locus-tag class description AL475_00005 PF01568 Molydopterin dinucleotide binding domain AL475_00005 PF00384 Molybdopterin oxidoreductase AL475_00005 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL475_00010 PF13247 4Fe-4S dicluster domain AL475_00025 PF00909 Ammonium Transporter Family AL475_00030 PF02146 Sir2 family AL475_00035 PF13416 Bacterial extracellular solute-binding protein AL475_00040 PF13416 Bacterial extracellular solute-binding protein AL475_00045 PF00528 Binding-protein-dependent transport system inner membrane component AL475_00050 PF00528 Binding-protein-dependent transport system inner membrane component AL475_00055 PF00005 ABC transporter AL475_00055 PF08402 TOBE domain AL475_00075 PF01171 PP-loop family AL475_00080 PF00582 Universal stress protein family AL475_00085 PF00027 Cyclic nucleotide-binding domain AL475_00085 PF13545 Crp-like helix-turn-helix domain AL475_00100 PF00403 Heavy-metal-associated domain AL475_00110 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL475_00110 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL475_00125 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL475_00140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_00140 PF00512 His Kinase A (phospho-acceptor) domain AL475_00140 PF09308 LuxQ, periplasmic AL475_00140 PF00072 Response regulator receiver domain AL475_00145 PF01566 Natural resistance-associated macrophage protein AL475_00225 PF17414 MatP C-terminal ribbon-helix-helix domain AL475_00225 PF06303 MatP N-terminal domain AL475_00230 PF13654 AAA domain AL475_00230 PF05362 Lon protease (S16) C-terminal proteolytic domain AL475_00235 PF07977 FabA-like domain AL475_00240 PF04957 Ribosome modulation factor AL475_00260 PF01170 Putative RNA methylase family UPF0020 AL475_00260 PF10672 S-adenosylmethionine-dependent methyltransferase AL475_00260 PF02926 THUMP domain AL475_00265 PF07126 Cell-division protein ZapC AL475_00270 PF01180 Dihydroorotate dehydrogenase AL475_00275 PF05088 Bacterial NAD-glutamate dehydrogenase AL475_00285 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL475_00285 PF01433 Peptidase family M1 domain AL475_00285 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL475_00300 PF11818 C-terminal domain of tail specific protease (DUF3340) AL475_00300 PF03572 Peptidase family S41 AL475_00300 PF17804 Tail specific protease N-terminal domain AL475_00300 PF00595 PDZ domain AL475_00310 PF13185 GAF domain AL475_00315 PF00664 ABC transporter transmembrane region AL475_00315 PF00005 ABC transporter AL475_00320 PF04403 Paraquat-inducible protein A AL475_00325 PF02470 MlaD protein AL475_00330 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AL475_00330 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AL475_00330 PF01189 16S rRNA methyltransferase RsmB/F AL475_00335 PF17783 CvfB-like winged helix domain AL475_00335 PF13509 S1 domain AL475_00350 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL475_00350 PF02896 PEP-utilising enzyme, TIM barrel domain AL475_00350 PF00391 PEP-utilising enzyme, mobile domain AL475_00355 PF00793 DAHP synthetase I family AL475_00360 PF04461 Protein of unknown function (DUF520) AL475_00365 PF01641 SelR domain AL475_00375 PF01235 Sodium:alanine symporter family AL475_00400 PF16671 Actin cross-linking domain AL475_00400 PF04717 Type VI secretion system, phage-baseplate injector AL475_00405 PF05638 Type VI secretion system effector, Hcp AL475_00410 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL475_00420 PF00270 DEAD/DEAH box helicase AL475_00420 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL475_00420 PF00271 Helicase conserved C-terminal domain AL475_00420 PF04408 Helicase associated domain (HA2) AL475_00420 PF11898 Domain of unknown function (DUF3418) AL475_00425 PF02525 Flavodoxin-like fold AL475_00435 PF03264 NapC/NirT cytochrome c family, N-terminal region AL475_00460 PF00990 Diguanylate cyclase, GGDEF domain AL475_00470 PF00012 Hsp70 protein AL475_00475 PF00012 Hsp70 protein AL475_00480 PF00990 Diguanylate cyclase, GGDEF domain AL475_00480 PF05230 MASE2 domain AL475_00490 PF00990 Diguanylate cyclase, GGDEF domain AL475_00505 PF04399 Glutaredoxin 2, C terminal domain AL475_00505 PF13417 Glutathione S-transferase, N-terminal domain AL475_00515 PF07859 alpha/beta hydrolase fold AL475_00525 PF00072 Response regulator receiver domain AL475_00525 PF00990 Diguanylate cyclase, GGDEF domain AL475_00535 PF01568 Molydopterin dinucleotide binding domain AL475_00535 PF18364 Molybdopterin oxidoreductase N-terminal domain AL475_00535 PF00384 Molybdopterin oxidoreductase AL475_00540 PF03264 NapC/NirT cytochrome c family, N-terminal region AL475_00545 PF06508 Queuosine biosynthesis protein QueC AL475_00550 PF04055 Radical SAM superfamily AL475_00560 PF14824 Sirohaem biosynthesis protein central AL475_00560 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL475_00560 PF10414 Sirohaem synthase dimerisation region AL475_00565 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL475_00570 PF00528 Binding-protein-dependent transport system inner membrane component AL475_00575 PF00528 Binding-protein-dependent transport system inner membrane component AL475_00580 PF00005 ABC transporter AL475_00585 PF01027 Inhibitor of apoptosis-promoting Bax1 AL475_00590 PF04358 DsrC like protein AL475_00595 PF00708 Acylphosphatase AL475_00600 PF17785 PUA-like domain AL475_00600 PF10672 S-adenosylmethionine-dependent methyltransferase AL475_00605 PF06433 Methylamine dehydrogenase heavy chain (MADH) AL475_00615 PF00578 AhpC/TSA family AL475_00620 PF02975 Methylamine dehydrogenase, L chain AL475_00625 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL475_00625 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL475_00645 PF00141 Peroxidase AL475_00650 PF00512 His Kinase A (phospho-acceptor) domain AL475_00650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_00650 PF00672 HAMP domain AL475_00655 PF00486 Transcriptional regulatory protein, C terminal AL475_00655 PF00072 Response regulator receiver domain AL475_00660 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL475_00660 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL475_00670 PF05552 Conserved TM helix AL475_00670 PF00924 Mechanosensitive ion channel AL475_00675 PF01699 Sodium/calcium exchanger protein AL475_00690 PF08447 PAS fold AL475_00690 PF13426 PAS domain AL475_00690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_00705 PF00313 'Cold-shock' DNA-binding domain AL475_00750 PF00990 Diguanylate cyclase, GGDEF domain AL475_00750 PF00072 Response regulator receiver domain AL475_00760 PF11852 Domain of unknown function (DUF3372) AL475_00760 PF03714 Bacterial pullanase-associated domain AL475_00760 PF18494 Pullulanase Ins domain AL475_00760 PF17967 Pullulanase N2 domain AL475_00760 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL475_00765 PF00072 Response regulator receiver domain AL475_00765 PF01584 CheW-like domain AL475_00775 PF00072 Response regulator receiver domain AL475_00775 PF12431 Transcriptional regulator AL475_00780 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL475_00780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_00780 PF00989 PAS fold AL475_00780 PF17203 Single cache domain 3 AL475_00795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_00815 PF04204 Homoserine O-succinyltransferase AL475_00830 PF05971 RNA methyltransferase AL475_00835 PF01863 Protein of unknown function DUF45 AL475_00845 PF03466 LysR substrate binding domain AL475_00845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_00895 PF00005 ABC transporter AL475_00900 PF01032 FecCD transport family AL475_00905 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL475_00915 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AL475_00920 PF02654 Cobalamin-5-phosphate synthase AL475_00925 PF02277 Phosphoribosyltransferase AL475_00930 PF01613 Flavin reductase like domain AL475_00935 PF13460 NAD(P)H-binding AL475_00950 PF00929 Exonuclease AL475_00950 PF08411 Exonuclease C-terminal AL475_00955 PF03788 LrgA family AL475_00960 PF04172 LrgB-like family AL475_00965 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AL475_00965 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL475_00970 PF13188 PAS domain AL475_00970 PF00563 EAL domain AL475_00970 PF03707 Bacterial signalling protein N terminal repeat AL475_00970 PF00990 Diguanylate cyclase, GGDEF domain AL475_00990 PF02222 ATP-grasp domain AL475_00995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_00995 PF08447 PAS fold AL475_00995 PF13426 PAS domain AL475_01000 PF05724 Thiopurine S-methyltransferase (TPMT) AL475_01010 PF00216 Bacterial DNA-binding protein AL475_01015 PF03483 B3/4 domain AL475_01015 PF03484 tRNA synthetase B5 domain AL475_01015 PF03147 Ferredoxin-fold anticodon binding domain AL475_01015 PF01588 Putative tRNA binding domain AL475_01015 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL475_01020 PF01409 tRNA synthetases class II core domain (F) AL475_01020 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL475_01030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_01030 PF03466 LysR substrate binding domain AL475_01035 PF00072 Response regulator receiver domain AL475_01035 PF00990 Diguanylate cyclase, GGDEF domain AL475_01040 PF07995 Glucose / Sorbosone dehydrogenase AL475_01070 PF01066 CDP-alcohol phosphatidyltransferase AL475_01075 PF08459 UvrC Helix-hairpin-helix N-terminal AL475_01075 PF02151 UvrB/uvrC motif AL475_01075 PF01541 GIY-YIG catalytic domain AL475_01080 PF00196 Bacterial regulatory proteins, luxR family AL475_01080 PF00072 Response regulator receiver domain AL475_01085 PF03104 DNA polymerase family B, exonuclease domain AL475_01085 PF00136 DNA polymerase family B AL475_01090 PF13426 PAS domain AL475_01090 PF00563 EAL domain AL475_01090 PF00990 Diguanylate cyclase, GGDEF domain AL475_01100 PF09285 Elongation factor P, C-terminal AL475_01100 PF08207 Elongation factor P (EF-P) KOW-like domain AL475_01100 PF01132 Elongation factor P (EF-P) OB domain AL475_01105 PF04269 Protein of unknown function, DUF440 AL475_01115 PF07702 UTRA domain AL475_01115 PF00392 Bacterial regulatory proteins, gntR family AL475_01120 PF01979 Amidohydrolase family AL475_01125 PF00491 Arginase family AL475_01130 PF01175 Urocanase Rossmann-like domain AL475_01130 PF17392 Urocanase C-terminal domain AL475_01130 PF17391 Urocanase N-terminal domain AL475_01135 PF00221 Aromatic amino acid lyase AL475_01150 PF04191 Phospholipid methyltransferase AL475_01155 PF01565 FAD binding domain AL475_01155 PF02913 FAD linked oxidases, C-terminal domain AL475_01155 PF13183 4Fe-4S dicluster domain AL475_01170 PF13488 Glycine zipper AL475_01170 PF00691 OmpA family AL475_01190 PF01259 SAICAR synthetase AL475_01195 PF00202 Aminotransferase class-III AL475_01200 PF00171 Aldehyde dehydrogenase family AL475_01205 PF04371 Porphyromonas-type peptidyl-arginine deiminase AL475_01210 PF00795 Carbon-nitrogen hydrolase AL475_01215 PF01266 FAD dependent oxidoreductase AL475_01220 PF00171 Aldehyde dehydrogenase family AL475_01225 PF07883 Cupin domain AL475_01225 PF01381 Helix-turn-helix AL475_01230 PF07722 Peptidase C26 AL475_01235 PF00120 Glutamine synthetase, catalytic domain AL475_01240 PF03553 Na+/H+ antiporter family AL475_01245 PF13533 Biotin-lipoyl like AL475_01255 PF03466 LysR substrate binding domain AL475_01255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_01270 PF11898 Domain of unknown function (DUF3418) AL475_01270 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL475_01270 PF00271 Helicase conserved C-terminal domain AL475_01270 PF00270 DEAD/DEAH box helicase AL475_01270 PF04408 Helicase associated domain (HA2) AL475_01275 PF03949 Malic enzyme, NAD binding domain AL475_01275 PF00390 Malic enzyme, N-terminal domain AL475_01290 PF00144 Beta-lactamase AL475_01310 PF03466 LysR substrate binding domain AL475_01310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_01330 PF13344 Haloacid dehalogenase-like hydrolase AL475_01330 PF00293 NUDIX domain AL475_01340 PF00376 MerR family regulatory protein AL475_01340 PF09278 MerR, DNA binding AL475_01350 PF02698 DUF218 domain AL475_01360 PF01614 Bacterial transcriptional regulator AL475_01360 PF09339 IclR helix-turn-helix domain AL475_01365 PF09339 IclR helix-turn-helix domain AL475_01365 PF01614 Bacterial transcriptional regulator AL475_01370 PF00171 Aldehyde dehydrogenase family AL475_01375 PF00465 Iron-containing alcohol dehydrogenase AL475_01380 PF00266 Aminotransferase class-V AL475_01400 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_01405 PF00664 ABC transporter transmembrane region AL475_01405 PF00005 ABC transporter AL475_01410 PF00664 ABC transporter transmembrane region AL475_01410 PF00005 ABC transporter AL475_01425 PF00849 RNA pseudouridylate synthase AL475_01425 PF01479 S4 domain AL475_01430 PF01300 Telomere recombination AL475_01435 PF02811 PHP domain AL475_01445 PF04715 Anthranilate synthase component I, N terminal region AL475_01445 PF00425 chorismate binding enzyme AL475_01450 PF00117 Glutamine amidotransferase class-I AL475_01455 PF02885 Glycosyl transferase family, helical bundle domain AL475_01455 PF00591 Glycosyl transferase family, a/b domain AL475_01460 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL475_01460 PF00218 Indole-3-glycerol phosphate synthase AL475_01465 PF00291 Pyridoxal-phosphate dependent enzyme AL475_01475 PF00375 Sodium:dicarboxylate symporter family AL475_01485 PF04279 Intracellular septation protein A AL475_01490 PF03061 Thioesterase superfamily AL475_01495 PF03795 YCII-related domain AL475_01505 PF08267 Cobalamin-independent synthase, N-terminal domain AL475_01505 PF01717 Cobalamin-independent synthase, Catalytic domain AL475_01510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_01510 PF03466 LysR substrate binding domain AL475_01525 PF00675 Insulinase (Peptidase family M16) AL475_01525 PF05193 Peptidase M16 inactive domain AL475_01545 PF00043 Glutathione S-transferase, C-terminal domain AL475_01545 PF02798 Glutathione S-transferase, N-terminal domain AL475_01550 PF00043 Glutathione S-transferase, C-terminal domain AL475_01550 PF13417 Glutathione S-transferase, N-terminal domain AL475_01555 PF00563 EAL domain AL475_01555 PF00196 Bacterial regulatory proteins, luxR family AL475_01560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_01560 PF00672 HAMP domain AL475_01560 PF12729 Four helix bundle sensory module for signal transduction AL475_01575 PF01177 Asp/Glu/Hydantoin racemase AL475_01580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL475_01585 PF00512 His Kinase A (phospho-acceptor) domain AL475_01585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_01585 PF00989 PAS fold AL475_01585 PF00672 HAMP domain AL475_01590 PF00072 Response regulator receiver domain AL475_01590 PF00486 Transcriptional regulatory protein, C terminal AL475_01605 PF03358 NADPH-dependent FMN reductase AL475_01610 PF12848 ABC transporter AL475_01610 PF00005 ABC transporter AL475_01615 PF08497 Radical SAM N-terminal AL475_01615 PF11842 Domain of unknown function (DUF3362) AL475_01615 PF04055 Radical SAM superfamily AL475_01620 PF00266 Aminotransferase class-V AL475_01630 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL475_01630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_01630 PF00512 His Kinase A (phospho-acceptor) domain AL475_01645 PF04993 TfoX N-terminal domain AL475_01645 PF04994 TfoX C-terminal domain AL475_01655 PF03956 Lysine exporter LysO AL475_01665 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL475_01670 PF01380 SIS domain AL475_01670 PF01418 Helix-turn-helix domain, rpiR family AL475_01675 PF00465 Iron-containing alcohol dehydrogenase AL475_01675 PF00171 Aldehyde dehydrogenase family AL475_01680 PF00462 Glutaredoxin AL475_01685 PF02080 TrkA-C domain AL475_01685 PF06826 Predicted Permease Membrane Region AL475_01690 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL475_01690 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL475_01690 PF07055 Enoyl reductase FAD binding domain AL475_01695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL475_01695 PF02770 Acyl-CoA dehydrogenase, middle domain AL475_01695 PF09317 Domain of unknown function (DUF1974) AL475_01695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL475_01700 PF16295 Tetracyclin repressor-like, C-terminal domain AL475_01700 PF00440 Bacterial regulatory proteins, tetR family AL475_01715 PF00171 Aldehyde dehydrogenase family AL475_01725 PF06610 L-alanine exporter AL475_01730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_01730 PF00072 Response regulator receiver domain AL475_01730 PF09308 LuxQ, periplasmic AL475_01730 PF00512 His Kinase A (phospho-acceptor) domain AL475_01740 PF02445 Quinolinate synthetase A protein AL475_01745 PF13174 Tetratricopeptide repeat AL475_01745 PF16331 TolA binding protein trimerisation AL475_01750 PF00691 OmpA family AL475_01765 PF02472 Biopolymer transport protein ExbD/TolR AL475_01770 PF01618 MotA/TolQ/ExbB proton channel family AL475_01775 PF03061 Thioesterase superfamily AL475_01785 PF08173 Membrane bound YbgT-like protein AL475_01790 PF02322 Cytochrome bd terminal oxidase subunit II AL475_01795 PF01654 Cytochrome bd terminal oxidase subunit I AL475_01800 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL475_01800 PF05491 RuvB C-terminal winged helix domain AL475_01800 PF17864 RuvB AAA lid domain AL475_01805 PF01330 RuvA N terminal domain AL475_01805 PF07499 RuvA, C-terminal domain AL475_01810 PF02075 Crossover junction endodeoxyribonuclease RuvC AL475_01815 PF09190 DALR domain AL475_01815 PF01406 tRNA synthetases class I (C) catalytic domain AL475_01820 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL475_01825 PF00149 Calcineurin-like phosphoesterase AL475_01830 PF00563 EAL domain AL475_01830 PF08668 HDOD domain AL475_01835 PF02810 SEC-C motif AL475_01845 PF13609 Gram-negative porin AL475_01850 PF06733 DEAD_2 AL475_01850 PF13307 Helicase C-terminal domain AL475_01855 PF07445 Primosomal replication protein priC AL475_01860 PF10689 Protein of unknown function (DUF2496) AL475_01865 PF00672 HAMP domain AL475_01865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_01865 PF02743 Cache domain AL475_01870 PF03372 Endonuclease/Exonuclease/phosphatase family AL475_01875 PF00528 Binding-protein-dependent transport system inner membrane component AL475_01880 PF00528 Binding-protein-dependent transport system inner membrane component AL475_01885 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL475_01890 PF00005 ABC transporter AL475_01900 PF02901 Pyruvate formate lyase-like AL475_01900 PF01228 Glycine radical AL475_01910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_01910 PF00672 HAMP domain AL475_01915 PF04055 Radical SAM superfamily AL475_01935 PF06798 PrkA serine protein kinase C-terminal domain AL475_01935 PF08298 PrkA AAA domain AL475_01940 PF04285 Protein of unknown function (DUF444) AL475_01945 PF04293 SpoVR like protein AL475_01950 PF02348 Cytidylyltransferase AL475_01955 PF03966 Trm112p-like protein AL475_01960 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AL475_01965 PF00005 ABC transporter AL475_01965 PF00664 ABC transporter transmembrane region AL475_01970 PF00753 Metallo-beta-lactamase superfamily AL475_01970 PF03772 Competence protein AL475_01970 PF13567 Domain of unknown function (DUF4131) AL475_01980 PF12704 MacB-like periplasmic core domain AL475_01980 PF02687 FtsX-like permease family AL475_01985 PF00005 ABC transporter AL475_01990 PF02687 FtsX-like permease family AL475_01990 PF12704 MacB-like periplasmic core domain AL475_02000 PF03461 TRCF domain AL475_02000 PF00270 DEAD/DEAH box helicase AL475_02000 PF17757 UvrB interaction domain AL475_02000 PF02559 CarD-like/TRCF domain AL475_02000 PF00271 Helicase conserved C-terminal domain AL475_02010 PF13302 Acetyltransferase (GNAT) domain AL475_02015 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_02025 PF01636 Phosphotransferase enzyme family AL475_02030 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL475_02030 PF13036 Peptidoglycan-synthase activator LpoB AL475_02045 PF01230 HIT domain AL475_02050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_02050 PF00672 HAMP domain AL475_02060 PF07840 FadR C-terminal domain AL475_02060 PF00392 Bacterial regulatory proteins, gntR family AL475_02065 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AL475_02070 PF02600 Disulfide bond formation protein DsbB AL475_02075 PF09397 Ftsk gamma domain AL475_02075 PF17854 FtsK alpha domain AL475_02075 PF01580 FtsK/SpoIIIE family AL475_02075 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL475_02080 PF01037 Lrp/AsnC ligand binding domain AL475_02085 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL475_02085 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL475_02095 PF03466 LysR substrate binding domain AL475_02095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_02105 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AL475_02115 PF18073 Rubredoxin metal binding domain AL475_02120 PF06305 Lipopolysaccharide assembly protein A domain AL475_02130 PF00575 S1 RNA binding domain AL475_02135 PF02224 Cytidylate kinase AL475_02145 PF13145 PPIC-type PPIASE domain AL475_02150 PF00216 Bacterial DNA-binding protein AL475_02155 PF00004 ATPase family associated with various cellular activities (AAA) AL475_02155 PF05362 Lon protease (S16) C-terminal proteolytic domain AL475_02155 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL475_02160 PF06689 ClpX C4-type zinc finger AL475_02160 PF10431 C-terminal, D2-small domain, of ClpB protein AL475_02160 PF07724 AAA domain (Cdc48 subfamily) AL475_02165 PF00574 Clp protease AL475_02170 PF05697 Bacterial trigger factor protein (TF) AL475_02170 PF05698 Bacterial trigger factor protein (TF) C-terminus AL475_02170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL475_02180 PF00512 His Kinase A (phospho-acceptor) domain AL475_02180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_02185 PF00158 Sigma-54 interaction domain AL475_02185 PF00072 Response regulator receiver domain AL475_02185 PF02954 Bacterial regulatory protein, Fis family AL475_02190 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL475_02195 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL475_02200 PF03480 Bacterial extracellular solute-binding protein, family 7 AL475_02205 PF05922 Peptidase inhibitor I9 AL475_02205 PF00082 Subtilase family AL475_02210 PF01547 Bacterial extracellular solute-binding protein AL475_02215 PF00672 HAMP domain AL475_02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_02215 PF00512 His Kinase A (phospho-acceptor) domain AL475_02220 PF00072 Response regulator receiver domain AL475_02220 PF00486 Transcriptional regulatory protein, C terminal AL475_02225 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL475_02230 PF03313 Serine dehydratase alpha chain AL475_02230 PF03315 Serine dehydratase beta chain AL475_02240 PF00583 Acetyltransferase (GNAT) family AL475_02240 PF00795 Carbon-nitrogen hydrolase AL475_02250 PF00563 EAL domain AL475_02250 PF00990 Diguanylate cyclase, GGDEF domain AL475_02250 PF00498 FHA domain AL475_02270 PF00175 Oxidoreductase NAD-binding domain AL475_02270 PF00970 Oxidoreductase FAD-binding domain AL475_02295 PF00072 Response regulator receiver domain AL475_02295 PF00196 Bacterial regulatory proteins, luxR family AL475_02300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_02300 PF07730 Histidine kinase AL475_02300 PF05231 MASE1 AL475_02305 PF07690 Major Facilitator Superfamily AL475_02315 PF00528 Binding-protein-dependent transport system inner membrane component AL475_02320 PF00005 ABC transporter AL475_02320 PF08402 TOBE domain AL475_02400 PF01381 Helix-turn-helix AL475_02410 PF13657 HipA N-terminal domain AL475_02410 PF07804 HipA-like C-terminal domain AL475_02430 PF02386 Cation transport protein AL475_02435 PF02254 TrkA-N domain AL475_02435 PF02080 TrkA-C domain AL475_02440 PF02386 Cation transport protein AL475_02445 PF00072 Response regulator receiver domain AL475_02445 PF00486 Transcriptional regulatory protein, C terminal AL475_02450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_02450 PF13493 Domain of unknown function (DUF4118) AL475_02450 PF02702 Osmosensitive K+ channel His kinase sensor domain AL475_02450 PF00512 His Kinase A (phospho-acceptor) domain AL475_02455 PF05552 Conserved TM helix AL475_02455 PF00924 Mechanosensitive ion channel AL475_02460 PF02424 ApbE family AL475_02465 PF01699 Sodium/calcium exchanger protein AL475_02470 PF02673 Bacitracin resistance protein BacA AL475_02475 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AL475_02480 PF01810 LysE type translocator AL475_02490 PF01810 LysE type translocator AL475_02505 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL475_02505 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL475_02510 PF07662 Na+ dependent nucleoside transporter C-terminus AL475_02510 PF01773 Na+ dependent nucleoside transporter N-terminus AL475_02510 PF07670 Nucleoside recognition AL475_02515 PF03466 LysR substrate binding domain AL475_02515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_02520 PF13406 Transglycosylase SLT domain AL475_02525 PF05166 YcgL domain AL475_02535 PF05209 Septum formation inhibitor MinC, N-terminal domain AL475_02535 PF03775 Septum formation inhibitor MinC, C-terminal domain AL475_02540 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL475_02545 PF03776 Septum formation topological specificity factor MinE AL475_02555 PF00570 HRDC domain AL475_02555 PF01612 3'-5' exonuclease AL475_02560 PF13193 AMP-binding enzyme C-terminal domain AL475_02560 PF00501 AMP-binding enzyme AL475_02580 PF00814 Glycoprotease family AL475_02585 PF13307 Helicase C-terminal domain AL475_02585 PF04851 Type III restriction enzyme, res subunit AL475_02595 PF01842 ACT domain AL475_02595 PF00551 Formyl transferase AL475_02600 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL475_02600 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_02605 PF01343 Peptidase family S49 AL475_02610 PF00710 Asparaginase, N-terminal AL475_02610 PF17763 Glutaminase/Asparaginase C-terminal domain AL475_02615 PF07023 Protein of unknown function (DUF1315) AL475_02625 PF01641 SelR domain AL475_02630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL475_02630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL475_02635 PF01263 Aldose 1-epimerase AL475_02640 PF13847 Methyltransferase domain AL475_02660 PF03692 Putative zinc- or iron-chelating domain AL475_02665 PF03692 Putative zinc- or iron-chelating domain AL475_02670 PF00230 Major intrinsic protein AL475_02675 PF13662 Toprim domain AL475_02675 PF02132 RecR protein AL475_02680 PF02575 YbaB/EbfC DNA-binding family AL475_02685 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AL475_02685 PF12170 DNA polymerase III tau subunit V interacting with alpha AL475_02685 PF12169 DNA polymerase III subunits gamma and tau domain III AL475_02690 PF00156 Phosphoribosyl transferase domain AL475_02695 PF04304 Protein of unknown function (DUF454) AL475_02705 PF00072 Response regulator receiver domain AL475_02710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_02710 PF03466 LysR substrate binding domain AL475_02715 PF00881 Nitroreductase family AL475_02720 PF00378 Enoyl-CoA hydratase/isomerase AL475_02720 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL475_02720 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL475_02725 PF02803 Thiolase, C-terminal domain AL475_02725 PF00108 Thiolase, N-terminal domain AL475_02730 PF04542 Sigma-70 region 2 AL475_02730 PF08281 Sigma-70, region 4 AL475_02740 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL475_02745 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL475_02750 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL475_02760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_02760 PF08447 PAS fold AL475_02760 PF13426 PAS domain AL475_02765 PF12557 Cob(I)alamin adenosyltransferase N terminal AL475_02765 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AL475_02770 PF05170 AsmA family AL475_02775 PF00485 Phosphoribulokinase / Uridine kinase family AL475_02780 PF10609 NUBPL iron-transfer P-loop NTPase AL475_02785 PF01588 Putative tRNA binding domain AL475_02785 PF09334 tRNA synthetases class I (M) AL475_02795 PF01048 Phosphorylase superfamily AL475_02800 PF00403 Heavy-metal-associated domain AL475_02805 PF00571 CBS domain AL475_02805 PF00478 IMP dehydrogenase / GMP reductase domain AL475_02810 PF08448 PAS fold AL475_02810 PF00990 Diguanylate cyclase, GGDEF domain AL475_02815 PF02391 MoaE protein AL475_02820 PF02597 ThiS family AL475_02825 PF01967 MoaC family AL475_02830 PF00994 Probable molybdopterin binding domain AL475_02835 PF04055 Radical SAM superfamily AL475_02835 PF06463 Molybdenum Cofactor Synthesis C AL475_02840 PF01933 Uncharacterised protein family UPF0052 AL475_02845 PF01627 Hpt domain AL475_02850 PF00158 Sigma-54 interaction domain AL475_02850 PF00072 Response regulator receiver domain AL475_02850 PF02954 Bacterial regulatory protein, Fis family AL475_02855 PF12344 Ultra-violet resistance protein B AL475_02855 PF04851 Type III restriction enzyme, res subunit AL475_02855 PF02151 UvrB/uvrC motif AL475_02855 PF00271 Helicase conserved C-terminal domain AL475_02855 PF17757 UvrB interaction domain AL475_02865 PF02508 Rnf-Nqr subunit, membrane protein AL475_02870 PF04060 Putative Fe-S cluster AL475_02880 PF03116 NQR2, RnfD, RnfE family AL475_02885 PF04205 FMN-binding domain AL475_02890 PF02508 Rnf-Nqr subunit, membrane protein AL475_02895 PF00633 Helix-hairpin-helix motif AL475_02895 PF10576 Iron-sulfur binding domain of endonuclease III AL475_02895 PF00730 HhH-GPD superfamily base excision DNA repair protein AL475_02900 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL475_02905 PF10952 Protein of unknown function (DUF2753) AL475_02910 PF00691 OmpA family AL475_02910 PF18393 MotY N-terminal domain AL475_02915 PF00929 Exonuclease AL475_02920 PF03553 Na+/H+ antiporter family AL475_02920 PF13726 Na+-H+ antiporter family AL475_02925 PF00156 Phosphoribosyl transferase domain AL475_02930 PF02674 Colicin V production protein AL475_02935 PF05036 Sporulation related domain AL475_02940 PF08245 Mur ligase middle domain AL475_02940 PF02875 Mur ligase family, glutamate ligase domain AL475_02945 PF17848 Acetyl-coA carboxylase zinc finger domain