoin racemase JOS67_21770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JOS67_21770 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOS67_21785 PF04143 Sulphur transport JOS67_21800 PF01609 Transposase DDE domain JOS67_21800 PF13808 DDE_Tnp_1-associated JOS67_21810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_21820 PF13597 Anaerobic ribonucleoside-triphosphate reductase JOS67_21820 PF03477 ATP cone domain JOS67_21830 PF01554 MatE JOS67_21835 PF12833 Helix-turn-helix domain JOS67_21835 PF12852 Cupin JOS67_21840 PF00155 Aminotransferase class I and II JOS67_21845 PF18030 RimK PreATP-grasp domain JOS67_21845 PF08443 RimK-like ATP-grasp domain JOS67_21855 PF04076 Bacterial OB fold (BOF) protein JOS67_21860 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JOS67_21860 PF07685 CobB/CobQ-like glutamine amidotransferase domain JOS67_21870 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_21875 PF03459 TOBE domain JOS67_21875 PF00005 ABC transporter JOS67_21885 PF01590 GAF domain JOS67_21885 PF00360 Phytochrome region JOS67_21885 PF00563 EAL domain JOS67_21885 PF00990 Diguanylate cyclase, GGDEF domain JOS67_21895 PF00990 Diguanylate cyclase, GGDEF domain JOS67_21910 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JOS67_21910 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JOS67_21910 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JOS67_21915 PF02233 NAD(P) transhydrogenase beta subunit JOS67_21925 PF00486 Transcriptional regulatory protein, C terminal JOS67_21925 PF00072 Response regulator receiver domain JOS67_21940 PF03701 Uncharacterised protein family (UPF0181) JOS67_21945 PF00582 Universal stress protein family JOS67_21965 PF01253 Translation initiation factor SUI1 JOS67_21975 PF01820 D-ala D-ala ligase N-terminus JOS67_21975 PF07478 D-ala D-ala ligase C-terminus JOS67_21980 PF05036 Sporulation related domain JOS67_21985 PF13380 CoA binding domain JOS67_21985 PF00583 Acetyltransferase (GNAT) family JOS67_21985 PF13607 Succinyl-CoA ligase like flavodoxin domain JOS67_21990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_21990 PF03466 LysR substrate binding domain JOS67_21995 PF00593 TonB dependent receptor JOS67_21995 PF07715 TonB-dependent Receptor Plug Domain JOS67_21995 PF04886 PT repeat JOS67_22000 PF16363 GDP-mannose 4,6 dehydratase JOS67_22005 PF00563 EAL domain JOS67_22005 PF08448 PAS fold JOS67_22005 PF13426 PAS domain JOS67_22005 PF08447 PAS fold JOS67_22005 PF05231 MASE1 JOS67_22005 PF00990 Diguanylate cyclase, GGDEF domain JOS67_22010 PF03746 LamB/YcsF family JOS67_22015 PF02682 Carboxyltransferase domain, subdomain C and D JOS67_22020 PF02626 Carboxyltransferase domain, subdomain A and B JOS67_22035 PF00005 ABC transporter JOS67_22040 PF13472 GDSL-like Lipase/Acylhydrolase family JOS67_22045 PF07055 Enoyl reductase FAD binding domain JOS67_22045 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JOS67_22045 PF12241 Trans-2-enoyl-CoA reductase catalytic region JOS67_22050 PF00990 Diguanylate cyclase, GGDEF domain JOS67_22050 PF00498 FHA domain JOS67_22050 PF00563 EAL domain JOS67_22060 PF01556 DnaJ C terminal domain JOS67_22060 PF00226 DnaJ domain JOS67_22060 PF00684 DnaJ central domain JOS67_22085 PF12793 Sugar transport-related sRNA regulator N-term JOS67_22085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JOS67_22095 PF03061 Thioesterase superfamily JOS67_22110 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JOS67_22115 PF12262 Bacterial virulence factor lipase N-terminal JOS67_22135 PF03741 Integral membrane protein TerC family JOS67_22140 PF00149 Calcineurin-like phosphoesterase JOS67_22140 PF02872 5'-nucleotidase, C-terminal domain JOS67_22145 PF11398 Protein of unknown function (DUF2813) JOS67_22150 PF06496 Protein of unknown function (DUF1097) JOS67_22155 PF03466 LysR substrate binding domain