locus-tag class description KC397_00005 PF00308 Bacterial dnaA protein KC397_00005 PF08299 Bacterial dnaA protein helix-turn-helix KC397_00005 PF11638 DnaA N-terminal domain KC397_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KC397_00010 PF02767 DNA polymerase III beta subunit, central domain KC397_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KC397_00015 PF02463 RecF/RecN/SMC N terminal domain KC397_00020 PF01751 Toprim domain KC397_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_00020 PF18053 DNA gyrase B subunit insert domain KC397_00020 PF00986 DNA gyrase B subunit, carboxyl terminus KC397_00020 PF00204 DNA gyrase B KC397_00025 PF00011 Hsp20/alpha crystallin family KC397_00030 PF00155 Aminotransferase class I and II KC397_00035 PF05746 DALR anticodon binding domain KC397_00035 PF02092 Glycyl-tRNA synthetase beta subunit KC397_00040 PF02091 Glycyl-tRNA synthetase alpha subunit KC397_00045 PF01169 Uncharacterized protein family UPF0016 KC397_00055 PF01206 Sulfurtransferase TusA KC397_00065 PF03466 LysR substrate binding domain KC397_00065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_00070 PF08240 Alcohol dehydrogenase GroES-like domain KC397_00070 PF00107 Zinc-binding dehydrogenase KC397_00075 PF00291 Pyridoxal-phosphate dependent enzyme KC397_00075 PF00585 C-terminal regulatory domain of Threonine dehydratase KC397_00080 PF00920 Dehydratase family KC397_00085 PF01063 Amino-transferase class IV KC397_00095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KC397_00095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KC397_00095 PF00205 Thiamine pyrophosphate enzyme, central domain KC397_00100 PF13335 Magnesium chelatase, subunit ChlI C-terminal KC397_00100 PF01078 Magnesium chelatase, subunit ChlI KC397_00105 PF01553 Acyltransferase KC397_00110 PF01323 DSBA-like thioredoxin domain KC397_00115 PF01636 Phosphotransferase enzyme family KC397_00120 PF13746 4Fe-4S dicluster domain KC397_00120 PF12801 4Fe-4S binding domain KC397_00120 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase KC397_00125 PF06288 Protein of unknown function (DUF1040) KC397_00130 PF07070 SpoOM protein KC397_00135 PF03006 Haemolysin-III related KC397_00145 PF02386 Cation transport protein KC397_00150 PF02254 TrkA-N domain KC397_00150 PF02080 TrkA-C domain KC397_00155 PF01189 16S rRNA methyltransferase RsmB/F KC397_00155 PF01029 NusB family KC397_00160 PF02911 Formyl transferase, C-terminal domain KC397_00160 PF00551 Formyl transferase KC397_00165 PF01327 Polypeptide deformylase KC397_00170 PF01476 LysM domain KC397_00175 PF02481 DNA recombination-mediator protein A KC397_00175 PF17782 DprA winged helix domain KC397_00180 PF04361 Protein of unknown function (DUF494) KC397_00185 PF01396 Topoisomerase DNA binding C4 zinc finger KC397_00190 PF02222 ATP-grasp domain KC397_00190 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KC397_00195 PF00731 AIR carboxylase KC397_00200 PF01300 Telomere recombination KC397_00205 PF01218 Coproporphyrinogen III oxidase KC397_00210 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KC397_00210 PF01488 Shikimate / quinate 5-dehydrogenase KC397_00210 PF08501 Shikimate dehydrogenase substrate binding domain KC397_00215 PF07369 Protein of unknown function (DUF1488) KC397_00220 PF00132 Bacterial transferase hexapeptide (six repeats) KC397_00260 PF03466 LysR substrate binding domain KC397_00260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_00265 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KC397_00265 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KC397_00270 PF04380 Membrane fusogenic activity KC397_00275 PF00873 AcrB/AcrD/AcrF family KC397_00280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_00285 PF16295 Tetracyclin repressor-like, C-terminal domain KC397_00285 PF00440 Bacterial regulatory proteins, tetR family KC397_00290 PF13361 UvrD-like helicase C-terminal domain KC397_00290 PF00580 UvrD/REP helicase N-terminal domain KC397_00295 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KC397_00325 PF00005 ABC transporter KC397_00325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KC397_00330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KC397_00335 PF00528 Binding-protein-dependent transport system inner membrane component KC397_00340 PF00528 Binding-protein-dependent transport system inner membrane component KC397_00340 PF12911 N-terminal TM domain of oligopeptide transport permease C KC397_00350 PF00873 AcrB/AcrD/AcrF family KC397_00355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_00355 PF00529 HlyD membrane-fusion protein of T1SS KC397_00365 PF01047 MarR family KC397_00370 PF07992 Pyridine nucleotide-disulphide oxidoreductase KC397_00370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KC397_00375 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KC397_00380 PF01432 Peptidase family M3 KC397_00400 PF05114 Protein of unknown function (DUF692) KC397_00410 PF00580 UvrD/REP helicase N-terminal domain KC397_00410 PF13361 UvrD-like helicase C-terminal domain KC397_00420 PF01810 LysE type translocator KC397_00430 PF00892 EamA-like transporter family KC397_00435 PF09382 RQC domain KC397_00435 PF16124 RecQ zinc-binding KC397_00435 PF00570 HRDC domain KC397_00435 PF00271 Helicase conserved C-terminal domain KC397_00435 PF00270 DEAD/DEAH box helicase KC397_00450 PF00005 ABC transporter KC397_00450 PF00664 ABC transporter transmembrane region KC397_00455 PF00005 ABC transporter KC397_00460 PF01497 Periplasmic binding protein KC397_00465 PF01032 FecCD transport family KC397_00470 PF00593 TonB dependent receptor KC397_00470 PF07715 TonB-dependent Receptor Plug Domain KC397_00475 PF03350 Uncharacterized protein family, UPF0114 KC397_00480 PF08340 Domain of unknown function (DUF1732) KC397_00480 PF03755 YicC-like family, N-terminal region KC397_00485 PF03725 3' exoribonuclease family, domain 2 KC397_00485 PF01138 3' exoribonuclease family, domain 1 KC397_00490 PF00156 Phosphoribosyl transferase domain KC397_00495 PF03279 Bacterial lipid A biosynthesis acyltransferase KC397_00500 PF00440 Bacterial regulatory proteins, tetR family KC397_00505 PF02441 Flavoprotein KC397_00505 PF04127 DNA / pantothenate metabolism flavoprotein KC397_00510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_00510 PF17200 Single Cache domain 2 KC397_00510 PF00672 HAMP domain KC397_00515 PF04002 RadC-like JAB domain KC397_00520 PF00830 Ribosomal L28 family KC397_00525 PF00471 Ribosomal protein L33 KC397_00535 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KC397_00535 PF06827 Zinc finger found in FPG and IleRS KC397_00535 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KC397_00540 PF01370 NAD dependent epimerase/dehydratase family KC397_00550 PF01467 Cytidylyltransferase-like KC397_00555 PF00534 Glycosyl transferases group 1 KC397_00555 PF13439 Glycosyltransferase Family 4 KC397_00560 PF00534 Glycosyl transferases group 1 KC397_00560 PF13439 Glycosyltransferase Family 4 KC397_00565 PF00535 Glycosyl transferase family 2 KC397_00570 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KC397_00580 PF00534 Glycosyl transferases group 1 KC397_00585 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KC397_00590 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KC397_00595 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KC397_00605 PF03279 Bacterial lipid A biosynthesis acyltransferase KC397_00610 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KC397_00610 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KC397_00610 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KC397_00615 PF01370 NAD dependent epimerase/dehydratase family KC397_00620 PF06082 Exopolysaccharide biosynthesis protein YbjH KC397_00630 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF KC397_00640 PF02563 Polysaccharide biosynthesis/export protein KC397_00640 PF10531 SLBB domain KC397_00640 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KC397_00645 PF01451 Low molecular weight phosphotyrosine protein phosphatase KC397_00650 PF13614 AAA domain KC397_00650 PF13807 G-rich domain on putative tyrosine kinase KC397_00650 PF02706 Chain length determinant protein KC397_00695 PF01531 Glycosyl transferase family 11 KC397_00710 PF13439 Glycosyltransferase Family 4 KC397_00710 PF00534 Glycosyl transferases group 1 KC397_00715 PF16363 GDP-mannose 4,6 dehydratase KC397_00720 PF01370 NAD dependent epimerase/dehydratase family KC397_00725 PF00293 NUDIX domain KC397_00730 PF00483 Nucleotidyl transferase KC397_00730 PF01050 Mannose-6-phosphate isomerase KC397_00735 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KC397_00735 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KC397_00735 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KC397_00735 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KC397_00740 PF00535 Glycosyl transferase family 2 KC397_00745 PF01370 NAD dependent epimerase/dehydratase family KC397_00750 PF02397 Bacterial sugar transferase KC397_00755 PF02719 Polysaccharide biosynthesis protein KC397_00760 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KC397_00760 PF00753 Metallo-beta-lactamase superfamily KC397_00760 PF10996 Beta-Casp domain KC397_00765 PF03167 Uracil DNA glycosylase superfamily KC397_00770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KC397_00775 PF04222 Protein of unknown function (DUF416) KC397_00780 PF00924 Mechanosensitive ion channel KC397_00785 PF00571 CBS domain KC397_00785 PF01595 Cyclin M transmembrane N-terminal domain KC397_00790 PF00216 Bacterial DNA-binding protein KC397_00800 PF02844 Phosphoribosylglycinamide synthetase, N domain KC397_00800 PF02843 Phosphoribosylglycinamide synthetase, C domain KC397_00800 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KC397_00805 PF01808 AICARFT/IMPCHase bienzyme KC397_00805 PF02142 MGS-like domain KC397_00815 PF13411 MerR HTH family regulatory protein KC397_00820 PF00480 ROK family KC397_00825 PF01238 Phosphomannose isomerase type I KC397_00830 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KC397_00830 PF02378 Phosphotransferase system, EIIC KC397_00830 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KC397_00835 PF12833 Helix-turn-helix domain KC397_00845 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KC397_00845 PF02378 Phosphotransferase system, EIIC KC397_00850 PF17200 Single Cache domain 2 KC397_00850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_00850 PF00672 HAMP domain KC397_00855 PF02954 Bacterial regulatory protein, Fis family KC397_00860 PF01207 Dihydrouridine synthase (Dus) KC397_00870 PF02785 Biotin carboxylase C-terminal domain KC397_00870 PF00289 Biotin carboxylase, N-terminal domain KC397_00870 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KC397_00875 PF00364 Biotin-requiring enzyme KC397_00880 PF01220 Dehydroquinase class II KC397_00885 PF16177 Acetyl-coenzyme A synthetase N-terminus KC397_00885 PF00501 AMP-binding enzyme KC397_00885 PF13193 AMP-binding enzyme C-terminal domain KC397_00900 PF12832 MFS_1 like family KC397_00905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_00905 PF00512 His Kinase A (phospho-acceptor) domain KC397_00905 PF00072 Response regulator receiver domain KC397_00905 PF00497 Bacterial extracellular solute-binding proteins, family 3 KC397_00910 PF02541 Ppx/GppA phosphatase family KC397_00915 PF00270 DEAD/DEAH box helicase KC397_00915 PF00271 Helicase conserved C-terminal domain KC397_00920 PF00085 Thioredoxin KC397_00925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KC397_00925 PF07498 Rho termination factor, N-terminal domain KC397_00925 PF07497 Rho termination factor, RNA-binding domain KC397_00935 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase KC397_00940 PF00175 Oxidoreductase NAD-binding domain KC397_00940 PF00970 Oxidoreductase FAD-binding domain KC397_00940 PF00111 2Fe-2S iron-sulfur cluster binding domain KC397_00945 PF00175 Oxidoreductase NAD-binding domain KC397_01010 PF13091 PLD-like domain KC397_01020 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KC397_01020 PF01565 FAD binding domain KC397_01025 PF02237 Biotin protein ligase C terminal domain KC397_01025 PF08279 HTH domain KC397_01025 PF03099 Biotin/lipoate A/B protein ligase family KC397_01030 PF00485 Phosphoribulokinase / Uridine kinase family KC397_01055 PF03144 Elongation factor Tu domain 2 KC397_01055 PF03143 Elongation factor Tu C-terminal domain KC397_01055 PF00009 Elongation factor Tu GTP binding domain KC397_01060 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KC397_01065 PF00467 KOW motif KC397_01065 PF02357 Transcription termination factor nusG KC397_01070 PF00298 Ribosomal protein L11, RNA binding domain KC397_01070 PF03946 Ribosomal protein L11, N-terminal domain KC397_01075 PF00687 Ribosomal protein L1p/L10e family KC397_01080 PF00466 Ribosomal protein L10 KC397_01085 PF16320 Ribosomal protein L7/L12 dimerisation domain KC397_01085 PF00542 Ribosomal protein L7/L12 C-terminal domain KC397_01090 PF04565 RNA polymerase Rpb2, domain 3 KC397_01090 PF10385 RNA polymerase beta subunit external 1 domain KC397_01090 PF00562 RNA polymerase Rpb2, domain 6 KC397_01090 PF04560 RNA polymerase Rpb2, domain 7 KC397_01090 PF04563 RNA polymerase beta subunit KC397_01090 PF04561 RNA polymerase Rpb2, domain 2 KC397_01095 PF04997 RNA polymerase Rpb1, domain 1 KC397_01095 PF00623 RNA polymerase Rpb1, domain 2 KC397_01095 PF04983 RNA polymerase Rpb1, domain 3 KC397_01095 PF05000 RNA polymerase Rpb1, domain 4 KC397_01095 PF04998 RNA polymerase Rpb1, domain 5 KC397_01100 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ KC397_01105 PF09297 NADH pyrophosphatase zinc ribbon domain KC397_01105 PF00293 NUDIX domain KC397_01110 PF01208 Uroporphyrinogen decarboxylase (URO-D) KC397_01115 PF08360 QacR-like protein, C-terminal region KC397_01115 PF00440 Bacterial regulatory proteins, tetR family KC397_01125 PF01551 Peptidase family M23 KC397_01130 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KC397_01130 PF01676 Metalloenzyme superfamily KC397_01140 PF00672 HAMP domain KC397_01140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_01145 PF03600 Citrate transporter KC397_01145 PF02080 TrkA-C domain KC397_01150 PF02666 Phosphatidylserine decarboxylase KC397_01155 PF03193 RsgA GTPase KC397_01160 PF00929 Exonuclease KC397_01210 PF08331 Domain of unknown function (DUF1730) KC397_01215 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KC397_01220 PF01520 N-acetylmuramoyl-L-alanine amidase KC397_01225 PF01119 DNA mismatch repair protein, C-terminal domain KC397_01225 PF08676 MutL C terminal dimerisation domain KC397_01235 PF17209 Hfq protein KC397_01240 PF16360 GTP-binding GTPase Middle Region KC397_01240 PF13167 GTP-binding GTPase N-terminal KC397_01240 PF01926 50S ribosome-binding GTPase KC397_01245 PF01145 SPFH domain / Band 7 family KC397_01245 PF12221 Bacterial membrane protein N terminal KC397_01250 PF01145 SPFH domain / Band 7 family KC397_01255 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) KC397_01260 PF04102 SlyX KC397_01270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KC397_01270 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KC397_01275 PF13309 HTH domain KC397_01275 PF08348 YheO-like PAS domain KC397_01280 PF02635 DsrE/DsrF-like family KC397_01285 PF02635 DsrE/DsrF-like family KC397_01290 PF04077 DsrH like protein KC397_01295 PF00164 Ribosomal protein S12/S23 KC397_01300 PF00177 Ribosomal protein S7p/S5e KC397_01305 PF00679 Elongation factor G C-terminus KC397_01305 PF14492 Elongation Factor G, domain II KC397_01305 PF03764 Elongation factor G, domain IV KC397_01305 PF03144 Elongation factor Tu domain 2 KC397_01305 PF00009 Elongation factor Tu GTP binding domain KC397_01310 PF00009 Elongation factor Tu GTP binding domain KC397_01310 PF03144 Elongation factor Tu domain 2 KC397_01310 PF03143 Elongation factor Tu C-terminal domain KC397_01315 PF04324 BFD-like [2Fe-2S] binding domain KC397_01320 PF00210 Ferritin-like domain KC397_01325 PF01250 Ribosomal protein S6 KC397_01330 PF00436 Single-strand binding protein family KC397_01335 PF01084 Ribosomal protein S18 KC397_01340 PF01281 Ribosomal protein L9, N-terminal domain KC397_01340 PF03948 Ribosomal protein L9, C-terminal domain KC397_01350 PF00772 DnaB-like helicase N terminal domain KC397_01350 PF03796 DnaB-like helicase C terminal domain KC397_01355 PF00842 Alanine racemase, C-terminal domain KC397_01355 PF01168 Alanine racemase, N-terminal domain KC397_01360 PF01894 Uncharacterised protein family UPF0047 KC397_01365 PF00342 Phosphoglucose isomerase KC397_01375 PF01475 Ferric uptake regulator family KC397_01380 PF01207 Dihydrouridine synthase (Dus) KC397_01400 PF00258 Flavodoxin KC397_01400 PF00175 Oxidoreductase NAD-binding domain KC397_01400 PF00667 FAD binding domain KC397_01405 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KC397_01405 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KC397_01410 PF01507 Phosphoadenosine phosphosulfate reductase family KC397_01470 PF00999 Sodium/hydrogen exchanger family KC397_01475 PF02310 B12 binding domain KC397_01475 PF02607 B12 binding domain KC397_01475 PF02965 Vitamin B12 dependent methionine synthase, activation domain KC397_01475 PF00809 Pterin binding enzyme KC397_01475 PF02574 Homocysteine S-methyltransferase KC397_01480 PF01842 ACT domain KC397_01480 PF00696 Amino acid kinase family KC397_01485 PF00266 Aminotransferase class-V KC397_01495 PF17760 UvrA interaction domain KC397_01495 PF17755 UvrA DNA-binding domain KC397_01495 PF00005 ABC transporter KC397_01500 PF00483 Nucleotidyl transferase KC397_01505 PF00196 Bacterial regulatory proteins, luxR family KC397_01510 PF00436 Single-strand binding protein family KC397_01515 PF17157 Gammaproteobacterial periplasmic sensor domain KC397_01515 PF00990 Diguanylate cyclase, GGDEF domain KC397_01515 PF00563 EAL domain KC397_01535 PF00263 Bacterial type II and III secretion system protein KC397_01535 PF03958 Bacterial type II/III secretion system short domain KC397_01540 PF13401 AAA domain KC397_01540 PF01471 Putative peptidoglycan binding domain KC397_01550 PF00437 Type II/IV secretion system protein KC397_01550 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KC397_01555 PF00482 Type II secretion system (T2SS), protein F KC397_01565 PF07963 Prokaryotic N-terminal methylation motif KC397_01570 PF07963 Prokaryotic N-terminal methylation motif KC397_01605 PF04085 rod shape-determining protein MreC KC397_01610 PF04093 rod shape-determining protein MreD KC397_01615 PF02545 Maf-like protein KC397_01620 PF00575 S1 RNA binding domain KC397_01620 PF10150 Ribonuclease E/G family KC397_01625 PF13502 AsmA-like C-terminal region KC397_01625 PF13116 Protein of unknown function KC397_01630 PF00795 Carbon-nitrogen hydrolase KC397_01635 PF01523 Putative modulator of DNA gyrase KC397_01640 PF06877 Regulator of ribonuclease activity B KC397_01655 PF00582 Universal stress protein family KC397_01670 PF02863 Arginine repressor, C-terminal domain KC397_01670 PF01316 Arginine repressor, DNA binding domain KC397_01675 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KC397_01675 PF00056 lactate/malate dehydrogenase, NAD binding domain KC397_01680 PF13520 Amino acid permease KC397_01685 PF00348 Polyprenyl synthetase KC397_01690 PF00829 Ribosomal prokaryotic L21 protein KC397_01695 PF01016 Ribosomal L27 protein KC397_01700 PF01018 GTP1/OBG KC397_01700 PF01926 50S ribosome-binding GTPase KC397_01705 PF06738 Putative threonine/serine exporter KC397_01710 PF12821 Threonine/Serine exporter, ThrE KC397_01715 PF00186 Dihydrofolate reductase KC397_01720 PF00149 Calcineurin-like phosphoesterase KC397_01725 PF04379 ApaG domain KC397_01730 PF00398 Ribosomal RNA adenine dimethylase KC397_01735 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KC397_01740 PF09312 SurA N-terminal domain KC397_01745 PF03968 OstA-like protein KC397_01745 PF04453 LPS transport system D KC397_01750 PF05099 Tellurite resistance protein TerB KC397_01750 PF00226 DnaJ domain KC397_01780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_01780 PF17200 Single Cache domain 2 KC397_01780 PF00672 HAMP domain KC397_01805 PF01464 Transglycosylase SLT domain KC397_01805 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain KC397_01810 PF04362 Bacterial Fe(2+) trafficking KC397_01815 PF10576 Iron-sulfur binding domain of endonuclease III KC397_01815 PF00633 Helix-hairpin-helix motif KC397_01815 PF00730 HhH-GPD superfamily base excision DNA repair protein KC397_01815 PF14815 NUDIX domain KC397_01820 PF02390 Putative methyltransferase KC397_01825 PF04960 Glutaminase KC397_01830 PF00730 HhH-GPD superfamily base excision DNA repair protein KC397_01835 PF06969 HemN C-terminal domain KC397_01835 PF04055 Radical SAM superfamily KC397_01840 PF01725 Ham1 family KC397_01850 PF02594 Uncharacterised ACR, YggU family COG1872 KC397_01855 PF02325 YGGT family KC397_01860 PF03807 NADP oxidoreductase coenzyme F420-dependent KC397_01860 PF14748 Pyrroline-5-carboxylate reductase dimerisation KC397_01865 PF01168 Alanine racemase, N-terminal domain KC397_01870 PF00437 Type II/IV secretion system protein KC397_01875 PF00437 Type II/IV secretion system protein KC397_01880 PF03652 Holliday junction resolvase KC397_01885 PF02622 Uncharacterized ACR, COG1678 KC397_01890 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KC397_01890 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KC397_01895 PF04452 RNA methyltransferase KC397_01900 PF04231 Endonuclease I KC397_01905 PF10263 SprT-like family KC397_01905 PF17283 SprT-like zinc ribbon domain KC397_01915 PF00438 S-adenosylmethionine synthetase, N-terminal domain KC397_01915 PF02772 S-adenosylmethionine synthetase, central domain KC397_01915 PF02773 S-adenosylmethionine synthetase, C-terminal domain KC397_01920 PF00456 Transketolase, thiamine diphosphate binding domain KC397_01920 PF02780 Transketolase, C-terminal domain KC397_01920 PF02779 Transketolase, pyrimidine binding domain KC397_01925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_01925 PF03466 LysR substrate binding domain KC397_01930 PF00593 TonB dependent receptor KC397_01930 PF07715 TonB-dependent Receptor Plug Domain KC397_01935 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KC397_01935 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KC397_01940 PF00162 Phosphoglycerate kinase KC397_01945 PF01116 Fructose-bisphosphate aldolase class-II KC397_01950 PF00924 Mechanosensitive ion channel KC397_01950 PF05552 Conserved TM helix KC397_01960 PF01810 LysE type translocator KC397_01965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_01965 PF03466 LysR substrate binding domain KC397_01975 PF17158 Membrane-associated sensor, integral membrane domain KC397_01975 PF00990 Diguanylate cyclase, GGDEF domain KC397_01980 PF00224 Pyruvate kinase, barrel domain KC397_01980 PF02887 Pyruvate kinase, alpha/beta domain KC397_01985 PF00455 DeoR C terminal sensor domain KC397_01985 PF08220 DeoR-like helix-turn-helix domain KC397_01990 PF01380 SIS domain KC397_02025 PF06527 TniQ KC397_02025 PF15978 Tn7-like transposition protein D KC397_02060 PF09397 Ftsk gamma domain KC397_02060 PF01580 FtsK/SpoIIIE family KC397_02060 PF17854 FtsK alpha domain KC397_02065 PF03480 Bacterial extracellular solute-binding protein, family 7 KC397_02080 PF00571 CBS domain KC397_02080 PF03448 MgtE intracellular N domain KC397_02080 PF01769 Divalent cation transporter KC397_02100 PF08220 DeoR-like helix-turn-helix domain KC397_02100 PF13280 WYL domain KC397_02160 PF00589 Phage integrase family KC397_02160 PF02899 Phage integrase, N-terminal SAM-like domain KC397_02175 PF00589 Phage integrase family KC397_02195 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KC397_02205 PF00580 UvrD/REP helicase N-terminal domain KC397_02205 PF13361 UvrD-like helicase C-terminal domain KC397_02215 PF01381 Helix-turn-helix KC397_02225 PF07804 HipA-like C-terminal domain KC397_02225 PF13657 HipA N-terminal domain KC397_02250 PF00140 Sigma-70 factor, region 1.2 KC397_02250 PF04542 Sigma-70 region 2 KC397_02250 PF04539 Sigma-70 region 3 KC397_02250 PF04545 Sigma-70, region 4 KC397_02250 PF03979 Sigma-70 factor, region 1.1 KC397_02250 PF04546 Sigma-70, non-essential region KC397_02255 PF01807 CHC2 zinc finger KC397_02255 PF10410 DnaB-helicase binding domain of primase KC397_02255 PF08278 DNA primase DnaG DnaB-binding KC397_02255 PF08275 DNA primase catalytic core, N-terminal domain KC397_02260 PF09424 Yqey-like protein KC397_02265 PF01165 Ribosomal protein S21 KC397_02270 PF00814 Glycoprotease family KC397_02275 PF00561 alpha/beta hydrolase fold KC397_02280 PF02660 Glycerol-3-phosphate acyltransferase KC397_02285 PF02152 Dihydroneopterin aldolase KC397_02290 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KC397_02295 PF02673 Bacitracin resistance protein BacA KC397_02300 PF04977 Septum formation initiator KC397_02305 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KC397_02310 PF02542 YgbB family KC397_02315 PF01142 tRNA pseudouridine synthase D (TruD) KC397_02320 PF01975 Survival protein SurE KC397_02330 PF01551 Peptidase family M23 KC397_02330 PF01476 LysM domain KC397_02335 PF04542 Sigma-70 region 2 KC397_02335 PF00140 Sigma-70 factor, region 1.2 KC397_02335 PF04545 Sigma-70, region 4 KC397_02335 PF04539 Sigma-70 region 3 KC397_02340 PF05192 MutS domain III KC397_02340 PF01624 MutS domain I KC397_02340 PF00488 MutS domain V KC397_02340 PF05190 MutS family domain IV KC397_02340 PF05188 MutS domain II KC397_02345 PF02464 Competence-damaged protein KC397_02350 PF00154 recA bacterial DNA recombination protein KC397_02355 PF02631 RecX family KC397_02360 PF02272 DHHA1 domain KC397_02360 PF01411 tRNA synthetases class II (A) KC397_02360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KC397_02365 PF13840 ACT domain KC397_02365 PF00696 Amino acid kinase family KC397_02365 PF01842 ACT domain KC397_02370 PF02599 Global regulator protein family KC397_02415 PF04277 Oxaloacetate decarboxylase, gamma chain KC397_02420 PF00682 HMGL-like KC397_02420 PF02436 Conserved carboxylase domain KC397_02420 PF00364 Biotin-requiring enzyme KC397_02425 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit KC397_02430 PF08240 Alcohol dehydrogenase GroES-like domain KC397_02430 PF00107 Zinc-binding dehydrogenase KC397_02435 PF09335 SNARE associated Golgi protein KC397_02440 PF00675 Insulinase (Peptidase family M16) KC397_02440 PF05193 Peptidase M16 inactive domain KC397_02445 PF04262 Glutamate-cysteine ligase KC397_02455 PF02664 S-Ribosylhomocysteinase (LuxS) KC397_02460 PF00571 CBS domain KC397_02460 PF03471 Transporter associated domain KC397_02460 PF01595 Cyclin M transmembrane N-terminal domain KC397_02465 PF01578 Cytochrome C assembly protein KC397_02470 PF00448 SRP54-type protein, GTPase domain KC397_02470 PF02881 SRP54-type protein, helical bundle domain KC397_02470 PF02978 Signal peptide binding domain KC397_02475 PF00886 Ribosomal protein S16 KC397_02480 PF05239 PRC-barrel domain KC397_02480 PF01782 RimM N-terminal domain KC397_02485 PF01746 tRNA (Guanine-1)-methyltransferase KC397_02490 PF01245 Ribosomal protein L19 KC397_02495 PF13180 PDZ domain KC397_02500 PF13180 PDZ domain KC397_02500 PF00595 PDZ domain KC397_02505 PF06295 Protein of unknown function (DUF1043) KC397_02510 PF03969 AFG1-like ATPase KC397_02515 PF00572 Ribosomal protein L13 KC397_02520 PF00380 Ribosomal protein S9/S16 KC397_02525 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal KC397_02525 PF00355 Rieske [2Fe-2S] domain KC397_02530 PF00033 Cytochrome b/b6/petB KC397_02530 PF00032 Cytochrome b(C-terminal)/b6/petD KC397_02535 PF02167 Cytochrome C1 family KC397_02540 PF02798 Glutathione S-transferase, N-terminal domain KC397_02540 PF00043 Glutathione S-transferase, C-terminal domain KC397_02545 PF04386 Stringent starvation protein B KC397_02550 PF04972 BON domain KC397_02555 PF13580 SIS domain KC397_02560 PF02021 Uncharacterised protein family UPF0102 KC397_02565 PF04348 LppC putative lipoprotein KC397_02570 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KC397_02580 PF01795 MraW methylase family KC397_02585 PF04999 Cell division protein FtsL KC397_02590 PF00905 Penicillin binding protein transpeptidase domain KC397_02590 PF03717 Penicillin-binding Protein dimerisation domain KC397_02595 PF01225 Mur ligase family, catalytic domain KC397_02595 PF02875 Mur ligase family, glutamate ligase domain KC397_02595 PF08245 Mur ligase middle domain KC397_02600 PF01225 Mur ligase family, catalytic domain KC397_02600 PF02875 Mur ligase family, glutamate ligase domain KC397_02600 PF08245 Mur ligase middle domain KC397_02605 PF00953 Glycosyl transferase family 4 KC397_02605 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KC397_02610 PF08245 Mur ligase middle domain KC397_02610 PF02875 Mur ligase family, glutamate ligase domain KC397_02615 PF01098 Cell cycle protein KC397_02620 PF04101 Glycosyltransferase family 28 C-terminal domain KC397_02620 PF03033 Glycosyltransferase family 28 N-terminal domain KC397_02625 PF01225 Mur ligase family, catalytic domain KC397_02625 PF02875 Mur ligase family, glutamate ligase domain KC397_02625 PF08245 Mur ligase middle domain KC397_02630 PF03799 Cell division protein FtsQ KC397_02630 PF08478 POTRA domain, FtsQ-type KC397_02635 PF02491 SHS2 domain inserted in FTSA KC397_02640 PF12327 FtsZ family, C-terminal domain KC397_02640 PF00091 Tubulin/FtsZ family, GTPase domain KC397_02645 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KC397_02655 PF07516 SecA Wing and Scaffold domain KC397_02655 PF01043 SecA preprotein cross-linking domain KC397_02655 PF07517 SecA DEAD-like domain KC397_02655 PF02810 SEC-C motif KC397_02660 PF00293 NUDIX domain KC397_02665 PF05173 Dihydrodipicolinate reductase, C-terminus KC397_02665 PF01113 Dihydrodipicolinate reductase, N-terminus KC397_02670 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KC397_02670 PF00117 Glutamine amidotransferase class-I KC397_02675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KC397_02675 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KC397_02675 PF02142 MGS-like domain KC397_02680 PF01925 Sulfite exporter TauE/SafE KC397_02685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_02685 PF03466 LysR substrate binding domain KC397_02705 PF03458 UPF0126 domain KC397_02710 PF01497 Periplasmic binding protein KC397_02720 PF01048 Phosphorylase superfamily KC397_02730 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KC397_02730 PF07992 Pyridine nucleotide-disulphide oxidoreductase KC397_02735 PF01493 GXGXG motif KC397_02735 PF01645 Conserved region in glutamate synthase KC397_02735 PF04898 Glutamate synthase central domain KC397_02735 PF00310 Glutamine