locus-tag class description AL536_00005 PF14850 DNA-binding domain of Proline dehydrogenase AL536_00005 PF01619 Proline dehydrogenase AL536_00005 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL536_00005 PF00171 Aldehyde dehydrogenase family AL536_00015 PF00474 Sodium:solute symporter family AL536_00020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_00020 PF00672 HAMP domain AL536_00025 PF01037 Lrp/AsnC ligand binding domain AL536_00030 PF00171 Aldehyde dehydrogenase family AL536_00035 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL536_00040 PF00271 Helicase conserved C-terminal domain AL536_00040 PF00270 DEAD/DEAH box helicase AL536_00050 PF03466 LysR substrate binding domain AL536_00050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_00055 PF08241 Methyltransferase domain AL536_00065 PF00376 MerR family regulatory protein AL536_00065 PF09278 MerR, DNA binding AL536_00070 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AL536_00075 PF00266 Aminotransferase class-V AL536_00080 PF01037 Lrp/AsnC ligand binding domain AL536_00085 PF02447 GntP family permease AL536_00090 PF01261 Xylose isomerase-like TIM barrel AL536_00095 PF00596 Class II Aldolase and Adducin N-terminal domain AL536_00100 PF07005 Sugar-binding N-terminal domain AL536_00100 PF17042 Nucleotide-binding C-terminal domain AL536_00105 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL536_00105 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL536_00110 PF00455 DeoR C terminal sensor domain AL536_00110 PF08220 DeoR-like helix-turn-helix domain AL536_00115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_00115 PF08447 PAS fold AL536_00115 PF13426 PAS domain AL536_00120 PF01266 FAD dependent oxidoreductase AL536_00125 PF03466 LysR substrate binding domain AL536_00125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_00130 PF13460 NAD(P)H-binding AL536_00135 PF00893 Small Multidrug Resistance protein AL536_00140 PF12833 Helix-turn-helix domain AL536_00140 PF02311 AraC-like ligand binding domain AL536_00145 PF00857 Isochorismatase family AL536_00150 PF12833 Helix-turn-helix domain AL536_00150 PF02311 AraC-like ligand binding domain AL536_00165 PF03992 Antibiotic biosynthesis monooxygenase AL536_00170 PF03733 Inner membrane component domain AL536_00190 PF00392 Bacterial regulatory proteins, gntR family AL536_00190 PF00155 Aminotransferase class I and II AL536_00215 PF01844 HNH endonuclease AL536_00235 PF18113 Rubredoxin binding C-terminal domain AL536_00235 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_00250 PF00733 Asparagine synthase AL536_00250 PF13537 Glutamine amidotransferase domain AL536_00255 PF00291 Pyridoxal-phosphate dependent enzyme AL536_00280 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL536_00290 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL536_00290 PF00929 Exonuclease AL536_00290 PF02811 PHP domain AL536_00290 PF14579 Helix-hairpin-helix motif AL536_00290 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL536_00310 PF00012 Hsp70 protein AL536_00315 PF03099 Biotin/lipoate A/B protein ligase family AL536_00315 PF10437 Bacterial lipoate protein ligase C-terminus AL536_00325 PF03466 LysR substrate binding domain AL536_00325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_00330 PF03806 AbgT putative transporter family AL536_00335 PF07687 Peptidase dimerisation domain AL536_00335 PF01546 Peptidase family M20/M25/M40 AL536_00345 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL536_00350 PF05068 Mannitol repressor AL536_00355 PF08125 Mannitol dehydrogenase C-terminal domain AL536_00355 PF01232 Mannitol dehydrogenase Rossmann domain AL536_00360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL536_00360 PF02378 Phosphotransferase system, EIIC AL536_00360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL536_00365 PF01551 Peptidase family M23 AL536_00365 PF04225 Opacity-associated protein A LysM-like domain AL536_00375 PF04389 Peptidase family M28 AL536_00375 PF02225 PA domain AL536_00380 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL536_00400 PF03466 LysR substrate binding domain AL536_00400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_00405 PF07969 Amidohydrolase family AL536_00410 PF07681 DoxX AL536_00415 PF00730 HhH-GPD superfamily base excision DNA repair protein AL536_00415 PF06029 AlkA N-terminal domain AL536_00420 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL536_00420 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL536_00430 PF03600 Citrate transporter AL536_00435 PF00375 Sodium:dicarboxylate symporter family AL536_00455 PF07883 Cupin domain AL536_00455 PF12833 Helix-turn-helix domain AL536_00465 PF00561 alpha/beta hydrolase fold AL536_00475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL536_00475 PF00529 HlyD membrane-fusion protein of T1SS AL536_00480 PF01047 MarR family AL536_00490 PF02566 OsmC-like protein AL536_00495 PF01047 MarR family AL536_00500 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL536_00520 PF01810 LysE type translocator AL536_00530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL536_00535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL536_00535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL536_00535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL536_00535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL536_00540 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL536_00540 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AL536_00545 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL536_00550 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AL536_00555 PF00510 Cytochrome c oxidase subunit III AL536_00575 PF02628 Cytochrome oxidase assembly protein AL536_00580 PF01040 UbiA prenyltransferase family AL536_00585 PF12706 Beta-lactamase superfamily domain AL536_00595 PF00793 DAHP synthetase I family AL536_00600 PF01554 MatE AL536_00605 PF00563 EAL domain AL536_00605 PF05231 MASE1 AL536_00605 PF08447 PAS fold AL536_00605 PF08448 PAS fold AL536_00605 PF13426 PAS domain AL536_00605 PF00990 Diguanylate cyclase, GGDEF domain AL536_00625 PF12833 Helix-turn-helix domain AL536_00635 PF02567 Phenazine biosynthesis-like protein AL536_00645 PF00155 Aminotransferase class I and II AL536_00645 PF00392 Bacterial regulatory proteins, gntR family AL536_00650 PF00892 EamA-like transporter family AL536_00655 PF07274 Protein of unknown function (DUF1440) AL536_00660 PF07690 Major Facilitator Superfamily AL536_00665 PF02798 Glutathione S-transferase, N-terminal domain AL536_00665 PF14497 Glutathione S-transferase, C-terminal domain AL536_00675 PF01361 Tautomerase enzyme AL536_00690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_00690 PF03466 LysR substrate binding domain AL536_00710 PF05656 Protein of unknown function (DUF805) AL536_00720 PF07977 FabA-like domain AL536_00725 PF00291 Pyridoxal-phosphate dependent enzyme AL536_00730 PF02627 Carboxymuconolactone decarboxylase family AL536_00735 PF12833 Helix-turn-helix domain AL536_00740 PF02896 PEP-utilising enzyme, TIM barrel domain AL536_00740 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL536_00740 PF00391 PEP-utilising enzyme, mobile domain AL536_00745 PF03618 Kinase/pyrophosphorylase AL536_00755 PF01070 FMN-dependent dehydrogenase AL536_00760 PF02652 L-lactate permease AL536_00765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_00765 PF03466 LysR substrate binding domain AL536_00770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL536_00770 PF00005 ABC transporter AL536_00780 PF13654 AAA domain AL536_00780 PF05362 Lon protease (S16) C-terminal proteolytic domain AL536_00785 PF17200 Single Cache domain 2 AL536_00785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_00785 PF00672 HAMP domain AL536_00790 PF07690 Major Facilitator Superfamily AL536_00795 PF00924 Mechanosensitive ion channel AL536_00800 PF02254 TrkA-N domain AL536_00800 PF02080 TrkA-C domain AL536_00805 PF02386 Cation transport protein AL536_00815 PF06865 Pyrimidine/purine nucleoside phosphorylase AL536_00820 PF05726 Pirin C-terminal cupin domain AL536_00820 PF02678 Pirin AL536_00830 PF00563 EAL domain AL536_00830 PF00990 Diguanylate cyclase, GGDEF domain AL536_00835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_00835 PF03466 LysR substrate binding domain AL536_00855 PF07694 5TMR of 5TMR-LYT AL536_00855 PF00990 Diguanylate cyclase, GGDEF domain AL536_00875 PF00990 Diguanylate cyclase, GGDEF domain AL536_00885 PF01047 MarR family AL536_00890 PF04237 YjbR AL536_00895 PF01584 CheW-like domain AL536_00895 PF00072 Response regulator receiver domain AL536_00910 PF01548 Transposase AL536_00910 PF02371 Transposase IS116/IS110/IS902 family AL536_00915 PF14552 Tautomerase enzyme AL536_00935 PF08502 LeuA allosteric (dimerisation) domain AL536_00935 PF00682 HMGL-like AL536_00945 PF00440 Bacterial regulatory proteins, tetR family AL536_00950 PF00892 EamA-like transporter family AL536_00955 PF01037 Lrp/AsnC ligand binding domain AL536_00960 PF00196 Bacterial regulatory proteins, luxR family AL536_00965 PF01906 Putative heavy-metal-binding AL536_00970 PF14583 Oligogalacturonate lyase AL536_00975 PF00474 Sodium:solute symporter family AL536_00980 PF01554 MatE AL536_00985 PF06917 Periplasmic pectate lyase AL536_00990 PF13416 Bacterial extracellular solute-binding protein AL536_00995 PF00005 ABC transporter AL536_00995 PF17912 MalK OB fold domain AL536_00995 PF03459 TOBE domain AL536_01000 PF00528 Binding-protein-dependent transport system inner membrane component AL536_01005 PF00528 Binding-protein-dependent transport system inner membrane component AL536_01015 PF13229 Right handed beta helix region AL536_01020 PF01095 Pectinesterase AL536_01025 PF01081 KDPG and KHG aldolase AL536_01030 PF00294 pfkB family carbohydrate kinase AL536_01045 PF07883 Cupin domain AL536_01050 PF10688 Bacterial inner membrane protein AL536_01060 PF01614 Bacterial transcriptional regulator AL536_01060 PF09339 IclR helix-turn-helix domain AL536_01085 PF13302 Acetyltransferase (GNAT) domain AL536_01095 PF00392 Bacterial regulatory proteins, gntR family AL536_01095 PF00155 Aminotransferase class I and II AL536_01105 PF03783 Curli production assembly/transport component CsgG AL536_01110 PF10614 Type VIII secretion system (T8SS), CsgF protein AL536_01135 PF00005 ABC transporter AL536_01135 PF08402 TOBE domain AL536_01140 PF01547 Bacterial extracellular solute-binding protein AL536_01145 PF00528 Binding-protein-dependent transport system inner membrane component AL536_01145 PF14785 Maltose transport system permease protein MalF P2 domain AL536_01150 PF00528 Binding-protein-dependent transport system inner membrane component AL536_01165 PF00765 Autoinducer synthase AL536_01170 PF00196 Bacterial regulatory proteins, luxR family AL536_01170 PF03472 Autoinducer binding domain AL536_01175 PF08220 DeoR-like helix-turn-helix domain AL536_01175 PF00455 DeoR C terminal sensor domain AL536_01195 PF05661 Protein of unknown function (DUF808) AL536_01200 PF05958 tRNA (Uracil-5-)-methyltransferase AL536_01205 PF01979 Amidohydrolase family AL536_01215 PF03476 MOSC N-terminal beta barrel domain AL536_01215 PF00111 2Fe-2S iron-sulfur cluster binding domain AL536_01215 PF03473 MOSC domain AL536_01245 PF00005 ABC transporter AL536_01250 PF01032 FecCD transport family AL536_01260 PF02472 Biopolymer transport protein ExbD/TolR AL536_01265 PF01618 MotA/TolQ/ExbB proton channel family AL536_01270 PF03544 Gram-negative bacterial TonB protein C-terminal AL536_01275 PF06228 Haem utilisation ChuX/HutX AL536_01280 PF01243 Pyridoxamine 5'-phosphate oxidase AL536_01285 PF02743 Cache domain AL536_01285 PF00672 HAMP domain AL536_01285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_01290 PF13520 Amino acid permease AL536_01295 PF01037 Lrp/AsnC ligand binding domain AL536_01295 PF13404 AsnC-type helix-turn-helix domain AL536_01325 PF00111 2Fe-2S iron-sulfur cluster binding domain AL536_01325 PF00970 Oxidoreductase FAD-binding domain AL536_01325 PF00175 Oxidoreductase NAD-binding domain AL536_01330 PF12792 CSS motif domain associated with EAL AL536_01330 PF00563 EAL domain AL536_01340 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL536_01340 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL536_01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_01355 PF00672 HAMP domain AL536_01355 PF00512 His Kinase A (phospho-acceptor) domain AL536_01355 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL536_01355 PF00072 Response regulator receiver domain AL536_01355 PF01627 Hpt domain AL536_01360 PF00990 Diguanylate cyclase, GGDEF domain AL536_01360 PF03707 Bacterial signalling protein N terminal repeat AL536_01360 PF00563 EAL domain AL536_01365 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL536_01375 PF02566 OsmC-like protein AL536_01385 PF14602 Hexapeptide repeat of succinyl-transferase AL536_01385 PF00132 Bacterial transferase hexapeptide (six repeats) AL536_01385 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AL536_01390 PF00892 EamA-like transporter family AL536_01405 PF03466 LysR substrate binding domain AL536_01405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_01420 PF00501 AMP-binding enzyme AL536_01440 PF00072 Response regulator receiver domain AL536_01440 PF00486 Transcriptional regulatory protein, C terminal AL536_01445 PF00512 His Kinase A (phospho-acceptor) domain AL536_01445 PF08521 Two-component sensor kinase N-terminal AL536_01445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_01450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_01450 PF03466 LysR substrate binding domain AL536_01455 PF13193 AMP-binding enzyme C-terminal domain AL536_01455 PF00501 AMP-binding enzyme AL536_01460 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL536_01465 PF01329 Pterin 4 alpha carbinolamine dehydratase AL536_01470 PF01554 MatE AL536_01480 PF03741 Integral membrane protein TerC family AL536_01490 PF00583 Acetyltransferase (GNAT) family AL536_01495 PF00202 Aminotransferase class-III AL536_01500 PF06339 Ectoine synthase AL536_01505 PF13840 ACT domain AL536_01505 PF00696 Amino acid kinase family AL536_01520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_01520 PF03466 LysR substrate binding domain AL536_01530 PF11849 Domain of unknown function (DUF3369) AL536_01535 PF03707 Bacterial signalling protein N terminal repeat AL536_01535 PF00990 Diguanylate cyclase, GGDEF domain AL536_01535 PF00563 EAL domain AL536_01540 PF00490 Delta-aminolevulinic acid dehydratase AL536_01545 PF00118 TCP-1/cpn60 chaperonin family AL536_01550 PF00166 Chaperonin 10 Kd subunit AL536_01555 PF03448 MgtE intracellular N domain AL536_01555 PF01769 Divalent cation transporter AL536_01555 PF00571 CBS domain AL536_01565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_01565 PF00672 HAMP domain AL536_01565 PF02743 Cache domain AL536_01575 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL536_01580 PF00528 Binding-protein-dependent transport system inner membrane component AL536_01585 PF00571 CBS domain AL536_01585 PF00005 ABC transporter AL536_01595 PF17944 Arginine decarboxylase C-terminal helical extension AL536_01595 PF17810 Arginine decarboxylase helical bundle domain AL536_01595 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL536_01600 PF00491 Arginase family AL536_01605 PF01037 Lrp/AsnC ligand binding domain AL536_01610 PF01053 Cys/Met metabolism PLP-dependent enzyme AL536_01615 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL536_01620 PF00528 Binding-protein-dependent transport system inner membrane component AL536_01625 PF00005 ABC transporter AL536_01630 PF00768 D-alanyl-D-alanine carboxypeptidase AL536_01630 PF07943 Penicillin-binding protein 5, C-terminal domain AL536_01645 PF00529 HlyD membrane-fusion protein of T1SS AL536_01645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL536_01655 PF00194 Eukaryotic-type carbonic anhydrase AL536_01665 PF00119 ATP synthase A chain AL536_01670 PF00137 ATP synthase subunit C AL536_01675 PF00430 ATP synthase B/B' CF(0) AL536_01680 PF00213 ATP synthase delta (OSCP) subunit AL536_01685 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL536_01685 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL536_01685 PF00306 ATP synthase alpha/beta chain, C terminal domain AL536_01690 PF00231 ATP synthase AL536_01695 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL536_01695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL536_01700 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL536_01700 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL536_01705 PF03060 Nitronate monooxygenase AL536_01710 PF01810 LysE type translocator AL536_01715 PF00270 DEAD/DEAH box helicase AL536_01715 PF00271 Helicase conserved C-terminal domain AL536_01720 PF02954 Bacterial regulatory protein, Fis family AL536_01720 PF00158 Sigma-54 interaction domain AL536_01720 PF00072 Response regulator receiver domain AL536_01725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_01725 PF00512 His Kinase A (phospho-acceptor) domain AL536_01730 PF00672 HAMP domain AL536_01730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_01740 PF08267 Cobalamin-independent synthase, N-terminal domain AL536_01740 PF01717 Cobalamin-independent synthase, Catalytic domain AL536_01745 PF02080 TrkA-C domain AL536_01745 PF06826 Predicted Permease Membrane Region AL536_01750 PF00132 Bacterial transferase hexapeptide (six repeats) AL536_01755 PF02558 Ketopantoate reductase PanE/ApbA AL536_01755 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL536_01775 PF01810 LysE type translocator AL536_01810 PF09350 Domain of unknown function (DUF1992) AL536_01820 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AL536_01825 PF02253 Phospholipase A1 AL536_01840 PF02347 Glycine cleavage system P-protein AL536_01845 PF01597 Glycine cleavage H-protein AL536_01850 PF00464 Serine hydroxymethyltransferase AL536_01860 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL536_01860 PF01571 Aminomethyltransferase folate-binding domain AL536_01865 PF00089 Trypsin AL536_01870 PF00990 Diguanylate cyclase, GGDEF domain AL536_01870 PF17158 Membrane-associated sensor, integral membrane domain AL536_01875 PF00990 Diguanylate cyclase, GGDEF domain AL536_01875 PF08447 PAS fold AL536_01875 PF08448 PAS fold AL536_01875 PF00563 EAL domain AL536_01880 PF00294 pfkB family carbohydrate kinase AL536_01895 PF13419 Haloacid dehalogenase-like hydrolase AL536_01915 PF00226 DnaJ domain AL536_01915 PF01556 DnaJ C terminal domain AL536_01915 PF00684 DnaJ central domain AL536_01925 PF00563 EAL domain AL536_01925 PF00498 FHA domain AL536_01925 PF00990 Diguanylate cyclase, GGDEF domain AL536_01930 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL536_01930 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL536_01930 PF07055 Enoyl reductase FAD binding domain AL536_01935 PF13472 GDSL-like Lipase/Acylhydrolase family AL536_01940 PF00005 ABC transporter AL536_01955 PF02626 Carboxyltransferase domain, subdomain A and B AL536_01965 PF03746 LamB/YcsF family AL536_01970 PF00563 EAL domain AL536_01970 PF08447 PAS fold AL536_01970 PF05231 MASE1 AL536_01970 PF00990 Diguanylate cyclase, GGDEF domain AL536_01970 PF08448 PAS fold AL536_01970 PF13426 PAS domain AL536_01975 PF16363 GDP-mannose 4,6 dehydratase AL536_01980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_01980 PF12729 Four helix bundle sensory module for signal transduction AL536_01980 PF00672 HAMP domain AL536_01985 PF03222 Tryptophan/tyrosine permease family AL536_01990 PF04336 Acyl carrier protein phosphodiesterase AL536_01995 PF00270 DEAD/DEAH box helicase AL536_01995 PF00271 Helicase conserved C-terminal domain AL536_02000 PF00440 Bacterial regulatory proteins, tetR family AL536_02000 PF08361 MAATS-type transcriptional repressor, C-terminal region AL536_02010 PF01212 Beta-eliminating lyase AL536_02015 PF00293 NUDIX domain AL536_02025 PF07728 AAA domain (dynein-related subfamily) AL536_02025 PF17868 AAA lid domain AL536_02025 PF12592 Protein of unknown function (DUF3763) AL536_02030 PF05762 VWA domain containing CoxE-like protein AL536_02045 PF07715 TonB-dependent Receptor Plug Domain AL536_02045 PF07660 Secretin and TonB N terminus short domain AL536_02045 PF00593 TonB dependent receptor AL536_02060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_02060 PF17200 Single Cache domain 2 AL536_02060 PF00672 HAMP domain AL536_02070 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AL536_02080 PF00535 Glycosyl transferase family 2 AL536_02090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_02090 PF03466 LysR substrate binding domain AL536_02095 PF00892 EamA-like transporter family AL536_02100 PF12833 Helix-turn-helix domain AL536_02100 PF02311 AraC-like ligand binding domain AL536_02125 PF01145 SPFH domain / Band 7 family AL536_02125 PF16200 C-terminal region of band_7 AL536_02135 PF00296 Luciferase-like monooxygenase AL536_02140 PF03466 LysR substrate binding domain AL536_02140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_02145 PF02634 FdhD/NarQ family AL536_02150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_02150 PF03466 LysR substrate binding domain AL536_02155 PF01062 Bestrophin, RFP-TM, chloride channel AL536_02160 PF01568 Molydopterin dinucleotide binding domain AL536_02160 PF00384 Molybdopterin oxidoreductase AL536_02165 PF01654 Cytochrome bd terminal oxidase subunit I AL536_02170 PF02322 Cytochrome bd terminal oxidase subunit II AL536_02175 PF01081 KDPG and KHG aldolase AL536_02180 PF00294 pfkB family carbohydrate kinase AL536_02185 PF02614 Glucuronate isomerase AL536_02190 PF01232 Mannitol dehydrogenase Rossmann domain AL536_02190 PF08125 Mannitol dehydrogenase C-terminal domain AL536_02195 PF17137 Domain of unknown function (DUF5110) AL536_02195 PF16338 Domain of unknown function (DUF4968) AL536_02195 PF01055 Glycosyl hydrolases family 31 AL536_02195 PF13802 Galactose mutarotase-like AL536_02200 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL536_02205 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL536_02210 PF03480 Bacterial extracellular solute-binding protein, family 7 AL536_02215 PF07729 FCD domain AL536_02215 PF00392 Bacterial regulatory proteins, gntR family AL536_02220 PF03786 D-mannonate dehydratase (UxuA) AL536_02225 PF00325 Bacterial regulatory proteins, crp family AL536_02225 PF04198 Putative sugar-binding domain AL536_02230 PF08125 Mannitol dehydrogenase C-terminal domain AL536_02230 PF01232 Mannitol dehydrogenase Rossmann domain AL536_02235 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL536_02235 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL536_02240 PF07690 Major Facilitator Superfamily AL536_02245 PF13419 Haloacid dehalogenase-like hydrolase AL536_02250 PF00881 Nitroreductase family AL536_02255 PF03466 LysR substrate binding domain AL536_02255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_02260 PF00842 Alanine racemase, C-terminal domain AL536_02260 PF01168 Alanine racemase, N-terminal domain AL536_02265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_02265 PF00672 HAMP domain AL536_02290 PF02028 BCCT, betaine/carnitine/choline family transporter AL536_02325 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_02325 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL536_02325 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL536_02325 PF04324 BFD-like [2Fe-2S] binding domain AL536_02325 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL536_02330 PF13806 Rieske-like [2Fe-2S] domain AL536_02335 PF01226 Formate/nitrite transporter AL536_02340 PF14824 Sirohaem biosynthesis protein central AL536_02340 PF10414 Sirohaem synthase dimerisation region AL536_02340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL536_02360 PF11756 Nitrous oxide-stimulated promoter AL536_02365 PF07690 Major Facilitator Superfamily AL536_02370 PF00085 Thioredoxin AL536_02375 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL536_02375 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL536_02380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL536_02385 PF00873 AcrB/AcrD/AcrF family AL536_02390 PF02397 Bacterial sugar transferase AL536_02400 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL536_02400 PF10531 SLBB domain AL536_02400 PF02563 Polysaccharide biosynthesis/export protein AL536_02425 PF00534 Glycosyl transferases group 1 AL536_02425 PF13439 Glycosyltransferase Family 4 AL536_02430 PF13439 Glycosyltransferase Family 4 AL536_02430 PF00534 Glycosyl transferases group 1 AL536_02440 PF08532 Beta-galactosidase trimerisation domain AL536_02440 PF02449 Beta-galactosidase AL536_02440 PF08533 Beta-galactosidase C-terminal domain AL536_02445 PF13183 4Fe-4S dicluster domain AL536_02445 PF02754 Cysteine-rich domain AL536_02450 PF00890 FAD binding domain AL536_02455 PF04324 BFD-like [2Fe-2S] binding domain AL536_02455 PF01266 FAD dependent oxidoreductase AL536_02460 PF00230 Major intrinsic protein AL536_02465 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL536_02465 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL536_02470 PF10688 Bacterial inner membrane protein AL536_02510 PF17482 Phage tail sheath C-terminal domain AL536_02510 PF04984 Phage tail sheath protein subtilisin-like domain AL536_02645 PF05840 Bacteriophage replication gene A protein (GPA) AL536_02675 PF06892 Phage regulatory protein CII (CP76) AL536_02710 PF02899 Phage integrase, N-terminal SAM-like domain AL536_02710 PF00589 Phage integrase family AL536_02715 PF04363 Protein of unknown function (DUF496) AL536_02725 PF04337 Protein of unknown function, DUF480 AL536_02730 PF01541 GIY-YIG catalytic domain AL536_02740 PF13407 Periplasmic binding protein domain AL536_02745 PF00072 Response regulator receiver domain AL536_02745 PF09308 LuxQ, periplasmic AL536_02745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_02745 PF00512 His Kinase A (phospho-acceptor) domain AL536_02765 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL536_02765 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL536_02775 PF00528 Binding-protein-dependent transport system inner membrane component AL536_02780 PF03459 TOBE domain AL536_02780 PF00005 ABC transporter AL536_02795 PF12805 FUSC-like inner membrane protein yccS AL536_02800 PF00664 ABC transporter transmembrane region AL536_02800 PF00005 ABC transporter AL536_02800 PF03412 Peptidase C39 family AL536_02815 PF00529 HlyD membrane-fusion protein of T1SS AL536_02820 PF05736 OprF membrane domain AL536_02820 PF00691 OmpA family AL536_02835 PF13361 UvrD-like helicase C-terminal domain AL536_02835 PF12462 DNA helicase IV / RNA helicase N terminal AL536_02835 PF00580 UvrD/REP helicase N-terminal domain AL536_02840 PF00857 Isochorismatase family AL536_02845 PF02142 MGS-like domain AL536_02850 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL536_02855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_02855 PF00512 His Kinase A (phospho-acceptor) domain AL536_02855 PF00072 Response regulator receiver domain AL536_02855 PF00672 HAMP domain AL536_02855 PF01627 Hpt domain AL536_02860 PF02887 Pyruvate kinase, alpha/beta domain AL536_02860 PF00224 Pyruvate kinase, barrel domain AL536_02865 PF07690 Major Facilitator Superfamily AL536_02875 PF00672 HAMP domain AL536_02875 PF00512 His Kinase A (phospho-acceptor) domain AL536_02875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_02880 PF02954 Bacterial regulatory protein, Fis family AL536_02880 PF14532 Sigma-54 interaction domain AL536_02880 PF00072 Response regulator receiver domain AL536_02890 PF00465 Iron-containing alcohol dehydrogenase AL536_02895 PF06719 AraC-type transcriptional regulator N-terminus AL536_02895 PF12833 Helix-turn-helix domain AL536_02900 PF00704 Glycosyl hydrolases family 18 AL536_02900 PF06483 Chitinase C AL536_02910 PF00483 Nucleotidyl transferase AL536_02915 PF00990 Diguanylate cyclase, GGDEF domain AL536_02915 PF17158 Membrane-associated sensor, integral membrane domain AL536_02935 PF07549 SecD/SecF GG Motif AL536_02935 PF13721 SecD export protein N-terminal TM region AL536_02935 PF02355 Protein export membrane protein AL536_02940 PF02355 Protein export membrane protein AL536_02940 PF07549 SecD/SecF GG Motif AL536_02945 PF00106 short chain dehydrogenase AL536_02950 PF02803 Thiolase, C-terminal domain AL536_02950 PF00108 Thiolase, N-terminal domain AL536_02960 PF00561 alpha/beta hydrolase fold AL536_02960 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL536_02975 PF03264 NapC/NirT cytochrome c family, N-terminal region AL536_02980 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL536_02985 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL536_02985 PF00384 Molybdopterin oxidoreductase AL536_02985 PF01568 Molydopterin dinucleotide binding domain AL536_03000 PF07730 Histidine kinase AL536_03000 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL536_03000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_03000 PF00672 HAMP domain AL536_03005 PF00072 Response regulator receiver domain AL536_03005 PF00196 Bacterial regulatory proteins, luxR family AL536_03010 PF03606 C4-dicarboxylate anaerobic carrier AL536_03025 PF07690 Major Facilitator Superfamily AL536_03030 PF12729 Four helix bundle sensory module for signal transduction AL536_03030 PF00672 HAMP domain AL536_03030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_03035 PF13419 Haloacid dehalogenase-like hydrolase AL536_03040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL536_03040 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL536_03050 PF05736 OprF membrane domain AL536_03050 PF00691 OmpA family AL536_03055 PF08447 PAS fold AL536_03055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_03060 PF00456 Transketolase, thiamine diphosphate binding domain AL536_03060 PF02780 Transketolase, C-terminal domain AL536_03060 PF02779 Transketolase, pyrimidine binding domain AL536_03065 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL536_03075 PF00581 Rhodanese-like domain AL536_03080 PF00899 ThiF family AL536_03085 PF03453 MoeA N-terminal region (domain I and II) AL536_03085 PF03454 MoeA C-terminal region (domain IV) AL536_03085 PF00994 Probable molybdopterin binding domain AL536_03090 PF01227 GTP cyclohydrolase I AL536_03095 PF13520 Amino acid permease AL536_03100 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AL536_03105 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AL536_03110 PF12833 Helix-turn-helix domain AL536_03115 PF01641 SelR domain AL536_03115 PF01625 Peptide methionine sulfoxide reductase AL536_03120 PF01268 Formate--tetrahydrofolate ligase