locus-tag class description vfu_A00001 PF03144 Elongation factor Tu domain 2 vfu_A00001 PF00009 Elongation factor Tu GTP binding domain vfu_A00001 PF03764 Elongation factor G, domain IV vfu_A00001 PF14492 Elongation Factor G, domain II vfu_A00001 PF00679 Elongation factor G C-terminus vfu_A00002 PF00177 Ribosomal protein S7p/S5e vfu_A00003 PF00164 Ribosomal protein S12/S23 vfu_A00004 PF04077 DsrH like protein vfu_A00005 PF02635 DsrE/DsrF-like family vfu_A00006 PF02635 DsrE/DsrF-like family vfu_A00007 PF08348 YheO-like PAS domain vfu_A00007 PF13309 HTH domain vfu_A00008 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase vfu_A00008 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase vfu_A00010 PF04102 SlyX vfu_A00011 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) vfu_A00012 PF01145 SPFH domain / Band 7 family vfu_A00013 PF12221 Bacterial membrane protein N terminal vfu_A00013 PF01145 SPFH domain / Band 7 family vfu_A00014 PF16360 GTP-binding GTPase Middle Region vfu_A00014 PF01926 50S ribosome-binding GTPase vfu_A00014 PF13167 GTP-binding GTPase N-terminal vfu_A00015 PF17209 Hfq protein vfu_A00017 PF08676 MutL C terminal dimerisation domain vfu_A00017 PF01119 DNA mismatch repair protein, C-terminal domain vfu_A00018 PF01520 N-acetylmuramoyl-L-alanine amidase vfu_A00019 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE vfu_A00020 PF08331 Domain of unknown function (DUF1730) vfu_A00022 PF00929 Exonuclease vfu_A00023 PF03193 RsgA GTPase vfu_A00024 PF02666 Phosphatidylserine decarboxylase vfu_A00027 PF02080 TrkA-C domain vfu_A00027 PF03600 Citrate transporter vfu_A00028 PF02743 Cache domain vfu_A00028 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A00028 PF00672 HAMP domain vfu_A00030 PF06415 BPG-independent PGAM N-terminus (iPGM_N) vfu_A00030 PF01676 Metalloenzyme superfamily vfu_A00031 PF01551 Peptidase family M23 vfu_A00033 PF08360 QacR-like protein, C-terminal region vfu_A00033 PF00440 Bacterial regulatory proteins, tetR family vfu_A00034 PF01208 Uroporphyrinogen decarboxylase (URO-D) vfu_A00035 PF09297 NADH pyrophosphatase zinc ribbon domain vfu_A00035 PF00293 NUDIX domain vfu_A00036 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ vfu_A00037 PF00623 RNA polymerase Rpb1, domain 2 vfu_A00037 PF05000 RNA polymerase Rpb1, domain 4 vfu_A00037 PF04983 RNA polymerase Rpb1, domain 3 vfu_A00037 PF04998 RNA polymerase Rpb1, domain 5 vfu_A00037 PF04997 RNA polymerase Rpb1, domain 1 vfu_A00038 PF04560 RNA polymerase Rpb2, domain 7 vfu_A00038 PF04563 RNA polymerase beta subunit vfu_A00038 PF04561 RNA polymerase Rpb2, domain 2 vfu_A00038 PF00562 RNA polymerase Rpb2, domain 6 vfu_A00038 PF04565 RNA polymerase Rpb2, domain 3 vfu_A00038 PF10385 RNA polymerase beta subunit external 1 domain vfu_A00039 PF16320 Ribosomal protein L7/L12 dimerisation domain vfu_A00039 PF00542 Ribosomal protein L7/L12 C-terminal domain vfu_A00040 PF00466 Ribosomal protein L10 vfu_A00041 PF00687 Ribosomal protein L1p/L10e family vfu_A00042 PF03946 Ribosomal protein L11, N-terminal domain vfu_A00042 PF00298 Ribosomal protein L11, RNA binding domain vfu_A00043 PF00467 KOW motif vfu_A00043 PF02357 Transcription termination factor nusG vfu_A00044 PF00584 SecE/Sec61-gamma subunits of protein translocation complex vfu_A00045 PF03144 Elongation factor Tu domain 2 vfu_A00045 PF03143 Elongation factor Tu C-terminal domain vfu_A00045 PF00009 Elongation factor Tu GTP binding domain vfu_A00046 PF00485 Phosphoribulokinase / Uridine kinase family vfu_A00047 PF08279 HTH domain vfu_A00047 PF03099 Biotin/lipoate A/B protein ligase family vfu_A00047 PF02237 Biotin protein ligase C terminal domain vfu_A00048 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain vfu_A00048 PF01565 FAD binding domain vfu_A00050 PF13091 PLD-like domain vfu_A00054 PF00175 Oxidoreductase NAD-binding domain vfu_A00055 PF00175 Oxidoreductase NAD-binding domain vfu_A00055 PF00111 2Fe-2S iron-sulfur cluster binding domain vfu_A00055 PF00970 Oxidoreductase FAD-binding domain vfu_A00056 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase vfu_A00058 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain vfu_A00058 PF07498 Rho termination factor, N-terminal domain vfu_A00058 PF07497 Rho termination factor, RNA-binding domain vfu_A00059 PF00085 Thioredoxin vfu_A00060 PF00270 DEAD/DEAH box helicase vfu_A00060 PF00271 Helicase conserved C-terminal domain vfu_A00061 PF02541 Ppx/GppA phosphatase family vfu_A00062 PF00072 Response regulator receiver domain vfu_A00062 PF01627 Hpt domain vfu_A00062 PF00512 His Kinase A (phospho-acceptor) domain vfu_A00062 PF00497 Bacterial extracellular solute-binding proteins, family 3 vfu_A00062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A00063 PF12832 MFS_1 like family vfu_A00066 PF13193 AMP-binding enzyme C-terminal domain vfu_A00066 PF16177 Acetyl-coenzyme A synthetase N-terminus vfu_A00066 PF00501 AMP-binding enzyme vfu_A00067 PF01220 Dehydroquinase class II vfu_A00068 PF00364 Biotin-requiring enzyme vfu_A00069 PF02785 Biotin carboxylase C-terminal domain vfu_A00069 PF00289 Biotin carboxylase, N-terminal domain vfu_A00069 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain vfu_A00071 PF01207 Dihydrouridine synthase (Dus) vfu_A00072 PF02954 Bacterial regulatory protein, Fis family vfu_A00073 PF00672 HAMP domain vfu_A00073 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A00073 PF17200 Single Cache domain 2 vfu_A00074 PF02378 Phosphotransferase system, EIIC vfu_A00074 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit vfu_A00076 PF12833 Helix-turn-helix domain vfu_A00077 PF02378 Phosphotransferase system, EIIC vfu_A00077 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 vfu_A00077 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit vfu_A00078 PF01238 Phosphomannose isomerase type I vfu_A00079 PF00480 ROK family vfu_A00080 PF13411 MerR HTH family regulatory protein vfu_A00082 PF02142 MGS-like domain vfu_A00082 PF01808 AICARFT/IMPCHase bienzyme vfu_A00083 PF02844 Phosphoribosylglycinamide synthetase, N domain vfu_A00083 PF02843 Phosphoribosylglycinamide synthetase, C domain vfu_A00083 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain vfu_A00085 PF00216 Bacterial DNA-binding protein vfu_A00086 PF00571 CBS domain vfu_A00086 PF01595 Cyclin M transmembrane N-terminal domain vfu_A00087 PF00924 Mechanosensitive ion channel vfu_A00088 PF04222 Protein of unknown function (DUF416) vfu_A00089 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain vfu_A00090 PF03167 Uracil DNA glycosylase superfamily vfu_A00094 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain vfu_A00094 PF01464 Transglycosylase SLT domain vfu_A00097 PF00753 Metallo-beta-lactamase superfamily vfu_A00097 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain vfu_A00097 PF10996 Beta-Casp domain vfu_A00098 PF02397 Bacterial sugar transferase vfu_A00099 PF05159 Capsule polysaccharide biosynthesis protein vfu_A00100 PF00534 Glycosyl transferases group 1 vfu_A00101 PF00534 Glycosyl transferases group 1 vfu_A00101 PF13439 Glycosyltransferase Family 4 vfu_A00103 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family vfu_A00104 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase vfu_A00105 PF13193 AMP-binding enzyme C-terminal domain vfu_A00105 PF00501 AMP-binding enzyme vfu_A00110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal vfu_A00110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III vfu_A00111 PF00483 Nucleotidyl transferase vfu_A00112 PF16363 GDP-mannose 4,6 dehydratase vfu_A00114 PF00953 Glycosyl transferase family 4 vfu_A00115 PF00483 Nucleotidyl transferase vfu_A00116 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain vfu_A00116 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain vfu_A00116 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain vfu_A00117 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain vfu_A00117 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain vfu_A00117 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain vfu_A00118 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain vfu_A00118 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain vfu_A00118 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain vfu_A00124 PF01370 NAD dependent epimerase/dehydratase family vfu_A00126 PF13807 G-rich domain on putative tyrosine kinase vfu_A00126 PF02706 Chain length determinant protein vfu_A00126 PF13614 AAA domain vfu_A00127 PF01451 Low molecular weight phosphotyrosine protein phosphatase vfu_A00128 PF10531 SLBB domain vfu_A00128 PF18412 Outer-membrane lipoprotein Wza C-terminal domain vfu_A00128 PF02563 Polysaccharide biosynthesis/export protein vfu_A00130 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF vfu_A00132 PF06082 Exopolysaccharide biosynthesis protein YbjH vfu_A00133 PF01370 NAD dependent epimerase/dehydratase family vfu_A00134 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain vfu_A00134 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain vfu_A00134 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain vfu_A00135 PF03279 Bacterial lipid A biosynthesis acyltransferase vfu_A00138 PF00534 Glycosyl transferases group 1 vfu_A00138 PF13439 Glycosyltransferase Family 4 vfu_A00141 PF01075 Glycosyltransferase family 9 (heptosyltransferase) vfu_A00142 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) vfu_A00145 PF01075 Glycosyltransferase family 9 (heptosyltransferase) vfu_A00146 PF00535 Glycosyl transferase family 2 vfu_A00147 PF00534 Glycosyl transferases group 1 vfu_A00147 PF13439 Glycosyltransferase Family 4 vfu_A00148 PF13439 Glycosyltransferase Family 4 vfu_A00148 PF00534 Glycosyl transferases group 1 vfu_A00149 PF01467 Cytidylyltransferase-like vfu_A00151 PF01370 NAD dependent epimerase/dehydratase family vfu_A00152 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain vfu_A00152 PF06827 Zinc finger found in FPG and IleRS vfu_A00152 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain vfu_A00154 PF00471 Ribosomal protein L33 vfu_A00156 PF04002 RadC-like JAB domain vfu_A00157 PF17200 Single Cache domain 2 vfu_A00157 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A00157 PF00672 HAMP domain vfu_A00158 PF02441 Flavoprotein vfu_A00158 PF04127 DNA / pantothenate metabolism flavoprotein vfu_A00159 PF00440 Bacterial regulatory proteins, tetR family vfu_A00160 PF03279 Bacterial lipid A biosynthesis acyltransferase vfu_A00161 PF00156 Phosphoribosyl transferase domain vfu_A00162 PF00156 Phosphoribosyl transferase domain vfu_A00163 PF03725 3' exoribonuclease family, domain 2 vfu_A00163 PF01138 3' exoribonuclease family, domain 1 vfu_A00164 PF08340 Domain of unknown function (DUF1732) vfu_A00164 PF03755 YicC-like family, N-terminal region vfu_A00168 PF04002 RadC-like JAB domain vfu_A00178 PF00873 AcrB/AcrD/AcrF family vfu_A00181 PF13737 Transposase DDE domain vfu_A00182 PF13276 HTH-like domain vfu_A00182 PF00665 Integrase core domain vfu_A00182 PF13333 Integrase core domain vfu_A00184 PF01527 Transposase vfu_A00185 PF00672 HAMP domain vfu_A00185 PF00512 His Kinase A (phospho-acceptor) domain vfu_A00185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A00186 PF00072 Response regulator receiver domain vfu_A00186 PF00486 Transcriptional regulatory protein, C terminal vfu_A00188 PF13358 DDE superfamily endonuclease vfu_A00190 PF00672 HAMP domain vfu_A00190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A00193 PF00403 Heavy-metal-associated domain vfu_A00200 PF00403 Heavy-metal-associated domain vfu_A00205 PF00075 RNase H vfu_A00211 PF03350 Uncharacterized protein family, UPF0114 vfu_A00212 PF01032 FecCD transport family vfu_A00213 PF01497 Periplasmic binding protein vfu_A00214 PF00005 ABC transporter vfu_A00215 PF00593 TonB dependent receptor vfu_A00215 PF07715 TonB-dependent Receptor Plug Domain vfu_A00216 PF00664 ABC transporter transmembrane region vfu_A00216 PF00005 ABC transporter vfu_A00219 PF09382 RQC domain vfu_A00219 PF00270 DEAD/DEAH box helicase vfu_A00219 PF00271 Helicase conserved C-terminal domain vfu_A00219 PF00570 HRDC domain vfu_A00219 PF16124 RecQ zinc-binding vfu_A00220 PF00892 EamA-like transporter family vfu_A00222 PF01810 LysE type translocator vfu_A00224 PF00580 UvrD/REP helicase N-terminal domain vfu_A00224 PF13361 UvrD-like helicase C-terminal domain vfu_A00227 PF05114 Protein of unknown function (DUF692) vfu_A00231 PF01432 Peptidase family M3 vfu_A00232 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ vfu_A00233 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_A00233 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain vfu_A00234 PF12802 MarR family vfu_A00236 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_A00236 PF00529 HlyD membrane-fusion protein of T1SS vfu_A00237 PF00873 AcrB/AcrD/AcrF family vfu_A00244 PF12911 N-terminal TM domain of oligopeptide transport permease C vfu_A00244 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A00246 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vfu_A00247 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vfu_A00247 PF00005 ABC transporter vfu_A00249 PF13442 Cytochrome C oxidase, cbb3-type, subunit III vfu_A00250 PF00580 UvrD/REP helicase N-terminal domain vfu_A00250 PF13361 UvrD-like helicase C-terminal domain vfu_A00251 PF00440 Bacterial regulatory proteins, tetR family vfu_A00252 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_A00253 PF00873 AcrB/AcrD/AcrF family vfu_A00254 PF04380 Membrane fusogenic activity vfu_A00255 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain vfu_A00255 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain vfu_A00256 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain vfu_A00256 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain vfu_A00257 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain vfu_A00257 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain vfu_A00258 PF03466 LysR substrate binding domain vfu_A00258 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A00261 PF00132 Bacterial transferase hexapeptide (six repeats) vfu_A00262 PF07369 Protein of unknown function (DUF1488) vfu_A00263 PF08501 Shikimate dehydrogenase substrate binding domain vfu_A00263 PF01488 Shikimate / quinate 5-dehydrogenase vfu_A00263 PF18317 Shikimate 5'-dehydrogenase C-terminal domain vfu_A00264 PF01218 Coproporphyrinogen III oxidase vfu_A00265 PF01300 Telomere recombination vfu_A00266 PF00731 AIR carboxylase vfu_A00267 PF02222 ATP-grasp domain vfu_A00267 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain vfu_A00268 PF01396 Topoisomerase DNA binding C4 zinc finger vfu_A00269 PF04361 Protein of unknown function (DUF494) vfu_A00270 PF17782 DprA winged helix domain vfu_A00270 PF02481 DNA recombination-mediator protein A vfu_A00272 PF01327 Polypeptide deformylase vfu_A00273 PF02911 Formyl transferase, C-terminal domain vfu_A00273 PF00551 Formyl transferase vfu_A00274 PF01189 16S rRNA methyltransferase RsmB/F vfu_A00274 PF01029 NusB family vfu_A00275 PF02254 TrkA-N domain vfu_A00275 PF02080 TrkA-C domain vfu_A00276 PF02386 Cation transport protein vfu_A00278 PF03006 Haemolysin-III related vfu_A00279 PF07070 SpoOM protein vfu_A00281 PF06288 Protein of unknown function (DUF1040) vfu_A00282 PF13746 4Fe-4S dicluster domain vfu_A00282 PF12801 4Fe-4S binding domain vfu_A00282 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase vfu_A00283 PF01636 Phosphotransferase enzyme family vfu_A00284 PF01323 DSBA-like thioredoxin domain vfu_A00285 PF01553 Acyltransferase vfu_A00286 PF01078 Magnesium chelatase, subunit ChlI vfu_A00286 PF13335 Magnesium chelatase, subunit ChlI C-terminal vfu_A00288 PF00205 Thiamine pyrophosphate enzyme, central domain vfu_A00288 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain vfu_A00288 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain vfu_A00290 PF01063 Amino-transferase class IV vfu_A00291 PF00920 Dehydratase family vfu_A00292 PF00291 Pyridoxal-phosphate dependent enzyme vfu_A00292 PF00585 C-terminal regulatory domain of Threonine dehydratase vfu_A00293 PF00107 Zinc-binding dehydrogenase vfu_A00293 PF08240 Alcohol dehydrogenase GroES-like domain vfu_A00294 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A00294 PF03466 LysR substrate binding domain vfu_A00297 PF00990 Diguanylate cyclase, GGDEF domain vfu_A00298 PF00990 Diguanylate cyclase, GGDEF domain vfu_A00298 PF17156 Gammaproteobacterial periplasmic sensor domain vfu_A00300 PF01206 Sulfurtransferase TusA vfu_A00302 PF01169 Uncharacterized protein family UPF0016 vfu_A00303 PF02091 Glycyl-tRNA synthetase alpha subunit vfu_A00304 PF05746 DALR anticodon binding domain vfu_A00304 PF02092 Glycyl-tRNA synthetase beta subunit vfu_A00305 PF00155 Aminotransferase class I and II vfu_A00306 PF00011 Hsp20/alpha crystallin family vfu_A00310 PF01751 Toprim domain vfu_A00310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A00310 PF18053 DNA gyrase B subunit insert domain vfu_A00310 PF00986 DNA gyrase B subunit, carboxyl terminus vfu_A00310 PF00204 DNA gyrase B vfu_A00311 PF02463 RecF/RecN/SMC N terminal domain vfu_A00312 PF02768 DNA polymerase III beta subunit, C-terminal domain vfu_A00312 PF02767 DNA polymerase III beta subunit, central domain vfu_A00312 PF00712 DNA polymerase III beta subunit, N-terminal domain vfu_A00313 PF00308 Bacterial dnaA protein vfu_A00313 PF11638 DnaA N-terminal domain vfu_A00313 PF08299 Bacterial dnaA protein helix-turn-helix vfu_A00314 PF00497 Bacterial extracellular solute-binding proteins, family 3 vfu_A00315 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A00316 PF00005 ABC transporter vfu_A00317 PF00468 Ribosomal protein L34 vfu_A00318 PF00825 Ribonuclease P vfu_A00319 PF02096 60Kd inner membrane protein vfu_A00319 PF14849 YidC periplasmic domain vfu_A00320 PF01926 50S ribosome-binding GTPase vfu_A00320 PF12631 MnmE helical domain vfu_A00320 PF10396 GTP-binding protein TrmE N-terminus vfu_A00321 PF00893 Small Multidrug Resistance protein vfu_A00322 PF00893 Small Multidrug Resistance protein vfu_A00324 PF06130 Phosphate propanoyltransferase vfu_A00325 PF00936 BMC domain vfu_A00326 PF13187 4Fe-4S dicluster domain vfu_A00326 PF04055 Radical SAM superfamily vfu_A00327 PF01228 Glycine radical vfu_A00327 PF02901 Pyruvate formate lyase-like vfu_A00328 PF00465 Iron-containing alcohol dehydrogenase vfu_A00330 PF00465 Iron-containing alcohol dehydrogenase vfu_A00330 PF00171 Aldehyde dehydrogenase family vfu_A00331 PF00936 BMC domain vfu_A00332 PF00936 BMC domain vfu_A00333 PF00936 BMC domain vfu_A00338 PF00258 Flavodoxin vfu_A00339 PF13932 GidA associated domain vfu_A00339 PF01134 Glucose inhibited division protein A vfu_A00340 PF02527 rRNA small subunit methyltransferase G vfu_A00341 PF13614 AAA domain vfu_A00342 PF17762 HTH domain found in ParB protein vfu_A00342 PF02195 ParB-like nuclease domain vfu_A00343 PF03899 ATP synthase I chain vfu_A00344 PF00119 ATP synthase A chain vfu_A00345 PF00137 ATP synthase subunit C vfu_A00346 PF00430 ATP synthase B/B' CF(0) vfu_A00347 PF00213 ATP synthase delta (OSCP) subunit vfu_A00348 PF02874 ATP synthase alpha/beta family, beta-barrel domain vfu_A00348 PF00306 ATP synthase alpha/beta chain, C terminal domain vfu_A00348 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain vfu_A00349 PF00231 ATP synthase vfu_A00350 PF02874 ATP synthase alpha/beta family, beta-barrel domain vfu_A00350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain vfu_A00351 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain vfu_A00351 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain vfu_A00352 PF14602 Hexapeptide repeat of succinyl-transferase vfu_A00352 PF00132 Bacterial transferase hexapeptide (six repeats) vfu_A00352 PF12804 MobA-like NTP transferase domain vfu_A00353 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A00354 PF00497 Bacterial extracellular solute-binding proteins, family 3 vfu_A00355 PF07690 Major Facilitator Superfamily vfu_A00356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A00356 PF03466 LysR substrate binding domain vfu_A00357 PF02803 Thiolase, C-terminal domain vfu_A00357 PF00108 Thiolase, N-terminal domain vfu_A00358 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain vfu_A00358 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain vfu_A00358 PF00378 Enoyl-CoA hydratase/isomerase vfu_A00359 PF01205 Uncharacterized protein family UPF0029 vfu_A00359 PF09186 Domain of unknown function (DUF1949) vfu_A00360 PF02386 Cation transport protein vfu_A00361 PF12724 Flavodoxin domain vfu_A00366 PF07732 Multicopper oxidase vfu_A00366 PF00394 Multicopper oxidase vfu_A00366 PF07731 Multicopper oxidase vfu_A00367 PF02537 CrcB-like protein, Camphor Resistance (CrcB) vfu_A00368 PF01964 Radical SAM ThiC family vfu_A00368 PF13667 ThiC-associated domain vfu_A00369 PF02581 Thiamine monophosphate synthase vfu_A00370 PF00899 ThiF family vfu_A00372 PF05690 Thiazole biosynthesis protein ThiG vfu_A00373 PF04055 Radical SAM superfamily vfu_A00373 PF06968 Biotin and Thiamin Synthesis associated domain vfu_A00375 PF00005 ABC transporter vfu_A00375 PF00571 CBS domain vfu_A00376 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A00377 PF04069 Substrate binding domain of ABC-type glycine betaine transport system vfu_A00378 PF05199 GMC oxidoreductase vfu_A00378 PF00732 GMC oxidoreductase vfu_A00379 PF00171 Aldehyde dehydrogenase family vfu_A00382 PF01321 Creatinase/Prolidase N-terminal domain vfu_A00382 PF01321 Creatinase/Prolidase N-terminal domain vfu_A00382 PF00557 Metallopeptidase family M24 vfu_A00382 PF00557 Metallopeptidase family M24 vfu_A00383 PF03466 LysR substrate binding domain vfu_A00383 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A00384 PF07690 Major Facilitator Superfamily vfu_A00386 PF01037 Lrp/AsnC ligand binding domain vfu_A00387 PF08448 PAS fold vfu_A00387 PF00990 Diguanylate cyclase, GGDEF domain vfu_A00387 PF00563 EAL domain vfu_A00388 PF04445 Putative SAM-dependent methyltransferase vfu_A00390 PF00892 EamA-like transporter family vfu_A00391 PF00582 Universal stress protein family vfu_A00392 PF00210 Ferritin-like domain vfu_A00393 PF10625 Universal stress protein B (UspB) vfu_A00395 PF02653 Branched-chain amino acid transport system / permease component vfu_A00396 PF02653 Branched-chain amino acid transport system / permease component vfu_A00397 PF00005 ABC transporter vfu_A00398 PF13407 Periplasmic binding protein domain vfu_A00399 PF02653 Branched-chain amino acid transport system / permease component vfu_A00400 PF00005 ABC transporter vfu_A00401 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family vfu_A00402 PF00370 FGGY family of carbohydrate kinases, N-terminal domain vfu_A00402 PF02782 FGGY family of carbohydrate kinases, C-terminal domain vfu_A00403 PF00596 Class II Aldolase and Adducin N-terminal domain vfu_A00404 PF11762 L-arabinose isomerase C-terminal domain vfu_A00404 PF02610 L-arabinose isomerase vfu_A00406 PF02311 AraC-like ligand binding domain vfu_A00406 PF12833 Helix-turn-helix domain vfu_A00409 PF02646 RmuC family vfu_A00410 PF01209 ubiE/COQ5 methyltransferase family vfu_A00411 PF01209 ubiE/COQ5 methyltransferase family vfu_A00412 PF01209 ubiE/COQ5 methyltransferase family vfu_A00413 PF02036 SCP-2 sterol transfer family vfu_A00414 PF03109 ABC1 family vfu_A00416 PF02416 mttA/Hcf106 family vfu_A00417 PF00902 Sec-independent protein translocase protein (TatC) vfu_A00420 PF01026 TatD related DNase vfu_A00421 PF00490 Delta-aminolevulinic acid dehydratase vfu_A00423 PF00476 DNA polymerase family A vfu_A00423 PF01612 3'-5' exonuclease vfu_A00423 PF01367 5'-3' exonuclease, C-terminal SAM fold vfu_A00423 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain vfu_A00424 PF01926 50S ribosome-binding GTPase vfu_A00425 PF13442 Cytochrome C oxidase, cbb3-type, subunit III vfu_A00427 PF04220 Der GTPase activator (YihI) vfu_A00428 PF10675 Protein of unknown function (DUF2489) vfu_A00429 PF06969 HemN C-terminal domain vfu_A00429 PF04055 Radical SAM superfamily vfu_A00430 PF07719 Tetratricopeptide repeat vfu_A00430 PF07219 HemY protein N-terminus vfu_A00431 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase vfu_A00432 PF02602 Uroporphyrinogen-III synthase HemD vfu_A00433 PF03900 Porphobilinogen deaminase, C-terminal domain vfu_A00433 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain vfu_A00435 PF12633 Adenylate cyclase NT domain vfu_A00435 PF01295 Adenylate cyclase, class-I vfu_A00436 PF01491 Frataxin-like domain vfu_A00438 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain vfu_A00438 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain vfu_A00439 PF01678 Diaminopimelate epimerase vfu_A00440 PF04340 Protein of unknown function, DUF484 vfu_A00441 PF00589 Phage integrase family vfu_A00441 PF02899 Phage integrase, N-terminal SAM-like domain vfu_A00442 PF13419 Haloacid dehalogenase-like hydrolase vfu_A00443 PF10442 FIST C domain vfu_A00443 PF08495 FIST N domain vfu_A00443 PF00563 EAL domain vfu_A00443 PF00990 Diguanylate cyclase, GGDEF domain vfu_A00448 PF12146 Serine aminopeptidase, S33 vfu_A00449 PF01810 LysE type translocator vfu_A00450 PF00563 EAL domain vfu_A00450 PF08668 HDOD domain vfu_A00451 PF01022 Bacterial regulatory protein, arsR family vfu_A00452 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain vfu_A00452 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain vfu_A00455 PF00210 Ferritin-like domain vfu_A00464 PF01914 MarC family integral membrane protein vfu_A00467 PF02881 SRP54-type protein, helical bundle domain vfu_A00467 PF00448 SRP54-type protein, GTPase domain vfu_A00468 PF00005 ABC transporter vfu_A00469 PF18075 FtsX extracellular domain vfu_A00470 PF04542 Sigma-70 region 2 vfu_A00470 PF00140 Sigma-70 factor, region 1.2 vfu_A00470 PF04545 Sigma-70, region 4 vfu_A00471 PF00581 Rhodanese-like domain vfu_A00472 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease vfu_A00472 PF01694 Rhomboid family vfu_A00473 PF03748 Flagellar basal body-associated protein FliL vfu_A00474 PF04345 Chorismate lyase vfu_A00475 PF01040 UbiA prenyltransferase family vfu_A00476 PF01553 Acyltransferase vfu_A00478 PF01219 Prokaryotic diacylglycerol kinase vfu_A00479 PF00717 Peptidase S24-like vfu_A00479 PF01726 LexA DNA binding domain vfu_A00481 PF01554 MatE vfu_A00482 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain vfu_A00482 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_A00483 PF00440 Bacterial regulatory proteins, tetR family vfu_A00485 PF05958 tRNA (Uracil-5-)-methyltransferase vfu_A00486 PF07715 TonB-dependent Receptor Plug Domain vfu_A00486 PF00593 TonB dependent receptor vfu_A00488 PF01177 Asp/Glu/Hydantoin racemase vfu_A00492 PF00962 Adenosine/AMP deaminase vfu_A00493 PF03707 Bacterial signalling protein N terminal repeat vfu_A00493 PF00990 Diguanylate cyclase, GGDEF domain vfu_A00493 PF13188 PAS domain vfu_A00493 PF00563 EAL domain vfu_A00494 PF00072 Response regulator receiver domain vfu_A00494 PF02954 Bacterial regulatory protein, Fis family vfu_A00494 PF00158 Sigma-54 interaction domain vfu_A00495 PF00989 PAS fold vfu_A00495 PF00512 His Kinase A (phospho-acceptor) domain vfu_A00495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A00498 PF00120 Glutamine synthetase, catalytic domain vfu_A00498 PF03951 Glutamine synthetase, beta-Grasp domain vfu_A00502 PF03631 Virulence factor BrkB vfu_A00503 PF02580 D-Tyr-tRNA(Tyr) deacylase vfu_A00504 PF00583 Acetyltransferase (GNAT) family vfu_A00504 PF09500 Putative thioesterase (yiiD_Cterm) vfu_A00505 PF05170 AsmA family vfu_A00506 PF01293 Phosphoenolpyruvate carboxykinase vfu_A00507 PF01430 Hsp33 protein vfu_A00508 PF01479 S4 domain vfu_A00509 PF11356 Type II secretion system protein C vfu_A00510 PF00263 Bacterial type II and III secretion system protein vfu_A00510 PF03958 Bacterial type II/III secretion system short domain vfu_A00511 PF00437 Type II/IV secretion system protein vfu_A00512 PF00437 Type II/IV secretion system protein vfu_A00513 PF00482 Type II secretion system (T2SS), protein F vfu_A00514 PF08334 Type II secretion system (T2SS), protein G vfu_A00514 PF07963 Prokaryotic N-terminal methylation motif vfu_A00515 PF12019 Type II transport protein GspH vfu_A00516 PF07963 Prokaryotic N-terminal methylation motif vfu_A00516 PF02501 Type II secretion system (T2SS), protein I vfu_A00517 PF07963 Prokaryotic N-terminal methylation motif vfu_A00517 PF11612 Type II secretion system (T2SS), protein J vfu_A00518 PF03934 Type II secretion system (T2SS), protein K vfu_A00519 PF05134 Type II secretion system (T2SS), protein L vfu_A00519 PF12693 GspL periplasmic domain vfu_A00520 PF04612 Type II secretion system (T2SS), protein M vfu_A00521 PF01203 Type II secretion system (T2SS), protein N vfu_A00522 PF00459 Inositol monophosphatase family vfu_A00523 PF00293 NUDIX domain vfu_A00524 PF01106 NifU-like domain vfu_A00524 PF01521 Iron-sulphur cluster biosynthesis vfu_A00525 PF00156 Phosphoribosyl transferase domain vfu_A00526 PF00561 alpha/beta hydrolase fold vfu_A00528 PF00575 S1 RNA binding domain vfu_A00528 PF09371 Tex-like protein N-terminal domain vfu_A00528 PF16921 Tex protein YqgF-like domain vfu_A00528 PF17674 HHH domain vfu_A00529 PF16921 Tex protein YqgF-like domain vfu_A00529 PF17674 HHH domain vfu_A00529 PF00575 S1 RNA binding domain vfu_A00529 PF09371 Tex-like protein N-terminal domain vfu_A00531 PF01272 Transcription elongation factor, GreA/GreB, C-term vfu_A00531 PF03449 Transcription elongation factor, N-terminal vfu_A00532 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family vfu_A00532 PF00356 Bacterial regulatory proteins, lacI family vfu_A00533 PF00920 Dehydratase family vfu_A00534 PF01202 Shikimate kinase vfu_A00535 PF02447 GntP family permease vfu_A00536 PF01081 KDPG and KHG aldolase vfu_A00538 PF00072 Response regulator receiver domain vfu_A00538 PF00486 Transcriptional regulatory protein, C terminal vfu_A00539 PF00512 His Kinase A (phospho-acceptor) domain vfu_A00539 PF00672 HAMP domain vfu_A00539 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A00541 PF00860 Permease family vfu_A00542 PF00270 DEAD/DEAH box helicase vfu_A00542 PF00271 Helicase conserved C-terminal domain vfu_A00542 PF17191 RecG wedge domain vfu_A00543 PF12105 SpoU, rRNA methylase, C-terminal vfu_A00543 PF00588 SpoU rRNA Methylase family vfu_A00544 PF02824 TGS domain vfu_A00544 PF04607 Region found in RelA / SpoT proteins vfu_A00544 PF13291 ACT domain vfu_A00545 PF01192 RNA polymerase Rpb6 vfu_A00546 PF00625 Guanylate kinase vfu_A00548 PF02592 Putative vitamin uptake transporter vfu_A00549 PF00474 Sodium:solute symporter family vfu_A00551 PF03471 Transporter associated domain vfu_A00551 PF00999 Sodium/hydrogen exchanger family vfu_A00551 PF02080 TrkA-C domain vfu_A00552 PF00196 Bacterial regulatory proteins, luxR family vfu_A00552 PF00072 Response regulator receiver domain vfu_A00553 PF18494 Pullulanase Ins domain vfu_A00553 PF11852 Domain of unknown function (DUF3372) vfu_A00553 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) vfu_A00553 PF03714 Bacterial pullanase-associated domain vfu_A00553 PF17967 Pullulanase N2 domain vfu_A00554 PF02683 Cytochrome C biogenesis protein transmembrane region vfu_A00554 PF11412 Disulphide bond corrector protein DsbC vfu_A00556 PF02863 Arginine repressor, C-terminal domain vfu_A00556 PF01316 Arginine repressor, DNA binding domain vfu_A00558 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain vfu_A00558 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain vfu_A00559 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain vfu_A00559 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain vfu_A00561 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain vfu_A00561 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain vfu_A00562 PF00696 Amino acid kinase family vfu_A00565 PF03606 C4-dicarboxylate anaerobic carrier vfu_A00566 PF03605 Anaerobic c4-dicarboxylate membrane transporter vfu_A00567 PF00206 Lyase vfu_A00567 PF10415 Fumarase C C-terminus vfu_A00568 PF17158 Membrane-associated sensor, integral membrane domain vfu_A00568 PF00990 Diguanylate cyclase, GGDEF domain vfu_A00569 PF04186 FxsA cytoplasmic membrane protein vfu_A00570 PF00588 SpoU rRNA Methylase family vfu_A00571 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain vfu_A00571 PF02777 Iron/manganese superoxide dismutases, C-terminal domain vfu_A00572 PF00512 His Kinase A (phospho-acceptor) domain vfu_A00572 PF16527 Two-component sensor protein CpxA, periplasmic domain vfu_A00572 PF00672 HAMP domain vfu_A00572 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A00573 PF00486 Transcriptional regulatory protein, C terminal vfu_A00573 PF00072 Response regulator receiver domain vfu_A00575 PF16916 Dimerisation domain of Zinc Transporter vfu_A00575 PF01545 Cation efflux family vfu_A00576 PF00365 Phosphofructokinase vfu_A00577 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded vfu_A00580 PF02219 Methylenetetrahydrofolate reductase vfu_A00581 PF03447 Homoserine dehydrogenase, NAD binding domain vfu_A00581 PF00742 Homoserine dehydrogenase vfu_A00581 PF00696 Amino acid kinase family vfu_A00582 PF01053 Cys/Met metabolism PLP-dependent enzyme vfu_A00583 PF01340 Met Apo-repressor, MetJ vfu_A00584 PF00390 Malic enzyme, N-terminal domain vfu_A00584 PF03949 Malic enzyme, NAD binding domain vfu_A00585 PF01197 Ribosomal protein L31 vfu_A00586 PF00271 Helicase conserved C-terminal domain vfu_A00586 PF00270 DEAD/DEAH box helicase vfu_A00586 PF17764 3′ DNA-binding domain (3′BD) vfu_A00586 PF18319 PriA DNA helicase Cys-rich region (CRR) domain vfu_A00586 PF18074 Primosomal protein N C-terminal domain vfu_A00587 PF00356 Bacterial regulatory proteins, lacI family vfu_A00589 PF00227 Proteasome subunit vfu_A00591 PF07724 AAA domain (Cdc48 subfamily) vfu_A00591 PF00004 ATPase family associated with various cellular activities (AAA) vfu_A00591 PF10431 C-terminal, D2-small domain, of ClpB protein vfu_A00592 PF01040 UbiA prenyltransferase family vfu_A00593 PF03737 Aldolase/RraA vfu_A00594 PF01554 MatE vfu_A00596 PF00121 Triosephosphate isomerase vfu_A00601 PF00166 Chaperonin 10 Kd subunit vfu_A00602 PF00118 TCP-1/cpn60 chaperonin family vfu_A00603 PF00005 ABC transporter vfu_A00605 PF02308 MgtC family vfu_A00606 PF04055 Radical SAM superfamily vfu_A00607 PF01132 Elongation factor P (EF-P) OB domain vfu_A00607 PF08207 Elongation factor P (EF-P) KOW-like domain vfu_A00607 PF09285 Elongation factor P, C-terminal vfu_A00608 PF02313 Fumarate reductase subunit D vfu_A00609 PF02300 Fumarate reductase subunit C vfu_A00610 PF13183 4Fe-4S dicluster domain vfu_A00610 PF13085 2Fe-2S iron-sulfur cluster binding domain vfu_A00611 PF02910 Fumarate reductase flavoprotein C-term vfu_A00611 PF00890 FAD binding domain vfu_A00612 PF00152 tRNA synthetases class II (D, K and N) vfu_A00613 PF00581 Rhodanese-like domain vfu_A00614 PF02556 Preprotein translocase subunit SecB vfu_A00615 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus vfu_A00615 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus vfu_A00616 PF06426 Serine acetyltransferase, N-terminal vfu_A00616 PF00132 Bacterial transferase hexapeptide (six repeats) vfu_A00618 PF00311 Phosphoenolpyruvate carboxylase vfu_A00619 PF01546 Peptidase family M20/M25/M40 vfu_A00619 PF07687 Peptidase dimerisation domain vfu_A00620 PF02774 Semialdehyde dehydrogenase, dimerisation domain vfu_A00620 PF01118 Semialdehyde dehydrogenase, NAD binding domain vfu_A00621 PF00696 Amino acid kinase family vfu_A00622 PF00764 Arginosuccinate synthase vfu_A00623 PF14698 Argininosuccinate lyase C-terminal vfu_A00623 PF00583 Acetyltransferase (GNAT) family vfu_A00623 PF00206 Lyase vfu_A00624 PF00583 Acetyltransferase (GNAT) family vfu_A00624 PF00206 Lyase vfu_A00624 PF14698 Argininosuccinate lyase C-terminal vfu_A00626 PF00462 Glutaredoxin vfu_A00626 PF08534 Redoxin vfu_A00627 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A00627 PF03466 LysR substrate binding domain vfu_A00628 PF17092 Penicillin-binding protein OB-like domain vfu_A00628 PF00912 Transglycosylase vfu_A00628 PF00905 Penicillin binding protein transpeptidase domain vfu_A00633 PF07660 Secretin and TonB N terminus short domain vfu_A00633 PF03958 Bacterial type II/III secretion system short domain vfu_A00633 PF00263 Bacterial type II and III secretion system protein vfu_A00633 PF11741 AMIN domain vfu_A00634 PF01202 Shikimate kinase vfu_A00635 PF01761 3-dehydroquinate synthase vfu_A00637 PF02086 D12 class N6 adenine-specific DNA methyltransferase vfu_A00638 PF00834 Ribulose-phosphate 3 epimerase family vfu_A00639 PF13419 Haloacid dehalogenase-like hydrolase vfu_A00640 PF00579 tRNA synthetases class I (W and Y) vfu_A00643 PF00117 Glutamine amidotransferase class-I vfu_A00644 PF00202 Aminotransferase class-III vfu_A00645 PF04958 Arginine N-succinyltransferase beta subunit vfu_A00646 PF00171 Aldehyde dehydrogenase family vfu_A00648 PF00027 Cyclic nucleotide-binding domain vfu_A00648 PF13545 Crp-like helix-turn-helix domain vfu_A00649 PF00485 Phosphoribulokinase / Uridine kinase family vfu_A00650 PF06794 Uncharacterised protein family (UPF0270) vfu_A00651 PF00561 alpha/beta hydrolase fold vfu_A00653 PF12848 ABC transporter vfu_A00653 PF00005 ABC transporter vfu_A00654 PF02525 Flavodoxin-like fold vfu_A00655 PF00999 Sodium/hydrogen exchanger family vfu_A00655 PF02254 TrkA-N domain vfu_A00656 PF02254 TrkA-N domain vfu_A00656 PF00999 Sodium/hydrogen exchanger family vfu_A00657 PF09526 Probable metal-binding protein (DUF2387) vfu_A00658 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase vfu_A00659 PF01112 Asparaginase vfu_A00660 PF00709 Adenylosuccinate synthetase vfu_A00661 PF08238 Sel1 repeat vfu_A00662 PF11893 Domain of unknown function (DUF3413) vfu_A00662 PF00884 Sulfatase vfu_A00663 PF00773 RNB domain vfu_A00663 PF08461 Ribonuclease R winged-helix domain vfu_A00663 PF08206 Ribonuclease B OB domain vfu_A00663 PF00575 S1 RNA binding domain vfu_A00663 PF17876 Cold shock domain vfu_A00664 PF00575 S1 RNA binding domain vfu_A00664 PF08461 Ribonuclease R winged-helix domain vfu_A00664 PF08206 Ribonuclease B OB domain vfu_A00664 PF00773 RNB domain vfu_A00664 PF17876 Cold shock domain vfu_A00665 PF00588 SpoU rRNA Methylase family vfu_A00665 PF08032 RNA 2'-O ribose methyltransferase substrate binding vfu_A00666 PF00338 Ribosomal protein S10p/S20e vfu_A00667 PF00297 Ribosomal protein L3 vfu_A00668 PF00573 Ribosomal protein L4/L1 family vfu_A00669 PF00276 Ribosomal protein L23 vfu_A00670 PF00181 Ribosomal Proteins L2, RNA binding domain vfu_A00670 PF03947 Ribosomal Proteins L2, C-terminal domain vfu_A00671 PF00203 Ribosomal protein S19 vfu_A00672 PF00237 Ribosomal protein L22p/L17e vfu_A00673 PF00189 Ribosomal protein S3, C-terminal domain vfu_A00673 PF07650 KH domain vfu_A00674 PF00252 Ribosomal protein L16p/L10e vfu_A00675 PF00831 Ribosomal L29 protein vfu_A00676 PF00366 Ribosomal protein S17 vfu_A00677 PF00238 Ribosomal protein L14p/L23e vfu_A00678 PF00467 KOW motif vfu_A00678 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 vfu_A00679 PF00281 Ribosomal protein L5 vfu_A00679 PF00673 ribosomal L5P family C-terminus vfu_A00680 PF00253 Ribosomal protein S14p/S29e vfu_A00681 PF00410 Ribosomal protein S8 vfu_A00682 PF00347 Ribosomal protein L6 vfu_A00683 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast vfu_A00684 PF03719 Ribosomal protein S5, C-terminal domain vfu_A00684 PF00333 Ribosomal protein S5, N-terminal domain vfu_A00685 PF00327 Ribosomal protein L30p/L7e vfu_A00687 PF00344 SecY translocase vfu_A00688 PF00444 Ribosomal protein L36 vfu_A00689 PF00416 Ribosomal protein S13/S18 vfu_A00690 PF01479 S4 domain vfu_A00690 PF00163 Ribosomal protein S4/S9 N-terminal domain vfu_A00691 PF01000 RNA polymerase Rpb3/RpoA insert domain vfu_A00691 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain vfu_A00691 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain vfu_A00694 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase vfu_A00694 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase vfu_A00695 PF08525 Opacity-associated protein A N-terminal motif vfu_A00695 PF04225 Opacity-associated protein A LysM-like domain vfu_A00696 PF13673 Acetyltransferase (GNAT) domain vfu_A00697 PF00271 Helicase conserved C-terminal domain vfu_A00697 PF00270 DEAD/DEAH box helicase vfu_A00697 PF03880 DbpA RNA binding domain vfu_A00699 PF00149 Calcineurin-like phosphoesterase vfu_A00699 PF02872 5'-nucleotidase, C-terminal domain vfu_A00700 PF14824 Sirohaem biosynthesis protein central vfu_A00700 PF10414 Sirohaem synthase dimerisation region vfu_A00700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases vfu_A00701 PF01507 Phosphoadenosine phosphosulfate reductase family vfu_A00702 PF01507 Phosphoadenosine phosphosulfate reductase family vfu_A00703 PF00009 Elongation factor Tu GTP binding domain vfu_A00704 PF03600 Citrate transporter vfu_A00704 PF02080 TrkA-C domain vfu_A00710 PF02687 FtsX-like permease family vfu_A00710 PF00005 ABC transporter vfu_A00710 PF12704 MacB-like periplasmic core domain vfu_A00713 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) vfu_A00714 PF01625 Peptide methionine sulfoxide reductase vfu_A00715 PF17243 POTRA domain TamA domain 1 vfu_A00715 PF01103 Surface antigen vfu_A00715 PF07244 Surface antigen variable number repeat vfu_A00716 PF04357 TamB, inner membrane protein subunit of TAM complex vfu_A00717 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like vfu_A00719 PF00719 Inorganic pyrophosphatase vfu_A00720 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain vfu_A00721 PF02875 Mur ligase family, glutamate ligase domain vfu_A00721 PF08245 Mur ligase middle domain vfu_A00721 PF01225 Mur ligase family, catalytic domain vfu_A00722 PF02441 Flavoprotein vfu_A00724 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A00725 PF00005 ABC transporter vfu_A00726 PF04751 Protein of unknown function (DUF615) vfu_A00727 PF01523 Putative modulator of DNA gyrase vfu_A00728 PF01769 Divalent cation transporter vfu_A00728 PF03448 MgtE intracellular N domain vfu_A00728 PF00571 CBS domain vfu_A00729 PF00381 PTS HPr component phosphorylation site vfu_A00730 PF03668 P-loop ATPase protein family vfu_A00731 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 vfu_A00732 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein vfu_A00733 PF00309 Sigma-54 factor, Activator interacting domain (AID) vfu_A00733 PF04963 Sigma-54 factor, core binding domain vfu_A00733 PF04552 Sigma-54, DNA binding domain vfu_A00734 PF12399 Branched-chain amino acid ATP-binding cassette transporter vfu_A00734 PF00005 ABC transporter vfu_A00735 PF03968 OstA-like protein vfu_A00738 PF01380 SIS domain vfu_A00738 PF00571 CBS domain vfu_A00739 PF01699 Sodium/calcium exchanger protein vfu_A00740 PF00005 ABC transporter vfu_A00741 PF02405 Permease MlaE vfu_A00742 PF02470 MlaD protein vfu_A00743 PF05494 MlaC protein vfu_A00744 PF13466 STAS domain vfu_A00745 PF01722 BolA-like protein vfu_A00746 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) vfu_A00747 PF01553 Acyltransferase vfu_A00748 PF01042 Endoribonuclease L-PSP vfu_A00749 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain vfu_A00749 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain vfu_A00750 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain vfu_A00750 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain vfu_A00751 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain vfu_A00751 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain vfu_A00752 PF13638 PIN domain vfu_A00752 PF02562 PhoH-like protein vfu_A00753 PF18337 RapA N-terminal Tudor like domain vfu_A00753 PF00176 SNF2 family N-terminal domain vfu_A00753 PF12137 RNA polymerase recycling family C-terminal vfu_A00753 PF18339 RapA N-terminal Tudor like domain 1 vfu_A00753 PF00271 Helicase conserved C-terminal domain vfu_A00755 PF00849 RNA pseudouridylate synthase vfu_A00756 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain vfu_A00756 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain vfu_A00757 PF10458 Valyl tRNA synthetase tRNA binding arm vfu_A00757 PF00133 tRNA synthetases class I (I, L, M and V) vfu_A00757 PF08264 Anticodon-binding domain of tRNA vfu_A00758 PF00133 tRNA synthetases class I (I, L, M and V) vfu_A00758 PF08264 Anticodon-binding domain of tRNA vfu_A00758 PF10458 Valyl tRNA synthetase tRNA binding arm vfu_A00759 PF00133 tRNA synthetases class I (I, L, M and V) vfu_A00759 PF08264 Anticodon-binding domain of tRNA vfu_A00759 PF10458 Valyl tRNA synthetase tRNA binding arm vfu_A00761 PF00883 Cytosol aminopeptidase family, catalytic domain vfu_A00761 PF02789 Cytosol aminopeptidase family, N-terminal domain vfu_A00762 PF03739 Lipopolysaccharide export system permease LptF/LptG vfu_A00763 PF03739 Lipopolysaccharide export system permease LptF/LptG vfu_A00765 PF07694 5TMR of 5TMR-LYT vfu_A00765 PF00990 Diguanylate cyclase, GGDEF domain vfu_A00779 PF00816 H-NS histone family vfu_A00788 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A00788 PF03466 LysR substrate binding domain vfu_A00790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A00790 PF00672 HAMP domain vfu_A00790 PF17200 Single Cache domain 2 vfu_A00791 PF00990 Diguanylate cyclase, GGDEF domain vfu_A00791 PF00563 EAL domain vfu_A00791 PF03707 Bacterial signalling protein N terminal repeat vfu_A00797 PF14226 non-haem dioxygenase in morphine synthesis N-terminal vfu_A00797 PF03171 2OG-Fe(II) oxygenase superfamily vfu_A00800 PF00072 Response regulator receiver domain vfu_A00805 PF00694 Aconitase C-terminal domain vfu_A00806 PF00330 Aconitase family (aconitate hydratase) vfu_A00807 PF00180 Isocitrate/isopropylmalate dehydrogenase vfu_A00808 PF00682 HMGL-like vfu_A00808 PF08502 LeuA allosteric (dimerisation) domain vfu_A00810 PF01569 PAP2 superfamily vfu_A00812 PF03466 LysR substrate binding domain vfu_A00812 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A00813 PF00501 AMP-binding enzyme vfu_A00814 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain vfu_A00814 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain vfu_A00814 PF00205 Thiamine pyrophosphate enzyme, central domain vfu_A00815 PF10369 Small subunit of acetolactate synthase vfu_A00816 PF01842 ACT domain vfu_A00816 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain vfu_A00816 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain vfu_A00817 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) vfu_A00818 PF01812 5-formyltetrahydrofolate cyclo-ligase family vfu_A00819 PF05164 Cell division protein ZapA vfu_A00820 PF03695 Uncharacterised protein family (UPF0149) vfu_A00821 PF01494 FAD binding domain vfu_A00822 PF01494 FAD binding domain vfu_A00827 PF03937 Flavinator of succinate dehydrogenase vfu_A00829 PF00890 FAD binding domain vfu_A00829 PF02910 Fumarate reductase flavoprotein C-term vfu_A00830 PF08281 Sigma-70, region 4 vfu_A00830 PF04542 Sigma-70 region 2 vfu_A00831 PF03873 Anti sigma-E protein RseA, C-terminal domain vfu_A00831 PF03872 Anti sigma-E protein RseA, N-terminal domain vfu_A00832 PF17188 MucB/RseB C-terminal domain vfu_A00832 PF03888 MucB/RseB N-terminal domain vfu_A00834 PF00009 Elongation factor Tu GTP binding domain vfu_A00834 PF06421 GTP-binding protein LepA C-terminus vfu_A00834 PF00679 Elongation factor G C-terminus vfu_A00834 PF03144 Elongation factor Tu domain 2 vfu_A00835 PF10502 Signal peptidase, peptidase S26 vfu_A00836 PF14622 Ribonuclease-III-like vfu_A00836 PF00035 Double-stranded RNA binding motif vfu_A00837 PF01926 50S ribosome-binding GTPase vfu_A00837 PF07650 KH domain vfu_A00838 PF11967 Recombination protein O N terminal vfu_A00838 PF02565 Recombination protein O C terminal vfu_A00839 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ vfu_A00840 PF01648 4'-phosphopantetheinyl transferase superfamily vfu_A00841 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) vfu_A00841 PF00512 His Kinase A (phospho-acceptor) domain vfu_A00841 PF01627 Hpt domain vfu_A00841 PF00072 Response regulator receiver domain vfu_A00841 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A00841 PF00672 HAMP domain vfu_A00842 PF01938 TRAM domain vfu_A00842 PF05958 tRNA (Uracil-5-)-methyltransferase vfu_A00843 PF02824 TGS domain vfu_A00843 PF13291 ACT domain vfu_A00843 PF04607 Region found in RelA / SpoT proteins vfu_A00844 PF03819 MazG nucleotide pyrophosphohydrolase domain vfu_A00845 PF00117 Glutamine amidotransferase class-I vfu_A00845 PF06418 CTP synthase N-terminus vfu_A00846 PF00113 Enolase, C-terminal TIM barrel domain vfu_A00846 PF03952 Enolase, N-terminal domain vfu_A00847 PF01743 Poly A polymerase head domain vfu_A00847 PF12627 Probable RNA and SrmB- binding site of polymerase A vfu_A00847 PF01966 HD domain vfu_A00848 PF13401 AAA domain vfu_A00848 PF01471 Putative peptidoglycan binding domain vfu_A00850 PF08239 Bacterial SH3 domain vfu_A00851 PF01384 Phosphate transporter family vfu_A00852 PF01865 Protein of unknown function DUF47 vfu_A00853 PF01928 CYTH domain vfu_A00854 PF07885 Ion channel vfu_A00855 PF02743 Cache domain vfu_A00855 PF00672 HAMP domain vfu_A00855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A00856 PF08335 GlnD PII-uridylyltransferase vfu_A00856 PF03710 Glutamate-ammonia ligase adenylyltransferase vfu_A00857 PF08335 GlnD PII-uridylyltransferase vfu_A00857 PF03710 Glutamate-ammonia ligase adenylyltransferase vfu_A00858 PF00294 pfkB family carbohydrate kinase vfu_A00858 PF01467 Cytidylyltransferase-like vfu_A00859 PF02321 Outer membrane efflux protein vfu_A00860 PF00293 NUDIX domain vfu_A00861 PF06853 Protein of unknown function (DUF1249) vfu_A00862 PF00149 Calcineurin-like phosphoesterase vfu_A00863 PF05728 Uncharacterised protein family (UPF0227) vfu_A00864 PF00204 DNA gyrase B vfu_A00864 PF00986 DNA gyrase B subunit, carboxyl terminus vfu_A00864 PF01751 Toprim domain vfu_A00864 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A00865 PF03989 DNA gyrase C-terminal domain, beta-propeller vfu_A00865 PF00521 DNA gyrase/topoisomerase IV, subunit A vfu_A00866 PF03884 DNA gyrase inhibitor YacG vfu_A00867 PF07072 Cell division protein vfu_A00868 PF01121 Dephospho-CoA kinase vfu_A00869 PF06750 Bacterial Peptidase A24 N-terminal domain vfu_A00869 PF01478 Type IV leader peptidase family vfu_A00870 PF00482 Type II secretion system (T2SS), protein F vfu_A00871 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain vfu_A00871 PF00437 Type II/IV secretion system protein vfu_A00872 PF07963 Prokaryotic N-terminal methylation motif vfu_A00872 PF00114 Pilin (bacterial filament) vfu_A00873 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain vfu_A00873 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain vfu_A00874 PF01510 N-acetylmuramoyl-L-alanine amidase vfu_A00875 PF00258 Flavodoxin vfu_A00876 PF02899 Phage integrase, N-terminal SAM-like domain vfu_A00876 PF00589 Phage integrase family vfu_A00877 PF10411 Disulfide bond isomerase protein N-terminus vfu_A00877 PF13098 Thioredoxin-like domain vfu_A00878 PF17768 RecJ OB domain vfu_A00878 PF02272 DHHA1 domain vfu_A00878 PF01368 DHH family vfu_A00879 PF07729 FCD domain vfu_A00879 PF00392 Bacterial regulatory proteins, gntR family vfu_A00880 PF00456 Transketolase, thiamine diphosphate binding domain vfu_A00880 PF17831 Pyruvate dehydrogenase E1 component middle domain vfu_A00881 PF00364 Biotin-requiring enzyme vfu_A00881 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) vfu_A00881 PF02817 e3 binding domain vfu_A00882 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain vfu_A00882 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_A00883 PF00440 Bacterial regulatory proteins, tetR family vfu_A00885 PF00156 Phosphoribosyl transferase domain vfu_A00886 PF00484 Carbonic anhydrase vfu_A00887 PF00005 ABC transporter vfu_A00888 PF01061 ABC-2 type transporter vfu_A00889 PF02569 Pantoate-beta-alanine ligase vfu_A00890 PF02548 Ketopantoate hydroxymethyltransferase vfu_A00891 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) vfu_A00892 PF01743 Poly A polymerase head domain vfu_A00892 PF12627 Probable RNA and SrmB- binding site of polymerase A vfu_A00892 PF12626 Polymerase A arginine-rich C-terminus vfu_A00893 PF00749 tRNA synthetases class I (E and Q), catalytic domain vfu_A00894 PF01258 Prokaryotic dksA/traR C4-type zinc finger vfu_A00895 PF17746 SfsA N-terminal OB domain vfu_A00895 PF03749 Sugar fermentation stimulation protein RE domain vfu_A00896 PF00271 Helicase conserved C-terminal domain vfu_A00896 PF04408 Helicase associated domain (HA2) vfu_A00896 PF00270 DEAD/DEAH box helicase vfu_A00896 PF08482 ATP-dependent helicase C-terminal vfu_A00897 PF14814 Bifunctional transglycosylase second domain vfu_A00897 PF00912 Transglycosylase vfu_A00897 PF00905 Penicillin binding protein transpeptidase domain vfu_A00898 PF01734 Patatin-like phospholipase vfu_A00899 PF00330 Aconitase family (aconitate hydratase) vfu_A00899 PF11791 Aconitate B N-terminal domain vfu_A00899 PF06434 Aconitate hydratase 2 N-terminus vfu_A00900 PF06062 Uncharacterised protein family (UPF0231) vfu_A00901 PF00543 Nitrogen regulatory protein P-II vfu_A00902 PF00909 Ammonium Transporter Family vfu_A00903 PF13416 Bacterial extracellular solute-binding protein vfu_A00905 PF00005 ABC transporter vfu_A00906 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II vfu_A00906 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III vfu_A00906 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain vfu_A00906 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I vfu_A00907 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain vfu_A00907 PF06165 Glycosyltransferase family 36 vfu_A00908 PF02838 Glycosyl hydrolase family 20, domain 2 vfu_A00908 PF00728 Glycosyl hydrolase family 20, catalytic domain vfu_A00909 PF01869 BadF/BadG/BcrA/BcrD ATPase family vfu_A00911 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vfu_A00911 PF00005 ABC transporter vfu_A00912 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vfu_A00912 PF00005 ABC transporter vfu_A00913 PF12911 N-terminal TM domain of oligopeptide transport permease C vfu_A00913 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A00914 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A00915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vfu_A00916 PF00072 Response regulator receiver domain vfu_A00916 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A00916 PF09308 LuxQ, periplasmic vfu_A00916 PF00512 His Kinase A (phospho-acceptor) domain vfu_A00917 PF05175 Methyltransferase small domain vfu_A00917 PF08468 Methyltransferase small domain N-terminal vfu_A00918 PF01594 AI-2E family transporter vfu_A00920 PF00202 Aminotransferase class-III vfu_A00921 PF01521 Iron-sulphur cluster biosynthesis vfu_A00923 PF00873 AcrB/AcrD/AcrF family vfu_A00924 PF04225 Opacity-associated protein A LysM-like domain vfu_A00924 PF01551 Peptidase family M23 vfu_A00925 PF01479 S4 domain vfu_A00925 PF00579 tRNA synthetases class I (W and Y) vfu_A00927 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family vfu_A00928 PF13609 Gram-negative porin vfu_A00930 PF03449 Transcription elongation factor, N-terminal vfu_A00930 PF01272 Transcription elongation factor, GreA/GreB, C-term vfu_A00931 PF01985 CRS1 / YhbY (CRM) domain vfu_A00933 PF01434 Peptidase family M41 vfu_A00933 PF00004 ATPase family associated with various cellular activities (AAA) vfu_A00933 PF17862 AAA+ lid domain vfu_A00933 PF06480 FtsH Extracellular vfu_A00934 PF01434 Peptidase family M41 vfu_A00934 PF06480 FtsH Extracellular vfu_A00934 PF17862 AAA+ lid domain vfu_A00934 PF00004 ATPase family associated with various cellular activities (AAA) vfu_A00935 PF00809 Pterin binding enzyme vfu_A00936 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II vfu_A00936 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III vfu_A00936 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I vfu_A00936 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain vfu_A00937 PF03840 Preprotein translocase SecG subunit vfu_A00938 PF17384 RimP C-terminal SH3 domain vfu_A00938 PF02576 RimP N-terminal domain vfu_A00939 PF13184 NusA-like KH domain vfu_A00939 PF00575 S1 RNA binding domain vfu_A00939 PF08529 NusA N-terminal domain vfu_A00940 PF00009 Elongation factor Tu GTP binding domain vfu_A00940 PF11987 Translation-initiation factor 2 vfu_A00940 PF08364 Bacterial translation initiation factor IF-2 associated region vfu_A00940 PF04760 Translation initiation factor IF-2, N-terminal region vfu_A00941 PF02033 Ribosome-binding factor A vfu_A00942 PF16198 tRNA pseudouridylate synthase B C-terminal domain vfu_A00942 PF01509 TruB family pseudouridylate synthase (N terminal domain) vfu_A00942 PF09157 Pseudouridine synthase II TruB, C-terminal vfu_A00943 PF00312 Ribosomal protein S15 vfu_A00944 PF01138 3' exoribonuclease family, domain 1 vfu_A00944 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain vfu_A00944 PF00013 KH domain vfu_A00944 PF00575 S1 RNA binding domain vfu_A00944 PF03725 3' exoribonuclease family, domain 2 vfu_A00945 PF13181 Tetratricopeptide repeat vfu_A00945 PF07719 Tetratricopeptide repeat vfu_A00947 PF01554 MatE vfu_A00950 PF00990 Diguanylate cyclase, GGDEF domain vfu_A00950 PF00563 EAL domain vfu_A00950 PF03707 Bacterial signalling protein N terminal repeat vfu_A00952 PF13508 Acetyltransferase (GNAT) domain vfu_A00955 PF03707 Bacterial signalling protein N terminal repeat vfu_A00955 PF00990 Diguanylate cyclase, GGDEF domain vfu_A00955 PF00563 EAL domain vfu_A00956 PF03144 Elongation factor Tu domain 2 vfu_A00956 PF16658 Class II release factor RF3, C-terminal domain vfu_A00956 PF00009 Elongation factor Tu GTP binding domain vfu_A00957 PF00270 DEAD/DEAH box helicase vfu_A00957 PF00271 Helicase conserved C-terminal domain vfu_A00958 PF05175 Methyltransferase small domain vfu_A00959 PF05525 Branched-chain amino acid transport protein vfu_A00961 PF03462 PCRF domain vfu_A00961 PF00472 RF-1 domain vfu_A00962 PF00152 tRNA synthetases class II (D, K and N) vfu_A00962 PF01336 OB-fold nucleic acid binding domain vfu_A00963 PF00072 Response regulator receiver domain vfu_A00963 PF00158 Sigma-54 interaction domain vfu_A00963 PF02954 Bacterial regulatory protein, Fis family vfu_A00966 PF00248 Aldo/keto reductase family vfu_A00968 PF02976 DNA mismatch repair enzyme MutH vfu_A00970 PF01590 GAF domain vfu_A00970 PF00391 PEP-utilising enzyme, mobile domain vfu_A00970 PF02896 PEP-utilising enzyme, TIM barrel domain vfu_A00970 PF05524 PEP-utilising enzyme, N-terminal vfu_A00971 PF01925 Sulfite exporter TauE/SafE vfu_A00972 PF01790 Prolipoprotein diacylglyceryl transferase vfu_A00973 PF00303 Thymidylate synthase vfu_A00974 PF02690 Na+/Pi-cotransporter vfu_A00975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A00975 PF03466 LysR substrate binding domain vfu_A00977 PF01022 Bacterial regulatory protein, arsR family vfu_A00978 PF01649 Ribosomal protein S20 vfu_A00979 PF03023 Lipid II flippase MurJ vfu_A00980 PF01687 Riboflavin kinase vfu_A00980 PF06574 FAD synthetase vfu_A00981 PF08264 Anticodon-binding domain of tRNA vfu_A00981 PF06827 Zinc finger found in FPG and IleRS vfu_A00981 PF00133 tRNA synthetases class I (I, L, M and V) vfu_A00982 PF01252 Signal peptidase (SPase) II vfu_A00983 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase vfu_A00984 PF02401 LytB protein vfu_A00985 PF02554 Carbon starvation protein CstA vfu_A00988 PF13580 SIS domain vfu_A00989 PF03702 Anhydro-N-acetylmuramic acid kinase vfu_A00990 PF00933 Glycosyl hydrolase family 3 N terminal domain vfu_A00991 PF00072 Response regulator receiver domain vfu_A00991 PF04397 LytTr DNA-binding domain vfu_A00992 PF06580 Histidine kinase vfu_A00992 PF07694 5TMR of 5TMR-LYT vfu_A00993 PF00793 DAHP synthetase I family vfu_A00994 PF01817 Chorismate mutase type II vfu_A00994 PF02153 Prephenate dehydrogenase vfu_A00995 PF07238 PilZ domain vfu_A00996 PF00005 ABC transporter vfu_A00996 PF12848 ABC transporter vfu_A00997 PF12848 ABC transporter vfu_A00997 PF00005 ABC transporter vfu_A00998 PF01464 Transglycosylase SLT domain vfu_A00998 PF14718 Soluble lytic murein transglycosylase L domain vfu_A01000 PF01931 Protein of unknown function DUF84 vfu_A01001 PF00990 Diguanylate cyclase, GGDEF domain vfu_A01001 PF00563 EAL domain vfu_A01002 PF13416 Bacterial extracellular solute-binding protein vfu_A01003 PF01817 Chorismate mutase type II vfu_A01003 PF00800 Prephenate dehydratase vfu_A01004 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein vfu_A01005 PF01464 Transglycosylase SLT domain vfu_A01006 PF13525 Outer membrane lipoprotein vfu_A01007 PF00849 RNA pseudouridylate synthase vfu_A01007 PF01479 S4 domain vfu_A01009 PF10431 C-terminal, D2-small domain, of ClpB protein vfu_A01009 PF07724 AAA domain (Cdc48 subfamily) vfu_A01009 PF17871 AAA lid domain vfu_A01009 PF02861 Clp amino terminal domain, pathogenicity island component vfu_A01009 PF00004 ATPase family associated with various cellular activities (AAA) vfu_A01011 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region vfu_A01012 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01013 PF00005 ABC transporter vfu_A01014 PF09084 NMT1/THI5 like vfu_A01016 PF01979 Amidohydrolase family vfu_A01020 PF01738 Dienelactone hydrolase family vfu_A01022 PF00881 Nitroreductase family vfu_A01023 PF07690 Major Facilitator Superfamily vfu_A01024 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD vfu_A01026 PF05175 Methyltransferase small domain vfu_A01027 PF01722 BolA-like protein vfu_A01028 PF11973 NQRA C-terminal domain vfu_A01028 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) vfu_A01029 PF03116 NQR2, RnfD, RnfE family vfu_A01030 PF04205 FMN-binding domain vfu_A01031 PF02508 Rnf-Nqr subunit, membrane protein vfu_A01032 PF02508 Rnf-Nqr subunit, membrane protein vfu_A01033 PF00175 Oxidoreductase NAD-binding domain vfu_A01033 PF00111 2Fe-2S iron-sulfur cluster binding domain vfu_A01033 PF00970 Oxidoreductase FAD-binding domain vfu_A01034 PF02424 ApbE family vfu_A01037 PF00817 impB/mucB/samB family vfu_A01037 PF11799 impB/mucB/samB family C-terminal domain vfu_A01037 PF11798 IMS family HHH motif vfu_A01039 PF00360 Phytochrome region vfu_A01039 PF00990 Diguanylate cyclase, GGDEF domain vfu_A01039 PF01590 GAF domain vfu_A01039 PF00563 EAL domain vfu_A01040 PF00209 Sodium:neurotransmitter symporter family vfu_A01042 PF18030 RimK PreATP-grasp domain vfu_A01042 PF08443 RimK-like ATP-grasp domain vfu_A01043 PF08443 RimK-like ATP-grasp domain vfu_A01043 PF18030 RimK PreATP-grasp domain vfu_A01044 PF07687 Peptidase dimerisation domain vfu_A01044 PF01546 Peptidase family M20/M25/M40 vfu_A01046 PF00392 Bacterial regulatory proteins, gntR family vfu_A01046 PF00155 Aminotransferase class I and II vfu_A01047 PF00202 Aminotransferase class-III vfu_A01048 PF00171 Aldehyde dehydrogenase family vfu_A01049 PF03480 Bacterial extracellular solute-binding protein, family 7 vfu_A01051 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component vfu_A01052 PF00860 Permease family vfu_A01053 PF00156 Phosphoribosyl transferase domain vfu_A01055 PF07417 Sigma factor-binding transcriptional regulator Crl vfu_A01056 PF01472 PUA domain vfu_A01056 PF00696 Amino acid kinase family vfu_A01057 PF00171 Aldehyde dehydrogenase family vfu_A01058 PF03477 ATP cone domain vfu_A01059 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region vfu_A01059 PF01872 RibD C-terminal domain vfu_A01060 PF00677 Lumazine binding domain vfu_A01061 PF00925 GTP cyclohydrolase II vfu_A01061 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase vfu_A01062 PF00885 6,7-dimethyl-8-ribityllumazine synthase vfu_A01063 PF01029 NusB family vfu_A01064 PF00586 AIR synthase related protein, N-terminal domain vfu_A01064 PF02769 AIR synthase related protein, C-terminal domain vfu_A01065 PF04608 Phosphatidylglycerophosphatase A vfu_A01066 PF11944 Protein of unknown function (DUF3461) vfu_A01067 PF01909 Nucleotidyltransferase domain vfu_A01067 PF01966 HD domain vfu_A01067 PF08335 GlnD PII-uridylyltransferase vfu_A01068 PF00557 Metallopeptidase family M24 vfu_A01069 PF00318 Ribosomal protein S2 vfu_A01070 PF00889 Elongation factor TS vfu_A01071 PF00696 Amino acid kinase family vfu_A01072 PF01765 Ribosome recycling factor vfu_A01073 PF01255 Putative undecaprenyl diphosphate synthase vfu_A01075 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain vfu_A01075 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase vfu_A01075 PF13288 DXP reductoisomerase C-terminal domain vfu_A01076 PF02163 Peptidase family M50 vfu_A01076 PF17820 PDZ domain vfu_A01077 PF07244 Surface antigen variable number repeat vfu_A01077 PF01103 Surface antigen vfu_A01078 PF03938 Outer membrane protein (OmpH-like) vfu_A01079 PF00132 Bacterial transferase hexapeptide (six repeats) vfu_A01079 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD vfu_A01080 PF07977 FabA-like domain vfu_A01081 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 vfu_A01081 PF00132 Bacterial transferase hexapeptide (six repeats) vfu_A01082 PF02684 Lipid-A-disaccharide synthetase vfu_A01083 PF01351 Ribonuclease HII vfu_A01084 PF17657 Bacterial DNA polymerase III alpha subunit finger domain vfu_A01084 PF02811 PHP domain vfu_A01084 PF14579 Helix-hairpin-helix motif vfu_A01084 PF07733 Bacterial DNA polymerase III alpha NTPase domain vfu_A01084 PF01336 OB-fold nucleic acid binding domain vfu_A01085 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit vfu_A01086 PF11734 TilS substrate C-terminal domain vfu_A01086 PF09179 TilS substrate binding domain vfu_A01086 PF01171 PP-loop family vfu_A01087 PF00034 Cytochrome c vfu_A01088 PF00543 Nitrogen regulatory protein P-II vfu_A01089 PF03372 Endonuclease/Exonuclease/phosphatase family vfu_A01090 PF01476 LysM domain vfu_A01090 PF01464 Transglycosylase SLT domain vfu_A01091 PF16123 Hydroxyacylglutathione hydrolase C-terminus vfu_A01091 PF00753 Metallo-beta-lactamase superfamily vfu_A01092 PF08241 Methyltransferase domain vfu_A01093 PF00075 RNase H vfu_A01094 PF00929 Exonuclease vfu_A01096 PF00441 Acyl-CoA dehydrogenase, C-terminal domain vfu_A01096 PF02770 Acyl-CoA dehydrogenase, middle domain vfu_A01096 PF02771 Acyl-CoA dehydrogenase, N-terminal domain vfu_A01096 PF09317 Domain of unknown function (DUF1974) vfu_A01097 PF13580 SIS domain vfu_A01098 PF13230 Glutamine amidotransferases class-II vfu_A01099 PF00551 Formyl transferase vfu_A01100 PF02769 AIR synthase related protein, C-terminal domain vfu_A01100 PF00586 AIR synthase related protein, N-terminal domain vfu_A01102 PF01479 S4 domain vfu_A01102 PF00849 RNA pseudouridylate synthase vfu_A01103 PF01713 Smr domain vfu_A01106 PF03173 Putative carbohydrate binding domain vfu_A01106 PF00728 Glycosyl hydrolase family 20, catalytic domain vfu_A01106 PF02838 Glycosyl hydrolase family 20, domain 2 vfu_A01106 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain vfu_A01108 PF00403 Heavy-metal-associated domain vfu_A01109 PF00749 tRNA synthetases class I (E and Q), catalytic domain vfu_A01110 PF00691 OmpA family vfu_A01110 PF01389 OmpA-like transmembrane domain vfu_A01116 PF04316 Anti-sigma-28 factor, FlgM vfu_A01118 PF00072 Response regulator receiver domain vfu_A01118 PF01584 CheW-like domain vfu_A01119 PF01739 CheR methyltransferase, SAM binding domain vfu_A01119 PF03705 CheR methyltransferase, all-alpha domain vfu_A01121 PF00460 Flagella basal body rod protein vfu_A01122 PF00460 Flagella basal body rod protein vfu_A01122 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A01123 PF03963 Flagellar hook capping protein - N-terminal region vfu_A01123 PF13860 FlgD Ig-like domain vfu_A01123 PF13861 FlgD Tudor-like domain vfu_A01124 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A01124 PF00460 Flagella basal body rod protein vfu_A01124 PF07559 Flagellar basal body protein FlaE vfu_A01125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A01125 PF00460 Flagella basal body rod protein vfu_A01126 PF00460 Flagella basal body rod protein vfu_A01126 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A01127 PF02107 Flagellar L-ring protein vfu_A01128 PF02119 Flagellar P-ring protein vfu_A01129 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase vfu_A01129 PF10135 Rod binding protein vfu_A01130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A01130 PF07196 Flagellin hook IN motif vfu_A01131 PF00669 Bacterial flagellin N-terminal helical region vfu_A01132 PF00669 Bacterial flagellin N-terminal helical region vfu_A01132 PF00700 Bacterial flagellin C-terminal helical region vfu_A01132 PF07196 Flagellin hook IN motif vfu_A01134 PF00669 Bacterial flagellin N-terminal helical region vfu_A01134 PF07196 Flagellin hook IN motif vfu_A01134 PF00700 Bacterial flagellin C-terminal helical region vfu_A01135 PF06071 Protein of unknown function (DUF933) vfu_A01135 PF01926 50S ribosome-binding GTPase vfu_A01136 PF01195 Peptidyl-tRNA hydrolase vfu_A01137 PF01195 Peptidyl-tRNA hydrolase vfu_A01138 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase vfu_A01138 PF14572 Phosphoribosyl synthetase-associated domain vfu_A01140 PF03550 Outer membrane lipoprotein LolB vfu_A01141 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain vfu_A01141 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain vfu_A01141 PF01488 Shikimate / quinate 5-dehydrogenase vfu_A01143 PF13847 Methyltransferase domain vfu_A01143 PF17827 PrmC N-terminal domain vfu_A01144 PF04247 Invasion gene expression up-regulator, SirB vfu_A01145 PF13369 Transglutaminase-like superfamily vfu_A01146 PF00793 DAHP synthetase I family vfu_A01148 PF02872 5'-nucleotidase, C-terminal domain vfu_A01148 PF00149 Calcineurin-like phosphoesterase vfu_A01149 PF04073 Aminoacyl-tRNA editing domain vfu_A01150 PF00860 Permease family vfu_A01153 PF03358 NADPH-dependent FMN reductase vfu_A01154 PF03960 ArsC family vfu_A01155 PF13181 Tetratricopeptide repeat vfu_A01155 PF01435 Peptidase family M48 vfu_A01157 PF01594 AI-2E family transporter vfu_A01158 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A01158 PF02743 Cache domain vfu_A01158 PF00672 HAMP domain vfu_A01159 PF00578 AhpC/TSA family vfu_A01160 PF01842 ACT domain vfu_A01161 PF00701 Dihydrodipicolinate synthetase family vfu_A01162 PF06804 NlpB/DapX lipoprotein vfu_A01164 PF02557 D-alanyl-D-alanine carboxypeptidase vfu_A01165 PF01546 Peptidase family M20/M25/M40 vfu_A01165 PF07687 Peptidase dimerisation domain vfu_A01166 PF03960 ArsC family vfu_A01168 PF16363 GDP-mannose 4,6 dehydratase vfu_A01169 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain vfu_A01169 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain vfu_A01170 PF00288 GHMP kinases N terminal domain vfu_A01170 PF10509 Galactokinase galactose-binding signature vfu_A01170 PF08544 GHMP kinases C terminal vfu_A01171 PF00356 Bacterial regulatory proteins, lacI family vfu_A01173 PF00571 CBS domain vfu_A01173 PF00478 IMP dehydrogenase / GMP reductase domain vfu_A01174 PF00474 Sodium:solute symporter family vfu_A01176 PF11143 Protein of unknown function (DUF2919) vfu_A01177 PF04261 Dyp-type peroxidase family vfu_A01178 PF00669 Bacterial flagellin N-terminal helical region vfu_A01178 PF00700 Bacterial flagellin C-terminal helical region vfu_A01178 PF07196 Flagellin hook IN motif vfu_A01180 PF00700 Bacterial flagellin C-terminal helical region vfu_A01180 PF07196 Flagellin hook IN motif vfu_A01180 PF00669 Bacterial flagellin N-terminal helical region vfu_A01181 PF00700 Bacterial flagellin C-terminal helical region vfu_A01181 PF00669 Bacterial flagellin N-terminal helical region vfu_A01181 PF07196 Flagellin hook IN motif vfu_A01182 PF03646 FlaG protein vfu_A01183 PF07196 Flagellin hook IN motif vfu_A01183 PF07195 Flagellar hook-associated protein 2 C-terminus vfu_A01183 PF02465 Flagellar hook-associated protein 2 N-terminus vfu_A01185 PF02561 Flagellar protein FliS vfu_A01186 PF00072 Response regulator receiver domain vfu_A01186 PF00158 Sigma-54 interaction domain vfu_A01186 PF02954 Bacterial regulatory protein, Fis family vfu_A01187 PF00512 His Kinase A (phospho-acceptor) domain vfu_A01187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A01188 PF02954 Bacterial regulatory protein, Fis family vfu_A01188 PF00158 Sigma-54 interaction domain vfu_A01188 PF00072 Response regulator receiver domain vfu_A01189 PF02049 Flagellar hook-basal body complex protein FliE vfu_A01190 PF01514 Secretory protein of YscJ/FliF family vfu_A01190 PF08345 Flagellar M-ring protein C-terminal vfu_A01191 PF14842 FliG N-terminal domain vfu_A01191 PF01706 FliG C-terminal domain vfu_A01191 PF14841 FliG middle domain vfu_A01193 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain vfu_A01193 PF18269 T3SS EscN ATPase C-terminal domain vfu_A01197 PF02154 Flagellar motor switch protein FliM vfu_A01197 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term vfu_A01198 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term vfu_A01199 PF04347 Flagellar biosynthesis protein, FliO vfu_A01200 PF00813 FliP family vfu_A01201 PF01313 Bacterial export proteins, family 3 vfu_A01202 PF01311 Bacterial export proteins, family 1 vfu_A01203 PF01312 FlhB HrpN YscU SpaS Family vfu_A01204 PF01713 Smr domain vfu_A01205 PF05175 Methyltransferase small domain vfu_A01206 PF01264 Chorismate synthase vfu_A01207 PF03458 UPF0126 domain vfu_A01209 PF04315 Elongation factor P hydroxylase vfu_A01210 PF08891 YfcL protein vfu_A01212 PF01266 FAD dependent oxidoreductase vfu_A01212 PF05430 S-adenosyl-L-methionine-dependent methyltransferase vfu_A01213 PF02801 Beta-ketoacyl synthase, C-terminal domain vfu_A01213 PF00109 Beta-ketoacyl synthase, N-terminal domain vfu_A01215 PF11890 Domain of unknown function (DUF3410) vfu_A01215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain vfu_A01215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain vfu_A01216 PF02774 Semialdehyde dehydrogenase, dimerisation domain vfu_A01216 PF01118 Semialdehyde dehydrogenase, NAD binding domain vfu_A01217 PF01475 Ferric uptake regulator family vfu_A01219 PF03466 LysR substrate binding domain vfu_A01219 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A01220 PF03788 LrgA family vfu_A01221 PF04172 LrgB-like family vfu_A01222 PF00258 Flavodoxin vfu_A01224 PF12697 Alpha/beta hydrolase family vfu_A01225 PF03925 SeqA protein C-terminal domain vfu_A01225 PF17206 SeqA protein N-terminal domain vfu_A01226 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I vfu_A01226 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain vfu_A01226 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III vfu_A01226 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II vfu_A01228 PF01784 NIF3 (NGG1p interacting factor 3) vfu_A01229 PF00285 Citrate synthase, C-terminal domain vfu_A01230 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit vfu_A01231 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit vfu_A01232 PF00890 FAD binding domain vfu_A01232 PF02910 Fumarate reductase flavoprotein C-term vfu_A01233 PF13085 2Fe-2S iron-sulfur cluster binding domain vfu_A01234 PF16870 2-oxoglutarate dehydrogenase C-terminal vfu_A01234 PF16078 2-oxoglutarate dehydrogenase N-terminus vfu_A01234 PF02779 Transketolase, pyrimidine binding domain vfu_A01234 PF00676 Dehydrogenase E1 component vfu_A01235 PF00364 Biotin-requiring enzyme vfu_A01235 PF02817 e3 binding domain vfu_A01235 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) vfu_A01236 PF08442 ATP-grasp domain vfu_A01236 PF00549 CoA-ligase vfu_A01237 PF02629 CoA binding domain vfu_A01237 PF00549 CoA-ligase vfu_A01238 PF00950 ABC 3 transport family vfu_A01239 PF00005 ABC transporter vfu_A01240 PF01297 Zinc-uptake complex component A periplasmic vfu_A01241 PF12833 Helix-turn-helix domain vfu_A01242 PF04023 FeoA domain vfu_A01243 PF07664 Ferrous iron transport protein B C terminus vfu_A01243 PF02421 Ferrous iron transport protein B vfu_A01243 PF07670 Nucleoside recognition vfu_A01246 PF05746 DALR anticodon binding domain vfu_A01246 PF03485 Arginyl tRNA synthetase N terminal domain vfu_A01246 PF00750 tRNA synthetases class I (R) vfu_A01247 PF06185 YecM protein vfu_A01248 PF05193 Peptidase M16 inactive domain vfu_A01248 PF00675 Insulinase (Peptidase family M16) vfu_A01248 PF16187 Middle or third domain of peptidase_M16 vfu_A01249 PF00300 Histidine phosphatase superfamily (branch 1) vfu_A01250 PF00771 FHIPEP family vfu_A01251 PF00448 SRP54-type protein, GTPase domain vfu_A01252 PF10609 NUBPL iron-transfer P-loop NTPase vfu_A01253 PF04545 Sigma-70, region 4 vfu_A01253 PF04542 Sigma-70 region 2 vfu_A01253 PF04539 Sigma-70 region 3 vfu_A01254 PF00072 Response regulator receiver domain vfu_A01255 PF04344 Chemotaxis phosphatase, CheZ vfu_A01256 PF01584 CheW-like domain vfu_A01256 PF07194 P2 response regulator binding domain vfu_A01256 PF01627 Hpt domain vfu_A01256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A01256 PF02895 Signal transducing histidine kinase, homodimeric domain vfu_A01257 PF01339 CheB methylesterase vfu_A01257 PF00072 Response regulator receiver domain vfu_A01258 PF13614 AAA domain vfu_A01260 PF01584 CheW-like domain vfu_A01262 PF00005 ABC transporter vfu_A01263 PF03379 CcmB protein vfu_A01264 PF01578 Cytochrome C assembly protein vfu_A01265 PF04995 Heme exporter protein D (CcmD) vfu_A01266 PF03100 CcmE vfu_A01267 PF01578 Cytochrome C assembly protein vfu_A01267 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal vfu_A01268 PF08534 Redoxin vfu_A01269 PF03918 Cytochrome C biogenesis protein vfu_A01270 PF03918 Cytochrome C biogenesis protein vfu_A01271 PF04333 MlaA lipoprotein vfu_A01274 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain vfu_A01274 PF02777 Iron/manganese superoxide dismutases, C-terminal domain vfu_A01275 PF00462 Glutaredoxin vfu_A01276 PF01751 Toprim domain vfu_A01276 PF01131 DNA topoisomerase vfu_A01280 PF00850 Histone deacetylase domain vfu_A01282 PF00155 Aminotransferase class I and II vfu_A01283 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_A01283 PF00529 HlyD membrane-fusion protein of T1SS vfu_A01286 PF07690 Major Facilitator Superfamily vfu_A01287 PF03466 LysR substrate binding domain vfu_A01287 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A01288 PF11893 Domain of unknown function (DUF3413) vfu_A01288 PF00884 Sulfatase vfu_A01289 PF07208 Protein of unknown function (DUF1414) vfu_A01290 PF04245 37-kD nucleoid-associated bacterial protein vfu_A01292 PF03553 Na+/H+ antiporter family vfu_A01293 PF02774 Semialdehyde dehydrogenase, dimerisation domain vfu_A01293 PF01118 Semialdehyde dehydrogenase, NAD binding domain vfu_A01294 PF00520 Ion transport protein vfu_A01294 PF00027 Cyclic nucleotide-binding domain vfu_A01295 PF01914 MarC family integral membrane protein vfu_A01296 PF00465 Iron-containing alcohol dehydrogenase vfu_A01296 PF00171 Aldehyde dehydrogenase family vfu_A01298 PF01740 STAS domain vfu_A01298 PF00916 Sulfate permease family vfu_A01300 PF00575 S1 RNA binding domain vfu_A01300 PF10150 Ribonuclease E/G family vfu_A01300 PF12111 Polyribonucleotide phosphorylase C terminal vfu_A01301 PF01479 S4 domain vfu_A01301 PF00849 RNA pseudouridylate synthase vfu_A01302 PF02545 Maf-like protein vfu_A01303 PF02620 Large ribosomal RNA subunit accumulation protein YceD vfu_A01304 PF01783 Ribosomal L32p protein family vfu_A01305 PF02504 Fatty acid synthesis protein vfu_A01306 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III vfu_A01306 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal vfu_A01307 PF00698 Acyl transferase domain vfu_A01309 PF00550 Phosphopantetheine attachment site vfu_A01310 PF00109 Beta-ketoacyl synthase, N-terminal domain vfu_A01310 PF02801 Beta-ketoacyl synthase, C-terminal domain vfu_A01311 PF01063 Amino-transferase class IV vfu_A01312 PF02618 YceG-like family vfu_A01313 PF02223 Thymidylate kinase vfu_A01314 PF09115 DNA polymerase III, delta subunit, C terminal vfu_A01315 PF01026 TatD related DNase vfu_A01317 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 vfu_A01317 PF00367 phosphotransferase system, EIIB vfu_A01317 PF02378 Phosphotransferase system, EIIC vfu_A01319 PF00367 phosphotransferase system, EIIB vfu_A01319 PF02378 Phosphotransferase system, EIIC vfu_A01321 PF00209 Sodium:neurotransmitter symporter family vfu_A01323 PF01734 Patatin-like phospholipase vfu_A01324 PF02887 Pyruvate kinase, alpha/beta domain vfu_A01324 PF00224 Pyruvate kinase, barrel domain vfu_A01325 PF00480 ROK family vfu_A01326 PF00072 Response regulator receiver domain vfu_A01326 PF01584 CheW-like domain vfu_A01327 PF17657 Bacterial DNA polymerase III alpha subunit finger domain vfu_A01327 PF07733 Bacterial DNA polymerase III alpha NTPase domain vfu_A01327 PF14579 Helix-hairpin-helix motif vfu_A01327 PF02811 PHP domain vfu_A01327 PF01336 OB-fold nucleic acid binding domain vfu_A01330 PF00106 short chain dehydrogenase vfu_A01331 PF08496 Peptidase family S49 N-terminal vfu_A01331 PF01343 Peptidase family S49 vfu_A01335 PF01966 HD domain vfu_A01335 PF13286 Phosphohydrolase-associated domain vfu_A01337 PF00155 Aminotransferase class I and II vfu_A01338 PF00425 chorismate binding enzyme vfu_A01339 PF16582 Middle domain of thiamine pyrophosphate vfu_A01339 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain vfu_A01339 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain vfu_A01340 PF12697 Alpha/beta hydrolase family vfu_A01341 PF00378 Enoyl-CoA hydratase/isomerase vfu_A01342 PF00378 Enoyl-CoA hydratase/isomerase vfu_A01343 PF13378 Enolase C-terminal domain-like vfu_A01344 PF13193 AMP-binding enzyme C-terminal domain vfu_A01344 PF00501 AMP-binding enzyme vfu_A01345 PF03601 Conserved hypothetical protein 698 vfu_A01346 PF07690 Major Facilitator Superfamily vfu_A01350 PF06445 GyrI-like small molecule binding domain vfu_A01351 PF01464 Transglycosylase SLT domain vfu_A01351 PF01476 LysM domain vfu_A01356 PF00460 Flagella basal body rod protein vfu_A01357 PF00460 Flagella basal body rod protein vfu_A01357 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A01358 PF03963 Flagellar hook capping protein - N-terminal region vfu_A01358 PF13860 FlgD Ig-like domain vfu_A01358 PF13861 FlgD Tudor-like domain vfu_A01359 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A01359 PF00460 Flagella basal body rod protein vfu_A01359 PF07559 Flagellar basal body protein FlaE vfu_A01360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A01360 PF00460 Flagella basal body rod protein vfu_A01361 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A01361 PF00460 Flagella basal body rod protein vfu_A01362 PF02107 Flagellar L-ring protein vfu_A01363 PF02119 Flagellar P-ring protein vfu_A01364 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase vfu_A01364 PF10135 Rod binding protein vfu_A01365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A01365 PF00460 Flagella basal body rod protein vfu_A01372 PF04962 KduI/IolB family vfu_A01373 PF03480 Bacterial extracellular solute-binding protein, family 7 vfu_A01375 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component vfu_A01382 PF04170 NlpE N-terminal domain vfu_A01384 PF13677 Membrane MotB of proton-channel complex MotA/MotB vfu_A01384 PF00691 OmpA family vfu_A01385 PF01618 MotA/TolQ/ExbB proton channel family vfu_A01386 PF04545 Sigma-70, region 4 vfu_A01386 PF04542 Sigma-70 region 2 vfu_A01387 PF03748 Flagellar basal body-associated protein FliL vfu_A01390 PF02561 Flagellar protein FliS vfu_A01391 PF02465 Flagellar hook-associated protein 2 N-terminus vfu_A01391 PF07195 Flagellar hook-associated protein 2 C-terminus vfu_A01391 PF07196 Flagellin hook IN motif vfu_A01392 PF00669 Bacterial flagellin N-terminal helical region vfu_A01392 PF00700 Bacterial flagellin C-terminal helical region vfu_A01394 PF00771 FHIPEP family vfu_A01395 PF01312 FlhB HrpN YscU SpaS Family vfu_A01396 PF01311 Bacterial export proteins, family 1 vfu_A01397 PF01313 Bacterial export proteins, family 3 vfu_A01398 PF00813 FliP family vfu_A01399 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term vfu_A01402 PF00691 OmpA family vfu_A01402 PF05736 OprF membrane domain vfu_A01403 PF00072 Response regulator receiver domain vfu_A01403 PF00158 Sigma-54 interaction domain vfu_A01403 PF02954 Bacterial regulatory protein, Fis family vfu_A01404 PF02049 Flagellar hook-basal body complex protein FliE vfu_A01405 PF08345 Flagellar M-ring protein C-terminal vfu_A01405 PF01514 Secretory protein of YscJ/FliF family vfu_A01408 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain vfu_A01408 PF18269 T3SS EscN ATPase C-terminal domain vfu_A01410 PF00291 Pyridoxal-phosphate dependent enzyme vfu_A01411 PF01037 Lrp/AsnC ligand binding domain vfu_A01411 PF13404 AsnC-type helix-turn-helix domain vfu_A01415 PF09619 Type III secretion system lipoprotein chaperone (YscW) vfu_A01416 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain vfu_A01418 PF00563 EAL domain vfu_A01418 PF00990 Diguanylate cyclase, GGDEF domain vfu_A01418 PF08448 PAS fold vfu_A01420 PF07690 Major Facilitator Superfamily vfu_A01421 PF12729 Four helix bundle sensory module for signal transduction vfu_A01421 PF00672 HAMP domain vfu_A01421 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A01422 PF00593 TonB dependent receptor vfu_A01422 PF07715 TonB-dependent Receptor Plug Domain vfu_A01423 PF01497 Periplasmic binding protein vfu_A01425 PF00756 Putative esterase vfu_A01425 PF11806 Domain of unknown function (DUF3327) vfu_A01427 PF00440 Bacterial regulatory proteins, tetR family vfu_A01428 PF01161 Phosphatidylethanolamine-binding protein vfu_A01429 PF12833 Helix-turn-helix domain vfu_A01433 PF00873 AcrB/AcrD/AcrF family vfu_A01434 PF11604 Copper binding periplasmic protein CusF vfu_A01441 PF00271 Helicase conserved C-terminal domain vfu_A01441 PF00270 DEAD/DEAH box helicase vfu_A01442 PF00884 Sulfatase vfu_A01443 PF01219 Prokaryotic diacylglycerol kinase vfu_A01444 PF00884 Sulfatase vfu_A01444 PF08019 Phosphoethanolamine transferase EptA/EptB vfu_A01445 PF00196 Bacterial regulatory proteins, luxR family vfu_A01445 PF00072 Response regulator receiver domain vfu_A01446 PF00512 His Kinase A (phospho-acceptor) domain vfu_A01446 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A01447 PF13247 4Fe-4S dicluster domain vfu_A01448 PF03916 Polysulphide reductase, NrfD vfu_A01449 PF01568 Molydopterin dinucleotide binding domain vfu_A01449 PF04879 Molybdopterin oxidoreductase Fe4S4 domain vfu_A01449 PF00384 Molybdopterin oxidoreductase vfu_A01452 PF03707 Bacterial signalling protein N terminal repeat vfu_A01452 PF00990 Diguanylate cyclase, GGDEF domain vfu_A01452 PF00563 EAL domain vfu_A01453 PF00392 Bacterial regulatory proteins, gntR family vfu_A01453 PF00155 Aminotransferase class I and II vfu_A01454 PF01654 Cytochrome bd terminal oxidase subunit I vfu_A01455 PF02322 Cytochrome bd terminal oxidase subunit II vfu_A01463 PF00999 Sodium/hydrogen exchanger family vfu_A01463 PF02254 TrkA-N domain vfu_A01464 PF02525 Flavodoxin-like fold vfu_A01466 PF07690 Major Facilitator Superfamily vfu_A01467 PF00550 Phosphopantetheine attachment site vfu_A01467 PF00857 Isochorismatase family vfu_A01468 PF13193 AMP-binding enzyme C-terminal domain vfu_A01468 PF00501 AMP-binding enzyme vfu_A01469 PF00425 chorismate binding enzyme vfu_A01471 PF00793 DAHP synthetase I family vfu_A01473 PF00550 Phosphopantetheine attachment site vfu_A01473 PF00668 Condensation domain vfu_A01473 PF08242 Methyltransferase domain vfu_A01473 PF00501 AMP-binding enzyme vfu_A01474 PF13193 AMP-binding enzyme C-terminal domain vfu_A01474 PF00501 AMP-binding enzyme vfu_A01474 PF00550 Phosphopantetheine attachment site vfu_A01474 PF00668 Condensation domain vfu_A01475 PF00296 Luciferase-like monooxygenase vfu_A01477 PF01497 Periplasmic binding protein vfu_A01478 PF01032 FecCD transport family vfu_A01479 PF01032 FecCD transport family vfu_A01480 PF07715 TonB-dependent Receptor Plug Domain vfu_A01482 PF00975 Thioesterase domain vfu_A01482 PF00550 Phosphopantetheine attachment site vfu_A01482 PF00668 Condensation domain vfu_A01482 PF00501 AMP-binding enzyme vfu_A01482 PF13193 AMP-binding enzyme C-terminal domain vfu_A01483 PF00005 ABC transporter vfu_A01485 PF00356 Bacterial regulatory proteins, lacI family vfu_A01486 PF00232 Glycosyl hydrolase family 1 vfu_A01488 PF17954 Quercetinase C-terminal cupin domain vfu_A01488 PF02678 Pirin vfu_A01489 PF02581 Thiamine monophosphate synthase vfu_A01490 PF02110 Hydroxyethylthiazole kinase family vfu_A01491 PF08543 Phosphomethylpyrimidine kinase vfu_A01492 PF00005 ABC transporter vfu_A01492 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vfu_A01493 PF00005 ABC transporter vfu_A01493 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vfu_A01494 PF12911 N-terminal TM domain of oligopeptide transport permease C vfu_A01494 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01495 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01496 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vfu_A01498 PF02321 Outer membrane efflux protein vfu_A01499 PF00529 HlyD membrane-fusion protein of T1SS vfu_A01499 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_A01500 PF07690 Major Facilitator Superfamily vfu_A01501 PF06445 GyrI-like small molecule binding domain vfu_A01501 PF12833 Helix-turn-helix domain vfu_A01502 PF07715 TonB-dependent Receptor Plug Domain vfu_A01502 PF00593 TonB dependent receptor vfu_A01503 PF00072 Response regulator receiver domain vfu_A01503 PF00486 Transcriptional regulatory protein, C terminal vfu_A01504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A01504 PF00512 His Kinase A (phospho-acceptor) domain vfu_A01505 PF02378 Phosphotransferase system, EIIC vfu_A01505 PF00367 phosphotransferase system, EIIB vfu_A01506 PF00356 Bacterial regulatory proteins, lacI family vfu_A01507 PF08244 Glycosyl hydrolases family 32 C terminal vfu_A01507 PF00251 Glycosyl hydrolases family 32 N-terminal domain vfu_A01508 PF11471 Maltoporin periplasmic N-terminal extension vfu_A01508 PF02264 LamB porin vfu_A01509 PF00294 pfkB family carbohydrate kinase vfu_A01512 PF00109 Beta-ketoacyl synthase, N-terminal domain vfu_A01512 PF02801 Beta-ketoacyl synthase, C-terminal domain vfu_A01515 PF00109 Beta-ketoacyl synthase, N-terminal domain vfu_A01515 PF02801 Beta-ketoacyl synthase, C-terminal domain vfu_A01520 PF00221 Aromatic amino acid lyase vfu_A01521 PF00535 Glycosyl transferase family 2 vfu_A01525 PF00550 Phosphopantetheine attachment site vfu_A01526 PF00550 Phosphopantetheine attachment site vfu_A01527 PF01553 Acyltransferase vfu_A01527 PF00501 AMP-binding enzyme vfu_A01527 PF13193 AMP-binding enzyme C-terminal domain vfu_A01532 PF04820 Tryptophan halogenase vfu_A01533 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vfu_A01534 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01535 PF12911 N-terminal TM domain of oligopeptide transport permease C vfu_A01535 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01536 PF00005 ABC transporter vfu_A01536 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vfu_A01537 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vfu_A01537 PF00005 ABC transporter vfu_A01539 PF13409 Glutathione S-transferase, N-terminal domain vfu_A01540 PF13194 Domain of unknown function (DUF4010) vfu_A01541 PF01515 Phosphate acetyl/butaryl transferase vfu_A01541 PF07085 DRTGG domain vfu_A01542 PF00871 Acetokinase family vfu_A01543 PF04217 Protein of unknown function, DUF412 vfu_A01545 PF02653 Branched-chain amino acid transport system / permease component vfu_A01546 PF00005 ABC transporter vfu_A01547 PF05230 MASE2 domain vfu_A01547 PF00990 Diguanylate cyclase, GGDEF domain vfu_A01548 PF01207 Dihydrouridine synthase (Dus) vfu_A01549 PF07963 Prokaryotic N-terminal methylation motif vfu_A01549 PF08334 Type II secretion system (T2SS), protein G vfu_A01550 PF02810 SEC-C motif vfu_A01550 PF07517 SecA DEAD-like domain vfu_A01550 PF01043 SecA preprotein cross-linking domain vfu_A01550 PF07516 SecA Wing and Scaffold domain vfu_A01551 PF03548 Outer membrane lipoprotein carrier protein LolA vfu_A01552 PF00004 ATPase family associated with various cellular activities (AAA) vfu_A01552 PF16193 AAA C-terminal domain vfu_A01552 PF12002 MgsA AAA+ ATPase C terminal vfu_A01553 PF02403 Seryl-tRNA synthetase N-terminal domain vfu_A01553 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) vfu_A01556 PF04324 BFD-like [2Fe-2S] binding domain vfu_A01556 PF04879 Molybdopterin oxidoreductase Fe4S4 domain vfu_A01556 PF00384 Molybdopterin oxidoreductase vfu_A01556 PF01568 Molydopterin dinucleotide binding domain vfu_A01557 PF14824 Sirohaem biosynthesis protein central vfu_A01557 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases vfu_A01557 PF10414 Sirohaem synthase dimerisation region vfu_A01558 PF02885 Glycosyl transferase family, helical bundle domain vfu_A01558 PF00591 Glycosyl transferase family, a/b domain vfu_A01559 PF00072 Response regulator receiver domain vfu_A01559 PF03861 ANTAR domain vfu_A01561 PF00005 ABC transporter vfu_A01562 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01563 PF00005 ABC transporter vfu_A01564 PF04324 BFD-like [2Fe-2S] binding domain vfu_A01564 PF18267 Rubredoxin NAD+ reductase C-terminal domain vfu_A01564 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_A01564 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain vfu_A01564 PF01077 Nitrite and sulphite reductase 4Fe-4S domain vfu_A01564 PF13806 Rieske-like [2Fe-2S] domain vfu_A01566 PF00202 Aminotransferase class-III vfu_A01567 PF06968 Biotin and Thiamin Synthesis associated domain vfu_A01567 PF04055 