amidotransferases class-II KC397_02740 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KC397_02740 PF07992 Pyridine nucleotide-disulphide oxidoreductase KC397_02745 PF01645 Conserved region in glutamate synthase KC397_02745 PF04898 Glutamate synthase central domain KC397_02745 PF00310 Glutamine amidotransferases class-II KC397_02745 PF01493 GXGXG motif KC397_02750 PF04055 Radical SAM superfamily KC397_02750 PF16199 Radical_SAM C-terminal domain KC397_02755 PF00360 Phytochrome region KC397_02755 PF00990 Diguanylate cyclase, GGDEF domain KC397_02755 PF01590 GAF domain KC397_02755 PF00563 EAL domain KC397_02760 PF00072 Response regulator receiver domain KC397_02760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_02760 PF00989 PAS fold KC397_02760 PF01627 Hpt domain KC397_02760 PF18415 Histidine kinase receptor ArcB trans-membrane domain KC397_02760 PF00512 His Kinase A (phospho-acceptor) domain KC397_02770 PF00072 Response regulator receiver domain KC397_02770 PF00486 Transcriptional regulatory protein, C terminal KC397_02780 PF03737 Aldolase/RraA KC397_02790 PF00742 Homoserine dehydrogenase KC397_02790 PF01842 ACT domain KC397_02790 PF00696 Amino acid kinase family KC397_02790 PF03447 Homoserine dehydrogenase, NAD binding domain KC397_02790 PF13840 ACT domain KC397_02795 PF08544 GHMP kinases C terminal KC397_02795 PF00288 GHMP kinases N terminal domain KC397_02800 PF14821 Threonine synthase N terminus KC397_02800 PF00291 Pyridoxal-phosphate dependent enzyme KC397_02805 PF01228 Glycine radical KC397_02810 PF01261 Xylose isomerase-like TIM barrel KC397_02820 PF03167 Uracil DNA glycosylase superfamily KC397_02835 PF01235 Sodium:alanine symporter family KC397_02840 PF03883 Peroxide stress protein YaaA KC397_02850 PF01026 TatD related DNase KC397_02855 PF02653 Branched-chain amino acid transport system / permease component KC397_02860 PF02653 Branched-chain amino acid transport system / permease component KC397_02865 PF00005 ABC transporter KC397_02870 PF02608 ABC transporter substrate-binding protein PnrA-like KC397_02875 PF01773 Na+ dependent nucleoside transporter N-terminus KC397_02875 PF07662 Na+ dependent nucleoside transporter C-terminus KC397_02875 PF07670 Nucleoside recognition KC397_02880 PF01791 DeoC/LacD family aldolase KC397_02885 PF02885 Glycosyl transferase family, helical bundle domain KC397_02885 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KC397_02885 PF00591 Glycosyl transferase family, a/b domain KC397_02890 PF01676 Metalloenzyme superfamily KC397_02895 PF01048 Phosphorylase superfamily KC397_02905 PF18429 Domain of unknown function (DUF5609) KC397_02915 PF18073 Rubredoxin metal binding domain KC397_02920 PF00679 Elongation factor G C-terminus KC397_02920 PF14492 Elongation Factor G, domain II KC397_02920 PF03764 Elongation factor G, domain IV KC397_02920 PF00009 Elongation factor Tu GTP binding domain KC397_02920 PF03144 Elongation factor Tu domain 2 KC397_02925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_02925 PF03466 LysR substrate binding domain KC397_02935 PF03466 LysR substrate binding domain KC397_02935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_02945 PF00501 AMP-binding enzyme KC397_02950 PF02311 AraC-like ligand binding domain KC397_02950 PF12833 Helix-turn-helix domain KC397_02975 PF04972 BON domain KC397_02975 PF00263 Bacterial type II and III secretion system protein KC397_02975 PF13629 Pilus formation protein N terminal region KC397_03005 PF00437 Type II/IV secretion system protein KC397_03025 PF11849 Domain of unknown function (DUF3369) KC397_03030 PF02417 Chromate transporter KC397_03040 PF01263 Aldose 1-epimerase KC397_03045 PF01588 Putative tRNA binding domain KC397_03055 PF01544 CorA-like Mg2+ transporter protein KC397_03060 PF02080 TrkA-C domain KC397_03060 PF18030 RimK PreATP-grasp domain KC397_03060 PF08443 RimK-like ATP-grasp domain KC397_03065 PF00583 Acetyltransferase (GNAT) family KC397_03075 PF00962 Adenosine/AMP deaminase KC397_03080 PF14602 Hexapeptide repeat of succinyl-transferase KC397_03080 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle KC397_03085 PF07130 YebG protein KC397_03090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_03090 PF03466 LysR substrate binding domain KC397_03100 PF17946 RecC C-terminal domain KC397_03105 PF00580 UvrD/REP helicase N-terminal domain KC397_03105 PF12705 PD-(D/E)XK nuclease superfamily KC397_03105 PF13361 UvrD-like helicase C-terminal domain KC397_03110 PF13538 UvrD-like helicase C-terminal domain KC397_03120 PF00583 Acetyltransferase (GNAT) family KC397_03120 PF00696 Amino acid kinase family KC397_03130 PF03562 MltA specific insert domain KC397_03130 PF06725 3D domain KC397_03135 PF00899 ThiF family KC397_03140 PF02657 Fe-S metabolism associated domain KC397_03150 PF00266 Aminotransferase class-V KC397_03155 PF01965 DJ-1/PfpI family KC397_03160 PF08546 Ketopantoate reductase PanE/ApbA C terminal KC397_03160 PF02558 Ketopantoate reductase PanE/ApbA KC397_03165 PF03502 Nucleoside-specific channel-forming protein, Tsx KC397_03175 PF04542 Sigma-70 region 2 KC397_03175 PF04545 Sigma-70, region 4 KC397_03185 PF07690 Major Facilitator Superfamily KC397_03190 PF12838 4Fe-4S dicluster domain KC397_03195 PF01136 Peptidase family U32 KC397_03195 PF16325 Peptidase family U32 C-terminal domain KC397_03200 PF04381 Putative exonuclease, RdgC KC397_03205 PF00072 Response regulator receiver domain KC397_03205 PF00486 Transcriptional regulatory protein, C terminal KC397_03210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_03210 PF00512 His Kinase A (phospho-acceptor) domain KC397_03210 PF11808 Phosphate regulon sensor protein PhoR KC397_03210 PF00989 PAS fold KC397_03215 PF12849 PBP superfamily domain KC397_03220 PF02541 Ppx/GppA phosphatase family KC397_03225 PF02503 Polyphosphate kinase middle domain KC397_03225 PF13090 Polyphosphate kinase C-terminal domain 2 KC397_03225 PF17941 Polyphosphate kinase C-terminal domain 1 KC397_03225 PF13089 Polyphosphate kinase N-terminal domain KC397_03230 PF00528 Binding-protein-dependent transport system inner membrane component KC397_03235 PF00528 Binding-protein-dependent transport system inner membrane component KC397_03240 PF00005 ABC transporter KC397_03245 PF01895 PhoU domain KC397_03250 PF03976 Polyphosphate kinase 2 (PPK2) KC397_03255 PF03932 CutC family KC397_03260 PF10417 C-terminal domain of 1-Cys peroxiredoxin KC397_03260 PF00578 AhpC/TSA family KC397_03265 PF03466 LysR substrate binding domain KC397_03265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_03270 PF01274 Malate synthase KC397_03275 PF00463 Isocitrate lyase family KC397_03280 PF00571 CBS domain KC397_03285 PF02547 Queuosine biosynthesis protein KC397_03290 PF01702 Queuine tRNA-ribosyltransferase KC397_03295 PF02699 Preprotein translocase subunit KC397_03300 PF13721 SecD export protein N-terminal TM region KC397_03300 PF02355 Protein export membrane protein KC397_03300 PF07549 SecD/SecF GG Motif KC397_03305 PF07549 SecD/SecF GG Motif KC397_03305 PF02355 Protein export membrane protein KC397_03310 PF00857 Isochorismatase family KC397_03320 PF00459 Inositol monophosphatase family KC397_03325 PF00588 SpoU rRNA Methylase family KC397_03330 PF02082 Transcriptional regulator KC397_03335 PF00266 Aminotransferase class-V KC397_03340 PF01592 NifU-like N terminal domain KC397_03345 PF01521 Iron-sulphur cluster biosynthesis KC397_03350 PF00226 DnaJ domain KC397_03350 PF07743 HSCB C-terminal oligomerisation domain KC397_03355 PF00012 Hsp70 protein KC397_03360 PF00111 2Fe-2S iron-sulfur cluster binding domain KC397_03365 PF04384 Iron-sulphur cluster assembly KC397_03370 PF00883 Cytosol aminopeptidase family, catalytic domain KC397_03370 PF12404 Peptidase KC397_03375 PF00334 Nucleoside diphosphate kinase KC397_03380 PF04055 Radical SAM superfamily KC397_03385 PF13464 Domain of unknown function (DUF4115) KC397_03390 PF04551 GcpE protein KC397_03395 PF03129 Anticodon binding domain KC397_03395 PF13393 Histidyl-tRNA synthetase KC397_03400 PF09976 Tetratricopeptide repeat-like domain KC397_03405 PF13360 PQQ-like domain KC397_03410 PF01926 50S ribosome-binding GTPase KC397_03410 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KC397_03425 PF02601 Exonuclease VII, large subunit KC397_03425 PF13742 OB-fold nucleic acid binding domain KC397_03430 PF00571 CBS domain KC397_03430 PF00478 IMP dehydrogenase / GMP reductase domain KC397_03435 PF00117 Glutamine amidotransferase class-I KC397_03435 PF02540 NAD synthase KC397_03435 PF00958 GMP synthase C terminal domain KC397_03440 PF06483 Chitinase C KC397_03440 PF00704 Glycosyl hydrolases family 18 KC397_03445 PF01184 GPR1/FUN34/yaaH family KC397_03450 PF01758 Sodium Bile acid symporter family KC397_03455 PF07690 Major Facilitator Superfamily KC397_03460 PF01546 Peptidase family M20/M25/M40 KC397_03460 PF07687 Peptidase dimerisation domain KC397_03465 PF03466 LysR substrate binding domain KC397_03465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_03470 PF01235 Sodium:alanine symporter family KC397_03475 PF01266 FAD dependent oxidoreductase KC397_03480 PF03466 LysR substrate binding domain KC397_03480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_03510 PF00589 Phage integrase family KC397_03510 PF14659 Phage integrase, N-terminal SAM-like domain KC397_03510 PF13356 Arm DNA-binding domain KC397_03520 PF01668 SmpB protein KC397_03525 PF03364 Polyketide cyclase / dehydrase and lipid transport KC397_03530 PF03658 RnfH family Ubiquitin KC397_03535 PF04355 SmpA / OmlA family KC397_03540 PF02463 RecF/RecN/SMC N terminal domain KC397_03545 PF01513 ATP-NAD kinase KC397_03550 PF01025 GrpE KC397_03555 PF00375 Sodium:dicarboxylate symporter family KC397_03560 PF00012 Hsp70 protein KC397_03565 PF00684 DnaJ central domain KC397_03565 PF01556 DnaJ C terminal domain KC397_03565 PF00226 DnaJ domain KC397_03570 PF08334 Type II secretion system (T2SS), protein G KC397_03570 PF07963 Prokaryotic N-terminal methylation motif KC397_03595 PF03806 AbgT putative transporter family KC397_03600 PF00756 Putative esterase KC397_03605 PF00107 Zinc-binding dehydrogenase KC397_03605 PF08240 Alcohol dehydrogenase GroES-like domain KC397_03610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_03610 PF03466 LysR substrate binding domain KC397_03615 PF14437 MafB19-like deaminase KC397_03620 PF00497 Bacterial extracellular solute-binding proteins, family 3 KC397_03620 PF01464 Transglycosylase SLT domain KC397_03625 PF02769 AIR synthase related protein, C-terminal domain KC397_03625 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KC397_03625 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KC397_03635 PF06786 Uncharacterised protein family (UPF0253) KC397_03645 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KC397_03645 PF04073 Aminoacyl-tRNA editing domain KC397_03645 PF03129 Anticodon binding domain KC397_03650 PF18389 TrmO C-terminal domain KC397_03650 PF01980 tRNA-methyltransferase O KC397_03655 PF01197 Ribosomal protein L31 KC397_03660 PF00444 Ribosomal protein L36 KC397_03665 PF03806 AbgT putative transporter family KC397_03670 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KC397_03695 PF04287 tRNA pseudouridine synthase C KC397_03700 PF00849 RNA pseudouridylate synthase KC397_03705 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KC397_03705 PF02780 Transketolase, C-terminal domain KC397_03705 PF02779 Transketolase, pyrimidine binding domain KC397_03710 PF00348 Polyprenyl synthetase KC397_03715 PF02609 Exonuclease VII small subunit KC397_03720 PF01618 MotA/TolQ/ExbB proton channel family KC397_03725 PF13677 Membrane MotB of proton-channel complex MotA/MotB KC397_03725 PF00691 OmpA family KC397_03730 PF02568 Thiamine biosynthesis protein (ThiI) KC397_03730 PF02926 THUMP domain KC397_03735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_03735 PF03466 LysR substrate binding domain KC397_03745 PF04241 Protein of unknown function (DUF423) KC397_03750 PF18125 RlmM ferredoxin-like domain KC397_03750 PF01728 FtsJ-like methyltransferase KC397_03755 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KC397_03755 PF01367 5'-3' exonuclease, C-terminal SAM fold KC397_03760 PF11892 Domain of unknown function (DUF3412) KC397_03760 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases KC397_03760 PF03641 Possible lysine decarboxylase KC397_03765 PF00990 Diguanylate cyclase, GGDEF domain KC397_03775 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KC397_03775 PF14489 QueF-like protein KC397_03780 PF07348 Syd protein (SUKH-2) KC397_03785 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) KC397_03790 PF03180 NLPA lipoprotein KC397_03795 PF00528 Binding-protein-dependent transport system inner membrane component KC397_03800 PF00005 ABC transporter KC397_03800 PF09383 NIL domain KC397_03815 PF00356 Bacterial regulatory proteins, lacI family KC397_03825 PF00367 phosphotransferase system, EIIB KC397_03825 PF02378 Phosphotransferase system, EIIC KC397_03830 PF00128 Alpha amylase, catalytic domain KC397_03830 PF16657 Maltogenic Amylase, C-terminal domain KC397_03835 PF07690 Major Facilitator Superfamily KC397_03840 PF07730 Histidine kinase KC397_03840 PF05231 MASE1 KC397_03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_03845 PF00072 Response regulator receiver domain KC397_03845 PF00196 Bacterial regulatory proteins, luxR family KC397_03850 PF07690 Major Facilitator Superfamily KC397_03870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_03875 PF00873 AcrB/AcrD/AcrF family KC397_03885 PF00464 Serine hydroxymethyltransferase KC397_03895 PF04055 Radical SAM superfamily KC397_03895 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family KC397_03900 PF03099 Biotin/lipoate A/B protein ligase family KC397_03905 PF04359 Protein of unknown function (DUF493) KC397_03910 PF07943 Penicillin-binding protein 5, C-terminal domain KC397_03910 PF00768 D-alanyl-D-alanine carboxypeptidase KC397_03915 PF03330 Lytic transglycolase KC397_03915 PF05036 Sporulation related domain KC397_03920 PF01098 Cell cycle protein KC397_03925 PF03717 Penicillin-binding Protein dimerisation domain KC397_03925 PF00905 Penicillin binding protein transpeptidase domain KC397_03930 PF02590 Predicted SPOUT methyltransferase KC397_03940 PF14840 Processivity clamp loader gamma complex DNA pol III C-term KC397_03940 PF06144 DNA polymerase III, delta subunit KC397_03945 PF04390 Lipopolysaccharide-assembly KC397_03950 PF08264 Anticodon-binding domain of tRNA KC397_03950 PF00133 tRNA synthetases class I (I, L, M and V) KC397_03950 PF13603 Leucyl-tRNA synthetase, Domain 2 KC397_03955 PF07295 Zinc-ribbon containing domain KC397_03960 PF00795 Carbon-nitrogen hydrolase KC397_03965 PF00571 CBS domain KC397_03965 PF03471 Transporter associated domain KC397_03970 PF02130 Uncharacterized protein family UPF0054 KC397_03975 PF02562 PhoH-like protein KC397_03980 PF04055 Radical SAM superfamily KC397_03980 PF01938 TRAM domain KC397_03980 PF00919 Uncharacterized protein family UPF0004 KC397_03985 PF01494 FAD binding domain KC397_03990 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KC397_03995 PF05524 PEP-utilising enzyme, N-terminal KC397_03995 PF00391 PEP-utilising enzyme, mobile domain KC397_03995 PF02896 PEP-utilising enzyme, TIM barrel domain KC397_04000 PF00381 PTS HPr component phosphorylation site KC397_04005 PF00291 Pyridoxal-phosphate dependent enzyme KC397_04015 PF04354 ZipA, C-terminal FtsZ-binding domain KC397_04020 PF03120 NAD-dependent DNA ligase OB-fold domain KC397_04020 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KC397_04020 PF12826 Helix-hairpin-helix motif KC397_04020 PF00533 BRCA1 C Terminus (BRCT) domain KC397_04020 PF01653 NAD-dependent DNA ligase adenylation domain KC397_04025 PF13609 Gram-negative porin KC397_04035 PF13411 MerR HTH family regulatory protein KC397_04045 PF01145 SPFH domain / Band 7 family KC397_04045 PF16200 C-terminal region of band_7 KC397_04050 PF00085 Thioredoxin KC397_04055 PF00106 short chain dehydrogenase KC397_04060 PF08338 Domain of unknown function (DUF1731) KC397_04060 PF01370 NAD dependent epimerase/dehydratase family KC397_04065 PF07556 Protein of unknown function (DUF1538) KC397_04070 PF07556 Protein of unknown function (DUF1538) KC397_04085 PF12850 Calcineurin-like phosphoesterase superfamily domain KC397_04095 PF17323 Trans-membrane regulatory protein ToxS KC397_04100 PF00486 Transcriptional regulatory protein, C terminal KC397_04105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_04105 PF00183 Hsp90 protein KC397_04110 PF05191 Adenylate kinase, active site lid KC397_04115 PF00762 Ferrochelatase KC397_04120 PF00854 POT family KC397_04125 PF02357 Transcription termination factor nusG KC397_04130 PF00733 Asparagine synthase KC397_04130 PF13537 Glutamine amidotransferase domain KC397_04135 PF00999 Sodium/hydrogen exchanger family KC397_04135 PF02254 TrkA-N domain KC397_04140 PF01047 MarR family KC397_04140 PF00480 ROK family KC397_04145 PF01979 Amidohydrolase family KC397_04150 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KC397_04150 PF02378 Phosphotransferase system, EIIC KC397_04150 PF00367 phosphotransferase system, EIIB KC397_04155 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KC397_04155 PF00749 tRNA synthetases class I (E and Q), catalytic domain KC397_04165 PF01416 tRNA pseudouridine synthase KC397_04170 PF01039 Carboxyl transferase domain KC397_04170 PF17848 Acetyl-coA carboxylase zinc finger domain KC397_04175 PF02875 Mur ligase family, glutamate ligase domain KC397_04175 PF08245 Mur ligase middle domain KC397_04180 PF05036 Sporulation related domain KC397_04185 PF02674 Colicin V production protein KC397_04190 PF00156 Phosphoribosyl transferase domain KC397_04195 PF13726 Na+-H+ antiporter family KC397_04195 PF03553 Na+/H+ antiporter family KC397_04200 PF00929 Exonuclease KC397_04205 PF00691 OmpA family KC397_04205 PF18393 MotY N-terminal domain KC397_04210 PF10952 Protein of unknown function (DUF2753) KC397_04215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KC397_04220 PF10576 Iron-sulfur binding domain of endonuclease III KC397_04220 PF00633 Helix-hairpin-helix motif KC397_04220 PF00730 HhH-GPD superfamily base excision DNA repair protein KC397_04225 PF02508 Rnf-Nqr subunit, membrane protein KC397_04230 PF04205 FMN-binding domain KC397_04235 PF03116 NQR2, RnfD, RnfE family KC397_04240 PF10531 SLBB domain KC397_04240 PF13375 RnfC Barrel sandwich hybrid domain KC397_04240 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KC397_04240 PF12838 4Fe-4S dicluster domain KC397_04245 PF04060 Putative Fe-S cluster KC397_04250 PF02508 Rnf-Nqr subunit, membrane protein KC397_04260 PF00271 Helicase conserved C-terminal domain KC397_04260 PF02151 UvrB/uvrC motif KC397_04260 PF12344 Ultra-violet resistance protein B KC397_04260 PF17757 UvrB interaction domain KC397_04260 PF04851 Type III restriction enzyme, res subunit KC397_04265 PF00158 Sigma-54 interaction domain KC397_04265 PF02954 Bacterial regulatory protein, Fis family KC397_04265 PF00072 Response regulator receiver domain KC397_04270 PF01627 Hpt domain KC397_04275 PF01933 Uncharacterised protein family UPF0052 KC397_04280 PF06463 Molybdenum Cofactor Synthesis C KC397_04280 PF04055 Radical SAM superfamily KC397_04285 PF00994 Probable molybdopterin binding domain KC397_04290 PF01967 MoaC family KC397_04295 PF02597 ThiS family KC397_04300 PF02391 MoaE protein KC397_04305 PF00990 Diguanylate cyclase, GGDEF domain KC397_04305 PF08448 PAS fold KC397_04310 PF00571 CBS domain KC397_04310 PF01368 DHH family KC397_04310 PF02272 DHHA1 domain KC397_04310 PF01743 Poly A polymerase head domain KC397_04315 PF00403 Heavy-metal-associated domain KC397_04320 PF01048 Phosphorylase superfamily KC397_04330 PF09334 tRNA synthetases class I (M) KC397_04330 PF01588 Putative tRNA binding domain KC397_04335 PF10609 NUBPL iron-transfer P-loop NTPase KC397_04340 PF00485 Phosphoribulokinase / Uridine kinase family KC397_04345 PF05170 AsmA family KC397_04350 PF12557 Cob(I)alamin adenosyltransferase N terminal KC397_04350 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP KC397_04355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_04355 PF08447 PAS fold KC397_04355 PF13426 PAS domain KC397_04365 PF01451 Low molecular weight phosphotyrosine protein phosphatase KC397_04370 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KC397_04375 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KC397_04385 PF04542 Sigma-70 region 2 KC397_04385 PF08281 Sigma-70, region 4 KC397_04390 PF02803 Thiolase, C-terminal domain KC397_04390 PF00108 Thiolase, N-terminal domain KC397_04395 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KC397_04395 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KC397_04395 PF00378 Enoyl-CoA hydratase/isomerase KC397_04400 PF00881 Nitroreductase family KC397_04405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_04405 PF03466 LysR substrate binding domain KC397_04410 PF00072 Response regulator receiver domain KC397_04415 PF04304 Protein of unknown function (DUF454) KC397_04420 PF00156 Phosphoribosyl transferase domain KC397_04425 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KC397_04425 PF12170 DNA polymerase III tau subunit V interacting with alpha KC397_04425 PF12169 DNA polymerase III subunits gamma and tau domain III KC397_04430 PF02575 YbaB/EbfC DNA-binding family KC397_04435 PF02132 RecR protein KC397_04435 PF13662 Toprim domain KC397_04440 PF00230 Major intrinsic protein KC397_04445 PF03692 Putative zinc- or iron-chelating domain KC397_04450 PF03692 Putative zinc- or iron-chelating domain KC397_04470 PF13847 Methyltransferase domain KC397_04475 PF01263 Aldose 1-epimerase KC397_04480 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KC397_04480 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KC397_04485 PF01641 SelR domain KC397_04495 PF07023 Protein of unknown function (DUF1315) KC397_04500 PF00710 Asparaginase, N-terminal KC397_04500 PF17763 Glutaminase/Asparaginase C-terminal domain KC397_04505 PF01343 Peptidase family S49 KC397_04510 PF07992 Pyridine nucleotide-disulphide oxidoreductase KC397_04510 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KC397_04515 PF00551 Formyl transferase KC397_04515 PF01842 ACT domain KC397_04525 PF04851 Type III restriction enzyme, res subunit KC397_04525 PF13307 Helicase C-terminal domain KC397_04530 PF00814 Glycoprotease family KC397_04550 PF00501 AMP-binding enzyme KC397_04550 PF13193 AMP-binding enzyme C-terminal domain KC397_04555 PF01612 3'-5' exonuclease KC397_04555 PF00570 HRDC domain KC397_04565 PF03776 Septum formation topological specificity factor MinE KC397_04570 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KC397_04575 PF05209 Septum formation inhibitor MinC, N-terminal domain KC397_04575 PF03775 Septum formation inhibitor MinC, C-terminal domain KC397_04580 PF05166 YcgL domain KC397_04585 PF13406 Transglycosylase SLT domain KC397_04590 PF03466 LysR substrate binding domain KC397_04590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_04595 PF07662 Na+ dependent nucleoside transporter C-terminus KC397_04595 PF07670 Nucleoside recognition KC397_04595 PF01773 Na+ dependent nucleoside transporter N-terminus KC397_04600 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KC397_04600 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KC397_04610 PF00005 ABC transporter KC397_04610 PF08402 TOBE domain KC397_04615 PF00528 Binding-protein-dependent transport system inner membrane component KC397_04625 PF07690 Major Facilitator Superfamily KC397_04630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_04630 PF05231 MASE1 KC397_04630 PF07730 Histidine kinase KC397_04635 PF00072 Response regulator receiver domain KC397_04635 PF00196 Bacterial regulatory proteins, luxR family KC397_04660 PF00175 Oxidoreductase NAD-binding domain KC397_04660 PF00970 Oxidoreductase FAD-binding domain KC397_04680 PF00563 EAL domain KC397_04680 PF00990 Diguanylate cyclase, GGDEF domain KC397_04680 PF00498 FHA domain KC397_04690 PF00795 Carbon-nitrogen hydrolase KC397_04690 PF00583 Acetyltransferase (GNAT) family KC397_04700 PF03315 Serine dehydratase beta chain KC397_04700 PF03313 Serine dehydratase alpha chain KC397_04705 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KC397_04710 PF00072 Response regulator receiver domain KC397_04710 PF00486 Transcriptional regulatory protein, C terminal KC397_04715 PF00672 HAMP domain KC397_04715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_04715 PF00512 His Kinase A (phospho-acceptor) domain KC397_04720 PF01547 Bacterial extracellular solute-binding protein KC397_04725 PF04151 Bacterial pre-peptidase C-terminal domain KC397_04725 PF00082 Subtilase family KC397_04725 PF05922 Peptidase inhibitor I9 KC397_04730 PF03480 Bacterial extracellular solute-binding protein, family 7 KC397_04735 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KC397_04740 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KC397_04745 PF00072 Response regulator receiver domain KC397_04745 PF02954 Bacterial regulatory protein, Fis family KC397_04745 PF00158 Sigma-54 interaction domain KC397_04750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_04750 PF00512 His Kinase A (phospho-acceptor) domain KC397_04755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KC397_04755 PF05698 Bacterial trigger factor protein (TF) C-terminus KC397_04755 PF05697 Bacterial trigger factor protein (TF) KC397_04760 PF00574 Clp protease KC397_04765 PF06689 ClpX C4-type zinc finger KC397_04765 PF07724 AAA domain (Cdc48 subfamily) KC397_04765 PF10431 C-terminal, D2-small domain, of ClpB protein KC397_04770 PF02190 ATP-dependent protease La (LON) substrate-binding domain KC397_04770 PF05362 Lon protease (S16) C-terminal proteolytic domain KC397_04770 PF00004 ATPase family associated with various cellular activities (AAA) KC397_04775 PF00216 Bacterial DNA-binding protein KC397_04780 PF13145 PPIC-type PPIASE domain KC397_04790 PF02224 Cytidylate kinase KC397_04795 PF00575 S1 RNA binding domain KC397_04800 PF00216 Bacterial DNA-binding protein KC397_04805 PF06305 Lipopolysaccharide assembly protein A domain KC397_04810 PF18073 Rubredoxin metal binding domain KC397_04815 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KC397_04820 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KC397_04830 PF03466 LysR substrate binding domain KC397_04830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_04840 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KC397_04840 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KC397_04845 PF01037 Lrp/AsnC ligand binding domain KC397_04850 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KC397_04850 PF17854 FtsK alpha domain KC397_04850 PF09397 Ftsk gamma domain KC397_04850 PF01580 FtsK/SpoIIIE family KC397_04855 PF02600 Disulfide bond formation protein DsbB KC397_04860 PF06450 Bacterial Na+/H+ antiporter B (NhaB) KC397_04865 PF00392 Bacterial regulatory proteins, gntR family KC397_04865 PF07840 FadR C-terminal domain KC397_04880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_04880 PF00672 HAMP domain KC397_04885 PF01230 HIT domain KC397_04900 PF08139 Prokaryotic membrane lipoprotein lipid attachment site KC397_04900 PF13036 Peptidoglycan-synthase activator LpoB KC397_04905 PF01636 Phosphotransferase enzyme family KC397_04910 PF05728 Uncharacterised protein family (UPF0227) KC397_04915 PF07992 Pyridine nucleotide-disulphide oxidoreductase KC397_04930 PF00271 Helicase conserved C-terminal domain KC397_04930 PF17757 UvrB interaction domain KC397_04930 PF03461 TRCF domain KC397_04930 PF02559 CarD-like/TRCF domain KC397_04930 PF00270 DEAD/DEAH box helicase KC397_04940 PF02687 FtsX-like permease family KC397_04940 PF12704 MacB-like periplasmic core domain KC397_04945 PF00005 ABC transporter KC397_04950 PF12704 MacB-like periplasmic core domain KC397_04950 PF02687 FtsX-like permease family KC397_04960 PF03772 Competence protein KC397_04960 PF13567 Domain of unknown function (DUF4131) KC397_04960 PF00753 Metallo-beta-lactamase superfamily KC397_04965 PF00664 ABC transporter transmembrane region KC397_04965 PF00005 ABC transporter KC397_04970 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KC397_04975 PF03966 Trm112p-like protein KC397_04980 PF02348 Cytidylyltransferase KC397_04985 PF04293 SpoVR like protein KC397_04990 PF04285 Protein of unknown function (DUF444) KC397_04995 PF06798 PrkA serine protein kinase C-terminal domain KC397_04995 PF08298 PrkA AAA domain KC397_05005 PF03887 YfbU domain KC397_05015 PF04055 Radical SAM superfamily KC397_05020 PF00672 HAMP domain KC397_05020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_05030 PF01228 Glycine radical KC397_05030 PF02901 Pyruvate formate lyase-like KC397_05040 PF00005 ABC transporter KC397_05045 PF00497 Bacterial extracellular solute-binding proteins, family 3 KC397_05050 PF00528 Binding-protein-dependent transport system inner membrane component KC397_05055 PF00528 Binding-protein-dependent transport system inner membrane component KC397_05060 PF03372 Endonuclease/Exonuclease/phosphatase family KC397_05065 PF00672 HAMP domain KC397_05065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_05070 PF10689 Protein of unknown function (DUF2496) KC397_05075 PF07445 Primosomal replication protein priC KC397_05080 PF13307 Helicase C-terminal domain KC397_05080 PF06733 DEAD_2 KC397_05085 PF13609 Gram-negative porin KC397_05090 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KC397_05095 PF02810 SEC-C motif KC397_05100 PF08668 HDOD domain KC397_05100 PF00563 EAL domain KC397_05105 PF00149 Calcineurin-like phosphoesterase KC397_05110 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KC397_05115 PF01406 tRNA synthetases class I (C) catalytic domain KC397_05115 PF09190 DALR domain KC397_05120 PF02075 Crossover junction endodeoxyribonuclease RuvC KC397_05125 PF01330 RuvA N terminal domain KC397_05125 PF07499 RuvA, C-terminal domain KC397_05130 PF05496 Holliday junction DNA helicase RuvB P-loop domain KC397_05130 PF17864 RuvB AAA lid domain KC397_05130 PF05491 RuvB C-terminal winged helix domain KC397_05135 PF01654 Cytochrome bd terminal oxidase subunit I KC397_05140 PF02322 Cytochrome bd terminal oxidase subunit II KC397_05145 PF08173 Membrane bound YbgT-like protein KC397_05155 PF03061 Thioesterase superfamily KC397_05160 PF01618 MotA/TolQ/ExbB proton channel family KC397_05165 PF02472 Biopolymer transport protein ExbD/TolR KC397_05175 PF04052 TolB amino-terminal domain KC397_05175 PF07676 WD40-like Beta Propeller Repeat KC397_05180 PF00691 OmpA family KC397_05185 PF16331 TolA binding protein trimerisation KC397_05185 PF13174 Tetratricopeptide repeat