AL536_03130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_03130 PF03466 LysR substrate binding domain AL536_03135 PF13419 Haloacid dehalogenase-like hydrolase AL536_03140 PF01272 Transcription elongation factor, GreA/GreB, C-term AL536_03140 PF14760 Rnk N-terminus AL536_03150 PF13419 Haloacid dehalogenase-like hydrolase AL536_03160 PF00266 Aminotransferase class-V AL536_03170 PF00005 ABC transporter AL536_03175 PF00528 Binding-protein-dependent transport system inner membrane component AL536_03180 PF07702 UTRA domain AL536_03180 PF00392 Bacterial regulatory proteins, gntR family AL536_03190 PF00246 Zinc carboxypeptidase AL536_03190 PF18027 Cytosolic carboxypeptidase N-terminal domain AL536_03215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL536_03220 PF00528 Binding-protein-dependent transport system inner membrane component AL536_03225 PF00528 Binding-protein-dependent transport system inner membrane component AL536_03225 PF12911 N-terminal TM domain of oligopeptide transport permease C AL536_03230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL536_03230 PF00005 ABC transporter AL536_03235 PF00132 Bacterial transferase hexapeptide (six repeats) AL536_03235 PF03479 Plants and Prokaryotes Conserved (PCC) domain AL536_03235 PF12804 MobA-like NTP transferase domain AL536_03250 PF00072 Response regulator receiver domain AL536_03250 PF09456 RcsC Alpha-Beta-Loop (ABL) AL536_03250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_03250 PF00512 His Kinase A (phospho-acceptor) domain AL536_03255 PF01590 GAF domain AL536_03255 PF00990 Diguanylate cyclase, GGDEF domain AL536_03255 PF00563 EAL domain AL536_03255 PF00360 Phytochrome region AL536_03260 PF00196 Bacterial regulatory proteins, luxR family AL536_03260 PF00072 Response regulator receiver domain AL536_03265 PF00990 Diguanylate cyclase, GGDEF domain AL536_03265 PF07694 5TMR of 5TMR-LYT AL536_03285 PF05525 Branched-chain amino acid transport protein AL536_03300 PF08774 VRR-NUC domain AL536_03300 PF18081 Fanconi anemia-associated nuclease SAP domain AL536_03320 PF13302 Acetyltransferase (GNAT) domain AL536_03325 PF01799 [2Fe-2S] binding domain AL536_03325 PF00111 2Fe-2S iron-sulfur cluster binding domain AL536_03330 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AL536_03345 PF00465 Iron-containing alcohol dehydrogenase AL536_03350 PF06719 AraC-type transcriptional regulator N-terminus AL536_03350 PF12833 Helix-turn-helix domain AL536_03370 PF00155 Aminotransferase class I and II AL536_03380 PF12848 ABC transporter AL536_03380 PF00005 ABC transporter AL536_03380 PF16326 ABC transporter C-terminal domain AL536_03385 PF01418 Helix-turn-helix domain, rpiR family AL536_03385 PF01380 SIS domain AL536_03390 PF13580 SIS domain AL536_03395 PF00367 phosphotransferase system, EIIB AL536_03395 PF02378 Phosphotransferase system, EIIC AL536_03400 PF07690 Major Facilitator Superfamily AL536_03415 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AL536_03420 PF00486 Transcriptional regulatory protein, C terminal AL536_03450 PF00155 Aminotransferase class I and II AL536_03455 PF12833 Helix-turn-helix domain AL536_03455 PF02311 AraC-like ligand binding domain AL536_03460 PF01641 SelR domain AL536_03460 PF01625 Peptide methionine sulfoxide reductase AL536_03465 PF00860 Permease family AL536_03475 PF01177 Asp/Glu/Hydantoin racemase AL536_03485 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AL536_03495 PF00528 Binding-protein-dependent transport system inner membrane component AL536_03500 PF00528 Binding-protein-dependent transport system inner membrane component AL536_03505 PF00005 ABC transporter AL536_03515 PF13593 SBF-like CPA transporter family (DUF4137) AL536_03520 PF01425 Amidase AL536_03530 PF00266 Aminotransferase class-V AL536_03535 PF01546 Peptidase family M20/M25/M40 AL536_03535 PF07687 Peptidase dimerisation domain AL536_03550 PF01979 Amidohydrolase family AL536_03555 PF00576 HIUase/Transthyretin family AL536_03560 PF01014 Uricase AL536_03560 PF09349 OHCU decarboxylase AL536_03575 PF00111 2Fe-2S iron-sulfur cluster binding domain AL536_03575 PF01799 [2Fe-2S] binding domain AL536_03580 PF02608 ABC transporter substrate-binding protein PnrA-like AL536_03595 PF00005 ABC transporter AL536_03600 PF08362 YcdC-like protein, C-terminal region AL536_03600 PF00440 Bacterial regulatory proteins, tetR family AL536_03610 PF00990 Diguanylate cyclase, GGDEF domain AL536_03610 PF05230 MASE2 domain AL536_03620 PF00990 Diguanylate cyclase, GGDEF domain AL536_03620 PF00072 Response regulator receiver domain AL536_03635 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL536_03635 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL536_03635 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL536_03640 PF02233 NAD(P) transhydrogenase beta subunit AL536_03650 PF00486 Transcriptional regulatory protein, C terminal AL536_03650 PF00072 Response regulator receiver domain AL536_03665 PF01253 Translation initiation factor SUI1 AL536_03680 PF01820 D-ala D-ala ligase N-terminus AL536_03680 PF07478 D-ala D-ala ligase C-terminus AL536_03690 PF13380 CoA binding domain AL536_03690 PF13607 Succinyl-CoA ligase like flavodoxin domain AL536_03690 PF00583 Acetyltransferase (GNAT) family AL536_03695 PF03466 LysR substrate binding domain AL536_03695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_03700 PF00593 TonB dependent receptor AL536_03700 PF07715 TonB-dependent Receptor Plug Domain AL536_03710 PF12793 Sugar transport-related sRNA regulator N-term AL536_03710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL536_03720 PF03061 Thioesterase superfamily AL536_03725 PF01435 Peptidase family M48 AL536_03730 PF03831 PhnA domain AL536_03730 PF08274 PhnA Zinc-Ribbon AL536_03740 PF03741 Integral membrane protein TerC family AL536_03745 PF00149 Calcineurin-like phosphoesterase AL536_03745 PF02872 5'-nucleotidase, C-terminal domain AL536_03750 PF11398 Protein of unknown function (DUF2813) AL536_03755 PF06496 Protein of unknown function (DUF1097) AL536_03760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_03760 PF03466 LysR substrate binding domain AL536_03765 PF01226 Formate/nitrite transporter AL536_03770 PF04264 YceI-like domain AL536_03775 PF01292 Prokaryotic cytochrome b561 AL536_03800 PF13426 PAS domain AL536_03800 PF00990 Diguanylate cyclase, GGDEF domain AL536_03800 PF00563 EAL domain AL536_03810 PF00384 Molybdopterin oxidoreductase AL536_03815 PF02634 FdhD/NarQ family AL536_03820 PF00111 2Fe-2S iron-sulfur cluster binding domain AL536_03820 PF00175 Oxidoreductase NAD-binding domain AL536_03820 PF00970 Oxidoreductase FAD-binding domain AL536_03825 PF00672 HAMP domain AL536_03825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_03825 PF00512 His Kinase A (phospho-acceptor) domain AL536_03825 PF01627 Hpt domain AL536_03825 PF00072 Response regulator receiver domain AL536_03825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL536_03830 PF00072 Response regulator receiver domain AL536_03840 PF12833 Helix-turn-helix domain AL536_03840 PF02311 AraC-like ligand binding domain AL536_03845 PF00589 Phage integrase family AL536_03845 PF13356 Arm DNA-binding domain AL536_03850 PF01223 DNA/RNA non-specific endonuclease AL536_03855 PF00816 H-NS histone family AL536_03860 PF00990 Diguanylate cyclase, GGDEF domain AL536_03860 PF00563 EAL domain AL536_03860 PF13426 PAS domain AL536_03865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_03865 PF17200 Single Cache domain 2 AL536_03865 PF00672 HAMP domain AL536_03875 PF00563 EAL domain AL536_03875 PF12792 CSS motif domain associated with EAL AL536_03905 PF17874 MalT-like TPR region AL536_03905 PF00196 Bacterial regulatory proteins, luxR family AL536_03920 PF02665 Nitrate reductase gamma subunit AL536_03925 PF02613 Nitrate reductase delta subunit AL536_03930 PF13247 4Fe-4S dicluster domain AL536_03930 PF14711 Respiratory nitrate reductase beta C-terminal AL536_03935 PF01568 Molydopterin dinucleotide binding domain AL536_03935 PF00384 Molybdopterin oxidoreductase AL536_03935 PF14710 Respiratory nitrate reductase alpha N-terminal AL536_03940 PF07690 Major Facilitator Superfamily AL536_03945 PF00672 HAMP domain AL536_03945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_03945 PF07730 Histidine kinase AL536_03945 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL536_03950 PF00072 Response regulator receiver domain AL536_03950 PF00196 Bacterial regulatory proteins, luxR family AL536_03955 PF01814 Hemerythrin HHE cation binding domain AL536_03955 PF04405 Domain of Unknown function (DUF542) AL536_03965 PF17202 Single cache domain 3 AL536_03965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_03965 PF00672 HAMP domain AL536_03975 PF18113 Rubredoxin binding C-terminal domain AL536_03975 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_03980 PF00301 Rubredoxin AL536_03980 PF00258 Flavodoxin AL536_03980 PF00753 Metallo-beta-lactamase superfamily AL536_03985 PF00158 Sigma-54 interaction domain AL536_03985 PF01590 GAF domain AL536_03995 PF09615 CRISPR-associated protein (Cas_Csy3) AL536_04000 PF09614 CRISPR-associated protein (Cas_Csy2) AL536_04005 PF09611 CRISPR-associated protein (Cas_Csy1) AL536_04010 PF18019 HD domain AL536_04015 PF01867 CRISPR associated protein Cas1 AL536_04025 PF02018 Carbohydrate binding domain AL536_04025 PF02927 Cellulase N-terminal ig-like domain AL536_04025 PF00759 Glycosyl hydrolase family 9 AL536_04030 PF00356 Bacterial regulatory proteins, lacI family AL536_04040 PF01263 Aldose 1-epimerase AL536_04045 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL536_04045 PF06165 Glycosyltransferase family 36 AL536_04050 PF00005 ABC transporter AL536_04050 PF17912 MalK OB fold domain AL536_04055 PF00232 Glycosyl hydrolase family 1 AL536_04060 PF00528 Binding-protein-dependent transport system inner membrane component AL536_04065 PF00528 Binding-protein-dependent transport system inner membrane component AL536_04075 PF00356 Bacterial regulatory proteins, lacI family AL536_04080 PF00672 HAMP domain AL536_04080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_04080 PF12729 Four helix bundle sensory module for signal transduction AL536_04090 PF01554 MatE AL536_04095 PF12833 Helix-turn-helix domain AL536_04105 PF04002 RadC-like JAB domain AL536_04140 PF00075 RNase H AL536_04190 PF05638 Type VI secretion system effector, Hcp AL536_04195 PF01926 50S ribosome-binding GTPase AL536_04200 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL536_04200 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL536_04205 PF00654 Voltage gated chloride channel AL536_04215 PF00155 Aminotransferase class I and II AL536_04220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_04220 PF00072 Response regulator receiver domain AL536_04225 PF13476 AAA domain AL536_04230 PF12320 Type 5 capsule protein repressor C-terminal domain AL536_04230 PF00149 Calcineurin-like phosphoesterase AL536_04235 PF00356 Bacterial regulatory proteins, lacI family AL536_04235 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL536_04240 PF00381 PTS HPr component phosphorylation site AL536_04240 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL536_04245 PF00294 pfkB family carbohydrate kinase AL536_04250 PF02378 Phosphotransferase system, EIIC AL536_04250 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL536_04255 PF08443 RimK-like ATP-grasp domain AL536_04255 PF18030 RimK PreATP-grasp domain AL536_04260 PF00155 Aminotransferase class I and II AL536_04270 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL536_04270 PF03477 ATP cone domain AL536_04280 PF00873 AcrB/AcrD/AcrF family AL536_04285 PF00529 HlyD membrane-fusion protein of T1SS AL536_04285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL536_04295 PF04143 Sulphur transport AL536_04310 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_04310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL536_04330 PF03466 LysR substrate binding domain AL536_04330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_04335 PF01810 LysE type translocator AL536_04340 PF00072 Response regulator receiver domain AL536_04340 PF00486 Transcriptional regulatory protein, C terminal AL536_04350 PF01266 FAD dependent oxidoreductase AL536_04350 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL536_04360 PF03466 LysR substrate binding domain AL536_04360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_04375 PF00440 Bacterial regulatory proteins, tetR family AL536_04380 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL536_04380 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL536_04395 PF01810 LysE type translocator AL536_04410 PF00857 Isochorismatase family AL536_04415 PF01965 DJ-1/PfpI family AL536_04415 PF12833 Helix-turn-helix domain AL536_04420 PF00583 Acetyltransferase (GNAT) family AL536_04430 PF01810 LysE type translocator AL536_04435 PF00293 NUDIX domain AL536_04440 PF06942 GlpM protein AL536_04445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL536_04445 PF02272 DHHA1 domain AL536_04445 PF01411 tRNA synthetases class II (A) AL536_04460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL536_04475 PF13419 Haloacid dehalogenase-like hydrolase AL536_04480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL536_04500 PF01928 CYTH domain AL536_04505 PF00583 Acetyltransferase (GNAT) family AL536_04540 PF13649 Methyltransferase domain AL536_04550 PF08534 Redoxin AL536_04550 PF00462 Glutaredoxin AL536_04555 PF00892 EamA-like transporter family AL536_04565 PF02627 Carboxymuconolactone decarboxylase family AL536_04570 PF13411 MerR HTH family regulatory protein AL536_04650 PF00453 Ribosomal protein L20 AL536_04655 PF01632 Ribosomal protein L35 AL536_04660 PF05198 Translation initiation factor IF-3, N-terminal domain AL536_04660 PF00707 Translation initiation factor IF-3, C-terminal domain AL536_04665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL536_04665 PF02824 TGS domain AL536_04665 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL536_04665 PF03129 Anticodon binding domain AL536_04670 PF00270 DEAD/DEAH box helicase AL536_04670 PF00271 Helicase conserved C-terminal domain AL536_04670 PF03880 DbpA RNA binding domain AL536_04675 PF08206 Ribonuclease B OB domain AL536_04675 PF00575 S1 RNA binding domain AL536_04675 PF00773 RNB domain AL536_04685 PF12849 PBP superfamily domain AL536_04690 PF01575 MaoC like domain AL536_04695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_04695 PF03466 LysR substrate binding domain AL536_04710 PF00486 Transcriptional regulatory protein, C terminal AL536_04715 PF02683 Cytochrome C biogenesis protein transmembrane region AL536_04715 PF11412 Disulphide bond corrector protein DsbC AL536_04720 PF00578 AhpC/TSA family AL536_04725 PF02525 Flavodoxin-like fold AL536_04730 PF00155 Aminotransferase class I and II AL536_04730 PF00392 Bacterial regulatory proteins, gntR family AL536_04735 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_04750 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL536_04760 PF12833 Helix-turn-helix domain AL536_04765 PF02378 Phosphotransferase system, EIIC AL536_04765 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL536_04765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL536_04770 PF01238 Phosphomannose isomerase type I AL536_04790 PF00753 Metallo-beta-lactamase superfamily AL536_04790 PF14863 Alkyl sulfatase dimerisation AL536_04790 PF14864 Alkyl sulfatase C-terminal AL536_04800 PF08220 DeoR-like helix-turn-helix domain AL536_04800 PF00455 DeoR C terminal sensor domain AL536_04805 PF14602 Hexapeptide repeat of succinyl-transferase AL536_04805 PF12464 Maltose acetyltransferase AL536_04810 PF17158 Membrane-associated sensor, integral membrane domain AL536_04810 PF00990 Diguanylate cyclase, GGDEF domain AL536_04815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_04815 PF00672 HAMP domain AL536_04815 PF12729 Four helix bundle sensory module for signal transduction AL536_04820 PF00797 N-acetyltransferase AL536_04830 PF01168 Alanine racemase, N-terminal domain AL536_04830 PF00842 Alanine racemase, C-terminal domain AL536_04845 PF00528 Binding-protein-dependent transport system inner membrane component AL536_04850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL536_04855 PF00005 ABC transporter AL536_04855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL536_04860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_04860 PF03466 LysR substrate binding domain AL536_04865 PF00072 Response regulator receiver domain AL536_04870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_04870 PF00512 His Kinase A (phospho-acceptor) domain AL536_04870 PF01627 Hpt domain AL536_04870 PF00072 Response regulator receiver domain AL536_04880 PF01975 Survival protein SurE AL536_04895 PF12833 Helix-turn-helix domain AL536_04900 PF03807 NADP oxidoreductase coenzyme F420-dependent AL536_04900 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL536_04905 PF03480 Bacterial extracellular solute-binding protein, family 7 AL536_04915 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL536_04920 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL536_04930 PF00474 Sodium:solute symporter family AL536_04935 PF03466 LysR substrate binding domain AL536_04935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_04940 PF13409 Glutathione S-transferase, N-terminal domain AL536_04945 PF02230 Phospholipase/Carboxylesterase AL536_04950 PF01810 LysE type translocator AL536_04965 PF07687 Peptidase dimerisation domain AL536_04965 PF01546 Peptidase family M20/M25/M40 AL536_04970 PF03466 LysR substrate binding domain AL536_04970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_04975 PF07690 Major Facilitator Superfamily AL536_04980 PF00005 ABC transporter AL536_04985 PF01032 FecCD transport family AL536_04990 PF01497 Periplasmic binding protein AL536_04995 PF03480 Bacterial extracellular solute-binding protein, family 7 AL536_05000 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL536_05005 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL536_05010 PF02614 Glucuronate isomerase AL536_05015 PF08125 Mannitol dehydrogenase C-terminal domain AL536_05015 PF01232 Mannitol dehydrogenase Rossmann domain AL536_05020 PF08666 SAF domain AL536_05020 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AL536_05025 PF00392 Bacterial regulatory proteins, gntR family AL536_05025 PF07729 FCD domain AL536_05045 PF00676 Dehydrogenase E1 component AL536_05050 PF02779 Transketolase, pyrimidine binding domain AL536_05050 PF02780 Transketolase, C-terminal domain AL536_05055 PF00364 Biotin-requiring enzyme AL536_05055 PF02817 e3 binding domain AL536_05055 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL536_05060 PF01012 Electron transfer flavoprotein domain AL536_05060 PF00766 Electron transfer flavoprotein FAD-binding domain AL536_05065 PF01012 Electron transfer flavoprotein domain AL536_05075 PF02798 Glutathione S-transferase, N-terminal domain AL536_05090 PF00005 ABC transporter AL536_05095 PF00528 Binding-protein-dependent transport system inner membrane component AL536_05100 PF00528 Binding-protein-dependent transport system inner membrane component AL536_05105 PF12849 PBP superfamily domain AL536_05115 PF12833 Helix-turn-helix domain AL536_05115 PF02311 AraC-like ligand binding domain AL536_05125 PF03180 NLPA lipoprotein AL536_05130 PF04715 Anthranilate synthase component I, N terminal region AL536_05130 PF00425 chorismate binding enzyme AL536_05130 PF00117 Glutamine amidotransferase class-I AL536_05135 PF03466 LysR substrate binding domain AL536_05135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_05140 PF00196 Bacterial regulatory proteins, luxR family AL536_05140 PF00072 Response regulator receiver domain AL536_05145 PF17200 Single Cache domain 2 AL536_05145 PF07730 Histidine kinase AL536_05150 PF03480 Bacterial extracellular solute-binding protein, family 7 AL536_05160 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL536_05165 PF02810 SEC-C motif AL536_05165 PF07517 SecA DEAD-like domain AL536_05165 PF01043 SecA preprotein cross-linking domain AL536_05165 PF07516 SecA Wing and Scaffold domain AL536_05170 PF07690 Major Facilitator Superfamily AL536_05185 PF01144 Coenzyme A transferase AL536_05195 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL536_05195 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL536_05200 PF00378 Enoyl-CoA hydratase/isomerase AL536_05205 PF00378 Enoyl-CoA hydratase/isomerase AL536_05210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL536_05210 PF02770 Acyl-CoA dehydrogenase, middle domain AL536_05210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL536_05215 PF00171 Aldehyde dehydrogenase family AL536_05220 PF02803 Thiolase, C-terminal domain AL536_05220 PF00108 Thiolase, N-terminal domain AL536_05225 PF09278 MerR, DNA binding AL536_05225 PF00376 MerR family regulatory protein AL536_05230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL536_05230 PF02770 Acyl-CoA dehydrogenase, middle domain AL536_05230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL536_05235 PF01039 Carboxyl transferase domain AL536_05240 PF00378 Enoyl-CoA hydratase/isomerase AL536_05245 PF00682 HMGL-like AL536_05255 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL536_05255 PF00578 AhpC/TSA family AL536_05260 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_05260 PF13192 Thioredoxin domain AL536_05265 PF01979 Amidohydrolase family AL536_05280 PF00561 alpha/beta hydrolase fold AL536_05290 PF12833 Helix-turn-helix domain AL536_05295 PF00465 Iron-containing alcohol dehydrogenase AL536_05300 PF01966 HD domain AL536_05315 PF00300 Histidine phosphatase superfamily (branch 1) AL536_05340 PF00293 NUDIX domain AL536_05345 PF01048 Phosphorylase superfamily AL536_05385 PF00589 Phage integrase family AL536_05400 PF00871 Acetokinase family AL536_05410 PF07715 TonB-dependent Receptor Plug Domain AL536_05410 PF00593 TonB dependent receptor AL536_05415 PF12833 Helix-turn-helix domain AL536_05420 PF00005 ABC transporter AL536_05425 PF01032 FecCD transport family AL536_05430 PF01032 FecCD transport family AL536_05450 PF05547 Immune inhibitor A peptidase M6 AL536_05450 PF00801 PKD domain AL536_05455 PF03280 Proteobacterial lipase chaperone protein AL536_05460 PF00561 alpha/beta hydrolase fold AL536_05465 PF00672 HAMP domain AL536_05465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_05470 PF13404 AsnC-type helix-turn-helix domain AL536_05470 PF01037 Lrp/AsnC ligand binding domain AL536_05490 PF07690 Major Facilitator Superfamily AL536_05500 PF00672 HAMP domain AL536_05500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_05500 PF12729 Four helix bundle sensory module for signal transduction AL536_05515 PF02540 NAD synthase AL536_05520 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL536_05525 PF00072 Response regulator receiver domain AL536_05525 PF04397 LytTr DNA-binding domain AL536_05530 PF07694 5TMR of 5TMR-LYT AL536_05530 PF06580 Histidine kinase AL536_05535 PF00248 Aldo/keto reductase family AL536_05550 PF00128 Alpha amylase, catalytic domain AL536_05555 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL536_05555 PF04151 Bacterial pre-peptidase C-terminal domain AL536_05555 PF07504 Fungalysin/Thermolysin Propeptide Motif AL536_05555 PF01447 Thermolysin metallopeptidase, catalytic domain AL536_05555 PF03413 Peptidase propeptide and YPEB domain AL536_05560 PF03922 OmpW family AL536_05565 PF00011 Hsp20/alpha crystallin family AL536_05580 PF01042 Endoribonuclease L-PSP AL536_05595 PF02371 Transposase IS116/IS110/IS902 family AL536_05595 PF01548 Transposase AL536_05615 PF00589 Phage integrase family AL536_05615 PF13495 Phage integrase, N-terminal SAM-like domain AL536_05625 PF00005 ABC transporter AL536_05625 PF00664 ABC transporter transmembrane region AL536_05630 PF00664 ABC transporter transmembrane region AL536_05630 PF00005 ABC transporter AL536_05640 PF00563 EAL domain AL536_05640 PF12792 CSS motif domain associated with EAL AL536_05645 PF04138 GtrA-like protein AL536_05660 PF00912 Transglycosylase AL536_05670 PF01327 Polypeptide deformylase AL536_05680 PF00155 Aminotransferase class I and II AL536_05680 PF00392 Bacterial regulatory proteins, gntR family AL536_05685 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL536_05685 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL536_05690 PF01925 Sulfite exporter TauE/SafE AL536_05695 PF17848 Acetyl-coA carboxylase zinc finger domain AL536_05695 PF01039 Carboxyl transferase domain AL536_05700 PF03466 LysR substrate binding domain AL536_05700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_05730 PF00483 Nucleotidyl transferase AL536_05740 PF01548 Transposase AL536_05740 PF02371 Transposase IS116/IS110/IS902 family AL536_05750 PF08240 Alcohol dehydrogenase GroES-like domain AL536_05750 PF00107 Zinc-binding dehydrogenase AL536_05755 PF00155 Aminotransferase class I and II AL536_05760 PF00171 Aldehyde dehydrogenase family AL536_05765 PF00158 Sigma-54 interaction domain AL536_05765 PF01590 GAF domain AL536_05765 PF02954 Bacterial regulatory protein, Fis family AL536_05770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_05770 PF03466 LysR substrate binding domain AL536_05775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL536_05805 PF01966 HD domain AL536_05810 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AL536_05810 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AL536_05815 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL536_05820 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL536_05820 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL536_05830 PF02743 Cache domain AL536_05830 PF00672 HAMP domain AL536_05830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_05835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_05835 PF03466 LysR substrate binding domain AL536_05850 PF02607 B12 binding domain AL536_05850 PF02310 B12 binding domain AL536_05850 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL536_05850 PF02574 Homocysteine S-methyltransferase AL536_05850 PF00809 Pterin binding enzyme AL536_05855 PF13520 Amino acid permease AL536_05865 PF03466 LysR substrate binding domain AL536_05865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_05870 PF07687 Peptidase dimerisation domain AL536_05870 PF01546 Peptidase family M20/M25/M40 AL536_05875 PF03806 AbgT putative transporter family AL536_05880 PF02595 Glycerate kinase family AL536_05885 PF02447 GntP family permease AL536_05890 PF17853 GGDEF-like domain AL536_05890 PF05651 Putative sugar diacid recognition AL536_05890 PF13556 PucR C-terminal helix-turn-helix domain AL536_05895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL536_05895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL536_05900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL536_05900 PF12793 Sugar transport-related sRNA regulator N-term AL536_05915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_05915 PF00672 HAMP domain AL536_05915 PF02743 Cache domain AL536_05925 PF00672 HAMP domain AL536_05925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_05925 PF02743 Cache domain AL536_05930 PF00375 Sodium:dicarboxylate symporter family AL536_05935 PF01042 Endoribonuclease L-PSP AL536_05970 PF04972 BON domain AL536_05970 PF13629 Pilus formation protein N terminal region AL536_05970 PF00263 Bacterial type II and III secretion system protein AL536_05975 PF00437 Type II/IV secretion system protein AL536_06005 PF03960 ArsC family AL536_06010 PF01758 Sodium Bile acid symporter family AL536_06025 PF12833 Helix-turn-helix domain AL536_06025 PF02311 AraC-like ligand binding domain AL536_06035 PF02653 Branched-chain amino acid transport system / permease component AL536_06040 PF02653 Branched-chain amino acid transport system / permease component AL536_06045 PF00005 ABC transporter AL536_06060 PF14765 Polyketide synthase dehydratase AL536_06060 PF00550 Phosphopantetheine attachment site AL536_06060 PF08659 KR domain AL536_06060 PF02801 Beta-ketoacyl synthase, C-terminal domain AL536_06060 PF00109 Beta-ketoacyl synthase, N-terminal domain AL536_06060 PF16197 Ketoacyl-synthetase C-terminal extension AL536_06060 PF08240 Alcohol dehydrogenase GroES-like domain AL536_06060 PF00698 Acyl transferase domain AL536_06065 PF14525 AraC-binding-like domain AL536_06065 PF12833 Helix-turn-helix domain AL536_06070 PF00392 Bacterial regulatory proteins, gntR family AL536_06070 PF00155 Aminotransferase class I and II AL536_06075 PF00589 Phage integrase family AL536_06075 PF02899 Phage integrase, N-terminal SAM-like domain AL536_06080 PF00150 Cellulase (glycosyl hydrolase family 5) AL536_06080 PF02013 Cellulose or protein binding domain AL536_06095 PF01238 Phosphomannose isomerase type I AL536_06100 PF00672 HAMP domain AL536_06100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_06100 PF02743 Cache domain AL536_06105 PF02264 LamB porin AL536_06110 PF04041 beta-1,4-mannooligosaccharide phosphorylase AL536_06115 PF04041 beta-1,4-mannooligosaccharide phosphorylase AL536_06120 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL536_06120 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL536_06120 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL536_06120 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL536_06125 PF00356 Bacterial regulatory proteins, lacI family AL536_06125 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL536_06130 PF00005 ABC transporter AL536_06130 PF17912 MalK OB fold domain AL536_06140 PF04854 Protein of unknown function, DUF624 AL536_06145 PF00528 Binding-protein-dependent transport system inner membrane component AL536_06150 PF00528 Binding-protein-dependent transport system inner membrane component AL536_06160 PF01554 MatE AL536_06250 PF00665 Integrase core domain AL536_06250 PF09299 Mu transposase, C-terminal AL536_06260 PF00478 IMP dehydrogenase / GMP reductase domain AL536_06270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL536_06270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL536_06275 PF01256 Carbohydrate kinase AL536_06275 PF03853 YjeF-related protein N-terminus AL536_06285 PF00486 Transcriptional regulatory protein, C terminal AL536_06285 PF00072 Response regulator receiver domain AL536_06305 PF03889 Alternative ribosome-rescue factor A AL536_06310 PF00313 'Cold-shock' DNA-binding domain AL536_06315 PF07152 YaeQ protein AL536_06320 PF00990 Diguanylate cyclase, GGDEF domain AL536_06325 PF00970 Oxidoreductase FAD-binding domain AL536_06325 PF00175 Oxidoreductase NAD-binding domain AL536_06325 PF00042 Globin AL536_06330 PF01590 GAF domain AL536_06330 PF00158 Sigma-54 interaction domain