JOS67_22155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_22160 PF01226 Formate/nitrite transporter JOS67_22165 PF04264 YceI-like domain JOS67_22170 PF01292 Prokaryotic cytochrome b561 JOS67_22185 PF12792 CSS motif domain associated with EAL JOS67_22185 PF00563 EAL domain JOS67_22190 PF00271 Helicase conserved C-terminal domain JOS67_22190 PF00270 DEAD/DEAH box helicase JOS67_22195 PF04336 Acyl carrier protein phosphodiesterase JOS67_22200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_22200 PF17200 Single Cache domain 2 JOS67_22200 PF00672 HAMP domain JOS67_22205 PF13419 Haloacid dehalogenase-like hydrolase JOS67_22220 PF00294 pfkB family carbohydrate kinase JOS67_22225 PF01268 Formate--tetrahydrofolate ligase JOS67_22230 PF00483 Nucleotidyl transferase JOS67_22235 PF06483 Chitinase C JOS67_22235 PF00704 Glycosyl hydrolases family 18 JOS67_22240 PF06719 AraC-type transcriptional regulator N-terminus JOS67_22240 PF12833 Helix-turn-helix domain JOS67_22245 PF00465 Iron-containing alcohol dehydrogenase JOS67_22255 PF00005 ABC transporter JOS67_22260 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_22265 PF00497 Bacterial extracellular solute-binding proteins, family 3 JOS67_22270 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_22275 PF00990 Diguanylate cyclase, GGDEF domain JOS67_22275 PF01590 GAF domain JOS67_22275 PF00563 EAL domain JOS67_22275 PF00989 PAS fold JOS67_22290 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JOS67_22290 PF00356 Bacterial regulatory proteins, lacI family JOS67_22295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOS67_22295 PF00381 PTS HPr component phosphorylation site JOS67_22300 PF00294 pfkB family carbohydrate kinase JOS67_22305 PF02378 Phosphotransferase system, EIIC JOS67_22305 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOS67_22315 PF00873 AcrB/AcrD/AcrF family JOS67_22325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_22335 PF01571 Aminomethyltransferase folate-binding domain JOS67_22335 PF08669 Glycine cleavage T-protein C-terminal barrel domain JOS67_22345 PF00464 Serine hydroxymethyltransferase JOS67_22350 PF01597 Glycine cleavage H-protein JOS67_22355 PF02347 Glycine cleavage system P-protein JOS67_22405 PF02151 UvrB/uvrC motif JOS67_22405 PF12344 Ultra-violet resistance protein B JOS67_22405 PF17757 UvrB interaction domain JOS67_22405 PF04851 Type III restriction enzyme, res subunit JOS67_22405 PF00271 Helicase conserved C-terminal domain JOS67_22435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JOS67_22440 PF02627 Carboxymuconolactone decarboxylase family JOS67_22445 PF12833 Helix-turn-helix domain JOS67_22460 PF11490 DNA polymerase III polC-type N-terminus II JOS67_22460 PF07733 Bacterial DNA polymerase III alpha NTPase domain JOS67_22460 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JOS67_22460 PF14579 Helix-hairpin-helix motif JOS67_22460 PF02811 PHP domain JOS67_22460 PF00929 Exonuclease JOS67_22465 PF00005 ABC transporter JOS67_22465 PF00664 ABC transporter transmembrane region JOS67_22485 PF02253 Phospholipase A1 JOS67_22495 PF00376 MerR family regulatory protein JOS67_22495 PF09278 MerR, DNA binding JOS67_22500 PF01327 Polypeptide deformylase JOS67_22530 PF00571 CBS domain JOS67_22530 PF03448 MgtE intracellular N domain JOS67_22530 PF01769 Divalent cation transporter JOS67_22550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JOS67_22555 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JOS67_22565 PF01757 Acyltransferase family JOS67_22575 PF09722 Protein of unknown function (DUF2384) JOS67_22580 PF00141 Peroxidase JOS67_22585 PF01645 Conserved region in glutamate synthase JOS67_22585 PF13187 4Fe-4S dicluster domain JOS67_22595 PF00171 Aldehyde dehydrogenase family JOS67_22610 PF00892 EamA-like transporter family JOS67_22615 PF00893 Small Multidrug Resistance protein