KC397_05190 PF02445 Quinolinate synthetase A protein KC397_05200 PF09308 LuxQ, periplasmic KC397_05200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_05200 PF00512 His Kinase A (phospho-acceptor) domain KC397_05200 PF00072 Response regulator receiver domain KC397_05205 PF06610 L-alanine exporter KC397_05215 PF00171 Aldehyde dehydrogenase family KC397_05230 PF00440 Bacterial regulatory proteins, tetR family KC397_05230 PF16295 Tetracyclin repressor-like, C-terminal domain KC397_05235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KC397_05235 PF02770 Acyl-CoA dehydrogenase, middle domain KC397_05235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KC397_05235 PF09317 Domain of unknown function (DUF1974) KC397_05240 PF07055 Enoyl reductase FAD binding domain KC397_05240 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase KC397_05240 PF12241 Trans-2-enoyl-CoA reductase catalytic region KC397_05245 PF06826 Predicted Permease Membrane Region KC397_05245 PF02080 TrkA-C domain KC397_05250 PF00462 Glutaredoxin KC397_05255 PF00465 Iron-containing alcohol dehydrogenase KC397_05260 PF01380 SIS domain KC397_05260 PF01418 Helix-turn-helix domain, rpiR family KC397_05265 PF00282 Pyridoxal-dependent decarboxylase conserved domain KC397_05275 PF03956 Lysine exporter LysO KC397_05285 PF04994 TfoX C-terminal domain KC397_05285 PF04993 TfoX N-terminal domain KC397_05300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_05300 PF00512 His Kinase A (phospho-acceptor) domain KC397_05300 PF00989 PAS fold KC397_05310 PF00266 Aminotransferase class-V KC397_05315 PF11842 Domain of unknown function (DUF3362) KC397_05315 PF04055 Radical SAM superfamily KC397_05315 PF08497 Radical SAM N-terminal KC397_05320 PF12848 ABC transporter KC397_05320 PF00005 ABC transporter KC397_05325 PF03358 NADPH-dependent FMN reductase KC397_05340 PF00072 Response regulator receiver domain KC397_05340 PF00486 Transcriptional regulatory protein, C terminal KC397_05345 PF00672 HAMP domain KC397_05345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_05345 PF00512 His Kinase A (phospho-acceptor) domain KC397_05345 PF00989 PAS fold KC397_05350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KC397_05355 PF01177 Asp/Glu/Hydantoin racemase KC397_05370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_05370 PF00672 HAMP domain KC397_05370 PF12729 Four helix bundle sensory module for signal transduction KC397_05375 PF00563 EAL domain KC397_05375 PF00196 Bacterial regulatory proteins, luxR family KC397_05380 PF13417 Glutathione S-transferase, N-terminal domain KC397_05380 PF00043 Glutathione S-transferase, C-terminal domain KC397_05385 PF00043 Glutathione S-transferase, C-terminal domain KC397_05385 PF02798 Glutathione S-transferase, N-terminal domain KC397_05405 PF05193 Peptidase M16 inactive domain KC397_05405 PF00675 Insulinase (Peptidase family M16) KC397_05420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_05420 PF03466 LysR substrate binding domain KC397_05425 PF08267 Cobalamin-independent synthase, N-terminal domain KC397_05425 PF01717 Cobalamin-independent synthase, Catalytic domain KC397_05435 PF03795 YCII-related domain KC397_05440 PF03061 Thioesterase superfamily KC397_05445 PF04279 Intracellular septation protein A KC397_05455 PF00375 Sodium:dicarboxylate symporter family KC397_05460 PF00290 Tryptophan synthase alpha chain KC397_05465 PF00291 Pyridoxal-phosphate dependent enzyme KC397_05470 PF00218 Indole-3-glycerol phosphate synthase KC397_05470 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KC397_05475 PF02885 Glycosyl transferase family, helical bundle domain KC397_05475 PF00591 Glycosyl transferase family, a/b domain KC397_05480 PF00117 Glutamine amidotransferase class-I KC397_05485 PF00425 chorismate binding enzyme KC397_05485 PF04715 Anthranilate synthase component I, N terminal region KC397_05495 PF02811 PHP domain KC397_05500 PF01300 Telomere recombination KC397_05505 PF00849 RNA pseudouridylate synthase KC397_05505 PF01479 S4 domain KC397_05530 PF00664 ABC transporter transmembrane region KC397_05530 PF00005 ABC transporter KC397_05535 PF00664 ABC transporter transmembrane region KC397_05535 PF00005 ABC transporter KC397_05540 PF07992 Pyridine nucleotide-disulphide oxidoreductase KC397_05560 PF00266 Aminotransferase class-V KC397_05565 PF00465 Iron-containing alcohol dehydrogenase KC397_05570 PF00171 Aldehyde dehydrogenase family KC397_05575 PF09339 IclR helix-turn-helix domain KC397_05575 PF01614 Bacterial transcriptional regulator KC397_05580 PF01614 Bacterial transcriptional regulator KC397_05580 PF09339 IclR helix-turn-helix domain KC397_05590 PF02698 DUF218 domain KC397_05600 PF00376 MerR family regulatory protein KC397_05600 PF09278 MerR, DNA binding KC397_05610 PF13344 Haloacid dehalogenase-like hydrolase KC397_05610 PF00293 NUDIX domain KC397_05630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_05630 PF03466 LysR substrate binding domain KC397_05640 PF00144 Beta-lactamase KC397_05655 PF00390 Malic enzyme, N-terminal domain KC397_05655 PF03949 Malic enzyme, NAD binding domain KC397_05660 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KC397_05660 PF00271 Helicase conserved C-terminal domain KC397_05660 PF04408 Helicase associated domain (HA2) KC397_05660 PF00270 DEAD/DEAH box helicase KC397_05660 PF11898 Domain of unknown function (DUF3418) KC397_05670 PF03553 Na+/H+ antiporter family KC397_05675 PF00120 Glutamine synthetase, catalytic domain KC397_05680 PF07722 Peptidase C26 KC397_05685 PF01381 Helix-turn-helix KC397_05685 PF07883 Cupin domain KC397_05690 PF00171 Aldehyde dehydrogenase family KC397_05695 PF01266 FAD dependent oxidoreductase KC397_05700 PF00795 Carbon-nitrogen hydrolase KC397_05705 PF04371 Porphyromonas-type peptidyl-arginine deiminase KC397_05710 PF00171 Aldehyde dehydrogenase family KC397_05715 PF00202 Aminotransferase class-III KC397_05720 PF01259 SAICAR synthetase KC397_05740 PF13488 Glycine zipper KC397_05740 PF00691 OmpA family KC397_05755 PF01565 FAD binding domain KC397_05755 PF13183 4Fe-4S dicluster domain KC397_05755 PF02913 FAD linked oxidases, C-terminal domain KC397_05760 PF04191 Phospholipid methyltransferase KC397_05775 PF00221 Aromatic amino acid lyase KC397_05780 PF01175 Urocanase Rossmann-like domain KC397_05780 PF17392 Urocanase C-terminal domain KC397_05780 PF17391 Urocanase N-terminal domain KC397_05785 PF00491 Arginase family KC397_05790 PF01979 Amidohydrolase family KC397_05795 PF00392 Bacterial regulatory proteins, gntR family KC397_05795 PF07702 UTRA domain KC397_05800 PF04266 ASCH domain KC397_05805 PF04269 Protein of unknown function, DUF440 KC397_05810 PF01132 Elongation factor P (EF-P) OB domain KC397_05810 PF08207 Elongation factor P (EF-P) KOW-like domain KC397_05810 PF09285 Elongation factor P, C-terminal KC397_05820 PF00563 EAL domain KC397_05820 PF00990 Diguanylate cyclase, GGDEF domain KC397_05820 PF13426 PAS domain KC397_05825 PF00136 DNA polymerase family B KC397_05825 PF03104 DNA polymerase family B, exonuclease domain KC397_05830 PF00196 Bacterial regulatory proteins, luxR family KC397_05830 PF00072 Response regulator receiver domain KC397_05835 PF01541 GIY-YIG catalytic domain KC397_05835 PF08459 UvrC Helix-hairpin-helix N-terminal KC397_05835 PF02151 UvrB/uvrC motif KC397_05840 PF01066 CDP-alcohol phosphatidyltransferase KC397_05865 PF07995 Glucose / Sorbosone dehydrogenase KC397_05870 PF00072 Response regulator receiver domain KC397_05870 PF00990 Diguanylate cyclase, GGDEF domain KC397_05875 PF03466 LysR substrate binding domain KC397_05875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_05885 PF01409 tRNA synthetases class II core domain (F) KC397_05885 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KC397_05890 PF03484 tRNA synthetase B5 domain KC397_05890 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KC397_05890 PF01588 Putative tRNA binding domain KC397_05890 PF03483 B3/4 domain KC397_05890 PF03147 Ferredoxin-fold anticodon binding domain KC397_05895 PF00216 Bacterial DNA-binding protein KC397_05900 PF05488 PAAR motif KC397_05905 PF05724 Thiopurine S-methyltransferase (TPMT) KC397_05910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_05910 PF08447 PAS fold KC397_05910 PF13426 PAS domain KC397_05915 PF02222 ATP-grasp domain KC397_05935 PF00563 EAL domain KC397_05935 PF00990 Diguanylate cyclase, GGDEF domain KC397_05935 PF08447 PAS fold KC397_05935 PF08448 PAS fold KC397_05940 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KC397_05940 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region KC397_05945 PF04172 LrgB-like family KC397_05950 PF03788 LrgA family KC397_05955 PF00929 Exonuclease KC397_05955 PF08411 Exonuclease C-terminal KC397_05965 PF00375 Sodium:dicarboxylate symporter family KC397_05970 PF13460 NAD(P)H-binding KC397_05975 PF01613 Flavin reductase like domain KC397_05980 PF02277 Phosphoribosyltransferase KC397_05985 PF02654 Cobalamin-5-phosphate synthase KC397_05990 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KC397_06000 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KC397_06005 PF01032 FecCD transport family KC397_06010 PF00005 ABC transporter KC397_06060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_06060 PF03466 LysR substrate binding domain KC397_06070 PF01863 Protein of unknown function DUF45 KC397_06075 PF05971 RNA methyltransferase KC397_06090 PF04204 Homoserine O-succinyltransferase KC397_06110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_06125 PF17203 Single cache domain 3 KC397_06125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_06125 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KC397_06125 PF00989 PAS fold KC397_06130 PF12431 Transcriptional regulator KC397_06130 PF00072 Response regulator receiver domain KC397_06140 PF00072 Response regulator receiver domain KC397_06140 PF01584 CheW-like domain KC397_06145 PF03714 Bacterial pullanase-associated domain KC397_06145 PF11852 Domain of unknown function (DUF3372) KC397_06145 PF18494 Pullulanase Ins domain KC397_06145 PF17967 Pullulanase N2 domain KC397_06145 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KC397_06155 PF00990 Diguanylate cyclase, GGDEF domain KC397_06155 PF00072 Response regulator receiver domain KC397_06200 PF00313 'Cold-shock' DNA-binding domain KC397_06215 PF13426 PAS domain KC397_06215 PF08447 PAS fold KC397_06215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_06230 PF01699 Sodium/calcium exchanger protein KC397_06235 PF05552 Conserved TM helix KC397_06235 PF00924 Mechanosensitive ion channel KC397_06245 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KC397_06245 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KC397_06250 PF00486 Transcriptional regulatory protein, C terminal KC397_06250 PF00072 Response regulator receiver domain KC397_06255 PF00672 HAMP domain KC397_06255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_06255 PF00512 His Kinase A (phospho-acceptor) domain KC397_06260 PF00141 Peroxidase KC397_06280 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KC397_06280 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP KC397_06285 PF02975 Methylamine dehydrogenase, L chain KC397_06290 PF00578 AhpC/TSA family KC397_06300 PF06433 Methylamine dehydrogenase heavy chain (MADH) KC397_06305 PF10672 S-adenosylmethionine-dependent methyltransferase KC397_06305 PF17785 PUA-like domain KC397_06310 PF00708 Acylphosphatase KC397_06315 PF04358 DsrC like protein KC397_06320 PF01027 Inhibitor of apoptosis-promoting Bax1 KC397_06325 PF00005 ABC transporter KC397_06330 PF00528 Binding-protein-dependent transport system inner membrane component KC397_06335 PF00528 Binding-protein-dependent transport system inner membrane component KC397_06340 PF00497 Bacterial extracellular solute-binding proteins, family 3 KC397_06345 PF10414 Sirohaem synthase dimerisation region KC397_06345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KC397_06345 PF14824 Sirohaem biosynthesis protein central KC397_06355 PF04055 Radical SAM superfamily KC397_06360 PF06508 Queuosine biosynthesis protein QueC KC397_06365 PF03264 NapC/NirT cytochrome c family, N-terminal region KC397_06370 PF01568 Molydopterin dinucleotide binding domain KC397_06370 PF00384 Molybdopterin oxidoreductase KC397_06370 PF18364 Molybdopterin oxidoreductase N-terminal domain KC397_06380 PF00990 Diguanylate cyclase, GGDEF domain KC397_06380 PF00072 Response regulator receiver domain KC397_06390 PF07859 alpha/beta hydrolase fold KC397_06400 PF13417 Glutathione S-transferase, N-terminal domain KC397_06400 PF04399 Glutaredoxin 2, C terminal domain KC397_06415 PF00990 Diguanylate cyclase, GGDEF domain KC397_06425 PF05230 MASE2 domain KC397_06425 PF00990 Diguanylate cyclase, GGDEF domain KC397_06430 PF00012 Hsp70 protein KC397_06435 PF00012 Hsp70 protein KC397_06445 PF00990 Diguanylate cyclase, GGDEF domain KC397_06470 PF03264 NapC/NirT cytochrome c family, N-terminal region KC397_06480 PF02525 Flavodoxin-like fold KC397_06485 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KC397_06485 PF00271 Helicase conserved C-terminal domain KC397_06485 PF04408 Helicase associated domain (HA2) KC397_06485 PF11898 Domain of unknown function (DUF3418) KC397_06485 PF00270 DEAD/DEAH box helicase KC397_06510 PF02796 Helix-turn-helix domain of resolvase KC397_06510 PF00239 Resolvase, N terminal domain KC397_06580 PF05638 Type VI secretion system effector, Hcp KC397_06585 PF04717 Type VI secretion system, phage-baseplate injector KC397_06585 PF16671 Actin cross-linking domain KC397_06610 PF01235 Sodium:alanine symporter family KC397_06625 PF01641 SelR domain KC397_06630 PF04461 Protein of unknown function (DUF520) KC397_06635 PF00793 DAHP synthetase I family KC397_06640 PF00391 PEP-utilising enzyme, mobile domain KC397_06640 PF02896 PEP-utilising enzyme, TIM barrel domain KC397_06640 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KC397_06655 PF17783 CvfB-like winged helix domain KC397_06655 PF13509 S1 domain KC397_06660 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF KC397_06660 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF KC397_06660 PF01189 16S rRNA methyltransferase RsmB/F KC397_06665 PF02470 MlaD protein KC397_06670 PF04403 Paraquat-inducible protein A KC397_06675 PF00664 ABC transporter transmembrane region KC397_06675 PF00005 ABC transporter KC397_06680 PF13185 GAF domain KC397_06685 PF17516 ProQ C-terminal domain KC397_06685 PF04352 ProQ/FINO family KC397_06690 PF17804 Tail specific protease N-terminal domain KC397_06690 PF03572 Peptidase family S41 KC397_06690 PF00595 PDZ domain KC397_06690 PF11818 C-terminal domain of tail specific protease (DUF3340) KC397_06705 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KC397_06705 PF11940 Domain of unknown function (DUF3458) Ig-like fold KC397_06705 PF01433 Peptidase family M1 domain KC397_06715 PF05088 Bacterial NAD-glutamate dehydrogenase KC397_06720 PF01180 Dihydroorotate dehydrogenase KC397_06725 PF07126 Cell-division protein ZapC KC397_06730 PF02926 THUMP domain KC397_06730 PF10672 S-adenosylmethionine-dependent methyltransferase KC397_06730 PF01170 Putative RNA methylase family UPF0020 KC397_06740 PF00005 ABC transporter KC397_06740 PF12848 ABC transporter KC397_06740 PF16326 ABC transporter C-terminal domain KC397_06750 PF04957 Ribosome modulation factor KC397_06755 PF07977 FabA-like domain KC397_06760 PF05362 Lon protease (S16) C-terminal proteolytic domain KC397_06760 PF13654 AAA domain KC397_06765 PF06303 MatP N-terminal domain KC397_06765 PF17414 MatP C-terminal ribbon-helix-helix domain KC397_06860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_06860 PF09308 LuxQ, periplasmic KC397_06860 PF00072 Response regulator receiver domain KC397_06860 PF00512 His Kinase A (phospho-acceptor) domain KC397_06875 PF00115 Cytochrome C and Quinol oxidase polypeptide I KC397_06890 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KC397_06890 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP KC397_06900 PF00403 Heavy-metal-associated domain KC397_06915 PF00027 Cyclic nucleotide-binding domain KC397_06915 PF13545 Crp-like helix-turn-helix domain KC397_06920 PF00582 Universal stress protein family KC397_06925 PF01171 PP-loop family KC397_06945 PF08402 TOBE domain KC397_06945 PF00005 ABC transporter KC397_06950 PF00528 Binding-protein-dependent transport system inner membrane component KC397_06955 PF00528 Binding-protein-dependent transport system inner membrane component KC397_06960 PF13416 Bacterial extracellular solute-binding protein KC397_06965 PF13416 Bacterial extracellular solute-binding protein KC397_06970 PF02146 Sir2 family KC397_06975 PF00909 Ammonium Transporter Family KC397_06990 PF13247 4Fe-4S dicluster domain KC397_06995 PF01568 Molydopterin dinucleotide binding domain KC397_06995 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KC397_06995 PF00384 Molybdopterin oxidoreductase KC397_07005 PF02613 Nitrate reductase delta subunit KC397_07025 PF02634 FdhD/NarQ family KC397_07040 PF00512 His Kinase A (phospho-acceptor) domain KC397_07040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_07040 PF00989 PAS fold KC397_07045 PF02954 Bacterial regulatory protein, Fis family KC397_07045 PF00158 Sigma-54 interaction domain KC397_07045 PF00072 Response regulator receiver domain KC397_07050 PF12849 PBP superfamily domain KC397_07055 PF00528 Binding-protein-dependent transport system inner membrane component KC397_07060 PF00005 ABC transporter KC397_07060 PF08402 TOBE domain KC397_07065 PF12804 MobA-like NTP transferase domain KC397_07070 PF00994 Probable molybdopterin binding domain KC397_07070 PF03454 MoeA C-terminal region (domain IV) KC397_07070 PF03453 MoeA N-terminal region (domain I and II) KC397_07080 PF00480 ROK family KC397_07085 PF03942 DTW domain KC397_07095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_07095 PF12729 Four helix bundle sensory module for signal transduction KC397_07095 PF00672 HAMP domain KC397_07100 PF00877 NlpC/P60 family KC397_07110 PF03881 Fructosamine kinase KC397_07120 PF00677 Lumazine binding domain KC397_07125 PF01554 MatE KC397_07135 PF14743 DNA ligase OB-like domain KC397_07135 PF01068 ATP dependent DNA ligase domain KC397_07140 PF01734 Patatin-like phospholipase KC397_07155 PF03544 Gram-negative bacterial TonB protein C-terminal KC397_07160 PF02472 Biopolymer transport protein ExbD/TolR KC397_07165 PF01618 MotA/TolQ/ExbB proton channel family KC397_07170 PF01618 MotA/TolQ/ExbB proton channel family KC397_07180 PF08212 Lipocalin-like domain KC397_07185 PF00753 Metallo-beta-lactamase superfamily KC397_07190 PF00056 lactate/malate dehydrogenase, NAD binding domain KC397_07190 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KC397_07195 PF13416 Bacterial extracellular solute-binding protein KC397_07200 PF00528 Binding-protein-dependent transport system inner membrane component KC397_07205 PF00528 Binding-protein-dependent transport system inner membrane component KC397_07210 PF00005 ABC transporter KC397_07210 PF17912 MalK OB fold domain KC397_07215 PF00455 DeoR C terminal sensor domain KC397_07215 PF08220 DeoR-like helix-turn-helix domain KC397_07220 PF03009 Glycerophosphoryl diester phosphodiesterase family KC397_07225 PF04074 YhcH/YjgK/YiaL KC397_07245 PF14497 Glutathione S-transferase, C-terminal domain KC397_07245 PF02798 Glutathione S-transferase, N-terminal domain KC397_07255 PF04209 homogentisate 1,2-dioxygenase KC397_07260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KC397_07265 PF12792 CSS motif domain associated with EAL KC397_07265 PF00563 EAL domain KC397_07270 PF07687 Peptidase dimerisation domain KC397_07270 PF01546 Peptidase family M20/M25/M40 KC397_07285 PF07690 Major Facilitator Superfamily KC397_07290 PF00529 HlyD membrane-fusion protein of T1SS KC397_07290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_07300 PF13193 AMP-binding enzyme C-terminal domain KC397_07300 PF16177 Acetyl-coenzyme A synthetase N-terminus KC397_07300 PF00501 AMP-binding enzyme KC397_07305 PF04303 PrpF protein KC397_07310 PF00330 Aconitase family (aconitate hydratase) KC397_07310 PF00694 Aconitase C-terminal domain KC397_07315 PF00285 Citrate synthase, C-terminal domain KC397_07330 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KC397_07330 PF12833 Helix-turn-helix domain KC397_07330 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KC397_07330 PF02805 Metal binding domain of Ada KC397_07350 PF01970 Tripartite tricarboxylate transporter TctA family KC397_07365 PF02653 Branched-chain amino acid transport system / permease component KC397_07370 PF00005 ABC transporter KC397_07375 PF13407 Periplasmic binding protein domain KC397_07380 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KC397_07380 PF02837 Glycosyl hydrolases family 2, sugar binding domain KC397_07380 PF02929 Beta galactosidase small chain KC397_07380 PF00703 Glycosyl hydrolases family 2 KC397_07380 PF16353 Domain of unknown function(DUF4981) KC397_07390 PF04400 (Na+)-NQR maturation NqrM KC397_07395 PF00881 Nitroreductase family KC397_07400 PF03992 Antibiotic biosynthesis monooxygenase KC397_07405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_07405 PF03466 LysR substrate binding domain KC397_07410 PF02954 Bacterial regulatory protein, Fis family KC397_07410 PF00072 Response regulator receiver domain KC397_07410 PF00158 Sigma-54 interaction domain KC397_07415 PF00497 Bacterial extracellular solute-binding proteins, family 3 KC397_07415 PF00512 His Kinase A (phospho-acceptor) domain KC397_07415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_07420 PF00939 Sodium:sulfate symporter transmembrane region KC397_07425 PF00892 EamA-like transporter family KC397_07440 PF13302 Acetyltransferase (GNAT) domain KC397_07445 PF00158 Sigma-54 interaction domain KC397_07445 PF18024 Helix-turn-helix domain KC397_07450 PF05128 Domain of unknown function (DUF697) KC397_07455 PF04317 YcjX-like family, DUF463 KC397_07470 PF00425 chorismate binding enzyme KC397_07470 PF04715 Anthranilate synthase component I, N terminal region KC397_07475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_07475 PF00512 His Kinase A (phospho-acceptor) domain KC397_07475 PF09308 LuxQ, periplasmic KC397_07475 PF00072 Response regulator receiver domain KC397_07485 PF00293 NUDIX domain KC397_07490 PF03222 Tryptophan/tyrosine permease family KC397_07495 PF03315 Serine dehydratase beta chain KC397_07495 PF03313 Serine dehydratase alpha chain KC397_07500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_07505 PF12704 MacB-like periplasmic core domain KC397_07505 PF00005 ABC transporter KC397_07505 PF02687 FtsX-like permease family KC397_07510 PF02321 Outer membrane efflux protein KC397_07515 PF01242 6-pyruvoyl tetrahydropterin synthase KC397_07520 PF17200 Single Cache domain 2 KC397_07520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_07520 PF00672 HAMP domain KC397_07525 PF01336 OB-fold nucleic acid binding domain KC397_07525 PF00152 tRNA synthetases class II (D, K and N) KC397_07540 PF00155 Aminotransferase class I and II KC397_07550 PF00571 CBS domain KC397_07555 PF00929 Exonuclease KC397_07555 PF07733 Bacterial DNA polymerase III alpha NTPase domain KC397_07555 PF14579 Helix-hairpin-helix motif KC397_07555 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KC397_07555 PF02811 PHP domain KC397_07560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_07560 PF00672 HAMP domain KC397_07565 PF02028 BCCT, betaine/carnitine/choline family transporter KC397_07570 PF01047 MarR family KC397_07575 PF00196 Bacterial regulatory proteins, luxR family KC397_07575 PF00072 Response regulator receiver domain KC397_07580 PF07730 Histidine kinase KC397_07580 PF17200 Single Cache domain 2 KC397_07585 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KC397_07595 PF03480 Bacterial extracellular solute-binding protein, family 7 KC397_07610 PF00753 Metallo-beta-lactamase superfamily KC397_07615 PF05951 Bacterial protein of unknown function (DUF882) KC397_07620 PF01471 Putative peptidoglycan binding domain KC397_07620 PF03734 L,D-transpeptidase catalytic domain KC397_07645 PF00925 GTP cyclohydrolase II KC397_07655 PF00521 DNA gyrase/topoisomerase IV, subunit A KC397_07655 PF03989 DNA gyrase C-terminal domain, beta-propeller KC397_07665 PF00317 Ribonucleotide reductase, all-alpha domain KC397_07665 PF03477 ATP cone domain KC397_07665 PF02867 Ribonucleotide reductase, barrel domain KC397_07670 PF00268 Ribonucleotide reductase, small chain KC397_07675 PF00970 Oxidoreductase FAD-binding domain KC397_07675 PF00175 Oxidoreductase NAD-binding domain KC397_07675 PF00111 2Fe-2S iron-sulfur cluster binding domain KC397_07685 PF00994 Probable molybdopterin binding domain KC397_07695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KC397_07695 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KC397_07700 PF01202 Shikimate kinase KC397_07705 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KC397_07715 PF03480 Bacterial extracellular solute-binding protein, family 7 KC397_07725 PF00672 HAMP domain KC397_07725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_07725 PF17200 Single Cache domain 2 KC397_07735 PF16653 Saccharopine dehydrogenase C-terminal domain KC397_07735 PF03435 Saccharopine dehydrogenase NADP binding domain KC397_07740 PF00202 Aminotransferase class-III KC397_07755 PF05736 OprF membrane domain KC397_07755 PF00691 OmpA family KC397_07760 PF06965 Na+/H+ antiporter 1 KC397_07775 PF00005 ABC transporter KC397_07780 PF01554 MatE KC397_07785 PF11066 Protein of unknown function (DUF2867) KC397_07785 PF13460 NAD(P)H-binding KC397_07795 PF07690 Major Facilitator Superfamily KC397_07800 PF00849 RNA pseudouridylate synthase KC397_07800 PF01479 S4 domain KC397_07805 PF00271 Helicase conserved C-terminal domain KC397_07805 PF04851 Type III restriction enzyme, res subunit KC397_07815 PF00072 Response regulator receiver domain KC397_07815 PF00486 Transcriptional regulatory protein, C terminal KC397_07820 PF00512 His Kinase A (phospho-acceptor) domain KC397_07820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_07820 PF00672 HAMP domain KC397_07825 PF01386 Ribosomal L25p family KC397_07830 PF02028 BCCT, betaine/carnitine/choline family transporter KC397_07840 PF00313 'Cold-shock' DNA-binding domain KC397_07850 PF01717 Cobalamin-independent synthase, Catalytic domain KC397_07855 PF00990 Diguanylate cyclase, GGDEF domain KC397_07870 PF03222 Tryptophan/tyrosine permease family KC397_07880 PF00005 ABC transporter KC397_07895 PF06945 Protein of unknown function (DUF1289) KC397_07905 PF13416 Bacterial extracellular solute-binding protein KC397_07910 PF00528 Binding-protein-dependent transport system inner membrane component KC397_07915 PF00005 ABC transporter KC397_07920 PF01066 CDP-alcohol phosphatidyltransferase KC397_07925 PF00701 Dihydrodipicolinate synthetase family KC397_07935 PF00849 RNA pseudouridylate synthase KC397_07940 PF10415 Fumarase C C-terminus KC397_07940 PF00206 Lyase KC397_07945 PF00209 Sodium:neurotransmitter symporter family KC397_07950 PF13091 PLD-like domain KC397_07950 PF13396 Phospholipase_D-nuclease N-terminal KC397_07955 PF01053 Cys/Met metabolism PLP-dependent enzyme KC397_07965 PF08534 Redoxin KC397_07985 PF13673 Acetyltransferase (GNAT) domain KC397_07985 PF13302 Acetyltransferase (GNAT) domain KC397_07985 PF03352 Methyladenine glycosylase KC397_07985 PF00117 Glutamine amidotransferase class-I KC397_07985 PF00958 GMP synthase C terminal domain KC397_07990 PF00873 AcrB/AcrD/AcrF family KC397_07995 PF13533 Biotin-lipoyl like KC397_08000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_08000 PF00529 HlyD membrane-fusion protein of T1SS KC397_08010 PF06667 Phage shock protein B KC397_08015 PF04012 PspA/IM30 family KC397_08020 PF02954 Bacterial regulatory protein, Fis family KC397_08020 PF00158 Sigma-54 interaction domain KC397_08025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KC397_08030 PF00528 Binding-protein-dependent transport system inner membrane component KC397_08035 PF00528 Binding-protein-dependent transport system inner membrane component KC397_08035 PF12911 N-terminal TM domain of oligopeptide transport permease C KC397_08040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KC397_08040 PF00005 ABC transporter KC397_08045 PF00005 ABC transporter KC397_08060 PF01368 DHH family KC397_08060 PF02833 DHHA2 domain KC397_08080 PF01568 Molydopterin dinucleotide binding domain KC397_08080 PF18364 Molybdopterin oxidoreductase N-terminal domain KC397_08080 PF00384 Molybdopterin oxidoreductase KC397_08085 PF03264 NapC/NirT cytochrome c family, N-terminal region KC397_08090 PF06796 Periplasmic nitrate reductase protein NapE KC397_08095 PF03649 Uncharacterised protein family (UPF0014) KC397_08100 PF01226 Formate/nitrite transporter KC397_08115 PF03466 LysR substrate binding domain KC397_08115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_08120 PF01370 NAD dependent epimerase/dehydratase family KC397_08125 PF02698 DUF218 domain KC397_08130 PF00265 Thymidine kinase KC397_08135 PF02938 GAD domain KC397_08135 PF00152 tRNA synthetases class II (D, K and N) KC397_08135 PF01336 OB-fold nucleic acid binding domain KC397_08145 PF13649 Methyltransferase domain KC397_08150 PF08003 Protein of unknown function (DUF1698) KC397_08155 PF08443 RimK-like ATP-grasp domain KC397_08155 PF18030 RimK PreATP-grasp domain KC397_08165 PF18030 RimK PreATP-grasp domain KC397_08165 PF08443 RimK-like ATP-grasp domain KC397_08170 PF16330 MukB hinge domain KC397_08170 PF04310 MukB N-terminal KC397_08175 PF04288 MukE-like family KC397_08180 PF03882 MukF winged-helix domain KC397_08180 PF17193 MukF C-terminal domain KC397_08180 PF17192 MukF middle domain KC397_08190 PF02698 DUF218 domain KC397_08195 PF00072 Response regulator receiver domain KC397_08195 PF00486 Transcriptional regulatory protein, C terminal KC397_08200 PF02613 Nitrate reductase delta subunit KC397_08205 PF00356 Bacterial regulatory proteins, lacI family KC397_08210 PF04993 TfoX N-terminal domain KC397_08210 PF04994 TfoX C-terminal domain KC397_08230 PF00534 Glycosyl transferases group 1 KC397_08230 PF08323 Starch synthase catalytic domain KC397_08235 PF00483 Nucleotidyl transferase KC397_08240 PF00072 Response regulator receiver domain KC397_08240 PF00990 Diguanylate cyclase, GGDEF domain KC397_08245 PF08272 Topoisomerase I zinc-ribbon-like KC397_08245 PF01396 Topoisomerase DNA binding C4 zinc finger KC397_08245 PF01131 DNA topoisomerase KC397_08245 PF01751 Toprim domain KC397_08250 PF10692 Protein of unknown function (DUF2498) KC397_08255 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KC397_08265 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KC397_08270 