locus-tag class description IUJ52_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_00015 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_00015 PF09308 LuxQ, periplasmic IUJ52_00015 PF00072 Response regulator receiver domain IUJ52_00020 PF00425 chorismate binding enzyme IUJ52_00020 PF04715 Anthranilate synthase component I, N terminal region IUJ52_00035 PF04317 YcjX-like family, DUF463 IUJ52_00040 PF05128 Domain of unknown function (DUF697) IUJ52_00045 PF00158 Sigma-54 interaction domain IUJ52_00045 PF18024 Helix-turn-helix domain IUJ52_00050 PF13302 Acetyltransferase (GNAT) domain IUJ52_00065 PF00892 EamA-like transporter family IUJ52_00070 PF00939 Sodium:sulfate symporter transmembrane region IUJ52_00075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_00075 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_00075 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ52_00080 PF00158 Sigma-54 interaction domain IUJ52_00080 PF00072 Response regulator receiver domain IUJ52_00080 PF02954 Bacterial regulatory protein, Fis family IUJ52_00085 PF03466 LysR substrate binding domain IUJ52_00085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_00090 PF03992 Antibiotic biosynthesis monooxygenase IUJ52_00095 PF00881 Nitroreductase family IUJ52_00100 PF04400 (Na+)-NQR maturation NqrM IUJ52_00110 PF02837 Glycosyl hydrolases family 2, sugar binding domain IUJ52_00110 PF16353 Domain of unknown function(DUF4981) IUJ52_00110 PF00703 Glycosyl hydrolases family 2 IUJ52_00110 PF02929 Beta galactosidase small chain IUJ52_00110 PF02836 Glycosyl hydrolases family 2, TIM barrel domain IUJ52_00115 PF13407 Periplasmic binding protein domain IUJ52_00120 PF00005 ABC transporter IUJ52_00125 PF02653 Branched-chain amino acid transport system / permease component IUJ52_00135 PF01970 Tripartite tricarboxylate transporter TctA family IUJ52_00155 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IUJ52_00155 PF12833 Helix-turn-helix domain IUJ52_00155 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IUJ52_00155 PF02805 Metal binding domain of Ada IUJ52_00170 PF00285 Citrate synthase, C-terminal domain IUJ52_00175 PF00694 Aconitase C-terminal domain IUJ52_00175 PF00330 Aconitase family (aconitate hydratase) IUJ52_00180 PF04303 PrpF protein IUJ52_00185 PF16177 Acetyl-coenzyme A synthetase N-terminus IUJ52_00185 PF00501 AMP-binding enzyme IUJ52_00185 PF13193 AMP-binding enzyme C-terminal domain IUJ52_00195 PF00529 HlyD membrane-fusion protein of T1SS IUJ52_00195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_00200 PF07690 Major Facilitator Superfamily IUJ52_00215 PF00501 AMP-binding enzyme IUJ52_00215 PF13193 AMP-binding enzyme C-terminal domain IUJ52_00215 PF00668 Condensation domain IUJ52_00215 PF00550 Phosphopantetheine attachment site IUJ52_00220 PF07687 Peptidase dimerisation domain IUJ52_00220 PF01546 Peptidase family M20/M25/M40 IUJ52_00225 PF12792 CSS motif domain associated with EAL IUJ52_00225 PF00563 EAL domain IUJ52_00230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ52_00235 PF04209 homogentisate 1,2-dioxygenase IUJ52_00245 PF02798 Glutathione S-transferase, N-terminal domain IUJ52_00245 PF14497 Glutathione S-transferase, C-terminal domain IUJ52_00265 PF04074 YhcH/YjgK/YiaL IUJ52_00280 PF00455 DeoR C terminal sensor domain IUJ52_00280 PF08220 DeoR-like helix-turn-helix domain IUJ52_00285 PF00005 ABC transporter IUJ52_00285 PF17912 MalK OB fold domain IUJ52_00290 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_00295 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_00300 PF13416 Bacterial extracellular solute-binding protein IUJ52_00305 PF00056 lactate/malate dehydrogenase, NAD binding domain IUJ52_00305 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IUJ52_00310 PF00753 Metallo-beta-lactamase superfamily IUJ52_00315 PF08212 Lipocalin-like domain IUJ52_00325 PF01618 MotA/TolQ/ExbB proton channel family IUJ52_00330 PF01618 MotA/TolQ/ExbB proton channel family IUJ52_00335 PF02472 Biopolymer transport protein ExbD/TolR IUJ52_00340 PF03544 Gram-negative bacterial TonB protein C-terminal IUJ52_00355 PF01734 Patatin-like phospholipase IUJ52_00360 PF01068 ATP dependent DNA ligase domain IUJ52_00360 PF14743 DNA ligase OB-like domain IUJ52_00370 PF01554 MatE IUJ52_00375 PF00677 Lumazine binding domain IUJ52_00385 PF03881 Fructosamine kinase IUJ52_00395 PF00877 NlpC/P60 family IUJ52_00400 PF02743 Cache domain IUJ52_00400 PF00672 HAMP domain IUJ52_00400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_00410 PF03942 DTW domain IUJ52_00415 PF00480 ROK family IUJ52_00425 PF03454 MoeA C-terminal region (domain IV) IUJ52_00425 PF00994 Probable molybdopterin binding domain IUJ52_00425 PF03453 MoeA N-terminal region (domain I and II) IUJ52_00430 PF12804 MobA-like NTP transferase domain IUJ52_00435 PF08402 TOBE domain IUJ52_00435 PF00005 ABC transporter IUJ52_00440 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_00445 PF12849 PBP superfamily domain IUJ52_00450 PF00072 Response regulator receiver domain IUJ52_00450 PF00158 Sigma-54 interaction domain IUJ52_00450 PF02954 Bacterial regulatory protein, Fis family IUJ52_00455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_00455 PF00989 PAS fold IUJ52_00455 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_00470 PF02634 FdhD/NarQ family IUJ52_00490 PF02613 Nitrate reductase delta subunit IUJ52_00500 PF01568 Molydopterin dinucleotide binding domain IUJ52_00500 PF00384 Molybdopterin oxidoreductase IUJ52_00500 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ52_00505 PF13247 4Fe-4S dicluster domain IUJ52_00520 PF00909 Ammonium Transporter Family IUJ52_00525 PF02146 Sir2 family IUJ52_00530 PF13416 Bacterial extracellular solute-binding protein IUJ52_00535 PF13416 Bacterial extracellular solute-binding protein IUJ52_00540 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_00545 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_00550 PF08402 TOBE domain IUJ52_00550 PF00005 ABC transporter IUJ52_00570 PF01171 PP-loop family IUJ52_00575 PF00582 Universal stress protein family IUJ52_00580 PF13545 Crp-like helix-turn-helix domain IUJ52_00580 PF00027 Cyclic nucleotide-binding domain IUJ52_00595 PF00403 Heavy-metal-associated domain IUJ52_00605 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ52_00605 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP IUJ52_00620 PF00115 Cytochrome C and Quinol oxidase polypeptide I IUJ52_00635 PF09308 LuxQ, periplasmic IUJ52_00635 PF00072 Response regulator receiver domain IUJ52_00635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_00635 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_00640 PF01566 Natural resistance-associated macrophage protein IUJ52_00655 PF06303 MatP N-terminal domain IUJ52_00655 PF17414 MatP C-terminal ribbon-helix-helix domain IUJ52_00660 PF05362 Lon protease (S16) C-terminal proteolytic domain IUJ52_00660 PF13654 AAA domain IUJ52_00665 PF07977 FabA-like domain IUJ52_00670 PF04957 Ribosome modulation factor IUJ52_00680 PF12848 ABC transporter IUJ52_00680 PF16326 ABC transporter C-terminal domain IUJ52_00680 PF00005 ABC transporter IUJ52_00690 PF01170 Putative RNA methylase family UPF0020 IUJ52_00690 PF10672 S-adenosylmethionine-dependent methyltransferase IUJ52_00690 PF02926 THUMP domain IUJ52_00695 PF07126 Cell-division protein ZapC IUJ52_00700 PF01180 Dihydroorotate dehydrogenase IUJ52_00705 PF05088 Bacterial NAD-glutamate dehydrogenase IUJ52_00715 PF17432 Domain of unknown function (DUF3458_C) ARM repeats IUJ52_00715 PF01433 Peptidase family M1 domain IUJ52_00715 PF11940 Domain of unknown function (DUF3458) Ig-like fold IUJ52_00730 PF11818 C-terminal domain of tail specific protease (DUF3340) IUJ52_00730 PF00595 PDZ domain IUJ52_00730 PF03572 Peptidase family S41 IUJ52_00730 PF17804 Tail specific protease N-terminal domain IUJ52_00735 PF04352 ProQ/FINO family IUJ52_00735 PF17516 ProQ C-terminal domain IUJ52_00740 PF13185 GAF domain IUJ52_00745 PF00664 ABC transporter transmembrane region IUJ52_00745 PF00005 ABC transporter IUJ52_00750 PF04403 Paraquat-inducible protein A IUJ52_00755 PF02470 MlaD protein IUJ52_00760 PF01189 16S rRNA methyltransferase RsmB/F IUJ52_00760 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF IUJ52_00760 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF IUJ52_00765 PF17783 CvfB-like winged helix domain IUJ52_00765 PF13509 S1 domain IUJ52_00780 PF00391 PEP-utilising enzyme, mobile domain IUJ52_00780 PF02896 PEP-utilising enzyme, TIM barrel domain IUJ52_00780 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IUJ52_00785 PF00793 DAHP synthetase I family IUJ52_00790 PF04461 Protein of unknown function (DUF520) IUJ52_00795 PF01641 SelR domain IUJ52_00810 PF01235 Sodium:alanine symporter family IUJ52_00835 PF16671 Actin cross-linking domain IUJ52_00835 PF04717 Type VI secretion system, phage-baseplate injector IUJ52_00840 PF05638 Type VI secretion system effector, Hcp IUJ52_00845 PF02074 Carboxypeptidase Taq (M32) metallopeptidase IUJ52_00850 PF07715 TonB-dependent Receptor Plug Domain IUJ52_00850 PF00593 TonB dependent receptor IUJ52_00855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_00855 PF03466 LysR substrate binding domain IUJ52_00860 PF00005 ABC transporter IUJ52_00865 PF01032 FecCD transport family IUJ52_00870 PF01032 FecCD transport family IUJ52_00890 PF09339 IclR helix-turn-helix domain IUJ52_00890 PF01614 Bacterial transcriptional regulator IUJ52_00895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_00895 PF03466 LysR substrate binding domain IUJ52_00900 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IUJ52_00900 PF00355 Rieske [2Fe-2S] domain IUJ52_00905 PF00866 Ring hydroxylating beta subunit IUJ52_00910 PF00355 Rieske [2Fe-2S] domain IUJ52_00915 PF00106 short chain dehydrogenase IUJ52_00920 PF14759 Reductase C-terminal IUJ52_00920 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_00925 PF00083 Sugar (and other) transporter IUJ52_00930 PF00682 HMGL-like IUJ52_00930 PF07836 DmpG-like communication domain IUJ52_00935 PF01118 Semialdehyde dehydrogenase, NAD binding domain IUJ52_00935 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation IUJ52_00940 PF01557 Fumarylacetoacetate (FAA) hydrolase family IUJ52_00945 PF12697 Alpha/beta hydrolase family IUJ52_00950 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IUJ52_00955 PF01494 FAD binding domain IUJ52_00965 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IUJ52_00965 PF00271 Helicase conserved C-terminal domain IUJ52_00965 PF04408 Helicase associated domain (HA2) IUJ52_00965 PF11898 Domain of unknown function (DUF3418) IUJ52_00965 PF00270 DEAD/DEAH box helicase IUJ52_00970 PF02525 Flavodoxin-like fold IUJ52_01000 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_01010 PF00012 Hsp70 protein IUJ52_01015 PF00012 Hsp70 protein IUJ52_01020 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_01030 PF03707 Bacterial signalling protein N terminal repeat IUJ52_01030 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_01030 PF00563 EAL domain IUJ52_01045 PF13417 Glutathione S-transferase, N-terminal domain IUJ52_01045 PF04399 Glutaredoxin 2, C terminal domain IUJ52_01050 PF07859 alpha/beta hydrolase fold IUJ52_01060 PF18364 Molybdopterin oxidoreductase N-terminal domain IUJ52_01060 PF00384 Molybdopterin oxidoreductase IUJ52_01060 PF01568 Molydopterin dinucleotide binding domain IUJ52_01065 PF03264 NapC/NirT cytochrome c family, N-terminal region IUJ52_01070 PF06508 Queuosine biosynthesis protein QueC IUJ52_01075 PF04055 Radical SAM superfamily IUJ52_01085 PF14824 Sirohaem biosynthesis protein central IUJ52_01085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUJ52_01085 PF10414 Sirohaem synthase dimerisation region IUJ52_01090 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ52_01095 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_01100 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_01105 PF00005 ABC transporter IUJ52_01110 PF01027 Inhibitor of apoptosis-promoting Bax1 IUJ52_01115 PF04358 DsrC like protein IUJ52_01120 PF00708 Acylphosphatase IUJ52_01125 PF17785 PUA-like domain IUJ52_01125 PF10672 S-adenosylmethionine-dependent methyltransferase IUJ52_01130 PF06433 Methylamine dehydrogenase heavy chain (MADH) IUJ52_01140 PF00578 AhpC/TSA family IUJ52_01145 PF02975 Methylamine dehydrogenase, L chain IUJ52_01165 PF00141 Peroxidase IUJ52_01170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_01170 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_01170 PF00672 HAMP domain IUJ52_01175 PF00486 Transcriptional regulatory protein, C terminal IUJ52_01175 PF00072 Response regulator receiver domain IUJ52_01180 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IUJ52_01180 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IUJ52_01195 PF00924 Mechanosensitive ion channel IUJ52_01195 PF05552 Conserved TM helix IUJ52_01200 PF01699 Sodium/calcium exchanger protein IUJ52_01205 PF13426 PAS domain IUJ52_01205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_01205 PF08447 PAS fold IUJ52_01240 PF00072 Response regulator receiver domain IUJ52_01240 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_01250 PF02769 AIR synthase related protein, C-terminal domain IUJ52_01250 PF00586 AIR synthase related protein, N-terminal domain IUJ52_01255 PF00581 Rhodanese-like domain IUJ52_01260 PF02635 DsrE/DsrF-like family IUJ52_01265 PF02492 CobW/HypB/UreG, nucleotide-binding domain IUJ52_01270 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA IUJ52_01275 PF00586 AIR synthase related protein, N-terminal domain IUJ52_01275 PF02769 AIR synthase related protein, C-terminal domain IUJ52_01280 PF01924 Hydrogenase formation hypA family IUJ52_01285 PF01455 HupF/HypC family IUJ52_01290 PF00708 Acylphosphatase IUJ52_01290 PF01300 Telomere recombination IUJ52_01290 PF07503 HypF finger IUJ52_01290 PF17788 HypF Kae1-like domain IUJ52_01295 PF04955 HupE / UreJ protein IUJ52_01300 PF02634 FdhD/NarQ family IUJ52_01305 PF01590 GAF domain IUJ52_01305 PF00158 Sigma-54 interaction domain IUJ52_01315 PF13247 4Fe-4S dicluster domain IUJ52_01315 PF12800 4Fe-4S binding domain IUJ52_01320 PF01750 Hydrogenase maturation protease IUJ52_01325 PF07450 Formate hydrogenlyase maturation protein HycH IUJ52_01330 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IUJ52_01335 PF12838 4Fe-4S dicluster domain IUJ52_01340 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IUJ52_01340 PF00374 Nickel-dependent hydrogenase IUJ52_01340 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IUJ52_01345 PF00146 NADH dehydrogenase IUJ52_01350 PF00361 Proton-conducting membrane transporter IUJ52_01355 PF00037 4Fe-4S binding domain IUJ52_01355 PF12798 4Fe-4S binding domain IUJ52_01360 PF03144 Elongation factor Tu domain 2 IUJ52_01360 PF09105 Elongation factor SelB, winged helix IUJ52_01360 PF09106 Elongation factor SelB, winged helix IUJ52_01360 PF09107 Elongation factor SelB, winged helix IUJ52_01360 PF00009 Elongation factor Tu GTP binding domain IUJ52_01365 PF12390 Selenocysteine synthase N terminal IUJ52_01365 PF03841 L-seryl-tRNA selenium transferase IUJ52_01375 PF00072 Response regulator receiver domain IUJ52_01375 PF01584 CheW-like domain IUJ52_01385 PF00072 Response regulator receiver domain IUJ52_01385 PF12431 Transcriptional regulator IUJ52_01390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_01390 PF00989 PAS fold IUJ52_01390 PF17203 Single cache domain 3 IUJ52_01390 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain IUJ52_01405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_01425 PF04204 Homoserine O-succinyltransferase IUJ52_01440 PF05971 RNA methyltransferase IUJ52_01445 PF01863 Protein of unknown function DUF45 IUJ52_01455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_01455 PF03466 LysR substrate binding domain IUJ52_01480 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ52_01480 PF12464 Maltose acetyltransferase IUJ52_01490 PF02264 LamB porin IUJ52_01495 PF08532 Beta-galactosidase trimerisation domain IUJ52_01495 PF08533 Beta-galactosidase C-terminal domain IUJ52_01495 PF02449 Beta-galactosidase IUJ52_01500 PF07745 Glycosyl hydrolase family 53 IUJ52_01505 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_01510 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_01515 PF13416 Bacterial extracellular solute-binding protein IUJ52_01520 PF17912 MalK OB fold domain IUJ52_01520 PF00005 ABC transporter IUJ52_01525 PF00356 Bacterial regulatory proteins, lacI family IUJ52_01570 PF04972 BON domain IUJ52_01570 PF00263 Bacterial type II and III secretion system protein IUJ52_01570 PF13629 Pilus formation protein N terminal region IUJ52_01575 PF00437 Type II/IV secretion system protein IUJ52_01640 PF00005 ABC transporter IUJ52_01645 PF01032 FecCD transport family IUJ52_01650 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IUJ52_01660 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase IUJ52_01665 PF02654 Cobalamin-5-phosphate synthase IUJ52_01670 PF02277 Phosphoribosyltransferase IUJ52_01675 PF01613 Flavin reductase like domain IUJ52_01685 PF00375 Sodium:dicarboxylate symporter family IUJ52_01690 PF08411 Exonuclease C-terminal IUJ52_01690 PF00929 Exonuclease IUJ52_01695 PF03788 LrgA family IUJ52_01700 PF04172 LrgB-like family IUJ52_01705 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region IUJ52_01705 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IUJ52_01710 PF08448 PAS fold IUJ52_01710 PF00563 EAL domain IUJ52_01710 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_01710 PF08447 PAS fold IUJ52_01730 PF02222 ATP-grasp domain IUJ52_01735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_01735 PF08447 PAS fold IUJ52_01735 PF13426 PAS domain IUJ52_01740 PF05724 Thiopurine S-methyltransferase (TPMT) IUJ52_01745 PF05488 PAAR motif IUJ52_01750 PF00216 Bacterial DNA-binding protein IUJ52_01755 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IUJ52_01755 PF03483 B3/4 domain IUJ52_01755 PF03484 tRNA synthetase B5 domain IUJ52_01755 PF03147 Ferredoxin-fold anticodon binding domain IUJ52_01755 PF01588 Putative tRNA binding domain IUJ52_01760 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IUJ52_01760 PF01409 tRNA synthetases class II core domain (F) IUJ52_01770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_01770 PF03466 LysR substrate binding domain IUJ52_01775 PF00072 Response regulator receiver domain IUJ52_01775 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_01780 PF07995 Glucose / Sorbosone dehydrogenase IUJ52_01805 PF01066 CDP-alcohol phosphatidyltransferase IUJ52_01810 PF02151 UvrB/uvrC motif IUJ52_01810 PF01541 GIY-YIG catalytic domain IUJ52_01810 PF08459 UvrC Helix-hairpin-helix N-terminal IUJ52_01815 PF00072 Response regulator receiver domain IUJ52_01815 PF00196 Bacterial regulatory proteins, luxR family IUJ52_01820 PF00136 DNA polymerase family B IUJ52_01820 PF03104 DNA polymerase family B, exonuclease domain IUJ52_01830 PF01132 Elongation factor P (EF-P) OB domain IUJ52_01830 PF08207 Elongation factor P (EF-P) KOW-like domain IUJ52_01830 PF09285 Elongation factor P, C-terminal IUJ52_01835 PF04269 Protein of unknown function, DUF440 IUJ52_01840 PF04266 ASCH domain IUJ52_01845 PF00392 Bacterial regulatory proteins, gntR family IUJ52_01845 PF07702 UTRA domain IUJ52_01850 PF01979 Amidohydrolase family IUJ52_01855 PF00491 Arginase family IUJ52_01860 PF01175 Urocanase Rossmann-like domain IUJ52_01860 PF17391 Urocanase N-terminal domain IUJ52_01860 PF17392 Urocanase C-terminal domain IUJ52_01865 PF00221 Aromatic amino acid lyase IUJ52_01880 PF04191 Phospholipid methyltransferase IUJ52_01885 PF02913 FAD linked oxidases, C-terminal domain IUJ52_01885 PF01565 FAD binding domain IUJ52_01885 PF13183 4Fe-4S dicluster domain IUJ52_01900 PF00691 OmpA family IUJ52_01900 PF13488 Glycine zipper IUJ52_01920 PF01259 SAICAR synthetase IUJ52_01925 PF00202 Aminotransferase class-III IUJ52_01930 PF00171 Aldehyde dehydrogenase family IUJ52_01935 PF04371 Porphyromonas-type peptidyl-arginine deiminase IUJ52_01940 PF00795 Carbon-nitrogen hydrolase IUJ52_01945 PF01266 FAD dependent oxidoreductase IUJ52_01950 PF00171 Aldehyde dehydrogenase family IUJ52_01955 PF07883 Cupin domain IUJ52_01955 PF01381 Helix-turn-helix IUJ52_01960 PF07722 Peptidase C26 IUJ52_01965 PF00120 Glutamine synthetase, catalytic domain IUJ52_01970 PF03553 Na+/H+ antiporter family IUJ52_01975 PF13533 Biotin-lipoyl like IUJ52_01980 PF07690 Major Facilitator Superfamily IUJ52_01985 PF03466 LysR substrate binding domain IUJ52_01985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_02000 PF00270 DEAD/DEAH box helicase IUJ52_02000 PF08482 ATP-dependent helicase C-terminal IUJ52_02000 PF04408 Helicase associated domain (HA2) IUJ52_02000 PF00271 Helicase conserved C-terminal domain IUJ52_02005 PF00390 Malic enzyme, N-terminal domain IUJ52_02005 PF03949 Malic enzyme, NAD binding domain IUJ52_02015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_02015 PF03466 LysR substrate binding domain IUJ52_02035 PF13344 Haloacid dehalogenase-like hydrolase IUJ52_02035 PF00293 NUDIX domain IUJ52_02045 PF00376 MerR family regulatory protein IUJ52_02045 PF09278 MerR, DNA binding IUJ52_02055 PF02698 DUF218 domain IUJ52_02085 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_02090 PF00005 ABC transporter IUJ52_02090 PF00664 ABC transporter transmembrane region IUJ52_02095 PF00005 ABC transporter IUJ52_02095 PF00664 ABC transporter transmembrane region IUJ52_02110 PF01479 S4 domain IUJ52_02110 PF00849 RNA pseudouridylate synthase IUJ52_02115 PF01300 Telomere recombination IUJ52_02120 PF02838 Glycosyl hydrolase family 20, domain 2 IUJ52_02120 PF00728 Glycosyl hydrolase family 20, catalytic domain IUJ52_02125 PF01081 KDPG and KHG aldolase IUJ52_02130 PF00294 pfkB family carbohydrate kinase IUJ52_02135 PF00474 Sodium:solute symporter family IUJ52_02145 PF07969 Amidohydrolase family IUJ52_02155 PF02685 Glucokinase IUJ52_02155 PF01418 Helix-turn-helix domain, rpiR family IUJ52_02155 PF01380 SIS domain IUJ52_02160 PF02811 PHP domain IUJ52_02170 PF00425 chorismate binding enzyme IUJ52_02170 PF04715 Anthranilate synthase component I, N terminal region IUJ52_02175 PF00117 Glutamine amidotransferase class-I IUJ52_02180 PF00591 Glycosyl transferase family, a/b domain IUJ52_02180 PF02885 Glycosyl transferase family, helical bundle domain IUJ52_02185 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IUJ52_02185 PF00218 Indole-3-glycerol phosphate synthase IUJ52_02190 PF00291 Pyridoxal-phosphate dependent enzyme IUJ52_02195 PF00290 Tryptophan synthase alpha chain IUJ52_02200 PF00375 Sodium:dicarboxylate symporter family IUJ52_02205 PF04279 Intracellular septation protein A IUJ52_02210 PF03061 Thioesterase superfamily IUJ52_02215 PF03795 YCII-related domain IUJ52_02225 PF00672 HAMP domain IUJ52_02225 PF02743 Cache domain IUJ52_02225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_02230 PF01717 Cobalamin-independent synthase, Catalytic domain IUJ52_02230 PF08267 Cobalamin-independent synthase, N-terminal domain IUJ52_02240 PF13677 Membrane MotB of proton-channel complex MotA/MotB IUJ52_02240 PF00691 OmpA family IUJ52_02245 PF01618 MotA/TolQ/ExbB proton channel family IUJ52_02250 PF04539 Sigma-70 region 3 IUJ52_02250 PF04542 Sigma-70 region 2 IUJ52_02250 PF04545 Sigma-70, region 4 IUJ52_02280 PF07196 Flagellin hook IN motif IUJ52_02280 PF07195 Flagellar hook-associated protein 2 C-terminus IUJ52_02280 PF02465 Flagellar hook-associated protein 2 N-terminus IUJ52_02285 PF00700 Bacterial flagellin C-terminal helical region IUJ52_02285 PF00669 Bacterial flagellin N-terminal helical region IUJ52_02290 PF00700 Bacterial flagellin C-terminal helical region IUJ52_02290 PF00669 Bacterial flagellin N-terminal helical region IUJ52_02295 PF00700 Bacterial flagellin C-terminal helical region IUJ52_02295 PF00669 Bacterial flagellin N-terminal helical region IUJ52_02300 PF00771 FHIPEP family IUJ52_02325 PF14842 FliG N-terminal domain IUJ52_02325 PF14841 FliG middle domain IUJ52_02325 PF01706 FliG C-terminal domain IUJ52_02330 PF08345 Flagellar M-ring protein C-terminal IUJ52_02330 PF01514 Secretory protein of YscJ/FliF family IUJ52_02335 PF02049 Flagellar hook-basal body complex protein FliE IUJ52_02360 PF02119 Flagellar P-ring protein IUJ52_02365 PF02107 Flagellar L-ring protein IUJ52_02370 PF00460 Flagella basal body rod protein IUJ52_02370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_02375 PF00460 Flagella basal body rod protein IUJ52_02375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_02380 PF00460 Flagella basal body rod protein IUJ52_02380 PF07559 Flagellar basal body protein FlaE IUJ52_02380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_02385 PF13861 FlgD Tudor-like domain IUJ52_02385 PF13860 FlgD Ig-like domain IUJ52_02385 PF03963 Flagellar hook capping protein - N-terminal region IUJ52_02390 PF00460 Flagella basal body rod protein IUJ52_02390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_02395 PF00460 Flagella basal body rod protein IUJ52_02405 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IUJ52_02410 PF00813 FliP family IUJ52_02415 PF01313 Bacterial export proteins, family 3 IUJ52_02420 PF01311 Bacterial export proteins, family 1 IUJ52_02425 PF01312 FlhB HrpN YscU SpaS Family IUJ52_02435 PF06406 StbA protein IUJ52_02440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_02440 PF03466 LysR substrate binding domain IUJ52_02455 PF05193 Peptidase M16 inactive domain IUJ52_02455 PF00675 Insulinase (Peptidase family M16) IUJ52_02470 PF00196 Bacterial regulatory proteins, luxR family IUJ52_02470 PF00563 EAL domain IUJ52_02475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_02475 PF12729 Four helix bundle sensory module for signal transduction IUJ52_02475 PF00672 HAMP domain IUJ52_02490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ52_02495 PF03358 NADPH-dependent FMN reductase IUJ52_02500 PF12848 ABC transporter IUJ52_02500 PF00005 ABC transporter IUJ52_02505 PF04055 Radical SAM superfamily IUJ52_02505 PF11842 Domain of unknown function (DUF3362) IUJ52_02505 PF08497 Radical SAM N-terminal IUJ52_02515 PF04616 Glycosyl hydrolases family 43 IUJ52_02515 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain IUJ52_02520 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ52_02520 PF12464 Maltose acetyltransferase IUJ52_02520 PF14602 Hexapeptide repeat of succinyl-transferase IUJ52_02530 PF00890 FAD binding domain IUJ52_02535 PF00266 Aminotransferase class-V IUJ52_02545 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ52_02545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_02545 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_02560 PF04994 TfoX C-terminal domain IUJ52_02560 PF04993 TfoX N-terminal domain IUJ52_02570 PF03956 Lysine exporter LysO IUJ52_02580 PF00282 Pyridoxal-dependent decarboxylase conserved domain IUJ52_02585 PF01418 Helix-turn-helix domain, rpiR family IUJ52_02585 PF01380 SIS domain IUJ52_02590 PF00465 Iron-containing alcohol dehydrogenase IUJ52_02595 PF00462 Glutaredoxin IUJ52_02600 PF06826 Predicted Permease Membrane Region IUJ52_02600 PF02080 TrkA-C domain IUJ52_02605 PF07055 Enoyl reductase FAD binding domain IUJ52_02605 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IUJ52_02605 PF12241 Trans-2-enoyl-CoA reductase catalytic region IUJ52_02610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ52_02610 PF09317 Domain of unknown function (DUF1974) IUJ52_02610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ52_02610 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ52_02615 PF16295 Tetracyclin repressor-like, C-terminal domain IUJ52_02615 PF00440 Bacterial regulatory proteins, tetR family IUJ52_02630 PF00171 Aldehyde dehydrogenase family IUJ52_02640 PF07670 Nucleoside recognition IUJ52_02645 PF07670 Nucleoside recognition IUJ52_02655 PF01116 Fructose-bisphosphate aldolase class-II IUJ52_02660 PF01979 Amidohydrolase family IUJ52_02665 PF03610 PTS system fructose IIA component IUJ52_02670 PF03613 PTS system mannose/fructose/sorbose family IID component IUJ52_02675 PF03609 PTS system sorbose-specific iic component IUJ52_02680 PF03830 PTS system sorbose subfamily IIB component IUJ52_02685 PF01380 SIS domain IUJ52_02690 PF08013 Tagatose 6 phosphate kinase IUJ52_02695 PF08220 DeoR-like helix-turn-helix domain IUJ52_02695 PF00455 DeoR C terminal sensor domain IUJ52_02700 PF00455 DeoR C terminal sensor domain IUJ52_02700 PF08220 DeoR-like helix-turn-helix domain IUJ52_02720 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IUJ52_02820 PF13356 Arm DNA-binding domain IUJ52_02820 PF00589 Phage integrase family IUJ52_02830 PF06610 L-alanine exporter IUJ52_02835 PF00072 Response regulator receiver domain IUJ52_02835 PF09308 LuxQ, periplasmic IUJ52_02835 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_02835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_02845 PF02445 Quinolinate synthetase A protein IUJ52_02850 PF16331 TolA binding protein trimerisation IUJ52_02850 PF13174 Tetratricopeptide repeat IUJ52_02855 PF00691 OmpA family IUJ52_02860 PF04052 TolB amino-terminal domain IUJ52_02860 PF07676 WD40-like Beta Propeller Repeat IUJ52_02870 PF02472 Biopolymer transport protein ExbD/TolR IUJ52_02875 PF01618 MotA/TolQ/ExbB proton channel family IUJ52_02880 PF03061 Thioesterase superfamily IUJ52_02890 PF08173 Membrane bound YbgT-like protein IUJ52_02895 PF02322 Cytochrome bd terminal oxidase subunit II IUJ52_02900 PF01654 Cytochrome bd terminal oxidase subunit I IUJ52_02905 PF05491 RuvB C-terminal winged helix domain IUJ52_02905 PF05496 Holliday junction DNA helicase RuvB P-loop domain IUJ52_02905 PF17864 RuvB AAA lid domain IUJ52_02910 PF07499 RuvA, C-terminal domain IUJ52_02910 PF01330 RuvA N terminal domain IUJ52_02915 PF02075 Crossover junction endodeoxyribonuclease RuvC IUJ52_02920 PF09190 DALR domain IUJ52_02920 PF01406 tRNA synthetases class I (C) catalytic domain IUJ52_02925 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IUJ52_02930 PF00149 Calcineurin-like phosphoesterase IUJ52_02935 PF08668 HDOD domain IUJ52_02935 PF00563 EAL domain IUJ52_02940 PF02810 SEC-C motif IUJ52_02945 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IUJ52_02950 PF13609 Gram-negative porin IUJ52_02955 PF06733 DEAD_2 IUJ52_02955 PF13307 Helicase C-terminal domain IUJ52_02960 PF07445 Primosomal replication protein priC IUJ52_02965 PF10689 Protein of unknown function (DUF2496) IUJ52_02970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_02970 PF02743 Cache domain IUJ52_02970 PF00672 HAMP domain IUJ52_02975 PF03372 Endonuclease/Exonuclease/phosphatase family IUJ52_02980 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_02985 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_02990 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ52_02995 PF00005 ABC transporter IUJ52_03005 PF01228 Glycine radical IUJ52_03005 PF02901 Pyruvate formate lyase-like IUJ52_03015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_03015 PF00672 HAMP domain IUJ52_03020 PF04055 Radical SAM superfamily IUJ52_03030 PF03887 YfbU domain IUJ52_03035 PF06629 MltA-interacting protein MipA IUJ52_03040 PF06798 PrkA serine protein kinase C-terminal domain IUJ52_03040 PF08298 PrkA AAA domain IUJ52_03045 PF04285 Protein of unknown function (DUF444) IUJ52_03050 PF04293 SpoVR like protein IUJ52_03055 PF02348 Cytidylyltransferase IUJ52_03060 PF03966 Trm112p-like protein IUJ52_03065 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IUJ52_03070 PF00005 ABC transporter IUJ52_03070 PF00664 ABC transporter transmembrane region IUJ52_03075 PF13567 Domain of unknown function (DUF4131) IUJ52_03075 PF03772 Competence protein IUJ52_03075 PF00753 Metallo-beta-lactamase superfamily IUJ52_03085 PF12704 MacB-like periplasmic core domain IUJ52_03085 PF02687 FtsX-like