AL475_02945 PF01039 Carboxyl transferase domain AL475_02950 PF01416 tRNA pseudouridine synthase AL475_02960 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL475_02960 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL475_02965 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL475_02965 PF00367 phosphotransferase system, EIIB AL475_02965 PF02378 Phosphotransferase system, EIIC AL475_02970 PF01979 Amidohydrolase family AL475_02975 PF00480 ROK family AL475_02975 PF01047 MarR family AL475_02980 PF00999 Sodium/hydrogen exchanger family AL475_02980 PF02254 TrkA-N domain AL475_02985 PF13537 Glutamine amidotransferase domain AL475_02985 PF00733 Asparagine synthase AL475_02990 PF02357 Transcription termination factor nusG AL475_02995 PF00854 POT family AL475_03000 PF00762 Ferrochelatase AL475_03005 PF05191 Adenylate kinase, active site lid AL475_03010 PF00183 Hsp90 protein AL475_03010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_03015 PF00486 Transcriptional regulatory protein, C terminal AL475_03020 PF17323 Trans-membrane regulatory protein ToxS AL475_03030 PF12850 Calcineurin-like phosphoesterase superfamily domain AL475_03045 PF07556 Protein of unknown function (DUF1538) AL475_03050 PF07556 Protein of unknown function (DUF1538) AL475_03055 PF01370 NAD dependent epimerase/dehydratase family AL475_03055 PF08338 Domain of unknown function (DUF1731) AL475_03060 PF00106 short chain dehydrogenase AL475_03070 PF00085 Thioredoxin AL475_03075 PF16200 C-terminal region of band_7 AL475_03075 PF01145 SPFH domain / Band 7 family AL475_03085 PF13411 MerR HTH family regulatory protein AL475_03095 PF13609 Gram-negative porin AL475_03100 PF12826 Helix-hairpin-helix motif AL475_03100 PF03120 NAD-dependent DNA ligase OB-fold domain AL475_03100 PF00533 BRCA1 C Terminus (BRCT) domain AL475_03100 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AL475_03100 PF01653 NAD-dependent DNA ligase adenylation domain AL475_03105 PF04354 ZipA, C-terminal FtsZ-binding domain AL475_03115 PF00291 Pyridoxal-phosphate dependent enzyme AL475_03125 PF00381 PTS HPr component phosphorylation site AL475_03130 PF00391 PEP-utilising enzyme, mobile domain AL475_03130 PF05524 PEP-utilising enzyme, N-terminal AL475_03130 PF02896 PEP-utilising enzyme, TIM barrel domain AL475_03135 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL475_03140 PF01494 FAD binding domain AL475_03145 PF01938 TRAM domain AL475_03145 PF00919 Uncharacterized protein family UPF0004 AL475_03145 PF04055 Radical SAM superfamily AL475_03150 PF02562 PhoH-like protein AL475_03155 PF02130 Uncharacterized protein family UPF0054 AL475_03160 PF00571 CBS domain AL475_03160 PF03471 Transporter associated domain AL475_03165 PF00795 Carbon-nitrogen hydrolase AL475_03170 PF07295 Zinc-ribbon containing domain AL475_03175 PF08264 Anticodon-binding domain of tRNA AL475_03175 PF13603 Leucyl-tRNA synthetase, Domain 2 AL475_03175 PF00133 tRNA synthetases class I (I, L, M and V) AL475_03180 PF04390 Lipopolysaccharide-assembly AL475_03185 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AL475_03185 PF06144 DNA polymerase III, delta subunit AL475_03195 PF02590 Predicted SPOUT methyltransferase AL475_03200 PF00905 Penicillin binding protein transpeptidase domain AL475_03200 PF03717 Penicillin-binding Protein dimerisation domain AL475_03205 PF01098 Cell cycle protein AL475_03210 PF03330 Lytic transglycolase AL475_03210 PF05036 Sporulation related domain AL475_03215 PF07943 Penicillin-binding protein 5, C-terminal domain AL475_03215 PF00768 D-alanyl-D-alanine carboxypeptidase AL475_03220 PF04359 Protein of unknown function (DUF493) AL475_03225 PF03099 Biotin/lipoate A/B protein ligase family AL475_03230 PF04055 Radical SAM superfamily AL475_03230 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL475_03240 PF00464 Serine hydroxymethyltransferase AL475_03250 PF00873 AcrB/AcrD/AcrF family AL475_03255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_03285 PF00356 Bacterial regulatory proteins, lacI family AL475_03300 PF09383 NIL domain AL475_03300 PF00005 ABC transporter AL475_03305 PF00528 Binding-protein-dependent transport system inner membrane component AL475_03310 PF03180 NLPA lipoprotein AL475_03315 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AL475_03320 PF07348 Syd protein (SUKH-2) AL475_03325 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL475_03325 PF14489 QueF-like protein AL475_03335 PF00990 Diguanylate cyclase, GGDEF domain AL475_03335 PF00072 Response regulator receiver domain AL475_03340 PF03641 Possible lysine decarboxylase AL475_03340 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AL475_03340 PF11892 Domain of unknown function (DUF3412) AL475_03345 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL475_03345 PF01367 5'-3' exonuclease, C-terminal SAM fold AL475_03350 PF18125 RlmM ferredoxin-like domain AL475_03350 PF01728 FtsJ-like methyltransferase AL475_03355 PF04241 Protein of unknown function (DUF423) AL475_03365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_03365 PF03466 LysR substrate binding domain AL475_03370 PF02568 Thiamine biosynthesis protein (ThiI) AL475_03370 PF02926 THUMP domain AL475_03375 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL475_03375 PF00691 OmpA family AL475_03380 PF01618 MotA/TolQ/ExbB proton channel family AL475_03385 PF02609 Exonuclease VII small subunit AL475_03390 PF00348 Polyprenyl synthetase AL475_03395 PF02779 Transketolase, pyrimidine binding domain AL475_03395 PF02780 Transketolase, C-terminal domain AL475_03395 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL475_03400 PF00849 RNA pseudouridylate synthase AL475_03405 PF04287 tRNA pseudouridine synthase C AL475_03430 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AL475_03435 PF03806 AbgT putative transporter family AL475_03440 PF00444 Ribosomal protein L36 AL475_03445 PF01197 Ribosomal protein L31 AL475_03450 PF01980 tRNA-methyltransferase O AL475_03450 PF18389 TrmO C-terminal domain AL475_03455 PF03129 Anticodon binding domain AL475_03455 PF04073 Aminoacyl-tRNA editing domain AL475_03455 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL475_03465 PF06786 Uncharacterised protein family (UPF0253) AL475_03475 PF02769 AIR synthase related protein, C-terminal domain AL475_03475 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL475_03475 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL475_03480 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL475_03480 PF01464 Transglycosylase SLT domain AL475_03485 PF14437 MafB19-like deaminase AL475_03490 PF03466 LysR substrate binding domain AL475_03490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_03495 PF08240 Alcohol dehydrogenase GroES-like domain AL475_03495 PF00107 Zinc-binding dehydrogenase AL475_03500 PF00756 Putative esterase AL475_03505 PF03806 AbgT putative transporter family AL475_03525 PF12019 Type II transport protein GspH AL475_03525 PF07963 Prokaryotic N-terminal methylation motif AL475_03535 PF00684 DnaJ central domain AL475_03535 PF00226 DnaJ domain AL475_03535 PF01556 DnaJ C terminal domain AL475_03540 PF00012 Hsp70 protein AL475_03545 PF00375 Sodium:dicarboxylate symporter family AL475_03550 PF01025 GrpE AL475_03555 PF01513 ATP-NAD kinase AL475_03560 PF02463 RecF/RecN/SMC N terminal domain AL475_03565 PF04355 SmpA / OmlA family AL475_03570 PF03658 RnfH family Ubiquitin AL475_03575 PF03364 Polyketide cyclase / dehydrase and lipid transport AL475_03580 PF01668 SmpB protein AL475_03590 PF00589 Phage integrase family AL475_03590 PF13356 Arm DNA-binding domain AL475_03605 PF01555 DNA methylase AL475_03605 PF18273 Type III R-M EcoP15I C-terminal domain AL475_03610 PF00176 SNF2 family N-terminal domain AL475_03610 PF00271 Helicase conserved C-terminal domain AL475_03625 PF04002 RadC-like JAB domain AL475_03660 PF07510 Protein of unknown function (DUF1524) AL475_03695 PF00075 RNase H AL475_03735 PF04851 Type III restriction enzyme, res subunit AL475_03735 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AL475_03735 PF08463 EcoEI R protein C-terminal AL475_03735 PF00271 Helicase conserved C-terminal domain AL475_03765 PF03466 LysR substrate binding domain AL475_03765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_03770 PF01266 FAD dependent oxidoreductase AL475_03775 PF01235 Sodium:alanine symporter family AL475_03780 PF03466 LysR substrate binding domain AL475_03780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_03785 PF07687 Peptidase dimerisation domain AL475_03785 PF01546 Peptidase family M20/M25/M40 AL475_03790 PF07690 Major Facilitator Superfamily AL475_03795 PF01758 Sodium Bile acid symporter family AL475_03800 PF01184 GPR1/FUN34/yaaH family AL475_03805 PF00704 Glycosyl hydrolases family 18 AL475_03805 PF06483 Chitinase C AL475_03820 PF00580 UvrD/REP helicase N-terminal domain AL475_03820 PF13361 UvrD-like helicase C-terminal domain AL475_03855 PF18821 Large polyvalent protein-associated domain 7 AL475_03855 PF03432 Relaxase/Mobilisation nuclease domain AL475_03880 PF01119 DNA mismatch repair protein, C-terminal domain AL475_03880 PF08676 MutL C terminal dimerisation domain AL475_03885 PF00589 Phage integrase family AL475_03885 PF13356 Arm DNA-binding domain AL475_03890 PF02540 NAD synthase AL475_03890 PF00958 GMP synthase C terminal domain AL475_03890 PF00117 Glutamine amidotransferase class-I AL475_03895 PF00571 CBS domain AL475_03895 PF00478 IMP dehydrogenase / GMP reductase domain AL475_03900 PF13742 OB-fold nucleic acid binding domain AL475_03900 PF02601 Exonuclease VII, large subunit AL475_03915 PF01926 50S ribosome-binding GTPase AL475_03915 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL475_03920 PF13360 PQQ-like domain AL475_03925 PF09976 Tetratricopeptide repeat-like domain AL475_03930 PF03129 Anticodon binding domain AL475_03930 PF13393 Histidyl-tRNA synthetase AL475_03935 PF04551 GcpE protein AL475_03940 PF13464 Domain of unknown function (DUF4115) AL475_03945 PF04055 Radical SAM superfamily AL475_03950 PF00334 Nucleoside diphosphate kinase AL475_03955 PF12404 Peptidase AL475_03955 PF00883 Cytosol aminopeptidase family, catalytic domain AL475_03960 PF04384 Iron-sulphur cluster assembly AL475_03965 PF00111 2Fe-2S iron-sulfur cluster binding domain AL475_03970 PF00012 Hsp70 protein AL475_03975 PF07743 HSCB C-terminal oligomerisation domain AL475_03975 PF00226 DnaJ domain AL475_03980 PF01521 Iron-sulphur cluster biosynthesis AL475_03985 PF01592 NifU-like N terminal domain AL475_03990 PF00266 Aminotransferase class-V AL475_03995 PF02082 Transcriptional regulator AL475_04000 PF00588 SpoU rRNA Methylase family AL475_04005 PF00459 Inositol monophosphatase family AL475_04010 PF00857 Isochorismatase family AL475_04015 PF02355 Protein export membrane protein AL475_04015 PF07549 SecD/SecF GG Motif AL475_04020 PF07549 SecD/SecF GG Motif AL475_04020 PF13721 SecD export protein N-terminal TM region AL475_04020 PF02355 Protein export membrane protein AL475_04025 PF02699 Preprotein translocase subunit AL475_04030 PF01702 Queuine tRNA-ribosyltransferase AL475_04035 PF02547 Queuosine biosynthesis protein AL475_04040 PF00571 CBS domain AL475_04045 PF00463 Isocitrate lyase family AL475_04050 PF01274 Malate synthase AL475_04055 PF03466 LysR substrate binding domain AL475_04055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_04060 PF00578 AhpC/TSA family AL475_04060 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL475_04065 PF03932 CutC family AL475_04070 PF03976 Polyphosphate kinase 2 (PPK2) AL475_04075 PF01895 PhoU domain AL475_04080 PF00005 ABC transporter AL475_04085 PF00528 Binding-protein-dependent transport system inner membrane component AL475_04090 PF00528 Binding-protein-dependent transport system inner membrane component AL475_04100 PF17941 Polyphosphate kinase C-terminal domain 1 AL475_04100 PF13090 Polyphosphate kinase C-terminal domain 2 AL475_04100 PF02503 Polyphosphate kinase middle domain AL475_04100 PF13089 Polyphosphate kinase N-terminal domain AL475_04105 PF02541 Ppx/GppA phosphatase family AL475_04110 PF12849 PBP superfamily domain AL475_04115 PF11808 Phosphate regulon sensor protein PhoR AL475_04115 PF00512 His Kinase A (phospho-acceptor) domain AL475_04115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_04115 PF00989 PAS fold AL475_04120 PF00486 Transcriptional regulatory protein, C terminal AL475_04120 PF00072 Response regulator receiver domain AL475_04125 PF04381 Putative exonuclease, RdgC AL475_04135 PF12838 4Fe-4S dicluster domain AL475_04140 PF07690 Major Facilitator Superfamily AL475_04150 PF04545 Sigma-70, region 4 AL475_04150 PF04542 Sigma-70 region 2 AL475_04160 PF03502 Nucleoside-specific channel-forming protein, Tsx AL475_04165 PF02558 Ketopantoate reductase PanE/ApbA AL475_04165 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL475_04170 PF01965 DJ-1/PfpI family AL475_04175 PF00266 Aminotransferase class-V AL475_04185 PF02657 Fe-S metabolism associated domain AL475_04190 PF00899 ThiF family AL475_04195 PF03562 MltA specific insert domain AL475_04195 PF06725 3D domain AL475_04205 PF00696 Amino acid kinase family AL475_04205 PF00583 Acetyltransferase (GNAT) family AL475_04215 PF13538 UvrD-like helicase C-terminal domain AL475_04220 PF00580 UvrD/REP helicase N-terminal domain AL475_04220 PF12705 PD-(D/E)XK nuclease superfamily AL475_04220 PF13361 UvrD-like helicase C-terminal domain AL475_04225 PF17946 RecC C-terminal domain AL475_04235 PF03466 LysR substrate binding domain AL475_04235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_04240 PF07130 YebG protein AL475_04245 PF14602 Hexapeptide repeat of succinyl-transferase AL475_04245 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AL475_04250 PF00962 Adenosine/AMP deaminase AL475_04260 PF00583 Acetyltransferase (GNAT) family AL475_04265 PF08443 RimK-like ATP-grasp domain AL475_04265 PF18030 RimK PreATP-grasp domain AL475_04265 PF02080 TrkA-C domain AL475_04270 PF01544 CorA-like Mg2+ transporter protein AL475_04280 PF01588 Putative tRNA binding domain AL475_04285 PF01263 Aldose 1-epimerase AL475_04295 PF02417 Chromate transporter AL475_04300 PF11849 Domain of unknown function (DUF3369) AL475_04320 PF00437 Type II/IV secretion system protein AL475_04350 PF00263 Bacterial type II and III secretion system protein AL475_04350 PF04972 BON domain AL475_04350 PF13629 Pilus formation protein N terminal region AL475_04375 PF02311 AraC-like ligand binding domain AL475_04375 PF12833 Helix-turn-helix domain AL475_04380 PF00501 AMP-binding enzyme AL475_04390 PF03466 LysR substrate binding domain AL475_04390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_04400 PF03466 LysR substrate binding domain AL475_04400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_04405 PF03764 Elongation factor G, domain IV AL475_04405 PF03144 Elongation factor Tu domain 2 AL475_04405 PF14492 Elongation Factor G, domain II AL475_04405 PF00009 Elongation factor Tu GTP binding domain AL475_04405 PF00679 Elongation factor G C-terminus AL475_04410 PF18073 Rubredoxin metal binding domain AL475_04420 PF18429 Domain of unknown function (DUF5609) AL475_04430 PF01048 Phosphorylase superfamily AL475_04435 PF01676 Metalloenzyme superfamily AL475_04440 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AL475_04440 PF02885 Glycosyl transferase family, helical bundle domain AL475_04440 PF00591 Glycosyl transferase family, a/b domain AL475_04445 PF01791 DeoC/LacD family aldolase AL475_04455 PF01773 Na+ dependent nucleoside transporter N-terminus AL475_04455 PF07670 Nucleoside recognition AL475_04455 PF07662 Na+ dependent nucleoside transporter C-terminus AL475_04480 PF01026 TatD related DNase AL475_04490 PF01235 Sodium:alanine symporter family AL475_04505 PF03167 Uracil DNA glycosylase superfamily AL475_04510 PF01261 Xylose isomerase-like TIM barrel AL475_04515 PF01228 Glycine radical AL475_04520 PF14821 Threonine synthase N terminus AL475_04520 PF00291 Pyridoxal-phosphate dependent enzyme AL475_04525 PF00288 GHMP kinases N terminal domain AL475_04525 PF08544 GHMP kinases C terminal AL475_04530 PF13840 ACT domain AL475_04530 PF03447 Homoserine dehydrogenase, NAD binding domain AL475_04530 PF00742 Homoserine dehydrogenase AL475_04530 PF01842 ACT domain AL475_04530 PF00696 Amino acid kinase family AL475_04545 PF03737 Aldolase/RraA AL475_04560 PF00486 Transcriptional regulatory protein, C terminal AL475_04560 PF00072 Response regulator receiver domain AL475_04570 PF00512 His Kinase A (phospho-acceptor) domain AL475_04570 PF01627 Hpt domain AL475_04570 PF00989 PAS fold AL475_04570 PF00072 Response regulator receiver domain AL475_04570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_04570 PF18415 Histidine kinase receptor ArcB trans-membrane domain AL475_04575 PF01590 GAF domain AL475_04575 PF00563 EAL domain AL475_04575 PF00990 Diguanylate cyclase, GGDEF domain AL475_04575 PF00360 Phytochrome region AL475_04580 PF04055 Radical SAM superfamily AL475_04580 PF16199 Radical_SAM C-terminal domain AL475_04585 PF00310 Glutamine amidotransferases class-II AL475_04585 PF04898 Glutamate synthase central domain AL475_04585 PF01645 Conserved region in glutamate synthase AL475_04585 PF01493 GXGXG motif AL475_04590 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL475_04590 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_04595 PF00310 Glutamine amidotransferases class-II AL475_04595 PF01645 Conserved region in glutamate synthase AL475_04595 PF01493 GXGXG motif AL475_04595 PF04898 Glutamate synthase central domain AL475_04600 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_04600 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL475_04620 PF01497 Periplasmic binding protein AL475_04625 PF03458 UPF0126 domain AL475_04645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_04645 PF03466 LysR substrate binding domain AL475_04650 PF01925 Sulfite exporter TauE/SafE AL475_04655 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL475_04655 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL475_04655 PF02142 MGS-like domain AL475_04660 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL475_04660 PF00117 Glutamine amidotransferase class-I AL475_04670 PF00293 NUDIX domain AL475_04675 PF07517 SecA DEAD-like domain AL475_04675 PF07516 SecA Wing and Scaffold domain AL475_04675 PF01043 SecA preprotein cross-linking domain AL475_04675 PF02810 SEC-C motif AL475_04685 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL475_04690 PF00091 Tubulin/FtsZ family, GTPase domain AL475_04690 PF12327 FtsZ family, C-terminal domain AL475_04695 PF02491 SHS2 domain inserted in FTSA AL475_04700 PF08478 POTRA domain, FtsQ-type AL475_04700 PF03799 Cell division protein FtsQ AL475_04705 PF08245 Mur ligase middle domain AL475_04705 PF02875 Mur ligase family, glutamate ligase domain AL475_04705 PF01225 Mur ligase family, catalytic domain AL475_04710 PF04101 Glycosyltransferase family 28 C-terminal domain AL475_04710 PF03033 Glycosyltransferase family 28 N-terminal domain AL475_04715 PF01098 Cell cycle protein AL475_04720 PF08245 Mur ligase middle domain AL475_04720 PF02875 Mur ligase family, glutamate ligase domain AL475_04725 PF00953 Glycosyl transferase family 4 AL475_04725 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AL475_04730 PF01225 Mur ligase family, catalytic domain AL475_04730 PF02875 Mur ligase family, glutamate ligase domain AL475_04730 PF08245 Mur ligase middle domain AL475_04735 PF08245 Mur ligase middle domain AL475_04735 PF02875 Mur ligase family, glutamate ligase domain AL475_04735 PF01225 Mur ligase family, catalytic domain AL475_04740 PF00905 Penicillin binding protein transpeptidase domain AL475_04740 PF03717 Penicillin-binding Protein dimerisation domain AL475_04745 PF04999 Cell division protein FtsL AL475_04750 PF01795 MraW methylase family AL475_04760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL475_04765 PF04348 LppC putative lipoprotein AL475_04770 PF02021 Uncharacterised protein family UPF0102 AL475_04775 PF13580 SIS domain AL475_04780 PF04972 BON domain AL475_04785 PF04386 Stringent starvation protein B AL475_04790 PF02798 Glutathione S-transferase, N-terminal domain AL475_04790 PF00043 Glutathione S-transferase, C-terminal domain AL475_04795 PF02167 Cytochrome C1 family AL475_04800 PF00032 Cytochrome b(C-terminal)/b6/petD AL475_04800 PF00033 Cytochrome b/b6/petB AL475_04805 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL475_04805 PF00355 Rieske [2Fe-2S] domain AL475_04810 PF00380 Ribosomal protein S9/S16 AL475_04815 PF00572 Ribosomal protein L13 AL475_04825 PF03969 AFG1-like ATPase AL475_04830 PF06295 Protein of unknown function (DUF1043) AL475_04835 PF00595 PDZ domain AL475_04835 PF13180 PDZ domain AL475_04840 PF13180 PDZ domain AL475_04845 PF01245 Ribosomal protein L19 AL475_04855 PF05239 PRC-barrel domain AL475_04855 PF01782 RimM N-terminal domain AL475_04860 PF00886 Ribosomal protein S16 AL475_04865 PF02881 SRP54-type protein, helical bundle domain AL475_04865 PF02978 Signal peptide binding domain AL475_04865 PF00448 SRP54-type protein, GTPase domain AL475_04870 PF01578 Cytochrome C assembly protein AL475_04875 PF00571 CBS domain AL475_04875 PF03471 Transporter associated domain AL475_04875 PF01595 Cyclin M transmembrane N-terminal domain AL475_04880 PF02664 S-Ribosylhomocysteinase (LuxS) AL475_04890 PF04262 Glutamate-cysteine ligase AL475_04895 PF05193 Peptidase M16 inactive domain AL475_04895 PF00675 Insulinase (Peptidase family M16) AL475_04900 PF09335 SNARE associated Golgi protein AL475_04905 PF08240 Alcohol dehydrogenase GroES-like domain AL475_04905 PF00107 Zinc-binding dehydrogenase AL475_04910 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL475_04915 PF00364 Biotin-requiring enzyme AL475_04915 PF02436 Conserved carboxylase domain AL475_04915 PF00682 HMGL-like AL475_04920 PF04277 Oxaloacetate decarboxylase, gamma chain AL475_04965 PF02599 Global regulator protein family AL475_04970 PF00696 Amino acid kinase family AL475_04970 PF13840 ACT domain AL475_04970 PF01842 ACT domain AL475_04975 PF01411 tRNA synthetases class II (A) AL475_04975 PF02272 DHHA1 domain AL475_04975 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL475_04980 PF02631 RecX family AL475_04985 PF00154 recA bacterial DNA recombination protein AL475_04990 PF02464 Competence-damaged protein AL475_04995 PF05188 MutS domain II AL475_04995 PF05190 MutS family domain IV AL475_04995 PF05192 MutS domain III AL475_04995 PF00488 MutS domain V AL475_04995 PF01624 MutS domain I AL475_05000 PF04542 Sigma-70 region 2 AL475_05000 PF04545 Sigma-70, region 4 AL475_05000 PF00140 Sigma-70 factor, region 1.2 AL475_05000 PF04539 Sigma-70 region 3 AL475_05005 PF01551 Peptidase family M23 AL475_05005 PF01476 LysM domain AL475_05015 PF01975 Survival protein SurE AL475_05020 PF01142 tRNA pseudouridine synthase D (TruD) AL475_05025 PF02542 YgbB family AL475_05030 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL475_05035 PF04977 Septum formation initiator AL475_05040 PF02673 Bacitracin resistance protein BacA AL475_05045 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL475_05050 PF02152 Dihydroneopterin aldolase AL475_05055 PF02660 Glycerol-3-phosphate acyltransferase AL475_05060 PF00561 alpha/beta hydrolase fold AL475_05065 PF00814 Glycoprotease family AL475_05070 PF01165 Ribosomal protein S21 AL475_05075 PF09424 Yqey-like protein AL475_05080 PF01807 CHC2 zinc finger AL475_05080 PF08275 DNA primase catalytic core, N-terminal domain AL475_05080 PF10410 DnaB-helicase binding domain of primase AL475_05080 PF08278 DNA primase DnaG DnaB-binding AL475_05085 PF04542 Sigma-70 region 2 AL475_05085 PF04546 Sigma-70, non-essential region AL475_05085 PF03979 Sigma-70 factor, region 1.1 AL475_05085 PF04539 Sigma-70 region 3 AL475_05085 PF00140 Sigma-70 factor, region 1.2 AL475_05085 PF04545 Sigma-70, region 4 AL475_05095 PF00589 Phage integrase family AL475_05095 PF13356 Arm DNA-binding domain AL475_05115 PF00563 EAL domain AL475_05115 PF01590 GAF domain AL475_05115 PF00990 Diguanylate cyclase, GGDEF domain AL475_05115 PF00360 Phytochrome region AL475_05145 PF17874 MalT-like TPR region AL475_05145 PF00196 Bacterial regulatory proteins, luxR family AL475_05150 PF00990 Diguanylate cyclase, GGDEF domain AL475_05160 PF04002 RadC-like JAB domain AL475_05205 PF02806 Alpha amylase, C-terminal all-beta domain AL475_05205 PF00128 Alpha amylase, catalytic domain AL475_05215 PF00924 Mechanosensitive ion channel AL475_05215 PF05552 Conserved TM helix AL475_05220 PF01699 Sodium/calcium exchanger protein AL475_05225 PF02673 Bacitracin resistance protein BacA AL475_05255 PF00075 RNase H AL475_05310 PF03448 MgtE intracellular N domain AL475_05310 PF01769 Divalent cation transporter AL475_05310 PF00571 CBS domain AL475_05330 PF03480 Bacterial extracellular solute-binding protein, family 7 AL475_05335 PF01380 SIS domain AL475_05340 PF00455 DeoR C terminal sensor domain AL475_05340 PF08220 DeoR-like helix-turn-helix domain AL475_05345 PF02887 Pyruvate kinase, alpha/beta domain AL475_05345 PF00224 Pyruvate kinase, barrel domain AL475_05355 PF17158 Membrane-associated sensor, integral membrane domain AL475_05355 PF00990 Diguanylate cyclase, GGDEF domain AL475_05365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_05365 PF03466 LysR substrate binding domain AL475_05370 PF01810 LysE type translocator AL475_05380 PF05552 Conserved TM helix AL475_05380 PF00924 Mechanosensitive ion channel AL475_05385 PF01116 Fructose-bisphosphate aldolase class-II AL475_05390 PF00162 Phosphoglycerate kinase AL475_05395 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL475_05395 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL475_05400 PF07715 TonB-dependent Receptor Plug Domain AL475_05400 PF00593 TonB dependent receptor AL475_05405 PF03466 LysR substrate binding domain AL475_05405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_05410 PF02779 Transketolase, pyrimidine binding domain AL475_05410 PF02780 Transketolase, C-terminal domain AL475_05410 PF00456 Transketolase, thiamine diphosphate binding domain AL475_05415 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL475_05415 PF02772 S-adenosylmethionine synthetase, central domain AL475_05415 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL475_05425 PF17283 SprT-like zinc ribbon domain AL475_05425 PF10263 SprT-like family AL475_05430 PF04231 Endonuclease I AL475_05435 PF04452 RNA methyltransferase AL475_05440 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL475_05440 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL475_05445 PF02622 Uncharacterized ACR, COG1678 AL475_05450 PF03652 Holliday junction resolvase AL475_05455 PF00437 Type II/IV secretion system protein AL475_05460 PF00437 Type II/IV secretion system protein AL475_05465 PF01168 Alanine racemase, N-terminal domain AL475_05470 PF03807 NADP oxidoreductase coenzyme F420-dependent AL475_05470 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL475_05475 PF02325 YGGT family AL475_05480 PF02594 Uncharacterised ACR, YggU family COG1872 AL475_05490 PF01725 Ham1 family AL475_05495 PF04055 Radical SAM superfamily AL475_05495 PF06969 HemN C-terminal domain AL475_05500 PF00730 HhH-GPD superfamily base excision DNA repair protein AL475_05505 PF04960 Glutaminase AL475_05510 PF02390 Putative methyltransferase AL475_05515 PF00730 HhH-GPD superfamily base excision DNA repair protein AL475_05515 PF14815 NUDIX domain AL475_05515 PF00633 Helix-hairpin-helix motif AL475_05515 PF10576 Iron-sulfur binding domain of endonuclease III AL475_05520 PF04362 Bacterial Fe(2+) trafficking AL475_05525 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL475_05525 PF01464 Transglycosylase SLT domain AL475_05550 PF08447 PAS fold AL475_05550 PF13426 PAS domain AL475_05550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_05580 PF00226 DnaJ domain AL475_05580 PF05099 Tellurite resistance protein TerB AL475_05585 PF03968 OstA-like protein AL475_05585 PF04453 LPS transport system D AL475_05590 PF09312 SurA N-terminal domain AL475_05595 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL475_05600 PF00398 Ribosomal RNA adenine dimethylase AL475_05605 PF04379 ApaG domain AL475_05610 PF00149 Calcineurin-like phosphoesterase AL475_05615 PF00186 Dihydrofolate reductase AL475_05620 PF12821 Threonine/Serine exporter, ThrE AL475_05620 PF06738 Putative threonine/serine exporter AL475_05625 PF06738 Putative threonine/serine exporter AL475_05630 PF01926 50S ribosome-binding GTPase AL475_05630 PF01018 GTP1/OBG AL475_05635 PF01016 Ribosomal L27 protein AL475_05640 PF00829 Ribosomal prokaryotic L21 protein AL475_05645 PF00348 Polyprenyl synthetase AL475_05650 PF13520 Amino acid permease AL475_05655 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL475_05655 PF00056 lactate/malate dehydrogenase, NAD binding domain AL475_05675 PF00582 Universal stress protein family AL475_05690 PF06877 Regulator of ribonuclease activity B AL475_05695 PF01523 Putative modulator of DNA gyrase AL475_05700 PF00795 Carbon-nitrogen hydrolase AL475_05705 PF13116 Protein of unknown function AL475_05705 PF13502 AsmA-like C-terminal region AL475_05710 PF00575 S1 RNA binding domain AL475_05710 PF10150 Ribonuclease E/G family AL475_05715 PF02545 Maf-like protein AL475_05720 PF04093 rod shape-determining protein MreD AL475_05725 PF04085 rod shape-determining protein MreC AL475_05760 PF07963 Prokaryotic N-terminal methylation motif AL475_05760 PF00114 Pilin (bacterial filament) AL475_05765 PF07963 Prokaryotic N-terminal methylation motif AL475_05765 PF00114 Pilin (bacterial filament) AL475_05775 PF00482 Type II secretion system (T2SS), protein F AL475_05780 PF00437 Type II/IV secretion system protein AL475_05780 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL475_05790 PF01471 Putative peptidoglycan binding domain AL475_05790 PF13401 AAA domain AL475_05795 PF00263 Bacterial type II and III secretion system protein AL475_05795 PF03958 Bacterial type II/III secretion system short domain AL475_05815 PF00563 EAL domain AL475_05815 PF00990 Diguanylate cyclase, GGDEF domain AL475_05815 PF17157 Gammaproteobacterial periplasmic sensor domain AL475_05820 PF00436 Single-strand binding protein family AL475_05825 PF00196 Bacterial regulatory proteins, luxR family AL475_05830 PF00483 Nucleotidyl transferase AL475_05835 PF00005 ABC transporter AL475_05835 PF17760 UvrA interaction domain AL475_05835 PF17755 UvrA DNA-binding domain AL475_05845 PF00266 Aminotransferase class-V