PF04377 Arginine-tRNA-protein transferase, C terminus KC397_08270 PF04376 Arginine-tRNA-protein transferase, N terminus KC397_08275 PF01176 Translation initiation factor 1A / IF-1 KC397_08280 PF17871 AAA lid domain KC397_08280 PF07724 AAA domain (Cdc48 subfamily) KC397_08280 PF02861 Clp amino terminal domain, pathogenicity island component KC397_08280 PF00004 ATPase family associated with various cellular activities (AAA) KC397_08280 PF10431 C-terminal, D2-small domain, of ClpB protein KC397_08285 PF02617 ATP-dependent Clp protease adaptor protein ClpS KC397_08290 PF00313 'Cold-shock' DNA-binding domain KC397_08295 PF03971 Monomeric isocitrate dehydrogenase KC397_08300 PF00849 RNA pseudouridylate synthase KC397_08305 PF01502 Phosphoribosyl-AMP cyclohydrolase KC397_08305 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase KC397_08310 PF00977 Histidine biosynthesis protein KC397_08315 PF00977 Histidine biosynthesis protein KC397_08320 PF00117 Glutamine amidotransferase class-I KC397_08325 PF08645 Polynucleotide kinase 3 phosphatase KC397_08325 PF00475 Imidazoleglycerol-phosphate dehydratase KC397_08330 PF00155 Aminotransferase class I and II KC397_08335 PF00815 Histidinol dehydrogenase KC397_08340 PF01634 ATP phosphoribosyltransferase KC397_08340 PF08029 HisG, C-terminal domain KC397_08345 PF02954 Bacterial regulatory protein, Fis family KC397_08345 PF00072 Response regulator receiver domain KC397_08345 PF00158 Sigma-54 interaction domain KC397_08350 PF03553 Na+/H+ antiporter family KC397_08355 PF00816 H-NS histone family KC397_08360 PF00294 pfkB family carbohydrate kinase KC397_08370 PF04356 Protein of unknown function (DUF489) KC397_08375 PF08328 Adenylosuccinate lyase C-terminal KC397_08375 PF00206 Lyase KC397_08420 PF01435 Peptidase family M48 KC397_08435 PF08241 Methyltransferase domain KC397_08440 PF00155 Aminotransferase class I and II KC397_08445 PF06968 Biotin and Thiamin Synthesis associated domain KC397_08445 PF04055 Radical SAM superfamily KC397_08450 PF00202 Aminotransferase class-III KC397_08460 PF18267 Rubredoxin NAD+ reductase C-terminal domain KC397_08460 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KC397_08460 PF07992 Pyridine nucleotide-disulphide oxidoreductase KC397_08460 PF04324 BFD-like [2Fe-2S] binding domain KC397_08460 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KC397_08460 PF13806 Rieske-like [2Fe-2S] domain KC397_08465 PF00005 ABC transporter KC397_08470 PF00528 Binding-protein-dependent transport system inner membrane component KC397_08475 PF00005 ABC transporter KC397_08480 PF00072 Response regulator receiver domain KC397_08480 PF03861 ANTAR domain KC397_08490 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KC397_08490 PF10414 Sirohaem synthase dimerisation region KC397_08490 PF14824 Sirohaem biosynthesis protein central KC397_08495 PF04324 BFD-like [2Fe-2S] binding domain KC397_08495 PF00384 Molybdopterin oxidoreductase KC397_08495 PF01568 Molydopterin dinucleotide binding domain KC397_08495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KC397_08505 PF02403 Seryl-tRNA synthetase N-terminal domain KC397_08505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KC397_08510 PF16193 AAA C-terminal domain KC397_08510 PF12002 MgsA AAA+ ATPase C terminal KC397_08510 PF00004 ATPase family associated with various cellular activities (AAA) KC397_08515 PF03548 Outer membrane lipoprotein carrier protein LolA KC397_08520 PF07517 SecA DEAD-like domain KC397_08520 PF01043 SecA preprotein cross-linking domain KC397_08520 PF07516 SecA Wing and Scaffold domain KC397_08520 PF02810 SEC-C motif KC397_08530 PF01207 Dihydrouridine synthase (Dus) KC397_08535 PF05230 MASE2 domain KC397_08535 PF00990 Diguanylate cyclase, GGDEF domain KC397_08540 PF00005 ABC transporter KC397_08545 PF02653 Branched-chain amino acid transport system / permease component KC397_08555 PF04217 Protein of unknown function, DUF412 KC397_08560 PF00871 Acetokinase family KC397_08565 PF01515 Phosphate acetyl/butaryl transferase KC397_08565 PF07085 DRTGG domain KC397_08570 PF13194 Domain of unknown function (DUF4010) KC397_08575 PF13409 Glutathione S-transferase, N-terminal domain KC397_08585 PF00005 ABC transporter KC397_08585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KC397_08590 PF00005 ABC transporter KC397_08590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KC397_08595 PF12911 N-terminal TM domain of oligopeptide transport permease C KC397_08595 PF00528 Binding-protein-dependent transport system inner membrane component KC397_08600 PF00528 Binding-protein-dependent transport system inner membrane component KC397_08605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KC397_08610 PF04820 Tryptophan halogenase KC397_08630 PF01553 Acyltransferase KC397_08630 PF00501 AMP-binding enzyme KC397_08630 PF13193 AMP-binding enzyme C-terminal domain KC397_08635 PF00550 Phosphopantetheine attachment site KC397_08640 PF00550 Phosphopantetheine attachment site KC397_08660 PF00535 Glycosyl transferase family 2 KC397_08665 PF00221 Aromatic amino acid lyase KC397_08690 PF00109 Beta-ketoacyl synthase, N-terminal domain KC397_08690 PF02801 Beta-ketoacyl synthase, C-terminal domain KC397_08705 PF00109 Beta-ketoacyl synthase, N-terminal domain KC397_08705 PF02801 Beta-ketoacyl synthase, C-terminal domain KC397_08715 PF00294 pfkB family carbohydrate kinase KC397_08720 PF02264 LamB porin KC397_08720 PF11471 Maltoporin periplasmic N-terminal extension KC397_08725 PF00990 Diguanylate cyclase, GGDEF domain KC397_08725 PF13426 PAS domain KC397_08725 PF00563 EAL domain KC397_08730 PF08244 Glycosyl hydrolases family 32 C terminal KC397_08730 PF00251 Glycosyl hydrolases family 32 N-terminal domain KC397_08735 PF00356 Bacterial regulatory proteins, lacI family KC397_08740 PF00367 phosphotransferase system, EIIB KC397_08740 PF02378 Phosphotransferase system, EIIC KC397_08745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_08745 PF00512 His Kinase A (phospho-acceptor) domain KC397_08750 PF00486 Transcriptional regulatory protein, C terminal KC397_08750 PF00072 Response regulator receiver domain KC397_08755 PF00593 TonB dependent receptor KC397_08755 PF07715 TonB-dependent Receptor Plug Domain KC397_08760 PF06445 GyrI-like small molecule binding domain KC397_08760 PF12833 Helix-turn-helix domain KC397_08765 PF07690 Major Facilitator Superfamily KC397_08770 PF00529 HlyD membrane-fusion protein of T1SS KC397_08770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_08775 PF02321 Outer membrane efflux protein KC397_08785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KC397_08790 PF00528 Binding-protein-dependent transport system inner membrane component KC397_08795 PF00528 Binding-protein-dependent transport system inner membrane component KC397_08795 PF12911 N-terminal TM domain of oligopeptide transport permease C KC397_08800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KC397_08800 PF00005 ABC transporter KC397_08805 PF08543 Phosphomethylpyrimidine kinase KC397_08810 PF02110 Hydroxyethylthiazole kinase family KC397_08815 PF02581 Thiamine monophosphate synthase KC397_08820 PF17954 Quercetinase C-terminal cupin domain KC397_08820 PF02678 Pirin KC397_08825 PF00232 Glycosyl hydrolase family 1 KC397_08830 PF00356 Bacterial regulatory proteins, lacI family KC397_08840 PF00005 ABC transporter KC397_08845 PF00668 Condensation domain KC397_08845 PF00501 AMP-binding enzyme KC397_08845 PF13193 AMP-binding enzyme C-terminal domain KC397_08845 PF00550 Phosphopantetheine attachment site KC397_08845 PF00975 Thioesterase domain KC397_08855 PF07715 TonB-dependent Receptor Plug Domain KC397_08860 PF01032 FecCD transport family KC397_08865 PF01032 FecCD transport family KC397_08870 PF01497 Periplasmic binding protein KC397_08875 PF00296 Luciferase-like monooxygenase KC397_08880 PF13193 AMP-binding enzyme C-terminal domain KC397_08880 PF00668 Condensation domain KC397_08880 PF00550 Phosphopantetheine attachment site KC397_08880 PF00501 AMP-binding enzyme KC397_08885 PF00668 Condensation domain KC397_08885 PF00501 AMP-binding enzyme KC397_08885 PF08242 Methyltransferase domain KC397_08885 PF00550 Phosphopantetheine attachment site KC397_08890 PF00793 DAHP synthetase I family KC397_08900 PF00425 chorismate binding enzyme KC397_08905 PF00501 AMP-binding enzyme KC397_08905 PF13193 AMP-binding enzyme C-terminal domain KC397_08910 PF00857 Isochorismatase family KC397_08910 PF00550 Phosphopantetheine attachment site KC397_08915 PF07690 Major Facilitator Superfamily KC397_08920 PF02525 Flavodoxin-like fold KC397_08925 PF00999 Sodium/hydrogen exchanger family KC397_08925 PF02254 TrkA-N domain KC397_08960 PF02322 Cytochrome bd terminal oxidase subunit II KC397_08965 PF01654 Cytochrome bd terminal oxidase subunit I KC397_08970 PF00155 Aminotransferase class I and II KC397_08970 PF00392 Bacterial regulatory proteins, gntR family KC397_08975 PF03707 Bacterial signalling protein N terminal repeat KC397_08975 PF00990 Diguanylate cyclase, GGDEF domain KC397_08975 PF00563 EAL domain KC397_08985 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KC397_08990 PF00034 Cytochrome c KC397_09000 PF13693 Winged helix-turn-helix DNA-binding KC397_09005 PF09039 Mu DNA binding, I gamma subdomain KC397_09005 PF09299 Mu transposase, C-terminal KC397_09005 PF02914 Bacteriophage Mu transposase KC397_09005 PF02316 Mu DNA-binding domain KC397_09010 PF13401 AAA domain KC397_09010 PF09077 Mu B transposition protein, C terminal KC397_09120 PF08461 Ribonuclease R winged-helix domain KC397_09125 PF11985 Protein of unknown function (DUF3486) KC397_09130 PF03237 Terminase-like family KC397_09135 PF06074 Protein of unknown function (DUF935) KC397_09150 PF10124 Mu-like prophage major head subunit gpT KC397_09170 PF07030 Protein of unknown function (DUF1320) KC397_09190 PF04984 Phage tail sheath protein subtilisin-like domain KC397_09190 PF17482 Phage tail sheath C-terminal domain KC397_09200 PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 KC397_09230 PF04865 Baseplate J-like protein KC397_09235 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) KC397_09250 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KC397_09250 PF01568 Molydopterin dinucleotide binding domain KC397_09250 PF00384 Molybdopterin oxidoreductase KC397_09255 PF03916 Polysulphide reductase, NrfD KC397_09260 PF13247 4Fe-4S dicluster domain KC397_09265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_09265 PF00512 His Kinase A (phospho-acceptor) domain KC397_09270 PF00196 Bacterial regulatory proteins, luxR family KC397_09270 PF00072 Response regulator receiver domain KC397_09290 PF00884 Sulfatase KC397_09290 PF08019 Phosphoethanolamine transferase EptA/EptB KC397_09295 PF01219 Prokaryotic diacylglycerol kinase KC397_09300 PF00884 Sulfatase KC397_09305 PF00270 DEAD/DEAH box helicase KC397_09305 PF00271 Helicase conserved C-terminal domain KC397_09315 PF01569 PAP2 superfamily KC397_09320 PF00072 Response regulator receiver domain KC397_09320 PF00486 Transcriptional regulatory protein, C terminal KC397_09325 PF00512 His Kinase A (phospho-acceptor) domain KC397_09325 PF08521 Two-component sensor kinase N-terminal KC397_09325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_09340 PF11604 Copper binding periplasmic protein CusF KC397_09345 PF00873 AcrB/AcrD/AcrF family KC397_09355 PF09334 tRNA synthetases class I (M) KC397_09355 PF01588 Putative tRNA binding domain KC397_09375 PF12833 Helix-turn-helix domain KC397_09380 PF01161 Phosphatidylethanolamine-binding protein KC397_09395 PF00313 'Cold-shock' DNA-binding domain KC397_09405 PF00892 EamA-like transporter family KC397_09410 PF03358 NADPH-dependent FMN reductase KC397_09435 PF12852 Cupin KC397_09435 PF12833 Helix-turn-helix domain KC397_09440 PF12146 Serine aminopeptidase, S33 KC397_09455 PF00106 short chain dehydrogenase KC397_09460 PF00106 short chain dehydrogenase KC397_09470 PF00106 short chain dehydrogenase KC397_09485 PF13533 Biotin-lipoyl like KC397_09490 PF00440 Bacterial regulatory proteins, tetR family KC397_09525 PF02082 Transcriptional regulator KC397_09545 PF00360 Phytochrome region KC397_09545 PF00990 Diguanylate cyclase, GGDEF domain KC397_09545 PF01590 GAF domain KC397_09545 PF00563 EAL domain KC397_09565 PF00196 Bacterial regulatory proteins, luxR family KC397_09565 PF17874 MalT-like TPR region KC397_09570 PF00990 Diguanylate cyclase, GGDEF domain KC397_09615 PF14464 Prokaryotic homologs of the JAB domain KC397_09630 PF01734 Patatin-like phospholipase KC397_09665 PF00990 Diguanylate cyclase, GGDEF domain KC397_09665 PF13185 GAF domain KC397_09675 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KC397_09680 PF09619 Type III secretion system lipoprotein chaperone (YscW) KC397_09690 PF13404 AsnC-type helix-turn-helix domain KC397_09690 PF01037 Lrp/AsnC ligand binding domain KC397_09695 PF00291 Pyridoxal-phosphate dependent enzyme KC397_09705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KC397_09705 PF18269 T3SS EscN ATPase C-terminal domain KC397_09715 PF01706 FliG C-terminal domain KC397_09715 PF14841 FliG middle domain KC397_09715 PF14842 FliG N-terminal domain KC397_09720 PF08345 Flagellar M-ring protein C-terminal KC397_09720 PF01514 Secretory protein of YscJ/FliF family KC397_09725 PF02049 Flagellar hook-basal body complex protein FliE KC397_09730 PF00158 Sigma-54 interaction domain KC397_09730 PF00072 Response regulator receiver domain KC397_09730 PF02954 Bacterial regulatory protein, Fis family KC397_09735 PF00691 OmpA family KC397_09745 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KC397_09750 PF00813 FliP family KC397_09755 PF01313 Bacterial export proteins, family 3 KC397_09760 PF01311 Bacterial export proteins, family 1 KC397_09765 PF01312 FlhB HrpN YscU SpaS Family KC397_09770 PF00771 FHIPEP family KC397_09780 PF00700 Bacterial flagellin C-terminal helical region KC397_09780 PF00669 Bacterial flagellin N-terminal helical region KC397_09785 PF02465 Flagellar hook-associated protein 2 N-terminus KC397_09785 PF07195 Flagellar hook-associated protein 2 C-terminus KC397_09785 PF07196 Flagellin hook IN motif KC397_09805 PF03748 Flagellar basal body-associated protein FliL KC397_09810 PF04542 Sigma-70 region 2 KC397_09810 PF04545 Sigma-70, region 4 KC397_09815 PF01618 MotA/TolQ/ExbB proton channel family KC397_09820 PF13677 Membrane MotB of proton-channel complex MotA/MotB KC397_09820 PF00691 OmpA family KC397_09830 PF04170 NlpE N-terminal domain KC397_09835 PF01370 NAD dependent epimerase/dehydratase family KC397_09870 PF00460 Flagella basal body rod protein KC397_09870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KC397_09875 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KC397_09875 PF10135 Rod binding protein KC397_09880 PF02119 Flagellar P-ring protein KC397_09885 PF02107 Flagellar L-ring protein KC397_09890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KC397_09890 PF00460 Flagella basal body rod protein KC397_09895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KC397_09895 PF00460 Flagella basal body rod protein KC397_09900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KC397_09900 PF00460 Flagella basal body rod protein KC397_09900 PF07559 Flagellar basal body protein FlaE KC397_09905 PF13861 FlgD Tudor-like domain KC397_09905 PF03963 Flagellar hook capping protein - N-terminal region KC397_09905 PF13860 FlgD Ig-like domain KC397_09910 PF00460 Flagella basal body rod protein KC397_09910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KC397_09915 PF00460 Flagella basal body rod protein KC397_09935 PF01464 Transglycosylase SLT domain KC397_09935 PF01476 LysM domain KC397_09940 PF06445 GyrI-like small molecule binding domain KC397_09960 PF07690 Major Facilitator Superfamily KC397_09965 PF03601 Conserved hypothetical protein 698 KC397_09975 PF13193 AMP-binding enzyme C-terminal domain KC397_09975 PF00501 AMP-binding enzyme KC397_09980 PF13378 Enolase C-terminal domain-like KC397_09985 PF00378 Enoyl-CoA hydratase/isomerase KC397_09990 PF12697 Alpha/beta hydrolase family KC397_09995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KC397_09995 PF16582 Middle domain of thiamine pyrophosphate KC397_09995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KC397_10000 PF00425 chorismate binding enzyme KC397_10005 PF00155 Aminotransferase class I and II KC397_10015 PF01966 HD domain KC397_10015 PF13286 Phosphohydrolase-associated domain KC397_10035 PF02540 NAD synthase KC397_10035 PF00795 Carbon-nitrogen hydrolase KC397_10050 PF08496 Peptidase family S49 N-terminal KC397_10050 PF01343 Peptidase family S49 KC397_10055 PF00106 short chain dehydrogenase KC397_10070 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KC397_10070 PF07733 Bacterial DNA polymerase III alpha NTPase domain KC397_10070 PF01336 OB-fold nucleic acid binding domain KC397_10070 PF14579 Helix-hairpin-helix motif KC397_10070 PF02811 PHP domain KC397_10075 PF00072 Response regulator receiver domain KC397_10075 PF01584 CheW-like domain KC397_10080 PF00480 ROK family KC397_10085 PF02887 Pyruvate kinase, alpha/beta domain KC397_10085 PF00224 Pyruvate kinase, barrel domain KC397_10090 PF01734 Patatin-like phospholipase KC397_10105 PF00209 Sodium:neurotransmitter symporter family KC397_10120 PF02378 Phosphotransferase system, EIIC KC397_10120 PF00367 phosphotransferase system, EIIB KC397_10130 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KC397_10130 PF00367 phosphotransferase system, EIIB KC397_10130 PF02378 Phosphotransferase system, EIIC KC397_10135 PF01026 TatD related DNase KC397_10140 PF09115 DNA polymerase III, delta subunit, C terminal KC397_10145 PF02223 Thymidylate kinase KC397_10150 PF02618 YceG-like family KC397_10155 PF01063 Amino-transferase class IV KC397_10160 PF02801 Beta-ketoacyl synthase, C-terminal domain KC397_10160 PF00109 Beta-ketoacyl synthase, N-terminal domain KC397_10165 PF00550 Phosphopantetheine attachment site KC397_10175 PF00698 Acyl transferase domain KC397_10180 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KC397_10180 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KC397_10185 PF02504 Fatty acid synthesis protein KC397_10190 PF01783 Ribosomal L32p protein family KC397_10195 PF02620 Large ribosomal RNA subunit accumulation protein YceD KC397_10200 PF02545 Maf-like protein KC397_10205 PF01479 S4 domain KC397_10205 PF00849 RNA pseudouridylate synthase KC397_10210 PF12111 Polyribonucleotide phosphorylase C terminal KC397_10210 PF00575 S1 RNA binding domain KC397_10210 PF10150 Ribonuclease E/G family KC397_10220 PF00916 Sulfate permease family KC397_10220 PF01740 STAS domain KC397_10230 PF00171 Aldehyde dehydrogenase family KC397_10230 PF00465 Iron-containing alcohol dehydrogenase KC397_10235 PF01914 MarC family integral membrane protein KC397_10240 PF00027 Cyclic nucleotide-binding domain KC397_10240 PF00520 Ion transport protein KC397_10245 PF01118 Semialdehyde dehydrogenase, NAD binding domain KC397_10245 PF02774 Semialdehyde dehydrogenase, dimerisation domain KC397_10250 PF03553 Na+/H+ antiporter family KC397_10260 PF04245 37-kD nucleoid-associated bacterial protein KC397_10265 PF07208 Protein of unknown function (DUF1414) KC397_10270 PF11893 Domain of unknown function (DUF3413) KC397_10270 PF00884 Sulfatase KC397_10290 PF00155 Aminotransferase class I and II KC397_10300 PF00850 Histone deacetylase domain KC397_10310 PF01261 Xylose isomerase-like TIM barrel KC397_10310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KC397_10315 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KC397_10315 PF08501 Shikimate dehydrogenase substrate binding domain KC397_10315 PF01488 Shikimate / quinate 5-dehydrogenase KC397_10320 PF01970 Tripartite tricarboxylate transporter TctA family KC397_10335 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KC397_10345 PF04909 Amidohydrolase KC397_10350 PF04303 PrpF protein KC397_10355 PF03737 Aldolase/RraA KC397_10360 PF04909 Amidohydrolase KC397_10365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_10365 PF03466 LysR substrate binding domain KC397_10375 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KC397_10380 PF00248 Aldo/keto reductase family KC397_10395 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KC397_10400 PF01494 FAD binding domain KC397_10405 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit KC397_10405 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KC397_10410 PF01131 DNA topoisomerase KC397_10410 PF01751 Toprim domain KC397_10415 PF00462 Glutaredoxin KC397_10420 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KC397_10420 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KC397_10440 PF04333 MlaA lipoprotein KC397_10445 PF03918 Cytochrome C biogenesis protein KC397_10450 PF03918 Cytochrome C biogenesis protein KC397_10455 PF08534 Redoxin KC397_10460 PF01578 Cytochrome C assembly protein KC397_10460 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal KC397_10465 PF03100 CcmE KC397_10470 PF04995 Heme exporter protein D (CcmD) KC397_10475 PF01578 Cytochrome C assembly protein KC397_10480 PF03379 CcmB protein KC397_10485 PF00005 ABC transporter KC397_10495 PF01584 CheW-like domain KC397_10505 PF13614 AAA domain KC397_10510 PF01339 CheB methylesterase KC397_10510 PF00072 Response regulator receiver domain KC397_10515 PF01627 Hpt domain KC397_10515 PF00072 Response regulator receiver domain KC397_10515 PF01584 CheW-like domain KC397_10515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_10515 PF02895 Signal transducing histidine kinase, homodimeric domain KC397_10520 PF04344 Chemotaxis phosphatase, CheZ KC397_10525 PF00072 Response regulator receiver domain KC397_10530 PF04542 Sigma-70 region 2 KC397_10530 PF04539 Sigma-70 region 3 KC397_10530 PF04545 Sigma-70, region 4 KC397_10535 PF10609 NUBPL iron-transfer P-loop NTPase KC397_10540 PF00448 SRP54-type protein, GTPase domain KC397_10545 PF00771 FHIPEP family KC397_10550 PF00300 Histidine phosphatase superfamily (branch 1) KC397_10555 PF00675 Insulinase (Peptidase family M16) KC397_10555 PF05193 Peptidase M16 inactive domain KC397_10555 PF16187 Middle or third domain of peptidase_M16 KC397_10560 PF06185 YecM protein KC397_10565 PF00750 tRNA synthetases class I (R) KC397_10565 PF05746 DALR anticodon binding domain KC397_10565 PF03485 Arginyl tRNA synthetase N terminal domain KC397_10585 PF02421 Ferrous iron transport protein B KC397_10585 PF07670 Nucleoside recognition KC397_10585 PF07664 Ferrous iron transport protein B C terminus KC397_10590 PF04023 FeoA domain KC397_10595 PF12833 Helix-turn-helix domain KC397_10600 PF01297 Zinc-uptake complex component A periplasmic KC397_10605 PF00005 ABC transporter KC397_10610 PF00950 ABC 3 transport family KC397_10615 PF02629 CoA binding domain KC397_10615 PF00549 CoA-ligase KC397_10620 PF00549 CoA-ligase KC397_10620 PF08442 ATP-grasp domain KC397_10625 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KC397_10625 PF02817 e3 binding domain KC397_10625 PF00364 Biotin-requiring enzyme KC397_10630 PF16078 2-oxoglutarate dehydrogenase N-terminus KC397_10630 PF00676 Dehydrogenase E1 component KC397_10630 PF16870 2-oxoglutarate dehydrogenase C-terminal KC397_10630 PF02779 Transketolase, pyrimidine binding domain KC397_10635 PF13085 2Fe-2S iron-sulfur cluster binding domain KC397_10640 PF02910 Fumarate reductase flavoprotein C-term KC397_10640 PF00890 FAD binding domain KC397_10645 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KC397_10650 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KC397_10655 PF00285 Citrate synthase, C-terminal domain KC397_10660 PF01784 NIF3 (NGG1p interacting factor 3) KC397_10670 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KC397_10670 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KC397_10670 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KC397_10670 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KC397_10675 PF03925 SeqA protein C-terminal domain KC397_10675 PF17206 SeqA protein N-terminal domain KC397_10680 PF12697 Alpha/beta hydrolase family KC397_10690 PF00258 Flavodoxin KC397_10695 PF04172 LrgB-like family KC397_10700 PF03788 LrgA family KC397_10705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_10705 PF03466 LysR substrate binding domain KC397_10715 PF01475 Ferric uptake regulator family KC397_10720 PF01118 Semialdehyde dehydrogenase, NAD binding domain KC397_10720 PF02774 Semialdehyde dehydrogenase, dimerisation domain KC397_10725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KC397_10725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KC397_10725 PF11890 Domain of unknown function (DUF3410) KC397_10730 PF00109 Beta-ketoacyl synthase, N-terminal domain KC397_10730 PF02801 Beta-ketoacyl synthase, C-terminal domain KC397_10735 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KC397_10735 PF01266 FAD dependent oxidoreductase KC397_10745 PF08891 YfcL protein KC397_10750 PF04315 Elongation factor P hydroxylase KC397_10755 PF03458 UPF0126 domain KC397_10765 PF03466 LysR substrate binding domain KC397_10765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_10770 PF01264 Chorismate synthase KC397_10775 PF05175 Methyltransferase small domain KC397_10780 PF01713 Smr domain KC397_10785 PF01312 FlhB HrpN YscU SpaS Family KC397_10790 PF01311 Bacterial export proteins, family 1 KC397_10795 PF01313 Bacterial export proteins, family 3 KC397_10800 PF00813 FliP family KC397_10805 PF04347 Flagellar biosynthesis protein, FliO KC397_10810 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KC397_10815 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KC397_10815 PF02154 Flagellar motor switch protein FliM KC397_10835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KC397_10835 PF18269 T3SS EscN ATPase C-terminal domain KC397_10845 PF14841 FliG middle domain KC397_10845 PF14842 FliG N-terminal domain KC397_10845 PF01706 FliG C-terminal domain KC397_10850 PF01514 Secretory protein of YscJ/FliF family KC397_10850 PF08345 Flagellar M-ring protein C-terminal KC397_10855 PF02049 Flagellar hook-basal body complex protein FliE KC397_10860 PF00158 Sigma-54 interaction domain KC397_10860 PF00072 Response regulator receiver domain KC397_10860 PF02954 Bacterial regulatory protein, Fis family KC397_10865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_10865 PF00512 His Kinase A (phospho-acceptor) domain KC397_10865 PF13188 PAS domain KC397_10870 PF02954 Bacterial regulatory protein, Fis family KC397_10870 PF00158 Sigma-54 interaction domain KC397_10870 PF06490 Flagellar regulatory protein FleQ KC397_10875 PF02561 Flagellar protein FliS KC397_10885 PF07196 Flagellin hook IN motif KC397_10885 PF07195 Flagellar hook-associated protein 2 C-terminus KC397_10885 PF02465 Flagellar hook-associated protein 2 N-terminus KC397_10890 PF03646 FlaG protein KC397_10895 PF00700 Bacterial flagellin C-terminal helical region KC397_10895 PF07196 Flagellin hook IN motif KC397_10895 PF00669 Bacterial flagellin N-terminal helical region KC397_10900 PF00700 Bacterial flagellin C-terminal helical region KC397_10900 PF07196 Flagellin hook IN motif KC397_10900 PF00669 Bacterial flagellin N-terminal helical region KC397_10905 PF07196 Flagellin hook IN motif KC397_10905 PF00700 Bacterial flagellin C-terminal helical region KC397_10905 PF00669 Bacterial flagellin N-terminal helical region KC397_10910 PF04261 Dyp-type peroxidase family KC397_10915 PF11143 Protein of unknown function (DUF2919) KC397_10925 PF00356 Bacterial regulatory proteins, lacI family KC397_10930 PF08544 GHMP kinases C terminal KC397_10930 PF00288 GHMP kinases N terminal domain KC397_10930 PF10509 Galactokinase galactose-binding signature KC397_10935 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain KC397_10935 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain KC397_10940 PF16363 GDP-mannose 4,6 dehydratase KC397_10950 PF03960 ArsC family KC397_10955 PF07687 Peptidase dimerisation domain KC397_10955 PF01546 Peptidase family M20/M25/M40 KC397_10960 PF02557 D-alanyl-D-alanine carboxypeptidase KC397_10970 PF06804 NlpB/DapX lipoprotein KC397_10975 PF00701 Dihydrodipicolinate synthetase family KC397_10980 PF01842 ACT domain KC397_10985 PF00578 AhpC/TSA family KC397_10990 PF02743 Cache domain KC397_10990 PF00672 HAMP domain KC397_10990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_10995 PF01594 AI-2E family transporter KC397_11005 PF01435 Peptidase family M48 KC397_11005 PF13181 Tetratricopeptide repeat KC397_11010 PF03960 ArsC family KC397_11015 PF03358 NADPH-dependent FMN reductase KC397_11030 PF00860 Permease family KC397_11035 PF04073 Aminoacyl-tRNA editing domain KC397_11040 PF00149 Calcineurin-like phosphoesterase KC397_11040 PF02872 5'-nucleotidase, C-terminal domain KC397_11045 PF00793 DAHP synthetase I family KC397_11050 PF13369 Transglutaminase-like superfamily KC397_11055 PF04247 Invasion gene expression up-regulator, SirB KC397_11060 PF13847 Methyltransferase domain KC397_11060 PF17827 PrmC N-terminal domain KC397_11065 PF03462 PCRF domain KC397_11065 PF00472 RF-1 domain KC397_11070 PF01488 Shikimate / quinate 5-dehydrogenase KC397_11070 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KC397_11070 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KC397_11075 PF03550 Outer membrane lipoprotein LolB KC397_11080 PF08544 GHMP kinases C terminal KC397_11080 PF00288 GHMP kinases N terminal domain KC397_11085 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KC397_11085 PF14572 Phosphoribosyl synthetase-associated domain KC397_11090 PF01195 Peptidyl-tRNA hydrolase KC397_11095 PF06071 Protein of unknown function (DUF933) KC397_11095 PF01926 50S ribosome-binding GTPase KC397_11185 PF00669 Bacterial flagellin N-terminal helical region KC397_11185 PF07196 Flagellin hook IN motif KC397_11185 PF00700 Bacterial flagellin C-terminal helical region KC397_11190 PF00700 Bacterial flagellin C-terminal helical region KC397_11190 PF00669 Bacterial flagellin N-terminal helical region KC397_11190 PF07196 Flagellin hook IN motif KC397_11200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KC397_11200 PF07196 Flagellin hook IN motif KC397_11205 PF10135 Rod binding protein KC397_11205 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KC397_11210 PF02119 Flagellar P-ring protein KC397_11215 PF02107 Flagellar L-ring protein KC397_11220 PF00460 Flagella basal body rod protein KC397_11220 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KC397_11225 PF00460 Flagella basal body rod protein KC397_11225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KC397_11230 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KC397_11230 PF07559 Flagellar basal body protein FlaE KC397_11230 PF00460 Flagella basal body rod