AL536_06340 PF01546 Peptidase family M20/M25/M40 AL536_06340 PF07687 Peptidase dimerisation domain AL536_06345 PF07670 Nucleoside recognition AL536_06345 PF07662 Na+ dependent nucleoside transporter C-terminus AL536_06345 PF01773 Na+ dependent nucleoside transporter N-terminus AL536_06355 PF00128 Alpha amylase, catalytic domain AL536_06370 PF00672 HAMP domain AL536_06370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_06370 PF02743 Cache domain AL536_06375 PF17863 AAA lid domain AL536_06375 PF07726 ATPase family associated with various cellular activities (AAA) AL536_06380 PF01882 Protein of unknown function DUF58 AL536_06395 PF13519 von Willebrand factor type A domain AL536_06395 PF07584 Aerotolerance regulator N-terminal AL536_06410 PF17158 Membrane-associated sensor, integral membrane domain AL536_06410 PF00990 Diguanylate cyclase, GGDEF domain AL536_06420 PF01627 Hpt domain AL536_06420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_06420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL536_06420 PF00672 HAMP domain AL536_06420 PF00512 His Kinase A (phospho-acceptor) domain AL536_06420 PF00072 Response regulator receiver domain AL536_06425 PF00072 Response regulator receiver domain AL536_06425 PF00990 Diguanylate cyclase, GGDEF domain AL536_06430 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL536_06435 PF04996 Succinylarginine dihydrolase AL536_06440 PF00171 Aldehyde dehydrogenase family AL536_06445 PF04958 Arginine N-succinyltransferase beta subunit AL536_06450 PF04958 Arginine N-succinyltransferase beta subunit AL536_06455 PF00202 Aminotransferase class-III AL536_06460 PF12833 Helix-turn-helix domain AL536_06465 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AL536_06465 PF13378 Enolase C-terminal domain-like AL536_06475 PF00528 Binding-protein-dependent transport system inner membrane component AL536_06480 PF00528 Binding-protein-dependent transport system inner membrane component AL536_06485 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL536_06490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_06490 PF03466 LysR substrate binding domain AL536_06515 PF04320 Protein with unknown function (DUF469) AL536_06520 PF00582 Universal stress protein family AL536_06525 PF00472 RF-1 domain AL536_06530 PF12843 Putative quorum-sensing-regulated virulence factor AL536_06540 PF01266 FAD dependent oxidoreductase AL536_06555 PF00072 Response regulator receiver domain AL536_06555 PF00158 Sigma-54 interaction domain AL536_06555 PF02954 Bacterial regulatory protein, Fis family AL536_06560 PF01238 Phosphomannose isomerase type I AL536_06565 PF02595 Glycerate kinase family AL536_06570 PF09261 Alpha mannosidase middle domain AL536_06570 PF07748 Glycosyl hydrolases family 38 C-terminal domain AL536_06570 PF01074 Glycosyl hydrolases family 38 N-terminal domain AL536_06575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL536_06575 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL536_06575 PF02378 Phosphotransferase system, EIIC AL536_06580 PF00392 Bacterial regulatory proteins, gntR family AL536_06580 PF07702 UTRA domain AL536_06585 PF02743 Cache domain AL536_06585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_06585 PF00512 His Kinase A (phospho-acceptor) domain AL536_06600 PF00672 HAMP domain AL536_06600 PF12729 Four helix bundle sensory module for signal transduction AL536_06600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_06605 PF00990 Diguanylate cyclase, GGDEF domain AL536_06605 PF00563 EAL domain AL536_06605 PF03707 Bacterial signalling protein N terminal repeat AL536_06605 PF13188 PAS domain AL536_06610 PF07690 Major Facilitator Superfamily AL536_06615 PF03009 Glycerophosphoryl diester phosphodiesterase family AL536_06620 PF01048 Phosphorylase superfamily AL536_06625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_06625 PF03466 LysR substrate binding domain AL536_06630 PF00356 Bacterial regulatory proteins, lacI family AL536_06635 PF00294 pfkB family carbohydrate kinase AL536_06640 PF13407 Periplasmic binding protein domain AL536_06645 PF02653 Branched-chain amino acid transport system / permease component AL536_06650 PF00005 ABC transporter AL536_06655 PF05025 RbsD / FucU transport protein family AL536_06700 PF17871 AAA lid domain AL536_06700 PF00004 ATPase family associated with various cellular activities (AAA) AL536_06700 PF07724 AAA domain (Cdc48 subfamily) AL536_06700 PF10431 C-terminal, D2-small domain, of ClpB protein AL536_06760 PF01037 Lrp/AsnC ligand binding domain AL536_06765 PF01810 LysE type translocator AL536_06770 PF01047 MarR family AL536_06780 PF00892 EamA-like transporter family AL536_06785 PF00849 RNA pseudouridylate synthase AL536_06790 PF16925 Tetracyclin repressor-like, C-terminal domain AL536_06790 PF00440 Bacterial regulatory proteins, tetR family AL536_06795 PF00107 Zinc-binding dehydrogenase AL536_06795 PF16884 N-terminal domain of oxidoreductase AL536_06805 PF01740 STAS domain AL536_06805 PF00916 Sulfate permease family AL536_06810 PF13419 Haloacid dehalogenase-like hydrolase AL536_06815 PF07702 UTRA domain AL536_06815 PF00392 Bacterial regulatory proteins, gntR family AL536_06820 PF01547 Bacterial extracellular solute-binding protein AL536_06840 PF08402 TOBE domain AL536_06840 PF00005 ABC transporter AL536_06850 PF00563 EAL domain AL536_06850 PF12792 CSS motif domain associated with EAL AL536_06855 PF00248 Aldo/keto reductase family AL536_06860 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL536_06865 PF03466 LysR substrate binding domain AL536_06865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_06870 PF07690 Major Facilitator Superfamily AL536_06890 PF00581 Rhodanese-like domain AL536_06900 PF00196 Bacterial regulatory proteins, luxR family AL536_06905 PF01479 S4 domain AL536_06905 PF00579 tRNA synthetases class I (W and Y) AL536_06910 PF13649 Methyltransferase domain AL536_06915 PF03928 Haem-degrading AL536_06920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL536_06920 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL536_06925 PF08220 DeoR-like helix-turn-helix domain AL536_06925 PF00455 DeoR C terminal sensor domain AL536_06930 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL536_06930 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL536_06945 PF07968 Leukocidin/Hemolysin toxin family AL536_06945 PF16458 Beta-prism lectin AL536_06945 PF12563 Hemolytic toxin N terminal AL536_06950 PF00657 GDSL-like Lipase/Acylhydrolase AL536_06960 PF03466 LysR substrate binding domain AL536_06960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_06970 PF00005 ABC transporter AL536_06975 PF01032 FecCD transport family AL536_06980 PF01032 FecCD transport family AL536_06985 PF01497 Periplasmic binding protein AL536_06990 PF07715 TonB-dependent Receptor Plug Domain AL536_06990 PF00593 TonB dependent receptor AL536_07015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_07015 PF00672 HAMP domain AL536_07020 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AL536_07025 PF03466 LysR substrate binding domain AL536_07025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_07035 PF02001 Protein of unknown function DUF134 AL536_07040 PF00881 Nitroreductase family AL536_07045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_07045 PF03466 LysR substrate binding domain AL536_07050 PF00155 Aminotransferase class I and II AL536_07055 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL536_07060 PF00892 EamA-like transporter family AL536_07065 PF00462 Glutaredoxin AL536_07075 PF07690 Major Facilitator Superfamily AL536_07080 PF03466 LysR substrate binding domain AL536_07080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_07085 PF13188 PAS domain AL536_07085 PF03707 Bacterial signalling protein N terminal repeat AL536_07085 PF00563 EAL domain AL536_07085 PF00990 Diguanylate cyclase, GGDEF domain AL536_07090 PF01551 Peptidase family M23 AL536_07090 PF01476 LysM domain AL536_07090 PF08525 Opacity-associated protein A N-terminal motif AL536_07105 PF00916 Sulfate permease family AL536_07105 PF01740 STAS domain AL536_07120 PF17152 Periplasmic sensor domain AL536_07120 PF00990 Diguanylate cyclase, GGDEF domain AL536_07125 PF00005 ABC transporter AL536_07130 PF00528 Binding-protein-dependent transport system inner membrane component AL536_07135 PF00528 Binding-protein-dependent transport system inner membrane component AL536_07140 PF12849 PBP superfamily domain AL536_07145 PF12729 Four helix bundle sensory module for signal transduction AL536_07145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_07145 PF00672 HAMP domain AL536_07150 PF00271 Helicase conserved C-terminal domain AL536_07150 PF00270 DEAD/DEAH box helicase AL536_07160 PF01476 LysM domain AL536_07160 PF03734 L,D-transpeptidase catalytic domain AL536_07160 PF17969 L,D-transpeptidase C-terminal domain AL536_07165 PF00875 DNA photolyase AL536_07165 PF03441 FAD binding domain of DNA photolyase AL536_07170 PF13411 MerR HTH family regulatory protein AL536_07175 PF08349 Protein of unknown function (DUF1722) AL536_07180 PF01048 Phosphorylase superfamily AL536_07195 PF00990 Diguanylate cyclase, GGDEF domain AL536_07200 PF11742 Protein of unknown function (DUF3302) AL536_07205 PF00529 HlyD membrane-fusion protein of T1SS AL536_07205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL536_07235 PF07238 PilZ domain AL536_07235 PF12945 Flagellar protein YcgR AL536_07240 PF03616 Sodium/glutamate symporter AL536_07255 PF02630 SCO1/SenC AL536_07265 PF03193 RsgA GTPase AL536_07270 PF00375 Sodium:dicarboxylate symporter family AL536_07280 PF07148 Maltose operon periplasmic protein precursor (MalM) AL536_07285 PF02264 LamB porin AL536_07290 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL536_07290 PF00128 Alpha amylase, catalytic domain AL536_07305 PF00005 ABC transporter AL536_07305 PF00664 ABC transporter transmembrane region AL536_07315 PF01569 PAP2 superfamily AL536_07325 PF00384 Molybdopterin oxidoreductase AL536_07325 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL536_07325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL536_07325 PF12838 4Fe-4S dicluster domain AL536_07325 PF01568 Molydopterin dinucleotide binding domain AL536_07330 PF00491 Arginase family AL536_07340 PF00672 HAMP domain AL536_07340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_07340 PF17200 Single Cache domain 2 AL536_07350 PF00005 ABC transporter AL536_07355 PF00392 Bacterial regulatory proteins, gntR family AL536_07355 PF07702 UTRA domain AL536_07360 PF00704 Glycosyl hydrolases family 18 AL536_07360 PF08329 Chitinase A, N-terminal domain AL536_07365 PF01212 Beta-eliminating lyase AL536_07370 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL536_07375 PF01966 HD domain AL536_07385 PF00939 Sodium:sulfate symporter transmembrane region AL536_07410 PF01124 MAPEG family AL536_07420 PF01476 LysM domain AL536_07430 PF04717 Type VI secretion system, phage-baseplate injector AL536_07430 PF16671 Actin cross-linking domain AL536_07435 PF05638 Type VI secretion system effector, Hcp AL536_07440 PF00128 Alpha amylase, catalytic domain AL536_07440 PF02806 Alpha amylase, C-terminal all-beta domain AL536_07440 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL536_07445 PF02446 4-alpha-glucanotransferase AL536_07450 PF00343 Carbohydrate phosphorylase AL536_07455 PF00196 Bacterial regulatory proteins, luxR family AL536_07455 PF17874 MalT-like TPR region AL536_07460 PF10928 Protein of unknown function (DUF2810) AL536_07465 PF01040 UbiA prenyltransferase family AL536_07470 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AL536_07475 PF00510 Cytochrome c oxidase subunit III AL536_07480 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL536_07485 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL536_07485 PF06481 COX Aromatic Rich Motif AL536_07495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_07495 PF17200 Single Cache domain 2 AL536_07495 PF00672 HAMP domain AL536_07500 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL536_07500 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL536_07505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_07505 PF03466 LysR substrate binding domain AL536_07515 PF01709 Transcriptional regulator AL536_07540 PF18607 ParA helix turn helix domain AL536_07540 PF13614 AAA domain AL536_07545 PF08775 ParB family AL536_07545 PF02195 ParB-like nuclease domain AL536_07550 PF13416 Bacterial extracellular solute-binding protein AL536_07555 PF13718 GNAT acetyltransferase 2 AL536_07555 PF05127 Helicase AL536_07565 PF00072 Response regulator receiver domain AL536_07570 PF02895 Signal transducing histidine kinase, homodimeric domain AL536_07570 PF01627 Hpt domain AL536_07570 PF09078 CheY binding AL536_07570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_07570 PF01584 CheW-like domain AL536_07575 PF01584 CheW-like domain AL536_07580 PF01584 CheW-like domain AL536_07585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_07585 PF02203 Tar ligand binding domain homologue AL536_07585 PF00672 HAMP domain AL536_07590 PF03705 CheR methyltransferase, all-alpha domain AL536_07590 PF01739 CheR methyltransferase, SAM binding domain AL536_07595 PF03975 CheD chemotactic sensory transduction AL536_07600 PF00072 Response regulator receiver domain AL536_07600 PF01339 CheB methylesterase AL536_07605 PF00672 HAMP domain AL536_07605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_07605 PF02743 Cache domain AL536_07615 PF00486 Transcriptional regulatory protein, C terminal AL536_07615 PF00072 Response regulator receiver domain AL536_07625 PF00664 ABC transporter transmembrane region AL536_07625 PF00005 ABC transporter AL536_07625 PF03412 Peptidase C39 family AL536_07640 PF00529 HlyD membrane-fusion protein of T1SS AL536_07645 PF01243 Pyridoxamine 5'-phosphate oxidase AL536_07645 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL536_07650 PF00072 Response regulator receiver domain AL536_07650 PF00196 Bacterial regulatory proteins, luxR family AL536_07655 PF03781 Sulfatase-modifying factor enzyme 1 AL536_07665 PF12833 Helix-turn-helix domain AL536_07670 PF01553 Acyltransferase AL536_07675 PF01042 Endoribonuclease L-PSP AL536_07680 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL536_07680 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL536_07685 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL536_07685 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL536_07690 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL536_07690 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL536_07695 PF02562 PhoH-like protein AL536_07695 PF13638 PIN domain AL536_07700 PF00176 SNF2 family N-terminal domain AL536_07700 PF18339 RapA N-terminal Tudor like domain 1 AL536_07700 PF00271 Helicase conserved C-terminal domain AL536_07700 PF12137 RNA polymerase recycling family C-terminal AL536_07700 PF18337 RapA N-terminal Tudor like domain AL536_07710 PF00849 RNA pseudouridylate synthase AL536_07715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL536_07715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL536_07720 PF08264 Anticodon-binding domain of tRNA AL536_07720 PF00133 tRNA synthetases class I (I, L, M and V) AL536_07720 PF10458 Valyl tRNA synthetase tRNA binding arm AL536_07730 PF02789 Cytosol aminopeptidase family, N-terminal domain AL536_07730 PF00883 Cytosol aminopeptidase family, catalytic domain AL536_07735 PF03739 Lipopolysaccharide export system permease LptF/LptG AL536_07740 PF03739 Lipopolysaccharide export system permease LptF/LptG AL536_07755 PF07694 5TMR of 5TMR-LYT AL536_07755 PF00990 Diguanylate cyclase, GGDEF domain AL536_07780 PF01590 GAF domain AL536_07780 PF00990 Diguanylate cyclase, GGDEF domain AL536_07780 PF00563 EAL domain AL536_07780 PF00989 PAS fold AL536_07790 PF00072 Response regulator receiver domain AL536_07840 PF00330 Aconitase family (aconitate hydratase) AL536_07845 PF00180 Isocitrate/isopropylmalate dehydrogenase AL536_07850 PF00682 HMGL-like AL536_07850 PF08502 LeuA allosteric (dimerisation) domain AL536_07860 PF01569 PAP2 superfamily AL536_07870 PF03466 LysR substrate binding domain AL536_07870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_07875 PF00501 AMP-binding enzyme AL536_07880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL536_07880 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL536_07880 PF00205 Thiamine pyrophosphate enzyme, central domain AL536_07885 PF10369 Small subunit of acetolactate synthase AL536_07890 PF01842 ACT domain AL536_07890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL536_07890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL536_07895 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL536_07900 PF01812 5-formyltetrahydrofolate cyclo-ligase family AL536_07910 PF05164 Cell division protein ZapA AL536_07915 PF03695 Uncharacterised protein family (UPF0149) AL536_07920 PF01494 FAD binding domain AL536_07925 PF01494 FAD binding domain AL536_07935 PF04073 Aminoacyl-tRNA editing domain AL536_07935 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL536_07935 PF03129 Anticodon binding domain AL536_07945 PF03937 Flavinator of succinate dehydrogenase AL536_07955 PF02910 Fumarate reductase flavoprotein C-term AL536_07955 PF00890 FAD binding domain AL536_07960 PF04542 Sigma-70 region 2 AL536_07960 PF08281 Sigma-70, region 4 AL536_07965 PF03872 Anti sigma-E protein RseA, N-terminal domain AL536_07965 PF03873 Anti sigma-E protein RseA, C-terminal domain AL536_07970 PF17188 MucB/RseB C-terminal domain AL536_07970 PF03888 MucB/RseB N-terminal domain AL536_07980 PF00009 Elongation factor Tu GTP binding domain AL536_07980 PF00679 Elongation factor G C-terminus AL536_07980 PF03144 Elongation factor Tu domain 2 AL536_07980 PF06421 GTP-binding protein LepA C-terminus AL536_07985 PF10502 Signal peptidase, peptidase S26 AL536_07990 PF00035 Double-stranded RNA binding motif AL536_07990 PF14622 Ribonuclease-III-like AL536_07995 PF01926 50S ribosome-binding GTPase AL536_07995 PF07650 KH domain AL536_08000 PF11967 Recombination protein O N terminal AL536_08000 PF02565 Recombination protein O C terminal AL536_08005 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL536_08010 PF01648 4'-phosphopantetheinyl transferase superfamily AL536_08015 PF00072 Response regulator receiver domain AL536_08015 PF00512 His Kinase A (phospho-acceptor) domain AL536_08015 PF01627 Hpt domain AL536_08015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_08015 PF00672 HAMP domain AL536_08015 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL536_08020 PF01938 TRAM domain AL536_08020 PF05958 tRNA (Uracil-5-)-methyltransferase AL536_08025 PF02824 TGS domain AL536_08025 PF04607 Region found in RelA / SpoT proteins AL536_08025 PF13291 ACT domain AL536_08030 PF03819 MazG nucleotide pyrophosphohydrolase domain AL536_08035 PF00117 Glutamine amidotransferase class-I AL536_08035 PF06418 CTP synthase N-terminus AL536_08040 PF00113 Enolase, C-terminal TIM barrel domain AL536_08040 PF03952 Enolase, N-terminal domain AL536_08045 PF01966 HD domain AL536_08045 PF01743 Poly A polymerase head domain AL536_08045 PF12627 Probable RNA and SrmB- binding site of polymerase A AL536_08050 PF13401 AAA domain AL536_08050 PF01471 Putative peptidoglycan binding domain AL536_08060 PF08239 Bacterial SH3 domain AL536_08065 PF01384 Phosphate transporter family AL536_08070 PF01865 Protein of unknown function DUF47 AL536_08075 PF01928 CYTH domain AL536_08080 PF00520 Ion transport protein AL536_08080 PF00027 Cyclic nucleotide-binding domain AL536_08085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_08085 PF00672 HAMP domain AL536_08090 PF03710 Glutamate-ammonia ligase adenylyltransferase AL536_08090 PF08335 GlnD PII-uridylyltransferase AL536_08095 PF00294 pfkB family carbohydrate kinase AL536_08095 PF01467 Cytidylyltransferase-like AL536_08100 PF02321 Outer membrane efflux protein AL536_08105 PF00293 NUDIX domain AL536_08110 PF06853 Protein of unknown function (DUF1249) AL536_08115 PF00149 Calcineurin-like phosphoesterase AL536_08120 PF05728 Uncharacterised protein family (UPF0227) AL536_08125 PF00204 DNA gyrase B AL536_08125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_08125 PF00986 DNA gyrase B subunit, carboxyl terminus AL536_08125 PF01751 Toprim domain AL536_08130 PF00521 DNA gyrase/topoisomerase IV, subunit A AL536_08130 PF03989 DNA gyrase C-terminal domain, beta-propeller AL536_08135 PF03884 DNA gyrase inhibitor YacG AL536_08140 PF07072 Cell division protein AL536_08145 PF01121 Dephospho-CoA kinase AL536_08150 PF06750 Bacterial Peptidase A24 N-terminal domain AL536_08150 PF01478 Type IV leader peptidase family AL536_08155 PF00482 Type II secretion system (T2SS), protein F AL536_08160 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL536_08160 PF00437 Type II/IV secretion system protein AL536_08165 PF07963 Prokaryotic N-terminal methylation motif AL536_08165 PF00114 Pilin (bacterial filament) AL536_08170 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL536_08170 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL536_08175 PF01510 N-acetylmuramoyl-L-alanine amidase AL536_08180 PF00258 Flavodoxin AL536_08185 PF02899 Phage integrase, N-terminal SAM-like domain AL536_08185 PF00589 Phage integrase family AL536_08190 PF10411 Disulfide bond isomerase protein N-terminus AL536_08190 PF13098 Thioredoxin-like domain AL536_08195 PF17768 RecJ OB domain AL536_08195 PF02272 DHHA1 domain AL536_08195 PF01368 DHH family AL536_08200 PF07729 FCD domain AL536_08200 PF00392 Bacterial regulatory proteins, gntR family AL536_08205 PF00456 Transketolase, thiamine diphosphate binding domain AL536_08205 PF17831 Pyruvate dehydrogenase E1 component middle domain AL536_08210 PF00364 Biotin-requiring enzyme AL536_08210 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL536_08210 PF02817 e3 binding domain AL536_08215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL536_08215 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_08220 PF00440 Bacterial regulatory proteins, tetR family AL536_08225 PF00156 Phosphoribosyl transferase domain AL536_08230 PF00484 Carbonic anhydrase AL536_08235 PF00005 ABC transporter AL536_08240 PF01061 ABC-2 type transporter AL536_08245 PF02569 Pantoate-beta-alanine ligase AL536_08250 PF02548 Ketopantoate hydroxymethyltransferase AL536_08255 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL536_08260 PF12626 Polymerase A arginine-rich C-terminus AL536_08260 PF01743 Poly A polymerase head domain AL536_08260 PF12627 Probable RNA and SrmB- binding site of polymerase A AL536_08265 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL536_08270 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL536_08275 PF03749 Sugar fermentation stimulation protein RE domain AL536_08275 PF17746 SfsA N-terminal OB domain AL536_08280 PF08482 ATP-dependent helicase C-terminal AL536_08280 PF00271 Helicase conserved C-terminal domain AL536_08280 PF04408 Helicase associated domain (HA2) AL536_08280 PF00270 DEAD/DEAH box helicase AL536_08285 PF00912 Transglycosylase AL536_08285 PF14814 Bifunctional transglycosylase second domain AL536_08285 PF00905 Penicillin binding protein transpeptidase domain AL536_08290 PF01734 Patatin-like phospholipase AL536_08295 PF11791 Aconitate B N-terminal domain AL536_08295 PF06434 Aconitate hydratase 2 N-terminus AL536_08295 PF00330 Aconitase family (aconitate hydratase) AL536_08300 PF06062 Uncharacterised protein family (UPF0231) AL536_08305 PF00543 Nitrogen regulatory protein P-II AL536_08310 PF00909 Ammonium Transporter Family AL536_08315 PF13416 Bacterial extracellular solute-binding protein AL536_08325 PF08402 TOBE domain AL536_08325 PF00005 ABC transporter AL536_08330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL536_08330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL536_08330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL536_08330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL536_08335 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL536_08335 PF06165 Glycosyltransferase family 36 AL536_08340 PF00728 Glycosyl hydrolase family 20, catalytic domain AL536_08340 PF02838 Glycosyl hydrolase family 20, domain 2 AL536_08345 PF01869 BadF/BadG/BcrA/BcrD ATPase family AL536_08355 PF00005 ABC transporter AL536_08355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL536_08360 PF00005 ABC transporter AL536_08360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL536_08365 PF00528 Binding-protein-dependent transport system inner membrane component AL536_08365 PF12911 N-terminal TM domain of oligopeptide transport permease C AL536_08370 PF00528 Binding-protein-dependent transport system inner membrane component AL536_08375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL536_08380 PF09308 LuxQ, periplasmic AL536_08380 PF00072 Response regulator receiver domain AL536_08380 PF00512 His Kinase A (phospho-acceptor) domain AL536_08380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_08385 PF08468 Methyltransferase small domain N-terminal AL536_08385 PF05175 Methyltransferase small domain AL536_08390 PF01594 AI-2E family transporter AL536_08395 PF00202 Aminotransferase class-III AL536_08400 PF01521 Iron-sulphur cluster biosynthesis AL536_08410 PF00873 AcrB/AcrD/AcrF family AL536_08415 PF01551 Peptidase family M23 AL536_08415 PF04225 Opacity-associated protein A LysM-like domain AL536_08420 PF00579 tRNA synthetases class I (W and Y) AL536_08420 PF01479 S4 domain AL536_08430 PF03448 MgtE intracellular N domain AL536_08430 PF00571 CBS domain AL536_08430 PF01769 Divalent cation transporter AL536_08435 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL536_08440 PF13609 Gram-negative porin AL536_08445 PF01272 Transcription elongation factor, GreA/GreB, C-term AL536_08445 PF03449 Transcription elongation factor, N-terminal AL536_08450 PF01985 CRS1 / YhbY (CRM) domain AL536_08455 PF01728 FtsJ-like methyltransferase AL536_08460 PF00004 ATPase family associated with various cellular activities (AAA) AL536_08460 PF17862 AAA+ lid domain AL536_08460 PF06480 FtsH Extracellular AL536_08460 PF01434 Peptidase family M41 AL536_08465 PF00809 Pterin binding enzyme AL536_08470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL536_08470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL536_08470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL536_08470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL536_08475 PF03840 Preprotein translocase SecG subunit AL536_08490 PF17384 RimP C-terminal SH3 domain AL536_08490 PF02576 RimP N-terminal domain AL536_08495 PF08529 NusA N-terminal domain AL536_08495 PF00575 S1 RNA binding domain AL536_08495 PF13184 NusA-like KH domain AL536_08500 PF04760 Translation initiation factor IF-2, N-terminal region AL536_08500 PF11987 Translation-initiation factor 2 AL536_08500 PF08364 Bacterial translation initiation factor IF-2 associated region AL536_08500 PF00009 Elongation factor Tu GTP binding domain AL536_08505 PF02033 Ribosome-binding factor A AL536_08510 PF09157 Pseudouridine synthase II TruB, C-terminal AL536_08510 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL536_08510 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL536_08515 PF00312 Ribosomal protein S15 AL536_08520 PF01138 3' exoribonuclease family, domain 1 AL536_08520 PF00013 KH domain AL536_08520 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL536_08520 PF00575 S1 RNA binding domain AL536_08520 PF03725 3' exoribonuclease family, domain 2 AL536_08525 PF13181 Tetratricopeptide repeat AL536_08525 PF07719 Tetratricopeptide repeat AL536_08535 PF01554 MatE AL536_08550 PF03707 Bacterial signalling protein N terminal repeat AL536_08550 PF00563 EAL domain AL536_08550 PF00990 Diguanylate cyclase, GGDEF domain AL536_08560 PF13508 Acetyltransferase (GNAT) domain AL536_08570 PF00583 Acetyltransferase (GNAT) family AL536_08575 PF03707 Bacterial signalling protein N terminal repeat AL536_08575 PF00990 Diguanylate cyclase, GGDEF domain AL536_08575 PF00563 EAL domain AL536_08580 PF03144 Elongation factor Tu domain 2 AL536_08580 PF16658 Class II release factor RF3, C-terminal domain AL536_08580 PF00009 Elongation factor Tu GTP binding domain AL536_08585 PF00270 DEAD/DEAH box helicase AL536_08585 PF00271 Helicase conserved C-terminal domain AL536_08590 PF05175 Methyltransferase small domain AL536_08595 PF05525 Branched-chain amino acid transport protein AL536_08605 PF00152 tRNA synthetases class II (D, K and N) AL536_08605 PF01336 OB-fold nucleic acid binding domain AL536_08610 PF00072 Response regulator receiver domain AL536_08610 PF00158 Sigma-54 interaction domain AL536_08610 PF02954 Bacterial regulatory protein, Fis family AL536_08620 PF00248 Aldo/keto reductase family AL536_08630 PF02976 DNA mismatch repair enzyme MutH AL536_08635 PF00293 NUDIX domain AL536_08640 PF05524 PEP-utilising enzyme, N-terminal AL536_08640 PF00391 PEP-utilising enzyme, mobile domain AL536_08640 PF02896 PEP-utilising enzyme, TIM barrel domain AL536_08640 PF01590 GAF domain AL536_08645 PF01925 Sulfite exporter TauE/SafE AL536_08650 PF01790 Prolipoprotein diacylglyceryl transferase AL536_08655 PF00303 Thymidylate synthase AL536_08660 PF02690 Na+/Pi-cotransporter AL536_08665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_08665 PF03466 LysR substrate binding domain AL536_08670 PF01022 Bacterial regulatory protein, arsR family AL536_08675 PF01649 Ribosomal protein S20 AL536_08680 PF03023 Lipid II flippase MurJ AL536_08685 PF01687 Riboflavin kinase AL536_08685 PF06574 FAD synthetase AL536_08690 PF06827 Zinc finger found in FPG and IleRS AL536_08690 PF08264 Anticodon-binding domain of tRNA AL536_08690 PF00133 tRNA synthetases class I (I, L, M and V) AL536_08695 PF01252 Signal peptidase (SPase) II AL536_08700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL536_08705 PF02401 LytB protein AL536_08710 PF02554 Carbon starvation protein CstA AL536_08725 PF13580 SIS domain AL536_08730 PF03702 Anhydro-N-acetylmuramic acid kinase AL536_08735 PF00933 Glycosyl hydrolase family 3 N terminal domain AL536_08740 PF00072 Response regulator receiver domain AL536_08740 PF04397 LytTr DNA-binding domain AL536_08745 PF06580 Histidine kinase AL536_08745 PF07694 5TMR of 5TMR-LYT AL536_08750 PF00793 DAHP synthetase I family AL536_08755 PF02153 Prephenate dehydrogenase AL536_08755 PF01817 Chorismate mutase type II AL536_08760 PF07238 PilZ domain AL536_08765 PF12848 ABC transporter AL536_08765 PF00005 ABC transporter AL536_08770 PF14718 Soluble lytic murein transglycosylase L domain AL536_08770 PF01464 Transglycosylase SLT domain AL536_08775 PF01371 Trp repressor protein