permease family IUJ52_03090 PF00005 ABC transporter IUJ52_03095 PF12704 MacB-like periplasmic core domain IUJ52_03095 PF02687 FtsX-like permease family IUJ52_03105 PF02559 CarD-like/TRCF domain IUJ52_03105 PF00270 DEAD/DEAH box helicase IUJ52_03105 PF17757 UvrB interaction domain IUJ52_03105 PF00271 Helicase conserved C-terminal domain IUJ52_03105 PF03461 TRCF domain IUJ52_03115 PF13302 Acetyltransferase (GNAT) domain IUJ52_03120 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_03125 PF05728 Uncharacterised protein family (UPF0227) IUJ52_03135 PF08139 Prokaryotic membrane lipoprotein lipid attachment site IUJ52_03135 PF13036 Peptidoglycan-synthase activator LpoB IUJ52_03150 PF01230 HIT domain IUJ52_03155 PF00672 HAMP domain IUJ52_03155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_03165 PF07840 FadR C-terminal domain IUJ52_03165 PF00392 Bacterial regulatory proteins, gntR family IUJ52_03170 PF06450 Bacterial Na+/H+ antiporter B (NhaB) IUJ52_03175 PF02600 Disulfide bond formation protein DsbB IUJ52_03180 PF01580 FtsK/SpoIIIE family IUJ52_03180 PF09397 Ftsk gamma domain IUJ52_03180 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IUJ52_03180 PF17854 FtsK alpha domain IUJ52_03185 PF01037 Lrp/AsnC ligand binding domain IUJ52_03190 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IUJ52_03190 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IUJ52_03200 PF03466 LysR substrate binding domain IUJ52_03200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_03210 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) IUJ52_03215 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IUJ52_03220 PF18073 Rubredoxin metal binding domain IUJ52_03225 PF06305 Lipopolysaccharide assembly protein A domain IUJ52_03230 PF00216 Bacterial DNA-binding protein IUJ52_03235 PF00575 S1 RNA binding domain IUJ52_03240 PF02224 Cytidylate kinase IUJ52_03250 PF13145 PPIC-type PPIASE domain IUJ52_03255 PF00216 Bacterial DNA-binding protein IUJ52_03260 PF00004 ATPase family associated with various cellular activities (AAA) IUJ52_03260 PF05362 Lon protease (S16) C-terminal proteolytic domain IUJ52_03260 PF02190 ATP-dependent protease La (LON) substrate-binding domain IUJ52_03265 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ52_03265 PF06689 ClpX C4-type zinc finger IUJ52_03265 PF07724 AAA domain (Cdc48 subfamily) IUJ52_03270 PF00574 Clp protease IUJ52_03275 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUJ52_03275 PF05697 Bacterial trigger factor protein (TF) IUJ52_03275 PF05698 Bacterial trigger factor protein (TF) C-terminus IUJ52_03285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_03285 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_03290 PF02954 Bacterial regulatory protein, Fis family IUJ52_03290 PF00072 Response regulator receiver domain IUJ52_03290 PF00158 Sigma-54 interaction domain IUJ52_03295 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ52_03300 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IUJ52_03305 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ52_03310 PF00082 Subtilase family IUJ52_03315 PF01547 Bacterial extracellular solute-binding protein IUJ52_03320 PF00672 HAMP domain IUJ52_03320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_03320 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_03325 PF00072 Response regulator receiver domain IUJ52_03325 PF00486 Transcriptional regulatory protein, C terminal IUJ52_03330 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IUJ52_03335 PF03315 Serine dehydratase beta chain IUJ52_03335 PF03313 Serine dehydratase alpha chain IUJ52_03345 PF00583 Acetyltransferase (GNAT) family IUJ52_03345 PF00795 Carbon-nitrogen hydrolase IUJ52_03355 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_03355 PF00563 EAL domain IUJ52_03355 PF13188 PAS domain IUJ52_03355 PF03707 Bacterial signalling protein N terminal repeat IUJ52_03375 PF00970 Oxidoreductase FAD-binding domain IUJ52_03375 PF00175 Oxidoreductase NAD-binding domain IUJ52_03400 PF12008 Type I restriction and modification enzyme - subunit R C terminal IUJ52_03400 PF18766 SWI2/SNF2 ATPase IUJ52_03400 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IUJ52_03405 PF01420 Type I restriction modification DNA specificity domain IUJ52_03410 PF12161 HsdM N-terminal domain IUJ52_03410 PF02384 N-6 DNA Methylase IUJ52_03420 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IUJ52_03420 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IUJ52_03425 PF01773 Na+ dependent nucleoside transporter N-terminus IUJ52_03425 PF07670 Nucleoside recognition IUJ52_03425 PF07662 Na+ dependent nucleoside transporter C-terminus IUJ52_03430 PF03466 LysR substrate binding domain IUJ52_03430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_03435 PF13406 Transglycosylase SLT domain IUJ52_03440 PF05166 YcgL domain IUJ52_03445 PF05209 Septum formation inhibitor MinC, N-terminal domain IUJ52_03445 PF03775 Septum formation inhibitor MinC, C-terminal domain IUJ52_03450 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IUJ52_03455 PF03776 Septum formation topological specificity factor MinE IUJ52_03465 PF00570 HRDC domain IUJ52_03465 PF01612 3'-5' exonuclease IUJ52_03470 PF13193 AMP-binding enzyme C-terminal domain IUJ52_03470 PF00501 AMP-binding enzyme IUJ52_03475 PF00561 alpha/beta hydrolase fold IUJ52_03490 PF00814 Glycoprotease family IUJ52_03495 PF13307 Helicase C-terminal domain IUJ52_03495 PF04851 Type III restriction enzyme, res subunit IUJ52_03505 PF00551 Formyl transferase IUJ52_03505 PF01842 ACT domain IUJ52_03510 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ52_03510 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_03515 PF01343 Peptidase family S49 IUJ52_03520 PF00710 Asparaginase, N-terminal IUJ52_03520 PF17763 Glutaminase/Asparaginase C-terminal domain IUJ52_03525 PF07023 Protein of unknown function (DUF1315) IUJ52_03535 PF01641 SelR domain IUJ52_03540 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IUJ52_03540 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IUJ52_03545 PF01263 Aldose 1-epimerase IUJ52_03550 PF13847 Methyltransferase domain IUJ52_03565 PF03692 Putative zinc- or iron-chelating domain IUJ52_03570 PF03692 Putative zinc- or iron-chelating domain IUJ52_03575 PF00230 Major intrinsic protein IUJ52_03580 PF02132 RecR protein IUJ52_03580 PF13662 Toprim domain IUJ52_03585 PF02575 YbaB/EbfC DNA-binding family IUJ52_03590 PF12170 DNA polymerase III tau subunit V interacting with alpha IUJ52_03590 PF12169 DNA polymerase III subunits gamma and tau domain III IUJ52_03590 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IUJ52_03595 PF00156 Phosphoribosyl transferase domain IUJ52_03600 PF04304 Protein of unknown function (DUF454) IUJ52_03605 PF00072 Response regulator receiver domain IUJ52_03610 PF03466 LysR substrate binding domain IUJ52_03610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_03615 PF00881 Nitroreductase family IUJ52_03620 PF00378 Enoyl-CoA hydratase/isomerase IUJ52_03620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ52_03620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ52_03625 PF02803 Thiolase, C-terminal domain IUJ52_03625 PF00108 Thiolase, N-terminal domain IUJ52_03630 PF08281 Sigma-70, region 4 IUJ52_03630 PF04542 Sigma-70 region 2 IUJ52_03640 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IUJ52_03645 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IUJ52_03650 PF01451 Low molecular weight phosphotyrosine protein phosphatase IUJ52_03660 PF13426 PAS domain IUJ52_03660 PF08447 PAS fold IUJ52_03660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_03665 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IUJ52_03665 PF12557 Cob(I)alamin adenosyltransferase N terminal IUJ52_03670 PF05170 AsmA family IUJ52_03675 PF00485 Phosphoribulokinase / Uridine kinase family IUJ52_03680 PF10609 NUBPL iron-transfer P-loop NTPase IUJ52_03685 PF09334 tRNA synthetases class I (M) IUJ52_03685 PF01588 Putative tRNA binding domain IUJ52_03695 PF01048 Phosphorylase superfamily IUJ52_03700 PF00403 Heavy-metal-associated domain IUJ52_03705 PF01743 Poly A polymerase head domain IUJ52_03705 PF02272 DHHA1 domain IUJ52_03705 PF01368 DHH family IUJ52_03705 PF00571 CBS domain IUJ52_03710 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_03710 PF08448 PAS fold IUJ52_03715 PF02391 MoaE protein IUJ52_03720 PF02597 ThiS family IUJ52_03725 PF01967 MoaC family IUJ52_03730 PF00994 Probable molybdopterin binding domain IUJ52_03735 PF06463 Molybdenum Cofactor Synthesis C IUJ52_03735 PF04055 Radical SAM superfamily IUJ52_03740 PF01933 Uncharacterised protein family UPF0052 IUJ52_03745 PF01627 Hpt domain IUJ52_03750 PF00158 Sigma-54 interaction domain IUJ52_03750 PF00072 Response regulator receiver domain IUJ52_03750 PF02954 Bacterial regulatory protein, Fis family IUJ52_03755 PF00271 Helicase conserved C-terminal domain IUJ52_03755 PF12344 Ultra-violet resistance protein B IUJ52_03755 PF02151 UvrB/uvrC motif IUJ52_03755 PF04851 Type III restriction enzyme, res subunit IUJ52_03755 PF17757 UvrB interaction domain IUJ52_03765 PF01228 Glycine radical IUJ52_03765 PF02901 Pyruvate formate lyase-like IUJ52_03770 PF02508 Rnf-Nqr subunit, membrane protein IUJ52_03775 PF04060 Putative Fe-S cluster IUJ52_03780 PF13375 RnfC Barrel sandwich hybrid domain IUJ52_03780 PF12838 4Fe-4S dicluster domain IUJ52_03780 PF10531 SLBB domain IUJ52_03780 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IUJ52_03785 PF03116 NQR2, RnfD, RnfE family IUJ52_03790 PF04205 FMN-binding domain IUJ52_03795 PF02508 Rnf-Nqr subunit, membrane protein IUJ52_03800 PF00730 HhH-GPD superfamily base excision DNA repair protein IUJ52_03800 PF00633 Helix-hairpin-helix motif IUJ52_03800 PF10576 Iron-sulfur binding domain of endonuclease III IUJ52_03805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ52_03810 PF10952 Protein of unknown function (DUF2753) IUJ52_03815 PF18393 MotY N-terminal domain IUJ52_03815 PF00691 OmpA family IUJ52_03820 PF00929 Exonuclease IUJ52_03825 PF13726 Na+-H+ antiporter family IUJ52_03825 PF03553 Na+/H+ antiporter family IUJ52_03830 PF00156 Phosphoribosyl transferase domain IUJ52_03835 PF02674 Colicin V production protein IUJ52_03840 PF05036 Sporulation related domain IUJ52_03845 PF02875 Mur ligase family, glutamate ligase domain IUJ52_03845 PF08245 Mur ligase middle domain IUJ52_03850 PF01039 Carboxyl transferase domain IUJ52_03850 PF17848 Acetyl-coA carboxylase zinc finger domain IUJ52_03855 PF01416 tRNA pseudouridine synthase IUJ52_03865 PF00749 tRNA synthetases class I (E and Q), catalytic domain IUJ52_03865 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IUJ52_03870 PF02378 Phosphotransferase system, EIIC IUJ52_03870 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IUJ52_03870 PF00367 phosphotransferase system, EIIB IUJ52_03875 PF01979 Amidohydrolase family IUJ52_03880 PF01047 MarR family IUJ52_03880 PF00480 ROK family IUJ52_03885 PF00999 Sodium/hydrogen exchanger family IUJ52_03885 PF02254 TrkA-N domain IUJ52_03890 PF13537 Glutamine amidotransferase domain IUJ52_03890 PF00733 Asparagine synthase IUJ52_03895 PF02357 Transcription termination factor nusG IUJ52_03900 PF00854 POT family IUJ52_03905 PF00762 Ferrochelatase IUJ52_03910 PF05191 Adenylate kinase, active site lid IUJ52_03915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_03915 PF00183 Hsp90 protein IUJ52_03920 PF00486 Transcriptional regulatory protein, C terminal IUJ52_03925 PF17323 Trans-membrane regulatory protein ToxS IUJ52_03935 PF12850 Calcineurin-like phosphoesterase superfamily domain IUJ52_03950 PF07556 Protein of unknown function (DUF1538) IUJ52_03955 PF07556 Protein of unknown function (DUF1538) IUJ52_03960 PF08338 Domain of unknown function (DUF1731) IUJ52_03960 PF01370 NAD dependent epimerase/dehydratase family IUJ52_03965 PF00106 short chain dehydrogenase IUJ52_03970 PF00085 Thioredoxin IUJ52_03975 PF16200 C-terminal region of band_7 IUJ52_03975 PF01145 SPFH domain / Band 7 family IUJ52_03985 PF13411 MerR HTH family regulatory protein IUJ52_03995 PF13609 Gram-negative porin IUJ52_04000 PF00533 BRCA1 C Terminus (BRCT) domain IUJ52_04000 PF01653 NAD-dependent DNA ligase adenylation domain IUJ52_04000 PF03120 NAD-dependent DNA ligase OB-fold domain IUJ52_04000 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IUJ52_04000 PF12826 Helix-hairpin-helix motif IUJ52_04005 PF04354 ZipA, C-terminal FtsZ-binding domain IUJ52_04015 PF00291 Pyridoxal-phosphate dependent enzyme IUJ52_04020 PF00381 PTS HPr component phosphorylation site IUJ52_04025 PF02896 PEP-utilising enzyme, TIM barrel domain IUJ52_04025 PF05524 PEP-utilising enzyme, N-terminal IUJ52_04025 PF00391 PEP-utilising enzyme, mobile domain IUJ52_04030 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IUJ52_04035 PF01494 FAD binding domain IUJ52_04040 PF04055 Radical SAM superfamily IUJ52_04040 PF00919 Uncharacterized protein family UPF0004 IUJ52_04040 PF01938 TRAM domain IUJ52_04045 PF02562 PhoH-like protein IUJ52_04050 PF02130 Uncharacterized protein family UPF0054 IUJ52_04055 PF00571 CBS domain IUJ52_04055 PF03471 Transporter associated domain IUJ52_04060 PF00795 Carbon-nitrogen hydrolase IUJ52_04065 PF07295 Zinc-ribbon containing domain IUJ52_04070 PF00133 tRNA synthetases class I (I, L, M and V) IUJ52_04070 PF13603 Leucyl-tRNA synthetase, Domain 2 IUJ52_04070 PF08264 Anticodon-binding domain of tRNA IUJ52_04075 PF04390 Lipopolysaccharide-assembly IUJ52_04080 PF14840 Processivity clamp loader gamma complex DNA pol III C-term IUJ52_04080 PF06144 DNA polymerase III, delta subunit IUJ52_04090 PF02590 Predicted SPOUT methyltransferase IUJ52_04095 PF00905 Penicillin binding protein transpeptidase domain IUJ52_04095 PF03717 Penicillin-binding Protein dimerisation domain IUJ52_04100 PF01098 Cell cycle protein IUJ52_04105 PF05036 Sporulation related domain IUJ52_04105 PF03330 Lytic transglycolase IUJ52_04110 PF07943 Penicillin-binding protein 5, C-terminal domain IUJ52_04110 PF00768 D-alanyl-D-alanine carboxypeptidase IUJ52_04115 PF04359 Protein of unknown function (DUF493) IUJ52_04120 PF03099 Biotin/lipoate A/B protein ligase family IUJ52_04125 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family IUJ52_04125 PF04055 Radical SAM superfamily IUJ52_04135 PF00464 Serine hydroxymethyltransferase IUJ52_04145 PF00873 AcrB/AcrD/AcrF family IUJ52_04150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_04175 PF00128 Alpha amylase, catalytic domain IUJ52_04175 PF16657 Maltogenic Amylase, C-terminal domain IUJ52_04180 PF00367 phosphotransferase system, EIIB IUJ52_04180 PF02378 Phosphotransferase system, EIIC IUJ52_04185 PF00356 Bacterial regulatory proteins, lacI family IUJ52_04200 PF00005 ABC transporter IUJ52_04200 PF09383 NIL domain IUJ52_04205 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_04210 PF03180 NLPA lipoprotein IUJ52_04215 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) IUJ52_04220 PF07348 Syd protein (SUKH-2) IUJ52_04225 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IUJ52_04225 PF14489 QueF-like protein IUJ52_04235 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_04240 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases IUJ52_04240 PF11892 Domain of unknown function (DUF3412) IUJ52_04240 PF03641 Possible lysine decarboxylase IUJ52_04245 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IUJ52_04245 PF01367 5'-3' exonuclease, C-terminal SAM fold IUJ52_04250 PF18125 RlmM ferredoxin-like domain IUJ52_04250 PF01728 FtsJ-like methyltransferase IUJ52_04255 PF04241 Protein of unknown function (DUF423) IUJ52_04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_04265 PF03466 LysR substrate binding domain IUJ52_04270 PF02926 THUMP domain IUJ52_04270 PF02568 Thiamine biosynthesis protein (ThiI) IUJ52_04275 PF13677 Membrane MotB of proton-channel complex MotA/MotB IUJ52_04275 PF00691 OmpA family IUJ52_04280 PF01618 MotA/TolQ/ExbB proton channel family IUJ52_04285 PF02609 Exonuclease VII small subunit IUJ52_04290 PF00348 Polyprenyl synthetase IUJ52_04295 PF02779 Transketolase, pyrimidine binding domain IUJ52_04295 PF02780 Transketolase, C-terminal domain IUJ52_04295 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IUJ52_04300 PF00849 RNA pseudouridylate synthase IUJ52_04305 PF04287 tRNA pseudouridine synthase C IUJ52_04330 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IUJ52_04335 PF03806 AbgT putative transporter family IUJ52_04340 PF00444 Ribosomal protein L36 IUJ52_04345 PF01197 Ribosomal protein L31 IUJ52_04350 PF01980 tRNA-methyltransferase O IUJ52_04350 PF18389 TrmO C-terminal domain IUJ52_04355 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IUJ52_04355 PF03129 Anticodon binding domain IUJ52_04355 PF04073 Aminoacyl-tRNA editing domain IUJ52_04365 PF06786 Uncharacterised protein family (UPF0253) IUJ52_04375 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IUJ52_04375 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IUJ52_04375 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_04380 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal IUJ52_04380 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IUJ52_04380 PF02769 AIR synthase related protein, C-terminal domain IUJ52_04385 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ52_04385 PF01464 Transglycosylase SLT domain IUJ52_04390 PF14437 MafB19-like deaminase IUJ52_04395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_04395 PF03466 LysR substrate binding domain IUJ52_04400 PF08240 Alcohol dehydrogenase GroES-like domain IUJ52_04400 PF00107 Zinc-binding dehydrogenase IUJ52_04405 PF00756 Putative esterase IUJ52_04410 PF03806 AbgT putative transporter family IUJ52_04435 PF07963 Prokaryotic N-terminal methylation motif IUJ52_04435 PF00114 Pilin (bacterial filament) IUJ52_04440 PF00226 DnaJ domain IUJ52_04440 PF00684 DnaJ central domain IUJ52_04440 PF01556 DnaJ C terminal domain IUJ52_04445 PF00012 Hsp70 protein IUJ52_04450 PF00375 Sodium:dicarboxylate symporter family IUJ52_04455 PF01025 GrpE IUJ52_04460 PF01513 ATP-NAD kinase IUJ52_04465 PF02463 RecF/RecN/SMC N terminal domain IUJ52_04470 PF04355 SmpA / OmlA family IUJ52_04475 PF03658 RnfH family Ubiquitin IUJ52_04480 PF03364 Polyketide cyclase / dehydrase and lipid transport IUJ52_04485 PF01668 SmpB protein IUJ52_04495 PF13091 PLD-like domain IUJ52_04495 PF13087 AAA domain IUJ52_04505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_04505 PF03466 LysR substrate binding domain IUJ52_04510 PF01266 FAD dependent oxidoreductase IUJ52_04520 PF01235 Sodium:alanine symporter family IUJ52_04525 PF01758 Sodium Bile acid symporter family IUJ52_04545 PF02753 Pili assembly chaperone PapD, C-terminal domain IUJ52_04545 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IUJ52_04550 PF13953 PapC C-terminal domain IUJ52_04550 PF00577 Outer membrane usher protein IUJ52_04550 PF13954 PapC N-terminal domain IUJ52_04555 PF00419 Fimbrial protein IUJ52_04560 PF00486 Transcriptional regulatory protein, C terminal IUJ52_04565 PF01184 GPR1/FUN34/yaaH family IUJ52_04580 PF00128 Alpha amylase, catalytic domain IUJ52_04580 PF02903 Alpha amylase, N-terminal ig-like domain IUJ52_04580 PF16657 Maltogenic Amylase, C-terminal domain IUJ52_04585 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_04590 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_04595 PF13416 Bacterial extracellular solute-binding protein IUJ52_04605 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ52_04605 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IUJ52_04615 PF00005 ABC transporter IUJ52_04615 PF17912 MalK OB fold domain IUJ52_04615 PF03459 TOBE domain IUJ52_04620 PF00128 Alpha amylase, catalytic domain IUJ52_04620 PF00686 Starch binding domain IUJ52_04645 PF03432 Relaxase/Mobilisation nuclease domain IUJ52_04645 PF18821 Large polyvalent protein-associated domain 7 IUJ52_04670 PF02254 TrkA-N domain IUJ52_04670 PF00999 Sodium/hydrogen exchanger family IUJ52_04675 PF00582 Universal stress protein family IUJ52_04690 PF00196 Bacterial regulatory proteins, luxR family IUJ52_04690 PF17874 MalT-like TPR region IUJ52_04710 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_04710 PF01590 GAF domain IUJ52_04710 PF00563 EAL domain IUJ52_04710 PF00360 Phytochrome region IUJ52_04735 PF00589 Phage integrase family IUJ52_04735 PF13356 Arm DNA-binding domain IUJ52_04740 PF00117 Glutamine amidotransferase class-I IUJ52_04740 PF00958 GMP synthase C terminal domain IUJ52_04740 PF02540 NAD synthase IUJ52_04745 PF00571 CBS domain IUJ52_04745 PF00478 IMP dehydrogenase / GMP reductase domain IUJ52_04750 PF13742 OB-fold nucleic acid binding domain IUJ52_04750 PF02601 Exonuclease VII, large subunit IUJ52_04765 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IUJ52_04765 PF01926 50S ribosome-binding GTPase IUJ52_04770 PF13360 PQQ-like domain IUJ52_04775 PF09976 Tetratricopeptide repeat-like domain IUJ52_04780 PF03129 Anticodon binding domain IUJ52_04780 PF13393 Histidyl-tRNA synthetase IUJ52_04785 PF04551 GcpE protein IUJ52_04790 PF13464 Domain of unknown function (DUF4115) IUJ52_04795 PF04055 Radical SAM superfamily IUJ52_04800 PF00334 Nucleoside diphosphate kinase IUJ52_04805 PF12404 Peptidase IUJ52_04805 PF00883 Cytosol aminopeptidase family, catalytic domain IUJ52_04810 PF04384 Iron-sulphur cluster assembly IUJ52_04815 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ52_04820 PF00012 Hsp70 protein IUJ52_04825 PF00226 DnaJ domain IUJ52_04825 PF07743 HSCB C-terminal oligomerisation domain IUJ52_04830 PF01521 Iron-sulphur cluster biosynthesis IUJ52_04835 PF01592 NifU-like N terminal domain IUJ52_04840 PF00266 Aminotransferase class-V IUJ52_04845 PF02082 Transcriptional regulator IUJ52_04850 PF00588 SpoU rRNA Methylase family IUJ52_04855 PF00459 Inositol monophosphatase family IUJ52_04860 PF00857 Isochorismatase family IUJ52_04865 PF07549 SecD/SecF GG Motif IUJ52_04865 PF02355 Protein export membrane protein IUJ52_04870 PF07549 SecD/SecF GG Motif IUJ52_04870 PF02355 Protein export membrane protein IUJ52_04870 PF13721 SecD export protein N-terminal TM region IUJ52_04875 PF02699 Preprotein translocase subunit IUJ52_04880 PF01702 Queuine tRNA-ribosyltransferase IUJ52_04885 PF02547 Queuosine biosynthesis protein IUJ52_04890 PF00571 CBS domain IUJ52_04895 PF00672 HAMP domain IUJ52_04895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_04900 PF00463 Isocitrate lyase family IUJ52_04905 PF01274 Malate synthase IUJ52_04910 PF03466 LysR substrate binding domain IUJ52_04910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_04915 PF10417 C-terminal domain of 1-Cys peroxiredoxin IUJ52_04915 PF00578 AhpC/TSA family IUJ52_04920 PF03932 CutC family IUJ52_04925 PF03976 Polyphosphate kinase 2 (PPK2) IUJ52_04930 PF01895 PhoU domain IUJ52_04935 PF00005 ABC transporter IUJ52_04940 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_04945 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_04950 PF13089 Polyphosphate kinase N-terminal domain IUJ52_04950 PF17941 Polyphosphate kinase C-terminal domain 1 IUJ52_04950 PF02503 Polyphosphate kinase middle domain IUJ52_04950 PF13090 Polyphosphate kinase C-terminal domain 2 IUJ52_04955 PF02541 Ppx/GppA phosphatase family IUJ52_04960 PF12849 PBP superfamily domain IUJ52_04965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_04965 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_04965 PF00989 PAS fold IUJ52_04965 PF11808 Phosphate regulon sensor protein PhoR IUJ52_04970 PF00072 Response regulator receiver domain IUJ52_04970 PF00486 Transcriptional regulatory protein, C terminal IUJ52_04975 PF04381 Putative exonuclease, RdgC IUJ52_04980 PF01136 Peptidase family U32 IUJ52_04980 PF16325 Peptidase family U32 C-terminal domain IUJ52_04985 PF12838 4Fe-4S dicluster domain IUJ52_04990 PF07690 Major Facilitator Superfamily IUJ52_05000 PF04545 Sigma-70, region 4 IUJ52_05000 PF04542 Sigma-70 region 2 IUJ52_05010 PF03502 Nucleoside-specific channel-forming protein, Tsx IUJ52_05015 PF02558 Ketopantoate reductase PanE/ApbA IUJ52_05015 PF08546 Ketopantoate reductase PanE/ApbA C terminal IUJ52_05020 PF01965 DJ-1/PfpI family IUJ52_05025 PF00266 Aminotransferase class-V IUJ52_05030 PF02657 Fe-S metabolism associated domain IUJ52_05035 PF00899 ThiF family IUJ52_05040 PF06725 3D domain IUJ52_05040 PF03562 MltA specific insert domain IUJ52_05050 PF00696 Amino acid kinase family IUJ52_05050 PF00583 Acetyltransferase (GNAT) family IUJ52_05060 PF13538 UvrD-like helicase C-terminal domain IUJ52_05065 PF13361 UvrD-like helicase C-terminal domain IUJ52_05065 PF12705 PD-(D/E)XK nuclease superfamily IUJ52_05065 PF00580 UvrD/REP helicase N-terminal domain IUJ52_05070 PF17946 RecC C-terminal domain IUJ52_05080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_05080 PF03466 LysR substrate binding domain IUJ52_05085 PF07130 YebG protein IUJ52_05090 PF14602 Hexapeptide repeat of succinyl-transferase IUJ52_05090 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle IUJ52_05095 PF00962 Adenosine/AMP deaminase IUJ52_05105 PF00583 Acetyltransferase (GNAT) family IUJ52_05115 PF01544 CorA-like Mg2+ transporter protein IUJ52_05125 PF01588 Putative tRNA binding domain IUJ52_05130 PF01263 Aldose 1-epimerase IUJ52_05135 PF02417 Chromate transporter IUJ52_05140 PF00072 Response regulator receiver domain IUJ52_05160 PF00437 Type II/IV secretion system protein IUJ52_05190 PF04972 BON domain IUJ52_05190 PF13629 Pilus formation protein N terminal region IUJ52_05190 PF00263 Bacterial type II and III secretion system protein IUJ52_05215 PF02311 AraC-like ligand binding domain IUJ52_05215 PF12833 Helix-turn-helix domain IUJ52_05220 PF00501 AMP-binding enzyme IUJ52_05225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_05225 PF03466 LysR substrate binding domain IUJ52_05235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_05235 PF03466 LysR substrate binding domain IUJ52_05240 PF00679 Elongation factor G C-terminus IUJ52_05240 PF14492 Elongation Factor G, domain II IUJ52_05240 PF03764 Elongation factor G, domain IV IUJ52_05240 PF00009 Elongation factor Tu GTP binding domain IUJ52_05240 PF03144 Elongation factor Tu domain 2 IUJ52_05245 PF18073 Rubredoxin metal binding domain IUJ52_05255 PF18429 Domain of unknown function (DUF5609) IUJ52_05265 PF01048 Phosphorylase superfamily IUJ52_05270 PF01676 Metalloenzyme superfamily IUJ52_05275 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain IUJ52_05275 PF02885 Glycosyl transferase family, helical bundle domain IUJ52_05275 PF00591 Glycosyl transferase family, a/b domain IUJ52_05280 PF01791 DeoC/LacD family aldolase IUJ52_05290 PF07662 Na+ dependent nucleoside transporter C-terminus IUJ52_05290 PF07670 Nucleoside recognition IUJ52_05290 PF01773 Na+ dependent nucleoside transporter N-terminus IUJ52_05295 PF01026 TatD related DNase IUJ52_05305 PF03883 Peroxide stress protein YaaA IUJ52_05310 PF01235 Sodium:alanine symporter family IUJ52_05325 PF03167 Uracil DNA glycosylase superfamily IUJ52_05335 PF01261 Xylose isomerase-like TIM barrel IUJ52_05340 PF01228 Glycine radical IUJ52_05345 PF00291 Pyridoxal-phosphate dependent enzyme IUJ52_05345 PF14821 Threonine synthase N terminus IUJ52_05350 PF08544 GHMP kinases C terminal IUJ52_05350 PF00288 GHMP kinases N terminal domain IUJ52_05355 PF00696 Amino acid kinase family IUJ52_05355 PF01842 ACT domain IUJ52_05355 PF13840 ACT domain IUJ52_05355 PF03447 Homoserine dehydrogenase, NAD binding domain IUJ52_05355 PF00742 Homoserine dehydrogenase IUJ52_05365 PF03737 Aldolase/RraA IUJ52_05375 PF00072 Response regulator receiver domain IUJ52_05375 PF00486 Transcriptional regulatory protein, C terminal IUJ52_05385 PF01627 Hpt domain IUJ52_05385 PF00072 Response regulator receiver domain IUJ52_05385 PF00989 PAS fold IUJ52_05385 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_05385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_05385 PF18415 Histidine kinase receptor ArcB trans-membrane domain IUJ52_05390 PF01590 GAF domain IUJ52_05390 PF00563 EAL domain IUJ52_05390 PF00360 Phytochrome region IUJ52_05390 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_05395 PF16199 Radical_SAM C-terminal domain IUJ52_05395 PF04055 Radical SAM superfamily IUJ52_05400 PF01493 GXGXG motif IUJ52_05400 PF01645 Conserved region in glutamate synthase IUJ52_05400 PF04898 Glutamate synthase central domain IUJ52_05400 PF00310 Glutamine amidotransferases class-II IUJ52_05405 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IUJ52_05405 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_05410 PF04898 Glutamate synthase central domain IUJ52_05410 PF01493 GXGXG motif IUJ52_05410 PF01645 Conserved region in glutamate synthase IUJ52_05410 PF00310 Glutamine amidotransferases class-II IUJ52_05415 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_05415 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IUJ52_05425 PF01048 Phosphorylase superfamily IUJ52_05430 PF03186 CobD/Cbib protein IUJ52_05430 PF17113 Regulatory signalling modulator protein AmpE IUJ52_05435 PF01497 Periplasmic binding protein IUJ52_05440 PF03458 UPF0126 domain IUJ52_05460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_05460 PF03466 LysR substrate binding domain IUJ52_05465 PF01925 Sulfite exporter TauE/SafE IUJ52_05470 PF05870 Phenolic acid decarboxylase (PAD) IUJ52_05480 PF02142 MGS-like domain IUJ52_05480 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUJ52_05480 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IUJ52_05485 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IUJ52_05485 PF00117 Glutamine amidotransferase class-I IUJ52_05490 PF05173 Dihydrodipicolinate reductase, C-terminus IUJ52_05490 PF01113 Dihydrodipicolinate reductase, N-terminus IUJ52_05495 PF00293 NUDIX domain IUJ52_05500 PF07517 SecA DEAD-like domain IUJ52_05500 PF02810 SEC-C motif IUJ52_05500 PF01043 SecA preprotein cross-linking domain IUJ52_05500 PF07516 SecA Wing and Scaffold domain IUJ52_05510 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IUJ52_05515 PF00091 Tubulin/FtsZ family, GTPase domain IUJ52_05515 PF12327 FtsZ family, C-terminal domain IUJ52_05520 PF02491 SHS2 domain inserted in FTSA IUJ52_05525 PF08478 POTRA domain, FtsQ-type IUJ52_05525 PF03799 Cell division protein FtsQ IUJ52_05530 PF02875 Mur ligase family, glutamate ligase domain IUJ52_05530 PF01225 Mur ligase family, catalytic domain IUJ52_05530 PF08245 Mur ligase middle domain IUJ52_05535 PF03033 Glycosyltransferase family 28 N-terminal domain IUJ52_05535 PF04101 Glycosyltransferase family 28 C-terminal domain IUJ52_05540 PF01098 Cell cycle protein IUJ52_05545 PF08245 Mur ligase middle domain IUJ52_05545 PF02875 Mur ligase family, glutamate ligase domain IUJ52_05550 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 IUJ52_05550 PF00953 Glycosyl transferase family 4 IUJ52_05555 PF08245 Mur ligase middle domain IUJ52_05555 PF01225 Mur ligase family, catalytic domain IUJ52_05555 PF02875 Mur ligase family, glutamate ligase domain IUJ52_05560 PF02875 Mur ligase family, glutamate ligase domain IUJ52_05560 PF08245 Mur ligase middle domain IUJ52_05560 PF01225 Mur ligase family, catalytic domain IUJ52_05565 PF03717 Penicillin-binding Protein dimerisation domain IUJ52_05565 PF00905 Penicillin binding protein transpeptidase domain IUJ52_05570 PF04999 Cell division protein FtsL IUJ52_05575 PF01795 MraW methylase family IUJ52_05585 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUJ52_05590 PF04348 LppC putative lipoprotein IUJ52_05595 PF02021 Uncharacterised protein family UPF0102 IUJ52_05600 PF13580 SIS domain IUJ52_05605 PF04972 BON domain IUJ52_05610 PF04386 Stringent starvation protein B IUJ52_05615 PF00043 Glutathione S-transferase, C-terminal domain IUJ52_05615 PF02798 Glutathione S-transferase, N-terminal domain IUJ52_05620 PF02167 Cytochrome C1 family IUJ52_05625 PF00033 Cytochrome b/b6/petB IUJ52_05625 PF00032 