protein KC397_11235 PF13860 FlgD Ig-like domain KC397_11235 PF13861 FlgD Tudor-like domain KC397_11235 PF03963 Flagellar hook capping protein - N-terminal region KC397_11240 PF00460 Flagella basal body rod protein KC397_11240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KC397_11245 PF00460 Flagella basal body rod protein KC397_11250 PF01739 CheR methyltransferase, SAM binding domain KC397_11250 PF03705 CheR methyltransferase, all-alpha domain KC397_11255 PF00072 Response regulator receiver domain KC397_11255 PF01584 CheW-like domain KC397_11265 PF04316 Anti-sigma-28 factor, FlgM KC397_11325 PF05840 Bacteriophage replication gene A protein (GPA) KC397_11370 PF02899 Phage integrase, N-terminal SAM-like domain KC397_11370 PF00589 Phage integrase family KC397_11385 PF08019 Phosphoethanolamine transferase EptA/EptB KC397_11385 PF00884 Sulfatase KC397_11390 PF01219 Prokaryotic diacylglycerol kinase KC397_11405 PF00691 OmpA family KC397_11405 PF01389 OmpA-like transmembrane domain KC397_11410 PF00749 tRNA synthetases class I (E and Q), catalytic domain KC397_11415 PF00403 Heavy-metal-associated domain KC397_11425 PF02838 Glycosyl hydrolase family 20, domain 2 KC397_11425 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain KC397_11425 PF00728 Glycosyl hydrolase family 20, catalytic domain KC397_11425 PF03173 Putative carbohydrate binding domain KC397_11445 PF01713 Smr domain KC397_11450 PF00849 RNA pseudouridylate synthase KC397_11450 PF01479 S4 domain KC397_11460 PF00586 AIR synthase related protein, N-terminal domain KC397_11460 PF02769 AIR synthase related protein, C-terminal domain KC397_11465 PF00551 Formyl transferase KC397_11470 PF13230 Glutamine amidotransferases class-II KC397_11475 PF13580 SIS domain KC397_11480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KC397_11480 PF02770 Acyl-CoA dehydrogenase, middle domain KC397_11480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KC397_11480 PF09317 Domain of unknown function (DUF1974) KC397_11490 PF00929 Exonuclease KC397_11495 PF00075 RNase H KC397_11500 PF08241 Methyltransferase domain KC397_11505 PF00753 Metallo-beta-lactamase superfamily KC397_11505 PF16123 Hydroxyacylglutathione hydrolase C-terminus KC397_11510 PF01476 LysM domain KC397_11510 PF01464 Transglycosylase SLT domain KC397_11520 PF03372 Endonuclease/Exonuclease/phosphatase family KC397_11525 PF00543 Nitrogen regulatory protein P-II KC397_11530 PF00034 Cytochrome c KC397_11535 PF09179 TilS substrate binding domain KC397_11535 PF01171 PP-loop family KC397_11535 PF11734 TilS substrate C-terminal domain KC397_11540 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KC397_11545 PF07733 Bacterial DNA polymerase III alpha NTPase domain KC397_11545 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KC397_11545 PF14579 Helix-hairpin-helix motif KC397_11545 PF02811 PHP domain KC397_11545 PF01336 OB-fold nucleic acid binding domain KC397_11550 PF01351 Ribonuclease HII KC397_11555 PF02684 Lipid-A-disaccharide synthetase KC397_11560 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KC397_11560 PF00132 Bacterial transferase hexapeptide (six repeats) KC397_11565 PF07977 FabA-like domain KC397_11570 PF00132 Bacterial transferase hexapeptide (six repeats) KC397_11570 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KC397_11575 PF03938 Outer membrane protein (OmpH-like) KC397_11580 PF01103 Surface antigen KC397_11580 PF07244 Surface antigen variable number repeat KC397_11585 PF02163 Peptidase family M50 KC397_11585 PF17820 PDZ domain KC397_11590 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KC397_11590 PF13288 DXP reductoisomerase C-terminal domain KC397_11590 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KC397_11600 PF01255 Putative undecaprenyl diphosphate synthase KC397_11605 PF01765 Ribosome recycling factor KC397_11610 PF00696 Amino acid kinase family KC397_11615 PF00889 Elongation factor TS KC397_11620 PF00318 Ribosomal protein S2 KC397_11625 PF00557 Metallopeptidase family M24 KC397_11630 PF08335 GlnD PII-uridylyltransferase KC397_11630 PF01966 HD domain KC397_11630 PF01909 Nucleotidyltransferase domain KC397_11635 PF11944 Protein of unknown function (DUF3461) KC397_11640 PF04608 Phosphatidylglycerophosphatase A KC397_11645 PF00586 AIR synthase related protein, N-terminal domain KC397_11645 PF02769 AIR synthase related protein, C-terminal domain KC397_11650 PF01029 NusB family KC397_11655 PF00885 6,7-dimethyl-8-ribityllumazine synthase KC397_11660 PF00925 GTP cyclohydrolase II KC397_11660 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KC397_11665 PF00677 Lumazine binding domain KC397_11670 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KC397_11670 PF01872 RibD C-terminal domain KC397_11675 PF03477 ATP cone domain KC397_11680 PF00171 Aldehyde dehydrogenase family KC397_11685 PF00696 Amino acid kinase family KC397_11685 PF01472 PUA domain KC397_11690 PF07417 Sigma factor-binding transcriptional regulator Crl KC397_11695 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) KC397_11700 PF00156 Phosphoribosyl transferase domain KC397_11705 PF00860 Permease family KC397_11710 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KC397_11720 PF03480 Bacterial extracellular solute-binding protein, family 7 KC397_11725 PF00171 Aldehyde dehydrogenase family KC397_11730 PF00202 Aminotransferase class-III KC397_11735 PF00392 Bacterial regulatory proteins, gntR family KC397_11735 PF00155 Aminotransferase class I and II KC397_11740 PF01546 Peptidase family M20/M25/M40 KC397_11740 PF07687 Peptidase dimerisation domain KC397_11745 PF18030 RimK PreATP-grasp domain KC397_11745 PF08443 RimK-like ATP-grasp domain KC397_11750 PF08443 RimK-like ATP-grasp domain KC397_11750 PF18030 RimK PreATP-grasp domain KC397_11760 PF00209 Sodium:neurotransmitter symporter family KC397_11765 PF00563 EAL domain KC397_11765 PF01590 GAF domain KC397_11765 PF00360 Phytochrome region KC397_11765 PF00990 Diguanylate cyclase, GGDEF domain KC397_11775 PF11799 impB/mucB/samB family C-terminal domain KC397_11775 PF00817 impB/mucB/samB family KC397_11775 PF11798 IMS family HHH motif KC397_11790 PF02424 ApbE family KC397_11795 PF00970 Oxidoreductase FAD-binding domain KC397_11795 PF00111 2Fe-2S iron-sulfur cluster binding domain KC397_11795 PF00175 Oxidoreductase NAD-binding domain KC397_11800 PF02508 Rnf-Nqr subunit, membrane protein KC397_11805 PF02508 Rnf-Nqr subunit, membrane protein KC397_11810 PF04205 FMN-binding domain KC397_11815 PF03116 NQR2, RnfD, RnfE family KC397_11820 PF11973 NQRA C-terminal domain KC397_11820 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) KC397_11825 PF01722 BolA-like protein KC397_11830 PF05175 Methyltransferase small domain KC397_11840 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KC397_11845 PF07690 Major Facilitator Superfamily KC397_11850 PF00881 Nitroreductase family KC397_11860 PF01738 Dienelactone hydrolase family KC397_11895 PF01979 Amidohydrolase family KC397_11905 PF00005 ABC transporter KC397_11910 PF00528 Binding-protein-dependent transport system inner membrane component KC397_11915 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KC397_11925 PF00004 ATPase family associated with various cellular activities (AAA) KC397_11925 PF07724 AAA domain (Cdc48 subfamily) KC397_11925 PF17871 AAA lid domain KC397_11925 PF02861 Clp amino terminal domain, pathogenicity island component KC397_11925 PF10431 C-terminal, D2-small domain, of ClpB protein KC397_11930 PF02578 Multi-copper polyphenol oxidoreductase laccase KC397_11935 PF01479 S4 domain KC397_11935 PF00849 RNA pseudouridylate synthase KC397_11940 PF13525 Outer membrane lipoprotein KC397_11945 PF00497 Bacterial extracellular solute-binding proteins, family 3 KC397_11945 PF01464 Transglycosylase SLT domain KC397_11950 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KC397_11955 PF00800 Prephenate dehydratase KC397_11955 PF01817 Chorismate mutase type II KC397_11960 PF13416 Bacterial extracellular solute-binding protein KC397_11965 PF00563 EAL domain KC397_11965 PF00990 Diguanylate cyclase, GGDEF domain KC397_11970 PF01931 Protein of unknown function DUF84 KC397_11975 PF01371 Trp repressor protein KC397_11980 PF01464 Transglycosylase SLT domain KC397_11980 PF14718 Soluble lytic murein transglycosylase L domain KC397_11985 PF12848 ABC transporter KC397_11985 PF00005 ABC transporter KC397_11990 PF07238 PilZ domain KC397_11995 PF01817 Chorismate mutase type II KC397_11995 PF02153 Prephenate dehydrogenase KC397_12000 PF00793 DAHP synthetase I family KC397_12005 PF07694 5TMR of 5TMR-LYT KC397_12005 PF06580 Histidine kinase KC397_12010 PF04397 LytTr DNA-binding domain KC397_12010 PF00072 Response regulator receiver domain KC397_12015 PF00933 Glycosyl hydrolase family 3 N terminal domain KC397_12020 PF03702 Anhydro-N-acetylmuramic acid kinase KC397_12025 PF13580 SIS domain KC397_12040 PF02554 Carbon starvation protein CstA KC397_12045 PF02401 LytB protein KC397_12050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KC397_12055 PF01252 Signal peptidase (SPase) II KC397_12060 PF08264 Anticodon-binding domain of tRNA KC397_12060 PF06827 Zinc finger found in FPG and IleRS KC397_12060 PF00133 tRNA synthetases class I (I, L, M and V) KC397_12065 PF06574 FAD synthetase KC397_12065 PF01687 Riboflavin kinase KC397_12070 PF03023 Lipid II flippase MurJ KC397_12075 PF01649 Ribosomal protein S20 KC397_12080 PF01022 Bacterial regulatory protein, arsR family KC397_12085 PF03466 LysR substrate binding domain KC397_12085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_12090 PF02690 Na+/Pi-cotransporter KC397_12095 PF00303 Thymidylate synthase KC397_12100 PF01790 Prolipoprotein diacylglyceryl transferase KC397_12105 PF01925 Sulfite exporter TauE/SafE KC397_12110 PF00391 PEP-utilising enzyme, mobile domain KC397_12110 PF02896 PEP-utilising enzyme, TIM barrel domain KC397_12110 PF01590 GAF domain KC397_12110 PF05524 PEP-utilising enzyme, N-terminal KC397_12115 PF00293 NUDIX domain KC397_12120 PF02976 DNA mismatch repair enzyme MutH KC397_12130 PF00248 Aldo/keto reductase family KC397_12140 PF02954 Bacterial regulatory protein, Fis family KC397_12140 PF00072 Response regulator receiver domain KC397_12140 PF00158 Sigma-54 interaction domain KC397_12145 PF00152 tRNA synthetases class II (D, K and N) KC397_12145 PF01336 OB-fold nucleic acid binding domain KC397_12155 PF05525 Branched-chain amino acid transport protein KC397_12160 PF05175 Methyltransferase small domain KC397_12165 PF00270 DEAD/DEAH box helicase KC397_12165 PF00271 Helicase conserved C-terminal domain KC397_12170 PF00009 Elongation factor Tu GTP binding domain KC397_12170 PF03144 Elongation factor Tu domain 2 KC397_12170 PF16658 Class II release factor RF3, C-terminal domain KC397_12175 PF00563 EAL domain KC397_12175 PF00990 Diguanylate cyclase, GGDEF domain KC397_12175 PF03707 Bacterial signalling protein N terminal repeat KC397_12180 PF00583 Acetyltransferase (GNAT) family KC397_12190 PF13508 Acetyltransferase (GNAT) domain KC397_12195 PF02036 SCP-2 sterol transfer family KC397_12200 PF03707 Bacterial signalling protein N terminal repeat KC397_12200 PF00990 Diguanylate cyclase, GGDEF domain KC397_12200 PF00563 EAL domain KC397_12205 PF01136 Peptidase family U32 KC397_12210 PF01136 Peptidase family U32 KC397_12215 PF01554 MatE KC397_12225 PF07719 Tetratricopeptide repeat KC397_12225 PF13181 Tetratricopeptide repeat KC397_12230 PF01138 3' exoribonuclease family, domain 1 KC397_12230 PF00013 KH domain KC397_12230 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KC397_12230 PF00575 S1 RNA binding domain KC397_12230 PF03725 3' exoribonuclease family, domain 2 KC397_12235 PF00312 Ribosomal protein S15 KC397_12240 PF01509 TruB family pseudouridylate synthase (N terminal domain) KC397_12240 PF16198 tRNA pseudouridylate synthase B C-terminal domain KC397_12240 PF09157 Pseudouridine synthase II TruB, C-terminal KC397_12245 PF02033 Ribosome-binding factor A KC397_12250 PF00009 Elongation factor Tu GTP binding domain KC397_12250 PF11987 Translation-initiation factor 2 KC397_12250 PF08364 Bacterial translation initiation factor IF-2 associated region KC397_12250 PF04760 Translation initiation factor IF-2, N-terminal region KC397_12255 PF13184 NusA-like KH domain KC397_12255 PF08529 NusA N-terminal domain KC397_12255 PF00575 S1 RNA binding domain KC397_12260 PF02576 RimP N-terminal domain KC397_12260 PF17384 RimP C-terminal SH3 domain KC397_12275 PF03840 Preprotein translocase SecG subunit KC397_12280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KC397_12280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KC397_12280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KC397_12280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KC397_12285 PF00809 Pterin binding enzyme KC397_12290 PF00004 ATPase family associated with various cellular activities (AAA) KC397_12290 PF17862 AAA+ lid domain KC397_12290 PF06480 FtsH Extracellular KC397_12290 PF01434 Peptidase family M41 KC397_12295 PF01728 FtsJ-like methyltransferase KC397_12300 PF01985 CRS1 / YhbY (CRM) domain KC397_12305 PF01272 Transcription elongation factor, GreA/GreB, C-term KC397_12305 PF03449 Transcription elongation factor, N-terminal KC397_12310 PF13609 Gram-negative porin KC397_12315 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family KC397_12320 PF00571 CBS domain KC397_12320 PF03448 MgtE intracellular N domain KC397_12320 PF01769 Divalent cation transporter KC397_12330 PF01479 S4 domain KC397_12330 PF00579 tRNA synthetases class I (W and Y) KC397_12335 PF01551 Peptidase family M23 KC397_12335 PF04225 Opacity-associated protein A LysM-like domain KC397_12340 PF00873 AcrB/AcrD/AcrF family KC397_12350 PF01521 Iron-sulphur cluster biosynthesis KC397_12355 PF00202 Aminotransferase class-III KC397_12365 PF01594 AI-2E family transporter KC397_12370 PF08468 Methyltransferase small domain N-terminal KC397_12370 PF05175 Methyltransferase small domain KC397_12375 PF09308 LuxQ, periplasmic KC397_12375 PF00072 Response regulator receiver domain KC397_12375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_12375 PF00512 His Kinase A (phospho-acceptor) domain KC397_12380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KC397_12385 PF00528 Binding-protein-dependent transport system inner membrane component KC397_12390 PF12911 N-terminal TM domain of oligopeptide transport permease C KC397_12390 PF00528 Binding-protein-dependent transport system inner membrane component KC397_12395 PF00005 ABC transporter KC397_12395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KC397_12400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KC397_12400 PF00005 ABC transporter KC397_12410 PF01869 BadF/BadG/BcrA/BcrD ATPase family KC397_12415 PF00728 Glycosyl hydrolase family 20, catalytic domain KC397_12415 PF02838 Glycosyl hydrolase family 20, domain 2 KC397_12420 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain KC397_12420 PF06165 Glycosyltransferase family 36 KC397_12425 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KC397_12425 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KC397_12425 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KC397_12425 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KC397_12430 PF08402 TOBE domain KC397_12430 PF00005 ABC transporter KC397_12440 PF13416 Bacterial extracellular solute-binding protein KC397_12445 PF00909 Ammonium Transporter Family KC397_12450 PF00543 Nitrogen regulatory protein P-II KC397_12455 PF06062 Uncharacterised protein family (UPF0231) KC397_12460 PF00330 Aconitase family (aconitate hydratase) KC397_12460 PF06434 Aconitate hydratase 2 N-terminus KC397_12460 PF11791 Aconitate B N-terminal domain KC397_12465 PF01734 Patatin-like phospholipase KC397_12470 PF00912 Transglycosylase KC397_12470 PF00905 Penicillin binding protein transpeptidase domain KC397_12470 PF14814 Bifunctional transglycosylase second domain KC397_12475 PF00270 DEAD/DEAH box helicase KC397_12475 PF04408 Helicase associated domain (HA2) KC397_12475 PF00271 Helicase conserved C-terminal domain KC397_12475 PF08482 ATP-dependent helicase C-terminal KC397_12480 PF17746 SfsA N-terminal OB domain KC397_12480 PF03749 Sugar fermentation stimulation protein RE domain KC397_12485 PF01258 Prokaryotic dksA/traR C4-type zinc finger KC397_12490 PF00749 tRNA synthetases class I (E and Q), catalytic domain KC397_12495 PF12627 Probable RNA and SrmB- binding site of polymerase A KC397_12495 PF01743 Poly A polymerase head domain KC397_12495 PF12626 Polymerase A arginine-rich C-terminus KC397_12500 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KC397_12505 PF02548 Ketopantoate hydroxymethyltransferase KC397_12510 PF02569 Pantoate-beta-alanine ligase KC397_12515 PF01061 ABC-2 type transporter KC397_12520 PF00005 ABC transporter KC397_12525 PF00484 Carbonic anhydrase KC397_12530 PF00156 Phosphoribosyl transferase domain KC397_12535 PF00440 Bacterial regulatory proteins, tetR family KC397_12540 PF07992 Pyridine nucleotide-disulphide oxidoreductase KC397_12540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KC397_12545 PF00364 Biotin-requiring enzyme KC397_12545 PF02817 e3 binding domain KC397_12545 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KC397_12550 PF17831 Pyruvate dehydrogenase E1 component middle domain KC397_12550 PF00456 Transketolase, thiamine diphosphate binding domain KC397_12555 PF07729 FCD domain KC397_12555 PF00392 Bacterial regulatory proteins, gntR family KC397_12560 PF01368 DHH family KC397_12560 PF02272 DHHA1 domain KC397_12560 PF17768 RecJ OB domain KC397_12565 PF10411 Disulfide bond isomerase protein N-terminus KC397_12565 PF13098 Thioredoxin-like domain KC397_12570 PF02899 Phage integrase, N-terminal SAM-like domain KC397_12570 PF00589 Phage integrase family KC397_12575 PF00258 Flavodoxin KC397_12580 PF01510 N-acetylmuramoyl-L-alanine amidase KC397_12585 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KC397_12585 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KC397_12590 PF00114 Pilin (bacterial filament) KC397_12590 PF07963 Prokaryotic N-terminal methylation motif KC397_12595 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KC397_12595 PF00437 Type II/IV secretion system protein KC397_12600 PF00482 Type II secretion system (T2SS), protein F KC397_12605 PF06750 Bacterial Peptidase A24 N-terminal domain KC397_12605 PF01478 Type IV leader peptidase family KC397_12610 PF01121 Dephospho-CoA kinase KC397_12615 PF07072 Cell division protein KC397_12620 PF03884 DNA gyrase inhibitor YacG KC397_12625 PF03989 DNA gyrase C-terminal domain, beta-propeller KC397_12625 PF00521 DNA gyrase/topoisomerase IV, subunit A KC397_12630 PF00204 DNA gyrase B KC397_12630 PF01751 Toprim domain KC397_12630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_12630 PF00986 DNA gyrase B subunit, carboxyl terminus KC397_12635 PF05728 Uncharacterised protein family (UPF0227) KC397_12640 PF00149 Calcineurin-like phosphoesterase KC397_12645 PF06853 Protein of unknown function (DUF1249) KC397_12650 PF00293 NUDIX domain KC397_12655 PF02321 Outer membrane efflux protein KC397_12660 PF00294 pfkB family carbohydrate kinase KC397_12660 PF01467 Cytidylyltransferase-like KC397_12665 PF03710 Glutamate-ammonia ligase adenylyltransferase KC397_12665 PF08335 GlnD PII-uridylyltransferase KC397_12670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_12670 PF00672 HAMP domain KC397_12675 PF00027 Cyclic nucleotide-binding domain KC397_12675 PF00520 Ion transport protein KC397_12680 PF01928 CYTH domain KC397_12685 PF01865 Protein of unknown function DUF47 KC397_12690 PF01384 Phosphate transporter family KC397_12695 PF08239 Bacterial SH3 domain KC397_12705 PF13401 AAA domain KC397_12705 PF01471 Putative peptidoglycan binding domain KC397_12710 PF01966 HD domain KC397_12710 PF01743 Poly A polymerase head domain KC397_12710 PF12627 Probable RNA and SrmB- binding site of polymerase A KC397_12715 PF00113 Enolase, C-terminal TIM barrel domain KC397_12715 PF03952 Enolase, N-terminal domain KC397_12720 PF00117 Glutamine amidotransferase class-I KC397_12720 PF06418 CTP synthase N-terminus KC397_12725 PF03819 MazG nucleotide pyrophosphohydrolase domain KC397_12730 PF13291 ACT domain KC397_12730 PF04607 Region found in RelA / SpoT proteins KC397_12730 PF02824 TGS domain KC397_12735 PF01938 TRAM domain KC397_12735 PF05958 tRNA (Uracil-5-)-methyltransferase KC397_12740 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KC397_12740 PF00072 Response regulator receiver domain KC397_12740 PF01627 Hpt domain KC397_12740 PF00512 His Kinase A (phospho-acceptor) domain KC397_12740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_12740 PF00672 HAMP domain KC397_12745 PF01648 4'-phosphopantetheinyl transferase superfamily KC397_12750 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KC397_12755 PF02565 Recombination protein O C terminal KC397_12755 PF11967 Recombination protein O N terminal KC397_12760 PF07650 KH domain KC397_12760 PF01926 50S ribosome-binding GTPase KC397_12765 PF00035 Double-stranded RNA binding motif KC397_12765 PF14622 Ribonuclease-III-like KC397_12770 PF10502 Signal peptidase, peptidase S26 KC397_12775 PF00009 Elongation factor Tu GTP binding domain KC397_12775 PF00679 Elongation factor G C-terminus KC397_12775 PF06421 GTP-binding protein LepA C-terminus KC397_12775 PF03144 Elongation factor Tu domain 2 KC397_12785 PF17188 MucB/RseB C-terminal domain KC397_12785 PF03888 MucB/RseB N-terminal domain KC397_12790 PF03872 Anti sigma-E protein RseA, N-terminal domain KC397_12790 PF03873 Anti sigma-E protein RseA, C-terminal domain KC397_12795 PF08281 Sigma-70, region 4 KC397_12795 PF04542 Sigma-70 region 2 KC397_12800 PF00890 FAD binding domain KC397_12800 PF02910 Fumarate reductase flavoprotein C-term KC397_12810 PF03937 Flavinator of succinate dehydrogenase KC397_12820 PF03129 Anticodon binding domain KC397_12820 PF04073 Aminoacyl-tRNA editing domain KC397_12820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KC397_12830 PF01494 FAD binding domain KC397_12835 PF01494 FAD binding domain KC397_12840 PF03695 Uncharacterised protein family (UPF0149) KC397_12845 PF05164 Cell division protein ZapA KC397_12855 PF01812 5-formyltetrahydrofolate cyclo-ligase family KC397_12860 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KC397_12865 PF01842 ACT domain KC397_12865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KC397_12865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KC397_12870 PF10369 Small subunit of acetolactate synthase KC397_12875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KC397_12875 PF00205 Thiamine pyrophosphate enzyme, central domain KC397_12875 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KC397_12880 PF00501 AMP-binding enzyme KC397_12885 PF03466 LysR substrate binding domain KC397_12885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_12895 PF01569 PAP2 superfamily KC397_12905 PF08502 LeuA allosteric (dimerisation) domain KC397_12905 PF00682 HMGL-like KC397_12910 PF00180 Isocitrate/isopropylmalate dehydrogenase KC397_12915 PF00330 Aconitase family (aconitate hydratase) KC397_12920 PF00694 Aconitase C-terminal domain KC397_12965 PF00072 Response regulator receiver domain KC397_12975 PF00563 EAL domain KC397_12975 PF01590 GAF domain KC397_12975 PF00990 Diguanylate cyclase, GGDEF domain KC397_12975 PF00989 PAS fold KC397_13000 PF02384 N-6 DNA Methylase KC397_13000 PF12161 HsdM N-terminal domain KC397_13005 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) KC397_13005 PF00271 Helicase conserved C-terminal domain KC397_13005 PF08463 EcoEI R protein C-terminal KC397_13005 PF04851 Type III restriction enzyme, res subunit KC397_13050 PF00816 H-NS histone family KC397_13055 PF00990 Diguanylate cyclase, GGDEF domain KC397_13055 PF00072 Response regulator receiver domain KC397_13095 PF04399 Glutaredoxin 2, C terminal domain KC397_13095 PF13417 Glutathione S-transferase, N-terminal domain KC397_13100 PF00107 Zinc-binding dehydrogenase KC397_13100 PF08240 Alcohol dehydrogenase GroES-like domain KC397_13230 PF00990 Diguanylate cyclase, GGDEF domain KC397_13240 PF03739 Lipopolysaccharide export system permease LptF/LptG KC397_13245 PF03739 Lipopolysaccharide export system permease LptF/LptG KC397_13250 PF00883 Cytosol aminopeptidase family, catalytic domain KC397_13250 PF02789 Cytosol aminopeptidase family, N-terminal domain KC397_13260 PF10458 Valyl tRNA synthetase tRNA binding arm KC397_13260 PF00133 tRNA synthetases class I (I, L, M and V) KC397_13260 PF08264 Anticodon-binding domain of tRNA KC397_13265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KC397_13265 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KC397_13270 PF00849 RNA pseudouridylate synthase KC397_13280 PF12137 RNA polymerase recycling family C-terminal KC397_13280 PF00271 Helicase conserved C-terminal domain KC397_13280 PF00176 SNF2 family N-terminal domain KC397_13280 PF18339 RapA N-terminal Tudor like domain 1 KC397_13280 PF18337 RapA N-terminal Tudor like domain KC397_13285 PF13638 PIN domain KC397_13285 PF02562 PhoH-like protein KC397_13290 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KC397_13290 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KC397_13295 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KC397_13295 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KC397_13300 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain KC397_13300 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain KC397_13305 PF01042 Endoribonuclease L-PSP KC397_13310 PF01553 Acyltransferase KC397_13315 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KC397_13320 PF01722 BolA-like protein KC397_13325 PF13466 STAS domain KC397_13330 PF05494 MlaC protein KC397_13335 PF02470 MlaD protein KC397_13340 PF02405 Permease MlaE KC397_13345 PF00005 ABC transporter KC397_13350 PF01699 Sodium/calcium exchanger protein KC397_13355 PF00571 CBS domain KC397_13355 PF01380 SIS domain KC397_13370 PF03968 OstA-like protein KC397_13375 PF12399 Branched-chain amino acid ATP-binding cassette transporter KC397_13375 PF00005 ABC transporter KC397_13380 PF04552 Sigma-54, DNA binding domain KC397_13380 PF04963 Sigma-54 factor, core binding domain KC397_13380 PF00309 Sigma-54 factor, Activator interacting domain (AID) KC397_13385 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KC397_13390 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KC397_13395 PF03668 P-loop ATPase protein family KC397_13400 PF00381 PTS HPr component phosphorylation site KC397_13405 PF03448 MgtE intracellular N domain KC397_13405 PF01769 Divalent cation transporter KC397_13405 PF00571 CBS domain KC397_13410 PF01523 Putative modulator of DNA gyrase KC397_13415 PF04751 Protein of unknown function (DUF615) KC397_13420 PF00005 ABC transporter KC397_13425 PF00528 Binding-protein-dependent transport system inner membrane component KC397_13435 PF02441 Flavoprotein KC397_13440 PF01225 Mur ligase family, catalytic domain KC397_13440 PF08245 Mur ligase middle domain KC397_13440 PF02875 Mur ligase family, glutamate ligase domain KC397_13445 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KC397_13450 PF00719 Inorganic pyrophosphatase KC397_13455 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like KC397_13460 PF04357 TamB, inner membrane protein subunit of TAM complex KC397_13465 PF01103 Surface antigen KC397_13465 PF17243 POTRA domain TamA domain 1 KC397_13465 PF07244 Surface antigen variable number repeat KC397_13470 PF01625 Peptide methionine sulfoxide reductase KC397_13475 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) KC397_13480 PF10795 Protein of unknown function (DUF2607) KC397_13490 PF02687 FtsX-like permease family KC397_13490 PF12704 MacB-like periplasmic core domain KC397_13490 PF00005 ABC transporter KC397_13515 PF03600 Citrate transporter KC397_13515 PF02080 TrkA-C domain KC397_13520 PF00009 Elongation factor Tu GTP binding domain KC397_13525 PF01507 Phosphoadenosine phosphosulfate reductase family KC397_13530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KC397_13530 PF10414 Sirohaem synthase dimerisation region KC397_13530 PF14824 Sirohaem biosynthesis protein central KC397_13535 PF00149 Calcineurin-like phosphoesterase KC397_13535 PF02872 5'-nucleotidase, C-terminal domain KC397_13545 PF00271 Helicase conserved C-terminal domain KC397_13545 PF00270 DEAD/DEAH box helicase KC397_13545 PF03880 DbpA RNA binding domain KC397_13550 PF13673 Acetyltransferase (GNAT) domain KC397_13555 PF00892 EamA-like transporter family KC397_13560 PF04225 Opacity-associated protein A LysM-like domain KC397_13560 PF08525 Opacity-associated protein A N-terminal motif KC397_13565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KC397_13565 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KC397_13575 PF01196 Ribosomal protein L17 KC397_13580 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KC397_13580 PF01000 RNA polymerase Rpb3/RpoA insert domain KC397_13580 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KC397_13585 PF00163 Ribosomal protein S4/S9 N-terminal domain KC397_13585 PF01479 S4 domain KC397_13590 PF00411 Ribosomal protein S11 KC397_13595 PF00416 Ribosomal protein S13/S18 KC397_13600 PF00444 Ribosomal protein L36 KC397_13605 PF00344 SecY translocase KC397_13610 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KC397_13615 PF00327 Ribosomal protein L30p/L7e KC397_13620 PF03719 Ribosomal protein S5, C-terminal domain KC397_13620 PF00333 Ribosomal protein S5, N-terminal domain KC397_13625 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KC397_13630 PF00347 Ribosomal protein L6 KC397_13635 PF00410 Ribosomal protein S8 KC397_13640 PF00253 Ribosomal protein S14p/S29e KC397_13645 PF00281 Ribosomal protein L5 KC397_13645 PF00673 ribosomal L5P family C-terminus KC397_13650 PF00467 KOW motif KC397_13650 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KC397_13655 PF00238 Ribosomal protein L14p/L23e KC397_13660 PF00366 Ribosomal protein S17 KC397_13665 PF00831 Ribosomal L29 protein KC397_13670 PF00252 Ribosomal protein L16p/L10e KC397_13675 PF07650 KH domain KC397_13675 PF00189 Ribosomal protein S3, C-terminal domain KC397_13680 PF00237 Ribosomal protein L22p/L17e KC397_13685 PF00203 Ribosomal protein S19 KC397_13690 PF03947 Ribosomal Proteins L2, C-terminal domain KC397_13690 PF00181 Ribosomal Proteins L2, RNA binding domain KC397_13695 PF00276 Ribosomal protein L23 KC397_13700 PF00573 Ribosomal protein L4/L1 family KC397_13705 PF00297 Ribosomal protein L3 KC397_13710 PF00338 Ribosomal protein S10p/S20e KC397_13715 PF00588 SpoU rRNA Methylase family KC397_13715 PF08032 RNA 2'-O ribose methyltransferase substrate binding KC397_13720 PF00575 S1 RNA binding domain KC397_13720 PF17876 Cold shock domain KC397_13720 PF08461 Ribonuclease R winged-helix domain KC397_13720 PF08206 Ribonuclease B OB domain KC397_13720 PF00773 RNB domain KC397_13725 PF11893 Domain of unknown function (DUF3413) KC397_13725 PF00884 Sulfatase KC397_13730 PF08238 Sel1 repeat KC397_13735 PF00709 Adenylosuccinate synthetase KC397_13740 PF01112 Asparaginase KC397_13745 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KC397_13750 PF09526 Probable metal-binding protein (DUF2387) KC397_13755 PF00999 Sodium/hydrogen exchanger family KC397_13755 PF02254 TrkA-N domain KC397_13760 PF02525 Flavodoxin-like fold KC397_13765 PF12848 ABC transporter KC397_13765 PF00005 ABC transporter KC397_13775 PF00561 alpha/beta hydrolase fold KC397_13780 PF06794 Uncharacterised protein family (UPF0270) KC397_13785 PF00485 Phosphoribulokinase / Uridine kinase family KC397_13790 PF00027 Cyclic nucleotide-binding domain KC397_13790 PF13545 Crp-like helix-turn-helix domain KC397_13800 PF00171 Aldehyde dehydrogenase family KC397_13805 PF04958 Arginine N-succinyltransferase beta subunit KC397_13810 PF00202 Aminotransferase class-III KC397_13815 PF00117 Glutamine amidotransferase class-I KC397_13820 PF07992 Pyridine nucleotide-disulphide oxidoreductase KC397_13830 PF00579 tRNA synthetases class I (W and Y) KC397_13835 PF13419 Haloacid dehalogenase-like hydrolase KC397_13840 PF00834 Ribulose-phosphate 3 epimerase family KC397_13845 PF02086 D12 class N6 adenine-specific DNA methyltransferase KC397_13855 PF01761 3-dehydroquinate synthase KC397_13860 PF01202 Shikimate kinase KC397_13865 PF11741 AMIN domain KC397_13865 PF00263 Bacterial type II and III secretion system protein KC397_13865 PF03958 Bacterial type II/III secretion system short domain KC397_13865 PF07660 Secretin and TonB N terminus short domain KC397_13870 PF04351 Pilus assembly protein, PilP KC397_13890 PF17092 Penicillin-binding protein OB-like domain KC397_13890 PF00912 Transglycosylase KC397_13890 PF00905 Penicillin binding protein transpeptidase domain KC397_13895 PF03466 LysR substrate binding domain KC397_13895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_13900 PF08534 Redoxin KC397_13900 PF00462 Glutaredoxin KC397_13910 PF00206 Lyase KC397_13910 PF14698 Argininosuccinate lyase C-terminal KC397_13910 PF00583 Acetyltransferase (GNAT) family KC397_13915 PF00764 Arginosuccinate synthase KC397_13920 PF00696 Amino acid kinase family KC397_13925 PF01118 Semialdehyde dehydrogenase, NAD binding domain KC397_13925 PF02774 Semialdehyde dehydrogenase, dimerisation domain KC397_13930 PF07687 Peptidase dimerisation domain KC397_13930 PF01546 Peptidase family M20/M25/M40 KC397_13935 PF00311 Phosphoenolpyruvate carboxylase KC397_13940 PF03551 Transcriptional regulator PadR-like family KC397_13940 PF10400 Virulence activator alpha C-term KC397_13945 PF00132 Bacterial transferase hexapeptide (six repeats) KC397_13945 PF06426 Serine acetyltransferase, N-terminal KC397_13950 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KC397_13950 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KC397_13955 PF02556 Preprotein translocase subunit SecB KC397_13960 PF00581 Rhodanese-like domain KC397_13965 PF00152 tRNA synthetases class II (D, K and N) KC397_13970 PF02910 Fumarate reductase flavoprotein C-term KC397_13970 PF00890 FAD binding domain KC397_13975 PF13085 2Fe-2S iron-sulfur cluster binding domain KC397_13975 PF13183 4Fe-4S dicluster domain KC397_13980 PF02300 Fumarate reductase subunit C KC397_13985 PF02313 Fumarate reductase subunit D KC397_13990 PF08207 Elongation factor P (EF-P) KOW-like domain KC397_13990 PF01132 Elongation factor P (EF-P) OB domain KC397_13990 PF09285 Elongation factor P, C-terminal KC397_13995 PF04055 Radical SAM superfamily KC397_14000 PF02308 MgtC family KC397_14010 PF00005 ABC transporter KC397_14020 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KC397_14025 PF00118 TCP-1/cpn60 chaperonin family KC397_14030 PF00166 Chaperonin 10 Kd subunit KC397_14055 PF00121 Triosephosphate isomerase KC397_14060 PF01554 MatE KC397_14065 PF03737 Aldolase/RraA KC397_14070 PF01040 UbiA prenyltransferase family KC397_14075 PF00004 ATPase family associated with various cellular activities (AAA) KC397_14075 PF07724 AAA domain (Cdc48 subfamily) KC397_14075 PF10431 C-terminal, D2-small domain, of ClpB protein KC397_14080 PF00227 Proteasome subunit KC397_14090 PF00356 Bacterial regulatory proteins, lacI family KC397_14095 PF18074 Primosomal protein N C-terminal domain KC397_14095 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KC397_14095 PF17764 3′ DNA-binding domain (3′BD) KC397_14095 PF00270 DEAD/DEAH box helicase KC397_14095 PF00271 Helicase conserved C-terminal domain KC397_14100 PF01197 Ribosomal protein L31 KC397_14105 PF00390 Malic enzyme, N-terminal domain KC397_14105 PF03949 Malic enzyme, NAD binding domain KC397_14110 PF01340 Met Apo-repressor, MetJ KC397_14115 PF01053 Cys/Met metabolism PLP-dependent enzyme KC397_14120 PF00696 Amino acid kinase family KC397_14120 PF00742 Homoserine dehydrogenase KC397_14120 PF03447 Homoserine dehydrogenase, NAD binding domain KC397_14125 PF02219 Methylenetetrahydrofolate reductase KC397_14130 PF06005 Cell division protein ZapB KC397_14135 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KC397_14140 PF00365 Phosphofructokinase KC397_14145 PF01545 Cation efflux family KC397_14145 PF16916 Dimerisation domain of Zinc Transporter KC397_14155 PF00072 Response regulator receiver domain KC397_14155 PF00486 Transcriptional regulatory protein, C terminal KC397_14160 PF00512 His Kinase A (phospho-acceptor) domain KC397_14160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_14160 PF16527 Two-component sensor protein CpxA, periplasmic domain KC397_14160 PF00672 HAMP domain KC397_14165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KC397_14165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KC397_14170 PF00588 SpoU rRNA Methylase family KC397_14175 PF04186 FxsA cytoplasmic membrane protein KC397_14180 PF00990 Diguanylate cyclase, GGDEF domain KC397_14185 PF00206 Lyase KC397_14185 PF10415 Fumarase C C-terminus KC397_14190 PF03605 Anaerobic c4-dicarboxylate membrane transporter KC397_14195 PF03606 C4-dicarboxylate anaerobic carrier KC397_14205 PF00696 Amino acid kinase family KC397_14210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KC397_14210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KC397_14215 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KC397_14215 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KC397_14220 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain KC397_14220 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain KC397_14225 PF02863 Arginine repressor, C-terminal domain KC397_14225 PF01316 Arginine repressor, DNA binding domain KC397_14230 PF11412 Disulphide bond corrector protein DsbC KC397_14230 PF02683 Cytochrome C biogenesis protein transmembrane region KC397_14235 PF00196 Bacterial regulatory proteins, luxR family KC397_14235 PF00072 Response regulator receiver domain KC397_14240 PF03471 Transporter associated domain KC397_14240 PF00999 Sodium/hydrogen exchanger family KC397_14240 PF02080 TrkA-C domain KC397_14250 PF00474 Sodium:solute symporter family KC397_14255 PF02592 Putative vitamin uptake transporter KC397_14260 PF00625 Guanylate kinase KC397_14265 PF01192 RNA polymerase Rpb6 KC397_14270 PF04607 Region found in RelA / SpoT proteins KC397_14270 PF13291 ACT domain KC397_14270 PF02824 TGS domain KC397_14275 PF00588 SpoU rRNA Methylase family KC397_14275 PF12105 SpoU, rRNA methylase, C-terminal KC397_14280 PF00270 DEAD/DEAH box helicase KC397_14280 PF00271 Helicase conserved C-terminal domain KC397_14280 PF17191 RecG wedge domain KC397_14285 PF00860 Permease family KC397_14290 PF00512 His Kinase A (phospho-acceptor) domain KC397_14290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_14290 PF00672 HAMP domain KC397_14295 PF00486 Transcriptional regulatory protein, C terminal KC397_14295 PF00072 Response regulator receiver domain KC397_14300 PF01081 KDPG and KHG aldolase KC397_14305 PF02447 GntP family permease KC397_14310 PF01202 Shikimate kinase KC397_14315 PF00920 Dehydratase family KC397_14320 PF00356 Bacterial regulatory proteins, lacI family KC397_14320 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KC397_14325 PF01272 Transcription elongation factor, GreA/GreB, C-term KC397_14325 PF03449 Transcription elongation factor, N-terminal KC397_14335 PF16921 Tex protein YqgF-like domain KC397_14335 PF09371 Tex-like protein N-terminal domain KC397_14335 PF17674 HHH domain KC397_14335 PF00575 S1 RNA binding domain KC397_14345 PF00561 alpha/beta hydrolase fold KC397_14350 PF00156 Phosphoribosyl transferase domain KC397_14355 PF01521 Iron-sulphur cluster biosynthesis KC397_14355 PF01106 NifU-like domain KC397_14360 PF00293 NUDIX domain KC397_14365 PF00459 Inositol monophosphatase family KC397_14370 PF01203 Type II secretion system (T2SS), protein N KC397_14375 PF04612 Type II secretion system (T2SS), protein M KC397_14380 PF05134 Type II secretion system (T2SS), protein L KC397_14380 PF12693 GspL periplasmic domain KC397_14385 PF03934 Type II secretion system (T2SS), protein K KC397_14390 PF11612 Type II secretion system (T2SS), protein J KC397_14390 PF07963 Prokaryotic N-terminal methylation motif KC397_14395 PF07963 Prokaryotic N-terminal methylation motif KC397_14395 PF02501 Type II secretion system (T2SS), protein I KC397_14400 PF12019 Type II transport protein GspH KC397_14405 PF07963 Prokaryotic N-terminal methylation motif KC397_14405 PF08334 Type II secretion system (T2SS), protein G KC397_14410 PF00482 Type II secretion system (T2SS), protein F KC397_14415 PF00437 Type II/IV secretion system protein KC397_14420 PF00263 Bacterial type II and III secretion system protein KC397_14420 PF03958 Bacterial type II/III secretion system short domain KC397_14425 PF11356 Type II secretion system protein C KC397_14430 PF01479 S4 domain KC397_14435 PF01430 Hsp33 protein KC397_14440 PF01293 Phosphoenolpyruvate carboxykinase KC397_14445 PF05170 AsmA family KC397_14450 PF00583 Acetyltransferase (GNAT) family KC397_14450 PF09500 Putative thioesterase (yiiD_Cterm) KC397_14455 PF02580 D-Tyr-tRNA(Tyr) deacylase KC397_14460 PF03631 Virulence factor BrkB KC397_14475 PF00679 Elongation factor G C-terminus KC397_14475 PF03144 Elongation factor Tu domain 2 KC397_14475 PF00009 Elongation factor Tu GTP binding domain KC397_14480 PF00120 Glutamine synthetase, catalytic domain KC397_14480 PF03951 Glutamine synthetase, beta-Grasp domain KC397_14490 PF00989 PAS fold KC397_14490 PF00512 His Kinase A (phospho-acceptor) domain KC397_14490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_14495 PF02954 Bacterial regulatory protein, Fis family KC397_14495 PF00072 Response regulator receiver domain KC397_14495 PF00158 Sigma-54 interaction domain KC397_14500 PF13188 PAS domain KC397_14500 PF00990 Diguanylate cyclase, GGDEF domain KC397_14500 PF03707 Bacterial signalling protein N terminal repeat KC397_14500 PF00563 EAL domain KC397_14505 PF00962 Adenosine/AMP deaminase KC397_14565 PF01177 Asp/Glu/Hydantoin racemase KC397_14575 PF07715 TonB-dependent Receptor Plug Domain KC397_14575 PF00593 TonB dependent receptor KC397_14580 PF05958 tRNA (Uracil-5-)-methyltransferase KC397_14590 PF00440 Bacterial regulatory proteins, tetR family KC397_14595 PF07992 Pyridine nucleotide-disulphide oxidoreductase KC397_14595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KC397_14600 PF01554 MatE KC397_14610 PF00717 Peptidase S24-like KC397_14610 PF01726 LexA DNA binding domain KC397_14615 PF01219 Prokaryotic diacylglycerol kinase KC397_14620 PF01553 Acyltransferase KC397_14625 PF01040 UbiA prenyltransferase family KC397_14630 PF04345 Chorismate lyase KC397_14635 PF03748 Flagellar basal body-associated protein FliL KC397_14640 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease KC397_14640 PF01694 Rhomboid family KC397_14645 PF00581 Rhodanese-like domain KC397_14650 PF00140 Sigma-70 factor, region 1.2 KC397_14650 PF04542 Sigma-70 region 2 KC397_14650 PF04545 Sigma-70, region 4 KC397_14655 PF18075 FtsX extracellular domain KC397_14660 PF00005 ABC transporter KC397_14665 PF00448 SRP54-type protein, GTPase domain KC397_14665 PF02881 SRP54-type protein, helical bundle domain KC397_14680 PF01914 MarC family integral membrane protein KC397_14710 PF00210 Ferritin-like domain KC397_14725 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KC397_14725 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KC397_14730 PF01022 Bacterial regulatory protein, arsR family KC397_14735 PF08668 HDOD domain KC397_14735 PF00563 EAL domain KC397_14740 PF01810 LysE type translocator KC397_14745 PF12146 Serine aminopeptidase, S33 KC397_14765 PF03942 DTW domain KC397_14770 PF00563 EAL domain KC397_14770 PF08495 FIST N domain KC397_14770 PF10442 FIST C domain KC397_14770 PF00990 Diguanylate cyclase, GGDEF domain KC397_14775 PF13419 Haloacid dehalogenase-like hydrolase KC397_14780 PF02899 Phage integrase, N-terminal SAM-like domain KC397_14780 PF00589 Phage integrase family KC397_14785 PF04340 Protein of unknown function, DUF484 KC397_14790 PF01678 Diaminopimelate epimerase KC397_14795 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KC397_14795 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KC397_14805 PF01491 Frataxin-like domain KC397_14810 PF01295 Adenylate cyclase, class-I KC397_14810 PF12633 Adenylate cyclase NT domain KC397_14815 PF03900 Porphobilinogen deaminase, C-terminal domain KC397_14815 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KC397_14820 PF02602 Uroporphyrinogen-III synthase HemD KC397_14825 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase KC397_14830 PF07719 Tetratricopeptide repeat KC397_14830 PF07219 HemY protein N-terminus KC397_14835 PF04055 Radical SAM superfamily KC397_14835 PF06969 HemN C-terminal domain KC397_14840 PF10675 Protein of unknown function (DUF2489) KC397_14845 PF04220 Der GTPase activator (YihI) KC397_14855 PF00034 Cytochrome c KC397_14860 PF01926 50S ribosome-binding GTPase KC397_14865 PF01367 5'-3' exonuclease, C-terminal SAM fold KC397_14865 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KC397_14865 PF00476 DNA polymerase family A KC397_14865 PF01612 3'-5' exonuclease KC397_14875 PF00490 Delta-aminolevulinic acid dehydratase KC397_14880 PF01026 TatD related DNase KC397_14885 PF00902 Sec-independent protein translocase protein (TatC) KC397_14890 PF02416 mttA/Hcf106 family KC397_14895 PF02416 mttA/Hcf106 family KC397_14900 PF03109 ABC1 family KC397_14905 PF02036 SCP-2 sterol transfer family KC397_14910 PF01209 ubiE/COQ5 methyltransferase family KC397_14915 PF02646 RmuC family KC397_14930 PF02311 AraC-like ligand binding domain KC397_14930 PF12833 Helix-turn-helix domain KC397_14940 PF11762 L-arabinose isomerase C-terminal domain KC397_14940 PF02610 L-arabinose isomerase KC397_14945 PF00596 Class II Aldolase and Adducin N-terminal domain KC397_14950 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KC397_14950 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KC397_14955 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KC397_14960 PF00005 ABC transporter KC397_14965 PF02653 Branched-chain amino acid transport system / permease component KC397_14975 PF10625 Universal stress protein B (UspB) KC397_14980 PF00210 Ferritin-like domain KC397_14985 PF00582 Universal stress protein family KC397_14990 PF00892 EamA-like transporter family KC397_15000 PF04445 Putative SAM-dependent methyltransferase KC397_15005 PF00990 Diguanylate cyclase, GGDEF domain KC397_15005 PF00563 EAL domain KC397_15005 PF08448 PAS fold KC397_15010 PF01037 Lrp/AsnC ligand binding domain KC397_15020 PF07690 Major Facilitator Superfamily KC397_15025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_15025 PF03466 LysR substrate binding domain KC397_15030 PF01321 Creatinase/Prolidase N-terminal domain KC397_15030 PF00557 Metallopeptidase family M24 KC397_15030 PF01321 Creatinase/Prolidase N-terminal domain KC397_15030 PF00557 Metallopeptidase family M24 KC397_15035 PF13977 BetI-type transcriptional repressor, C-terminal KC397_15035 PF00440 Bacterial regulatory proteins, tetR family KC397_15040 PF00171 Aldehyde dehydrogenase family KC397_15045 PF00732 GMC oxidoreductase KC397_15045 PF05199 GMC oxidoreductase KC397_15050 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KC397_15055 PF00528 Binding-protein-dependent transport system inner membrane component KC397_15060 PF00005 ABC transporter KC397_15060 PF00571 CBS domain KC397_15065 PF04055 Radical SAM superfamily KC397_15065 PF06968 Biotin and Thiamin Synthesis associated domain KC397_15070 PF05690 Thiazole biosynthesis protein ThiG KC397_15080 PF00899 ThiF family KC397_15085 PF02581 Thiamine monophosphate synthase KC397_15090 PF13667 ThiC-associated domain KC397_15090 PF01964 Radical SAM ThiC family KC397_15095 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KC397_15100 PF00394 Multicopper oxidase KC397_15100 PF07731 Multicopper oxidase KC397_15100 PF07732 Multicopper oxidase KC397_15150 PF12724 Flavodoxin domain KC397_15155 PF02386 Cation transport protein KC397_15160 PF09186 Domain of unknown function (DUF1949) KC397_15160 PF01205 Uncharacterized protein family UPF0029 KC397_15165 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KC397_15165 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KC397_15165 PF00378 Enoyl-CoA hydratase/isomerase KC397_15170 PF02803 Thiolase, C-terminal domain KC397_15170 PF00108 Thiolase, N-terminal domain KC397_15175 PF03466 LysR substrate binding domain KC397_15175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_15180 PF07690 Major Facilitator Superfamily KC397_15185 PF00497 Bacterial extracellular solute-binding proteins, family 3 KC397_15190 PF00528 Binding-protein-dependent transport system inner membrane component KC397_15195 PF00132 Bacterial transferase hexapeptide (six repeats) KC397_15195 PF14602 Hexapeptide repeat of succinyl-transferase KC397_15195 PF12804 MobA-like NTP transferase domain KC397_15200 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KC397_15200 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KC397_15205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KC397_15205 PF02874 ATP synthase alpha/beta family, beta-barrel domain KC397_15210 PF00231 ATP synthase KC397_15215 PF02874 ATP synthase alpha/beta family, beta-barrel domain KC397_15215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KC397_15215 PF00306 ATP synthase alpha/beta chain, C terminal domain KC397_15220 PF00213 ATP synthase delta (OSCP) subunit KC397_15225 PF00430 ATP synthase B/B' CF(0) KC397_15230 PF00137 ATP synthase subunit C KC397_15235 PF00119 ATP synthase A chain KC397_15240 PF03899 ATP synthase I chain KC397_15245 PF17762 HTH domain found in ParB protein KC397_15245 PF02195 ParB-like nuclease domain KC397_15250 PF13614 AAA domain KC397_15255 PF02527 rRNA small subunit methyltransferase G KC397_15260 PF01134 Glucose inhibited division protein A KC397_15260 PF13932 GidA associated domain KC397_15265 PF00258 Flavodoxin KC397_15270 PF01926 50S ribosome-binding GTPase KC397_15270 PF12631 MnmE helical domain KC397_15270 PF10396 GTP-binding protein TrmE N-terminus KC397_15275 PF02096 60Kd inner membrane protein KC397_15275 PF14849 YidC periplasmic domain KC397_15280 PF01809 Putative membrane protein insertion efficiency factor KC397_15285 PF00825 Ribonuclease P KC397_15290 PF00468 Ribosomal protein L34 KC397_15295 PF00005 ABC transporter KC397_15300 PF00528 Binding-protein-dependent transport system inner membrane component KC397_15305 PF00497 Bacterial extracellular solute-binding proteins, family 3 KC397_15325 PF13302 Acetyltransferase (GNAT) domain KC397_15335 PF00155 Aminotransferase class I and II KC397_15335 PF00392 Bacterial regulatory proteins, gntR family KC397_15345 PF03783 Curli production assembly/transport component CsgG KC397_15350 PF10614 Type VIII secretion system (T8SS), CsgF protein KC397_15375 PF00005 ABC transporter KC397_15375 PF08402 TOBE domain KC397_15380 PF01547 Bacterial extracellular solute-binding protein KC397_15385 PF14785 Maltose transport system permease protein MalF P2 domain KC397_15385 PF00528 Binding-protein-dependent transport system inner membrane component KC397_15390 PF00528 Binding-protein-dependent transport system inner membrane component KC397_15405 PF00765 Autoinducer synthase KC397_15410 PF03472 Autoinducer binding domain KC397_15410 PF00196 Bacterial regulatory proteins, luxR family KC397_15415 PF08220 DeoR-like helix-turn-helix domain KC397_15415 PF00455 DeoR C terminal sensor domain KC397_15435 PF05661 Protein of unknown function (DUF808) KC397_15440 PF05958 tRNA (Uracil-5-)-methyltransferase KC397_15445 PF01979 Amidohydrolase family KC397_15450 PF03476 MOSC N-terminal beta barrel domain KC397_15450 PF03473 MOSC domain KC397_15450 PF00111 2Fe-2S iron-sulfur cluster binding domain KC397_15480 PF00005 ABC transporter KC397_15485 PF01032 FecCD transport family KC397_15495 PF02472 Biopolymer transport protein ExbD/TolR KC397_15500 PF01618 MotA/TolQ/ExbB proton channel family KC397_15505 PF03544 Gram-negative bacterial TonB protein C-terminal KC397_15510 PF06228 Haem utilisation ChuX/HutX KC397_15515 PF01243 Pyridoxamine 5'-phosphate oxidase KC397_15520 PF02743 Cache domain KC397_15520 PF00672 HAMP domain KC397_15520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_15525 PF13520 Amino acid permease KC397_15530 PF01037 Lrp/AsnC ligand binding domain KC397_15530 PF13404 AsnC-type helix-turn-helix domain KC397_15555 PF03063 Prismane/CO dehydrogenase family KC397_15560 PF00970 Oxidoreductase FAD-binding domain KC397_15560 PF00111 2Fe-2S iron-sulfur cluster binding domain KC397_15560 PF00175 Oxidoreductase NAD-binding domain KC397_15565 PF12792 CSS motif domain associated with EAL KC397_15565 PF00563 EAL domain KC397_15575 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KC397_15575 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KC397_15590 PF00072 Response regulator receiver domain KC397_15590 PF01627 Hpt domain KC397_15590 PF00512 His Kinase A (phospho-acceptor) domain KC397_15590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_15590 PF00672 HAMP domain KC397_15590 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KC397_15595 PF03707 Bacterial signalling protein N terminal repeat KC397_15595 PF00990 Diguanylate cyclase, GGDEF domain KC397_15595 PF00563 EAL domain KC397_15600 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KC397_15610 PF02566 OsmC-like protein KC397_15620 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal KC397_15620 PF14602 Hexapeptide repeat of succinyl-transferase KC397_15620 PF00132 Bacterial transferase hexapeptide (six repeats) KC397_15625 PF00892 EamA-like transporter family KC397_15640 PF03466 LysR substrate binding domain KC397_15640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_15655 PF00501 AMP-binding enzyme KC397_15675 PF00486 Transcriptional regulatory protein, C terminal KC397_15675 PF00072 Response regulator receiver domain KC397_15680 PF00512 His Kinase A (phospho-acceptor) domain KC397_15680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_15680 PF08521 Two-component sensor kinase N-terminal KC397_15685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_15685 PF03466 LysR substrate binding domain KC397_15690 PF00501 AMP-binding enzyme KC397_15690 PF13193 AMP-binding enzyme C-terminal domain KC397_15695 PF00351 Biopterin-dependent aromatic amino acid hydroxylase KC397_15700 PF01329 Pterin 4 alpha carbinolamine dehydratase KC397_15705 PF01554 MatE KC397_15715 PF03741 Integral membrane protein TerC family KC397_15725 PF00583 Acetyltransferase (GNAT) family KC397_15730 PF00202 Aminotransferase class-III KC397_15735 PF06339 Ectoine synthase KC397_15740 PF13840 ACT domain KC397_15740 PF00696 Amino acid kinase family KC397_15755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_15755 PF03466 LysR substrate binding domain KC397_15765 PF11849 Domain of unknown function (DUF3369) KC397_15770 PF00563 EAL domain KC397_15770 PF00990 Diguanylate cyclase, GGDEF domain KC397_15770 PF03707 Bacterial signalling protein N terminal repeat KC397_15775 PF00490 Delta-aminolevulinic acid dehydratase KC397_15785 PF00118 TCP-1/cpn60 chaperonin family KC397_15790 PF00166 Chaperonin 10 Kd subunit KC397_15795 PF03448 MgtE intracellular N domain KC397_15795 PF01769 Divalent cation transporter KC397_15795 PF00571 CBS domain KC397_15805 PF00672 HAMP domain KC397_15805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_15815 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KC397_15820 PF00528 Binding-protein-dependent transport system inner membrane component KC397_15825 PF00005 ABC transporter KC397_15825 PF00571 CBS domain KC397_15835 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KC397_15835 PF17944 Arginine decarboxylase C-terminal helical extension KC397_15835 PF17810 Arginine decarboxylase helical bundle domain KC397_15840 PF00491 Arginase family KC397_15845 PF01037 Lrp/AsnC ligand binding domain KC397_15850 PF01053 Cys/Met metabolism PLP-dependent enzyme KC397_15855 PF00497 Bacterial extracellular solute-binding proteins, family 3 KC397_15860 PF00528 Binding-protein-dependent transport system inner membrane component KC397_15865 PF00005 ABC transporter KC397_15870 PF00768 D-alanyl-D-alanine carboxypeptidase KC397_15870 PF07943 Penicillin-binding protein 5, C-terminal domain KC397_15885 PF00529 HlyD membrane-fusion protein of T1SS KC397_15885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_15895 PF00194 Eukaryotic-type carbonic anhydrase KC397_15905 PF00119 ATP synthase A chain KC397_15910 PF00137 ATP synthase subunit C KC397_15915 PF00430 ATP synthase B/B' CF(0) KC397_15920 PF00213 ATP synthase delta (OSCP) subunit KC397_15925 PF00306 ATP synthase alpha/beta chain, C terminal domain KC397_15925 PF02874 ATP synthase alpha/beta family, beta-barrel domain KC397_15925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KC397_15930 PF00231 ATP synthase KC397_15935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KC397_15935 PF02874 ATP synthase alpha/beta family, beta-barrel domain KC397_15940 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KC397_15940 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KC397_15945 PF03060 Nitronate monooxygenase KC397_15950 PF01810 LysE type translocator KC397_15955 PF00270 DEAD/DEAH box helicase KC397_15955 PF00271 Helicase conserved C-terminal domain KC397_15960 PF00072 Response regulator receiver domain KC397_15960 PF00158 Sigma-54 interaction domain KC397_15960 PF02954 Bacterial regulatory protein, Fis family KC397_15965 PF00512 His Kinase A (phospho-acceptor) domain KC397_15965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_15970 PF00672 HAMP domain KC397_15970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_15980 PF08267 Cobalamin-independent synthase, N-terminal domain KC397_15980 PF01717 Cobalamin-independent synthase, Catalytic domain KC397_15985 PF06826 Predicted Permease Membrane Region KC397_15985 PF02080 TrkA-C domain KC397_15990 PF00132 Bacterial transferase hexapeptide (six repeats) KC397_15995 PF02558 Ketopantoate reductase PanE/ApbA KC397_15995 PF08546 Ketopantoate reductase PanE/ApbA C terminal KC397_16015 PF01810 LysE type translocator KC397_16050 PF09350 Domain of unknown function (DUF1992) KC397_16060 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) KC397_16065 PF02253 Phospholipase A1 KC397_16080 PF02347 Glycine cleavage system P-protein KC397_16085 PF01597 Glycine cleavage H-protein KC397_16090 PF00464 Serine hydroxymethyltransferase KC397_16100 PF01571 Aminomethyltransferase folate-binding domain KC397_16100 PF08669 Glycine cleavage T-protein C-terminal barrel domain KC397_16105 PF00089 Trypsin KC397_16110 PF00990 Diguanylate cyclase, GGDEF domain KC397_16110 PF17158 Membrane-associated sensor, integral membrane domain KC397_16115 PF08448 PAS fold KC397_16115 PF08447 PAS fold KC397_16115 PF00990 Diguanylate cyclase, GGDEF domain KC397_16115 PF00563 EAL domain KC397_16120 PF00294 pfkB family carbohydrate kinase KC397_16135 PF13419 Haloacid dehalogenase-like hydrolase KC397_16155 PF00226 DnaJ domain KC397_16155 PF01556 DnaJ C terminal domain KC397_16155 PF00684 DnaJ central domain KC397_16165 PF00990 Diguanylate cyclase, GGDEF domain KC397_16165 PF00563 EAL domain KC397_16165 PF00498 FHA domain KC397_16170 PF12241 Trans-2-enoyl-CoA reductase catalytic region KC397_16170 PF07055 Enoyl reductase FAD binding domain KC397_16170 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase KC397_16175 PF13472 GDSL-like Lipase/Acylhydrolase family KC397_16180 PF00005 ABC transporter KC397_16195 PF02626 Carboxyltransferase domain, subdomain A and B KC397_16205 PF03746 LamB/YcsF family KC397_16210 PF08448 PAS fold KC397_16210 PF08447 PAS fold KC397_16210 PF05231 MASE1 KC397_16210 PF13426 PAS domain KC397_16210 PF00563 EAL domain KC397_16210 PF00990 Diguanylate cyclase, GGDEF domain KC397_16215 PF16363 GDP-mannose 4,6 dehydratase KC397_16220 PF12729 Four helix bundle sensory module for signal transduction KC397_16220 PF00672 HAMP domain KC397_16220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_16225 PF03222 Tryptophan/tyrosine permease family KC397_16230 PF04336 Acyl carrier protein phosphodiesterase KC397_16235 PF00270 DEAD/DEAH box helicase KC397_16235 PF00271 Helicase conserved C-terminal domain KC397_16240 PF00440 Bacterial regulatory proteins, tetR family KC397_16240 PF08361 MAATS-type transcriptional repressor, C-terminal region KC397_16245 PF00034 Cytochrome c KC397_16250 PF01212 Beta-eliminating lyase KC397_16255 PF00293 NUDIX domain KC397_16260 PF07728 AAA domain (dynein-related subfamily) KC397_16260 PF17868 AAA lid domain KC397_16260 PF12592 Protein of unknown function (DUF3763) KC397_16265 PF05762 VWA domain containing CoxE-like protein KC397_16280 PF00593 TonB dependent receptor KC397_16280 PF07715 TonB-dependent Receptor Plug Domain KC397_16280 PF07660 Secretin and TonB N terminus short domain KC397_16295 PF00672 HAMP domain KC397_16295 PF12729 Four helix bundle sensory module for signal transduction KC397_16295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_16305 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase KC397_16315 PF00535 Glycosyl transferase family 2 KC397_16325 PF03466 LysR substrate binding domain KC397_16325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_16330 PF00892 EamA-like transporter family KC397_16335 PF12833 Helix-turn-helix domain KC397_16335 PF02311 AraC-like ligand