AL536_08780 PF01931 Protein of unknown function DUF84 AL536_08785 PF00563 EAL domain AL536_08785 PF00990 Diguanylate cyclase, GGDEF domain AL536_08790 PF13416 Bacterial extracellular solute-binding protein AL536_08795 PF01817 Chorismate mutase type II AL536_08795 PF00800 Prephenate dehydratase AL536_08800 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL536_08805 PF01464 Transglycosylase SLT domain AL536_08805 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL536_08810 PF13525 Outer membrane lipoprotein AL536_08815 PF00849 RNA pseudouridylate synthase AL536_08815 PF01479 S4 domain AL536_08825 PF17871 AAA lid domain AL536_08825 PF07724 AAA domain (Cdc48 subfamily) AL536_08825 PF02861 Clp amino terminal domain, pathogenicity island component AL536_08825 PF00004 ATPase family associated with various cellular activities (AAA) AL536_08825 PF10431 C-terminal, D2-small domain, of ClpB protein AL536_08835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL536_08840 PF00528 Binding-protein-dependent transport system inner membrane component AL536_08845 PF00005 ABC transporter AL536_08855 PF01979 Amidohydrolase family AL536_08890 PF01738 Dienelactone hydrolase family AL536_08900 PF00881 Nitroreductase family AL536_08905 PF07690 Major Facilitator Superfamily AL536_08910 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL536_08920 PF05175 Methyltransferase small domain AL536_08925 PF01722 BolA-like protein AL536_08930 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AL536_08930 PF11973 NQRA C-terminal domain AL536_08935 PF03116 NQR2, RnfD, RnfE family AL536_08940 PF04205 FMN-binding domain AL536_08945 PF02508 Rnf-Nqr subunit, membrane protein AL536_08950 PF02508 Rnf-Nqr subunit, membrane protein AL536_08955 PF00175 Oxidoreductase NAD-binding domain AL536_08955 PF00111 2Fe-2S iron-sulfur cluster binding domain AL536_08955 PF00970 Oxidoreductase FAD-binding domain AL536_08960 PF02424 ApbE family AL536_08975 PF11799 impB/mucB/samB family C-terminal domain AL536_08975 PF00817 impB/mucB/samB family AL536_08975 PF11798 IMS family HHH motif AL536_08985 PF00990 Diguanylate cyclase, GGDEF domain AL536_08985 PF00360 Phytochrome region AL536_08985 PF00563 EAL domain AL536_08985 PF01590 GAF domain AL536_08990 PF00209 Sodium:neurotransmitter symporter family AL536_09000 PF18030 RimK PreATP-grasp domain AL536_09000 PF08443 RimK-like ATP-grasp domain AL536_09005 PF18030 RimK PreATP-grasp domain AL536_09005 PF08443 RimK-like ATP-grasp domain AL536_09010 PF01546 Peptidase family M20/M25/M40 AL536_09010 PF07687 Peptidase dimerisation domain AL536_09015 PF00155 Aminotransferase class I and II AL536_09015 PF00392 Bacterial regulatory proteins, gntR family AL536_09020 PF00202 Aminotransferase class-III AL536_09025 PF00171 Aldehyde dehydrogenase family AL536_09030 PF03480 Bacterial extracellular solute-binding protein, family 7 AL536_09040 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL536_09045 PF00860 Permease family AL536_09050 PF00156 Phosphoribosyl transferase domain AL536_09060 PF07417 Sigma factor-binding transcriptional regulator Crl AL536_09065 PF01472 PUA domain AL536_09065 PF00696 Amino acid kinase family AL536_09070 PF00171 Aldehyde dehydrogenase family AL536_09075 PF03477 ATP cone domain AL536_09080 PF01872 RibD C-terminal domain AL536_09080 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL536_09085 PF00677 Lumazine binding domain AL536_09090 PF00925 GTP cyclohydrolase II AL536_09090 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL536_09095 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL536_09100 PF01029 NusB family AL536_09105 PF02769 AIR synthase related protein, C-terminal domain AL536_09105 PF00586 AIR synthase related protein, N-terminal domain AL536_09110 PF04608 Phosphatidylglycerophosphatase A AL536_09115 PF11944 Protein of unknown function (DUF3461) AL536_09120 PF01909 Nucleotidyltransferase domain AL536_09120 PF08335 GlnD PII-uridylyltransferase AL536_09120 PF01966 HD domain AL536_09125 PF00557 Metallopeptidase family M24 AL536_09130 PF00318 Ribosomal protein S2 AL536_09135 PF00889 Elongation factor TS AL536_09140 PF00696 Amino acid kinase family AL536_09145 PF01765 Ribosome recycling factor AL536_09150 PF01255 Putative undecaprenyl diphosphate synthase AL536_09160 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL536_09160 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL536_09160 PF13288 DXP reductoisomerase C-terminal domain AL536_09165 PF17820 PDZ domain AL536_09165 PF02163 Peptidase family M50 AL536_09170 PF01103 Surface antigen AL536_09170 PF07244 Surface antigen variable number repeat AL536_09175 PF03938 Outer membrane protein (OmpH-like) AL536_09180 PF00132 Bacterial transferase hexapeptide (six repeats) AL536_09180 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL536_09185 PF07977 FabA-like domain AL536_09190 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL536_09190 PF00132 Bacterial transferase hexapeptide (six repeats) AL536_09195 PF02684 Lipid-A-disaccharide synthetase AL536_09200 PF01351 Ribonuclease HII AL536_09205 PF02811 PHP domain AL536_09205 PF14579 Helix-hairpin-helix motif AL536_09205 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL536_09205 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL536_09205 PF01336 OB-fold nucleic acid binding domain AL536_09210 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AL536_09215 PF11734 TilS substrate C-terminal domain AL536_09215 PF09179 TilS substrate binding domain AL536_09215 PF01171 PP-loop family AL536_09220 PF00034 Cytochrome c AL536_09225 PF00543 Nitrogen regulatory protein P-II AL536_09230 PF03372 Endonuclease/Exonuclease/phosphatase family AL536_09240 PF01476 LysM domain AL536_09240 PF01464 Transglycosylase SLT domain AL536_09250 PF08241 Methyltransferase domain AL536_09255 PF00075 RNase H AL536_09260 PF00929 Exonuclease AL536_09270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL536_09270 PF02770 Acyl-CoA dehydrogenase, middle domain AL536_09270 PF09317 Domain of unknown function (DUF1974) AL536_09270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL536_09275 PF13580 SIS domain AL536_09280 PF13230 Glutamine amidotransferases class-II AL536_09285 PF00551 Formyl transferase AL536_09290 PF00586 AIR synthase related protein, N-terminal domain AL536_09290 PF02769 AIR synthase related protein, C-terminal domain AL536_09300 PF01479 S4 domain AL536_09300 PF00849 RNA pseudouridylate synthase AL536_09305 PF01713 Smr domain AL536_09320 PF00728 Glycosyl hydrolase family 20, catalytic domain AL536_09320 PF02838 Glycosyl hydrolase family 20, domain 2 AL536_09320 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL536_09320 PF03173 Putative carbohydrate binding domain AL536_09330 PF00403 Heavy-metal-associated domain AL536_09335 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL536_09340 PF01389 OmpA-like transmembrane domain AL536_09340 PF00691 OmpA family AL536_09355 PF01219 Prokaryotic diacylglycerol kinase AL536_09360 PF00884 Sulfatase AL536_09360 PF08019 Phosphoethanolamine transferase EptA/EptB AL536_09395 PF04316 Anti-sigma-28 factor, FlgM AL536_09405 PF00072 Response regulator receiver domain AL536_09405 PF01584 CheW-like domain AL536_09410 PF03705 CheR methyltransferase, all-alpha domain AL536_09410 PF01739 CheR methyltransferase, SAM binding domain AL536_09415 PF00460 Flagella basal body rod protein AL536_09420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL536_09420 PF00460 Flagella basal body rod protein AL536_09425 PF13860 FlgD Ig-like domain AL536_09425 PF13861 FlgD Tudor-like domain AL536_09425 PF03963 Flagellar hook capping protein - N-terminal region AL536_09430 PF07559 Flagellar basal body protein FlaE AL536_09430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL536_09430 PF00460 Flagella basal body rod protein AL536_09435 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL536_09435 PF00460 Flagella basal body rod protein AL536_09440 PF00460 Flagella basal body rod protein AL536_09440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL536_09445 PF02107 Flagellar L-ring protein AL536_09450 PF02119 Flagellar P-ring protein AL536_09455 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL536_09455 PF10135 Rod binding protein AL536_09460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL536_09460 PF07196 Flagellin hook IN motif AL536_09470 PF07196 Flagellin hook IN motif AL536_09470 PF00700 Bacterial flagellin C-terminal helical region AL536_09470 PF00669 Bacterial flagellin N-terminal helical region AL536_09475 PF00669 Bacterial flagellin N-terminal helical region AL536_09475 PF00700 Bacterial flagellin C-terminal helical region AL536_09475 PF07196 Flagellin hook IN motif AL536_09565 PF01926 50S ribosome-binding GTPase AL536_09565 PF06071 Protein of unknown function (DUF933) AL536_09570 PF01195 Peptidyl-tRNA hydrolase AL536_09575 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL536_09575 PF14572 Phosphoribosyl synthetase-associated domain AL536_09580 PF08544 GHMP kinases C terminal AL536_09580 PF00288 GHMP kinases N terminal domain AL536_09585 PF03550 Outer membrane lipoprotein LolB AL536_09590 PF01488 Shikimate / quinate 5-dehydrogenase AL536_09590 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL536_09590 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL536_09595 PF00472 RF-1 domain AL536_09595 PF03462 PCRF domain AL536_09600 PF17827 PrmC N-terminal domain AL536_09600 PF13847 Methyltransferase domain AL536_09605 PF04247 Invasion gene expression up-regulator, SirB AL536_09610 PF13369 Transglutaminase-like superfamily AL536_09615 PF00793 DAHP synthetase I family AL536_09620 PF00149 Calcineurin-like phosphoesterase AL536_09620 PF02872 5'-nucleotidase, C-terminal domain AL536_09625 PF04073 Aminoacyl-tRNA editing domain AL536_09630 PF00860 Permease family AL536_09645 PF03358 NADPH-dependent FMN reductase AL536_09650 PF03960 ArsC family AL536_09655 PF13181 Tetratricopeptide repeat AL536_09655 PF01435 Peptidase family M48 AL536_09665 PF01594 AI-2E family transporter AL536_09670 PF00672 HAMP domain AL536_09670 PF02743 Cache domain AL536_09670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_09675 PF00578 AhpC/TSA family AL536_09680 PF01842 ACT domain AL536_09685 PF00701 Dihydrodipicolinate synthetase family AL536_09690 PF06804 NlpB/DapX lipoprotein AL536_09700 PF02557 D-alanyl-D-alanine carboxypeptidase AL536_09705 PF07687 Peptidase dimerisation domain AL536_09705 PF01546 Peptidase family M20/M25/M40 AL536_09710 PF03960 ArsC family AL536_09720 PF16363 GDP-mannose 4,6 dehydratase AL536_09725 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AL536_09725 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AL536_09730 PF10509 Galactokinase galactose-binding signature AL536_09730 PF08544 GHMP kinases C terminal AL536_09730 PF00288 GHMP kinases N terminal domain AL536_09735 PF00356 Bacterial regulatory proteins, lacI family AL536_09745 PF11143 Protein of unknown function (DUF2919) AL536_09750 PF04261 Dyp-type peroxidase family AL536_09755 PF07196 Flagellin hook IN motif AL536_09755 PF00700 Bacterial flagellin C-terminal helical region AL536_09755 PF00669 Bacterial flagellin N-terminal helical region AL536_09760 PF00700 Bacterial flagellin C-terminal helical region AL536_09760 PF07196 Flagellin hook IN motif AL536_09760 PF00669 Bacterial flagellin N-terminal helical region AL536_09765 PF00700 Bacterial flagellin C-terminal helical region AL536_09765 PF07196 Flagellin hook IN motif AL536_09765 PF00669 Bacterial flagellin N-terminal helical region AL536_09770 PF03646 FlaG protein AL536_09775 PF02465 Flagellar hook-associated protein 2 N-terminus AL536_09775 PF07196 Flagellin hook IN motif AL536_09775 PF07195 Flagellar hook-associated protein 2 C-terminus AL536_09785 PF02561 Flagellar protein FliS AL536_09790 PF00158 Sigma-54 interaction domain AL536_09790 PF00072 Response regulator receiver domain AL536_09790 PF02954 Bacterial regulatory protein, Fis family AL536_09795 PF00512 His Kinase A (phospho-acceptor) domain AL536_09795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_09800 PF02954 Bacterial regulatory protein, Fis family AL536_09800 PF00072 Response regulator receiver domain AL536_09800 PF00158 Sigma-54 interaction domain AL536_09805 PF02049 Flagellar hook-basal body complex protein FliE AL536_09810 PF08345 Flagellar M-ring protein C-terminal AL536_09810 PF01514 Secretory protein of YscJ/FliF family AL536_09815 PF01706 FliG C-terminal domain AL536_09815 PF14841 FliG middle domain AL536_09815 PF14842 FliG N-terminal domain AL536_09825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL536_09825 PF18269 T3SS EscN ATPase C-terminal domain AL536_09845 PF02154 Flagellar motor switch protein FliM AL536_09845 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL536_09850 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL536_09855 PF04347 Flagellar biosynthesis protein, FliO AL536_09860 PF00813 FliP family AL536_09865 PF01313 Bacterial export proteins, family 3 AL536_09870 PF01311 Bacterial export proteins, family 1 AL536_09875 PF01312 FlhB HrpN YscU SpaS Family AL536_09880 PF01713 Smr domain AL536_09885 PF05175 Methyltransferase small domain AL536_09890 PF01264 Chorismate synthase AL536_09895 PF03466 LysR substrate binding domain AL536_09895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_09905 PF03458 UPF0126 domain AL536_09910 PF04315 Elongation factor P hydroxylase AL536_09915 PF08891 YfcL protein AL536_09925 PF01266 FAD dependent oxidoreductase AL536_09925 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL536_09930 PF02801 Beta-ketoacyl synthase, C-terminal domain AL536_09930 PF00109 Beta-ketoacyl synthase, N-terminal domain AL536_09935 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL536_09935 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL536_09935 PF11890 Domain of unknown function (DUF3410) AL536_09940 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL536_09940 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL536_09945 PF01475 Ferric uptake regulator family AL536_09955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_09955 PF03466 LysR substrate binding domain AL536_09960 PF03788 LrgA family AL536_09965 PF04172 LrgB-like family AL536_09970 PF00258 Flavodoxin AL536_09980 PF12697 Alpha/beta hydrolase family AL536_09985 PF03925 SeqA protein C-terminal domain AL536_09985 PF17206 SeqA protein N-terminal domain AL536_09990 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL536_09990 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL536_09990 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL536_09990 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL536_10000 PF01784 NIF3 (NGG1p interacting factor 3) AL536_10005 PF00285 Citrate synthase, C-terminal domain AL536_10010 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL536_10015 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL536_10020 PF00890 FAD binding domain AL536_10020 PF02910 Fumarate reductase flavoprotein C-term AL536_10025 PF13085 2Fe-2S iron-sulfur cluster binding domain AL536_10030 PF00676 Dehydrogenase E1 component AL536_10030 PF16870 2-oxoglutarate dehydrogenase C-terminal AL536_10030 PF02779 Transketolase, pyrimidine binding domain AL536_10030 PF16078 2-oxoglutarate dehydrogenase N-terminus AL536_10035 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL536_10035 PF02817 e3 binding domain AL536_10035 PF00364 Biotin-requiring enzyme AL536_10040 PF08442 ATP-grasp domain AL536_10040 PF00549 CoA-ligase AL536_10045 PF00549 CoA-ligase AL536_10045 PF02629 CoA binding domain AL536_10050 PF00950 ABC 3 transport family AL536_10055 PF00005 ABC transporter AL536_10060 PF01297 Zinc-uptake complex component A periplasmic AL536_10065 PF12833 Helix-turn-helix domain AL536_10070 PF04023 FeoA domain AL536_10075 PF07670 Nucleoside recognition AL536_10075 PF02421 Ferrous iron transport protein B AL536_10075 PF07664 Ferrous iron transport protein B C terminus AL536_10090 PF03485 Arginyl tRNA synthetase N terminal domain AL536_10090 PF05746 DALR anticodon binding domain AL536_10090 PF00750 tRNA synthetases class I (R) AL536_10095 PF06185 YecM protein AL536_10100 PF05193 Peptidase M16 inactive domain AL536_10100 PF00675 Insulinase (Peptidase family M16) AL536_10100 PF16187 Middle or third domain of peptidase_M16 AL536_10105 PF00300 Histidine phosphatase superfamily (branch 1) AL536_10110 PF00771 FHIPEP family AL536_10115 PF00448 SRP54-type protein, GTPase domain AL536_10120 PF10609 NUBPL iron-transfer P-loop NTPase AL536_10125 PF04539 Sigma-70 region 3 AL536_10125 PF04545 Sigma-70, region 4 AL536_10125 PF04542 Sigma-70 region 2 AL536_10135 PF04344 Chemotaxis phosphatase, CheZ AL536_10140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_10140 PF02895 Signal transducing histidine kinase, homodimeric domain AL536_10140 PF07194 P2 response regulator binding domain AL536_10140 PF01584 CheW-like domain AL536_10140 PF01627 Hpt domain AL536_10145 PF01339 CheB methylesterase AL536_10145 PF00072 Response regulator receiver domain AL536_10150 PF13614 AAA domain AL536_10160 PF01584 CheW-like domain AL536_10170 PF00005 ABC transporter AL536_10175 PF03379 CcmB protein AL536_10180 PF01578 Cytochrome C assembly protein AL536_10185 PF04995 Heme exporter protein D (CcmD) AL536_10190 PF03100 CcmE AL536_10195 PF01578 Cytochrome C assembly protein AL536_10195 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL536_10200 PF08534 Redoxin AL536_10205 PF03918 Cytochrome C biogenesis protein AL536_10210 PF03918 Cytochrome C biogenesis protein AL536_10215 PF04333 MlaA lipoprotein AL536_10230 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL536_10230 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL536_10235 PF00462 Glutaredoxin AL536_10240 PF01131 DNA topoisomerase AL536_10240 PF01751 Toprim domain AL536_10245 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AL536_10245 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AL536_10250 PF01494 FAD binding domain AL536_10255 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL536_10270 PF00248 Aldo/keto reductase family AL536_10275 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL536_10285 PF03466 LysR substrate binding domain AL536_10285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_10290 PF04909 Amidohydrolase AL536_10295 PF03737 Aldolase/RraA AL536_10300 PF04303 PrpF protein AL536_10305 PF04909 Amidohydrolase AL536_10315 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AL536_10330 PF01970 Tripartite tricarboxylate transporter TctA family AL536_10335 PF01488 Shikimate / quinate 5-dehydrogenase AL536_10335 PF08501 Shikimate dehydrogenase substrate binding domain AL536_10335 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL536_10340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL536_10350 PF00850 Histone deacetylase domain AL536_10360 PF00155 Aminotransferase class I and II AL536_10380 PF00884 Sulfatase AL536_10380 PF11893 Domain of unknown function (DUF3413) AL536_10385 PF07208 Protein of unknown function (DUF1414) AL536_10390 PF04245 37-kD nucleoid-associated bacterial protein AL536_10400 PF03553 Na+/H+ antiporter family AL536_10405 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL536_10405 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL536_10410 PF00520 Ion transport protein AL536_10410 PF00027 Cyclic nucleotide-binding domain AL536_10415 PF01914 MarC family integral membrane protein AL536_10420 PF00171 Aldehyde dehydrogenase family AL536_10420 PF00465 Iron-containing alcohol dehydrogenase AL536_10430 PF01740 STAS domain AL536_10430 PF00916 Sulfate permease family AL536_10440 PF12111 Polyribonucleotide phosphorylase C terminal AL536_10440 PF00575 S1 RNA binding domain AL536_10440 PF10150 Ribonuclease E/G family AL536_10445 PF00849 RNA pseudouridylate synthase AL536_10445 PF01479 S4 domain AL536_10450 PF02545 Maf-like protein AL536_10455 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL536_10460 PF01783 Ribosomal L32p protein family AL536_10465 PF02504 Fatty acid synthesis protein AL536_10470 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL536_10470 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL536_10475 PF00698 Acyl transferase domain AL536_10485 PF00550 Phosphopantetheine attachment site AL536_10490 PF00109 Beta-ketoacyl synthase, N-terminal domain AL536_10490 PF02801 Beta-ketoacyl synthase, C-terminal domain AL536_10495 PF01063 Amino-transferase class IV AL536_10500 PF02618 YceG-like family AL536_10505 PF02223 Thymidylate kinase AL536_10510 PF09115 DNA polymerase III, delta subunit, C terminal AL536_10515 PF01026 TatD related DNase AL536_10520 PF00367 phosphotransferase system, EIIB AL536_10520 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL536_10520 PF02378 Phosphotransferase system, EIIC AL536_10530 PF02378 Phosphotransferase system, EIIC AL536_10530 PF00367 phosphotransferase system, EIIB AL536_10540 PF00209 Sodium:neurotransmitter symporter family AL536_10550 PF01734 Patatin-like phospholipase AL536_10555 PF02887 Pyruvate kinase, alpha/beta domain AL536_10555 PF00224 Pyruvate kinase, barrel domain AL536_10560 PF00480 ROK family AL536_10565 PF00072 Response regulator receiver domain AL536_10565 PF01584 CheW-like domain AL536_10570 PF14579 Helix-hairpin-helix motif AL536_10570 PF02811 PHP domain AL536_10570 PF01336 OB-fold nucleic acid binding domain AL536_10570 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL536_10570 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL536_10585 PF00106 short chain dehydrogenase AL536_10590 PF08496 Peptidase family S49 N-terminal AL536_10590 PF01343 Peptidase family S49 AL536_10640 PF13286 Phosphohydrolase-associated domain AL536_10640 PF01966 HD domain AL536_10650 PF00155 Aminotransferase class I and II AL536_10655 PF00425 chorismate binding enzyme AL536_10660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL536_10660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL536_10660 PF16582 Middle domain of thiamine pyrophosphate AL536_10665 PF12697 Alpha/beta hydrolase family AL536_10670 PF00378 Enoyl-CoA hydratase/isomerase AL536_10675 PF13378 Enolase C-terminal domain-like AL536_10680 PF00501 AMP-binding enzyme AL536_10680 PF13193 AMP-binding enzyme C-terminal domain AL536_10690 PF03601 Conserved hypothetical protein 698 AL536_10695 PF07690 Major Facilitator Superfamily AL536_10715 PF06445 GyrI-like small molecule binding domain AL536_10720 PF01464 Transglycosylase SLT domain AL536_10720 PF01476 LysM domain AL536_10740 PF00460 Flagella basal body rod protein AL536_10745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL536_10745 PF00460 Flagella basal body rod protein AL536_10750 PF03963 Flagellar hook capping protein - N-terminal region AL536_10750 PF13860 FlgD Ig-like domain AL536_10750 PF13861 FlgD Tudor-like domain AL536_10755 PF00460 Flagella basal body rod protein AL536_10755 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL536_10755 PF07559 Flagellar basal body protein FlaE AL536_10760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL536_10760 PF00460 Flagella basal body rod protein AL536_10765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL536_10765 PF00460 Flagella basal body rod protein AL536_10770 PF02107 Flagellar L-ring protein AL536_10775 PF02119 Flagellar P-ring protein AL536_10780 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL536_10780 PF10135 Rod binding protein AL536_10785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL536_10785 PF00460 Flagella basal body rod protein AL536_10830 PF01370 NAD dependent epimerase/dehydratase family AL536_10835 PF04170 NlpE N-terminal domain AL536_10845 PF00691 OmpA family AL536_10845 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL536_10850 PF01618 MotA/TolQ/ExbB proton channel family AL536_10855 PF04545 Sigma-70, region 4 AL536_10855 PF04542 Sigma-70 region 2 AL536_10860 PF03748 Flagellar basal body-associated protein FliL AL536_10880 PF07196 Flagellin hook IN motif AL536_10880 PF02465 Flagellar hook-associated protein 2 N-terminus AL536_10880 PF07195 Flagellar hook-associated protein 2 C-terminus AL536_10885 PF00669 Bacterial flagellin N-terminal helical region AL536_10885 PF00700 Bacterial flagellin C-terminal helical region AL536_10895 PF00771 FHIPEP family AL536_10900 PF01312 FlhB HrpN YscU SpaS Family AL536_10905 PF01311 Bacterial export proteins, family 1 AL536_10910 PF01313 Bacterial export proteins, family 3 AL536_10915 PF00813 FliP family AL536_10920 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL536_10930 PF05736 OprF membrane domain AL536_10930 PF00691 OmpA family AL536_10935 PF00158 Sigma-54 interaction domain AL536_10935 PF00072 Response regulator receiver domain AL536_10935 PF02954 Bacterial regulatory protein, Fis family AL536_10940 PF02049 Flagellar hook-basal body complex protein FliE AL536_10945 PF01514 Secretory protein of YscJ/FliF family AL536_10945 PF08345 Flagellar M-ring protein C-terminal AL536_10950 PF14842 FliG N-terminal domain AL536_10950 PF01706 FliG C-terminal domain AL536_10950 PF14841 FliG middle domain AL536_10960 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL536_10960 PF18269 T3SS EscN ATPase C-terminal domain AL536_10970 PF00291 Pyridoxal-phosphate dependent enzyme AL536_10975 PF01037 Lrp/AsnC ligand binding domain AL536_10975 PF13404 AsnC-type helix-turn-helix domain AL536_10985 PF09619 Type III secretion system lipoprotein chaperone (YscW) AL536_10990 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL536_11000 PF13185 GAF domain AL536_11000 PF00990 Diguanylate cyclase, GGDEF domain AL536_11085 PF17874 MalT-like TPR region AL536_11085 PF00196 Bacterial regulatory proteins, luxR family AL536_11110 PF01590 GAF domain AL536_11110 PF00360 Phytochrome region AL536_11110 PF00990 Diguanylate cyclase, GGDEF domain AL536_11110 PF00563 EAL domain AL536_11160 PF03358 NADPH-dependent FMN reductase AL536_11165 PF00892 EamA-like transporter family AL536_11175 PF00313 'Cold-shock' DNA-binding domain AL536_11190 PF03358 NADPH-dependent FMN reductase AL536_11195 PF02311 AraC-like ligand binding domain AL536_11195 PF12833 Helix-turn-helix domain AL536_11200 PF00155 Aminotransferase class I and II AL536_11200 PF00392 Bacterial regulatory proteins, gntR family AL536_11205 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AL536_11205 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AL536_11205 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AL536_11210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL536_11215 PF01161 Phosphatidylethanolamine-binding protein AL536_11220 PF12833 Helix-turn-helix domain AL536_11240 PF01588 Putative tRNA binding domain AL536_11240 PF09334 tRNA synthetases class I (M) AL536_11250 PF00873 AcrB/AcrD/AcrF family AL536_11255 PF11604 Copper binding periplasmic protein CusF AL536_11270 PF08521 Two-component sensor kinase N-terminal AL536_11270 PF00512 His Kinase A (phospho-acceptor) domain AL536_11270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_11275 PF00486 Transcriptional regulatory protein, C terminal AL536_11275 PF00072 Response regulator receiver domain AL536_11280 PF01569 PAP2 superfamily AL536_11290 PF00270 DEAD/DEAH box helicase AL536_11290 PF00271 Helicase conserved C-terminal domain AL536_11295 PF00884 Sulfatase AL536_11300 PF01219 Prokaryotic diacylglycerol kinase AL536_11305 PF08019 Phosphoethanolamine transferase EptA/EptB AL536_11305 PF00884 Sulfatase AL536_11325 PF00196 Bacterial regulatory proteins, luxR family AL536_11325 PF00072 Response regulator receiver domain AL536_11330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_11330 PF00512 His Kinase A (phospho-acceptor) domain AL536_11335 PF13247 4Fe-4S dicluster domain AL536_11340 PF03916 Polysulphide reductase, NrfD AL536_11345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL536_11345 PF01568 Molydopterin dinucleotide binding domain AL536_11345 PF00384 Molybdopterin oxidoreductase AL536_11350 PF00034 Cytochrome c AL536_11355 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL536_11365 PF03707 Bacterial signalling protein N terminal repeat AL536_11365 PF00990 Diguanylate cyclase, GGDEF domain AL536_11365 PF00563 EAL domain AL536_11370 PF00392 Bacterial regulatory proteins, gntR family AL536_11370 PF00155 Aminotransferase class I and II AL536_11375 PF01654 Cytochrome bd terminal oxidase subunit I AL536_11380 PF02322 Cytochrome bd terminal oxidase subunit II AL536_11410 PF00999 Sodium/hydrogen exchanger family AL536_11410 PF02254 TrkA-N domain AL536_11415 PF02525 Flavodoxin-like fold AL536_11420 PF07690 Major Facilitator Superfamily AL536_11425 PF00550 Phosphopantetheine attachment site AL536_11425 PF00857 Isochorismatase family AL536_11430 PF13193 AMP-binding enzyme C-terminal domain AL536_11430 PF00501 AMP-binding enzyme AL536_11435 PF00425 chorismate binding enzyme AL536_11445 PF00793 DAHP synthetase I family AL536_11450 PF00668 Condensation domain AL536_11450 PF08242 Methyltransferase domain AL536_11450 PF00550 Phosphopantetheine attachment site AL536_11450 PF00501 AMP-binding enzyme AL536_11455 PF00501 AMP-binding enzyme AL536_11455 PF13193 AMP-binding enzyme C-terminal domain AL536_11455 PF00668 Condensation domain AL536_11455 PF00550 Phosphopantetheine attachment site AL536_11460 PF00296 Luciferase-like monooxygenase AL536_11465 PF01497 Periplasmic binding protein AL536_11470 PF01032 FecCD transport family AL536_11475 PF01032 FecCD transport family AL536_11480 PF07715 TonB-dependent Receptor Plug Domain AL536_11490 PF00501 AMP-binding enzyme AL536_11490 PF00668 Condensation domain AL536_11490 PF00550 Phosphopantetheine attachment site AL536_11490 PF00975 Thioesterase domain AL536_11490 PF13193 AMP-binding enzyme C-terminal domain AL536_11495 PF00005 ABC transporter AL536_11505 PF00356 Bacterial regulatory proteins, lacI family AL536_11510 PF00232 Glycosyl hydrolase family 1 AL536_11515 PF02678 Pirin AL536_11515 PF17954 Quercetinase C-terminal cupin domain AL536_11520 PF02581 Thiamine monophosphate synthase AL536_11525 PF02110 Hydroxyethylthiazole kinase family AL536_11530 PF08543 Phosphomethylpyrimidine kinase AL536_11535 PF00005 ABC transporter AL536_11535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL536_11540 PF00528 Binding-protein-dependent transport system inner membrane component AL536_11540 PF12911 N-terminal TM domain of oligopeptide transport permease C AL536_11545 PF00528 Binding-protein-dependent transport system inner membrane component AL536_11550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL536_11560 PF02321 Outer membrane efflux protein AL536_11565 PF00529 HlyD