Cytochrome b(C-terminal)/b6/petD IUJ52_05630 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IUJ52_05630 PF00355 Rieske [2Fe-2S] domain IUJ52_05640 PF00380 Ribosomal protein S9/S16 IUJ52_05645 PF00572 Ribosomal protein L13 IUJ52_05650 PF03969 AFG1-like ATPase IUJ52_05655 PF06295 Protein of unknown function (DUF1043) IUJ52_05660 PF00595 PDZ domain IUJ52_05665 PF13180 PDZ domain IUJ52_05670 PF01245 Ribosomal protein L19 IUJ52_05675 PF01746 tRNA (Guanine-1)-methyltransferase IUJ52_05680 PF01782 RimM N-terminal domain IUJ52_05680 PF05239 PRC-barrel domain IUJ52_05685 PF00886 Ribosomal protein S16 IUJ52_05690 PF02881 SRP54-type protein, helical bundle domain IUJ52_05690 PF00448 SRP54-type protein, GTPase domain IUJ52_05690 PF02978 Signal peptide binding domain IUJ52_05695 PF01578 Cytochrome C assembly protein IUJ52_05700 PF00571 CBS domain IUJ52_05700 PF03471 Transporter associated domain IUJ52_05700 PF01595 Cyclin M transmembrane N-terminal domain IUJ52_05705 PF02664 S-Ribosylhomocysteinase (LuxS) IUJ52_05715 PF04262 Glutamate-cysteine ligase IUJ52_05720 PF05193 Peptidase M16 inactive domain IUJ52_05720 PF00675 Insulinase (Peptidase family M16) IUJ52_05725 PF09335 SNARE associated Golgi protein IUJ52_05730 PF08240 Alcohol dehydrogenase GroES-like domain IUJ52_05730 PF00107 Zinc-binding dehydrogenase IUJ52_05735 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit IUJ52_05740 PF00682 HMGL-like IUJ52_05740 PF02436 Conserved carboxylase domain IUJ52_05740 PF00364 Biotin-requiring enzyme IUJ52_05745 PF04277 Oxaloacetate decarboxylase, gamma chain IUJ52_05790 PF02599 Global regulator protein family IUJ52_05795 PF13840 ACT domain IUJ52_05795 PF00696 Amino acid kinase family IUJ52_05795 PF01842 ACT domain IUJ52_05800 PF02272 DHHA1 domain IUJ52_05800 PF01411 tRNA synthetases class II (A) IUJ52_05800 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IUJ52_05805 PF02631 RecX family IUJ52_05810 PF00154 recA bacterial DNA recombination protein IUJ52_05815 PF02464 Competence-damaged protein IUJ52_05820 PF01624 MutS domain I IUJ52_05820 PF05188 MutS domain II IUJ52_05820 PF05192 MutS domain III IUJ52_05820 PF05190 MutS family domain IV IUJ52_05820 PF00488 MutS domain V IUJ52_05825 PF00140 Sigma-70 factor, region 1.2 IUJ52_05825 PF04542 Sigma-70 region 2 IUJ52_05825 PF04539 Sigma-70 region 3 IUJ52_05825 PF04545 Sigma-70, region 4 IUJ52_05830 PF01476 LysM domain IUJ52_05830 PF01551 Peptidase family M23 IUJ52_05840 PF01975 Survival protein SurE IUJ52_05845 PF01142 tRNA pseudouridine synthase D (TruD) IUJ52_05850 PF02542 YgbB family IUJ52_05855 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IUJ52_05860 PF04977 Septum formation initiator IUJ52_05865 PF02673 Bacitracin resistance protein BacA IUJ52_05870 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IUJ52_05875 PF02152 Dihydroneopterin aldolase IUJ52_05880 PF02660 Glycerol-3-phosphate acyltransferase IUJ52_05885 PF00561 alpha/beta hydrolase fold IUJ52_05885 PF00364 Biotin-requiring enzyme IUJ52_05890 PF00814 Glycoprotease family IUJ52_05895 PF01165 Ribosomal protein S21 IUJ52_05900 PF09424 Yqey-like protein IUJ52_05905 PF10410 DnaB-helicase binding domain of primase IUJ52_05905 PF08278 DNA primase DnaG DnaB-binding IUJ52_05905 PF08275 DNA primase catalytic core, N-terminal domain IUJ52_05905 PF01807 CHC2 zinc finger IUJ52_05910 PF00140 Sigma-70 factor, region 1.2 IUJ52_05910 PF04545 Sigma-70, region 4 IUJ52_05910 PF04546 Sigma-70, non-essential region IUJ52_05910 PF03979 Sigma-70 factor, region 1.1 IUJ52_05910 PF04539 Sigma-70 region 3 IUJ52_05910 PF04542 Sigma-70 region 2 IUJ52_05920 PF00589 Phage integrase family IUJ52_05920 PF13356 Arm DNA-binding domain IUJ52_05960 PF06803 Protein of unknown function (DUF1232) IUJ52_05975 PF04002 RadC-like JAB domain IUJ52_06040 PF03448 MgtE intracellular N domain IUJ52_06040 PF00571 CBS domain IUJ52_06040 PF01769 Divalent cation transporter IUJ52_06060 PF18089 DAPG hydrolase PhiG domain IUJ52_06065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_06065 PF03466 LysR substrate binding domain IUJ52_06070 PF01380 SIS domain IUJ52_06075 PF00455 DeoR C terminal sensor domain IUJ52_06075 PF08220 DeoR-like helix-turn-helix domain IUJ52_06080 PF00224 Pyruvate kinase, barrel domain IUJ52_06080 PF02887 Pyruvate kinase, alpha/beta domain IUJ52_06085 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_06095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_06095 PF03466 LysR substrate binding domain IUJ52_06100 PF01810 LysE type translocator IUJ52_06110 PF00924 Mechanosensitive ion channel IUJ52_06110 PF05552 Conserved TM helix IUJ52_06115 PF01116 Fructose-bisphosphate aldolase class-II IUJ52_06120 PF00162 Phosphoglycerate kinase IUJ52_06125 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IUJ52_06125 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IUJ52_06130 PF07715 TonB-dependent Receptor Plug Domain IUJ52_06130 PF00593 TonB dependent receptor IUJ52_06135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_06135 PF03466 LysR substrate binding domain IUJ52_06140 PF02780 Transketolase, C-terminal domain IUJ52_06140 PF02779 Transketolase, pyrimidine binding domain IUJ52_06140 PF00456 Transketolase, thiamine diphosphate binding domain IUJ52_06145 PF00438 S-adenosylmethionine synthetase, N-terminal domain IUJ52_06145 PF02772 S-adenosylmethionine synthetase, central domain IUJ52_06145 PF02773 S-adenosylmethionine synthetase, C-terminal domain IUJ52_06155 PF10263 SprT-like family IUJ52_06155 PF17283 SprT-like zinc ribbon domain IUJ52_06160 PF04231 Endonuclease I IUJ52_06165 PF04452 RNA methyltransferase IUJ52_06170 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IUJ52_06170 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IUJ52_06175 PF02622 Uncharacterized ACR, COG1678 IUJ52_06180 PF03652 Holliday junction resolvase IUJ52_06185 PF00437 Type II/IV secretion system protein IUJ52_06190 PF00437 Type II/IV secretion system protein IUJ52_06195 PF01168 Alanine racemase, N-terminal domain IUJ52_06200 PF03807 NADP oxidoreductase coenzyme F420-dependent IUJ52_06200 PF14748 Pyrroline-5-carboxylate reductase dimerisation IUJ52_06205 PF02325 YGGT family IUJ52_06210 PF02594 Uncharacterised ACR, YggU family COG1872 IUJ52_06220 PF01725 Ham1 family IUJ52_06225 PF06969 HemN C-terminal domain IUJ52_06225 PF04055 Radical SAM superfamily IUJ52_06230 PF04960 Glutaminase IUJ52_06235 PF02390 Putative methyltransferase IUJ52_06240 PF00730 HhH-GPD superfamily base excision DNA repair protein IUJ52_06240 PF14815 NUDIX domain IUJ52_06245 PF00005 ABC transporter IUJ52_06250 PF01032 FecCD transport family IUJ52_06255 PF01497 Periplasmic binding protein IUJ52_06265 PF04362 Bacterial Fe(2+) trafficking IUJ52_06270 PF01464 Transglycosylase SLT domain IUJ52_06270 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain IUJ52_06320 PF00226 DnaJ domain IUJ52_06320 PF05099 Tellurite resistance protein TerB IUJ52_06325 PF04453 LPS transport system D IUJ52_06325 PF03968 OstA-like protein IUJ52_06330 PF09312 SurA N-terminal domain IUJ52_06335 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IUJ52_06340 PF00398 Ribosomal RNA adenine dimethylase IUJ52_06345 PF04379 ApaG domain IUJ52_06350 PF00149 Calcineurin-like phosphoesterase IUJ52_06355 PF00186 Dihydrofolate reductase IUJ52_06360 PF12821 Threonine/Serine exporter, ThrE IUJ52_06365 PF06738 Putative threonine/serine exporter IUJ52_06370 PF01926 50S ribosome-binding GTPase IUJ52_06370 PF01018 GTP1/OBG IUJ52_06375 PF01016 Ribosomal L27 protein IUJ52_06380 PF00829 Ribosomal prokaryotic L21 protein IUJ52_06385 PF00348 Polyprenyl synthetase IUJ52_06390 PF13520 Amino acid permease IUJ52_06395 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IUJ52_06395 PF00056 lactate/malate dehydrogenase, NAD binding domain IUJ52_06400 PF01316 Arginine repressor, DNA binding domain IUJ52_06400 PF02863 Arginine repressor, C-terminal domain IUJ52_06415 PF00582 Universal stress protein family IUJ52_06430 PF06877 Regulator of ribonuclease activity B IUJ52_06435 PF01523 Putative modulator of DNA gyrase IUJ52_06440 PF00795 Carbon-nitrogen hydrolase IUJ52_06445 PF13502 AsmA-like C-terminal region IUJ52_06445 PF13116 Protein of unknown function IUJ52_06450 PF10150 Ribonuclease E/G family IUJ52_06450 PF00575 S1 RNA binding domain IUJ52_06455 PF02545 Maf-like protein IUJ52_06460 PF04093 rod shape-determining protein MreD IUJ52_06465 PF04085 rod shape-determining protein MreC IUJ52_06500 PF07963 Prokaryotic N-terminal methylation motif IUJ52_06505 PF07963 Prokaryotic N-terminal methylation motif IUJ52_06515 PF00482 Type II secretion system (T2SS), protein F IUJ52_06520 PF00437 Type II/IV secretion system protein IUJ52_06520 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IUJ52_06530 PF13401 AAA domain IUJ52_06530 PF01471 Putative peptidoglycan binding domain IUJ52_06535 PF00263 Bacterial type II and III secretion system protein IUJ52_06535 PF03958 Bacterial type II/III secretion system short domain IUJ52_06555 PF00563 EAL domain IUJ52_06555 PF17157 Gammaproteobacterial periplasmic sensor domain IUJ52_06555 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_06560 PF00436 Single-strand binding protein family IUJ52_06565 PF00196 Bacterial regulatory proteins, luxR family IUJ52_06570 PF00483 Nucleotidyl transferase IUJ52_06575 PF17760 UvrA interaction domain IUJ52_06575 PF17755 UvrA DNA-binding domain IUJ52_06575 PF00005 ABC transporter IUJ52_06585 PF00266 Aminotransferase class-V IUJ52_06590 PF00696 Amino acid kinase family IUJ52_06590 PF01842 ACT domain IUJ52_06595 PF02310 B12 binding domain IUJ52_06595 PF00809 Pterin binding enzyme IUJ52_06595 PF02607 B12 binding domain IUJ52_06595 PF02965 Vitamin B12 dependent methionine synthase, activation domain IUJ52_06595 PF02574 Homocysteine S-methyltransferase IUJ52_06600 PF00999 Sodium/hydrogen exchanger family IUJ52_06655 PF01507 Phosphoadenosine phosphosulfate reductase family IUJ52_06660 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IUJ52_06660 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IUJ52_06665 PF00175 Oxidoreductase NAD-binding domain IUJ52_06665 PF00258 Flavodoxin IUJ52_06665 PF00667 FAD binding domain IUJ52_06685 PF01207 Dihydrouridine synthase (Dus) IUJ52_06690 PF01475 Ferric uptake regulator family IUJ52_06700 PF00342 Phosphoglucose isomerase IUJ52_06705 PF01894 Uncharacterised protein family UPF0047 IUJ52_06710 PF00842 Alanine racemase, C-terminal domain IUJ52_06710 PF01168 Alanine racemase, N-terminal domain IUJ52_06715 PF00772 DnaB-like helicase N terminal domain IUJ52_06715 PF03796 DnaB-like helicase C terminal domain IUJ52_06725 PF01281 Ribosomal protein L9, N-terminal domain IUJ52_06725 PF03948 Ribosomal protein L9, C-terminal domain IUJ52_06730 PF01084 Ribosomal protein S18 IUJ52_06735 PF00436 Single-strand binding protein family IUJ52_06740 PF01250 Ribosomal protein S6 IUJ52_06745 PF00210 Ferritin-like domain IUJ52_06750 PF04324 BFD-like [2Fe-2S] binding domain IUJ52_06755 PF00009 Elongation factor Tu GTP binding domain IUJ52_06755 PF03144 Elongation factor Tu domain 2 IUJ52_06755 PF03143 Elongation factor Tu C-terminal domain IUJ52_06760 PF03144 Elongation factor Tu domain 2 IUJ52_06760 PF03764 Elongation factor G, domain IV IUJ52_06760 PF00679 Elongation factor G C-terminus IUJ52_06760 PF00009 Elongation factor Tu GTP binding domain IUJ52_06760 PF14492 Elongation Factor G, domain II IUJ52_06765 PF00177 Ribosomal protein S7p/S5e IUJ52_06770 PF00164 Ribosomal protein S12/S23 IUJ52_06775 PF04077 DsrH like protein IUJ52_06780 PF02635 DsrE/DsrF-like family IUJ52_06785 PF02635 DsrE/DsrF-like family IUJ52_06790 PF08348 YheO-like PAS domain IUJ52_06790 PF13309 HTH domain IUJ52_06795 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IUJ52_06795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUJ52_06805 PF04102 SlyX IUJ52_06810 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) IUJ52_06815 PF01145 SPFH domain / Band 7 family IUJ52_06820 PF01145 SPFH domain / Band 7 family IUJ52_06820 PF12221 Bacterial membrane protein N terminal IUJ52_06825 PF01926 50S ribosome-binding GTPase IUJ52_06825 PF13167 GTP-binding GTPase N-terminal IUJ52_06825 PF16360 GTP-binding GTPase Middle Region IUJ52_06830 PF17209 Hfq protein IUJ52_06840 PF08676 MutL C terminal dimerisation domain IUJ52_06840 PF01119 DNA mismatch repair protein, C-terminal domain IUJ52_06845 PF01520 N-acetylmuramoyl-L-alanine amidase IUJ52_06850 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IUJ52_06855 PF08331 Domain of unknown function (DUF1730) IUJ52_06905 PF00929 Exonuclease IUJ52_06910 PF03193 RsgA GTPase IUJ52_06915 PF02666 Phosphatidylserine decarboxylase IUJ52_06920 PF03600 Citrate transporter IUJ52_06920 PF02080 TrkA-C domain IUJ52_06925 PF00672 HAMP domain IUJ52_06925 PF02743 Cache domain IUJ52_06925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_06935 PF01676 Metalloenzyme superfamily IUJ52_06935 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IUJ52_06940 PF01551 Peptidase family M23 IUJ52_06950 PF08360 QacR-like protein, C-terminal region IUJ52_06950 PF00440 Bacterial regulatory proteins, tetR family IUJ52_06955 PF01208 Uroporphyrinogen decarboxylase (URO-D) IUJ52_06960 PF00293 NUDIX domain IUJ52_06960 PF09297 NADH pyrophosphatase zinc ribbon domain IUJ52_06965 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ IUJ52_06970 PF04998 RNA polymerase Rpb1, domain 5 IUJ52_06970 PF05000 RNA polymerase Rpb1, domain 4 IUJ52_06970 PF04983 RNA polymerase Rpb1, domain 3 IUJ52_06970 PF00623 RNA polymerase Rpb1, domain 2 IUJ52_06970 PF04997 RNA polymerase Rpb1, domain 1 IUJ52_06975 PF04563 RNA polymerase beta subunit IUJ52_06975 PF04561 RNA polymerase Rpb2, domain 2 IUJ52_06975 PF04565 RNA polymerase Rpb2, domain 3 IUJ52_06975 PF10385 RNA polymerase beta subunit external 1 domain IUJ52_06975 PF00562 RNA polymerase Rpb2, domain 6 IUJ52_06975 PF04560 RNA polymerase Rpb2, domain 7 IUJ52_06980 PF00542 Ribosomal protein L7/L12 C-terminal domain IUJ52_06980 PF16320 Ribosomal protein L7/L12 dimerisation domain IUJ52_06985 PF00466 Ribosomal protein L10 IUJ52_06990 PF00687 Ribosomal protein L1p/L10e family IUJ52_06995 PF00298 Ribosomal protein L11, RNA binding domain IUJ52_06995 PF03946 Ribosomal protein L11, N-terminal domain IUJ52_07000 PF02357 Transcription termination factor nusG IUJ52_07000 PF00467 KOW motif IUJ52_07005 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IUJ52_07010 PF03144 Elongation factor Tu domain 2 IUJ52_07010 PF03143 Elongation factor Tu C-terminal domain IUJ52_07010 PF00009 Elongation factor Tu GTP binding domain IUJ52_07035 PF00485 Phosphoribulokinase / Uridine kinase family IUJ52_07040 PF02237 Biotin protein ligase C terminal domain IUJ52_07040 PF03099 Biotin/lipoate A/B protein ligase family IUJ52_07040 PF08279 HTH domain IUJ52_07045 PF01565 FAD binding domain IUJ52_07045 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IUJ52_07055 PF13091 PLD-like domain IUJ52_07090 PF00175 Oxidoreductase NAD-binding domain IUJ52_07095 PF00970 Oxidoreductase FAD-binding domain IUJ52_07095 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ52_07095 PF00175 Oxidoreductase NAD-binding domain IUJ52_07100 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase IUJ52_07110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ52_07110 PF07498 Rho termination factor, N-terminal domain IUJ52_07110 PF07497 Rho termination factor, RNA-binding domain IUJ52_07115 PF00085 Thioredoxin IUJ52_07120 PF00270 DEAD/DEAH box helicase IUJ52_07120 PF00271 Helicase conserved C-terminal domain IUJ52_07125 PF02541 Ppx/GppA phosphatase family IUJ52_07130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_07130 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_07130 PF00072 Response regulator receiver domain IUJ52_07130 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ52_07130 PF01627 Hpt domain IUJ52_07135 PF12832 MFS_1 like family IUJ52_07150 PF00501 AMP-binding enzyme IUJ52_07150 PF13193 AMP-binding enzyme C-terminal domain IUJ52_07150 PF16177 Acetyl-coenzyme A synthetase N-terminus IUJ52_07155 PF01220 Dehydroquinase class II IUJ52_07160 PF00364 Biotin-requiring enzyme IUJ52_07165 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUJ52_07165 PF02785 Biotin carboxylase C-terminal domain IUJ52_07165 PF00289 Biotin carboxylase, N-terminal domain IUJ52_07175 PF01207 Dihydrouridine synthase (Dus) IUJ52_07180 PF02954 Bacterial regulatory protein, Fis family IUJ52_07185 PF00672 HAMP domain IUJ52_07185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_07185 PF17200 Single Cache domain 2 IUJ52_07190 PF13411 MerR HTH family regulatory protein IUJ52_07200 PF02142 MGS-like domain IUJ52_07200 PF01808 AICARFT/IMPCHase bienzyme IUJ52_07205 PF02843 Phosphoribosylglycinamide synthetase, C domain IUJ52_07205 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IUJ52_07205 PF02844 Phosphoribosylglycinamide synthetase, N domain IUJ52_07215 PF00216 Bacterial DNA-binding protein IUJ52_07220 PF00571 CBS domain IUJ52_07220 PF01595 Cyclin M transmembrane N-terminal domain IUJ52_07225 PF00924 Mechanosensitive ion channel IUJ52_07230 PF04222 Protein of unknown function (DUF416) IUJ52_07235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ52_07240 PF03167 Uracil DNA glycosylase superfamily IUJ52_07260 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain IUJ52_07260 PF01464 Transglycosylase SLT domain IUJ52_07275 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain IUJ52_07275 PF10996 Beta-Casp domain IUJ52_07275 PF00753 Metallo-beta-lactamase superfamily IUJ52_07280 PF02397 Bacterial sugar transferase IUJ52_07285 PF05159 Capsule polysaccharide biosynthesis protein IUJ52_07290 PF00534 Glycosyl transferases group 1 IUJ52_07295 PF13439 Glycosyltransferase Family 4 IUJ52_07295 PF00534 Glycosyl transferases group 1 IUJ52_07305 PF09587 Bacterial capsule synthesis protein PGA_cap IUJ52_07315 PF02350 UDP-N-acetylglucosamine 2-epimerase IUJ52_07320 PF01370 NAD dependent epimerase/dehydratase family IUJ52_07325 PF08485 Polysaccharide biosynthesis protein C-terminal IUJ52_07325 PF02719 Polysaccharide biosynthesis protein IUJ52_07340 PF00953 Glycosyl transferase family 4 IUJ52_07345 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IUJ52_07345 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IUJ52_07345 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IUJ52_07350 PF00535 Glycosyl transferase family 2 IUJ52_07360 PF00535 Glycosyl transferase family 2 IUJ52_07370 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IUJ52_07370 PF01565 FAD binding domain IUJ52_07375 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IUJ52_07385 PF02706 Chain length determinant protein IUJ52_07385 PF13614 AAA domain IUJ52_07385 PF13807 G-rich domain on putative tyrosine kinase IUJ52_07390 PF01451 Low molecular weight phosphotyrosine protein phosphatase IUJ52_07395 PF02563 Polysaccharide biosynthesis/export protein IUJ52_07395 PF10531 SLBB domain IUJ52_07395 PF18412 Outer-membrane lipoprotein Wza C-terminal domain IUJ52_07405 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF IUJ52_07415 PF06082 Exopolysaccharide biosynthesis protein YbjH IUJ52_07420 PF01370 NAD dependent epimerase/dehydratase family IUJ52_07425 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IUJ52_07425 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IUJ52_07425 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IUJ52_07430 PF03279 Bacterial lipid A biosynthesis acyltransferase IUJ52_07440 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IUJ52_07445 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IUJ52_07450 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IUJ52_07455 PF00534 Glycosyl transferases group 1 IUJ52_07455 PF13439 Glycosyltransferase Family 4 IUJ52_07465 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IUJ52_07470 PF00535 Glycosyl transferase family 2 IUJ52_07475 PF13439 Glycosyltransferase Family 4 IUJ52_07475 PF00534 Glycosyl transferases group 1 IUJ52_07480 PF13439 Glycosyltransferase Family 4 IUJ52_07480 PF00534 Glycosyl transferases group 1 IUJ52_07485 PF01467 Cytidylyltransferase-like IUJ52_07495 PF01370 NAD dependent epimerase/dehydratase family IUJ52_07500 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IUJ52_07500 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IUJ52_07500 PF06827 Zinc finger found in FPG and IleRS IUJ52_07510 PF00471 Ribosomal protein L33 IUJ52_07515 PF00830 Ribosomal L28 family IUJ52_07520 PF04002 RadC-like JAB domain IUJ52_07525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_07525 PF17200 Single Cache domain 2 IUJ52_07525 PF00672 HAMP domain IUJ52_07530 PF04127 DNA / pantothenate metabolism flavoprotein IUJ52_07530 PF02441 Flavoprotein IUJ52_07535 PF00440 Bacterial regulatory proteins, tetR family IUJ52_07540 PF03279 Bacterial lipid A biosynthesis acyltransferase IUJ52_07545 PF00156 Phosphoribosyl transferase domain IUJ52_07550 PF01138 3' exoribonuclease family, domain 1 IUJ52_07550 PF03725 3' exoribonuclease family, domain 2 IUJ52_07555 PF03755 YicC-like family, N-terminal region IUJ52_07555 PF08340 Domain of unknown function (DUF1732) IUJ52_07565 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_07565 PF18113 Rubredoxin binding C-terminal domain IUJ52_07570 PF00258 Flavodoxin IUJ52_07570 PF00753 Metallo-beta-lactamase superfamily IUJ52_07570 PF00301 Rubredoxin IUJ52_07575 PF01590 GAF domain IUJ52_07575 PF00158 Sigma-54 interaction domain IUJ52_07580 PF03350 Uncharacterized protein family, UPF0114 IUJ52_07585 PF01032 FecCD transport family IUJ52_07590 PF01497 Periplasmic binding protein IUJ52_07595 PF00005 ABC transporter IUJ52_07600 PF00593 TonB dependent receptor IUJ52_07600 PF07715 TonB-dependent Receptor Plug Domain IUJ52_07605 PF00005 ABC transporter IUJ52_07605 PF00664 ABC transporter transmembrane region IUJ52_07620 PF09382 RQC domain IUJ52_07620 PF00271 Helicase conserved C-terminal domain IUJ52_07620 PF00570 HRDC domain IUJ52_07620 PF16124 RecQ zinc-binding IUJ52_07620 PF00270 DEAD/DEAH box helicase IUJ52_07625 PF00892 EamA-like transporter family IUJ52_07635 PF01810 LysE type translocator IUJ52_07645 PF13361 UvrD-like helicase C-terminal domain IUJ52_07645 PF00580 UvrD/REP helicase N-terminal domain IUJ52_07655 PF05114 Protein of unknown function (DUF692) IUJ52_07675 PF01432 Peptidase family M3 IUJ52_07680 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IUJ52_07685 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ52_07685 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_07690 PF12802 MarR family IUJ52_07700 PF00529 HlyD membrane-fusion protein of T1SS IUJ52_07700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_07705 PF00873 AcrB/AcrD/AcrF family IUJ52_07740 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_07740 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ52_07745 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_07750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ52_07755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ52_07755 PF00005 ABC transporter IUJ52_07785 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ52_07790 PF00580 UvrD/REP helicase N-terminal domain IUJ52_07790 PF13361 UvrD-like helicase C-terminal domain IUJ52_07795 PF00440 Bacterial regulatory proteins, tetR family IUJ52_07800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_07805 PF00873 AcrB/AcrD/AcrF family IUJ52_07810 PF04380 Membrane fusogenic activity IUJ52_07815 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IUJ52_07815 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IUJ52_07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_07820 PF03466 LysR substrate binding domain IUJ52_07860 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ52_07865 PF07369 Protein of unknown function (DUF1488) IUJ52_07870 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IUJ52_07870 PF01488 Shikimate / quinate 5-dehydrogenase IUJ52_07870 PF08501 Shikimate dehydrogenase substrate binding domain IUJ52_07875 PF01218 Coproporphyrinogen III oxidase IUJ52_07880 PF01300 Telomere recombination IUJ52_07885 PF00731 AIR carboxylase IUJ52_07890 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IUJ52_07890 PF02222 ATP-grasp domain IUJ52_07895 PF01396 Topoisomerase DNA binding C4 zinc finger IUJ52_07900 PF04361 Protein of unknown function (DUF494) IUJ52_07905 PF02481 DNA recombination-mediator protein A IUJ52_07905 PF17782 DprA winged helix domain IUJ52_07915 PF01327 Polypeptide deformylase IUJ52_07920 PF02911 Formyl transferase, C-terminal domain IUJ52_07920 PF00551 Formyl transferase IUJ52_07925 PF01189 16S rRNA methyltransferase RsmB/F IUJ52_07925 PF01029 NusB family IUJ52_07930 PF02254 TrkA-N domain IUJ52_07930 PF02080 TrkA-C domain IUJ52_07935 PF02386 Cation transport protein IUJ52_07945 PF03006 Haemolysin-III related IUJ52_07950 PF07070 SpoOM protein IUJ52_07955 PF06288 Protein of unknown function (DUF1040) IUJ52_07960 PF13746 4Fe-4S dicluster domain IUJ52_07960 PF12801 4Fe-4S binding domain IUJ52_07960 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase IUJ52_07965 PF01636 Phosphotransferase enzyme family IUJ52_07970 PF01323 DSBA-like thioredoxin domain IUJ52_07975 PF01553 Acyltransferase IUJ52_07980 PF01078 Magnesium chelatase, subunit ChlI IUJ52_07980 PF13335 Magnesium chelatase, subunit ChlI C-terminal IUJ52_07985 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ52_07985 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ52_07985 PF00205 Thiamine pyrophosphate enzyme, central domain IUJ52_07995 PF01063 Amino-transferase class IV IUJ52_08000 PF00920 Dehydratase family IUJ52_08005 PF00585 C-terminal regulatory domain of Threonine dehydratase IUJ52_08005 PF00291 Pyridoxal-phosphate dependent enzyme IUJ52_08010 PF08240 Alcohol dehydrogenase GroES-like domain IUJ52_08010 PF00107 Zinc-binding dehydrogenase IUJ52_08015 PF03466 LysR substrate binding domain IUJ52_08015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_08025 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_08030 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_08040 PF01206 Sulfurtransferase TusA IUJ52_08050 PF01169 Uncharacterized protein family UPF0016 IUJ52_08055 PF02091 Glycyl-tRNA synthetase alpha subunit IUJ52_08060 PF05746 DALR anticodon binding domain IUJ52_08060 PF02092 Glycyl-tRNA synthetase beta subunit IUJ52_08065 PF00155 Aminotransferase class I and II IUJ52_08070 PF00011 Hsp20/alpha crystallin family IUJ52_08080 PF00204 DNA gyrase B IUJ52_08080 PF00986 DNA gyrase B subunit, carboxyl terminus IUJ52_08080 PF18053 DNA gyrase B subunit insert domain IUJ52_08080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_08080 PF01751 Toprim domain IUJ52_08085 PF02463 RecF/RecN/SMC N terminal domain IUJ52_08090 PF02767 DNA polymerase III beta subunit, central domain IUJ52_08090 PF02768 DNA polymerase III beta subunit, C-terminal domain IUJ52_08090 PF00712 DNA polymerase III beta subunit, N-terminal domain IUJ52_08095 PF00308 Bacterial dnaA protein IUJ52_08095 PF08299 Bacterial dnaA protein helix-turn-helix IUJ52_08095 PF11638 DnaA N-terminal domain IUJ52_08100 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ52_08105 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_08110 PF00005 ABC transporter IUJ52_08115 PF00468 Ribosomal protein L34 IUJ52_08120 PF00825 Ribonuclease P IUJ52_08125 PF01809 Putative membrane protein insertion efficiency factor IUJ52_08130 PF14849 YidC periplasmic domain IUJ52_08130 PF02096 60Kd inner membrane protein IUJ52_08135 PF01926 50S ribosome-binding GTPase IUJ52_08135 PF12631 MnmE helical domain IUJ52_08135 PF10396 GTP-binding protein TrmE N-terminus IUJ52_08140 PF00258 Flavodoxin IUJ52_08145 PF01134 Glucose inhibited division protein A IUJ52_08145 PF13932 GidA associated domain IUJ52_08150 PF02527 rRNA small subunit methyltransferase G IUJ52_08155 PF13614 AAA domain IUJ52_08160 PF17762 HTH domain found in ParB protein IUJ52_08160 PF02195 ParB-like nuclease domain IUJ52_08165 PF03899 ATP synthase I chain IUJ52_08170 PF00119 ATP synthase A chain IUJ52_08175 PF00137 ATP synthase subunit C IUJ52_08180 PF00430 ATP synthase B/B' CF(0) IUJ52_08185 PF00213 ATP synthase delta (OSCP) subunit IUJ52_08190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ52_08190 PF00306 ATP synthase alpha/beta chain, C terminal domain IUJ52_08190 PF02874 ATP synthase alpha/beta family, beta-barrel domain IUJ52_08195 PF00231 ATP synthase IUJ52_08200 PF02874 ATP synthase alpha/beta family, beta-barrel domain IUJ52_08200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ52_08205 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain IUJ52_08205 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IUJ52_08210 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ52_08210 PF14602 Hexapeptide repeat of succinyl-transferase IUJ52_08210 PF12804 MobA-like NTP transferase domain IUJ52_08215 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_08220 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ52_08225 PF07690 Major Facilitator Superfamily IUJ52_08230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_08230 PF03466 LysR substrate binding domain IUJ52_08235 PF00108 Thiolase, N-terminal domain IUJ52_08235 PF02803 Thiolase, C-terminal domain IUJ52_08240 PF00378 Enoyl-CoA hydratase/isomerase IUJ52_08240 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ52_08240 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ52_08245 PF09186 Domain of unknown function (DUF1949) IUJ52_08245 PF01205 Uncharacterized protein family UPF0029 IUJ52_08250 PF02386 Cation transport protein IUJ52_08255 PF12724 Flavodoxin domain IUJ52_08325 PF07732 Multicopper oxidase IUJ52_08325 PF07731 Multicopper oxidase IUJ52_08325 PF00394 Multicopper oxidase IUJ52_08330 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IUJ52_08335 PF13667 ThiC-associated domain IUJ52_08335 PF01964 Radical SAM ThiC family IUJ52_08340 PF02581 Thiamine monophosphate synthase IUJ52_08345 PF00899 ThiF family IUJ52_08355 PF05690 Thiazole biosynthesis protein ThiG IUJ52_08360 PF06968 Biotin and Thiamin Synthesis associated domain IUJ52_08360 PF04055 Radical SAM superfamily IUJ52_08365 PF00571 CBS domain IUJ52_08365 PF00005 ABC transporter IUJ52_08370 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_08375 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IUJ52_08380 PF05199 GMC oxidoreductase IUJ52_08380 PF00732 GMC oxidoreductase IUJ52_08385 PF00171 Aldehyde dehydrogenase family IUJ52_08390 PF00440 Bacterial regulatory proteins, tetR family IUJ52_08390 PF13977 BetI-type transcriptional repressor, C-terminal IUJ52_08395 PF01321 Creatinase/Prolidase N-terminal domain IUJ52_08395 PF00557 Metallopeptidase family M24 IUJ52_08395 PF01321 Creatinase/Prolidase N-terminal domain IUJ52_08395 PF00557 Metallopeptidase family M24 IUJ52_08400 PF03466 LysR substrate binding domain IUJ52_08400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_08405 PF07690 Major Facilitator Superfamily IUJ52_08415 PF01037 Lrp/AsnC ligand binding domain IUJ52_08420 PF00563 EAL domain IUJ52_08420 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_08420 PF08448 PAS fold IUJ52_08425 PF04445 Putative SAM-dependent methyltransferase IUJ52_08435 PF00892 EamA-like transporter family IUJ52_08440 PF00582 Universal stress protein family IUJ52_08445 PF00210 Ferritin-like domain IUJ52_08450 PF10625 Universal stress protein B (UspB) IUJ52_08460 PF02653 Branched-chain amino acid transport system / permease component IUJ52_08465 PF02653 Branched-chain amino acid transport system / permease component IUJ52_08470 PF00005 ABC transporter IUJ52_08475 PF13407 Periplasmic binding protein domain IUJ52_08480 PF02653 Branched-chain amino acid transport system / permease component IUJ52_08485 PF00005 ABC transporter IUJ52_08490 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IUJ52_08495 