Radical SAM superfamily vfu_A01568 PF06968 Biotin and Thiamin Synthesis associated domain vfu_A01568 PF04055 Radical SAM superfamily vfu_A01569 PF00155 Aminotransferase class I and II vfu_A01570 PF08241 Methyltransferase domain vfu_A01573 PF01435 Peptidase family M48 vfu_A01576 PF00106 short chain dehydrogenase vfu_A01583 PF00206 Lyase vfu_A01583 PF08328 Adenylosuccinate lyase C-terminal vfu_A01584 PF04356 Protein of unknown function (DUF489) vfu_A01586 PF00294 pfkB family carbohydrate kinase vfu_A01587 PF00816 H-NS histone family vfu_A01588 PF03553 Na+/H+ antiporter family vfu_A01589 PF02954 Bacterial regulatory protein, Fis family vfu_A01589 PF00072 Response regulator receiver domain vfu_A01589 PF00158 Sigma-54 interaction domain vfu_A01591 PF01634 ATP phosphoribosyltransferase vfu_A01591 PF08029 HisG, C-terminal domain vfu_A01592 PF00815 Histidinol dehydrogenase vfu_A01593 PF00155 Aminotransferase class I and II vfu_A01594 PF08645 Polynucleotide kinase 3 phosphatase vfu_A01594 PF00475 Imidazoleglycerol-phosphate dehydratase vfu_A01595 PF00117 Glutamine amidotransferase class-I vfu_A01596 PF00977 Histidine biosynthesis protein vfu_A01597 PF00977 Histidine biosynthesis protein vfu_A01598 PF01502 Phosphoribosyl-AMP cyclohydrolase vfu_A01598 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase vfu_A01599 PF00849 RNA pseudouridylate synthase vfu_A01600 PF03971 Monomeric isocitrate dehydrogenase vfu_A01601 PF03551 Transcriptional regulator PadR-like family vfu_A01601 PF10400 Virulence activator alpha C-term vfu_A01602 PF07690 Major Facilitator Superfamily vfu_A01603 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_A01603 PF00724 NADH:flavin oxidoreductase / NADH oxidase family vfu_A01604 PF00313 'Cold-shock' DNA-binding domain vfu_A01605 PF02617 ATP-dependent Clp protease adaptor protein ClpS vfu_A01606 PF17871 AAA lid domain vfu_A01606 PF10431 C-terminal, D2-small domain, of ClpB protein vfu_A01606 PF07724 AAA domain (Cdc48 subfamily) vfu_A01606 PF02861 Clp amino terminal domain, pathogenicity island component vfu_A01606 PF00004 ATPase family associated with various cellular activities (AAA) vfu_A01607 PF01176 Translation initiation factor 1A / IF-1 vfu_A01608 PF04376 Arginine-tRNA-protein transferase, N terminus vfu_A01608 PF04377 Arginine-tRNA-protein transferase, C terminus vfu_A01609 PF03588 Leucyl/phenylalanyl-tRNA protein transferase vfu_A01611 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) vfu_A01612 PF10692 Protein of unknown function (DUF2498) vfu_A01613 PF08272 Topoisomerase I zinc-ribbon-like vfu_A01613 PF01131 DNA topoisomerase vfu_A01613 PF01751 Toprim domain vfu_A01613 PF01396 Topoisomerase DNA binding C4 zinc finger vfu_A01614 PF00990 Diguanylate cyclase, GGDEF domain vfu_A01614 PF00072 Response regulator receiver domain vfu_A01616 PF00483 Nucleotidyl transferase vfu_A01617 PF08323 Starch synthase catalytic domain vfu_A01617 PF00534 Glycosyl transferases group 1 vfu_A01621 PF04994 TfoX C-terminal domain vfu_A01621 PF04993 TfoX N-terminal domain vfu_A01622 PF00356 Bacterial regulatory proteins, lacI family vfu_A01623 PF02613 Nitrate reductase delta subunit vfu_A01624 PF00072 Response regulator receiver domain vfu_A01624 PF00486 Transcriptional regulatory protein, C terminal vfu_A01625 PF02698 DUF218 domain vfu_A01627 PF03882 MukF winged-helix domain vfu_A01627 PF17192 MukF middle domain vfu_A01627 PF17193 MukF C-terminal domain vfu_A01628 PF04288 MukE-like family vfu_A01629 PF04310 MukB N-terminal vfu_A01629 PF16330 MukB hinge domain vfu_A01633 PF08443 RimK-like ATP-grasp domain vfu_A01633 PF18030 RimK PreATP-grasp domain vfu_A01634 PF08003 Protein of unknown function (DUF1698) vfu_A01635 PF13649 Methyltransferase domain vfu_A01636 PF01904 Protein of unknown function DUF72 vfu_A01637 PF02938 GAD domain vfu_A01637 PF00152 tRNA synthetases class II (D, K and N) vfu_A01637 PF01336 OB-fold nucleic acid binding domain vfu_A01638 PF00265 Thymidine kinase vfu_A01639 PF02698 DUF218 domain vfu_A01640 PF01370 NAD dependent epimerase/dehydratase family vfu_A01641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A01641 PF03466 LysR substrate binding domain vfu_A01644 PF01226 Formate/nitrite transporter vfu_A01645 PF03649 Uncharacterised protein family (UPF0014) vfu_A01646 PF06796 Periplasmic nitrate reductase protein NapE vfu_A01647 PF03264 NapC/NirT cytochrome c family, N-terminal region vfu_A01648 PF01568 Molydopterin dinucleotide binding domain vfu_A01648 PF18364 Molybdopterin oxidoreductase N-terminal domain vfu_A01648 PF00384 Molybdopterin oxidoreductase vfu_A01650 PF16875 Glycosyl hydrolase family 36 N-terminal domain vfu_A01650 PF16874 Glycosyl hydrolase family 36 C-terminal domain vfu_A01652 PF01368 DHH family vfu_A01652 PF02833 DHHA2 domain vfu_A01655 PF00005 ABC transporter vfu_A01656 PF00005 ABC transporter vfu_A01656 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vfu_A01657 PF12911 N-terminal TM domain of oligopeptide transport permease C vfu_A01657 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01658 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01659 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vfu_A01660 PF02954 Bacterial regulatory protein, Fis family vfu_A01660 PF00158 Sigma-54 interaction domain vfu_A01661 PF04012 PspA/IM30 family vfu_A01662 PF06667 Phage shock protein B vfu_A01664 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_A01665 PF13533 Biotin-lipoyl like vfu_A01666 PF00873 AcrB/AcrD/AcrF family vfu_A01667 PF03352 Methyladenine glycosylase vfu_A01668 PF01053 Cys/Met metabolism PLP-dependent enzyme vfu_A01669 PF13396 Phospholipase_D-nuclease N-terminal vfu_A01669 PF13091 PLD-like domain vfu_A01670 PF00209 Sodium:neurotransmitter symporter family vfu_A01671 PF10415 Fumarase C C-terminus vfu_A01671 PF00206 Lyase vfu_A01672 PF00849 RNA pseudouridylate synthase vfu_A01674 PF00701 Dihydrodipicolinate synthetase family vfu_A01675 PF01066 CDP-alcohol phosphatidyltransferase vfu_A01676 PF00005 ABC transporter vfu_A01677 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01678 PF13416 Bacterial extracellular solute-binding protein vfu_A01680 PF06945 Protein of unknown function (DUF1289) vfu_A01683 PF00005 ABC transporter vfu_A01685 PF03222 Tryptophan/tyrosine permease family vfu_A01687 PF01717 Cobalamin-independent synthase, Catalytic domain vfu_A01690 PF00313 'Cold-shock' DNA-binding domain vfu_A01696 PF01380 SIS domain vfu_A01696 PF01418 Helix-turn-helix domain, rpiR family vfu_A01700 PF03606 C4-dicarboxylate anaerobic carrier vfu_A01701 PF10397 Adenylosuccinate lyase C-terminus vfu_A01701 PF00206 Lyase vfu_A01702 PF00390 Malic enzyme, N-terminal domain vfu_A01702 PF03949 Malic enzyme, NAD binding domain vfu_A01703 PF00583 Acetyltransferase (GNAT) family vfu_A01706 PF01386 Ribosomal L25p family vfu_A01708 PF00672 HAMP domain vfu_A01708 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A01708 PF00512 His Kinase A (phospho-acceptor) domain vfu_A01709 PF00072 Response regulator receiver domain vfu_A01709 PF00486 Transcriptional regulatory protein, C terminal vfu_A01711 PF04851 Type III restriction enzyme, res subunit vfu_A01711 PF00271 Helicase conserved C-terminal domain vfu_A01712 PF01479 S4 domain vfu_A01712 PF00849 RNA pseudouridylate synthase vfu_A01713 PF07690 Major Facilitator Superfamily vfu_A01715 PF11066 Protein of unknown function (DUF2867) vfu_A01715 PF13460 NAD(P)H-binding vfu_A01716 PF01554 MatE vfu_A01717 PF00005 ABC transporter vfu_A01720 PF06965 Na+/H+ antiporter 1 vfu_A01721 PF05736 OprF membrane domain vfu_A01721 PF00691 OmpA family vfu_A01722 PF02321 Outer membrane efflux protein vfu_A01724 PF00202 Aminotransferase class-III vfu_A01725 PF03435 Saccharopine dehydrogenase NADP binding domain vfu_A01725 PF16653 Saccharopine dehydrogenase C-terminal domain vfu_A01727 PF02743 Cache domain vfu_A01727 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A01727 PF00672 HAMP domain vfu_A01729 PF03480 Bacterial extracellular solute-binding protein, family 7 vfu_A01731 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component vfu_A01732 PF01202 Shikimate kinase vfu_A01733 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain vfu_A01733 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase vfu_A01735 PF00994 Probable molybdopterin binding domain vfu_A01737 PF00970 Oxidoreductase FAD-binding domain vfu_A01737 PF00175 Oxidoreductase NAD-binding domain vfu_A01737 PF00111 2Fe-2S iron-sulfur cluster binding domain vfu_A01738 PF00268 Ribonucleotide reductase, small chain vfu_A01739 PF00317 Ribonucleotide reductase, all-alpha domain vfu_A01739 PF03477 ATP cone domain vfu_A01739 PF02867 Ribonucleotide reductase, barrel domain vfu_A01742 PF00521 DNA gyrase/topoisomerase IV, subunit A vfu_A01742 PF03989 DNA gyrase C-terminal domain, beta-propeller vfu_A01744 PF00925 GTP cyclohydrolase II vfu_A01749 PF01471 Putative peptidoglycan binding domain vfu_A01749 PF03734 L,D-transpeptidase catalytic domain vfu_A01750 PF05951 Bacterial protein of unknown function (DUF882) vfu_A01751 PF00753 Metallo-beta-lactamase superfamily vfu_A01755 PF03480 Bacterial extracellular solute-binding protein, family 7 vfu_A01757 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component vfu_A01758 PF17200 Single Cache domain 2 vfu_A01758 PF07730 Histidine kinase vfu_A01759 PF00196 Bacterial regulatory proteins, luxR family vfu_A01759 PF00072 Response regulator receiver domain vfu_A01760 PF01047 MarR family vfu_A01761 PF02028 BCCT, betaine/carnitine/choline family transporter vfu_A01762 PF00672 HAMP domain vfu_A01762 PF17200 Single Cache domain 2 vfu_A01762 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A01763 PF17657 Bacterial DNA polymerase III alpha subunit finger domain vfu_A01763 PF14579 Helix-hairpin-helix motif vfu_A01763 PF00929 Exonuclease vfu_A01763 PF02811 PHP domain vfu_A01763 PF07733 Bacterial DNA polymerase III alpha NTPase domain vfu_A01766 PF00155 Aminotransferase class I and II vfu_A01769 PF00152 tRNA synthetases class II (D, K and N) vfu_A01769 PF01336 OB-fold nucleic acid binding domain vfu_A01770 PF00672 HAMP domain vfu_A01770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A01771 PF01242 6-pyruvoyl tetrahydropterin synthase vfu_A01772 PF00561 alpha/beta hydrolase fold vfu_A01774 PF02321 Outer membrane efflux protein vfu_A01775 PF12704 MacB-like periplasmic core domain vfu_A01775 PF02687 FtsX-like permease family vfu_A01775 PF00005 ABC transporter vfu_A01776 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_A01777 PF03315 Serine dehydratase beta chain vfu_A01777 PF03313 Serine dehydratase alpha chain vfu_A01778 PF03222 Tryptophan/tyrosine permease family vfu_A01779 PF00293 NUDIX domain vfu_A01781 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A01781 PF00072 Response regulator receiver domain vfu_A01781 PF00512 His Kinase A (phospho-acceptor) domain vfu_A01781 PF09308 LuxQ, periplasmic vfu_A01782 PF04715 Anthranilate synthase component I, N terminal region vfu_A01782 PF00425 chorismate binding enzyme vfu_A01785 PF04317 YcjX-like family, DUF463 vfu_A01786 PF05128 Domain of unknown function (DUF697) vfu_A01787 PF00158 Sigma-54 interaction domain vfu_A01787 PF18024 Helix-turn-helix domain vfu_A01788 PF13302 Acetyltransferase (GNAT) domain vfu_A01791 PF00892 EamA-like transporter family vfu_A01793 PF00939 Sodium:sulfate symporter transmembrane region vfu_A01794 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A01794 PF00497 Bacterial extracellular solute-binding proteins, family 3 vfu_A01794 PF00512 His Kinase A (phospho-acceptor) domain vfu_A01795 PF00158 Sigma-54 interaction domain vfu_A01795 PF00072 Response regulator receiver domain vfu_A01795 PF02954 Bacterial regulatory protein, Fis family vfu_A01796 PF03466 LysR substrate binding domain vfu_A01796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A01797 PF03992 Antibiotic biosynthesis monooxygenase vfu_A01798 PF00881 Nitroreductase family vfu_A01799 PF04400 (Na+)-NQR maturation NqrM vfu_A01802 PF02929 Beta galactosidase small chain vfu_A01802 PF02836 Glycosyl hydrolases family 2, TIM barrel domain vfu_A01802 PF16353 Domain of unknown function(DUF4981) vfu_A01802 PF02837 Glycosyl hydrolases family 2, sugar binding domain vfu_A01802 PF00703 Glycosyl hydrolases family 2 vfu_A01803 PF13407 Periplasmic binding protein domain vfu_A01804 PF00005 ABC transporter vfu_A01805 PF02653 Branched-chain amino acid transport system / permease component vfu_A01807 PF01970 Tripartite tricarboxylate transporter TctA family vfu_A01812 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain vfu_A01812 PF02805 Metal binding domain of Ada vfu_A01812 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain vfu_A01812 PF12833 Helix-turn-helix domain vfu_A01815 PF00285 Citrate synthase, C-terminal domain vfu_A01816 PF00694 Aconitase C-terminal domain vfu_A01816 PF00330 Aconitase family (aconitate hydratase) vfu_A01817 PF04303 PrpF protein vfu_A01818 PF16177 Acetyl-coenzyme A synthetase N-terminus vfu_A01818 PF13193 AMP-binding enzyme C-terminal domain vfu_A01818 PF00501 AMP-binding enzyme vfu_A01820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_A01820 PF00529 HlyD membrane-fusion protein of T1SS vfu_A01821 PF07690 Major Facilitator Superfamily vfu_A01824 PF13193 AMP-binding enzyme C-terminal domain vfu_A01824 PF00550 Phosphopantetheine attachment site vfu_A01824 PF00668 Condensation domain vfu_A01824 PF00501 AMP-binding enzyme vfu_A01825 PF07687 Peptidase dimerisation domain vfu_A01825 PF01546 Peptidase family M20/M25/M40 vfu_A01826 PF00563 EAL domain vfu_A01826 PF12792 CSS motif domain associated with EAL vfu_A01827 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily vfu_A01828 PF04209 homogentisate 1,2-dioxygenase vfu_A01830 PF14497 Glutathione S-transferase, C-terminal domain vfu_A01830 PF02798 Glutathione S-transferase, N-terminal domain vfu_A01834 PF04074 YhcH/YjgK/YiaL vfu_A01836 PF00455 DeoR C terminal sensor domain vfu_A01836 PF08220 DeoR-like helix-turn-helix domain vfu_A01837 PF00005 ABC transporter vfu_A01837 PF17912 MalK OB fold domain vfu_A01838 PF00005 ABC transporter vfu_A01838 PF17912 MalK OB fold domain vfu_A01839 PF00005 ABC transporter vfu_A01839 PF17912 MalK OB fold domain vfu_A01840 PF17912 MalK OB fold domain vfu_A01840 PF00005 ABC transporter vfu_A01841 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01842 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01843 PF13416 Bacterial extracellular solute-binding protein vfu_A01848 PF01618 MotA/TolQ/ExbB proton channel family vfu_A01849 PF01618 MotA/TolQ/ExbB proton channel family vfu_A01850 PF02472 Biopolymer transport protein ExbD/TolR vfu_A01851 PF03544 Gram-negative bacterial TonB protein C-terminal vfu_A01854 PF01734 Patatin-like phospholipase vfu_A01855 PF14743 DNA ligase OB-like domain vfu_A01855 PF01068 ATP dependent DNA ligase domain vfu_A01857 PF01554 MatE vfu_A01858 PF00677 Lumazine binding domain vfu_A01862 PF00877 NlpC/P60 family vfu_A01863 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A01863 PF00672 HAMP domain vfu_A01863 PF02743 Cache domain vfu_A01866 PF00480 ROK family vfu_A01868 PF00994 Probable molybdopterin binding domain vfu_A01868 PF03454 MoeA C-terminal region (domain IV) vfu_A01868 PF03453 MoeA N-terminal region (domain I and II) vfu_A01869 PF12804 MobA-like NTP transferase domain vfu_A01870 PF00005 ABC transporter vfu_A01870 PF08402 TOBE domain vfu_A01871 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01872 PF12849 PBP superfamily domain vfu_A01874 PF02954 Bacterial regulatory protein, Fis family vfu_A01874 PF00072 Response regulator receiver domain vfu_A01874 PF00158 Sigma-54 interaction domain vfu_A01875 PF00512 His Kinase A (phospho-acceptor) domain vfu_A01875 PF00989 PAS fold vfu_A01875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A01878 PF02634 FdhD/NarQ family vfu_A01882 PF02613 Nitrate reductase delta subunit vfu_A01884 PF00384 Molybdopterin oxidoreductase vfu_A01884 PF04879 Molybdopterin oxidoreductase Fe4S4 domain vfu_A01884 PF01568 Molydopterin dinucleotide binding domain vfu_A01885 PF13247 4Fe-4S dicluster domain vfu_A01888 PF00909 Ammonium Transporter Family vfu_A01889 PF02146 Sir2 family vfu_A01890 PF13416 Bacterial extracellular solute-binding protein vfu_A01891 PF13416 Bacterial extracellular solute-binding protein vfu_A01892 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01893 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A01894 PF08402 TOBE domain vfu_A01894 PF00005 ABC transporter vfu_A01898 PF01171 PP-loop family vfu_A01899 PF00582 Universal stress protein family vfu_A01900 PF00027 Cyclic nucleotide-binding domain vfu_A01900 PF13545 Crp-like helix-turn-helix domain vfu_A01903 PF00403 Heavy-metal-associated domain vfu_A01905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III vfu_A01905 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP vfu_A01908 PF00115 Cytochrome C and Quinol oxidase polypeptide I vfu_A01911 PF09308 LuxQ, periplasmic vfu_A01911 PF00512 His Kinase A (phospho-acceptor) domain vfu_A01911 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A01911 PF00072 Response regulator receiver domain vfu_A01912 PF01566 Natural resistance-associated macrophage protein vfu_A01920 PF06303 MatP N-terminal domain vfu_A01920 PF17414 MatP C-terminal ribbon-helix-helix domain vfu_A01922 PF13654 AAA domain vfu_A01922 PF05362 Lon protease (S16) C-terminal proteolytic domain vfu_A01923 PF07977 FabA-like domain vfu_A01925 PF00005 ABC transporter vfu_A01925 PF12848 ABC transporter vfu_A01925 PF16326 ABC transporter C-terminal domain vfu_A01927 PF10672 S-adenosylmethionine-dependent methyltransferase vfu_A01927 PF01170 Putative RNA methylase family UPF0020 vfu_A01927 PF02926 THUMP domain vfu_A01929 PF07126 Cell-division protein ZapC vfu_A01930 PF01180 Dihydroorotate dehydrogenase vfu_A01931 PF05088 Bacterial NAD-glutamate dehydrogenase vfu_A01932 PF11940 Domain of unknown function (DUF3458) Ig-like fold vfu_A01932 PF17432 Domain of unknown function (DUF3458_C) ARM repeats vfu_A01932 PF01433 Peptidase family M1 domain vfu_A01933 PF11940 Domain of unknown function (DUF3458) Ig-like fold vfu_A01933 PF01433 Peptidase family M1 domain vfu_A01933 PF17432 Domain of unknown function (DUF3458_C) ARM repeats vfu_A01936 PF00595 PDZ domain vfu_A01936 PF03572 Peptidase family S41 vfu_A01936 PF17804 Tail specific protease N-terminal domain vfu_A01936 PF11818 C-terminal domain of tail specific protease (DUF3340) vfu_A01937 PF17516 ProQ C-terminal domain vfu_A01937 PF04352 ProQ/FINO family vfu_A01938 PF13185 GAF domain vfu_A01939 PF00005 ABC transporter vfu_A01939 PF00664 ABC transporter transmembrane region vfu_A01940 PF04403 Paraquat-inducible protein A vfu_A01941 PF02470 MlaD protein vfu_A01942 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF vfu_A01942 PF01189 16S rRNA methyltransferase RsmB/F vfu_A01942 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF vfu_A01943 PF17783 CvfB-like winged helix domain vfu_A01943 PF13509 S1 domain vfu_A01946 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain vfu_A01946 PF02896 PEP-utilising enzyme, TIM barrel domain vfu_A01946 PF00391 PEP-utilising enzyme, mobile domain vfu_A01947 PF00793 DAHP synthetase I family vfu_A01948 PF04461 Protein of unknown function (DUF520) vfu_A01949 PF01641 SelR domain vfu_A01952 PF01235 Sodium:alanine symporter family vfu_A01957 PF16671 Actin cross-linking domain vfu_A01957 PF04717 Type VI secretion system, phage-baseplate injector vfu_A01958 PF05638 Type VI secretion system effector, Hcp vfu_A01959 PF02074 Carboxypeptidase Taq (M32) metallopeptidase vfu_A01963 PF01614 Bacterial transcriptional regulator vfu_A01963 PF09339 IclR helix-turn-helix domain vfu_A01964 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A01964 PF03466 LysR substrate binding domain vfu_A01965 PF00848 Ring hydroxylating alpha subunit (catalytic domain) vfu_A01965 PF00355 Rieske [2Fe-2S] domain vfu_A01966 PF00866 Ring hydroxylating beta subunit vfu_A01967 PF00355 Rieske [2Fe-2S] domain vfu_A01968 PF00106 short chain dehydrogenase vfu_A01969 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_A01969 PF14759 Reductase C-terminal vfu_A01970 PF00083 Sugar (and other) transporter vfu_A01971 PF00682 HMGL-like vfu_A01971 PF07836 DmpG-like communication domain vfu_A01972 PF01118 Semialdehyde dehydrogenase, NAD binding domain vfu_A01972 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation vfu_A01973 PF01557 Fumarylacetoacetate (FAA) hydrolase family vfu_A01974 PF12697 Alpha/beta hydrolase family vfu_A01975 PF12697 Alpha/beta hydrolase family vfu_A01976 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase vfu_A01977 PF01494 FAD binding domain vfu_A01979 PF00271 Helicase conserved C-terminal domain vfu_A01979 PF04408 Helicase associated domain (HA2) vfu_A01979 PF11898 Domain of unknown function (DUF3418) vfu_A01979 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold vfu_A01979 PF00270 DEAD/DEAH box helicase vfu_A01980 PF02525 Flavodoxin-like fold vfu_A01986 PF00990 Diguanylate cyclase, GGDEF domain vfu_A01988 PF00012 Hsp70 protein vfu_A01989 PF00012 Hsp70 protein vfu_A01990 PF00990 Diguanylate cyclase, GGDEF domain vfu_A01990 PF05230 MASE2 domain vfu_A01992 PF03707 Bacterial signalling protein N terminal repeat vfu_A01992 PF00990 Diguanylate cyclase, GGDEF domain vfu_A01992 PF00563 EAL domain vfu_A01996 PF04399 Glutaredoxin 2, C terminal domain vfu_A01996 PF13417 Glutathione S-transferase, N-terminal domain vfu_A01998 PF07859 alpha/beta hydrolase fold vfu_A02000 PF01568 Molydopterin dinucleotide binding domain vfu_A02000 PF18364 Molybdopterin oxidoreductase N-terminal domain vfu_A02000 PF00384 Molybdopterin oxidoreductase vfu_A02001 PF03264 NapC/NirT cytochrome c family, N-terminal region vfu_A02002 PF06508 Queuosine biosynthesis protein QueC vfu_A02003 PF04055 Radical SAM superfamily vfu_A02005 PF14824 Sirohaem biosynthesis protein central vfu_A02005 PF10414 Sirohaem synthase dimerisation region vfu_A02005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases vfu_A02006 PF00497 Bacterial extracellular solute-binding proteins, family 3 vfu_A02007 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A02008 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A02009 PF00005 ABC transporter vfu_A02010 PF01027 Inhibitor of apoptosis-promoting Bax1 vfu_A02011 PF04358 DsrC like protein vfu_A02012 PF00708 Acylphosphatase vfu_A02014 PF17785 PUA-like domain vfu_A02014 PF10672 S-adenosylmethionine-dependent methyltransferase vfu_A02015 PF06433 Methylamine dehydrogenase heavy chain (MADH) vfu_A02017 PF00578 AhpC/TSA family vfu_A02018 PF02975 Methylamine dehydrogenase, L chain vfu_A02021 PF00141 Peroxidase vfu_A02023 PF00512 His Kinase A (phospho-acceptor) domain vfu_A02023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A02023 PF00672 HAMP domain vfu_A02024 PF00486 Transcriptional regulatory protein, C terminal vfu_A02024 PF00072 Response regulator receiver domain vfu_A02026 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain vfu_A02026 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain vfu_A02030 PF00924 Mechanosensitive ion channel vfu_A02030 PF05552 Conserved TM helix vfu_A02031 PF01699 Sodium/calcium exchanger protein vfu_A02034 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A02034 PF08447 PAS fold vfu_A02034 PF13426 PAS domain vfu_A02037 PF00990 Diguanylate cyclase, GGDEF domain vfu_A02037 PF00072 Response regulator receiver domain vfu_A02039 PF02769 AIR synthase related protein, C-terminal domain vfu_A02039 PF00586 AIR synthase related protein, N-terminal domain vfu_A02040 PF00581 Rhodanese-like domain vfu_A02041 PF02635 DsrE/DsrF-like family vfu_A02042 PF02492 CobW/HypB/UreG, nucleotide-binding domain vfu_A02044 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA vfu_A02045 PF00586 AIR synthase related protein, N-terminal domain vfu_A02045 PF02769 AIR synthase related protein, C-terminal domain vfu_A02046 PF01924 Hydrogenase formation hypA family vfu_A02047 PF01455 HupF/HypC family vfu_A02048 PF07503 HypF finger vfu_A02048 PF17788 HypF Kae1-like domain vfu_A02048 PF00708 Acylphosphatase vfu_A02048 PF01300 Telomere recombination vfu_A02049 PF04955 HupE / UreJ protein vfu_A02050 PF02634 FdhD/NarQ family vfu_A02051 PF00158 Sigma-54 interaction domain vfu_A02051 PF01590 GAF domain vfu_A02052 PF00384 Molybdopterin oxidoreductase vfu_A02052 PF04879 Molybdopterin oxidoreductase Fe4S4 domain vfu_A02052 PF01568 Molydopterin dinucleotide binding domain vfu_A02053 PF01568 Molydopterin dinucleotide binding domain vfu_A02053 PF00384 Molybdopterin oxidoreductase vfu_A02053 PF04879 Molybdopterin oxidoreductase Fe4S4 domain vfu_A02054 PF13247 4Fe-4S dicluster domain vfu_A02054 PF12800 4Fe-4S binding domain vfu_A02055 PF01750 Hydrogenase maturation protease vfu_A02056 PF07450 Formate hydrogenlyase maturation protein HycH vfu_A02057 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit vfu_A02058 PF12838 4Fe-4S dicluster domain vfu_A02059 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit vfu_A02059 PF00374 Nickel-dependent hydrogenase vfu_A02059 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit vfu_A02060 PF00146 NADH dehydrogenase vfu_A02061 PF00361 Proton-conducting membrane transporter vfu_A02062 PF00037 4Fe-4S binding domain vfu_A02062 PF12798 4Fe-4S binding domain vfu_A02063 PF09107 Elongation factor SelB, winged helix vfu_A02063 PF00009 Elongation factor Tu GTP binding domain vfu_A02063 PF09106 Elongation factor SelB, winged helix vfu_A02063 PF03144 Elongation factor Tu domain 2 vfu_A02063 PF09105 Elongation factor SelB, winged helix vfu_A02064 PF12390 Selenocysteine synthase N terminal vfu_A02064 PF03841 L-seryl-tRNA selenium transferase vfu_A02065 PF01584 CheW-like domain vfu_A02065 PF00072 Response regulator receiver domain vfu_A02067 PF12431 Transcriptional regulator vfu_A02067 PF00072 Response regulator receiver domain vfu_A02068 PF00989 PAS fold vfu_A02068 PF17203 Single cache domain 3 vfu_A02068 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain vfu_A02068 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A02071 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_A02075 PF04204 Homoserine O-succinyltransferase vfu_A02078 PF05971 RNA methyltransferase vfu_A02079 PF01863 Protein of unknown function DUF45 vfu_A02081 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02081 PF03466 LysR substrate binding domain vfu_A02086 PF12464 Maltose acetyltransferase vfu_A02086 PF00132 Bacterial transferase hexapeptide (six repeats) vfu_A02087 PF17200 Single Cache domain 2 vfu_A02087 PF00672 HAMP domain vfu_A02087 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A02088 PF02264 LamB porin vfu_A02089 PF02449 Beta-galactosidase vfu_A02089 PF08533 Beta-galactosidase C-terminal domain vfu_A02089 PF08532 Beta-galactosidase trimerisation domain vfu_A02090 PF07745 Glycosyl hydrolase family 53 vfu_A02091 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A02092 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A02093 PF13416 Bacterial extracellular solute-binding protein vfu_A02094 PF00005 ABC transporter vfu_A02094 PF17912 MalK OB fold domain vfu_A02095 PF00356 Bacterial regulatory proteins, lacI family vfu_A02105 PF00005 ABC transporter vfu_A02106 PF01032 FecCD transport family vfu_A02107 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family vfu_A02109 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase vfu_A02110 PF02654 Cobalamin-5-phosphate synthase vfu_A02111 PF02277 Phosphoribosyltransferase vfu_A02112 PF01613 Flavin reductase like domain vfu_A02120 PF08411 Exonuclease C-terminal vfu_A02120 PF00929 Exonuclease vfu_A02122 PF03788 LrgA family vfu_A02123 PF04172 LrgB-like family vfu_A02124 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region vfu_A02124 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region vfu_A02125 PF08447 PAS fold vfu_A02125 PF00563 EAL domain vfu_A02125 PF00990 Diguanylate cyclase, GGDEF domain vfu_A02125 PF08448 PAS fold vfu_A02130 PF02222 ATP-grasp domain vfu_A02131 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A02131 PF08447 PAS fold vfu_A02131 PF13426 PAS domain vfu_A02132 PF05724 Thiopurine S-methyltransferase (TPMT) vfu_A02134 PF00216 Bacterial DNA-binding protein vfu_A02136 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain vfu_A02136 PF01588 Putative tRNA binding domain vfu_A02136 PF03147 Ferredoxin-fold anticodon binding domain vfu_A02136 PF03484 tRNA synthetase B5 domain vfu_A02136 PF03483 B3/4 domain vfu_A02137 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain vfu_A02137 PF01409 tRNA synthetases class II core domain (F) vfu_A02139 PF00990 Diguanylate cyclase, GGDEF domain vfu_A02139 PF00072 Response regulator receiver domain vfu_A02140 PF07995 Glucose / Sorbosone dehydrogenase vfu_A02141 PF01066 CDP-alcohol phosphatidyltransferase vfu_A02142 PF08459 UvrC Helix-hairpin-helix N-terminal vfu_A02142 PF02151 UvrB/uvrC motif vfu_A02142 PF01541 GIY-YIG catalytic domain vfu_A02143 PF00072 Response regulator receiver domain vfu_A02143 PF00196 Bacterial regulatory proteins, luxR family vfu_A02145 PF03104 DNA polymerase family B, exonuclease domain vfu_A02145 PF00136 DNA polymerase family B vfu_A02147 PF08207 Elongation factor P (EF-P) KOW-like domain vfu_A02147 PF09285 Elongation factor P, C-terminal vfu_A02147 PF01132 Elongation factor P (EF-P) OB domain vfu_A02148 PF04269 Protein of unknown function, DUF440 vfu_A02151 PF07702 UTRA domain vfu_A02151 PF00392 Bacterial regulatory proteins, gntR family vfu_A02152 PF01979 Amidohydrolase family vfu_A02153 PF00491 Arginase family vfu_A02154 PF17392 Urocanase C-terminal domain vfu_A02154 PF17391 Urocanase N-terminal domain vfu_A02154 PF01175 Urocanase Rossmann-like domain vfu_A02155 PF00221 Aromatic amino acid lyase vfu_A02158 PF04191 Phospholipid methyltransferase vfu_A02159 PF01565 FAD binding domain vfu_A02159 PF13183 4Fe-4S dicluster domain vfu_A02159 PF02913 FAD linked oxidases, C-terminal domain vfu_A02163 PF13488 Glycine zipper vfu_A02163 PF00691 OmpA family vfu_A02167 PF01259 SAICAR synthetase vfu_A02168 PF00202 Aminotransferase class-III vfu_A02169 PF00171 Aldehyde dehydrogenase family vfu_A02170 PF04371 Porphyromonas-type peptidyl-arginine deiminase vfu_A02171 PF00795 Carbon-nitrogen hydrolase vfu_A02172 PF01266 FAD dependent oxidoreductase vfu_A02173 PF00171 Aldehyde dehydrogenase family vfu_A02174 PF01381 Helix-turn-helix vfu_A02174 PF07883 Cupin domain vfu_A02175 PF07722 Peptidase C26 vfu_A02176 PF00120 Glutamine synthetase, catalytic domain vfu_A02177 PF03553 Na+/H+ antiporter family vfu_A02178 PF13533 Biotin-lipoyl like vfu_A02179 PF07690 Major Facilitator Superfamily vfu_A02180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02180 PF03466 LysR substrate binding domain vfu_A02183 PF08482 ATP-dependent helicase C-terminal vfu_A02183 PF00271 Helicase conserved C-terminal domain vfu_A02183 PF04408 Helicase associated domain (HA2) vfu_A02183 PF00270 DEAD/DEAH box helicase vfu_A02184 PF00390 Malic enzyme, N-terminal domain vfu_A02184 PF03949 Malic enzyme, NAD binding domain vfu_A02186 PF03466 LysR substrate binding