JOS67_22645 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JOS67_22645 PF13542 Helix-turn-helix domain of transposase family ISL3 JOS67_22645 PF01610 Transposase JOS67_22660 PF08334 Type II secretion system (T2SS), protein G JOS67_22660 PF07963 Prokaryotic N-terminal methylation motif JOS67_22665 PF00072 Response regulator receiver domain JOS67_22665 PF01584 CheW-like domain JOS67_22670 PF00196 Bacterial regulatory proteins, luxR family JOS67_22670 PF00072 Response regulator receiver domain JOS67_22680 PF00990 Diguanylate cyclase, GGDEF domain JOS67_22680 PF08448 PAS fold JOS67_22690 PF03707 Bacterial signalling protein N terminal repeat JOS67_22690 PF00563 EAL domain JOS67_22690 PF13188 PAS domain JOS67_22690 PF00990 Diguanylate cyclase, GGDEF domain JOS67_22695 PF01926 50S ribosome-binding GTPase JOS67_22700 PF00155 Aminotransferase class I and II JOS67_22705 PF00072 Response regulator receiver domain JOS67_22705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_22715 PF00814 Glycoprotease family JOS67_22715 PF00583 Acetyltransferase (GNAT) family JOS67_22725 PF03606 C4-dicarboxylate anaerobic carrier JOS67_22730 PF04011 LemA family JOS67_22735 PF01435 Peptidase family M48 JOS67_22750 PF08774 VRR-NUC domain JOS67_22750 PF18081 Fanconi anemia-associated nuclease SAP domain JOS67_22760 PF04076 Bacterial OB fold (BOF) protein JOS67_22765 PF00781 Diacylglycerol kinase catalytic domain JOS67_22770 PF03466 LysR substrate binding domain JOS67_22770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_22775 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JOS67_22775 PF01872 RibD C-terminal domain JOS67_22790 PF00092 von Willebrand factor type A domain JOS67_22805 PF17863 AAA lid domain JOS67_22805 PF07726 ATPase family associated with various cellular activities (AAA) JOS67_22810 PF13186 Iron-sulfur cluster-binding domain JOS67_22810 PF04055 Radical SAM superfamily JOS67_22815 PF00884 Sulfatase JOS67_22815 PF16385 Domain of unknown function JOS67_22820 PF03466 LysR substrate binding domain JOS67_22820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_22825 PF00884 Sulfatase JOS67_22830 PF00486 Transcriptional regulatory protein, C terminal JOS67_22830 PF00072 Response regulator receiver domain JOS67_22845 PF00672 HAMP domain JOS67_22845 PF00512 His Kinase A (phospho-acceptor) domain JOS67_22845 PF01627 Hpt domain JOS67_22845 PF00072 Response regulator receiver domain JOS67_22845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_22850 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JOS67_22855 PF02142 MGS-like domain JOS67_22860 PF13361 UvrD-like helicase C-terminal domain JOS67_22860 PF12462 DNA helicase IV / RNA helicase N terminal JOS67_22860 PF00580 UvrD/REP helicase N-terminal domain JOS67_22865 PF12805 FUSC-like inner membrane protein yccS JOS67_22895 PF00593 TonB dependent receptor JOS67_22895 PF07715 TonB-dependent Receptor Plug Domain JOS67_22900 PF12833 Helix-turn-helix domain JOS67_22905 PF13411 MerR HTH family regulatory protein JOS67_22910 PF00005 ABC transporter JOS67_22915 PF01032 FecCD transport family JOS67_22920 PF01032 FecCD transport family JOS67_22925 PF01497 Periplasmic binding protein JOS67_22935 PF01048 Phosphorylase superfamily JOS67_22940 PF04973 Nicotinamide mononucleotide transporter JOS67_22945 PF00356 Bacterial regulatory proteins, lacI family JOS67_22950 PF00294 pfkB family carbohydrate kinase JOS67_22955 PF13407 Periplasmic binding protein domain JOS67_22960 PF02653 Branched-chain amino acid transport system / permease component JOS67_22965 PF00005 ABC transporter JOS67_22970 PF05025 RbsD / FucU transport protein family JOS67_22975 PF00563 EAL domain JOS67_22975 PF00990 Diguanylate cyclase, GGDEF domain JOS67_23010 PF04116 Fatty acid hydroxylase superfamily JOS67_23020 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JOS67_23020 