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IUJ52_08495 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IUJ52_08500 PF00596 Class II Aldolase and Adducin N-terminal domain IUJ52_08505 PF02610 L-arabinose isomerase IUJ52_08505 PF11762 L-arabinose isomerase C-terminal domain IUJ52_08515 PF12833 Helix-turn-helix domain IUJ52_08515 PF02311 AraC-like ligand binding domain IUJ52_08530 PF02646 RmuC family IUJ52_08535 PF01209 ubiE/COQ5 methyltransferase family IUJ52_08540 PF02036 SCP-2 sterol transfer family IUJ52_08545 PF03109 ABC1 family IUJ52_08550 PF02416 mttA/Hcf106 family IUJ52_08555 PF02416 mttA/Hcf106 family IUJ52_08560 PF00902 Sec-independent protein translocase protein (TatC) IUJ52_08565 PF01026 TatD related DNase IUJ52_08570 PF00490 Delta-aminolevulinic acid dehydratase IUJ52_08580 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IUJ52_08580 PF00476 DNA polymerase family A IUJ52_08580 PF01612 3'-5' exonuclease IUJ52_08580 PF01367 5'-3' exonuclease, C-terminal SAM fold IUJ52_08585 PF01926 50S ribosome-binding GTPase IUJ52_08590 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ52_08600 PF04220 Der GTPase activator (YihI) IUJ52_08605 PF10675 Protein of unknown function (DUF2489) IUJ52_08610 PF04055 Radical SAM superfamily IUJ52_08610 PF06969 HemN C-terminal domain IUJ52_08615 PF07719 Tetratricopeptide repeat IUJ52_08615 PF07219 HemY protein N-terminus IUJ52_08620 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase IUJ52_08625 PF02602 Uroporphyrinogen-III synthase HemD IUJ52_08630 PF03900 Porphobilinogen deaminase, C-terminal domain IUJ52_08630 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IUJ52_08635 PF12633 Adenylate cyclase NT domain IUJ52_08635 PF01295 Adenylate cyclase, class-I IUJ52_08640 PF01491 Frataxin-like domain IUJ52_08650 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IUJ52_08650 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IUJ52_08655 PF01678 Diaminopimelate epimerase IUJ52_08660 PF04340 Protein of unknown function, DUF484 IUJ52_08665 PF00589 Phage integrase family IUJ52_08665 PF02899 Phage integrase, N-terminal SAM-like domain IUJ52_08670 PF13419 Haloacid dehalogenase-like hydrolase IUJ52_08675 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_08675 PF00563 EAL domain IUJ52_08675 PF08495 FIST N domain IUJ52_08675 PF10442 FIST C domain IUJ52_08680 PF03942 DTW domain IUJ52_08695 PF12146 Serine aminopeptidase, S33 IUJ52_08700 PF01810 LysE type translocator IUJ52_08705 PF08668 HDOD domain IUJ52_08705 PF00563 EAL domain IUJ52_08710 PF01022 Bacterial regulatory protein, arsR family IUJ52_08715 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IUJ52_08715 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IUJ52_08730 PF00210 Ferritin-like domain IUJ52_08760 PF01914 MarC family integral membrane protein IUJ52_08775 PF00448 SRP54-type protein, GTPase domain IUJ52_08775 PF02881 SRP54-type protein, helical bundle domain IUJ52_08780 PF00005 ABC transporter IUJ52_08785 PF18075 FtsX extracellular domain IUJ52_08790 PF04545 Sigma-70, region 4 IUJ52_08790 PF00140 Sigma-70 factor, region 1.2 IUJ52_08790 PF04542 Sigma-70 region 2 IUJ52_08795 PF00581 Rhodanese-like domain IUJ52_08800 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease IUJ52_08800 PF01694 Rhomboid family IUJ52_08805 PF03748 Flagellar basal body-associated protein FliL IUJ52_08810 PF04345 Chorismate lyase IUJ52_08815 PF01040 UbiA prenyltransferase family IUJ52_08820 PF01553 Acyltransferase IUJ52_08825 PF01219 Prokaryotic diacylglycerol kinase IUJ52_08830 PF01726 LexA DNA binding domain IUJ52_08830 PF00717 Peptidase S24-like IUJ52_08840 PF01554 MatE IUJ52_08845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ52_08845 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_08850 PF00440 Bacterial regulatory proteins, tetR family IUJ52_08890 PF00075 RNase H IUJ52_08935 PF04002 RadC-like JAB domain IUJ52_08950 PF02384 N-6 DNA Methylase IUJ52_08955 PF01420 Type I restriction modification DNA specificity domain IUJ52_08960 PF00270 DEAD/DEAH box helicase IUJ52_08960 PF00271 Helicase conserved C-terminal domain IUJ52_08960 PF00570 HRDC domain IUJ52_08960 PF16124 RecQ zinc-binding IUJ52_08960 PF09382 RQC domain IUJ52_08965 PF02481 DNA recombination-mediator protein A IUJ52_08965 PF17782 DprA winged helix domain IUJ52_08970 PF11867 Domain of unknown function (DUF3387) IUJ52_08970 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IUJ52_08970 PF18766 SWI2/SNF2 ATPase IUJ52_08975 PF05958 tRNA (Uracil-5-)-methyltransferase IUJ52_08980 PF07715 TonB-dependent Receptor Plug Domain IUJ52_08980 PF00593 TonB dependent receptor IUJ52_08990 PF01177 Asp/Glu/Hydantoin racemase IUJ52_09060 PF00962 Adenosine/AMP deaminase IUJ52_09065 PF00563 EAL domain IUJ52_09065 PF03707 Bacterial signalling protein N terminal repeat IUJ52_09065 PF13188 PAS domain IUJ52_09065 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_09070 PF02954 Bacterial regulatory protein, Fis family IUJ52_09070 PF00072 Response regulator receiver domain IUJ52_09070 PF00158 Sigma-54 interaction domain IUJ52_09075 PF00989 PAS fold IUJ52_09075 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_09075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_09085 PF00120 Glutamine synthetase, catalytic domain IUJ52_09085 PF03951 Glutamine synthetase, beta-Grasp domain IUJ52_09090 PF00679 Elongation factor G C-terminus IUJ52_09090 PF00009 Elongation factor Tu GTP binding domain IUJ52_09090 PF03144 Elongation factor Tu domain 2 IUJ52_09105 PF03631 Virulence factor BrkB IUJ52_09110 PF02580 D-Tyr-tRNA(Tyr) deacylase IUJ52_09115 PF09500 Putative thioesterase (yiiD_Cterm) IUJ52_09115 PF00583 Acetyltransferase (GNAT) family IUJ52_09120 PF05170 AsmA family IUJ52_09125 PF01293 Phosphoenolpyruvate carboxykinase IUJ52_09130 PF01430 Hsp33 protein IUJ52_09135 PF01479 S4 domain IUJ52_09140 PF11356 Type II secretion system protein C IUJ52_09145 PF00263 Bacterial type II and III secretion system protein IUJ52_09145 PF03958 Bacterial type II/III secretion system short domain IUJ52_09150 PF00437 Type II/IV secretion system protein IUJ52_09155 PF00482 Type II secretion system (T2SS), protein F IUJ52_09160 PF08334 Type II secretion system (T2SS), protein G IUJ52_09160 PF07963 Prokaryotic N-terminal methylation motif IUJ52_09165 PF12019 Type II transport protein GspH IUJ52_09170 PF02501 Type II secretion system (T2SS), protein I IUJ52_09170 PF07963 Prokaryotic N-terminal methylation motif IUJ52_09175 PF11612 Type II secretion system (T2SS), protein J IUJ52_09175 PF07963 Prokaryotic N-terminal methylation motif IUJ52_09180 PF03934 Type II secretion system (T2SS), protein K IUJ52_09185 PF12693 GspL periplasmic domain IUJ52_09185 PF05134 Type II secretion system (T2SS), protein L IUJ52_09190 PF04612 Type II secretion system (T2SS), protein M IUJ52_09195 PF01203 Type II secretion system (T2SS), protein N IUJ52_09200 PF00459 Inositol monophosphatase family IUJ52_09205 PF00293 NUDIX domain IUJ52_09210 PF01521 Iron-sulphur cluster biosynthesis IUJ52_09210 PF01106 NifU-like domain IUJ52_09215 PF00156 Phosphoribosyl transferase domain IUJ52_09220 PF00561 alpha/beta hydrolase fold IUJ52_09230 PF09371 Tex-like protein N-terminal domain IUJ52_09230 PF17674 HHH domain IUJ52_09230 PF00575 S1 RNA binding domain IUJ52_09230 PF16921 Tex protein YqgF-like domain IUJ52_09240 PF03449 Transcription elongation factor, N-terminal IUJ52_09240 PF01272 Transcription elongation factor, GreA/GreB, C-term IUJ52_09245 PF00356 Bacterial regulatory proteins, lacI family IUJ52_09245 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IUJ52_09250 PF00920 Dehydratase family IUJ52_09255 PF01202 Shikimate kinase IUJ52_09260 PF02447 GntP family permease IUJ52_09265 PF01081 KDPG and KHG aldolase IUJ52_09270 PF00072 Response regulator receiver domain IUJ52_09270 PF00486 Transcriptional regulatory protein, C terminal IUJ52_09275 PF00672 HAMP domain IUJ52_09275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_09275 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_09280 PF00860 Permease family IUJ52_09285 PF00271 Helicase conserved C-terminal domain IUJ52_09285 PF17191 RecG wedge domain IUJ52_09285 PF00270 DEAD/DEAH box helicase IUJ52_09290 PF00588 SpoU rRNA Methylase family IUJ52_09290 PF12105 SpoU, rRNA methylase, C-terminal IUJ52_09295 PF02824 TGS domain IUJ52_09295 PF04607 Region found in RelA / SpoT proteins IUJ52_09295 PF13291 ACT domain IUJ52_09300 PF01192 RNA polymerase Rpb6 IUJ52_09305 PF00625 Guanylate kinase IUJ52_09310 PF02592 Putative vitamin uptake transporter IUJ52_09315 PF00474 Sodium:solute symporter family IUJ52_09325 PF03471 Transporter associated domain IUJ52_09325 PF00999 Sodium/hydrogen exchanger family IUJ52_09325 PF02080 TrkA-C domain IUJ52_09330 PF00072 Response regulator receiver domain IUJ52_09330 PF00196 Bacterial regulatory proteins, luxR family IUJ52_09335 PF18494 Pullulanase Ins domain IUJ52_09335 PF03714 Bacterial pullanase-associated domain IUJ52_09335 PF17967 Pullulanase N2 domain IUJ52_09335 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IUJ52_09335 PF11852 Domain of unknown function (DUF3372) IUJ52_09340 PF02683 Cytochrome C biogenesis protein transmembrane region IUJ52_09340 PF11412 Disulphide bond corrector protein DsbC IUJ52_09345 PF02863 Arginine repressor, C-terminal domain IUJ52_09345 PF01316 Arginine repressor, DNA binding domain IUJ52_09350 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain IUJ52_09350 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain IUJ52_09355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IUJ52_09355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IUJ52_09360 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IUJ52_09360 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IUJ52_09365 PF00696 Amino acid kinase family IUJ52_09375 PF03606 C4-dicarboxylate anaerobic carrier IUJ52_09380 PF03605 Anaerobic c4-dicarboxylate membrane transporter IUJ52_09385 PF10415 Fumarase C C-terminus IUJ52_09385 PF00206 Lyase IUJ52_09390 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_09395 PF04186 FxsA cytoplasmic membrane protein IUJ52_09400 PF00588 SpoU rRNA Methylase family IUJ52_09405 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IUJ52_09405 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IUJ52_09410 PF16527 Two-component sensor protein CpxA, periplasmic domain IUJ52_09410 PF00672 HAMP domain IUJ52_09410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_09410 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_09415 PF00072 Response regulator receiver domain IUJ52_09415 PF00486 Transcriptional regulatory protein, C terminal IUJ52_09425 PF16916 Dimerisation domain of Zinc Transporter IUJ52_09425 PF01545 Cation efflux family IUJ52_09430 PF00365 Phosphofructokinase IUJ52_09435 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded IUJ52_09440 PF06005 Cell division protein ZapB IUJ52_09445 PF02219 Methylenetetrahydrofolate reductase IUJ52_09450 PF00742 Homoserine dehydrogenase IUJ52_09450 PF03447 Homoserine dehydrogenase, NAD binding domain IUJ52_09450 PF00696 Amino acid kinase family IUJ52_09455 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ52_09460 PF01340 Met Apo-repressor, MetJ IUJ52_09465 PF00390 Malic enzyme, N-terminal domain IUJ52_09465 PF03949 Malic enzyme, NAD binding domain IUJ52_09470 PF01197 Ribosomal protein L31 IUJ52_09475 PF18074 Primosomal protein N C-terminal domain IUJ52_09475 PF00270 DEAD/DEAH box helicase IUJ52_09475 PF00271 Helicase conserved C-terminal domain IUJ52_09475 PF17764 3′ DNA-binding domain (3′BD) IUJ52_09475 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IUJ52_09480 PF00356 Bacterial regulatory proteins, lacI family IUJ52_09490 PF00227 Proteasome subunit IUJ52_09495 PF00004 ATPase family associated with various cellular activities (AAA) IUJ52_09495 PF07724 AAA domain (Cdc48 subfamily) IUJ52_09495 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ52_09500 PF01040 UbiA prenyltransferase family IUJ52_09505 PF03737 Aldolase/RraA IUJ52_09510 PF01554 MatE IUJ52_09515 PF00121 Triosephosphate isomerase IUJ52_09540 PF00166 Chaperonin 10 Kd subunit IUJ52_09545 PF00118 TCP-1/cpn60 chaperonin family IUJ52_09550 PF00005 ABC transporter IUJ52_09560 PF02308 MgtC family IUJ52_09565 PF04055 Radical SAM superfamily IUJ52_09570 PF01132 Elongation factor P (EF-P) OB domain IUJ52_09570 PF08207 Elongation factor P (EF-P) KOW-like domain IUJ52_09570 PF09285 Elongation factor P, C-terminal IUJ52_09575 PF02313 Fumarate reductase subunit D IUJ52_09580 PF02300 Fumarate reductase subunit C IUJ52_09585 PF13183 4Fe-4S dicluster domain IUJ52_09585 PF13085 2Fe-2S iron-sulfur cluster binding domain IUJ52_09590 PF00890 FAD binding domain IUJ52_09590 PF02910 Fumarate reductase flavoprotein C-term IUJ52_09595 PF00152 tRNA synthetases class II (D, K and N) IUJ52_09600 PF00581 Rhodanese-like domain IUJ52_09605 PF02556 Preprotein translocase subunit SecB IUJ52_09610 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IUJ52_09610 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IUJ52_09615 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ52_09615 PF06426 Serine acetyltransferase, N-terminal IUJ52_09625 PF00311 Phosphoenolpyruvate carboxylase IUJ52_09630 PF07687 Peptidase dimerisation domain IUJ52_09630 PF01546 Peptidase family M20/M25/M40 IUJ52_09635 PF01118 Semialdehyde dehydrogenase, NAD binding domain IUJ52_09635 PF02774 Semialdehyde dehydrogenase, dimerisation domain IUJ52_09640 PF00696 Amino acid kinase family IUJ52_09645 PF00764 Arginosuccinate synthase IUJ52_09650 PF00583 Acetyltransferase (GNAT) family IUJ52_09650 PF14698 Argininosuccinate lyase C-terminal IUJ52_09650 PF00206 Lyase IUJ52_09660 PF00462 Glutaredoxin IUJ52_09660 PF08534 Redoxin IUJ52_09665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_09665 PF03466 LysR substrate binding domain IUJ52_09670 PF00905 Penicillin binding protein transpeptidase domain IUJ52_09670 PF00912 Transglycosylase IUJ52_09670 PF17092 Penicillin-binding protein OB-like domain IUJ52_09690 PF04351 Pilus assembly protein, PilP IUJ52_09695 PF11741 AMIN domain IUJ52_09695 PF00263 Bacterial type II and III secretion system protein IUJ52_09695 PF03958 Bacterial type II/III secretion system short domain IUJ52_09695 PF07660 Secretin and TonB N terminus short domain IUJ52_09700 PF01202 Shikimate kinase IUJ52_09705 PF01761 3-dehydroquinate synthase IUJ52_09715 PF02086 D12 class N6 adenine-specific DNA methyltransferase IUJ52_09720 PF00834 Ribulose-phosphate 3 epimerase family IUJ52_09725 PF13419 Haloacid dehalogenase-like hydrolase IUJ52_09730 PF00579 tRNA synthetases class I (W and Y) IUJ52_09740 PF00117 Glutamine amidotransferase class-I IUJ52_09745 PF00202 Aminotransferase class-III IUJ52_09750 PF04958 Arginine N-succinyltransferase beta subunit IUJ52_09755 PF00171 Aldehyde dehydrogenase family IUJ52_09765 PF00027 Cyclic nucleotide-binding domain IUJ52_09765 PF13545 Crp-like helix-turn-helix domain IUJ52_09770 PF00485 Phosphoribulokinase / Uridine kinase family IUJ52_09775 PF06794 Uncharacterised protein family (UPF0270) IUJ52_09780 PF00561 alpha/beta hydrolase fold IUJ52_09790 PF00005 ABC transporter IUJ52_09790 PF12848 ABC transporter IUJ52_09795 PF02525 Flavodoxin-like fold IUJ52_09800 PF00999 Sodium/hydrogen exchanger family IUJ52_09800 PF02254 TrkA-N domain IUJ52_09805 PF09526 Probable metal-binding protein (DUF2387) IUJ52_09810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUJ52_09815 PF01112 Asparaginase IUJ52_09820 PF00709 Adenylosuccinate synthetase IUJ52_09825 PF08238 Sel1 repeat IUJ52_09830 PF00884 Sulfatase IUJ52_09830 PF11893 Domain of unknown function (DUF3413) IUJ52_09835 PF08206 Ribonuclease B OB domain IUJ52_09835 PF00773 RNB domain IUJ52_09835 PF00575 S1 RNA binding domain IUJ52_09835 PF17876 Cold shock domain IUJ52_09835 PF08461 Ribonuclease R winged-helix domain IUJ52_09840 PF00588 SpoU rRNA Methylase family IUJ52_09840 PF08032 RNA 2'-O ribose methyltransferase substrate binding IUJ52_09845 PF00338 Ribosomal protein S10p/S20e IUJ52_09850 PF00297 Ribosomal protein L3 IUJ52_09855 PF00573 Ribosomal protein L4/L1 family IUJ52_09860 PF00276 Ribosomal protein L23 IUJ52_09865 PF00181 Ribosomal Proteins L2, RNA binding domain IUJ52_09865 PF03947 Ribosomal Proteins L2, C-terminal domain IUJ52_09870 PF00203 Ribosomal protein S19 IUJ52_09875 PF00237 Ribosomal protein L22p/L17e IUJ52_09880 PF00189 Ribosomal protein S3, C-terminal domain IUJ52_09880 PF07650 KH domain IUJ52_09885 PF00252 Ribosomal protein L16p/L10e IUJ52_09890 PF00831 Ribosomal L29 protein IUJ52_09895 PF00366 Ribosomal protein S17 IUJ52_09900 PF00238 Ribosomal protein L14p/L23e IUJ52_09905 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IUJ52_09905 PF00467 KOW motif IUJ52_09910 PF00673 ribosomal L5P family C-terminus IUJ52_09910 PF00281 Ribosomal protein L5 IUJ52_09915 PF00253 Ribosomal protein S14p/S29e IUJ52_09920 PF00410 Ribosomal protein S8 IUJ52_09925 PF00347 Ribosomal protein L6 IUJ52_09930 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IUJ52_09935 PF00333 Ribosomal protein S5, N-terminal domain IUJ52_09935 PF03719 Ribosomal protein S5, C-terminal domain IUJ52_09940 PF00327 Ribosomal protein L30p/L7e IUJ52_09945 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IUJ52_09950 PF00344 SecY translocase IUJ52_09955 PF00444 Ribosomal protein L36 IUJ52_09960 PF00416 Ribosomal protein S13/S18 IUJ52_09965 PF00411 Ribosomal protein S11 IUJ52_09970 PF01479 S4 domain IUJ52_09970 PF00163 Ribosomal protein S4/S9 N-terminal domain IUJ52_09975 PF01000 RNA polymerase Rpb3/RpoA insert domain IUJ52_09975 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IUJ52_09975 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IUJ52_09980 PF01196 Ribosomal protein L17 IUJ52_09990 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IUJ52_09990 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUJ52_09995 PF04225 Opacity-associated protein A LysM-like domain IUJ52_09995 PF08525 Opacity-associated protein A N-terminal motif IUJ52_10005 PF13673 Acetyltransferase (GNAT) domain IUJ52_10010 PF00270 DEAD/DEAH box helicase IUJ52_10010 PF03880 DbpA RNA binding domain IUJ52_10010 PF00271 Helicase conserved C-terminal domain IUJ52_10020 PF02872 5'-nucleotidase, C-terminal domain IUJ52_10020 PF00149 Calcineurin-like phosphoesterase IUJ52_10025 PF10414 Sirohaem synthase dimerisation region IUJ52_10025 PF14824 Sirohaem biosynthesis protein central IUJ52_10025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUJ52_10030 PF01507 Phosphoadenosine phosphosulfate reductase family IUJ52_10035 PF00009 Elongation factor Tu GTP binding domain IUJ52_10040 PF03600 Citrate transporter IUJ52_10040 PF02080 TrkA-C domain IUJ52_10065 PF00005 ABC transporter IUJ52_10065 PF02687 FtsX-like permease family IUJ52_10065 PF12704 MacB-like periplasmic core domain IUJ52_10080 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) IUJ52_10085 PF01625 Peptide methionine sulfoxide reductase IUJ52_10090 PF17243 POTRA domain TamA domain 1 IUJ52_10090 PF07244 Surface antigen variable number repeat IUJ52_10090 PF01103 Surface antigen IUJ52_10095 PF04357 TamB, inner membrane protein subunit of TAM complex IUJ52_10100 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like IUJ52_10110 PF00719 Inorganic pyrophosphatase IUJ52_10115 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain IUJ52_10120 PF01225 Mur ligase family, catalytic domain IUJ52_10120 PF02875 Mur ligase family, glutamate ligase domain IUJ52_10120 PF08245 Mur ligase middle domain IUJ52_10125 PF02441 Flavoprotein IUJ52_10135 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_10140 PF00005 ABC transporter IUJ52_10145 PF04751 Protein of unknown function (DUF615) IUJ52_10150 PF01523 Putative modulator of DNA gyrase IUJ52_10155 PF00571 CBS domain IUJ52_10155 PF01769 Divalent cation transporter IUJ52_10155 PF03448 MgtE intracellular N domain IUJ52_10160 PF00381 PTS HPr component phosphorylation site IUJ52_10165 PF03668 P-loop ATPase protein family IUJ52_10170 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IUJ52_10175 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IUJ52_10180 PF04552 Sigma-54, DNA binding domain IUJ52_10180 PF00309 Sigma-54 factor, Activator interacting domain (AID) IUJ52_10180 PF04963 Sigma-54 factor, core binding domain IUJ52_10185 PF00005 ABC transporter IUJ52_10185 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ52_10190 PF03968 OstA-like protein IUJ52_10205 PF00571 CBS domain IUJ52_10205 PF01380 SIS domain IUJ52_10210 PF01699 Sodium/calcium exchanger protein IUJ52_10215 PF00005 ABC transporter IUJ52_10220 PF02405 Permease MlaE IUJ52_10225 PF02470 MlaD protein IUJ52_10230 PF05494 MlaC protein IUJ52_10235 PF13466 STAS domain IUJ52_10240 PF01722 BolA-like protein IUJ52_10245 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IUJ52_10250 PF01553 Acyltransferase IUJ52_10255 PF01042 Endoribonuclease L-PSP IUJ52_10260 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain IUJ52_10260 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain IUJ52_10265 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IUJ52_10265 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IUJ52_10270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IUJ52_10270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IUJ52_10275 PF02562 PhoH-like protein IUJ52_10275 PF13638 PIN domain IUJ52_10280 PF18337 RapA N-terminal Tudor like domain IUJ52_10280 PF18339 RapA N-terminal Tudor like domain 1 IUJ52_10280 PF12137 RNA polymerase recycling family C-terminal IUJ52_10280 PF00271 Helicase conserved C-terminal domain IUJ52_10280 PF00176 SNF2 family N-terminal domain IUJ52_10290 PF00849 RNA pseudouridylate synthase IUJ52_10295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ52_10295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ52_10300 PF08264 Anticodon-binding domain of tRNA IUJ52_10300 PF00133 tRNA synthetases class I (I, L, M and V) IUJ52_10300 PF10458 Valyl tRNA synthetase tRNA binding arm IUJ52_10310 PF00883 Cytosol aminopeptidase family, catalytic domain IUJ52_10310 PF02789 Cytosol aminopeptidase family, N-terminal domain IUJ52_10315 PF03739 Lipopolysaccharide export system permease LptF/LptG IUJ52_10320 PF03739 Lipopolysaccharide export system permease LptF/LptG IUJ52_10330 PF07694 5TMR of 5TMR-LYT IUJ52_10330 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_10345 PF03171 2OG-Fe(II) oxygenase superfamily IUJ52_10345 PF14226 non-haem dioxygenase in morphine synthesis N-terminal IUJ52_10355 PF00072 Response regulator receiver domain IUJ52_10400 PF00694 Aconitase C-terminal domain IUJ52_10405 PF00330 Aconitase family (aconitate hydratase) IUJ52_10410 PF00180 Isocitrate/isopropylmalate dehydrogenase IUJ52_10415 PF08502 LeuA allosteric (dimerisation) domain IUJ52_10415 PF00682 HMGL-like IUJ52_10425 PF01569 PAP2 superfamily IUJ52_10435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_10435 PF03466 LysR substrate binding domain IUJ52_10440 PF00501 AMP-binding enzyme IUJ52_10445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ52_10445 PF00205 Thiamine pyrophosphate enzyme, central domain IUJ52_10445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ52_10450 PF10369 Small subunit of acetolactate synthase IUJ52_10455 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ52_10455 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ52_10455 PF01842 ACT domain IUJ52_10460 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IUJ52_10465 PF01812 5-formyltetrahydrofolate cyclo-ligase family IUJ52_10475 PF05164 Cell division protein ZapA IUJ52_10480 PF03695 Uncharacterised protein family (UPF0149) IUJ52_10485 PF01494 FAD binding domain IUJ52_10490 PF01494 FAD binding domain IUJ52_10510 PF03937 Flavinator of succinate dehydrogenase IUJ52_10520 PF00890 FAD binding domain IUJ52_10520 PF02910 Fumarate reductase flavoprotein C-term IUJ52_10525 PF04542 Sigma-70 region 2 IUJ52_10525 PF08281 Sigma-70, region 4 IUJ52_10530 PF03872 Anti sigma-E protein RseA, N-terminal domain IUJ52_10530 PF03873 Anti sigma-E protein RseA, C-terminal domain IUJ52_10535 PF03888 MucB/RseB N-terminal domain IUJ52_10535 PF17188 MucB/RseB C-terminal domain IUJ52_10545 PF06421 GTP-binding protein LepA C-terminus IUJ52_10545 PF00679 Elongation factor G C-terminus IUJ52_10545 PF00009 Elongation factor Tu GTP binding domain IUJ52_10545 PF03144 Elongation factor Tu domain 2 IUJ52_10550 PF10502 Signal peptidase, peptidase S26 IUJ52_10555 PF14622 Ribonuclease-III-like IUJ52_10555 PF00035 Double-stranded RNA binding motif IUJ52_10560 PF07650 KH domain IUJ52_10560 PF01926 50S ribosome-binding GTPase IUJ52_10565 PF02565 Recombination protein O C terminal IUJ52_10565 PF11967 Recombination protein O N terminal IUJ52_10570 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IUJ52_10575 PF01648 4'-phosphopantetheinyl transferase superfamily IUJ52_10580 PF00672 HAMP domain IUJ52_10580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_10580 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_10580 PF01627 Hpt domain IUJ52_10580 PF00072 Response regulator receiver domain IUJ52_10580 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IUJ52_10585 PF05958 tRNA (Uracil-5-)-methyltransferase IUJ52_10585 PF01938 TRAM domain IUJ52_10590 PF02824 TGS domain IUJ52_10590 PF04607 Region found in RelA / SpoT proteins IUJ52_10590 PF13291 ACT domain IUJ52_10595 PF03819 MazG nucleotide pyrophosphohydrolase domain IUJ52_10600 PF00117 Glutamine amidotransferase class-I IUJ52_10600 PF06418 CTP synthase N-terminus IUJ52_10605 PF03952 Enolase, N-terminal domain IUJ52_10605 PF00113 Enolase, C-terminal TIM barrel domain IUJ52_10610 PF12627 Probable RNA and SrmB- binding site of polymerase A IUJ52_10610 PF01743 Poly A polymerase head domain IUJ52_10610 PF01966 HD domain IUJ52_10615 PF13401 AAA domain IUJ52_10615 PF01471 Putative peptidoglycan binding domain IUJ52_10625 PF08239 Bacterial SH3 domain IUJ52_10630 PF01384 Phosphate transporter family IUJ52_10635 PF01865 Protein of unknown function DUF47 IUJ52_10640 PF01928 CYTH domain IUJ52_10645 PF07885 Ion channel IUJ52_10650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_10650 PF00672 HAMP domain IUJ52_10650 PF02743 Cache domain IUJ52_10655 PF08335 GlnD PII-uridylyltransferase IUJ52_10655 PF03710 Glutamate-ammonia ligase adenylyltransferase IUJ52_10660 PF01467 Cytidylyltransferase-like IUJ52_10660 PF00294 pfkB family carbohydrate kinase IUJ52_10665 PF02321 Outer membrane efflux protein IUJ52_10670 PF00293 NUDIX domain IUJ52_10675 PF06853 Protein of unknown function (DUF1249) IUJ52_10680 PF00149 Calcineurin-like phosphoesterase IUJ52_10685 PF05728 Uncharacterised protein family (UPF0227) IUJ52_10690 PF00204 DNA gyrase B IUJ52_10690 PF01751 Toprim domain IUJ52_10690 PF00986 DNA gyrase B subunit, carboxyl terminus IUJ52_10690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_10695 PF03989 DNA gyrase C-terminal domain, beta-propeller IUJ52_10695 PF00521 DNA gyrase/topoisomerase IV, subunit A IUJ52_10700 PF03884 DNA gyrase inhibitor YacG IUJ52_10705 PF07072 Cell division protein IUJ52_10710 PF01121 Dephospho-CoA kinase IUJ52_10715 PF06750 Bacterial Peptidase A24 N-terminal domain IUJ52_10715 PF01478 Type IV leader peptidase family IUJ52_10720 PF00482 Type II secretion system (T2SS), protein F IUJ52_10725 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IUJ52_10725 PF00437 Type II/IV secretion system protein IUJ52_10730 PF07963 Prokaryotic N-terminal methylation motif IUJ52_10730 PF00114 Pilin (bacterial filament) IUJ52_10735 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IUJ52_10735 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IUJ52_10740 PF01510 N-acetylmuramoyl-L-alanine amidase IUJ52_10745 PF00258 Flavodoxin IUJ52_10750 PF00589 Phage integrase family IUJ52_10750 PF02899 Phage integrase, N-terminal SAM-like domain IUJ52_10755 PF10411 Disulfide bond isomerase protein N-terminus IUJ52_10755 PF13098 Thioredoxin-like domain IUJ52_10760 PF01368 DHH family IUJ52_10760 PF02272 DHHA1 domain IUJ52_10760 PF17768 RecJ OB domain IUJ52_10765 PF00392 Bacterial regulatory proteins, gntR family IUJ52_10765 PF07729 FCD domain IUJ52_10770 PF17831 Pyruvate dehydrogenase E1 component middle domain IUJ52_10770 PF00456 Transketolase, thiamine diphosphate binding domain IUJ52_10775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IUJ52_10775 PF00364 Biotin-requiring enzyme IUJ52_10775 PF02817 e3 binding domain IUJ52_10780 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_10780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ52_10785 PF00440 Bacterial regulatory proteins, tetR family IUJ52_10790 PF00156 Phosphoribosyl transferase domain IUJ52_10795 PF00484 Carbonic anhydrase IUJ52_10800 PF00005 ABC transporter IUJ52_10805 PF01061 ABC-2 type transporter IUJ52_10810 PF02569 Pantoate-beta-alanine ligase IUJ52_10815 PF02548 Ketopantoate hydroxymethyltransferase IUJ52_10820 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IUJ52_10825 PF12627 Probable RNA and SrmB- binding site of polymerase A IUJ52_10825 PF01743 Poly A polymerase head domain IUJ52_10825 PF12626 Polymerase A arginine-rich C-terminus IUJ52_10830 PF00749 tRNA synthetases class I (E and Q), catalytic domain IUJ52_10835 PF01258 Prokaryotic dksA/traR C4-type zinc finger IUJ52_10840 PF03749 Sugar fermentation stimulation protein RE domain IUJ52_10840 PF17746 SfsA N-terminal OB domain IUJ52_10845 PF04408 Helicase associated domain (HA2) IUJ52_10845 PF00271 Helicase conserved C-terminal domain IUJ52_10845 PF08482 ATP-dependent helicase C-terminal IUJ52_10845 PF00270 DEAD/DEAH box helicase IUJ52_10850 PF00905 Penicillin binding protein transpeptidase domain IUJ52_10850 PF00912 Transglycosylase IUJ52_10850 PF14814 Bifunctional transglycosylase second domain IUJ52_10855 PF01734 Patatin-like phospholipase IUJ52_10860 PF11791 Aconitate B N-terminal domain IUJ52_10860 PF06434 Aconitate hydratase 2 N-terminus IUJ52_10860 PF00330 Aconitase family (aconitate hydratase) IUJ52_10865 PF06062 Uncharacterised protein family (UPF0231) IUJ52_10870 PF00543 Nitrogen regulatory protein P-II IUJ52_10875 PF00909 Ammonium Transporter Family IUJ52_10880 PF13416 Bacterial extracellular solute-binding protein IUJ52_10890 PF00005 ABC transporter IUJ52_10895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUJ52_10895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUJ52_10895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUJ52_10895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUJ52_10900 PF06165 Glycosyltransferase family 36 IUJ52_10900 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain IUJ52_10905 PF02838 Glycosyl hydrolase family 20, domain 2 IUJ52_10905 PF00728 Glycosyl hydrolase family 20, catalytic domain IUJ52_10910 PF01869 BadF/BadG/BcrA/BcrD ATPase family IUJ52_10920 PF00005 ABC transporter IUJ52_10920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ52_10925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ52_10925 PF00005 ABC transporter IUJ52_10930 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ52_10930 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_10935 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_10940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ52_10945 PF00072 Response regulator receiver domain IUJ52_10945 PF09308 LuxQ, periplasmic IUJ52_10945 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_10945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_10950 PF08468 Methyltransferase small domain N-terminal IUJ52_10950 PF05175 Methyltransferase small domain IUJ52_10955 PF01594 AI-2E family transporter IUJ52_10960 PF00202 Aminotransferase class-III IUJ52_10965 PF01521 Iron-sulphur cluster biosynthesis IUJ52_10975 PF00873 AcrB/AcrD/AcrF family