domain vfu_A02186 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02191 PF09278 MerR, DNA binding vfu_A02191 PF00376 MerR family regulatory protein vfu_A02193 PF02698 DUF218 domain vfu_A02195 PF00266 Aminotransferase class-V vfu_A02200 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_A02201 PF00005 ABC transporter vfu_A02201 PF00664 ABC transporter transmembrane region vfu_A02202 PF00664 ABC transporter transmembrane region vfu_A02202 PF00005 ABC transporter vfu_A02206 PF00849 RNA pseudouridylate synthase vfu_A02206 PF01479 S4 domain vfu_A02207 PF01300 Telomere recombination vfu_A02208 PF02838 Glycosyl hydrolase family 20, domain 2 vfu_A02208 PF00728 Glycosyl hydrolase family 20, catalytic domain vfu_A02209 PF01081 KDPG and KHG aldolase vfu_A02210 PF00294 pfkB family carbohydrate kinase vfu_A02211 PF00474 Sodium:solute symporter family vfu_A02213 PF07969 Amidohydrolase family vfu_A02215 PF01418 Helix-turn-helix domain, rpiR family vfu_A02215 PF02685 Glucokinase vfu_A02215 PF01380 SIS domain vfu_A02216 PF02811 PHP domain vfu_A02218 PF04715 Anthranilate synthase component I, N terminal region vfu_A02218 PF00425 chorismate binding enzyme vfu_A02219 PF00117 Glutamine amidotransferase class-I vfu_A02220 PF02885 Glycosyl transferase family, helical bundle domain vfu_A02220 PF00591 Glycosyl transferase family, a/b domain vfu_A02221 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase vfu_A02221 PF00218 Indole-3-glycerol phosphate synthase vfu_A02222 PF00291 Pyridoxal-phosphate dependent enzyme vfu_A02224 PF00375 Sodium:dicarboxylate symporter family vfu_A02225 PF04279 Intracellular septation protein A vfu_A02226 PF03061 Thioesterase superfamily vfu_A02227 PF03795 YCII-related domain vfu_A02229 PF02743 Cache domain vfu_A02229 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A02229 PF00672 HAMP domain vfu_A02230 PF08267 Cobalamin-independent synthase, N-terminal domain vfu_A02230 PF01717 Cobalamin-independent synthase, Catalytic domain vfu_A02232 PF00691 OmpA family vfu_A02232 PF13677 Membrane MotB of proton-channel complex MotA/MotB vfu_A02233 PF01618 MotA/TolQ/ExbB proton channel family vfu_A02234 PF04539 Sigma-70 region 3 vfu_A02234 PF04542 Sigma-70 region 2 vfu_A02234 PF04545 Sigma-70, region 4 vfu_A02239 PF02465 Flagellar hook-associated protein 2 N-terminus vfu_A02239 PF07195 Flagellar hook-associated protein 2 C-terminus vfu_A02239 PF07196 Flagellin hook IN motif vfu_A02240 PF00669 Bacterial flagellin N-terminal helical region vfu_A02240 PF00700 Bacterial flagellin C-terminal helical region vfu_A02242 PF00669 Bacterial flagellin N-terminal helical region vfu_A02242 PF00700 Bacterial flagellin C-terminal helical region vfu_A02244 PF00669 Bacterial flagellin N-terminal helical region vfu_A02244 PF00700 Bacterial flagellin C-terminal helical region vfu_A02245 PF00771 FHIPEP family vfu_A02250 PF14842 FliG N-terminal domain vfu_A02250 PF14841 FliG middle domain vfu_A02250 PF01706 FliG C-terminal domain vfu_A02251 PF01514 Secretory protein of YscJ/FliF family vfu_A02251 PF08345 Flagellar M-ring protein C-terminal vfu_A02252 PF02049 Flagellar hook-basal body complex protein FliE vfu_A02258 PF02119 Flagellar P-ring protein vfu_A02259 PF02107 Flagellar L-ring protein vfu_A02260 PF00460 Flagella basal body rod protein vfu_A02260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A02261 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A02261 PF00460 Flagella basal body rod protein vfu_A02262 PF07559 Flagellar basal body protein FlaE vfu_A02262 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A02262 PF00460 Flagella basal body rod protein vfu_A02264 PF13861 FlgD Tudor-like domain vfu_A02264 PF13860 FlgD Ig-like domain vfu_A02264 PF03963 Flagellar hook capping protein - N-terminal region vfu_A02265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vfu_A02265 PF00460 Flagella basal body rod protein vfu_A02266 PF00460 Flagella basal body rod protein vfu_A02268 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term vfu_A02269 PF00813 FliP family vfu_A02270 PF01313 Bacterial export proteins, family 3 vfu_A02271 PF01311 Bacterial export proteins, family 1 vfu_A02272 PF01312 FlhB HrpN YscU SpaS Family vfu_A02274 PF06406 StbA protein vfu_A02275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02275 PF03466 LysR substrate binding domain vfu_A02278 PF05193 Peptidase M16 inactive domain vfu_A02278 PF00675 Insulinase (Peptidase family M16) vfu_A02282 PF00563 EAL domain vfu_A02282 PF00196 Bacterial regulatory proteins, luxR family vfu_A02283 PF12729 Four helix bundle sensory module for signal transduction vfu_A02283 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A02283 PF00672 HAMP domain vfu_A02286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02286 PF03466 LysR substrate binding domain vfu_A02288 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily vfu_A02289 PF03358 NADPH-dependent FMN reductase vfu_A02290 PF00005 ABC transporter vfu_A02290 PF12848 ABC transporter vfu_A02291 PF08497 Radical SAM N-terminal vfu_A02291 PF11842 Domain of unknown function (DUF3362) vfu_A02291 PF04055 Radical SAM superfamily vfu_A02293 PF04616 Glycosyl hydrolases family 43 vfu_A02293 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain vfu_A02294 PF00132 Bacterial transferase hexapeptide (six repeats) vfu_A02294 PF12464 Maltose acetyltransferase vfu_A02294 PF14602 Hexapeptide repeat of succinyl-transferase vfu_A02295 PF00266 Aminotransferase class-V vfu_A02297 PF00512 His Kinase A (phospho-acceptor) domain vfu_A02297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A02297 PF00497 Bacterial extracellular solute-binding proteins, family 3 vfu_A02301 PF04993 TfoX N-terminal domain vfu_A02301 PF04994 TfoX C-terminal domain vfu_A02304 PF03956 Lysine exporter LysO vfu_A02306 PF00282 Pyridoxal-dependent decarboxylase conserved domain vfu_A02307 PF01380 SIS domain vfu_A02307 PF01418 Helix-turn-helix domain, rpiR family vfu_A02308 PF00465 Iron-containing alcohol dehydrogenase vfu_A02309 PF00462 Glutaredoxin vfu_A02310 PF06826 Predicted Permease Membrane Region vfu_A02310 PF02080 TrkA-C domain vfu_A02312 PF07055 Enoyl reductase FAD binding domain vfu_A02312 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase vfu_A02312 PF12241 Trans-2-enoyl-CoA reductase catalytic region vfu_A02313 PF00441 Acyl-CoA dehydrogenase, C-terminal domain vfu_A02313 PF02770 Acyl-CoA dehydrogenase, middle domain vfu_A02313 PF09317 Domain of unknown function (DUF1974) vfu_A02313 PF02771 Acyl-CoA dehydrogenase, N-terminal domain vfu_A02317 PF00171 Aldehyde dehydrogenase family vfu_A02319 PF07670 Nucleoside recognition vfu_A02320 PF07670 Nucleoside recognition vfu_A02324 PF01116 Fructose-bisphosphate aldolase class-II vfu_A02325 PF01979 Amidohydrolase family vfu_A02326 PF03610 PTS system fructose IIA component vfu_A02327 PF03613 PTS system mannose/fructose/sorbose family IID component vfu_A02328 PF03609 PTS system sorbose-specific iic component vfu_A02330 PF03830 PTS system sorbose subfamily IIB component vfu_A02331 PF01380 SIS domain vfu_A02332 PF08013 Tagatose 6 phosphate kinase vfu_A02333 PF08220 DeoR-like helix-turn-helix domain vfu_A02333 PF00455 DeoR C terminal sensor domain vfu_A02335 PF00455 DeoR C terminal sensor domain vfu_A02335 PF08220 DeoR-like helix-turn-helix domain vfu_A02336 PF06610 L-alanine exporter vfu_A02337 PF09308 LuxQ, periplasmic vfu_A02337 PF00512 His Kinase A (phospho-acceptor) domain vfu_A02337 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A02337 PF00072 Response regulator receiver domain vfu_A02339 PF02445 Quinolinate synthetase A protein vfu_A02340 PF13174 Tetratricopeptide repeat vfu_A02340 PF16331 TolA binding protein trimerisation vfu_A02341 PF00691 OmpA family vfu_A02342 PF07676 WD40-like Beta Propeller Repeat vfu_A02342 PF04052 TolB amino-terminal domain vfu_A02344 PF02472 Biopolymer transport protein ExbD/TolR vfu_A02345 PF01618 MotA/TolQ/ExbB proton channel family vfu_A02346 PF03061 Thioesterase superfamily vfu_A02348 PF08173 Membrane bound YbgT-like protein vfu_A02349 PF02322 Cytochrome bd terminal oxidase subunit II vfu_A02350 PF01654 Cytochrome bd terminal oxidase subunit I vfu_A02351 PF17864 RuvB AAA lid domain vfu_A02351 PF05491 RuvB C-terminal winged helix domain vfu_A02351 PF05496 Holliday junction DNA helicase RuvB P-loop domain vfu_A02352 PF07499 RuvA, C-terminal domain vfu_A02352 PF01330 RuvA N terminal domain vfu_A02353 PF02075 Crossover junction endodeoxyribonuclease RuvC vfu_A02354 PF01406 tRNA synthetases class I (C) catalytic domain vfu_A02354 PF09190 DALR domain vfu_A02355 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD vfu_A02356 PF00149 Calcineurin-like phosphoesterase vfu_A02357 PF08668 HDOD domain vfu_A02357 PF00563 EAL domain vfu_A02358 PF02810 SEC-C motif vfu_A02359 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) vfu_A02361 PF13307 Helicase C-terminal domain vfu_A02361 PF06733 DEAD_2 vfu_A02362 PF07445 Primosomal replication protein priC vfu_A02363 PF10689 Protein of unknown function (DUF2496) vfu_A02364 PF00672 HAMP domain vfu_A02364 PF02743 Cache domain vfu_A02364 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A02365 PF03372 Endonuclease/Exonuclease/phosphatase family vfu_A02366 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A02367 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A02368 PF00497 Bacterial extracellular solute-binding proteins, family 3 vfu_A02369 PF00005 ABC transporter vfu_A02371 PF02901 Pyruvate formate lyase-like vfu_A02371 PF01228 Glycine radical vfu_A02372 PF02901 Pyruvate formate lyase-like vfu_A02372 PF01228 Glycine radical vfu_A02373 PF01228 Glycine radical vfu_A02376 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A02376 PF00672 HAMP domain vfu_A02377 PF04055 Radical SAM superfamily vfu_A02380 PF06629 MltA-interacting protein MipA vfu_A02382 PF06798 PrkA serine protein kinase C-terminal domain vfu_A02382 PF08298 PrkA AAA domain vfu_A02383 PF04285 Protein of unknown function (DUF444) vfu_A02384 PF04293 SpoVR like protein vfu_A02385 PF02348 Cytidylyltransferase vfu_A02386 PF03966 Trm112p-like protein vfu_A02387 PF02606 Tetraacyldisaccharide-1-P 4'-kinase vfu_A02388 PF00005 ABC transporter vfu_A02388 PF00664 ABC transporter transmembrane region vfu_A02389 PF13567 Domain of unknown function (DUF4131) vfu_A02389 PF03772 Competence protein vfu_A02389 PF00753 Metallo-beta-lactamase superfamily vfu_A02391 PF12704 MacB-like periplasmic core domain vfu_A02391 PF02687 FtsX-like permease family vfu_A02392 PF00005 ABC transporter vfu_A02393 PF12704 MacB-like periplasmic core domain vfu_A02393 PF02687 FtsX-like permease family vfu_A02395 PF02559 CarD-like/TRCF domain vfu_A02395 PF00271 Helicase conserved C-terminal domain vfu_A02395 PF00270 DEAD/DEAH box helicase vfu_A02395 PF03461 TRCF domain vfu_A02395 PF17757 UvrB interaction domain vfu_A02397 PF13302 Acetyltransferase (GNAT) domain vfu_A02398 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_A02401 PF08139 Prokaryotic membrane lipoprotein lipid attachment site vfu_A02401 PF13036 Peptidoglycan-synthase activator LpoB vfu_A02405 PF01230 HIT domain vfu_A02406 PF00672 HAMP domain vfu_A02406 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A02408 PF00392 Bacterial regulatory proteins, gntR family vfu_A02408 PF07840 FadR C-terminal domain vfu_A02409 PF06450 Bacterial Na+/H+ antiporter B (NhaB) vfu_A02410 PF02600 Disulfide bond formation protein DsbB vfu_A02411 PF09397 Ftsk gamma domain vfu_A02411 PF01580 FtsK/SpoIIIE family vfu_A02411 PF17854 FtsK alpha domain vfu_A02411 PF13491 4TM region of DNA translocase FtsK/SpoIIIE vfu_A02412 PF01037 Lrp/AsnC ligand binding domain vfu_A02413 PF01262 Alanine dehydrogenase/PNT, C-terminal domain vfu_A02413 PF05222 Alanine dehydrogenase/PNT, N-terminal domain vfu_A02415 PF03466 LysR substrate binding domain vfu_A02415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02418 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) vfu_A02419 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family vfu_A02420 PF18073 Rubredoxin metal binding domain vfu_A02421 PF06305 Lipopolysaccharide assembly protein A domain vfu_A02423 PF00575 S1 RNA binding domain vfu_A02424 PF02224 Cytidylate kinase vfu_A02426 PF13145 PPIC-type PPIASE domain vfu_A02427 PF00216 Bacterial DNA-binding protein vfu_A02428 PF02190 ATP-dependent protease La (LON) substrate-binding domain vfu_A02428 PF00004 ATPase family associated with various cellular activities (AAA) vfu_A02428 PF05362 Lon protease (S16) C-terminal proteolytic domain vfu_A02429 PF10431 C-terminal, D2-small domain, of ClpB protein vfu_A02429 PF07724 AAA domain (Cdc48 subfamily) vfu_A02429 PF06689 ClpX C4-type zinc finger vfu_A02430 PF00574 Clp protease vfu_A02431 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase vfu_A02431 PF05698 Bacterial trigger factor protein (TF) C-terminus vfu_A02431 PF05697 Bacterial trigger factor protein (TF) vfu_A02432 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A02432 PF00512 His Kinase A (phospho-acceptor) domain vfu_A02433 PF02954 Bacterial regulatory protein, Fis family vfu_A02433 PF00072 Response regulator receiver domain vfu_A02433 PF00158 Sigma-54 interaction domain vfu_A02434 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component vfu_A02435 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component vfu_A02436 PF03480 Bacterial extracellular solute-binding protein, family 7 vfu_A02437 PF05922 Peptidase inhibitor I9 vfu_A02437 PF00082 Subtilase family vfu_A02437 PF04151 Bacterial pre-peptidase C-terminal domain vfu_A02438 PF01547 Bacterial extracellular solute-binding protein vfu_A02439 PF00672 HAMP domain vfu_A02439 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A02439 PF00512 His Kinase A (phospho-acceptor) domain vfu_A02440 PF00486 Transcriptional regulatory protein, C terminal vfu_A02440 PF00072 Response regulator receiver domain vfu_A02441 PF02696 Uncharacterized ACR, YdiU/UPF0061 family vfu_A02442 PF02696 Uncharacterized ACR, YdiU/UPF0061 family vfu_A02443 PF03313 Serine dehydratase alpha chain vfu_A02443 PF03315 Serine dehydratase beta chain vfu_A02445 PF00795 Carbon-nitrogen hydrolase vfu_A02445 PF00583 Acetyltransferase (GNAT) family vfu_A02447 PF03707 Bacterial signalling protein N terminal repeat vfu_A02447 PF00990 Diguanylate cyclase, GGDEF domain vfu_A02447 PF00563 EAL domain vfu_A02451 PF00970 Oxidoreductase FAD-binding domain vfu_A02451 PF00175 Oxidoreductase NAD-binding domain vfu_A02456 PF00072 Response regulator receiver domain vfu_A02456 PF00196 Bacterial regulatory proteins, luxR family vfu_A02457 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A02457 PF05231 MASE1 vfu_A02457 PF07730 Histidine kinase vfu_A02458 PF07690 Major Facilitator Superfamily vfu_A02460 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A02461 PF00005 ABC transporter vfu_A02461 PF08402 TOBE domain vfu_A02462 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain vfu_A02462 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain vfu_A02464 PF07670 Nucleoside recognition vfu_A02464 PF07662 Na+ dependent nucleoside transporter C-terminus vfu_A02464 PF01773 Na+ dependent nucleoside transporter N-terminus vfu_A02465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02465 PF03466 LysR substrate binding domain vfu_A02466 PF13406 Transglycosylase SLT domain vfu_A02467 PF05166 YcgL domain vfu_A02468 PF05209 Septum formation inhibitor MinC, N-terminal domain vfu_A02468 PF03775 Septum formation inhibitor MinC, C-terminal domain vfu_A02469 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain vfu_A02470 PF03776 Septum formation topological specificity factor MinE vfu_A02473 PF00570 HRDC domain vfu_A02473 PF01612 3'-5' exonuclease vfu_A02474 PF00501 AMP-binding enzyme vfu_A02474 PF13193 AMP-binding enzyme C-terminal domain vfu_A02475 PF00561 alpha/beta hydrolase fold vfu_A02478 PF00814 Glycoprotease family vfu_A02479 PF04851 Type III restriction enzyme, res subunit vfu_A02479 PF13307 Helicase C-terminal domain vfu_A02481 PF00551 Formyl transferase vfu_A02481 PF01842 ACT domain vfu_A02482 PF00724 NADH:flavin oxidoreductase / NADH oxidase family vfu_A02482 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_A02483 PF01343 Peptidase family S49 vfu_A02484 PF17763 Glutaminase/Asparaginase C-terminal domain vfu_A02484 PF00710 Asparaginase, N-terminal vfu_A02485 PF07023 Protein of unknown function (DUF1315) vfu_A02487 PF01641 SelR domain vfu_A02488 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain vfu_A02488 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain vfu_A02489 PF01263 Aldose 1-epimerase vfu_A02490 PF13847 Methyltransferase domain vfu_A02493 PF01043 SecA preprotein cross-linking domain vfu_A02493 PF07517 SecA DEAD-like domain vfu_A02493 PF02810 SEC-C motif vfu_A02493 PF07516 SecA Wing and Scaffold domain vfu_A02526 PF05840 Bacteriophage replication gene A protein (GPA) vfu_A02531 PF06892 Phage regulatory protein CII (CP76) vfu_A02539 PF00589 Phage integrase family vfu_A02539 PF02899 Phage integrase, N-terminal SAM-like domain vfu_A02540 PF03692 Putative zinc- or iron-chelating domain vfu_A02542 PF00230 Major intrinsic protein vfu_A02543 PF13662 Toprim domain vfu_A02543 PF02132 RecR protein vfu_A02544 PF02575 YbaB/EbfC DNA-binding family vfu_A02545 PF12170 DNA polymerase III tau subunit V interacting with alpha vfu_A02545 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding vfu_A02545 PF12169 DNA polymerase III subunits gamma and tau domain III vfu_A02546 PF00156 Phosphoribosyl transferase domain vfu_A02547 PF04304 Protein of unknown function (DUF454) vfu_A02549 PF00072 Response regulator receiver domain vfu_A02550 PF03466 LysR substrate binding domain vfu_A02550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02551 PF00881 Nitroreductase family vfu_A02552 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain vfu_A02552 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain vfu_A02552 PF00378 Enoyl-CoA hydratase/isomerase vfu_A02553 PF00108 Thiolase, N-terminal domain vfu_A02553 PF02803 Thiolase, C-terminal domain vfu_A02554 PF08281 Sigma-70, region 4 vfu_A02554 PF04542 Sigma-70 region 2 vfu_A02556 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) vfu_A02557 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) vfu_A02558 PF01451 Low molecular weight phosphotyrosine protein phosphatase vfu_A02561 PF13426 PAS domain vfu_A02561 PF08447 PAS fold vfu_A02561 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A02563 PF12557 Cob(I)alamin adenosyltransferase N terminal vfu_A02563 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP vfu_A02564 PF05170 AsmA family vfu_A02565 PF00485 Phosphoribulokinase / Uridine kinase family vfu_A02566 PF10609 NUBPL iron-transfer P-loop NTPase vfu_A02567 PF09334 tRNA synthetases class I (M) vfu_A02567 PF01588 Putative tRNA binding domain vfu_A02568 PF09334 tRNA synthetases class I (M) vfu_A02568 PF01588 Putative tRNA binding domain vfu_A02570 PF01048 Phosphorylase superfamily vfu_A02571 PF00403 Heavy-metal-associated domain vfu_A02572 PF00571 CBS domain vfu_A02572 PF00478 IMP dehydrogenase / GMP reductase domain vfu_A02573 PF00990 Diguanylate cyclase, GGDEF domain vfu_A02573 PF08448 PAS fold vfu_A02574 PF02391 MoaE protein vfu_A02575 PF02597 ThiS family vfu_A02576 PF01967 MoaC family vfu_A02577 PF00994 Probable molybdopterin binding domain vfu_A02578 PF06463 Molybdenum Cofactor Synthesis C vfu_A02578 PF04055 Radical SAM superfamily vfu_A02579 PF01933 Uncharacterised protein family UPF0052 vfu_A02580 PF01627 Hpt domain vfu_A02581 PF00072 Response regulator receiver domain vfu_A02581 PF00158 Sigma-54 interaction domain vfu_A02581 PF02954 Bacterial regulatory protein, Fis family vfu_A02582 PF04851 Type III restriction enzyme, res subunit vfu_A02582 PF12344 Ultra-violet resistance protein B vfu_A02582 PF00271 Helicase conserved C-terminal domain vfu_A02582 PF17757 UvrB interaction domain vfu_A02582 PF02151 UvrB/uvrC motif vfu_A02584 PF02901 Pyruvate formate lyase-like vfu_A02584 PF01228 Glycine radical vfu_A02585 PF02508 Rnf-Nqr subunit, membrane protein vfu_A02586 PF04060 Putative Fe-S cluster vfu_A02587 PF12838 4Fe-4S dicluster domain vfu_A02587 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit vfu_A02587 PF10531 SLBB domain vfu_A02587 PF13375 RnfC Barrel sandwich hybrid domain vfu_A02588 PF03116 NQR2, RnfD, RnfE family vfu_A02589 PF04205 FMN-binding domain vfu_A02590 PF02508 Rnf-Nqr subunit, membrane protein vfu_A02591 PF00730 HhH-GPD superfamily base excision DNA repair protein vfu_A02591 PF00633 Helix-hairpin-helix motif vfu_A02591 PF10576 Iron-sulfur binding domain of endonuclease III vfu_A02592 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily vfu_A02593 PF10952 Protein of unknown function (DUF2753) vfu_A02594 PF00691 OmpA family vfu_A02594 PF18393 MotY N-terminal domain vfu_A02595 PF00929 Exonuclease vfu_A02596 PF03553 Na+/H+ antiporter family vfu_A02596 PF13726 Na+-H+ antiporter family vfu_A02597 PF00156 Phosphoribosyl transferase domain vfu_A02598 PF02674 Colicin V production protein vfu_A02599 PF05036 Sporulation related domain vfu_A02600 PF02875 Mur ligase family, glutamate ligase domain vfu_A02600 PF08245 Mur ligase middle domain vfu_A02601 PF17848 Acetyl-coA carboxylase zinc finger domain vfu_A02601 PF01039 Carboxyl transferase domain vfu_A02602 PF01416 tRNA pseudouridine synthase vfu_A02604 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain vfu_A02604 PF00749 tRNA synthetases class I (E and Q), catalytic domain vfu_A02605 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 vfu_A02605 PF00367 phosphotransferase system, EIIB vfu_A02605 PF02378 Phosphotransferase system, EIIC vfu_A02606 PF01979 Amidohydrolase family vfu_A02607 PF01047 MarR family vfu_A02607 PF00480 ROK family vfu_A02608 PF02254 TrkA-N domain vfu_A02608 PF00999 Sodium/hydrogen exchanger family vfu_A02609 PF13537 Glutamine amidotransferase domain vfu_A02609 PF00733 Asparagine synthase vfu_A02610 PF02357 Transcription termination factor nusG vfu_A02612 PF00854 POT family vfu_A02613 PF00762 Ferrochelatase vfu_A02614 PF05191 Adenylate kinase, active site lid vfu_A02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A02615 PF00183 Hsp90 protein vfu_A02616 PF00486 Transcriptional regulatory protein, C terminal vfu_A02617 PF17323 Trans-membrane regulatory protein ToxS vfu_A02619 PF12850 Calcineurin-like phosphoesterase superfamily domain vfu_A02622 PF07556 Protein of unknown function (DUF1538) vfu_A02623 PF07556 Protein of unknown function (DUF1538) vfu_A02624 PF01370 NAD dependent epimerase/dehydratase family vfu_A02624 PF08338 Domain of unknown function (DUF1731) vfu_A02625 PF00106 short chain dehydrogenase vfu_A02626 PF00085 Thioredoxin vfu_A02627 PF01145 SPFH domain / Band 7 family vfu_A02627 PF16200 C-terminal region of band_7 vfu_A02629 PF13411 MerR HTH family regulatory protein vfu_A02631 PF13609 Gram-negative porin vfu_A02632 PF03120 NAD-dependent DNA ligase OB-fold domain vfu_A02632 PF03119 NAD-dependent DNA ligase C4 zinc finger domain vfu_A02632 PF12826 Helix-hairpin-helix motif vfu_A02632 PF00533 BRCA1 C Terminus (BRCT) domain vfu_A02632 PF01653 NAD-dependent DNA ligase adenylation domain vfu_A02633 PF04354 ZipA, C-terminal FtsZ-binding domain vfu_A02635 PF00291 Pyridoxal-phosphate dependent enzyme vfu_A02636 PF00381 PTS HPr component phosphorylation site vfu_A02637 PF05524 PEP-utilising enzyme, N-terminal vfu_A02637 PF02896 PEP-utilising enzyme, TIM barrel domain vfu_A02637 PF00391 PEP-utilising enzyme, mobile domain vfu_A02638 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 vfu_A02639 PF01494 FAD binding domain vfu_A02640 PF00919 Uncharacterized protein family UPF0004 vfu_A02640 PF04055 Radical SAM superfamily vfu_A02640 PF01938 TRAM domain vfu_A02641 PF02562 PhoH-like protein vfu_A02642 PF02130 Uncharacterized protein family UPF0054 vfu_A02643 PF00571 CBS domain vfu_A02643 PF03471 Transporter associated domain vfu_A02644 PF00795 Carbon-nitrogen hydrolase vfu_A02645 PF07295 Zinc-ribbon containing domain vfu_A02646 PF08264 Anticodon-binding domain of tRNA vfu_A02646 PF00133 tRNA synthetases class I (I, L, M and V) vfu_A02646 PF13603 Leucyl-tRNA synthetase, Domain 2 vfu_A02647 PF04390 Lipopolysaccharide-assembly vfu_A02648 PF06144 DNA polymerase III, delta subunit vfu_A02648 PF14840 Processivity clamp loader gamma complex DNA pol III C-term vfu_A02650 PF02590 Predicted SPOUT methyltransferase vfu_A02651 PF00905 Penicillin binding protein transpeptidase domain vfu_A02651 PF03717 Penicillin-binding Protein dimerisation domain vfu_A02652 PF01098 Cell cycle protein vfu_A02653 PF03330 Lytic transglycolase vfu_A02653 PF05036 Sporulation related domain vfu_A02654 PF07943 Penicillin-binding protein 5, C-terminal domain vfu_A02654 PF00768 D-alanyl-D-alanine carboxypeptidase vfu_A02656 PF04359 Protein of unknown function (DUF493) vfu_A02657 PF03099 Biotin/lipoate A/B protein ligase family vfu_A02658 PF04055 Radical SAM superfamily vfu_A02658 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family vfu_A02660 PF00464 Serine hydroxymethyltransferase vfu_A02663 PF00873 AcrB/AcrD/AcrF family vfu_A02664 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_A02665 PF07690 Major Facilitator Superfamily vfu_A02666 PF00196 Bacterial regulatory proteins, luxR family vfu_A02666 PF00072 Response regulator receiver domain vfu_A02667 PF07730 Histidine kinase vfu_A02667 PF05231 MASE1 vfu_A02667 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A02668 PF07690 Major Facilitator Superfamily vfu_A02669 PF16657 Maltogenic Amylase, C-terminal domain vfu_A02669 PF00128 Alpha amylase, catalytic domain vfu_A02670 PF02378 Phosphotransferase system, EIIC vfu_A02670 PF00367 phosphotransferase system, EIIB vfu_A02672 PF00356 Bacterial regulatory proteins, lacI family vfu_A02675 PF00005 ABC transporter vfu_A02675 PF09383 NIL domain vfu_A02676 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A02677 PF03180 NLPA lipoprotein vfu_A02678 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) vfu_A02679 PF07348 Syd protein (SUKH-2) vfu_A02680 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term vfu_A02680 PF14489 QueF-like protein vfu_A02682 PF00072 Response regulator receiver domain vfu_A02682 PF00990 Diguanylate cyclase, GGDEF domain vfu_A02683 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases vfu_A02683 PF03641 Possible lysine decarboxylase vfu_A02683 PF11892 Domain of unknown function (DUF3412) vfu_A02684 PF11892 Domain of unknown function (DUF3412) vfu_A02684 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases vfu_A02684 PF03641 Possible lysine decarboxylase vfu_A02685 PF01367 5'-3' exonuclease, C-terminal SAM fold vfu_A02685 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain vfu_A02686 PF01728 FtsJ-like methyltransferase vfu_A02686 PF18125 RlmM ferredoxin-like domain vfu_A02687 PF04241 Protein of unknown function (DUF423) vfu_A02689 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02689 PF03466 LysR substrate binding domain vfu_A02691 PF02926 THUMP domain vfu_A02691 PF02568 Thiamine biosynthesis protein (ThiI) vfu_A02692 PF13677 Membrane MotB of proton-channel complex MotA/MotB vfu_A02692 PF00691 OmpA family vfu_A02693 PF01618 MotA/TolQ/ExbB proton channel family vfu_A02694 PF02609 Exonuclease VII small subunit vfu_A02695 PF00348 Polyprenyl synthetase vfu_A02696 PF13292 1-deoxy-D-xylulose-5-phosphate synthase vfu_A02696 PF02780 Transketolase, C-terminal domain vfu_A02696 PF02779 Transketolase, pyrimidine binding domain vfu_A02697 PF00849 RNA pseudouridylate synthase vfu_A02698 PF04287 tRNA pseudouridine synthase C vfu_A02702 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 vfu_A02704 PF03806 AbgT putative transporter family vfu_A02705 PF01197 Ribosomal protein L31 vfu_A02706 PF18389 TrmO C-terminal domain vfu_A02706 PF01980 tRNA-methyltransferase O vfu_A02707 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) vfu_A02707 PF03129 Anticodon binding domain vfu_A02707 PF04073 Aminoacyl-tRNA editing domain vfu_A02709 PF06786 Uncharacterised protein family (UPF0253) vfu_A02711 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster vfu_A02711 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region vfu_A02711 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_A02712 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain vfu_A02712 PF02769 AIR synthase related protein, C-terminal domain vfu_A02712 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal vfu_A02713 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal vfu_A02713 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain vfu_A02713 PF02769 AIR synthase related protein, C-terminal domain vfu_A02714 PF01464 Transglycosylase SLT domain vfu_A02714 PF00497 Bacterial extracellular solute-binding proteins, family 3 vfu_A02717 PF14437 MafB19-like deaminase vfu_A02718 PF03466 LysR substrate binding domain vfu_A02718 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02719 PF00107 Zinc-binding dehydrogenase vfu_A02719 PF08240 Alcohol dehydrogenase GroES-like domain vfu_A02720 PF00756 Putative esterase vfu_A02721 PF03806 AbgT putative transporter family vfu_A02727 PF00684 DnaJ central domain vfu_A02727 PF01556 DnaJ C terminal domain vfu_A02727 PF00226 DnaJ domain vfu_A02728 PF00012 Hsp70 protein vfu_A02729 PF00375 Sodium:dicarboxylate symporter family vfu_A02730 PF01025 GrpE vfu_A02731 PF01513 ATP-NAD kinase vfu_A02732 PF02463 RecF/RecN/SMC N terminal domain vfu_A02733 PF04355 SmpA / OmlA family vfu_A02734 PF03658 RnfH family Ubiquitin vfu_A02735 PF03364 Polyketide cyclase / dehydrase and lipid transport vfu_A02736 PF01668 SmpB protein vfu_A02741 PF02384 N-6 DNA Methylase vfu_A02742 PF03466 LysR substrate binding domain vfu_A02742 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02743 PF01266 FAD dependent oxidoreductase vfu_A02745 PF01235 Sodium:alanine symporter family vfu_A02746 PF01758 Sodium Bile acid symporter family vfu_A02750 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain vfu_A02750 PF02753 Pili assembly chaperone PapD, C-terminal domain vfu_A02751 PF00577 Outer membrane usher protein vfu_A02751 PF13954 PapC N-terminal domain vfu_A02751 PF13953 PapC C-terminal domain vfu_A02752 PF00419 Fimbrial protein vfu_A02753 PF00486 Transcriptional regulatory protein, C terminal vfu_A02754 PF01184 GPR1/FUN34/yaaH family vfu_A02755 PF00704 Glycosyl hydrolases family 18 vfu_A02755 PF06483 Chitinase C vfu_A02765 PF13356 Arm DNA-binding domain vfu_A02765 PF00589 Phage integrase family vfu_A02766 PF00117 Glutamine amidotransferase class-I vfu_A02766 PF00958 GMP synthase C terminal domain vfu_A02766 PF02540 NAD synthase vfu_A02767 PF00571 CBS domain vfu_A02767 PF00478 IMP dehydrogenase / GMP reductase domain vfu_A02768 PF13742 OB-fold nucleic acid binding domain vfu_A02768 PF02601 Exonuclease VII, large subunit vfu_A02771 PF01926 50S ribosome-binding GTPase vfu_A02771 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal vfu_A02772 PF13360 PQQ-like domain vfu_A02773 PF09976 Tetratricopeptide repeat-like domain vfu_A02774 PF03129 Anticodon binding domain vfu_A02774 PF13393 Histidyl-tRNA synthetase vfu_A02775 PF04551 GcpE protein vfu_A02776 PF04551 GcpE protein vfu_A02777 PF13464 Domain of unknown function (DUF4115) vfu_A02778 PF04055 Radical SAM superfamily vfu_A02779 PF00334 Nucleoside diphosphate kinase vfu_A02780 PF12404 Peptidase vfu_A02780 PF00883 Cytosol aminopeptidase family, catalytic domain vfu_A02781 PF04384 Iron-sulphur cluster assembly vfu_A02782 PF00111 2Fe-2S iron-sulfur cluster binding domain vfu_A02783 PF00012 Hsp70 protein vfu_A02784 PF00226 DnaJ domain vfu_A02784 PF07743 HSCB C-terminal oligomerisation domain vfu_A02785 PF01521 Iron-sulphur cluster biosynthesis vfu_A02786 PF01592 NifU-like N terminal domain vfu_A02787 PF00266 Aminotransferase class-V vfu_A02788 PF02082 Transcriptional regulator vfu_A02789 PF00588 SpoU rRNA Methylase family vfu_A02790 PF00459 Inositol monophosphatase family vfu_A02791 PF00857 Isochorismatase family vfu_A02792 PF02355 Protein export membrane protein vfu_A02792 PF07549 SecD/SecF GG Motif vfu_A02793 PF07549 SecD/SecF GG Motif vfu_A02793 PF13721 SecD export protein N-terminal TM region vfu_A02793 PF02355 Protein export membrane protein vfu_A02794 PF02699 Preprotein translocase subunit vfu_A02795 PF01702 Queuine tRNA-ribosyltransferase vfu_A02796 PF02547 Queuosine biosynthesis protein vfu_A02797 PF00571 CBS domain vfu_A02798 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_A02798 PF00672 HAMP domain vfu_A02799 PF00463 Isocitrate lyase family vfu_A02800 PF01274 Malate synthase vfu_A02801 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02801 PF03466 LysR substrate binding domain vfu_A02802 PF00578 AhpC/TSA family vfu_A02802 PF10417 C-terminal domain of 1-Cys peroxiredoxin vfu_A02803 PF03932 CutC family vfu_A02804 PF03976 Polyphosphate kinase 2 (PPK2) vfu_A02805 PF01895 PhoU domain vfu_A02806 PF00005 ABC transporter vfu_A02807 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A02808 PF00528 Binding-protein-dependent transport system inner membrane component vfu_A02809 PF13089 Polyphosphate kinase N-terminal domain vfu_A02809 PF17941 Polyphosphate kinase C-terminal domain 1 vfu_A02809 PF02503 Polyphosphate kinase middle domain vfu_A02809 PF13090 Polyphosphate kinase C-terminal domain 2 vfu_A02810 PF02541 Ppx/GppA phosphatase family vfu_A02811 PF12849 PBP superfamily domain vfu_A02812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A02812 PF00512 His Kinase A (phospho-acceptor) domain vfu_A02812 PF00989 PAS fold vfu_A02812 PF11808 Phosphate regulon sensor protein PhoR vfu_A02813 PF00072 Response regulator receiver domain vfu_A02813 PF00486 Transcriptional regulatory protein, C terminal vfu_A02814 PF04381 Putative exonuclease, RdgC vfu_A02816 PF12838 4Fe-4S dicluster domain vfu_A02818 PF07690 Major Facilitator Superfamily vfu_A02820 PF04542 Sigma-70 region 2 vfu_A02820 PF04545 Sigma-70, region 4 vfu_A02822 PF03502 Nucleoside-specific channel-forming protein, Tsx vfu_A02823 PF02558 Ketopantoate reductase PanE/ApbA vfu_A02823 PF08546 Ketopantoate reductase PanE/ApbA C terminal vfu_A02824 PF01965 DJ-1/PfpI family vfu_A02825 PF00266 Aminotransferase class-V vfu_A02826 PF02657 Fe-S metabolism associated domain vfu_A02827 PF00899 ThiF family vfu_A02828 PF06725 3D domain vfu_A02828 PF03562 MltA specific insert domain vfu_A02831 PF00583 Acetyltransferase (GNAT) family vfu_A02831 PF00696 Amino acid kinase family vfu_A02833 PF13538 UvrD-like helicase C-terminal domain vfu_A02834 PF12705 PD-(D/E)XK nuclease superfamily vfu_A02834 PF00580 UvrD/REP helicase N-terminal domain vfu_A02834 PF13361 UvrD-like helicase C-terminal domain vfu_A02835 PF17946 RecC C-terminal domain vfu_A02837 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02837 PF03466 LysR substrate binding domain vfu_A02838 PF07130 YebG protein vfu_A02839 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle vfu_A02839 PF14602 Hexapeptide repeat of succinyl-transferase vfu_A02840 PF00962 Adenosine/AMP deaminase vfu_A02842 PF00583 Acetyltransferase (GNAT) family vfu_A02844 PF01544 CorA-like Mg2+ transporter protein vfu_A02847 PF01588 Putative tRNA binding domain vfu_A02848 PF01263 Aldose 1-epimerase vfu_A02850 PF02417 Chromate transporter vfu_A02851 PF00072 Response regulator receiver domain vfu_A02855 PF00437 Type II/IV secretion system protein vfu_A02861 PF04972 BON domain vfu_A02861 PF00263 Bacterial type II and III secretion system protein vfu_A02861 PF13629 Pilus formation protein N terminal region vfu_A02866 PF12833 Helix-turn-helix domain vfu_A02866 PF02311 AraC-like ligand binding domain vfu_A02867 PF00501 AMP-binding enzyme vfu_A02869 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02869 PF03466 LysR substrate binding domain vfu_A02871 PF03466 LysR substrate binding domain vfu_A02871 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A02872 PF03144 Elongation factor Tu domain 2 vfu_A02872 PF00009 Elongation factor Tu GTP binding domain vfu_A02872 PF03764 Elongation factor G, domain IV vfu_A02872 PF14492 Elongation Factor G, domain II vfu_A02872 PF00679 Elongation factor G C-terminus vfu_A02873 PF18073 Rubredoxin metal binding domain vfu_A02875 PF18429 Domain of unknown function (DUF5609) vfu_A02877 PF01048 Phosphorylase superfamily vfu_A02879 PF01676 Metalloenzyme superfamily vfu_A02880 PF00591 Glycosyl transferase family, a/b domain vfu_A02880 PF02885 Glycosyl transferase family, helical bundle domain vfu_A02880 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain vfu_A02881 PF01791 DeoC/LacD family aldolase vfu_A02883 PF01773 Na+ dependent nucleoside transporter N-terminus vfu_A02883 PF07662 Na+ dependent nucleoside transporter C-terminus vfu_A02883 PF07670 Nucleoside recognition vfu_A02884 PF01026 TatD related DNase vfu_A02887 PF01235 Sodium:alanine symporter family vfu_A02888 PF01235 Sodium:alanine symporter family vfu_A02891 PF03167 Uracil DNA glycosylase superfamily vfu_A02893 PF01261 Xylose isomerase-like TIM barrel vfu_A02894 PF01228 Glycine radical vfu_A02895 PF14821 Threonine synthase N terminus vfu_A02895 PF00291 Pyridoxal-phosphate dependent enzyme vfu_A02896 PF00288 GHMP kinases N terminal domain vfu_A02896 PF08544 GHMP kinases C terminal vfu_A02897 PF00742 Homoserine dehydrogenase vfu_A02897 PF01842 ACT domain vfu_A02897 PF03447 Homoserine dehydrogenase, NAD binding domain vfu_A02897 PF13840 ACT domain vfu_A02897 PF00696 Amino acid kinase family vfu_A02899 PF03737 Aldolase/RraA vfu_A02901 PF00072 Response regulator receiver domain vfu_A02901 PF00486 Transcriptional regulatory protein, C terminal vfu_A02903 PF18415 Histidine kinase receptor ArcB trans-membrane domain vfu_A02903 PF01627 Hpt domain vfu_A02903 PF00989 PAS fold vfu_A02903 PF00072 Response regulator receiver domain vfu_A02903 PF00512 His Kinase A (phospho-acceptor) domain vfu_A02903 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_A02904 PF01590 GAF domain vfu_A02904 PF00563 EAL domain vfu_A02904 PF00990 Diguanylate cyclase, GGDEF domain vfu_A02904 PF00360 Phytochrome region vfu_A02905 PF04055 Radical SAM superfamily vfu_A02905 PF16199 Radical_SAM C-terminal domain vfu_A02906 PF01645 Conserved region in glutamate synthase vfu_A02906 PF00310 Glutamine amidotransferases class-II vfu_A02906 PF01493 GXGXG motif vfu_A02906 PF04898 Glutamate synthase central domain vfu_A02907 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_A02907 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster vfu_A02908 PF01645 Conserved region in glutamate synthase vfu_A02908 PF04898 Glutamate synthase central domain vfu_A02908 PF00310 Glutamine amidotransferases class-II vfu_A02908 PF01493 GXGXG motif vfu_A02909 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_A02909 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster vfu_A02911 PF01048 Phosphorylase superfamily vfu_A02912 PF03186 CobD/Cbib protein vfu_A02912 PF17113 Regulatory signalling modulator protein AmpE vfu_A02913 PF01497 Periplasmic binding protein vfu_A02914 PF03458 UPF0126 domain vfu_A02918 PF01925 Sulfite exporter TauE/SafE vfu_A02919 PF05870 Phenolic acid decarboxylase (PAD) vfu_A02921 PF02142 MGS-like domain vfu_A02921 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain vfu_A02921 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain vfu_A02922 PF00117 Glutamine amidotransferase class-I vfu_A02922 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain vfu_A02924 PF00293 NUDIX domain vfu_A02925 PF07516 SecA Wing and Scaffold domain vfu_A02925 PF01043 SecA preprotein cross-linking domain vfu_A02925 PF02810 SEC-C motif vfu_A02925 PF07517 SecA DEAD-like domain vfu_A02927 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase vfu_A02928 PF12327 FtsZ family, C-terminal domain vfu_A02928 PF00091 Tubulin/FtsZ family, GTPase domain vfu_A02929 PF02491 SHS2 domain inserted in FTSA vfu_A02930 PF03799 Cell division protein FtsQ vfu_A02930 PF08478 POTRA domain, FtsQ-type vfu_A02931 PF08245 Mur ligase middle domain vfu_A02931 PF01225 Mur ligase family, catalytic domain vfu_A02931 PF02875 Mur ligase family, glutamate ligase domain vfu_A02932 PF03033 Glycosyltransferase family 28 N-terminal domain vfu_A02932 PF04101 Glycosyltransferase family 28 C-terminal domain vfu_A02933 PF01098 Cell cycle protein vfu_A02934 PF02875 Mur ligase family, glutamate ligase domain vfu_A02934 PF08245 Mur ligase middle domain vfu_A02935 PF00953 Glycosyl transferase family 4 vfu_A02935 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 vfu_A02936 PF02875 Mur ligase family, glutamate ligase domain vfu_A02936 PF01225 Mur ligase family, catalytic domain vfu_A02936 PF08245 Mur ligase middle domain vfu_A02937 PF01225 Mur ligase family, catalytic domain vfu_A02937 PF08245 Mur ligase middle domain vfu_A02937 PF02875 Mur ligase family, glutamate ligase domain vfu_A02938 PF00905 Penicillin binding protein transpeptidase domain vfu_A02938 PF03717 Penicillin-binding Protein dimerisation domain vfu_A02939 PF04999 Cell division protein FtsL vfu_A02940 PF01795 MraW methylase family vfu_A02941 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases vfu_A02942 PF04348 LppC putative lipoprotein vfu_A02943 PF02021 Uncharacterised protein family UPF0102 vfu_A02944 PF13580 SIS domain vfu_A02945 PF04972 BON domain vfu_A02946 PF04386 Stringent starvation protein B vfu_A02947 PF02798 Glutathione S-transferase, N-terminal domain vfu_A02947 PF00043 Glutathione S-transferase, C-terminal domain vfu_A02948 PF02167 Cytochrome C1 family vfu_A02949 PF00032 Cytochrome b(C-terminal)/b6/petD vfu_A02949 PF00033 Cytochrome b/b6/petB vfu_A02950 PF00355 Rieske [2Fe-2S] domain vfu_A02950 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal vfu_A02951 PF00380 Ribosomal protein S9/S16 vfu_A02952 PF00572 Ribosomal protein L13 vfu_A02953 PF03969 AFG1-like ATPase vfu_A02954 PF06295 Protein of unknown function (DUF1043) vfu_A02955 PF00595 PDZ domain vfu_A02956 PF13180 PDZ domain vfu_A02957 PF01245 Ribosomal protein L19 vfu_A02959 PF01782 RimM N-terminal domain vfu_A02959 PF05239 PRC-barrel domain vfu_A02960 PF00886 Ribosomal protein S16 vfu_A02961 PF00448 SRP54-type protein, GTPase domain vfu_A02961 PF02978 Signal peptide binding domain vfu_A02961 PF02881 SRP54-type protein, helical bundle domain vfu_A02963 PF01578 Cytochrome C assembly protein vfu_A02964 PF03471 Transporter associated domain vfu_A02964 PF01595 Cyclin M transmembrane N-terminal domain vfu_A02964 PF00571 CBS domain vfu_A02965 PF02664 S-Ribosylhomocysteinase (LuxS) vfu_A02967 PF04262 Glutamate-cysteine ligase vfu_A02968 PF00675 Insulinase (Peptidase family M16) vfu_A02968 PF05193 Peptidase M16 inactive domain vfu_A02969 PF09335 SNARE associated Golgi protein vfu_A02970 PF08240 Alcohol dehydrogenase GroES-like domain vfu_A02970 PF00107 Zinc-binding dehydrogenase vfu_A02971 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit vfu_A02972 PF00364 Biotin-requiring enzyme vfu_A02972 PF02436 Conserved carboxylase domain vfu_A02972 PF00682 HMGL-like vfu_A02973 PF04277 Oxaloacetate decarboxylase, gamma chain vfu_A02975 PF02599 Global regulator protein family vfu_A02976 PF01842 ACT domain vfu_A02976 PF00696 Amino acid kinase family vfu_A02976 PF13840 ACT domain vfu_A02977 PF02272 DHHA1 domain vfu_A02977 PF01411 tRNA synthetases class II (A) vfu_A02977 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain vfu_A02978 PF02631 RecX family vfu_A02979 PF00154 recA bacterial DNA recombination protein vfu_A02980 PF02464 Competence-damaged protein vfu_A02981 PF05190 MutS family domain IV vfu_A02981 PF05192 MutS domain III vfu_A02981 PF00488 MutS domain V vfu_A02981 PF05188 MutS domain II vfu_A02981 PF01624 MutS domain I vfu_A02982 PF00140 Sigma-70 factor, region 1.2 vfu_A02982 PF04542 Sigma-70 region 2 vfu_A02982 PF04539 Sigma-70 region 3 vfu_A02982 PF04545 Sigma-70, region 4 vfu_A02983 PF01476 LysM domain vfu_A02983 PF01551 Peptidase family M23 vfu_A02985 PF01975 Survival protein SurE vfu_A02986 PF01142 tRNA pseudouridine synthase D (TruD) vfu_A02987 PF02542 YgbB family vfu_A02988 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase vfu_A02989 PF04977 Septum formation initiator vfu_A02990 PF02673 Bacitracin resistance protein BacA vfu_A02991 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) vfu_A02992 PF02152 Dihydroneopterin aldolase vfu_A02993 PF02660 Glycerol-3-phosphate acyltransferase vfu_A02994 PF00364 Biotin-requiring enzyme vfu_A02994 PF00561 alpha/beta hydrolase fold vfu_A02995 PF00814 Glycoprotease family vfu_A02996 PF01165 Ribosomal protein S21 vfu_A02997 PF09424 Yqey-like protein vfu_A02998 PF10410 DnaB-helicase binding domain of primase vfu_A02998 PF01807 CHC2 zinc finger vfu_A02998 PF08278 DNA primase DnaG DnaB-binding vfu_A02998 PF08275 DNA primase catalytic core, N-terminal domain vfu_A02999 PF00140 Sigma-70 factor, region 1.2 vfu_A02999 PF03979 Sigma-70 factor, region 1.1 vfu_A02999 PF04546 Sigma-70, non-essential region vfu_A02999 PF04545 Sigma-70, region 4 vfu_A02999 PF04539 Sigma-70 region 3 vfu_A02999 PF04542 Sigma-70 region 2 vfu_A03002 PF00589 Phage integrase family vfu_A03002 PF02899 Phage integrase, N-terminal SAM-like domain vfu_A03013 PF08220 DeoR-like helix-turn-helix domain vfu_A03013 PF13280 WYL domain vfu_A03015 PF00155 Aminotransferase class I and II vfu_A03016 PF00367 phosphotransferase system, EIIB vfu_A03016 PF02378 Phosphotransferase system, EIIC vfu_A03017 PF00356 Bacterial regulatory proteins, lacI family vfu_A03017 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family vfu_A03019 PF01769 Divalent cation transporter vfu_A03019 PF00571 CBS domain vfu_A03019 PF03448 MgtE intracellular N domain vfu_A03023 PF01380 SIS domain vfu_A03024 PF00455 DeoR C terminal sensor domain vfu_A03024 PF08220 DeoR-like helix-turn-helix domain vfu_A03026 PF00224 Pyruvate kinase, barrel domain vfu_A03026 PF02887 Pyruvate kinase, alpha/beta domain vfu_A03028 PF17158 Membrane-associated sensor, integral membrane domain vfu_A03028 PF00990 Diguanylate cyclase, GGDEF domain vfu_A03031 PF03466 LysR substrate binding domain vfu_A03031 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A03032 PF01810 LysE type translocator vfu_A03034 PF00924 Mechanosensitive ion channel vfu_A03034 PF05552 Conserved TM helix vfu_A03035 PF01116 Fructose-bisphosphate aldolase class-II vfu_A03036 PF00162 Phosphoglycerate kinase vfu_A03037 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain vfu_A03037 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain vfu_A03038 PF00593 TonB dependent receptor vfu_A03038 PF07715 TonB-dependent Receptor Plug Domain vfu_A03039 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_A03039 PF03466 LysR substrate binding domain vfu_A03040 PF02780 Transketolase, C-terminal domain vfu_A03040 PF02779 Transketolase, pyrimidine binding domain vfu_A03040 PF00456 Transketolase, thiamine diphosphate binding domain vfu_A03041 PF02773 S-adenosylmethionine synthetase, C-terminal domain vfu_A03041 PF02772 S-adenosylmethionine synthetase, central domain vfu_A03041 PF00438 S-adenosylmethionine synthetase, N-terminal domain vfu_A03043 PF17283 SprT-like zinc ribbon domain vfu_A03043 PF10263 SprT-like family vfu_A03044 PF04231 Endonuclease I vfu_A03045 PF04452 RNA methyltransferase vfu_A03046 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain vfu_A03046 PF02951 Prokaryotic glutathione synthetase, N-terminal domain vfu_A03047 PF02622 Uncharacterized ACR, COG1678 vfu_A03048 PF03652 Holliday junction resolvase vfu_A03049 PF00437 Type II/IV secretion system protein vfu_A03050 PF00437 Type II/IV secretion system protein vfu_A03051 PF01168 Alanine racemase, N-terminal domain vfu_A03052 PF03807 NADP oxidoreductase coenzyme F420-dependent vfu_A03052 PF14748 Pyrroline-5-carboxylate reductase dimerisation vfu_A03053 PF02325 YGGT family vfu_A03054 PF02594 Uncharacterised ACR, YggU family COG1872 vfu_A03056 PF01725 Ham1 family vfu_A03057 PF04055 Radical SAM superfamily vfu_A03057 PF06969 HemN C-terminal domain vfu_A03058 PF04960 Glutaminase vfu_A03059 PF02390 Putative methyltransferase vfu_A03060 PF00730 HhH-GPD superfamily base excision DNA repair protein vfu_A03060 PF14815 NUDIX domain vfu_A03065 PF04362 Bacterial Fe(2+) trafficking vfu_A03066 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain vfu_A03066 PF01464 Transglycosylase SLT domain vfu_A03068 PF00226 DnaJ domain vfu_A03068 PF05099 Tellurite resistance protein TerB vfu_A03069 PF04453 LPS transport system D vfu_A03069 PF03968 OstA-like protein vfu_A03070 PF09312 SurA N-terminal domain vfu_A03071 PF04166 Pyridoxal phosphate biosynthetic protein PdxA vfu_A03072 PF00398 Ribosomal RNA adenine dimethylase vfu_A03073 PF04379 ApaG domain vfu_A03074 PF00149 Calcineurin-like phosphoesterase vfu_A03075 PF00186 Dihydrofolate reductase vfu_A03076 PF12821 Threonine/Serine exporter, ThrE vfu_A03077 PF06738 Putative threonine/serine exporter vfu_A03078 PF01018 GTP1/OBG vfu_A03078 PF01926 50S ribosome-binding GTPase vfu_A03079 PF01016 Ribosomal L27 protein vfu_A03080 PF00829 Ribosomal prokaryotic L21 protein vfu_A03081 PF00348 Polyprenyl synthetase vfu_A03082 PF13520 Amino acid permease vfu_A03084 PF00056 lactate/malate dehydrogenase, NAD binding domain vfu_A03084 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain vfu_A03089 PF00582 Universal stress protein family vfu_A03093 PF06877 Regulator of ribonuclease activity B vfu_A03094 PF01523 Putative modulator of DNA gyrase vfu_A03095 PF00795 Carbon-nitrogen hydrolase vfu_A03096 PF13116 Protein of unknown function vfu_A03096 PF13502 AsmA-like C-terminal region vfu_A03097 PF10150 Ribonuclease E/G family vfu_A03097 PF00575 S1 RNA binding domain vfu_A03098 PF02545 Maf-like protein vfu_A03099 PF04093 rod shape-determining protein MreD vfu_A03100 PF04085 rod shape-determining protein MreC vfu_A03108 PF00114 Pilin (bacterial filament) vfu_A03108 PF07963 Prokaryotic N-terminal methylation motif vfu_A03109 PF07963 Prokaryotic N-terminal methylation motif vfu_A03109 PF00114 Pilin (bacterial filament) vfu_A03111 PF00482 Type II secretion system (T2SS), protein F vfu_A03112 PF00437 Type II/IV secretion system protein vfu_A03112 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain vfu_A03114 PF01471 Putative peptidoglycan binding domain vfu_A03114 PF13401 AAA domain vfu_A03115 PF00263 Bacterial type II and III secretion system protein vfu_A03115 PF03958 Bacterial type II/III secretion system short domain vfu_A03119 PF00563 EAL domain vfu_A03119 PF17157 Gammaproteobacterial periplasmic sensor domain vfu_A03119 PF00990 Diguanylate cyclase, GGDEF domain vfu_A03120 PF00436 Single-strand binding protein family vfu_A03121 PF00196 Bacterial regulatory proteins, luxR family vfu_A03122 PF00483 Nucleotidyl transferase vfu_A03123 PF00005 ABC transporter vfu_A03123 PF17760 UvrA interaction domain vfu_A03123 PF17755 UvrA DNA-binding domain vfu_A03125 PF00266 Aminotransferase class-V vfu_A03126 PF00696 Amino acid kinase family vfu_A03126 PF01842 ACT domain vfu_A03127 PF02574 Homocysteine S-methyltransferase vfu_A03127 PF00809 Pterin binding enzyme vfu_A03127 PF02965 Vitamin B12 dependent methionine synthase, activation domain vfu_A03127 PF02607 B12 binding domain vfu_A03127 PF02310 B12 binding domain vfu_A03128 PF00999 Sodium/hydrogen exchanger family vfu_A03133 PF01507 Phosphoadenosine phosphosulfate reductase family vfu_A03134 PF01077 Nitrite and sulphite reductase 4Fe-4S domain vfu_A03134 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain vfu_A03135 PF00667 FAD binding domain vfu_A03135 PF00258 Flavodoxin vfu_A03135 PF00175 Oxidoreductase NAD-binding domain vfu_A03139 PF01207 Dihydrouridine synthase (Dus) vfu_A03140 PF01475 Ferric uptake regulator family vfu_A03142 PF00342 Phosphoglucose isomerase vfu_A03143 PF00342 Phosphoglucose isomerase vfu_A03145 PF01894 Uncharacterised protein family UPF0047 vfu_A03146 PF01168 Alanine racemase, N-terminal domain vfu_A03146 PF00842 Alanine racemase, C-terminal domain vfu_A03147 PF03796 DnaB-like helicase C terminal domain vfu_A03147 PF00772 DnaB-like helicase N terminal domain vfu_A03149 PF03948 Ribosomal protein L9, C-terminal domain vfu_A03149 PF01281 Ribosomal protein L9, N-terminal domain vfu_A03150 PF01084 Ribosomal protein S18 vfu_A03151 PF00436 Single-strand binding protein family vfu_A03152 PF01250 Ribosomal protein S6 vfu_A03153 PF00210 Ferritin-like domain vfu_A03154 PF04324 BFD-like [2Fe-2S] binding domain vfu_A03155 PF03143 Elongation factor Tu C-terminal domain vfu_A03155 PF03144 Elongation factor Tu domain 2 vfu_A03155 PF00009 Elongation factor Tu GTP binding domain vfu_B00009 PF05016 ParE toxin of type II toxin-antitoxin system, parDE vfu_B00012 PF00491 Arginase family vfu_B00014 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_B00015 PF00155 Aminotransferase class I and II vfu_B00015 PF00392 Bacterial regulatory proteins, gntR family vfu_B00016 PF02525 Flavodoxin-like fold vfu_B00017 PF00578 AhpC/TSA family vfu_B00018 PF02683 Cytochrome C biogenesis protein transmembrane region vfu_B00018 PF11412 Disulphide bond corrector protein DsbC vfu_B00020 PF00156 Phosphoribosyl transferase domain vfu_B00021 PF14602 Hexapeptide repeat of succinyl-transferase vfu_B00021 PF12464 Maltose acetyltransferase vfu_B00025 PF02470 MlaD protein vfu_B00026 PF04403 Paraquat-inducible protein A vfu_B00027 PF00501 AMP-binding enzyme vfu_B00027 PF13193 AMP-binding enzyme C-terminal domain vfu_B00028 PF03466 LysR substrate binding domain vfu_B00028 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00029 PF00171 Aldehyde dehydrogenase family vfu_B00030 PF03480 Bacterial extracellular solute-binding protein, family 7 vfu_B00031 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component vfu_B00033 PF00202 Aminotransferase class-III vfu_B00035 PF03466 LysR substrate binding domain vfu_B00035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00036 PF01575 MaoC like domain vfu_B00037 PF12849 PBP superfamily domain vfu_B00039 PF00773 RNB domain vfu_B00039 PF08206 Ribonuclease B OB domain vfu_B00039 PF00575 S1 RNA binding domain vfu_B00040 PF00271 Helicase conserved C-terminal domain vfu_B00040 PF00270 DEAD/DEAH box helicase vfu_B00040 PF03880 DbpA RNA binding domain vfu_B00041 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain vfu_B00041 PF02824 TGS domain vfu_B00041 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) vfu_B00041 PF03129 Anticodon binding domain vfu_B00042 PF05198 Translation initiation factor IF-3, N-terminal domain vfu_B00042 PF00707 Translation initiation factor IF-3, C-terminal domain vfu_B00043 PF01632 Ribosomal protein L35 vfu_B00044 PF00453 Ribosomal protein L20 vfu_B00045 PF03239 Iron permease FTR1 family vfu_B00046 PF13473 Cupredoxin-like domain vfu_B00047 PF09905 DNA-binding protein VF530 vfu_B00055 PF13411 MerR HTH family regulatory protein vfu_B00056 PF02627 Carboxymuconolactone decarboxylase family vfu_B00058 PF00892 EamA-like transporter family vfu_B00059 PF00462 Glutaredoxin vfu_B00059 PF08534 Redoxin vfu_B00061 PF13649 Methyltransferase domain vfu_B00067 PF00583 Acetyltransferase (GNAT) family vfu_B00068 PF01928 CYTH domain vfu_B00071 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily vfu_B00076 PF02272 DHHA1 domain vfu_B00076 PF01411 tRNA synthetases class II (A) vfu_B00076 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain vfu_B00077 PF06942 GlpM protein vfu_B00078 PF00293 NUDIX domain vfu_B00079 PF01810 LysE type translocator vfu_B00081 PF00583 Acetyltransferase (GNAT) family vfu_B00083 PF00857 Isochorismatase family vfu_B00086 PF01810 LysE type translocator vfu_B00088 PF01596 O-methyltransferase vfu_B00089 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain vfu_B00089 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain vfu_B00090 PF00440 Bacterial regulatory proteins, tetR family vfu_B00093 PF03466 LysR substrate binding domain vfu_B00093 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00095 PF00456 Transketolase, thiamine diphosphate binding domain vfu_B00095 PF02780 Transketolase, C-terminal domain vfu_B00095 PF02779 Transketolase, pyrimidine binding domain vfu_B00096 PF00923 Transaldolase/Fructose-6-phosphate aldolase vfu_B00098 PF00581 Rhodanese-like domain vfu_B00099 PF00899 ThiF family vfu_B00100 PF03453 MoeA N-terminal region (domain I and II) vfu_B00100 PF03454 MoeA C-terminal region (domain IV) vfu_B00100 PF00994 Probable molybdopterin binding domain vfu_B00101 PF01227 GTP cyclohydrolase I vfu_B00102 PF13520 Amino acid permease vfu_B00103 PF05985 Ethanolamine ammonia-lyase light chain (EutC) vfu_B00104 PF06751 Ethanolamine ammonia lyase large subunit (EutB) vfu_B00105 PF12833 Helix-turn-helix domain vfu_B00106 PF01625 Peptide methionine sulfoxide reductase vfu_B00106 PF01641 SelR domain vfu_B00107 PF01268 Formate--tetrahydrofolate ligase vfu_B00110 PF03466 LysR substrate binding domain vfu_B00110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00111 PF13419 Haloacid dehalogenase-like hydrolase vfu_B00112 PF14760 Rnk N-terminus vfu_B00112 PF01272 Transcription elongation factor, GreA/GreB, C-term vfu_B00114 PF13419 Haloacid dehalogenase-like hydrolase vfu_B00116 PF00266 Aminotransferase class-V vfu_B00118 PF00005 ABC transporter vfu_B00119 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00120 PF07702 UTRA domain vfu_B00120 PF00392 Bacterial regulatory proteins, gntR family vfu_B00122 PF18027 Cytosolic carboxypeptidase N-terminal domain vfu_B00122 PF00246 Zinc carboxypeptidase vfu_B00127 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vfu_B00128 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00129 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00129 PF12911 N-terminal TM domain of oligopeptide transport permease C vfu_B00130 PF00005 ABC transporter vfu_B00130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vfu_B00131 PF00132 Bacterial transferase hexapeptide (six repeats) vfu_B00131 PF12804 MobA-like NTP transferase domain vfu_B00131 PF03479 Plants and Prokaryotes Conserved (PCC) domain vfu_B00134 PF00512 His Kinase A (phospho-acceptor) domain vfu_B00134 PF09456 RcsC Alpha-Beta-Loop (ABL) vfu_B00134 PF00072 Response regulator receiver domain vfu_B00134 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B00135 PF00563 EAL domain vfu_B00135 PF00360 Phytochrome region vfu_B00135 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00135 PF01590 GAF domain vfu_B00136 PF00196 Bacterial regulatory proteins, luxR family vfu_B00136 PF00072 Response regulator receiver domain vfu_B00138 PF17155 Gammaproteobacterial periplasmic sensor domain vfu_B00138 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00142 PF02743 Cache domain vfu_B00142 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00142 PF00672 HAMP domain vfu_B00143 PF05525 Branched-chain amino acid transport protein vfu_B00146 PF08774 VRR-NUC domain vfu_B00146 PF18081 Fanconi anemia-associated nuclease SAP domain vfu_B00149 PF06463 Molybdenum Cofactor Synthesis C vfu_B00149 PF04055 Radical SAM superfamily vfu_B00152 PF02129 X-Pro dipeptidyl-peptidase (S15 family) vfu_B00153 PF00486 Transcriptional regulatory protein, C terminal vfu_B00162 PF00155 Aminotransferase class I and II vfu_B00163 PF12833 Helix-turn-helix domain vfu_B00163 PF01497 Periplasmic binding protein vfu_B00164 PF01641 SelR domain vfu_B00164 PF01625 Peptide methionine sulfoxide reductase vfu_B00165 PF00860 Permease family vfu_B00168 PF01177 Asp/Glu/Hydantoin racemase vfu_B00172 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00173 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00174 PF00005 ABC transporter vfu_B00176 PF13593 SBF-like CPA transporter family (DUF4137) vfu_B00177 PF01425 Amidase vfu_B00179 PF00266 Aminotransferase class-V vfu_B00180 PF07687 Peptidase dimerisation domain vfu_B00180 PF01546 Peptidase family M20/M25/M40 vfu_B00184 PF01979 Amidohydrolase family vfu_B00185 PF00576 HIUase/Transthyretin family vfu_B00186 PF01014 Uricase vfu_B00186 PF09349 OHCU decarboxylase vfu_B00189 PF01799 [2Fe-2S] binding domain vfu_B00189 PF00111 2Fe-2S iron-sulfur cluster binding domain vfu_B00190 PF02608 ABC transporter substrate-binding protein PnrA-like vfu_B00193 PF00005 ABC transporter vfu_B00194 PF08362 YcdC-like protein, C-terminal region vfu_B00194 PF00440 Bacterial regulatory proteins, tetR family vfu_B00196 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00196 PF08448 PAS fold vfu_B00198 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00198 PF17156 Gammaproteobacterial periplasmic sensor domain vfu_B00201 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch vfu_B00201 PF05222 Alanine dehydrogenase/PNT, N-terminal domain vfu_B00201 PF01262 Alanine dehydrogenase/PNT, C-terminal domain vfu_B00202 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch vfu_B00202 PF01262 Alanine dehydrogenase/PNT, C-terminal domain vfu_B00202 PF05222 Alanine dehydrogenase/PNT, N-terminal domain vfu_B00203 PF02233 NAD(P) transhydrogenase beta subunit vfu_B00205 PF00486 Transcriptional regulatory protein, C terminal vfu_B00205 PF00072 Response regulator receiver domain vfu_B00208 PF03701 Uncharacterised protein family (UPF0181) vfu_B00224 PF01253 Translation initiation factor SUI1 vfu_B00227 PF01820 D-ala D-ala ligase N-terminus vfu_B00227 PF07478 D-ala D-ala ligase C-terminus vfu_B00229 PF13380 CoA binding domain vfu_B00229 PF13607 Succinyl-CoA ligase like flavodoxin domain vfu_B00229 PF00583 Acetyltransferase (GNAT) family vfu_B00230 PF03466 LysR substrate binding domain vfu_B00230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00231 PF00593 TonB dependent receptor vfu_B00231 PF07715 TonB-dependent Receptor Plug Domain vfu_B00233 PF12793 Sugar transport-related sRNA regulator N-term vfu_B00233 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vfu_B00235 PF03061 Thioesterase superfamily vfu_B00236 PF01435 Peptidase family M48 vfu_B00237 PF03831 PhnA domain vfu_B00237 PF08274 PhnA Zinc-Ribbon vfu_B00239 PF03741 Integral membrane protein TerC family vfu_B00241 PF02872 5'-nucleotidase, C-terminal domain vfu_B00241 PF00149 Calcineurin-like phosphoesterase vfu_B00242 PF11398 Protein of unknown function (DUF2813) vfu_B00243 PF06496 Protein of unknown function (DUF1097) vfu_B00244 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00244 PF03466 LysR substrate binding domain vfu_B00245 PF01226 Formate/nitrite transporter vfu_B00246 PF04264 YceI-like domain vfu_B00247 PF01292 Prokaryotic cytochrome b561 vfu_B00253 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00253 PF00563 EAL domain vfu_B00253 PF13426 PAS domain vfu_B00256 PF00384 Molybdopterin oxidoreductase vfu_B00257 PF02634 FdhD/NarQ family vfu_B00258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B00258 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) vfu_B00258 PF00512 His Kinase A (phospho-acceptor) domain vfu_B00258 PF01627 Hpt domain vfu_B00258 PF00672 HAMP domain vfu_B00258 PF00072 Response regulator receiver domain vfu_B00259 PF00072 Response regulator receiver domain vfu_B00261 PF12833 Helix-turn-helix domain vfu_B00261 PF02311 AraC-like ligand binding domain vfu_B00262 PF08240 Alcohol dehydrogenase GroES-like domain vfu_B00262 PF00107 Zinc-binding dehydrogenase vfu_B00264 PF01047 MarR family vfu_B00265 PF01926 50S ribosome-binding GTPase vfu_B00266 PF07683 Cobalamin synthesis protein cobW C-terminal domain vfu_B00266 PF02492 CobW/HypB/UreG, nucleotide-binding domain vfu_B00267 PF00654 Voltage gated chloride channel vfu_B00269 PF00155 Aminotransferase class I and II vfu_B00270 PF00072 Response regulator receiver domain vfu_B00270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B00271 PF13476 AAA domain vfu_B00272 PF12320 Type 5 capsule protein repressor C-terminal domain vfu_B00272 PF00149 Calcineurin-like phosphoesterase vfu_B00273 PF00356 Bacterial regulatory proteins, lacI family vfu_B00273 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family vfu_B00275 PF00381 PTS HPr component phosphorylation site vfu_B00275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 vfu_B00276 PF00294 pfkB family carbohydrate kinase vfu_B00277 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit vfu_B00277 PF02378 Phosphotransferase system, EIIC vfu_B00278 PF08443 RimK-like ATP-grasp domain vfu_B00278 PF18030 RimK PreATP-grasp domain vfu_B00279 PF00155 Aminotransferase class I and II vfu_B00281 PF13597 Anaerobic ribonucleoside-triphosphate reductase vfu_B00281 PF03477 ATP cone domain vfu_B00283 PF00873 AcrB/AcrD/AcrF family vfu_B00284 PF00529 HlyD membrane-fusion protein of T1SS vfu_B00284 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_B00286 PF04143 Sulphur transport vfu_B00289 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_B00289 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain vfu_B00290 PF13673 Acetyltransferase (GNAT) domain vfu_B00292 PF03466 LysR substrate binding domain vfu_B00292 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00293 PF01810 LysE type translocator vfu_B00294 PF00486 Transcriptional regulatory protein, C terminal vfu_B00294 PF00072 Response regulator receiver domain vfu_B00296 PF16901 C-terminal domain of alpha-glycerophosphate oxidase vfu_B00296 PF01266 FAD dependent oxidoreductase vfu_B00297 PF08447 PAS fold vfu_B00297 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00299 PF05736 OprF membrane domain vfu_B00299 PF00691 OmpA family vfu_B00301 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase vfu_B00301 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase vfu_B00302 PF13419 Haloacid dehalogenase-like hydrolase vfu_B00303 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00303 PF12729 Four helix bundle sensory module for signal transduction vfu_B00303 PF00672 HAMP domain vfu_B00304 PF07690 Major Facilitator Superfamily vfu_B00307 PF03606 C4-dicarboxylate anaerobic carrier vfu_B00308 PF00072 Response regulator receiver domain vfu_B00308 PF00196 Bacterial regulatory proteins, luxR family vfu_B00309 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term vfu_B00309 PF07730 Histidine kinase vfu_B00309 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B00309 PF00672 HAMP domain vfu_B00312 PF04879 Molybdopterin oxidoreductase Fe4S4 domain vfu_B00312 PF01568 Molydopterin dinucleotide binding domain vfu_B00312 PF00384 Molybdopterin oxidoreductase vfu_B00313 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) vfu_B00314 PF03264 NapC/NirT cytochrome c family, N-terminal region vfu_B00316 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vfu_B00318 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus vfu_B00318 PF00561 alpha/beta hydrolase fold vfu_B00320 PF00108 Thiolase, N-terminal domain vfu_B00320 PF02803 Thiolase, C-terminal domain vfu_B00321 PF00106 short chain dehydrogenase vfu_B00323 PF07549 SecD/SecF GG Motif vfu_B00323 PF02355 Protein export membrane protein vfu_B00324 PF13721 SecD export protein N-terminal TM region vfu_B00324 PF07549 SecD/SecF GG Motif vfu_B00324 PF02355 Protein export membrane protein vfu_B00328 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00328 PF07694 5TMR of 5TMR-LYT vfu_B00329 PF00483 Nucleotidyl transferase vfu_B00330 PF00704 Glycosyl hydrolases family 18 vfu_B00330 PF06483 Chitinase C vfu_B00331 PF06719 AraC-type transcriptional regulator N-terminus vfu_B00331 PF12833 Helix-turn-helix domain vfu_B00332 PF00465 Iron-containing alcohol dehydrogenase vfu_B00334 PF01627 Hpt domain vfu_B00334 PF00072 Response regulator receiver domain vfu_B00334 PF00672 HAMP domain vfu_B00334 PF00512 His Kinase A (phospho-acceptor) domain vfu_B00334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B00335 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family vfu_B00336 PF02142 MGS-like domain vfu_B00337 PF00857 Isochorismatase family vfu_B00338 PF13361 UvrD-like helicase C-terminal domain vfu_B00338 PF12462 DNA helicase IV / RNA helicase N terminal vfu_B00338 PF00580 UvrD/REP helicase N-terminal domain vfu_B00343 PF00529 HlyD membrane-fusion protein of T1SS vfu_B00346 PF03412 Peptidase C39 family vfu_B00346 PF00664 ABC transporter transmembrane region vfu_B00346 PF00005 ABC transporter vfu_B00347 PF12805 FUSC-like inner membrane protein yccS vfu_B00351 PF00005 ABC transporter vfu_B00351 PF03459 TOBE domain vfu_B00352 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00354 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain vfu_B00354 PF07685 CobB/CobQ-like glutamine amidotransferase domain vfu_B00358 PF00072 Response regulator receiver domain vfu_B00358 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B00358 PF00512 His Kinase A (phospho-acceptor) domain vfu_B00358 PF09308 LuxQ, periplasmic vfu_B00359 PF13407 Periplasmic binding protein domain vfu_B00360 PF01541 GIY-YIG catalytic domain vfu_B00361 PF04337 Protein of unknown function, DUF480 vfu_B00363 PF04363 Protein of unknown function (DUF496) vfu_B00364 PF00589 Phage integrase family vfu_B00364 PF02899 Phage integrase, N-terminal SAM-like domain vfu_B00365 PF13614 AAA domain vfu_B00370 PF06892 Phage regulatory protein CII (CP76) vfu_B00375 PF05840 Bacteriophage replication gene A protein (GPA) vfu_B00392 PF02661 Fic/DOC family vfu_B00392 PF18543 Intracellular delivery domain vfu_B00401 PF04984 Phage tail sheath protein subtilisin-like domain vfu_B00401 PF17482 Phage tail sheath C-terminal domain vfu_B00409 PF10688 Bacterial inner membrane protein vfu_B00410 PF02782 FGGY family of carbohydrate kinases, C-terminal domain vfu_B00410 PF00370 FGGY family of carbohydrate kinases, N-terminal domain vfu_B00411 PF00230 Major intrinsic protein vfu_B00413 PF04324 BFD-like [2Fe-2S] binding domain vfu_B00413 PF01266 FAD dependent oxidoreductase vfu_B00414 PF00890 FAD binding domain vfu_B00415 PF13183 4Fe-4S dicluster domain vfu_B00415 PF02754 Cysteine-rich domain vfu_B00416 PF13183 4Fe-4S dicluster domain vfu_B00416 PF02754 Cysteine-rich domain vfu_B00419 PF00534 Glycosyl transferases group 1 vfu_B00419 PF13439 Glycosyltransferase Family 4 vfu_B00420 PF13439 Glycosyltransferase Family 4 vfu_B00420 PF00534 Glycosyl transferases group 1 vfu_B00426 PF02563 Polysaccharide biosynthesis/export protein vfu_B00426 PF18412 Outer-membrane lipoprotein Wza C-terminal domain vfu_B00426 PF10531 SLBB domain vfu_B00429 PF02397 Bacterial sugar transferase vfu_B00430 PF02397 Bacterial sugar transferase vfu_B00431 PF00873 AcrB/AcrD/AcrF family vfu_B00432 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_B00433 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal vfu_B00433 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III vfu_B00434 PF00085 Thioredoxin vfu_B00435 PF07690 Major Facilitator Superfamily vfu_B00436 PF11756 Nitrous oxide-stimulated promoter vfu_B00440 PF10414 Sirohaem synthase dimerisation region vfu_B00440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases vfu_B00440 PF14824 Sirohaem biosynthesis protein central vfu_B00442 PF13806 Rieske-like [2Fe-2S] domain vfu_B00443 PF18267 Rubredoxin NAD+ reductase C-terminal domain vfu_B00443 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_B00443 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain vfu_B00443 PF01077 Nitrite and sulphite reductase 4Fe-4S domain vfu_B00443 PF04324 BFD-like [2Fe-2S] binding domain vfu_B00447 PF02028 BCCT, betaine/carnitine/choline family transporter vfu_B00448 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00449 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00450 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00451 PF00497 Bacterial extracellular solute-binding proteins, family 3 vfu_B00452 PF00005 ABC transporter vfu_B00454 PF00593 TonB dependent receptor vfu_B00454 PF07715 TonB-dependent Receptor Plug Domain vfu_B00456 PF01032 FecCD transport family vfu_B00457 PF01497 Periplasmic binding protein vfu_B00458 PF00005 ABC transporter vfu_B00459 PF00672 HAMP domain vfu_B00459 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00460 PF00842 Alanine racemase, C-terminal domain vfu_B00460 PF01168 Alanine racemase, N-terminal domain vfu_B00461 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00461 PF03466 LysR substrate binding domain vfu_B00462 PF02028 BCCT, betaine/carnitine/choline family transporter vfu_B00464 PF00881 Nitroreductase family vfu_B00465 PF13419 Haloacid dehalogenase-like hydrolase vfu_B00466 PF07690 Major Facilitator Superfamily vfu_B00467 PF02782 FGGY family of carbohydrate kinases, C-terminal domain vfu_B00467 PF00370 FGGY family of carbohydrate kinases, N-terminal domain vfu_B00468 PF08125 Mannitol dehydrogenase C-terminal domain vfu_B00468 PF01232 Mannitol dehydrogenase Rossmann domain vfu_B00469 PF00325 Bacterial regulatory proteins, crp family vfu_B00469 PF04198 Putative sugar-binding domain vfu_B00471 PF03577 Peptidase family C69 vfu_B00472 PF02322 Cytochrome bd terminal oxidase subunit II vfu_B00473 PF01654 Cytochrome bd terminal oxidase subunit I vfu_B00474 PF00384 Molybdopterin oxidoreductase vfu_B00476 PF01062 Bestrophin, RFP-TM, chloride channel vfu_B00477 PF03466 LysR substrate binding domain vfu_B00477 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00478 PF02634 FdhD/NarQ family vfu_B00480 PF03466 LysR substrate binding domain vfu_B00480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00481 PF00296 Luciferase-like monooxygenase vfu_B00483 PF16200 C-terminal region of band_7 vfu_B00483 PF01145 SPFH domain / Band 7 family vfu_B00487 PF02311 AraC-like ligand binding domain vfu_B00487 PF12833 Helix-turn-helix domain vfu_B00489 PF00871 Acetokinase family vfu_B00491 PF00593 TonB dependent receptor vfu_B00491 PF07715 TonB-dependent Receptor Plug Domain vfu_B00492 PF12833 Helix-turn-helix domain vfu_B00493 PF00005 ABC transporter vfu_B00494 PF01032 FecCD transport family vfu_B00495 PF01032 FecCD transport family vfu_B00499 PF05547 Immune inhibitor A peptidase M6 vfu_B00499 PF00801 PKD domain vfu_B00500 PF03280 Proteobacterial lipase chaperone protein vfu_B00501 PF00561 alpha/beta hydrolase fold vfu_B00502 PF12729 Four helix bundle sensory module for signal transduction vfu_B00502 PF00672 HAMP domain vfu_B00502 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00503 PF13404 AsnC-type helix-turn-helix domain vfu_B00503 PF01037 Lrp/AsnC ligand binding domain vfu_B00507 PF07690 Major Facilitator Superfamily vfu_B00509 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00509 PF00672 HAMP domain vfu_B00512 PF02540 NAD synthase vfu_B00513 PF03605 Anaerobic c4-dicarboxylate membrane transporter vfu_B00514 PF00072 Response regulator receiver domain vfu_B00514 PF04397 LytTr DNA-binding domain vfu_B00515 PF07694 5TMR of 5TMR-LYT vfu_B00515 PF06580 Histidine kinase vfu_B00517 PF00248 Aldo/keto reductase family vfu_B00519 PF00128 Alpha amylase, catalytic domain vfu_B00520 PF04151 Bacterial pre-peptidase C-terminal domain vfu_B00520 PF02868 Thermolysin metallopeptidase, alpha-helical domain vfu_B00520 PF07504 Fungalysin/Thermolysin Propeptide Motif vfu_B00520 PF01447 Thermolysin metallopeptidase, catalytic domain vfu_B00520 PF03413 Peptidase propeptide and YPEB domain vfu_B00522 PF03922 OmpW family vfu_B00526 PF02013 Cellulose or protein binding domain vfu_B00526 PF00150 Cellulase (glycosyl hydrolase family 5) vfu_B00529 PF01238 Phosphomannose isomerase type I vfu_B00530 PF02743 Cache domain vfu_B00530 PF00672 HAMP domain vfu_B00530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00531 PF02264 LamB porin vfu_B00532 PF04041 beta-1,4-mannooligosaccharide phosphorylase vfu_B00533 PF04041 beta-1,4-mannooligosaccharide phosphorylase vfu_B00534 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II vfu_B00534 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain vfu_B00534 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III vfu_B00534 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I vfu_B00535 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family vfu_B00535 PF00356 Bacterial regulatory proteins, lacI family vfu_B00536 PF17912 MalK OB fold domain vfu_B00536 PF00005 ABC transporter vfu_B00539 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00540 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00542 PF01554 MatE vfu_B00544 PF08543 Phosphomethylpyrimidine kinase vfu_B00545 PF00005 ABC transporter vfu_B00546 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00547 PF09084 NMT1/THI5 like vfu_B00548 PF03070 TENA/THI-4/PQQC family vfu_B00549 PF02110 Hydroxyethylthiazole kinase family vfu_B00551 PF00664 ABC transporter transmembrane region vfu_B00551 PF00005 ABC transporter vfu_B00552 PF00005 ABC transporter vfu_B00552 PF00664 ABC transporter transmembrane region vfu_B00554 PF00563 EAL domain vfu_B00554 PF12792 CSS motif domain associated with EAL vfu_B00555 PF00912 Transglycosylase vfu_B00561 PF00313 'Cold-shock' DNA-binding domain vfu_B00562 PF08240 Alcohol dehydrogenase GroES-like domain vfu_B00562 PF00107 Zinc-binding dehydrogenase vfu_B00563 PF00155 Aminotransferase class I and II vfu_B00564 PF00171 Aldehyde dehydrogenase family vfu_B00565 PF00158 Sigma-54 interaction domain vfu_B00565 PF02954 Bacterial regulatory protein, Fis family vfu_B00565 PF01590 GAF domain vfu_B00567 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00567 PF03466 LysR substrate binding domain vfu_B00568 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily vfu_B00574 PF01966 HD domain vfu_B00575 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain vfu_B00575 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain vfu_B00576 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase vfu_B00577 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase vfu_B00577 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain vfu_B00580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00580 PF00672 HAMP domain vfu_B00580 PF02743 Cache domain vfu_B00581 PF03466 LysR substrate binding domain vfu_B00581 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00584 PF02310 B12 binding domain vfu_B00584 PF02607 B12 binding domain vfu_B00584 PF02965 Vitamin B12 dependent methionine synthase, activation domain vfu_B00584 PF00809 Pterin binding enzyme vfu_B00584 PF02574 Homocysteine S-methyltransferase vfu_B00585 PF13520 Amino acid permease vfu_B00588 PF02595 Glycerate kinase family vfu_B00589 PF02447 GntP family permease vfu_B00590 PF13556 PucR C-terminal helix-turn-helix domain vfu_B00590 PF05651 Putative sugar diacid recognition vfu_B00590 PF17853 GGDEF-like domain vfu_B00592 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain vfu_B00592 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain vfu_B00593 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vfu_B00593 PF12793 Sugar transport-related sRNA regulator N-term vfu_B00598 PF00072 Response regulator receiver domain vfu_B00598 PF00486 Transcriptional regulatory protein, C terminal vfu_B00605 PF00577 Outer membrane usher protein vfu_B00605 PF13953 PapC C-terminal domain vfu_B00605 PF13954 PapC N-terminal domain vfu_B00606 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain vfu_B00606 PF02753 Pili assembly chaperone PapD, C-terminal domain vfu_B00608 PF00691 OmpA family vfu_B00608 PF05736 OprF membrane domain vfu_B00609 PF04632 Fusaric acid resistance protein family vfu_B00610 PF00529 HlyD membrane-fusion protein of T1SS vfu_B00610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_B00614 PF07943 Penicillin-binding protein 5, C-terminal domain vfu_B00614 PF00768 D-alanyl-D-alanine carboxypeptidase vfu_B00615 PF00005 ABC transporter vfu_B00616 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00617 PF00497 Bacterial extracellular solute-binding proteins, family 3 vfu_B00618 PF01053 Cys/Met metabolism PLP-dependent enzyme vfu_B00619 PF01037 Lrp/AsnC ligand binding domain vfu_B00620 PF00491 Arginase family vfu_B00621 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain vfu_B00621 PF17944 Arginine decarboxylase C-terminal helical extension vfu_B00621 PF17810 Arginine decarboxylase helical bundle domain vfu_B00623 PF00571 CBS domain vfu_B00623 PF00005 ABC transporter vfu_B00624 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00625 PF04069 Substrate binding domain of ABC-type glycine betaine transport system vfu_B00627 PF02743 Cache domain vfu_B00627 PF00672 HAMP domain vfu_B00627 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00629 PF00571 CBS domain vfu_B00629 PF03448 MgtE intracellular N domain vfu_B00629 PF01769 Divalent cation transporter vfu_B00630 PF00166 Chaperonin 10 Kd subunit vfu_B00631 PF00118 TCP-1/cpn60 chaperonin family vfu_B00633 PF00490 Delta-aminolevulinic acid dehydratase vfu_B00634 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00634 PF03707 Bacterial signalling protein N terminal repeat vfu_B00634 PF00563 EAL domain vfu_B00635 PF11849 Domain of unknown function (DUF3369) vfu_B00637 PF03466 LysR substrate binding domain vfu_B00637 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00640 PF13840 ACT domain vfu_B00640 PF00696 Amino acid kinase family vfu_B00641 PF06339 Ectoine synthase vfu_B00642 PF00202 Aminotransferase class-III vfu_B00643 PF00583 Acetyltransferase (GNAT) family vfu_B00645 PF03741 Integral membrane protein TerC family vfu_B00648 PF01554 MatE vfu_B00649 PF01329 Pterin 4 alpha carbinolamine dehydratase vfu_B00650 PF00351 Biopterin-dependent aromatic amino acid hydroxylase vfu_B00651 PF00501 AMP-binding enzyme vfu_B00651 PF13193 AMP-binding enzyme C-terminal domain vfu_B00652 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00652 PF03466 LysR substrate binding domain vfu_B00653 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B00653 PF00512 His Kinase A (phospho-acceptor) domain vfu_B00653 PF08521 Two-component sensor kinase N-terminal vfu_B00654 PF00072 Response regulator receiver domain vfu_B00654 PF00486 Transcriptional regulatory protein, C terminal vfu_B00658 PF00501 AMP-binding enzyme vfu_B00661 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00661 PF03466 LysR substrate binding domain vfu_B00663 PF00478 IMP dehydrogenase / GMP reductase domain vfu_B00666 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain vfu_B00666 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain vfu_B00667 PF01256 Carbohydrate kinase vfu_B00667 PF03853 YjeF-related protein N-terminus vfu_B00668 PF00486 Transcriptional regulatory protein, C terminal vfu_B00668 PF00072 Response regulator receiver domain vfu_B00669 PF00072 Response regulator receiver domain vfu_B00669 PF00196 Bacterial regulatory proteins, luxR family vfu_B00670 PF00072 Response regulator receiver domain vfu_B00670 PF00989 PAS fold vfu_B00670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B00670 PF01627 Hpt domain vfu_B00670 PF00497 Bacterial extracellular solute-binding proteins, family 3 vfu_B00670 PF00512 His Kinase A (phospho-acceptor) domain vfu_B00671 PF00563 EAL domain vfu_B00671 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00671 PF03707 Bacterial signalling protein N terminal repeat vfu_B00673 PF00486 Transcriptional regulatory protein, C terminal vfu_B00673 PF00072 Response regulator receiver domain vfu_B00678 PF03889 Alternative ribosome-rescue factor A vfu_B00679 PF00313 'Cold-shock' DNA-binding domain vfu_B00680 PF07152 YaeQ protein vfu_B00681 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00682 PF00042 Globin vfu_B00682 PF00175 Oxidoreductase NAD-binding domain vfu_B00682 PF00970 Oxidoreductase FAD-binding domain vfu_B00683 PF00158 Sigma-54 interaction domain vfu_B00683 PF01590 GAF domain vfu_B00686 PF07687 Peptidase dimerisation domain vfu_B00686 PF01546 Peptidase family M20/M25/M40 vfu_B00687 PF01773 Na+ dependent nucleoside transporter N-terminus vfu_B00687 PF07662 Na+ dependent nucleoside transporter C-terminus vfu_B00687 PF07670 Nucleoside recognition vfu_B00689 PF00128 Alpha amylase, catalytic domain vfu_B00692 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00692 PF12729 Four helix bundle sensory module for signal transduction vfu_B00692 PF00672 HAMP domain vfu_B00693 PF07726 ATPase family associated with various cellular activities (AAA) vfu_B00693 PF17863 AAA lid domain vfu_B00694 PF01882 Protein of unknown function DUF58 vfu_B00697 PF07584 Aerotolerance regulator N-terminal vfu_B00697 PF13519 von Willebrand factor type A domain vfu_B00700 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00700 PF00563 EAL domain vfu_B00704 PF00512 His Kinase A (phospho-acceptor) domain vfu_B00704 PF01627 Hpt domain vfu_B00704 PF00672 HAMP domain vfu_B00704 PF00072 Response regulator receiver domain vfu_B00704 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) vfu_B00704 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B00705 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00705 PF00072 Response regulator receiver domain vfu_B00706 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family vfu_B00707 PF04996 Succinylarginine dihydrolase vfu_B00708 PF00171 Aldehyde dehydrogenase family vfu_B00709 PF04958 Arginine N-succinyltransferase beta subunit vfu_B00710 PF04958 Arginine N-succinyltransferase beta subunit vfu_B00711 PF00202 Aminotransferase class-III vfu_B00712 PF12833 Helix-turn-helix domain vfu_B00713 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain vfu_B00713 PF13378 Enolase C-terminal domain-like vfu_B00715 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00716 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B00717 PF00497 Bacterial extracellular solute-binding proteins, family 3 vfu_B00718 PF03466 LysR substrate binding domain vfu_B00718 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00721 PF00582 Universal stress protein family vfu_B00722 PF00472 RF-1 domain vfu_B00723 PF12843 Putative quorum-sensing-regulated virulence factor vfu_B00725 PF01266 FAD dependent oxidoreductase vfu_B00729 PF00158 Sigma-54 interaction domain vfu_B00729 PF02954 Bacterial regulatory protein, Fis family vfu_B00729 PF00072 Response regulator receiver domain vfu_B00730 PF00196 Bacterial regulatory proteins, luxR family vfu_B00731 PF01037 Lrp/AsnC ligand binding domain vfu_B00732 PF00892 EamA-like transporter family vfu_B00733 PF00440 Bacterial regulatory proteins, tetR family vfu_B00735 PF08502 LeuA allosteric (dimerisation) domain vfu_B00735 PF00682 HMGL-like vfu_B00737 PF00117 Glutamine amidotransferase class-I vfu_B00738 PF12852 Cupin vfu_B00738 PF12833 Helix-turn-helix domain vfu_B00739 PF03466 LysR substrate binding domain vfu_B00739 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00740 PF00005 ABC transporter vfu_B00740 PF03412 Peptidase C39 family vfu_B00740 PF00664 ABC transporter transmembrane region vfu_B00744 PF00535 Glycosyl transferase family 2 vfu_B00746 PF12852 Cupin vfu_B00746 PF12833 Helix-turn-helix domain vfu_B00747 PF01042 Endoribonuclease L-PSP vfu_B00759 PF01584 CheW-like domain vfu_B00759 PF00072 Response regulator receiver domain vfu_B00760 PF04237 YjbR vfu_B00761 PF01047 MarR family vfu_B00763 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00767 PF00563 EAL domain vfu_B00767 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00767 PF03707 Bacterial signalling protein N terminal repeat vfu_B00771 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00771 PF03466 LysR substrate binding domain vfu_B00772 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00772 PF00563 EAL domain vfu_B00772 PF03707 Bacterial signalling protein N terminal repeat vfu_B00774 PF02678 Pirin vfu_B00774 PF05726 Pirin C-terminal cupin domain vfu_B00775 PF00486 Transcriptional regulatory protein, C terminal vfu_B00775 PF00072 Response regulator receiver domain vfu_B00777 PF00672 HAMP domain vfu_B00777 PF00512 His Kinase A (phospho-acceptor) domain vfu_B00777 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B00786 PF17871 AAA lid domain vfu_B00786 PF10431 C-terminal, D2-small domain, of ClpB protein vfu_B00786 PF07724 AAA domain (Cdc48 subfamily) vfu_B00786 PF00004 ATPase family associated with various cellular activities (AAA) vfu_B00787 PF17871 AAA lid domain vfu_B00787 PF07724 AAA domain (Cdc48 subfamily) vfu_B00787 PF00004 ATPase family associated with various cellular activities (AAA) vfu_B00787 PF10431 C-terminal, D2-small domain, of ClpB protein vfu_B00799 PF04717 Type VI secretion system, phage-baseplate injector vfu_B00799 PF16671 Actin cross-linking domain vfu_B00801 PF07690 Major Facilitator Superfamily vfu_B00803 PF06865 Pyrimidine/purine nucleoside phosphorylase vfu_B00805 PF02386 Cation transport protein vfu_B00806 PF02080 TrkA-C domain vfu_B00806 PF02254 TrkA-N domain vfu_B00807 PF00924 Mechanosensitive ion channel vfu_B00808 PF07690 Major Facilitator Superfamily vfu_B00809 PF00672 HAMP domain vfu_B00809 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00809 PF17200 Single Cache domain 2 vfu_B00810 PF13654 AAA domain vfu_B00810 PF05362 Lon protease (S16) C-terminal proteolytic domain vfu_B00812 PF00005 ABC transporter vfu_B00812 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vfu_B00813 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00813 PF03466 LysR substrate binding domain vfu_B00814 PF02652 L-lactate permease vfu_B00815 PF01070 FMN-dependent dehydrogenase vfu_B00817 PF03618 Kinase/pyrophosphorylase vfu_B00818 PF00391 PEP-utilising enzyme, mobile domain vfu_B00818 PF02896 PEP-utilising enzyme, TIM barrel domain vfu_B00818 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain vfu_B00820 PF02627 Carboxymuconolactone decarboxylase family vfu_B00821 PF00291 Pyridoxal-phosphate dependent enzyme vfu_B00824 PF05656 Protein of unknown function (DUF805) vfu_B00828 PF01844 HNH endonuclease vfu_B00830 PF13673 Acetyltransferase (GNAT) domain vfu_B00830 PF13302 Acetyltransferase (GNAT) domain vfu_B00830 PF00958 GMP synthase C terminal domain vfu_B00830 PF03352 Methyladenine glycosylase vfu_B00830 PF00117 Glutamine amidotransferase class-I vfu_B00831 PF00557 Metallopeptidase family M24 vfu_B00834 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00834 PF03466 LysR substrate binding domain vfu_B00837 PF00005 ABC transporter vfu_B00838 PF01032 FecCD transport family vfu_B00839 PF01032 FecCD transport family vfu_B00840 PF01497 Periplasmic binding protein vfu_B00841 PF07715 TonB-dependent Receptor Plug Domain vfu_B00841 PF00593 TonB dependent receptor vfu_B00845 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase vfu_B00846 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00846 PF03466 LysR substrate binding domain vfu_B00848 PF02001 Protein of unknown function DUF134 vfu_B00849 PF03466 LysR substrate binding domain vfu_B00849 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00850 PF00155 Aminotransferase class I and II vfu_B00851 PF00497 Bacterial extracellular solute-binding proteins, family 3 vfu_B00852 PF01047 MarR family vfu_B00853 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_B00853 PF00529 HlyD membrane-fusion protein of T1SS vfu_B00855 PF00561 alpha/beta hydrolase fold vfu_B00857 PF12833 Helix-turn-helix domain vfu_B00857 PF07883 Cupin domain vfu_B00859 PF00375 Sodium:dicarboxylate symporter family vfu_B00860 PF03600 Citrate transporter vfu_B00862 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain vfu_B00862 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain vfu_B00863 PF00730 HhH-GPD superfamily base excision DNA repair protein vfu_B00863 PF06029 AlkA N-terminal domain vfu_B00864 PF07681 DoxX vfu_B00866 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin vfu_B00867 PF07969 Amidohydrolase family vfu_B00868 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00868 PF03466 LysR substrate binding domain vfu_B00873 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase vfu_B00874 PF02225 PA domain vfu_B00874 PF04389 Peptidase family M28 vfu_B00876 PF04225 Opacity-associated protein A LysM-like domain vfu_B00876 PF01551 Peptidase family M23 vfu_B00877 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit vfu_B00877 PF02378 Phosphotransferase system, EIIC vfu_B00877 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 vfu_B00878 PF08125 Mannitol dehydrogenase C-terminal domain vfu_B00878 PF01232 Mannitol dehydrogenase Rossmann domain vfu_B00879 PF05068 Mannitol repressor vfu_B00880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold vfu_B00881 PF00158 Sigma-54 interaction domain vfu_B00881 PF02954 Bacterial regulatory protein, Fis family vfu_B00881 PF00989 PAS fold vfu_B00882 PF05524 PEP-utilising enzyme, N-terminal vfu_B00882 PF00391 PEP-utilising enzyme, mobile domain vfu_B00882 PF02896 PEP-utilising enzyme, TIM barrel domain vfu_B00883 PF02734 DAK2 domain vfu_B00884 PF02733 Dak1 domain vfu_B00885 PF00465 Iron-containing alcohol dehydrogenase vfu_B00887 PF07687 Peptidase dimerisation domain vfu_B00887 PF01546 Peptidase family M20/M25/M40 vfu_B00888 PF03806 AbgT putative transporter family vfu_B00889 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00889 PF03466 LysR substrate binding domain vfu_B00891 PF00037 4Fe-4S binding domain vfu_B00891 PF12838 4Fe-4S dicluster domain vfu_B00892 PF02613 Nitrate reductase delta subunit vfu_B00893 PF04976 DMSO reductase anchor subunit (DmsC) vfu_B00894 PF13247 4Fe-4S dicluster domain vfu_B00894 PF12800 4Fe-4S binding domain vfu_B00895 PF04879 Molybdopterin oxidoreductase Fe4S4 domain vfu_B00895 PF00384 Molybdopterin oxidoreductase vfu_B00895 PF01568 Molydopterin dinucleotide binding domain vfu_B00897 PF10437 Bacterial lipoate protein ligase C-terminus vfu_B00897 PF03099 Biotin/lipoate A/B protein ligase family vfu_B00898 PF00012 Hsp70 protein vfu_B00901 PF02811 PHP domain vfu_B00901 PF14579 Helix-hairpin-helix motif vfu_B00901 PF00929 Exonuclease vfu_B00901 PF07733 Bacterial DNA polymerase III alpha NTPase domain vfu_B00901 PF17657 Bacterial DNA polymerase III alpha subunit finger domain vfu_B00902 PF00132 Bacterial transferase hexapeptide (six repeats) vfu_B00904 PF00440 Bacterial regulatory proteins, tetR family vfu_B00905 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_B00906 PF00085 Thioredoxin vfu_B00907 PF00085 Thioredoxin vfu_B00909 PF07690 Major Facilitator Superfamily vfu_B00911 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain vfu_B00911 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_B00912 PF00581 Rhodanese-like domain vfu_B00914 PF17848 Acetyl-coA carboxylase zinc finger domain vfu_B00914 PF01039 Carboxyl transferase domain vfu_B00915 PF03466 LysR substrate binding domain vfu_B00915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00916 PF13599 Pentapeptide repeats (9 copies) vfu_B00918 PF03466 LysR substrate binding domain vfu_B00918 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00919 PF00356 Bacterial regulatory proteins, lacI family vfu_B00921 PF00083 Sugar (and other) transporter vfu_B00923 PF00106 short chain dehydrogenase vfu_B00924 PF03466 LysR substrate binding domain vfu_B00924 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00928 PF07694 5TMR of 5TMR-LYT vfu_B00928 PF00990 Diguanylate cyclase, GGDEF domain vfu_B00929 PF00155 Aminotransferase class I and II vfu_B00929 PF00392 Bacterial regulatory proteins, gntR family vfu_B00931 PF03733 Inner membrane component domain vfu_B00932 PF03992 Antibiotic biosynthesis monooxygenase vfu_B00936 PF12833 Helix-turn-helix domain vfu_B00937 PF00857 Isochorismatase family vfu_B00938 PF02311 AraC-like ligand binding domain vfu_B00938 PF12833 Helix-turn-helix domain vfu_B00939 PF00893 Small Multidrug Resistance protein vfu_B00940 PF13460 NAD(P)H-binding vfu_B00941 PF03466 LysR substrate binding domain vfu_B00941 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00942 PF01266 FAD dependent oxidoreductase vfu_B00943 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00943 PF08447 PAS fold vfu_B00943 PF13426 PAS domain vfu_B00944 PF08220 DeoR-like helix-turn-helix domain vfu_B00944 PF00455 DeoR C terminal sensor domain vfu_B00945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase vfu_B00945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase vfu_B00946 PF07005 Sugar-binding N-terminal domain vfu_B00946 PF17042 Nucleotide-binding C-terminal domain vfu_B00947 PF00596 Class II Aldolase and Adducin N-terminal domain vfu_B00948 PF01261 Xylose isomerase-like TIM barrel vfu_B00949 PF01370 NAD dependent epimerase/dehydratase family vfu_B00950 PF02447 GntP family permease vfu_B00951 PF01037 Lrp/AsnC ligand binding domain vfu_B00952 PF00266 Aminotransferase class-V vfu_B00953 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) vfu_B00954 PF00376 MerR family regulatory protein vfu_B00954 PF09278 MerR, DNA binding vfu_B00956 PF08241 Methyltransferase domain vfu_B00957 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00957 PF03466 LysR substrate binding domain vfu_B00959 PF00270 DEAD/DEAH box helicase vfu_B00959 PF00271 Helicase conserved C-terminal domain vfu_B00960 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase vfu_B00961 PF00171 Aldehyde dehydrogenase family vfu_B00962 PF01037 Lrp/AsnC ligand binding domain vfu_B00963 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00963 PF00672 HAMP domain vfu_B00965 PF00474 Sodium:solute symporter family vfu_B00967 PF18327 Proline utilization A proline dehydrogenase N-terminal domain vfu_B00967 PF00171 Aldehyde dehydrogenase family vfu_B00967 PF01619 Proline dehydrogenase vfu_B00967 PF14850 DNA-binding domain of Proline dehydrogenase vfu_B00968 PF12833 Helix-turn-helix domain vfu_B00970 PF03781 Sulfatase-modifying factor enzyme 1 vfu_B00971 PF00072 Response regulator receiver domain vfu_B00971 PF00196 Bacterial regulatory proteins, luxR family vfu_B00972 PF01243 Pyridoxamine 5'-phosphate oxidase vfu_B00972 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region vfu_B00974 PF00486 Transcriptional regulatory protein, C terminal vfu_B00974 PF00072 Response regulator receiver domain vfu_B00976 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00976 PF02743 Cache domain vfu_B00976 PF00672 HAMP domain vfu_B00977 PF01339 CheB methylesterase vfu_B00977 PF00072 Response regulator receiver domain vfu_B00978 PF03975 CheD chemotactic sensory transduction vfu_B00979 PF01739 CheR methyltransferase, SAM binding domain vfu_B00979 PF03705 CheR methyltransferase, all-alpha domain vfu_B00980 PF00672 HAMP domain vfu_B00980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00980 PF02203 Tar ligand binding domain homologue vfu_B00981 PF01584 CheW-like domain vfu_B00982 PF01584 CheW-like domain vfu_B00983 PF01627 Hpt domain vfu_B00983 PF02895 Signal transducing histidine kinase, homodimeric domain vfu_B00983 PF09078 CheY binding vfu_B00983 PF01584 CheW-like domain vfu_B00983 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B00984 PF00072 Response regulator receiver domain vfu_B00986 PF05127 Helicase vfu_B00986 PF13718 GNAT acetyltransferase 2 vfu_B00987 PF13416 Bacterial extracellular solute-binding protein vfu_B00988 PF08775 ParB family vfu_B00988 PF02195 ParB-like nuclease domain vfu_B00989 PF18607 ParA helix turn helix domain vfu_B00989 PF13614 AAA domain vfu_B00994 PF01709 Transcriptional regulator vfu_B00996 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B00996 PF03466 LysR substrate binding domain vfu_B00997 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase vfu_B00997 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase vfu_B00998 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B00998 PF00672 HAMP domain vfu_B00998 PF17200 Single Cache domain 2 vfu_B01000 PF00116 Cytochrome C oxidase subunit II, periplasmic domain vfu_B01000 PF06481 COX Aromatic Rich Motif vfu_B01001 PF00115 Cytochrome C and Quinol oxidase polypeptide I vfu_B01002 PF00510 Cytochrome c oxidase subunit III vfu_B01003 PF03626 Prokaryotic Cytochrome C oxidase subunit IV vfu_B01004 PF01040 UbiA prenyltransferase family vfu_B01005 PF10928 Protein of unknown function (DUF2810) vfu_B01006 PF17874 MalT-like TPR region vfu_B01006 PF00196 Bacterial regulatory proteins, luxR family vfu_B01007 PF00343 Carbohydrate phosphorylase vfu_B01008 PF02446 4-alpha-glucanotransferase vfu_B01009 PF00128 Alpha amylase, catalytic domain vfu_B01009 PF02806 Alpha amylase, C-terminal all-beta domain vfu_B01009 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) vfu_B01010 PF05638 Type VI secretion system effector, Hcp vfu_B01011 PF16671 Actin cross-linking domain vfu_B01011 PF04717 Type VI secretion system, phage-baseplate injector vfu_B01014 PF01124 MAPEG family vfu_B01020 PF00939 Sodium:sulfate symporter transmembrane region vfu_B01021 PF13302 Acetyltransferase (GNAT) domain vfu_B01022 PF01966 HD domain vfu_B01026 PF01212 Beta-eliminating lyase vfu_B01027 PF00704 Glycosyl hydrolases family 18 vfu_B01027 PF08329 Chitinase A, N-terminal domain vfu_B01029 PF00392 Bacterial regulatory proteins, gntR family vfu_B01029 PF07702 UTRA domain vfu_B01030 PF00005 ABC transporter vfu_B01032 PF00672 HAMP domain vfu_B01032 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B01035 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region vfu_B01035 PF01568 Molydopterin dinucleotide binding domain vfu_B01035 PF00384 Molybdopterin oxidoreductase vfu_B01035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain vfu_B01035 PF12838 4Fe-4S dicluster domain vfu_B01037 PF01569 PAP2 superfamily vfu_B01039 PF00664 ABC transporter transmembrane region vfu_B01039 PF00005 ABC transporter vfu_B01040 PF00128 Alpha amylase, catalytic domain vfu_B01040 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) vfu_B01041 PF02264 LamB porin vfu_B01042 PF07148 Maltose operon periplasmic protein precursor (MalM) vfu_B01044 PF00375 Sodium:dicarboxylate symporter family vfu_B01045 PF03193 RsgA GTPase vfu_B01047 PF02630 SCO1/SenC vfu_B01050 PF03616 Sodium/glutamate symporter vfu_B01051 PF07238 PilZ domain vfu_B01051 PF12945 Flagellar protein YcgR vfu_B01057 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vfu_B01057 PF00529 HlyD membrane-fusion protein of T1SS vfu_B01058 PF11742 Protein of unknown function (DUF3302) vfu_B01059 PF00990 Diguanylate cyclase, GGDEF domain vfu_B01062 PF01048 Phosphorylase superfamily vfu_B01063 PF08349 Protein of unknown function (DUF1722) vfu_B01064 PF13411 MerR HTH family regulatory protein vfu_B01065 PF03441 FAD binding domain of DNA photolyase vfu_B01065 PF00875 DNA photolyase vfu_B01066 PF17969 L,D-transpeptidase C-terminal domain vfu_B01066 PF01476 LysM domain vfu_B01066 PF03734 L,D-transpeptidase catalytic domain vfu_B01068 PF00270 DEAD/DEAH box helicase vfu_B01068 PF00271 Helicase conserved C-terminal domain vfu_B01069 PF00672 HAMP domain vfu_B01069 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B01070 PF12849 PBP superfamily domain vfu_B01071 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B01072 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B01073 PF00005 ABC transporter vfu_B01074 PF00990 Diguanylate cyclase, GGDEF domain vfu_B01074 PF17152 Periplasmic sensor domain vfu_B01077 PF00916 Sulfate permease family vfu_B01077 PF01740 STAS domain vfu_B01080 PF01476 LysM domain vfu_B01080 PF08525 Opacity-associated protein A N-terminal motif vfu_B01080 PF01551 Peptidase family M23 vfu_B01081 PF00563 EAL domain vfu_B01081 PF08447 PAS fold vfu_B01081 PF00990 Diguanylate cyclase, GGDEF domain vfu_B01081 PF08448 PAS fold vfu_B01082 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B01082 PF03466 LysR substrate binding domain vfu_B01083 PF07690 Major Facilitator Superfamily vfu_B01086 PF00462 Glutaredoxin vfu_B01088 PF00267 Gram-negative porin vfu_B01089 PF02566 OsmC-like protein vfu_B01090 PF01047 MarR family vfu_B01091 PF01557 Fumarylacetoacetate (FAA) hydrolase family vfu_B01096 PF01810 LysE type translocator vfu_B01098 PF00724 NADH:flavin oxidoreductase / NADH oxidase family vfu_B01099 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain vfu_B01099 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III vfu_B01099 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II vfu_B01099 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I vfu_B01100 PF02790 Cytochrome C oxidase subunit II, transmembrane domain vfu_B01100 PF00116 Cytochrome C oxidase subunit II, periplasmic domain vfu_B01101 PF00115 Cytochrome C and Quinol oxidase polypeptide I vfu_B01102 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 vfu_B01103 PF00510 Cytochrome c oxidase subunit III vfu_B01107 PF02628 Cytochrome oxidase assembly protein vfu_B01108 PF01040 UbiA prenyltransferase family vfu_B01109 PF12706 Beta-lactamase superfamily domain vfu_B01111 PF00793 DAHP synthetase I family vfu_B01112 PF01554 MatE vfu_B01113 PF00563 EAL domain vfu_B01113 PF05231 MASE1 vfu_B01113 PF13426 PAS domain vfu_B01113 PF08447 PAS fold vfu_B01113 PF08448 PAS fold vfu_B01113 PF00990 Diguanylate cyclase, GGDEF domain vfu_B01118 PF12833 Helix-turn-helix domain vfu_B01118 PF02311 AraC-like ligand binding domain vfu_B01119 PF02567 Phenazine biosynthesis-like protein vfu_B01121 PF00392 Bacterial regulatory proteins, gntR family vfu_B01121 PF00155 Aminotransferase class I and II vfu_B01122 PF00892 EamA-like transporter family vfu_B01123 PF07274 Protein of unknown function (DUF1440) vfu_B01124 PF00657 GDSL-like Lipase/Acylhydrolase vfu_B01125 PF07968 Leukocidin/Hemolysin toxin family vfu_B01125 PF12563 Hemolytic toxin N terminal vfu_B01125 PF16458 Beta-prism lectin vfu_B01128 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain vfu_B01128 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family vfu_B01129 PF02028 BCCT, betaine/carnitine/choline family transporter vfu_B01130 PF08220 DeoR-like helix-turn-helix domain vfu_B01130 PF00455 DeoR C terminal sensor domain vfu_B01131 PF02894 Oxidoreductase family, C-terminal alpha/beta domain vfu_B01131 PF01408 Oxidoreductase family, NAD-binding Rossmann fold vfu_B01132 PF03928 Haem-degrading vfu_B01133 PF00672 HAMP domain vfu_B01133 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B01133 PF02743 Cache domain vfu_B01135 PF00579 tRNA synthetases class I (W and Y) vfu_B01135 PF01479 S4 domain vfu_B01141 PF13953 PapC C-terminal domain vfu_B01141 PF00577 Outer membrane usher protein vfu_B01141 PF13954 PapC N-terminal domain vfu_B01143 PF00691 OmpA family vfu_B01143 PF13677 Membrane MotB of proton-channel complex MotA/MotB vfu_B01144 PF00581 Rhodanese-like domain vfu_B01148 PF07690 Major Facilitator Superfamily vfu_B01149 PF03466 LysR substrate binding domain vfu_B01149 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B01150 PF00724 NADH:flavin oxidoreductase / NADH oxidase family vfu_B01151 PF00248 Aldo/keto reductase family vfu_B01152 PF00563 EAL domain vfu_B01152 PF12792 CSS motif domain associated with EAL vfu_B01154 PF08402 TOBE domain vfu_B01154 PF00005 ABC transporter vfu_B01158 PF01547 Bacterial extracellular solute-binding protein vfu_B01159 PF07702 UTRA domain vfu_B01159 PF00392 Bacterial regulatory proteins, gntR family vfu_B01160 PF13419 Haloacid dehalogenase-like hydrolase vfu_B01162 PF01740 STAS domain vfu_B01162 PF00916 Sulfate permease family vfu_B01164 PF16884 N-terminal domain of oxidoreductase vfu_B01164 PF00107 Zinc-binding dehydrogenase vfu_B01165 PF16925 Tetracyclin repressor-like, C-terminal domain vfu_B01165 PF00440 Bacterial regulatory proteins, tetR family vfu_B01166 PF00849 RNA pseudouridylate synthase vfu_B01167 PF00892 EamA-like transporter family vfu_B01169 PF01047 MarR family vfu_B01170 PF01810 LysE type translocator vfu_B01171 PF01037 Lrp/AsnC ligand binding domain vfu_B01185 PF07724 AAA domain (Cdc48 subfamily) vfu_B01185 PF17871 AAA lid domain vfu_B01185 PF10431 C-terminal, D2-small domain, of ClpB protein vfu_B01185 PF00004 ATPase family associated with various cellular activities (AAA) vfu_B01191 PF04717 Type VI secretion system, phage-baseplate injector vfu_B01191 PF16671 Actin cross-linking domain vfu_B01195 PF05025 RbsD / FucU transport protein family vfu_B01196 PF00005 ABC transporter vfu_B01197 PF02653 Branched-chain amino acid transport system / permease component vfu_B01198 PF13407 Periplasmic binding protein domain vfu_B01199 PF00294 pfkB family carbohydrate kinase vfu_B01200 PF00356 Bacterial regulatory proteins, lacI family vfu_B01201 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B01201 PF03466 LysR substrate binding domain vfu_B01202 PF01048 Phosphorylase superfamily vfu_B01204 PF03009 Glycerophosphoryl diester phosphodiesterase family vfu_B01205 PF07690 Major Facilitator Superfamily vfu_B01206 PF03707 Bacterial signalling protein N terminal repeat vfu_B01206 PF00990 Diguanylate cyclase, GGDEF domain vfu_B01206 PF00563 EAL domain vfu_B01206 PF13188 PAS domain vfu_B01207 PF12729 Four helix bundle sensory module for signal transduction vfu_B01207 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B01207 PF00672 HAMP domain vfu_B01210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B01210 PF02743 Cache domain vfu_B01210 PF00512 His Kinase A (phospho-acceptor) domain vfu_B01211 PF07702 UTRA domain vfu_B01211 PF00392 Bacterial regulatory proteins, gntR family vfu_B01212 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit vfu_B01212 PF02378 Phosphotransferase system, EIIC vfu_B01212 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 vfu_B01213 PF01074 Glycosyl hydrolases family 38 N-terminal domain vfu_B01213 PF07748 Glycosyl hydrolases family 38 C-terminal domain vfu_B01213 PF09261 Alpha mannosidase middle domain vfu_B01214 PF02595 Glycerate kinase family vfu_B01215 PF01238 Phosphomannose isomerase type I vfu_B01216 PF01906 Putative heavy-metal-binding vfu_B01217 PF14583 Oligogalacturonate lyase vfu_B01218 PF00474 Sodium:solute symporter family vfu_B01219 PF01554 MatE vfu_B01220 PF06917 Periplasmic pectate lyase vfu_B01221 PF01547 Bacterial extracellular solute-binding protein vfu_B01222 PF00005 ABC transporter vfu_B01222 PF03459 TOBE domain vfu_B01222 PF17912 MalK OB fold domain vfu_B01223 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B01224 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B01227 PF13229 Right handed beta helix region vfu_B01228 PF12729 Four helix bundle sensory module for signal transduction vfu_B01228 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B01228 PF00672 HAMP domain vfu_B01229 PF01095 Pectinesterase vfu_B01230 PF01081 KDPG and KHG aldolase vfu_B01231 PF00294 pfkB family carbohydrate kinase vfu_B01232 PF12833 Helix-turn-helix domain vfu_B01232 PF02311 AraC-like ligand binding domain vfu_B01233 PF00596 Class II Aldolase and Adducin N-terminal domain vfu_B01234 PF05336 L-rhamnose mutarotase vfu_B01235 PF06134 L-rhamnose isomerase (RhaA) vfu_B01236 PF00370 FGGY family of carbohydrate kinases, N-terminal domain vfu_B01236 PF02782 FGGY family of carbohydrate kinases, C-terminal domain vfu_B01237 PF07470 Glycosyl Hydrolase Family 88 vfu_B01238 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component vfu_B01240 PF03480 Bacterial extracellular solute-binding protein, family 7 vfu_B01243 PF07883 Cupin domain vfu_B01244 PF10688 Bacterial inner membrane protein vfu_B01246 PF01614 Bacterial transcriptional regulator vfu_B01246 PF09339 IclR helix-turn-helix domain vfu_B01247 PF00571 CBS domain vfu_B01251 PF13302 Acetyltransferase (GNAT) domain vfu_B01253 PF00392 Bacterial regulatory proteins, gntR family vfu_B01253 PF00155 Aminotransferase class I and II vfu_B01255 PF03783 Curli production assembly/transport component CsgG vfu_B01256 PF10614 Type VIII secretion system (T8SS), CsgF protein vfu_B01261 PF00005 ABC transporter vfu_B01261 PF08402 TOBE domain vfu_B01262 PF01547 Bacterial extracellular solute-binding protein vfu_B01263 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B01263 PF14785 Maltose transport system permease protein MalF P2 domain vfu_B01264 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B01267 PF00765 Autoinducer synthase vfu_B01268 PF03472 Autoinducer binding domain vfu_B01268 PF00196 Bacterial regulatory proteins, luxR family vfu_B01269 PF00455 DeoR C terminal sensor domain vfu_B01269 PF08220 DeoR-like helix-turn-helix domain vfu_B01273 PF05661 Protein of unknown function (DUF808) vfu_B01274 PF05958 tRNA (Uracil-5-)-methyltransferase vfu_B01275 PF01979 Amidohydrolase family vfu_B01276 PF03473 MOSC domain vfu_B01276 PF03476 MOSC N-terminal beta barrel domain vfu_B01276 PF00111 2Fe-2S iron-sulfur cluster binding domain vfu_B01282 PF00005 ABC transporter vfu_B01283 PF01032 FecCD transport family vfu_B01285 PF02472 Biopolymer transport protein ExbD/TolR vfu_B01286 PF01618 MotA/TolQ/ExbB proton channel family vfu_B01287 PF03544 Gram-negative bacterial TonB protein C-terminal vfu_B01288 PF04055 Radical SAM superfamily vfu_B01289 PF06228 Haem utilisation ChuX/HutX vfu_B01290 PF01243 Pyridoxamine 5'-phosphate oxidase vfu_B01291 PF00672 HAMP domain vfu_B01291 PF02743 Cache domain vfu_B01291 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B01292 PF13520 Amino acid permease vfu_B01293 PF01037 Lrp/AsnC ligand binding domain vfu_B01293 PF13404 AsnC-type helix-turn-helix domain vfu_B01298 PF00970 Oxidoreductase FAD-binding domain vfu_B01298 PF00175 Oxidoreductase NAD-binding domain vfu_B01298 PF00111 2Fe-2S iron-sulfur cluster binding domain vfu_B01299 PF12792 CSS motif domain associated with EAL vfu_B01299 PF00563 EAL domain vfu_B01301 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain vfu_B01301 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain vfu_B01304 PF01627 Hpt domain vfu_B01304 PF00512 His Kinase A (phospho-acceptor) domain vfu_B01304 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B01304 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) vfu_B01304 PF00072 Response regulator receiver domain vfu_B01304 PF00672 HAMP domain vfu_B01305 PF00990 Diguanylate cyclase, GGDEF domain vfu_B01305 PF00563 EAL domain vfu_B01305 PF03707 Bacterial signalling protein N terminal repeat vfu_B01306 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region vfu_B01309 PF02566 OsmC-like protein vfu_B01311 PF12464 Maltose acetyltransferase vfu_B01311 PF14602 Hexapeptide repeat of succinyl-transferase vfu_B01312 PF00892 EamA-like transporter family vfu_B01315 PF02753 Pili assembly chaperone PapD, C-terminal domain vfu_B01315 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain vfu_B01316 PF13953 PapC C-terminal domain vfu_B01316 PF13954 PapC N-terminal domain vfu_B01316 PF00577 Outer membrane usher protein vfu_B01318 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain vfu_B01318 PF02753 Pili assembly chaperone PapD, C-terminal domain vfu_B01319 PF01266 FAD dependent oxidoreductase vfu_B01320 PF08943 CsiD vfu_B01323 PF03466 LysR substrate binding domain vfu_B01323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B01324 PF01758 Sodium Bile acid symporter family vfu_B01325 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain vfu_B01325 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain vfu_B01326 PF02874 ATP synthase alpha/beta family, beta-barrel domain vfu_B01326 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain vfu_B01327 PF00231 ATP synthase vfu_B01328 PF02874 ATP synthase alpha/beta family, beta-barrel domain vfu_B01328 PF00306 ATP synthase alpha/beta chain, C terminal domain vfu_B01328 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain vfu_B01329 PF00213 ATP synthase delta (OSCP) subunit vfu_B01330 PF00430 ATP synthase B/B' CF(0) vfu_B01331 PF00137 ATP synthase subunit C vfu_B01332 PF00119 ATP synthase A chain vfu_B01334 PF00194 Eukaryotic-type carbonic anhydrase vfu_B01337 PF03060 Nitronate monooxygenase vfu_B01338 PF01810 LysE type translocator vfu_B01340 PF00270 DEAD/DEAH box helicase vfu_B01340 PF00271 Helicase conserved C-terminal domain vfu_B01341 PF02954 Bacterial regulatory protein, Fis family vfu_B01341 PF00072 Response regulator receiver domain vfu_B01341 PF00158 Sigma-54 interaction domain vfu_B01342 PF00512 His Kinase A (phospho-acceptor) domain vfu_B01342 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vfu_B01343 PF00672 HAMP domain vfu_B01343 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B01343 PF16591 Helical bimodular sensor domain vfu_B01345 PF01717 Cobalamin-independent synthase, Catalytic domain vfu_B01345 PF08267 Cobalamin-independent synthase, N-terminal domain vfu_B01346 PF02080 TrkA-C domain vfu_B01346 PF06826 Predicted Permease Membrane Region vfu_B01347 PF00132 Bacterial transferase hexapeptide (six repeats) vfu_B01348 PF02558 Ketopantoate reductase PanE/ApbA vfu_B01348 PF08546 Ketopantoate reductase PanE/ApbA C terminal vfu_B01357 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) vfu_B01358 PF02253 Phospholipase A1 vfu_B01360 PF02028 BCCT, betaine/carnitine/choline family transporter vfu_B01361 PF02347 Glycine cleavage system P-protein vfu_B01364 PF00464 Serine hydroxymethyltransferase vfu_B01366 PF01571 Aminomethyltransferase folate-binding domain vfu_B01366 PF08669 Glycine cleavage T-protein C-terminal barrel domain vfu_B01367 PF00990 Diguanylate cyclase, GGDEF domain vfu_B01367 PF00072 Response regulator receiver domain vfu_B01368 PF00990 Diguanylate cyclase, GGDEF domain vfu_B01368 PF00563 EAL domain vfu_B01368 PF03707 Bacterial signalling protein N terminal repeat vfu_B01369 PF00294 pfkB family carbohydrate kinase vfu_B01372 PF13419 Haloacid dehalogenase-like hydrolase vfu_B01378 PF00226 DnaJ domain vfu_B01378 PF00684 DnaJ central domain vfu_B01378 PF01556 DnaJ C terminal domain vfu_B01380 PF00990 Diguanylate cyclase, GGDEF domain vfu_B01380 PF00563 EAL domain vfu_B01380 PF00498 FHA domain vfu_B01381 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase vfu_B01381 PF12241 Trans-2-enoyl-CoA reductase catalytic region vfu_B01381 PF07055 Enoyl reductase FAD binding domain vfu_B01382 PF13472 GDSL-like Lipase/Acylhydrolase family vfu_B01383 PF00005 ABC transporter vfu_B01387 PF02626 Carboxyltransferase domain, subdomain A and B vfu_B01389 PF03746 LamB/YcsF family vfu_B01391 PF08448 PAS fold vfu_B01391 PF00563 EAL domain vfu_B01391 PF00990 Diguanylate cyclase, GGDEF domain vfu_B01391 PF05231 MASE1 vfu_B01391 PF08447 PAS fold vfu_B01391 PF13426 PAS domain vfu_B01392 PF16363 GDP-mannose 4,6 dehydratase vfu_B01393 PF00672 HAMP domain vfu_B01393 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B01393 PF12729 Four helix bundle sensory module for signal transduction vfu_B01394 PF03222 Tryptophan/tyrosine permease family vfu_B01396 PF04336 Acyl carrier protein phosphodiesterase vfu_B01397 PF00271 Helicase conserved C-terminal domain vfu_B01397 PF00270 DEAD/DEAH box helicase vfu_B01399 PF00034 Cytochrome c vfu_B01400 PF01212 Beta-eliminating lyase vfu_B01401 PF00293 NUDIX domain vfu_B01402 PF12592 Protein of unknown function (DUF3763) vfu_B01402 PF17868 AAA lid domain vfu_B01402 PF07728 AAA domain (dynein-related subfamily) vfu_B01403 PF05762 VWA domain containing CoxE-like protein vfu_B01405 PF00593 TonB dependent receptor vfu_B01405 PF07660 Secretin and TonB N terminus short domain vfu_B01405 PF07715 TonB-dependent Receptor Plug Domain vfu_B01408 PF00672 HAMP domain vfu_B01408 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B01411 PF03466 LysR substrate binding domain vfu_B01411 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B01412 PF00892 EamA-like transporter family vfu_B01414 PF00300 Histidine phosphatase superfamily (branch 1) vfu_B01415 PF01966 HD domain vfu_B01416 PF00465 Iron-containing alcohol dehydrogenase vfu_B01417 PF12833 Helix-turn-helix domain vfu_B01418 PF01979 Amidohydrolase family vfu_B01419 PF13192 Thioredoxin domain vfu_B01419 PF07992 Pyridine nucleotide-disulphide oxidoreductase vfu_B01421 PF10417 C-terminal domain of 1-Cys peroxiredoxin vfu_B01421 PF00578 AhpC/TSA family vfu_B01423 PF00682 HMGL-like vfu_B01424 PF00378 Enoyl-CoA hydratase/isomerase vfu_B01425 PF01039 Carboxyl transferase domain vfu_B01426 PF02770 Acyl-CoA dehydrogenase, middle domain vfu_B01426 PF00441 Acyl-CoA dehydrogenase, C-terminal domain vfu_B01426 PF02771 Acyl-CoA dehydrogenase, N-terminal domain vfu_B01427 PF00376 MerR family regulatory protein vfu_B01427 PF09278 MerR, DNA binding vfu_B01428 PF02803 Thiolase, C-terminal domain vfu_B01428 PF00108 Thiolase, N-terminal domain vfu_B01429 PF00171 Aldehyde dehydrogenase family vfu_B01430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain vfu_B01430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain vfu_B01430 PF02770 Acyl-CoA dehydrogenase, middle domain vfu_B01431 PF00378 Enoyl-CoA hydratase/isomerase vfu_B01432 PF00378 Enoyl-CoA hydratase/isomerase vfu_B01433 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase vfu_B01433 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase vfu_B01435 PF01144 Coenzyme A transferase vfu_B01438 PF07690 Major Facilitator Superfamily vfu_B01439 PF07516 SecA Wing and Scaffold domain vfu_B01439 PF07517 SecA DEAD-like domain vfu_B01439 PF01043 SecA preprotein cross-linking domain vfu_B01439 PF02810 SEC-C motif vfu_B01440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component vfu_B01442 PF03480 Bacterial extracellular solute-binding protein, family 7 vfu_B01443 PF07730 Histidine kinase vfu_B01443 PF17200 Single Cache domain 2 vfu_B01444 PF00196 Bacterial regulatory proteins, luxR family vfu_B01444 PF00072 Response regulator receiver domain vfu_B01445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B01445 PF03466 LysR substrate binding domain vfu_B01446 PF04715 Anthranilate synthase component I, N terminal region vfu_B01446 PF00425 chorismate binding enzyme vfu_B01446 PF00117 Glutamine amidotransferase class-I vfu_B01447 PF00465 Iron-containing alcohol dehydrogenase vfu_B01448 PF03180 NLPA lipoprotein vfu_B01451 PF12833 Helix-turn-helix domain vfu_B01451 PF02311 AraC-like ligand binding domain vfu_B01453 PF12849 PBP superfamily domain vfu_B01454 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B01455 PF00528 Binding-protein-dependent transport system inner membrane component vfu_B01456 PF00005 ABC transporter vfu_B01457 PF02798 Glutathione S-transferase, N-terminal domain vfu_B01460 PF01012 Electron transfer flavoprotein domain vfu_B01461 PF01012 Electron transfer flavoprotein domain vfu_B01461 PF00766 Electron transfer flavoprotein FAD-binding domain vfu_B01463 PF02817 e3 binding domain vfu_B01463 PF00364 Biotin-requiring enzyme vfu_B01463 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) vfu_B01464 PF02780 Transketolase, C-terminal domain vfu_B01464 PF02779 Transketolase, pyrimidine binding domain vfu_B01465 PF00676 Dehydrogenase E1 component vfu_B01466 PF00563 EAL domain vfu_B01466 PF03707 Bacterial signalling protein N terminal repeat vfu_B01466 PF00990 Diguanylate cyclase, GGDEF domain vfu_B01470 PF07729 FCD domain vfu_B01470 PF00392 Bacterial regulatory proteins, gntR family vfu_B01471 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus vfu_B01471 PF08666 SAF domain vfu_B01472 PF08666 SAF domain vfu_B01472 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus vfu_B01473 PF08125 Mannitol dehydrogenase C-terminal domain vfu_B01473 PF01232 Mannitol dehydrogenase Rossmann domain vfu_B01474 PF02614 Glucuronate isomerase vfu_B01476 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component vfu_B01477 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component vfu_B01478 PF03480 Bacterial extracellular solute-binding protein, family 7 vfu_B01480 PF01810 LysE type translocator vfu_B01481 PF02230 Phospholipase/Carboxylesterase vfu_B01482 PF13409 Glutathione S-transferase, N-terminal domain vfu_B01483 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vfu_B01483 PF03466 LysR substrate binding domain vfu_B01484 PF00474 Sodium:solute symporter family vfu_B01486 PF02423 Ornithine cyclodeaminase/mu-crystallin family vfu_B01487 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component vfu_B01489 PF03480 Bacterial extracellular solute-binding protein, family 7 vfu_B01490 PF14748 Pyrroline-5-carboxylate reductase dimerisation vfu_B01490 PF03807 NADP oxidoreductase coenzyme F420-dependent vfu_B01491 PF12833 Helix-turn-helix domain vfu_B01496 PF01975 Survival protein SurE vfu_B01498 PF00842 Alanine racemase, C-terminal domain vfu_B01498 PF01168 Alanine racemase, N-terminal domain vfu_B01500 PF12833 Helix-turn-helix domain vfu_B01503 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vfu_B01503 PF00672 HAMP domain vfu_B01503 PF12729 Four helix bundle sensory module for signal transduction vfu_B01504 PF06719 AraC-type transcriptional regulator N-terminus vfu_B01504 PF12833 Helix-turn-helix domain vfu_B01508 PF00155 Aminotransferase class I and II vfu_B01510 PF12848 ABC transporter vfu_B01510 PF16326 ABC transporter C-terminal domain vfu_B01510 PF00005 ABC transporter vfu_B01511 PF00589 Phage integrase family vfu_B01511 PF13495 Phage integrase, N-terminal SAM-like domain vfu_B01522 PF13737 Transposase DDE domain