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JOS67_23030 PF00072 Response regulator receiver domain JOS67_23030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_23030 PF00512 His Kinase A (phospho-acceptor) domain JOS67_23030 PF09308 LuxQ, periplasmic JOS67_23035 PF03150 Di-haem cytochrome c peroxidase JOS67_23035 PF00034 Cytochrome c JOS67_23040 PF00990 Diguanylate cyclase, GGDEF domain JOS67_23040 PF03707 Bacterial signalling protein N terminal repeat JOS67_23040 PF00563 EAL domain JOS67_23040 PF13188 PAS domain JOS67_23050 PF16200 C-terminal region of band_7 JOS67_23050 PF01145 SPFH domain / Band 7 family JOS67_23060 PF00881 Nitroreductase family JOS67_23065 PF00005 ABC transporter JOS67_23065 PF00571 CBS domain JOS67_23070 PF00528 Binding-protein-dependent transport system inner membrane component JOS67_23075 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JOS67_23080 PF00732 GMC oxidoreductase JOS67_23080 PF05199 GMC oxidoreductase JOS67_23085 PF00171 Aldehyde dehydrogenase family JOS67_23090 PF13977 BetI-type transcriptional repressor, C-terminal JOS67_23090 PF00440 Bacterial regulatory proteins, tetR family JOS67_23095 PF00072 Response regulator receiver domain JOS67_23095 PF00990 Diguanylate cyclase, GGDEF domain JOS67_23105 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JOS67_23105 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JOS67_23115 PF00378 Enoyl-CoA hydratase/isomerase JOS67_23120 PF02770 Acyl-CoA dehydrogenase, middle domain JOS67_23120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOS67_23120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOS67_23125 PF00171 Aldehyde dehydrogenase family JOS67_23130 PF02803 Thiolase, C-terminal domain JOS67_23130 PF00108 Thiolase, N-terminal domain JOS67_23135 PF00376 MerR family regulatory protein JOS67_23135 PF09278 MerR, DNA binding JOS67_23140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOS67_23140 PF02770 Acyl-CoA dehydrogenase, middle domain JOS67_23140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOS67_23145 PF01039 Carboxyl transferase domain JOS67_23150 PF00378 Enoyl-CoA hydratase/isomerase JOS67_23155 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JOS67_23155 PF18140 Propionyl-coenzyme A carboxylase BT domain JOS67_23155 PF00364 Biotin-requiring enzyme JOS67_23155 PF00289 Biotin carboxylase, N-terminal domain JOS67_23155 PF02785 Biotin carboxylase C-terminal domain JOS67_23160 PF00682 HMGL-like JOS67_23165 PF00672 HAMP domain JOS67_23165 PF00512 His Kinase A (phospho-acceptor) domain JOS67_23165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_23165 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JOS67_23165 PF00072 Response regulator receiver domain JOS67_23165 PF01627 Hpt domain JOS67_23180 PF14602 Hexapeptide repeat of succinyl-transferase JOS67_23180 PF12464 Maltose acetyltransferase JOS67_23185 PF00155 Aminotransferase class I and II JOS67_23185 PF00392 Bacterial regulatory proteins, gntR family JOS67_23190 PF01654 Cytochrome bd terminal oxidase subunit I JOS67_23195 PF02322 Cytochrome bd terminal oxidase subunit II JOS67_23205 PF02567 Phenazine biosynthesis-like protein JOS67_23210 PF13419 Haloacid dehalogenase-like hydrolase JOS67_23215 PF03466 LysR substrate binding domain JOS67_23215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_23220 PF03306 Alpha-acetolactate decarboxylase JOS67_23225 PF00205 Thiamine pyrophosphate enzyme, central domain JOS67_23225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JOS67_23225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JOS67_23235 PF02028 BCCT, betaine/carnitine/choline family transporter JOS67_23245 PF14535 AMP-binding enzyme C-terminal domain JOS67_23245 PF00501 AMP-binding enzyme JOS67_23250 PF00005 ABC transporter JOS67_23275 PF12399 Branched-chain amino acid ATP-binding cassette