AL475_05850 PF00696 Amino acid kinase family AL475_05850 PF01842 ACT domain AL475_05855 PF02310 B12 binding domain AL475_05855 PF02574 Homocysteine S-methyltransferase AL475_05855 PF00809 Pterin binding enzyme AL475_05855 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL475_05855 PF02607 B12 binding domain AL475_05860 PF00999 Sodium/hydrogen exchanger family AL475_05935 PF01507 Phosphoadenosine phosphosulfate reductase family AL475_05940 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL475_05940 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL475_05945 PF00667 FAD binding domain AL475_05945 PF00258 Flavodoxin AL475_05945 PF00175 Oxidoreductase NAD-binding domain AL475_05965 PF01207 Dihydrouridine synthase (Dus) AL475_05970 PF01475 Ferric uptake regulator family AL475_05980 PF00342 Phosphoglucose isomerase AL475_05985 PF01894 Uncharacterised protein family UPF0047 AL475_05990 PF00842 Alanine racemase, C-terminal domain AL475_05990 PF01168 Alanine racemase, N-terminal domain AL475_05995 PF03796 DnaB-like helicase C terminal domain AL475_05995 PF00772 DnaB-like helicase N terminal domain AL475_06005 PF03948 Ribosomal protein L9, C-terminal domain AL475_06005 PF01281 Ribosomal protein L9, N-terminal domain AL475_06010 PF01084 Ribosomal protein S18 AL475_06015 PF00436 Single-strand binding protein family AL475_06020 PF01250 Ribosomal protein S6 AL475_06025 PF00210 Ferritin-like domain AL475_06030 PF04324 BFD-like [2Fe-2S] binding domain AL475_06035 PF00009 Elongation factor Tu GTP binding domain AL475_06035 PF03144 Elongation factor Tu domain 2 AL475_06035 PF03143 Elongation factor Tu C-terminal domain AL475_06040 PF00679 Elongation factor G C-terminus AL475_06040 PF14492 Elongation Factor G, domain II AL475_06040 PF03764 Elongation factor G, domain IV AL475_06040 PF00009 Elongation factor Tu GTP binding domain AL475_06040 PF03144 Elongation factor Tu domain 2 AL475_06045 PF00177 Ribosomal protein S7p/S5e AL475_06050 PF00164 Ribosomal protein S12/S23 AL475_06055 PF04077 DsrH like protein AL475_06060 PF02635 DsrE/DsrF-like family AL475_06065 PF02635 DsrE/DsrF-like family AL475_06070 PF08348 YheO-like PAS domain AL475_06070 PF13309 HTH domain AL475_06075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL475_06075 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL475_06085 PF04102 SlyX AL475_06090 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AL475_06095 PF01145 SPFH domain / Band 7 family AL475_06100 PF01145 SPFH domain / Band 7 family AL475_06100 PF12221 Bacterial membrane protein N terminal AL475_06105 PF01926 50S ribosome-binding GTPase AL475_06105 PF13167 GTP-binding GTPase N-terminal AL475_06105 PF16360 GTP-binding GTPase Middle Region AL475_06110 PF17209 Hfq protein AL475_06120 PF08676 MutL C terminal dimerisation domain AL475_06120 PF01119 DNA mismatch repair protein, C-terminal domain AL475_06125 PF01520 N-acetylmuramoyl-L-alanine amidase AL475_06130 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL475_06135 PF08331 Domain of unknown function (DUF1730) AL475_06180 PF00929 Exonuclease AL475_06185 PF03193 RsgA GTPase AL475_06190 PF02666 Phosphatidylserine decarboxylase AL475_06195 PF02080 TrkA-C domain AL475_06195 PF03600 Citrate transporter AL475_06200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_06200 PF00672 HAMP domain AL475_06210 PF01676 Metalloenzyme superfamily AL475_06210 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AL475_06215 PF01551 Peptidase family M23 AL475_06225 PF00440 Bacterial regulatory proteins, tetR family AL475_06225 PF08360 QacR-like protein, C-terminal region AL475_06230 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL475_06235 PF09297 NADH pyrophosphatase zinc ribbon domain AL475_06235 PF00293 NUDIX domain AL475_06240 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AL475_06245 PF04998 RNA polymerase Rpb1, domain 5 AL475_06245 PF04997 RNA polymerase Rpb1, domain 1 AL475_06245 PF00623 RNA polymerase Rpb1, domain 2 AL475_06245 PF04983 RNA polymerase Rpb1, domain 3 AL475_06245 PF05000 RNA polymerase Rpb1, domain 4 AL475_06250 PF04560 RNA polymerase Rpb2, domain 7 AL475_06250 PF04563 RNA polymerase beta subunit AL475_06250 PF04561 RNA polymerase Rpb2, domain 2 AL475_06250 PF04565 RNA polymerase Rpb2, domain 3 AL475_06250 PF10385 RNA polymerase beta subunit external 1 domain AL475_06250 PF00562 RNA polymerase Rpb2, domain 6 AL475_06255 PF00542 Ribosomal protein L7/L12 C-terminal domain AL475_06255 PF16320 Ribosomal protein L7/L12 dimerisation domain AL475_06260 PF00466 Ribosomal protein L10 AL475_06265 PF00687 Ribosomal protein L1p/L10e family AL475_06270 PF00298 Ribosomal protein L11, RNA binding domain AL475_06270 PF03946 Ribosomal protein L11, N-terminal domain AL475_06275 PF02357 Transcription termination factor nusG AL475_06275 PF00467 KOW motif AL475_06280 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL475_06290 PF03143 Elongation factor Tu C-terminal domain AL475_06290 PF00009 Elongation factor Tu GTP binding domain AL475_06290 PF03144 Elongation factor Tu domain 2 AL475_06315 PF00485 Phosphoribulokinase / Uridine kinase family AL475_06320 PF02237 Biotin protein ligase C terminal domain AL475_06320 PF08279 HTH domain AL475_06320 PF03099 Biotin/lipoate A/B protein ligase family AL475_06325 PF01565 FAD binding domain AL475_06325 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL475_06335 PF13091 PLD-like domain AL475_06390 PF00175 Oxidoreductase NAD-binding domain AL475_06395 PF00970 Oxidoreductase FAD-binding domain AL475_06395 PF00111 2Fe-2S iron-sulfur cluster binding domain AL475_06395 PF00175 Oxidoreductase NAD-binding domain AL475_06400 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL475_06410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL475_06410 PF07498 Rho termination factor, N-terminal domain AL475_06410 PF07497 Rho termination factor, RNA-binding domain AL475_06415 PF00085 Thioredoxin AL475_06420 PF00270 DEAD/DEAH box helicase AL475_06420 PF00271 Helicase conserved C-terminal domain AL475_06425 PF02541 Ppx/GppA phosphatase family AL475_06430 PF00072 Response regulator receiver domain AL475_06430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_06430 PF00512 His Kinase A (phospho-acceptor) domain AL475_06430 PF01627 Hpt domain AL475_06430 PF00672 HAMP domain AL475_06435 PF12832 MFS_1 like family AL475_06450 PF00501 AMP-binding enzyme AL475_06450 PF16177 Acetyl-coenzyme A synthetase N-terminus AL475_06450 PF13193 AMP-binding enzyme C-terminal domain AL475_06455 PF01220 Dehydroquinase class II AL475_06460 PF00364 Biotin-requiring enzyme AL475_06465 PF02785 Biotin carboxylase C-terminal domain AL475_06465 PF00289 Biotin carboxylase, N-terminal domain AL475_06465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL475_06475 PF01207 Dihydrouridine synthase (Dus) AL475_06480 PF02954 Bacterial regulatory protein, Fis family AL475_06485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_06485 PF00672 HAMP domain AL475_06485 PF17200 Single Cache domain 2 AL475_06490 PF13411 MerR HTH family regulatory protein AL475_06500 PF01808 AICARFT/IMPCHase bienzyme AL475_06500 PF02142 MGS-like domain AL475_06505 PF02843 Phosphoribosylglycinamide synthetase, C domain AL475_06505 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL475_06505 PF02844 Phosphoribosylglycinamide synthetase, N domain AL475_06515 PF00216 Bacterial DNA-binding protein AL475_06520 PF01595 Cyclin M transmembrane N-terminal domain AL475_06520 PF00571 CBS domain AL475_06525 PF00924 Mechanosensitive ion channel AL475_06530 PF04222 Protein of unknown function (DUF416) AL475_06535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL475_06540 PF03167 Uracil DNA glycosylase superfamily AL475_06545 PF00753 Metallo-beta-lactamase superfamily AL475_06545 PF10996 Beta-Casp domain AL475_06545 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AL475_06550 PF02719 Polysaccharide biosynthesis protein AL475_06555 PF02397 Bacterial sugar transferase AL475_06560 PF01370 NAD dependent epimerase/dehydratase family AL475_06575 PF00535 Glycosyl transferase family 2 AL475_06605 PF02350 UDP-N-acetylglucosamine 2-epimerase AL475_06615 PF08485 Polysaccharide biosynthesis protein C-terminal AL475_06615 PF02719 Polysaccharide biosynthesis protein AL475_06620 PF00534 Glycosyl transferases group 1 AL475_06650 PF01370 NAD dependent epimerase/dehydratase family AL475_06655 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL475_06655 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL475_06655 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL475_06660 PF03279 Bacterial lipid A biosynthesis acyltransferase AL475_06665 PF04932 O-Antigen ligase AL475_06670 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL475_06675 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL475_06680 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL475_06685 PF00534 Glycosyl transferases group 1 AL475_06695 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL475_06700 PF00535 Glycosyl transferase family 2 AL475_06705 PF00534 Glycosyl transferases group 1 AL475_06705 PF13439 Glycosyltransferase Family 4 AL475_06710 PF13439 Glycosyltransferase Family 4 AL475_06710 PF00534 Glycosyl transferases group 1 AL475_06715 PF01467 Cytidylyltransferase-like AL475_06725 PF01370 NAD dependent epimerase/dehydratase family AL475_06730 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL475_06730 PF06827 Zinc finger found in FPG and IleRS AL475_06730 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL475_06740 PF00471 Ribosomal protein L33 AL475_06750 PF04002 RadC-like JAB domain AL475_06755 PF17200 Single Cache domain 2 AL475_06755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_06755 PF00672 HAMP domain AL475_06760 PF02441 Flavoprotein AL475_06760 PF04127 DNA / pantothenate metabolism flavoprotein AL475_06765 PF00440 Bacterial regulatory proteins, tetR family AL475_06770 PF03279 Bacterial lipid A biosynthesis acyltransferase AL475_06775 PF00156 Phosphoribosyl transferase domain AL475_06780 PF01138 3' exoribonuclease family, domain 1 AL475_06780 PF03725 3' exoribonuclease family, domain 2 AL475_06785 PF03755 YicC-like family, N-terminal region AL475_06785 PF08340 Domain of unknown function (DUF1732) AL475_06790 PF03350 Uncharacterized protein family, UPF0114 AL475_06795 PF07715 TonB-dependent Receptor Plug Domain AL475_06795 PF00593 TonB dependent receptor AL475_06800 PF01032 FecCD transport family AL475_06805 PF01497 Periplasmic binding protein AL475_06810 PF00005 ABC transporter AL475_06815 PF00664 ABC transporter transmembrane region AL475_06815 PF00005 ABC transporter AL475_06830 PF00271 Helicase conserved C-terminal domain AL475_06830 PF00570 HRDC domain AL475_06830 PF16124 RecQ zinc-binding AL475_06830 PF00270 DEAD/DEAH box helicase AL475_06830 PF09382 RQC domain AL475_06835 PF00892 EamA-like transporter family AL475_06845 PF01810 LysE type translocator AL475_06855 PF13361 UvrD-like helicase C-terminal domain AL475_06855 PF00580 UvrD/REP helicase N-terminal domain AL475_06865 PF05114 Protein of unknown function (DUF692) AL475_06885 PF01432 Peptidase family M3 AL475_06890 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL475_06895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL475_06895 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_06900 PF01047 MarR family AL475_06910 PF00529 HlyD membrane-fusion protein of T1SS AL475_06910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_06915 PF00873 AcrB/AcrD/AcrF family AL475_06925 PF12911 N-terminal TM domain of oligopeptide transport permease C AL475_06925 PF00528 Binding-protein-dependent transport system inner membrane component AL475_06935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL475_06940 PF00005 ABC transporter AL475_06940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL475_06970 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL475_06975 PF13361 UvrD-like helicase C-terminal domain AL475_06975 PF00580 UvrD/REP helicase N-terminal domain AL475_06980 PF00440 Bacterial regulatory proteins, tetR family AL475_06980 PF16295 Tetracyclin repressor-like, C-terminal domain AL475_06985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_06990 PF00873 AcrB/AcrD/AcrF family AL475_06995 PF04380 Membrane fusogenic activity AL475_07000 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL475_07000 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL475_07005 PF03466 LysR substrate binding domain AL475_07005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_07055 PF00132 Bacterial transferase hexapeptide (six repeats) AL475_07060 PF07369 Protein of unknown function (DUF1488) AL475_07065 PF08501 Shikimate dehydrogenase substrate binding domain AL475_07065 PF01488 Shikimate / quinate 5-dehydrogenase AL475_07065 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL475_07070 PF01218 Coproporphyrinogen III oxidase AL475_07075 PF01300 Telomere recombination AL475_07080 PF00731 AIR carboxylase AL475_07085 PF02222 ATP-grasp domain AL475_07085 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL475_07090 PF01396 Topoisomerase DNA binding C4 zinc finger AL475_07095 PF04361 Protein of unknown function (DUF494) AL475_07100 PF02481 DNA recombination-mediator protein A AL475_07100 PF17782 DprA winged helix domain AL475_07105 PF01476 LysM domain AL475_07110 PF01327 Polypeptide deformylase AL475_07115 PF02911 Formyl transferase, C-terminal domain AL475_07115 PF00551 Formyl transferase AL475_07120 PF01189 16S rRNA methyltransferase RsmB/F AL475_07120 PF01029 NusB family AL475_07125 PF02080 TrkA-C domain AL475_07125 PF02254 TrkA-N domain AL475_07130 PF02386 Cation transport protein AL475_07140 PF03006 Haemolysin-III related AL475_07145 PF07070 SpoOM protein AL475_07155 PF06288 Protein of unknown function (DUF1040) AL475_07160 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL475_07160 PF12801 4Fe-4S binding domain AL475_07160 PF13746 4Fe-4S dicluster domain AL475_07165 PF01636 Phosphotransferase enzyme family AL475_07170 PF01323 DSBA-like thioredoxin domain AL475_07175 PF01553 Acyltransferase AL475_07180 PF13335 Magnesium chelatase, subunit ChlI C-terminal AL475_07180 PF01078 Magnesium chelatase, subunit ChlI AL475_07185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL475_07185 PF00205 Thiamine pyrophosphate enzyme, central domain AL475_07185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL475_07195 PF01063 Amino-transferase class IV AL475_07200 PF00920 Dehydratase family AL475_07205 PF00291 Pyridoxal-phosphate dependent enzyme AL475_07205 PF00585 C-terminal regulatory domain of Threonine dehydratase AL475_07210 PF00107 Zinc-binding dehydrogenase AL475_07210 PF08240 Alcohol dehydrogenase GroES-like domain AL475_07215 PF03466 LysR substrate binding domain AL475_07215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_07225 PF01206 Sulfurtransferase TusA AL475_07235 PF01169 Uncharacterized protein family UPF0016 AL475_07240 PF02091 Glycyl-tRNA synthetase alpha subunit AL475_07245 PF02092 Glycyl-tRNA synthetase beta subunit AL475_07245 PF05746 DALR anticodon binding domain AL475_07250 PF00155 Aminotransferase class I and II AL475_07255 PF00011 Hsp20/alpha crystallin family AL475_07260 PF00204 DNA gyrase B AL475_07260 PF18053 DNA gyrase B subunit insert domain AL475_07260 PF01751 Toprim domain AL475_07260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_07260 PF00986 DNA gyrase B subunit, carboxyl terminus AL475_07265 PF02463 RecF/RecN/SMC N terminal domain AL475_07270 PF02768 DNA polymerase III beta subunit, C-terminal domain AL475_07270 PF02767 DNA polymerase III beta subunit, central domain AL475_07270 PF00712 DNA polymerase III beta subunit, N-terminal domain AL475_07275 PF08299 Bacterial dnaA protein helix-turn-helix AL475_07275 PF00308 Bacterial dnaA protein AL475_07275 PF11638 DnaA N-terminal domain AL475_07280 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL475_07285 PF00528 Binding-protein-dependent transport system inner membrane component AL475_07290 PF00005 ABC transporter AL475_07295 PF00468 Ribosomal protein L34 AL475_07300 PF00825 Ribonuclease P AL475_07305 PF01809 Putative membrane protein insertion efficiency factor AL475_07310 PF02096 60Kd inner membrane protein AL475_07310 PF14849 YidC periplasmic domain AL475_07315 PF01926 50S ribosome-binding GTPase AL475_07315 PF10396 GTP-binding protein TrmE N-terminus AL475_07315 PF12631 MnmE helical domain AL475_07320 PF00258 Flavodoxin AL475_07325 PF13932 GidA associated domain AL475_07325 PF01134 Glucose inhibited division protein A AL475_07330 PF02527 rRNA small subunit methyltransferase G AL475_07335 PF13614 AAA domain AL475_07340 PF02195 ParB-like nuclease domain AL475_07340 PF17762 HTH domain found in ParB protein AL475_07345 PF03899 ATP synthase I chain AL475_07350 PF00119 ATP synthase A chain AL475_07355 PF00137 ATP synthase subunit C AL475_07360 PF00430 ATP synthase B/B' CF(0) AL475_07365 PF00213 ATP synthase delta (OSCP) subunit AL475_07370 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL475_07370 PF00306 ATP synthase alpha/beta chain, C terminal domain AL475_07370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL475_07375 PF00231 ATP synthase AL475_07380 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL475_07380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL475_07385 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL475_07385 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL475_07390 PF00132 Bacterial transferase hexapeptide (six repeats) AL475_07390 PF14602 Hexapeptide repeat of succinyl-transferase AL475_07390 PF12804 MobA-like NTP transferase domain AL475_07395 PF00528 Binding-protein-dependent transport system inner membrane component AL475_07400 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL475_07405 PF07690 Major Facilitator Superfamily AL475_07410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_07410 PF03466 LysR substrate binding domain AL475_07415 PF02803 Thiolase, C-terminal domain AL475_07415 PF00108 Thiolase, N-terminal domain AL475_07420 PF00378 Enoyl-CoA hydratase/isomerase AL475_07420 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL475_07420 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL475_07425 PF09186 Domain of unknown function (DUF1949) AL475_07425 PF01205 Uncharacterized protein family UPF0029 AL475_07430 PF02386 Cation transport protein AL475_07435 PF12724 Flavodoxin domain AL475_07485 PF07732 Multicopper oxidase AL475_07485 PF00394 Multicopper oxidase AL475_07485 PF07731 Multicopper oxidase AL475_07490 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL475_07495 PF01964 Radical SAM ThiC family AL475_07495 PF13667 ThiC-associated domain AL475_07500 PF02581 Thiamine monophosphate synthase AL475_07505 PF00899 ThiF family AL475_07520 PF06968 Biotin and Thiamin Synthesis associated domain AL475_07520 PF04055 Radical SAM superfamily AL475_07525 PF00005 ABC transporter AL475_07525 PF00571 CBS domain AL475_07530 PF00528 Binding-protein-dependent transport system inner membrane component AL475_07535 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL475_07540 PF00732 GMC oxidoreductase AL475_07540 PF05199 GMC oxidoreductase AL475_07555 PF01321 Creatinase/Prolidase N-terminal domain AL475_07555 PF00557 Metallopeptidase family M24 AL475_07555 PF00557 Metallopeptidase family M24 AL475_07555 PF01321 Creatinase/Prolidase N-terminal domain AL475_07560 PF03466 LysR substrate binding domain AL475_07560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_07565 PF07690 Major Facilitator Superfamily AL475_07575 PF01037 Lrp/AsnC ligand binding domain AL475_07580 PF08448 PAS fold AL475_07580 PF00563 EAL domain AL475_07580 PF00990 Diguanylate cyclase, GGDEF domain AL475_07585 PF04445 Putative SAM-dependent methyltransferase AL475_07595 PF00892 EamA-like transporter family AL475_07600 PF00582 Universal stress protein family AL475_07605 PF00210 Ferritin-like domain AL475_07610 PF10625 Universal stress protein B (UspB) AL475_07620 PF02653 Branched-chain amino acid transport system / permease component AL475_07625 PF00005 ABC transporter AL475_07630 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL475_07635 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL475_07635 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL475_07640 PF00596 Class II Aldolase and Adducin N-terminal domain AL475_07645 PF02610 L-arabinose isomerase AL475_07645 PF11762 L-arabinose isomerase C-terminal domain AL475_07655 PF12833 Helix-turn-helix domain AL475_07655 PF02311 AraC-like ligand binding domain AL475_07670 PF02646 RmuC family AL475_07675 PF01209 ubiE/COQ5 methyltransferase family AL475_07680 PF02036 SCP-2 sterol transfer family AL475_07685 PF03109 ABC1 family AL475_07695 PF02416 mttA/Hcf106 family AL475_07700 PF00902 Sec-independent protein translocase protein (TatC) AL475_07705 PF01026 TatD related DNase AL475_07710 PF00490 Delta-aminolevulinic acid dehydratase AL475_07715 PF00583 Acetyltransferase (GNAT) family AL475_07720 PF01612 3'-5' exonuclease AL475_07720 PF00476 DNA polymerase family A AL475_07720 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL475_07720 PF01367 5'-3' exonuclease, C-terminal SAM fold AL475_07725 PF01926 50S ribosome-binding GTPase AL475_07730 PF00034 Cytochrome c AL475_07745 PF04220 Der GTPase activator (YihI) AL475_07750 PF10675 Protein of unknown function (DUF2489) AL475_07755 PF04055 Radical SAM superfamily AL475_07755 PF06969 HemN C-terminal domain AL475_07760 PF07719 Tetratricopeptide repeat AL475_07760 PF07219 HemY protein N-terminus AL475_07765 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AL475_07770 PF02602 Uroporphyrinogen-III synthase HemD AL475_07775 PF03900 Porphobilinogen deaminase, C-terminal domain AL475_07775 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL475_07780 PF01295 Adenylate cyclase, class-I AL475_07780 PF12633 Adenylate cyclase NT domain AL475_07785 PF01491 Frataxin-like domain AL475_07795 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL475_07795 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL475_07800 PF01678 Diaminopimelate epimerase AL475_07805 PF04340 Protein of unknown function, DUF484 AL475_07810 PF02899 Phage integrase, N-terminal SAM-like domain AL475_07810 PF00589 Phage integrase family AL475_07815 PF13419 Haloacid dehalogenase-like hydrolase AL475_07820 PF00990 Diguanylate cyclase, GGDEF domain AL475_07820 PF10442 FIST C domain AL475_07820 PF08495 FIST N domain AL475_07820 PF00563 EAL domain AL475_07845 PF12146 Serine aminopeptidase, S33 AL475_07850 PF01810 LysE type translocator AL475_07855 PF00563 EAL domain AL475_07855 PF08668 HDOD domain AL475_07860 PF01022 Bacterial regulatory protein, arsR family AL475_07865 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL475_07865 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL475_07880 PF00210 Ferritin-like domain AL475_07915 PF01914 MarC family integral membrane protein AL475_07930 PF02881 SRP54-type protein, helical bundle domain AL475_07930 PF00448 SRP54-type protein, GTPase domain AL475_07935 PF00005 ABC transporter AL475_07940 PF18075 FtsX extracellular domain AL475_07945 PF00140 Sigma-70 factor, region 1.2 AL475_07945 PF04542 Sigma-70 region 2 AL475_07945 PF04545 Sigma-70, region 4 AL475_07950 PF00581 Rhodanese-like domain AL475_07955 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL475_07955 PF01694 Rhomboid family AL475_07960 PF03748 Flagellar basal body-associated protein FliL AL475_07965 PF04345 Chorismate lyase AL475_07970 PF01040 UbiA prenyltransferase family AL475_07975 PF01553 Acyltransferase AL475_07980 PF01219 Prokaryotic diacylglycerol kinase AL475_07985 PF01726 LexA DNA binding domain AL475_07985 PF00717 Peptidase S24-like AL475_07995 PF01554 MatE AL475_08000 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL475_08000 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_08005 PF00440 Bacterial regulatory proteins, tetR family AL475_08015 PF05958 tRNA (Uracil-5-)-methyltransferase AL475_08020 PF00593 TonB dependent receptor AL475_08020 PF07715 TonB-dependent Receptor Plug Domain AL475_08030 PF01177 Asp/Glu/Hydantoin racemase AL475_08090 PF00962 Adenosine/AMP deaminase AL475_08095 PF03707 Bacterial signalling protein N terminal repeat AL475_08095 PF00990 Diguanylate cyclase, GGDEF domain AL475_08095 PF00563 EAL domain AL475_08095 PF13188 PAS domain AL475_08100 PF00158 Sigma-54 interaction domain AL475_08100 PF00072 Response regulator receiver domain AL475_08100 PF02954 Bacterial regulatory protein, Fis family AL475_08105 PF00512 His Kinase A (phospho-acceptor) domain AL475_08105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_08105 PF00989 PAS fold AL475_08115 PF03951 Glutamine synthetase, beta-Grasp domain AL475_08115 PF00120 Glutamine synthetase, catalytic domain AL475_08135 PF03631 Virulence factor BrkB AL475_08140 PF02580 D-Tyr-tRNA(Tyr) deacylase AL475_08145 PF09500 Putative thioesterase (yiiD_Cterm) AL475_08145 PF00583 Acetyltransferase (GNAT) family AL475_08150 PF05170 AsmA family AL475_08155 PF01293 Phosphoenolpyruvate carboxykinase AL475_08165 PF01430 Hsp33 protein AL475_08170 PF01479 S4 domain AL475_08175 PF11356 Type II secretion system protein C AL475_08180 PF00263 Bacterial type II and III secretion system protein AL475_08180 PF03958 Bacterial type II/III secretion system short domain AL475_08185 PF00437 Type II/IV secretion system protein AL475_08190 PF00482 Type II secretion system (T2SS), protein F AL475_08195 PF07963 Prokaryotic N-terminal methylation motif AL475_08195 PF08334 Type II secretion system (T2SS), protein G AL475_08200 PF12019 Type II transport protein GspH AL475_08205 PF07963 Prokaryotic N-terminal methylation motif AL475_08205 PF02501 Type II secretion system (T2SS), protein I AL475_08210 PF11612 Type II secretion system (T2SS), protein J AL475_08210 PF07963 Prokaryotic N-terminal methylation motif AL475_08215 PF03934 Type II secretion system (T2SS), protein K AL475_08220 PF12693 GspL periplasmic domain AL475_08220 PF05134 Type II secretion system (T2SS), protein L AL475_08225 PF04612 Type II secretion system (T2SS), protein M AL475_08230 PF01203 Type II secretion system (T2SS), protein N AL475_08235 PF00459 Inositol monophosphatase family AL475_08240 PF00293 NUDIX domain AL475_08245 PF01521 Iron-sulphur cluster biosynthesis AL475_08245 PF01106 NifU-like domain AL475_08250 PF00156 Phosphoribosyl transferase domain AL475_08255 PF00561 alpha/beta hydrolase fold AL475_08265 PF17674 HHH domain AL475_08265 PF00575 S1 RNA binding domain AL475_08265 PF09371 Tex-like protein N-terminal domain AL475_08265 PF16921 Tex protein YqgF-like domain AL475_08275 PF01272 Transcription elongation factor, GreA/GreB, C-term AL475_08275 PF03449 Transcription elongation factor, N-terminal AL475_08280 PF00356 Bacterial regulatory proteins, lacI family AL475_08280 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL475_08285 PF00920 Dehydratase family AL475_08290 PF01202 Shikimate kinase AL475_08295 PF02447 GntP family permease AL475_08300 PF01081 KDPG and KHG aldolase AL475_08305 PF00486 Transcriptional regulatory protein, C terminal AL475_08305 PF00072 Response regulator receiver domain AL475_08310 PF00512 His Kinase A (phospho-acceptor) domain AL475_08310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_08310 PF00672 HAMP domain AL475_08315 PF00860 Permease family AL475_08320 PF17191 RecG wedge domain AL475_08320 PF00271 Helicase conserved C-terminal domain AL475_08320 PF00270 DEAD/DEAH box helicase AL475_08325 PF00588 SpoU rRNA Methylase family AL475_08325 PF12105 SpoU, rRNA methylase, C-terminal AL475_08330 PF04607 Region found in RelA / SpoT proteins AL475_08330 PF02824 TGS domain AL475_08330 PF13291 ACT domain AL475_08335 PF01192 RNA polymerase Rpb6 AL475_08340 PF00625 Guanylate kinase AL475_08345 PF02592 Putative vitamin uptake transporter AL475_08350 PF00474 Sodium:solute symporter family AL475_08360 PF00999 Sodium/hydrogen exchanger family AL475_08360 PF03471 Transporter associated domain AL475_08360 PF02080 TrkA-C domain AL475_08365 PF00072 Response regulator receiver domain AL475_08365 PF00196 Bacterial regulatory proteins, luxR family AL475_08370 PF11412 Disulphide bond corrector protein DsbC AL475_08370 PF02683 Cytochrome C biogenesis protein transmembrane region AL475_08375 PF01316 Arginine repressor, DNA binding domain AL475_08375 PF02863 Arginine repressor, C-terminal domain AL475_08380 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL475_08380 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL475_08385 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL475_08385 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL475_08395 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL475_08395 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL475_08400 PF00696 Amino acid kinase family AL475_08410 PF03606 C4-dicarboxylate anaerobic carrier AL475_08415 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL475_08420 PF00206 Lyase AL475_08420 PF10415 Fumarase C C-terminus AL475_08425 PF00990 Diguanylate cyclase, GGDEF domain AL475_08425 PF17158 Membrane-associated sensor, integral membrane domain AL475_08430 PF04186 FxsA cytoplasmic membrane protein AL475_08435 PF00588 SpoU rRNA Methylase family AL475_08440 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL475_08440 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL475_08445 PF16527 Two-component sensor protein CpxA, periplasmic domain AL475_08445 PF00512 His Kinase A (phospho-acceptor) domain AL475_08445 PF00672 HAMP domain AL475_08445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_08450 PF00072 Response regulator receiver domain AL475_08450 PF00486 Transcriptional regulatory protein, C terminal AL475_08455 PF07813 LTXXQ motif family protein AL475_08460 PF16916 Dimerisation domain of Zinc Transporter AL475_08460 PF01545 Cation efflux family AL475_08465 PF00365 Phosphofructokinase AL475_08470 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AL475_08480 PF02219 Methylenetetrahydrofolate reductase AL475_08485 PF00696 Amino acid kinase family AL475_08485 PF00742 Homoserine dehydrogenase AL475_08485 PF03447 Homoserine dehydrogenase, NAD binding domain AL475_08490 PF01053 Cys/Met metabolism PLP-dependent enzyme AL475_08495 PF01340 Met Apo-repressor, MetJ AL475_08500 PF00390 Malic enzyme, N-terminal domain AL475_08500 PF03949 Malic enzyme, NAD binding domain AL475_08505 PF01197 Ribosomal protein L31 