IUJ52_10980 PF04225 Opacity-associated protein A LysM-like domain IUJ52_10980 PF01551 Peptidase family M23 IUJ52_10985 PF01479 S4 domain IUJ52_10985 PF00579 tRNA synthetases class I (W and Y) IUJ52_10995 PF03448 MgtE intracellular N domain IUJ52_10995 PF01769 Divalent cation transporter IUJ52_10995 PF00571 CBS domain IUJ52_11000 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family IUJ52_11005 PF13609 Gram-negative porin IUJ52_11010 PF01272 Transcription elongation factor, GreA/GreB, C-term IUJ52_11010 PF03449 Transcription elongation factor, N-terminal IUJ52_11015 PF01985 CRS1 / YhbY (CRM) domain IUJ52_11020 PF01728 FtsJ-like methyltransferase IUJ52_11025 PF00004 ATPase family associated with various cellular activities (AAA) IUJ52_11025 PF01434 Peptidase family M41 IUJ52_11025 PF17862 AAA+ lid domain IUJ52_11025 PF06480 FtsH Extracellular IUJ52_11030 PF00809 Pterin binding enzyme IUJ52_11035 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUJ52_11035 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUJ52_11035 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUJ52_11035 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUJ52_11040 PF03840 Preprotein translocase SecG subunit IUJ52_11055 PF17384 RimP C-terminal SH3 domain IUJ52_11055 PF02576 RimP N-terminal domain IUJ52_11060 PF00575 S1 RNA binding domain IUJ52_11060 PF13184 NusA-like KH domain IUJ52_11060 PF08529 NusA N-terminal domain IUJ52_11065 PF11987 Translation-initiation factor 2 IUJ52_11065 PF08364 Bacterial translation initiation factor IF-2 associated region IUJ52_11065 PF04760 Translation initiation factor IF-2, N-terminal region IUJ52_11065 PF00009 Elongation factor Tu GTP binding domain IUJ52_11070 PF02033 Ribosome-binding factor A IUJ52_11075 PF01509 TruB family pseudouridylate synthase (N terminal domain) IUJ52_11075 PF16198 tRNA pseudouridylate synthase B C-terminal domain IUJ52_11075 PF09157 Pseudouridine synthase II TruB, C-terminal IUJ52_11080 PF00312 Ribosomal protein S15 IUJ52_11085 PF01138 3' exoribonuclease family, domain 1 IUJ52_11085 PF03725 3' exoribonuclease family, domain 2 IUJ52_11085 PF00575 S1 RNA binding domain IUJ52_11085 PF00013 KH domain IUJ52_11085 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IUJ52_11090 PF07719 Tetratricopeptide repeat IUJ52_11090 PF13181 Tetratricopeptide repeat IUJ52_11100 PF01554 MatE IUJ52_11105 PF01136 Peptidase family U32 IUJ52_11110 PF01136 Peptidase family U32 IUJ52_11115 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_11115 PF03707 Bacterial signalling protein N terminal repeat IUJ52_11115 PF00563 EAL domain IUJ52_11120 PF02036 SCP-2 sterol transfer family IUJ52_11125 PF13508 Acetyltransferase (GNAT) domain IUJ52_11140 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_11140 PF03707 Bacterial signalling protein N terminal repeat IUJ52_11140 PF00563 EAL domain IUJ52_11145 PF00009 Elongation factor Tu GTP binding domain IUJ52_11145 PF03144 Elongation factor Tu domain 2 IUJ52_11145 PF16658 Class II release factor RF3, C-terminal domain IUJ52_11150 PF00271 Helicase conserved C-terminal domain IUJ52_11150 PF00270 DEAD/DEAH box helicase IUJ52_11155 PF05175 Methyltransferase small domain IUJ52_11160 PF05525 Branched-chain amino acid transport protein IUJ52_11170 PF00152 tRNA synthetases class II (D, K and N) IUJ52_11170 PF01336 OB-fold nucleic acid binding domain IUJ52_11175 PF00158 Sigma-54 interaction domain IUJ52_11175 PF00072 Response regulator receiver domain IUJ52_11175 PF02954 Bacterial regulatory protein, Fis family IUJ52_11185 PF00248 Aldo/keto reductase family IUJ52_11195 PF02976 DNA mismatch repair enzyme MutH IUJ52_11200 PF00293 NUDIX domain IUJ52_11205 PF00391 PEP-utilising enzyme, mobile domain IUJ52_11205 PF02896 PEP-utilising enzyme, TIM barrel domain IUJ52_11205 PF01590 GAF domain IUJ52_11205 PF05524 PEP-utilising enzyme, N-terminal IUJ52_11210 PF01925 Sulfite exporter TauE/SafE IUJ52_11215 PF01790 Prolipoprotein diacylglyceryl transferase IUJ52_11220 PF00303 Thymidylate synthase IUJ52_11225 PF02690 Na+/Pi-cotransporter IUJ52_11230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_11230 PF03466 LysR substrate binding domain IUJ52_11235 PF01022 Bacterial regulatory protein, arsR family IUJ52_11240 PF01649 Ribosomal protein S20 IUJ52_11245 PF03023 Lipid II flippase MurJ IUJ52_11250 PF06574 FAD synthetase IUJ52_11250 PF01687 Riboflavin kinase IUJ52_11255 PF00133 tRNA synthetases class I (I, L, M and V) IUJ52_11255 PF08264 Anticodon-binding domain of tRNA IUJ52_11255 PF06827 Zinc finger found in FPG and IleRS IUJ52_11260 PF01252 Signal peptidase (SPase) II IUJ52_11265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUJ52_11270 PF02401 LytB protein IUJ52_11275 PF02554 Carbon starvation protein CstA IUJ52_11290 PF13580 SIS domain IUJ52_11295 PF03702 Anhydro-N-acetylmuramic acid kinase IUJ52_11300 PF00933 Glycosyl hydrolase family 3 N terminal domain IUJ52_11305 PF00072 Response regulator receiver domain IUJ52_11305 PF04397 LytTr DNA-binding domain IUJ52_11310 PF07694 5TMR of 5TMR-LYT IUJ52_11310 PF06580 Histidine kinase IUJ52_11315 PF00793 DAHP synthetase I family IUJ52_11320 PF01817 Chorismate mutase type II IUJ52_11320 PF02153 Prephenate dehydrogenase IUJ52_11325 PF07238 PilZ domain IUJ52_11330 PF00005 ABC transporter IUJ52_11330 PF12848 ABC transporter IUJ52_11335 PF01464 Transglycosylase SLT domain IUJ52_11335 PF14718 Soluble lytic murein transglycosylase L domain IUJ52_11340 PF01371 Trp repressor protein IUJ52_11345 PF01931 Protein of unknown function DUF84 IUJ52_11350 PF00563 EAL domain IUJ52_11350 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_11355 PF13416 Bacterial extracellular solute-binding protein IUJ52_11360 PF01817 Chorismate mutase type II IUJ52_11360 PF00800 Prephenate dehydratase IUJ52_11365 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IUJ52_11370 PF01464 Transglycosylase SLT domain IUJ52_11375 PF13525 Outer membrane lipoprotein IUJ52_11380 PF00849 RNA pseudouridylate synthase IUJ52_11380 PF01479 S4 domain IUJ52_11385 PF02578 Multi-copper polyphenol oxidoreductase laccase IUJ52_11390 PF17871 AAA lid domain IUJ52_11390 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ52_11390 PF00004 ATPase family associated with various cellular activities (AAA) IUJ52_11390 PF07724 AAA domain (Cdc48 subfamily) IUJ52_11390 PF02861 Clp amino terminal domain, pathogenicity island component IUJ52_11400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IUJ52_11405 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_11410 PF00005 ABC transporter IUJ52_11415 PF09084 NMT1/THI5 like IUJ52_11420 PF01979 Amidohydrolase family IUJ52_11455 PF01738 Dienelactone hydrolase family IUJ52_11465 PF00881 Nitroreductase family IUJ52_11470 PF07690 Major Facilitator Superfamily IUJ52_11475 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IUJ52_11485 PF05175 Methyltransferase small domain IUJ52_11490 PF01722 BolA-like protein IUJ52_11495 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) IUJ52_11495 PF11973 NQRA C-terminal domain IUJ52_11500 PF03116 NQR2, RnfD, RnfE family IUJ52_11505 PF04205 FMN-binding domain IUJ52_11510 PF02508 Rnf-Nqr subunit, membrane protein IUJ52_11515 PF02508 Rnf-Nqr subunit, membrane protein IUJ52_11520 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ52_11520 PF00175 Oxidoreductase NAD-binding domain IUJ52_11520 PF00970 Oxidoreductase FAD-binding domain IUJ52_11525 PF02424 ApbE family IUJ52_11540 PF00817 impB/mucB/samB family IUJ52_11540 PF11799 impB/mucB/samB family C-terminal domain IUJ52_11540 PF11798 IMS family HHH motif IUJ52_11550 PF00360 Phytochrome region IUJ52_11550 PF01590 GAF domain IUJ52_11550 PF00563 EAL domain IUJ52_11550 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_11555 PF00209 Sodium:neurotransmitter symporter family IUJ52_11565 PF08443 RimK-like ATP-grasp domain IUJ52_11565 PF18030 RimK PreATP-grasp domain IUJ52_11570 PF18030 RimK PreATP-grasp domain IUJ52_11570 PF08443 RimK-like ATP-grasp domain IUJ52_11575 PF07687 Peptidase dimerisation domain IUJ52_11575 PF01546 Peptidase family M20/M25/M40 IUJ52_11580 PF00155 Aminotransferase class I and II IUJ52_11580 PF00392 Bacterial regulatory proteins, gntR family IUJ52_11585 PF00202 Aminotransferase class-III IUJ52_11590 PF00171 Aldehyde dehydrogenase family IUJ52_11595 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ52_11605 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ52_11610 PF00860 Permease family IUJ52_11615 PF00156 Phosphoribosyl transferase domain IUJ52_11620 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) IUJ52_11625 PF07417 Sigma factor-binding transcriptional regulator Crl IUJ52_11630 PF01472 PUA domain IUJ52_11630 PF00696 Amino acid kinase family IUJ52_11635 PF00171 Aldehyde dehydrogenase family IUJ52_11640 PF03477 ATP cone domain IUJ52_11645 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IUJ52_11645 PF01872 RibD C-terminal domain IUJ52_11650 PF00677 Lumazine binding domain IUJ52_11655 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IUJ52_11655 PF00925 GTP cyclohydrolase II IUJ52_11660 PF00885 6,7-dimethyl-8-ribityllumazine synthase IUJ52_11665 PF01029 NusB family IUJ52_11670 PF00586 AIR synthase related protein, N-terminal domain IUJ52_11670 PF02769 AIR synthase related protein, C-terminal domain IUJ52_11675 PF04608 Phosphatidylglycerophosphatase A IUJ52_11680 PF11944 Protein of unknown function (DUF3461) IUJ52_11685 PF08335 GlnD PII-uridylyltransferase IUJ52_11685 PF01966 HD domain IUJ52_11685 PF01909 Nucleotidyltransferase domain IUJ52_11690 PF00557 Metallopeptidase family M24 IUJ52_11695 PF00318 Ribosomal protein S2 IUJ52_11700 PF00889 Elongation factor TS IUJ52_11705 PF00696 Amino acid kinase family IUJ52_11710 PF01765 Ribosome recycling factor IUJ52_11715 PF01255 Putative undecaprenyl diphosphate synthase IUJ52_11725 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IUJ52_11725 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IUJ52_11725 PF13288 DXP reductoisomerase C-terminal domain IUJ52_11730 PF17820 PDZ domain IUJ52_11730 PF02163 Peptidase family M50 IUJ52_11735 PF07244 Surface antigen variable number repeat IUJ52_11735 PF01103 Surface antigen IUJ52_11740 PF03938 Outer membrane protein (OmpH-like) IUJ52_11745 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ52_11745 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IUJ52_11750 PF07977 FabA-like domain IUJ52_11755 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IUJ52_11755 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ52_11760 PF02684 Lipid-A-disaccharide synthetase IUJ52_11765 PF01351 Ribonuclease HII IUJ52_11770 PF07733 Bacterial DNA polymerase III alpha NTPase domain IUJ52_11770 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IUJ52_11770 PF02811 PHP domain IUJ52_11770 PF01336 OB-fold nucleic acid binding domain IUJ52_11770 PF14579 Helix-hairpin-helix motif IUJ52_11775 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IUJ52_11780 PF11734 TilS substrate C-terminal domain IUJ52_11780 PF09179 TilS substrate binding domain IUJ52_11780 PF01171 PP-loop family IUJ52_11785 PF00034 Cytochrome c IUJ52_11790 PF00543 Nitrogen regulatory protein P-II IUJ52_11795 PF03372 Endonuclease/Exonuclease/phosphatase family IUJ52_11805 PF01476 LysM domain IUJ52_11805 PF01464 Transglycosylase SLT domain IUJ52_11810 PF16123 Hydroxyacylglutathione hydrolase C-terminus IUJ52_11810 PF00753 Metallo-beta-lactamase superfamily IUJ52_11815 PF08241 Methyltransferase domain IUJ52_11820 PF00075 RNase H IUJ52_11825 PF00929 Exonuclease IUJ52_11835 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ52_11835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ52_11835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ52_11835 PF09317 Domain of unknown function (DUF1974) IUJ52_11840 PF13580 SIS domain IUJ52_11845 PF13230 Glutamine amidotransferases class-II IUJ52_11850 PF00551 Formyl transferase IUJ52_11855 PF02769 AIR synthase related protein, C-terminal domain IUJ52_11855 PF00586 AIR synthase related protein, N-terminal domain IUJ52_11865 PF00849 RNA pseudouridylate synthase IUJ52_11865 PF01479 S4 domain IUJ52_11870 PF01713 Smr domain IUJ52_11890 PF00728 Glycosyl hydrolase family 20, catalytic domain IUJ52_11890 PF02838 Glycosyl hydrolase family 20, domain 2 IUJ52_11890 PF03173 Putative carbohydrate binding domain IUJ52_11890 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain IUJ52_11900 PF00403 Heavy-metal-associated domain IUJ52_11905 PF00749 tRNA synthetases class I (E and Q), catalytic domain IUJ52_11910 PF00691 OmpA family IUJ52_11910 PF01389 OmpA-like transmembrane domain IUJ52_11945 PF04316 Anti-sigma-28 factor, FlgM IUJ52_11955 PF00072 Response regulator receiver domain IUJ52_11955 PF01584 CheW-like domain IUJ52_11960 PF03705 CheR methyltransferase, all-alpha domain IUJ52_11960 PF01739 CheR methyltransferase, SAM binding domain IUJ52_11965 PF00460 Flagella basal body rod protein IUJ52_11970 PF00460 Flagella basal body rod protein IUJ52_11970 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_11975 PF03963 Flagellar hook capping protein - N-terminal region IUJ52_11975 PF13860 FlgD Ig-like domain IUJ52_11975 PF13861 FlgD Tudor-like domain IUJ52_11980 PF07559 Flagellar basal body protein FlaE IUJ52_11980 PF00460 Flagella basal body rod protein IUJ52_11980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_11985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_11985 PF00460 Flagella basal body rod protein IUJ52_11990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_11990 PF00460 Flagella basal body rod protein IUJ52_11995 PF02107 Flagellar L-ring protein IUJ52_12000 PF02119 Flagellar P-ring protein IUJ52_12005 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase IUJ52_12005 PF10135 Rod binding protein IUJ52_12010 PF07196 Flagellin hook IN motif IUJ52_12010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_12015 PF00669 Bacterial flagellin N-terminal helical region IUJ52_12020 PF00669 Bacterial flagellin N-terminal helical region IUJ52_12020 PF07196 Flagellin hook IN motif IUJ52_12020 PF00700 Bacterial flagellin C-terminal helical region IUJ52_12030 PF00700 Bacterial flagellin C-terminal helical region IUJ52_12030 PF07196 Flagellin hook IN motif IUJ52_12030 PF00669 Bacterial flagellin N-terminal helical region IUJ52_12120 PF06071 Protein of unknown function (DUF933) IUJ52_12120 PF01926 50S ribosome-binding GTPase IUJ52_12125 PF01195 Peptidyl-tRNA hydrolase IUJ52_12130 PF14572 Phosphoribosyl synthetase-associated domain IUJ52_12130 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IUJ52_12135 PF00288 GHMP kinases N terminal domain IUJ52_12135 PF08544 GHMP kinases C terminal IUJ52_12140 PF03550 Outer membrane lipoprotein LolB IUJ52_12145 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IUJ52_12145 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IUJ52_12145 PF01488 Shikimate / quinate 5-dehydrogenase IUJ52_12150 PF03462 PCRF domain IUJ52_12150 PF00472 RF-1 domain IUJ52_12155 PF13847 Methyltransferase domain IUJ52_12155 PF17827 PrmC N-terminal domain IUJ52_12160 PF04247 Invasion gene expression up-regulator, SirB IUJ52_12165 PF13369 Transglutaminase-like superfamily IUJ52_12170 PF00793 DAHP synthetase I family IUJ52_12175 PF02872 5'-nucleotidase, C-terminal domain IUJ52_12175 PF00149 Calcineurin-like phosphoesterase IUJ52_12180 PF04073 Aminoacyl-tRNA editing domain IUJ52_12185 PF00860 Permease family IUJ52_12200 PF03358 NADPH-dependent FMN reductase IUJ52_12205 PF03960 ArsC family IUJ52_12210 PF13181 Tetratricopeptide repeat IUJ52_12210 PF01435 Peptidase family M48 IUJ52_12220 PF01594 AI-2E family transporter IUJ52_12225 PF02743 Cache domain IUJ52_12225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_12225 PF00672 HAMP domain IUJ52_12230 PF00578 AhpC/TSA family IUJ52_12235 PF01842 ACT domain IUJ52_12240 PF00701 Dihydrodipicolinate synthetase family IUJ52_12245 PF06804 NlpB/DapX lipoprotein IUJ52_12255 PF02557 D-alanyl-D-alanine carboxypeptidase IUJ52_12260 PF07687 Peptidase dimerisation domain IUJ52_12260 PF01546 Peptidase family M20/M25/M40 IUJ52_12265 PF03960 ArsC family IUJ52_12275 PF16363 GDP-mannose 4,6 dehydratase IUJ52_12280 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain IUJ52_12280 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain IUJ52_12285 PF08544 GHMP kinases C terminal IUJ52_12285 PF00288 GHMP kinases N terminal domain IUJ52_12285 PF10509 Galactokinase galactose-binding signature IUJ52_12290 PF00356 Bacterial regulatory proteins, lacI family IUJ52_12300 PF00571 CBS domain IUJ52_12305 PF00474 Sodium:solute symporter family IUJ52_12315 PF11143 Protein of unknown function (DUF2919) IUJ52_12320 PF04261 Dyp-type peroxidase family IUJ52_12325 PF00700 Bacterial flagellin C-terminal helical region IUJ52_12325 PF07196 Flagellin hook IN motif IUJ52_12325 PF00669 Bacterial flagellin N-terminal helical region IUJ52_12330 PF00669 Bacterial flagellin N-terminal helical region IUJ52_12330 PF00700 Bacterial flagellin C-terminal helical region IUJ52_12330 PF07196 Flagellin hook IN motif IUJ52_12335 PF00669 Bacterial flagellin N-terminal helical region IUJ52_12335 PF00700 Bacterial flagellin C-terminal helical region IUJ52_12335 PF07196 Flagellin hook IN motif IUJ52_12340 PF03646 FlaG protein IUJ52_12345 PF07196 Flagellin hook IN motif IUJ52_12345 PF07195 Flagellar hook-associated protein 2 C-terminus IUJ52_12345 PF02465 Flagellar hook-associated protein 2 N-terminus IUJ52_12355 PF02561 Flagellar protein FliS IUJ52_12360 PF00158 Sigma-54 interaction domain IUJ52_12360 PF02954 Bacterial regulatory protein, Fis family IUJ52_12360 PF06490 Flagellar regulatory protein FleQ IUJ52_12365 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_12365 PF13188 PAS domain IUJ52_12365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_12370 PF02954 Bacterial regulatory protein, Fis family IUJ52_12370 PF00072 Response regulator receiver domain IUJ52_12370 PF00158 Sigma-54 interaction domain IUJ52_12375 PF02049 Flagellar hook-basal body complex protein FliE IUJ52_12380 PF01514 Secretory protein of YscJ/FliF family IUJ52_12380 PF08345 Flagellar M-ring protein C-terminal IUJ52_12385 PF14841 FliG middle domain IUJ52_12385 PF14842 FliG N-terminal domain IUJ52_12385 PF01706 FliG C-terminal domain IUJ52_12395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ52_12395 PF18269 T3SS EscN ATPase C-terminal domain IUJ52_12415 PF02154 Flagellar motor switch protein FliM IUJ52_12415 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IUJ52_12420 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IUJ52_12425 PF04347 Flagellar biosynthesis protein, FliO IUJ52_12430 PF00813 FliP family IUJ52_12435 PF01313 Bacterial export proteins, family 3 IUJ52_12440 PF01311 Bacterial export proteins, family 1 IUJ52_12445 PF01312 FlhB HrpN YscU SpaS Family IUJ52_12450 PF01713 Smr domain IUJ52_12455 PF05175 Methyltransferase small domain IUJ52_12460 PF01264 Chorismate synthase IUJ52_12465 PF03458 UPF0126 domain IUJ52_12470 PF04315 Elongation factor P hydroxylase IUJ52_12475 PF08891 YfcL protein IUJ52_12485 PF01266 FAD dependent oxidoreductase IUJ52_12485 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IUJ52_12490 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ52_12490 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ52_12495 PF11890 Domain of unknown function (DUF3410) IUJ52_12495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ52_12495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ52_12500 PF01118 Semialdehyde dehydrogenase, NAD binding domain IUJ52_12500 PF02774 Semialdehyde dehydrogenase, dimerisation domain IUJ52_12505 PF01475 Ferric uptake regulator family IUJ52_12515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_12515 PF03466 LysR substrate binding domain IUJ52_12520 PF03788 LrgA family IUJ52_12525 PF04172 LrgB-like family IUJ52_12530 PF00258 Flavodoxin IUJ52_12540 PF12697 Alpha/beta hydrolase family IUJ52_12545 PF17206 SeqA protein N-terminal domain IUJ52_12545 PF03925 SeqA protein C-terminal domain IUJ52_12550 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUJ52_12550 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUJ52_12550 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUJ52_12550 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUJ52_12560 PF01784 NIF3 (NGG1p interacting factor 3) IUJ52_12565 PF00285 Citrate synthase, C-terminal domain IUJ52_12570 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IUJ52_12575 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IUJ52_12580 PF00890 FAD binding domain IUJ52_12580 PF02910 Fumarate reductase flavoprotein C-term IUJ52_12585 PF13085 2Fe-2S iron-sulfur cluster binding domain IUJ52_12590 PF16078 2-oxoglutarate dehydrogenase N-terminus IUJ52_12590 PF00676 Dehydrogenase E1 component IUJ52_12590 PF16870 2-oxoglutarate dehydrogenase C-terminal IUJ52_12590 PF02779 Transketolase, pyrimidine binding domain IUJ52_12595 PF02817 e3 binding domain IUJ52_12595 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IUJ52_12595 PF00364 Biotin-requiring enzyme IUJ52_12600 PF08442 ATP-grasp domain IUJ52_12600 PF00549 CoA-ligase IUJ52_12605 PF02629 CoA binding domain IUJ52_12605 PF00549 CoA-ligase IUJ52_12610 PF00950 ABC 3 transport family IUJ52_12615 PF00005 ABC transporter IUJ52_12620 PF01297 Zinc-uptake complex component A periplasmic IUJ52_12625 PF12833 Helix-turn-helix domain IUJ52_12630 PF04023 FeoA domain IUJ52_12635 PF07664 Ferrous iron transport protein B C terminus IUJ52_12635 PF02421 Ferrous iron transport protein B IUJ52_12635 PF07670 Nucleoside recognition IUJ52_12650 PF03485 Arginyl tRNA synthetase N terminal domain IUJ52_12650 PF05746 DALR anticodon binding domain IUJ52_12650 PF00750 tRNA synthetases class I (R) IUJ52_12655 PF06185 YecM protein IUJ52_12660 PF16187 Middle or third domain of peptidase_M16 IUJ52_12660 PF00675 Insulinase (Peptidase family M16) IUJ52_12660 PF05193 Peptidase M16 inactive domain IUJ52_12665 PF00300 Histidine phosphatase superfamily (branch 1) IUJ52_12670 PF00771 FHIPEP family IUJ52_12675 PF00448 SRP54-type protein, GTPase domain IUJ52_12680 PF10609 NUBPL iron-transfer P-loop NTPase IUJ52_12685 PF04545 Sigma-70, region 4 IUJ52_12685 PF04539 Sigma-70 region 3 IUJ52_12685 PF04542 Sigma-70 region 2 IUJ52_12690 PF00072 Response regulator receiver domain IUJ52_12695 PF04344 Chemotaxis phosphatase, CheZ IUJ52_12700 PF01584 CheW-like domain IUJ52_12700 PF02895 Signal transducing histidine kinase, homodimeric domain IUJ52_12700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_12700 PF01627 Hpt domain IUJ52_12700 PF00072 Response regulator receiver domain IUJ52_12705 PF01339 CheB methylesterase IUJ52_12705 PF00072 Response regulator receiver domain IUJ52_12710 PF13614 AAA domain IUJ52_12720 PF01584 CheW-like domain IUJ52_12730 PF00005 ABC transporter IUJ52_12735 PF03379 CcmB protein IUJ52_12740 PF01578 Cytochrome C assembly protein IUJ52_12745 PF04995 Heme exporter protein D (CcmD) IUJ52_12750 PF03100 CcmE IUJ52_12755 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IUJ52_12755 PF01578 Cytochrome C assembly protein IUJ52_12760 PF08534 Redoxin IUJ52_12765 PF03918 Cytochrome C biogenesis protein IUJ52_12770 PF03918 Cytochrome C biogenesis protein IUJ52_12775 PF04333 MlaA lipoprotein IUJ52_12790 PF03611 PTS system sugar-specific permease component IUJ52_12800 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IUJ52_12805 PF00356 Bacterial regulatory proteins, lacI family IUJ52_12810 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IUJ52_12810 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IUJ52_12815 PF00462 Glutaredoxin IUJ52_12820 PF01751 Toprim domain IUJ52_12820 PF01131 DNA topoisomerase IUJ52_12825 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IUJ52_12825 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit IUJ52_12830 PF01494 FAD binding domain IUJ52_12835 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ52_12845 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ52_12850 PF00248 Aldo/keto reductase family IUJ52_12855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IUJ52_12865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_12865 PF03466 LysR substrate binding domain IUJ52_12870 PF04909 Amidohydrolase IUJ52_12875 PF03737 Aldolase/RraA IUJ52_12880 PF04303 PrpF protein IUJ52_12885 PF04909 Amidohydrolase IUJ52_12895 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IUJ52_12910 PF01970 Tripartite tricarboxylate transporter TctA family IUJ52_12915 PF01488 Shikimate / quinate 5-dehydrogenase IUJ52_12915 PF08501 Shikimate dehydrogenase substrate binding domain IUJ52_12915 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IUJ52_12920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ52_12920 PF01261 Xylose isomerase-like TIM barrel IUJ52_12930 PF00850 Histone deacetylase domain IUJ52_12940 PF00155 Aminotransferase class I and II IUJ52_12945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_12945 PF00529 HlyD membrane-fusion protein of T1SS IUJ52_12960 PF07690 Major Facilitator Superfamily IUJ52_12965 PF03466 LysR substrate binding domain IUJ52_12965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_12975 PF00884 Sulfatase IUJ52_12975 PF11893 Domain of unknown function (DUF3413) IUJ52_12980 PF07208 Protein of unknown function (DUF1414) IUJ52_12985 PF04245 37-kD nucleoid-associated bacterial protein IUJ52_12995 PF03553 Na+/H+ antiporter family IUJ52_13000 PF01118 Semialdehyde dehydrogenase, NAD binding domain IUJ52_13000 PF02774 Semialdehyde dehydrogenase, dimerisation domain IUJ52_13005 PF00520 Ion transport protein IUJ52_13005 PF00027 Cyclic nucleotide-binding domain IUJ52_13010 PF01914 MarC family integral membrane protein IUJ52_13015 PF00171 Aldehyde dehydrogenase family IUJ52_13015 PF00465 Iron-containing alcohol dehydrogenase IUJ52_13025 PF01740 STAS domain IUJ52_13025 PF00916 Sulfate permease family IUJ52_13035 PF10150 Ribonuclease E/G family IUJ52_13035 PF00575 S1 RNA binding domain IUJ52_13035 PF12111 Polyribonucleotide phosphorylase C terminal IUJ52_13040 PF00849 RNA pseudouridylate synthase IUJ52_13040 PF01479 S4 domain IUJ52_13045 PF02545 Maf-like protein IUJ52_13050 PF02620 Large ribosomal RNA subunit accumulation protein YceD IUJ52_13055 PF01783 Ribosomal L32p protein family IUJ52_13060 PF02504 Fatty acid synthesis protein IUJ52_13065 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IUJ52_13065 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IUJ52_13070 PF00698 Acyl transferase domain IUJ52_13080 PF00550 Phosphopantetheine attachment site IUJ52_13085 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ52_13085 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ52_13090 PF01063 Amino-transferase class IV IUJ52_13095 PF02618 YceG-like family IUJ52_13100 PF02223 Thymidylate kinase IUJ52_13105 PF09115 DNA polymerase III, delta subunit, C terminal IUJ52_13110 PF01026 TatD related DNase IUJ52_13115 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IUJ52_13115 PF00367 phosphotransferase system, EIIB IUJ52_13115 PF02378 Phosphotransferase system, EIIC IUJ52_13125 PF02378 Phosphotransferase system, EIIC IUJ52_13125 PF00367 phosphotransferase system, EIIB IUJ52_13140 PF00209 Sodium:neurotransmitter symporter family IUJ52_13155 PF01734 Patatin-like phospholipase IUJ52_13160 PF02887 Pyruvate kinase, alpha/beta domain IUJ52_13160 PF00224 Pyruvate kinase, barrel domain IUJ52_13165 PF00480 ROK family IUJ52_13170 PF00072 Response regulator receiver domain IUJ52_13170 PF01584 CheW-like domain IUJ52_13175 PF02811 PHP domain IUJ52_13175 PF14579 Helix-hairpin-helix motif IUJ52_13175 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IUJ52_13175 PF07733 Bacterial DNA polymerase III alpha NTPase domain IUJ52_13175 PF01336 OB-fold nucleic acid binding domain IUJ52_13190 PF00106 short chain dehydrogenase IUJ52_13195 PF01343 Peptidase family S49 IUJ52_13195 PF08496 Peptidase family S49 N-terminal IUJ52_13215 PF01966 HD domain IUJ52_13215 PF13286 Phosphohydrolase-associated domain IUJ52_13225 PF00155 Aminotransferase class I and II IUJ52_13230 PF00425 chorismate binding enzyme IUJ52_13235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ52_13235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ52_13235 PF16582 Middle domain of thiamine pyrophosphate IUJ52_13240 PF12697 Alpha/beta hydrolase family IUJ52_13245 PF00378 Enoyl-CoA hydratase/isomerase IUJ52_13250 PF13378 Enolase C-terminal domain-like IUJ52_13255 PF00501 AMP-binding enzyme IUJ52_13255 PF13193 AMP-binding enzyme C-terminal domain IUJ52_13265 PF03601 Conserved hypothetical protein 698 IUJ52_13270 PF07690 Major Facilitator Superfamily IUJ52_13290 PF06445 GyrI-like small molecule binding domain IUJ52_13295 PF01464 Transglycosylase SLT domain IUJ52_13295 PF01476 LysM domain IUJ52_13315 PF00460 Flagella basal body rod protein IUJ52_13320 PF00460 Flagella basal body rod protein IUJ52_13320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_13325 PF13860 FlgD Ig-like domain IUJ52_13325 PF03963 Flagellar hook capping protein - N-terminal region IUJ52_13325 PF13861 FlgD Tudor-like domain IUJ52_13330 PF00460 Flagella basal body rod protein IUJ52_13330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_13330 PF07559 Flagellar basal body protein FlaE IUJ52_13335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_13335 PF00460 Flagella basal body rod protein IUJ52_13340 PF00460 Flagella basal body rod protein IUJ52_13340 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_13345 PF02107 Flagellar L-ring protein IUJ52_13350 PF02119 Flagellar P-ring protein IUJ52_13355 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase IUJ52_13355 PF10135 Rod binding protein IUJ52_13360 PF00460 Flagella basal body rod protein IUJ52_13360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ52_13385 PF04962 KduI/IolB family IUJ52_13390 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ52_13400 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ52_13410 PF01844 HNH endonuclease IUJ52_13430 PF04170 NlpE N-terminal domain IUJ52_13440 PF13677 Membrane MotB of proton-channel complex MotA/MotB IUJ52_13440 PF00691 OmpA family IUJ52_13445 PF01618 MotA/TolQ/ExbB proton channel family IUJ52_13450 PF04542 Sigma-70 region 2 IUJ52_13450 PF04545 Sigma-70, region 4 IUJ52_13455 PF03748 Flagellar basal body-associated protein FliL IUJ52_13470 PF02561 Flagellar protein FliS IUJ52_13475 PF07196 Flagellin hook IN motif IUJ52_13475 PF02465 Flagellar hook-associated protein 2 N-terminus IUJ52_13475 PF07195 Flagellar hook-associated protein 2 C-terminus IUJ52_13480 PF00700 Bacterial flagellin C-terminal helical region IUJ52_13480 PF00669 Bacterial flagellin N-terminal helical region IUJ52_13490 PF00771 FHIPEP family IUJ52_13495 PF01312 FlhB HrpN YscU SpaS Family IUJ52_13500 PF01311 Bacterial export proteins, family 1 IUJ52_13505 PF01313 Bacterial export proteins, family 3 IUJ52_13510 PF00813 FliP family IUJ52_13515 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IUJ52_13525 PF05736 OprF membrane domain IUJ52_13525 PF00691 OmpA family IUJ52_13530 PF02954 Bacterial regulatory protein, Fis family IUJ52_13530 PF00158 Sigma-54 interaction domain IUJ52_13530 PF00072 Response regulator receiver domain IUJ52_13535 PF02049 Flagellar hook-basal body complex protein FliE IUJ52_13540 PF08345 Flagellar M-ring protein C-terminal IUJ52_13540 PF01514 Secretory protein of YscJ/FliF family IUJ52_13555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ52_13555 PF18269 T3SS EscN ATPase C-terminal domain IUJ52_13565 PF00291 Pyridoxal-phosphate dependent enzyme IUJ52_13570 PF13404 AsnC-type helix-turn-helix domain IUJ52_13570 PF01037 Lrp/AsnC ligand binding domain IUJ52_13580 PF09619 Type III secretion system lipoprotein chaperone (YscW) IUJ52_13585 