binding domain KC397_16360 PF16200 C-terminal region of band_7 KC397_16360 PF01145 SPFH domain / Band 7 family KC397_16370 PF00296 Luciferase-like monooxygenase KC397_16375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_16375 PF03466 LysR substrate binding domain KC397_16385 PF02634 FdhD/NarQ family KC397_16390 PF03466 LysR substrate binding domain KC397_16390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_16395 PF01062 Bestrophin, RFP-TM, chloride channel KC397_16400 PF00384 Molybdopterin oxidoreductase KC397_16400 PF01568 Molydopterin dinucleotide binding domain KC397_16405 PF01654 Cytochrome bd terminal oxidase subunit I KC397_16410 PF02322 Cytochrome bd terminal oxidase subunit II KC397_16415 PF01081 KDPG and KHG aldolase KC397_16420 PF00294 pfkB family carbohydrate kinase KC397_16425 PF02614 Glucuronate isomerase KC397_16430 PF01232 Mannitol dehydrogenase Rossmann domain KC397_16430 PF08125 Mannitol dehydrogenase C-terminal domain KC397_16435 PF17137 Domain of unknown function (DUF5110) KC397_16435 PF01055 Glycosyl hydrolases family 31 KC397_16435 PF16338 Domain of unknown function (DUF4968) KC397_16435 PF13802 Galactose mutarotase-like KC397_16440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KC397_16445 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KC397_16450 PF03480 Bacterial extracellular solute-binding protein, family 7 KC397_16455 PF07729 FCD domain KC397_16455 PF00392 Bacterial regulatory proteins, gntR family KC397_16460 PF03786 D-mannonate dehydratase (UxuA) KC397_16465 PF00325 Bacterial regulatory proteins, crp family KC397_16465 PF04198 Putative sugar-binding domain KC397_16470 PF01232 Mannitol dehydrogenase Rossmann domain KC397_16470 PF08125 Mannitol dehydrogenase C-terminal domain KC397_16475 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KC397_16475 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KC397_16480 PF07690 Major Facilitator Superfamily KC397_16485 PF13419 Haloacid dehalogenase-like hydrolase KC397_16490 PF00881 Nitroreductase family KC397_16500 PF02028 BCCT, betaine/carnitine/choline family transporter KC397_16505 PF03466 LysR substrate binding domain KC397_16505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_16510 PF01168 Alanine racemase, N-terminal domain KC397_16510 PF00842 Alanine racemase, C-terminal domain KC397_16515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_16515 PF00672 HAMP domain KC397_16520 PF00005 ABC transporter KC397_16525 PF01497 Periplasmic binding protein KC397_16530 PF01032 FecCD transport family KC397_16540 PF07715 TonB-dependent Receptor Plug Domain KC397_16540 PF00593 TonB dependent receptor KC397_16560 PF02028 BCCT, betaine/carnitine/choline family transporter KC397_16590 PF18267 Rubredoxin NAD+ reductase C-terminal domain KC397_16590 PF07992 Pyridine nucleotide-disulphide oxidoreductase KC397_16590 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KC397_16590 PF04324 BFD-like [2Fe-2S] binding domain KC397_16590 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KC397_16595 PF13806 Rieske-like [2Fe-2S] domain KC397_16600 PF01226 Formate/nitrite transporter KC397_16605 PF14824 Sirohaem biosynthesis protein central KC397_16605 PF10414 Sirohaem synthase dimerisation region KC397_16605 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KC397_16625 PF11756 Nitrous oxide-stimulated promoter KC397_16630 PF07690 Major Facilitator Superfamily KC397_16635 PF00085 Thioredoxin KC397_16640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KC397_16640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KC397_16645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_16650 PF00873 AcrB/AcrD/AcrF family KC397_16655 PF02397 Bacterial sugar transferase KC397_16665 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KC397_16665 PF10531 SLBB domain KC397_16665 PF02563 Polysaccharide biosynthesis/export protein KC397_16690 PF13439 Glycosyltransferase Family 4 KC397_16690 PF00534 Glycosyl transferases group 1 KC397_16695 PF13439 Glycosyltransferase Family 4 KC397_16695 PF00534 Glycosyl transferases group 1 KC397_16705 PF08532 Beta-galactosidase trimerisation domain KC397_16705 PF08533 Beta-galactosidase C-terminal domain KC397_16705 PF02449 Beta-galactosidase KC397_16710 PF02754 Cysteine-rich domain KC397_16710 PF13183 4Fe-4S dicluster domain KC397_16715 PF00890 FAD binding domain KC397_16720 PF04324 BFD-like [2Fe-2S] binding domain KC397_16720 PF01266 FAD dependent oxidoreductase KC397_16725 PF00230 Major intrinsic protein KC397_16730 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KC397_16730 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KC397_16735 PF10688 Bacterial inner membrane protein KC397_16750 PF04363 Protein of unknown function (DUF496) KC397_16760 PF04337 Protein of unknown function, DUF480 KC397_16765 PF01541 GIY-YIG catalytic domain KC397_16775 PF13407 Periplasmic binding protein domain KC397_16780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_16780 PF09308 LuxQ, periplasmic KC397_16780 PF00072 Response regulator receiver domain KC397_16780 PF00512 His Kinase A (phospho-acceptor) domain KC397_16800 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KC397_16800 PF07685 CobB/CobQ-like glutamine amidotransferase domain KC397_16810 PF00528 Binding-protein-dependent transport system inner membrane component KC397_16815 PF00005 ABC transporter KC397_16815 PF03459 TOBE domain KC397_16835 PF12805 FUSC-like inner membrane protein yccS KC397_16840 PF03412 Peptidase C39 family KC397_16840 PF00005 ABC transporter KC397_16840 PF00664 ABC transporter transmembrane region KC397_16855 PF00529 HlyD membrane-fusion protein of T1SS KC397_16860 PF00691 OmpA family KC397_16860 PF05736 OprF membrane domain KC397_16875 PF12462 DNA helicase IV / RNA helicase N terminal KC397_16875 PF00580 UvrD/REP helicase N-terminal domain KC397_16875 PF13361 UvrD-like helicase C-terminal domain KC397_16880 PF00857 Isochorismatase family KC397_16885 PF02142 MGS-like domain KC397_16890 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KC397_16895 PF00072 Response regulator receiver domain KC397_16895 PF01627 Hpt domain KC397_16895 PF00512 His Kinase A (phospho-acceptor) domain KC397_16895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_16895 PF00672 HAMP domain KC397_16900 PF02887 Pyruvate kinase, alpha/beta domain KC397_16900 PF00224 Pyruvate kinase, barrel domain KC397_16905 PF07690 Major Facilitator Superfamily KC397_16915 PF00672 HAMP domain KC397_16915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_16915 PF00512 His Kinase A (phospho-acceptor) domain KC397_16920 PF02954 Bacterial regulatory protein, Fis family KC397_16920 PF00072 Response regulator receiver domain KC397_16920 PF14532 Sigma-54 interaction domain KC397_16930 PF00465 Iron-containing alcohol dehydrogenase KC397_16935 PF12833 Helix-turn-helix domain KC397_16935 PF06719 AraC-type transcriptional regulator N-terminus KC397_16940 PF06483 Chitinase C KC397_16940 PF00704 Glycosyl hydrolases family 18 KC397_16950 PF00483 Nucleotidyl transferase KC397_16955 PF00990 Diguanylate cyclase, GGDEF domain KC397_16975 PF02355 Protein export membrane protein KC397_16975 PF07549 SecD/SecF GG Motif KC397_16975 PF13721 SecD export protein N-terminal TM region KC397_16980 PF02355 Protein export membrane protein KC397_16980 PF07549 SecD/SecF GG Motif KC397_16985 PF00106 short chain dehydrogenase KC397_16990 PF02803 Thiolase, C-terminal domain KC397_16990 PF00108 Thiolase, N-terminal domain KC397_17000 PF00561 alpha/beta hydrolase fold KC397_17000 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus KC397_17020 PF03264 NapC/NirT cytochrome c family, N-terminal region KC397_17025 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) KC397_17030 PF01568 Molydopterin dinucleotide binding domain KC397_17030 PF00384 Molybdopterin oxidoreductase KC397_17030 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KC397_17045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_17045 PF07730 Histidine kinase KC397_17045 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KC397_17045 PF00672 HAMP domain KC397_17050 PF00196 Bacterial regulatory proteins, luxR family KC397_17050 PF00072 Response regulator receiver domain KC397_17055 PF03606 C4-dicarboxylate anaerobic carrier KC397_17070 PF07690 Major Facilitator Superfamily KC397_17075 PF12729 Four helix bundle sensory module for signal transduction KC397_17075 PF00672 HAMP domain KC397_17075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_17080 PF13419 Haloacid dehalogenase-like hydrolase KC397_17085 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KC397_17085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KC397_17095 PF05736 OprF membrane domain KC397_17095 PF00691 OmpA family KC397_17100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_17100 PF08447 PAS fold KC397_17105 PF00456 Transketolase, thiamine diphosphate binding domain KC397_17105 PF02780 Transketolase, C-terminal domain KC397_17105 PF02779 Transketolase, pyrimidine binding domain KC397_17110 PF00923 Transaldolase/Fructose-6-phosphate aldolase KC397_17120 PF00581 Rhodanese-like domain KC397_17125 PF00899 ThiF family KC397_17130 PF00994 Probable molybdopterin binding domain KC397_17130 PF03454 MoeA C-terminal region (domain IV) KC397_17130 PF03453 MoeA N-terminal region (domain I and II) KC397_17135 PF01227 GTP cyclohydrolase I KC397_17140 PF13520 Amino acid permease KC397_17145 PF05985 Ethanolamine ammonia-lyase light chain (EutC) KC397_17150 PF06751 Ethanolamine ammonia lyase large subunit (EutB) KC397_17155 PF12833 Helix-turn-helix domain KC397_17160 PF01641 SelR domain KC397_17160 PF01625 Peptide methionine sulfoxide reductase KC397_17165 PF01268 Formate--tetrahydrofolate ligase KC397_17180 PF03466 LysR substrate binding domain KC397_17180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_17185 PF13419 Haloacid dehalogenase-like hydrolase KC397_17190 PF14760 Rnk N-terminus KC397_17190 PF01272 Transcription elongation factor, GreA/GreB, C-term KC397_17200 PF13419 Haloacid dehalogenase-like hydrolase KC397_17205 PF00202 Aminotransferase class-III KC397_17210 PF00266 Aminotransferase class-V KC397_17220 PF00005 ABC transporter KC397_17225 PF00528 Binding-protein-dependent transport system inner membrane component KC397_17230 PF00392 Bacterial regulatory proteins, gntR family KC397_17230 PF07702 UTRA domain KC397_17240 PF18027 Cytosolic carboxypeptidase N-terminal domain KC397_17240 PF00246 Zinc carboxypeptidase KC397_17265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KC397_17270 PF00528 Binding-protein-dependent transport system inner membrane component KC397_17275 PF12911 N-terminal TM domain of oligopeptide transport permease C KC397_17275 PF00528 Binding-protein-dependent transport system inner membrane component KC397_17280 PF00005 ABC transporter KC397_17280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KC397_17300 PF00512 His Kinase A (phospho-acceptor) domain KC397_17300 PF09456 RcsC Alpha-Beta-Loop (ABL) KC397_17300 PF00072 Response regulator receiver domain KC397_17300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_17305 PF00360 Phytochrome region KC397_17305 PF00990 Diguanylate cyclase, GGDEF domain KC397_17305 PF00563 EAL domain KC397_17305 PF01590 GAF domain KC397_17310 PF00072 Response regulator receiver domain KC397_17310 PF00196 Bacterial regulatory proteins, luxR family KC397_17315 PF00990 Diguanylate cyclase, GGDEF domain KC397_17315 PF07694 5TMR of 5TMR-LYT KC397_17330 PF05525 Branched-chain amino acid transport protein KC397_17345 PF08774 VRR-NUC domain KC397_17345 PF18081 Fanconi anemia-associated nuclease SAP domain KC397_17365 PF13302 Acetyltransferase (GNAT) domain KC397_17370 PF00111 2Fe-2S iron-sulfur cluster binding domain KC397_17370 PF01799 [2Fe-2S] binding domain KC397_17375 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KC397_17390 PF00465 Iron-containing alcohol dehydrogenase KC397_17395 PF06719 AraC-type transcriptional regulator N-terminus KC397_17395 PF12833 Helix-turn-helix domain KC397_17415 PF00155 Aminotransferase class I and II KC397_17425 PF16326 ABC transporter C-terminal domain KC397_17425 PF00005 ABC transporter KC397_17425 PF12848 ABC transporter KC397_17430 PF01418 Helix-turn-helix domain, rpiR family KC397_17430 PF01380 SIS domain KC397_17435 PF13580 SIS domain KC397_17440 PF02378 Phosphotransferase system, EIIC KC397_17440 PF00367 phosphotransferase system, EIIB KC397_17445 PF07690 Major Facilitator Superfamily KC397_17460 PF02129 X-Pro dipeptidyl-peptidase (S15 family) KC397_17465 PF00486 Transcriptional regulatory protein, C terminal KC397_17495 PF00155 Aminotransferase class I and II KC397_17500 PF12833 Helix-turn-helix domain KC397_17500 PF02311 AraC-like ligand binding domain KC397_17505 PF01625 Peptide methionine sulfoxide reductase KC397_17505 PF01641 SelR domain KC397_17510 PF00860 Permease family KC397_17520 PF01177 Asp/Glu/Hydantoin racemase KC397_17530 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KC397_17540 PF00528 Binding-protein-dependent transport system inner membrane component KC397_17545 PF00528 Binding-protein-dependent transport system inner membrane component KC397_17550 PF00005 ABC transporter KC397_17560 PF13593 SBF-like CPA transporter family (DUF4137) KC397_17565 PF01425 Amidase KC397_17575 PF00266 Aminotransferase class-V KC397_17580 PF07687 Peptidase dimerisation domain KC397_17580 PF01546 Peptidase family M20/M25/M40 KC397_17600 PF01979 Amidohydrolase family KC397_17605 PF00576 HIUase/Transthyretin family KC397_17610 PF09349 OHCU decarboxylase KC397_17610 PF01014 Uricase KC397_17625 PF00111 2Fe-2S iron-sulfur cluster binding domain KC397_17625 PF01799 [2Fe-2S] binding domain KC397_17630 PF02608 ABC transporter substrate-binding protein PnrA-like KC397_17635 PF02653 Branched-chain amino acid transport system / permease component KC397_17640 PF02653 Branched-chain amino acid transport system / permease component KC397_17645 PF00005 ABC transporter KC397_17650 PF00440 Bacterial regulatory proteins, tetR family KC397_17650 PF08362 YcdC-like protein, C-terminal region KC397_17660 PF00990 Diguanylate cyclase, GGDEF domain KC397_17670 PF00990 Diguanylate cyclase, GGDEF domain KC397_17685 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KC397_17685 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KC397_17685 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KC397_17690 PF02233 NAD(P) transhydrogenase beta subunit KC397_17700 PF00072 Response regulator receiver domain KC397_17700 PF00486 Transcriptional regulatory protein, C terminal KC397_17715 PF03701 Uncharacterised protein family (UPF0181) KC397_17720 PF01253 Translation initiation factor SUI1 KC397_17735 PF07478 D-ala D-ala ligase C-terminus KC397_17735 PF01820 D-ala D-ala ligase N-terminus KC397_17745 PF00583 Acetyltransferase (GNAT) family KC397_17745 PF13607 Succinyl-CoA ligase like flavodoxin domain KC397_17745 PF13380 CoA binding domain KC397_17750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_17750 PF03466 LysR substrate binding domain KC397_17755 PF07715 TonB-dependent Receptor Plug Domain KC397_17755 PF00593 TonB dependent receptor KC397_17765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KC397_17765 PF12793 Sugar transport-related sRNA regulator N-term KC397_17775 PF03061 Thioesterase superfamily KC397_17785 PF03831 PhnA domain KC397_17785 PF08274 PhnA Zinc-Ribbon KC397_17795 PF03741 Integral membrane protein TerC family KC397_17800 PF02872 5'-nucleotidase, C-terminal domain KC397_17800 PF00149 Calcineurin-like phosphoesterase KC397_17805 PF11398 Protein of unknown function (DUF2813) KC397_17810 PF06496 Protein of unknown function (DUF1097) KC397_17815 PF03466 LysR substrate binding domain KC397_17815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_17820 PF01226 Formate/nitrite transporter KC397_17825 PF04264 YceI-like domain KC397_17830 PF01292 Prokaryotic cytochrome b561 KC397_17855 PF13426 PAS domain KC397_17855 PF00990 Diguanylate cyclase, GGDEF domain KC397_17855 PF00563 EAL domain KC397_17865 PF00384 Molybdopterin oxidoreductase KC397_17870 PF02634 FdhD/NarQ family KC397_17875 PF00970 Oxidoreductase FAD-binding domain KC397_17875 PF00111 2Fe-2S iron-sulfur cluster binding domain KC397_17875 PF00175 Oxidoreductase NAD-binding domain KC397_17885 PF00072 Response regulator receiver domain KC397_17895 PF02311 AraC-like ligand binding domain KC397_17895 PF12833 Helix-turn-helix domain KC397_17900 PF01926 50S ribosome-binding GTPase KC397_17905 PF02492 CobW/HypB/UreG, nucleotide-binding domain KC397_17905 PF07683 Cobalamin synthesis protein cobW C-terminal domain KC397_17910 PF00654 Voltage gated chloride channel KC397_17920 PF00155 Aminotransferase class I and II KC397_17925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_17925 PF00072 Response regulator receiver domain KC397_17930 PF13476 AAA domain KC397_17935 PF00149 Calcineurin-like phosphoesterase KC397_17935 PF12320 Type 5 capsule protein repressor C-terminal domain KC397_17940 PF00356 Bacterial regulatory proteins, lacI family KC397_17940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KC397_17945 PF00381 PTS HPr component phosphorylation site KC397_17945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KC397_17950 PF00294 pfkB family carbohydrate kinase KC397_17955 PF02378 Phosphotransferase system, EIIC KC397_17955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KC397_17960 PF18030 RimK PreATP-grasp domain KC397_17960 PF08443 RimK-like ATP-grasp domain KC397_17965 PF00155 Aminotransferase class I and II KC397_17975 PF03477 ATP cone domain KC397_17975 PF13597 Anaerobic ribonucleoside-triphosphate reductase KC397_17985 PF00873 AcrB/AcrD/AcrF family KC397_17990 PF00529 HlyD membrane-fusion protein of T1SS KC397_17990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_18000 PF04143 Sulphur transport KC397_18015 PF07992 Pyridine nucleotide-disulphide oxidoreductase KC397_18015 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KC397_18025 PF03466 LysR substrate binding domain KC397_18025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_18030 PF01810 LysE type translocator KC397_18035 PF00072 Response regulator receiver domain KC397_18035 PF00486 Transcriptional regulatory protein, C terminal KC397_18045 PF01266 FAD dependent oxidoreductase KC397_18045 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KC397_18055 PF03466 LysR substrate binding domain KC397_18055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_18070 PF00440 Bacterial regulatory proteins, tetR family KC397_18075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KC397_18075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KC397_18080 PF01596 O-methyltransferase KC397_18090 PF01810 LysE type translocator KC397_18105 PF00857 Isochorismatase family KC397_18110 PF01965 DJ-1/PfpI family KC397_18110 PF12833 Helix-turn-helix domain KC397_18115 PF00583 Acetyltransferase (GNAT) family KC397_18125 PF01810 LysE type translocator KC397_18130 PF00293 NUDIX domain KC397_18135 PF06942 GlpM protein KC397_18140 PF02272 DHHA1 domain KC397_18140 PF01411 tRNA synthetases class II (A) KC397_18140 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KC397_18155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KC397_18170 PF13419 Haloacid dehalogenase-like hydrolase KC397_18175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KC397_18195 PF01928 CYTH domain KC397_18200 PF00583 Acetyltransferase (GNAT) family KC397_18235 PF13649 Methyltransferase domain KC397_18245 PF00462 Glutaredoxin KC397_18245 PF08534 Redoxin KC397_18250 PF00892 EamA-like transporter family KC397_18260 PF02627 Carboxymuconolactone decarboxylase family KC397_18265 PF13411 MerR HTH family regulatory protein KC397_18335 PF09905 DNA-binding protein VF530 KC397_18355 PF03239 Iron permease FTR1 family KC397_18360 PF00453 Ribosomal protein L20 KC397_18365 PF01632 Ribosomal protein L35 KC397_18370 PF00707 Translation initiation factor IF-3, C-terminal domain KC397_18370 PF05198 Translation initiation factor IF-3, N-terminal domain KC397_18375 PF03129 Anticodon binding domain KC397_18375 PF02824 TGS domain KC397_18375 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KC397_18375 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KC397_18380 PF03880 DbpA RNA binding domain KC397_18380 PF00270 DEAD/DEAH box helicase KC397_18380 PF00271 Helicase conserved C-terminal domain KC397_18385 PF08206 Ribonuclease B OB domain KC397_18385 PF00773 RNB domain KC397_18385 PF00575 S1 RNA binding domain KC397_18395 PF12849 PBP superfamily domain KC397_18400 PF01575 MaoC like domain KC397_18405 PF03466 LysR substrate binding domain KC397_18405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_18410 PF00709 Adenylosuccinate synthetase KC397_18430 PF00529 HlyD membrane-fusion protein of T1SS KC397_18430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_18445 PF02321 Outer membrane efflux protein KC397_18455 PF00664 ABC transporter transmembrane region KC397_18455 PF00005 ABC transporter KC397_18470 PF14864 Alkyl sulfatase C-terminal KC397_18470 PF14863 Alkyl sulfatase dimerisation KC397_18470 PF00753 Metallo-beta-lactamase superfamily KC397_18475 PF00156 Phosphoribosyl transferase domain KC397_18480 PF08220 DeoR-like helix-turn-helix domain KC397_18480 PF00455 DeoR C terminal sensor domain KC397_18485 PF12464 Maltose acetyltransferase KC397_18485 PF14602 Hexapeptide repeat of succinyl-transferase KC397_18490 PF00990 Diguanylate cyclase, GGDEF domain KC397_18490 PF17158 Membrane-associated sensor, integral membrane domain KC397_18495 PF12729 Four helix bundle sensory module for signal transduction KC397_18495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_18495 PF00672 HAMP domain KC397_18500 PF00797 N-acetyltransferase KC397_18505 PF01168 Alanine racemase, N-terminal domain KC397_18505 PF00842 Alanine racemase, C-terminal domain KC397_18515 PF00528 Binding-protein-dependent transport system inner membrane component KC397_18515 PF12911 N-terminal TM domain of oligopeptide transport permease C KC397_18520 PF00528 Binding-protein-dependent transport system inner membrane component KC397_18525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KC397_18530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KC397_18530 PF00005 ABC transporter KC397_18535 PF03466 LysR substrate binding domain KC397_18535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_18540 PF00072 Response regulator receiver domain KC397_18545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_18545 PF00512 His Kinase A (phospho-acceptor) domain KC397_18545 PF01627 Hpt domain KC397_18545 PF00072 Response regulator receiver domain KC397_18555 PF01975 Survival protein SurE KC397_18575 PF08281 Sigma-70, region 4 KC397_18575 PF04542 Sigma-70 region 2 KC397_18590 PF03476 MOSC N-terminal beta barrel domain KC397_18590 PF03473 MOSC domain KC397_18590 PF00111 2Fe-2S iron-sulfur cluster binding domain KC397_18595 PF04794 YdjC-like protein KC397_18600 PF03466 LysR substrate binding domain KC397_18600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_18605 PF12833 Helix-turn-helix domain KC397_18610 PF03807 NADP oxidoreductase coenzyme F420-dependent KC397_18610 PF14748 Pyrroline-5-carboxylate reductase dimerisation KC397_18615 PF03480 Bacterial extracellular solute-binding protein, family 7 KC397_18625 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KC397_18630 PF02423 Ornithine cyclodeaminase/mu-crystallin family KC397_18640 PF00474 Sodium:solute symporter family KC397_18645 PF03466 LysR substrate binding domain KC397_18645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_18650 PF13409 Glutathione S-transferase, N-terminal domain KC397_18655 PF02230 Phospholipase/Carboxylesterase KC397_18660 PF01810 LysE type translocator KC397_18675 PF01546 Peptidase family M20/M25/M40 KC397_18675 PF07687 Peptidase dimerisation domain KC397_18680 PF03466 LysR substrate binding domain KC397_18680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_18685 PF07690 Major Facilitator Superfamily KC397_18690 PF00005 ABC transporter KC397_18695 PF01032 FecCD transport family KC397_18700 PF01497 Periplasmic binding protein KC397_18705 PF03480 Bacterial extracellular solute-binding protein, family 7 KC397_18710 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KC397_18715 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KC397_18720 PF02614 Glucuronate isomerase KC397_18725 PF01232 Mannitol dehydrogenase Rossmann domain KC397_18725 PF08125 Mannitol dehydrogenase C-terminal domain KC397_18730 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus KC397_18730 PF08666 SAF domain KC397_18735 PF00392 Bacterial regulatory proteins, gntR family KC397_18735 PF07729 FCD domain KC397_18755 PF00676 Dehydrogenase E1 component KC397_18760 PF02779 Transketolase, pyrimidine binding domain KC397_18760 PF02780 Transketolase, C-terminal domain KC397_18765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KC397_18765 PF00364 Biotin-requiring enzyme KC397_18765 PF02817 e3 binding domain KC397_18770 PF01740 STAS domain KC397_18795 PF00072 Response regulator receiver domain KC397_18795 PF01627 Hpt domain KC397_18795 PF00512 His Kinase A (phospho-acceptor) domain KC397_18795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_18800 PF02954 Bacterial regulatory protein, Fis family KC397_18800 PF00072 Response regulator receiver domain KC397_18800 PF00158 Sigma-54 interaction domain KC397_18805 PF00534 Glycosyl transferases group 1 KC397_18805 PF13439 Glycosyltransferase Family 4 KC397_18825 PF12464 Maltose acetyltransferase KC397_18825 PF14602 Hexapeptide repeat of succinyl-transferase KC397_18825 PF00132 Bacterial transferase hexapeptide (six repeats) KC397_18840 PF13439 Glycosyltransferase Family 4 KC397_18840 PF00534 Glycosyl transferases group 1 KC397_18850 PF02397 Bacterial sugar transferase KC397_18855 PF00534 Glycosyl transferases group 1 KC397_18855 PF13439 Glycosyltransferase Family 4 KC397_18865 PF01012 Electron transfer flavoprotein domain KC397_18865 PF00766 Electron transfer flavoprotein FAD-binding domain KC397_18870 PF01012 Electron transfer flavoprotein domain KC397_18880 PF02798 Glutathione S-transferase, N-terminal domain KC397_18890 PF01915 Glycosyl hydrolase family 3 C-terminal domain KC397_18890 PF00933 Glycosyl hydrolase family 3 N terminal domain KC397_18890 PF14310 Fibronectin type III-like domain KC397_18900 PF00005 ABC transporter KC397_18905 PF00528 Binding-protein-dependent transport system inner membrane component KC397_18910 PF00528 Binding-protein-dependent transport system inner membrane component KC397_18915 PF12849 PBP superfamily domain KC397_18925 PF02311 AraC-like ligand binding domain KC397_18925 PF12833 Helix-turn-helix domain KC397_18935 PF03180 NLPA lipoprotein KC397_18940 PF00425 chorismate binding enzyme KC397_18940 PF00117 Glutamine amidotransferase class-I KC397_18940 PF04715 Anthranilate synthase component I, N terminal region KC397_18945 PF03466 LysR substrate binding domain KC397_18945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_18950 PF00196 Bacterial regulatory proteins, luxR family KC397_18950 PF00072 Response regulator receiver domain KC397_18955 PF07730 Histidine kinase KC397_18955 PF17200 Single Cache domain 2 KC397_18960 PF03480 Bacterial extracellular solute-binding protein, family 7 KC397_18970 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KC397_18975 PF02810 SEC-C motif KC397_18975 PF07517 SecA DEAD-like domain KC397_18975 PF01043 SecA preprotein cross-linking domain KC397_18975 PF07516 SecA Wing and Scaffold domain KC397_19010 PF01144 Coenzyme A transferase KC397_19020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KC397_19020 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KC397_19025 PF00378 Enoyl-CoA hydratase/isomerase KC397_19030 PF00378 Enoyl-CoA hydratase/isomerase KC397_19035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KC397_19035 PF02770 Acyl-CoA dehydrogenase, middle domain KC397_19035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KC397_19040 PF00171 Aldehyde dehydrogenase family KC397_19045 PF00108 Thiolase, N-terminal domain KC397_19045 PF02803 Thiolase, C-terminal domain KC397_19050 PF09278 MerR, DNA binding KC397_19050 PF00376 MerR family regulatory protein KC397_19055 PF02770 Acyl-CoA dehydrogenase, middle domain KC397_19055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KC397_19055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KC397_19060 PF01039 Carboxyl transferase domain KC397_19065 PF00378 Enoyl-CoA hydratase/isomerase KC397_19070 PF00682 HMGL-like KC397_19080 PF10417 C-terminal domain of 1-Cys peroxiredoxin KC397_19080 PF00578 AhpC/TSA family KC397_19085 PF13192 Thioredoxin domain KC397_19085 PF07992 Pyridine nucleotide-disulphide oxidoreductase KC397_19090 PF01979 Amidohydrolase family KC397_19105 PF00561 alpha/beta hydrolase fold KC397_19115 PF12833 Helix-turn-helix domain KC397_19120 PF00465 Iron-containing alcohol dehydrogenase KC397_19125 PF01966 HD domain KC397_19140 PF00300 Histidine phosphatase superfamily (branch 1) KC397_19160 PF00871 Acetokinase family KC397_19170 PF07715 TonB-dependent Receptor Plug Domain KC397_19170 PF00593 TonB dependent receptor KC397_19175 PF06445 GyrI-like small molecule binding domain KC397_19175 PF12833 Helix-turn-helix domain KC397_19180 PF00005 ABC transporter KC397_19185 PF01032 FecCD transport family KC397_19190 PF01032 FecCD transport family KC397_19195 PF01497 Periplasmic binding protein KC397_19210 PF00801 PKD domain KC397_19210 PF05547 Immune inhibitor A peptidase M6 KC397_19215 PF03280 Proteobacterial lipase chaperone protein KC397_19220 PF00561 alpha/beta hydrolase fold KC397_19225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_19225 PF00672 HAMP domain KC397_19230 PF13404 AsnC-type helix-turn-helix domain KC397_19230 PF01037 Lrp/AsnC ligand binding domain KC397_19250 PF07690 Major Facilitator Superfamily KC397_19260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_19260 PF00672 HAMP domain KC397_19260 PF12729 Four helix bundle sensory module for signal transduction KC397_19275 PF02540 NAD synthase KC397_19280 PF03605 Anaerobic c4-dicarboxylate membrane transporter KC397_19285 PF04397 LytTr DNA-binding domain KC397_19285 PF00072 Response regulator receiver domain KC397_19290 PF07694 5TMR of 5TMR-LYT KC397_19290 PF06580 Histidine kinase KC397_19295 PF00248 Aldo/keto reductase family KC397_19310 PF00128 Alpha amylase, catalytic domain KC397_19315 PF07504 Fungalysin/Thermolysin Propeptide Motif KC397_19315 PF03413 Peptidase propeptide and YPEB domain KC397_19315 PF01447 Thermolysin metallopeptidase, catalytic domain KC397_19315 PF02868 Thermolysin metallopeptidase, alpha-helical domain KC397_19315 PF04151 Bacterial pre-peptidase C-terminal domain KC397_19320 PF03922 OmpW family KC397_19325 PF00011 Hsp20/alpha crystallin family KC397_19335 PF01042 Endoribonuclease L-PSP KC397_19345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_19345 PF03466 LysR substrate binding domain KC397_19350 PF00561 alpha/beta hydrolase fold KC397_19350 PF08386 TAP-like protein KC397_19360 PF00664 ABC transporter transmembrane region KC397_19360 PF00005 ABC transporter KC397_19365 PF00664 ABC transporter transmembrane region KC397_19365 PF00005 ABC transporter KC397_19375 PF12792 CSS motif domain associated with EAL KC397_19375 PF00563 EAL domain KC397_19380 PF04138 GtrA-like protein KC397_19390 PF00912 Transglycosylase KC397_19400 PF01327 Polypeptide deformylase KC397_19410 PF00155 Aminotransferase class I and II KC397_19410 PF00392 Bacterial regulatory proteins, gntR family KC397_19415 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KC397_19415 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KC397_19420 PF01925 Sulfite exporter TauE/SafE KC397_19425 PF17848 Acetyl-coA carboxylase zinc finger domain KC397_19425 PF01039 Carboxyl transferase domain KC397_19430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_19430 PF03466 LysR substrate binding domain KC397_19455 PF00483 Nucleotidyl transferase KC397_19460 PF12167 Arm DNA-binding domain KC397_19460 PF00589 Phage integrase family KC397_19470 PF00313 'Cold-shock' DNA-binding domain KC397_19475 PF00330 Aconitase family (aconitate hydratase) KC397_19475 PF00694 Aconitase C-terminal domain KC397_19490 PF00107 Zinc-binding dehydrogenase KC397_19490 PF08240 Alcohol dehydrogenase GroES-like domain KC397_19495 PF00155 Aminotransferase class I and II KC397_19500 PF00171 Aldehyde dehydrogenase family KC397_19505 PF02954 Bacterial regulatory protein, Fis family KC397_19505 PF01590 GAF domain KC397_19505 PF00158 Sigma-54 interaction domain KC397_19510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_19510 PF03466 LysR substrate binding domain KC397_19515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KC397_19545 PF01966 HD domain KC397_19550 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KC397_19550 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KC397_19555 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KC397_19560 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KC397_19560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KC397_19570 PF00672 HAMP domain KC397_19570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_19570 PF02743 Cache domain KC397_19575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_19575 PF03466 LysR substrate binding domain KC397_19590 PF02310 B12 binding domain KC397_19590 PF02965 Vitamin B12 dependent methionine synthase, activation domain KC397_19590 PF00809 Pterin binding enzyme KC397_19590 PF02574 Homocysteine S-methyltransferase KC397_19590 PF02607 B12 binding domain KC397_19595 PF13520 Amino acid permease KC397_19605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_19605 PF03466 LysR substrate binding domain KC397_19610 PF07687 Peptidase dimerisation domain KC397_19610 PF01546 Peptidase family M20/M25/M40 KC397_19615 PF03806 AbgT putative transporter family KC397_19620 PF02595 Glycerate kinase family KC397_19625 PF02447 GntP family permease KC397_19630 PF05651 Putative sugar diacid recognition KC397_19630 PF17853 GGDEF-like domain KC397_19630 PF13556 PucR C-terminal helix-turn-helix domain KC397_19635 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KC397_19635 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KC397_19640 PF12793 Sugar transport-related sRNA regulator N-term KC397_19640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KC397_19655 PF00672 HAMP domain KC397_19655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_19655 PF02743 Cache domain KC397_19665 PF02743 Cache domain KC397_19665 PF00672 HAMP domain KC397_19665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_19670 PF00375 Sodium:dicarboxylate symporter family KC397_19675 PF01042 Endoribonuclease L-PSP KC397_19710 PF13629 Pilus formation protein N terminal region KC397_19710 PF00263 Bacterial type II and III secretion system protein KC397_19710 PF04972 BON domain KC397_19715 PF00437 Type II/IV secretion system protein KC397_19745 PF03960 ArsC family KC397_19750 PF01758 Sodium Bile acid symporter family KC397_19765 PF00478 IMP dehydrogenase / GMP reductase domain KC397_19775 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KC397_19775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KC397_19780 PF01256 Carbohydrate kinase KC397_19780 PF03853 YjeF-related protein N-terminus KC397_19790 PF00072 Response regulator receiver domain KC397_19790 PF00486 Transcriptional regulatory protein, C terminal KC397_19810 PF03889 Alternative ribosome-rescue factor A KC397_19815 PF00313 'Cold-shock' DNA-binding domain KC397_19820 PF07152 YaeQ protein KC397_19825 PF00990 Diguanylate cyclase, GGDEF domain KC397_19830 PF00175 Oxidoreductase NAD-binding domain KC397_19830 PF00042 Globin KC397_19830 PF00970 Oxidoreductase FAD-binding domain KC397_19835 PF00158 Sigma-54 interaction domain KC397_19835 PF01590 GAF domain KC397_19845 PF01546 Peptidase family M20/M25/M40 KC397_19845 PF07687 Peptidase dimerisation domain KC397_19850 PF07662 Na+ dependent nucleoside transporter C-terminus KC397_19850 PF07670 Nucleoside recognition KC397_19850 PF01773 Na+ dependent nucleoside transporter N-terminus KC397_19860 PF00128 Alpha amylase, catalytic domain KC397_19875 PF00672 HAMP domain KC397_19875 PF02743 Cache domain KC397_19875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_19880 PF17863 AAA lid domain KC397_19880 PF07726 ATPase family associated with various cellular activities (AAA) KC397_19885 PF01882 Protein of unknown function DUF58 KC397_19900 PF13519 von Willebrand factor type A domain KC397_19900 PF07584 Aerotolerance regulator N-terminal KC397_19915 PF17158 Membrane-associated sensor, integral membrane domain KC397_19915 PF00990 Diguanylate cyclase, GGDEF domain KC397_19925 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KC397_19925 PF00072 Response regulator receiver domain KC397_19925 PF01627 Hpt domain KC397_19925 PF00512 His Kinase A (phospho-acceptor) domain KC397_19925 PF00672 HAMP domain KC397_19925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_19930 PF00990 Diguanylate cyclase, GGDEF domain KC397_19930 PF00072 Response regulator receiver domain KC397_19935 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KC397_19940 PF04996 Succinylarginine dihydrolase KC397_19945 PF00171 Aldehyde dehydrogenase family KC397_19950 PF04958 Arginine N-succinyltransferase beta subunit KC397_19955 PF04958 Arginine N-succinyltransferase beta subunit KC397_19960 PF00202 Aminotransferase class-III KC397_19965 PF12833 Helix-turn-helix domain KC397_19970 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KC397_19970 PF13378 Enolase C-terminal domain-like KC397_19980 PF00528 Binding-protein-dependent transport system inner membrane component KC397_19985 PF00528 Binding-protein-dependent transport system inner membrane component KC397_19990 PF00497 Bacterial extracellular solute-binding proteins, family 3 KC397_19995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_19995 PF03466 LysR substrate binding domain KC397_20020 PF04320 Protein with unknown function (DUF469) KC397_20025 PF00582 Universal stress protein family KC397_20030 PF00472 RF-1 domain KC397_20035 PF12843 Putative quorum-sensing-regulated virulence factor KC397_20045 PF01266 FAD dependent oxidoreductase KC397_20060 PF02954 Bacterial regulatory protein, Fis family KC397_20060 PF00072 Response regulator receiver domain KC397_20060 PF00158 Sigma-54 interaction domain KC397_20065 PF01238 Phosphomannose isomerase type I KC397_20070 PF02595 Glycerate kinase family KC397_20075 PF07748 Glycosyl hydrolases family 38 C-terminal domain KC397_20075 PF09261 Alpha mannosidase middle domain KC397_20075 PF01074 Glycosyl hydrolases family 38 N-terminal domain KC397_20080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KC397_20080 PF02378 Phosphotransferase system, EIIC KC397_20080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KC397_20085 PF00392 Bacterial regulatory proteins, gntR family KC397_20085 PF07702 UTRA domain KC397_20090 PF02743 Cache domain KC397_20090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_20090 PF00512 His Kinase A (phospho-acceptor) domain KC397_20105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_20105 PF00672 HAMP domain KC397_20105 PF12729 Four helix bundle sensory module for signal transduction KC397_20110 PF00990 Diguanylate cyclase, GGDEF domain KC397_20110 PF03707 Bacterial signalling protein N terminal repeat KC397_20110 PF13188 PAS domain KC397_20110 PF00563 EAL domain KC397_20115 PF07690 Major Facilitator Superfamily KC397_20120 PF03009 Glycerophosphoryl diester phosphodiesterase family KC397_20125 PF01048 Phosphorylase superfamily KC397_20130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_20130 PF03466 LysR substrate binding domain KC397_20135 PF00356 Bacterial regulatory proteins, lacI family KC397_20140 PF00294 pfkB family carbohydrate kinase KC397_20145 PF13407 Periplasmic binding protein domain KC397_20150 PF02653 Branched-chain amino acid transport system / permease component KC397_20155 PF00005 ABC transporter KC397_20160 PF05025 RbsD / FucU transport protein family KC397_20180 PF04717 Type VI secretion system, phage-baseplate injector KC397_20180 PF01471 Putative peptidoglycan binding domain KC397_20190 PF14331 ImcF-related N-terminal domain KC397_20190 PF06761 Intracellular multiplication and human macrophage-killing KC397_20190 PF06744 Type VI secretion protein IcmF C-terminal KC397_20205 PF02954 Bacterial regulatory protein, Fis family KC397_20205 PF00158 Sigma-54 interaction domain KC397_20210 PF00004 ATPase family associated with various cellular activities (AAA) KC397_20210 PF07724 AAA domain (Cdc48 subfamily) KC397_20210 PF10431 C-terminal, D2-small domain, of ClpB protein KC397_20210 PF17871 AAA lid domain KC397_20220 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KC397_20240 PF05947 Type VI secretion system, TssF KC397_20250 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KC397_20270 PF01037 Lrp/AsnC ligand binding domain KC397_20275 PF01810 LysE type translocator KC397_20280 PF01047 MarR family KC397_20285 PF01545 Cation efflux family KC397_20290 PF00892 EamA-like transporter family KC397_20295 PF00849 RNA pseudouridylate synthase KC397_20300 PF16925 Tetracyclin repressor-like, C-terminal domain KC397_20300 PF00440 Bacterial regulatory proteins, tetR family KC397_20305 PF16884 N-terminal domain of oxidoreductase KC397_20305 PF00107 Zinc-binding dehydrogenase KC397_20315 PF01740 STAS domain KC397_20315 PF00916 Sulfate permease family KC397_20320 PF13419 Haloacid dehalogenase-like hydrolase KC397_20325 PF07702 UTRA domain KC397_20325 PF00392 Bacterial regulatory proteins, gntR family KC397_20330 PF01547 Bacterial extracellular solute-binding protein KC397_20350 PF00005 ABC transporter KC397_20350 PF08402 TOBE domain KC397_20360 PF12792 CSS motif domain associated with EAL KC397_20360 PF00563 EAL domain KC397_20365 PF00248 Aldo/keto reductase family KC397_20370 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KC397_20375 PF03466 LysR substrate binding domain KC397_20375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_20380 PF07690 Major Facilitator Superfamily KC397_20400 PF00581 Rhodanese-like domain KC397_20410 PF00196 Bacterial regulatory proteins, luxR family KC397_20415 PF01479 S4 domain KC397_20415 PF00579 tRNA synthetases class I (W and Y) KC397_20420 PF13649 Methyltransferase domain KC397_20425 PF03928 Haem-degrading KC397_20430 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KC397_20430 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KC397_20435 PF00455 DeoR C terminal sensor domain KC397_20435 PF08220 DeoR-like helix-turn-helix domain KC397_20440 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KC397_20440 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KC397_20455 PF07968 Leukocidin/Hemolysin toxin family KC397_20455 PF16458 Beta-prism lectin KC397_20455 PF12563 Hemolytic toxin N terminal KC397_20460 PF00657 GDSL-like Lipase/Acylhydrolase KC397_20470 PF03466 LysR substrate binding domain KC397_20470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_20480 PF00005 ABC transporter KC397_20485 PF01032 FecCD transport family KC397_20490 PF01032 FecCD transport family KC397_20495 PF01497 Periplasmic binding protein KC397_20500 PF00593 TonB dependent receptor KC397_20500 PF07715 TonB-dependent Receptor Plug Domain KC397_20525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_20525 PF00672 HAMP domain KC397_20530 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KC397_20535 PF03466 LysR substrate binding domain KC397_20535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_20545 PF02001 Protein of unknown function DUF134 KC397_20550 PF00881 Nitroreductase family KC397_20555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_20555 PF03466 LysR substrate binding domain KC397_20560 PF00155 Aminotransferase class I and II KC397_20565 PF00497 Bacterial extracellular solute-binding proteins, family 3 KC397_20570 PF00892 EamA-like transporter family KC397_20575 PF00462 Glutaredoxin KC397_20585 PF07690 Major Facilitator Superfamily KC397_20590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_20590 PF03466 LysR substrate binding domain KC397_20595 PF00990 Diguanylate cyclase, GGDEF domain KC397_20595 PF03707 Bacterial signalling protein N terminal repeat KC397_20595 PF00563 EAL domain KC397_20595 PF13188 PAS domain KC397_20600 PF01551 Peptidase family M23 KC397_20600 PF08525 Opacity-associated protein A N-terminal motif KC397_20600 PF01476 LysM domain KC397_20615 PF01740 STAS domain KC397_20615 PF00916 Sulfate permease family KC397_20620 PF07670 Nucleoside recognition KC397_20630 PF17152 Periplasmic sensor domain KC397_20630 PF00990 Diguanylate cyclase, GGDEF domain KC397_20635 PF00005 ABC transporter KC397_20640 PF00528 Binding-protein-dependent transport system inner membrane component KC397_20645 PF00528 Binding-protein-dependent transport system inner membrane component KC397_20650 PF12849 PBP superfamily domain KC397_20655 PF12729 Four helix bundle sensory module for signal transduction KC397_20655 PF00672 HAMP domain KC397_20655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_20660 PF00271 Helicase conserved C-terminal domain KC397_20660 PF00270 DEAD/DEAH box helicase KC397_20670 PF17969 L,D-transpeptidase C-terminal domain KC397_20670 PF01476 LysM domain KC397_20670 PF03734 L,D-transpeptidase catalytic domain KC397_20675 PF03441 FAD binding domain of DNA photolyase KC397_20675 PF00875 DNA photolyase KC397_20680 PF13411 MerR HTH family regulatory protein KC397_20685 PF08349 Protein of unknown function (DUF1722) KC397_20690 PF01048 Phosphorylase superfamily KC397_20705 PF00990 Diguanylate cyclase, GGDEF domain KC397_20710 PF11742 Protein of unknown function (DUF3302) KC397_20715 PF00529 HlyD membrane-fusion protein of T1SS KC397_20715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_20745 PF12945 Flagellar protein YcgR KC397_20745 PF07238 PilZ domain KC397_20750 PF03616 Sodium/glutamate symporter KC397_20765 PF02630 SCO1/SenC KC397_20775 PF03193 RsgA GTPase KC397_20780 PF00375 Sodium:dicarboxylate symporter family KC397_20790 PF07148 Maltose operon periplasmic protein precursor (MalM) KC397_20795 PF02264 LamB porin KC397_20800 PF00128 Alpha amylase, catalytic domain KC397_20800 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KC397_20810 PF00664 ABC transporter transmembrane region KC397_20810 PF00005 ABC transporter KC397_20820 PF01569 PAP2 superfamily KC397_20830 PF00384 Molybdopterin oxidoreductase KC397_20830 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KC397_20830 PF12838 4Fe-4S dicluster domain KC397_20830 PF01568 Molydopterin dinucleotide binding domain KC397_20830 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KC397_20845 PF00672 HAMP domain KC397_20845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_20845 PF17200 Single Cache domain 2 KC397_20855 PF00005 ABC transporter KC397_20860 PF07702 UTRA domain KC397_20860 PF00392 Bacterial regulatory proteins, gntR family KC397_20865 PF08329 Chitinase A, N-terminal domain KC397_20865 PF00704 Glycosyl hydrolases family 18 KC397_20870 PF01212 Beta-eliminating lyase KC397_20875 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KC397_20880 PF01966 HD domain KC397_20890 PF00939 Sodium:sulfate symporter transmembrane region KC397_20915 PF01124 MAPEG family KC397_20935 PF04717 Type VI secretion system, phage-baseplate injector KC397_20940 PF05638 Type VI secretion system effector, Hcp KC397_20945 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KC397_20945 PF02806 Alpha amylase, C-terminal all-beta domain KC397_20945 PF00128 Alpha amylase, catalytic domain KC397_20950 PF02446 4-alpha-glucanotransferase KC397_20955 PF00343 Carbohydrate phosphorylase KC397_20960 PF00196 Bacterial regulatory proteins, luxR family KC397_20960 PF17874 MalT-like TPR region KC397_20965 PF10928 Protein of unknown function (DUF2810) KC397_20970 PF01040 UbiA prenyltransferase family KC397_20975 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KC397_20980 PF00510 Cytochrome c oxidase subunit III KC397_20985 PF00115 Cytochrome C and Quinol oxidase polypeptide I KC397_20990 PF06481 COX Aromatic Rich Motif KC397_20990 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KC397_21000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_21000 PF00672 HAMP domain KC397_21000 PF17200 Single Cache domain 2 KC397_21005 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KC397_21005 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KC397_21010 PF03466 LysR substrate binding domain KC397_21010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_21020 PF01709 Transcriptional regulator KC397_21045 PF13614 AAA domain KC397_21045 PF18607 ParA helix turn helix domain KC397_21050 PF08775 ParB family KC397_21050 PF02195 ParB-like nuclease domain KC397_21055 PF13416 Bacterial extracellular solute-binding protein KC397_21060 PF13718 GNAT acetyltransferase 2 KC397_21060 PF05127 Helicase KC397_21070 PF00072 Response regulator receiver domain KC397_21075 PF02895 Signal transducing histidine kinase, homodimeric domain KC397_21075 PF01627 Hpt domain KC397_21075 PF09078 CheY binding KC397_21075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_21075 PF01584 CheW-like domain KC397_21080 PF01584 CheW-like domain KC397_21085 PF01584 CheW-like domain KC397_21090 PF02203 Tar ligand binding domain homologue KC397_21090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_21090 PF00672 HAMP domain KC397_21095 PF01739 CheR methyltransferase, SAM binding domain KC397_21095 PF03705 CheR methyltransferase, all-alpha domain KC397_21100 PF03975 CheD chemotactic sensory transduction KC397_21105 PF01339 CheB methylesterase KC397_21105 PF00072 Response regulator receiver domain KC397_21110 PF02743 Cache domain KC397_21110 PF00672 HAMP domain KC397_21110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_21120 PF00072 Response regulator receiver domain KC397_21120 PF00486 Transcriptional regulatory protein, C terminal KC397_21130 PF03412 Peptidase C39 family KC397_21130 PF00664 ABC transporter transmembrane region KC397_21130 PF00005 ABC transporter KC397_21145 PF00529 HlyD membrane-fusion protein of T1SS KC397_21150 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KC397_21150 PF01243 Pyridoxamine 5'-phosphate oxidase KC397_21155 PF00196 Bacterial regulatory proteins, luxR family KC397_21155 PF00072 Response regulator receiver domain KC397_21160 PF03781 Sulfatase-modifying factor enzyme 1 KC397_21170 PF12833 Helix-turn-helix domain KC397_21175 PF00171 Aldehyde dehydrogenase family KC397_21175 PF14850 DNA-binding domain of Proline dehydrogenase KC397_21175 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KC397_21175 PF01619 Proline dehydrogenase KC397_21185 PF00474 Sodium:solute symporter family KC397_21195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_21195 PF00672 HAMP domain KC397_21200 PF01037 Lrp/AsnC ligand binding domain KC397_21205 PF00171 Aldehyde dehydrogenase family KC397_21210 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KC397_21215 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KC397_21220 PF00270 DEAD/DEAH box helicase KC397_21220 PF00271 Helicase conserved C-terminal domain KC397_21225 PF07690 Major Facilitator Superfamily KC397_21230 PF03466 LysR substrate binding domain KC397_21230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_21235 PF08241 Methyltransferase domain KC397_21245 PF09278 MerR, DNA binding KC397_21245 PF00376 MerR family regulatory protein KC397_21250 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KC397_21255 PF00266 Aminotransferase class-V KC397_21260 PF01037 Lrp/AsnC ligand binding domain KC397_21265 PF02447 GntP family permease KC397_21270 PF01261 Xylose isomerase-like TIM barrel KC397_21275 PF00596 Class II Aldolase and Adducin N-terminal domain KC397_21280 PF07005 Sugar-binding N-terminal domain KC397_21280 PF17042 Nucleotide-binding C-terminal domain KC397_21285 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KC397_21285 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KC397_21290 PF08220 DeoR-like helix-turn-helix domain KC397_21290 PF00455 DeoR C terminal sensor domain KC397_21295 PF08447 PAS fold KC397_21295 PF13426 PAS domain KC397_21295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_21300 PF01266 FAD dependent oxidoreductase KC397_21305 PF03466 LysR substrate binding domain KC397_21305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_21310 PF13460 NAD(P)H-binding KC397_21315 PF00893 Small Multidrug Resistance protein KC397_21320 PF02311 AraC-like ligand binding domain KC397_21320 PF12833 Helix-turn-helix domain KC397_21325 PF00857 Isochorismatase family KC397_21330 PF12833 Helix-turn-helix domain KC397_21345 PF03992 Antibiotic biosynthesis monooxygenase KC397_21350 PF03733 Inner membrane component domain KC397_21360 PF00155 Aminotransferase class I and II KC397_21360 PF00392 Bacterial regulatory proteins, gntR family KC397_21385 PF01844 HNH endonuclease KC397_21400 PF13495 Phage integrase, N-terminal SAM-like domain KC397_21400 PF00589 Phage integrase family KC397_21415 PF02016 LD-carboxypeptidase N-terminal domain KC397_21415 PF17676 LD-carboxypeptidase C-terminal domain KC397_21440 PF00497 Bacterial extracellular solute-binding proteins, family 3 KC397_21455 PF00929 Exonuclease KC397_21455 PF02811 PHP domain KC397_21455 PF14579 Helix-hairpin-helix motif KC397_21455 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KC397_21455 PF07733 Bacterial DNA polymerase III alpha NTPase domain KC397_21475 PF00012 Hsp70 protein KC397_21480 PF10437 Bacterial lipoate protein ligase C-terminus KC397_21480 PF03099 Biotin/lipoate A/B protein ligase family KC397_21490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_21490 PF03466 LysR substrate binding domain KC397_21495 PF03806 AbgT putative transporter family KC397_21500 PF01546 Peptidase family M20/M25/M40 KC397_21500 PF07687 Peptidase dimerisation domain KC397_21510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KC397_21515 PF05068 Mannitol repressor KC397_21520 PF01232 Mannitol dehydrogenase Rossmann domain KC397_21520 PF08125 Mannitol dehydrogenase C-terminal domain KC397_21525 PF02378 Phosphotransferase system, EIIC KC397_21525 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KC397_21525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KC397_21530 PF01551 Peptidase family M23 KC397_21530 PF04225 Opacity-associated protein A LysM-like domain KC397_21540 PF02225 PA domain KC397_21540 PF04389 Peptidase family M28 KC397_21545 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KC397_21565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_21565 PF03466 LysR substrate binding domain KC397_21570 PF07969 Amidohydrolase family KC397_21575 PF07681 DoxX KC397_21580 PF06029 AlkA N-terminal domain KC397_21580 PF00730 HhH-GPD superfamily base excision DNA repair protein KC397_21585 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KC397_21585 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KC397_21595 PF03600 Citrate transporter KC397_21600 PF00375 Sodium:dicarboxylate symporter family KC397_21615 PF07883 Cupin domain KC397_21615 PF12833 Helix-turn-helix domain KC397_21625 PF00561 alpha/beta hydrolase fold KC397_21635 PF00529 HlyD membrane-fusion protein of T1SS KC397_21635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KC397_21640 PF01047 MarR family KC397_21650 PF02566 OsmC-like protein KC397_21655 PF01047 MarR family KC397_21660 PF01557 Fumarylacetoacetate (FAA) hydrolase family KC397_21680 PF01810 LysE type translocator KC397_21690 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KC397_21695 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KC397_21695 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KC397_21695 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KC397_21695 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KC397_21700 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KC397_21700 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KC397_21705 PF00115 Cytochrome C and Quinol oxidase polypeptide I KC397_21710 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 KC397_21715 PF00510 Cytochrome c oxidase subunit III KC397_21735 PF02628 Cytochrome oxidase assembly protein KC397_21740 PF01040 UbiA prenyltransferase family KC397_21745 PF12706 Beta-lactamase superfamily domain KC397_21755 PF00793 DAHP synthetase I family KC397_21760 PF01554 MatE KC397_21765 PF08448 PAS fold KC397_21765 PF13426 PAS domain KC397_21765 PF08447 PAS fold KC397_21765 PF05231 MASE1 KC397_21765 PF00990 Diguanylate cyclase, GGDEF domain KC397_21765 PF00563 EAL domain KC397_21785 PF12833 Helix-turn-helix domain KC397_21795 PF02567 Phenazine biosynthesis-like protein KC397_21805 PF00155 Aminotransferase class I and II KC397_21805 PF00392 Bacterial regulatory proteins, gntR family KC397_21810 PF00892 EamA-like transporter family KC397_21815 PF07690 Major Facilitator Superfamily KC397_21820 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KC397_21825 PF14497 Glutathione S-transferase, C-terminal domain KC397_21825 PF02798 Glutathione S-transferase, N-terminal domain KC397_21835 PF01361 Tautomerase enzyme KC397_21850 PF03466 LysR substrate binding domain KC397_21850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_21870 PF05656 Protein of unknown function (DUF805) KC397_21880 PF07977 FabA-like domain KC397_21885 PF00291 Pyridoxal-phosphate dependent enzyme KC397_21890 PF02627 Carboxymuconolactone decarboxylase family KC397_21900 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KC397_21900 PF00391 PEP-utilising enzyme, mobile domain KC397_21900 PF02896 PEP-utilising enzyme, TIM barrel domain KC397_21905 PF03618 Kinase/pyrophosphorylase KC397_21915 PF01070 FMN-dependent dehydrogenase KC397_21920 PF02652 L-lactate permease KC397_21925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_21925 PF03466 LysR substrate binding domain KC397_21930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KC397_21930 PF00005 ABC transporter KC397_21940 PF05362 Lon protease (S16) C-terminal proteolytic domain KC397_21940 PF13654 AAA domain KC397_21945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KC397_21945 PF00672 HAMP domain KC397_21945 PF12729 Four helix bundle sensory module for signal transduction KC397_21950 PF07690 Major Facilitator Superfamily KC397_21955 PF00924 Mechanosensitive ion channel KC397_21960 PF02254 TrkA-N domain KC397_21960 PF02080 TrkA-C domain KC397_21965 PF02386 Cation transport protein KC397_21975 PF06865 Pyrimidine/purine nucleoside phosphorylase KC397_21985 PF07690 Major Facilitator Superfamily KC397_21995 PF06715 Gp5 C-terminal repeat (3 copies) KC397_21995 PF04717 Type VI secretion system, phage-baseplate injector KC397_22030 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KC397_22055 PF10431 C-terminal, D2-small domain, of ClpB protein KC397_22055 PF17871 AAA lid domain KC397_22055 PF07724 AAA domain (Cdc48 subfamily) KC397_22055 PF00004 ATPase family associated with various cellular activities (AAA) KC397_22095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KC397_22095 PF00672 HAMP domain KC397_22095 PF00512 His Kinase A (phospho-acceptor) domain KC397_22100 PF00486 Transcriptional regulatory protein, C terminal KC397_22100 PF00072 Response regulator receiver domain KC397_22105 PF05726 Pirin C-terminal cupin domain KC397_22105 PF02678 Pirin KC397_22115 PF00990 Diguanylate cyclase, GGDEF domain KC397_22115 PF00563 EAL domain KC397_22120 PF03466 LysR substrate binding domain KC397_22120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KC397_22140 PF00990 Diguanylate cyclase, GGDEF domain KC397_22140 PF07694 5TMR of 5TMR-LYT KC397_22160 PF00990 Diguanylate cyclase, GGDEF domain KC397_22170 PF01047 MarR family KC397_22175 PF04237 YjbR KC397_22180 PF00072 Response regulator receiver domain KC397_22180 PF01584 CheW-like domain KC397_22195 PF14552 Tautomerase enzyme KC397_22210 PF00682 HMGL-like KC397_22210 PF08502 LeuA allosteric (dimerisation) domain KC397_22220 PF00440 Bacterial regulatory proteins, tetR family KC397_22225 PF00892 EamA-like transporter family KC397_22230 PF01037 Lrp/AsnC ligand binding domain KC397_22235 PF00196 Bacterial regulatory proteins, luxR family KC397_22240 PF01906 Putative heavy-metal-binding KC397_22245 PF14583 Oligogalacturonate lyase KC397_22250 PF00474 Sodium:solute symporter family KC397_22255 PF01554 MatE KC397_22260 PF06917 Periplasmic pectate lyase KC397_22265 PF13416 Bacterial extracellular solute-binding protein KC397_22270 PF00005 ABC transporter KC397_22270 PF17912 MalK OB fold domain KC397_22270 PF03459 TOBE domain KC397_22275 PF00528 Binding-protein-dependent transport system inner membrane component KC397_22280 PF00528 Binding-protein-dependent transport system inner membrane component KC397_22290 PF13229 Right handed beta helix region KC397_22295 PF01095 Pectinesterase KC397_22300 PF01081 KDPG and KHG aldolase KC397_22305 PF00294 pfkB family carbohydrate kinase KC397_22320 PF07883 Cupin domain KC397_22325 PF10688 Bacterial inner membrane protein KC397_22335 PF09339 IclR helix-turn-helix domain KC397_22335 PF01614 Bacterial transcriptional regulator KC397_22340 PF00571 CBS domain