AL475_08510 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL475_08510 PF17764 3′ DNA-binding domain (3′BD) AL475_08510 PF18074 Primosomal protein N C-terminal domain AL475_08510 PF00271 Helicase conserved C-terminal domain AL475_08510 PF00270 DEAD/DEAH box helicase AL475_08515 PF00356 Bacterial regulatory proteins, lacI family AL475_08525 PF00227 Proteasome subunit AL475_08530 PF10431 C-terminal, D2-small domain, of ClpB protein AL475_08530 PF07724 AAA domain (Cdc48 subfamily) AL475_08530 PF00004 ATPase family associated with various cellular activities (AAA) AL475_08535 PF01040 UbiA prenyltransferase family AL475_08540 PF03737 Aldolase/RraA AL475_08550 PF00121 Triosephosphate isomerase AL475_08575 PF00166 Chaperonin 10 Kd subunit AL475_08580 PF00118 TCP-1/cpn60 chaperonin family AL475_08585 PF00005 ABC transporter AL475_08595 PF02308 MgtC family AL475_08600 PF04055 Radical SAM superfamily AL475_08605 PF01132 Elongation factor P (EF-P) OB domain AL475_08605 PF08207 Elongation factor P (EF-P) KOW-like domain AL475_08605 PF09285 Elongation factor P, C-terminal AL475_08610 PF02313 Fumarate reductase subunit D AL475_08615 PF02300 Fumarate reductase subunit C AL475_08620 PF13183 4Fe-4S dicluster domain AL475_08620 PF13085 2Fe-2S iron-sulfur cluster binding domain AL475_08625 PF00890 FAD binding domain AL475_08625 PF02910 Fumarate reductase flavoprotein C-term AL475_08635 PF00152 tRNA synthetases class II (D, K and N) AL475_08640 PF00581 Rhodanese-like domain AL475_08645 PF02556 Preprotein translocase subunit SecB AL475_08650 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL475_08650 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL475_08655 PF06426 Serine acetyltransferase, N-terminal AL475_08655 PF00132 Bacterial transferase hexapeptide (six repeats) AL475_08660 PF03551 Transcriptional regulator PadR-like family AL475_08660 PF10400 Virulence activator alpha C-term AL475_08665 PF00311 Phosphoenolpyruvate carboxylase AL475_08670 PF07687 Peptidase dimerisation domain AL475_08670 PF01546 Peptidase family M20/M25/M40 AL475_08675 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL475_08675 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL475_08680 PF00696 Amino acid kinase family AL475_08685 PF00764 Arginosuccinate synthase AL475_08690 PF00583 Acetyltransferase (GNAT) family AL475_08690 PF00206 Lyase AL475_08690 PF14698 Argininosuccinate lyase C-terminal AL475_08700 PF08534 Redoxin AL475_08700 PF00462 Glutaredoxin AL475_08705 PF03466 LysR substrate binding domain AL475_08705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_08710 PF17092 Penicillin-binding protein OB-like domain AL475_08710 PF00905 Penicillin binding protein transpeptidase domain AL475_08710 PF00912 Transglycosylase AL475_08735 PF00263 Bacterial type II and III secretion system protein AL475_08735 PF11741 AMIN domain AL475_08735 PF03958 Bacterial type II/III secretion system short domain AL475_08735 PF07660 Secretin and TonB N terminus short domain AL475_08740 PF01202 Shikimate kinase AL475_08745 PF01761 3-dehydroquinate synthase AL475_08755 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL475_08760 PF00834 Ribulose-phosphate 3 epimerase family AL475_08765 PF13419 Haloacid dehalogenase-like hydrolase AL475_08770 PF00579 tRNA synthetases class I (W and Y) AL475_08780 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_08785 PF00117 Glutamine amidotransferase class-I AL475_08790 PF00202 Aminotransferase class-III AL475_08795 PF04958 Arginine N-succinyltransferase beta subunit AL475_08800 PF00171 Aldehyde dehydrogenase family AL475_08810 PF13545 Crp-like helix-turn-helix domain AL475_08810 PF00027 Cyclic nucleotide-binding domain AL475_08815 PF00485 Phosphoribulokinase / Uridine kinase family AL475_08820 PF06794 Uncharacterised protein family (UPF0270) AL475_08825 PF00561 alpha/beta hydrolase fold AL475_08835 PF12848 ABC transporter AL475_08835 PF00005 ABC transporter AL475_08840 PF02525 Flavodoxin-like fold AL475_08845 PF02254 TrkA-N domain AL475_08845 PF00999 Sodium/hydrogen exchanger family AL475_08850 PF09526 Probable metal-binding protein (DUF2387) AL475_08855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL475_08860 PF01112 Asparaginase AL475_08865 PF00709 Adenylosuccinate synthetase AL475_08870 PF08238 Sel1 repeat AL475_08875 PF11893 Domain of unknown function (DUF3413) AL475_08875 PF00884 Sulfatase AL475_08880 PF17876 Cold shock domain AL475_08880 PF08461 Ribonuclease R winged-helix domain AL475_08880 PF08206 Ribonuclease B OB domain AL475_08880 PF00773 RNB domain AL475_08880 PF00575 S1 RNA binding domain AL475_08885 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL475_08885 PF00588 SpoU rRNA Methylase family AL475_08890 PF00338 Ribosomal protein S10p/S20e AL475_08895 PF00297 Ribosomal protein L3 AL475_08900 PF00573 Ribosomal protein L4/L1 family AL475_08905 PF00276 Ribosomal protein L23 AL475_08910 PF00181 Ribosomal Proteins L2, RNA binding domain AL475_08910 PF03947 Ribosomal Proteins L2, C-terminal domain AL475_08915 PF00203 Ribosomal protein S19 AL475_08920 PF00237 Ribosomal protein L22p/L17e AL475_08925 PF07650 KH domain AL475_08925 PF00189 Ribosomal protein S3, C-terminal domain AL475_08930 PF00252 Ribosomal protein L16p/L10e AL475_08935 PF00831 Ribosomal L29 protein AL475_08940 PF00366 Ribosomal protein S17 AL475_08945 PF00238 Ribosomal protein L14p/L23e AL475_08950 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL475_08950 PF00467 KOW motif AL475_08955 PF00673 ribosomal L5P family C-terminus AL475_08955 PF00281 Ribosomal protein L5 AL475_08960 PF00253 Ribosomal protein S14p/S29e AL475_08965 PF00410 Ribosomal protein S8 AL475_08970 PF00347 Ribosomal protein L6 AL475_08975 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL475_08980 PF03719 Ribosomal protein S5, C-terminal domain AL475_08980 PF00333 Ribosomal protein S5, N-terminal domain AL475_08985 PF00327 Ribosomal protein L30p/L7e AL475_08995 PF00344 SecY translocase AL475_09000 PF00444 Ribosomal protein L36 AL475_09005 PF00416 Ribosomal protein S13/S18 AL475_09010 PF00411 Ribosomal protein S11 AL475_09015 PF00163 Ribosomal protein S4/S9 N-terminal domain AL475_09015 PF01479 S4 domain AL475_09020 PF01000 RNA polymerase Rpb3/RpoA insert domain AL475_09020 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL475_09020 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL475_09025 PF01196 Ribosomal protein L17 AL475_09035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL475_09035 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL475_09040 PF08525 Opacity-associated protein A N-terminal motif AL475_09040 PF04225 Opacity-associated protein A LysM-like domain AL475_09045 PF00892 EamA-like transporter family AL475_09050 PF13673 Acetyltransferase (GNAT) domain AL475_09055 PF00270 DEAD/DEAH box helicase AL475_09055 PF00271 Helicase conserved C-terminal domain AL475_09055 PF03880 DbpA RNA binding domain AL475_09065 PF00149 Calcineurin-like phosphoesterase AL475_09065 PF02872 5'-nucleotidase, C-terminal domain AL475_09070 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL475_09070 PF14824 Sirohaem biosynthesis protein central AL475_09070 PF10414 Sirohaem synthase dimerisation region AL475_09075 PF01507 Phosphoadenosine phosphosulfate reductase family AL475_09080 PF00009 Elongation factor Tu GTP binding domain AL475_09085 PF03600 Citrate transporter AL475_09085 PF02080 TrkA-C domain AL475_09110 PF02687 FtsX-like permease family AL475_09110 PF00005 ABC transporter AL475_09110 PF12704 MacB-like periplasmic core domain AL475_09120 PF10795 Protein of unknown function (DUF2607) AL475_09125 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL475_09130 PF01625 Peptide methionine sulfoxide reductase AL475_09135 PF01103 Surface antigen AL475_09135 PF07244 Surface antigen variable number repeat AL475_09135 PF17243 POTRA domain TamA domain 1 AL475_09140 PF04357 TamB, inner membrane protein subunit of TAM complex AL475_09145 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AL475_09150 PF00719 Inorganic pyrophosphatase AL475_09155 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL475_09160 PF08245 Mur ligase middle domain AL475_09160 PF01225 Mur ligase family, catalytic domain AL475_09160 PF02875 Mur ligase family, glutamate ligase domain AL475_09165 PF02441 Flavoprotein AL475_09175 PF00528 Binding-protein-dependent transport system inner membrane component AL475_09180 PF00005 ABC transporter AL475_09185 PF04751 Protein of unknown function (DUF615) AL475_09190 PF01523 Putative modulator of DNA gyrase AL475_09195 PF03448 MgtE intracellular N domain AL475_09195 PF01769 Divalent cation transporter AL475_09195 PF00571 CBS domain AL475_09200 PF00381 PTS HPr component phosphorylation site AL475_09205 PF03668 P-loop ATPase protein family AL475_09210 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL475_09215 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL475_09220 PF04963 Sigma-54 factor, core binding domain AL475_09220 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL475_09220 PF04552 Sigma-54, DNA binding domain AL475_09225 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL475_09225 PF00005 ABC transporter AL475_09230 PF03968 OstA-like protein AL475_09245 PF01380 SIS domain AL475_09245 PF00571 CBS domain AL475_09250 PF01699 Sodium/calcium exchanger protein AL475_09255 PF00005 ABC transporter AL475_09260 PF02405 Permease MlaE AL475_09265 PF02470 MlaD protein AL475_09270 PF05494 MlaC protein AL475_09275 PF13466 STAS domain AL475_09280 PF01722 BolA-like protein AL475_09285 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL475_09290 PF01553 Acyltransferase AL475_09295 PF01042 Endoribonuclease L-PSP AL475_09300 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL475_09300 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL475_09305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL475_09305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL475_09310 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL475_09310 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL475_09315 PF13638 PIN domain AL475_09315 PF02562 PhoH-like protein AL475_09325 PF00271 Helicase conserved C-terminal domain AL475_09325 PF00176 SNF2 family N-terminal domain AL475_09325 PF12137 RNA polymerase recycling family C-terminal AL475_09325 PF18339 RapA N-terminal Tudor like domain 1 AL475_09325 PF18337 RapA N-terminal Tudor like domain AL475_09335 PF00849 RNA pseudouridylate synthase AL475_09340 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL475_09340 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL475_09345 PF10458 Valyl tRNA synthetase tRNA binding arm AL475_09345 PF00133 tRNA synthetases class I (I, L, M and V) AL475_09345 PF08264 Anticodon-binding domain of tRNA AL475_09355 PF02789 Cytosol aminopeptidase family, N-terminal domain AL475_09355 PF00883 Cytosol aminopeptidase family, catalytic domain AL475_09360 PF03739 Lipopolysaccharide export system permease LptF/LptG AL475_09365 PF03739 Lipopolysaccharide export system permease LptF/LptG AL475_09380 PF00990 Diguanylate cyclase, GGDEF domain AL475_09380 PF07694 5TMR of 5TMR-LYT AL475_09400 PF01590 GAF domain AL475_09400 PF00563 EAL domain AL475_09400 PF00989 PAS fold AL475_09400 PF00990 Diguanylate cyclase, GGDEF domain AL475_09460 PF00330 Aconitase family (aconitate hydratase) AL475_09465 PF00180 Isocitrate/isopropylmalate dehydrogenase AL475_09470 PF08502 LeuA allosteric (dimerisation) domain AL475_09470 PF00682 HMGL-like AL475_09480 PF01569 PAP2 superfamily AL475_09490 PF03466 LysR substrate binding domain AL475_09490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_09495 PF00501 AMP-binding enzyme AL475_09500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL475_09500 PF00205 Thiamine pyrophosphate enzyme, central domain AL475_09500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL475_09505 PF10369 Small subunit of acetolactate synthase AL475_09510 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL475_09510 PF01842 ACT domain AL475_09510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL475_09515 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL475_09520 PF01812 5-formyltetrahydrofolate cyclo-ligase family AL475_09530 PF05164 Cell division protein ZapA AL475_09535 PF03695 Uncharacterised protein family (UPF0149) AL475_09540 PF01494 FAD binding domain AL475_09545 PF01494 FAD binding domain AL475_09555 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL475_09555 PF04073 Aminoacyl-tRNA editing domain AL475_09555 PF03129 Anticodon binding domain AL475_09565 PF03937 Flavinator of succinate dehydrogenase AL475_09575 PF02910 Fumarate reductase flavoprotein C-term AL475_09575 PF00890 FAD binding domain AL475_09580 PF04542 Sigma-70 region 2 AL475_09580 PF08281 Sigma-70, region 4 AL475_09585 PF03873 Anti sigma-E protein RseA, C-terminal domain AL475_09585 PF03872 Anti sigma-E protein RseA, N-terminal domain AL475_09590 PF17188 MucB/RseB C-terminal domain AL475_09590 PF03888 MucB/RseB N-terminal domain AL475_09600 PF06421 GTP-binding protein LepA C-terminus AL475_09600 PF00679 Elongation factor G C-terminus AL475_09600 PF00009 Elongation factor Tu GTP binding domain AL475_09600 PF03144 Elongation factor Tu domain 2 AL475_09605 PF10502 Signal peptidase, peptidase S26 AL475_09610 PF00035 Double-stranded RNA binding motif AL475_09610 PF14622 Ribonuclease-III-like AL475_09615 PF01926 50S ribosome-binding GTPase AL475_09615 PF07650 KH domain AL475_09620 PF02565 Recombination protein O C terminal AL475_09620 PF11967 Recombination protein O N terminal AL475_09625 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL475_09630 PF01648 4'-phosphopantetheinyl transferase superfamily AL475_09635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_09635 PF00672 HAMP domain AL475_09635 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL475_09635 PF00072 Response regulator receiver domain AL475_09635 PF01627 Hpt domain AL475_09635 PF00512 His Kinase A (phospho-acceptor) domain AL475_09640 PF05958 tRNA (Uracil-5-)-methyltransferase AL475_09640 PF01938 TRAM domain AL475_09645 PF02824 TGS domain AL475_09645 PF04607 Region found in RelA / SpoT proteins AL475_09645 PF13291 ACT domain AL475_09650 PF03819 MazG nucleotide pyrophosphohydrolase domain AL475_09655 PF06418 CTP synthase N-terminus AL475_09655 PF00117 Glutamine amidotransferase class-I AL475_09660 PF00113 Enolase, C-terminal TIM barrel domain AL475_09660 PF03952 Enolase, N-terminal domain AL475_09665 PF12627 Probable RNA and SrmB- binding site of polymerase A AL475_09665 PF01743 Poly A polymerase head domain AL475_09665 PF01966 HD domain AL475_09670 PF13401 AAA domain AL475_09670 PF01471 Putative peptidoglycan binding domain AL475_09680 PF08239 Bacterial SH3 domain AL475_09685 PF01384 Phosphate transporter family AL475_09690 PF01865 Protein of unknown function DUF47 AL475_09695 PF01928 CYTH domain AL475_09700 PF00027 Cyclic nucleotide-binding domain AL475_09700 PF00520 Ion transport protein AL475_09705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_09705 PF00672 HAMP domain AL475_09710 PF08335 GlnD PII-uridylyltransferase AL475_09710 PF03710 Glutamate-ammonia ligase adenylyltransferase AL475_09715 PF00294 pfkB family carbohydrate kinase AL475_09715 PF01467 Cytidylyltransferase-like AL475_09720 PF02321 Outer membrane efflux protein AL475_09725 PF00293 NUDIX domain AL475_09730 PF06853 Protein of unknown function (DUF1249) AL475_09735 PF00149 Calcineurin-like phosphoesterase AL475_09740 PF05728 Uncharacterised protein family (UPF0227) AL475_09745 PF01751 Toprim domain AL475_09745 PF00204 DNA gyrase B AL475_09745 PF00986 DNA gyrase B subunit, carboxyl terminus AL475_09745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_09750 PF00521 DNA gyrase/topoisomerase IV, subunit A AL475_09750 PF03989 DNA gyrase C-terminal domain, beta-propeller AL475_09755 PF03884 DNA gyrase inhibitor YacG AL475_09760 PF07072 Cell division protein AL475_09765 PF01121 Dephospho-CoA kinase AL475_09770 PF01478 Type IV leader peptidase family AL475_09770 PF06750 Bacterial Peptidase A24 N-terminal domain AL475_09775 PF00482 Type II secretion system (T2SS), protein F AL475_09785 PF07963 Prokaryotic N-terminal methylation motif AL475_09785 PF00114 Pilin (bacterial filament) AL475_09790 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL475_09790 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL475_09795 PF01510 N-acetylmuramoyl-L-alanine amidase AL475_09800 PF00258 Flavodoxin AL475_09805 PF00589 Phage integrase family AL475_09805 PF02899 Phage integrase, N-terminal SAM-like domain AL475_09810 PF13098 Thioredoxin-like domain AL475_09810 PF10411 Disulfide bond isomerase protein N-terminus AL475_09815 PF02272 DHHA1 domain AL475_09815 PF01368 DHH family AL475_09815 PF17768 RecJ OB domain AL475_09820 PF07729 FCD domain AL475_09820 PF00392 Bacterial regulatory proteins, gntR family AL475_09825 PF17831 Pyruvate dehydrogenase E1 component middle domain AL475_09825 PF00456 Transketolase, thiamine diphosphate binding domain AL475_09830 PF02817 e3 binding domain AL475_09830 PF00364 Biotin-requiring enzyme AL475_09830 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL475_09835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL475_09835 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_09840 PF00440 Bacterial regulatory proteins, tetR family AL475_09845 PF00156 Phosphoribosyl transferase domain AL475_09850 PF00484 Carbonic anhydrase AL475_09855 PF00005 ABC transporter AL475_09860 PF01061 ABC-2 type transporter AL475_09865 PF02569 Pantoate-beta-alanine ligase AL475_09870 PF02548 Ketopantoate hydroxymethyltransferase AL475_09875 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL475_09880 PF12626 Polymerase A arginine-rich C-terminus AL475_09880 PF12627 Probable RNA and SrmB- binding site of polymerase A AL475_09880 PF01743 Poly A polymerase head domain AL475_09885 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL475_09890 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL475_09895 PF17746 SfsA N-terminal OB domain AL475_09895 PF03749 Sugar fermentation stimulation protein RE domain AL475_09900 PF00270 DEAD/DEAH box helicase AL475_09900 PF04408 Helicase associated domain (HA2) AL475_09900 PF00271 Helicase conserved C-terminal domain AL475_09900 PF08482 ATP-dependent helicase C-terminal AL475_09905 PF00905 Penicillin binding protein transpeptidase domain AL475_09905 PF14814 Bifunctional transglycosylase second domain AL475_09905 PF00912 Transglycosylase AL475_09910 PF01734 Patatin-like phospholipase AL475_09915 PF00330 Aconitase family (aconitate hydratase) AL475_09915 PF11791 Aconitate B N-terminal domain AL475_09915 PF06434 Aconitate hydratase 2 N-terminus AL475_09920 PF06062 Uncharacterised protein family (UPF0231) AL475_09925 PF00543 Nitrogen regulatory protein P-II AL475_09930 PF00909 Ammonium Transporter Family AL475_09935 PF13416 Bacterial extracellular solute-binding protein AL475_09945 PF08402 TOBE domain AL475_09945 PF00005 ABC transporter AL475_09950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL475_09950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL475_09950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL475_09950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL475_09955 PF06165 Glycosyltransferase family 36 AL475_09955 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL475_09960 PF00728 Glycosyl hydrolase family 20, catalytic domain AL475_09960 PF02838 Glycosyl hydrolase family 20, domain 2 AL475_09965 PF01869 BadF/BadG/BcrA/BcrD ATPase family AL475_09975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL475_09975 PF00005 ABC transporter AL475_09980 PF00005 ABC transporter AL475_09980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL475_09985 PF12911 N-terminal TM domain of oligopeptide transport permease C AL475_09985 PF00528 Binding-protein-dependent transport system inner membrane component AL475_09990 PF00528 Binding-protein-dependent transport system inner membrane component AL475_09995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL475_10000 PF00072 Response regulator receiver domain AL475_10000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_10000 PF09308 LuxQ, periplasmic AL475_10000 PF00512 His Kinase A (phospho-acceptor) domain AL475_10005 PF05175 Methyltransferase small domain AL475_10005 PF08468 Methyltransferase small domain N-terminal AL475_10010 PF01594 AI-2E family transporter AL475_10015 PF00202 Aminotransferase class-III AL475_10020 PF01521 Iron-sulphur cluster biosynthesis AL475_10030 PF00873 AcrB/AcrD/AcrF family AL475_10035 PF01551 Peptidase family M23 AL475_10035 PF04225 Opacity-associated protein A LysM-like domain AL475_10040 PF01479 S4 domain AL475_10040 PF00579 tRNA synthetases class I (W and Y) AL475_10050 PF00571 CBS domain AL475_10050 PF01769 Divalent cation transporter AL475_10050 PF03448 MgtE intracellular N domain AL475_10055 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL475_10060 PF13609 Gram-negative porin AL475_10065 PF01272 Transcription elongation factor, GreA/GreB, C-term AL475_10065 PF03449 Transcription elongation factor, N-terminal AL475_10070 PF01985 CRS1 / YhbY (CRM) domain AL475_10075 PF01728 FtsJ-like methyltransferase AL475_10080 PF00004 ATPase family associated with various cellular activities (AAA) AL475_10080 PF01434 Peptidase family M41 AL475_10080 PF06480 FtsH Extracellular AL475_10080 PF17862 AAA+ lid domain AL475_10085 PF00809 Pterin binding enzyme AL475_10090 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL475_10090 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL475_10090 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL475_10090 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL475_10095 PF03840 Preprotein translocase SecG subunit AL475_10110 PF02576 RimP N-terminal domain AL475_10110 PF17384 RimP C-terminal SH3 domain AL475_10115 PF13184 NusA-like KH domain AL475_10115 PF08529 NusA N-terminal domain AL475_10115 PF00575 S1 RNA binding domain AL475_10120 PF04760 Translation initiation factor IF-2, N-terminal region AL475_10120 PF00009 Elongation factor Tu GTP binding domain AL475_10120 PF11987 Translation-initiation factor 2 AL475_10120 PF08364 Bacterial translation initiation factor IF-2 associated region AL475_10125 PF02033 Ribosome-binding factor A AL475_10130 PF09157 Pseudouridine synthase II TruB, C-terminal AL475_10130 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL475_10130 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL475_10135 PF00312 Ribosomal protein S15 AL475_10140 PF00575 S1 RNA binding domain AL475_10140 PF03725 3' exoribonuclease family, domain 2 AL475_10140 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL475_10140 PF00013 KH domain AL475_10140 PF01138 3' exoribonuclease family, domain 1 AL475_10145 PF07719 Tetratricopeptide repeat AL475_10145 PF13181 Tetratricopeptide repeat AL475_10155 PF01554 MatE AL475_10170 PF00563 EAL domain AL475_10170 PF00990 Diguanylate cyclase, GGDEF domain AL475_10170 PF03707 Bacterial signalling protein N terminal repeat AL475_10180 PF13508 Acetyltransferase (GNAT) domain AL475_10190 PF00583 Acetyltransferase (GNAT) family AL475_10195 PF00563 EAL domain AL475_10195 PF00990 Diguanylate cyclase, GGDEF domain AL475_10195 PF03707 Bacterial signalling protein N terminal repeat AL475_10200 PF16658 Class II release factor RF3, C-terminal domain AL475_10200 PF00009 Elongation factor Tu GTP binding domain AL475_10200 PF03144 Elongation factor Tu domain 2 AL475_10205 PF00270 DEAD/DEAH box helicase AL475_10205 PF00271 Helicase conserved C-terminal domain AL475_10210 PF05175 Methyltransferase small domain AL475_10215 PF05525 Branched-chain amino acid transport protein AL475_10225 PF01336 OB-fold nucleic acid binding domain AL475_10225 PF00152 tRNA synthetases class II (D, K and N) AL475_10230 PF02954 Bacterial regulatory protein, Fis family AL475_10230 PF00072 Response regulator receiver domain AL475_10230 PF00158 Sigma-54 interaction domain AL475_10240 PF00248 Aldo/keto reductase family AL475_10250 PF02976 DNA mismatch repair enzyme MutH AL475_10255 PF00293 NUDIX domain AL475_10260 PF05524 PEP-utilising enzyme, N-terminal AL475_10260 PF00391 PEP-utilising enzyme, mobile domain AL475_10260 PF02896 PEP-utilising enzyme, TIM barrel domain AL475_10260 PF01590 GAF domain AL475_10265 PF01925 Sulfite exporter TauE/SafE AL475_10270 PF01790 Prolipoprotein diacylglyceryl transferase AL475_10275 PF00303 Thymidylate synthase AL475_10280 PF02690 Na+/Pi-cotransporter AL475_10285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_10285 PF03466 LysR substrate binding domain AL475_10290 PF01022 Bacterial regulatory protein, arsR family AL475_10295 PF01649 Ribosomal protein S20 AL475_10300 PF03023 Lipid II flippase MurJ AL475_10305 PF06574 FAD synthetase AL475_10305 PF01687 Riboflavin kinase AL475_10310 PF00133 tRNA synthetases class I (I, L, M and V) AL475_10310 PF08264 Anticodon-binding domain of tRNA AL475_10310 PF06827 Zinc finger found in FPG and IleRS AL475_10315 PF01252 Signal peptidase (SPase) II AL475_10320 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL475_10325 PF02401 LytB protein AL475_10330 PF02554 Carbon starvation protein CstA AL475_10345 PF13580 SIS domain AL475_10350 PF03702 Anhydro-N-acetylmuramic acid kinase AL475_10355 PF00933 Glycosyl hydrolase family 3 N terminal domain AL475_10360 PF00072 Response regulator receiver domain AL475_10360 PF04397 LytTr DNA-binding domain AL475_10365 PF06580 Histidine kinase AL475_10365 PF07694 5TMR of 5TMR-LYT AL475_10370 PF00793 DAHP synthetase I family AL475_10375 PF01817 Chorismate mutase type II AL475_10375 PF02153 Prephenate dehydrogenase AL475_10380 PF07238 PilZ domain AL475_10385 PF12848 ABC transporter AL475_10385 PF00005 ABC transporter AL475_10390 PF01464 Transglycosylase SLT domain AL475_10390 PF14718 Soluble lytic murein transglycosylase L domain AL475_10395 PF01371 Trp repressor protein AL475_10400 PF01931 Protein of unknown function DUF84 AL475_10405 PF00563 EAL domain AL475_10405 PF00990 Diguanylate cyclase, GGDEF domain AL475_10410 PF13416 Bacterial extracellular solute-binding protein AL475_10415 PF01817 Chorismate mutase type II AL475_10415 PF00800 Prephenate dehydratase AL475_10420 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL475_10425 PF01464 Transglycosylase SLT domain AL475_10425 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL475_10430 PF13525 Outer membrane lipoprotein AL475_10435 PF01479 S4 domain AL475_10435 PF00849 RNA pseudouridylate synthase AL475_10445 PF02861 Clp amino terminal domain, pathogenicity island component AL475_10445 PF07724 AAA domain (Cdc48 subfamily) AL475_10445 PF00004 ATPase family associated with various cellular activities (AAA) AL475_10445 PF10431 C-terminal, D2-small domain, of ClpB protein AL475_10445 PF17871 AAA lid domain AL475_10455 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL475_10460 PF00528 Binding-protein-dependent transport system inner membrane component AL475_10465 PF00005 ABC transporter AL475_10475 PF01979 Amidohydrolase family AL475_10510 PF01738 Dienelactone hydrolase family AL475_10520 PF00881 Nitroreductase family AL475_10525 PF07690 Major Facilitator Superfamily AL475_10530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL475_10540 PF05175 Methyltransferase small domain AL475_10545 PF01722 BolA-like protein AL475_10550 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AL475_10550 PF11973 NQRA C-terminal domain AL475_10555 PF03116 NQR2, RnfD, RnfE family AL475_10560 PF04205 FMN-binding domain AL475_10565 PF02508 Rnf-Nqr subunit, membrane protein AL475_10570 PF02508 Rnf-Nqr subunit, membrane protein AL475_10575 PF00175 Oxidoreductase NAD-binding domain AL475_10575 PF00970 Oxidoreductase FAD-binding domain AL475_10575 PF00111 2Fe-2S iron-sulfur cluster binding domain AL475_10580 PF02424 ApbE family AL475_10595 PF11798 IMS family HHH motif AL475_10595 PF11799 impB/mucB/samB family C-terminal domain AL475_10595 PF00817 impB/mucB/samB family AL475_10610 PF00209 Sodium:neurotransmitter symporter family AL475_10620 PF18030 RimK PreATP-grasp domain AL475_10620 PF08443 RimK-like ATP-grasp domain AL475_10625 PF08443 RimK-like ATP-grasp domain AL475_10625 PF18030 RimK PreATP-grasp domain AL475_10630 PF01546 Peptidase family M20/M25/M40 AL475_10630 PF07687 Peptidase dimerisation domain AL475_10635 PF00392 Bacterial regulatory proteins, gntR family AL475_10635 PF00155 Aminotransferase class I and II AL475_10640 PF00202 Aminotransferase class-III AL475_10645 PF00171 Aldehyde dehydrogenase family AL475_10650 PF03480 Bacterial extracellular solute-binding protein, family 7 AL475_10660 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL475_10665 PF00860 Permease family AL475_10670 PF00156 Phosphoribosyl transferase domain AL475_10680 PF07417 Sigma factor-binding transcriptional regulator Crl AL475_10685 PF01472 PUA domain AL475_10685 PF00696 Amino acid kinase family AL475_10690 PF00171 Aldehyde dehydrogenase family AL475_10695 PF03477 ATP cone domain AL475_10700 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL475_10700 PF01872 RibD C-terminal domain AL475_10705 PF00677 Lumazine binding domain AL475_10710 PF00925 GTP cyclohydrolase II AL475_10710 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL475_10715 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL475_10720 PF01029 NusB family AL475_10725 PF00586 AIR synthase related protein, N-terminal domain AL475_10725 PF02769 AIR synthase related protein, C-terminal domain AL475_10730 PF04608 Phosphatidylglycerophosphatase A AL475_10735 PF11944 Protein of unknown function (DUF3461) AL475_10740 PF01966 HD domain AL475_10740 PF08335 GlnD PII-uridylyltransferase AL475_10740 PF01909 Nucleotidyltransferase domain AL475_10745 PF00557 Metallopeptidase family M24 AL475_10750 PF00318 Ribosomal protein S2 AL475_10755 PF00889 Elongation factor TS AL475_10760 PF00696 Amino acid kinase family AL475_10765 PF01765 Ribosome recycling factor AL475_10770 PF01255 Putative undecaprenyl diphosphate synthase AL475_10780 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL475_10780 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL475_10780 PF13288 DXP reductoisomerase C-terminal domain AL475_10785 PF02163 Peptidase family M50 AL475_10785 PF17820 PDZ domain AL475_10790 PF01103 Surface antigen AL475_10790 PF07244 Surface antigen variable number repeat AL475_10795 PF03938 Outer membrane