transporter JOS67_23275 PF00005 ABC transporter JOS67_23285 PF01012 Electron transfer flavoprotein domain JOS67_23290 PF00766 Electron transfer flavoprotein FAD-binding domain JOS67_23290 PF01012 Electron transfer flavoprotein domain JOS67_23295 PF13193 AMP-binding enzyme C-terminal domain JOS67_23295 PF00501 AMP-binding enzyme JOS67_23300 PF02378 Phosphotransferase system, EIIC JOS67_23300 PF00367 phosphotransferase system, EIIB JOS67_23305 PF11975 Family 4 glycosyl hydrolase C-terminal domain JOS67_23305 PF02056 Family 4 glycosyl hydrolase JOS67_23310 PF00392 Bacterial regulatory proteins, gntR family JOS67_23310 PF07702 UTRA domain JOS67_23315 PF03334 Na+/H+ antiporter subunit JOS67_23320 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JOS67_23325 PF01899 Na+/H+ ion antiporter subunit JOS67_23330 PF00361 Proton-conducting membrane transporter JOS67_23335 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JOS67_23340 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JOS67_23340 PF00361 Proton-conducting membrane transporter JOS67_23340 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JOS67_23340 PF13244 Domain of unknown function (DUF4040) JOS67_23350 PF00582 Universal stress protein family JOS67_23355 PF00106 short chain dehydrogenase JOS67_23360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_23360 PF03466 LysR substrate binding domain JOS67_23370 PF07690 Major Facilitator Superfamily JOS67_23425 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JOS67_23455 PF01037 Lrp/AsnC ligand binding domain JOS67_23465 PF05947 Type VI secretion system, TssF JOS67_23475 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JOS67_23490 PF00069 Protein kinase domain JOS67_23515 PF04717 Type VI secretion system, phage-baseplate injector JOS67_23520 PF05638 Type VI secretion system effector, Hcp JOS67_23525 PF13737 Transposase DDE domain JOS67_23545 PF00072 Response regulator receiver domain JOS67_23545 PF02954 Bacterial regulatory protein, Fis family JOS67_23545 PF00158 Sigma-54 interaction domain JOS67_23555 PF13737 Transposase DDE domain JOS67_23580 PF01476 LysM domain JOS67_23580 PF01551 Peptidase family M23 JOS67_23580 PF08525 Opacity-associated protein A N-terminal motif JOS67_23585 PF03466 LysR substrate binding domain JOS67_23585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_23590 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JOS67_23590 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JOS67_23590 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JOS67_23595 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JOS67_23605 PF00478 IMP dehydrogenase / GMP reductase domain JOS67_23610 PF03853 YjeF-related protein N-terminus JOS67_23610 PF01256 Carbohydrate kinase JOS67_23620 PF00072 Response regulator receiver domain JOS67_23625 PF00248 Aldo/keto reductase family JOS67_23640 PF00654 Voltage gated chloride channel JOS67_23650 PF01566 Natural resistance-associated macrophage protein JOS67_23655 PF01227 GTP cyclohydrolase I JOS67_23660 PF00994 Probable molybdopterin binding domain JOS67_23660 PF03454 MoeA C-terminal region (domain IV) JOS67_23660 PF03453 MoeA N-terminal region (domain I and II) JOS67_23665 PF00899 ThiF family JOS67_23685 PF00581 Rhodanese-like domain JOS67_23690 PF00563 EAL domain JOS67_23690 PF00990 Diguanylate cyclase, GGDEF domain JOS67_23690 PF03707 Bacterial signalling protein N terminal repeat JOS67_23695 PF00704 Glycosyl hydrolases family 18 JOS67_23695 PF08329 Chitinase A, N-terminal domain JOS67_23705 PF00923 Transaldolase/Fructose-6-phosphate aldolase JOS67_23710 PF00456 Transketolase, thiamine diphosphate binding domain JOS67_23710 PF02779 Transketolase, pyrimidine binding domain JOS67_23710 PF02780 Transketolase, C-terminal domain JOS67_23715 PF08447 PAS fold JOS67_23715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_23720 PF07690 Major Facilitator Superfamily JOS67_23725 PF00793 DAHP synthetase I family JOS67_23730 PF00691 OmpA family JOS67_23730 PF01389 OmpA-like transmembrane domain JOS67_23735 PF13419 Haloacid dehalogenase-like hydrolase JOS67_23740 PF00472 RF-1 domain JOS67_23745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOS67_23745 PF12729 Four helix bundle sensory module for signal transduction JOS67_23745 PF00672 HAMP domain JOS67_23750 PF00873 AcrB/AcrD/AcrF family JOS67_23755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_23760 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JOS67_23765 PF07687 Peptidase dimerisation domain JOS67_23765 PF01546 Peptidase family M20/M25/M40 JOS67_23780 PF00072 Response regulator receiver domain JOS67_23780 PF00196 Bacterial regulatory proteins, luxR family JOS67_23785 PF07730 Histidine kinase JOS67_23785 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JOS67_23785 PF00672 HAMP domain JOS67_23785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_23790 PF12838 4Fe-4S dicluster domain JOS67_23790 PF13187 4Fe-4S dicluster domain JOS67_23800 PF01568 Molydopterin dinucleotide binding domain JOS67_23800 PF00384 Molybdopterin oxidoreductase JOS67_23800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JOS67_23805 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) JOS67_23810 PF03264 NapC/NirT cytochrome c family, N-terminal region JOS67_23820 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JOS67_23830 PF00108 Thiolase, N-terminal domain JOS67_23830 PF02803 Thiolase, C-terminal domain JOS67_23835 PF00106 short chain dehydrogenase JOS67_23840 PF01810 LysE type translocator JOS67_23850 PF02355 Protein export membrane protein JOS67_23850 PF07549 SecD/SecF GG Motif JOS67_23855 PF13721 SecD export protein N-terminal TM region JOS67_23855 PF07549 SecD/SecF GG Motif JOS67_23855 PF02355 Protein export membrane protein JOS67_23880 PF01037 Lrp/AsnC ligand binding domain JOS67_23900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_23900 PF00529 HlyD membrane-fusion protein of T1SS JOS67_23910 PF00072 Response regulator receiver domain JOS67_23910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_23910 PF00512 His Kinase A (phospho-acceptor) domain JOS67_23910 PF09308 LuxQ, periplasmic JOS67_23915 PF13407 Periplasmic binding protein domain JOS67_23920 PF01541 GIY-YIG catalytic domain JOS67_23925 PF04337 Protein of unknown function, DUF480 JOS67_23935 PF04363 Protein of unknown function (DUF496) JOS67_23940 PF01554 MatE JOS67_23945 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JOS67_23945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_23945 PF00072 Response regulator receiver domain JOS67_23945 PF00672 HAMP domain JOS67_23945 PF00512 His Kinase A (phospho-acceptor) domain JOS67_23945 PF01627 Hpt domain JOS67_23950 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JOS67_23950 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JOS67_23965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOS67_23965 PF03466 LysR substrate binding domain JOS67_23975 PF13520 Amino acid permease JOS67_23980 PF00392 Bacterial regulatory proteins, gntR family JOS67_23980 PF00155 Aminotransferase class I and II JOS67_23990 PF16527 Two-component sensor protein CpxA, periplasmic domain JOS67_23990 PF00672 HAMP domain JOS67_23990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOS67_23990 PF00512 His Kinase A (phospho-acceptor) domain JOS67_23995 PF00072 Response regulator receiver domain JOS67_23995 PF00486 Transcriptional regulatory protein, C terminal JOS67_24020 PF00529 HlyD membrane-fusion protein of T1SS JOS67_24020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOS67_24025 PF03109 ABC1 family JOS67_24030 PF00571 CBS domain JOS67_24030 PF03448 MgtE intracellular N domain JOS67_24030 PF01769 Divalent cation transporter