membrane-fusion protein of T1SS AL536_11565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL536_11570 PF07690 Major Facilitator Superfamily AL536_11575 PF06445 GyrI-like small molecule binding domain AL536_11575 PF12833 Helix-turn-helix domain AL536_11580 PF00593 TonB dependent receptor AL536_11580 PF07715 TonB-dependent Receptor Plug Domain AL536_11585 PF00486 Transcriptional regulatory protein, C terminal AL536_11585 PF00072 Response regulator receiver domain AL536_11590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_11590 PF00512 His Kinase A (phospho-acceptor) domain AL536_11595 PF00367 phosphotransferase system, EIIB AL536_11595 PF02378 Phosphotransferase system, EIIC AL536_11600 PF00356 Bacterial regulatory proteins, lacI family AL536_11605 PF08244 Glycosyl hydrolases family 32 C terminal AL536_11605 PF00251 Glycosyl hydrolases family 32 N-terminal domain AL536_11610 PF00990 Diguanylate cyclase, GGDEF domain AL536_11610 PF13426 PAS domain AL536_11610 PF00563 EAL domain AL536_11615 PF11471 Maltoporin periplasmic N-terminal extension AL536_11615 PF02264 LamB porin AL536_11620 PF00294 pfkB family carbohydrate kinase AL536_11630 PF00109 Beta-ketoacyl synthase, N-terminal domain AL536_11630 PF02801 Beta-ketoacyl synthase, C-terminal domain AL536_11645 PF02801 Beta-ketoacyl synthase, C-terminal domain AL536_11645 PF00109 Beta-ketoacyl synthase, N-terminal domain AL536_11670 PF00221 Aromatic amino acid lyase AL536_11675 PF00535 Glycosyl transferase family 2 AL536_11685 PF00501 AMP-binding enzyme AL536_11685 PF13193 AMP-binding enzyme C-terminal domain AL536_11695 PF00550 Phosphopantetheine attachment site AL536_11700 PF00550 Phosphopantetheine attachment site AL536_11705 PF13193 AMP-binding enzyme C-terminal domain AL536_11705 PF00501 AMP-binding enzyme AL536_11705 PF01553 Acyltransferase AL536_11725 PF04820 Tryptophan halogenase AL536_11730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL536_11735 PF00528 Binding-protein-dependent transport system inner membrane component AL536_11740 PF00528 Binding-protein-dependent transport system inner membrane component AL536_11740 PF12911 N-terminal TM domain of oligopeptide transport permease C AL536_11745 PF00005 ABC transporter AL536_11745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL536_11750 PF00005 ABC transporter AL536_11750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL536_11760 PF13409 Glutathione S-transferase, N-terminal domain AL536_11765 PF13194 Domain of unknown function (DUF4010) AL536_11770 PF01515 Phosphate acetyl/butaryl transferase AL536_11770 PF07085 DRTGG domain AL536_11775 PF00871 Acetokinase family AL536_11780 PF04217 Protein of unknown function, DUF412 AL536_11790 PF02653 Branched-chain amino acid transport system / permease component AL536_11795 PF00005 ABC transporter AL536_11800 PF05230 MASE2 domain AL536_11800 PF00990 Diguanylate cyclase, GGDEF domain AL536_11805 PF01207 Dihydrouridine synthase (Dus) AL536_11815 PF01043 SecA preprotein cross-linking domain AL536_11815 PF02810 SEC-C motif AL536_11815 PF07516 SecA Wing and Scaffold domain AL536_11815 PF07517 SecA DEAD-like domain AL536_11820 PF03548 Outer membrane lipoprotein carrier protein LolA AL536_11825 PF16193 AAA C-terminal domain AL536_11825 PF12002 MgsA AAA+ ATPase C terminal AL536_11825 PF00004 ATPase family associated with various cellular activities (AAA) AL536_11830 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL536_11830 PF02403 Seryl-tRNA synthetase N-terminal domain AL536_11840 PF04324 BFD-like [2Fe-2S] binding domain AL536_11840 PF01568 Molydopterin dinucleotide binding domain AL536_11840 PF00384 Molybdopterin oxidoreductase AL536_11840 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL536_11845 PF10414 Sirohaem synthase dimerisation region AL536_11845 PF14824 Sirohaem biosynthesis protein central AL536_11845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL536_11850 PF02885 Glycosyl transferase family, helical bundle domain AL536_11850 PF00591 Glycosyl transferase family, a/b domain AL536_11855 PF03861 ANTAR domain AL536_11855 PF00072 Response regulator receiver domain AL536_11860 PF00005 ABC transporter AL536_11865 PF00528 Binding-protein-dependent transport system inner membrane component AL536_11870 PF00005 ABC transporter AL536_11875 PF04324 BFD-like [2Fe-2S] binding domain AL536_11875 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL536_11875 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL536_11875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_11875 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL536_11875 PF13806 Rieske-like [2Fe-2S] domain AL536_11885 PF00202 Aminotransferase class-III AL536_11890 PF04055 Radical SAM superfamily AL536_11890 PF06968 Biotin and Thiamin Synthesis associated domain AL536_11895 PF00155 Aminotransferase class I and II AL536_11900 PF08241 Methyltransferase domain AL536_11910 PF01435 Peptidase family M48 AL536_11955 PF08328 Adenylosuccinate lyase C-terminal AL536_11955 PF00206 Lyase AL536_11960 PF04356 Protein of unknown function (DUF489) AL536_11970 PF00294 pfkB family carbohydrate kinase AL536_11975 PF00816 H-NS histone family AL536_11980 PF03553 Na+/H+ antiporter family AL536_11985 PF02954 Bacterial regulatory protein, Fis family AL536_11985 PF00072 Response regulator receiver domain AL536_11985 PF00158 Sigma-54 interaction domain AL536_11990 PF01634 ATP phosphoribosyltransferase AL536_11990 PF08029 HisG, C-terminal domain AL536_11995 PF00815 Histidinol dehydrogenase AL536_12000 PF00155 Aminotransferase class I and II AL536_12005 PF08645 Polynucleotide kinase 3 phosphatase AL536_12005 PF00475 Imidazoleglycerol-phosphate dehydratase AL536_12010 PF00117 Glutamine amidotransferase class-I AL536_12015 PF00977 Histidine biosynthesis protein AL536_12020 PF00977 Histidine biosynthesis protein AL536_12025 PF01502 Phosphoribosyl-AMP cyclohydrolase AL536_12025 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL536_12030 PF00849 RNA pseudouridylate synthase AL536_12035 PF03971 Monomeric isocitrate dehydrogenase AL536_12040 PF00313 'Cold-shock' DNA-binding domain AL536_12045 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL536_12050 PF02861 Clp amino terminal domain, pathogenicity island component AL536_12050 PF10431 C-terminal, D2-small domain, of ClpB protein AL536_12050 PF07724 AAA domain (Cdc48 subfamily) AL536_12050 PF17871 AAA lid domain AL536_12050 PF00004 ATPase family associated with various cellular activities (AAA) AL536_12055 PF01176 Translation initiation factor 1A / IF-1 AL536_12060 PF04377 Arginine-tRNA-protein transferase, C terminus AL536_12060 PF04376 Arginine-tRNA-protein transferase, N terminus AL536_12065 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AL536_12075 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL536_12080 PF10692 Protein of unknown function (DUF2498) AL536_12085 PF01751 Toprim domain AL536_12085 PF01396 Topoisomerase DNA binding C4 zinc finger AL536_12085 PF08272 Topoisomerase I zinc-ribbon-like AL536_12085 PF01131 DNA topoisomerase AL536_12090 PF00072 Response regulator receiver domain AL536_12090 PF00990 Diguanylate cyclase, GGDEF domain AL536_12095 PF00483 Nucleotidyl transferase AL536_12100 PF08323 Starch synthase catalytic domain AL536_12100 PF00534 Glycosyl transferases group 1 AL536_12120 PF04994 TfoX C-terminal domain AL536_12120 PF04993 TfoX N-terminal domain AL536_12125 PF00356 Bacterial regulatory proteins, lacI family AL536_12130 PF02613 Nitrate reductase delta subunit AL536_12135 PF00486 Transcriptional regulatory protein, C terminal AL536_12135 PF00072 Response regulator receiver domain AL536_12140 PF02698 DUF218 domain AL536_12150 PF03882 MukF winged-helix domain AL536_12150 PF17192 MukF middle domain AL536_12150 PF17193 MukF C-terminal domain AL536_12155 PF04288 MukE-like family AL536_12160 PF04310 MukB N-terminal AL536_12160 PF16330 MukB hinge domain AL536_12165 PF18030 RimK PreATP-grasp domain AL536_12165 PF08443 RimK-like ATP-grasp domain AL536_12175 PF08443 RimK-like ATP-grasp domain AL536_12175 PF18030 RimK PreATP-grasp domain AL536_12180 PF08003 Protein of unknown function (DUF1698) AL536_12185 PF13649 Methyltransferase domain AL536_12195 PF01336 OB-fold nucleic acid binding domain AL536_12195 PF02938 GAD domain AL536_12195 PF00152 tRNA synthetases class II (D, K and N) AL536_12200 PF00265 Thymidine kinase AL536_12210 PF01370 NAD dependent epimerase/dehydratase family AL536_12215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_12215 PF03466 LysR substrate binding domain AL536_12230 PF01226 Formate/nitrite transporter AL536_12235 PF03649 Uncharacterised protein family (UPF0014) AL536_12240 PF06796 Periplasmic nitrate reductase protein NapE AL536_12245 PF03264 NapC/NirT cytochrome c family, N-terminal region AL536_12250 PF00384 Molybdopterin oxidoreductase AL536_12250 PF18364 Molybdopterin oxidoreductase N-terminal domain AL536_12250 PF01568 Molydopterin dinucleotide binding domain AL536_12270 PF01368 DHH family AL536_12270 PF02833 DHHA2 domain AL536_12285 PF00005 ABC transporter AL536_12290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL536_12290 PF00005 ABC transporter AL536_12295 PF00528 Binding-protein-dependent transport system inner membrane component AL536_12295 PF12911 N-terminal TM domain of oligopeptide transport permease C AL536_12300 PF00528 Binding-protein-dependent transport system inner membrane component AL536_12305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL536_12310 PF00158 Sigma-54 interaction domain AL536_12310 PF02954 Bacterial regulatory protein, Fis family AL536_12315 PF04012 PspA/IM30 family AL536_12320 PF06667 Phage shock protein B AL536_12330 PF00529 HlyD membrane-fusion protein of T1SS AL536_12330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL536_12335 PF13533 Biotin-lipoyl like AL536_12340 PF00873 AcrB/AcrD/AcrF family AL536_12345 PF13673 Acetyltransferase (GNAT) domain AL536_12345 PF03352 Methyladenine glycosylase AL536_12345 PF00117 Glutamine amidotransferase class-I AL536_12345 PF00958 GMP synthase C terminal domain AL536_12345 PF13302 Acetyltransferase (GNAT) domain AL536_12365 PF08534 Redoxin AL536_12375 PF01053 Cys/Met metabolism PLP-dependent enzyme AL536_12380 PF13091 PLD-like domain AL536_12380 PF13396 Phospholipase_D-nuclease N-terminal AL536_12385 PF00209 Sodium:neurotransmitter symporter family AL536_12390 PF00206 Lyase AL536_12390 PF10415 Fumarase C C-terminus AL536_12395 PF00873 AcrB/AcrD/AcrF family AL536_12405 PF00849 RNA pseudouridylate synthase AL536_12415 PF00701 Dihydrodipicolinate synthetase family AL536_12420 PF01066 CDP-alcohol phosphatidyltransferase AL536_12425 PF00005 ABC transporter AL536_12430 PF00528 Binding-protein-dependent transport system inner membrane component AL536_12435 PF13416 Bacterial extracellular solute-binding protein AL536_12445 PF06945 Protein of unknown function (DUF1289) AL536_12460 PF00005 ABC transporter AL536_12470 PF03222 Tryptophan/tyrosine permease family AL536_12485 PF00990 Diguanylate cyclase, GGDEF domain AL536_12485 PF17158 Membrane-associated sensor, integral membrane domain AL536_12490 PF01717 Cobalamin-independent synthase, Catalytic domain AL536_12500 PF00313 'Cold-shock' DNA-binding domain AL536_12510 PF02028 BCCT, betaine/carnitine/choline family transporter AL536_12515 PF03466 LysR substrate binding domain AL536_12515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_12520 PF00884 Sulfatase AL536_12525 PF04055 Radical SAM superfamily AL536_12525 PF13186 Iron-sulfur cluster-binding domain AL536_12530 PF17863 AAA lid domain AL536_12530 PF07726 ATPase family associated with various cellular activities (AAA) AL536_12565 PF01386 Ribosomal L25p family AL536_12570 PF00672 HAMP domain AL536_12570 PF00512 His Kinase A (phospho-acceptor) domain AL536_12570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_12575 PF00486 Transcriptional regulatory protein, C terminal AL536_12575 PF00072 Response regulator receiver domain AL536_12585 PF00271 Helicase conserved C-terminal domain AL536_12585 PF04851 Type III restriction enzyme, res subunit AL536_12590 PF01479 S4 domain AL536_12590 PF00849 RNA pseudouridylate synthase AL536_12595 PF07690 Major Facilitator Superfamily AL536_12605 PF13460 NAD(P)H-binding AL536_12605 PF11066 Protein of unknown function (DUF2867) AL536_12610 PF01554 MatE AL536_12615 PF00005 ABC transporter AL536_12630 PF06965 Na+/H+ antiporter 1 AL536_12635 PF05736 OprF membrane domain AL536_12635 PF00691 OmpA family AL536_12650 PF00202 Aminotransferase class-III AL536_12655 PF03435 Saccharopine dehydrogenase NADP binding domain AL536_12655 PF16653 Saccharopine dehydrogenase C-terminal domain AL536_12665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_12665 PF00672 HAMP domain AL536_12665 PF02743 Cache domain AL536_12675 PF03480 Bacterial extracellular solute-binding protein, family 7 AL536_12685 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL536_12690 PF01202 Shikimate kinase AL536_12695 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL536_12695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL536_12705 PF00994 Probable molybdopterin binding domain AL536_12715 PF00111 2Fe-2S iron-sulfur cluster binding domain AL536_12715 PF00175 Oxidoreductase NAD-binding domain AL536_12715 PF00970 Oxidoreductase FAD-binding domain AL536_12720 PF00268 Ribonucleotide reductase, small chain AL536_12725 PF02867 Ribonucleotide reductase, barrel domain AL536_12725 PF00317 Ribonucleotide reductase, all-alpha domain AL536_12725 PF03477 ATP cone domain AL536_12735 PF03989 DNA gyrase C-terminal domain, beta-propeller AL536_12735 PF00521 DNA gyrase/topoisomerase IV, subunit A AL536_12745 PF00925 GTP cyclohydrolase II AL536_12770 PF03734 L,D-transpeptidase catalytic domain AL536_12770 PF01471 Putative peptidoglycan binding domain AL536_12775 PF05951 Bacterial protein of unknown function (DUF882) AL536_12780 PF00753 Metallo-beta-lactamase superfamily AL536_12795 PF03480 Bacterial extracellular solute-binding protein, family 7 AL536_12805 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL536_12810 PF07730 Histidine kinase AL536_12810 PF17200 Single Cache domain 2 AL536_12815 PF00072 Response regulator receiver domain AL536_12815 PF00196 Bacterial regulatory proteins, luxR family AL536_12820 PF01047 MarR family AL536_12825 PF02028 BCCT, betaine/carnitine/choline family transporter AL536_12830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_12830 PF00672 HAMP domain AL536_12835 PF00929 Exonuclease AL536_12835 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL536_12835 PF02811 PHP domain AL536_12835 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL536_12835 PF14579 Helix-hairpin-helix motif AL536_12840 PF00571 CBS domain AL536_12850 PF00155 Aminotransferase class I and II AL536_12865 PF01336 OB-fold nucleic acid binding domain AL536_12865 PF00152 tRNA synthetases class II (D, K and N) AL536_12870 PF00672 HAMP domain AL536_12870 PF17200 Single Cache domain 2 AL536_12870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_12875 PF01242 6-pyruvoyl tetrahydropterin synthase AL536_12880 PF02321 Outer membrane efflux protein AL536_12885 PF02687 FtsX-like permease family AL536_12885 PF12704 MacB-like periplasmic core domain AL536_12885 PF00005 ABC transporter AL536_12890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL536_12895 PF03313 Serine dehydratase alpha chain AL536_12895 PF03315 Serine dehydratase beta chain AL536_12900 PF03222 Tryptophan/tyrosine permease family AL536_12905 PF00293 NUDIX domain AL536_12920 PF04715 Anthranilate synthase component I, N terminal region AL536_12920 PF00425 chorismate binding enzyme AL536_12935 PF04317 YcjX-like family, DUF463 AL536_12940 PF05128 Domain of unknown function (DUF697) AL536_12945 PF00158 Sigma-54 interaction domain AL536_12945 PF18024 Helix-turn-helix domain AL536_12950 PF13302 Acetyltransferase (GNAT) domain AL536_12965 PF00892 EamA-like transporter family AL536_12970 PF00939 Sodium:sulfate symporter transmembrane region AL536_12975 PF00512 His Kinase A (phospho-acceptor) domain AL536_12975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_12975 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL536_12980 PF00158 Sigma-54 interaction domain AL536_12980 PF00072 Response regulator receiver domain AL536_12980 PF02954 Bacterial regulatory protein, Fis family AL536_12985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_12985 PF03466 LysR substrate binding domain AL536_12990 PF03992 Antibiotic biosynthesis monooxygenase AL536_12995 PF00881 Nitroreductase family AL536_13000 PF04400 (Na+)-NQR maturation NqrM AL536_13010 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL536_13010 PF00703 Glycosyl hydrolases family 2 AL536_13010 PF16353 Domain of unknown function(DUF4981) AL536_13010 PF02929 Beta galactosidase small chain AL536_13010 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL536_13015 PF13407 Periplasmic binding protein domain AL536_13020 PF00005 ABC transporter AL536_13025 PF02653 Branched-chain amino acid transport system / permease component AL536_13035 PF01970 Tripartite tricarboxylate transporter TctA family AL536_13055 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL536_13055 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL536_13055 PF02805 Metal binding domain of Ada AL536_13055 PF12833 Helix-turn-helix domain AL536_13070 PF00285 Citrate synthase, C-terminal domain AL536_13075 PF00330 Aconitase family (aconitate hydratase) AL536_13075 PF00694 Aconitase C-terminal domain AL536_13080 PF04303 PrpF protein AL536_13085 PF13193 AMP-binding enzyme C-terminal domain AL536_13085 PF16177 Acetyl-coenzyme A synthetase N-terminus AL536_13085 PF00501 AMP-binding enzyme AL536_13095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL536_13095 PF00529 HlyD membrane-fusion protein of T1SS AL536_13100 PF07690 Major Facilitator Superfamily AL536_13115 PF01546 Peptidase family M20/M25/M40 AL536_13115 PF07687 Peptidase dimerisation domain AL536_13120 PF12792 CSS motif domain associated with EAL AL536_13120 PF00563 EAL domain AL536_13125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL536_13130 PF04209 homogentisate 1,2-dioxygenase AL536_13140 PF02798 Glutathione S-transferase, N-terminal domain AL536_13140 PF14497 Glutathione S-transferase, C-terminal domain AL536_13160 PF04074 YhcH/YjgK/YiaL AL536_13165 PF03009 Glycerophosphoryl diester phosphodiesterase family AL536_13170 PF00455 DeoR C terminal sensor domain AL536_13170 PF08220 DeoR-like helix-turn-helix domain AL536_13175 PF17912 MalK OB fold domain AL536_13175 PF00005 ABC transporter AL536_13180 PF00528 Binding-protein-dependent transport system inner membrane component AL536_13185 PF00528 Binding-protein-dependent transport system inner membrane component AL536_13190 PF13416 Bacterial extracellular solute-binding protein AL536_13200 PF00753 Metallo-beta-lactamase superfamily AL536_13205 PF08212 Lipocalin-like domain AL536_13215 PF01618 MotA/TolQ/ExbB proton channel family AL536_13220 PF01618 MotA/TolQ/ExbB proton channel family AL536_13225 PF02472 Biopolymer transport protein ExbD/TolR AL536_13230 PF03544 Gram-negative bacterial TonB protein C-terminal AL536_13245 PF01734 Patatin-like phospholipase AL536_13250 PF14743 DNA ligase OB-like domain AL536_13250 PF01068 ATP dependent DNA ligase domain AL536_13260 PF01554 MatE AL536_13265 PF00677 Lumazine binding domain AL536_13285 PF00877 NlpC/P60 family AL536_13290 PF02743 Cache domain AL536_13290 PF00672 HAMP domain AL536_13290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_13305 PF00480 ROK family AL536_13315 PF03454 MoeA C-terminal region (domain IV) AL536_13315 PF00994 Probable molybdopterin binding domain AL536_13315 PF03453 MoeA N-terminal region (domain I and II) AL536_13320 PF12804 MobA-like NTP transferase domain AL536_13325 PF08402 TOBE domain AL536_13325 PF00005 ABC transporter AL536_13330 PF00528 Binding-protein-dependent transport system inner membrane component AL536_13335 PF12849 PBP superfamily domain AL536_13340 PF00072 Response regulator receiver domain AL536_13340 PF02954 Bacterial regulatory protein, Fis family AL536_13340 PF00158 Sigma-54 interaction domain AL536_13345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_13345 PF00989 PAS fold AL536_13345 PF00512 His Kinase A (phospho-acceptor) domain AL536_13360 PF02634 FdhD/NarQ family AL536_13380 PF02613 Nitrate reductase delta subunit AL536_13390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL536_13390 PF01568 Molydopterin dinucleotide binding domain AL536_13390 PF00384 Molybdopterin oxidoreductase AL536_13390 PF12838 4Fe-4S dicluster domain AL536_13390 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL536_13395 PF13247 4Fe-4S dicluster domain AL536_13410 PF00909 Ammonium Transporter Family AL536_13415 PF02146 Sir2 family AL536_13420 PF13416 Bacterial extracellular solute-binding protein AL536_13425 PF13416 Bacterial extracellular solute-binding protein AL536_13430 PF00528 Binding-protein-dependent transport system inner membrane component AL536_13435 PF00528 Binding-protein-dependent transport system inner membrane component AL536_13440 PF08402 TOBE domain AL536_13440 PF00005 ABC transporter AL536_13460 PF01171 PP-loop family AL536_13465 PF00582 Universal stress protein family AL536_13470 PF13545 Crp-like helix-turn-helix domain AL536_13470 PF00027 Cyclic nucleotide-binding domain AL536_13485 PF00403 Heavy-metal-associated domain AL536_13495 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL536_13495 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL536_13510 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL536_13525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_13525 PF00072 Response regulator receiver domain AL536_13525 PF00512 His Kinase A (phospho-acceptor) domain AL536_13525 PF09308 LuxQ, periplasmic AL536_13620 PF06303 MatP N-terminal domain AL536_13620 PF17414 MatP C-terminal ribbon-helix-helix domain AL536_13625 PF05362 Lon protease (S16) C-terminal proteolytic domain AL536_13625 PF13654 AAA domain AL536_13630 PF07977 FabA-like domain AL536_13635 PF04957 Ribosome modulation factor AL536_13655 PF02926 THUMP domain AL536_13655 PF01170 Putative RNA methylase family UPF0020 AL536_13655 PF10672 S-adenosylmethionine-dependent methyltransferase AL536_13660 PF07126 Cell-division protein ZapC AL536_13665 PF01180 Dihydroorotate dehydrogenase AL536_13670 PF05088 Bacterial NAD-glutamate dehydrogenase AL536_13675 PF01433 Peptidase family M1 domain AL536_13675 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL536_13675 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL536_13690 PF11818 C-terminal domain of tail specific protease (DUF3340) AL536_13690 PF17804 Tail specific protease N-terminal domain AL536_13690 PF00595 PDZ domain AL536_13690 PF03572 Peptidase family S41 AL536_13700 PF13185 GAF domain AL536_13705 PF00005 ABC transporter AL536_13705 PF00664 ABC transporter transmembrane region AL536_13710 PF04403 Paraquat-inducible protein A AL536_13715 PF02470 MlaD protein AL536_13720 PF01189 16S rRNA methyltransferase RsmB/F AL536_13720 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AL536_13720 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AL536_13725 PF17783 CvfB-like winged helix domain AL536_13725 PF13509 S1 domain AL536_13740 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL536_13740 PF00391 PEP-utilising enzyme, mobile domain AL536_13740 PF02896 PEP-utilising enzyme, TIM barrel domain AL536_13745 PF00793 DAHP synthetase I family AL536_13750 PF04461 Protein of unknown function (DUF520) AL536_13755 PF01641 SelR domain AL536_13765 PF01235 Sodium:alanine symporter family AL536_13790 PF04717 Type VI secretion system, phage-baseplate injector AL536_13790 PF16671 Actin cross-linking domain AL536_13795 PF05638 Type VI secretion system effector, Hcp AL536_13800 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL536_13810 PF00270 DEAD/DEAH box helicase AL536_13810 PF00271 Helicase conserved C-terminal domain AL536_13810 PF04408 Helicase associated domain (HA2) AL536_13810 PF11898 Domain of unknown function (DUF3418) AL536_13810 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL536_13815 PF02525 Flavodoxin-like fold AL536_13825 PF03264 NapC/NirT cytochrome c family, N-terminal region AL536_13850 PF00990 Diguanylate cyclase, GGDEF domain AL536_13860 PF00012 Hsp70 protein AL536_13865 PF00012 Hsp70 protein AL536_13870 PF05230 MASE2 domain AL536_13870 PF00990 Diguanylate cyclase, GGDEF domain AL536_13880 PF13188 PAS domain AL536_13880 PF00563 EAL domain AL536_13880 PF00990 Diguanylate cyclase, GGDEF domain AL536_13880 PF03707 Bacterial signalling protein N terminal repeat AL536_13895 PF13417 Glutathione S-transferase, N-terminal domain AL536_13895 PF04399 Glutaredoxin 2, C terminal domain AL536_13905 PF07859 alpha/beta hydrolase fold AL536_13915 PF00072 Response regulator receiver domain AL536_13915 PF00990 Diguanylate cyclase, GGDEF domain AL536_13925 PF00384 Molybdopterin oxidoreductase AL536_13925 PF01568 Molydopterin dinucleotide binding domain AL536_13925 PF18364 Molybdopterin oxidoreductase N-terminal domain AL536_13930 PF03264 NapC/NirT cytochrome c family, N-terminal region AL536_13935 PF06508 Queuosine biosynthesis protein QueC AL536_13940 PF04055 Radical SAM superfamily AL536_13950 PF10414 Sirohaem synthase dimerisation region AL536_13950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL536_13950 PF14824 Sirohaem biosynthesis protein central AL536_13955 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL536_13960 PF00528 Binding-protein-dependent transport system inner membrane component AL536_13965 PF00528 Binding-protein-dependent transport system inner membrane component AL536_13970 PF00005 ABC transporter AL536_13975 PF01027 Inhibitor of apoptosis-promoting Bax1 AL536_13980 PF04358 DsrC like protein AL536_13985 PF00708 Acylphosphatase AL536_13990 PF10672 S-adenosylmethionine-dependent methyltransferase AL536_13990 PF17785 PUA-like domain AL536_13995 PF06433 Methylamine dehydrogenase heavy chain (MADH) AL536_14005 PF00578 AhpC/TSA family AL536_14010 PF02975 Methylamine dehydrogenase, L chain AL536_14035 PF00141 Peroxidase AL536_14040 PF00512 His Kinase A (phospho-acceptor) domain AL536_14040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_14040 PF00672 HAMP domain AL536_14045 PF00486 Transcriptional regulatory protein, C terminal AL536_14045 PF00072 Response regulator receiver domain AL536_14050 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL536_14050 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL536_14060 PF00924 Mechanosensitive ion channel AL536_14060 PF05552 Conserved TM helix AL536_14065 PF01699 Sodium/calcium exchanger protein AL536_14080 PF13426 PAS domain AL536_14080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_14080 PF08447 PAS fold AL536_14090 PF00313 'Cold-shock' DNA-binding domain AL536_14130 PF00990 Diguanylate cyclase, GGDEF domain AL536_14130 PF00072 Response regulator receiver domain AL536_14140 PF11852 Domain of unknown function (DUF3372) AL536_14140 PF03714 Bacterial pullanase-associated domain AL536_14140 PF18494 Pullulanase Ins domain AL536_14140 PF17967 Pullulanase N2 domain AL536_14140 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL536_14145 PF00072 Response regulator receiver domain AL536_14145 PF01584 CheW-like domain AL536_14155 PF00072 Response regulator receiver domain AL536_14155 PF12431 Transcriptional regulator AL536_14160 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL536_14160 PF17203 Single cache domain 3 AL536_14160 PF00989 PAS fold AL536_14160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_14175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL536_14195 PF04204 Homoserine O-succinyltransferase AL536_14210 PF05971 RNA methyltransferase AL536_14215 PF01863 Protein of unknown function DUF45 AL536_14225 PF03466 LysR substrate binding domain AL536_14225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_14275 PF00005 ABC transporter AL536_14280 PF01032 FecCD transport family AL536_14285 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL536_14295 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AL536_14300 PF02654 Cobalamin-5-phosphate synthase AL536_14305 PF02277 Phosphoribosyltransferase AL536_14310 PF01613 Flavin reductase like domain AL536_14315 PF13460 NAD(P)H-binding AL536_14330 PF08411 Exonuclease C-terminal AL536_14330 PF00929 Exonuclease AL536_14335 PF03788 LrgA family AL536_14340 PF04172 LrgB-like family AL536_14345 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AL536_14345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL536_14350 PF00563 EAL domain AL536_14350 PF08447 PAS fold AL536_14350 PF08448 PAS fold AL536_14350 PF00990 Diguanylate cyclase, GGDEF domain AL536_14370 PF02222 ATP-grasp domain AL536_14375 PF08447 PAS fold AL536_14375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_14375 PF13426 PAS domain AL536_14380 PF05724 Thiopurine S-methyltransferase (TPMT) AL536_14390 PF00216 Bacterial DNA-binding protein AL536_14395 PF03483 B3/4 domain AL536_14395 PF03484 tRNA synthetase B5 domain AL536_14395 PF03147 Ferredoxin-fold anticodon binding domain AL536_14395 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL536_14395 PF01588 Putative tRNA binding domain AL536_14400 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL536_14400 PF01409 tRNA synthetases class II core domain (F) AL536_14410 PF03466 LysR substrate binding domain AL536_14410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_14415 PF00990 Diguanylate cyclase, GGDEF domain AL536_14415 PF00072 Response regulator receiver domain AL536_14420 PF07995 Glucose / Sorbosone dehydrogenase AL536_14450 PF01066 CDP-alcohol phosphatidyltransferase AL536_14455 PF08459 UvrC Helix-hairpin-helix N-terminal AL536_14455 PF02151 UvrB/uvrC motif AL536_14455 PF01541 GIY-YIG catalytic domain AL536_14460 PF00196 Bacterial regulatory proteins, luxR family AL536_14460 PF00072 Response regulator receiver domain AL536_14465 PF03104 DNA polymerase family B, exonuclease domain AL536_14465 PF00136 DNA polymerase family B AL536_14470 PF13426 PAS domain AL536_14470 PF00563 EAL domain AL536_14470 PF00990 Diguanylate cyclase, GGDEF domain AL536_14480 PF08207 Elongation factor P (EF-P) KOW-like domain AL536_14480 PF09285 Elongation factor P, C-terminal AL536_14480 PF01132 Elongation factor P (EF-P) OB domain AL536_14485 PF04269 Protein of unknown function, DUF440 AL536_14495 PF00392 Bacterial regulatory proteins, gntR family AL536_14495 PF07702 UTRA domain AL536_14500 PF01979 Amidohydrolase family