protein (OmpH-like) AL475_10800 PF00132 Bacterial transferase hexapeptide (six repeats) AL475_10800 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL475_10805 PF07977 FabA-like domain AL475_10810 PF00132 Bacterial transferase hexapeptide (six repeats) AL475_10810 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL475_10815 PF02684 Lipid-A-disaccharide synthetase AL475_10820 PF01351 Ribonuclease HII AL475_10825 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL475_10825 PF14579 Helix-hairpin-helix motif AL475_10825 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL475_10825 PF02811 PHP domain AL475_10825 PF01336 OB-fold nucleic acid binding domain AL475_10830 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AL475_10835 PF01171 PP-loop family AL475_10835 PF11734 TilS substrate C-terminal domain AL475_10835 PF09179 TilS substrate binding domain AL475_10840 PF00034 Cytochrome c AL475_10845 PF00543 Nitrogen regulatory protein P-II AL475_10850 PF03372 Endonuclease/Exonuclease/phosphatase family AL475_10860 PF01476 LysM domain AL475_10860 PF01464 Transglycosylase SLT domain AL475_10870 PF08241 Methyltransferase domain AL475_10875 PF00075 RNase H AL475_10880 PF00929 Exonuclease AL475_10890 PF02770 Acyl-CoA dehydrogenase, middle domain AL475_10890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL475_10890 PF09317 Domain of unknown function (DUF1974) AL475_10890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL475_10895 PF13580 SIS domain AL475_10900 PF13230 Glutamine amidotransferases class-II AL475_10905 PF00551 Formyl transferase AL475_10910 PF02769 AIR synthase related protein, C-terminal domain AL475_10910 PF00586 AIR synthase related protein, N-terminal domain AL475_10920 PF00849 RNA pseudouridylate synthase AL475_10920 PF01479 S4 domain AL475_10945 PF02838 Glycosyl hydrolase family 20, domain 2 AL475_10945 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL475_10945 PF00728 Glycosyl hydrolase family 20, catalytic domain AL475_10945 PF03173 Putative carbohydrate binding domain AL475_10955 PF00403 Heavy-metal-associated domain AL475_10960 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL475_10965 PF01389 OmpA-like transmembrane domain AL475_10965 PF00691 OmpA family AL475_10980 PF01219 Prokaryotic diacylglycerol kinase AL475_10985 PF08019 Phosphoethanolamine transferase EptA/EptB AL475_10985 PF00884 Sulfatase AL475_11000 PF00589 Phage integrase family AL475_11000 PF02899 Phage integrase, N-terminal SAM-like domain AL475_11040 PF05840 Bacteriophage replication gene A protein (GPA) AL475_11105 PF04316 Anti-sigma-28 factor, FlgM AL475_11115 PF00072 Response regulator receiver domain AL475_11115 PF01584 CheW-like domain AL475_11120 PF01739 CheR methyltransferase, SAM binding domain AL475_11120 PF03705 CheR methyltransferase, all-alpha domain AL475_11125 PF00460 Flagella basal body rod protein AL475_11130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL475_11130 PF00460 Flagella basal body rod protein AL475_11135 PF03963 Flagellar hook capping protein - N-terminal region AL475_11135 PF13861 FlgD Tudor-like domain AL475_11135 PF13860 FlgD Ig-like domain AL475_11140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL475_11140 PF00460 Flagella basal body rod protein AL475_11140 PF07559 Flagellar basal body protein FlaE AL475_11145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL475_11145 PF00460 Flagella basal body rod protein AL475_11150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL475_11150 PF00460 Flagella basal body rod protein AL475_11155 PF02107 Flagellar L-ring protein AL475_11160 PF02119 Flagellar P-ring protein AL475_11165 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL475_11165 PF10135 Rod binding protein AL475_11170 PF07196 Flagellin hook IN motif AL475_11170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL475_11185 PF00669 Bacterial flagellin N-terminal helical region AL475_11185 PF00700 Bacterial flagellin C-terminal helical region AL475_11185 PF07196 Flagellin hook IN motif AL475_11190 PF00669 Bacterial flagellin N-terminal helical region AL475_11190 PF07196 Flagellin hook IN motif AL475_11190 PF00700 Bacterial flagellin C-terminal helical region AL475_11280 PF06071 Protein of unknown function (DUF933) AL475_11280 PF01926 50S ribosome-binding GTPase AL475_11285 PF01195 Peptidyl-tRNA hydrolase AL475_11290 PF14572 Phosphoribosyl synthetase-associated domain AL475_11290 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL475_11295 PF00288 GHMP kinases N terminal domain AL475_11295 PF08544 GHMP kinases C terminal AL475_11300 PF03550 Outer membrane lipoprotein LolB AL475_11305 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL475_11305 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL475_11305 PF01488 Shikimate / quinate 5-dehydrogenase AL475_11310 PF00472 RF-1 domain AL475_11310 PF03462 PCRF domain AL475_11315 PF17827 PrmC N-terminal domain AL475_11315 PF13847 Methyltransferase domain AL475_11320 PF04247 Invasion gene expression up-regulator, SirB AL475_11325 PF13369 Transglutaminase-like superfamily AL475_11330 PF00793 DAHP synthetase I family AL475_11335 PF00149 Calcineurin-like phosphoesterase AL475_11335 PF02872 5'-nucleotidase, C-terminal domain AL475_11340 PF04073 Aminoacyl-tRNA editing domain AL475_11345 PF00860 Permease family AL475_11360 PF03358 NADPH-dependent FMN reductase AL475_11365 PF03960 ArsC family AL475_11370 PF13181 Tetratricopeptide repeat AL475_11370 PF01435 Peptidase family M48 AL475_11380 PF01594 AI-2E family transporter AL475_11385 PF02743 Cache domain AL475_11385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_11385 PF00672 HAMP domain AL475_11390 PF00578 AhpC/TSA family AL475_11395 PF01842 ACT domain AL475_11400 PF00701 Dihydrodipicolinate synthetase family AL475_11405 PF06804 NlpB/DapX lipoprotein AL475_11415 PF02557 D-alanyl-D-alanine carboxypeptidase AL475_11420 PF07687 Peptidase dimerisation domain AL475_11420 PF01546 Peptidase family M20/M25/M40 AL475_11425 PF03960 ArsC family AL475_11435 PF16363 GDP-mannose 4,6 dehydratase AL475_11440 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AL475_11440 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AL475_11445 PF00288 GHMP kinases N terminal domain AL475_11445 PF10509 Galactokinase galactose-binding signature AL475_11445 PF08544 GHMP kinases C terminal AL475_11450 PF00356 Bacterial regulatory proteins, lacI family AL475_11460 PF11143 Protein of unknown function (DUF2919) AL475_11465 PF04261 Dyp-type peroxidase family AL475_11470 PF00700 Bacterial flagellin C-terminal helical region AL475_11470 PF07196 Flagellin hook IN motif AL475_11470 PF00669 Bacterial flagellin N-terminal helical region AL475_11475 PF00700 Bacterial flagellin C-terminal helical region AL475_11475 PF07196 Flagellin hook IN motif AL475_11475 PF00669 Bacterial flagellin N-terminal helical region AL475_11480 PF07196 Flagellin hook IN motif AL475_11480 PF00700 Bacterial flagellin C-terminal helical region AL475_11480 PF00669 Bacterial flagellin N-terminal helical region AL475_11485 PF03646 FlaG protein AL475_11490 PF02465 Flagellar hook-associated protein 2 N-terminus AL475_11490 PF07195 Flagellar hook-associated protein 2 C-terminus AL475_11490 PF07196 Flagellin hook IN motif AL475_11500 PF02561 Flagellar protein FliS AL475_11510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_11510 PF00512 His Kinase A (phospho-acceptor) domain AL475_11515 PF00072 Response regulator receiver domain AL475_11515 PF02954 Bacterial regulatory protein, Fis family AL475_11515 PF00158 Sigma-54 interaction domain AL475_11520 PF02049 Flagellar hook-basal body complex protein FliE AL475_11525 PF01514 Secretory protein of YscJ/FliF family AL475_11525 PF08345 Flagellar M-ring protein C-terminal AL475_11530 PF01706 FliG C-terminal domain AL475_11530 PF14841 FliG middle domain AL475_11530 PF14842 FliG N-terminal domain AL475_11540 PF18269 T3SS EscN ATPase C-terminal domain AL475_11540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL475_11560 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL475_11560 PF02154 Flagellar motor switch protein FliM AL475_11565 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL475_11570 PF04347 Flagellar biosynthesis protein, FliO AL475_11575 PF00813 FliP family AL475_11580 PF01313 Bacterial export proteins, family 3 AL475_11585 PF01311 Bacterial export proteins, family 1 AL475_11590 PF01312 FlhB HrpN YscU SpaS Family AL475_11595 PF01713 Smr domain AL475_11600 PF05175 Methyltransferase small domain AL475_11605 PF01264 Chorismate synthase AL475_11610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_11610 PF03466 LysR substrate binding domain AL475_11620 PF03458 UPF0126 domain AL475_11625 PF04315 Elongation factor P hydroxylase AL475_11630 PF08891 YfcL protein AL475_11640 PF01266 FAD dependent oxidoreductase AL475_11640 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL475_11645 PF00109 Beta-ketoacyl synthase, N-terminal domain AL475_11645 PF02801 Beta-ketoacyl synthase, C-terminal domain AL475_11650 PF11890 Domain of unknown function (DUF3410) AL475_11650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL475_11650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL475_11655 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL475_11655 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL475_11660 PF01475 Ferric uptake regulator family AL475_11670 PF03466 LysR substrate binding domain AL475_11670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_11675 PF03788 LrgA family AL475_11680 PF04172 LrgB-like family AL475_11685 PF00258 Flavodoxin AL475_11695 PF12697 Alpha/beta hydrolase family AL475_11700 PF17206 SeqA protein N-terminal domain AL475_11700 PF03925 SeqA protein C-terminal domain AL475_11705 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL475_11705 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL475_11705 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL475_11705 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL475_11715 PF01784 NIF3 (NGG1p interacting factor 3) AL475_11720 PF00285 Citrate synthase, C-terminal domain AL475_11725 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL475_11730 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL475_11735 PF02910 Fumarate reductase flavoprotein C-term AL475_11735 PF00890 FAD binding domain AL475_11740 PF13085 2Fe-2S iron-sulfur cluster binding domain AL475_11745 PF16870 2-oxoglutarate dehydrogenase C-terminal AL475_11745 PF16078 2-oxoglutarate dehydrogenase N-terminus AL475_11745 PF02779 Transketolase, pyrimidine binding domain AL475_11745 PF00676 Dehydrogenase E1 component AL475_11750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL475_11750 PF02817 e3 binding domain AL475_11750 PF00364 Biotin-requiring enzyme AL475_11755 PF08442 ATP-grasp domain AL475_11755 PF00549 CoA-ligase AL475_11760 PF02629 CoA binding domain AL475_11760 PF00549 CoA-ligase AL475_11765 PF00950 ABC 3 transport family AL475_11770 PF00005 ABC transporter AL475_11775 PF01297 Zinc-uptake complex component A periplasmic AL475_11780 PF12833 Helix-turn-helix domain AL475_11790 PF04023 FeoA domain AL475_11795 PF07670 Nucleoside recognition AL475_11795 PF07664 Ferrous iron transport protein B C terminus AL475_11795 PF02421 Ferrous iron transport protein B AL475_11810 PF05746 DALR anticodon binding domain AL475_11810 PF03485 Arginyl tRNA synthetase N terminal domain AL475_11810 PF00750 tRNA synthetases class I (R) AL475_11815 PF06185 YecM protein AL475_11820 PF16187 Middle or third domain of peptidase_M16 AL475_11820 PF05193 Peptidase M16 inactive domain AL475_11820 PF00675 Insulinase (Peptidase family M16) AL475_11825 PF00300 Histidine phosphatase superfamily (branch 1) AL475_11830 PF00771 FHIPEP family AL475_11835 PF00448 SRP54-type protein, GTPase domain AL475_11840 PF10609 NUBPL iron-transfer P-loop NTPase AL475_11845 PF04539 Sigma-70 region 3 AL475_11845 PF04542 Sigma-70 region 2 AL475_11845 PF04545 Sigma-70, region 4 AL475_11850 PF00072 Response regulator receiver domain AL475_11855 PF04344 Chemotaxis phosphatase, CheZ AL475_11860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_11860 PF02895 Signal transducing histidine kinase, homodimeric domain AL475_11860 PF01584 CheW-like domain AL475_11860 PF01627 Hpt domain AL475_11860 PF07194 P2 response regulator binding domain AL475_11865 PF00072 Response regulator receiver domain AL475_11865 PF01339 CheB methylesterase AL475_11870 PF13614 AAA domain AL475_11880 PF01584 CheW-like domain AL475_11890 PF00005 ABC transporter AL475_11895 PF03379 CcmB protein AL475_11900 PF01578 Cytochrome C assembly protein AL475_11905 PF04995 Heme exporter protein D (CcmD) AL475_11910 PF03100 CcmE AL475_11915 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL475_11915 PF01578 Cytochrome C assembly protein AL475_11920 PF08534 Redoxin AL475_11925 PF03918 Cytochrome C biogenesis protein AL475_11930 PF03918 Cytochrome C biogenesis protein AL475_11935 PF04333 MlaA lipoprotein AL475_11950 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL475_11950 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL475_11955 PF00462 Glutaredoxin AL475_11960 PF01751 Toprim domain AL475_11960 PF01131 DNA topoisomerase AL475_11965 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AL475_11965 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AL475_11970 PF01494 FAD binding domain AL475_11975 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL475_11990 PF00248 Aldo/keto reductase family AL475_11995 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL475_12005 PF03466 LysR substrate binding domain AL475_12005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_12010 PF04909 Amidohydrolase AL475_12015 PF03737 Aldolase/RraA AL475_12020 PF04303 PrpF protein AL475_12025 PF04909 Amidohydrolase AL475_12035 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AL475_12050 PF01970 Tripartite tricarboxylate transporter TctA family AL475_12055 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL475_12055 PF01488 Shikimate / quinate 5-dehydrogenase AL475_12055 PF08501 Shikimate dehydrogenase substrate binding domain AL475_12060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL475_12070 PF00850 Histone deacetylase domain AL475_12080 PF00155 Aminotransferase class I and II AL475_12095 PF11893 Domain of unknown function (DUF3413) AL475_12095 PF00884 Sulfatase AL475_12100 PF07208 Protein of unknown function (DUF1414) AL475_12105 PF04245 37-kD nucleoid-associated bacterial protein AL475_12115 PF03553 Na+/H+ antiporter family AL475_12120 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL475_12120 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL475_12125 PF00027 Cyclic nucleotide-binding domain AL475_12125 PF00520 Ion transport protein AL475_12130 PF01914 MarC family integral membrane protein AL475_12135 PF00171 Aldehyde dehydrogenase family AL475_12135 PF00465 Iron-containing alcohol dehydrogenase AL475_12145 PF00916 Sulfate permease family AL475_12145 PF01740 STAS domain AL475_12155 PF12111 Polyribonucleotide phosphorylase C terminal AL475_12155 PF00575 S1 RNA binding domain AL475_12155 PF10150 Ribonuclease E/G family AL475_12160 PF00849 RNA pseudouridylate synthase AL475_12160 PF01479 S4 domain AL475_12165 PF02545 Maf-like protein AL475_12170 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL475_12175 PF01783 Ribosomal L32p protein family AL475_12180 PF02504 Fatty acid synthesis protein AL475_12185 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL475_12185 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL475_12190 PF00698 Acyl transferase domain AL475_12200 PF00550 Phosphopantetheine attachment site AL475_12205 PF02801 Beta-ketoacyl synthase, C-terminal domain AL475_12205 PF00109 Beta-ketoacyl synthase, N-terminal domain AL475_12210 PF01063 Amino-transferase class IV AL475_12215 PF02618 YceG-like family AL475_12220 PF02223 Thymidylate kinase AL475_12225 PF09115 DNA polymerase III, delta subunit, C terminal AL475_12230 PF01026 TatD related DNase AL475_12235 PF00367 phosphotransferase system, EIIB AL475_12235 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL475_12235 PF02378 Phosphotransferase system, EIIC AL475_12245 PF00367 phosphotransferase system, EIIB AL475_12245 PF02378 Phosphotransferase system, EIIC AL475_12255 PF00209 Sodium:neurotransmitter symporter family AL475_12270 PF01734 Patatin-like phospholipase AL475_12275 PF02887 Pyruvate kinase, alpha/beta domain AL475_12275 PF00224 Pyruvate kinase, barrel domain AL475_12280 PF00480 ROK family AL475_12285 PF00072 Response regulator receiver domain AL475_12285 PF01584 CheW-like domain AL475_12290 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL475_12290 PF01336 OB-fold nucleic acid binding domain AL475_12290 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL475_12290 PF14579 Helix-hairpin-helix motif AL475_12290 PF02811 PHP domain AL475_12305 PF00106 short chain dehydrogenase AL475_12310 PF08496 Peptidase family S49 N-terminal AL475_12310 PF01343 Peptidase family S49 AL475_12320 PF00795 Carbon-nitrogen hydrolase AL475_12320 PF02540 NAD synthase AL475_12340 PF13286 Phosphohydrolase-associated domain AL475_12340 PF01966 HD domain AL475_12350 PF00155 Aminotransferase class I and II AL475_12355 PF00425 chorismate binding enzyme AL475_12360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL475_12360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL475_12360 PF16582 Middle domain of thiamine pyrophosphate AL475_12365 PF12697 Alpha/beta hydrolase family AL475_12370 PF00378 Enoyl-CoA hydratase/isomerase AL475_12375 PF13378 Enolase C-terminal domain-like AL475_12380 PF13193 AMP-binding enzyme C-terminal domain AL475_12380 PF00501 AMP-binding enzyme AL475_12390 PF03601 Conserved hypothetical protein 698 AL475_12395 PF07690 Major Facilitator Superfamily AL475_12415 PF06445 GyrI-like small molecule binding domain AL475_12420 PF01476 LysM domain AL475_12420 PF01464 Transglycosylase SLT domain AL475_12440 PF00460 Flagella basal body rod protein AL475_12445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL475_12445 PF00460 Flagella basal body rod protein AL475_12450 PF13860 FlgD Ig-like domain AL475_12450 PF13861 FlgD Tudor-like domain AL475_12450 PF03963 Flagellar hook capping protein - N-terminal region AL475_12455 PF07559 Flagellar basal body protein FlaE AL475_12455 PF00460 Flagella basal body rod protein AL475_12455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL475_12460 PF00460 Flagella basal body rod protein AL475_12460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL475_12465 PF00460 Flagella basal body rod protein AL475_12465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL475_12470 PF02107 Flagellar L-ring protein AL475_12475 PF02119 Flagellar P-ring protein AL475_12480 PF10135 Rod binding protein AL475_12480 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL475_12485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL475_12485 PF00460 Flagella basal body rod protein AL475_12535 PF01370 NAD dependent epimerase/dehydratase family AL475_12540 PF04170 NlpE N-terminal domain AL475_12550 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL475_12550 PF00691 OmpA family AL475_12555 PF01618 MotA/TolQ/ExbB proton channel family AL475_12560 PF04545 Sigma-70, region 4 AL475_12560 PF04542 Sigma-70 region 2 AL475_12565 PF03748 Flagellar basal body-associated protein FliL AL475_12585 PF02465 Flagellar hook-associated protein 2 N-terminus AL475_12585 PF07195 Flagellar hook-associated protein 2 C-terminus AL475_12585 PF07196 Flagellin hook IN motif AL475_12590 PF00700 Bacterial flagellin C-terminal helical region AL475_12590 PF00669 Bacterial flagellin N-terminal helical region AL475_12600 PF00771 FHIPEP family AL475_12605 PF01312 FlhB HrpN YscU SpaS Family AL475_12610 PF01311 Bacterial export proteins, family 1 AL475_12615 PF01313 Bacterial export proteins, family 3 AL475_12620 PF00813 FliP family AL475_12625 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL475_12635 PF00691 OmpA family AL475_12640 PF00158 Sigma-54 interaction domain AL475_12640 PF02954 Bacterial regulatory protein, Fis family AL475_12640 PF00072 Response regulator receiver domain AL475_12645 PF02049 Flagellar hook-basal body complex protein FliE AL475_12650 PF01514 Secretory protein of YscJ/FliF family AL475_12650 PF08345 Flagellar M-ring protein C-terminal AL475_12655 PF14842 FliG N-terminal domain AL475_12655 PF14841 FliG middle domain AL475_12655 PF01706 FliG C-terminal domain AL475_12665 PF18269 T3SS EscN ATPase C-terminal domain AL475_12665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL475_12675 PF00291 Pyridoxal-phosphate dependent enzyme AL475_12680 PF13404 AsnC-type helix-turn-helix domain AL475_12680 PF01037 Lrp/AsnC ligand binding domain AL475_12690 PF09619 Type III secretion system lipoprotein chaperone (YscW) AL475_12695 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL475_12705 PF00990 Diguanylate cyclase, GGDEF domain AL475_12705 PF13185 GAF domain AL475_12730 PF03358 NADPH-dependent FMN reductase AL475_12735 PF00892 EamA-like transporter family AL475_12745 PF00313 'Cold-shock' DNA-binding domain AL475_12770 PF00440 Bacterial regulatory proteins, tetR family AL475_12780 PF00694 Aconitase C-terminal domain AL475_12780 PF00330 Aconitase family (aconitate hydratase) AL475_12785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL475_12785 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL475_12790 PF01161 Phosphatidylethanolamine-binding protein AL475_12795 PF12833 Helix-turn-helix domain AL475_12815 PF09334 tRNA synthetases class I (M) AL475_12815 PF01588 Putative tRNA binding domain AL475_12825 PF00873 AcrB/AcrD/AcrF family AL475_12830 PF11604 Copper binding periplasmic protein CusF AL475_12845 PF08521 Two-component sensor kinase N-terminal AL475_12845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_12845 PF00512 His Kinase A (phospho-acceptor) domain AL475_12850 PF00486 Transcriptional regulatory protein, C terminal AL475_12850 PF00072 Response regulator receiver domain AL475_12855 PF01569 PAP2 superfamily AL475_12865 PF00271 Helicase conserved C-terminal domain AL475_12865 PF00270 DEAD/DEAH box helicase AL475_12870 PF00884 Sulfatase AL475_12875 PF01219 Prokaryotic diacylglycerol kinase AL475_12880 PF00884 Sulfatase AL475_12880 PF08019 Phosphoethanolamine transferase EptA/EptB AL475_12905 PF00072 Response regulator receiver domain AL475_12905 PF00196 Bacterial regulatory proteins, luxR family AL475_12910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_12910 PF00512 His Kinase A (phospho-acceptor) domain AL475_12915 PF13247 4Fe-4S dicluster domain AL475_12920 PF03916 Polysulphide reductase, NrfD AL475_12925 PF01568 Molydopterin dinucleotide binding domain AL475_12925 PF00384 Molybdopterin oxidoreductase AL475_12925 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL475_12930 PF00034 Cytochrome c AL475_12935 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL475_12945 PF00563 EAL domain AL475_12945 PF03707 Bacterial signalling protein N terminal repeat AL475_12945 PF00990 Diguanylate cyclase, GGDEF domain AL475_12950 PF00155 Aminotransferase class I and II AL475_12950 PF00392 Bacterial regulatory proteins, gntR family AL475_12955 PF01654 Cytochrome bd terminal oxidase subunit I AL475_12960 PF02322 Cytochrome bd terminal oxidase subunit II AL475_12995 PF00999 Sodium/hydrogen exchanger family AL475_12995 PF02254 TrkA-N domain AL475_13000 PF02525 Flavodoxin-like fold AL475_13005 PF07690 Major Facilitator Superfamily AL475_13010 PF00857 Isochorismatase family AL475_13010 PF00550 Phosphopantetheine attachment site AL475_13015 PF00501 AMP-binding enzyme AL475_13015 PF13193 AMP-binding enzyme C-terminal domain AL475_13020 PF00425 chorismate binding enzyme AL475_13030 PF00793 DAHP synthetase I family AL475_13035 PF00501 AMP-binding enzyme AL475_13035 PF00550 Phosphopantetheine attachment site AL475_13035 PF08242 Methyltransferase domain AL475_13035 PF00668 Condensation domain AL475_13040 PF13193 AMP-binding enzyme C-terminal domain AL475_13040 PF00501 AMP-binding enzyme AL475_13040 PF00668 Condensation domain AL475_13040 PF00550 Phosphopantetheine attachment site AL475_13045 PF00296 Luciferase-like monooxygenase AL475_13050 PF01497 Periplasmic binding protein AL475_13055 PF01032 FecCD transport family AL475_13060 PF01032 FecCD transport family AL475_13065 PF07715 TonB-dependent Receptor Plug Domain AL475_13075 PF00501 AMP-binding enzyme AL475_13075 PF13193 AMP-binding enzyme C-terminal domain AL475_13075 PF00668 Condensation domain AL475_13075 PF00550 Phosphopantetheine attachment site AL475_13075 PF00975 Thioesterase domain AL475_13080 PF00005 ABC transporter AL475_13090 PF00356 Bacterial regulatory proteins, lacI family AL475_13095 PF00232 Glycosyl hydrolase family 1 AL475_13100 PF17954 Quercetinase C-terminal cupin domain AL475_13100 PF02678 Pirin AL475_13105 PF02581 Thiamine monophosphate synthase AL475_13110 PF02110 Hydroxyethylthiazole kinase family AL475_13115 PF08543 Phosphomethylpyrimidine kinase AL475_13120 PF00005 ABC transporter AL475_13120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL475_13125 PF12911 N-terminal TM domain of oligopeptide transport permease C AL475_13125 PF00528 Binding-protein-dependent transport system inner membrane component AL475_13130 PF00528 Binding-protein-dependent transport system inner membrane component AL475_13135 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL475_13145 PF02321 Outer membrane efflux protein AL475_13150 PF00529 HlyD membrane-fusion protein of T1SS AL475_13150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_13155 PF07690 Major Facilitator Superfamily AL475_13160 PF12833 Helix-turn-helix domain AL475_13160 PF06445 GyrI-like small molecule binding domain AL475_13165 PF07715 TonB-dependent Receptor Plug Domain AL475_13165 PF00593 TonB dependent receptor AL475_13170 PF00486 Transcriptional regulatory protein, C terminal AL475_13170 PF00072 Response regulator receiver domain AL475_13175 PF00512 His Kinase A (phospho-acceptor) domain AL475_13175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_13180 PF00367 phosphotransferase system, EIIB AL475_13180 PF02378 Phosphotransferase system, EIIC AL475_13185 PF00356 Bacterial regulatory proteins, lacI family AL475_13190 PF08244 Glycosyl hydrolases family 32 C terminal AL475_13190 PF00251 Glycosyl hydrolases family 32 N-terminal domain AL475_13195 PF00563 EAL domain AL475_13195 PF00990 Diguanylate cyclase, GGDEF domain AL475_13195 PF13426 PAS domain AL475_13200 PF02264 LamB porin AL475_13200 PF11471 Maltoporin periplasmic N-terminal extension AL475_13205 PF00294 pfkB family carbohydrate kinase AL475_13215 PF02801 Beta-ketoacyl synthase, C-terminal domain AL475_13215 PF00109 Beta-ketoacyl synthase, N-terminal domain AL475_13230 PF02801 Beta-ketoacyl synthase, C-terminal domain AL475_13230 PF00109 Beta-ketoacyl synthase, N-terminal domain AL475_13255 PF00221 Aromatic amino acid lyase AL475_13260 PF00535 Glycosyl transferase family 2 AL475_13270 PF13193 AMP-binding enzyme C-terminal domain AL475_13270 PF00501 AMP-binding enzyme AL475_13280 PF00550 Phosphopantetheine attachment site AL475_13285 PF00550 Phosphopantetheine attachment site AL475_13310 PF04820 Tryptophan halogenase AL475_13315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL475_13320 PF00528 Binding-protein-dependent transport system inner membrane component AL475_13325 PF12911 N-terminal TM domain of oligopeptide transport permease C AL475_13325 PF00528 Binding-protein-dependent transport system inner membrane component AL475_13330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL475_13330 PF00005 ABC transporter AL475_13335 PF00005 ABC transporter AL475_13335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL475_13345 PF13409 Glutathione S-transferase, N-terminal domain AL475_13350 PF13194 Domain of unknown function (DUF4010) AL475_13355 PF07085 DRTGG domain AL475_13355 PF01515 Phosphate acetyl/butaryl transferase AL475_13360 PF00871 Acetokinase family AL475_13365 PF04217 Protein of unknown function, DUF412 AL475_13375 PF02653 Branched-chain amino acid transport system / permease component AL475_13380 PF00005 ABC transporter AL475_13385 PF05230 MASE2 domain AL475_13385 PF00990 Diguanylate cyclase, GGDEF domain AL475_13390 PF01207 Dihydrouridine synthase (Dus) AL475_13395 PF07963 Prokaryotic N-terminal methylation motif AL475_13395 PF00114 Pilin (bacterial filament) AL475_13400 PF01043 SecA preprotein cross-linking domain AL475_13400 PF07516 SecA Wing and Scaffold domain AL475_13400 PF02810 SEC-C motif AL475_13400 PF07517 SecA DEAD-like domain AL475_13405 PF03548 Outer membrane lipoprotein carrier protein LolA AL475_13410 PF00004 ATPase family associated with various cellular activities (AAA) AL475_13410 PF12002 MgsA AAA+ ATPase C terminal AL475_13410 PF16193 AAA C-terminal domain AL475_13415 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL475_13415 PF02403 Seryl-tRNA synthetase N-terminal domain AL475_13425 PF04324 BFD-like [2Fe-2S] binding domain AL475_13425 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL475_13425 PF00384 Molybdopterin oxidoreductase AL475_13425 PF01568 Molydopterin dinucleotide binding domain AL475_13430 PF10414 Sirohaem synthase dimerisation region AL475_13430 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL475_13430 PF14824 Sirohaem biosynthesis protein central AL475_13435 PF00591 Glycosyl transferase family, a/b domain AL475_13435 PF02885 Glycosyl transferase family, helical bundle domain AL475_13440 PF00072 Response regulator receiver domain AL475_13440 PF03861 ANTAR domain AL475_13445 PF00005 ABC transporter AL475_13450 PF00528 Binding-protein-dependent transport system inner membrane component AL475_13455 PF00005 ABC transporter AL475_13460 PF13806 Rieske-like [2Fe-2S] domain AL475_13460 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL475_13460 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL475_13460 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL475_13460 PF04324 BFD-like [2Fe-2S] binding domain AL475_13460 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_13470 PF00202 Aminotransferase class-III AL475_13475 PF06968 Biotin and Thiamin Synthesis associated domain AL475_13475 PF04055 Radical SAM superfamily AL475_13480 PF00155 Aminotransferase class I and II AL475_13485 PF08241 Methyltransferase domain AL475_13495 PF01435 Peptidase family M48 AL475_13540 PF00206 Lyase AL475_13540 PF08328 Adenylosuccinate lyase C-terminal AL475_13545 PF04356 Protein of unknown function (DUF489) AL475_13555 PF00294 pfkB family carbohydrate kinase AL475_13560 PF00816 H-NS histone family AL475_13565 PF03553 Na+/H+ antiporter family AL475_13570 PF00158 Sigma-54 interaction domain AL475_13570 PF00072 Response regulator receiver domain AL475_13570 PF02954 Bacterial regulatory protein, Fis family AL475_13575 PF01634 ATP phosphoribosyltransferase AL475_13575 PF08029 HisG, C-terminal domain AL475_13580 PF00815 Histidinol dehydrogenase AL475_13585 PF00155 Aminotransferase class I and II AL475_13590 PF00475 Imidazoleglycerol-phosphate dehydratase AL475_13590 PF08645 Polynucleotide kinase 3 phosphatase AL475_13595 PF00117 Glutamine amidotransferase class-I AL475_13600 PF00977 Histidine biosynthesis protein AL475_13605 PF00977 Histidine biosynthesis protein AL475_13610 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL475_13610 PF01502 Phosphoribosyl-AMP cyclohydrolase AL475_13615 PF00849 RNA pseudouridylate synthase AL475_13620 PF03971 Monomeric isocitrate dehydrogenase AL475_13625 PF00313 'Cold-shock' DNA-binding domain AL475_13630 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL475_13635 PF07724 AAA domain (Cdc48 subfamily) AL475_13635 PF10431 C-terminal, D2-small domain, of ClpB protein AL475_13635 PF02861 Clp amino terminal domain, pathogenicity island component AL475_13635 PF17871 AAA lid domain AL475_13635 PF00004 ATPase family associated with various cellular activities (AAA) AL475_13640 PF01176 Translation initiation factor 1A / IF-1 AL475_13645 PF04376 Arginine-tRNA-protein transferase, N terminus AL475_13645 PF04377 Arginine-tRNA-protein transferase, C terminus AL475_13650 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AL475_13660 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL475_13665 PF10692 Protein of unknown function (DUF2498) AL475_13670 PF01751 Toprim domain AL475_13670 PF01396 Topoisomerase DNA binding C4 zinc finger AL475_13670 PF01131 DNA topoisomerase AL475_13670 PF08272 Topoisomerase I zinc-ribbon-like AL475_13675 PF00072 Response regulator receiver domain AL475_13675 PF00990 Diguanylate cyclase, GGDEF domain AL475_13680 PF00483 Nucleotidyl transferase AL475_13685 PF00534 Glycosyl transferases group 1 AL475_13685 PF08323 Starch synthase catalytic domain AL475_13705 PF04994 TfoX C-terminal domain AL475_13705 PF04993 TfoX N-terminal domain AL475_13710 PF00356 Bacterial regulatory proteins, lacI family AL475_13715 PF02613 Nitrate reductase delta subunit AL475_13720 PF00486 Transcriptional regulatory protein, C terminal AL475_13720 PF00072 Response regulator receiver domain AL475_13725 PF02698 DUF218 domain AL475_13735 PF17192 MukF middle domain AL475_13735 PF03882 MukF winged-helix domain AL475_13735 PF17193 MukF C-terminal domain AL475_13740 PF04288 MukE-like family AL475_13745 PF04310 MukB N-terminal AL475_13745 PF16330 MukB hinge domain AL475_13750 PF08443 RimK-like ATP-grasp domain AL475_13750 PF18030 RimK PreATP-grasp domain AL475_13760 PF08443 RimK-like ATP-grasp domain AL475_13760 PF18030 RimK PreATP-grasp domain AL475_13765 PF08003 Protein of unknown function (DUF1698) AL475_13770 PF13649 Methyltransferase domain AL475_13780 PF00152 tRNA synthetases class II (D, K and N) AL475_13780 PF02938 GAD domain AL475_13780 PF01336 OB-fold nucleic acid binding domain AL475_13785 PF00265 Thymidine kinase AL475_13790 PF02698 DUF218 domain AL475_13795 PF01370 NAD dependent epimerase/dehydratase family AL475_13800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_13800 PF03466 LysR substrate binding domain AL475_13815 PF01226 Formate/nitrite transporter AL475_13820 PF03649 Uncharacterised protein family (UPF0014) AL475_13825 PF06796 Periplasmic nitrate reductase protein NapE AL475_13830 PF03264 NapC/NirT cytochrome c family, N-terminal region AL475_13835 PF00384 Molybdopterin oxidoreductase AL475_13835 PF18364 Molybdopterin oxidoreductase N-terminal domain AL475_13835 PF01568 Molydopterin dinucleotide binding domain AL475_13855 PF02833 DHHA2 domain AL475_13855 PF01368 DHH family AL475_13870 PF00005 ABC transporter AL475_13875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL475_13875 PF00005 ABC transporter AL475_13880 PF00528 Binding-protein-dependent transport system inner membrane component AL475_13880 PF12911 N-terminal TM domain of oligopeptide transport permease C AL475_13885 PF00528 Binding-protein-dependent transport system inner membrane component AL475_13890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL475_13895 PF02954 Bacterial regulatory protein, Fis family AL475_13895 PF00158 Sigma-54 interaction domain AL475_13900 PF04012 PspA/IM30 family AL475_13905 PF06667 Phage shock protein B AL475_13915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_13915 PF00529 HlyD membrane-fusion protein of T1SS AL475_13920 PF13533 Biotin-lipoyl like AL475_13925 PF00873 AcrB/AcrD/AcrF family AL475_13930 PF03352 Methyladenine glycosylase AL475_13930 PF13302 Acetyltransferase (GNAT) domain AL475_13930 PF13673 Acetyltransferase (GNAT) domain AL475_13930 PF00958 GMP synthase C terminal domain AL475_13930 PF00117 Glutamine amidotransferase class-I AL475_13945 PF11412 Disulphide bond corrector protein DsbC AL475_13945 PF02683 Cytochrome C biogenesis protein transmembrane region AL475_13960 PF01053 Cys/Met metabolism PLP-dependent enzyme AL475_13965 PF13396 Phospholipase_D-nuclease N-terminal AL475_13965 PF13091 PLD-like domain AL475_13970 PF00209 Sodium:neurotransmitter symporter family AL475_13975 PF10415 Fumarase C C-terminus AL475_13975 PF00206 Lyase AL475_13980 PF00873 AcrB/AcrD/AcrF family AL475_13990 PF00849 RNA pseudouridylate synthase AL475_14000 PF00701 Dihydrodipicolinate synthetase family AL475_14005 PF01066 CDP-alcohol phosphatidyltransferase AL475_14010 PF00005 ABC transporter AL475_14015 PF00528 Binding-protein-dependent transport system inner membrane component AL475_14020 PF13416 Bacterial extracellular solute-binding protein AL475_14030 PF06945 Protein of unknown function (DUF1289) AL475_14045 PF00005 ABC transporter AL475_14055 PF03222 Tryptophan/tyrosine permease family AL475_14070 PF17158 Membrane-associated sensor, integral membrane domain AL475_14070 PF00990 Diguanylate cyclase, GGDEF domain AL475_14075 PF01717 Cobalamin-independent synthase, Catalytic domain AL475_14085 PF00313 'Cold-shock' DNA-binding domain AL475_14095 PF02028 BCCT, betaine/carnitine/choline family transporter AL475_14100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_14100 PF03466 LysR substrate binding domain AL475_14105 PF00884 Sulfatase AL475_14110 PF13186 Iron-sulfur cluster-binding domain AL475_14110 PF04055 Radical SAM superfamily AL475_14115 PF17863 AAA lid domain AL475_14115 PF07726 ATPase family associated with various cellular activities (AAA) AL475_14130 PF00092 von Willebrand factor type A domain AL475_14150 PF01386 Ribosomal L25p family AL475_14155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_14155 PF00672 HAMP domain AL475_14155 PF00512 His Kinase A (phospho-acceptor) domain AL475_14160 PF00486 Transcriptional regulatory protein, C terminal AL475_14160 PF00072 Response regulator receiver domain AL475_14170 PF00271 Helicase conserved C-terminal domain AL475_14170 PF04851 Type III restriction enzyme, res subunit AL475_14175 PF00849 RNA pseudouridylate synthase AL475_14175 PF01479 S4 domain AL475_14180 PF07690 Major Facilitator Superfamily AL475_14190 PF11066 Protein of unknown function (DUF2867) AL475_14190 PF13460 NAD(P)H-binding AL475_14195 PF01554 MatE AL475_14200 PF00005 ABC transporter AL475_14215 PF06965 Na+/H+ antiporter 1 AL475_14220 PF00691 OmpA family AL475_14220 PF05736 OprF membrane domain AL475_14240 PF00202 Aminotransferase class-III AL475_14245 PF03435 Saccharopine dehydrogenase NADP binding domain AL475_14245 PF16653 Saccharopine dehydrogenase C-terminal domain AL475_14255 PF17200 Single Cache domain 2 AL475_14255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_14255 PF00672 HAMP domain AL475_14265 PF03480 Bacterial extracellular solute-binding protein, family 7 AL475_14275 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL475_14280 PF01202 Shikimate kinase AL475_14285 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL475_14285 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL475_14295 PF00994 Probable molybdopterin binding domain AL475_14305 PF00175 Oxidoreductase NAD-binding domain AL475_14305 PF00970 Oxidoreductase FAD-binding domain AL475_14305 PF00111 2Fe-2S iron-sulfur cluster binding domain AL475_14310 PF00268 Ribonucleotide reductase, small chain AL475_14315 PF02867 Ribonucleotide reductase, barrel domain AL475_14315 PF00317 Ribonucleotide reductase, all-alpha domain AL475_14315 PF03477 ATP cone domain AL475_14325 PF03989 DNA gyrase C-terminal domain, beta-propeller AL475_14325 PF00521 DNA gyrase/topoisomerase IV, subunit A AL475_14335 PF00925 GTP cyclohydrolase II AL475_14360 PF01471 Putative peptidoglycan binding domain AL475_14360 PF03734 L,D-transpeptidase catalytic domain AL475_14365 PF05951 Bacterial protein of unknown function (DUF882) AL475_14370 PF00753 Metallo-beta-lactamase superfamily AL475_14385 PF03480 Bacterial extracellular solute-binding protein, family 7 AL475_14395 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL475_14400 PF07730 Histidine kinase AL475_14400 PF17200 Single Cache domain 2 AL475_14405 PF00196 Bacterial regulatory proteins, luxR family AL475_14405 PF00072 Response regulator receiver domain AL475_14410 PF01047 MarR family AL475_14415 PF02028 BCCT, betaine/carnitine/choline family transporter AL475_14420 PF00672 HAMP domain AL475_14420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_14425 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL475_14425 PF00929 Exonuclease AL475_14425 PF02811 PHP domain AL475_14425 PF14579 Helix-hairpin-helix motif AL475_14425 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL475_14430 PF00478 IMP dehydrogenase / GMP reductase domain AL475_14430 PF00571 CBS domain AL475_14440 PF00155 Aminotransferase class I and II AL475_14455 PF01336 OB-fold nucleic acid binding domain AL475_14455 PF00152 tRNA synthetases class II (D, K and N) AL475_14460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_14460 PF17200 Single Cache domain 2 AL475_14460 PF00672 HAMP domain AL475_14465 PF01242 6-pyruvoyl tetrahydropterin synthase AL475_14470 PF02321 Outer membrane efflux protein AL475_14475 PF00005 ABC transporter AL475_14475 PF12704 MacB-like periplasmic core domain AL475_14475 PF02687 FtsX-like permease family AL475_14480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_14485 PF03315 Serine dehydratase beta chain AL475_14485 PF03313 Serine dehydratase alpha chain AL475_14490 PF03222 Tryptophan/tyrosine permease family AL475_14495 PF00293 NUDIX domain AL475_14505 PF00512 His Kinase A (phospho-acceptor) domain AL475_14505 PF09308 LuxQ, periplasmic AL475_14505 PF00072 Response regulator receiver domain AL475_14505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_14510 PF04715 Anthranilate synthase component I, N terminal region AL475_14510 PF00425 chorismate binding enzyme AL475_14525 PF04317 YcjX-like family, DUF463 AL475_14530 PF05128 Domain of unknown function (DUF697) AL475_14535 PF00158 Sigma-54 interaction domain AL475_14535 PF18024 Helix-turn-helix domain AL475_14540 PF13302 Acetyltransferase (GNAT) domain AL475_14555 PF00892 EamA-like transporter family AL475_14560 PF00939 Sodium:sulfate symporter transmembrane region AL475_14565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_14565 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL475_14565 PF00512 His Kinase A (phospho-acceptor) domain AL475_14570 PF00072 Response regulator receiver domain AL475_14570 PF00158 Sigma-54 interaction domain AL475_14570 PF02954 Bacterial regulatory protein, Fis family AL475_14575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_14575 PF03466 LysR substrate binding domain AL475_14580 PF03992 Antibiotic biosynthesis monooxygenase AL475_14585 PF00881 Nitroreductase family AL475_14590 PF04400 (Na+)-NQR maturation NqrM AL475_14600 PF00703 Glycosyl hydrolases family 2 AL475_14600 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL475_14600 PF02929 Beta galactosidase small chain AL475_14600 PF16353 Domain of unknown function(DUF4981) AL475_14600 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL475_14605 PF13407 Periplasmic binding protein domain AL475_14610 PF00005 ABC transporter AL475_14615 PF02653 Branched-chain amino acid transport system / permease component AL475_14625 PF01970 Tripartite tricarboxylate transporter TctA family AL475_14645 PF12833 Helix-turn-helix domain AL475_14645 PF02805 Metal binding domain of Ada AL475_14645 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL475_14645 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL475_14660 PF00285 Citrate synthase, C-terminal domain AL475_14665 PF00694 Aconitase C-terminal domain AL475_14665 PF00330 Aconitase family (aconitate hydratase) AL475_14670 PF04303 PrpF protein AL475_14675 PF00501 AMP-binding enzyme AL475_14675 PF13193 AMP-binding enzyme C-terminal domain AL475_14675 PF16177 Acetyl-coenzyme A synthetase N-terminus AL475_14685 PF00529 HlyD membrane-fusion protein of T1SS AL475_14685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_14690 PF07690 Major Facilitator Superfamily AL475_14705 PF07687 Peptidase dimerisation domain AL475_14705 PF01546 Peptidase family M20/M25/M40 AL475_14710 PF00563 EAL domain AL475_14710 PF12792 CSS motif domain associated with EAL AL475_14715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL475_14720 PF04209 homogentisate 1,2-dioxygenase AL475_14730 PF02798 Glutathione S-transferase, N-terminal domain AL475_14730 PF14497 Glutathione S-transferase, C-terminal domain AL475_14750 PF04074 YhcH/YjgK/YiaL AL475_14760 PF03009 Glycerophosphoryl diester phosphodiesterase family AL475_14765 PF00455 DeoR C terminal sensor domain AL475_14765 PF08220 DeoR-like helix-turn-helix domain AL475_14770 PF00005 ABC transporter AL475_14770 PF17912 MalK OB fold domain AL475_14775 PF00528 Binding-protein-dependent transport system inner membrane component AL475_14780 PF00528 Binding-protein-dependent transport system inner membrane component AL475_14785 PF13416 Bacterial extracellular solute-binding protein AL475_14795 PF00753 Metallo-beta-lactamase superfamily AL475_14800 PF08212 Lipocalin-like domain AL475_14810 PF01618 MotA/TolQ/ExbB proton channel family AL475_14815 PF01618 MotA/TolQ/ExbB proton channel family AL475_14820 PF02472 Biopolymer transport protein ExbD/TolR AL475_14825 PF03544 Gram-negative bacterial TonB protein C-terminal AL475_14840 PF01734 Patatin-like phospholipase AL475_14845 PF14743 DNA ligase OB-like domain AL475_14845 PF01068 ATP dependent DNA ligase domain AL475_14855 PF01554 MatE AL475_14860 PF00677 Lumazine binding domain AL475_14880 PF00877 NlpC/P60 family AL475_14885 PF02743 Cache domain AL475_14885 PF00672 HAMP domain AL475_14885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_14900 PF00480 ROK family AL475_14910 PF03453 MoeA N-terminal region (domain I and II) AL475_14910 PF03454 MoeA C-terminal region (domain IV) AL475_14910 PF00994 Probable molybdopterin binding domain AL475_14915 PF12804 MobA-like NTP transferase domain AL475_14920 PF08402 TOBE domain AL475_14920 PF00005 ABC transporter AL475_14925 PF00528 Binding-protein-dependent transport system inner membrane component AL475_14930 PF12849 PBP superfamily domain AL475_14935 PF00158 Sigma-54 interaction domain AL475_14935 PF00072 Response regulator receiver domain AL475_14935 PF02954 Bacterial regulatory protein, Fis family AL475_14940 PF00989 PAS fold AL475_14940 PF00512 His Kinase A (phospho-acceptor) domain AL475_14940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_14955 PF02634 FdhD/NarQ family AL475_14975 PF02613 Nitrate reductase delta subunit AL475_14985 PF01590 GAF domain AL475_14985 PF00158 Sigma-54 interaction domain AL475_14995 PF01546 Peptidase family M20/M25/M40 AL475_14995 PF07687 Peptidase dimerisation domain AL475_15000 PF07670 Nucleoside recognition AL475_15000 PF01773 Na+ dependent nucleoside transporter N-terminus AL475_15000 PF07662 Na+ dependent nucleoside transporter C-terminus AL475_15010 PF00128 Alpha amylase, catalytic domain AL475_15025 PF02743 Cache domain AL475_15025 PF00672 HAMP domain AL475_15025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_15030 PF17863 AAA lid domain AL475_15030 PF07726 ATPase family associated with various cellular activities (AAA) AL475_15035 PF01882 Protein of unknown function DUF58 AL475_15050 PF13519 von Willebrand factor type A domain AL475_15065 PF00990 Diguanylate cyclase, GGDEF domain AL475_15065 PF17158 Membrane-associated sensor, integral membrane domain AL475_15075 PF00072 Response regulator receiver domain AL475_15075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_15075 PF00512 His Kinase A (phospho-acceptor) domain AL475_15075 PF01627 Hpt domain AL475_15075 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL475_15075 PF00672 HAMP domain AL475_15080 PF00990 Diguanylate cyclase, GGDEF domain AL475_15080 PF00072 Response regulator receiver domain AL475_15085 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL475_15090 PF04996 Succinylarginine dihydrolase AL475_15095 PF00171 Aldehyde dehydrogenase family AL475_15100 PF04958 Arginine N-succinyltransferase beta subunit AL475_15105 PF04958 Arginine N-succinyltransferase beta subunit AL475_15110 PF00202 Aminotransferase class-III AL475_15115 PF12833 Helix-turn-helix domain AL475_15120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AL475_15120 PF13378 Enolase C-terminal domain-like AL475_15130 PF00528 Binding-protein-dependent transport system inner membrane component AL475_15135 PF00528 Binding-protein-dependent transport system inner membrane component AL475_15140 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL475_15145 PF03466 LysR substrate binding domain AL475_15145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_15170 PF04320 Protein with unknown function (DUF469) AL475_15175 PF00582 Universal stress protein family AL475_15180 PF00472 RF-1 domain AL475_15185 PF12843 Putative quorum-sensing-regulated virulence factor AL475_15195 PF01266 FAD dependent oxidoreductase AL475_15210 PF00072 Response regulator receiver domain AL475_15210 PF00158 Sigma-54 interaction domain AL475_15210 PF02954 Bacterial regulatory protein, Fis family AL475_15215 PF01238 Phosphomannose isomerase type I AL475_15220 PF02595 Glycerate kinase family AL475_15225 PF01074 Glycosyl hydrolases family 38 N-terminal domain AL475_15225 PF07748 Glycosyl hydrolases family 38 C-terminal domain AL475_15225 PF09261 Alpha mannosidase middle domain AL475_15230 PF02378 Phosphotransferase system, EIIC AL475_15230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL475_15230 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL475_15235 PF07702 UTRA domain AL475_15235 PF00392 Bacterial regulatory proteins, gntR family AL475_15240 PF00512 His Kinase A (phospho-acceptor) domain AL475_15240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_15240 PF02743 Cache domain AL475_15255 PF12729 Four helix bundle sensory module for signal transduction AL475_15255 PF00672 HAMP domain AL475_15255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_15260 PF00990 Diguanylate cyclase, GGDEF domain AL475_15260 PF13188 PAS domain AL475_15260 PF03707 Bacterial signalling protein N terminal repeat AL475_15260 PF00563 EAL domain AL475_15265 PF07690 Major Facilitator Superfamily AL475_15270 PF03009 Glycerophosphoryl diester phosphodiesterase family AL475_15275 PF01048 Phosphorylase superfamily AL475_15280 PF03466 LysR substrate binding domain AL475_15280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_15285 PF00356 Bacterial regulatory proteins, lacI family AL475_15290 PF00294 pfkB family carbohydrate kinase AL475_15295 PF13407 Periplasmic binding protein domain AL475_15300 PF02653 Branched-chain amino acid transport system / permease component AL475_15305 PF00005 ABC transporter AL475_15310 PF05025 RbsD / FucU transport protein family AL475_15330 PF16671 Actin cross-linking domain AL475_15330 PF04717 Type VI secretion system, phage-baseplate injector AL475_15360 PF10431 C-terminal, D2-small domain, of ClpB protein AL475_15360 PF17871 AAA lid domain AL475_15360 PF00004 ATPase family associated with various cellular activities (AAA) AL475_15360 PF07724 AAA domain (Cdc48 subfamily) AL475_15420 PF01037 Lrp/AsnC ligand binding domain AL475_15425 PF01810 LysE type translocator AL475_15430 PF01047 MarR family AL475_15435 PF01545 Cation efflux family AL475_15440 PF00892 EamA-like transporter family AL475_15445 PF00849 RNA pseudouridylate synthase AL475_15450 PF16925 Tetracyclin repressor-like, C-terminal domain AL475_15450 PF00440 Bacterial regulatory proteins, tetR family AL475_15455 PF00107 Zinc-binding dehydrogenase AL475_15455 PF16884 N-terminal domain of oxidoreductase AL475_15465 PF01740 STAS domain AL475_15465 PF00916 Sulfate permease family AL475_15470 PF13419 Haloacid dehalogenase-like hydrolase AL475_15475 PF00392 Bacterial regulatory proteins, gntR family AL475_15475 PF07702 UTRA domain AL475_15480 PF01547 Bacterial extracellular solute-binding protein AL475_15500 PF08402 TOBE domain AL475_15500 PF00005 ABC transporter AL475_15510 PF00563 EAL domain AL475_15510 PF12792 CSS motif domain associated with EAL AL475_15515 PF00248 Aldo/keto reductase family AL475_15520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL475_15525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_15525 PF03466 LysR substrate binding domain AL475_15530 PF07690 Major Facilitator Superfamily AL475_15550 PF00581 Rhodanese-like domain AL475_15565 PF01479 S4 domain AL475_15565 PF00579 tRNA synthetases class I (W and Y) AL475_15570 PF13649 Methyltransferase domain AL475_15575 PF03928 Haem-degrading AL475_15580 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL475_15580 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL475_15585 PF08220 DeoR-like helix-turn-helix domain AL475_15585 PF00455 DeoR C terminal sensor domain AL475_15590 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL475_15590 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL475_15605 PF12563 Hemolytic toxin N terminal AL475_15605 PF07968 Leukocidin/Hemolysin toxin family AL475_15605 PF16458 Beta-prism lectin AL475_15610 PF00657 GDSL-like Lipase/Acylhydrolase AL475_15620 PF03466 LysR substrate binding domain AL475_15620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_15630 PF00005 ABC transporter AL475_15635 PF01032 FecCD transport family AL475_15640 PF01032 FecCD transport family AL475_15645 PF01497 Periplasmic binding protein AL475_15650 PF07715 TonB-dependent Receptor Plug Domain AL475_15650 PF00593 TonB dependent receptor AL475_15675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_15675 PF00672 HAMP domain AL475_15680 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AL475_15685 PF03466 LysR substrate binding domain AL475_15685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_15695 PF02001 Protein of unknown function DUF134 AL475_15700 PF00881 Nitroreductase family AL475_15705 PF03466 LysR substrate binding domain AL475_15705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_15710 PF00155 Aminotransferase class I and II AL475_15715 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL475_15720 PF00892 EamA-like transporter family AL475_15725 PF00462 Glutaredoxin AL475_15735 PF07690 Major Facilitator Superfamily AL475_15740 PF03466 LysR substrate binding domain AL475_15740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_15745 PF00990 Diguanylate cyclase, GGDEF domain AL475_15745 PF00563 EAL domain AL475_15745 PF03707 Bacterial signalling protein N terminal repeat AL475_15745 PF13188 PAS domain AL475_15750 PF08525 Opacity-associated protein A N-terminal motif AL475_15750 PF01476 LysM domain AL475_15750 PF01551 Peptidase family M23 AL475_15765 PF01740 STAS domain AL475_15765 PF00916 Sulfate permease family AL475_15780 PF17152 Periplasmic sensor domain AL475_15780 PF00990 Diguanylate cyclase, GGDEF domain AL475_15785 PF00005 ABC transporter AL475_15790 PF00528 Binding-protein-dependent transport system inner membrane component AL475_15795 PF00528 Binding-protein-dependent transport system inner membrane component AL475_15800 PF12849 PBP superfamily domain AL475_15805 PF12729 Four helix bundle sensory module for signal transduction AL475_15805 PF00672 HAMP domain AL475_15805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_15810 PF00270 DEAD/DEAH box helicase AL475_15810 PF00271 Helicase conserved C-terminal domain AL475_15820 PF17969 L,D-transpeptidase C-terminal domain AL475_15820 PF01476 LysM domain AL475_15820 PF03734 L,D-transpeptidase catalytic domain AL475_15825 PF03441 FAD binding domain of DNA photolyase AL475_15825 PF00875 DNA photolyase AL475_15830 PF13411 MerR HTH family regulatory protein AL475_15835 PF08349 Protein of unknown function (DUF1722) AL475_15840 PF01048 Phosphorylase superfamily AL475_15855 PF00990 Diguanylate cyclase, GGDEF domain AL475_15860 PF11742 Protein of unknown function (DUF3302) AL475_15865 PF00529 HlyD membrane-fusion protein of T1SS AL475_15865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_15895 PF12945 Flagellar protein YcgR AL475_15895 PF07238 PilZ domain AL475_15900 PF03616 Sodium/glutamate symporter AL475_15915 PF02630 SCO1/SenC AL475_15925 PF03193 RsgA GTPase AL475_15930 PF00375 Sodium:dicarboxylate symporter family AL475_15940 PF07148 Maltose operon periplasmic protein precursor (MalM) AL475_15945 PF02264 LamB porin AL475_15950 PF00128 Alpha amylase, catalytic domain AL475_15950 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL475_15960 PF00005 ABC transporter AL475_15960 PF00664 ABC transporter transmembrane region AL475_15965 PF02899 Phage integrase, N-terminal SAM-like domain AL475_15965 PF00589 Phage integrase family AL475_15970 PF07669 Eco57I restriction-modification methylase AL475_15975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_15975 PF00183 Hsp90 protein AL475_16010 PF06892 Phage regulatory protein CII (CP76) AL475_16030 PF05840 Bacteriophage replication gene A protein (GPA) AL475_16170 PF04984 Phage tail sheath protein subtilisin-like domain AL475_16170 PF17482 Phage tail sheath C-terminal domain AL475_16205 PF01569 PAP2 superfamily AL475_16215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL475_16215 PF00384 Molybdopterin oxidoreductase AL475_16215 PF01568 Molydopterin dinucleotide binding domain AL475_16215 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL475_16215 PF12838 4Fe-4S dicluster domain AL475_16230 PF00672 HAMP domain AL475_16230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_16230 PF17200 Single Cache domain 2 AL475_16240 PF00005 ABC transporter AL475_16245 PF00392 Bacterial regulatory proteins, gntR family AL475_16245 PF07702 UTRA domain AL475_16250 PF00704 Glycosyl hydrolases family 18 AL475_16250 PF08329 Chitinase A, N-terminal domain AL475_16255 PF01212 Beta-eliminating lyase AL475_16260 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL475_16265 PF01966 HD domain AL475_16275 PF00939 Sodium:sulfate symporter transmembrane region AL475_16300 PF01124 MAPEG family AL475_16320 PF16671 Actin cross-linking domain AL475_16320 PF04717 Type VI secretion system, phage-baseplate injector AL475_16325 PF05638 Type VI secretion system effector, Hcp AL475_16330 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL475_16330 PF02806 Alpha amylase, C-terminal all-beta domain AL475_16330 PF00128 Alpha amylase, catalytic domain AL475_16335 PF02446 4-alpha-glucanotransferase AL475_16340 PF00343 Carbohydrate phosphorylase AL475_16345 PF00196 Bacterial regulatory proteins, luxR family AL475_16345 PF17874 MalT-like TPR region AL475_16350 PF10928 Protein of unknown function (DUF2810) AL475_16355 PF01040 UbiA prenyltransferase family AL475_16360 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AL475_16365 PF00510 Cytochrome c oxidase subunit III AL475_16370 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL475_16375 PF06481 COX Aromatic Rich Motif AL475_16375 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL475_16385 PF00672 HAMP domain AL475_16385 PF17200 Single Cache domain 2 AL475_16385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_16390 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL475_16390 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL475_16395 PF03466 LysR substrate binding domain AL475_16395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_16405 PF01709 Transcriptional regulator AL475_16430 PF18607 ParA helix turn helix domain AL475_16430 PF13614 AAA domain AL475_16435 PF08775 ParB family AL475_16435 PF02195 ParB-like nuclease domain AL475_16440 PF13416 Bacterial extracellular solute-binding protein AL475_16445 PF13718 GNAT acetyltransferase 2 AL475_16445 PF05127 Helicase AL475_16455 PF00072 Response regulator receiver domain AL475_16460 PF01584 CheW-like domain AL475_16460 PF02895 Signal transducing histidine kinase, homodimeric domain AL475_16460 PF09078 CheY binding AL475_16460 PF01627 Hpt domain AL475_16460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_16465 PF01584 CheW-like domain AL475_16470 PF01584 CheW-like domain AL475_16475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_16475 PF00672 HAMP domain AL475_16475 PF02203 Tar ligand binding domain homologue AL475_16480 PF01739 CheR methyltransferase, SAM binding domain AL475_16480 PF03705 CheR methyltransferase, all-alpha domain AL475_16485 PF03975 CheD chemotactic sensory transduction AL475_16490 PF00072 Response regulator receiver domain AL475_16490 PF01339 CheB methylesterase AL475_16495 PF00672 HAMP domain AL475_16495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_16495 PF02743 Cache domain AL475_16505 PF00072 Response regulator receiver domain AL475_16505 PF00486 Transcriptional regulatory protein, C terminal AL475_16515 PF00664 ABC transporter transmembrane region AL475_16515 PF00005 ABC transporter AL475_16515 PF03412 Peptidase C39 family AL475_16530 PF00529 HlyD membrane-fusion protein of T1SS AL475_16535 PF01243 Pyridoxamine 5'-phosphate oxidase AL475_16535 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL475_16540 PF00072 Response regulator receiver domain AL475_16540 PF00196 Bacterial regulatory proteins, luxR family AL475_16545 PF03781 Sulfatase-modifying factor enzyme 1 AL475_16555 PF12833 Helix-turn-helix domain AL475_16560 PF14850 DNA-binding domain of Proline dehydrogenase AL475_16560 PF01619 Proline dehydrogenase AL475_16560 PF00171 Aldehyde dehydrogenase family AL475_16560 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL475_16570 PF00474 Sodium:solute symporter family AL475_16580 PF00672 HAMP domain AL475_16580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_16585 PF01037 Lrp/AsnC ligand binding domain AL475_16590 PF00171 Aldehyde dehydrogenase family AL475_16595 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL475_16600 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL475_16605 PF00271 Helicase conserved C-terminal domain AL475_16605 PF00270 DEAD/DEAH box helicase AL475_16615 PF03466 LysR substrate binding domain AL475_16615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_16620 PF08241 Methyltransferase domain AL475_16630 PF00376 MerR family regulatory protein AL475_16630 PF09278 MerR, DNA binding AL475_16635 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AL475_16640 PF00266 Aminotransferase class-V AL475_16645 PF01037 Lrp/AsnC ligand binding domain AL475_16650 PF02447 GntP family permease AL475_16655 PF01261 Xylose isomerase-like TIM barrel AL475_16660 PF00596 Class II Aldolase and Adducin N-terminal domain AL475_16665 PF17042 Nucleotide-binding C-terminal domain AL475_16665 PF07005 Sugar-binding N-terminal domain AL475_16670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL475_16670 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL475_16675 PF08220 DeoR-like helix-turn-helix domain AL475_16675 PF00455 DeoR C terminal sensor domain AL475_16680 PF13426 PAS domain AL475_16680 PF08447 PAS fold AL475_16680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_16685 PF01266 FAD dependent oxidoreductase AL475_16690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_16690 PF03466 LysR substrate binding domain AL475_16695 PF13460 NAD(P)H-binding AL475_16700 PF00893 Small Multidrug Resistance protein AL475_16705 PF12833 Helix-turn-helix domain AL475_16705 PF02311 AraC-like ligand binding domain AL475_16710 PF00857 Isochorismatase family AL475_16715 PF12833 Helix-turn-helix domain AL475_16730 PF03992 Antibiotic biosynthesis monooxygenase AL475_16735 PF03733 Inner membrane component domain AL475_16745 PF00392 Bacterial regulatory proteins, gntR family AL475_16745 PF00155 Aminotransferase class I and II AL475_16775 PF03466 LysR substrate binding domain AL475_16775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_16780 PF00106 short chain dehydrogenase AL475_16795 PF13599 Pentapeptide repeats (9 copies) AL475_16800 PF01844 HNH endonuclease AL475_16820 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL475_16830 PF00132 Bacterial transferase hexapeptide (six repeats) AL475_16835 PF14579 Helix-hairpin-helix motif AL475_16835 PF02811 PHP domain AL475_16835 PF00929 Exonuclease AL475_16835 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL475_16835 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL475_16855 PF00012 Hsp70 protein AL475_16860 PF03099 Biotin/lipoate A/B protein ligase family AL475_16860 PF10437 Bacterial lipoate protein ligase C-terminus AL475_16870 PF03466 LysR substrate binding domain AL475_16870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_16875 PF03806 AbgT putative transporter family AL475_16880 PF07687 Peptidase dimerisation domain AL475_16880 PF01546 Peptidase family M20/M25/M40 AL475_16890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL475_16895 PF05068 Mannitol repressor AL475_16900 PF01232 Mannitol dehydrogenase Rossmann domain AL475_16900 PF08125 Mannitol dehydrogenase C-terminal domain AL475_16905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL475_16905 PF02378 Phosphotransferase system, EIIC AL475_16905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL475_16915 PF01551 Peptidase family M23 AL475_16915 PF04225 Opacity-associated protein A LysM-like domain AL475_16925 PF04389 Peptidase family M28 AL475_16925 PF02225 PA domain AL475_16930 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL475_16950 PF03466 LysR substrate binding domain AL475_16950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_16955 PF07969 Amidohydrolase family AL475_16960 PF07681 DoxX AL475_16965 PF06029 AlkA N-terminal domain AL475_16965 PF00730 HhH-GPD superfamily base excision DNA repair protein AL475_16970 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL475_16970 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL475_16980 PF03600 Citrate transporter AL475_16985 PF00375 Sodium:dicarboxylate symporter family AL475_17015 PF00561 alpha/beta hydrolase fold AL475_17025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_17025 PF00529 HlyD membrane-fusion protein of T1SS AL475_17030 PF01047 MarR family AL475_17040 PF02566 OsmC-like protein AL475_17045 PF01047 MarR family AL475_17050 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL475_17070 PF01810 LysE type translocator AL475_17080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL475_17085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL475_17085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL475_17085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL475_17085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL475_17090 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL475_17090 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AL475_17095 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL475_17100 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AL475_17105 PF00510 Cytochrome c oxidase subunit III AL475_17125 PF02628 Cytochrome oxidase assembly protein AL475_17130 PF01040 UbiA prenyltransferase family AL475_17135 PF12706 Beta-lactamase superfamily domain AL475_17145 PF00793 DAHP synthetase I family AL475_17150 PF01554 MatE AL475_17155 PF05231 MASE1 AL475_17155 PF13426 PAS domain AL475_17155 PF00990 Diguanylate cyclase, GGDEF domain AL475_17155 PF08448 PAS fold AL475_17155 PF08447 PAS fold AL475_17155 PF00563 EAL domain AL475_17175 PF12833 Helix-turn-helix domain AL475_17185 PF02567 Phenazine biosynthesis-like protein AL475_17195 PF00392 Bacterial regulatory proteins, gntR family AL475_17195 PF00155 Aminotransferase class I and II AL475_17200 PF00892 EamA-like transporter family AL475_17205 PF07690 Major Facilitator Superfamily AL475_17210 PF14497 Glutathione S-transferase, C-terminal domain AL475_17210 PF02798 Glutathione S-transferase, N-terminal domain AL475_17215 PF03737 Aldolase/RraA AL475_17225 PF01361 Tautomerase enzyme AL475_17240 PF03466 LysR substrate binding domain AL475_17240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_17265 PF05656 Protein of unknown function (DUF805) AL475_17280 PF00291 Pyridoxal-phosphate dependent enzyme AL475_17285 PF02627 Carboxymuconolactone decarboxylase family AL475_17295 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL475_17295 PF02896 PEP-utilising enzyme, TIM barrel domain AL475_17295 PF00391 PEP-utilising enzyme, mobile domain AL475_17300 PF03618 Kinase/pyrophosphorylase AL475_17310 PF01070 FMN-dependent dehydrogenase AL475_17315 PF02652 L-lactate permease AL475_17325 PF03466 LysR substrate binding domain AL475_17325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_17330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL475_17330 PF00005 ABC transporter AL475_17340 PF05362 Lon protease (S16) C-terminal proteolytic domain AL475_17340 PF13654 AAA domain AL475_17345 PF00672 HAMP domain AL475_17345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_17345 PF17200 Single Cache domain 2 AL475_17350 PF07690 Major Facilitator Superfamily AL475_17355 PF00924 Mechanosensitive ion channel AL475_17360 PF02080 TrkA-C domain AL475_17360 PF02254 TrkA-N domain AL475_17365 PF02386 Cation transport protein AL475_17380 PF06865 Pyrimidine/purine nucleoside phosphorylase AL475_17390 PF07690 Major Facilitator Superfamily AL475_17400 PF04717 Type VI secretion system, phage-baseplate injector AL475_17400 PF16671 Actin cross-linking domain AL475_17460 PF00004 ATPase family associated with various cellular activities (AAA) AL475_17460 PF07724 AAA domain (Cdc48 subfamily) AL475_17460 PF17871 AAA lid domain AL475_17460 PF10431 C-terminal, D2-small domain, of ClpB protein AL475_17505 PF00486 Transcriptional regulatory protein, C terminal AL475_17505 PF00072 Response regulator receiver domain AL475_17510 PF02678 Pirin AL475_17510 PF05726 Pirin C-terminal cupin domain AL475_17525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_17525 PF03466 LysR substrate binding domain AL475_17545 PF07694 5TMR of 5TMR-LYT AL475_17545 PF00990 Diguanylate cyclase, GGDEF domain AL475_17565 PF00990 Diguanylate cyclase, GGDEF domain AL475_17575 PF01047 MarR family AL475_17580 PF04237 YjbR AL475_17585 PF01584 CheW-like domain AL475_17585 PF00072 Response regulator receiver domain AL475_17615 PF08502 LeuA allosteric (dimerisation) domain AL475_17615 PF00682 HMGL-like AL475_17625 PF00440 Bacterial regulatory proteins, tetR family AL475_17630 PF00892 EamA-like transporter family AL475_17635 PF01037 Lrp/AsnC ligand binding domain AL475_17640 PF00196 Bacterial regulatory proteins, luxR family AL475_17645 PF01906 Putative heavy-metal-binding AL475_17650 PF14583 Oligogalacturonate lyase AL475_17655 PF00474 Sodium:solute symporter family AL475_17660 PF01554 MatE AL475_17665 PF06917 Periplasmic pectate lyase AL475_17670 PF13416 Bacterial extracellular solute-binding protein AL475_17675 PF00005 ABC transporter AL475_17675 PF17912 MalK OB fold domain AL475_17675 PF03459 TOBE domain AL475_17680 PF00528 Binding-protein-dependent transport system inner membrane component AL475_17685 PF00528 Binding-protein-dependent transport system inner membrane component AL475_17695 PF13229 Right handed beta helix region AL475_17700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_17700 PF00672 HAMP domain AL475_17700 PF12729 Four helix bundle sensory module for signal transduction AL475_17705 PF01095 Pectinesterase AL475_17710 PF01081 KDPG and KHG aldolase AL475_17715 PF00294 pfkB family carbohydrate kinase AL475_17730 PF07883 Cupin domain AL475_17735 PF10688 Bacterial inner membrane protein AL475_17745 PF01614 Bacterial transcriptional regulator AL475_17745 PF09339 IclR helix-turn-helix domain AL475_17750 PF00571 CBS domain AL475_17770 PF13302 Acetyltransferase (GNAT) domain AL475_17780 PF00155 Aminotransferase class I and II AL475_17780 PF00392 Bacterial regulatory proteins, gntR family AL475_17790 PF03783 Curli production assembly/transport component CsgG AL475_17795 PF10614 Type VIII secretion system (T8SS), CsgF protein AL475_17820 PF00005 ABC transporter AL475_17820 PF08402 TOBE domain AL475_17825 PF01547 Bacterial extracellular solute-binding protein AL475_17830 PF14785 Maltose transport system permease protein MalF P2 domain AL475_17830 PF00528 Binding-protein-dependent transport system inner membrane component AL475_17835 PF00528 Binding-protein-dependent transport system inner membrane component AL475_17850 PF00765 Autoinducer synthase AL475_17855 PF00196 Bacterial regulatory proteins, luxR family AL475_17855 PF03472 Autoinducer binding domain AL475_17860 PF08220 DeoR-like helix-turn-helix domain AL475_17860 PF00455 DeoR C terminal sensor domain AL475_17880 PF05661 Protein of unknown function (DUF808) AL475_17885 PF05958 tRNA (Uracil-5-)-methyltransferase AL475_17890 PF01979 Amidohydrolase family AL475_17900 PF00111 2Fe-2S iron-sulfur cluster binding domain AL475_17900 PF03476 MOSC N-terminal beta barrel domain AL475_17900 PF03473 MOSC domain AL475_17930 PF00005 ABC transporter AL475_17935 PF01032 FecCD transport family AL475_17945 PF02472 Biopolymer transport protein ExbD/TolR AL475_17950 PF01618 MotA/TolQ/ExbB proton channel family AL475_17955 PF03544 Gram-negative bacterial TonB protein C-terminal AL475_17960 PF06228 Haem utilisation ChuX/HutX AL475_17965 PF01243 Pyridoxamine 5'-phosphate oxidase AL475_17970 PF02743 Cache domain AL475_17970 PF00672 HAMP domain AL475_17970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_17975 PF13520 Amino acid permease AL475_17980 PF01037 Lrp/AsnC ligand binding domain AL475_17980 PF13404 AsnC-type helix-turn-helix domain AL475_17990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_17990 PF03466 LysR substrate binding domain AL475_18010 PF00970 Oxidoreductase FAD-binding domain AL475_18010 PF00175 Oxidoreductase NAD-binding domain AL475_18010 PF00111 2Fe-2S iron-sulfur cluster binding domain AL475_18015 PF00563 EAL domain AL475_18015 PF12792 CSS motif domain associated with EAL AL475_18025 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL475_18025 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL475_18040 PF00072 Response regulator receiver domain AL475_18040 PF01627 Hpt domain AL475_18040 PF00512 His Kinase A (phospho-acceptor) domain AL475_18040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_18040 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL475_18040 PF00672 HAMP domain AL475_18045 PF00563 EAL domain AL475_18045 PF03707 Bacterial signalling protein N terminal repeat AL475_18045 PF00990 Diguanylate cyclase, GGDEF domain AL475_18050 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL475_18060 PF02566 OsmC-like protein AL475_18070 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AL475_18070 PF14602 Hexapeptide repeat of succinyl-transferase AL475_18070 PF00132 Bacterial transferase hexapeptide (six repeats) AL475_18075 PF00892 EamA-like transporter family AL475_18090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_18090 PF03466 LysR substrate binding domain AL475_18105 PF00501 AMP-binding enzyme AL475_18125 PF00072 Response regulator receiver domain AL475_18125 PF00486 Transcriptional regulatory protein, C terminal AL475_18130 PF00512 His Kinase A (phospho-acceptor) domain AL475_18130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_18130 PF08521 Two-component sensor kinase N-terminal AL475_18135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_18135 PF03466 LysR substrate binding domain AL475_18140 PF00501 AMP-binding enzyme AL475_18140 PF13193 AMP-binding enzyme C-terminal domain AL475_18145 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL475_18150 PF01329 Pterin 4 alpha carbinolamine dehydratase AL475_18155 PF01554 MatE AL475_18165 PF03741 Integral membrane protein TerC family AL475_18175 PF00583 Acetyltransferase (GNAT) family AL475_18180 PF00202 Aminotransferase class-III AL475_18185 PF06339 Ectoine synthase AL475_18190 PF00696 Amino acid kinase family AL475_18190 PF13840 ACT domain AL475_18205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_18205 PF03466 LysR substrate binding domain AL475_18215 PF11849 Domain of unknown function (DUF3369) AL475_18220 PF00563 EAL domain AL475_18220 PF00990 Diguanylate cyclase, GGDEF domain AL475_18220 PF03707 Bacterial signalling protein N terminal repeat AL475_18225 PF00490 Delta-aminolevulinic acid dehydratase AL475_18235 PF00118 TCP-1/cpn60 chaperonin family AL475_18240 PF00166 Chaperonin 10 Kd subunit AL475_18245 PF01769 Divalent cation transporter AL475_18245 PF00571 CBS domain AL475_18245 PF03448 MgtE intracellular N domain AL475_18255 PF00672 HAMP domain AL475_18255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_18255 PF02743 Cache domain AL475_18265 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL475_18270 PF00528 Binding-protein-dependent transport system inner membrane component AL475_18275 PF00571 CBS domain AL475_18275 PF00005 ABC transporter AL475_18285 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL475_18285 PF17944 Arginine decarboxylase C-terminal helical extension AL475_18285 PF17810 Arginine decarboxylase helical bundle domain AL475_18290 PF00491 Arginase family AL475_18295 PF01037 Lrp/AsnC ligand binding domain AL475_18300 PF01053 Cys/Met metabolism PLP-dependent enzyme AL475_18305 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL475_18310 PF00528 Binding-protein-dependent transport system inner membrane component AL475_18315 PF00005 ABC transporter AL475_18320 PF07943 Penicillin-binding protein 5, C-terminal domain AL475_18320 PF00768 D-alanyl-D-alanine carboxypeptidase AL475_18335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_18335 PF00529 HlyD membrane-fusion protein of T1SS AL475_18345 PF00194 Eukaryotic-type carbonic anhydrase AL475_18355 PF00119 ATP synthase A chain AL475_18360 PF00137 ATP synthase subunit C AL475_18365 PF00430 ATP synthase B/B' CF(0) AL475_18370 PF00213 ATP synthase delta (OSCP) subunit AL475_18375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL475_18375 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL475_18375 PF00306 ATP synthase alpha/beta chain, C terminal domain AL475_18380 PF00231 ATP synthase AL475_18385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL475_18385 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL475_18390 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL475_18390 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL475_18395 PF03060 Nitronate monooxygenase AL475_18400 PF01810 LysE type translocator AL475_18405 PF00270 DEAD/DEAH box helicase AL475_18405 PF00271 Helicase conserved C-terminal domain AL475_18410 PF00072 Response regulator receiver domain AL475_18410 PF00158 Sigma-54 interaction domain AL475_18410 PF02954 Bacterial regulatory protein, Fis family AL475_18415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_18415 PF00512 His Kinase A (phospho-acceptor) domain AL475_18420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_18420 PF00672 HAMP domain AL475_18430 PF08267 Cobalamin-independent synthase, N-terminal domain AL475_18430 PF01717 Cobalamin-independent synthase, Catalytic domain AL475_18435 PF06826 Predicted Permease Membrane Region AL475_18435 PF02080 TrkA-C domain AL475_18440 PF00132 Bacterial transferase hexapeptide (six repeats) AL475_18445 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL475_18445 PF02558 Ketopantoate reductase PanE/ApbA AL475_18465 PF01810 LysE type translocator AL475_18500 PF09350 Domain of unknown function (DUF1992) AL475_18510 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AL475_18515 PF02253 Phospholipase A1 AL475_18530 PF02347 Glycine cleavage system P-protein AL475_18535 PF01597 Glycine cleavage H-protein AL475_18540 PF00464 Serine hydroxymethyltransferase AL475_18550 PF01571 Aminomethyltransferase folate-binding domain AL475_18550 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL475_18560 PF00990 Diguanylate cyclase, GGDEF domain AL475_18560 PF17158 Membrane-associated sensor, integral membrane domain AL475_18565 PF08448 PAS fold AL475_18565 PF08447 PAS fold AL475_18565 PF00990 Diguanylate cyclase, GGDEF domain AL475_18565 PF00563 EAL domain AL475_18570 PF00294 pfkB family carbohydrate kinase AL475_18585 PF13419 Haloacid dehalogenase-like hydrolase AL475_18610 PF00226 DnaJ domain AL475_18610 PF01556 DnaJ C terminal domain AL475_18610 PF00684 DnaJ central domain AL475_18620 PF00990 Diguanylate cyclase, GGDEF domain AL475_18620 PF00498 FHA domain AL475_18620 PF00563 EAL domain AL475_18625 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL475_18625 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL475_18625 PF07055 Enoyl reductase FAD binding domain AL475_18630 PF13472 GDSL-like Lipase/Acylhydrolase family AL475_18635 PF00005 ABC transporter AL475_18650 PF02626 Carboxyltransferase domain, subdomain A and B AL475_18660 PF03746 LamB/YcsF family AL475_18665 PF05231 MASE1 AL475_18665 PF00563 EAL domain AL475_18665 PF00990 Diguanylate cyclase, GGDEF domain AL475_18665 PF13426 PAS domain AL475_18665 PF08448 PAS fold AL475_18665 PF08447 PAS fold AL475_18670 PF16363 GDP-mannose 4,6 dehydratase AL475_18675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_18675 PF00672 HAMP domain AL475_18675 PF12729 Four helix bundle sensory module for signal transduction AL475_18680 PF03222 Tryptophan/tyrosine permease family AL475_18685 PF04336 Acyl carrier protein phosphodiesterase AL475_18690 PF00270 DEAD/DEAH box helicase AL475_18690 PF00271 Helicase conserved C-terminal domain AL475_18695 PF00440 Bacterial regulatory proteins, tetR family AL475_18695 PF08361 MAATS-type transcriptional repressor, C-terminal region AL475_18700 PF00034 Cytochrome c AL475_18705 PF01212 Beta-eliminating lyase AL475_18710 PF00293 NUDIX domain AL475_18715 PF12592 Protein of unknown function (DUF3763) AL475_18715 PF17868 AAA lid domain AL475_18715 PF07728 AAA domain (dynein-related subfamily) AL475_18720 PF05762 VWA domain containing CoxE-like protein AL475_18735 PF07715 TonB-dependent Receptor Plug Domain AL475_18735 PF07660 Secretin and TonB N terminus short domain AL475_18735 PF00593 TonB dependent receptor AL475_18750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_18750 PF00672 HAMP domain AL475_18750 PF16591 Helical bimodular sensor domain AL475_18760 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AL475_18770 PF00535 Glycosyl transferase family 2 AL475_18780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_18780 PF03466 LysR substrate binding domain AL475_18785 PF00892 EamA-like transporter family AL475_18790 PF02311 AraC-like ligand binding domain AL475_18790 PF12833 Helix-turn-helix domain AL475_18815 PF16200 C-terminal region of band_7 AL475_18815 PF01145 SPFH domain / Band 7 family AL475_18825 PF00296 Luciferase-like monooxygenase AL475_18830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_18830 PF03466 LysR substrate binding domain AL475_18840 PF02634 FdhD/NarQ family AL475_18845 PF03466 LysR substrate binding domain AL475_18845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_18850 PF01062 Bestrophin, RFP-TM, chloride channel AL475_18855 PF00384 Molybdopterin oxidoreductase AL475_18860 PF01654 Cytochrome bd terminal oxidase subunit I AL475_18865 PF02322 Cytochrome bd terminal oxidase subunit II AL475_18870 PF01081 KDPG and KHG aldolase AL475_18875 PF00294 pfkB family carbohydrate kinase AL475_18880 PF02614 Glucuronate isomerase AL475_18885 PF01232 Mannitol dehydrogenase Rossmann domain AL475_18885 PF08125 Mannitol dehydrogenase C-terminal domain AL475_18890 PF17137 Domain of unknown function (DUF5110) AL475_18890 PF16338 Domain of unknown function (DUF4968) AL475_18890 PF13802 Galactose mutarotase-like AL475_18890 PF01055 Glycosyl hydrolases family 31 AL475_18895 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL475_18900 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL475_18905 PF03480 Bacterial extracellular solute-binding protein, family 7 AL475_18910 PF07729 FCD domain AL475_18910 PF00392 Bacterial regulatory proteins, gntR family AL475_18915 PF03786 D-mannonate dehydratase (UxuA) AL475_18920 PF04198 Putative sugar-binding domain AL475_18920 PF00325 Bacterial regulatory proteins, crp family AL475_18925 PF01232 Mannitol dehydrogenase Rossmann domain AL475_18925 PF08125 Mannitol dehydrogenase C-terminal domain AL475_18930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL475_18930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL475_18935 PF07690 Major Facilitator Superfamily AL475_18940 PF13419 Haloacid dehalogenase-like hydrolase AL475_18945 PF00881 Nitroreductase family AL475_18950 PF03466 LysR substrate binding domain AL475_18950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_18955 PF00842 Alanine racemase, C-terminal domain AL475_18955 PF01168 Alanine racemase, N-terminal domain AL475_18960 PF00672 HAMP domain AL475_18960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_18965 PF00005 ABC transporter AL475_18970 PF01497 Periplasmic binding protein AL475_18975 PF01032 FecCD transport family AL475_18985 PF07715 TonB-dependent Receptor Plug Domain AL475_18985 PF00593 TonB dependent receptor AL475_19005 PF02028 BCCT, betaine/carnitine/choline family transporter AL475_19030 PF04324 BFD-like [2Fe-2S] binding domain AL475_19030 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL475_19030 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL475_19030 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_19030 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL475_19035 PF13806 Rieske-like [2Fe-2S] domain AL475_19045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL475_19045 PF10414 Sirohaem synthase dimerisation region AL475_19045 PF14824 Sirohaem biosynthesis protein central AL475_19065 PF11756 Nitrous oxide-stimulated promoter AL475_19070 PF07690 Major Facilitator Superfamily AL475_19075 PF00085 Thioredoxin AL475_19080 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL475_19080 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL475_19085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_19090 PF00873 AcrB/AcrD/AcrF family AL475_19095 PF02397 Bacterial sugar transferase AL475_19105 PF10531 SLBB domain AL475_19105 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL475_19105 PF02563 Polysaccharide biosynthesis/export protein AL475_19130 PF00534 Glycosyl transferases group 1 AL475_19130 PF13439 Glycosyltransferase Family 4 AL475_19135 PF00534 Glycosyl transferases group 1 AL475_19135 PF13439 Glycosyltransferase Family 4 AL475_19145 PF08532 Beta-galactosidase trimerisation domain AL475_19145 PF08533 Beta-galactosidase C-terminal domain AL475_19145 PF02449 Beta-galactosidase AL475_19150 PF02754 Cysteine-rich domain AL475_19150 PF13183 4Fe-4S dicluster domain AL475_19155 PF00890 FAD binding domain AL475_19160 PF01266 FAD dependent oxidoreductase AL475_19160 PF04324 BFD-like [2Fe-2S] binding domain AL475_19165 PF00230 Major intrinsic protein AL475_19170 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL475_19170 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL475_19175 PF10688 Bacterial inner membrane protein AL475_19220 PF04984 Phage tail sheath protein subtilisin-like domain AL475_19220 PF17482 Phage tail sheath C-terminal domain AL475_19290 PF13302 Acetyltransferase (GNAT) domain AL475_19320 PF00132 Bacterial transferase hexapeptide (six repeats) AL475_19385 PF05840 Bacteriophage replication gene A protein (GPA) AL475_19405 PF06892 Phage regulatory protein CII (CP76) AL475_19430 PF04245 37-kD nucleoid-associated bacterial protein AL475_19455 PF02899 Phage integrase, N-terminal SAM-like domain AL475_19455 PF00589 Phage integrase family AL475_19460 PF04363 Protein of unknown function (DUF496) AL475_19470 PF04337 Protein of unknown function, DUF480 AL475_19475 PF01541 GIY-YIG catalytic domain AL475_19485 PF13407 Periplasmic binding protein domain AL475_19490 PF09308 LuxQ, periplasmic AL475_19490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_19490 PF00512 His Kinase A (phospho-acceptor) domain AL475_19490 PF00072 Response regulator receiver domain AL475_19510 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL475_19510 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL475_19520 PF00528 Binding-protein-dependent transport system inner membrane component AL475_19525 PF00005 ABC transporter AL475_19525 PF03459 TOBE domain AL475_19540 PF12805 FUSC-like inner membrane protein yccS AL475_19545 PF00664 ABC transporter transmembrane region AL475_19545 PF03412 Peptidase C39 family AL475_19545 PF00005 ABC transporter AL475_19560 PF00529 HlyD membrane-fusion protein of T1SS AL475_19565 PF05736 OprF membrane domain AL475_19565 PF00691 OmpA family AL475_19580 PF12462 DNA helicase IV / RNA helicase N terminal AL475_19580 PF13361 UvrD-like helicase C-terminal domain AL475_19580 PF00580 UvrD/REP helicase N-terminal domain AL475_19585 PF00857 Isochorismatase family AL475_19590 PF02142 MGS-like domain AL475_19595 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL475_19600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_19600 PF01627 Hpt domain AL475_19600 PF00072 Response regulator receiver domain AL475_19600 PF00672 HAMP domain AL475_19600 PF00512 His Kinase A (phospho-acceptor) domain AL475_19605 PF00224 Pyruvate kinase, barrel domain AL475_19605 PF02887 Pyruvate kinase, alpha/beta domain AL475_19610 PF07690 Major Facilitator Superfamily AL475_19620 PF00512 His Kinase A (phospho-acceptor) domain AL475_19620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_19620 PF00672 HAMP domain AL475_19625 PF02954 Bacterial regulatory protein, Fis family AL475_19625 PF00072 Response regulator receiver domain AL475_19625 PF14532 Sigma-54 interaction domain AL475_19635 PF00465 Iron-containing alcohol dehydrogenase AL475_19640 PF12833 Helix-turn-helix domain AL475_19640 PF06719 AraC-type transcriptional regulator N-terminus AL475_19645 PF06483 Chitinase C AL475_19645 PF00704 Glycosyl hydrolases family 18 AL475_19655 PF00483 Nucleotidyl transferase AL475_19660 PF05230 MASE2 domain AL475_19660 PF00990 Diguanylate cyclase, GGDEF domain AL475_19680 PF13721 SecD export protein N-terminal TM region AL475_19680 PF07549 SecD/SecF GG Motif AL475_19680 PF02355 Protein export membrane protein AL475_19685 PF07549 SecD/SecF GG Motif AL475_19685 PF02355 Protein export membrane protein AL475_19690 PF00106 short chain dehydrogenase AL475_19695 PF00108 Thiolase, N-terminal domain AL475_19695 PF02803 Thiolase, C-terminal domain AL475_19705 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL475_19705 PF00561 alpha/beta hydrolase fold AL475_19725 PF03264 NapC/NirT cytochrome c family, N-terminal region AL475_19730 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL475_19735 PF00384 Molybdopterin oxidoreductase AL475_19735 PF01568 Molydopterin dinucleotide binding domain AL475_19735 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL475_19750 PF00672 HAMP domain AL475_19750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_19750 PF07730 Histidine kinase AL475_19750 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL475_19755 PF00072 Response regulator receiver domain AL475_19755 PF00196 Bacterial regulatory proteins, luxR family AL475_19760 PF03606 C4-dicarboxylate anaerobic carrier AL475_19775 PF07690 Major Facilitator Superfamily AL475_19780 PF00672 HAMP domain AL475_19780 PF17200 Single Cache domain 2 AL475_19780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_19785 PF13419 Haloacid dehalogenase-like hydrolase AL475_19790 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL475_19790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL475_19800 PF05736 OprF membrane domain AL475_19800 PF00691 OmpA family AL475_19805 PF08447 PAS fold AL475_19805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_19810 PF00456 Transketolase, thiamine diphosphate binding domain AL475_19810 PF02780 Transketolase, C-terminal domain AL475_19810 PF02779 Transketolase, pyrimidine binding domain AL475_19815 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL475_19825 PF00581 Rhodanese-like domain AL475_19830 PF00899 ThiF family AL475_19835 PF00994 Probable molybdopterin binding domain AL475_19835 PF03453 MoeA N-terminal region (domain I and II) AL475_19835 PF03454 MoeA C-terminal region (domain IV) AL475_19840 PF01227 GTP cyclohydrolase I AL475_19845 PF13520 Amino acid permease AL475_19850 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AL475_19855 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AL475_19860 PF12833 Helix-turn-helix domain AL475_19865 PF01625 Peptide methionine sulfoxide reductase AL475_19865 PF01641 SelR domain AL475_19870 PF01268 Formate--tetrahydrofolate ligase AL475_19880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_19880 PF03466 LysR substrate binding domain AL475_19885 PF13419 Haloacid dehalogenase-like hydrolase AL475_19890 PF14760 Rnk N-terminus AL475_19890 PF01272 Transcription elongation factor, GreA/GreB, C-term AL475_19900 PF13419 Haloacid dehalogenase-like hydrolase AL475_19910 PF00266 Aminotransferase class-V AL475_19920 PF00005 ABC transporter AL475_19925 PF00528 Binding-protein-dependent transport system inner membrane component AL475_19930 PF00392 Bacterial regulatory proteins, gntR family AL475_19930 PF07702 UTRA domain AL475_19940 PF18027 Cytosolic carboxypeptidase N-terminal domain AL475_19940 PF00246 Zinc carboxypeptidase AL475_19965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL475_19970 PF00528 Binding-protein-dependent transport system inner membrane component AL475_19975 PF00528 Binding-protein-dependent transport system inner membrane component AL475_19975 PF12911 N-terminal TM domain of oligopeptide transport permease C AL475_19980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL475_19980 PF00005 ABC transporter AL475_19985 PF00132 Bacterial transferase hexapeptide (six repeats) AL475_19985 PF03479 Plants and Prokaryotes Conserved (PCC) domain AL475_19985 PF12804 MobA-like NTP transferase domain AL475_20000 PF09456 RcsC Alpha-Beta-Loop (ABL) AL475_20000 PF00512 His Kinase A (phospho-acceptor) domain AL475_20000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_20000 PF00072 Response regulator receiver domain AL475_20005 PF01590 GAF domain AL475_20005 PF00360 Phytochrome region AL475_20005 PF00563 EAL domain AL475_20005 PF00990 Diguanylate cyclase, GGDEF domain AL475_20010 PF00072 Response regulator receiver domain AL475_20010 PF00196 Bacterial regulatory proteins, luxR family AL475_20015 PF00990 Diguanylate cyclase, GGDEF domain AL475_20015 PF07694 5TMR of 5TMR-LYT AL475_20030 PF05525 Branched-chain amino acid transport protein AL475_20045 PF18081 Fanconi anemia-associated nuclease SAP domain AL475_20045 PF08774 VRR-NUC domain AL475_20065 PF13302 Acetyltransferase (GNAT) domain AL475_20070 PF00111 2Fe-2S iron-sulfur cluster binding domain AL475_20070 PF01799 [2Fe-2S] binding domain AL475_20075 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AL475_20090 PF12833 Helix-turn-helix domain AL475_20090 PF06719 AraC-type transcriptional regulator N-terminus AL475_20110 PF00155 Aminotransferase class I and II AL475_20120 PF00005 ABC transporter AL475_20120 PF16326 ABC transporter C-terminal domain AL475_20120 PF12848 ABC transporter AL475_20125 PF01380 SIS domain AL475_20125 PF01418 Helix-turn-helix domain, rpiR family AL475_20130 PF13580 SIS domain AL475_20135 PF02378 Phosphotransferase system, EIIC AL475_20135 PF00367 phosphotransferase system, EIIB AL475_20140 PF07690 Major Facilitator Superfamily AL475_20155 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AL475_20160 PF00486 Transcriptional regulatory protein, C terminal AL475_20175 PF02567 Phenazine biosynthesis-like protein AL475_20200 PF00155 Aminotransferase class I and II AL475_20205 PF12833 Helix-turn-helix domain AL475_20205 PF02311 AraC-like ligand binding domain AL475_20210 PF01641 SelR domain AL475_20210 PF01625 Peptide methionine sulfoxide reductase AL475_20215 PF00860 Permease family AL475_20225 PF01177 Asp/Glu/Hydantoin racemase AL475_20235 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AL475_20245 PF00528 Binding-protein-dependent transport system inner membrane component AL475_20250 PF00528 Binding-protein-dependent transport system inner membrane component AL475_20255 PF00005 ABC transporter AL475_20265 PF13593 SBF-like CPA transporter family (DUF4137) AL475_20270 PF01425 Amidase AL475_20280 PF00266 Aminotransferase class-V AL475_20285 PF07687 Peptidase dimerisation domain AL475_20285 PF01546 Peptidase family M20/M25/M40 AL475_20300 PF01979 Amidohydrolase family AL475_20305 PF00576 HIUase/Transthyretin family AL475_20310 PF09349 OHCU decarboxylase AL475_20310 PF01014 Uricase AL475_20325 PF01799 [2Fe-2S] binding domain AL475_20325 PF00111 2Fe-2S iron-sulfur cluster binding domain AL475_20330 PF02608 ABC transporter substrate-binding protein PnrA-like AL475_20345 PF00005 ABC transporter AL475_20350 PF08362 YcdC-like protein, C-terminal region AL475_20350 PF00440 Bacterial regulatory proteins, tetR family AL475_20360 PF00990 Diguanylate cyclase, GGDEF domain AL475_20360 PF08448 PAS fold AL475_20370 PF00990 Diguanylate cyclase, GGDEF domain AL475_20370 PF00072 Response regulator receiver domain AL475_20385 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL475_20385 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL475_20385 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL475_20390 PF02233 NAD(P) transhydrogenase beta subunit AL475_20400 PF00072 Response regulator receiver domain AL475_20400 PF00486 Transcriptional regulatory protein, C terminal AL475_20415 PF03701 Uncharacterised protein family (UPF0181) AL475_20420 PF01253 Translation initiation factor SUI1 AL475_20435 PF07478 D-ala D-ala ligase C-terminus AL475_20435 PF01820 D-ala D-ala ligase N-terminus AL475_20445 PF13607 Succinyl-CoA ligase like flavodoxin domain AL475_20445 PF13380 CoA binding domain AL475_20445 PF00583 Acetyltransferase (GNAT) family AL475_20450 PF03466 LysR substrate binding domain AL475_20450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_20455 PF00593 TonB dependent receptor AL475_20455 PF07715 TonB-dependent Receptor Plug Domain AL475_20465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL475_20465 PF12793 Sugar transport-related sRNA regulator N-term AL475_20475 PF03061 Thioesterase superfamily AL475_20480 PF01435 Peptidase family M48 AL475_20485 PF08274 PhnA Zinc-Ribbon AL475_20485 PF03831 PhnA domain AL475_20495 PF03741 Integral membrane protein TerC family AL475_20500 PF02872 5'-nucleotidase, C-terminal domain AL475_20500 PF00149 Calcineurin-like phosphoesterase AL475_20505 PF11398 Protein of unknown function (DUF2813) AL475_20510 PF06496 Protein of unknown function (DUF1097) AL475_20515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_20515 PF03466 LysR substrate binding domain AL475_20520 PF01226 Formate/nitrite transporter AL475_20525 PF04264 YceI-like domain AL475_20530 PF01292 Prokaryotic cytochrome b561 AL475_20555 PF00990 Diguanylate cyclase, GGDEF domain AL475_20555 PF00563 EAL domain AL475_20555 PF13426 PAS domain AL475_20565 PF00384 Molybdopterin oxidoreductase AL475_20570 PF02634 FdhD/NarQ family AL475_20575 PF00970 Oxidoreductase FAD-binding domain AL475_20575 PF00042 Globin AL475_20575 PF00175 Oxidoreductase NAD-binding domain AL475_20580 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AL475_20580 PF00355 Rieske [2Fe-2S] domain AL475_20590 PF02028 BCCT, betaine/carnitine/choline family transporter AL475_20600 PF00766 Electron transfer flavoprotein FAD-binding domain AL475_20600 PF01012 Electron transfer flavoprotein domain AL475_20605 PF13183 4Fe-4S dicluster domain AL475_20605 PF02754 Cysteine-rich domain AL475_20610 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL475_20625 PF12833 Helix-turn-helix domain AL475_20625 PF01965 DJ-1/PfpI family AL475_20630 PF03315 Serine dehydratase beta chain AL475_20630 PF03313 Serine dehydratase alpha chain AL475_20635 PF00551 Formyl transferase AL475_20640 PF04268 Sarcosine oxidase, gamma subunit family AL475_20645 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL475_20645 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_20645 PF01571 Aminomethyltransferase folate-binding domain AL475_20645 PF17806 Sarcosine oxidase A3 domain AL475_20650 PF04267 Sarcosine oxidase, delta subunit family AL475_20655 PF01266 FAD dependent oxidoreductase AL475_20660 PF00464 Serine hydroxymethyltransferase AL475_20665 PF12833 Helix-turn-helix domain AL475_20670 PF01627 Hpt domain AL475_20670 PF00672 HAMP domain AL475_20670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_20670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL475_20670 PF00512 His Kinase A (phospho-acceptor) domain AL475_20670 PF00072 Response regulator receiver domain AL475_20675 PF00072 Response regulator receiver domain AL475_20685 PF12833 Helix-turn-helix domain AL475_20685 PF02311 AraC-like ligand binding domain AL475_20690 PF13356 Arm DNA-binding domain AL475_20690 PF00589 Phage integrase family AL475_20700 PF00816 H-NS histone family AL475_20705 PF00990 Diguanylate cyclase, GGDEF domain AL475_20705 PF00563 EAL domain AL475_20705 PF13426 PAS domain AL475_20710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_20710 PF17200 Single Cache domain 2 AL475_20710 PF00672 HAMP domain AL475_20725 PF00563 EAL domain AL475_20725 PF01590 GAF domain AL475_20725 PF00990 Diguanylate cyclase, GGDEF domain AL475_20725 PF00360 Phytochrome region AL475_20755 PF00196 Bacterial regulatory proteins, luxR family AL475_20755 PF17874 MalT-like TPR region AL475_20775 PF02665 Nitrate reductase gamma subunit AL475_20780 PF02613 Nitrate reductase delta subunit AL475_20785 PF13247 4Fe-4S dicluster domain AL475_20785 PF14711 Respiratory nitrate reductase beta C-terminal AL475_20790 PF14710 Respiratory nitrate reductase alpha N-terminal AL475_20790 PF01568 Molydopterin dinucleotide binding domain AL475_20790 PF00384 Molybdopterin oxidoreductase AL475_20795 PF07690 Major Facilitator Superfamily AL475_20800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_20800 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL475_20800 PF07730 Histidine kinase AL475_20800 PF00672 HAMP domain AL475_20805 PF00196 Bacterial regulatory proteins, luxR family AL475_20805 PF00072 Response regulator receiver domain AL475_20810 PF01814 Hemerythrin HHE cation binding domain AL475_20810 PF04405 Domain of Unknown function (DUF542) AL475_20815 PF00571 CBS domain AL475_20815 PF01769 Divalent cation transporter AL475_20815 PF03448 MgtE intracellular N domain AL475_20820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_20820 PF00672 HAMP domain AL475_20820 PF17202 Single cache domain 3 AL475_20830 PF18113 Rubredoxin binding C-terminal domain AL475_20830 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_20835 PF00258 Flavodoxin AL475_20835 PF00753 Metallo-beta-lactamase superfamily AL475_20835 PF00301 Rubredoxin AL475_20840 PF00158 Sigma-54 interaction domain AL475_20840 PF01590 GAF domain AL475_20850 PF09615 CRISPR-associated protein (Cas_Csy3) AL475_20855 PF09614 CRISPR-associated protein (Cas_Csy2) AL475_20860 PF09611 CRISPR-associated protein (Cas_Csy1) AL475_20865 PF18019 HD domain AL475_20870 PF01867 CRISPR associated protein Cas1 AL475_20885 PF04002 RadC-like JAB domain AL475_20920 PF00075 RNase H AL475_20960 PF04717 Type VI secretion system, phage-baseplate injector AL475_20960 PF16671 Actin cross-linking domain AL475_20965 PF05638 Type VI secretion system effector, Hcp AL475_20975 PF01926 50S ribosome-binding GTPase AL475_20980 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL475_20980 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL475_20985 PF00654 Voltage gated chloride channel AL475_20995 PF00155 Aminotransferase class I and II AL475_21000 PF00072 Response regulator receiver domain AL475_21000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_21005 PF13476 AAA domain AL475_21010 PF00149 Calcineurin-like phosphoesterase AL475_21010 PF12320 Type 5 capsule protein repressor C-terminal domain AL475_21015 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL475_21015 PF00356 Bacterial regulatory proteins, lacI family AL475_21020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL475_21020 PF00381 PTS HPr component phosphorylation site AL475_21025 PF00294 pfkB family carbohydrate kinase AL475_21030 PF02378 Phosphotransferase system, EIIC AL475_21030 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL475_21035 PF18030 RimK PreATP-grasp domain AL475_21035 PF08443 RimK-like ATP-grasp domain AL475_21040 PF00155 Aminotransferase class I and II AL475_21050 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL475_21050 PF03477 ATP cone domain AL475_21060 PF00873 AcrB/AcrD/AcrF family AL475_21065 PF00529 HlyD membrane-fusion protein of T1SS AL475_21065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_21075 PF04143 Sulphur transport AL475_21090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL475_21090 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_21105 PF06719 AraC-type transcriptional regulator N-terminus AL475_21105 PF12833 Helix-turn-helix domain AL475_21115 PF12146 Serine aminopeptidase, S33 AL475_21120 PF12146 Serine aminopeptidase, S33 AL475_21125 PF06772 Bacterial low temperature requirement A protein (LtrA) AL475_21130 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL475_21135 PF00106 short chain dehydrogenase AL475_21150 PF12146 Serine aminopeptidase, S33 AL475_21155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_21155 PF03466 LysR substrate binding domain AL475_21175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_21175 PF00529 HlyD membrane-fusion protein of T1SS AL475_21180 PF00440 Bacterial regulatory proteins, tetR family AL475_21195 PF03466 LysR substrate binding domain AL475_21195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_21200 PF01810 LysE type translocator AL475_21205 PF00072 Response regulator receiver domain AL475_21205 PF00486 Transcriptional regulatory protein, C terminal AL475_21215 PF01266 FAD dependent oxidoreductase AL475_21215 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL475_21225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_21225 PF03466 LysR substrate binding domain AL475_21240 PF00440 Bacterial regulatory proteins, tetR family AL475_21245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL475_21245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL475_21250 PF01596 O-methyltransferase AL475_21260 PF01810 LysE type translocator AL475_21275 PF00857 Isochorismatase family AL475_21280 PF12833 Helix-turn-helix domain AL475_21280 PF01965 DJ-1/PfpI family AL475_21285 PF00583 Acetyltransferase (GNAT) family AL475_21295 PF01810 LysE type translocator AL475_21300 PF00293 NUDIX domain AL475_21305 PF06942 GlpM protein AL475_21310 PF02272 DHHA1 domain AL475_21310 PF01411 tRNA synthetases class II (A) AL475_21310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL475_21325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL475_21340 PF13419 Haloacid dehalogenase-like hydrolase AL475_21345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL475_21365 PF01928 CYTH domain AL475_21370 PF00583 Acetyltransferase (GNAT) family AL475_21405 PF13649 Methyltransferase domain AL475_21415 PF08534 Redoxin AL475_21415 PF00462 Glutaredoxin AL475_21420 PF00892 EamA-like transporter family AL475_21430 PF02627 Carboxymuconolactone decarboxylase family AL475_21435 PF13411 MerR HTH family regulatory protein AL475_21500 PF09905 DNA-binding protein VF530 AL475_21515 PF03239 Iron permease FTR1 family AL475_21520 PF00453 Ribosomal protein L20 AL475_21525 PF01632 Ribosomal protein L35 AL475_21530 PF00707 Translation initiation factor IF-3, C-terminal domain AL475_21530 PF05198 Translation initiation factor IF-3, N-terminal domain AL475_21535 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL475_21535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL475_21535 PF02824 TGS domain AL475_21535 PF03129 Anticodon binding domain AL475_21540 PF00270 DEAD/DEAH box helicase AL475_21540 PF00271 Helicase conserved C-terminal domain AL475_21540 PF03880 DbpA RNA binding domain AL475_21545 PF00575 S1 RNA binding domain AL475_21545 PF00773 RNB domain AL475_21545 PF08206 Ribonuclease B OB domain AL475_21555 PF12849 PBP superfamily domain AL475_21560 PF01575 MaoC like domain AL475_21565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_21565 PF03466 LysR substrate binding domain AL475_21580 PF00486 Transcriptional regulatory protein, C terminal AL475_21585 PF11412 Disulphide bond corrector protein DsbC AL475_21585 PF02683 Cytochrome C biogenesis protein transmembrane region AL475_21590 PF00578 AhpC/TSA family AL475_21595 PF02525 Flavodoxin-like fold AL475_21600 PF00392 Bacterial regulatory proteins, gntR family AL475_21600 PF00155 Aminotransferase class I and II AL475_21605 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_21620 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL475_21630 PF12833 Helix-turn-helix domain AL475_21635 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL475_21635 PF02378 Phosphotransferase system, EIIC AL475_21635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL475_21640 PF01238 Phosphomannose isomerase type I AL475_21655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL475_21655 PF00529 HlyD membrane-fusion protein of T1SS AL475_21665 PF03466 LysR substrate binding domain AL475_21665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_21680 PF02321 Outer membrane efflux protein AL475_21690 PF00664 ABC transporter transmembrane region AL475_21690 PF00005 ABC transporter AL475_21705 PF14863 Alkyl sulfatase dimerisation AL475_21705 PF00753 Metallo-beta-lactamase superfamily AL475_21705 PF14864 Alkyl sulfatase C-terminal AL475_21715 PF08220 DeoR-like helix-turn-helix domain AL475_21715 PF00455 DeoR C terminal sensor domain AL475_21720 PF14602 Hexapeptide repeat of succinyl-transferase AL475_21720 PF12464 Maltose acetyltransferase AL475_21725 PF17158 Membrane-associated sensor, integral membrane domain AL475_21725 PF00990 Diguanylate cyclase, GGDEF domain AL475_21730 PF12729 Four helix bundle sensory module for signal transduction AL475_21730 PF00672 HAMP domain AL475_21730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_21735 PF00797 N-acetyltransferase AL475_21755 PF00528 Binding-protein-dependent transport system inner membrane component AL475_21760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL475_21765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL475_21765 PF00005 ABC transporter AL475_21770 PF03466 LysR substrate binding domain AL475_21770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_21775 PF00072 Response regulator receiver domain AL475_21780 PF00512 His Kinase A (phospho-acceptor) domain AL475_21780 PF00072 Response regulator receiver domain AL475_21780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL475_21780 PF01627 Hpt domain AL475_21790 PF01975 Survival protein SurE AL475_21805 PF12833 Helix-turn-helix domain AL475_21810 PF03807 NADP oxidoreductase coenzyme F420-dependent AL475_21810 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL475_21815 PF03480 Bacterial extracellular solute-binding protein, family 7 AL475_21825 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL475_21830 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL475_21840 PF00474 Sodium:solute symporter family AL475_21845 PF03466 LysR substrate binding domain AL475_21845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_21850 PF13409 Glutathione S-transferase, N-terminal domain AL475_21855 PF02230 Phospholipase/Carboxylesterase AL475_21860 PF01810 LysE type translocator AL475_21875 PF01546 Peptidase family M20/M25/M40 AL475_21875 PF07687 Peptidase dimerisation domain AL475_21880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_21880 PF03466 LysR substrate binding domain AL475_21885 PF07690 Major Facilitator Superfamily AL475_21890 PF00005 ABC transporter AL475_21895 PF01032 FecCD transport family AL475_21900 PF01497 Periplasmic binding protein AL475_21905 PF03480 Bacterial extracellular solute-binding protein, family 7 AL475_21910 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL475_21915 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL475_21920 PF02614 Glucuronate isomerase AL475_21925 PF08125 Mannitol dehydrogenase C-terminal domain AL475_21925 PF01232 Mannitol dehydrogenase Rossmann domain AL475_21930 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AL475_21930 PF08666 SAF domain AL475_21935 PF07729 FCD domain AL475_21935 PF00392 Bacterial regulatory proteins, gntR family AL475_21955 PF00676 Dehydrogenase E1 component AL475_21960 PF02779 Transketolase, pyrimidine binding domain AL475_21960 PF02780 Transketolase, C-terminal domain AL475_21965 PF00364 Biotin-requiring enzyme AL475_21965 PF02817 e3 binding domain AL475_21965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL475_21970 PF00766 Electron transfer flavoprotein FAD-binding domain AL475_21970 PF01012 Electron transfer flavoprotein domain AL475_21975 PF01012 Electron transfer flavoprotein domain AL475_21985 PF02798 Glutathione S-transferase, N-terminal domain AL475_22005 PF00005 ABC transporter AL475_22010 PF00528 Binding-protein-dependent transport system inner membrane component AL475_22015 PF00528 Binding-protein-dependent transport system inner membrane component AL475_22020 PF12849 PBP superfamily domain AL475_22030 PF12833 Helix-turn-helix domain AL475_22040 PF03180 NLPA lipoprotein AL475_22045 PF00425 chorismate binding enzyme AL475_22045 PF04715 Anthranilate synthase component I, N terminal region AL475_22045 PF00117 Glutamine amidotransferase class-I AL475_22050 PF03466 LysR substrate binding domain AL475_22050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_22055 PF00196 Bacterial regulatory proteins, luxR family AL475_22055 PF00072 Response regulator receiver domain AL475_22060 PF07730 Histidine kinase AL475_22060 PF17200 Single Cache domain 2 AL475_22065 PF03480 Bacterial extracellular solute-binding protein, family 7 AL475_22075 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL475_22080 PF02810 SEC-C motif AL475_22080 PF07516 SecA Wing and Scaffold domain AL475_22080 PF01043 SecA preprotein cross-linking domain AL475_22080 PF07517 SecA DEAD-like domain AL475_22085 PF07690 Major Facilitator Superfamily AL475_22100 PF01144 Coenzyme A transferase AL475_22110 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL475_22110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL475_22115 PF00378 Enoyl-CoA hydratase/isomerase AL475_22120 PF00378 Enoyl-CoA hydratase/isomerase AL475_22125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL475_22125 PF02770 Acyl-CoA dehydrogenase, middle domain AL475_22125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL475_22130 PF00171 Aldehyde dehydrogenase family AL475_22135 PF02803 Thiolase, C-terminal domain AL475_22135 PF00108 Thiolase, N-terminal domain AL475_22140 PF00376 MerR family regulatory protein AL475_22140 PF09278 MerR, DNA binding AL475_22145 PF02770 Acyl-CoA dehydrogenase, middle domain AL475_22145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL475_22145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL475_22150 PF01039 Carboxyl transferase domain AL475_22155 PF00378 Enoyl-CoA hydratase/isomerase AL475_22160 PF00682 HMGL-like AL475_22170 PF00578 AhpC/TSA family AL475_22170 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL475_22175 PF13192 Thioredoxin domain AL475_22175 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL475_22180 PF01979 Amidohydrolase family AL475_22195 PF00561 alpha/beta hydrolase fold AL475_22205 PF12833 Helix-turn-helix domain AL475_22210 PF00465 Iron-containing alcohol dehydrogenase AL475_22215 PF01966 HD domain AL475_22230 PF00300 Histidine phosphatase superfamily (branch 1) AL475_22285 PF00871 Acetokinase family AL475_22295 PF07715 TonB-dependent Receptor Plug Domain AL475_22295 PF00593 TonB dependent receptor AL475_22300 PF12833 Helix-turn-helix domain AL475_22305 PF00005 ABC transporter AL475_22310 PF01032 FecCD transport family AL475_22315 PF01032 FecCD transport family AL475_22335 PF05547 Immune inhibitor A peptidase M6 AL475_22335 PF00801 PKD domain AL475_22340 PF03280 Proteobacterial lipase chaperone protein AL475_22345 PF00561 alpha/beta hydrolase fold AL475_22350 PF00672 HAMP domain AL475_22350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_22355 PF01037 Lrp/AsnC ligand binding domain AL475_22355 PF13404 AsnC-type helix-turn-helix domain AL475_22375 PF07690 Major Facilitator Superfamily AL475_22385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_22385 PF00672 HAMP domain AL475_22385 PF12729 Four helix bundle sensory module for signal transduction AL475_22400 PF02540 NAD synthase AL475_22405 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL475_22410 PF04397 LytTr DNA-binding domain AL475_22410 PF00072 Response regulator receiver domain AL475_22415 PF06580 Histidine kinase AL475_22415 PF07694 5TMR of 5TMR-LYT AL475_22420 PF00248 Aldo/keto reductase family AL475_22435 PF00128 Alpha amylase, catalytic domain AL475_22440 PF01447 Thermolysin metallopeptidase, catalytic domain AL475_22440 PF03413 Peptidase propeptide and YPEB domain AL475_22440 PF07504 Fungalysin/Thermolysin Propeptide Motif AL475_22440 PF04151 Bacterial pre-peptidase C-terminal domain AL475_22440 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL475_22445 PF03922 OmpW family AL475_22450 PF00011 Hsp20/alpha crystallin family AL475_22460 PF01042 Endoribonuclease L-PSP AL475_22470 PF01844 HNH endonuclease AL475_22480 PF00664 ABC transporter transmembrane region AL475_22480 PF00005 ABC transporter AL475_22485 PF00664 ABC transporter transmembrane region AL475_22485 PF00005 ABC transporter AL475_22495 PF00563 EAL domain AL475_22495 PF12792 CSS motif domain associated with EAL AL475_22500 PF04138 GtrA-like protein AL475_22510 PF00912 Transglycosylase AL475_22520 PF01327 Polypeptide deformylase AL475_22530 PF00155 Aminotransferase class I and II AL475_22530 PF00392 Bacterial regulatory proteins, gntR family AL475_22535 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL475_22535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL475_22540 PF01925 Sulfite exporter TauE/SafE AL475_22545 PF01039 Carboxyl transferase domain AL475_22545 PF17848 Acetyl-coA carboxylase zinc finger domain AL475_22550 PF03466 LysR substrate binding domain AL475_22550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_22575 PF00483 Nucleotidyl transferase AL475_22595 PF08240 Alcohol dehydrogenase GroES-like domain AL475_22595 PF00107 Zinc-binding dehydrogenase AL475_22600 PF00155 Aminotransferase class I and II AL475_22605 PF00171 Aldehyde dehydrogenase family AL475_22610 PF02954 Bacterial regulatory protein, Fis family AL475_22610 PF01590 GAF domain AL475_22610 PF00158 Sigma-54 interaction domain AL475_22615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_22615 PF03466 LysR substrate binding domain AL475_22620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL475_22650 PF01966 HD domain AL475_22655 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AL475_22655 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AL475_22660 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL475_22665 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL475_22665 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL475_22675 PF02743 Cache domain AL475_22675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_22675 PF00672 HAMP domain AL475_22680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_22680 PF03466 LysR substrate binding domain AL475_22695 PF02574 Homocysteine S-methyltransferase AL475_22695 PF00809 Pterin binding enzyme AL475_22695 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL475_22695 PF02607 B12 binding domain AL475_22695 PF02310 B12 binding domain AL475_22700 PF13520 Amino acid permease AL475_22710 PF03466 LysR substrate binding domain AL475_22710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL475_22715 PF01546 Peptidase family M20/M25/M40 AL475_22715 PF07687 Peptidase dimerisation domain AL475_22720 PF03806 AbgT putative transporter family AL475_22725 PF02595 Glycerate kinase family AL475_22730 PF02447 GntP family permease AL475_22735 PF17853 GGDEF-like domain AL475_22735 PF13556 PucR C-terminal helix-turn-helix domain AL475_22735 PF05651 Putative sugar diacid recognition AL475_22740 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL475_22740 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL475_22745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL475_22745 PF12793 Sugar transport-related sRNA regulator N-term AL475_22760 PF02743 Cache domain AL475_22760 PF00672 HAMP domain AL475_22760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_22775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL475_22775 PF00672 HAMP domain AL475_22775 PF02743 Cache domain AL475_22780 PF00375 Sodium:dicarboxylate symporter family AL475_22785 PF01042 Endoribonuclease L-PSP AL475_22820 PF00263 Bacterial type II and III secretion system protein AL475_22820 PF13629 Pilus formation protein N terminal region AL475_22820 PF04972 BON domain AL475_22825 PF00437 Type II/IV secretion system protein AL475_22855 PF03960 ArsC family AL475_22860 PF01758 Sodium Bile acid symporter family AL475_22875 PF00478 IMP dehydrogenase / GMP reductase domain AL475_22885 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL475_22885 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL475_22890 PF01256 Carbohydrate kinase AL475_22890 PF03853 YjeF-related protein N-terminus AL475_22900 PF00486 Transcriptional regulatory protein, C terminal AL475_22900 PF00072 Response regulator receiver domain AL475_22920 PF03889 Alternative ribosome-rescue factor A AL475_22925 PF00313 'Cold-shock' DNA-binding domain AL475_22930 PF07152 YaeQ protein AL475_22935 PF00990 Diguanylate cyclase, GGDEF domain AL475_22940 PF00175 Oxidoreductase NAD-binding domain AL475_22940 PF00042 Globin AL475_22940 PF00970 Oxidoreductase FAD-binding domain