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IUJ52_13595 PF08448 PAS fold IUJ52_13595 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_13595 PF00563 EAL domain IUJ52_13610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_13610 PF03466 LysR substrate binding domain IUJ52_13615 PF03547 Membrane transport protein IUJ52_13620 PF00874 PRD domain IUJ52_13620 PF03123 CAT RNA binding domain IUJ52_13625 PF02378 Phosphotransferase system, EIIC IUJ52_13625 PF00367 phosphotransferase system, EIIB IUJ52_13625 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IUJ52_13630 PF00232 Glycosyl hydrolase family 1 IUJ52_13635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_13635 PF00672 HAMP domain IUJ52_13635 PF12729 Four helix bundle sensory module for signal transduction IUJ52_13640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_13640 PF03466 LysR substrate binding domain IUJ52_13650 PF01161 Phosphatidylethanolamine-binding protein IUJ52_13655 PF12833 Helix-turn-helix domain IUJ52_13675 PF09334 tRNA synthetases class I (M) IUJ52_13675 PF01588 Putative tRNA binding domain IUJ52_13690 PF00873 AcrB/AcrD/AcrF family IUJ52_13695 PF11604 Copper binding periplasmic protein CusF IUJ52_13715 PF00270 DEAD/DEAH box helicase IUJ52_13715 PF00271 Helicase conserved C-terminal domain IUJ52_13720 PF00884 Sulfatase IUJ52_13725 PF01219 Prokaryotic diacylglycerol kinase IUJ52_13730 PF08019 Phosphoethanolamine transferase EptA/EptB IUJ52_13730 PF00884 Sulfatase IUJ52_13735 PF00196 Bacterial regulatory proteins, luxR family IUJ52_13735 PF00072 Response regulator receiver domain IUJ52_13740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_13740 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_13745 PF13247 4Fe-4S dicluster domain IUJ52_13750 PF03916 Polysulphide reductase, NrfD IUJ52_13755 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ52_13755 PF00384 Molybdopterin oxidoreductase IUJ52_13755 PF01568 Molydopterin dinucleotide binding domain IUJ52_13765 PF00563 EAL domain IUJ52_13765 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_13765 PF03707 Bacterial signalling protein N terminal repeat IUJ52_13770 PF00392 Bacterial regulatory proteins, gntR family IUJ52_13770 PF00155 Aminotransferase class I and II IUJ52_13775 PF01654 Cytochrome bd terminal oxidase subunit I IUJ52_13780 PF02322 Cytochrome bd terminal oxidase subunit II IUJ52_13805 PF07690 Major Facilitator Superfamily IUJ52_13810 PF04397 LytTr DNA-binding domain IUJ52_13810 PF00072 Response regulator receiver domain IUJ52_13815 PF07694 5TMR of 5TMR-LYT IUJ52_13815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_13815 PF06580 Histidine kinase IUJ52_13825 PF00999 Sodium/hydrogen exchanger family IUJ52_13825 PF02254 TrkA-N domain IUJ52_13830 PF02525 Flavodoxin-like fold IUJ52_13835 PF07690 Major Facilitator Superfamily IUJ52_13840 PF00857 Isochorismatase family IUJ52_13840 PF00550 Phosphopantetheine attachment site IUJ52_13845 PF00501 AMP-binding enzyme IUJ52_13845 PF13193 AMP-binding enzyme C-terminal domain IUJ52_13850 PF00425 chorismate binding enzyme IUJ52_13860 PF00793 DAHP synthetase I family IUJ52_13865 PF00550 Phosphopantetheine attachment site IUJ52_13865 PF00668 Condensation domain IUJ52_13865 PF00501 AMP-binding enzyme IUJ52_13865 PF08242 Methyltransferase domain IUJ52_13870 PF13193 AMP-binding enzyme C-terminal domain IUJ52_13870 PF00668 Condensation domain IUJ52_13870 PF00550 Phosphopantetheine attachment site IUJ52_13870 PF00501 AMP-binding enzyme IUJ52_13875 PF00296 Luciferase-like monooxygenase IUJ52_13880 PF01497 Periplasmic binding protein IUJ52_13885 PF01032 FecCD transport family IUJ52_13890 PF01032 FecCD transport family IUJ52_13895 PF07715 TonB-dependent Receptor Plug Domain IUJ52_13905 PF00501 AMP-binding enzyme IUJ52_13905 PF13193 AMP-binding enzyme C-terminal domain IUJ52_13905 PF00668 Condensation domain IUJ52_13905 PF00550 Phosphopantetheine attachment site IUJ52_13905 PF00975 Thioesterase domain IUJ52_13910 PF00005 ABC transporter IUJ52_13920 PF00356 Bacterial regulatory proteins, lacI family IUJ52_13925 PF00232 Glycosyl hydrolase family 1 IUJ52_13930 PF17954 Quercetinase C-terminal cupin domain IUJ52_13930 PF02678 Pirin IUJ52_13935 PF02581 Thiamine monophosphate synthase IUJ52_13940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ52_13940 PF00005 ABC transporter IUJ52_13945 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ52_13945 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_13950 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_13955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ52_13960 PF00440 Bacterial regulatory proteins, tetR family IUJ52_13965 PF02321 Outer membrane efflux protein IUJ52_13970 PF00529 HlyD membrane-fusion protein of T1SS IUJ52_13970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_13975 PF07690 Major Facilitator Superfamily IUJ52_13980 PF06445 GyrI-like small molecule binding domain IUJ52_13980 PF12833 Helix-turn-helix domain IUJ52_13985 PF00593 TonB dependent receptor IUJ52_13985 PF07715 TonB-dependent Receptor Plug Domain IUJ52_13990 PF00486 Transcriptional regulatory protein, C terminal IUJ52_13990 PF00072 Response regulator receiver domain IUJ52_13995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_13995 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_14000 PF00367 phosphotransferase system, EIIB IUJ52_14000 PF02378 Phosphotransferase system, EIIC IUJ52_14005 PF00356 Bacterial regulatory proteins, lacI family IUJ52_14010 PF08244 Glycosyl hydrolases family 32 C terminal IUJ52_14010 PF00251 Glycosyl hydrolases family 32 N-terminal domain IUJ52_14015 PF01590 GAF domain IUJ52_14015 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_14015 PF00360 Phytochrome region IUJ52_14015 PF00563 EAL domain IUJ52_14020 PF02264 LamB porin IUJ52_14020 PF11471 Maltoporin periplasmic N-terminal extension IUJ52_14025 PF00294 pfkB family carbohydrate kinase IUJ52_14040 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ52_14040 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ52_14055 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ52_14055 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ52_14080 PF00221 Aromatic amino acid lyase IUJ52_14085 PF00535 Glycosyl transferase family 2 IUJ52_14105 PF00550 Phosphopantetheine attachment site IUJ52_14110 PF00550 Phosphopantetheine attachment site IUJ52_14115 PF00501 AMP-binding enzyme IUJ52_14115 PF13193 AMP-binding enzyme C-terminal domain IUJ52_14115 PF01553 Acyltransferase IUJ52_14135 PF04820 Tryptophan halogenase IUJ52_14140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ52_14145 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_14150 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ52_14150 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_14155 PF00005 ABC transporter IUJ52_14155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ52_14160 PF00005 ABC transporter IUJ52_14160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ52_14170 PF13409 Glutathione S-transferase, N-terminal domain IUJ52_14175 PF13194 Domain of unknown function (DUF4010) IUJ52_14180 PF07085 DRTGG domain IUJ52_14180 PF01515 Phosphate acetyl/butaryl transferase IUJ52_14185 PF00871 Acetokinase family IUJ52_14190 PF04217 Protein of unknown function, DUF412 IUJ52_14200 PF02653 Branched-chain amino acid transport system / permease component IUJ52_14205 PF00005 ABC transporter IUJ52_14210 PF05230 MASE2 domain IUJ52_14210 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_14215 PF01207 Dihydrouridine synthase (Dus) IUJ52_14220 PF07963 Prokaryotic N-terminal methylation motif IUJ52_14225 PF07516 SecA Wing and Scaffold domain IUJ52_14225 PF01043 SecA preprotein cross-linking domain IUJ52_14225 PF02810 SEC-C motif IUJ52_14225 PF07517 SecA DEAD-like domain IUJ52_14230 PF03548 Outer membrane lipoprotein carrier protein LolA IUJ52_14235 PF16193 AAA C-terminal domain IUJ52_14235 PF00004 ATPase family associated with various cellular activities (AAA) IUJ52_14235 PF12002 MgsA AAA+ ATPase C terminal IUJ52_14240 PF02403 Seryl-tRNA synthetase N-terminal domain IUJ52_14240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IUJ52_14250 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ52_14250 PF00384 Molybdopterin oxidoreductase IUJ52_14250 PF01568 Molydopterin dinucleotide binding domain IUJ52_14255 PF10414 Sirohaem synthase dimerisation region IUJ52_14255 PF14824 Sirohaem biosynthesis protein central IUJ52_14255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUJ52_14265 PF03861 ANTAR domain IUJ52_14265 PF00072 Response regulator receiver domain IUJ52_14270 PF00005 ABC transporter IUJ52_14275 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_14280 PF00005 ABC transporter IUJ52_14285 PF18267 Rubredoxin NAD+ reductase C-terminal domain IUJ52_14285 PF13806 Rieske-like [2Fe-2S] domain IUJ52_14285 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_14285 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IUJ52_14285 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IUJ52_14285 PF04324 BFD-like [2Fe-2S] binding domain IUJ52_14295 PF00202 Aminotransferase class-III IUJ52_14300 PF06968 Biotin and Thiamin Synthesis associated domain IUJ52_14300 PF04055 Radical SAM superfamily IUJ52_14305 PF00155 Aminotransferase class I and II IUJ52_14310 PF08241 Methyltransferase domain IUJ52_14325 PF01435 Peptidase family M48 IUJ52_14335 PF00106 short chain dehydrogenase IUJ52_14370 PF00206 Lyase IUJ52_14370 PF08328 Adenylosuccinate lyase C-terminal IUJ52_14375 PF04356 Protein of unknown function (DUF489) IUJ52_14385 PF00294 pfkB family carbohydrate kinase IUJ52_14390 PF00816 H-NS histone family IUJ52_14395 PF03553 Na+/H+ antiporter family IUJ52_14400 PF00072 Response regulator receiver domain IUJ52_14400 PF00158 Sigma-54 interaction domain IUJ52_14400 PF02954 Bacterial regulatory protein, Fis family IUJ52_14405 PF01634 ATP phosphoribosyltransferase IUJ52_14405 PF08029 HisG, C-terminal domain IUJ52_14410 PF00815 Histidinol dehydrogenase IUJ52_14415 PF00155 Aminotransferase class I and II IUJ52_14420 PF08645 Polynucleotide kinase 3 phosphatase IUJ52_14420 PF00475 Imidazoleglycerol-phosphate dehydratase IUJ52_14425 PF00117 Glutamine amidotransferase class-I IUJ52_14430 PF00977 Histidine biosynthesis protein IUJ52_14435 PF00977 Histidine biosynthesis protein IUJ52_14440 PF01502 Phosphoribosyl-AMP cyclohydrolase IUJ52_14440 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase IUJ52_14445 PF00849 RNA pseudouridylate synthase IUJ52_14450 PF03971 Monomeric isocitrate dehydrogenase IUJ52_14455 PF10400 Virulence activator alpha C-term IUJ52_14455 PF03551 Transcriptional regulator PadR-like family IUJ52_14460 PF07690 Major Facilitator Superfamily IUJ52_14465 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ52_14465 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_14470 PF00313 'Cold-shock' DNA-binding domain IUJ52_14475 PF02617 ATP-dependent Clp protease adaptor protein ClpS IUJ52_14480 PF02861 Clp amino terminal domain, pathogenicity island component IUJ52_14480 PF17871 AAA lid domain IUJ52_14480 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ52_14480 PF07724 AAA domain (Cdc48 subfamily) IUJ52_14480 PF00004 ATPase family associated with various cellular activities (AAA) IUJ52_14485 PF01176 Translation initiation factor 1A / IF-1 IUJ52_14490 PF04376 Arginine-tRNA-protein transferase, N terminus IUJ52_14490 PF04377 Arginine-tRNA-protein transferase, C terminus IUJ52_14495 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IUJ52_14505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IUJ52_14510 PF10692 Protein of unknown function (DUF2498) IUJ52_14515 PF08272 Topoisomerase I zinc-ribbon-like IUJ52_14515 PF01131 DNA topoisomerase IUJ52_14515 PF01751 Toprim domain IUJ52_14515 PF01396 Topoisomerase DNA binding C4 zinc finger IUJ52_14520 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_14520 PF00072 Response regulator receiver domain IUJ52_14525 PF00483 Nucleotidyl transferase IUJ52_14530 PF08323 Starch synthase catalytic domain IUJ52_14530 PF00534 Glycosyl transferases group 1 IUJ52_14550 PF04994 TfoX C-terminal domain IUJ52_14550 PF04993 TfoX N-terminal domain IUJ52_14555 PF00356 Bacterial regulatory proteins, lacI family IUJ52_14560 PF02613 Nitrate reductase delta subunit IUJ52_14565 PF00072 Response regulator receiver domain IUJ52_14565 PF00486 Transcriptional regulatory protein, C terminal IUJ52_14570 PF02698 DUF218 domain IUJ52_14580 PF03882 MukF winged-helix domain IUJ52_14580 PF17193 MukF C-terminal domain IUJ52_14580 PF17192 MukF middle domain IUJ52_14585 PF04288 MukE-like family IUJ52_14590 PF04310 MukB N-terminal IUJ52_14590 PF16330 MukB hinge domain IUJ52_14610 PF18030 RimK PreATP-grasp domain IUJ52_14610 PF08443 RimK-like ATP-grasp domain IUJ52_14615 PF08003 Protein of unknown function (DUF1698) IUJ52_14620 PF13649 Methyltransferase domain IUJ52_14625 PF01904 Protein of unknown function DUF72 IUJ52_14630 PF02938 GAD domain IUJ52_14630 PF00152 tRNA synthetases class II (D, K and N) IUJ52_14630 PF01336 OB-fold nucleic acid binding domain IUJ52_14635 PF00265 Thymidine kinase IUJ52_14640 PF02698 DUF218 domain IUJ52_14645 PF01370 NAD dependent epimerase/dehydratase family IUJ52_14650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_14650 PF03466 LysR substrate binding domain IUJ52_14665 PF01226 Formate/nitrite transporter IUJ52_14670 PF03649 Uncharacterised protein family (UPF0014) IUJ52_14675 PF06796 Periplasmic nitrate reductase protein NapE IUJ52_14680 PF03264 NapC/NirT cytochrome c family, N-terminal region IUJ52_14685 PF00384 Molybdopterin oxidoreductase IUJ52_14685 PF18364 Molybdopterin oxidoreductase N-terminal domain IUJ52_14685 PF01568 Molydopterin dinucleotide binding domain IUJ52_14695 PF16874 Glycosyl hydrolase family 36 C-terminal domain IUJ52_14695 PF16875 Glycosyl hydrolase family 36 N-terminal domain IUJ52_14705 PF01368 DHH family IUJ52_14705 PF02833 DHHA2 domain IUJ52_14720 PF00005 ABC transporter IUJ52_14725 PF00005 ABC transporter IUJ52_14725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ52_14730 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_14730 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ52_14735 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_14740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ52_14745 PF00158 Sigma-54 interaction domain IUJ52_14745 PF02954 Bacterial regulatory protein, Fis family IUJ52_14750 PF04012 PspA/IM30 family IUJ52_14755 PF06667 Phage shock protein B IUJ52_14765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_14770 PF13533 Biotin-lipoyl like IUJ52_14775 PF00873 AcrB/AcrD/AcrF family IUJ52_14780 PF03352 Methyladenine glycosylase IUJ52_14785 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ52_14790 PF13091 PLD-like domain IUJ52_14790 PF13396 Phospholipase_D-nuclease N-terminal IUJ52_14795 PF00209 Sodium:neurotransmitter symporter family IUJ52_14800 PF00206 Lyase IUJ52_14800 PF10415 Fumarase C C-terminus IUJ52_14805 PF00849 RNA pseudouridylate synthase IUJ52_14815 PF00701 Dihydrodipicolinate synthetase family IUJ52_14820 PF01066 CDP-alcohol phosphatidyltransferase IUJ52_14825 PF00005 ABC transporter IUJ52_14830 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_14835 PF13416 Bacterial extracellular solute-binding protein IUJ52_14845 PF06945 Protein of unknown function (DUF1289) IUJ52_14860 PF00005 ABC transporter IUJ52_14870 PF03222 Tryptophan/tyrosine permease family IUJ52_14880 PF01717 Cobalamin-independent synthase, Catalytic domain IUJ52_14890 PF00313 'Cold-shock' DNA-binding domain IUJ52_14920 PF12833 Helix-turn-helix domain IUJ52_14920 PF10114 Sensory domain found in PocR IUJ52_14925 PF01386 Ribosomal L25p family IUJ52_14930 PF00672 HAMP domain IUJ52_14930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_14930 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_14935 PF00072 Response regulator receiver domain IUJ52_14935 PF00486 Transcriptional regulatory protein, C terminal IUJ52_14945 PF04851 Type III restriction enzyme, res subunit IUJ52_14945 PF00271 Helicase conserved C-terminal domain IUJ52_14950 PF01479 S4 domain IUJ52_14950 PF00849 RNA pseudouridylate synthase IUJ52_14955 PF07690 Major Facilitator Superfamily IUJ52_14965 PF13460 NAD(P)H-binding IUJ52_14965 PF11066 Protein of unknown function (DUF2867) IUJ52_14970 PF01554 MatE IUJ52_14975 PF00005 ABC transporter IUJ52_14990 PF06965 Na+/H+ antiporter 1 IUJ52_14995 PF00691 OmpA family IUJ52_14995 PF05736 OprF membrane domain IUJ52_15000 PF02321 Outer membrane efflux protein IUJ52_15010 PF00202 Aminotransferase class-III IUJ52_15015 PF16653 Saccharopine dehydrogenase C-terminal domain IUJ52_15015 PF03435 Saccharopine dehydrogenase NADP binding domain IUJ52_15025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_15025 PF02743 Cache domain IUJ52_15025 PF00672 HAMP domain IUJ52_15035 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ52_15045 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ52_15050 PF01202 Shikimate kinase IUJ52_15055 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain IUJ52_15055 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IUJ52_15065 PF00994 Probable molybdopterin binding domain IUJ52_15075 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ52_15075 PF00970 Oxidoreductase FAD-binding domain IUJ52_15075 PF00175 Oxidoreductase NAD-binding domain IUJ52_15080 PF00268 Ribonucleotide reductase, small chain IUJ52_15085 PF00317 Ribonucleotide reductase, all-alpha domain IUJ52_15085 PF03477 ATP cone domain IUJ52_15085 PF02867 Ribonucleotide reductase, barrel domain IUJ52_15095 PF03989 DNA gyrase C-terminal domain, beta-propeller IUJ52_15095 PF00521 DNA gyrase/topoisomerase IV, subunit A IUJ52_15105 PF00925 GTP cyclohydrolase II IUJ52_15130 PF01471 Putative peptidoglycan binding domain IUJ52_15130 PF03734 L,D-transpeptidase catalytic domain IUJ52_15135 PF05951 Bacterial protein of unknown function (DUF882) IUJ52_15140 PF00753 Metallo-beta-lactamase superfamily IUJ52_15155 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ52_15165 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ52_15170 PF17200 Single Cache domain 2 IUJ52_15170 PF07730 Histidine kinase IUJ52_15175 PF00196 Bacterial regulatory proteins, luxR family IUJ52_15175 PF00072 Response regulator receiver domain IUJ52_15180 PF01047 MarR family IUJ52_15185 PF02028 BCCT, betaine/carnitine/choline family transporter IUJ52_15190 PF17200 Single Cache domain 2 IUJ52_15190 PF00672 HAMP domain IUJ52_15190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_15195 PF07733 Bacterial DNA polymerase III alpha NTPase domain IUJ52_15195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IUJ52_15195 PF14579 Helix-hairpin-helix motif IUJ52_15195 PF00929 Exonuclease IUJ52_15195 PF02811 PHP domain IUJ52_15210 PF00155 Aminotransferase class I and II IUJ52_15225 PF00152 tRNA synthetases class II (D, K and N) IUJ52_15225 PF01336 OB-fold nucleic acid binding domain IUJ52_15230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_15230 PF00672 HAMP domain IUJ52_15235 PF01242 6-pyruvoyl tetrahydropterin synthase IUJ52_15240 PF00561 alpha/beta hydrolase fold IUJ52_15250 PF02321 Outer membrane efflux protein IUJ52_15255 PF00005 ABC transporter IUJ52_15255 PF12704 MacB-like periplasmic core domain IUJ52_15255 PF02687 FtsX-like permease family IUJ52_15260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_15265 PF03315 Serine dehydratase beta chain IUJ52_15265 PF03313 Serine dehydratase alpha chain IUJ52_15270 PF03222 Tryptophan/tyrosine permease family IUJ52_15275 PF01695 IstB-like ATP binding protein IUJ52_15310 PF07728 AAA domain (dynein-related subfamily) IUJ52_15310 PF08406 CbbQ/NirQ/NorQ C-terminal IUJ52_15335 PF13737 Transposase DDE domain IUJ52_15340 PF00239 Resolvase, N terminal domain IUJ52_15340 PF02796 Helix-turn-helix domain of resolvase IUJ52_15355 PF02796 Helix-turn-helix domain of resolvase IUJ52_15355 PF00239 Resolvase, N terminal domain IUJ52_15385 PF03466 LysR substrate binding domain IUJ52_15385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_15390 PF03606 C4-dicarboxylate anaerobic carrier IUJ52_15395 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IUJ52_15410 PF02195 ParB-like nuclease domain IUJ52_15410 PF08775 ParB family IUJ52_15415 PF13614 AAA domain IUJ52_15430 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH IUJ52_15435 PF00239 Resolvase, N terminal domain IUJ52_15435 PF02796 Helix-turn-helix domain of resolvase IUJ52_15455 PF13700 Domain of unknown function (DUF4158) IUJ52_15455 PF01526 Tn3 transposase DDE domain IUJ52_15460 PF00239 Resolvase, N terminal domain IUJ52_15460 PF02796 Helix-turn-helix domain of resolvase IUJ52_15475 PF02627 Carboxymuconolactone decarboxylase family IUJ52_15480 PF00085 Thioredoxin IUJ52_15485 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ52_15490 PF01323 DSBA-like thioredoxin domain IUJ52_15505 PF00892 EamA-like transporter family IUJ52_15525 PF00196 Bacterial regulatory proteins, luxR family IUJ52_15525 PF17874 MalT-like TPR region IUJ52_15545 PF00360 Phytochrome region IUJ52_15545 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_15545 PF00563 EAL domain IUJ52_15545 PF01590 GAF domain IUJ52_15565 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IUJ52_15565 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IUJ52_15570 PF13737 Transposase DDE domain IUJ52_15595 PF02028 BCCT, betaine/carnitine/choline family transporter IUJ52_15600 PF05552 Conserved TM helix IUJ52_15600 PF00924 Mechanosensitive ion channel IUJ52_15625 PF00563 EAL domain IUJ52_15625 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_15625 PF03707 Bacterial signalling protein N terminal repeat IUJ52_15630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_15630 PF12729 Four helix bundle sensory module for signal transduction IUJ52_15630 PF00672 HAMP domain IUJ52_15670 PF00455 DeoR C terminal sensor domain IUJ52_15670 PF08220 DeoR-like helix-turn-helix domain IUJ52_15675 PF13426 PAS domain IUJ52_15675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_15675 PF08447 PAS fold IUJ52_15680 PF01266 FAD dependent oxidoreductase IUJ52_15685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_15685 PF03466 LysR substrate binding domain IUJ52_15690 PF13460 NAD(P)H-binding IUJ52_15695 PF00893 Small Multidrug Resistance protein IUJ52_15700 PF12833 Helix-turn-helix domain IUJ52_15700 PF02311 AraC-like ligand binding domain IUJ52_15705 PF00857 Isochorismatase family IUJ52_15710 PF12833 Helix-turn-helix domain IUJ52_15725 PF03992 Antibiotic biosynthesis monooxygenase IUJ52_15730 PF03733 Inner membrane component domain IUJ52_15740 PF00392 Bacterial regulatory proteins, gntR family IUJ52_15740 PF00155 Aminotransferase class I and II IUJ52_15745 PF17156 Gammaproteobacterial periplasmic sensor domain IUJ52_15745 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_15760 PF03466 LysR substrate binding domain IUJ52_15760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_15765 PF00106 short chain dehydrogenase IUJ52_15780 PF13599 Pentapeptide repeats (9 copies) IUJ52_15785 PF03466 LysR substrate binding domain IUJ52_15785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_15790 PF17848 Acetyl-coA carboxylase zinc finger domain IUJ52_15790 PF01039 Carboxyl transferase domain IUJ52_15795 PF00581 Rhodanese-like domain IUJ52_15800 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_15800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ52_15805 PF07690 Major Facilitator Superfamily IUJ52_15815 PF00085 Thioredoxin IUJ52_15820 PF00085 Thioredoxin IUJ52_15825 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_15830 PF00440 Bacterial regulatory proteins, tetR family IUJ52_15835 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ52_15840 PF14579 Helix-hairpin-helix motif IUJ52_15840 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IUJ52_15840 PF07733 Bacterial DNA polymerase III alpha NTPase domain IUJ52_15840 PF02811 PHP domain IUJ52_15840 PF00929 Exonuclease IUJ52_15855 PF00012 Hsp70 protein IUJ52_15860 PF10437 Bacterial lipoate protein ligase C-terminus IUJ52_15860 PF03099 Biotin/lipoate A/B protein ligase family IUJ52_15865 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ52_15865 PF00384 Molybdopterin oxidoreductase IUJ52_15865 PF01568 Molydopterin dinucleotide binding domain IUJ52_15870 PF13247 4Fe-4S dicluster domain IUJ52_15870 PF12800 4Fe-4S binding domain IUJ52_15875 PF04976 DMSO reductase anchor subunit (DmsC) IUJ52_15880 PF02613 Nitrate reductase delta subunit IUJ52_15885 PF12838 4Fe-4S dicluster domain IUJ52_15885 PF00037 4Fe-4S binding domain IUJ52_15895 PF03466 LysR substrate binding domain IUJ52_15895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_15900 PF03806 AbgT putative transporter family IUJ52_15905 PF01546 Peptidase family M20/M25/M40 IUJ52_15905 PF07687 Peptidase dimerisation domain IUJ52_15915 PF00465 Iron-containing alcohol dehydrogenase IUJ52_15920 PF02733 Dak1 domain IUJ52_15925 PF02734 DAK2 domain IUJ52_15930 PF00391 PEP-utilising enzyme, mobile domain IUJ52_15930 PF02896 PEP-utilising enzyme, TIM barrel domain IUJ52_15930 PF05524 PEP-utilising enzyme, N-terminal IUJ52_15935 PF00989 PAS fold IUJ52_15935 PF00158 Sigma-54 interaction domain IUJ52_15935 PF02954 Bacterial regulatory protein, Fis family IUJ52_15940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IUJ52_15945 PF05068 Mannitol repressor IUJ52_15950 PF08125 Mannitol dehydrogenase C-terminal domain IUJ52_15950 PF01232 Mannitol dehydrogenase Rossmann domain IUJ52_15955 PF02378 Phosphotransferase system, EIIC IUJ52_15955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IUJ52_15955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IUJ52_15960 PF01551 Peptidase family M23 IUJ52_15960 PF04225 Opacity-associated protein A LysM-like domain IUJ52_15970 PF02225 PA domain IUJ52_15970 PF04389 Peptidase family M28 IUJ52_15975 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IUJ52_15995 PF03466 LysR substrate binding domain IUJ52_15995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_16000 PF07969 Amidohydrolase family IUJ52_16005 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IUJ52_16010 PF07681 DoxX IUJ52_16015 PF00730 HhH-GPD superfamily base excision DNA repair protein IUJ52_16015 PF06029 AlkA N-terminal domain IUJ52_16020 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IUJ52_16020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IUJ52_16030 PF03600 Citrate transporter IUJ52_16035 PF00375 Sodium:dicarboxylate symporter family IUJ52_16045 PF12833 Helix-turn-helix domain IUJ52_16045 PF07883 Cupin domain IUJ52_16055 PF00561 alpha/beta hydrolase fold IUJ52_16065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_16065 PF00529 HlyD membrane-fusion protein of T1SS IUJ52_16070 PF01047 MarR family IUJ52_16075 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ52_16080 PF00155 Aminotransferase class I and II IUJ52_16085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_16085 PF03466 LysR substrate binding domain IUJ52_16090 PF02001 Protein of unknown function DUF134 IUJ52_16100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_16100 PF03466 LysR substrate binding domain IUJ52_16105 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IUJ52_16120 PF07715 TonB-dependent Receptor Plug Domain IUJ52_16120 PF00593 TonB dependent receptor IUJ52_16125 PF01497 Periplasmic binding protein IUJ52_16130 PF01032 FecCD transport family IUJ52_16135 PF01032 FecCD transport family IUJ52_16140 PF00005 ABC transporter IUJ52_16150 PF03466 LysR substrate binding domain IUJ52_16150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_16165 PF00557 Metallopeptidase family M24 IUJ52_16170 PF13673 Acetyltransferase (GNAT) domain IUJ52_16170 PF13302 Acetyltransferase (GNAT) domain IUJ52_16170 PF03352 Methyladenine glycosylase IUJ52_16170 PF00117 Glutamine amidotransferase class-I IUJ52_16170 PF00958 GMP synthase C terminal domain IUJ52_16180 PF01844 HNH endonuclease IUJ52_16185 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IUJ52_16185 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IUJ52_16205 PF05656 Protein of unknown function (DUF805) IUJ52_16220 PF00291 Pyridoxal-phosphate dependent enzyme IUJ52_16225 PF02627 Carboxymuconolactone decarboxylase family IUJ52_16235 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IUJ52_16235 PF00391 PEP-utilising enzyme, mobile domain IUJ52_16235 PF02896 PEP-utilising enzyme, TIM barrel domain IUJ52_16240 PF03618 Kinase/pyrophosphorylase IUJ52_16250 PF01070 FMN-dependent dehydrogenase IUJ52_16255 PF02652 L-lactate permease IUJ52_16260 PF03466 LysR substrate binding domain IUJ52_16260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_16265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ52_16265 PF00005 ABC transporter IUJ52_16275 PF05362 Lon protease (S16) C-terminal proteolytic domain IUJ52_16275 PF13654 AAA domain IUJ52_16280 PF00672 HAMP domain IUJ52_16280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_16280 PF17200 Single Cache domain 2 IUJ52_16285 PF07690 Major Facilitator Superfamily IUJ52_16290 PF00924 Mechanosensitive ion channel IUJ52_16295 PF02254 TrkA-N domain IUJ52_16295 PF02080 TrkA-C domain IUJ52_16300 PF02386 Cation transport protein IUJ52_16310 PF06865 Pyrimidine/purine nucleoside phosphorylase IUJ52_16320 PF07690 Major Facilitator Superfamily IUJ52_16330 PF04717 Type VI secretion system, phage-baseplate injector IUJ52_16330 PF06715 Gp5 C-terminal repeat (3 copies) IUJ52_16390 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ52_16390 PF17871 AAA lid domain IUJ52_16390 PF07724 AAA domain (Cdc48 subfamily) IUJ52_16390 PF00004 ATPase family associated with various cellular activities (AAA) IUJ52_16410 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IUJ52_16430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_16430 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_16430 PF00672 HAMP domain IUJ52_16435 PF00072 Response regulator receiver domain IUJ52_16435 PF00486 Transcriptional regulatory protein, C terminal IUJ52_16440 PF02678 Pirin IUJ52_16440 PF05726 Pirin C-terminal cupin domain IUJ52_16450 PF03707 Bacterial signalling protein N terminal repeat IUJ52_16450 PF00563 EAL domain IUJ52_16450 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_16455 PF03466 LysR substrate binding domain IUJ52_16455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_16475 PF03707 Bacterial signalling protein N terminal repeat IUJ52_16475 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_16475 PF00563 EAL domain IUJ52_16495 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_16505 PF01047 MarR family IUJ52_16510 PF04237 YjbR IUJ52_16515 PF00072 Response regulator receiver domain IUJ52_16515 PF01584 CheW-like domain IUJ52_16545 PF00535 Glycosyl transferase family 2 IUJ52_16550 PF00925 GTP cyclohydrolase II IUJ52_16555 PF00733 Asparagine synthase IUJ52_16555 PF13537 Glutamine amidotransferase domain IUJ52_16565 PF01042 Endoribonuclease L-PSP IUJ52_16575 PF03466 LysR substrate binding domain IUJ52_16575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_16580 PF12852 Cupin IUJ52_16580 PF12833 Helix-turn-helix domain IUJ52_16585 PF00117 Glutamine amidotransferase class-I IUJ52_16595 PF00682 HMGL-like IUJ52_16595 PF08502 LeuA allosteric (dimerisation) domain IUJ52_16605 PF00440 Bacterial regulatory proteins, tetR family IUJ52_16610 PF00892 EamA-like transporter family IUJ52_16615 PF01037 Lrp/AsnC ligand binding domain IUJ52_16620 PF00196 Bacterial regulatory proteins, luxR family IUJ52_16625 PF01906 Putative heavy-metal-binding IUJ52_16630 PF14583 Oligogalacturonate lyase IUJ52_16635 PF00474 Sodium:solute symporter family IUJ52_16640 PF01554 MatE IUJ52_16645 PF06917 Periplasmic pectate lyase IUJ52_16650 PF01547 Bacterial extracellular