AL536_14505 PF00491 Arginase family AL536_14510 PF17392 Urocanase C-terminal domain AL536_14510 PF17391 Urocanase N-terminal domain AL536_14510 PF01175 Urocanase Rossmann-like domain AL536_14515 PF00221 Aromatic amino acid lyase AL536_14530 PF04191 Phospholipid methyltransferase AL536_14535 PF13183 4Fe-4S dicluster domain AL536_14535 PF02913 FAD linked oxidases, C-terminal domain AL536_14535 PF01565 FAD binding domain AL536_14550 PF13488 Glycine zipper AL536_14550 PF00691 OmpA family AL536_14570 PF01259 SAICAR synthetase AL536_14575 PF00202 Aminotransferase class-III AL536_14580 PF00171 Aldehyde dehydrogenase family AL536_14585 PF04371 Porphyromonas-type peptidyl-arginine deiminase AL536_14590 PF00795 Carbon-nitrogen hydrolase AL536_14595 PF01266 FAD dependent oxidoreductase AL536_14600 PF00171 Aldehyde dehydrogenase family AL536_14605 PF01381 Helix-turn-helix AL536_14605 PF07883 Cupin domain AL536_14610 PF07722 Peptidase C26 AL536_14615 PF00120 Glutamine synthetase, catalytic domain AL536_14630 PF11898 Domain of unknown function (DUF3418) AL536_14630 PF04408 Helicase associated domain (HA2) AL536_14630 PF00271 Helicase conserved C-terminal domain AL536_14630 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL536_14630 PF00270 DEAD/DEAH box helicase AL536_14635 PF00390 Malic enzyme, N-terminal domain AL536_14635 PF03949 Malic enzyme, NAD binding domain AL536_14655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_14655 PF03466 LysR substrate binding domain AL536_14675 PF13344 Haloacid dehalogenase-like hydrolase AL536_14675 PF00293 NUDIX domain AL536_14685 PF00376 MerR family regulatory protein AL536_14685 PF09278 MerR, DNA binding AL536_14695 PF02698 DUF218 domain AL536_14705 PF09339 IclR helix-turn-helix domain AL536_14705 PF01614 Bacterial transcriptional regulator AL536_14710 PF09339 IclR helix-turn-helix domain AL536_14710 PF01614 Bacterial transcriptional regulator AL536_14715 PF00171 Aldehyde dehydrogenase family AL536_14720 PF00465 Iron-containing alcohol dehydrogenase AL536_14725 PF00266 Aminotransferase class-V AL536_14745 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_14750 PF00664 ABC transporter transmembrane region AL536_14750 PF00005 ABC transporter AL536_14755 PF00005 ABC transporter AL536_14755 PF00664 ABC transporter transmembrane region AL536_14785 PF01479 S4 domain AL536_14785 PF00849 RNA pseudouridylate synthase AL536_14790 PF01300 Telomere recombination AL536_14795 PF02811 PHP domain AL536_14800 PF04715 Anthranilate synthase component I, N terminal region AL536_14800 PF00425 chorismate binding enzyme AL536_14805 PF00117 Glutamine amidotransferase class-I AL536_14810 PF02885 Glycosyl transferase family, helical bundle domain AL536_14810 PF00591 Glycosyl transferase family, a/b domain AL536_14815 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL536_14815 PF00218 Indole-3-glycerol phosphate synthase AL536_14820 PF00291 Pyridoxal-phosphate dependent enzyme AL536_14830 PF00375 Sodium:dicarboxylate symporter family AL536_14840 PF04279 Intracellular septation protein A AL536_14845 PF03061 Thioesterase superfamily AL536_14850 PF03795 YCII-related domain AL536_14860 PF01717 Cobalamin-independent synthase, Catalytic domain AL536_14860 PF08267 Cobalamin-independent synthase, N-terminal domain AL536_14865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_14865 PF03466 LysR substrate binding domain AL536_14880 PF05193 Peptidase M16 inactive domain AL536_14880 PF00675 Insulinase (Peptidase family M16) AL536_14900 PF02798 Glutathione S-transferase, N-terminal domain AL536_14900 PF00043 Glutathione S-transferase, C-terminal domain AL536_14905 PF00043 Glutathione S-transferase, C-terminal domain AL536_14905 PF13417 Glutathione S-transferase, N-terminal domain AL536_14910 PF00563 EAL domain AL536_14910 PF00196 Bacterial regulatory proteins, luxR family AL536_14915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_14915 PF00672 HAMP domain AL536_14915 PF12729 Four helix bundle sensory module for signal transduction AL536_14930 PF01177 Asp/Glu/Hydantoin racemase AL536_14935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL536_14940 PF00672 HAMP domain AL536_14940 PF00989 PAS fold AL536_14940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_14940 PF00512 His Kinase A (phospho-acceptor) domain AL536_14945 PF00072 Response regulator receiver domain AL536_14945 PF00486 Transcriptional regulatory protein, C terminal AL536_14960 PF03358 NADPH-dependent FMN reductase AL536_14965 PF00005 ABC transporter AL536_14965 PF12848 ABC transporter AL536_14970 PF11842 Domain of unknown function (DUF3362) AL536_14970 PF04055 Radical SAM superfamily AL536_14970 PF08497 Radical SAM N-terminal AL536_14975 PF00266 Aminotransferase class-V AL536_14985 PF00512 His Kinase A (phospho-acceptor) domain AL536_14985 PF00989 PAS fold AL536_14985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_15000 PF04993 TfoX N-terminal domain AL536_15000 PF04994 TfoX C-terminal domain AL536_15010 PF03956 Lysine exporter LysO AL536_15020 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL536_15025 PF01418 Helix-turn-helix domain, rpiR family AL536_15025 PF01380 SIS domain AL536_15030 PF00465 Iron-containing alcohol dehydrogenase AL536_15035 PF00462 Glutaredoxin AL536_15040 PF06826 Predicted Permease Membrane Region AL536_15040 PF02080 TrkA-C domain AL536_15045 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL536_15045 PF07055 Enoyl reductase FAD binding domain AL536_15045 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL536_15050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL536_15050 PF02770 Acyl-CoA dehydrogenase, middle domain AL536_15050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL536_15050 PF09317 Domain of unknown function (DUF1974) AL536_15055 PF16295 Tetracyclin repressor-like, C-terminal domain AL536_15055 PF00440 Bacterial regulatory proteins, tetR family AL536_15070 PF00171 Aldehyde dehydrogenase family AL536_15080 PF06610 L-alanine exporter AL536_15085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_15085 PF00072 Response regulator receiver domain AL536_15085 PF09308 LuxQ, periplasmic AL536_15085 PF00512 His Kinase A (phospho-acceptor) domain AL536_15095 PF02445 Quinolinate synthetase A protein AL536_15100 PF16331 TolA binding protein trimerisation AL536_15100 PF13174 Tetratricopeptide repeat AL536_15105 PF00691 OmpA family AL536_15120 PF02472 Biopolymer transport protein ExbD/TolR AL536_15125 PF01618 MotA/TolQ/ExbB proton channel family AL536_15130 PF03061 Thioesterase superfamily AL536_15140 PF08173 Membrane bound YbgT-like protein AL536_15145 PF02322 Cytochrome bd terminal oxidase subunit II AL536_15150 PF01654 Cytochrome bd terminal oxidase subunit I AL536_15155 PF17864 RuvB AAA lid domain AL536_15155 PF05491 RuvB C-terminal winged helix domain AL536_15155 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL536_15160 PF01330 RuvA N terminal domain AL536_15160 PF07499 RuvA, C-terminal domain AL536_15165 PF02075 Crossover junction endodeoxyribonuclease RuvC AL536_15170 PF01406 tRNA synthetases class I (C) catalytic domain AL536_15170 PF09190 DALR domain AL536_15175 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL536_15180 PF00149 Calcineurin-like phosphoesterase AL536_15185 PF08668 HDOD domain AL536_15185 PF00563 EAL domain AL536_15190 PF02810 SEC-C motif AL536_15195 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL536_15200 PF13609 Gram-negative porin AL536_15205 PF13307 Helicase C-terminal domain AL536_15205 PF06733 DEAD_2 AL536_15210 PF07445 Primosomal replication protein priC AL536_15215 PF10689 Protein of unknown function (DUF2496) AL536_15220 PF00672 HAMP domain AL536_15220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_15220 PF02743 Cache domain AL536_15225 PF03372 Endonuclease/Exonuclease/phosphatase family AL536_15230 PF00528 Binding-protein-dependent transport system inner membrane component AL536_15235 PF00528 Binding-protein-dependent transport system inner membrane component AL536_15240 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL536_15245 PF00005 ABC transporter AL536_15255 PF02901 Pyruvate formate lyase-like AL536_15255 PF01228 Glycine radical AL536_15265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_15265 PF00672 HAMP domain AL536_15270 PF04055 Radical SAM superfamily AL536_15290 PF06798 PrkA serine protein kinase C-terminal domain AL536_15290 PF08298 PrkA AAA domain AL536_15295 PF04285 Protein of unknown function (DUF444) AL536_15300 PF04293 SpoVR like protein AL536_15305 PF02348 Cytidylyltransferase AL536_15310 PF03966 Trm112p-like protein AL536_15315 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AL536_15320 PF00664 ABC transporter transmembrane region AL536_15320 PF00005 ABC transporter AL536_15325 PF03772 Competence protein AL536_15325 PF13567 Domain of unknown function (DUF4131) AL536_15325 PF00753 Metallo-beta-lactamase superfamily AL536_15335 PF12704 MacB-like periplasmic core domain AL536_15335 PF02687 FtsX-like permease family AL536_15340 PF00005 ABC transporter AL536_15345 PF02687 FtsX-like permease family AL536_15345 PF12704 MacB-like periplasmic core domain AL536_15355 PF02559 CarD-like/TRCF domain AL536_15355 PF00270 DEAD/DEAH box helicase AL536_15355 PF03461 TRCF domain AL536_15355 PF00271 Helicase conserved C-terminal domain AL536_15355 PF17757 UvrB interaction domain AL536_15370 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_15380 PF01636 Phosphotransferase enzyme family AL536_15385 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL536_15385 PF13036 Peptidoglycan-synthase activator LpoB AL536_15400 PF01230 HIT domain AL536_15405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_15405 PF00672 HAMP domain AL536_15415 PF00392 Bacterial regulatory proteins, gntR family AL536_15415 PF07840 FadR C-terminal domain AL536_15420 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AL536_15425 PF02600 Disulfide bond formation protein DsbB AL536_15430 PF17854 FtsK alpha domain AL536_15430 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL536_15430 PF09397 Ftsk gamma domain AL536_15430 PF01580 FtsK/SpoIIIE family AL536_15435 PF01037 Lrp/AsnC ligand binding domain AL536_15440 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL536_15440 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL536_15450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_15450 PF03466 LysR substrate binding domain AL536_15460 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AL536_15470 PF18073 Rubredoxin metal binding domain AL536_15475 PF06305 Lipopolysaccharide assembly protein A domain AL536_15485 PF00575 S1 RNA binding domain AL536_15490 PF02224 Cytidylate kinase AL536_15500 PF13145 PPIC-type PPIASE domain AL536_15505 PF00216 Bacterial DNA-binding protein AL536_15510 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL536_15510 PF05362 Lon protease (S16) C-terminal proteolytic domain AL536_15510 PF00004 ATPase family associated with various cellular activities (AAA) AL536_15515 PF06689 ClpX C4-type zinc finger AL536_15515 PF07724 AAA domain (Cdc48 subfamily) AL536_15515 PF10431 C-terminal, D2-small domain, of ClpB protein AL536_15520 PF00574 Clp protease AL536_15525 PF05697 Bacterial trigger factor protein (TF) AL536_15525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL536_15525 PF05698 Bacterial trigger factor protein (TF) C-terminus AL536_15530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_15530 PF00512 His Kinase A (phospho-acceptor) domain AL536_15535 PF00158 Sigma-54 interaction domain AL536_15535 PF02954 Bacterial regulatory protein, Fis family AL536_15535 PF00072 Response regulator receiver domain AL536_15540 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL536_15545 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL536_15550 PF03480 Bacterial extracellular solute-binding protein, family 7 AL536_15555 PF04151 Bacterial pre-peptidase C-terminal domain AL536_15555 PF05922 Peptidase inhibitor I9 AL536_15555 PF00082 Subtilase family AL536_15560 PF01547 Bacterial extracellular solute-binding protein AL536_15565 PF00672 HAMP domain AL536_15565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_15565 PF00512 His Kinase A (phospho-acceptor) domain AL536_15570 PF00486 Transcriptional regulatory protein, C terminal AL536_15570 PF00072 Response regulator receiver domain AL536_15575 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL536_15580 PF03315 Serine dehydratase beta chain AL536_15580 PF03313 Serine dehydratase alpha chain AL536_15590 PF00795 Carbon-nitrogen hydrolase AL536_15590 PF00583 Acetyltransferase (GNAT) family AL536_15600 PF00563 EAL domain AL536_15600 PF00498 FHA domain AL536_15600 PF00990 Diguanylate cyclase, GGDEF domain AL536_15620 PF00970 Oxidoreductase FAD-binding domain AL536_15620 PF00175 Oxidoreductase NAD-binding domain AL536_15645 PF00072 Response regulator receiver domain AL536_15645 PF00196 Bacterial regulatory proteins, luxR family AL536_15650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_15650 PF07730 Histidine kinase AL536_15650 PF05231 MASE1 AL536_15655 PF07690 Major Facilitator Superfamily AL536_15665 PF00528 Binding-protein-dependent transport system inner membrane component AL536_15670 PF00005 ABC transporter AL536_15670 PF08402 TOBE domain AL536_15680 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL536_15680 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL536_15685 PF07670 Nucleoside recognition AL536_15685 PF07662 Na+ dependent nucleoside transporter C-terminus AL536_15685 PF01773 Na+ dependent nucleoside transporter N-terminus AL536_15690 PF03466 LysR substrate binding domain AL536_15690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_15695 PF13406 Transglycosylase SLT domain AL536_15700 PF05166 YcgL domain AL536_15705 PF03775 Septum formation inhibitor MinC, C-terminal domain AL536_15705 PF05209 Septum formation inhibitor MinC, N-terminal domain AL536_15710 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL536_15715 PF03776 Septum formation topological specificity factor MinE AL536_15725 PF00570 HRDC domain AL536_15725 PF01612 3'-5' exonuclease AL536_15730 PF00501 AMP-binding enzyme AL536_15730 PF13193 AMP-binding enzyme C-terminal domain AL536_15750 PF00814 Glycoprotease family AL536_15755 PF04851 Type III restriction enzyme, res subunit AL536_15755 PF13307 Helicase C-terminal domain AL536_15765 PF01842 ACT domain AL536_15765 PF00551 Formyl transferase AL536_15770 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL536_15770 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_15775 PF01343 Peptidase family S49 AL536_15780 PF00710 Asparaginase, N-terminal AL536_15780 PF17763 Glutaminase/Asparaginase C-terminal domain AL536_15785 PF07023 Protein of unknown function (DUF1315) AL536_15795 PF01641 SelR domain AL536_15800 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL536_15800 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL536_15805 PF01263 Aldose 1-epimerase AL536_15810 PF13847 Methyltransferase domain AL536_15830 PF03692 Putative zinc- or iron-chelating domain AL536_15835 PF00230 Major intrinsic protein AL536_15840 PF13662 Toprim domain AL536_15840 PF02132 RecR protein AL536_15845 PF02575 YbaB/EbfC DNA-binding family AL536_15850 PF12170 DNA polymerase III tau subunit V interacting with alpha AL536_15850 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AL536_15850 PF12169 DNA polymerase III subunits gamma and tau domain III AL536_15855 PF00156 Phosphoribosyl transferase domain AL536_15860 PF04304 Protein of unknown function (DUF454) AL536_15865 PF00072 Response regulator receiver domain AL536_15870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_15870 PF03466 LysR substrate binding domain AL536_15875 PF00881 Nitroreductase family AL536_15880 PF00378 Enoyl-CoA hydratase/isomerase AL536_15880 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL536_15880 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL536_15885 PF02803 Thiolase, C-terminal domain AL536_15885 PF00108 Thiolase, N-terminal domain AL536_15890 PF04542 Sigma-70 region 2 AL536_15890 PF08281 Sigma-70, region 4 AL536_15900 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL536_15905 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL536_15910 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL536_15920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_15920 PF13426 PAS domain AL536_15920 PF08447 PAS fold AL536_15925 PF12557 Cob(I)alamin adenosyltransferase N terminal AL536_15925 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AL536_15930 PF05170 AsmA family AL536_15935 PF00485 Phosphoribulokinase / Uridine kinase family AL536_15940 PF10609 NUBPL iron-transfer P-loop NTPase AL536_15945 PF01588 Putative tRNA binding domain AL536_15945 PF09334 tRNA synthetases class I (M) AL536_15955 PF01048 Phosphorylase superfamily AL536_15960 PF00403 Heavy-metal-associated domain AL536_15965 PF00571 CBS domain AL536_15965 PF00478 IMP dehydrogenase / GMP reductase domain AL536_15970 PF08448 PAS fold AL536_15970 PF00990 Diguanylate cyclase, GGDEF domain AL536_15975 PF02391 MoaE protein AL536_15980 PF02597 ThiS family AL536_15985 PF01967 MoaC family AL536_15990 PF00994 Probable molybdopterin binding domain AL536_15995 PF04055 Radical SAM superfamily AL536_15995 PF06463 Molybdenum Cofactor Synthesis C AL536_16000 PF01933 Uncharacterised protein family UPF0052 AL536_16005 PF01627 Hpt domain AL536_16010 PF00158 Sigma-54 interaction domain AL536_16010 PF00072 Response regulator receiver domain AL536_16010 PF02954 Bacterial regulatory protein, Fis family AL536_16015 PF17757 UvrB interaction domain AL536_16015 PF12344 Ultra-violet resistance protein B AL536_16015 PF02151 UvrB/uvrC motif AL536_16015 PF04851 Type III restriction enzyme, res subunit AL536_16015 PF00271 Helicase conserved C-terminal domain AL536_16025 PF00589 Phage integrase family AL536_16025 PF13356 Arm DNA-binding domain AL536_16045 PF00360 Phytochrome region AL536_16045 PF00990 Diguanylate cyclase, GGDEF domain AL536_16045 PF01590 GAF domain AL536_16045 PF00563 EAL domain AL536_16070 PF17874 MalT-like TPR region AL536_16070 PF00196 Bacterial regulatory proteins, luxR family AL536_16095 PF00128 Alpha amylase, catalytic domain AL536_16095 PF02806 Alpha amylase, C-terminal all-beta domain AL536_16110 PF02508 Rnf-Nqr subunit, membrane protein AL536_16115 PF04060 Putative Fe-S cluster AL536_16120 PF10531 SLBB domain AL536_16120 PF13375 RnfC Barrel sandwich hybrid domain AL536_16120 PF12838 4Fe-4S dicluster domain AL536_16120 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AL536_16125 PF03116 NQR2, RnfD, RnfE family AL536_16130 PF04205 FMN-binding domain AL536_16135 PF02508 Rnf-Nqr subunit, membrane protein AL536_16140 PF00730 HhH-GPD superfamily base excision DNA repair protein AL536_16140 PF10576 Iron-sulfur binding domain of endonuclease III AL536_16140 PF00633 Helix-hairpin-helix motif AL536_16145 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL536_16150 PF10952 Protein of unknown function (DUF2753) AL536_16155 PF18393 MotY N-terminal domain AL536_16155 PF00691 OmpA family AL536_16160 PF00929 Exonuclease AL536_16165 PF03553 Na+/H+ antiporter family AL536_16165 PF13726 Na+-H+ antiporter family AL536_16170 PF00156 Phosphoribosyl transferase domain AL536_16175 PF02674 Colicin V production protein AL536_16180 PF05036 Sporulation related domain AL536_16185 PF02875 Mur ligase family, glutamate ligase domain AL536_16185 PF08245 Mur ligase middle domain AL536_16190 PF17848 Acetyl-coA carboxylase zinc finger domain AL536_16190 PF01039 Carboxyl transferase domain AL536_16195 PF01416 tRNA pseudouridine synthase AL536_16205 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL536_16205 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL536_16210 PF02378 Phosphotransferase system, EIIC AL536_16210 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL536_16210 PF00367 phosphotransferase system, EIIB AL536_16215 PF01979 Amidohydrolase family AL536_16220 PF01047 MarR family AL536_16220 PF00480 ROK family AL536_16225 PF00999 Sodium/hydrogen exchanger family AL536_16225 PF02254 TrkA-N domain AL536_16230 PF00733 Asparagine synthase AL536_16230 PF13537 Glutamine amidotransferase domain AL536_16235 PF02357 Transcription termination factor nusG AL536_16240 PF00854 POT family AL536_16245 PF00762 Ferrochelatase AL536_16250 PF05191 Adenylate kinase, active site lid AL536_16255 PF00183 Hsp90 protein AL536_16255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_16260 PF00486 Transcriptional regulatory protein, C terminal AL536_16265 PF17323 Trans-membrane regulatory protein ToxS AL536_16275 PF12850 Calcineurin-like phosphoesterase superfamily domain AL536_16290 PF07556 Protein of unknown function (DUF1538) AL536_16295 PF07556 Protein of unknown function (DUF1538) AL536_16300 PF08338 Domain of unknown function (DUF1731) AL536_16300 PF01370 NAD dependent epimerase/dehydratase family AL536_16305 PF00106 short chain dehydrogenase AL536_16310 PF00085 Thioredoxin AL536_16315 PF01145 SPFH domain / Band 7 family AL536_16315 PF16200 C-terminal region of band_7 AL536_16325 PF13411 MerR HTH family regulatory protein AL536_16335 PF13609 Gram-negative porin AL536_16340 PF00533 BRCA1 C Terminus (BRCT) domain AL536_16340 PF01653 NAD-dependent DNA ligase adenylation domain AL536_16340 PF03120 NAD-dependent DNA ligase OB-fold domain AL536_16340 PF12826 Helix-hairpin-helix motif AL536_16340 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AL536_16345 PF04354 ZipA, C-terminal FtsZ-binding domain AL536_16355 PF00291 Pyridoxal-phosphate dependent enzyme AL536_16360 PF00381 PTS HPr component phosphorylation site AL536_16365 PF05524 PEP-utilising enzyme, N-terminal AL536_16365 PF00391 PEP-utilising enzyme, mobile domain AL536_16365 PF02896 PEP-utilising enzyme, TIM barrel domain AL536_16370 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL536_16375 PF01494 FAD binding domain AL536_16380 PF01938 TRAM domain AL536_16380 PF00919 Uncharacterized protein family UPF0004 AL536_16380 PF04055 Radical SAM superfamily AL536_16385 PF02562 PhoH-like protein AL536_16390 PF02130 Uncharacterized protein family UPF0054 AL536_16395 PF03471 Transporter associated domain AL536_16395 PF00571 CBS domain AL536_16400 PF00795 Carbon-nitrogen hydrolase AL536_16405 PF07295 Zinc-ribbon containing domain AL536_16410 PF08264 Anticodon-binding domain of tRNA AL536_16410 PF00133 tRNA synthetases class I (I, L, M and V) AL536_16410 PF13603 Leucyl-tRNA synthetase, Domain 2 AL536_16415 PF04390 Lipopolysaccharide-assembly AL536_16420 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AL536_16420 PF06144 DNA polymerase III, delta subunit AL536_16430 PF02590 Predicted SPOUT methyltransferase AL536_16435 PF03717 Penicillin-binding Protein dimerisation domain AL536_16435 PF00905 Penicillin binding protein transpeptidase domain AL536_16440 PF01098 Cell cycle protein AL536_16445 PF03330 Lytic transglycolase AL536_16445 PF05036 Sporulation related domain AL536_16450 PF07943 Penicillin-binding protein 5, C-terminal domain AL536_16450 PF00768 D-alanyl-D-alanine carboxypeptidase AL536_16455 PF04359 Protein of unknown function (DUF493) AL536_16460 PF03099 Biotin/lipoate A/B protein ligase family AL536_16465 PF04055 Radical SAM superfamily AL536_16465 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL536_16475 PF00464 Serine hydroxymethyltransferase AL536_16485 PF00873 AcrB/AcrD/AcrF family AL536_16490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL536_16515 PF16657 Maltogenic Amylase, C-terminal domain AL536_16515 PF00128 Alpha amylase, catalytic domain AL536_16520 PF02378 Phosphotransferase system, EIIC AL536_16520 PF00367 phosphotransferase system, EIIB AL536_16525 PF00356 Bacterial regulatory proteins, lacI family AL536_16540 PF00005 ABC transporter AL536_16540 PF09383 NIL domain AL536_16545 PF00528 Binding-protein-dependent transport system inner membrane component AL536_16550 PF03180 NLPA lipoprotein AL536_16555 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AL536_16560 PF07348 Syd protein (SUKH-2) AL536_16565 PF14489 QueF-like protein AL536_16565 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL536_16575 PF00990 Diguanylate cyclase, GGDEF domain AL536_16575 PF00072 Response regulator receiver domain AL536_16580 PF03641 Possible lysine decarboxylase AL536_16580 PF11892 Domain of unknown function (DUF3412) AL536_16580 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AL536_16585 PF01367 5'-3' exonuclease, C-terminal SAM fold AL536_16585 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL536_16590 PF18125 RlmM ferredoxin-like domain AL536_16590 PF01728 FtsJ-like methyltransferase AL536_16595 PF04241 Protein of unknown function (DUF423) AL536_16605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_16605 PF03466 LysR substrate binding domain AL536_16610 PF02926 THUMP domain AL536_16610 PF02568 Thiamine biosynthesis protein (ThiI) AL536_16615 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL536_16615 PF00691 OmpA family AL536_16620 PF01618 MotA/TolQ/ExbB proton channel family AL536_16625 PF02609 Exonuclease VII small subunit AL536_16630 PF00348 Polyprenyl synthetase AL536_16635 PF02779 Transketolase, pyrimidine binding domain AL536_16635 PF02780 Transketolase, C-terminal domain AL536_16635 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL536_16640 PF00849 RNA pseudouridylate synthase AL536_16645 PF04287 tRNA pseudouridine synthase C AL536_16670 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AL536_16675 PF03806 AbgT putative transporter family AL536_16680 PF01197 Ribosomal protein L31 AL536_16685 PF01980 tRNA-methyltransferase O AL536_16685 PF18389 TrmO C-terminal domain AL536_16690 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL536_16690 PF04073 Aminoacyl-tRNA editing domain AL536_16690 PF03129 Anticodon binding domain AL536_16700 PF06786 Uncharacterised protein family (UPF0253) AL536_16710 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL536_16710 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL536_16710 PF02769 AIR synthase related protein, C-terminal domain AL536_16715 PF01464 Transglycosylase SLT domain AL536_16715 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL536_16720 PF14437 MafB19-like deaminase AL536_16725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_16725 PF03466 LysR substrate binding domain AL536_16730 PF08240 Alcohol dehydrogenase GroES-like domain AL536_16730 PF00107 Zinc-binding dehydrogenase AL536_16735 PF00756 Putative esterase AL536_16740 PF03806 AbgT putative transporter family AL536_16765 PF07963 Prokaryotic N-terminal methylation motif AL536_16770 PF01556 DnaJ C terminal domain AL536_16770 PF00226 DnaJ domain AL536_16770 PF00684 DnaJ central domain AL536_16775 PF00012 Hsp70 protein AL536_16780 PF00375 Sodium:dicarboxylate symporter family AL536_16785 PF01025 GrpE AL536_16790 PF01513 ATP-NAD kinase AL536_16795 PF02463 RecF/RecN/SMC N terminal domain AL536_16800 PF04355 SmpA / OmlA family AL536_16805 PF03658 RnfH family Ubiquitin AL536_16810 PF03364 Polyketide cyclase / dehydrase and lipid transport AL536_16815 PF01668 SmpB protein AL536_16825 PF00589 Phage integrase family AL536_16825 PF13356 Arm DNA-binding domain AL536_16830 PF00270 DEAD/DEAH box helicase AL536_16830 PF08148 DSHCT (NUC185) domain AL536_16830 PF00271 Helicase conserved C-terminal domain AL536_16840 PF18766 SWI2/SNF2 ATPase AL536_16840 PF11867 Domain of unknown function (DUF3387) AL536_16840 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL536_16850 PF02384 N-6 DNA Methylase AL536_16850 PF12161 HsdM N-terminal domain AL536_16860 PF02384 N-6 DNA Methylase AL536_16880 PF04002 RadC-like JAB domain AL536_16910 PF01926 50S ribosome-binding GTPase AL536_16910 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL536_16920 PF00075 RNase H AL536_16960 PF16671 Actin cross-linking domain AL536_16960 PF04717 Type VI secretion system, phage-baseplate injector AL536_16965 PF05638 Type VI secretion system effector, Hcp AL536_16985 PF07728 AAA domain (dynein-related subfamily) AL536_16985 PF12102 Domain of unknown function (DUF3578) AL536_16990 PF13087 AAA domain AL536_16990 PF13091 PLD-like domain AL536_17010 PF03466 LysR substrate binding domain AL536_17010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_17015 PF01266 FAD dependent oxidoreductase AL536_17020 PF01235 Sodium:alanine symporter family AL536_17025 PF03466 LysR substrate binding domain AL536_17025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_17030 PF07687 Peptidase dimerisation domain AL536_17030 PF01546 Peptidase family M20/M25/M40 AL536_17035 PF07690 Major Facilitator Superfamily AL536_17040 PF01758 Sodium Bile acid symporter family AL536_17045 PF01184 GPR1/FUN34/yaaH family AL536_17050 PF06483 Chitinase C AL536_17050 PF00704 Glycosyl hydrolases family 18 AL536_17055 PF02540 NAD synthase AL536_17055 PF00958 GMP synthase C terminal domain AL536_17055 PF00117 Glutamine amidotransferase class-I AL536_17060 PF00571 CBS domain AL536_17060 PF00478 IMP dehydrogenase / GMP reductase domain AL536_17065 PF02601 Exonuclease VII, large subunit AL536_17065 PF13742 OB-fold nucleic acid binding domain AL536_17080 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL536_17080 PF01926 50S ribosome-binding GTPase AL536_17085 PF13360 PQQ-like domain AL536_17090 PF09976 Tetratricopeptide repeat-like domain AL536_17095 PF13393 Histidyl-tRNA synthetase AL536_17095 PF03129 Anticodon binding domain AL536_17100 PF04551 GcpE protein AL536_17105 PF13464 Domain of unknown function (DUF4115) AL536_17110 PF04055 Radical SAM superfamily AL536_17115 PF00334 Nucleoside diphosphate kinase AL536_17120 PF12404 Peptidase AL536_17120 PF00883 Cytosol aminopeptidase family, catalytic domain AL536_17125 PF04384 Iron-sulphur cluster assembly AL536_17130 PF00111 2Fe-2S iron-sulfur cluster binding domain AL536_17135 PF00012 Hsp70 protein AL536_17140 PF07743 HSCB C-terminal oligomerisation domain AL536_17140 PF00226 DnaJ domain AL536_17145 PF01521 Iron-sulphur cluster biosynthesis AL536_17150 PF01592 NifU-like N terminal domain AL536_17155 PF00266 Aminotransferase class-V AL536_17160 PF02082 Transcriptional regulator AL536_17165 PF00588 SpoU rRNA Methylase family AL536_17170 PF00459 Inositol monophosphatase family AL536_17175 PF00857 Isochorismatase family AL536_17180 PF07549 SecD/SecF GG Motif AL536_17180 PF02355 Protein export membrane protein AL536_17185 PF07549 SecD/SecF GG Motif AL536_17185 PF13721 SecD export protein N-terminal TM region AL536_17185 PF02355 Protein export membrane protein AL536_17190 PF02699 Preprotein translocase subunit AL536_17195 PF01702 Queuine tRNA-ribosyltransferase AL536_17200 PF02547 Queuosine biosynthesis protein AL536_17205 PF00571 CBS domain AL536_17210 PF00463 Isocitrate lyase family AL536_17215 PF01274 Malate synthase AL536_17220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_17220 PF03466 LysR substrate binding domain AL536_17225 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL536_17225 PF00578 AhpC/TSA family AL536_17230 PF03932 CutC family AL536_17235 PF03976 Polyphosphate kinase 2 (PPK2) AL536_17240 PF01895 PhoU domain AL536_17245 PF00005 ABC transporter AL536_17250 PF00528 Binding-protein-dependent transport system inner membrane component AL536_17255 PF00528 Binding-protein-dependent transport system inner membrane component AL536_17260 PF02503 Polyphosphate kinase middle domain AL536_17260 PF13090 Polyphosphate kinase C-terminal domain 2 AL536_17260 PF17941 Polyphosphate kinase C-terminal domain 1 AL536_17260 PF13089 Polyphosphate kinase N-terminal domain AL536_17265 PF02541 Ppx/GppA phosphatase family AL536_17270 PF12849 PBP superfamily domain AL536_17275 PF00989 PAS fold AL536_17275 PF00512 His Kinase A (phospho-acceptor) domain AL536_17275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_17275 PF11808 Phosphate regulon sensor protein PhoR AL536_17280 PF00486 Transcriptional regulatory protein, C terminal AL536_17280 PF00072 Response regulator receiver domain AL536_17285 PF04381 Putative exonuclease, RdgC AL536_17295 PF12838 4Fe-4S dicluster domain AL536_17300 PF07690 Major Facilitator Superfamily AL536_17310 PF04542 Sigma-70 region 2 AL536_17310 PF04545 Sigma-70, region 4 AL536_17320 PF03502 Nucleoside-specific channel-forming protein, Tsx AL536_17325 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL536_17325 PF02558 Ketopantoate reductase PanE/ApbA AL536_17330 PF01965 DJ-1/PfpI family AL536_17335 PF00266 Aminotransferase class-V AL536_17345 PF02657 Fe-S metabolism associated domain AL536_17350 PF00899 ThiF family AL536_17355 PF03562 MltA specific insert domain AL536_17355 PF06725 3D domain AL536_17365 PF00696 Amino acid kinase family AL536_17365 PF00583 Acetyltransferase (GNAT) family AL536_17375 PF13538 UvrD-like helicase C-terminal domain AL536_17380 PF12705 PD-(D/E)XK nuclease superfamily AL536_17380 PF00580 UvrD/REP helicase N-terminal domain AL536_17380 PF13361 UvrD-like helicase C-terminal domain AL536_17385 PF17946 RecC C-terminal domain AL536_17395 PF03466 LysR substrate binding domain AL536_17395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_17400 PF07130 YebG protein AL536_17405 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AL536_17405 PF14602 Hexapeptide repeat of succinyl-transferase AL536_17410 PF00962 Adenosine/AMP deaminase AL536_17420 PF00583 Acetyltransferase (GNAT) family AL536_17425 PF08443 RimK-like ATP-grasp domain AL536_17425 PF18030 RimK PreATP-grasp domain AL536_17425 PF02080 TrkA-C domain AL536_17430 PF01544 CorA-like Mg2+ transporter protein AL536_17440 PF01588 Putative tRNA binding domain AL536_17445 PF01263 Aldose 1-epimerase AL536_17455 PF02417 Chromate transporter AL536_17460 PF11849 Domain of unknown function (DUF3369) AL536_17480 PF00437 Type II/IV secretion system protein AL536_17510 PF04972 BON domain AL536_17510 PF00263 Bacterial type II and III secretion system protein AL536_17510 PF13629 Pilus formation protein N terminal region AL536_17535 PF12833 Helix-turn-helix domain AL536_17535 PF02311 AraC-like ligand binding domain AL536_17540 PF00501 AMP-binding enzyme AL536_17550 PF03466 LysR substrate binding domain AL536_17550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_17555 PF03466 LysR substrate binding domain AL536_17555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_17560 PF00679 Elongation factor G C-terminus AL536_17560 PF14492 Elongation Factor G, domain II AL536_17560 PF03144 Elongation factor Tu domain 2 AL536_17560 PF03764 Elongation factor G, domain IV AL536_17560 PF00009 Elongation factor Tu GTP binding domain AL536_17565 PF18073 Rubredoxin metal binding domain AL536_17575 PF18429 Domain of unknown function (DUF5609) AL536_17585 PF01048 Phosphorylase superfamily AL536_17590 PF01676 Metalloenzyme superfamily AL536_17595 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AL536_17595 PF00591 Glycosyl transferase family, a/b domain AL536_17595 PF02885 Glycosyl transferase family, helical bundle domain AL536_17600 PF01791 DeoC/LacD family aldolase AL536_17605 PF01773 Na+ dependent nucleoside transporter N-terminus AL536_17605 PF07662 Na+ dependent nucleoside transporter C-terminus AL536_17605 PF07670 Nucleoside recognition AL536_17630 PF01026 TatD related DNase AL536_17635 PF03883 Peroxide stress protein YaaA AL536_17640 PF01235 Sodium:alanine symporter family AL536_17655 PF03167 Uracil DNA glycosylase superfamily AL536_17660 PF01261 Xylose isomerase-like TIM barrel AL536_17665 PF01228 Glycine radical AL536_17670 PF14821 Threonine synthase N terminus AL536_17670 PF00291 Pyridoxal-phosphate dependent enzyme AL536_17675 PF08544 GHMP kinases C terminal AL536_17675 PF00288 GHMP kinases N terminal domain AL536_17680 PF01842 ACT domain AL536_17680 PF03447 Homoserine dehydrogenase, NAD binding domain AL536_17680 PF00696 Amino acid kinase family AL536_17680 PF13840 ACT domain AL536_17680 PF00742 Homoserine dehydrogenase AL536_17690 PF03737 Aldolase/RraA AL536_17700 PF00072 Response regulator receiver domain AL536_17700 PF00486 Transcriptional regulatory protein, C terminal AL536_17710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_17710 PF00512 His Kinase A (phospho-acceptor) domain AL536_17710 PF18415 Histidine kinase receptor ArcB trans-membrane domain AL536_17710 PF01627 Hpt domain AL536_17710 PF00989 PAS fold AL536_17710 PF00072 Response regulator receiver domain AL536_17715 PF01590 GAF domain AL536_17715 PF00990 Diguanylate cyclase, GGDEF domain AL536_17715 PF00360 Phytochrome region AL536_17715 PF00563 EAL domain AL536_17720 PF16199 Radical_SAM C-terminal domain AL536_17720 PF04055 Radical SAM superfamily AL536_17725 PF01645 Conserved region in glutamate synthase AL536_17725 PF04898 Glutamate synthase central domain AL536_17725 PF00310 Glutamine amidotransferases class-II AL536_17725 PF01493 GXGXG motif AL536_17730 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_17730 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL536_17735 PF00310 Glutamine amidotransferases class-II AL536_17735 PF04898 Glutamate synthase central domain AL536_17735 PF01645 Conserved region in glutamate synthase AL536_17735 PF01493 GXGXG motif AL536_17740 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL536_17740 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_17760 PF01497 Periplasmic binding protein AL536_17765 PF03458 UPF0126 domain AL536_17785 PF03466 LysR substrate binding domain AL536_17785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_17790 PF01925 Sulfite exporter TauE/SafE AL536_17795 PF02142 MGS-like domain AL536_17795 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL536_17795 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL536_17800 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL536_17800 PF00117 Glutamine amidotransferase class-I AL536_17810 PF00293 NUDIX domain AL536_17815 PF02810 SEC-C motif AL536_17815 PF07517 SecA DEAD-like domain AL536_17815 PF01043 SecA preprotein cross-linking domain AL536_17815 PF07516 SecA Wing and Scaffold domain AL536_17825 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL536_17830 PF12327 FtsZ family, C-terminal domain AL536_17830 PF00091 Tubulin/FtsZ family, GTPase domain AL536_17835 PF02491 SHS2 domain inserted in FTSA AL536_17840 PF03799 Cell division protein FtsQ AL536_17840 PF08478 POTRA domain, FtsQ-type AL536_17845 PF01225 Mur ligase family, catalytic domain AL536_17845 PF08245 Mur ligase middle domain AL536_17845 PF02875 Mur ligase family, glutamate ligase domain AL536_17850 PF03033 Glycosyltransferase family 28 N-terminal domain AL536_17850 PF04101 Glycosyltransferase family 28 C-terminal domain AL536_17855 PF01098 Cell cycle protein AL536_17860 PF08245 Mur ligase middle domain AL536_17860 PF02875 Mur ligase family, glutamate ligase domain AL536_17865 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AL536_17865 PF00953 Glycosyl transferase family 4 AL536_17870 PF02875 Mur ligase family, glutamate ligase domain AL536_17870 PF01225 Mur ligase family, catalytic domain AL536_17870 PF08245 Mur ligase middle domain AL536_17875 PF01225 Mur ligase family, catalytic domain AL536_17875 PF02875 Mur ligase family, glutamate ligase domain AL536_17875 PF08245 Mur ligase middle domain AL536_17880 PF00905 Penicillin binding protein transpeptidase domain AL536_17880 PF03717 Penicillin-binding Protein dimerisation domain AL536_17885 PF04999 Cell division protein FtsL AL536_17890 PF01795 MraW methylase family AL536_17900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL536_17905 PF04348 LppC putative lipoprotein AL536_17910 PF02021 Uncharacterised protein family UPF0102 AL536_17915 PF13580 SIS domain AL536_17920 PF04972 BON domain AL536_17925 PF04386 Stringent starvation protein B AL536_17930 PF00043 Glutathione S-transferase, C-terminal domain AL536_17930 PF02798 Glutathione S-transferase, N-terminal domain AL536_17935 PF02167 Cytochrome C1 family AL536_17940 PF00032 Cytochrome b(C-terminal)/b6/petD AL536_17940 PF00033 Cytochrome b/b6/petB AL536_17945 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL536_17945 PF00355 Rieske [2Fe-2S] domain AL536_17950 PF00380 Ribosomal protein S9/S16 AL536_17955 PF00572 Ribosomal protein L13 AL536_17960 PF03969 AFG1-like ATPase AL536_17965 PF06295 Protein of unknown function (DUF1043) AL536_17970 PF00595 PDZ domain AL536_17970 PF13180 PDZ domain AL536_17975 PF13180 PDZ domain AL536_17980 PF01245 Ribosomal protein L19 AL536_17990 PF05239 PRC-barrel domain AL536_17990 PF01782 RimM N-terminal domain AL536_17995 PF00886 Ribosomal protein S16 AL536_18000 PF02881 SRP54-type protein, helical bundle domain AL536_18000 PF00448 SRP54-type protein, GTPase domain AL536_18000 PF02978 Signal peptide binding domain AL536_18005 PF01578 Cytochrome C assembly protein AL536_18010 PF00571 CBS domain AL536_18010 PF03471 Transporter associated domain AL536_18010 PF01595 Cyclin M transmembrane N-terminal domain AL536_18015 PF02664 S-Ribosylhomocysteinase (LuxS) AL536_18025 PF04262 Glutamate-cysteine ligase AL536_18030 PF00675 Insulinase (Peptidase family M16) AL536_18030 PF05193 Peptidase M16 inactive domain AL536_18035 PF09335 SNARE associated Golgi protein AL536_18040 PF00107 Zinc-binding dehydrogenase AL536_18040 PF08240 Alcohol dehydrogenase GroES-like domain AL536_18045 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL536_18050 PF00682 HMGL-like AL536_18050 PF02436 Conserved carboxylase domain AL536_18050 PF00364 Biotin-requiring enzyme AL536_18055 PF04277 Oxaloacetate decarboxylase, gamma chain AL536_18100 PF02599 Global regulator protein family AL536_18105 PF00696 Amino acid kinase family AL536_18105 PF01842 ACT domain AL536_18105 PF13840 ACT domain AL536_18110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL536_18110 PF01411 tRNA synthetases class II (A) AL536_18110 PF02272 DHHA1 domain AL536_18115 PF02631 RecX family AL536_18120 PF00154 recA bacterial DNA recombination protein AL536_18125 PF02464 Competence-damaged protein AL536_18130 PF05188 MutS domain II AL536_18130 PF00488 MutS domain V AL536_18130 PF05190 MutS family domain IV AL536_18130 PF05192 MutS domain III AL536_18130 PF01624 MutS domain I AL536_18135 PF04539 Sigma-70 region 3 AL536_18135 PF04545 Sigma-70, region 4 AL536_18135 PF04542 Sigma-70 region 2 AL536_18135 PF00140 Sigma-70 factor, region 1.2 AL536_18140 PF01476 LysM domain AL536_18140 PF01551 Peptidase family M23 AL536_18150 PF01975 Survival protein SurE AL536_18155 PF01142 tRNA pseudouridine synthase D (TruD) AL536_18160 PF02542 YgbB family AL536_18165 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL536_18170 PF04977 Septum formation initiator AL536_18175 PF02673 Bacitracin resistance protein BacA AL536_18180 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL536_18185 PF02152 Dihydroneopterin aldolase AL536_18190 PF02660 Glycerol-3-phosphate acyltransferase AL536_18195 PF00364 Biotin-requiring enzyme AL536_18195 PF00561 alpha/beta hydrolase fold AL536_18200 PF00814 Glycoprotease family AL536_18205 PF01165 Ribosomal protein S21 AL536_18210 PF09424 Yqey-like protein AL536_18215 PF01807 CHC2 zinc finger AL536_18215 PF08278 DNA primase DnaG DnaB-binding AL536_18215 PF10410 DnaB-helicase binding domain of primase AL536_18215 PF08275 DNA primase catalytic core, N-terminal domain AL536_18220 PF04545 Sigma-70, region 4 AL536_18220 PF04542 Sigma-70 region 2 AL536_18220 PF04546 Sigma-70, non-essential region AL536_18220 PF04539 Sigma-70 region 3 AL536_18220 PF03979 Sigma-70 factor, region 1.1 AL536_18220 PF00140 Sigma-70 factor, region 1.2 AL536_18240 PF03448 MgtE intracellular N domain AL536_18240 PF00571 CBS domain AL536_18240 PF01769 Divalent cation transporter AL536_18260 PF03480 Bacterial extracellular solute-binding protein, family 7 AL536_18275 PF00145 C-5 cytosine-specific DNA methylase AL536_18295 PF00140 Sigma-70 factor, region 1.2 AL536_18295 PF04542 Sigma-70 region 2 AL536_18295 PF04545 Sigma-70, region 4 AL536_18295 PF04539 Sigma-70 region 3 AL536_18305 PF06527 TniQ AL536_18305 PF15978 Tn7-like transposition protein D AL536_18310 PF13401 AAA domain AL536_18310 PF11426 Tn7 transposition regulator TnsC AL536_18315 PF00665 Integrase core domain AL536_18320 PF08722 TnsA endonuclease N terminal AL536_18320 PF08721 TnsA endonuclease C terminal AL536_18325 PF06160 Septation ring formation regulator, EzrA AL536_18330 PF01380 SIS domain AL536_18335 PF00455 DeoR C terminal sensor domain AL536_18335 PF08220 DeoR-like helix-turn-helix domain AL536_18340 PF00224 Pyruvate kinase, barrel domain AL536_18340 PF02887 Pyruvate kinase, alpha/beta domain AL536_18345 PF17158 Membrane-associated sensor, integral membrane domain AL536_18345 PF00990 Diguanylate cyclase, GGDEF domain AL536_18355 PF03466 LysR substrate binding domain AL536_18355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_18360 PF01810 LysE type translocator AL536_18370 PF00924 Mechanosensitive ion channel AL536_18370 PF05552 Conserved TM helix AL536_18375 PF01116 Fructose-bisphosphate aldolase class-II AL536_18380 PF00162 Phosphoglycerate kinase AL536_18385 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL536_18385 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL536_18390 PF00593 TonB dependent receptor AL536_18390 PF07715 TonB-dependent Receptor Plug Domain AL536_18395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_18395 PF03466 LysR substrate binding domain AL536_18400 PF00456 Transketolase, thiamine diphosphate binding domain AL536_18400 PF02780 Transketolase, C-terminal domain AL536_18400 PF02779 Transketolase, pyrimidine binding domain AL536_18405 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL536_18405 PF02772 S-adenosylmethionine synthetase, central domain AL536_18405 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL536_18415 PF17283 SprT-like zinc ribbon domain AL536_18415 PF10263 SprT-like family AL536_18420 PF04231 Endonuclease I AL536_18425 PF04452 RNA methyltransferase AL536_18430 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL536_18430 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL536_18435 PF02622 Uncharacterized ACR, COG1678 AL536_18440 PF03652 Holliday junction resolvase AL536_18445 PF00437 Type II/IV secretion system protein AL536_18450 PF00437 Type II/IV secretion system protein AL536_18455 PF01168 Alanine racemase, N-terminal domain AL536_18460 PF03807 NADP oxidoreductase coenzyme F420-dependent AL536_18460 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL536_18465 PF02325 YGGT family AL536_18470 PF02594 Uncharacterised ACR, YggU family COG1872 AL536_18480 PF01725 Ham1 family AL536_18485 PF04055 Radical SAM superfamily AL536_18485 PF06969 HemN C-terminal domain AL536_18490 PF00730 HhH-GPD superfamily base excision DNA repair protein AL536_18495 PF04960 Glutaminase AL536_18500 PF02390 Putative methyltransferase AL536_18505 PF00633 Helix-hairpin-helix motif AL536_18505 PF00730 HhH-GPD superfamily base excision DNA repair protein AL536_18505 PF14815 NUDIX domain AL536_18505 PF10576 Iron-sulfur binding domain of endonuclease III AL536_18510 PF04362 Bacterial Fe(2+) trafficking AL536_18515 PF01464 Transglycosylase SLT domain AL536_18515 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL536_18540 PF02743 Cache domain AL536_18540 PF00672 HAMP domain AL536_18540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_18570 PF00226 DnaJ domain AL536_18570 PF05099 Tellurite resistance protein TerB AL536_18575 PF04453 LPS transport system D AL536_18575 PF03968 OstA-like protein AL536_18580 PF09312 SurA N-terminal domain AL536_18585 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL536_18590 PF00398 Ribosomal RNA adenine dimethylase AL536_18595 PF04379 ApaG domain AL536_18600 PF00149 Calcineurin-like phosphoesterase AL536_18605 PF00186 Dihydrofolate reductase AL536_18610 PF06738 Putative threonine/serine exporter AL536_18610 PF12821 Threonine/Serine exporter, ThrE AL536_18615 PF06738 Putative threonine/serine exporter AL536_18620 PF01926 50S ribosome-binding GTPase AL536_18620 PF01018 GTP1/OBG AL536_18625 PF01016 Ribosomal L27 protein AL536_18630 PF00829 Ribosomal prokaryotic L21 protein AL536_18635 PF00348 Polyprenyl synthetase AL536_18640 PF13520 Amino acid permease AL536_18645 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL536_18645 PF00056 lactate/malate dehydrogenase, NAD binding domain AL536_18665 PF00582 Universal stress protein family AL536_18680 PF06877 Regulator of ribonuclease activity B AL536_18685 PF01523 Putative modulator of DNA gyrase AL536_18690 PF00795 Carbon-nitrogen hydrolase AL536_18695 PF13116 Protein of unknown function AL536_18695 PF13502 AsmA-like C-terminal region AL536_18700 PF10150 Ribonuclease E/G family AL536_18700 PF00575 S1 RNA binding domain AL536_18705 PF02545 Maf-like protein AL536_18710 PF04093 rod shape-determining protein MreD AL536_18715 PF04085 rod shape-determining protein MreC AL536_18750 PF00114 Pilin (bacterial filament) AL536_18750 PF07963 Prokaryotic N-terminal methylation motif AL536_18755 PF07963 Prokaryotic N-terminal methylation motif AL536_18755 PF00114 Pilin (bacterial filament) AL536_18765 PF00482 Type II secretion system (T2SS), protein F AL536_18770 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL536_18770 PF00437 Type II/IV secretion system protein AL536_18780 PF01471 Putative peptidoglycan binding domain AL536_18780 PF13401 AAA domain AL536_18785 PF00263 Bacterial type II and III secretion system protein AL536_18785 PF03958 Bacterial type II/III secretion system short domain AL536_18805 PF17157 Gammaproteobacterial periplasmic sensor domain AL536_18805 PF00990 Diguanylate cyclase, GGDEF domain AL536_18805 PF00563 EAL domain AL536_18810 PF00436 Single-strand binding protein family AL536_18815 PF00196 Bacterial regulatory proteins, luxR family AL536_18820 PF00483 Nucleotidyl transferase AL536_18825 PF17760 UvrA interaction domain AL536_18825 PF00005 ABC transporter AL536_18825 PF17755 UvrA DNA-binding domain AL536_18835 PF00266 Aminotransferase class-V AL536_18840 PF00696 Amino acid kinase family AL536_18840 PF01842 ACT domain AL536_18845 PF02574 Homocysteine S-methyltransferase AL536_18845 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL536_18845 PF00809 Pterin binding enzyme AL536_18845 PF02607 B12 binding domain AL536_18845 PF02310 B12 binding domain AL536_18850 PF00999 Sodium/hydrogen exchanger family AL536_18920 PF01507 Phosphoadenosine phosphosulfate reductase family AL536_18925 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL536_18925 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL536_18930 PF00258 Flavodoxin AL536_18930 PF00667 FAD binding domain AL536_18930 PF00175 Oxidoreductase NAD-binding domain AL536_18950 PF01207 Dihydrouridine synthase (Dus) AL536_18955 PF01475 Ferric uptake regulator family AL536_18965 PF00342 Phosphoglucose isomerase AL536_18970 PF01894 Uncharacterised protein family UPF0047 AL536_18975 PF01168 Alanine racemase, N-terminal domain AL536_18975 PF00842 Alanine racemase, C-terminal domain AL536_18980 PF03796 DnaB-like helicase C terminal domain AL536_18980 PF00772 DnaB-like helicase N terminal domain AL536_18990 PF01281 Ribosomal protein L9, N-terminal domain AL536_18990 PF03948 Ribosomal protein L9, C-terminal domain AL536_18995 PF01084 Ribosomal protein S18 AL536_19000 PF01250 Ribosomal protein S6 AL536_19005 PF00210 Ferritin-like domain AL536_19010 PF04324 BFD-like [2Fe-2S] binding domain AL536_19015 PF03143 Elongation factor Tu C-terminal domain AL536_19015 PF03144 Elongation factor Tu domain 2 AL536_19015 PF00009 Elongation factor Tu GTP binding domain AL536_19020 PF14492 Elongation Factor G, domain II AL536_19020 PF03764 Elongation factor G, domain IV AL536_19020 PF00679 Elongation factor G C-terminus AL536_19020 PF00009 Elongation factor Tu GTP binding domain AL536_19020 PF03144 Elongation factor Tu domain 2 AL536_19025 PF00177 Ribosomal protein S7p/S5e AL536_19030 PF00164 Ribosomal protein S12/S23 AL536_19035 PF04077 DsrH like protein AL536_19040 PF02635 DsrE/DsrF-like family AL536_19045 PF02635 DsrE/DsrF-like family AL536_19050 PF13309 HTH domain AL536_19050 PF08348 YheO-like PAS domain AL536_19055 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL536_19055 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL536_19065 PF04102 SlyX AL536_19070 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AL536_19075 PF01145 SPFH domain / Band 7 family AL536_19080 PF12221 Bacterial membrane protein N terminal AL536_19080 PF01145 SPFH domain / Band 7 family AL536_19085 PF13167 GTP-binding GTPase N-terminal AL536_19085 PF16360 GTP-binding GTPase Middle Region AL536_19085 PF01926 50S ribosome-binding GTPase AL536_19090 PF17209 Hfq protein AL536_19100 PF01119 DNA mismatch repair protein, C-terminal domain AL536_19100 PF08676 MutL C terminal dimerisation domain AL536_19105 PF01520 N-acetylmuramoyl-L-alanine amidase AL536_19110 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL536_19115 PF08331 Domain of unknown function (DUF1730) AL536_19165 PF00929 Exonuclease AL536_19170 PF03193 RsgA GTPase AL536_19175 PF02666 Phosphatidylserine decarboxylase AL536_19180 PF02080 TrkA-C domain AL536_19180 PF03600 Citrate transporter AL536_19185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_19185 PF00672 HAMP domain AL536_19195 PF01676 Metalloenzyme superfamily AL536_19195 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AL536_19200 PF01551 Peptidase family M23 AL536_19210 PF00440 Bacterial regulatory proteins, tetR family AL536_19210 PF08360 QacR-like protein, C-terminal region AL536_19215 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL536_19220 PF09297 NADH pyrophosphatase zinc ribbon domain AL536_19220 PF00293 NUDIX domain AL536_19225 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AL536_19230 PF04983 RNA polymerase Rpb1, domain 3 AL536_19230 PF04997 RNA polymerase Rpb1, domain 1 AL536_19230 PF00623 RNA polymerase Rpb1, domain 2 AL536_19230 PF04998 RNA polymerase Rpb1, domain 5 AL536_19230 PF05000 RNA polymerase Rpb1, domain 4 AL536_19235 PF04563 RNA polymerase beta subunit AL536_19235 PF04561 RNA polymerase Rpb2, domain 2 AL536_19235 PF04565 RNA polymerase Rpb2, domain 3 AL536_19235 PF10385 RNA polymerase beta subunit external 1 domain AL536_19235 PF00562 RNA polymerase Rpb2, domain 6 AL536_19235 PF04560 RNA polymerase Rpb2, domain 7 AL536_19240 PF16320 Ribosomal protein L7/L12 dimerisation domain AL536_19240 PF00542 Ribosomal protein L7/L12 C-terminal domain AL536_19245 PF00466 Ribosomal protein L10 AL536_19250 PF00687 Ribosomal protein L1p/L10e family AL536_19255 PF00298 Ribosomal protein L11, RNA binding domain AL536_19255 PF03946 Ribosomal protein L11, N-terminal domain AL536_19260 PF02357 Transcription termination factor nusG AL536_19260 PF00467 KOW motif AL536_19265 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL536_19275 PF03144 Elongation factor Tu domain 2 AL536_19275 PF03143 Elongation factor Tu C-terminal domain AL536_19275 PF00009 Elongation factor Tu GTP binding domain AL536_19300 PF00485 Phosphoribulokinase / Uridine kinase family AL536_19305 PF03099 Biotin/lipoate A/B protein ligase family AL536_19305 PF08279 HTH domain AL536_19305 PF02237 Biotin protein ligase C terminal domain AL536_19310 PF01565 FAD binding domain AL536_19310 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL536_19320 PF13091 PLD-like domain AL536_19375 PF00175 Oxidoreductase NAD-binding domain AL536_19380 PF00970 Oxidoreductase FAD-binding domain AL536_19380 PF00175 Oxidoreductase NAD-binding domain AL536_19380 PF00111 2Fe-2S iron-sulfur cluster binding domain AL536_19385 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL536_19395 PF07498 Rho termination factor, N-terminal domain AL536_19395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL536_19395 PF07497 Rho termination factor, RNA-binding domain AL536_19400 PF00085 Thioredoxin AL536_19405 PF00271 Helicase conserved C-terminal domain AL536_19405 PF00270 DEAD/DEAH box helicase AL536_19410 PF02541 Ppx/GppA phosphatase family AL536_19415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_19415 PF00512 His Kinase A (phospho-acceptor) domain AL536_19415 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL536_19415 PF00072 Response regulator receiver domain AL536_19420 PF12832 MFS_1 like family AL536_19435 PF00501 AMP-binding enzyme AL536_19435 PF13193 AMP-binding enzyme C-terminal domain AL536_19435 PF16177 Acetyl-coenzyme A synthetase N-terminus AL536_19440 PF01220 Dehydroquinase class II AL536_19445 PF00364 Biotin-requiring enzyme AL536_19450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL536_19450 PF02785 Biotin carboxylase C-terminal domain AL536_19450 PF00289 Biotin carboxylase, N-terminal domain AL536_19460 PF01207 Dihydrouridine synthase (Dus) AL536_19465 PF02954 Bacterial regulatory protein, Fis family AL536_19470 PF17200 Single Cache domain 2 AL536_19470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_19470 PF00672 HAMP domain AL536_19475 PF13411 MerR HTH family regulatory protein AL536_19480 PF02142 MGS-like domain AL536_19480 PF01808 AICARFT/IMPCHase bienzyme AL536_19485 PF02844 Phosphoribosylglycinamide synthetase, N domain AL536_19485 PF02843 Phosphoribosylglycinamide synthetase, C domain AL536_19485 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL536_19495 PF00216 Bacterial DNA-binding protein AL536_19500 PF01595 Cyclin M transmembrane N-terminal domain AL536_19500 PF00571 CBS domain AL536_19505 PF00924 Mechanosensitive ion channel AL536_19510 PF04222 Protein of unknown function (DUF416) AL536_19515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL536_19520 PF03167 Uracil DNA glycosylase superfamily AL536_19525 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AL536_19525 PF00753 Metallo-beta-lactamase superfamily AL536_19525 PF10996 Beta-Casp domain AL536_19530 PF00953 Glycosyl transferase family 4 AL536_19545 PF02350 UDP-N-acetylglucosamine 2-epimerase AL536_19550 PF01370 NAD dependent epimerase/dehydratase family AL536_19555 PF08485 Polysaccharide biosynthesis protein C-terminal AL536_19555 PF02719 Polysaccharide biosynthesis protein AL536_19565 PF00534 Glycosyl transferases group 1 AL536_19565 PF13477 Glycosyl transferase 4-like AL536_19570 PF01476 LysM domain AL536_19595 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AL536_19600 PF04321 RmlD substrate binding domain AL536_19605 PF00483 Nucleotidyl transferase AL536_19610 PF16363 GDP-mannose 4,6 dehydratase AL536_19615 PF02706 Chain length determinant protein AL536_19615 PF13807 G-rich domain on putative tyrosine kinase AL536_19615 PF13614 AAA domain AL536_19620 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL536_19625 PF10531 SLBB domain AL536_19625 PF02563 Polysaccharide biosynthesis/export protein AL536_19625 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL536_19635 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF AL536_19645 PF06082 Exopolysaccharide biosynthesis protein YbjH AL536_19650 PF01370 NAD dependent epimerase/dehydratase family AL536_19655 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL536_19655 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL536_19655 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL536_19660 PF03279 Bacterial lipid A biosynthesis acyltransferase AL536_19670 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL536_19675 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL536_19680 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL536_19685 PF00534 Glycosyl transferases group 1 AL536_19695 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL536_19700 PF00535 Glycosyl transferase family 2 AL536_19705 PF13439 Glycosyltransferase Family 4 AL536_19705 PF00534 Glycosyl transferases group 1 AL536_19710 PF13439 Glycosyltransferase Family 4 AL536_19710 PF00534 Glycosyl transferases group 1 AL536_19715 PF01467 Cytidylyltransferase-like AL536_19725 PF01370 NAD dependent epimerase/dehydratase family AL536_19730 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL536_19730 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL536_19730 PF06827 Zinc finger found in FPG and IleRS AL536_19740 PF00471 Ribosomal protein L33 AL536_19750 PF04002 RadC-like JAB domain AL536_19755 PF17200 Single Cache domain 2 AL536_19755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL536_19755 PF00672 HAMP domain AL536_19760 PF02441 Flavoprotein AL536_19760 PF04127 DNA / pantothenate metabolism flavoprotein AL536_19765 PF00440 Bacterial regulatory proteins, tetR family AL536_19770 PF03279 Bacterial lipid A biosynthesis acyltransferase AL536_19775 PF00156 Phosphoribosyl transferase domain AL536_19780 PF01138 3' exoribonuclease family, domain 1 AL536_19780 PF03725 3' exoribonuclease family, domain 2 AL536_19785 PF08340 Domain of unknown function (DUF1732) AL536_19785 PF03755 YicC-like family, N-terminal region AL536_19790 PF03350 Uncharacterized protein family, UPF0114 AL536_19795 PF00593 TonB dependent receptor AL536_19795 PF07715 TonB-dependent Receptor Plug Domain AL536_19800 PF01032 FecCD transport family AL536_19805 PF01497 Periplasmic binding protein AL536_19810 PF00005 ABC transporter AL536_19815 PF00664 ABC transporter transmembrane region AL536_19815 PF00005 ABC transporter AL536_19830 PF00270 DEAD/DEAH box helicase AL536_19830 PF16124 RecQ zinc-binding AL536_19830 PF09382 RQC domain AL536_19830 PF00570 HRDC domain AL536_19830 PF00271 Helicase conserved C-terminal domain AL536_19835 PF00892 EamA-like transporter family AL536_19845 PF01810 LysE type translocator AL536_19855 PF00580 UvrD/REP helicase N-terminal domain AL536_19855 PF13361 UvrD-like helicase C-terminal domain AL536_19865 PF05114 Protein of unknown function (DUF692) AL536_19885 PF01432 Peptidase family M3 AL536_19890 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL536_19895 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_19895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL536_19900 PF01047 MarR family AL536_19910 PF00529 HlyD membrane-fusion protein of T1SS AL536_19910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL536_19915 PF00873 AcrB/AcrD/AcrF family AL536_19925 PF00528 Binding-protein-dependent transport system inner membrane component AL536_19925 PF12911 N-terminal TM domain of oligopeptide transport permease C AL536_19935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL536_19940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL536_19940 PF00005 ABC transporter AL536_19970 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL536_19975 PF00580 UvrD/REP helicase N-terminal domain AL536_19975 PF13361 UvrD-like helicase C-terminal domain AL536_19980 PF16295 Tetracyclin repressor-like, C-terminal domain AL536_19980 PF00440 Bacterial regulatory proteins, tetR family AL536_19985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL536_19990 PF00873 AcrB/AcrD/AcrF family AL536_19995 PF04380 Membrane fusogenic activity AL536_20000 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL536_20000 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL536_20005 PF03466 LysR substrate binding domain AL536_20005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_20045 PF00132 Bacterial transferase hexapeptide (six repeats) AL536_20050 PF07369 Protein of unknown function (DUF1488) AL536_20055 PF08501 Shikimate dehydrogenase substrate binding domain AL536_20055 PF01488 Shikimate / quinate 5-dehydrogenase AL536_20055 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL536_20060 PF01218 Coproporphyrinogen III oxidase AL536_20065 PF01300 Telomere recombination AL536_20070 PF00731 AIR carboxylase AL536_20075 PF02222 ATP-grasp domain AL536_20075 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL536_20080 PF01396 Topoisomerase DNA binding C4 zinc finger AL536_20085 PF04361 Protein of unknown function (DUF494) AL536_20090 PF02481 DNA recombination-mediator protein A AL536_20090 PF17782 DprA winged helix domain AL536_20095 PF01476 LysM domain AL536_20100 PF01327 Polypeptide deformylase AL536_20105 PF00551 Formyl transferase AL536_20105 PF02911 Formyl transferase, C-terminal domain AL536_20110 PF01029 NusB family AL536_20110 PF01189 16S rRNA methyltransferase RsmB/F AL536_20115 PF02080 TrkA-C domain AL536_20115 PF02254 TrkA-N domain AL536_20120 PF02386 Cation transport protein AL536_20130 PF03006 Haemolysin-III related AL536_20135 PF07070 SpoOM protein AL536_20140 PF06288 Protein of unknown function (DUF1040) AL536_20145 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL536_20145 PF13746 4Fe-4S dicluster domain AL536_20145 PF12801 4Fe-4S binding domain AL536_20150 PF01636 Phosphotransferase enzyme family AL536_20155 PF01323 DSBA-like thioredoxin domain AL536_20160 PF01553 Acyltransferase AL536_20165 PF13335 Magnesium chelatase, subunit ChlI C-terminal AL536_20165 PF01078 Magnesium chelatase, subunit ChlI AL536_20170 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL536_20170 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL536_20170 PF00205 Thiamine pyrophosphate enzyme, central domain AL536_20180 PF01063 Amino-transferase class IV AL536_20185 PF00920 Dehydratase family AL536_20190 PF00291 Pyridoxal-phosphate dependent enzyme AL536_20190 PF00585 C-terminal regulatory domain of Threonine dehydratase AL536_20195 PF08240 Alcohol dehydrogenase GroES-like domain AL536_20195 PF00107 Zinc-binding dehydrogenase AL536_20200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_20200 PF03466 LysR substrate binding domain AL536_20210 PF01206 Sulfurtransferase TusA AL536_20220 PF01169 Uncharacterized protein family UPF0016 AL536_20225 PF02091 Glycyl-tRNA synthetase alpha subunit AL536_20230 PF05746 DALR anticodon binding domain AL536_20230 PF02092 Glycyl-tRNA synthetase beta subunit AL536_20235 PF00155 Aminotransferase class I and II AL536_20240 PF00011 Hsp20/alpha crystallin family AL536_20245 PF01751 Toprim domain AL536_20245 PF18053 DNA gyrase B subunit insert domain AL536_20245 PF00986 DNA gyrase B subunit, carboxyl terminus AL536_20245 PF00204 DNA gyrase B AL536_20245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_20250 PF02463 RecF/RecN/SMC N terminal domain AL536_20255 PF00712 DNA polymerase III beta subunit, N-terminal domain AL536_20255 PF02767 DNA polymerase III beta subunit, central domain AL536_20255 PF02768 DNA polymerase III beta subunit, C-terminal domain AL536_20260 PF00308 Bacterial dnaA protein AL536_20260 PF11638 DnaA N-terminal domain AL536_20260 PF08299 Bacterial dnaA protein helix-turn-helix AL536_20265 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL536_20270 PF00528 Binding-protein-dependent transport system inner membrane component AL536_20275 PF00005 ABC transporter AL536_20280 PF00468 Ribosomal protein L34 AL536_20285 PF00825 Ribonuclease P AL536_20290 PF14849 YidC periplasmic domain AL536_20290 PF02096 60Kd inner membrane protein AL536_20295 PF12631 MnmE helical domain AL536_20295 PF01926 50S ribosome-binding GTPase AL536_20295 PF10396 GTP-binding protein TrmE N-terminus AL536_20300 PF00258 Flavodoxin AL536_20305 PF13932 GidA associated domain AL536_20305 PF01134 Glucose inhibited division protein A AL536_20310 PF02527 rRNA small subunit methyltransferase G AL536_20315 PF13614 AAA domain AL536_20320 PF02195 ParB-like nuclease domain AL536_20320 PF17762 HTH domain found in ParB protein AL536_20325 PF03899 ATP synthase I chain AL536_20330 PF00119 ATP synthase A chain AL536_20335 PF00137 ATP synthase subunit C AL536_20340 PF00430 ATP synthase B/B' CF(0) AL536_20345 PF00213 ATP synthase delta (OSCP) subunit AL536_20350 PF00306 ATP synthase alpha/beta chain, C terminal domain AL536_20350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL536_20350 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL536_20355 PF00231 ATP synthase AL536_20360 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL536_20360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL536_20365 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL536_20365 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL536_20370 PF12804 MobA-like NTP transferase domain AL536_20370 PF14602 Hexapeptide repeat of succinyl-transferase AL536_20370 PF00132 Bacterial transferase hexapeptide (six repeats) AL536_20375 PF00528 Binding-protein-dependent transport system inner membrane component AL536_20380 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL536_20385 PF07690 Major Facilitator Superfamily AL536_20390 PF03466 LysR substrate binding domain AL536_20390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_20395 PF00108 Thiolase, N-terminal domain AL536_20395 PF02803 Thiolase, C-terminal domain AL536_20400 PF00378 Enoyl-CoA hydratase/isomerase AL536_20400 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL536_20400 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL536_20405 PF09186 Domain of unknown function (DUF1949) AL536_20405 PF01205 Uncharacterized protein family UPF0029 AL536_20410 PF02386 Cation transport protein AL536_20415 PF12724 Flavodoxin domain AL536_20465 PF07732 Multicopper oxidase AL536_20465 PF07731 Multicopper oxidase AL536_20465 PF00394 Multicopper oxidase AL536_20470 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL536_20475 PF13667 ThiC-associated domain AL536_20475 PF01964 Radical SAM ThiC family AL536_20480 PF02581 Thiamine monophosphate synthase AL536_20485 PF00899 ThiF family AL536_20490 PF02597 ThiS family AL536_20490 PF05690 Thiazole biosynthesis protein ThiG AL536_20500 PF06968 Biotin and Thiamin Synthesis associated domain AL536_20500 PF04055 Radical SAM superfamily AL536_20505 PF00005 ABC transporter AL536_20505 PF00571 CBS domain AL536_20510 PF00528 Binding-protein-dependent transport system inner membrane component AL536_20515 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL536_20520 PF05199 GMC oxidoreductase AL536_20520 PF00732 GMC oxidoreductase AL536_20535 PF00557 Metallopeptidase family M24 AL536_20535 PF00557 Metallopeptidase family M24 AL536_20535 PF01321 Creatinase/Prolidase N-terminal domain AL536_20535 PF01321 Creatinase/Prolidase N-terminal domain AL536_20540 PF03466 LysR substrate binding domain AL536_20540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_20545 PF07690 Major Facilitator Superfamily AL536_20555 PF01037 Lrp/AsnC ligand binding domain AL536_20560 PF00563 EAL domain AL536_20560 PF00990 Diguanylate cyclase, GGDEF domain AL536_20560 PF08448 PAS fold AL536_20565 PF04445 Putative SAM-dependent methyltransferase AL536_20575 PF00892 EamA-like transporter family AL536_20580 PF00582 Universal stress protein family AL536_20585 PF00210 Ferritin-like domain AL536_20590 PF10625 Universal stress protein B (UspB) AL536_20600 PF02653 Branched-chain amino acid transport system / permease component AL536_20605 PF00005 ABC transporter AL536_20610 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL536_20615 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL536_20615 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL536_20620 PF00596 Class II Aldolase and Adducin N-terminal domain AL536_20625 PF02610 L-arabinose isomerase AL536_20625 PF11762 L-arabinose isomerase C-terminal domain AL536_20635 PF02311 AraC-like ligand binding domain AL536_20635 PF12833 Helix-turn-helix domain AL536_20650 PF02646 RmuC family AL536_20655 PF01209 ubiE/COQ5 methyltransferase family AL536_20660 PF02036 SCP-2 sterol transfer family AL536_20665 PF03109 ABC1 family AL536_20675 PF02416 mttA/Hcf106 family AL536_20680 PF00902 Sec-independent protein translocase protein (TatC) AL536_20685 PF01026 TatD related DNase AL536_20690 PF00490 Delta-aminolevulinic acid dehydratase AL536_20700 PF01612 3'-5' exonuclease AL536_20700 PF00476 DNA polymerase family A AL536_20700 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL536_20700 PF01367 5'-3' exonuclease, C-terminal SAM fold AL536_20705 PF01926 50S ribosome-binding GTPase AL536_20710 PF00034 Cytochrome c AL536_20720 PF04220 Der GTPase activator (YihI) AL536_20725 PF10675 Protein of unknown function (DUF2489) AL536_20730 PF04055 Radical SAM superfamily AL536_20730 PF06969 HemN C-terminal domain AL536_20735 PF07219 HemY protein N-terminus AL536_20735 PF07719 Tetratricopeptide repeat AL536_20740 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AL536_20745 PF02602 Uroporphyrinogen-III synthase HemD AL536_20750 PF03900 Porphobilinogen deaminase, C-terminal domain AL536_20750 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL536_20755 PF12633 Adenylate cyclase NT domain AL536_20755 PF01295 Adenylate cyclase, class-I AL536_20760 PF01491 Frataxin-like domain AL536_20770 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL536_20770 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL536_20775 PF01678 Diaminopimelate epimerase AL536_20780 PF04340 Protein of unknown function, DUF484 AL536_20785 PF00589 Phage integrase family AL536_20785 PF02899 Phage integrase, N-terminal SAM-like domain AL536_20790 PF13419 Haloacid dehalogenase-like hydrolase AL536_20795 PF00563 EAL domain AL536_20795 PF00990 Diguanylate cyclase, GGDEF domain AL536_20795 PF10442 FIST C domain AL536_20795 PF08495 FIST N domain AL536_20820 PF12146 Serine aminopeptidase, S33 AL536_20825 PF01810 LysE type translocator AL536_20830 PF08668 HDOD domain AL536_20830 PF00563 EAL domain AL536_20835 PF01022 Bacterial regulatory protein, arsR family AL536_20840 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL536_20840 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL536_20855 PF00210 Ferritin-like domain AL536_20885 PF01914 MarC family integral membrane protein AL536_20900 PF02881 SRP54-type protein, helical bundle domain AL536_20900 PF00448 SRP54-type protein, GTPase domain AL536_20905 PF00005 ABC transporter AL536_20910 PF18075 FtsX extracellular domain AL536_20915 PF04545 Sigma-70, region 4 AL536_20915 PF00140 Sigma-70 factor, region 1.2 AL536_20915 PF04542 Sigma-70 region 2 AL536_20920 PF00581 Rhodanese-like domain AL536_20925 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL536_20925 PF01694 Rhomboid family AL536_20930 PF03748 Flagellar basal body-associated protein FliL AL536_20935 PF04345 Chorismate lyase AL536_20940 PF01040 UbiA prenyltransferase family AL536_20945 PF01553 Acyltransferase AL536_20950 PF01219 Prokaryotic diacylglycerol kinase AL536_20955 PF01726 LexA DNA binding domain AL536_20955 PF00717 Peptidase S24-like AL536_20965 PF01554 MatE AL536_20970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL536_20970 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_20975 PF00440 Bacterial regulatory proteins, tetR family AL536_21015 PF00075 RNase H AL536_21020 PF02673 Bacitracin resistance protein BacA AL536_21025 PF01699 Sodium/calcium exchanger protein AL536_21030 PF00924 Mechanosensitive ion channel AL536_21030 PF05552 Conserved TM helix AL536_21035 PF07690 Major Facilitator Superfamily AL536_21040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_21040 PF03466 LysR substrate binding domain AL536_21045 PF00563 EAL domain AL536_21045 PF00196 Bacterial regulatory proteins, luxR family AL536_21085 PF04002 RadC-like JAB domain AL536_21110 PF05958 tRNA (Uracil-5-)-methyltransferase AL536_21115 PF07715 TonB-dependent Receptor Plug Domain AL536_21115 PF00593 TonB dependent receptor AL536_21125 PF01177 Asp/Glu/Hydantoin racemase AL536_21185 PF00962 Adenosine/AMP deaminase AL536_21190 PF00563 EAL domain AL536_21190 PF00990 Diguanylate cyclase, GGDEF domain AL536_21190 PF03707 Bacterial signalling protein N terminal repeat AL536_21190 PF13188 PAS domain AL536_21195 PF02954 Bacterial regulatory protein, Fis family AL536_21195 PF00072 Response regulator receiver domain AL536_21195 PF00158 Sigma-54 interaction domain AL536_21200 PF00989 PAS fold AL536_21200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_21200 PF00512 His Kinase A (phospho-acceptor) domain AL536_21210 PF00120 Glutamine synthetase, catalytic domain AL536_21210 PF03951 Glutamine synthetase, beta-Grasp domain AL536_21230 PF03631 Virulence factor BrkB AL536_21235 PF02580 D-Tyr-tRNA(Tyr) deacylase AL536_21240 PF09500 Putative thioesterase (yiiD_Cterm) AL536_21240 PF00583 Acetyltransferase (GNAT) family AL536_21245 PF05170 AsmA family AL536_21250 PF01293 Phosphoenolpyruvate carboxykinase AL536_21255 PF01430 Hsp33 protein AL536_21260 PF01479 S4 domain AL536_21265 PF11356 Type II secretion system protein C AL536_21270 PF03958 Bacterial type II/III secretion system short domain AL536_21270 PF00263 Bacterial type II and III secretion system protein AL536_21275 PF00437 Type II/IV secretion system protein AL536_21280 PF00482 Type II secretion system (T2SS), protein F AL536_21285 PF08334 Type II secretion system (T2SS), protein G AL536_21285 PF07963 Prokaryotic N-terminal methylation motif AL536_21290 PF12019 Type II transport protein GspH AL536_21295 PF07963 Prokaryotic N-terminal methylation motif AL536_21295 PF02501 Type II secretion system (T2SS), protein I AL536_21300 PF11612 Type II secretion system (T2SS), protein J AL536_21300 PF07963 Prokaryotic N-terminal methylation motif AL536_21305 PF03934 Type II secretion system (T2SS), protein K AL536_21310 PF12693 GspL periplasmic domain AL536_21310 PF05134 Type II secretion system (T2SS), protein L AL536_21315 PF04612 Type II secretion system (T2SS), protein M AL536_21320 PF01203 Type II secretion system (T2SS), protein N AL536_21325 PF00459 Inositol monophosphatase family AL536_21330 PF00293 NUDIX domain AL536_21335 PF01521 Iron-sulphur cluster biosynthesis AL536_21335 PF01106 NifU-like domain AL536_21340 PF00156 Phosphoribosyl transferase domain AL536_21345 PF00561 alpha/beta hydrolase fold AL536_21355 PF16921 Tex protein YqgF-like domain AL536_21355 PF09371 Tex-like protein N-terminal domain AL536_21355 PF00575 S1 RNA binding domain AL536_21355 PF17674 HHH domain AL536_21365 PF03449 Transcription elongation factor, N-terminal AL536_21365 PF01272 Transcription elongation factor, GreA/GreB, C-term AL536_21370 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL536_21370 PF00356 Bacterial regulatory proteins, lacI family AL536_21375 PF00920 Dehydratase family AL536_21380 PF01202 Shikimate kinase AL536_21385 PF02447 GntP family permease AL536_21390 PF01081 KDPG and KHG aldolase AL536_21395 PF00072 Response regulator receiver domain AL536_21395 PF00486 Transcriptional regulatory protein, C terminal AL536_21400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_21400 PF00512 His Kinase A (phospho-acceptor) domain AL536_21400 PF00672 HAMP domain AL536_21405 PF00860 Permease family AL536_21410 PF17191 RecG wedge domain AL536_21410 PF00271 Helicase conserved C-terminal domain AL536_21410 PF00270 DEAD/DEAH box helicase AL536_21415 PF00588 SpoU rRNA Methylase family AL536_21415 PF12105 SpoU, rRNA methylase, C-terminal AL536_21420 PF13291 ACT domain AL536_21420 PF02824 TGS domain AL536_21420 PF04607 Region found in RelA / SpoT proteins AL536_21425 PF01192 RNA polymerase Rpb6 AL536_21430 PF00625 Guanylate kinase AL536_21435 PF02592 Putative vitamin uptake transporter AL536_21440 PF00474 Sodium:solute symporter family AL536_21450 PF02080 TrkA-C domain AL536_21450 PF03471 Transporter associated domain AL536_21450 PF00999 Sodium/hydrogen exchanger family AL536_21455 PF00196 Bacterial regulatory proteins, luxR family AL536_21455 PF00072 Response regulator receiver domain AL536_21460 PF11412 Disulphide bond corrector protein DsbC AL536_21460 PF02683 Cytochrome C biogenesis protein transmembrane region AL536_21465 PF02863 Arginine repressor, C-terminal domain AL536_21465 PF01316 Arginine repressor, DNA binding domain AL536_21470 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL536_21470 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL536_21475 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL536_21475 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL536_21480 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL536_21480 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL536_21485 PF00696 Amino acid kinase family AL536_21495 PF03606 C4-dicarboxylate anaerobic carrier AL536_21500 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL536_21505 PF00206 Lyase AL536_21505 PF10415 Fumarase C C-terminus AL536_21510 PF17158 Membrane-associated sensor, integral membrane domain AL536_21510 PF00990 Diguanylate cyclase, GGDEF domain AL536_21515 PF04186 FxsA cytoplasmic membrane protein AL536_21520 PF00588 SpoU rRNA Methylase family AL536_21525 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL536_21525 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL536_21530 PF16527 Two-component sensor protein CpxA, periplasmic domain AL536_21530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL536_21530 PF00512 His Kinase A (phospho-acceptor) domain AL536_21530 PF00672 HAMP domain AL536_21535 PF00072 Response regulator receiver domain AL536_21535 PF00486 Transcriptional regulatory protein, C terminal AL536_21545 PF01545 Cation efflux family AL536_21545 PF16916 Dimerisation domain of Zinc Transporter AL536_21550 PF00365 Phosphofructokinase AL536_21555 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AL536_21565 PF02219 Methylenetetrahydrofolate reductase AL536_21570 PF03447 Homoserine dehydrogenase, NAD binding domain AL536_21570 PF00742 Homoserine dehydrogenase AL536_21570 PF00696 Amino acid kinase family AL536_21575 PF01053 Cys/Met metabolism PLP-dependent enzyme AL536_21580 PF01340 Met Apo-repressor, MetJ AL536_21585 PF03949 Malic enzyme, NAD binding domain AL536_21585 PF00390 Malic enzyme, N-terminal domain AL536_21590 PF01197 Ribosomal protein L31 AL536_21595 PF00271 Helicase conserved C-terminal domain AL536_21595 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL536_21595 PF17764 3′ DNA-binding domain (3′BD) AL536_21595 PF18074 Primosomal protein N C-terminal domain AL536_21595 PF00270 DEAD/DEAH box helicase AL536_21600 PF00356 Bacterial regulatory proteins, lacI family AL536_21610 PF00227 Proteasome subunit AL536_21615 PF00004 ATPase family associated with various cellular activities (AAA) AL536_21615 PF07724 AAA domain (Cdc48 subfamily) AL536_21615 PF10431 C-terminal, D2-small domain, of ClpB protein AL536_21620 PF01040 UbiA prenyltransferase family AL536_21625 PF03737 Aldolase/RraA AL536_21635 PF00121 Triosephosphate isomerase AL536_21660 PF00166 Chaperonin 10 Kd subunit AL536_21665 PF00118 TCP-1/cpn60 chaperonin family AL536_21670 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AL536_21675 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AL536_21685 PF00005 ABC transporter AL536_21695 PF02308 MgtC family AL536_21700 PF04055 Radical SAM superfamily AL536_21705 PF01132 Elongation factor P (EF-P) OB domain AL536_21705 PF08207 Elongation factor P (EF-P) KOW-like domain AL536_21705 PF09285 Elongation factor P, C-terminal AL536_21710 PF02313 Fumarate reductase subunit D AL536_21715 PF02300 Fumarate reductase subunit C AL536_21720 PF13085 2Fe-2S iron-sulfur cluster binding domain AL536_21720 PF13183 4Fe-4S dicluster domain AL536_21725 PF00890 FAD binding domain AL536_21725 PF02910 Fumarate reductase flavoprotein C-term AL536_21730 PF00152 tRNA synthetases class II (D, K and N) AL536_21735 PF00581 Rhodanese-like domain AL536_21740 PF02556 Preprotein translocase subunit SecB AL536_21745 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL536_21745 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL536_21750 PF06426 Serine acetyltransferase, N-terminal AL536_21750 PF00132 Bacterial transferase hexapeptide (six repeats) AL536_21755 PF03551 Transcriptional regulator PadR-like family AL536_21755 PF10400 Virulence activator alpha C-term AL536_21760 PF00311 Phosphoenolpyruvate carboxylase AL536_21765 PF07687 Peptidase dimerisation domain AL536_21765 PF01546 Peptidase family M20/M25/M40 AL536_21770 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL536_21770 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL536_21775 PF00696 Amino acid kinase family AL536_21780 PF00764 Arginosuccinate synthase AL536_21785 PF14698 Argininosuccinate lyase C-terminal AL536_21785 PF00206 Lyase AL536_21785 PF00583 Acetyltransferase (GNAT) family AL536_21795 PF00462 Glutaredoxin AL536_21795 PF08534 Redoxin AL536_21800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL536_21800 PF03466 LysR substrate binding domain AL536_21805 PF00912 Transglycosylase AL536_21805 PF17092 Penicillin-binding protein OB-like domain AL536_21805 PF00905 Penicillin binding protein transpeptidase domain AL536_21830 PF00263 Bacterial type II and III secretion system protein AL536_21830 PF07660 Secretin and TonB N terminus short domain AL536_21830 PF11741 AMIN domain AL536_21830 PF03958 Bacterial type II/III secretion system short domain AL536_21835 PF01202 Shikimate kinase AL536_21840 PF01761 3-dehydroquinate synthase AL536_21850 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL536_21855 PF00834 Ribulose-phosphate 3 epimerase family AL536_21860 PF13419 Haloacid dehalogenase-like hydrolase AL536_21865 PF00579 tRNA synthetases class I (W and Y) AL536_21875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL536_21880 PF00117 Glutamine amidotransferase class-I AL536_21885 PF00202 Aminotransferase class-III AL536_21890 PF04958 Arginine N-succinyltransferase beta subunit AL536_21895 PF00171 Aldehyde dehydrogenase family AL536_21905 PF13545 Crp-like helix-turn-helix domain AL536_21905 PF00027 Cyclic nucleotide-binding domain AL536_21910 PF00485 Phosphoribulokinase / Uridine kinase family AL536_21915 PF06794 Uncharacterised protein family (UPF0270) AL536_21920 PF00561 alpha/beta hydrolase fold AL536_21930 PF00005 ABC transporter AL536_21930 PF12848 ABC transporter AL536_21935 PF02525 Flavodoxin-like fold AL536_21940 PF00999 Sodium/hydrogen exchanger family AL536_21940 PF02254 TrkA-N domain AL536_21945 PF09526 Probable metal-binding protein (DUF2387) AL536_21950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL536_21955 PF01112 Asparaginase AL536_21960 PF00709 Adenylosuccinate synthetase AL536_21965 PF08238 Sel1 repeat AL536_21970 PF00884 Sulfatase AL536_21970 PF11893 Domain of unknown function (DUF3413) AL536_21975 PF00575 S1 RNA binding domain AL536_21975 PF00773 RNB domain AL536_21975 PF08206 Ribonuclease B OB domain AL536_21975 PF08461 Ribonuclease R winged-helix domain AL536_21975 PF17876 Cold shock domain AL536_21980 PF00588 SpoU rRNA Methylase family AL536_21980 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL536_21985 PF00338 Ribosomal protein S10p/S20e AL536_21990 PF00297 Ribosomal protein L3 AL536_21995 PF00573 Ribosomal protein L4/L1 family AL536_22000 PF00276 Ribosomal protein L23 AL536_22005 PF00181 Ribosomal Proteins L2, RNA binding domain AL536_22005 PF03947 Ribosomal Proteins L2, C-terminal domain AL536_22010 PF00203 Ribosomal protein S19 AL536_22015 PF00237 Ribosomal protein L22p/L17e AL536_22020 PF00189 Ribosomal protein S3, C-terminal domain AL536_22020 PF07650 KH domain AL536_22025 PF00252 Ribosomal protein L16p/L10e AL536_22030 PF00831 Ribosomal L29 protein AL536_22035 PF00366 Ribosomal protein S17 AL536_22040 PF00238 Ribosomal protein L14p/L23e AL536_22045 PF00467 KOW motif AL536_22045 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL536_22050 PF00281 Ribosomal protein L5 AL536_22050 PF00673 ribosomal L5P family C-terminus AL536_22055 PF00253 Ribosomal protein S14p/S29e AL536_22060 PF00410 Ribosomal protein S8 AL536_22065 PF00347 Ribosomal protein L6 AL536_22070 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL536_22075 PF03719 Ribosomal protein S5, C-terminal domain AL536_22075 PF00333 Ribosomal protein S5, N-terminal domain AL536_22080 PF00327 Ribosomal protein L30p/L7e AL536_22090 PF00344 SecY translocase AL536_22095 PF00444 Ribosomal protein L36 AL536_22100 PF00416 Ribosomal protein S13/S18 AL536_22105 PF00411 Ribosomal protein S11 AL536_22110 PF01479 S4 domain AL536_22110 PF00163 Ribosomal protein S4/S9 N-terminal domain AL536_22115 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL536_22115 PF01000 RNA polymerase Rpb3/RpoA insert domain AL536_22115 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL536_22120 PF01196 Ribosomal protein L17 AL536_22130 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL536_22130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL536_22135 PF08525 Opacity-associated protein A N-terminal motif AL536_22135 PF04225 Opacity-associated protein A LysM-like domain AL536_22140 PF00892 EamA-like transporter family AL536_22145 PF13673 Acetyltransferase (GNAT) domain AL536_22150 PF00270 DEAD/DEAH box helicase AL536_22150 PF00271 Helicase conserved C-terminal domain AL536_22150 PF03880 DbpA RNA binding domain AL536_22160 PF00149 Calcineurin-like phosphoesterase AL536_22160 PF02872 5'-nucleotidase, C-terminal domain AL536_22165 PF14824 Sirohaem biosynthesis protein central AL536_22165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL536_22165 PF10414 Sirohaem synthase dimerisation region AL536_22170 PF01507 Phosphoadenosine phosphosulfate reductase family AL536_22175 PF00009 Elongation factor Tu GTP binding domain AL536_22180 PF02080 TrkA-C domain AL536_22180 PF03600 Citrate transporter AL536_22205 PF12704 MacB-like periplasmic core domain AL536_22205 PF02687 FtsX-like permease family AL536_22205 PF00005 ABC transporter AL536_22215 PF10795 Protein of unknown function (DUF2607) AL536_22220 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL536_22225 PF01625 Peptide methionine sulfoxide reductase AL536_22230 PF07244 Surface antigen variable number repeat AL536_22230 PF01103 Surface antigen AL536_22230 PF17243 POTRA domain TamA domain 1 AL536_22235 PF04357 TamB, inner membrane protein subunit of TAM complex AL536_22240 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AL536_22245 PF00719 Inorganic pyrophosphatase AL536_22250 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL536_22255 PF08245 Mur ligase middle domain AL536_22255 PF01225 Mur ligase family, catalytic domain AL536_22255 PF02875 Mur ligase family, glutamate ligase domain AL536_22260 PF02441 Flavoprotein AL536_22270 PF00528 Binding-protein-dependent transport system inner membrane component AL536_22275 PF00005 ABC transporter AL536_22280 PF04751 Protein of unknown function (DUF615) AL536_22285 PF01523 Putative modulator of DNA gyrase AL536_22290 PF00571 CBS domain AL536_22290 PF01769 Divalent cation transporter AL536_22290 PF03448 MgtE intracellular N domain AL536_22295 PF00381 PTS HPr component phosphorylation site AL536_22300 PF03668 P-loop ATPase protein family AL536_22305 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL536_22310 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL536_22315 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL536_22315 PF04963 Sigma-54 factor, core binding domain AL536_22315 PF04552 Sigma-54, DNA binding domain AL536_22320 PF00005 ABC transporter AL536_22320 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL536_22325 PF03968 OstA-like protein AL536_22340 PF00571 CBS domain AL536_22340 PF01380 SIS domain AL536_22345 PF01699 Sodium/calcium exchanger protein AL536_22350 PF00005 ABC transporter AL536_22355 PF02405 Permease MlaE AL536_22360 PF02470 MlaD protein AL536_22365 PF05494 MlaC protein AL536_22370 PF13466 STAS domain AL536_22375 PF01722 BolA-like protein AL536_22380 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL536_22395 PF00258 Flavodoxin AL536_22395 PF00301 Rubredoxin AL536_22395 PF00753 Metallo-beta-lactamase superfamily AL536_22455 PF03701 Uncharacterised protein family (UPF0181) AL536_22480 PF09905 DNA-binding protein VF530 AL536_22550 PF00589 Phage integrase family AL536_22550 PF02899 Phage integrase, N-terminal SAM-like domain AL536_22680 PF03692 Putative zinc- or iron-chelating domain AL536_22695 PF07694 5TMR of 5TMR-LYT AL536_22695 PF00990 Diguanylate cyclase, GGDEF domain AL536_22710 PF00444 Ribosomal protein L36 AL536_22775 PF00436 Single-strand binding protein family AL536_22810 PF01809 Putative membrane protein insertion efficiency factor