solute-binding protein IUJ52_16655 PF00005 ABC transporter IUJ52_16655 PF17912 MalK OB fold domain IUJ52_16655 PF03459 TOBE domain IUJ52_16660 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_16665 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_16675 PF13229 Right handed beta helix region IUJ52_16680 PF12729 Four helix bundle sensory module for signal transduction IUJ52_16680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_16680 PF00672 HAMP domain IUJ52_16685 PF01095 Pectinesterase IUJ52_16690 PF01081 KDPG and KHG aldolase IUJ52_16695 PF00294 pfkB family carbohydrate kinase IUJ52_16700 PF12833 Helix-turn-helix domain IUJ52_16700 PF02311 AraC-like ligand binding domain IUJ52_16705 PF00596 Class II Aldolase and Adducin N-terminal domain IUJ52_16710 PF05336 L-rhamnose mutarotase IUJ52_16715 PF06134 L-rhamnose isomerase (RhaA) IUJ52_16720 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IUJ52_16720 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IUJ52_16725 PF07470 Glycosyl Hydrolase Family 88 IUJ52_16730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ52_16740 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ52_16755 PF07883 Cupin domain IUJ52_16760 PF10688 Bacterial inner membrane protein IUJ52_16770 PF09339 IclR helix-turn-helix domain IUJ52_16770 PF01614 Bacterial transcriptional regulator IUJ52_16775 PF00571 CBS domain IUJ52_16795 PF13302 Acetyltransferase (GNAT) domain IUJ52_16805 PF00392 Bacterial regulatory proteins, gntR family IUJ52_16805 PF00155 Aminotransferase class I and II IUJ52_16815 PF03783 Curli production assembly/transport component CsgG IUJ52_16820 PF10614 Type VIII secretion system (T8SS), CsgF protein IUJ52_16845 PF00005 ABC transporter IUJ52_16845 PF08402 TOBE domain IUJ52_16850 PF01547 Bacterial extracellular solute-binding protein IUJ52_16855 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_16855 PF14785 Maltose transport system permease protein MalF P2 domain IUJ52_16860 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_16875 PF00765 Autoinducer synthase IUJ52_16880 PF03472 Autoinducer binding domain IUJ52_16880 PF00196 Bacterial regulatory proteins, luxR family IUJ52_16885 PF00455 DeoR C terminal sensor domain IUJ52_16885 PF08220 DeoR-like helix-turn-helix domain IUJ52_16905 PF05661 Protein of unknown function (DUF808) IUJ52_16910 PF05958 tRNA (Uracil-5-)-methyltransferase IUJ52_16915 PF01979 Amidohydrolase family IUJ52_16920 PF03473 MOSC domain IUJ52_16920 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ52_16920 PF03476 MOSC N-terminal beta barrel domain IUJ52_16950 PF00005 ABC transporter IUJ52_16955 PF01032 FecCD transport family IUJ52_16965 PF02472 Biopolymer transport protein ExbD/TolR IUJ52_16970 PF01618 MotA/TolQ/ExbB proton channel family IUJ52_16975 PF03544 Gram-negative bacterial TonB protein C-terminal IUJ52_16980 PF04055 Radical SAM superfamily IUJ52_16985 PF06228 Haem utilisation ChuX/HutX IUJ52_16990 PF01243 Pyridoxamine 5'-phosphate oxidase IUJ52_16995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_16995 PF02743 Cache domain IUJ52_16995 PF00672 HAMP domain IUJ52_17000 PF13520 Amino acid permease IUJ52_17005 PF13404 AsnC-type helix-turn-helix domain IUJ52_17005 PF01037 Lrp/AsnC ligand binding domain IUJ52_17025 PF03063 Prismane/CO dehydrogenase family IUJ52_17030 PF00970 Oxidoreductase FAD-binding domain IUJ52_17030 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ52_17030 PF00175 Oxidoreductase NAD-binding domain IUJ52_17035 PF00563 EAL domain IUJ52_17035 PF12792 CSS motif domain associated with EAL IUJ52_17045 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IUJ52_17045 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IUJ52_17060 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IUJ52_17060 PF00072 Response regulator receiver domain IUJ52_17060 PF01627 Hpt domain IUJ52_17060 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_17060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_17060 PF00672 HAMP domain IUJ52_17065 PF00563 EAL domain IUJ52_17065 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_17065 PF03707 Bacterial signalling protein N terminal repeat IUJ52_17070 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IUJ52_17080 PF02566 OsmC-like protein IUJ52_17115 PF02566 OsmC-like protein IUJ52_17125 PF14602 Hexapeptide repeat of succinyl-transferase IUJ52_17125 PF12464 Maltose acetyltransferase IUJ52_17130 PF00892 EamA-like transporter family IUJ52_17140 PF02753 Pili assembly chaperone PapD, C-terminal domain IUJ52_17140 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IUJ52_17145 PF13954 PapC N-terminal domain IUJ52_17145 PF00577 Outer membrane usher protein IUJ52_17145 PF13953 PapC C-terminal domain IUJ52_17155 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IUJ52_17155 PF02753 Pili assembly chaperone PapD, C-terminal domain IUJ52_17160 PF01266 FAD dependent oxidoreductase IUJ52_17165 PF08943 CsiD IUJ52_17175 PF03466 LysR substrate binding domain IUJ52_17175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_17180 PF01758 Sodium Bile acid symporter family IUJ52_17185 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain IUJ52_17185 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IUJ52_17190 PF02874 ATP synthase alpha/beta family, beta-barrel domain IUJ52_17190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ52_17195 PF00231 ATP synthase IUJ52_17200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ52_17200 PF02874 ATP synthase alpha/beta family, beta-barrel domain IUJ52_17200 PF00306 ATP synthase alpha/beta chain, C terminal domain IUJ52_17205 PF00213 ATP synthase delta (OSCP) subunit IUJ52_17210 PF00430 ATP synthase B/B' CF(0) IUJ52_17215 PF00137 ATP synthase subunit C IUJ52_17220 PF00119 ATP synthase A chain IUJ52_17230 PF00194 Eukaryotic-type carbonic anhydrase IUJ52_17240 PF03060 Nitronate monooxygenase IUJ52_17250 PF00270 DEAD/DEAH box helicase IUJ52_17250 PF00271 Helicase conserved C-terminal domain IUJ52_17255 PF00072 Response regulator receiver domain IUJ52_17255 PF02954 Bacterial regulatory protein, Fis family IUJ52_17255 PF00158 Sigma-54 interaction domain IUJ52_17260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_17260 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_17265 PF00672 HAMP domain IUJ52_17265 PF16591 Helical bimodular sensor domain IUJ52_17265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_17275 PF08267 Cobalamin-independent synthase, N-terminal domain IUJ52_17275 PF01717 Cobalamin-independent synthase, Catalytic domain IUJ52_17285 PF06826 Predicted Permease Membrane Region IUJ52_17285 PF02080 TrkA-C domain IUJ52_17290 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ52_17295 PF08546 Ketopantoate reductase PanE/ApbA C terminal IUJ52_17295 PF02558 Ketopantoate reductase PanE/ApbA IUJ52_17340 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) IUJ52_17345 PF02253 Phospholipase A1 IUJ52_17355 PF02028 BCCT, betaine/carnitine/choline family transporter IUJ52_17360 PF02347 Glycine cleavage system P-protein IUJ52_17365 PF01597 Glycine cleavage H-protein IUJ52_17370 PF00464 Serine hydroxymethyltransferase IUJ52_17380 PF01571 Aminomethyltransferase folate-binding domain IUJ52_17380 PF08669 Glycine cleavage T-protein C-terminal barrel domain IUJ52_17390 PF00072 Response regulator receiver domain IUJ52_17390 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_17395 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_17395 PF03707 Bacterial signalling protein N terminal repeat IUJ52_17395 PF00563 EAL domain IUJ52_17400 PF00294 pfkB family carbohydrate kinase IUJ52_17415 PF13419 Haloacid dehalogenase-like hydrolase IUJ52_17440 PF00226 DnaJ domain IUJ52_17440 PF01556 DnaJ C terminal domain IUJ52_17440 PF00684 DnaJ central domain IUJ52_17450 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_17450 PF00498 FHA domain IUJ52_17450 PF00563 EAL domain IUJ52_17455 PF12241 Trans-2-enoyl-CoA reductase catalytic region IUJ52_17455 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IUJ52_17455 PF07055 Enoyl reductase FAD binding domain IUJ52_17460 PF13472 GDSL-like Lipase/Acylhydrolase family IUJ52_17465 PF00005 ABC transporter IUJ52_17480 PF02626 Carboxyltransferase domain, subdomain A and B IUJ52_17490 PF03746 LamB/YcsF family IUJ52_17495 PF08448 PAS fold IUJ52_17495 PF13426 PAS domain IUJ52_17495 PF00563 EAL domain IUJ52_17495 PF05231 MASE1 IUJ52_17495 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_17495 PF08447 PAS fold IUJ52_17500 PF16363 GDP-mannose 4,6 dehydratase IUJ52_17505 PF12729 Four helix bundle sensory module for signal transduction IUJ52_17505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_17505 PF00672 HAMP domain IUJ52_17510 PF03222 Tryptophan/tyrosine permease family IUJ52_17515 PF04336 Acyl carrier protein phosphodiesterase IUJ52_17520 PF00270 DEAD/DEAH box helicase IUJ52_17520 PF00271 Helicase conserved C-terminal domain IUJ52_17525 PF08361 MAATS-type transcriptional repressor, C-terminal region IUJ52_17525 PF00440 Bacterial regulatory proteins, tetR family IUJ52_17530 PF00034 Cytochrome c IUJ52_17535 PF01212 Beta-eliminating lyase IUJ52_17540 PF00293 NUDIX domain IUJ52_17545 PF17868 AAA lid domain IUJ52_17545 PF07728 AAA domain (dynein-related subfamily) IUJ52_17545 PF12592 Protein of unknown function (DUF3763) IUJ52_17550 PF05762 VWA domain containing CoxE-like protein IUJ52_17565 PF07715 TonB-dependent Receptor Plug Domain IUJ52_17565 PF00593 TonB dependent receptor IUJ52_17565 PF07660 Secretin and TonB N terminus short domain IUJ52_17580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_17580 PF00672 HAMP domain IUJ52_17595 PF03466 LysR substrate binding domain IUJ52_17595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_17600 PF00892 EamA-like transporter family IUJ52_17610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_17610 PF03466 LysR substrate binding domain IUJ52_17615 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ52_17625 PF12706 Beta-lactamase superfamily domain IUJ52_17630 PF01965 DJ-1/PfpI family IUJ52_17640 PF00300 Histidine phosphatase superfamily (branch 1) IUJ52_17645 PF01966 HD domain IUJ52_17650 PF00465 Iron-containing alcohol dehydrogenase IUJ52_17655 PF12833 Helix-turn-helix domain IUJ52_17660 PF01979 Amidohydrolase family IUJ52_17670 PF13192 Thioredoxin domain IUJ52_17670 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_17675 PF10417 C-terminal domain of 1-Cys peroxiredoxin IUJ52_17675 PF00578 AhpC/TSA family IUJ52_17685 PF00682 HMGL-like IUJ52_17690 PF00378 Enoyl-CoA hydratase/isomerase IUJ52_17695 PF01039 Carboxyl transferase domain IUJ52_17700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ52_17700 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ52_17700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ52_17705 PF09278 MerR, DNA binding IUJ52_17705 PF00376 MerR family regulatory protein IUJ52_17710 PF02803 Thiolase, C-terminal domain IUJ52_17710 PF00108 Thiolase, N-terminal domain IUJ52_17715 PF00171 Aldehyde dehydrogenase family IUJ52_17720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ52_17720 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ52_17720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ52_17725 PF00378 Enoyl-CoA hydratase/isomerase IUJ52_17730 PF00378 Enoyl-CoA hydratase/isomerase IUJ52_17735 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IUJ52_17735 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IUJ52_17745 PF01144 Coenzyme A transferase IUJ52_17755 PF03825 Nucleoside H+ symporter IUJ52_17760 PF03747 ADP-ribosylglycohydrolase IUJ52_17765 PF00294 pfkB family carbohydrate kinase IUJ52_17775 PF00392 Bacterial regulatory proteins, gntR family IUJ52_17775 PF07702 UTRA domain IUJ52_17785 PF02810 SEC-C motif IUJ52_17785 PF07516 SecA Wing and Scaffold domain IUJ52_17785 PF01043 SecA preprotein cross-linking domain IUJ52_17785 PF07517 SecA DEAD-like domain IUJ52_17790 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ52_17800 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ52_17805 PF07730 Histidine kinase IUJ52_17805 PF17200 Single Cache domain 2 IUJ52_17810 PF00072 Response regulator receiver domain IUJ52_17810 PF00196 Bacterial regulatory proteins, luxR family IUJ52_17815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_17815 PF03466 LysR substrate binding domain IUJ52_17820 PF04715 Anthranilate synthase component I, N terminal region IUJ52_17820 PF00425 chorismate binding enzyme IUJ52_17820 PF00117 Glutamine amidotransferase class-I IUJ52_17825 PF00465 Iron-containing alcohol dehydrogenase IUJ52_17830 PF03180 NLPA lipoprotein IUJ52_17840 PF12833 Helix-turn-helix domain IUJ52_17840 PF02311 AraC-like ligand binding domain IUJ52_17850 PF12849 PBP superfamily domain IUJ52_17860 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_17865 PF00005 ABC transporter IUJ52_17870 PF02798 Glutathione S-transferase, N-terminal domain IUJ52_17880 PF01012 Electron transfer flavoprotein domain IUJ52_17885 PF00766 Electron transfer flavoprotein FAD-binding domain IUJ52_17885 PF01012 Electron transfer flavoprotein domain IUJ52_17890 PF00364 Biotin-requiring enzyme IUJ52_17890 PF02817 e3 binding domain IUJ52_17890 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IUJ52_17895 PF02779 Transketolase, pyrimidine binding domain IUJ52_17895 PF02780 Transketolase, C-terminal domain IUJ52_17900 PF00676 Dehydrogenase E1 component IUJ52_17905 PF03707 Bacterial signalling protein N terminal repeat IUJ52_17905 PF00563 EAL domain IUJ52_17905 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_17920 PF00392 Bacterial regulatory proteins, gntR family IUJ52_17920 PF07729 FCD domain IUJ52_17925 PF08666 SAF domain IUJ52_17925 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus IUJ52_17930 PF01232 Mannitol dehydrogenase Rossmann domain IUJ52_17930 PF08125 Mannitol dehydrogenase C-terminal domain IUJ52_17935 PF02614 Glucuronate isomerase IUJ52_17940 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IUJ52_17945 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ52_17950 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ52_17955 PF01497 Periplasmic binding protein IUJ52_17960 PF01032 FecCD transport family IUJ52_17965 PF00005 ABC transporter IUJ52_17970 PF07690 Major Facilitator Superfamily IUJ52_17975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_17975 PF03466 LysR substrate binding domain IUJ52_17980 PF01546 Peptidase family M20/M25/M40 IUJ52_17980 PF07687 Peptidase dimerisation domain IUJ52_17995 PF01810 LysE type translocator IUJ52_18000 PF02230 Phospholipase/Carboxylesterase IUJ52_18005 PF13409 Glutathione S-transferase, N-terminal domain IUJ52_18010 PF03466 LysR substrate binding domain IUJ52_18010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_18015 PF00474 Sodium:solute symporter family IUJ52_18025 PF02423 Ornithine cyclodeaminase/mu-crystallin family IUJ52_18030 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ52_18040 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ52_18045 PF03807 NADP oxidoreductase coenzyme F420-dependent IUJ52_18045 PF14748 Pyrroline-5-carboxylate reductase dimerisation IUJ52_18050 PF12833 Helix-turn-helix domain IUJ52_18065 PF01975 Survival protein SurE IUJ52_18075 PF00842 Alanine racemase, C-terminal domain IUJ52_18075 PF01168 Alanine racemase, N-terminal domain IUJ52_18080 PF12833 Helix-turn-helix domain IUJ52_18090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_18090 PF00672 HAMP domain IUJ52_18090 PF12729 Four helix bundle sensory module for signal transduction IUJ52_18095 PF06719 AraC-type transcriptional regulator N-terminus IUJ52_18095 PF12833 Helix-turn-helix domain IUJ52_18115 PF00155 Aminotransferase class I and II IUJ52_18125 PF00005 ABC transporter IUJ52_18125 PF16326 ABC transporter C-terminal domain IUJ52_18125 PF12848 ABC transporter IUJ52_18130 PF00589 Phage integrase family IUJ52_18130 PF13495 Phage integrase, N-terminal SAM-like domain IUJ52_18195 PF00583 Acetyltransferase (GNAT) family IUJ52_18205 PF04229 GrpB protein IUJ52_18335 PF00069 Protein kinase domain IUJ52_18460 PF00491 Arginase family IUJ52_18475 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_18480 PF00392 Bacterial regulatory proteins, gntR family IUJ52_18480 PF00155 Aminotransferase class I and II IUJ52_18485 PF02525 Flavodoxin-like fold IUJ52_18490 PF00578 AhpC/TSA family IUJ52_18495 PF11412 Disulphide bond corrector protein DsbC IUJ52_18495 PF02683 Cytochrome C biogenesis protein transmembrane region IUJ52_18505 PF00156 Phosphoribosyl transferase domain IUJ52_18510 PF12464 Maltose acetyltransferase IUJ52_18510 PF14602 Hexapeptide repeat of succinyl-transferase IUJ52_18525 PF02470 MlaD protein IUJ52_18530 PF04403 Paraquat-inducible protein A IUJ52_18535 PF00501 AMP-binding enzyme IUJ52_18535 PF13193 AMP-binding enzyme C-terminal domain IUJ52_18540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_18540 PF03466 LysR substrate binding domain IUJ52_18545 PF00171 Aldehyde dehydrogenase family IUJ52_18550 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ52_18560 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ52_18570 PF00202 Aminotransferase class-III IUJ52_18580 PF00709 Adenylosuccinate synthetase IUJ52_18585 PF03466 LysR substrate binding domain IUJ52_18585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_18590 PF01575 MaoC like domain IUJ52_18595 PF12849 PBP superfamily domain IUJ52_18605 PF00773 RNB domain IUJ52_18605 PF00575 S1 RNA binding domain IUJ52_18605 PF08206 Ribonuclease B OB domain IUJ52_18610 PF00270 DEAD/DEAH box helicase IUJ52_18610 PF00271 Helicase conserved C-terminal domain IUJ52_18610 PF03880 DbpA RNA binding domain IUJ52_18615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IUJ52_18615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IUJ52_18615 PF02824 TGS domain IUJ52_18615 PF03129 Anticodon binding domain IUJ52_18620 PF00707 Translation initiation factor IF-3, C-terminal domain IUJ52_18620 PF05198 Translation initiation factor IF-3, N-terminal domain IUJ52_18625 PF01632 Ribosomal protein L35 IUJ52_18630 PF00453 Ribosomal protein L20 IUJ52_18635 PF03239 Iron permease FTR1 family IUJ52_18640 PF13473 Cupredoxin-like domain IUJ52_18645 PF09905 DNA-binding protein VF530 IUJ52_18690 PF13411 MerR HTH family regulatory protein IUJ52_18695 PF02627 Carboxymuconolactone decarboxylase family IUJ52_18705 PF00892 EamA-like transporter family IUJ52_18715 PF00462 Glutaredoxin IUJ52_18715 PF08534 Redoxin IUJ52_18725 PF13649 Methyltransferase domain IUJ52_18750 PF00583 Acetyltransferase (GNAT) family IUJ52_18755 PF01928 CYTH domain IUJ52_18770 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ52_18795 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IUJ52_18795 PF01411 tRNA synthetases class II (A) IUJ52_18795 PF02272 DHHA1 domain IUJ52_18800 PF06942 GlpM protein IUJ52_18805 PF00293 NUDIX domain IUJ52_18810 PF01810 LysE type translocator IUJ52_18820 PF00583 Acetyltransferase (GNAT) family IUJ52_18830 PF00857 Isochorismatase family IUJ52_18845 PF01810 LysE type translocator IUJ52_18855 PF01596 O-methyltransferase IUJ52_18860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ52_18860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ52_18865 PF00440 Bacterial regulatory proteins, tetR family IUJ52_18875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_18875 PF03466 LysR substrate binding domain IUJ52_18885 PF02779 Transketolase, pyrimidine binding domain IUJ52_18885 PF02780 Transketolase, C-terminal domain IUJ52_18885 PF00456 Transketolase, thiamine diphosphate binding domain IUJ52_18890 PF00923 Transaldolase/Fructose-6-phosphate aldolase IUJ52_18900 PF00581 Rhodanese-like domain IUJ52_18905 PF00899 ThiF family IUJ52_18910 PF03453 MoeA N-terminal region (domain I and II) IUJ52_18910 PF03454 MoeA C-terminal region (domain IV) IUJ52_18910 PF00994 Probable molybdopterin binding domain IUJ52_18915 PF01227 GTP cyclohydrolase I IUJ52_18920 PF13520 Amino acid permease IUJ52_18925 PF05985 Ethanolamine ammonia-lyase light chain (EutC) IUJ52_18930 PF06751 Ethanolamine ammonia lyase large subunit (EutB) IUJ52_18935 PF12833 Helix-turn-helix domain IUJ52_18940 PF01641 SelR domain IUJ52_18940 PF01625 Peptide methionine sulfoxide reductase IUJ52_18945 PF01268 Formate--tetrahydrofolate ligase IUJ52_18960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_18960 PF03466 LysR substrate binding domain IUJ52_18965 PF13419 Haloacid dehalogenase-like hydrolase IUJ52_18970 PF01272 Transcription elongation factor, GreA/GreB, C-term IUJ52_18970 PF14760 Rnk N-terminus IUJ52_18980 PF13419 Haloacid dehalogenase-like hydrolase IUJ52_18985 PF00202 Aminotransferase class-III IUJ52_18990 PF00266 Aminotransferase class-V IUJ52_19000 PF00005 ABC transporter IUJ52_19005 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_19010 PF00392 Bacterial regulatory proteins, gntR family IUJ52_19010 PF07702 UTRA domain IUJ52_19020 PF18027 Cytosolic carboxypeptidase N-terminal domain IUJ52_19020 PF00246 Zinc carboxypeptidase IUJ52_19045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ52_19050 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_19055 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_19055 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ52_19060 PF00005 ABC transporter IUJ52_19060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ52_19065 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ52_19065 PF12804 MobA-like NTP transferase domain IUJ52_19065 PF03479 Plants and Prokaryotes Conserved (PCC) domain IUJ52_19080 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_19080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_19080 PF09456 RcsC Alpha-Beta-Loop (ABL) IUJ52_19080 PF00072 Response regulator receiver domain IUJ52_19085 PF00360 Phytochrome region IUJ52_19085 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_19085 PF00563 EAL domain IUJ52_19085 PF01590 GAF domain IUJ52_19090 PF00196 Bacterial regulatory proteins, luxR family IUJ52_19090 PF00072 Response regulator receiver domain IUJ52_19095 PF17155 Gammaproteobacterial periplasmic sensor domain IUJ52_19095 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_19115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_19115 PF02743 Cache domain IUJ52_19115 PF00672 HAMP domain IUJ52_19120 PF05525 Branched-chain amino acid transport protein IUJ52_19135 PF18081 Fanconi anemia-associated nuclease SAP domain IUJ52_19135 PF08774 VRR-NUC domain IUJ52_19150 PF02129 X-Pro dipeptidyl-peptidase (S15 family) IUJ52_19155 PF00486 Transcriptional regulatory protein, C terminal IUJ52_19190 PF00155 Aminotransferase class I and II IUJ52_19195 PF01497 Periplasmic binding protein IUJ52_19195 PF12833 Helix-turn-helix domain IUJ52_19200 PF01625 Peptide methionine sulfoxide reductase IUJ52_19200 PF01641 SelR domain IUJ52_19205 PF00860 Permease family IUJ52_19215 PF01177 Asp/Glu/Hydantoin racemase IUJ52_19230 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_19235 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_19240 PF00005 ABC transporter IUJ52_19250 PF13593 SBF-like CPA transporter family (DUF4137) IUJ52_19255 PF01425 Amidase IUJ52_19265 PF00266 Aminotransferase class-V IUJ52_19270 PF01546 Peptidase family M20/M25/M40 IUJ52_19270 PF07687 Peptidase dimerisation domain IUJ52_19290 PF01979 Amidohydrolase family IUJ52_19295 PF00576 HIUase/Transthyretin family IUJ52_19300 PF01014 Uricase IUJ52_19300 PF09349 OHCU decarboxylase IUJ52_19315 PF01799 [2Fe-2S] binding domain IUJ52_19315 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ52_19320 PF02608 ABC transporter substrate-binding protein PnrA-like IUJ52_19325 PF02653 Branched-chain amino acid transport system / permease component IUJ52_19330 PF02653 Branched-chain amino acid transport system / permease component IUJ52_19335 PF00005 ABC transporter IUJ52_19340 PF00440 Bacterial regulatory proteins, tetR family IUJ52_19340 PF08362 YcdC-like protein, C-terminal region IUJ52_19350 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_19360 PF17156 Gammaproteobacterial periplasmic sensor domain IUJ52_19360 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_19375 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IUJ52_19375 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IUJ52_19375 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IUJ52_19380 PF02233 NAD(P) transhydrogenase beta subunit IUJ52_19390 PF00486 Transcriptional regulatory protein, C terminal IUJ52_19390 PF00072 Response regulator receiver domain IUJ52_19405 PF03701 Uncharacterised protein family (UPF0181) IUJ52_19420 PF01253 Translation initiation factor SUI1 IUJ52_19435 PF07478 D-ala D-ala ligase C-terminus IUJ52_19435 PF01820 D-ala D-ala ligase N-terminus IUJ52_19445 PF13380 CoA binding domain IUJ52_19445 PF13607 Succinyl-CoA ligase like flavodoxin domain IUJ52_19445 PF00583 Acetyltransferase (GNAT) family IUJ52_19450 PF03466 LysR substrate binding domain IUJ52_19450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_19455 PF00593 TonB dependent receptor IUJ52_19455 PF07715 TonB-dependent Receptor Plug Domain IUJ52_19465 PF12793 Sugar transport-related sRNA regulator N-term IUJ52_19465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ52_19475 PF03061 Thioesterase superfamily IUJ52_19480 PF01435 Peptidase family M48 IUJ52_19485 PF08274 PhnA Zinc-Ribbon IUJ52_19485 PF03831 PhnA domain IUJ52_19495 PF03741 Integral membrane protein TerC family IUJ52_19500 PF00149 Calcineurin-like phosphoesterase IUJ52_19500 PF02872 5'-nucleotidase, C-terminal domain IUJ52_19505 PF11398 Protein of unknown function (DUF2813) IUJ52_19510 PF06496 Protein of unknown function (DUF1097) IUJ52_19515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_19515 PF03466 LysR substrate binding domain IUJ52_19520 PF01226 Formate/nitrite transporter IUJ52_19525 PF04264 YceI-like domain IUJ52_19530 PF01292 Prokaryotic cytochrome b561 IUJ52_19555 PF00563 EAL domain IUJ52_19555 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_19555 PF13426 PAS domain IUJ52_19565 PF00384 Molybdopterin oxidoreductase IUJ52_19570 PF02634 FdhD/NarQ family IUJ52_19575 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IUJ52_19575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_19575 PF00672 HAMP domain IUJ52_19575 PF01627 Hpt domain IUJ52_19575 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_19575 PF00072 Response regulator receiver domain IUJ52_19580 PF00072 Response regulator receiver domain IUJ52_19590 PF12833 Helix-turn-helix domain IUJ52_19590 PF02311 AraC-like ligand binding domain IUJ52_19595 PF08240 Alcohol dehydrogenase GroES-like domain IUJ52_19595 PF00107 Zinc-binding dehydrogenase IUJ52_19605 PF01047 MarR family IUJ52_19610 PF01926 50S ribosome-binding GTPase IUJ52_19615 PF02492 CobW/HypB/UreG, nucleotide-binding domain IUJ52_19615 PF07683 Cobalamin synthesis protein cobW C-terminal domain IUJ52_19620 PF00654 Voltage gated chloride channel IUJ52_19630 PF00155 Aminotransferase class I and II IUJ52_19635 PF00072 Response regulator receiver domain IUJ52_19635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_19640 PF13476 AAA domain IUJ52_19645 PF00149 Calcineurin-like phosphoesterase IUJ52_19645 PF12320 Type 5 capsule protein repressor C-terminal domain IUJ52_19650 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IUJ52_19650 PF00356 Bacterial regulatory proteins, lacI family IUJ52_19655 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IUJ52_19655 PF00381 PTS HPr component phosphorylation site IUJ52_19660 PF00294 pfkB family carbohydrate kinase IUJ52_19665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IUJ52_19665 PF02378 Phosphotransferase system, EIIC IUJ52_19670 PF08443 RimK-like ATP-grasp domain IUJ52_19670 PF18030 RimK PreATP-grasp domain IUJ52_19675 PF00155 Aminotransferase class I and II IUJ52_19685 PF13597 Anaerobic ribonucleoside-triphosphate reductase IUJ52_19685 PF03477 ATP cone domain IUJ52_19695 PF00873 AcrB/AcrD/AcrF family IUJ52_19700 PF00529 HlyD membrane-fusion protein of T1SS IUJ52_19700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_19710 PF04143 Sulphur transport IUJ52_19725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ52_19725 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_19730 PF13673 Acetyltransferase (GNAT) domain IUJ52_19740 PF06719 AraC-type transcriptional regulator N-terminus IUJ52_19740 PF12833 Helix-turn-helix domain IUJ52_19750 PF12146 Serine aminopeptidase, S33 IUJ52_19755 PF12146 Serine aminopeptidase, S33 IUJ52_19760 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ52_19780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_19780 PF03466 LysR substrate binding domain IUJ52_19800 PF00529 HlyD membrane-fusion protein of T1SS IUJ52_19800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_19805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_19805 PF03466 LysR substrate binding domain IUJ52_19810 PF01810 LysE type translocator IUJ52_19815 PF00072 Response regulator receiver domain IUJ52_19815 PF00486 Transcriptional regulatory protein, C terminal IUJ52_19825 PF01266 FAD dependent oxidoreductase IUJ52_19825 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IUJ52_19830 PF08447 PAS fold IUJ52_19830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_19835 PF00691 OmpA family IUJ52_19835 PF05736 OprF membrane domain IUJ52_19845 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUJ52_19845 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IUJ52_19850 PF13419 Haloacid dehalogenase-like hydrolase IUJ52_19855 PF12729 Four helix bundle sensory module for signal transduction IUJ52_19855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_19855 PF00672 HAMP domain IUJ52_19860 PF07690 Major Facilitator Superfamily IUJ52_19875 PF03606 C4-dicarboxylate anaerobic carrier IUJ52_19880 PF00196 Bacterial regulatory proteins, luxR family IUJ52_19880 PF00072 Response regulator receiver domain IUJ52_19885 PF07730 Histidine kinase IUJ52_19885 PF00672 HAMP domain IUJ52_19885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_19885 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IUJ52_19900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ52_19900 PF01568 Molydopterin dinucleotide binding domain IUJ52_19900 PF00384 Molybdopterin oxidoreductase IUJ52_19905 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) IUJ52_19910 PF03264 NapC/NirT cytochrome c family, N-terminal region IUJ52_19920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ52_19930 PF00561 alpha/beta hydrolase fold IUJ52_19930 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus IUJ52_19940 PF00108 Thiolase, N-terminal domain IUJ52_19940 PF02803 Thiolase, C-terminal domain IUJ52_19945 PF00106 short chain dehydrogenase IUJ52_19950 PF02355 Protein export membrane protein IUJ52_19950 PF07549 SecD/SecF GG Motif IUJ52_19955 PF02355 Protein export membrane protein IUJ52_19955 PF07549 SecD/SecF GG Motif IUJ52_19955 PF13721 SecD export protein N-terminal TM region IUJ52_19975 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_19980 PF00483 Nucleotidyl transferase IUJ52_19985 PF06483 Chitinase C IUJ52_19985 PF00704 Glycosyl hydrolases family 18 IUJ52_19990 PF06719 AraC-type transcriptional regulator N-terminus IUJ52_19990 PF12833 Helix-turn-helix domain IUJ52_19995 PF00465 Iron-containing alcohol dehydrogenase IUJ52_20005 PF00072 Response regulator receiver domain IUJ52_20005 PF01627 Hpt domain IUJ52_20005 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_20005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_20005 PF00672 HAMP domain IUJ52_20010 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IUJ52_20015 PF02142 MGS-like domain IUJ52_20020 PF00857 Isochorismatase family IUJ52_20025 PF12462 DNA helicase IV / RNA helicase N terminal IUJ52_20025 PF00580 UvrD/REP helicase N-terminal domain IUJ52_20025 PF13361 UvrD-like helicase C-terminal domain IUJ52_20045 PF00529 HlyD membrane-fusion protein of T1SS IUJ52_20060 PF00005 ABC transporter IUJ52_20060 PF00664 ABC transporter transmembrane region IUJ52_20060 PF03412 Peptidase C39 family IUJ52_20065 PF12805 FUSC-like inner membrane protein yccS IUJ52_20085 PF00005 ABC transporter IUJ52_20085 PF03459 TOBE domain IUJ52_20090 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_20100 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IUJ52_20100 PF07685 CobB/CobQ-like glutamine amidotransferase domain IUJ52_20120 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_20120 PF09308 LuxQ, periplasmic IUJ52_20120 PF00072 Response regulator receiver domain IUJ52_20120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_20125 PF13407 Periplasmic binding protein domain IUJ52_20130 PF01541 GIY-YIG catalytic domain IUJ52_20135 PF04337 Protein of unknown function, DUF480 IUJ52_20145 PF04363 Protein of unknown function (DUF496) IUJ52_20150 PF02899 Phage integrase, N-terminal SAM-like domain IUJ52_20150 PF00589 Phage integrase family IUJ52_20205 PF06892 Phage regulatory protein CII (CP76) IUJ52_20225 PF05840 Bacteriophage replication gene A protein (GPA) IUJ52_20365 PF04984 Phage tail sheath protein subtilisin-like domain IUJ52_20365 PF17482 Phage tail sheath C-terminal domain IUJ52_20430 PF10688 Bacterial inner membrane protein IUJ52_20435 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IUJ52_20435 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IUJ52_20440 PF00230 Major intrinsic protein IUJ52_20445 PF01266 FAD dependent oxidoreductase IUJ52_20445 PF04324 BFD-like [2Fe-2S] binding domain IUJ52_20450 PF00890 FAD binding domain IUJ52_20455 PF13183 4Fe-4S dicluster domain IUJ52_20455 PF02754 Cysteine-rich domain IUJ52_20470 PF00534 Glycosyl transferases group 1 IUJ52_20470 PF13439 Glycosyltransferase Family 4 IUJ52_20475 PF13439 Glycosyltransferase Family 4 IUJ52_20475 PF00534 Glycosyl transferases group 1 IUJ52_20500 PF02563 Polysaccharide biosynthesis/export protein IUJ52_20500 PF10531 SLBB domain IUJ52_20500 PF18412 Outer-membrane lipoprotein Wza C-terminal domain IUJ52_20510 PF02397 Bacterial sugar transferase IUJ52_20515 PF00873 AcrB/AcrD/AcrF family IUJ52_20520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_20525 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IUJ52_20525 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IUJ52_20530 PF00085 Thioredoxin IUJ52_20535 PF07690 Major Facilitator Superfamily IUJ52_20540 PF11756 Nitrous oxide-stimulated promoter IUJ52_20560 PF10414 Sirohaem synthase dimerisation region IUJ52_20560 PF14824 Sirohaem biosynthesis protein central IUJ52_20560 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUJ52_20570 PF13806 Rieske-like [2Fe-2S] domain IUJ52_20575 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IUJ52_20575 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IUJ52_20575 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ52_20575 PF18267 Rubredoxin NAD+ reductase C-terminal domain IUJ52_20575 PF04324 BFD-like [2Fe-2S] binding domain IUJ52_20595 PF02028 BCCT, betaine/carnitine/choline family transporter IUJ52_20600 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_20605 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_20610 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ52_20615 PF00005 ABC transporter IUJ52_20640 PF07715 TonB-dependent Receptor Plug Domain IUJ52_20640 PF00593 TonB dependent receptor IUJ52_20650 PF01032 FecCD transport family IUJ52_20655 PF01497 Periplasmic binding protein IUJ52_20660 PF00005 ABC transporter IUJ52_20665 PF00672 HAMP domain IUJ52_20665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_20670 PF00842 Alanine racemase, C-terminal domain IUJ52_20670 PF01168 Alanine racemase, N-terminal domain IUJ52_20675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_20675 PF03466 LysR substrate binding domain IUJ52_20680 PF02028 BCCT, betaine/carnitine/choline family transporter IUJ52_20690 PF00881 Nitroreductase family IUJ52_20695 PF13419 Haloacid dehalogenase-like hydrolase IUJ52_20700 PF07690 Major Facilitator Superfamily IUJ52_20705 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IUJ52_20705 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IUJ52_20710 PF08125 Mannitol dehydrogenase C-terminal domain IUJ52_20710 PF01232 Mannitol dehydrogenase Rossmann domain IUJ52_20715 PF00325 Bacterial regulatory proteins, crp family IUJ52_20715 PF04198 Putative sugar-binding domain IUJ52_20720 PF03577 Peptidase family C69 IUJ52_20725 PF02322 Cytochrome bd terminal oxidase subunit II IUJ52_20730 PF01654 Cytochrome bd terminal oxidase subunit I IUJ52_20735 PF00384 Molybdopterin oxidoreductase IUJ52_20735 PF01568 Molydopterin dinucleotide binding domain IUJ52_20740 PF01062 Bestrophin, RFP-TM, chloride channel IUJ52_20745 PF03466 LysR substrate binding domain IUJ52_20745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_20750 PF02634 FdhD/NarQ family IUJ52_20760 PF03466 LysR substrate binding domain IUJ52_20760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_20765 PF00296 Luciferase-like monooxygenase IUJ52_20775 PF01145 SPFH domain / Band 7 family IUJ52_20775 PF16200 C-terminal region of band_7 IUJ52_20795 PF02311 AraC-like ligand binding domain IUJ52_20795 PF12833 Helix-turn-helix domain IUJ52_20805 PF00871 Acetokinase family IUJ52_20815 PF07715 TonB-dependent Receptor Plug Domain IUJ52_20815 PF00593 TonB dependent receptor IUJ52_20820 PF12833 Helix-turn-helix domain IUJ52_20825 PF00005 ABC transporter IUJ52_20830 PF01032 FecCD transport family IUJ52_20835 PF01032 FecCD transport family IUJ52_20855 PF00801 PKD domain IUJ52_20855 PF05547 Immune inhibitor A peptidase M6 IUJ52_20860 PF03280 Proteobacterial lipase chaperone protein IUJ52_20865 PF00561 alpha/beta hydrolase fold IUJ52_20870 PF12729 Four helix bundle sensory module for signal transduction IUJ52_20870 PF00672 HAMP domain IUJ52_20870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_20875 PF01037 Lrp/AsnC ligand binding domain IUJ52_20875 PF13404 AsnC-type helix-turn-helix domain IUJ52_20895 PF07690 Major Facilitator Superfamily IUJ52_20905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_20905 PF00672 HAMP domain IUJ52_20920 PF02540 NAD synthase IUJ52_20925 PF03605 Anaerobic c4-dicarboxylate membrane transporter IUJ52_20930 PF00072 Response regulator receiver domain IUJ52_20930 PF04397 LytTr DNA-binding domain IUJ52_20935 PF07694 5TMR of 5TMR-LYT IUJ52_20935 PF06580 Histidine kinase IUJ52_20940 PF00248 Aldo/keto reductase family IUJ52_20955 PF00128 Alpha amylase, catalytic domain IUJ52_20960 PF01447 Thermolysin metallopeptidase, catalytic domain IUJ52_20960 PF07504 Fungalysin/Thermolysin Propeptide Motif IUJ52_20960 PF03413 Peptidase propeptide and YPEB domain IUJ52_20960 PF02868 Thermolysin metallopeptidase, alpha-helical domain IUJ52_20960 PF04151 Bacterial pre-peptidase C-terminal domain IUJ52_20965 PF03922 OmpW family IUJ52_20985 PF02013 Cellulose or protein binding domain IUJ52_20985 PF00150 Cellulase (glycosyl hydrolase family 5) IUJ52_21000 PF01238 Phosphomannose isomerase type I IUJ52_21005 PF00672 HAMP domain IUJ52_21005 PF02743 Cache domain IUJ52_21005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_21010 PF02264 LamB porin IUJ52_21015 PF04041 beta-1,4-mannooligosaccharide phosphorylase IUJ52_21020 PF04041 beta-1,4-mannooligosaccharide phosphorylase IUJ52_21025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUJ52_21025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUJ52_21025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUJ52_21025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUJ52_21030 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IUJ52_21030 PF00356 Bacterial regulatory proteins, lacI family IUJ52_21035 PF00005 ABC transporter IUJ52_21035 PF17912 MalK OB fold domain IUJ52_21045 PF04854 Protein of unknown function, DUF624 IUJ52_21050 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_21055 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_21065 PF01554 MatE IUJ52_21070 PF08543 Phosphomethylpyrimidine kinase IUJ52_21075 PF00005 ABC transporter IUJ52_21080 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_21085 PF09084 NMT1/THI5 like IUJ52_21090 PF03070 TENA/THI-4/PQQC family IUJ52_21095 PF02110 Hydroxyethylthiazole kinase family IUJ52_21100 PF00005 ABC transporter IUJ52_21100 PF00664 ABC transporter transmembrane region IUJ52_21105 PF00664 ABC transporter transmembrane region IUJ52_21105 PF00005 ABC transporter IUJ52_21115 PF12792 CSS motif domain associated with EAL IUJ52_21115 PF00563 EAL domain IUJ52_21120 PF00912 Transglycosylase IUJ52_21140 PF00313 'Cold-shock' DNA-binding domain IUJ52_21145 PF08240 Alcohol dehydrogenase GroES-like domain IUJ52_21145 PF00107 Zinc-binding dehydrogenase IUJ52_21150 PF00155 Aminotransferase class I and II IUJ52_21155 PF00171 Aldehyde dehydrogenase family IUJ52_21160 PF01590 GAF domain IUJ52_21160 PF02954 Bacterial regulatory protein, Fis family IUJ52_21160 PF00158 Sigma-54 interaction domain IUJ52_21165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_21165 PF03466 LysR substrate binding domain IUJ52_21170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ52_21200 PF01966 HD domain IUJ52_21205 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain IUJ52_21205 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain IUJ52_21210 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IUJ52_21215 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain IUJ52_21215 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IUJ52_21230 PF02743 Cache domain IUJ52_21230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_21230 PF00672 HAMP domain IUJ52_21235 PF03466 LysR substrate binding domain IUJ52_21235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_21250 PF02310 B12 binding domain IUJ52_21250 PF02607 B12 binding domain IUJ52_21250 PF02574 Homocysteine S-methyltransferase IUJ52_21250 PF00809 Pterin binding enzyme IUJ52_21250 PF02965 Vitamin B12 dependent methionine synthase, activation domain IUJ52_21255 PF13520 Amino acid permease IUJ52_21265 PF02595 Glycerate kinase family IUJ52_21270 PF02447 GntP family permease IUJ52_21275 PF13556 PucR C-terminal helix-turn-helix domain IUJ52_21275 PF05651 Putative sugar diacid recognition IUJ52_21275 PF17853 GGDEF-like domain IUJ52_21280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ52_21280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ52_21285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ52_21285 PF12793 Sugar transport-related sRNA regulator N-term IUJ52_21305 PF00486 Transcriptional regulatory protein, C terminal IUJ52_21305 PF00072 Response regulator receiver domain IUJ52_21340 PF00577 Outer membrane usher protein IUJ52_21340 PF13954 PapC N-terminal domain IUJ52_21340 PF13953 PapC C-terminal domain IUJ52_21345 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IUJ52_21345 PF02753 Pili assembly chaperone PapD, C-terminal domain IUJ52_21355 PF05736 OprF membrane domain IUJ52_21355 PF00691 OmpA family IUJ52_21360 PF04632 Fusaric acid resistance protein family IUJ52_21365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_21365 PF00529 HlyD membrane-fusion protein of T1SS IUJ52_21380 PF00768 D-alanyl-D-alanine carboxypeptidase IUJ52_21380 PF07943 Penicillin-binding protein 5, C-terminal domain IUJ52_21385 PF00005 ABC transporter IUJ52_21390 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_21395 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ52_21400 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ52_21405 PF01037 Lrp/AsnC ligand binding domain IUJ52_21410 PF00491 Arginase family IUJ52_21415 PF17810 Arginine decarboxylase helical bundle domain IUJ52_21415 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IUJ52_21415 PF17944 Arginine decarboxylase C-terminal helical extension IUJ52_21425 PF00005 ABC transporter IUJ52_21425 PF00571 CBS domain IUJ52_21430 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_21435 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IUJ52_21445 PF00672 HAMP domain IUJ52_21445 PF02743 Cache domain IUJ52_21445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_21455 PF00571 CBS domain IUJ52_21455 PF01769 Divalent cation transporter IUJ52_21455 PF03448 MgtE intracellular N domain IUJ52_21460 PF00166 Chaperonin 10 Kd subunit IUJ52_21465 PF00118 TCP-1/cpn60 chaperonin family IUJ52_21475 PF00490 Delta-aminolevulinic acid dehydratase IUJ52_21480 PF03707 Bacterial signalling protein N terminal repeat IUJ52_21480 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_21480 PF00563 EAL domain IUJ52_21485 PF11849 Domain of unknown function (DUF3369) IUJ52_21495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_21495 PF03466 LysR substrate binding domain IUJ52_21510 PF00696 Amino acid kinase family IUJ52_21510 PF13840 ACT domain IUJ52_21515 PF06339 Ectoine synthase IUJ52_21520 PF00202 Aminotransferase class-III IUJ52_21525 PF00583 Acetyltransferase (GNAT) family IUJ52_21535 PF03741 Integral membrane protein TerC family IUJ52_21545 PF01554 MatE IUJ52_21550 PF01329 Pterin 4 alpha carbinolamine dehydratase IUJ52_21555 PF00351 Biopterin-dependent aromatic amino acid hydroxylase IUJ52_21560 PF13193 AMP-binding enzyme C-terminal domain IUJ52_21560 PF00501 AMP-binding enzyme IUJ52_21565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_21565 PF03466 LysR substrate binding domain IUJ52_21570 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_21570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_21575 PF00486 Transcriptional regulatory protein, C terminal IUJ52_21575 PF00072 Response regulator receiver domain IUJ52_21600 PF08241 Methyltransferase domain IUJ52_21605 PF03466 LysR substrate binding domain IUJ52_21605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_21615 PF00478 IMP dehydrogenase / GMP reductase domain IUJ52_21625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ52_21625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ52_21630 PF01256 Carbohydrate kinase IUJ52_21630 PF03853 YjeF-related protein N-terminus IUJ52_21635 PF00486 Transcriptional regulatory protein, C terminal IUJ52_21635 PF00072 Response regulator receiver domain IUJ52_21640 PF00072 Response regulator receiver domain IUJ52_21640 PF00196 Bacterial regulatory proteins, luxR family IUJ52_21645 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ52_21645 PF01627 Hpt domain IUJ52_21645 PF00989 PAS fold IUJ52_21645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_21645 PF00072 Response regulator receiver domain IUJ52_21645 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_21650 PF03707 Bacterial signalling protein N terminal repeat IUJ52_21650 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_21650 PF00563 EAL domain IUJ52_21660 PF00072 Response regulator receiver domain IUJ52_21660 PF00486 Transcriptional regulatory protein, C terminal IUJ52_21680 PF03889 Alternative ribosome-rescue factor A IUJ52_21685 PF00313 'Cold-shock' DNA-binding domain IUJ52_21690 PF07152 YaeQ protein IUJ52_21695 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_21700 PF00175 Oxidoreductase NAD-binding domain IUJ52_21700 PF00042 Globin IUJ52_21700 PF00970 Oxidoreductase FAD-binding domain IUJ52_21705 PF00158 Sigma-54 interaction domain IUJ52_21705 PF01590 GAF domain IUJ52_21715 PF01546 Peptidase family M20/M25/M40 IUJ52_21715 PF07687 Peptidase dimerisation domain IUJ52_21720 PF01773 Na+ dependent nucleoside transporter N-terminus IUJ52_21720 PF07662 Na+ dependent nucleoside transporter C-terminus IUJ52_21720 PF07670 Nucleoside recognition IUJ52_21730 PF00128 Alpha amylase, catalytic domain IUJ52_21745 PF12729 Four helix bundle sensory module for signal transduction IUJ52_21745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_21745 PF00672 HAMP domain IUJ52_21750 PF07726 ATPase family associated with various cellular activities (AAA) IUJ52_21750 PF17863 AAA lid domain IUJ52_21755 PF01882 Protein of unknown function DUF58 IUJ52_21770 PF00092 von Willebrand factor type A domain IUJ52_21770 PF07584 Aerotolerance regulator N-terminal IUJ52_21785 PF00563 EAL domain IUJ52_21785 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_21795 PF00672 HAMP domain IUJ52_21795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_21795 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IUJ52_21795 PF01627 Hpt domain IUJ52_21795 PF00072 Response regulator receiver domain IUJ52_21795 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_21800 PF00072 Response regulator receiver domain IUJ52_21800 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_21805 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IUJ52_21810 PF04996 Succinylarginine dihydrolase IUJ52_21815 PF00171 Aldehyde dehydrogenase family IUJ52_21820 PF04958 Arginine N-succinyltransferase beta subunit IUJ52_21825 PF04958 Arginine N-succinyltransferase beta subunit IUJ52_21830 PF00202 Aminotransferase class-III IUJ52_21835 PF12833 Helix-turn-helix domain IUJ52_21840 PF13378 Enolase C-terminal domain-like IUJ52_21840 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IUJ52_21850 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_21855 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_21860 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ52_21865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_21865 PF03466 LysR substrate binding domain IUJ52_21890 PF04320 Protein with unknown function (DUF469) IUJ52_21895 PF00582 Universal stress protein family IUJ52_21900 PF00472 RF-1 domain IUJ52_21905 PF12843 Putative quorum-sensing-regulated virulence factor IUJ52_21915 PF01266 FAD dependent oxidoreductase IUJ52_21930 PF00072 Response regulator receiver domain IUJ52_21930 PF00158 Sigma-54 interaction domain IUJ52_21930 PF02954 Bacterial regulatory protein, Fis family IUJ52_21935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_21935 PF00512 His Kinase A (phospho-acceptor) domain IUJ52_21935 PF02743 Cache domain IUJ52_21955 PF12729 Four helix bundle sensory module for signal transduction IUJ52_21955 PF00672 HAMP domain IUJ52_21955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_21960 PF13188 PAS domain IUJ52_21960 PF03707 Bacterial signalling protein N terminal repeat IUJ52_21960 PF00563 EAL domain IUJ52_21960 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_21965 PF07690 Major Facilitator Superfamily IUJ52_21970 PF03009 Glycerophosphoryl diester phosphodiesterase family IUJ52_21975 PF01048 Phosphorylase superfamily IUJ52_21980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_21980 PF03466 LysR substrate binding domain IUJ52_21985 PF00356 Bacterial regulatory proteins, lacI family IUJ52_21990 PF00294 pfkB family carbohydrate kinase IUJ52_21995 PF13407 Periplasmic binding protein domain IUJ52_22000 PF02653 Branched-chain amino acid transport system / permease component IUJ52_22005 PF00005 ABC transporter IUJ52_22010 PF05025 RbsD / FucU transport protein family IUJ52_22025 PF01471 Putative peptidoglycan binding domain IUJ52_22025 PF04717 Type VI secretion system, phage-baseplate injector IUJ52_22035 PF14331 ImcF-related N-terminal domain IUJ52_22035 PF06761 Intracellular multiplication and human macrophage-killing IUJ52_22035 PF06744 Type VI secretion protein IcmF C-terminal IUJ52_22050 PF02954 Bacterial regulatory protein, Fis family IUJ52_22050 PF00158 Sigma-54 interaction domain IUJ52_22055 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ52_22055 PF17871 AAA lid domain IUJ52_22055 PF07724 AAA domain (Cdc48 subfamily) IUJ52_22055 PF00004 ATPase family associated with various cellular activities (AAA) IUJ52_22065 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IUJ52_22085 PF05947 Type VI secretion system, TssF IUJ52_22095 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IUJ52_22115 PF01037 Lrp/AsnC ligand binding domain IUJ52_22120 PF01810 LysE type translocator IUJ52_22125 PF01047 MarR family IUJ52_22135 PF00892 EamA-like transporter family IUJ52_22140 PF00849 RNA pseudouridylate synthase IUJ52_22145 PF16925 Tetracyclin repressor-like, C-terminal domain IUJ52_22145 PF00440 Bacterial regulatory proteins, tetR family IUJ52_22150 PF16884 N-terminal domain of oxidoreductase IUJ52_22150 PF00107 Zinc-binding dehydrogenase IUJ52_22160 PF01740 STAS domain IUJ52_22160 PF00916 Sulfate permease family IUJ52_22165 PF13419 Haloacid dehalogenase-like hydrolase IUJ52_22170 PF07702 UTRA domain IUJ52_22170 PF00392 Bacterial regulatory proteins, gntR family IUJ52_22175 PF01547 Bacterial extracellular solute-binding protein IUJ52_22195 PF00005 ABC transporter IUJ52_22195 PF08402 TOBE domain IUJ52_22205 PF00563 EAL domain IUJ52_22205 PF12792 CSS motif domain associated with EAL IUJ52_22210 PF00248 Aldo/keto reductase family IUJ52_22215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ52_22220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_22220 PF03466 LysR substrate binding domain IUJ52_22225 PF07690 Major Facilitator Superfamily IUJ52_22245 PF00581 Rhodanese-like domain IUJ52_22250 PF00691 OmpA family IUJ52_22250 PF13677 Membrane MotB of proton-channel complex MotA/MotB IUJ52_22260 PF13953 PapC C-terminal domain IUJ52_22260 PF00577 Outer membrane usher protein IUJ52_22260 PF13954 PapC N-terminal domain IUJ52_22265 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IUJ52_22265 PF02753 Pili assembly chaperone PapD, C-terminal domain IUJ52_22310 PF01479 S4 domain IUJ52_22310 PF00579 tRNA synthetases class I (W and Y) IUJ52_22315 PF00672 HAMP domain IUJ52_22315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_22315 PF02743 Cache domain IUJ52_22320 PF03928 Haem-degrading IUJ52_22325 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IUJ52_22325 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IUJ52_22330 PF00455 DeoR C terminal sensor domain IUJ52_22330 PF08220 DeoR-like helix-turn-helix domain IUJ52_22335 PF02028 BCCT, betaine/carnitine/choline family transporter IUJ52_22340 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IUJ52_22340 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IUJ52_22355 PF16458 Beta-prism lectin IUJ52_22355 PF12563 Hemolytic toxin N terminal IUJ52_22355 PF07968 Leukocidin/Hemolysin toxin family IUJ52_22360 PF00657 GDSL-like Lipase/Acylhydrolase IUJ52_22365 PF07274 Protein of unknown function (DUF1440) IUJ52_22370 PF00892 EamA-like transporter family IUJ52_22375 PF00392 Bacterial regulatory proteins, gntR family IUJ52_22375 PF00155 Aminotransferase class I and II IUJ52_22385 PF02567 Phenazine biosynthesis-like protein IUJ52_22390 PF12833 Helix-turn-helix domain IUJ52_22390 PF02311 AraC-like ligand binding domain IUJ52_22410 PF08448 PAS fold IUJ52_22410 PF13426 PAS domain IUJ52_22410 PF08447 PAS fold IUJ52_22410 PF00563 EAL domain IUJ52_22410 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_22410 PF05231 MASE1 IUJ52_22415 PF01554 MatE IUJ52_22420 PF00793 DAHP synthetase I family IUJ52_22430 PF12706 Beta-lactamase superfamily domain IUJ52_22435 PF01040 UbiA prenyltransferase family IUJ52_22440 PF02628 Cytochrome oxidase assembly protein IUJ52_22460 PF00510 Cytochrome c oxidase subunit III IUJ52_22465 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 IUJ52_22470 PF00115 Cytochrome C and Quinol oxidase polypeptide I IUJ52_22475 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IUJ52_22475 PF02790 Cytochrome C oxidase subunit II, transmembrane domain IUJ52_22480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUJ52_22480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUJ52_22480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUJ52_22480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUJ52_22485 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ52_22495 PF01810 LysE type translocator IUJ52_22515 PF01557 Fumarylacetoacetate (FAA) hydrolase family IUJ52_22520 PF01047 MarR family IUJ52_22525 PF02566 OsmC-like protein IUJ52_22530 PF00267 Gram-negative porin IUJ52_22535 PF00462 Glutaredoxin IUJ52_22545 PF07690 Major Facilitator Superfamily IUJ52_22550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_22550 PF03466 LysR substrate binding domain IUJ52_22555 PF08447 PAS fold IUJ52_22555 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_22555 PF00563 EAL domain IUJ52_22555 PF08448 PAS fold IUJ52_22560 PF01476 LysM domain IUJ52_22560 PF08525 Opacity-associated protein A N-terminal motif IUJ52_22560 PF01551 Peptidase family M23 IUJ52_22575 PF00916 Sulfate permease family IUJ52_22575 PF01740 STAS domain IUJ52_22580 PF07670 Nucleoside recognition IUJ52_22590 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_22590 PF17152 Periplasmic sensor domain IUJ52_22595 PF00005 ABC transporter IUJ52_22600 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_22605 PF00528 Binding-protein-dependent transport system inner membrane component IUJ52_22610 PF12849 PBP superfamily domain IUJ52_22615 PF00672 HAMP domain IUJ52_22615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_22620 PF00271 Helicase conserved C-terminal domain IUJ52_22620 PF00270 DEAD/DEAH box helicase IUJ52_22645 PF00145 C-5 cytosine-specific DNA methylase IUJ52_22665 PF02899 Phage integrase, N-terminal SAM-like domain IUJ52_22665 PF00589 Phage integrase family IUJ52_22670 PF03734 L,D-transpeptidase catalytic domain IUJ52_22670 PF17969 L,D-transpeptidase C-terminal domain IUJ52_22670 PF01476 LysM domain IUJ52_22675 PF03441 FAD binding domain of DNA photolyase IUJ52_22675 PF00875 DNA photolyase IUJ52_22680 PF13411 MerR HTH family regulatory protein IUJ52_22685 PF08349 Protein of unknown function (DUF1722) IUJ52_22690 PF01048 Phosphorylase superfamily IUJ52_22705 PF00990 Diguanylate cyclase, GGDEF domain IUJ52_22710 PF11742 Protein of unknown function (DUF3302) IUJ52_22715 PF00529 HlyD membrane-fusion protein of T1SS IUJ52_22715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ52_22745 PF07238 PilZ domain IUJ52_22745 PF12945 Flagellar protein YcgR IUJ52_22750 PF03616 Sodium/glutamate symporter IUJ52_22765 PF02630 SCO1/SenC IUJ52_22775 PF03193 RsgA GTPase IUJ52_22780 PF00375 Sodium:dicarboxylate symporter family IUJ52_22795 PF02264 LamB porin IUJ52_22800 PF00128 Alpha amylase, catalytic domain IUJ52_22800 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IUJ52_22805 PF00664 ABC transporter transmembrane region IUJ52_22805 PF00005 ABC transporter IUJ52_22825 PF12838 4Fe-4S dicluster domain IUJ52_22825 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ52_22825 PF00384 Molybdopterin oxidoreductase IUJ52_22825 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IUJ52_22825 PF01568 Molydopterin dinucleotide binding domain IUJ52_22840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_22840 PF00672 HAMP domain IUJ52_22850 PF00005 ABC transporter IUJ52_22855 PF07702 UTRA domain IUJ52_22855 PF00392 Bacterial regulatory proteins, gntR family IUJ52_22860 PF08329 Chitinase A, N-terminal domain IUJ52_22860 PF00704 Glycosyl hydrolases family 18 IUJ52_22865 PF01212 Beta-eliminating lyase IUJ52_22870 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IUJ52_22875 PF01966 HD domain IUJ52_22880 PF13302 Acetyltransferase (GNAT) domain IUJ52_22885 PF00939 Sodium:sulfate symporter transmembrane region IUJ52_22910 PF01124 MAPEG family IUJ52_22930 PF04717 Type VI secretion system, phage-baseplate injector IUJ52_22935 PF05638 Type VI secretion system effector, Hcp IUJ52_22940 PF02806 Alpha amylase, C-terminal all-beta domain IUJ52_22940 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IUJ52_22940 PF00128 Alpha amylase, catalytic domain IUJ52_22945 PF02446 4-alpha-glucanotransferase IUJ52_22950 PF00343 Carbohydrate phosphorylase IUJ52_22955 PF17874 MalT-like TPR region IUJ52_22955 PF00196 Bacterial regulatory proteins, luxR family IUJ52_22960 PF10928 Protein of unknown function (DUF2810) IUJ52_22965 PF01040 UbiA prenyltransferase family IUJ52_22970 PF03626 Prokaryotic Cytochrome C oxidase subunit IV IUJ52_22975 PF00510 Cytochrome c oxidase subunit III IUJ52_22980 PF00115 Cytochrome C and Quinol oxidase polypeptide I IUJ52_22985 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IUJ52_22985 PF06481 COX Aromatic Rich Motif IUJ52_22995 PF00672 HAMP domain IUJ52_22995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_22995 PF17200 Single Cache domain 2 IUJ52_23000 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IUJ52_23000 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IUJ52_23005 PF03466 LysR substrate binding domain IUJ52_23005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_23015 PF01709 Transcriptional regulator IUJ52_23035 PF18607 ParA helix turn helix domain IUJ52_23035 PF13614 AAA domain IUJ52_23040 PF08775 ParB family IUJ52_23040 PF02195 ParB-like nuclease domain IUJ52_23045 PF13416 Bacterial extracellular solute-binding protein IUJ52_23050 PF05127 Helicase IUJ52_23050 PF13718 GNAT acetyltransferase 2 IUJ52_23060 PF00072 Response regulator receiver domain IUJ52_23065 PF01627 Hpt domain IUJ52_23065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ52_23065 PF02895 Signal transducing histidine kinase, homodimeric domain IUJ52_23065 PF01584 CheW-like domain IUJ52_23065 PF09078 CheY binding IUJ52_23070 PF01584 CheW-like domain IUJ52_23075 PF01584 CheW-like domain IUJ52_23080 PF02203 Tar ligand binding domain homologue IUJ52_23080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_23080 PF00672 HAMP domain IUJ52_23085 PF03705 CheR methyltransferase, all-alpha domain IUJ52_23085 PF01739 CheR methyltransferase, SAM binding domain IUJ52_23090 PF03975 CheD chemotactic sensory transduction IUJ52_23095 PF01339 CheB methylesterase IUJ52_23095 PF00072 Response regulator receiver domain IUJ52_23100 PF02743 Cache domain IUJ52_23100 PF00672 HAMP domain IUJ52_23100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_23110 PF00486 Transcriptional regulatory protein, C terminal IUJ52_23110 PF00072 Response regulator receiver domain IUJ52_23120 PF01243 Pyridoxamine 5'-phosphate oxidase IUJ52_23120 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IUJ52_23125 PF00072 Response regulator receiver domain IUJ52_23125 PF00196 Bacterial regulatory proteins, luxR family IUJ52_23130 PF03781 Sulfatase-modifying factor enzyme 1 IUJ52_23140 PF12833 Helix-turn-helix domain IUJ52_23145 PF01619 Proline dehydrogenase IUJ52_23145 PF14850 DNA-binding domain of Proline dehydrogenase IUJ52_23145 PF00171 Aldehyde dehydrogenase family IUJ52_23145 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IUJ52_23155 PF00474 Sodium:solute symporter family IUJ52_23165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ52_23165 PF00672 HAMP domain IUJ52_23170 PF01037 Lrp/AsnC ligand binding domain IUJ52_23175 PF00171 Aldehyde dehydrogenase family IUJ52_23180 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IUJ52_23190 PF00270 DEAD/DEAH box helicase IUJ52_23190 PF00271 Helicase conserved C-terminal domain IUJ52_23200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ52_23200 PF03466 LysR substrate binding domain IUJ52_23205 PF08241 Methyltransferase domain IUJ52_23215 PF00376 MerR family regulatory protein IUJ52_23215 PF09278 MerR, DNA binding IUJ52_23220 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IUJ52_23225 PF00266 Aminotransferase class-V IUJ52_23230 PF01037 Lrp/AsnC ligand binding domain IUJ52_23235 PF02447 GntP family permease IUJ52_23240 PF01370 NAD dependent epimerase/dehydratase family IUJ52_23245 PF01261 Xylose isomerase-like TIM barrel IUJ52_23250 PF00596 Class II Aldolase and Adducin N-terminal domain IUJ52_23255 PF17042 Nucleotide-binding C-terminal domain IUJ52_23255 PF07005 Sugar-binding N-terminal domain IUJ52_23260 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IUJ52_23260 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase