locus-tag class description LUM42_00005 PF00308 Bacterial dnaA protein LUM42_00005 PF08299 Bacterial dnaA protein helix-turn-helix LUM42_00005 PF11638 DnaA N-terminal domain LUM42_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LUM42_00010 PF02767 DNA polymerase III beta subunit, central domain LUM42_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LUM42_00015 PF02463 RecF/RecN/SMC N terminal domain LUM42_00020 PF01751 Toprim domain LUM42_00020 PF18053 DNA gyrase B subunit insert domain LUM42_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_00020 PF00204 DNA gyrase B LUM42_00020 PF00986 DNA gyrase B subunit, carboxyl terminus LUM42_00030 PF00011 Hsp20/alpha crystallin family LUM42_00035 PF00155 Aminotransferase class I and II LUM42_00040 PF05746 DALR anticodon binding domain LUM42_00040 PF02092 Glycyl-tRNA synthetase beta subunit LUM42_00045 PF02091 Glycyl-tRNA synthetase alpha subunit LUM42_00050 PF01169 Uncharacterized protein family UPF0016 LUM42_00060 PF01206 Sulfurtransferase TusA LUM42_00070 PF00990 Diguanylate cyclase, GGDEF domain LUM42_00080 PF00990 Diguanylate cyclase, GGDEF domain LUM42_00085 PF03466 LysR substrate binding domain LUM42_00085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_00090 PF08240 Alcohol dehydrogenase GroES-like domain LUM42_00090 PF00107 Zinc-binding dehydrogenase LUM42_00095 PF00291 Pyridoxal-phosphate dependent enzyme LUM42_00095 PF00585 C-terminal regulatory domain of Threonine dehydratase LUM42_00100 PF00920 Dehydratase family LUM42_00105 PF01063 Amino-transferase class IV LUM42_00115 PF00205 Thiamine pyrophosphate enzyme, central domain LUM42_00115 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LUM42_00115 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LUM42_00225 PF01553 Acyltransferase LUM42_00230 PF01323 DSBA-like thioredoxin domain LUM42_00235 PF01636 Phosphotransferase enzyme family LUM42_00240 PF13746 4Fe-4S dicluster domain LUM42_00240 PF12801 4Fe-4S binding domain LUM42_00240 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LUM42_00245 PF06288 Protein of unknown function (DUF1040) LUM42_00250 PF07070 SpoOM protein LUM42_00255 PF03006 Haemolysin-III related LUM42_00265 PF02386 Cation transport protein LUM42_00270 PF02080 TrkA-C domain LUM42_00270 PF02254 TrkA-N domain LUM42_00275 PF01029 NusB family LUM42_00275 PF01189 16S rRNA methyltransferase RsmB/F LUM42_00280 PF02911 Formyl transferase, C-terminal domain LUM42_00280 PF00551 Formyl transferase LUM42_00285 PF01327 Polypeptide deformylase LUM42_00295 PF02481 DNA recombination-mediator protein A LUM42_00295 PF17782 DprA winged helix domain LUM42_00300 PF04361 Protein of unknown function (DUF494) LUM42_00305 PF01396 Topoisomerase DNA binding C4 zinc finger LUM42_00310 PF02222 ATP-grasp domain LUM42_00310 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LUM42_00315 PF00731 AIR carboxylase LUM42_00320 PF01300 Telomere recombination LUM42_00325 PF01218 Coproporphyrinogen III oxidase LUM42_00330 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LUM42_00330 PF01488 Shikimate / quinate 5-dehydrogenase LUM42_00330 PF08501 Shikimate dehydrogenase substrate binding domain LUM42_00335 PF07369 Protein of unknown function (DUF1488) LUM42_00340 PF00132 Bacterial transferase hexapeptide (six repeats) LUM42_00380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_00380 PF03466 LysR substrate binding domain LUM42_00385 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LUM42_00385 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LUM42_00390 PF04380 Membrane fusogenic activity LUM42_00395 PF00873 AcrB/AcrD/AcrF family LUM42_00400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_00405 PF00440 Bacterial regulatory proteins, tetR family LUM42_00410 PF00580 UvrD/REP helicase N-terminal domain LUM42_00410 PF13361 UvrD-like helicase C-terminal domain LUM42_00415 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LUM42_00445 PF00005 ABC transporter LUM42_00445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LUM42_00450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LUM42_00455 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_00460 PF12911 N-terminal TM domain of oligopeptide transport permease C LUM42_00460 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_00495 PF00873 AcrB/AcrD/AcrF family LUM42_00500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_00500 PF00529 HlyD membrane-fusion protein of T1SS LUM42_00510 PF12802 MarR family LUM42_00515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LUM42_00515 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_00520 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LUM42_00525 PF01432 Peptidase family M3 LUM42_00545 PF05114 Protein of unknown function (DUF692) LUM42_00555 PF00580 UvrD/REP helicase N-terminal domain LUM42_00555 PF13361 UvrD-like helicase C-terminal domain LUM42_00565 PF01810 LysE type translocator LUM42_00575 PF00892 EamA-like transporter family LUM42_00580 PF00570 HRDC domain LUM42_00580 PF00271 Helicase conserved C-terminal domain LUM42_00580 PF09382 RQC domain LUM42_00580 PF16124 RecQ zinc-binding LUM42_00580 PF00270 DEAD/DEAH box helicase LUM42_00595 PF00005 ABC transporter LUM42_00595 PF00664 ABC transporter transmembrane region LUM42_00600 PF07715 TonB-dependent Receptor Plug Domain LUM42_00600 PF00593 TonB dependent receptor LUM42_00605 PF00005 ABC transporter LUM42_00610 PF01497 Periplasmic binding protein LUM42_00615 PF01032 FecCD transport family LUM42_00620 PF03350 Uncharacterized protein family, UPF0114 LUM42_00650 PF00075 RNase H LUM42_00655 PF02673 Bacitracin resistance protein BacA LUM42_00660 PF01699 Sodium/calcium exchanger protein LUM42_00665 PF05552 Conserved TM helix LUM42_00665 PF00924 Mechanosensitive ion channel LUM42_00670 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LUM42_00685 PF01810 LysE type translocator LUM42_00715 PF04002 RadC-like JAB domain LUM42_00740 PF01569 PAP2 superfamily LUM42_00745 PF08019 Phosphoethanolamine transferase EptA/EptB LUM42_00745 PF00884 Sulfatase LUM42_00750 PF01219 Prokaryotic diacylglycerol kinase LUM42_00755 PF00072 Response regulator receiver domain LUM42_00755 PF00486 Transcriptional regulatory protein, C terminal LUM42_00760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_00760 PF00989 PAS fold LUM42_00760 PF00512 His Kinase A (phospho-acceptor) domain LUM42_00760 PF16736 Single Cache-like LUM42_00770 PF08340 Domain of unknown function (DUF1732) LUM42_00770 PF03755 YicC-like family, N-terminal region LUM42_00775 PF03725 3' exoribonuclease family, domain 2 LUM42_00775 PF01138 3' exoribonuclease family, domain 1 LUM42_00780 PF00156 Phosphoribosyl transferase domain LUM42_00785 PF03279 Bacterial lipid A biosynthesis acyltransferase LUM42_00790 PF00440 Bacterial regulatory proteins, tetR family LUM42_00795 PF04127 DNA / pantothenate metabolism flavoprotein LUM42_00795 PF02441 Flavoprotein LUM42_00800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_00800 PF17200 Single Cache domain 2 LUM42_00800 PF00672 HAMP domain LUM42_00805 PF04002 RadC-like JAB domain LUM42_00810 PF00830 Ribosomal L28 family LUM42_00815 PF00471 Ribosomal protein L33 LUM42_00825 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LUM42_00825 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LUM42_00825 PF06827 Zinc finger found in FPG and IleRS LUM42_00830 PF01370 NAD dependent epimerase/dehydratase family LUM42_00840 PF01467 Cytidylyltransferase-like LUM42_00845 PF13439 Glycosyltransferase Family 4 LUM42_00845 PF00534 Glycosyl transferases group 1 LUM42_00850 PF13439 Glycosyltransferase Family 4 LUM42_00850 PF00534 Glycosyl transferases group 1 LUM42_00855 PF00535 Glycosyl transferase family 2 LUM42_00860 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LUM42_00870 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LUM42_00875 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LUM42_00880 PF13477 Glycosyl transferase 4-like LUM42_00880 PF00534 Glycosyl transferases group 1 LUM42_00890 PF03279 Bacterial lipid A biosynthesis acyltransferase LUM42_00895 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LUM42_00895 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LUM42_00895 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LUM42_00900 PF01370 NAD dependent epimerase/dehydratase family LUM42_00905 PF06082 Exopolysaccharide biosynthesis protein YbjH LUM42_00915 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF LUM42_00925 PF02563 Polysaccharide biosynthesis/export protein LUM42_00925 PF10531 SLBB domain LUM42_00925 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LUM42_00930 PF01451 Low molecular weight phosphotyrosine protein phosphatase LUM42_00935 PF13614 AAA domain LUM42_00935 PF02706 Chain length determinant protein LUM42_00935 PF13807 G-rich domain on putative tyrosine kinase LUM42_00940 PF16363 GDP-mannose 4,6 dehydratase LUM42_00950 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LUM42_00950 PF01348 Type II intron maturase LUM42_00955 PF01609 Transposase DDE domain LUM42_00955 PF13808 DDE_Tnp_1-associated LUM42_00970 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LUM42_00970 PF01348 Type II intron maturase LUM42_00975 PF13808 DDE_Tnp_1-associated LUM42_00975 PF01609 Transposase DDE domain LUM42_00980 PF13472 GDSL-like Lipase/Acylhydrolase family LUM42_00980 PF02348 Cytidylyltransferase LUM42_00985 PF08666 SAF domain LUM42_00985 PF03102 NeuB family LUM42_00990 PF02350 UDP-N-acetylglucosamine 2-epimerase LUM42_01020 PF01609 Transposase DDE domain LUM42_01020 PF13808 DDE_Tnp_1-associated LUM42_01025 PF00535 Glycosyl transferase family 2 LUM42_01030 PF02397 Bacterial sugar transferase LUM42_01040 PF13737 Transposase DDE domain LUM42_01050 PF13407 Periplasmic binding protein domain LUM42_01065 PF12167 Arm DNA-binding domain LUM42_01065 PF00589 Phage integrase family LUM42_01125 PF13737 Transposase DDE domain LUM42_01130 PF10996 Beta-Casp domain LUM42_01130 PF00753 Metallo-beta-lactamase superfamily LUM42_01130 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LUM42_01145 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LUM42_01145 PF01464 Transglycosylase SLT domain LUM42_01165 PF03167 Uracil DNA glycosylase superfamily LUM42_01170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LUM42_01175 PF04222 Protein of unknown function (DUF416) LUM42_01180 PF00924 Mechanosensitive ion channel LUM42_01185 PF00571 CBS domain LUM42_01185 PF01595 Cyclin M transmembrane N-terminal domain LUM42_01190 PF00216 Bacterial DNA-binding protein LUM42_01200 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LUM42_01200 PF02843 Phosphoribosylglycinamide synthetase, C domain LUM42_01200 PF02844 Phosphoribosylglycinamide synthetase, N domain LUM42_01205 PF02142 MGS-like domain LUM42_01205 PF01808 AICARFT/IMPCHase bienzyme LUM42_01215 PF13411 MerR HTH family regulatory protein LUM42_01220 PF00480 ROK family LUM42_01225 PF01238 Phosphomannose isomerase type I LUM42_01230 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LUM42_01230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LUM42_01230 PF02378 Phosphotransferase system, EIIC LUM42_01235 PF12833 Helix-turn-helix domain LUM42_01245 PF02378 Phosphotransferase system, EIIC LUM42_01245 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LUM42_01250 PF17200 Single Cache domain 2 LUM42_01250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_01250 PF00672 HAMP domain LUM42_01285 PF02954 Bacterial regulatory protein, Fis family LUM42_01290 PF01207 Dihydrouridine synthase (Dus) LUM42_01300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LUM42_01300 PF00289 Biotin carboxylase, N-terminal domain LUM42_01300 PF02785 Biotin carboxylase C-terminal domain LUM42_01305 PF00364 Biotin-requiring enzyme LUM42_01310 PF01220 Dehydroquinase class II LUM42_01315 PF16177 Acetyl-coenzyme A synthetase N-terminus LUM42_01315 PF00501 AMP-binding enzyme LUM42_01315 PF13193 AMP-binding enzyme C-terminal domain LUM42_01330 PF12832 MFS_1 like family LUM42_01335 PF00512 His Kinase A (phospho-acceptor) domain LUM42_01335 PF01627 Hpt domain LUM42_01335 PF00072 Response regulator receiver domain LUM42_01335 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_01335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_01340 PF02541 Ppx/GppA phosphatase family LUM42_01345 PF00271 Helicase conserved C-terminal domain LUM42_01345 PF00270 DEAD/DEAH box helicase LUM42_01350 PF00085 Thioredoxin LUM42_01355 PF07497 Rho termination factor, RNA-binding domain LUM42_01355 PF07498 Rho termination factor, N-terminal domain LUM42_01355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LUM42_01365 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LUM42_01370 PF00111 2Fe-2S iron-sulfur cluster binding domain LUM42_01370 PF00970 Oxidoreductase FAD-binding domain LUM42_01370 PF00175 Oxidoreductase NAD-binding domain LUM42_01375 PF00175 Oxidoreductase NAD-binding domain LUM42_01410 PF13091 PLD-like domain LUM42_01420 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LUM42_01420 PF01565 FAD binding domain LUM42_01425 PF02237 Biotin protein ligase C terminal domain LUM42_01425 PF03099 Biotin/lipoate A/B protein ligase family LUM42_01425 PF08279 HTH domain LUM42_01430 PF00485 Phosphoribulokinase / Uridine kinase family LUM42_01455 PF03144 Elongation factor Tu domain 2 LUM42_01455 PF00009 Elongation factor Tu GTP binding domain LUM42_01455 PF03143 Elongation factor Tu C-terminal domain LUM42_01460 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LUM42_01465 PF00467 KOW motif LUM42_01465 PF02357 Transcription termination factor nusG LUM42_01470 PF00298 Ribosomal protein L11, RNA binding domain LUM42_01470 PF03946 Ribosomal protein L11, N-terminal domain LUM42_01475 PF00687 Ribosomal protein L1p/L10e family LUM42_01480 PF00466 Ribosomal protein L10 LUM42_01485 PF16320 Ribosomal protein L7/L12 dimerisation domain LUM42_01485 PF00542 Ribosomal protein L7/L12 C-terminal domain LUM42_01490 PF00562 RNA polymerase Rpb2, domain 6 LUM42_01490 PF04563 RNA polymerase beta subunit LUM42_01490 PF04565 RNA polymerase Rpb2, domain 3 LUM42_01490 PF04560 RNA polymerase Rpb2, domain 7 LUM42_01490 PF10385 RNA polymerase beta subunit external 1 domain LUM42_01490 PF04561 RNA polymerase Rpb2, domain 2 LUM42_01495 PF00623 RNA polymerase Rpb1, domain 2 LUM42_01495 PF04997 RNA polymerase Rpb1, domain 1 LUM42_01495 PF04998 RNA polymerase Rpb1, domain 5 LUM42_01495 PF05000 RNA polymerase Rpb1, domain 4 LUM42_01495 PF04983 RNA polymerase Rpb1, domain 3 LUM42_01500 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LUM42_01505 PF09297 NADH pyrophosphatase zinc ribbon domain LUM42_01505 PF00293 NUDIX domain LUM42_01510 PF01208 Uroporphyrinogen decarboxylase (URO-D) LUM42_01515 PF08360 QacR-like protein, C-terminal region LUM42_01515 PF00440 Bacterial regulatory proteins, tetR family LUM42_01525 PF01551 Peptidase family M23 LUM42_01530 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LUM42_01530 PF01676 Metalloenzyme superfamily LUM42_01540 PF02743 Cache domain LUM42_01540 PF00672 HAMP domain LUM42_01540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_01545 PF02080 TrkA-C domain LUM42_01545 PF03600 Citrate transporter LUM42_01550 PF02666 Phosphatidylserine decarboxylase LUM42_01555 PF03193 RsgA GTPase LUM42_01560 PF00929 Exonuclease LUM42_01610 PF08331 Domain of unknown function (DUF1730) LUM42_01615 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LUM42_01620 PF01520 N-acetylmuramoyl-L-alanine amidase LUM42_01625 PF01119 DNA mismatch repair protein, C-terminal domain LUM42_01625 PF08676 MutL C terminal dimerisation domain LUM42_01635 PF17209 Hfq protein LUM42_01640 PF16360 GTP-binding GTPase Middle Region LUM42_01640 PF01926 50S ribosome-binding GTPase LUM42_01640 PF13167 GTP-binding GTPase N-terminal LUM42_01645 PF01145 SPFH domain / Band 7 family LUM42_01645 PF12221 Bacterial membrane protein N terminal LUM42_01650 PF01145 SPFH domain / Band 7 family LUM42_01655 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LUM42_01660 PF04102 SlyX LUM42_01670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LUM42_01670 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LUM42_01675 PF13309 HTH domain LUM42_01675 PF08348 YheO-like PAS domain LUM42_01680 PF02635 DsrE/DsrF-like family LUM42_01685 PF02635 DsrE/DsrF-like family LUM42_01690 PF04077 DsrH like protein LUM42_01695 PF00164 Ribosomal protein S12/S23 LUM42_01700 PF00177 Ribosomal protein S7p/S5e LUM42_01705 PF00679 Elongation factor G C-terminus LUM42_01705 PF14492 Elongation Factor G, domain II LUM42_01705 PF03764 Elongation factor G, domain IV LUM42_01705 PF00009 Elongation factor Tu GTP binding domain LUM42_01705 PF03144 Elongation factor Tu domain 2 LUM42_01710 PF03144 Elongation factor Tu domain 2 LUM42_01710 PF00009 Elongation factor Tu GTP binding domain LUM42_01710 PF03143 Elongation factor Tu C-terminal domain LUM42_01715 PF04324 BFD-like [2Fe-2S] binding domain LUM42_01720 PF00210 Ferritin-like domain LUM42_01725 PF01250 Ribosomal protein S6 LUM42_01730 PF00436 Single-strand binding protein family LUM42_01735 PF01084 Ribosomal protein S18 LUM42_01740 PF03948 Ribosomal protein L9, C-terminal domain LUM42_01740 PF01281 Ribosomal protein L9, N-terminal domain LUM42_01750 PF03796 DnaB-like helicase C terminal domain LUM42_01750 PF00772 DnaB-like helicase N terminal domain LUM42_01755 PF00842 Alanine racemase, C-terminal domain LUM42_01755 PF01168 Alanine racemase, N-terminal domain LUM42_01760 PF01894 Uncharacterised protein family UPF0047 LUM42_01765 PF00342 Phosphoglucose isomerase LUM42_01775 PF01475 Ferric uptake regulator family LUM42_01780 PF01207 Dihydrouridine synthase (Dus) LUM42_01800 PF00667 FAD binding domain LUM42_01800 PF00258 Flavodoxin LUM42_01800 PF00175 Oxidoreductase NAD-binding domain LUM42_01805 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LUM42_01805 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LUM42_01810 PF01507 Phosphoadenosine phosphosulfate reductase family LUM42_01870 PF00999 Sodium/hydrogen exchanger family LUM42_01875 PF02310 B12 binding domain LUM42_01875 PF02607 B12 binding domain LUM42_01875 PF02965 Vitamin B12 dependent methionine synthase, activation domain LUM42_01875 PF00809 Pterin binding enzyme LUM42_01875 PF02574 Homocysteine S-methyltransferase LUM42_01880 PF00696 Amino acid kinase family LUM42_01880 PF01842 ACT domain LUM42_01885 PF00266 Aminotransferase class-V LUM42_01895 PF00005 ABC transporter LUM42_01895 PF17760 UvrA interaction domain LUM42_01895 PF17755 UvrA DNA-binding domain LUM42_01900 PF00483 Nucleotidyl transferase LUM42_01905 PF00196 Bacterial regulatory proteins, luxR family LUM42_01910 PF00436 Single-strand binding protein family LUM42_01915 PF00563 EAL domain LUM42_01915 PF17157 Gammaproteobacterial periplasmic sensor domain LUM42_01915 PF00990 Diguanylate cyclase, GGDEF domain LUM42_01935 PF00263 Bacterial type II and III secretion system protein LUM42_01935 PF03958 Bacterial type II/III secretion system short domain LUM42_01940 PF13401 AAA domain LUM42_01940 PF01471 Putative peptidoglycan binding domain LUM42_01950 PF00437 Type II/IV secretion system protein LUM42_01950 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LUM42_01955 PF00482 Type II secretion system (T2SS), protein F LUM42_01965 PF07963 Prokaryotic N-terminal methylation motif LUM42_01970 PF07963 Prokaryotic N-terminal methylation motif LUM42_02005 PF04085 rod shape-determining protein MreC LUM42_02010 PF04093 rod shape-determining protein MreD LUM42_02015 PF02545 Maf-like protein LUM42_02020 PF00575 S1 RNA binding domain LUM42_02020 PF10150 Ribonuclease E/G family LUM42_02025 PF13502 AsmA-like C-terminal region LUM42_02025 PF13116 Protein of unknown function LUM42_02030 PF00795 Carbon-nitrogen hydrolase LUM42_02035 PF01523 Putative modulator of DNA gyrase LUM42_02040 PF06877 Regulator of ribonuclease activity B LUM42_02055 PF00582 Universal stress protein family LUM42_02070 PF01316 Arginine repressor, DNA binding domain LUM42_02070 PF02863 Arginine repressor, C-terminal domain LUM42_02075 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LUM42_02075 PF00056 lactate/malate dehydrogenase, NAD binding domain LUM42_02080 PF13520 Amino acid permease LUM42_02085 PF00348 Polyprenyl synthetase LUM42_02090 PF00829 Ribosomal prokaryotic L21 protein LUM42_02095 PF01016 Ribosomal L27 protein LUM42_02100 PF01018 GTP1/OBG LUM42_02100 PF01926 50S ribosome-binding GTPase LUM42_02105 PF06738 Putative threonine/serine exporter LUM42_02110 PF12821 Threonine/Serine exporter, ThrE LUM42_02115 PF00186 Dihydrofolate reductase LUM42_02120 PF00149 Calcineurin-like phosphoesterase LUM42_02125 PF04379 ApaG domain LUM42_02130 PF00398 Ribosomal RNA adenine dimethylase LUM42_02135 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LUM42_02140 PF09312 SurA N-terminal domain LUM42_02145 PF04453 LPS transport system D LUM42_02145 PF03968 OstA-like protein LUM42_02150 PF00226 DnaJ domain LUM42_02150 PF05099 Tellurite resistance protein TerB LUM42_02200 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LUM42_02200 PF01464 Transglycosylase SLT domain LUM42_02205 PF04362 Bacterial Fe(2+) trafficking LUM42_02215 PF01497 Periplasmic binding protein LUM42_02220 PF01032 FecCD transport family LUM42_02225 PF00005 ABC transporter LUM42_02230 PF14815 NUDIX domain LUM42_02230 PF00730 HhH-GPD superfamily base excision DNA repair protein LUM42_02235 PF02390 Putative methyltransferase LUM42_02240 PF04960 Glutaminase LUM42_02245 PF06969 HemN C-terminal domain LUM42_02245 PF04055 Radical SAM superfamily LUM42_02250 PF01725 Ham1 family LUM42_02260 PF02594 Uncharacterised ACR, YggU family COG1872 LUM42_02265 PF02325 YGGT family LUM42_02270 PF03807 NADP oxidoreductase coenzyme F420-dependent LUM42_02270 PF14748 Pyrroline-5-carboxylate reductase dimerisation LUM42_02275 PF01168 Alanine racemase, N-terminal domain LUM42_02280 PF00437 Type II/IV secretion system protein LUM42_02285 PF00437 Type II/IV secretion system protein LUM42_02290 PF03652 Holliday junction resolvase LUM42_02295 PF02622 Uncharacterized ACR, COG1678 LUM42_02300 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LUM42_02300 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LUM42_02305 PF04452 RNA methyltransferase LUM42_02310 PF04231 Endonuclease I LUM42_02315 PF10263 SprT-like family LUM42_02315 PF17283 SprT-like zinc ribbon domain LUM42_02325 PF02773 S-adenosylmethionine synthetase, C-terminal domain LUM42_02325 PF02772 S-adenosylmethionine synthetase, central domain LUM42_02325 PF00438 S-adenosylmethionine synthetase, N-terminal domain LUM42_02330 PF02780 Transketolase, C-terminal domain LUM42_02330 PF02779 Transketolase, pyrimidine binding domain LUM42_02330 PF00456 Transketolase, thiamine diphosphate binding domain LUM42_02335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_02335 PF03466 LysR substrate binding domain LUM42_02340 PF07715 TonB-dependent Receptor Plug Domain LUM42_02340 PF00593 TonB dependent receptor LUM42_02345 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LUM42_02345 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LUM42_02350 PF00162 Phosphoglycerate kinase LUM42_02355 PF01116 Fructose-bisphosphate aldolase class-II LUM42_02360 PF05552 Conserved TM helix LUM42_02360 PF00924 Mechanosensitive ion channel LUM42_02370 PF01810 LysE type translocator LUM42_02375 PF03466 LysR substrate binding domain LUM42_02375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_02385 PF00990 Diguanylate cyclase, GGDEF domain LUM42_02390 PF02887 Pyruvate kinase, alpha/beta domain LUM42_02390 PF00224 Pyruvate kinase, barrel domain LUM42_02395 PF00455 DeoR C terminal sensor domain LUM42_02395 PF08220 DeoR-like helix-turn-helix domain LUM42_02400 PF01380 SIS domain LUM42_02415 PF03448 MgtE intracellular N domain LUM42_02415 PF01769 Divalent cation transporter LUM42_02415 PF00571 CBS domain LUM42_02425 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LUM42_02425 PF00356 Bacterial regulatory proteins, lacI family LUM42_02430 PF02378 Phosphotransferase system, EIIC LUM42_02430 PF00367 phosphotransferase system, EIIB LUM42_02435 PF00155 Aminotransferase class I and II LUM42_02445 PF13280 WYL domain LUM42_02445 PF08220 DeoR-like helix-turn-helix domain LUM42_02460 PF00313 'Cold-shock' DNA-binding domain LUM42_02510 PF00140 Sigma-70 factor, region 1.2 LUM42_02510 PF03979 Sigma-70 factor, region 1.1 LUM42_02510 PF04539 Sigma-70 region 3 LUM42_02510 PF04545 Sigma-70, region 4 LUM42_02510 PF04546 Sigma-70, non-essential region LUM42_02510 PF04542 Sigma-70 region 2 LUM42_02515 PF10410 DnaB-helicase binding domain of primase LUM42_02515 PF08275 DNA primase catalytic core, N-terminal domain LUM42_02515 PF01807 CHC2 zinc finger LUM42_02515 PF08278 DNA primase DnaG DnaB-binding LUM42_02520 PF09424 Yqey-like protein LUM42_02525 PF01165 Ribosomal protein S21 LUM42_02530 PF00814 Glycoprotease family LUM42_02535 PF00561 alpha/beta hydrolase fold LUM42_02535 PF00364 Biotin-requiring enzyme LUM42_02540 PF02660 Glycerol-3-phosphate acyltransferase LUM42_02545 PF02152 Dihydroneopterin aldolase LUM42_02550 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LUM42_02555 PF02673 Bacitracin resistance protein BacA LUM42_02560 PF04977 Septum formation initiator LUM42_02565 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LUM42_02570 PF02542 YgbB family LUM42_02575 PF01142 tRNA pseudouridine synthase D (TruD) LUM42_02580 PF01975 Survival protein SurE LUM42_02590 PF01476 LysM domain LUM42_02590 PF01551 Peptidase family M23 LUM42_02595 PF00140 Sigma-70 factor, region 1.2 LUM42_02595 PF04542 Sigma-70 region 2 LUM42_02595 PF04539 Sigma-70 region 3 LUM42_02595 PF04545 Sigma-70, region 4 LUM42_02600 PF00488 MutS domain V LUM42_02600 PF05190 MutS family domain IV LUM42_02600 PF01624 MutS domain I LUM42_02600 PF05188 MutS domain II LUM42_02600 PF05192 MutS domain III LUM42_02605 PF02464 Competence-damaged protein LUM42_02610 PF00154 recA bacterial DNA recombination protein LUM42_02615 PF02631 RecX family LUM42_02620 PF01411 tRNA synthetases class II (A) LUM42_02620 PF02272 DHHA1 domain LUM42_02620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LUM42_02625 PF00696 Amino acid kinase family LUM42_02625 PF01842 ACT domain LUM42_02625 PF13840 ACT domain LUM42_02630 PF02599 Global regulator protein family LUM42_02675 PF04277 Oxaloacetate decarboxylase, gamma chain LUM42_02680 PF00682 HMGL-like LUM42_02680 PF02436 Conserved carboxylase domain LUM42_02680 PF00364 Biotin-requiring enzyme LUM42_02685 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit LUM42_02690 PF08240 Alcohol dehydrogenase GroES-like domain LUM42_02690 PF00107 Zinc-binding dehydrogenase LUM42_02695 PF09335 SNARE associated Golgi protein LUM42_02700 PF00675 Insulinase (Peptidase family M16) LUM42_02700 PF05193 Peptidase M16 inactive domain LUM42_02705 PF04262 Glutamate-cysteine ligase LUM42_02715 PF02664 S-Ribosylhomocysteinase (LuxS) LUM42_02720 PF03471 Transporter associated domain LUM42_02720 PF00571 CBS domain LUM42_02720 PF01595 Cyclin M transmembrane N-terminal domain LUM42_02725 PF01578 Cytochrome C assembly protein LUM42_02730 PF00448 SRP54-type protein, GTPase domain LUM42_02730 PF02881 SRP54-type protein, helical bundle domain LUM42_02730 PF02978 Signal peptide binding domain LUM42_02735 PF00886 Ribosomal protein S16 LUM42_02740 PF05239 PRC-barrel domain LUM42_02740 PF01782 RimM N-terminal domain LUM42_02745 PF01746 tRNA (Guanine-1)-methyltransferase LUM42_02750 PF01245 Ribosomal protein L19 LUM42_02755 PF13180 PDZ domain LUM42_02760 PF00595 PDZ domain LUM42_02765 PF06295 Protein of unknown function (DUF1043) LUM42_02770 PF03969 AFG1-like ATPase LUM42_02775 PF00572 Ribosomal protein L13 LUM42_02780 PF00380 Ribosomal protein S9/S16 LUM42_02785 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LUM42_02785 PF00355 Rieske [2Fe-2S] domain LUM42_02790 PF00033 Cytochrome b/b6/petB LUM42_02790 PF00032 Cytochrome b(C-terminal)/b6/petD LUM42_02795 PF02167 Cytochrome C1 family LUM42_02800 PF00043 Glutathione S-transferase, C-terminal domain LUM42_02800 PF02798 Glutathione S-transferase, N-terminal domain LUM42_02805 PF04386 Stringent starvation protein B LUM42_02810 PF04972 BON domain LUM42_02815 PF13580 SIS domain LUM42_02820 PF02021 Uncharacterised protein family UPF0102 LUM42_02825 PF04348 LppC putative lipoprotein LUM42_02830 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LUM42_02840 PF01795 MraW methylase family LUM42_02845 PF04999 Cell division protein FtsL LUM42_02850 PF03717 Penicillin-binding Protein dimerisation domain LUM42_02850 PF00905 Penicillin binding protein transpeptidase domain LUM42_02855 PF01225 Mur ligase family, catalytic domain LUM42_02855 PF02875 Mur ligase family, glutamate ligase domain LUM42_02855 PF08245 Mur ligase middle domain LUM42_02860 PF02875 Mur ligase family, glutamate ligase domain LUM42_02860 PF08245 Mur ligase middle domain LUM42_02860 PF01225 Mur ligase family, catalytic domain LUM42_02865 PF00953 Glycosyl transferase family 4 LUM42_02865 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LUM42_02870 PF02875 Mur ligase family, glutamate ligase domain LUM42_02870 PF08245 Mur ligase middle domain LUM42_02875 PF01098 Cell cycle protein LUM42_02880 PF03033 Glycosyltransferase family 28 N-terminal domain LUM42_02880 PF04101 Glycosyltransferase family 28 C-terminal domain LUM42_02885 PF08245 Mur ligase middle domain LUM42_02885 PF01225 Mur ligase family, catalytic domain LUM42_02885 PF02875 Mur ligase family, glutamate ligase domain LUM42_02890 PF03799 Cell division protein FtsQ LUM42_02890 PF08478 POTRA domain, FtsQ-type LUM42_02895 PF02491 SHS2 domain inserted in FTSA LUM42_02900 PF00091 Tubulin/FtsZ family, GTPase domain LUM42_02900 PF12327 FtsZ family, C-terminal domain LUM42_02905 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LUM42_02915 PF02810 SEC-C motif LUM42_02915 PF07517 SecA DEAD-like domain LUM42_02915 PF07516 SecA Wing and Scaffold domain LUM42_02915 PF01043 SecA preprotein cross-linking domain LUM42_02920 PF00293 NUDIX domain LUM42_02925 PF05173 Dihydrodipicolinate reductase, C-terminus LUM42_02925 PF01113 Dihydrodipicolinate reductase, N-terminus LUM42_02930 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LUM42_02930 PF00117 Glutamine amidotransferase class-I LUM42_02935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LUM42_02935 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LUM42_02935 PF02142 MGS-like domain LUM42_02945 PF05870 Phenolic acid decarboxylase (PAD) LUM42_02950 PF01925 Sulfite exporter TauE/SafE LUM42_02955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_02955 PF03466 LysR substrate binding domain LUM42_02975 PF03458 UPF0126 domain LUM42_02980 PF01497 Periplasmic binding protein LUM42_02985 PF03186 CobD/Cbib protein LUM42_02985 PF17113 Regulatory signalling modulator protein AmpE LUM42_02990 PF01048 Phosphorylase superfamily LUM42_03000 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LUM42_03000 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_03005 PF00310 Glutamine amidotransferases class-II LUM42_03005 PF04898 Glutamate synthase central domain LUM42_03005 PF01645 Conserved region in glutamate synthase LUM42_03005 PF01493 GXGXG motif LUM42_03010 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LUM42_03010 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_03015 PF00310 Glutamine amidotransferases class-II LUM42_03015 PF04898 Glutamate synthase central domain LUM42_03015 PF01645 Conserved region in glutamate synthase LUM42_03015 PF01493 GXGXG motif LUM42_03020 PF04055 Radical SAM superfamily LUM42_03020 PF16199 Radical_SAM C-terminal domain LUM42_03025 PF01590 GAF domain LUM42_03025 PF00360 Phytochrome region LUM42_03025 PF00990 Diguanylate cyclase, GGDEF domain LUM42_03025 PF00563 EAL domain LUM42_03030 PF00072 Response regulator receiver domain LUM42_03030 PF00989 PAS fold LUM42_03030 PF01627 Hpt domain LUM42_03030 PF18415 Histidine kinase receptor ArcB trans-membrane domain LUM42_03030 PF00512 His Kinase A (phospho-acceptor) domain LUM42_03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_03040 PF00486 Transcriptional regulatory protein, C terminal LUM42_03040 PF00072 Response regulator receiver domain LUM42_03050 PF03737 Aldolase/RraA LUM42_03060 PF01842 ACT domain LUM42_03060 PF03447 Homoserine dehydrogenase, NAD binding domain LUM42_03060 PF00742 Homoserine dehydrogenase LUM42_03060 PF13840 ACT domain LUM42_03060 PF00696 Amino acid kinase family LUM42_03065 PF08544 GHMP kinases C terminal LUM42_03065 PF00288 GHMP kinases N terminal domain LUM42_03070 PF00291 Pyridoxal-phosphate dependent enzyme LUM42_03070 PF14821 Threonine synthase N terminus LUM42_03075 PF01228 Glycine radical LUM42_03080 PF01261 Xylose isomerase-like TIM barrel LUM42_03090 PF03167 Uracil DNA glycosylase superfamily LUM42_03105 PF01235 Sodium:alanine symporter family LUM42_03110 PF03883 Peroxide stress protein YaaA LUM42_03120 PF01026 TatD related DNase LUM42_03125 PF07670 Nucleoside recognition LUM42_03125 PF07662 Na+ dependent nucleoside transporter C-terminus LUM42_03125 PF01773 Na+ dependent nucleoside transporter N-terminus LUM42_03135 PF01791 DeoC/LacD family aldolase LUM42_03140 PF02885 Glycosyl transferase family, helical bundle domain LUM42_03140 PF00591 Glycosyl transferase family, a/b domain LUM42_03140 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LUM42_03145 PF01676 Metalloenzyme superfamily LUM42_03150 PF01048 Phosphorylase superfamily LUM42_03160 PF18429 Domain of unknown function (DUF5609) LUM42_03170 PF18073 Rubredoxin metal binding domain LUM42_03175 PF00679 Elongation factor G C-terminus LUM42_03175 PF14492 Elongation Factor G, domain II LUM42_03175 PF03764 Elongation factor G, domain IV LUM42_03175 PF00009 Elongation factor Tu GTP binding domain LUM42_03175 PF03144 Elongation factor Tu domain 2 LUM42_03180 PF03466 LysR substrate binding domain LUM42_03180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_03190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_03190 PF03466 LysR substrate binding domain LUM42_03195 PF00501 AMP-binding enzyme LUM42_03230 PF04972 BON domain LUM42_03230 PF00263 Bacterial type II and III secretion system protein LUM42_03230 PF13629 Pilus formation protein N terminal region LUM42_03260 PF00437 Type II/IV secretion system protein LUM42_03280 PF00072 Response regulator receiver domain LUM42_03285 PF02417 Chromate transporter LUM42_03290 PF01263 Aldose 1-epimerase LUM42_03295 PF01588 Putative tRNA binding domain LUM42_03305 PF01544 CorA-like Mg2+ transporter protein LUM42_03315 PF00583 Acetyltransferase (GNAT) family LUM42_03325 PF00962 Adenosine/AMP deaminase LUM42_03330 PF14602 Hexapeptide repeat of succinyl-transferase LUM42_03330 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle LUM42_03335 PF07130 YebG protein LUM42_03340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_03340 PF03466 LysR substrate binding domain LUM42_03350 PF17946 RecC C-terminal domain LUM42_03355 PF12705 PD-(D/E)XK nuclease superfamily LUM42_03355 PF00580 UvrD/REP helicase N-terminal domain LUM42_03355 PF13361 UvrD-like helicase C-terminal domain LUM42_03360 PF13538 UvrD-like helicase C-terminal domain LUM42_03370 PF00696 Amino acid kinase family LUM42_03370 PF00583 Acetyltransferase (GNAT) family LUM42_03380 PF06725 3D domain LUM42_03380 PF03562 MltA specific insert domain LUM42_03385 PF00899 ThiF family LUM42_03390 PF02657 Fe-S metabolism associated domain LUM42_03395 PF00266 Aminotransferase class-V LUM42_03400 PF01965 DJ-1/PfpI family LUM42_03405 PF02558 Ketopantoate reductase PanE/ApbA LUM42_03405 PF08546 Ketopantoate reductase PanE/ApbA C terminal LUM42_03410 PF03502 Nucleoside-specific channel-forming protein, Tsx LUM42_03420 PF04545 Sigma-70, region 4 LUM42_03420 PF04542 Sigma-70 region 2 LUM42_03430 PF07690 Major Facilitator Superfamily LUM42_03435 PF12838 4Fe-4S dicluster domain LUM42_03440 PF01136 Peptidase family U32 LUM42_03440 PF16325 Peptidase family U32 C-terminal domain LUM42_03445 PF04381 Putative exonuclease, RdgC LUM42_03450 PF00072 Response regulator receiver domain LUM42_03450 PF00486 Transcriptional regulatory protein, C terminal LUM42_03455 PF11808 Phosphate regulon sensor protein PhoR LUM42_03455 PF00512 His Kinase A (phospho-acceptor) domain LUM42_03455 PF00989 PAS fold LUM42_03455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_03460 PF12849 PBP superfamily domain LUM42_03465 PF02541 Ppx/GppA phosphatase family LUM42_03470 PF02503 Polyphosphate kinase middle domain LUM42_03470 PF13090 Polyphosphate kinase C-terminal domain 2 LUM42_03470 PF17941 Polyphosphate kinase C-terminal domain 1 LUM42_03470 PF13089 Polyphosphate kinase N-terminal domain LUM42_03475 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_03480 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_03485 PF00005 ABC transporter LUM42_03490 PF01895 PhoU domain LUM42_03495 PF03976 Polyphosphate kinase 2 (PPK2) LUM42_03500 PF03932 CutC family LUM42_03505 PF10417 C-terminal domain of 1-Cys peroxiredoxin LUM42_03505 PF00578 AhpC/TSA family LUM42_03510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_03510 PF03466 LysR substrate binding domain LUM42_03515 PF01274 Malate synthase LUM42_03520 PF00463 Isocitrate lyase family LUM42_03525 PF00672 HAMP domain LUM42_03525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_03530 PF00571 CBS domain LUM42_03535 PF02547 Queuosine biosynthesis protein LUM42_03540 PF01702 Queuine tRNA-ribosyltransferase LUM42_03545 PF02699 Preprotein translocase subunit LUM42_03550 PF02355 Protein export membrane protein LUM42_03550 PF07549 SecD/SecF GG Motif LUM42_03550 PF13721 SecD export protein N-terminal TM region LUM42_03555 PF07549 SecD/SecF GG Motif LUM42_03555 PF02355 Protein export membrane protein LUM42_03560 PF00857 Isochorismatase family LUM42_03565 PF00459 Inositol monophosphatase family LUM42_03570 PF00588 SpoU rRNA Methylase family LUM42_03575 PF02082 Transcriptional regulator LUM42_03580 PF00266 Aminotransferase class-V LUM42_03585 PF01592 NifU-like N terminal domain LUM42_03590 PF01521 Iron-sulphur cluster biosynthesis LUM42_03595 PF07743 HSCB C-terminal oligomerisation domain LUM42_03595 PF00226 DnaJ domain LUM42_03600 PF00012 Hsp70 protein LUM42_03605 PF00111 2Fe-2S iron-sulfur cluster binding domain LUM42_03610 PF04384 Iron-sulphur cluster assembly LUM42_03615 PF12404 Peptidase LUM42_03615 PF00883 Cytosol aminopeptidase family, catalytic domain LUM42_03620 PF00334 Nucleoside diphosphate kinase LUM42_03625 PF04055 Radical SAM superfamily LUM42_03630 PF13464 Domain of unknown function (DUF4115) LUM42_03635 PF04551 GcpE protein LUM42_03640 PF13393 Histidyl-tRNA synthetase LUM42_03640 PF03129 Anticodon binding domain LUM42_03645 PF09976 Tetratricopeptide repeat-like domain LUM42_03650 PF13360 PQQ-like domain LUM42_03655 PF01926 50S ribosome-binding GTPase LUM42_03655 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LUM42_03670 PF02601 Exonuclease VII, large subunit LUM42_03670 PF13742 OB-fold nucleic acid binding domain LUM42_03675 PF00571 CBS domain LUM42_03675 PF00478 IMP dehydrogenase / GMP reductase domain LUM42_03680 PF00958 GMP synthase C terminal domain LUM42_03680 PF02540 NAD synthase LUM42_03680 PF00117 Glutamine amidotransferase class-I LUM42_03685 PF06483 Chitinase C LUM42_03685 PF00704 Glycosyl hydrolases family 18 LUM42_03690 PF01184 GPR1/FUN34/yaaH family LUM42_03700 PF00486 Transcriptional regulatory protein, C terminal LUM42_03705 PF00419 Fimbrial protein LUM42_03710 PF00577 Outer membrane usher protein LUM42_03710 PF13954 PapC N-terminal domain LUM42_03710 PF13953 PapC C-terminal domain LUM42_03715 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LUM42_03715 PF02753 Pili assembly chaperone PapD, C-terminal domain LUM42_03730 PF01758 Sodium Bile acid symporter family LUM42_03735 PF01235 Sodium:alanine symporter family LUM42_03745 PF01266 FAD dependent oxidoreductase LUM42_03750 PF03466 LysR substrate binding domain LUM42_03750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_03755 PF02384 N-6 DNA Methylase LUM42_03785 PF01668 SmpB protein LUM42_03790 PF03364 Polyketide cyclase / dehydrase and lipid transport LUM42_03795 PF03658 RnfH family Ubiquitin LUM42_03800 PF04355 SmpA / OmlA family LUM42_03805 PF02463 RecF/RecN/SMC N terminal domain LUM42_03810 PF01513 ATP-NAD kinase LUM42_03815 PF01025 GrpE LUM42_03820 PF00375 Sodium:dicarboxylate symporter family LUM42_03825 PF00012 Hsp70 protein LUM42_03830 PF00684 DnaJ central domain LUM42_03830 PF01556 DnaJ C terminal domain LUM42_03830 PF00226 DnaJ domain LUM42_03840 PF00114 Pilin (bacterial filament) LUM42_03840 PF07963 Prokaryotic N-terminal methylation motif LUM42_03860 PF03806 AbgT putative transporter family LUM42_03865 PF00756 Putative esterase LUM42_03870 PF08240 Alcohol dehydrogenase GroES-like domain LUM42_03870 PF00107 Zinc-binding dehydrogenase LUM42_03875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_03875 PF03466 LysR substrate binding domain LUM42_03880 PF14437 MafB19-like deaminase LUM42_03885 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_03885 PF01464 Transglycosylase SLT domain LUM42_03890 PF02769 AIR synthase related protein, C-terminal domain LUM42_03890 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LUM42_03890 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LUM42_03895 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LUM42_03895 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LUM42_03895 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_03905 PF06786 Uncharacterised protein family (UPF0253) LUM42_03915 PF03129 Anticodon binding domain LUM42_03915 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LUM42_03915 PF04073 Aminoacyl-tRNA editing domain LUM42_03920 PF01980 tRNA-methyltransferase O LUM42_03920 PF18389 TrmO C-terminal domain LUM42_03925 PF01197 Ribosomal protein L31 LUM42_03930 PF00444 Ribosomal protein L36 LUM42_03935 PF03806 AbgT putative transporter family LUM42_03940 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LUM42_03965 PF04287 tRNA pseudouridine synthase C LUM42_03970 PF00849 RNA pseudouridylate synthase LUM42_03975 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LUM42_03975 PF02780 Transketolase, C-terminal domain LUM42_03975 PF02779 Transketolase, pyrimidine binding domain LUM42_03980 PF00348 Polyprenyl synthetase LUM42_03985 PF02609 Exonuclease VII small subunit LUM42_03990 PF01618 MotA/TolQ/ExbB proton channel family LUM42_03995 PF00691 OmpA family LUM42_03995 PF13677 Membrane MotB of proton-channel complex MotA/MotB LUM42_04000 PF02568 Thiamine biosynthesis protein (ThiI) LUM42_04000 PF02926 THUMP domain LUM42_04005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_04005 PF03466 LysR substrate binding domain LUM42_04015 PF04241 Protein of unknown function (DUF423) LUM42_04020 PF01728 FtsJ-like methyltransferase LUM42_04020 PF18125 RlmM ferredoxin-like domain LUM42_04025 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LUM42_04025 PF01367 5'-3' exonuclease, C-terminal SAM fold LUM42_04030 PF11892 Domain of unknown function (DUF3412) LUM42_04030 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LUM42_04030 PF03641 Possible lysine decarboxylase LUM42_04035 PF00990 Diguanylate cyclase, GGDEF domain LUM42_04045 PF14489 QueF-like protein LUM42_04045 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LUM42_04050 PF07348 Syd protein (SUKH-2) LUM42_04055 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) LUM42_04060 PF03180 NLPA lipoprotein LUM42_04065 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_04070 PF00005 ABC transporter LUM42_04070 PF09383 NIL domain LUM42_04085 PF00356 Bacterial regulatory proteins, lacI family LUM42_04090 PF00367 phosphotransferase system, EIIB LUM42_04090 PF02378 Phosphotransferase system, EIIC LUM42_04095 PF00128 Alpha amylase, catalytic domain LUM42_04095 PF16657 Maltogenic Amylase, C-terminal domain LUM42_04100 PF07690 Major Facilitator Superfamily LUM42_04105 PF05231 MASE1 LUM42_04105 PF07730 Histidine kinase LUM42_04105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_04110 PF00196 Bacterial regulatory proteins, luxR family LUM42_04110 PF00072 Response regulator receiver domain LUM42_04115 PF07690 Major Facilitator Superfamily LUM42_04140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_04145 PF00873 AcrB/AcrD/AcrF family LUM42_04155 PF00464 Serine hydroxymethyltransferase LUM42_04165 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LUM42_04165 PF04055 Radical SAM superfamily LUM42_04170 PF03099 Biotin/lipoate A/B protein ligase family LUM42_04175 PF04359 Protein of unknown function (DUF493) LUM42_04180 PF07943 Penicillin-binding protein 5, C-terminal domain LUM42_04180 PF00768 D-alanyl-D-alanine carboxypeptidase LUM42_04185 PF03330 Lytic transglycolase LUM42_04185 PF05036 Sporulation related domain LUM42_04190 PF01098 Cell cycle protein LUM42_04195 PF03717 Penicillin-binding Protein dimerisation domain LUM42_04195 PF00905 Penicillin binding protein transpeptidase domain LUM42_04200 PF02590 Predicted SPOUT methyltransferase LUM42_04210 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LUM42_04210 PF06144 DNA polymerase III, delta subunit LUM42_04215 PF04390 Lipopolysaccharide-assembly LUM42_04220 PF13603 Leucyl-tRNA synthetase, Domain 2 LUM42_04220 PF00133 tRNA synthetases class I (I, L, M and V) LUM42_04220 PF08264 Anticodon-binding domain of tRNA LUM42_04225 PF07295 Zinc-ribbon containing domain LUM42_04230 PF00795 Carbon-nitrogen hydrolase LUM42_04235 PF00571 CBS domain LUM42_04235 PF03471 Transporter associated domain LUM42_04240 PF02130 Uncharacterized protein family UPF0054 LUM42_04245 PF02562 PhoH-like protein LUM42_04250 PF04055 Radical SAM superfamily LUM42_04250 PF01938 TRAM domain LUM42_04250 PF00919 Uncharacterized protein family UPF0004 LUM42_04255 PF01494 FAD binding domain LUM42_04260 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LUM42_04265 PF00391 PEP-utilising enzyme, mobile domain LUM42_04265 PF02896 PEP-utilising enzyme, TIM barrel domain LUM42_04265 PF05524 PEP-utilising enzyme, N-terminal LUM42_04270 PF00381 PTS HPr component phosphorylation site LUM42_04275 PF00291 Pyridoxal-phosphate dependent enzyme LUM42_04285 PF04354 ZipA, C-terminal FtsZ-binding domain LUM42_04290 PF00533 BRCA1 C Terminus (BRCT) domain LUM42_04290 PF01653 NAD-dependent DNA ligase adenylation domain LUM42_04290 PF03120 NAD-dependent DNA ligase OB-fold domain LUM42_04290 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LUM42_04290 PF12826 Helix-hairpin-helix motif LUM42_04295 PF13609 Gram-negative porin LUM42_04305 PF13411 MerR HTH family regulatory protein LUM42_04315 PF01145 SPFH domain / Band 7 family LUM42_04315 PF16200 C-terminal region of band_7 LUM42_04320 PF00085 Thioredoxin LUM42_04325 PF00106 short chain dehydrogenase LUM42_04330 PF08338 Domain of unknown function (DUF1731) LUM42_04330 PF01370 NAD dependent epimerase/dehydratase family LUM42_04335 PF07556 Protein of unknown function (DUF1538) LUM42_04340 PF07556 Protein of unknown function (DUF1538) LUM42_04355 PF12850 Calcineurin-like phosphoesterase superfamily domain LUM42_04365 PF17323 Trans-membrane regulatory protein ToxS LUM42_04370 PF00486 Transcriptional regulatory protein, C terminal LUM42_04380 PF05191 Adenylate kinase, active site lid LUM42_04385 PF00762 Ferrochelatase LUM42_04390 PF00854 POT family LUM42_04395 PF02357 Transcription termination factor nusG LUM42_04400 PF00733 Asparagine synthase LUM42_04400 PF13537 Glutamine amidotransferase domain LUM42_04405 PF02254 TrkA-N domain LUM42_04405 PF00999 Sodium/hydrogen exchanger family LUM42_04410 PF00480 ROK family LUM42_04410 PF01047 MarR family LUM42_04415 PF01979 Amidohydrolase family LUM42_04420 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LUM42_04420 PF00367 phosphotransferase system, EIIB LUM42_04420 PF02378 Phosphotransferase system, EIIC LUM42_04425 PF00749 tRNA synthetases class I (E and Q), catalytic domain LUM42_04425 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LUM42_04435 PF01416 tRNA pseudouridine synthase LUM42_04440 PF01039 Carboxyl transferase domain LUM42_04440 PF17848 Acetyl-coA carboxylase zinc finger domain LUM42_04445 PF02875 Mur ligase family, glutamate ligase domain LUM42_04445 PF08245 Mur ligase middle domain LUM42_04450 PF05036 Sporulation related domain LUM42_04455 PF02674 Colicin V production protein LUM42_04460 PF00156 Phosphoribosyl transferase domain LUM42_04465 PF03553 Na+/H+ antiporter family LUM42_04465 PF13726 Na+-H+ antiporter family LUM42_04470 PF00929 Exonuclease LUM42_04475 PF18393 MotY N-terminal domain LUM42_04475 PF00691 OmpA family LUM42_04480 PF10952 Protein of unknown function (DUF2753) LUM42_04485 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LUM42_04490 PF00730 HhH-GPD superfamily base excision DNA repair protein LUM42_04490 PF00633 Helix-hairpin-helix motif LUM42_04490 PF10576 Iron-sulfur binding domain of endonuclease III LUM42_04495 PF02508 Rnf-Nqr subunit, membrane protein LUM42_04500 PF04205 FMN-binding domain LUM42_04505 PF03116 NQR2, RnfD, RnfE family LUM42_04510 PF12838 4Fe-4S dicluster domain LUM42_04510 PF13375 RnfC Barrel sandwich hybrid domain LUM42_04510 PF10531 SLBB domain LUM42_04510 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LUM42_04515 PF04060 Putative Fe-S cluster LUM42_04520 PF02508 Rnf-Nqr subunit, membrane protein LUM42_04525 PF02901 Pyruvate formate lyase-like LUM42_04525 PF01228 Glycine radical LUM42_04535 PF04851 Type III restriction enzyme, res subunit LUM42_04535 PF02151 UvrB/uvrC motif LUM42_04535 PF12344 Ultra-violet resistance protein B LUM42_04535 PF17757 UvrB interaction domain LUM42_04535 PF00271 Helicase conserved C-terminal domain LUM42_04540 PF02954 Bacterial regulatory protein, Fis family LUM42_04540 PF00072 Response regulator receiver domain LUM42_04540 PF00158 Sigma-54 interaction domain LUM42_04545 PF01627 Hpt domain LUM42_04550 PF01933 Uncharacterised protein family UPF0052 LUM42_04555 PF06463 Molybdenum Cofactor Synthesis C LUM42_04555 PF04055 Radical SAM superfamily LUM42_04560 PF00994 Probable molybdopterin binding domain LUM42_04565 PF01967 MoaC family LUM42_04570 PF02597 ThiS family LUM42_04575 PF02391 MoaE protein LUM42_04580 PF00990 Diguanylate cyclase, GGDEF domain LUM42_04580 PF08448 PAS fold LUM42_04585 PF00571 CBS domain LUM42_04585 PF01368 DHH family LUM42_04585 PF02272 DHHA1 domain LUM42_04585 PF01743 Poly A polymerase head domain LUM42_04590 PF00403 Heavy-metal-associated domain LUM42_04595 PF01048 Phosphorylase superfamily LUM42_04605 PF01588 Putative tRNA binding domain LUM42_04605 PF09334 tRNA synthetases class I (M) LUM42_04610 PF10609 NUBPL iron-transfer P-loop NTPase LUM42_04615 PF00485 Phosphoribulokinase / Uridine kinase family LUM42_04620 PF05170 AsmA family LUM42_04625 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LUM42_04625 PF12557 Cob(I)alamin adenosyltransferase N terminal LUM42_04630 PF13426 PAS domain LUM42_04630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_04630 PF08447 PAS fold LUM42_04645 PF01451 Low molecular weight phosphotyrosine protein phosphatase LUM42_04650 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LUM42_04655 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LUM42_04665 PF04542 Sigma-70 region 2 LUM42_04665 PF08281 Sigma-70, region 4 LUM42_04670 PF00108 Thiolase, N-terminal domain LUM42_04670 PF02803 Thiolase, C-terminal domain LUM42_04675 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LUM42_04675 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LUM42_04675 PF00378 Enoyl-CoA hydratase/isomerase LUM42_04680 PF00881 Nitroreductase family LUM42_04685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_04685 PF03466 LysR substrate binding domain LUM42_04690 PF00072 Response regulator receiver domain LUM42_04695 PF04304 Protein of unknown function (DUF454) LUM42_04700 PF00156 Phosphoribosyl transferase domain LUM42_04705 PF12169 DNA polymerase III subunits gamma and tau domain III LUM42_04705 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LUM42_04705 PF12170 DNA polymerase III tau subunit V interacting with alpha LUM42_04710 PF02575 YbaB/EbfC DNA-binding family LUM42_04715 PF02132 RecR protein LUM42_04715 PF13662 Toprim domain LUM42_04720 PF00230 Major intrinsic protein LUM42_04725 PF03692 Putative zinc- or iron-chelating domain LUM42_04730 PF03692 Putative zinc- or iron-chelating domain LUM42_04745 PF13847 Methyltransferase domain LUM42_04750 PF01263 Aldose 1-epimerase LUM42_04755 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LUM42_04755 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LUM42_04760 PF01641 SelR domain LUM42_04770 PF07023 Protein of unknown function (DUF1315) LUM42_04775 PF00710 Asparaginase, N-terminal LUM42_04775 PF17763 Glutaminase/Asparaginase C-terminal domain LUM42_04780 PF01343 Peptidase family S49 LUM42_04785 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LUM42_04785 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_04790 PF01842 ACT domain LUM42_04790 PF00551 Formyl transferase LUM42_04800 PF13307 Helicase C-terminal domain LUM42_04800 PF04851 Type III restriction enzyme, res subunit LUM42_04805 PF00814 Glycoprotease family LUM42_04820 PF00561 alpha/beta hydrolase fold LUM42_04825 PF13193 AMP-binding enzyme C-terminal domain LUM42_04825 PF00501 AMP-binding enzyme LUM42_04830 PF01612 3'-5' exonuclease LUM42_04830 PF00570 HRDC domain LUM42_04840 PF03776 Septum formation topological specificity factor MinE LUM42_04845 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LUM42_04850 PF03775 Septum formation inhibitor MinC, C-terminal domain LUM42_04850 PF05209 Septum formation inhibitor MinC, N-terminal domain LUM42_04855 PF05166 YcgL domain LUM42_04860 PF13406 Transglycosylase SLT domain LUM42_04865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_04865 PF03466 LysR substrate binding domain LUM42_04870 PF01773 Na+ dependent nucleoside transporter N-terminus LUM42_04870 PF07662 Na+ dependent nucleoside transporter C-terminus LUM42_04870 PF07670 Nucleoside recognition LUM42_04875 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LUM42_04875 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LUM42_04890 PF07470 Glycosyl Hydrolase Family 88 LUM42_04895 PF01306 LacY proton/sugar symporter LUM42_04905 PF12833 Helix-turn-helix domain LUM42_04930 PF00970 Oxidoreductase FAD-binding domain LUM42_04930 PF00175 Oxidoreductase NAD-binding domain LUM42_04950 PF00563 EAL domain LUM42_04950 PF00990 Diguanylate cyclase, GGDEF domain LUM42_04950 PF03707 Bacterial signalling protein N terminal repeat LUM42_04960 PF00583 Acetyltransferase (GNAT) family LUM42_04960 PF00795 Carbon-nitrogen hydrolase LUM42_04970 PF03313 Serine dehydratase alpha chain LUM42_04970 PF03315 Serine dehydratase beta chain LUM42_04975 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LUM42_04980 PF00072 Response regulator receiver domain LUM42_04980 PF00486 Transcriptional regulatory protein, C terminal LUM42_04985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_04985 PF00512 His Kinase A (phospho-acceptor) domain LUM42_04985 PF00672 HAMP domain LUM42_04990 PF01547 Bacterial extracellular solute-binding protein LUM42_04995 PF00082 Subtilase family LUM42_04995 PF05922 Peptidase inhibitor I9 LUM42_04995 PF04151 Bacterial pre-peptidase C-terminal domain LUM42_05000 PF03480 Bacterial extracellular solute-binding protein, family 7 LUM42_05005 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LUM42_05010 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LUM42_05015 PF02954 Bacterial regulatory protein, Fis family LUM42_05015 PF00072 Response regulator receiver domain LUM42_05015 PF00158 Sigma-54 interaction domain LUM42_05020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_05020 PF00512 His Kinase A (phospho-acceptor) domain LUM42_05030 PF05697 Bacterial trigger factor protein (TF) LUM42_05030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LUM42_05030 PF05698 Bacterial trigger factor protein (TF) C-terminus LUM42_05035 PF00574 Clp protease LUM42_05040 PF07724 AAA domain (Cdc48 subfamily) LUM42_05040 PF10431 C-terminal, D2-small domain, of ClpB protein LUM42_05040 PF06689 ClpX C4-type zinc finger LUM42_05045 PF00004 ATPase family associated with various cellular activities (AAA) LUM42_05045 PF05362 Lon protease (S16) C-terminal proteolytic domain LUM42_05045 PF02190 ATP-dependent protease La (LON) substrate-binding domain LUM42_05050 PF00216 Bacterial DNA-binding protein LUM42_05055 PF13145 PPIC-type PPIASE domain LUM42_05065 PF02224 Cytidylate kinase LUM42_05070 PF00575 S1 RNA binding domain LUM42_05075 PF00216 Bacterial DNA-binding protein LUM42_05080 PF06305 Lipopolysaccharide assembly protein A domain LUM42_05085 PF18073 Rubredoxin metal binding domain LUM42_05090 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LUM42_05095 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LUM42_05105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_05105 PF03466 LysR substrate binding domain LUM42_05115 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LUM42_05115 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LUM42_05120 PF01037 Lrp/AsnC ligand binding domain LUM42_05125 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LUM42_05125 PF17854 FtsK alpha domain LUM42_05125 PF09397 Ftsk gamma domain LUM42_05125 PF01580 FtsK/SpoIIIE family LUM42_05130 PF02600 Disulfide bond formation protein DsbB LUM42_05135 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LUM42_05140 PF00392 Bacterial regulatory proteins, gntR family LUM42_05140 PF07840 FadR C-terminal domain LUM42_05150 PF00672 HAMP domain LUM42_05150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_05155 PF01230 HIT domain LUM42_05170 PF13036 Peptidoglycan-synthase activator LpoB LUM42_05170 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LUM42_05180 PF05728 Uncharacterised protein family (UPF0227) LUM42_05185 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_05190 PF13302 Acetyltransferase (GNAT) domain LUM42_05200 PF02559 CarD-like/TRCF domain LUM42_05200 PF00270 DEAD/DEAH box helicase LUM42_05200 PF00271 Helicase conserved C-terminal domain LUM42_05200 PF03461 TRCF domain LUM42_05200 PF17757 UvrB interaction domain LUM42_05210 PF02687 FtsX-like permease family LUM42_05210 PF12704 MacB-like periplasmic core domain LUM42_05215 PF00005 ABC transporter LUM42_05220 PF02687 FtsX-like permease family LUM42_05220 PF12704 MacB-like periplasmic core domain LUM42_05230 PF00753 Metallo-beta-lactamase superfamily LUM42_05230 PF13567 Domain of unknown function (DUF4131) LUM42_05230 PF03772 Competence protein LUM42_05235 PF00664 ABC transporter transmembrane region LUM42_05235 PF00005 ABC transporter LUM42_05240 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LUM42_05245 PF03966 Trm112p-like protein LUM42_05250 PF02348 Cytidylyltransferase LUM42_05255 PF04293 SpoVR like protein LUM42_05260 PF04285 Protein of unknown function (DUF444) LUM42_05265 PF08298 PrkA AAA domain LUM42_05265 PF06798 PrkA serine protein kinase C-terminal domain LUM42_05270 PF06629 MltA-interacting protein MipA LUM42_05275 PF03887 YfbU domain LUM42_05285 PF04055 Radical SAM superfamily LUM42_05290 PF00672 HAMP domain LUM42_05290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_05300 PF02901 Pyruvate formate lyase-like LUM42_05300 PF01228 Glycine radical LUM42_05310 PF00005 ABC transporter LUM42_05315 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_05320 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_05325 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_05330 PF03372 Endonuclease/Exonuclease/phosphatase family LUM42_05335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_05335 PF00672 HAMP domain LUM42_05340 PF10689 Protein of unknown function (DUF2496) LUM42_05345 PF07445 Primosomal replication protein priC LUM42_05350 PF06733 DEAD_2 LUM42_05350 PF13307 Helicase C-terminal domain LUM42_05355 PF13609 Gram-negative porin LUM42_05360 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LUM42_05365 PF02810 SEC-C motif LUM42_05370 PF00563 EAL domain LUM42_05370 PF08668 HDOD domain LUM42_05375 PF00149 Calcineurin-like phosphoesterase LUM42_05380 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LUM42_05385 PF01406 tRNA synthetases class I (C) catalytic domain LUM42_05385 PF09190 DALR domain LUM42_05390 PF02075 Crossover junction endodeoxyribonuclease RuvC LUM42_05395 PF07499 RuvA, C-terminal domain LUM42_05395 PF01330 RuvA N terminal domain LUM42_05400 PF17864 RuvB AAA lid domain LUM42_05400 PF05491 RuvB C-terminal winged helix domain LUM42_05400 PF05496 Holliday junction DNA helicase RuvB P-loop domain LUM42_05405 PF01654 Cytochrome bd terminal oxidase subunit I LUM42_05410 PF02322 Cytochrome bd terminal oxidase subunit II LUM42_05415 PF08173 Membrane bound YbgT-like protein LUM42_05425 PF03061 Thioesterase superfamily LUM42_05430 PF01618 MotA/TolQ/ExbB proton channel family LUM42_05435 PF02472 Biopolymer transport protein ExbD/TolR LUM42_05445 PF04052 TolB amino-terminal domain LUM42_05445 PF07676 WD40-like Beta Propeller Repeat LUM42_05450 PF00691 OmpA family LUM42_05455 PF16331 TolA binding protein trimerisation LUM42_05455 PF13174 Tetratricopeptide repeat LUM42_05460 PF02445 Quinolinate synthetase A protein LUM42_05470 PF09308 LuxQ, periplasmic LUM42_05470 PF00072 Response regulator receiver domain LUM42_05470 PF00512 His Kinase A (phospho-acceptor) domain LUM42_05470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_05475 PF06610 L-alanine exporter LUM42_05495 PF07670 Nucleoside recognition LUM42_05500 PF07670 Nucleoside recognition LUM42_05505 PF07687 Peptidase dimerisation domain LUM42_05505 PF01546 Peptidase family M20/M25/M40 LUM42_05510 PF00171 Aldehyde dehydrogenase family LUM42_05525 PF16295 Tetracyclin repressor-like, C-terminal domain LUM42_05525 PF00440 Bacterial regulatory proteins, tetR family LUM42_05530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LUM42_05530 PF02770 Acyl-CoA dehydrogenase, middle domain LUM42_05530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LUM42_05530 PF09317 Domain of unknown function (DUF1974) LUM42_05535 PF07055 Enoyl reductase FAD binding domain LUM42_05535 PF12241 Trans-2-enoyl-CoA reductase catalytic region LUM42_05535 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LUM42_05540 PF02080 TrkA-C domain LUM42_05540 PF06826 Predicted Permease Membrane Region LUM42_05545 PF00462 Glutaredoxin LUM42_05550 PF00465 Iron-containing alcohol dehydrogenase LUM42_05555 PF01380 SIS domain LUM42_05555 PF01418 Helix-turn-helix domain, rpiR family LUM42_05560 PF00282 Pyridoxal-dependent decarboxylase conserved domain LUM42_05570 PF03956 Lysine exporter LysO LUM42_05580 PF04993 TfoX N-terminal domain LUM42_05580 PF04994 TfoX C-terminal domain LUM42_05595 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_05595 PF00512 His Kinase A (phospho-acceptor) domain LUM42_05595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_05605 PF00266 Aminotransferase class-V LUM42_05610 PF00890 FAD binding domain LUM42_05620 PF14602 Hexapeptide repeat of succinyl-transferase LUM42_05620 PF00132 Bacterial transferase hexapeptide (six repeats) LUM42_05620 PF12464 Maltose acetyltransferase LUM42_05625 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain LUM42_05625 PF04616 Glycosyl hydrolases family 43 LUM42_05635 PF11842 Domain of unknown function (DUF3362) LUM42_05635 PF04055 Radical SAM superfamily LUM42_05635 PF08497 Radical SAM N-terminal LUM42_05640 PF00005 ABC transporter LUM42_05640 PF12848 ABC transporter LUM42_05645 PF03358 NADPH-dependent FMN reductase LUM42_05650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LUM42_05655 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LUM42_05655 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_05660 PF00106 short chain dehydrogenase LUM42_05670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_05670 PF03466 LysR substrate binding domain LUM42_05680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_05680 PF00672 HAMP domain LUM42_05680 PF12729 Four helix bundle sensory module for signal transduction LUM42_05685 PF00563 EAL domain LUM42_05685 PF00196 Bacterial regulatory proteins, luxR family LUM42_05700 PF00675 Insulinase (Peptidase family M16) LUM42_05700 PF05193 Peptidase M16 inactive domain LUM42_05715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_05715 PF03466 LysR substrate binding domain LUM42_05720 PF06406 StbA protein LUM42_05730 PF01312 FlhB HrpN YscU SpaS Family LUM42_05735 PF01311 Bacterial export proteins, family 1 LUM42_05740 PF01313 Bacterial export proteins, family 3 LUM42_05745 PF00813 FliP family LUM42_05750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LUM42_05760 PF00460 Flagella basal body rod protein LUM42_05765 PF00460 Flagella basal body rod protein LUM42_05765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_05770 PF13861 FlgD Tudor-like domain LUM42_05770 PF03963 Flagellar hook capping protein - N-terminal region LUM42_05770 PF13860 FlgD Ig-like domain LUM42_05775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_05775 PF00460 Flagella basal body rod protein LUM42_05775 PF07559 Flagellar basal body protein FlaE LUM42_05780 PF00460 Flagella basal body rod protein LUM42_05780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_05785 PF00460 Flagella basal body rod protein LUM42_05785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_05790 PF02107 Flagellar L-ring protein LUM42_05795 PF02119 Flagellar P-ring protein LUM42_05820 PF02049 Flagellar hook-basal body complex protein FliE LUM42_05825 PF01514 Secretory protein of YscJ/FliF family LUM42_05825 PF08345 Flagellar M-ring protein C-terminal LUM42_05830 PF01706 FliG C-terminal domain LUM42_05830 PF14841 FliG middle domain LUM42_05830 PF14842 FliG N-terminal domain LUM42_05855 PF00771 FHIPEP family LUM42_05860 PF00700 Bacterial flagellin C-terminal helical region LUM42_05860 PF00669 Bacterial flagellin N-terminal helical region LUM42_05865 PF00700 Bacterial flagellin C-terminal helical region LUM42_05865 PF00669 Bacterial flagellin N-terminal helical region LUM42_05870 PF00700 Bacterial flagellin C-terminal helical region LUM42_05870 PF00669 Bacterial flagellin N-terminal helical region LUM42_05875 PF07196 Flagellin hook IN motif LUM42_05875 PF07195 Flagellar hook-associated protein 2 C-terminus LUM42_05875 PF02465 Flagellar hook-associated protein 2 N-terminus LUM42_05900 PF04542 Sigma-70 region 2 LUM42_05900 PF04539 Sigma-70 region 3 LUM42_05900 PF04545 Sigma-70, region 4 LUM42_05905 PF01618 MotA/TolQ/ExbB proton channel family LUM42_05910 PF13677 Membrane MotB of proton-channel complex MotA/MotB LUM42_05910 PF00691 OmpA family LUM42_05920 PF08267 Cobalamin-independent synthase, N-terminal domain LUM42_05920 PF01717 Cobalamin-independent synthase, Catalytic domain LUM42_05925 PF00672 HAMP domain LUM42_05925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_05925 PF02743 Cache domain LUM42_05935 PF03795 YCII-related domain LUM42_05940 PF03061 Thioesterase superfamily LUM42_05945 PF04279 Intracellular septation protein A LUM42_05950 PF00375 Sodium:dicarboxylate symporter family LUM42_05955 PF00290 Tryptophan synthase alpha chain LUM42_05960 PF00291 Pyridoxal-phosphate dependent enzyme LUM42_05965 PF00218 Indole-3-glycerol phosphate synthase LUM42_05965 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LUM42_05970 PF00591 Glycosyl transferase family, a/b domain LUM42_05970 PF02885 Glycosyl transferase family, helical bundle domain LUM42_05975 PF00117 Glutamine amidotransferase class-I LUM42_05980 PF04715 Anthranilate synthase component I, N terminal region LUM42_05980 PF00425 chorismate binding enzyme LUM42_05990 PF02811 PHP domain LUM42_05995 PF02685 Glucokinase LUM42_05995 PF01380 SIS domain LUM42_05995 PF01418 Helix-turn-helix domain, rpiR family LUM42_06005 PF07969 Amidohydrolase family LUM42_06015 PF00474 Sodium:solute symporter family LUM42_06020 PF00294 pfkB family carbohydrate kinase LUM42_06025 PF01081 KDPG and KHG aldolase LUM42_06035 PF01300 Telomere recombination LUM42_06040 PF00849 RNA pseudouridylate synthase LUM42_06040 PF01479 S4 domain LUM42_06050 PF02463 RecF/RecN/SMC N terminal domain LUM42_06055 PF00664 ABC transporter transmembrane region LUM42_06055 PF00005 ABC transporter LUM42_06060 PF00664 ABC transporter transmembrane region LUM42_06060 PF00005 ABC transporter LUM42_06065 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_06085 PF00266 Aminotransferase class-V LUM42_06095 PF02698 DUF218 domain LUM42_06105 PF00376 MerR family regulatory protein LUM42_06105 PF09278 MerR, DNA binding LUM42_06115 PF00293 NUDIX domain LUM42_06115 PF13344 Haloacid dehalogenase-like hydrolase LUM42_06120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_06120 PF03466 LysR substrate binding domain LUM42_06130 PF00390 Malic enzyme, N-terminal domain LUM42_06130 PF03949 Malic enzyme, NAD binding domain LUM42_06135 PF04408 Helicase associated domain (HA2) LUM42_06135 PF00270 DEAD/DEAH box helicase LUM42_06135 PF08482 ATP-dependent helicase C-terminal LUM42_06135 PF00271 Helicase conserved C-terminal domain LUM42_06150 PF03466 LysR substrate binding domain LUM42_06150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_06155 PF07690 Major Facilitator Superfamily LUM42_06160 PF13533 Biotin-lipoyl like LUM42_06165 PF03553 Na+/H+ antiporter family LUM42_06170 PF00120 Glutamine synthetase, catalytic domain LUM42_06175 PF07722 Peptidase C26 LUM42_06180 PF07883 Cupin domain LUM42_06180 PF01381 Helix-turn-helix LUM42_06185 PF00171 Aldehyde dehydrogenase family LUM42_06190 PF01266 FAD dependent oxidoreductase LUM42_06195 PF00795 Carbon-nitrogen hydrolase LUM42_06200 PF04371 Porphyromonas-type peptidyl-arginine deiminase LUM42_06205 PF00171 Aldehyde dehydrogenase family LUM42_06210 PF00202 Aminotransferase class-III LUM42_06215 PF01259 SAICAR synthetase LUM42_06235 PF00691 OmpA family LUM42_06235 PF13488 Glycine zipper LUM42_06250 PF02913 FAD linked oxidases, C-terminal domain LUM42_06250 PF01565 FAD binding domain LUM42_06250 PF13183 4Fe-4S dicluster domain LUM42_06255 PF04191 Phospholipid methyltransferase LUM42_06270 PF00221 Aromatic amino acid lyase LUM42_06275 PF17391 Urocanase N-terminal domain LUM42_06275 PF17392 Urocanase C-terminal domain LUM42_06275 PF01175 Urocanase Rossmann-like domain LUM42_06280 PF00491 Arginase family LUM42_06285 PF01979 Amidohydrolase family LUM42_06290 PF00392 Bacterial regulatory proteins, gntR family LUM42_06290 PF07702 UTRA domain LUM42_06295 PF04266 ASCH domain LUM42_06300 PF04269 Protein of unknown function, DUF440 LUM42_06305 PF01132 Elongation factor P (EF-P) OB domain LUM42_06305 PF08207 Elongation factor P (EF-P) KOW-like domain LUM42_06305 PF09285 Elongation factor P, C-terminal LUM42_06315 PF03104 DNA polymerase family B, exonuclease domain LUM42_06315 PF00136 DNA polymerase family B LUM42_06320 PF00072 Response regulator receiver domain LUM42_06320 PF00196 Bacterial regulatory proteins, luxR family LUM42_06325 PF08459 UvrC Helix-hairpin-helix N-terminal LUM42_06325 PF02151 UvrB/uvrC motif LUM42_06325 PF01541 GIY-YIG catalytic domain LUM42_06330 PF01066 CDP-alcohol phosphatidyltransferase LUM42_06355 PF07995 Glucose / Sorbosone dehydrogenase LUM42_06360 PF00990 Diguanylate cyclase, GGDEF domain LUM42_06360 PF00072 Response regulator receiver domain LUM42_06365 PF03466 LysR substrate binding domain LUM42_06365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_06375 PF01409 tRNA synthetases class II core domain (F) LUM42_06375 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LUM42_06380 PF01588 Putative tRNA binding domain LUM42_06380 PF03147 Ferredoxin-fold anticodon binding domain LUM42_06380 PF03483 B3/4 domain LUM42_06380 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LUM42_06380 PF03484 tRNA synthetase B5 domain LUM42_06385 PF00216 Bacterial DNA-binding protein LUM42_06390 PF05488 PAAR motif LUM42_06395 PF05724 Thiopurine S-methyltransferase (TPMT) LUM42_06400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_06400 PF08447 PAS fold LUM42_06400 PF13426 PAS domain LUM42_06405 PF02222 ATP-grasp domain LUM42_06425 PF00563 EAL domain LUM42_06425 PF08447 PAS fold LUM42_06425 PF08448 PAS fold LUM42_06425 PF00990 Diguanylate cyclase, GGDEF domain LUM42_06430 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LUM42_06430 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LUM42_06435 PF04172 LrgB-like family LUM42_06440 PF03788 LrgA family LUM42_06445 PF00929 Exonuclease LUM42_06445 PF08411 Exonuclease C-terminal LUM42_06470 PF00375 Sodium:dicarboxylate symporter family LUM42_06480 PF01613 Flavin reductase like domain LUM42_06485 PF02277 Phosphoribosyltransferase LUM42_06490 PF02654 Cobalamin-5-phosphate synthase LUM42_06495 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LUM42_06505 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LUM42_06510 PF01032 FecCD transport family LUM42_06515 PF00005 ABC transporter LUM42_06580 PF00437 Type II/IV secretion system protein LUM42_06585 PF13629 Pilus formation protein N terminal region LUM42_06585 PF00263 Bacterial type II and III secretion system protein LUM42_06585 PF04972 BON domain LUM42_06630 PF00356 Bacterial regulatory proteins, lacI family LUM42_06635 PF00005 ABC transporter LUM42_06635 PF17912 MalK OB fold domain LUM42_06640 PF13416 Bacterial extracellular solute-binding protein LUM42_06645 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_06650 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_06655 PF07745 Glycosyl hydrolase family 53 LUM42_06660 PF02449 Beta-galactosidase LUM42_06660 PF08533 Beta-galactosidase C-terminal domain LUM42_06660 PF08532 Beta-galactosidase trimerisation domain LUM42_06665 PF02264 LamB porin LUM42_06675 PF00132 Bacterial transferase hexapeptide (six repeats) LUM42_06675 PF12464 Maltose acetyltransferase LUM42_06700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_06700 PF03466 LysR substrate binding domain LUM42_06710 PF01863 Protein of unknown function DUF45 LUM42_06715 PF05971 RNA methyltransferase LUM42_06730 PF04204 Homoserine O-succinyltransferase LUM42_06750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_06765 PF17203 Single cache domain 3 LUM42_06765 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LUM42_06765 PF00989 PAS fold LUM42_06765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_06770 PF12431 Transcriptional regulator LUM42_06770 PF00072 Response regulator receiver domain LUM42_06780 PF01584 CheW-like domain LUM42_06780 PF00072 Response regulator receiver domain LUM42_06790 PF03841 L-seryl-tRNA selenium transferase LUM42_06790 PF12390 Selenocysteine synthase N terminal LUM42_06795 PF09105 Elongation factor SelB, winged helix LUM42_06795 PF09106 Elongation factor SelB, winged helix LUM42_06795 PF03144 Elongation factor Tu domain 2 LUM42_06795 PF09107 Elongation factor SelB, winged helix LUM42_06795 PF00009 Elongation factor Tu GTP binding domain LUM42_06800 PF00037 4Fe-4S binding domain LUM42_06800 PF12798 4Fe-4S binding domain LUM42_06805 PF00361 Proton-conducting membrane transporter LUM42_06810 PF00146 NADH dehydrogenase LUM42_06815 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LUM42_06815 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LUM42_06815 PF00374 Nickel-dependent hydrogenase LUM42_06820 PF12838 4Fe-4S dicluster domain LUM42_06825 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LUM42_06830 PF07450 Formate hydrogenlyase maturation protein HycH LUM42_06835 PF01750 Hydrogenase maturation protease LUM42_06840 PF13247 4Fe-4S dicluster domain LUM42_06840 PF12800 4Fe-4S binding domain LUM42_06850 PF01590 GAF domain LUM42_06850 PF00158 Sigma-54 interaction domain LUM42_06855 PF02634 FdhD/NarQ family LUM42_06860 PF04955 HupE / UreJ protein LUM42_06865 PF00708 Acylphosphatase LUM42_06865 PF17788 HypF Kae1-like domain LUM42_06865 PF01300 Telomere recombination LUM42_06865 PF07503 HypF finger LUM42_06870 PF01455 HupF/HypC family LUM42_06875 PF01924 Hydrogenase formation hypA family LUM42_06880 PF00586 AIR synthase related protein, N-terminal domain LUM42_06880 PF02769 AIR synthase related protein, C-terminal domain LUM42_06885 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LUM42_06890 PF02492 CobW/HypB/UreG, nucleotide-binding domain LUM42_06895 PF02635 DsrE/DsrF-like family LUM42_06900 PF00581 Rhodanese-like domain LUM42_06905 PF02769 AIR synthase related protein, C-terminal domain LUM42_06905 PF00586 AIR synthase related protein, N-terminal domain LUM42_06915 PF00072 Response regulator receiver domain LUM42_06915 PF00990 Diguanylate cyclase, GGDEF domain LUM42_06940 PF08447 PAS fold LUM42_06940 PF13426 PAS domain LUM42_06940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_06945 PF01699 Sodium/calcium exchanger protein LUM42_06950 PF05552 Conserved TM helix LUM42_06950 PF00924 Mechanosensitive ion channel LUM42_06965 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LUM42_06965 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LUM42_06970 PF00072 Response regulator receiver domain LUM42_06970 PF00486 Transcriptional regulatory protein, C terminal LUM42_06975 PF00512 His Kinase A (phospho-acceptor) domain LUM42_06975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_06975 PF00672 HAMP domain LUM42_06980 PF00141 Peroxidase LUM42_06995 PF02975 Methylamine dehydrogenase, L chain LUM42_07000 PF00578 AhpC/TSA family LUM42_07010 PF06433 Methylamine dehydrogenase heavy chain (MADH) LUM42_07015 PF10672 S-adenosylmethionine-dependent methyltransferase LUM42_07015 PF17785 PUA-like domain LUM42_07020 PF00708 Acylphosphatase LUM42_07025 PF04358 DsrC like protein LUM42_07030 PF01027 Inhibitor of apoptosis-promoting Bax1 LUM42_07035 PF00005 ABC transporter LUM42_07040 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_07045 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_07050 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_07055 PF10414 Sirohaem synthase dimerisation region LUM42_07055 PF14824 Sirohaem biosynthesis protein central LUM42_07055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LUM42_07065 PF04055 Radical SAM superfamily LUM42_07070 PF06508 Queuosine biosynthesis protein QueC LUM42_07075 PF03264 NapC/NirT cytochrome c family, N-terminal region LUM42_07080 PF01568 Molydopterin dinucleotide binding domain LUM42_07080 PF18364 Molybdopterin oxidoreductase N-terminal domain LUM42_07080 PF00384 Molybdopterin oxidoreductase LUM42_07090 PF07859 alpha/beta hydrolase fold LUM42_07095 PF04399 Glutaredoxin 2, C terminal domain LUM42_07095 PF13417 Glutathione S-transferase, N-terminal domain LUM42_07110 PF03707 Bacterial signalling protein N terminal repeat LUM42_07110 PF00990 Diguanylate cyclase, GGDEF domain LUM42_07110 PF00563 EAL domain LUM42_07120 PF00990 Diguanylate cyclase, GGDEF domain LUM42_07125 PF00012 Hsp70 protein LUM42_07130 PF00012 Hsp70 protein LUM42_07140 PF00990 Diguanylate cyclase, GGDEF domain LUM42_07170 PF02525 Flavodoxin-like fold LUM42_07175 PF00271 Helicase conserved C-terminal domain LUM42_07175 PF04408 Helicase associated domain (HA2) LUM42_07175 PF00270 DEAD/DEAH box helicase LUM42_07175 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LUM42_07175 PF11898 Domain of unknown function (DUF3418) LUM42_07185 PF01494 FAD binding domain LUM42_07190 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LUM42_07195 PF12697 Alpha/beta hydrolase family LUM42_07200 PF01557 Fumarylacetoacetate (FAA) hydrolase family LUM42_07205 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation LUM42_07205 PF01118 Semialdehyde dehydrogenase, NAD binding domain LUM42_07210 PF07836 DmpG-like communication domain LUM42_07210 PF00682 HMGL-like LUM42_07215 PF00083 Sugar (and other) transporter LUM42_07220 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_07220 PF14759 Reductase C-terminal LUM42_07225 PF00106 short chain dehydrogenase LUM42_07230 PF00355 Rieske [2Fe-2S] domain LUM42_07235 PF00866 Ring hydroxylating beta subunit LUM42_07240 PF00355 Rieske [2Fe-2S] domain LUM42_07240 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LUM42_07245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_07245 PF03466 LysR substrate binding domain LUM42_07250 PF09339 IclR helix-turn-helix domain LUM42_07250 PF01614 Bacterial transcriptional regulator LUM42_07270 PF01032 FecCD transport family LUM42_07275 PF01032 FecCD transport family LUM42_07280 PF00005 ABC transporter LUM42_07285 PF03466 LysR substrate binding domain LUM42_07285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_07290 PF07715 TonB-dependent Receptor Plug Domain LUM42_07290 PF00593 TonB dependent receptor LUM42_07295 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LUM42_07300 PF05638 Type VI secretion system effector, Hcp LUM42_07305 PF16671 Actin cross-linking domain LUM42_07305 PF04717 Type VI secretion system, phage-baseplate injector LUM42_07330 PF01235 Sodium:alanine symporter family LUM42_07345 PF01641 SelR domain LUM42_07350 PF04461 Protein of unknown function (DUF520) LUM42_07355 PF00793 DAHP synthetase I family LUM42_07360 PF00391 PEP-utilising enzyme, mobile domain LUM42_07360 PF02896 PEP-utilising enzyme, TIM barrel domain LUM42_07360 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LUM42_07375 PF13509 S1 domain LUM42_07375 PF17783 CvfB-like winged helix domain LUM42_07380 PF01189 16S rRNA methyltransferase RsmB/F LUM42_07380 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LUM42_07380 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LUM42_07385 PF02470 MlaD protein LUM42_07390 PF04403 Paraquat-inducible protein A LUM42_07395 PF00005 ABC transporter LUM42_07395 PF00664 ABC transporter transmembrane region LUM42_07400 PF13185 GAF domain LUM42_07405 PF17516 ProQ C-terminal domain LUM42_07405 PF04352 ProQ/FINO family LUM42_07410 PF17804 Tail specific protease N-terminal domain LUM42_07410 PF03572 Peptidase family S41 LUM42_07410 PF11818 C-terminal domain of tail specific protease (DUF3340) LUM42_07410 PF00595 PDZ domain LUM42_07425 PF11940 Domain of unknown function (DUF3458) Ig-like fold LUM42_07425 PF01433 Peptidase family M1 domain LUM42_07425 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LUM42_07435 PF05088 Bacterial NAD-glutamate dehydrogenase LUM42_07440 PF01180 Dihydroorotate dehydrogenase LUM42_07445 PF07126 Cell-division protein ZapC LUM42_07450 PF02926 THUMP domain LUM42_07450 PF01170 Putative RNA methylase family UPF0020 LUM42_07450 PF10672 S-adenosylmethionine-dependent methyltransferase LUM42_07460 PF12848 ABC transporter LUM42_07460 PF16326 ABC transporter C-terminal domain LUM42_07460 PF00005 ABC transporter LUM42_07470 PF04957 Ribosome modulation factor LUM42_07475 PF07977 FabA-like domain LUM42_07480 PF13654 AAA domain LUM42_07480 PF05362 Lon protease (S16) C-terminal proteolytic domain LUM42_07485 PF06303 MatP N-terminal domain LUM42_07485 PF17414 MatP C-terminal ribbon-helix-helix domain LUM42_07515 PF00263 Bacterial type II and III secretion system protein LUM42_07515 PF03958 Bacterial type II/III secretion system short domain LUM42_07545 PF05840 Bacteriophage replication gene A protein (GPA) LUM42_07680 PF01566 Natural resistance-associated macrophage protein LUM42_07685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_07685 PF00512 His Kinase A (phospho-acceptor) domain LUM42_07685 PF09308 LuxQ, periplasmic LUM42_07685 PF00072 Response regulator receiver domain LUM42_07700 PF00115 Cytochrome C and Quinol oxidase polypeptide I LUM42_07715 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LUM42_07715 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LUM42_07725 PF00403 Heavy-metal-associated domain LUM42_07740 PF13545 Crp-like helix-turn-helix domain LUM42_07740 PF00027 Cyclic nucleotide-binding domain LUM42_07745 PF00582 Universal stress protein family LUM42_07750 PF01171 PP-loop family LUM42_07770 PF00005 ABC transporter LUM42_07770 PF08402 TOBE domain LUM42_07775 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_07780 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_07785 PF13416 Bacterial extracellular solute-binding protein LUM42_07790 PF13416 Bacterial extracellular solute-binding protein LUM42_07795 PF02146 Sir2 family LUM42_07800 PF00909 Ammonium Transporter Family LUM42_07815 PF13247 4Fe-4S dicluster domain LUM42_07820 PF12838 4Fe-4S dicluster domain LUM42_07820 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LUM42_07820 PF00384 Molybdopterin oxidoreductase LUM42_07820 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LUM42_07820 PF01568 Molydopterin dinucleotide binding domain LUM42_07830 PF02613 Nitrate reductase delta subunit LUM42_07850 PF02634 FdhD/NarQ family LUM42_07865 PF00989 PAS fold LUM42_07865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_07865 PF00512 His Kinase A (phospho-acceptor) domain LUM42_07870 PF02954 Bacterial regulatory protein, Fis family LUM42_07870 PF00072 Response regulator receiver domain LUM42_07870 PF00158 Sigma-54 interaction domain LUM42_07875 PF12849 PBP superfamily domain LUM42_07880 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_07885 PF08402 TOBE domain LUM42_07885 PF00005 ABC transporter LUM42_07890 PF12804 MobA-like NTP transferase domain LUM42_07895 PF03454 MoeA C-terminal region (domain IV) LUM42_07895 PF03453 MoeA N-terminal region (domain I and II) LUM42_07895 PF00994 Probable molybdopterin binding domain LUM42_07905 PF00480 ROK family LUM42_07910 PF03942 DTW domain LUM42_07920 PF00672 HAMP domain LUM42_07920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_07920 PF02743 Cache domain LUM42_07925 PF00877 NlpC/P60 family LUM42_07935 PF03881 Fructosamine kinase LUM42_07945 PF00677 Lumazine binding domain LUM42_07950 PF01554 MatE LUM42_07960 PF01068 ATP dependent DNA ligase domain LUM42_07960 PF14743 DNA ligase OB-like domain LUM42_07965 PF01734 Patatin-like phospholipase LUM42_07980 PF03544 Gram-negative bacterial TonB protein C-terminal LUM42_07985 PF02472 Biopolymer transport protein ExbD/TolR LUM42_07990 PF01618 MotA/TolQ/ExbB proton channel family LUM42_07995 PF01618 MotA/TolQ/ExbB proton channel family LUM42_08005 PF08212 Lipocalin-like domain LUM42_08010 PF00753 Metallo-beta-lactamase superfamily LUM42_08015 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LUM42_08015 PF00056 lactate/malate dehydrogenase, NAD binding domain LUM42_08020 PF13416 Bacterial extracellular solute-binding protein LUM42_08025 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_08030 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_08035 PF00005 ABC transporter LUM42_08035 PF17912 MalK OB fold domain LUM42_08040 PF08220 DeoR-like helix-turn-helix domain LUM42_08040 PF00455 DeoR C terminal sensor domain LUM42_08050 PF04074 YhcH/YjgK/YiaL LUM42_08070 PF02798 Glutathione S-transferase, N-terminal domain LUM42_08070 PF14497 Glutathione S-transferase, C-terminal domain LUM42_08080 PF04209 homogentisate 1,2-dioxygenase LUM42_08085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LUM42_08090 PF12792 CSS motif domain associated with EAL LUM42_08090 PF00563 EAL domain LUM42_08095 PF07687 Peptidase dimerisation domain LUM42_08095 PF01546 Peptidase family M20/M25/M40 LUM42_08100 PF00501 AMP-binding enzyme LUM42_08100 PF13193 AMP-binding enzyme C-terminal domain LUM42_08100 PF00668 Condensation domain LUM42_08100 PF00550 Phosphopantetheine attachment site LUM42_08115 PF07690 Major Facilitator Superfamily LUM42_08120 PF00529 HlyD membrane-fusion protein of T1SS LUM42_08120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_08130 PF16177 Acetyl-coenzyme A synthetase N-terminus LUM42_08130 PF00501 AMP-binding enzyme LUM42_08130 PF13193 AMP-binding enzyme C-terminal domain LUM42_08135 PF04303 PrpF protein LUM42_08140 PF00694 Aconitase C-terminal domain LUM42_08140 PF00330 Aconitase family (aconitate hydratase) LUM42_08145 PF00285 Citrate synthase, C-terminal domain LUM42_08160 PF02805 Metal binding domain of Ada LUM42_08160 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LUM42_08160 PF12833 Helix-turn-helix domain LUM42_08160 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LUM42_08180 PF01970 Tripartite tricarboxylate transporter TctA family LUM42_08190 PF02653 Branched-chain amino acid transport system / permease component LUM42_08195 PF00005 ABC transporter LUM42_08200 PF13407 Periplasmic binding protein domain LUM42_08205 PF02837 Glycosyl hydrolases family 2, sugar binding domain LUM42_08205 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LUM42_08205 PF16353 Domain of unknown function(DUF4981) LUM42_08205 PF02929 Beta galactosidase small chain LUM42_08205 PF00703 Glycosyl hydrolases family 2 LUM42_08215 PF04400 (Na+)-NQR maturation NqrM LUM42_08220 PF00881 Nitroreductase family LUM42_08225 PF03992 Antibiotic biosynthesis monooxygenase LUM42_08230 PF03466 LysR substrate binding domain LUM42_08230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_08235 PF00158 Sigma-54 interaction domain LUM42_08235 PF00072 Response regulator receiver domain LUM42_08235 PF02954 Bacterial regulatory protein, Fis family LUM42_08240 PF00512 His Kinase A (phospho-acceptor) domain LUM42_08240 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_08240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_08245 PF00939 Sodium:sulfate symporter transmembrane region LUM42_08250 PF00892 EamA-like transporter family LUM42_08265 PF13302 Acetyltransferase (GNAT) domain LUM42_08270 PF00158 Sigma-54 interaction domain LUM42_08270 PF18024 Helix-turn-helix domain LUM42_08275 PF05128 Domain of unknown function (DUF697) LUM42_08280 PF04317 YcjX-like family, DUF463 LUM42_08295 PF04715 Anthranilate synthase component I, N terminal region LUM42_08295 PF00425 chorismate binding enzyme LUM42_08300 PF00072 Response regulator receiver domain LUM42_08300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_08300 PF09308 LuxQ, periplasmic LUM42_08300 PF00512 His Kinase A (phospho-acceptor) domain LUM42_08310 PF00293 NUDIX domain LUM42_08315 PF03222 Tryptophan/tyrosine permease family LUM42_08320 PF03313 Serine dehydratase alpha chain LUM42_08320 PF03315 Serine dehydratase beta chain LUM42_08325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_08330 PF12704 MacB-like periplasmic core domain LUM42_08330 PF00005 ABC transporter LUM42_08330 PF02687 FtsX-like permease family LUM42_08335 PF02321 Outer membrane efflux protein LUM42_08345 PF00561 alpha/beta hydrolase fold LUM42_08350 PF01242 6-pyruvoyl tetrahydropterin synthase LUM42_08355 PF00672 HAMP domain LUM42_08355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_08360 PF00152 tRNA synthetases class II (D, K and N) LUM42_08360 PF01336 OB-fold nucleic acid binding domain LUM42_08375 PF00155 Aminotransferase class I and II LUM42_08390 PF00929 Exonuclease LUM42_08390 PF02811 PHP domain LUM42_08390 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LUM42_08390 PF07733 Bacterial DNA polymerase III alpha NTPase domain LUM42_08390 PF14579 Helix-hairpin-helix motif LUM42_08395 PF00672 HAMP domain LUM42_08395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_08395 PF17200 Single Cache domain 2 LUM42_08400 PF02028 BCCT, betaine/carnitine/choline family transporter LUM42_08405 PF01047 MarR family LUM42_08410 PF00196 Bacterial regulatory proteins, luxR family LUM42_08410 PF00072 Response regulator receiver domain LUM42_08415 PF07730 Histidine kinase LUM42_08415 PF17200 Single Cache domain 2 LUM42_08420 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LUM42_08430 PF03480 Bacterial extracellular solute-binding protein, family 7 LUM42_08445 PF00753 Metallo-beta-lactamase superfamily LUM42_08450 PF05951 Bacterial protein of unknown function (DUF882) LUM42_08455 PF01471 Putative peptidoglycan binding domain LUM42_08455 PF03734 L,D-transpeptidase catalytic domain LUM42_08480 PF00925 GTP cyclohydrolase II LUM42_08490 PF03989 DNA gyrase C-terminal domain, beta-propeller LUM42_08490 PF00521 DNA gyrase/topoisomerase IV, subunit A LUM42_08500 PF03477 ATP cone domain LUM42_08500 PF02867 Ribonucleotide reductase, barrel domain LUM42_08500 PF00317 Ribonucleotide reductase, all-alpha domain LUM42_08505 PF00268 Ribonucleotide reductase, small chain LUM42_08510 PF00175 Oxidoreductase NAD-binding domain LUM42_08510 PF00111 2Fe-2S iron-sulfur cluster binding domain LUM42_08510 PF00970 Oxidoreductase FAD-binding domain LUM42_08520 PF00994 Probable molybdopterin binding domain LUM42_08530 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LUM42_08530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LUM42_08535 PF01202 Shikimate kinase LUM42_08540 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LUM42_08550 PF03480 Bacterial extracellular solute-binding protein, family 7 LUM42_08560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_08560 PF00672 HAMP domain LUM42_08560 PF02743 Cache domain LUM42_08570 PF16653 Saccharopine dehydrogenase C-terminal domain LUM42_08570 PF03435 Saccharopine dehydrogenase NADP binding domain LUM42_08575 PF00202 Aminotransferase class-III LUM42_08585 PF02321 Outer membrane efflux protein LUM42_08590 PF00691 OmpA family LUM42_08590 PF05736 OprF membrane domain LUM42_08595 PF06965 Na+/H+ antiporter 1 LUM42_08610 PF00005 ABC transporter LUM42_08615 PF01554 MatE LUM42_08620 PF13460 NAD(P)H-binding LUM42_08620 PF11066 Protein of unknown function (DUF2867) LUM42_08630 PF07690 Major Facilitator Superfamily LUM42_08635 PF00849 RNA pseudouridylate synthase LUM42_08635 PF01479 S4 domain LUM42_08640 PF00271 Helicase conserved C-terminal domain LUM42_08640 PF04851 Type III restriction enzyme, res subunit LUM42_08650 PF00486 Transcriptional regulatory protein, C terminal LUM42_08650 PF00072 Response regulator receiver domain LUM42_08655 PF00512 His Kinase A (phospho-acceptor) domain LUM42_08655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_08660 PF01386 Ribosomal L25p family LUM42_08665 PF10114 Sensory domain found in PocR LUM42_08665 PF12833 Helix-turn-helix domain LUM42_08675 PF03466 LysR substrate binding domain LUM42_08675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_08680 PF00698 Acyl transferase domain LUM42_08685 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG LUM42_08690 PF03547 Membrane transport protein LUM42_08700 PF01039 Carboxyl transferase domain LUM42_08705 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LUM42_08710 PF16957 Malonate decarboxylase, alpha subunit, transporter LUM42_08720 PF00583 Acetyltransferase (GNAT) family LUM42_08725 PF03949 Malic enzyme, NAD binding domain LUM42_08725 PF00390 Malic enzyme, N-terminal domain LUM42_08730 PF00206 Lyase LUM42_08730 PF10397 Adenylosuccinate lyase C-terminus LUM42_08735 PF03606 C4-dicarboxylate anaerobic carrier LUM42_08750 PF01418 Helix-turn-helix domain, rpiR family LUM42_08750 PF01380 SIS domain LUM42_08765 PF00313 'Cold-shock' DNA-binding domain LUM42_08775 PF01717 Cobalamin-independent synthase, Catalytic domain LUM42_08785 PF03222 Tryptophan/tyrosine permease family LUM42_08795 PF00005 ABC transporter LUM42_08810 PF06945 Protein of unknown function (DUF1289) LUM42_08820 PF13416 Bacterial extracellular solute-binding protein LUM42_08825 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_08830 PF00005 ABC transporter LUM42_08835 PF01066 CDP-alcohol phosphatidyltransferase LUM42_08850 PF00849 RNA pseudouridylate synthase LUM42_08855 PF10415 Fumarase C C-terminus LUM42_08855 PF00206 Lyase LUM42_08860 PF00209 Sodium:neurotransmitter symporter family LUM42_08865 PF13091 PLD-like domain LUM42_08865 PF13396 Phospholipase_D-nuclease N-terminal LUM42_08870 PF01053 Cys/Met metabolism PLP-dependent enzyme LUM42_08875 PF03352 Methyladenine glycosylase LUM42_08880 PF00873 AcrB/AcrD/AcrF family LUM42_08885 PF13533 Biotin-lipoyl like LUM42_08890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_08900 PF06667 Phage shock protein B LUM42_08905 PF04012 PspA/IM30 family LUM42_08910 PF02954 Bacterial regulatory protein, Fis family LUM42_08910 PF00158 Sigma-54 interaction domain LUM42_08915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LUM42_08920 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_08925 PF12911 N-terminal TM domain of oligopeptide transport permease C LUM42_08925 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_08930 PF00005 ABC transporter LUM42_08930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LUM42_08935 PF00005 ABC transporter LUM42_08950 PF02833 DHHA2 domain LUM42_08950 PF01368 DHH family LUM42_08960 PF16874 Glycosyl hydrolase family 36 C-terminal domain LUM42_08960 PF16875 Glycosyl hydrolase family 36 N-terminal domain LUM42_08970 PF01568 Molydopterin dinucleotide binding domain LUM42_08970 PF18364 Molybdopterin oxidoreductase N-terminal domain LUM42_08970 PF00384 Molybdopterin oxidoreductase LUM42_08975 PF03264 NapC/NirT cytochrome c family, N-terminal region LUM42_08980 PF06796 Periplasmic nitrate reductase protein NapE LUM42_08985 PF03649 Uncharacterised protein family (UPF0014) LUM42_08990 PF01226 Formate/nitrite transporter LUM42_09005 PF03466 LysR substrate binding domain LUM42_09005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_09010 PF01370 NAD dependent epimerase/dehydratase family LUM42_09015 PF02698 DUF218 domain LUM42_09020 PF00265 Thymidine kinase LUM42_09025 PF01336 OB-fold nucleic acid binding domain LUM42_09025 PF00152 tRNA synthetases class II (D, K and N) LUM42_09025 PF02938 GAD domain LUM42_09030 PF01904 Protein of unknown function DUF72 LUM42_09035 PF13649 Methyltransferase domain LUM42_09040 PF08003 Protein of unknown function (DUF1698) LUM42_09045 PF08443 RimK-like ATP-grasp domain LUM42_09045 PF18030 RimK PreATP-grasp domain LUM42_09060 PF04310 MukB N-terminal LUM42_09060 PF16330 MukB hinge domain LUM42_09065 PF04288 MukE-like family LUM42_09070 PF03882 MukF winged-helix domain LUM42_09070 PF17192 MukF middle domain LUM42_09070 PF17193 MukF C-terminal domain LUM42_09080 PF02698 DUF218 domain LUM42_09085 PF00072 Response regulator receiver domain LUM42_09085 PF00486 Transcriptional regulatory protein, C terminal LUM42_09090 PF02613 Nitrate reductase delta subunit LUM42_09095 PF00356 Bacterial regulatory proteins, lacI family LUM42_09100 PF04994 TfoX C-terminal domain LUM42_09100 PF04993 TfoX N-terminal domain LUM42_09120 PF00534 Glycosyl transferases group 1 LUM42_09120 PF08323 Starch synthase catalytic domain LUM42_09125 PF00483 Nucleotidyl transferase LUM42_09130 PF00072 Response regulator receiver domain LUM42_09130 PF00990 Diguanylate cyclase, GGDEF domain LUM42_09135 PF01131 DNA topoisomerase LUM42_09135 PF08272 Topoisomerase I zinc-ribbon-like LUM42_09135 PF01396 Topoisomerase DNA binding C4 zinc finger LUM42_09135 PF01751 Toprim domain LUM42_09140 PF10692 Protein of unknown function (DUF2498) LUM42_09145 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LUM42_09155 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LUM42_09160 PF04377 Arginine-tRNA-protein transferase, C terminus LUM42_09160 PF04376 Arginine-tRNA-protein transferase, N terminus LUM42_09165 PF01176 Translation initiation factor 1A / IF-1 LUM42_09170 PF07724 AAA domain (Cdc48 subfamily) LUM42_09170 PF10431 C-terminal, D2-small domain, of ClpB protein LUM42_09170 PF02861 Clp amino terminal domain, pathogenicity island component LUM42_09170 PF00004 ATPase family associated with various cellular activities (AAA) LUM42_09170 PF17871 AAA lid domain LUM42_09175 PF02617 ATP-dependent Clp protease adaptor protein ClpS LUM42_09180 PF00313 'Cold-shock' DNA-binding domain LUM42_09185 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_09185 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LUM42_09190 PF07690 Major Facilitator Superfamily LUM42_09195 PF03551 Transcriptional regulator PadR-like family LUM42_09195 PF10400 Virulence activator alpha C-term LUM42_09200 PF03971 Monomeric isocitrate dehydrogenase LUM42_09205 PF00849 RNA pseudouridylate synthase LUM42_09210 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LUM42_09210 PF01502 Phosphoribosyl-AMP cyclohydrolase LUM42_09215 PF00977 Histidine biosynthesis protein LUM42_09220 PF00977 Histidine biosynthesis protein LUM42_09225 PF00117 Glutamine amidotransferase class-I LUM42_09230 PF08645 Polynucleotide kinase 3 phosphatase LUM42_09230 PF00475 Imidazoleglycerol-phosphate dehydratase LUM42_09235 PF00155 Aminotransferase class I and II LUM42_09240 PF00815 Histidinol dehydrogenase LUM42_09245 PF01634 ATP phosphoribosyltransferase LUM42_09245 PF08029 HisG, C-terminal domain LUM42_09250 PF00072 Response regulator receiver domain LUM42_09250 PF00158 Sigma-54 interaction domain LUM42_09255 PF03553 Na+/H+ antiporter family LUM42_09260 PF00816 H-NS histone family LUM42_09265 PF00294 pfkB family carbohydrate kinase LUM42_09275 PF04356 Protein of unknown function (DUF489) LUM42_09280 PF00206 Lyase LUM42_09280 PF08328 Adenylosuccinate lyase C-terminal LUM42_09325 PF01435 Peptidase family M48 LUM42_09340 PF08241 Methyltransferase domain LUM42_09345 PF00155 Aminotransferase class I and II LUM42_09350 PF06968 Biotin and Thiamin Synthesis associated domain LUM42_09350 PF04055 Radical SAM superfamily LUM42_09355 PF00202 Aminotransferase class-III LUM42_09365 PF18267 Rubredoxin NAD+ reductase C-terminal domain LUM42_09365 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LUM42_09365 PF04324 BFD-like [2Fe-2S] binding domain LUM42_09365 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_09365 PF13806 Rieske-like [2Fe-2S] domain LUM42_09365 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LUM42_09370 PF00005 ABC transporter LUM42_09375 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_09380 PF00005 ABC transporter LUM42_09385 PF00072 Response regulator receiver domain LUM42_09385 PF03861 ANTAR domain LUM42_09390 PF02885 Glycosyl transferase family, helical bundle domain LUM42_09390 PF00591 Glycosyl transferase family, a/b domain LUM42_09395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LUM42_09395 PF14824 Sirohaem biosynthesis protein central LUM42_09395 PF10414 Sirohaem synthase dimerisation region LUM42_09400 PF01568 Molydopterin dinucleotide binding domain LUM42_09400 PF04324 BFD-like [2Fe-2S] binding domain LUM42_09400 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LUM42_09400 PF00384 Molybdopterin oxidoreductase LUM42_09410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LUM42_09410 PF02403 Seryl-tRNA synthetase N-terminal domain LUM42_09415 PF16193 AAA C-terminal domain LUM42_09415 PF00004 ATPase family associated with various cellular activities (AAA) LUM42_09415 PF12002 MgsA AAA+ ATPase C terminal LUM42_09420 PF03548 Outer membrane lipoprotein carrier protein LolA LUM42_09425 PF01043 SecA preprotein cross-linking domain LUM42_09425 PF07517 SecA DEAD-like domain LUM42_09425 PF02810 SEC-C motif LUM42_09425 PF07516 SecA Wing and Scaffold domain LUM42_09430 PF07963 Prokaryotic N-terminal methylation motif LUM42_09435 PF01207 Dihydrouridine synthase (Dus) LUM42_09440 PF05230 MASE2 domain LUM42_09440 PF00990 Diguanylate cyclase, GGDEF domain LUM42_09445 PF00005 ABC transporter LUM42_09450 PF02653 Branched-chain amino acid transport system / permease component LUM42_09460 PF04217 Protein of unknown function, DUF412 LUM42_09465 PF00871 Acetokinase family LUM42_09470 PF01515 Phosphate acetyl/butaryl transferase LUM42_09470 PF07085 DRTGG domain LUM42_09475 PF13194 Domain of unknown function (DUF4010) LUM42_09480 PF13409 Glutathione S-transferase, N-terminal domain LUM42_09490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LUM42_09490 PF00005 ABC transporter LUM42_09495 PF00005 ABC transporter LUM42_09495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LUM42_09500 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_09500 PF12911 N-terminal TM domain of oligopeptide transport permease C LUM42_09505 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_09510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LUM42_09515 PF04820 Tryptophan halogenase LUM42_09540 PF00550 Phosphopantetheine attachment site LUM42_09545 PF00550 Phosphopantetheine attachment site LUM42_09565 PF00535 Glycosyl transferase family 2 LUM42_09570 PF00221 Aromatic amino acid lyase LUM42_09595 PF02801 Beta-ketoacyl synthase, C-terminal domain LUM42_09595 PF00109 Beta-ketoacyl synthase, N-terminal domain LUM42_09610 PF02801 Beta-ketoacyl synthase, C-terminal domain LUM42_09610 PF00109 Beta-ketoacyl synthase, N-terminal domain LUM42_09625 PF00294 pfkB family carbohydrate kinase LUM42_09630 PF11471 Maltoporin periplasmic N-terminal extension LUM42_09630 PF02264 LamB porin LUM42_09635 PF01590 GAF domain LUM42_09635 PF00563 EAL domain LUM42_09635 PF00990 Diguanylate cyclase, GGDEF domain LUM42_09635 PF00360 Phytochrome region LUM42_09640 PF08244 Glycosyl hydrolases family 32 C terminal LUM42_09640 PF00251 Glycosyl hydrolases family 32 N-terminal domain LUM42_09645 PF00356 Bacterial regulatory proteins, lacI family LUM42_09650 PF02378 Phosphotransferase system, EIIC LUM42_09650 PF00367 phosphotransferase system, EIIB LUM42_09655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_09655 PF00512 His Kinase A (phospho-acceptor) domain LUM42_09660 PF00486 Transcriptional regulatory protein, C terminal LUM42_09660 PF00072 Response regulator receiver domain LUM42_09665 PF07715 TonB-dependent Receptor Plug Domain LUM42_09665 PF00593 TonB dependent receptor LUM42_09670 PF12833 Helix-turn-helix domain LUM42_09670 PF06445 GyrI-like small molecule binding domain LUM42_09675 PF07690 Major Facilitator Superfamily LUM42_09680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_09680 PF00529 HlyD membrane-fusion protein of T1SS LUM42_09685 PF02321 Outer membrane efflux protein LUM42_09690 PF00440 Bacterial regulatory proteins, tetR family LUM42_09695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LUM42_09700 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_09705 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_09705 PF12911 N-terminal TM domain of oligopeptide transport permease C LUM42_09710 PF00005 ABC transporter LUM42_09710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LUM42_09715 PF02581 Thiamine monophosphate synthase LUM42_09720 PF17954 Quercetinase C-terminal cupin domain LUM42_09720 PF02678 Pirin LUM42_09725 PF00232 Glycosyl hydrolase family 1 LUM42_09730 PF00356 Bacterial regulatory proteins, lacI family LUM42_09740 PF00005 ABC transporter LUM42_09745 PF00668 Condensation domain LUM42_09745 PF00975 Thioesterase domain LUM42_09745 PF00550 Phosphopantetheine attachment site LUM42_09745 PF13193 AMP-binding enzyme C-terminal domain LUM42_09745 PF00501 AMP-binding enzyme LUM42_09755 PF07715 TonB-dependent Receptor Plug Domain LUM42_09760 PF01032 FecCD transport family LUM42_09765 PF01032 FecCD transport family LUM42_09770 PF01497 Periplasmic binding protein LUM42_09775 PF00296 Luciferase-like monooxygenase LUM42_09780 PF00501 AMP-binding enzyme LUM42_09780 PF00550 Phosphopantetheine attachment site LUM42_09780 PF00668 Condensation domain LUM42_09780 PF13193 AMP-binding enzyme C-terminal domain LUM42_09785 PF00550 Phosphopantetheine attachment site LUM42_09785 PF08242 Methyltransferase domain LUM42_09785 PF00668 Condensation domain LUM42_09785 PF00501 AMP-binding enzyme LUM42_09790 PF00793 DAHP synthetase I family LUM42_09800 PF00425 chorismate binding enzyme LUM42_09805 PF13193 AMP-binding enzyme C-terminal domain LUM42_09805 PF00501 AMP-binding enzyme LUM42_09815 PF00550 Phosphopantetheine attachment site LUM42_09815 PF00857 Isochorismatase family LUM42_09820 PF07690 Major Facilitator Superfamily LUM42_09825 PF02525 Flavodoxin-like fold LUM42_09830 PF02254 TrkA-N domain LUM42_09830 PF00999 Sodium/hydrogen exchanger family LUM42_09840 PF06580 Histidine kinase LUM42_09840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_09840 PF07694 5TMR of 5TMR-LYT LUM42_09845 PF00072 Response regulator receiver domain LUM42_09845 PF04397 LytTr DNA-binding domain LUM42_09850 PF07690 Major Facilitator Superfamily LUM42_09875 PF02322 Cytochrome bd terminal oxidase subunit II LUM42_09880 PF01654 Cytochrome bd terminal oxidase subunit I LUM42_09885 PF00392 Bacterial regulatory proteins, gntR family LUM42_09885 PF00155 Aminotransferase class I and II LUM42_09890 PF00990 Diguanylate cyclase, GGDEF domain LUM42_09890 PF03707 Bacterial signalling protein N terminal repeat LUM42_09890 PF00563 EAL domain LUM42_09900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LUM42_09900 PF00384 Molybdopterin oxidoreductase LUM42_09900 PF01568 Molydopterin dinucleotide binding domain LUM42_09905 PF03916 Polysulphide reductase, NrfD LUM42_09910 PF13247 4Fe-4S dicluster domain LUM42_09915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_09915 PF00512 His Kinase A (phospho-acceptor) domain LUM42_09920 PF00196 Bacterial regulatory proteins, luxR family LUM42_09920 PF00072 Response regulator receiver domain LUM42_09925 PF00884 Sulfatase LUM42_09925 PF08019 Phosphoethanolamine transferase EptA/EptB LUM42_09930 PF01219 Prokaryotic diacylglycerol kinase LUM42_09935 PF00884 Sulfatase LUM42_09940 PF00271 Helicase conserved C-terminal domain LUM42_09940 PF00270 DEAD/DEAH box helicase LUM42_09960 PF11604 Copper binding periplasmic protein CusF LUM42_09965 PF00873 AcrB/AcrD/AcrF family LUM42_09985 PF12833 Helix-turn-helix domain LUM42_09990 PF01161 Phosphatidylethanolamine-binding protein LUM42_10000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_10000 PF03466 LysR substrate binding domain LUM42_10005 PF12729 Four helix bundle sensory module for signal transduction LUM42_10005 PF00672 HAMP domain LUM42_10005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_10010 PF00232 Glycosyl hydrolase family 1 LUM42_10015 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LUM42_10015 PF02378 Phosphotransferase system, EIIC LUM42_10015 PF00367 phosphotransferase system, EIIB LUM42_10020 PF00874 PRD domain LUM42_10020 PF03123 CAT RNA binding domain LUM42_10025 PF03547 Membrane transport protein LUM42_10030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_10030 PF03466 LysR substrate binding domain LUM42_10040 PF00563 EAL domain LUM42_10040 PF00990 Diguanylate cyclase, GGDEF domain LUM42_10040 PF08448 PAS fold LUM42_10050 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LUM42_10055 PF09619 Type III secretion system lipoprotein chaperone (YscW) LUM42_10065 PF01037 Lrp/AsnC ligand binding domain LUM42_10065 PF13404 AsnC-type helix-turn-helix domain LUM42_10070 PF00291 Pyridoxal-phosphate dependent enzyme LUM42_10080 PF18269 T3SS EscN ATPase C-terminal domain LUM42_10080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LUM42_10095 PF08345 Flagellar M-ring protein C-terminal LUM42_10095 PF01514 Secretory protein of YscJ/FliF family LUM42_10100 PF02049 Flagellar hook-basal body complex protein FliE LUM42_10105 PF00158 Sigma-54 interaction domain LUM42_10105 PF00072 Response regulator receiver domain LUM42_10105 PF02954 Bacterial regulatory protein, Fis family LUM42_10110 PF05736 OprF membrane domain LUM42_10110 PF00691 OmpA family LUM42_10120 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LUM42_10125 PF00813 FliP family LUM42_10130 PF01313 Bacterial export proteins, family 3 LUM42_10135 PF01311 Bacterial export proteins, family 1 LUM42_10140 PF01312 FlhB HrpN YscU SpaS Family LUM42_10145 PF00771 FHIPEP family LUM42_10155 PF00669 Bacterial flagellin N-terminal helical region LUM42_10155 PF00700 Bacterial flagellin C-terminal helical region LUM42_10160 PF02465 Flagellar hook-associated protein 2 N-terminus LUM42_10160 PF07195 Flagellar hook-associated protein 2 C-terminus LUM42_10160 PF07196 Flagellin hook IN motif LUM42_10180 PF03748 Flagellar basal body-associated protein FliL LUM42_10190 PF01618 MotA/TolQ/ExbB proton channel family LUM42_10195 PF13677 Membrane MotB of proton-channel complex MotA/MotB LUM42_10195 PF00691 OmpA family LUM42_10205 PF04170 NlpE N-terminal domain LUM42_10235 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LUM42_10245 PF03480 Bacterial extracellular solute-binding protein, family 7 LUM42_10250 PF04962 KduI/IolB family LUM42_10280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_10280 PF00460 Flagella basal body rod protein LUM42_10285 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LUM42_10285 PF10135 Rod binding protein LUM42_10290 PF02119 Flagellar P-ring protein LUM42_10295 PF02107 Flagellar L-ring protein LUM42_10300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_10300 PF00460 Flagella basal body rod protein LUM42_10305 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_10305 PF00460 Flagella basal body rod protein LUM42_10310 PF07559 Flagellar basal body protein FlaE LUM42_10310 PF00460 Flagella basal body rod protein LUM42_10310 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_10315 PF13860 FlgD Ig-like domain LUM42_10315 PF13861 FlgD Tudor-like domain LUM42_10315 PF03963 Flagellar hook capping protein - N-terminal region LUM42_10320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_10320 PF00460 Flagella basal body rod protein LUM42_10325 PF00460 Flagella basal body rod protein LUM42_10345 PF01464 Transglycosylase SLT domain LUM42_10345 PF01476 LysM domain LUM42_10350 PF06445 GyrI-like small molecule binding domain LUM42_10370 PF07690 Major Facilitator Superfamily LUM42_10375 PF03601 Conserved hypothetical protein 698 LUM42_10385 PF13193 AMP-binding enzyme C-terminal domain LUM42_10385 PF00501 AMP-binding enzyme LUM42_10390 PF13378 Enolase C-terminal domain-like LUM42_10395 PF00378 Enoyl-CoA hydratase/isomerase LUM42_10400 PF12697 Alpha/beta hydrolase family LUM42_10405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LUM42_10405 PF16582 Middle domain of thiamine pyrophosphate LUM42_10405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LUM42_10410 PF00425 chorismate binding enzyme LUM42_10415 PF00155 Aminotransferase class I and II LUM42_10425 PF13286 Phosphohydrolase-associated domain LUM42_10425 PF01966 HD domain LUM42_10445 PF01343 Peptidase family S49 LUM42_10445 PF08496 Peptidase family S49 N-terminal LUM42_10450 PF00106 short chain dehydrogenase LUM42_10465 PF07733 Bacterial DNA polymerase III alpha NTPase domain LUM42_10465 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LUM42_10465 PF14579 Helix-hairpin-helix motif LUM42_10465 PF02811 PHP domain LUM42_10465 PF01336 OB-fold nucleic acid binding domain LUM42_10470 PF00072 Response regulator receiver domain LUM42_10470 PF01584 CheW-like domain LUM42_10475 PF00480 ROK family LUM42_10480 PF00224 Pyruvate kinase, barrel domain LUM42_10480 PF02887 Pyruvate kinase, alpha/beta domain LUM42_10485 PF01734 Patatin-like phospholipase LUM42_10500 PF00209 Sodium:neurotransmitter symporter family LUM42_10515 PF02378 Phosphotransferase system, EIIC LUM42_10515 PF00367 phosphotransferase system, EIIB LUM42_10525 PF02378 Phosphotransferase system, EIIC LUM42_10525 PF00367 phosphotransferase system, EIIB LUM42_10525 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LUM42_10530 PF01026 TatD related DNase LUM42_10535 PF09115 DNA polymerase III, delta subunit, C terminal LUM42_10540 PF02223 Thymidylate kinase LUM42_10545 PF02618 YceG-like family LUM42_10550 PF01063 Amino-transferase class IV LUM42_10555 PF02801 Beta-ketoacyl synthase, C-terminal domain LUM42_10555 PF00109 Beta-ketoacyl synthase, N-terminal domain LUM42_10560 PF00550 Phosphopantetheine attachment site LUM42_10570 PF00698 Acyl transferase domain LUM42_10575 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LUM42_10575 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LUM42_10580 PF02504 Fatty acid synthesis protein LUM42_10585 PF01783 Ribosomal L32p protein family LUM42_10590 PF02620 Large ribosomal RNA subunit accumulation protein YceD LUM42_10595 PF02545 Maf-like protein LUM42_10600 PF00849 RNA pseudouridylate synthase LUM42_10600 PF01479 S4 domain LUM42_10605 PF12111 Polyribonucleotide phosphorylase C terminal LUM42_10605 PF10150 Ribonuclease E/G family LUM42_10605 PF00575 S1 RNA binding domain LUM42_10615 PF01740 STAS domain LUM42_10615 PF00916 Sulfate permease family LUM42_10625 PF00171 Aldehyde dehydrogenase family LUM42_10625 PF00465 Iron-containing alcohol dehydrogenase LUM42_10630 PF01914 MarC family integral membrane protein LUM42_10635 PF00027 Cyclic nucleotide-binding domain LUM42_10635 PF00520 Ion transport protein LUM42_10640 PF01118 Semialdehyde dehydrogenase, NAD binding domain LUM42_10640 PF02774 Semialdehyde dehydrogenase, dimerisation domain LUM42_10645 PF03553 Na+/H+ antiporter family LUM42_10655 PF04245 37-kD nucleoid-associated bacterial protein LUM42_10660 PF07208 Protein of unknown function (DUF1414) LUM42_10665 PF11893 Domain of unknown function (DUF3413) LUM42_10665 PF00884 Sulfatase LUM42_10675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_10675 PF03466 LysR substrate binding domain LUM42_10680 PF07690 Major Facilitator Superfamily LUM42_10695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_10695 PF00529 HlyD membrane-fusion protein of T1SS LUM42_10700 PF00155 Aminotransferase class I and II LUM42_10710 PF00850 Histone deacetylase domain LUM42_10720 PF01261 Xylose isomerase-like TIM barrel LUM42_10720 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LUM42_10725 PF08501 Shikimate dehydrogenase substrate binding domain LUM42_10725 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LUM42_10725 PF01488 Shikimate / quinate 5-dehydrogenase LUM42_10730 PF01970 Tripartite tricarboxylate transporter TctA family LUM42_10745 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LUM42_10755 PF04909 Amidohydrolase LUM42_10760 PF04303 PrpF protein LUM42_10765 PF03737 Aldolase/RraA LUM42_10770 PF04909 Amidohydrolase LUM42_10775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_10775 PF03466 LysR substrate binding domain LUM42_10785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LUM42_10790 PF00248 Aldo/keto reductase family LUM42_10795 PF03480 Bacterial extracellular solute-binding protein, family 7 LUM42_10805 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LUM42_10810 PF01494 FAD binding domain LUM42_10815 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit LUM42_10815 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LUM42_10820 PF01610 Transposase LUM42_10820 PF13542 Helix-turn-helix domain of transposase family ISL3 LUM42_10820 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LUM42_10825 PF01131 DNA topoisomerase LUM42_10825 PF01751 Toprim domain LUM42_10830 PF00462 Glutaredoxin LUM42_10835 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LUM42_10835 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LUM42_10850 PF04333 MlaA lipoprotein LUM42_10855 PF03918 Cytochrome C biogenesis protein LUM42_10860 PF03918 Cytochrome C biogenesis protein LUM42_10865 PF08534 Redoxin LUM42_10870 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LUM42_10870 PF01578 Cytochrome C assembly protein LUM42_10875 PF03100 CcmE LUM42_10880 PF04995 Heme exporter protein D (CcmD) LUM42_10885 PF01578 Cytochrome C assembly protein LUM42_10890 PF03379 CcmB protein LUM42_10895 PF00005 ABC transporter LUM42_10905 PF01584 CheW-like domain LUM42_10915 PF13614 AAA domain LUM42_10920 PF01339 CheB methylesterase LUM42_10920 PF00072 Response regulator receiver domain LUM42_10925 PF00072 Response regulator receiver domain LUM42_10925 PF01627 Hpt domain LUM42_10925 PF02895 Signal transducing histidine kinase, homodimeric domain LUM42_10925 PF01584 CheW-like domain LUM42_10925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_10930 PF04344 Chemotaxis phosphatase, CheZ LUM42_10935 PF00072 Response regulator receiver domain LUM42_10940 PF04542 Sigma-70 region 2 LUM42_10940 PF04539 Sigma-70 region 3 LUM42_10940 PF04545 Sigma-70, region 4 LUM42_10945 PF10609 NUBPL iron-transfer P-loop NTPase LUM42_10950 PF00448 SRP54-type protein, GTPase domain LUM42_10955 PF00771 FHIPEP family LUM42_10960 PF00300 Histidine phosphatase superfamily (branch 1) LUM42_10965 PF00675 Insulinase (Peptidase family M16) LUM42_10965 PF05193 Peptidase M16 inactive domain LUM42_10965 PF16187 Middle or third domain of peptidase_M16 LUM42_10970 PF06185 YecM protein LUM42_10975 PF00750 tRNA synthetases class I (R) LUM42_10975 PF05746 DALR anticodon binding domain LUM42_10975 PF03485 Arginyl tRNA synthetase N terminal domain LUM42_10990 PF07664 Ferrous iron transport protein B C terminus LUM42_10990 PF02421 Ferrous iron transport protein B LUM42_10990 PF07670 Nucleoside recognition LUM42_10995 PF04023 FeoA domain LUM42_11000 PF12833 Helix-turn-helix domain LUM42_11005 PF01297 Zinc-uptake complex component A periplasmic LUM42_11010 PF00005 ABC transporter LUM42_11015 PF00950 ABC 3 transport family LUM42_11020 PF00549 CoA-ligase LUM42_11020 PF02629 CoA binding domain LUM42_11025 PF08442 ATP-grasp domain LUM42_11025 PF00549 CoA-ligase LUM42_11030 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LUM42_11030 PF00364 Biotin-requiring enzyme LUM42_11030 PF02817 e3 binding domain LUM42_11035 PF02779 Transketolase, pyrimidine binding domain LUM42_11035 PF00676 Dehydrogenase E1 component LUM42_11035 PF16078 2-oxoglutarate dehydrogenase N-terminus LUM42_11035 PF16870 2-oxoglutarate dehydrogenase C-terminal LUM42_11040 PF13085 2Fe-2S iron-sulfur cluster binding domain LUM42_11045 PF00890 FAD binding domain LUM42_11045 PF02910 Fumarate reductase flavoprotein C-term LUM42_11050 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LUM42_11055 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LUM42_11060 PF00285 Citrate synthase, C-terminal domain LUM42_11065 PF01784 NIF3 (NGG1p interacting factor 3) LUM42_11075 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LUM42_11075 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LUM42_11075 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LUM42_11075 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LUM42_11080 PF03925 SeqA protein C-terminal domain LUM42_11080 PF17206 SeqA protein N-terminal domain LUM42_11085 PF12697 Alpha/beta hydrolase family LUM42_11095 PF00258 Flavodoxin LUM42_11100 PF04172 LrgB-like family LUM42_11105 PF03788 LrgA family LUM42_11110 PF03466 LysR substrate binding domain LUM42_11110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_11120 PF01475 Ferric uptake regulator family LUM42_11125 PF01118 Semialdehyde dehydrogenase, NAD binding domain LUM42_11125 PF02774 Semialdehyde dehydrogenase, dimerisation domain LUM42_11130 PF11890 Domain of unknown function (DUF3410) LUM42_11130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LUM42_11130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LUM42_11135 PF00109 Beta-ketoacyl synthase, N-terminal domain LUM42_11135 PF02801 Beta-ketoacyl synthase, C-terminal domain LUM42_11140 PF01266 FAD dependent oxidoreductase LUM42_11140 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LUM42_11150 PF08891 YfcL protein LUM42_11155 PF04315 Elongation factor P hydroxylase LUM42_11160 PF03458 UPF0126 domain LUM42_11165 PF01264 Chorismate synthase LUM42_11170 PF05175 Methyltransferase small domain LUM42_11175 PF01713 Smr domain LUM42_11180 PF01312 FlhB HrpN YscU SpaS Family LUM42_11185 PF01311 Bacterial export proteins, family 1 LUM42_11190 PF01313 Bacterial export proteins, family 3 LUM42_11195 PF00813 FliP family LUM42_11200 PF04347 Flagellar biosynthesis protein, FliO LUM42_11205 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LUM42_11210 PF02154 Flagellar motor switch protein FliM LUM42_11210 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LUM42_11230 PF18269 T3SS EscN ATPase C-terminal domain LUM42_11230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LUM42_11240 PF01706 FliG C-terminal domain LUM42_11240 PF14841 FliG middle domain LUM42_11240 PF14842 FliG N-terminal domain LUM42_11245 PF08345 Flagellar M-ring protein C-terminal LUM42_11245 PF01514 Secretory protein of YscJ/FliF family LUM42_11250 PF02049 Flagellar hook-basal body complex protein FliE LUM42_11255 PF02954 Bacterial regulatory protein, Fis family LUM42_11255 PF00072 Response regulator receiver domain LUM42_11255 PF00158 Sigma-54 interaction domain LUM42_11260 PF00512 His Kinase A (phospho-acceptor) domain LUM42_11260 PF13188 PAS domain LUM42_11260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_11265 PF00158 Sigma-54 interaction domain LUM42_11265 PF02954 Bacterial regulatory protein, Fis family LUM42_11265 PF06490 Flagellar regulatory protein FleQ LUM42_11270 PF02561 Flagellar protein FliS LUM42_11280 PF02465 Flagellar hook-associated protein 2 N-terminus LUM42_11280 PF07195 Flagellar hook-associated protein 2 C-terminus LUM42_11280 PF07196 Flagellin hook IN motif LUM42_11285 PF03646 FlaG protein LUM42_11290 PF00669 Bacterial flagellin N-terminal helical region LUM42_11290 PF00700 Bacterial flagellin C-terminal helical region LUM42_11290 PF07196 Flagellin hook IN motif LUM42_11295 PF00700 Bacterial flagellin C-terminal helical region LUM42_11295 PF07196 Flagellin hook IN motif LUM42_11295 PF00669 Bacterial flagellin N-terminal helical region LUM42_11300 PF07196 Flagellin hook IN motif LUM42_11300 PF00700 Bacterial flagellin C-terminal helical region LUM42_11300 PF00669 Bacterial flagellin N-terminal helical region LUM42_11305 PF04261 Dyp-type peroxidase family LUM42_11310 PF11143 Protein of unknown function (DUF2919) LUM42_11320 PF00474 Sodium:solute symporter family LUM42_11325 PF00478 IMP dehydrogenase / GMP reductase domain LUM42_11325 PF00571 CBS domain LUM42_11335 PF00356 Bacterial regulatory proteins, lacI family LUM42_11340 PF10509 Galactokinase galactose-binding signature LUM42_11340 PF00288 GHMP kinases N terminal domain LUM42_11340 PF08544 GHMP kinases C terminal LUM42_11345 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LUM42_11345 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LUM42_11350 PF16363 GDP-mannose 4,6 dehydratase LUM42_11360 PF03960 ArsC family LUM42_11365 PF07687 Peptidase dimerisation domain LUM42_11365 PF01546 Peptidase family M20/M25/M40 LUM42_11370 PF02557 D-alanyl-D-alanine carboxypeptidase LUM42_11380 PF06804 NlpB/DapX lipoprotein LUM42_11385 PF00701 Dihydrodipicolinate synthetase family LUM42_11390 PF01842 ACT domain LUM42_11420 PF00578 AhpC/TSA family LUM42_11465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_11465 PF02743 Cache domain LUM42_11465 PF00672 HAMP domain LUM42_11470 PF01594 AI-2E family transporter LUM42_11480 PF01435 Peptidase family M48 LUM42_11480 PF13181 Tetratricopeptide repeat LUM42_11485 PF03960 ArsC family LUM42_11490 PF03358 NADPH-dependent FMN reductase LUM42_11505 PF00860 Permease family LUM42_11510 PF04073 Aminoacyl-tRNA editing domain LUM42_11515 PF02872 5'-nucleotidase, C-terminal domain LUM42_11515 PF00149 Calcineurin-like phosphoesterase LUM42_11520 PF00793 DAHP synthetase I family LUM42_11525 PF13369 Transglutaminase-like superfamily LUM42_11530 PF04247 Invasion gene expression up-regulator, SirB LUM42_11535 PF13847 Methyltransferase domain LUM42_11535 PF17827 PrmC N-terminal domain LUM42_11540 PF03462 PCRF domain LUM42_11540 PF00472 RF-1 domain LUM42_11545 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LUM42_11545 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LUM42_11545 PF01488 Shikimate / quinate 5-dehydrogenase LUM42_11550 PF03550 Outer membrane lipoprotein LolB LUM42_11555 PF00288 GHMP kinases N terminal domain LUM42_11555 PF08544 GHMP kinases C terminal LUM42_11560 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LUM42_11560 PF14572 Phosphoribosyl synthetase-associated domain LUM42_11565 PF01195 Peptidyl-tRNA hydrolase LUM42_11570 PF06071 Protein of unknown function (DUF933) LUM42_11570 PF01926 50S ribosome-binding GTPase LUM42_11660 PF00700 Bacterial flagellin C-terminal helical region LUM42_11660 PF00669 Bacterial flagellin N-terminal helical region LUM42_11660 PF07196 Flagellin hook IN motif LUM42_11665 PF00700 Bacterial flagellin C-terminal helical region LUM42_11665 PF07196 Flagellin hook IN motif LUM42_11665 PF00669 Bacterial flagellin N-terminal helical region LUM42_11670 PF00669 Bacterial flagellin N-terminal helical region LUM42_11675 PF07196 Flagellin hook IN motif LUM42_11675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_11680 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LUM42_11680 PF10135 Rod binding protein LUM42_11685 PF02119 Flagellar P-ring protein LUM42_11690 PF02107 Flagellar L-ring protein LUM42_11695 PF00460 Flagella basal body rod protein LUM42_11695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_11700 PF00460 Flagella basal body rod protein LUM42_11700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_11705 PF00460 Flagella basal body rod protein LUM42_11705 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_11705 PF07559 Flagellar basal body protein FlaE LUM42_11710 PF03963 Flagellar hook capping protein - N-terminal region LUM42_11710 PF13860 FlgD Ig-like domain LUM42_11710 PF13861 FlgD Tudor-like domain LUM42_11715 PF00460 Flagella basal body rod protein LUM42_11715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LUM42_11720 PF00460 Flagella basal body rod protein LUM42_11725 PF01739 CheR methyltransferase, SAM binding domain LUM42_11725 PF03705 CheR methyltransferase, all-alpha domain LUM42_11730 PF01584 CheW-like domain LUM42_11730 PF00072 Response regulator receiver domain LUM42_11740 PF04316 Anti-sigma-28 factor, FlgM LUM42_11775 PF00691 OmpA family LUM42_11775 PF01389 OmpA-like transmembrane domain LUM42_11780 PF00749 tRNA synthetases class I (E and Q), catalytic domain LUM42_11785 PF00403 Heavy-metal-associated domain LUM42_11795 PF03173 Putative carbohydrate binding domain LUM42_11795 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LUM42_11795 PF00728 Glycosyl hydrolase family 20, catalytic domain LUM42_11795 PF02838 Glycosyl hydrolase family 20, domain 2 LUM42_11820 PF01713 Smr domain LUM42_11825 PF01479 S4 domain LUM42_11825 PF00849 RNA pseudouridylate synthase LUM42_11835 PF02769 AIR synthase related protein, C-terminal domain LUM42_11835 PF00586 AIR synthase related protein, N-terminal domain LUM42_11840 PF00551 Formyl transferase LUM42_11845 PF13230 Glutamine amidotransferases class-II LUM42_11850 PF13580 SIS domain LUM42_11855 PF09317 Domain of unknown function (DUF1974) LUM42_11855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LUM42_11855 PF02770 Acyl-CoA dehydrogenase, middle domain LUM42_11855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LUM42_11865 PF00929 Exonuclease LUM42_11870 PF00075 RNase H LUM42_11875 PF08241 Methyltransferase domain LUM42_11880 PF16123 Hydroxyacylglutathione hydrolase C-terminus LUM42_11880 PF00753 Metallo-beta-lactamase superfamily LUM42_11885 PF01476 LysM domain LUM42_11885 PF01464 Transglycosylase SLT domain LUM42_11895 PF03372 Endonuclease/Exonuclease/phosphatase family LUM42_11900 PF00543 Nitrogen regulatory protein P-II LUM42_11905 PF00034 Cytochrome c LUM42_11910 PF01171 PP-loop family LUM42_11910 PF09179 TilS substrate binding domain LUM42_11910 PF11734 TilS substrate C-terminal domain LUM42_11915 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LUM42_11920 PF14579 Helix-hairpin-helix motif LUM42_11920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LUM42_11920 PF01336 OB-fold nucleic acid binding domain LUM42_11920 PF07733 Bacterial DNA polymerase III alpha NTPase domain LUM42_11920 PF02811 PHP domain LUM42_11925 PF01351 Ribonuclease HII LUM42_11930 PF02684 Lipid-A-disaccharide synthetase LUM42_11935 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LUM42_11935 PF00132 Bacterial transferase hexapeptide (six repeats) LUM42_11940 PF07977 FabA-like domain LUM42_11945 PF00132 Bacterial transferase hexapeptide (six repeats) LUM42_11945 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LUM42_11950 PF03938 Outer membrane protein (OmpH-like) LUM42_11955 PF01103 Surface antigen LUM42_11955 PF07244 Surface antigen variable number repeat LUM42_11960 PF02163 Peptidase family M50 LUM42_11960 PF17820 PDZ domain LUM42_11965 PF13288 DXP reductoisomerase C-terminal domain LUM42_11965 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LUM42_11965 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LUM42_11975 PF01255 Putative undecaprenyl diphosphate synthase LUM42_11980 PF01765 Ribosome recycling factor LUM42_11985 PF00696 Amino acid kinase family LUM42_11990 PF00889 Elongation factor TS LUM42_11995 PF00318 Ribosomal protein S2 LUM42_12000 PF00557 Metallopeptidase family M24 LUM42_12005 PF08335 GlnD PII-uridylyltransferase LUM42_12005 PF01966 HD domain LUM42_12005 PF01909 Nucleotidyltransferase domain LUM42_12010 PF11944 Protein of unknown function (DUF3461) LUM42_12015 PF04608 Phosphatidylglycerophosphatase A LUM42_12020 PF02769 AIR synthase related protein, C-terminal domain LUM42_12020 PF00586 AIR synthase related protein, N-terminal domain LUM42_12025 PF01029 NusB family LUM42_12030 PF00885 6,7-dimethyl-8-ribityllumazine synthase LUM42_12035 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LUM42_12035 PF00925 GTP cyclohydrolase II LUM42_12040 PF00677 Lumazine binding domain LUM42_12045 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LUM42_12045 PF01872 RibD C-terminal domain LUM42_12050 PF03477 ATP cone domain LUM42_12055 PF00171 Aldehyde dehydrogenase family LUM42_12060 PF00696 Amino acid kinase family LUM42_12060 PF01472 PUA domain LUM42_12065 PF07417 Sigma factor-binding transcriptional regulator Crl LUM42_12070 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LUM42_12075 PF00156 Phosphoribosyl transferase domain LUM42_12080 PF00860 Permease family LUM42_12085 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LUM42_12095 PF03480 Bacterial extracellular solute-binding protein, family 7 LUM42_12100 PF00171 Aldehyde dehydrogenase family LUM42_12105 PF00202 Aminotransferase class-III LUM42_12110 PF00392 Bacterial regulatory proteins, gntR family LUM42_12110 PF00155 Aminotransferase class I and II LUM42_12115 PF01546 Peptidase family M20/M25/M40 LUM42_12115 PF07687 Peptidase dimerisation domain LUM42_12120 PF08443 RimK-like ATP-grasp domain LUM42_12120 PF18030 RimK PreATP-grasp domain LUM42_12125 PF08443 RimK-like ATP-grasp domain LUM42_12125 PF18030 RimK PreATP-grasp domain LUM42_12135 PF00209 Sodium:neurotransmitter symporter family LUM42_12140 PF01590 GAF domain LUM42_12140 PF00563 EAL domain LUM42_12140 PF00360 Phytochrome region LUM42_12140 PF00990 Diguanylate cyclase, GGDEF domain LUM42_12150 PF11799 impB/mucB/samB family C-terminal domain LUM42_12150 PF11798 IMS family HHH motif LUM42_12150 PF00817 impB/mucB/samB family LUM42_12165 PF02424 ApbE family LUM42_12170 PF00970 Oxidoreductase FAD-binding domain LUM42_12170 PF00111 2Fe-2S iron-sulfur cluster binding domain LUM42_12170 PF00175 Oxidoreductase NAD-binding domain LUM42_12175 PF02508 Rnf-Nqr subunit, membrane protein LUM42_12180 PF02508 Rnf-Nqr subunit, membrane protein LUM42_12185 PF04205 FMN-binding domain LUM42_12190 PF03116 NQR2, RnfD, RnfE family LUM42_12195 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LUM42_12195 PF11973 NQRA C-terminal domain LUM42_12200 PF01722 BolA-like protein LUM42_12205 PF05175 Methyltransferase small domain LUM42_12215 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LUM42_12220 PF07690 Major Facilitator Superfamily LUM42_12225 PF00881 Nitroreductase family LUM42_12235 PF01738 Dienelactone hydrolase family LUM42_12270 PF01979 Amidohydrolase family LUM42_12275 PF09084 NMT1/THI5 like LUM42_12280 PF00005 ABC transporter LUM42_12285 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_12290 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LUM42_12300 PF00004 ATPase family associated with various cellular activities (AAA) LUM42_12300 PF07724 AAA domain (Cdc48 subfamily) LUM42_12300 PF17871 AAA lid domain LUM42_12300 PF02861 Clp amino terminal domain, pathogenicity island component LUM42_12300 PF10431 C-terminal, D2-small domain, of ClpB protein LUM42_12305 PF02578 Multi-copper polyphenol oxidoreductase laccase LUM42_12310 PF01479 S4 domain LUM42_12310 PF00849 RNA pseudouridylate synthase LUM42_12315 PF13525 Outer membrane lipoprotein LUM42_12320 PF01464 Transglycosylase SLT domain LUM42_12325 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LUM42_12330 PF01817 Chorismate mutase type II LUM42_12330 PF00800 Prephenate dehydratase LUM42_12335 PF13416 Bacterial extracellular solute-binding protein LUM42_12340 PF00563 EAL domain LUM42_12340 PF00990 Diguanylate cyclase, GGDEF domain LUM42_12345 PF01931 Protein of unknown function DUF84 LUM42_12350 PF01371 Trp repressor protein LUM42_12355 PF14718 Soluble lytic murein transglycosylase L domain LUM42_12355 PF01464 Transglycosylase SLT domain LUM42_12360 PF12848 ABC transporter LUM42_12360 PF00005 ABC transporter LUM42_12365 PF07238 PilZ domain LUM42_12370 PF02153 Prephenate dehydrogenase LUM42_12370 PF01817 Chorismate mutase type II LUM42_12375 PF00793 DAHP synthetase I family LUM42_12380 PF06580 Histidine kinase LUM42_12380 PF07694 5TMR of 5TMR-LYT LUM42_12385 PF04397 LytTr DNA-binding domain LUM42_12385 PF00072 Response regulator receiver domain LUM42_12390 PF00933 Glycosyl hydrolase family 3 N terminal domain LUM42_12395 PF03702 Anhydro-N-acetylmuramic acid kinase LUM42_12400 PF13580 SIS domain LUM42_12405 PF00999 Sodium/hydrogen exchanger family LUM42_12415 PF02554 Carbon starvation protein CstA LUM42_12420 PF02401 LytB protein LUM42_12425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LUM42_12430 PF01252 Signal peptidase (SPase) II LUM42_12435 PF06827 Zinc finger found in FPG and IleRS LUM42_12435 PF00133 tRNA synthetases class I (I, L, M and V) LUM42_12435 PF08264 Anticodon-binding domain of tRNA LUM42_12440 PF01687 Riboflavin kinase LUM42_12440 PF06574 FAD synthetase LUM42_12445 PF03023 Lipid II flippase MurJ LUM42_12450 PF01649 Ribosomal protein S20 LUM42_12455 PF01022 Bacterial regulatory protein, arsR family LUM42_12460 PF03466 LysR substrate binding domain LUM42_12460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_12465 PF02690 Na+/Pi-cotransporter LUM42_12470 PF00303 Thymidylate synthase LUM42_12475 PF01790 Prolipoprotein diacylglyceryl transferase LUM42_12480 PF01925 Sulfite exporter TauE/SafE LUM42_12485 PF01590 GAF domain LUM42_12485 PF05524 PEP-utilising enzyme, N-terminal LUM42_12485 PF00391 PEP-utilising enzyme, mobile domain LUM42_12485 PF02896 PEP-utilising enzyme, TIM barrel domain LUM42_12490 PF00293 NUDIX domain LUM42_12495 PF02976 DNA mismatch repair enzyme MutH LUM42_12505 PF00248 Aldo/keto reductase family LUM42_12515 PF02954 Bacterial regulatory protein, Fis family LUM42_12515 PF00072 Response regulator receiver domain LUM42_12515 PF00158 Sigma-54 interaction domain LUM42_12520 PF01336 OB-fold nucleic acid binding domain LUM42_12520 PF00152 tRNA synthetases class II (D, K and N) LUM42_12530 PF05525 Branched-chain amino acid transport protein LUM42_12535 PF05175 Methyltransferase small domain LUM42_12540 PF00270 DEAD/DEAH box helicase LUM42_12540 PF00271 Helicase conserved C-terminal domain LUM42_12545 PF16658 Class II release factor RF3, C-terminal domain LUM42_12545 PF03144 Elongation factor Tu domain 2 LUM42_12545 PF00009 Elongation factor Tu GTP binding domain LUM42_12550 PF01381 Helix-turn-helix LUM42_12550 PF00717 Peptidase S24-like LUM42_12590 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LUM42_12590 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_12590 PF00403 Heavy-metal-associated domain LUM42_12595 PF03203 MerC mercury resistance protein LUM42_12600 PF00403 Heavy-metal-associated domain LUM42_12605 PF02411 MerT mercuric transport protein LUM42_12610 PF09278 MerR, DNA binding LUM42_12610 PF00376 MerR family regulatory protein LUM42_12620 PF06122 Conjugative relaxosome accessory transposon protein LUM42_12630 PF01810 LysE type translocator LUM42_12655 PF12793 Sugar transport-related sRNA regulator N-term LUM42_12655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LUM42_12675 PF04002 RadC-like JAB domain LUM42_12680 PF00092 von Willebrand factor type A domain LUM42_12700 PF07728 AAA domain (dynein-related subfamily) LUM42_12720 PF00436 Single-strand binding protein family LUM42_12735 PF02028 BCCT, betaine/carnitine/choline family transporter LUM42_12750 PF03707 Bacterial signalling protein N terminal repeat LUM42_12750 PF00990 Diguanylate cyclase, GGDEF domain LUM42_12750 PF00563 EAL domain LUM42_12755 PF00990 Diguanylate cyclase, GGDEF domain LUM42_12775 PF06986 Type-1V conjugative transfer system mating pair stabilisation LUM42_12780 PF06834 TraU protein LUM42_12790 PF10502 Signal peptidase, peptidase S26 LUM42_12805 PF13098 Thioredoxin-like domain LUM42_12805 PF10411 Disulfide bond isomerase protein N-terminus LUM42_12900 PF18766 SWI2/SNF2 ATPase LUM42_12900 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LUM42_12900 PF11867 Domain of unknown function (DUF3387) LUM42_12910 PF01420 Type I restriction modification DNA specificity domain LUM42_12915 PF02384 N-6 DNA Methylase LUM42_12930 PF07733 Bacterial DNA polymerase III alpha NTPase domain LUM42_12930 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LUM42_12930 PF14579 Helix-hairpin-helix motif LUM42_12930 PF02811 PHP domain LUM42_12930 PF00929 Exonuclease LUM42_12930 PF11490 DNA polymerase III polC-type N-terminus II LUM42_12935 PF00717 Peptidase S24-like LUM42_12940 PF00817 impB/mucB/samB family LUM42_12940 PF11799 impB/mucB/samB family C-terminal domain LUM42_12940 PF13438 Domain of unknown function (DUF4113) LUM42_12975 PF17876 Cold shock domain LUM42_12975 PF08461 Ribonuclease R winged-helix domain LUM42_12975 PF08206 Ribonuclease B OB domain LUM42_12975 PF00773 RNB domain LUM42_12975 PF00575 S1 RNA binding domain LUM42_12980 PF00313 'Cold-shock' DNA-binding domain LUM42_12995 PF13657 HipA N-terminal domain LUM42_12995 PF07804 HipA-like C-terminal domain LUM42_13000 PF01381 Helix-turn-helix LUM42_13005 PF00563 EAL domain LUM42_13005 PF00990 Diguanylate cyclase, GGDEF domain LUM42_13005 PF03707 Bacterial signalling protein N terminal repeat LUM42_13020 PF13508 Acetyltransferase (GNAT) domain LUM42_13025 PF02036 SCP-2 sterol transfer family LUM42_13030 PF00563 EAL domain LUM42_13030 PF00990 Diguanylate cyclase, GGDEF domain LUM42_13030 PF03707 Bacterial signalling protein N terminal repeat LUM42_13035 PF01136 Peptidase family U32 LUM42_13040 PF01136 Peptidase family U32 LUM42_13045 PF01554 MatE LUM42_13055 PF13181 Tetratricopeptide repeat LUM42_13055 PF07719 Tetratricopeptide repeat LUM42_13060 PF00575 S1 RNA binding domain LUM42_13060 PF01138 3' exoribonuclease family, domain 1 LUM42_13060 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LUM42_13060 PF00013 KH domain LUM42_13060 PF03725 3' exoribonuclease family, domain 2 LUM42_13065 PF00312 Ribosomal protein S15 LUM42_13070 PF16198 tRNA pseudouridylate synthase B C-terminal domain LUM42_13070 PF01509 TruB family pseudouridylate synthase (N terminal domain) LUM42_13070 PF09157 Pseudouridine synthase II TruB, C-terminal LUM42_13075 PF02033 Ribosome-binding factor A LUM42_13080 PF00009 Elongation factor Tu GTP binding domain LUM42_13080 PF04760 Translation initiation factor IF-2, N-terminal region LUM42_13080 PF08364 Bacterial translation initiation factor IF-2 associated region LUM42_13080 PF11987 Translation-initiation factor 2 LUM42_13085 PF13184 NusA-like KH domain LUM42_13085 PF08529 NusA N-terminal domain LUM42_13085 PF00575 S1 RNA binding domain LUM42_13090 PF02576 RimP N-terminal domain LUM42_13090 PF17384 RimP C-terminal SH3 domain LUM42_13105 PF03840 Preprotein translocase SecG subunit LUM42_13110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LUM42_13110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LUM42_13110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LUM42_13110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LUM42_13115 PF00809 Pterin binding enzyme LUM42_13120 PF17862 AAA+ lid domain LUM42_13120 PF00004 ATPase family associated with various cellular activities (AAA) LUM42_13120 PF01434 Peptidase family M41 LUM42_13120 PF06480 FtsH Extracellular LUM42_13125 PF01728 FtsJ-like methyltransferase LUM42_13130 PF01985 CRS1 / YhbY (CRM) domain LUM42_13135 PF01272 Transcription elongation factor, GreA/GreB, C-term LUM42_13135 PF03449 Transcription elongation factor, N-terminal LUM42_13140 PF13609 Gram-negative porin LUM42_13145 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LUM42_13150 PF03448 MgtE intracellular N domain LUM42_13150 PF01769 Divalent cation transporter LUM42_13150 PF00571 CBS domain LUM42_13160 PF00579 tRNA synthetases class I (W and Y) LUM42_13160 PF01479 S4 domain LUM42_13165 PF01551 Peptidase family M23 LUM42_13165 PF04225 Opacity-associated protein A LysM-like domain LUM42_13170 PF00873 AcrB/AcrD/AcrF family LUM42_13180 PF01521 Iron-sulphur cluster biosynthesis LUM42_13185 PF00202 Aminotransferase class-III LUM42_13190 PF01594 AI-2E family transporter LUM42_13195 PF05175 Methyltransferase small domain LUM42_13195 PF08468 Methyltransferase small domain N-terminal LUM42_13200 PF09308 LuxQ, periplasmic LUM42_13200 PF00512 His Kinase A (phospho-acceptor) domain LUM42_13200 PF00072 Response regulator receiver domain LUM42_13200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_13205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LUM42_13210 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_13215 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_13215 PF12911 N-terminal TM domain of oligopeptide transport permease C LUM42_13220 PF00005 ABC transporter LUM42_13220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LUM42_13225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LUM42_13225 PF00005 ABC transporter LUM42_13235 PF01869 BadF/BadG/BcrA/BcrD ATPase family LUM42_13240 PF02838 Glycosyl hydrolase family 20, domain 2 LUM42_13240 PF00728 Glycosyl hydrolase family 20, catalytic domain LUM42_13245 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LUM42_13245 PF06165 Glycosyltransferase family 36 LUM42_13250 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LUM42_13250 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LUM42_13250 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LUM42_13250 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LUM42_13255 PF00005 ABC transporter LUM42_13265 PF13416 Bacterial extracellular solute-binding protein LUM42_13270 PF00909 Ammonium Transporter Family LUM42_13275 PF00543 Nitrogen regulatory protein P-II LUM42_13280 PF06062 Uncharacterised protein family (UPF0231) LUM42_13285 PF06434 Aconitate hydratase 2 N-terminus LUM42_13285 PF11791 Aconitate B N-terminal domain LUM42_13285 PF00330 Aconitase family (aconitate hydratase) LUM42_13290 PF01734 Patatin-like phospholipase LUM42_13295 PF00912 Transglycosylase LUM42_13295 PF00905 Penicillin binding protein transpeptidase domain LUM42_13295 PF14814 Bifunctional transglycosylase second domain LUM42_13300 PF08482 ATP-dependent helicase C-terminal LUM42_13300 PF04408 Helicase associated domain (HA2) LUM42_13300 PF00270 DEAD/DEAH box helicase LUM42_13300 PF00271 Helicase conserved C-terminal domain LUM42_13305 PF03749 Sugar fermentation stimulation protein RE domain LUM42_13305 PF17746 SfsA N-terminal OB domain LUM42_13310 PF01258 Prokaryotic dksA/traR C4-type zinc finger LUM42_13315 PF00749 tRNA synthetases class I (E and Q), catalytic domain LUM42_13320 PF12626 Polymerase A arginine-rich C-terminus LUM42_13320 PF12627 Probable RNA and SrmB- binding site of polymerase A LUM42_13320 PF01743 Poly A polymerase head domain LUM42_13325 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LUM42_13330 PF02548 Ketopantoate hydroxymethyltransferase LUM42_13335 PF02569 Pantoate-beta-alanine ligase LUM42_13340 PF01061 ABC-2 type transporter LUM42_13345 PF00005 ABC transporter LUM42_13350 PF00484 Carbonic anhydrase LUM42_13355 PF00156 Phosphoribosyl transferase domain LUM42_13360 PF00440 Bacterial regulatory proteins, tetR family LUM42_13365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LUM42_13365 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_13370 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LUM42_13370 PF00364 Biotin-requiring enzyme LUM42_13370 PF02817 e3 binding domain LUM42_13375 PF00456 Transketolase, thiamine diphosphate binding domain LUM42_13375 PF17831 Pyruvate dehydrogenase E1 component middle domain LUM42_13380 PF07729 FCD domain LUM42_13380 PF00392 Bacterial regulatory proteins, gntR family LUM42_13385 PF01368 DHH family LUM42_13385 PF02272 DHHA1 domain LUM42_13385 PF17768 RecJ OB domain LUM42_13390 PF10411 Disulfide bond isomerase protein N-terminus LUM42_13390 PF13098 Thioredoxin-like domain LUM42_13395 PF00589 Phage integrase family LUM42_13395 PF02899 Phage integrase, N-terminal SAM-like domain LUM42_13400 PF00258 Flavodoxin LUM42_13405 PF01510 N-acetylmuramoyl-L-alanine amidase LUM42_13410 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LUM42_13410 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LUM42_13415 PF07963 Prokaryotic N-terminal methylation motif LUM42_13415 PF00114 Pilin (bacterial filament) LUM42_13420 PF00437 Type II/IV secretion system protein LUM42_13420 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LUM42_13425 PF00482 Type II secretion system (T2SS), protein F LUM42_13430 PF01478 Type IV leader peptidase family LUM42_13430 PF06750 Bacterial Peptidase A24 N-terminal domain LUM42_13435 PF01121 Dephospho-CoA kinase LUM42_13440 PF07072 Cell division protein LUM42_13445 PF03884 DNA gyrase inhibitor YacG LUM42_13450 PF03989 DNA gyrase C-terminal domain, beta-propeller LUM42_13450 PF00521 DNA gyrase/topoisomerase IV, subunit A LUM42_13455 PF00204 DNA gyrase B LUM42_13455 PF00986 DNA gyrase B subunit, carboxyl terminus LUM42_13455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_13455 PF01751 Toprim domain LUM42_13460 PF05728 Uncharacterised protein family (UPF0227) LUM42_13465 PF00149 Calcineurin-like phosphoesterase LUM42_13470 PF06853 Protein of unknown function (DUF1249) LUM42_13475 PF00293 NUDIX domain LUM42_13480 PF02321 Outer membrane efflux protein LUM42_13485 PF00294 pfkB family carbohydrate kinase LUM42_13485 PF01467 Cytidylyltransferase-like LUM42_13490 PF08335 GlnD PII-uridylyltransferase LUM42_13490 PF03710 Glutamate-ammonia ligase adenylyltransferase LUM42_13495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_13495 PF02743 Cache domain LUM42_13495 PF00672 HAMP domain LUM42_13500 PF07885 Ion channel LUM42_13505 PF01928 CYTH domain LUM42_13510 PF01865 Protein of unknown function DUF47 LUM42_13515 PF01384 Phosphate transporter family LUM42_13520 PF08239 Bacterial SH3 domain LUM42_13530 PF01471 Putative peptidoglycan binding domain LUM42_13530 PF13401 AAA domain LUM42_13535 PF12627 Probable RNA and SrmB- binding site of polymerase A LUM42_13535 PF01743 Poly A polymerase head domain LUM42_13535 PF01966 HD domain LUM42_13540 PF00113 Enolase, C-terminal TIM barrel domain LUM42_13540 PF03952 Enolase, N-terminal domain LUM42_13545 PF06418 CTP synthase N-terminus LUM42_13545 PF00117 Glutamine amidotransferase class-I LUM42_13550 PF03819 MazG nucleotide pyrophosphohydrolase domain LUM42_13555 PF13291 ACT domain LUM42_13555 PF04607 Region found in RelA / SpoT proteins LUM42_13555 PF02824 TGS domain LUM42_13560 PF01938 TRAM domain LUM42_13560 PF05958 tRNA (Uracil-5-)-methyltransferase LUM42_13565 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LUM42_13565 PF00072 Response regulator receiver domain LUM42_13565 PF00512 His Kinase A (phospho-acceptor) domain LUM42_13565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_13565 PF00672 HAMP domain LUM42_13565 PF01627 Hpt domain LUM42_13570 PF01648 4'-phosphopantetheinyl transferase superfamily LUM42_13575 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LUM42_13580 PF02565 Recombination protein O C terminal LUM42_13580 PF11967 Recombination protein O N terminal LUM42_13585 PF07650 KH domain LUM42_13585 PF01926 50S ribosome-binding GTPase LUM42_13590 PF14622 Ribonuclease-III-like LUM42_13590 PF00035 Double-stranded RNA binding motif LUM42_13595 PF10502 Signal peptidase, peptidase S26 LUM42_13600 PF03144 Elongation factor Tu domain 2 LUM42_13600 PF00009 Elongation factor Tu GTP binding domain LUM42_13600 PF06421 GTP-binding protein LepA C-terminus LUM42_13600 PF00679 Elongation factor G C-terminus LUM42_13610 PF03888 MucB/RseB N-terminal domain LUM42_13610 PF17188 MucB/RseB C-terminal domain LUM42_13615 PF03873 Anti sigma-E protein RseA, C-terminal domain LUM42_13615 PF03872 Anti sigma-E protein RseA, N-terminal domain LUM42_13620 PF04542 Sigma-70 region 2 LUM42_13620 PF08281 Sigma-70, region 4 LUM42_13625 PF00890 FAD binding domain LUM42_13625 PF02910 Fumarate reductase flavoprotein C-term LUM42_13635 PF03937 Flavinator of succinate dehydrogenase LUM42_13655 PF01494 FAD binding domain LUM42_13660 PF01494 FAD binding domain LUM42_13665 PF03695 Uncharacterised protein family (UPF0149) LUM42_13670 PF05164 Cell division protein ZapA LUM42_13680 PF01812 5-formyltetrahydrofolate cyclo-ligase family LUM42_13685 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LUM42_13690 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LUM42_13690 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LUM42_13690 PF01842 ACT domain LUM42_13695 PF10369 Small subunit of acetolactate synthase LUM42_13700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LUM42_13700 PF00205 Thiamine pyrophosphate enzyme, central domain LUM42_13700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LUM42_13705 PF00501 AMP-binding enzyme LUM42_13710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_13710 PF03466 LysR substrate binding domain LUM42_13720 PF01569 PAP2 superfamily LUM42_13730 PF00682 HMGL-like LUM42_13730 PF08502 LeuA allosteric (dimerisation) domain LUM42_13735 PF00180 Isocitrate/isopropylmalate dehydrogenase LUM42_13740 PF00330 Aconitase family (aconitate hydratase) LUM42_13745 PF00694 Aconitase C-terminal domain LUM42_13790 PF00072 Response regulator receiver domain LUM42_13800 PF03171 2OG-Fe(II) oxygenase superfamily LUM42_13800 PF14226 non-haem dioxygenase in morphine synthesis N-terminal LUM42_13815 PF07694 5TMR of 5TMR-LYT LUM42_13815 PF00990 Diguanylate cyclase, GGDEF domain LUM42_13825 PF03739 Lipopolysaccharide export system permease LptF/LptG LUM42_13830 PF03739 Lipopolysaccharide export system permease LptF/LptG LUM42_13835 PF00883 Cytosol aminopeptidase family, catalytic domain LUM42_13835 PF02789 Cytosol aminopeptidase family, N-terminal domain LUM42_13845 PF08264 Anticodon-binding domain of tRNA LUM42_13845 PF10458 Valyl tRNA synthetase tRNA binding arm LUM42_13845 PF00133 tRNA synthetases class I (I, L, M and V) LUM42_13850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LUM42_13850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LUM42_13855 PF00849 RNA pseudouridylate synthase LUM42_13865 PF00271 Helicase conserved C-terminal domain LUM42_13865 PF12137 RNA polymerase recycling family C-terminal LUM42_13865 PF00176 SNF2 family N-terminal domain LUM42_13865 PF18339 RapA N-terminal Tudor like domain 1 LUM42_13865 PF18337 RapA N-terminal Tudor like domain LUM42_13870 PF13638 PIN domain LUM42_13870 PF02562 PhoH-like protein LUM42_13875 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LUM42_13875 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LUM42_13880 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LUM42_13880 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LUM42_13885 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LUM42_13885 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LUM42_13890 PF01042 Endoribonuclease L-PSP LUM42_13895 PF01553 Acyltransferase LUM42_13900 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LUM42_13905 PF01722 BolA-like protein LUM42_13910 PF13466 STAS domain LUM42_13915 PF05494 MlaC protein LUM42_13920 PF02470 MlaD protein LUM42_13925 PF02405 Permease MlaE LUM42_13930 PF00005 ABC transporter LUM42_13935 PF01699 Sodium/calcium exchanger protein LUM42_13940 PF00571 CBS domain LUM42_13940 PF01380 SIS domain LUM42_13955 PF03968 OstA-like protein LUM42_13960 PF00005 ABC transporter LUM42_13960 PF12399 Branched-chain amino acid ATP-binding cassette transporter LUM42_13965 PF00309 Sigma-54 factor, Activator interacting domain (AID) LUM42_13965 PF04963 Sigma-54 factor, core binding domain LUM42_13965 PF04552 Sigma-54, DNA binding domain LUM42_13970 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LUM42_13975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LUM42_13980 PF03668 P-loop ATPase protein family LUM42_13985 PF00381 PTS HPr component phosphorylation site LUM42_13990 PF03448 MgtE intracellular N domain LUM42_13990 PF00571 CBS domain LUM42_13990 PF01769 Divalent cation transporter LUM42_13995 PF01523 Putative modulator of DNA gyrase LUM42_14000 PF04751 Protein of unknown function (DUF615) LUM42_14005 PF00005 ABC transporter LUM42_14010 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_14020 PF02441 Flavoprotein LUM42_14025 PF01225 Mur ligase family, catalytic domain LUM42_14025 PF02875 Mur ligase family, glutamate ligase domain LUM42_14025 PF08245 Mur ligase middle domain LUM42_14030 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LUM42_14035 PF00719 Inorganic pyrophosphatase LUM42_14045 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LUM42_14050 PF04357 TamB, inner membrane protein subunit of TAM complex LUM42_14055 PF17243 POTRA domain TamA domain 1 LUM42_14055 PF07244 Surface antigen variable number repeat LUM42_14055 PF01103 Surface antigen LUM42_14060 PF01625 Peptide methionine sulfoxide reductase LUM42_14065 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LUM42_14080 PF00005 ABC transporter LUM42_14080 PF02687 FtsX-like permease family LUM42_14080 PF12704 MacB-like periplasmic core domain LUM42_14105 PF03600 Citrate transporter LUM42_14105 PF02080 TrkA-C domain LUM42_14110 PF00009 Elongation factor Tu GTP binding domain LUM42_14115 PF01507 Phosphoadenosine phosphosulfate reductase family LUM42_14120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LUM42_14120 PF14824 Sirohaem biosynthesis protein central LUM42_14120 PF10414 Sirohaem synthase dimerisation region LUM42_14125 PF02872 5'-nucleotidase, C-terminal domain LUM42_14125 PF00149 Calcineurin-like phosphoesterase LUM42_14135 PF03880 DbpA RNA binding domain LUM42_14135 PF00270 DEAD/DEAH box helicase LUM42_14135 PF00271 Helicase conserved C-terminal domain LUM42_14140 PF13673 Acetyltransferase (GNAT) domain LUM42_14150 PF04225 Opacity-associated protein A LysM-like domain LUM42_14150 PF08525 Opacity-associated protein A N-terminal motif LUM42_14155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LUM42_14155 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LUM42_14165 PF01196 Ribosomal protein L17 LUM42_14170 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LUM42_14170 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LUM42_14170 PF01000 RNA polymerase Rpb3/RpoA insert domain LUM42_14175 PF01479 S4 domain LUM42_14175 PF00163 Ribosomal protein S4/S9 N-terminal domain LUM42_14180 PF00411 Ribosomal protein S11 LUM42_14185 PF00416 Ribosomal protein S13/S18 LUM42_14190 PF00444 Ribosomal protein L36 LUM42_14195 PF00344 SecY translocase LUM42_14200 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LUM42_14205 PF00327 Ribosomal protein L30p/L7e LUM42_14210 PF00333 Ribosomal protein S5, N-terminal domain LUM42_14210 PF03719 Ribosomal protein S5, C-terminal domain LUM42_14215 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LUM42_14220 PF00347 Ribosomal protein L6 LUM42_14225 PF00410 Ribosomal protein S8 LUM42_14230 PF00253 Ribosomal protein S14p/S29e LUM42_14235 PF00281 Ribosomal protein L5 LUM42_14235 PF00673 ribosomal L5P family C-terminus LUM42_14240 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LUM42_14240 PF00467 KOW motif LUM42_14245 PF00238 Ribosomal protein L14p/L23e LUM42_14250 PF00366 Ribosomal protein S17 LUM42_14255 PF00831 Ribosomal L29 protein LUM42_14260 PF00252 Ribosomal protein L16p/L10e LUM42_14265 PF07650 KH domain LUM42_14265 PF00189 Ribosomal protein S3, C-terminal domain LUM42_14270 PF00237 Ribosomal protein L22p/L17e LUM42_14275 PF00203 Ribosomal protein S19 LUM42_14280 PF00181 Ribosomal Proteins L2, RNA binding domain LUM42_14280 PF03947 Ribosomal Proteins L2, C-terminal domain LUM42_14285 PF00276 Ribosomal protein L23 LUM42_14290 PF00573 Ribosomal protein L4/L1 family LUM42_14295 PF00297 Ribosomal protein L3 LUM42_14300 PF00338 Ribosomal protein S10p/S20e LUM42_14305 PF00588 SpoU rRNA Methylase family LUM42_14305 PF08032 RNA 2'-O ribose methyltransferase substrate binding LUM42_14310 PF00575 S1 RNA binding domain LUM42_14310 PF00773 RNB domain LUM42_14310 PF17876 Cold shock domain LUM42_14310 PF08461 Ribonuclease R winged-helix domain LUM42_14310 PF08206 Ribonuclease B OB domain LUM42_14315 PF11893 Domain of unknown function (DUF3413) LUM42_14315 PF00884 Sulfatase LUM42_14320 PF08238 Sel1 repeat LUM42_14325 PF00709 Adenylosuccinate synthetase LUM42_14330 PF01112 Asparaginase LUM42_14335 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LUM42_14340 PF09526 Probable metal-binding protein (DUF2387) LUM42_14345 PF00999 Sodium/hydrogen exchanger family LUM42_14345 PF02254 TrkA-N domain LUM42_14350 PF02525 Flavodoxin-like fold LUM42_14355 PF00005 ABC transporter LUM42_14355 PF12848 ABC transporter LUM42_14365 PF00561 alpha/beta hydrolase fold LUM42_14370 PF06794 Uncharacterised protein family (UPF0270) LUM42_14375 PF00485 Phosphoribulokinase / Uridine kinase family LUM42_14380 PF13545 Crp-like helix-turn-helix domain LUM42_14380 PF00027 Cyclic nucleotide-binding domain LUM42_14390 PF00171 Aldehyde dehydrogenase family LUM42_14395 PF04958 Arginine N-succinyltransferase beta subunit LUM42_14400 PF00202 Aminotransferase class-III LUM42_14405 PF00117 Glutamine amidotransferase class-I LUM42_14415 PF00579 tRNA synthetases class I (W and Y) LUM42_14420 PF13419 Haloacid dehalogenase-like hydrolase LUM42_14425 PF00834 Ribulose-phosphate 3 epimerase family LUM42_14430 PF02086 D12 class N6 adenine-specific DNA methyltransferase LUM42_14440 PF01761 3-dehydroquinate synthase LUM42_14445 PF01202 Shikimate kinase LUM42_14450 PF11741 AMIN domain LUM42_14450 PF00263 Bacterial type II and III secretion system protein LUM42_14450 PF03958 Bacterial type II/III secretion system short domain LUM42_14450 PF07660 Secretin and TonB N terminus short domain LUM42_14455 PF04351 Pilus assembly protein, PilP LUM42_14475 PF17092 Penicillin-binding protein OB-like domain LUM42_14475 PF00912 Transglycosylase LUM42_14475 PF00905 Penicillin binding protein transpeptidase domain LUM42_14480 PF03466 LysR substrate binding domain LUM42_14480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_14485 PF00462 Glutaredoxin LUM42_14485 PF08534 Redoxin LUM42_14495 PF00206 Lyase LUM42_14495 PF00583 Acetyltransferase (GNAT) family LUM42_14495 PF14698 Argininosuccinate lyase C-terminal LUM42_14500 PF13542 Helix-turn-helix domain of transposase family ISL3 LUM42_14500 PF01610 Transposase LUM42_14500 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LUM42_14505 PF00764 Arginosuccinate synthase LUM42_14510 PF00696 Amino acid kinase family LUM42_14515 PF01118 Semialdehyde dehydrogenase, NAD binding domain LUM42_14515 PF02774 Semialdehyde dehydrogenase, dimerisation domain LUM42_14520 PF07687 Peptidase dimerisation domain LUM42_14520 PF01546 Peptidase family M20/M25/M40 LUM42_14525 PF00311 Phosphoenolpyruvate carboxylase LUM42_14535 PF06426 Serine acetyltransferase, N-terminal LUM42_14535 PF00132 Bacterial transferase hexapeptide (six repeats) LUM42_14540 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LUM42_14540 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LUM42_14545 PF02556 Preprotein translocase subunit SecB LUM42_14550 PF00581 Rhodanese-like domain LUM42_14555 PF00152 tRNA synthetases class II (D, K and N) LUM42_14560 PF02910 Fumarate reductase flavoprotein C-term LUM42_14560 PF00890 FAD binding domain LUM42_14565 PF13085 2Fe-2S iron-sulfur cluster binding domain LUM42_14565 PF13183 4Fe-4S dicluster domain LUM42_14570 PF02300 Fumarate reductase subunit C LUM42_14575 PF02313 Fumarate reductase subunit D LUM42_14580 PF08207 Elongation factor P (EF-P) KOW-like domain LUM42_14580 PF09285 Elongation factor P, C-terminal LUM42_14580 PF01132 Elongation factor P (EF-P) OB domain LUM42_14585 PF04055 Radical SAM superfamily LUM42_14590 PF02308 MgtC family LUM42_14600 PF00005 ABC transporter LUM42_14605 PF00118 TCP-1/cpn60 chaperonin family LUM42_14610 PF00166 Chaperonin 10 Kd subunit LUM42_14635 PF00121 Triosephosphate isomerase LUM42_14640 PF01554 MatE LUM42_14645 PF03737 Aldolase/RraA LUM42_14650 PF01040 UbiA prenyltransferase family LUM42_14655 PF10431 C-terminal, D2-small domain, of ClpB protein LUM42_14655 PF07724 AAA domain (Cdc48 subfamily) LUM42_14655 PF00004 ATPase family associated with various cellular activities (AAA) LUM42_14660 PF00227 Proteasome subunit LUM42_14670 PF00356 Bacterial regulatory proteins, lacI family LUM42_14675 PF18074 Primosomal protein N C-terminal domain LUM42_14675 PF17764 3′ DNA-binding domain (3′BD) LUM42_14675 PF00271 Helicase conserved C-terminal domain LUM42_14675 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LUM42_14675 PF00270 DEAD/DEAH box helicase LUM42_14680 PF01197 Ribosomal protein L31 LUM42_14685 PF00390 Malic enzyme, N-terminal domain LUM42_14685 PF03949 Malic enzyme, NAD binding domain LUM42_14690 PF01340 Met Apo-repressor, MetJ LUM42_14695 PF01053 Cys/Met metabolism PLP-dependent enzyme LUM42_14700 PF00696 Amino acid kinase family LUM42_14700 PF03447 Homoserine dehydrogenase, NAD binding domain LUM42_14700 PF00742 Homoserine dehydrogenase LUM42_14705 PF02219 Methylenetetrahydrofolate reductase LUM42_14710 PF06005 Cell division protein ZapB LUM42_14715 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LUM42_14720 PF00365 Phosphofructokinase LUM42_14725 PF01545 Cation efflux family LUM42_14725 PF16916 Dimerisation domain of Zinc Transporter LUM42_14735 PF00486 Transcriptional regulatory protein, C terminal LUM42_14735 PF00072 Response regulator receiver domain LUM42_14740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_14740 PF16527 Two-component sensor protein CpxA, periplasmic domain LUM42_14740 PF00672 HAMP domain LUM42_14740 PF00512 His Kinase A (phospho-acceptor) domain LUM42_14745 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LUM42_14745 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LUM42_14750 PF00588 SpoU rRNA Methylase family LUM42_14755 PF04186 FxsA cytoplasmic membrane protein LUM42_14760 PF00990 Diguanylate cyclase, GGDEF domain LUM42_14765 PF10415 Fumarase C C-terminus LUM42_14765 PF00206 Lyase LUM42_14770 PF03605 Anaerobic c4-dicarboxylate membrane transporter LUM42_14775 PF03606 C4-dicarboxylate anaerobic carrier LUM42_14785 PF00696 Amino acid kinase family LUM42_14790 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LUM42_14790 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LUM42_14795 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LUM42_14795 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LUM42_14800 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LUM42_14800 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LUM42_14805 PF01316 Arginine repressor, DNA binding domain LUM42_14805 PF02863 Arginine repressor, C-terminal domain LUM42_14810 PF02683 Cytochrome C biogenesis protein transmembrane region LUM42_14810 PF11412 Disulphide bond corrector protein DsbC LUM42_14815 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LUM42_14815 PF11852 Domain of unknown function (DUF3372) LUM42_14815 PF03714 Bacterial pullanase-associated domain LUM42_14815 PF18494 Pullulanase Ins domain LUM42_14815 PF17967 Pullulanase N2 domain LUM42_14820 PF00196 Bacterial regulatory proteins, luxR family LUM42_14820 PF00072 Response regulator receiver domain LUM42_14825 PF02080 TrkA-C domain LUM42_14825 PF00999 Sodium/hydrogen exchanger family LUM42_14825 PF03471 Transporter associated domain LUM42_14835 PF00474 Sodium:solute symporter family LUM42_14840 PF02592 Putative vitamin uptake transporter LUM42_14845 PF00625 Guanylate kinase LUM42_14850 PF01192 RNA polymerase Rpb6 LUM42_14855 PF04607 Region found in RelA / SpoT proteins LUM42_14855 PF13291 ACT domain LUM42_14855 PF02824 TGS domain LUM42_14860 PF13542 Helix-turn-helix domain of transposase family ISL3 LUM42_14860 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LUM42_14860 PF01610 Transposase LUM42_14865 PF00588 SpoU rRNA Methylase family LUM42_14865 PF12105 SpoU, rRNA methylase, C-terminal LUM42_14870 PF17191 RecG wedge domain LUM42_14870 PF00271 Helicase conserved C-terminal domain LUM42_14870 PF00270 DEAD/DEAH box helicase LUM42_14875 PF00860 Permease family LUM42_14880 PF00512 His Kinase A (phospho-acceptor) domain LUM42_14880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_14880 PF00672 HAMP domain LUM42_14885 PF00072 Response regulator receiver domain LUM42_14885 PF00486 Transcriptional regulatory protein, C terminal LUM42_14890 PF01081 KDPG and KHG aldolase LUM42_14895 PF02447 GntP family permease LUM42_14900 PF01202 Shikimate kinase LUM42_14905 PF00920 Dehydratase family LUM42_14910 PF00356 Bacterial regulatory proteins, lacI family LUM42_14910 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LUM42_14915 PF03449 Transcription elongation factor, N-terminal LUM42_14915 PF01272 Transcription elongation factor, GreA/GreB, C-term LUM42_14925 PF16921 Tex protein YqgF-like domain LUM42_14925 PF00575 S1 RNA binding domain LUM42_14925 PF17674 HHH domain LUM42_14925 PF09371 Tex-like protein N-terminal domain LUM42_14935 PF00561 alpha/beta hydrolase fold LUM42_14940 PF00156 Phosphoribosyl transferase domain LUM42_14945 PF01521 Iron-sulphur cluster biosynthesis LUM42_14945 PF01106 NifU-like domain LUM42_14950 PF00293 NUDIX domain LUM42_14955 PF00459 Inositol monophosphatase family LUM42_14960 PF01203 Type II secretion system (T2SS), protein N LUM42_14965 PF04612 Type II secretion system (T2SS), protein M LUM42_14970 PF12693 GspL periplasmic domain LUM42_14970 PF05134 Type II secretion system (T2SS), protein L LUM42_14975 PF03934 Type II secretion system (T2SS), protein K LUM42_14980 PF07963 Prokaryotic N-terminal methylation motif LUM42_14980 PF11612 Type II secretion system (T2SS), protein J LUM42_14985 PF07963 Prokaryotic N-terminal methylation motif LUM42_14985 PF02501 Type II secretion system (T2SS), protein I LUM42_14990 PF12019 Type II transport protein GspH LUM42_14995 PF07963 Prokaryotic N-terminal methylation motif LUM42_14995 PF08334 Type II secretion system (T2SS), protein G LUM42_15000 PF00482 Type II secretion system (T2SS), protein F LUM42_15005 PF00437 Type II/IV secretion system protein LUM42_15010 PF00263 Bacterial type II and III secretion system protein LUM42_15010 PF03958 Bacterial type II/III secretion system short domain LUM42_15015 PF11356 Type II secretion system protein C LUM42_15020 PF01479 S4 domain LUM42_15025 PF01430 Hsp33 protein LUM42_15030 PF01293 Phosphoenolpyruvate carboxykinase LUM42_15035 PF05170 AsmA family LUM42_15040 PF09500 Putative thioesterase (yiiD_Cterm) LUM42_15040 PF00583 Acetyltransferase (GNAT) family LUM42_15045 PF02580 D-Tyr-tRNA(Tyr) deacylase LUM42_15050 PF03631 Virulence factor BrkB LUM42_15065 PF00679 Elongation factor G C-terminus LUM42_15065 PF00009 Elongation factor Tu GTP binding domain LUM42_15065 PF03144 Elongation factor Tu domain 2 LUM42_15070 PF00120 Glutamine synthetase, catalytic domain LUM42_15070 PF03951 Glutamine synthetase, beta-Grasp domain LUM42_15080 PF00512 His Kinase A (phospho-acceptor) domain LUM42_15080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_15080 PF00989 PAS fold LUM42_15085 PF02954 Bacterial regulatory protein, Fis family LUM42_15085 PF00072 Response regulator receiver domain LUM42_15085 PF00158 Sigma-54 interaction domain LUM42_15090 PF13188 PAS domain LUM42_15090 PF00563 EAL domain LUM42_15090 PF00990 Diguanylate cyclase, GGDEF domain LUM42_15090 PF03707 Bacterial signalling protein N terminal repeat LUM42_15095 PF00962 Adenosine/AMP deaminase LUM42_15145 PF01177 Asp/Glu/Hydantoin racemase LUM42_15155 PF00593 TonB dependent receptor LUM42_15155 PF07715 TonB-dependent Receptor Plug Domain LUM42_15160 PF05958 tRNA (Uracil-5-)-methyltransferase LUM42_15170 PF00440 Bacterial regulatory proteins, tetR family LUM42_15175 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_15175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LUM42_15180 PF01554 MatE LUM42_15190 PF00717 Peptidase S24-like LUM42_15190 PF01726 LexA DNA binding domain LUM42_15195 PF01219 Prokaryotic diacylglycerol kinase LUM42_15200 PF01553 Acyltransferase LUM42_15205 PF01040 UbiA prenyltransferase family LUM42_15210 PF04345 Chorismate lyase LUM42_15215 PF03748 Flagellar basal body-associated protein FliL LUM42_15220 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LUM42_15220 PF01694 Rhomboid family LUM42_15225 PF00581 Rhodanese-like domain LUM42_15230 PF04545 Sigma-70, region 4 LUM42_15230 PF04542 Sigma-70 region 2 LUM42_15230 PF00140 Sigma-70 factor, region 1.2 LUM42_15235 PF18075 FtsX extracellular domain LUM42_15240 PF00005 ABC transporter LUM42_15245 PF00448 SRP54-type protein, GTPase domain LUM42_15245 PF02881 SRP54-type protein, helical bundle domain LUM42_15260 PF01914 MarC family integral membrane protein LUM42_15290 PF00210 Ferritin-like domain LUM42_15305 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LUM42_15305 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LUM42_15310 PF01022 Bacterial regulatory protein, arsR family LUM42_15315 PF08668 HDOD domain LUM42_15315 PF00563 EAL domain LUM42_15320 PF01810 LysE type translocator LUM42_15325 PF12146 Serine aminopeptidase, S33 LUM42_15345 PF03942 DTW domain LUM42_15350 PF00990 Diguanylate cyclase, GGDEF domain LUM42_15350 PF00563 EAL domain LUM42_15350 PF10442 FIST C domain LUM42_15350 PF08495 FIST N domain LUM42_15355 PF13419 Haloacid dehalogenase-like hydrolase LUM42_15360 PF02899 Phage integrase, N-terminal SAM-like domain LUM42_15360 PF00589 Phage integrase family LUM42_15365 PF04340 Protein of unknown function, DUF484 LUM42_15370 PF01678 Diaminopimelate epimerase LUM42_15375 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LUM42_15375 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LUM42_15385 PF01491 Frataxin-like domain LUM42_15390 PF12633 Adenylate cyclase NT domain LUM42_15390 PF01295 Adenylate cyclase, class-I LUM42_15395 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LUM42_15395 PF03900 Porphobilinogen deaminase, C-terminal domain LUM42_15400 PF02602 Uroporphyrinogen-III synthase HemD LUM42_15405 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LUM42_15410 PF07219 HemY protein N-terminus LUM42_15410 PF07719 Tetratricopeptide repeat LUM42_15415 PF06969 HemN C-terminal domain LUM42_15415 PF04055 Radical SAM superfamily LUM42_15420 PF10675 Protein of unknown function (DUF2489) LUM42_15425 PF04220 Der GTPase activator (YihI) LUM42_15435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LUM42_15440 PF01926 50S ribosome-binding GTPase LUM42_15445 PF01367 5'-3' exonuclease, C-terminal SAM fold LUM42_15445 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LUM42_15445 PF00476 DNA polymerase family A LUM42_15445 PF01612 3'-5' exonuclease LUM42_15455 PF00490 Delta-aminolevulinic acid dehydratase LUM42_15460 PF01026 TatD related DNase LUM42_15465 PF00902 Sec-independent protein translocase protein (TatC) LUM42_15470 PF02416 mttA/Hcf106 family LUM42_15475 PF02416 mttA/Hcf106 family LUM42_15480 PF03109 ABC1 family LUM42_15485 PF02036 SCP-2 sterol transfer family LUM42_15490 PF01209 ubiE/COQ5 methyltransferase family LUM42_15495 PF02646 RmuC family LUM42_15510 PF02311 AraC-like ligand binding domain LUM42_15510 PF12833 Helix-turn-helix domain LUM42_15520 PF11762 L-arabinose isomerase C-terminal domain LUM42_15520 PF02610 L-arabinose isomerase LUM42_15525 PF00596 Class II Aldolase and Adducin N-terminal domain LUM42_15530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LUM42_15530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LUM42_15535 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LUM42_15540 PF00005 ABC transporter LUM42_15545 PF02653 Branched-chain amino acid transport system / permease component LUM42_15550 PF13407 Periplasmic binding protein domain LUM42_15555 PF00005 ABC transporter LUM42_15560 PF02653 Branched-chain amino acid transport system / permease component LUM42_15565 PF02653 Branched-chain amino acid transport system / permease component LUM42_15575 PF10625 Universal stress protein B (UspB) LUM42_15580 PF00210 Ferritin-like domain LUM42_15585 PF00582 Universal stress protein family LUM42_15590 PF00892 EamA-like transporter family LUM42_15600 PF04445 Putative SAM-dependent methyltransferase LUM42_15605 PF00990 Diguanylate cyclase, GGDEF domain LUM42_15605 PF00563 EAL domain LUM42_15605 PF08448 PAS fold LUM42_15610 PF01037 Lrp/AsnC ligand binding domain LUM42_15620 PF07690 Major Facilitator Superfamily LUM42_15625 PF03466 LysR substrate binding domain LUM42_15625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_15630 PF01321 Creatinase/Prolidase N-terminal domain LUM42_15630 PF00557 Metallopeptidase family M24 LUM42_15630 PF01321 Creatinase/Prolidase N-terminal domain LUM42_15630 PF00557 Metallopeptidase family M24 LUM42_15635 PF13977 BetI-type transcriptional repressor, C-terminal LUM42_15635 PF00440 Bacterial regulatory proteins, tetR family LUM42_15640 PF00171 Aldehyde dehydrogenase family LUM42_15645 PF05199 GMC oxidoreductase LUM42_15645 PF00732 GMC oxidoreductase LUM42_15650 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LUM42_15655 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_15660 PF00571 CBS domain LUM42_15660 PF00005 ABC transporter LUM42_15665 PF06968 Biotin and Thiamin Synthesis associated domain LUM42_15665 PF04055 Radical SAM superfamily LUM42_15670 PF05690 Thiazole biosynthesis protein ThiG LUM42_15680 PF00899 ThiF family LUM42_15685 PF02581 Thiamine monophosphate synthase LUM42_15690 PF13667 ThiC-associated domain LUM42_15690 PF01964 Radical SAM ThiC family LUM42_15695 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LUM42_15700 PF07731 Multicopper oxidase LUM42_15700 PF07732 Multicopper oxidase LUM42_15700 PF00394 Multicopper oxidase LUM42_15770 PF12724 Flavodoxin domain LUM42_15775 PF02386 Cation transport protein LUM42_15780 PF01205 Uncharacterized protein family UPF0029 LUM42_15780 PF09186 Domain of unknown function (DUF1949) LUM42_15785 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LUM42_15785 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LUM42_15785 PF00378 Enoyl-CoA hydratase/isomerase LUM42_15790 PF02803 Thiolase, C-terminal domain LUM42_15790 PF00108 Thiolase, N-terminal domain LUM42_15795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_15795 PF03466 LysR substrate binding domain LUM42_15800 PF07690 Major Facilitator Superfamily LUM42_15805 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_15810 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_15815 PF12804 MobA-like NTP transferase domain LUM42_15815 PF14602 Hexapeptide repeat of succinyl-transferase LUM42_15815 PF00132 Bacterial transferase hexapeptide (six repeats) LUM42_15820 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LUM42_15820 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LUM42_15825 PF02874 ATP synthase alpha/beta family, beta-barrel domain LUM42_15825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LUM42_15830 PF00231 ATP synthase LUM42_15835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LUM42_15835 PF00306 ATP synthase alpha/beta chain, C terminal domain LUM42_15835 PF02874 ATP synthase alpha/beta family, beta-barrel domain LUM42_15840 PF00213 ATP synthase delta (OSCP) subunit LUM42_15845 PF00430 ATP synthase B/B' CF(0) LUM42_15850 PF00137 ATP synthase subunit C LUM42_15855 PF00119 ATP synthase A chain LUM42_15860 PF03899 ATP synthase I chain LUM42_15865 PF17762 HTH domain found in ParB protein LUM42_15865 PF02195 ParB-like nuclease domain LUM42_15870 PF13614 AAA domain LUM42_15875 PF02527 rRNA small subunit methyltransferase G LUM42_15880 PF01134 Glucose inhibited division protein A LUM42_15880 PF13932 GidA associated domain LUM42_15885 PF00258 Flavodoxin LUM42_15890 PF01926 50S ribosome-binding GTPase LUM42_15890 PF12631 MnmE helical domain LUM42_15890 PF10396 GTP-binding protein TrmE N-terminus LUM42_15895 PF02096 60Kd inner membrane protein LUM42_15895 PF14849 YidC periplasmic domain LUM42_15900 PF01809 Putative membrane protein insertion efficiency factor LUM42_15905 PF00825 Ribonuclease P LUM42_15910 PF00468 Ribosomal protein L34 LUM42_15915 PF00005 ABC transporter LUM42_15920 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_15925 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_15970 PF01609 Transposase DDE domain LUM42_15975 PF02522 Aminoglycoside 3-N-acetyltransferase LUM42_16020 PF01343 Peptidase family S49 LUM42_16060 PF00565 Staphylococcal nuclease homologue LUM42_16065 PF00216 Bacterial DNA-binding protein LUM42_16125 PF00004 ATPase family associated with various cellular activities (AAA) LUM42_16125 PF17862 AAA+ lid domain LUM42_16125 PF01434 Peptidase family M41 LUM42_16170 PF04335 VirB8 protein LUM42_16180 PF03743 Bacterial conjugation TrbI-like protein LUM42_16185 PF00437 Type II/IV secretion system protein LUM42_16190 PF13091 PLD-like domain LUM42_16190 PF13396 Phospholipase_D-nuclease N-terminal LUM42_16210 PF00440 Bacterial regulatory proteins, tetR family LUM42_16210 PF02909 Tetracyclin repressor-like, C-terminal domain LUM42_16215 PF07690 Major Facilitator Superfamily LUM42_16220 PF08240 Alcohol dehydrogenase GroES-like domain LUM42_16220 PF00107 Zinc-binding dehydrogenase LUM42_16230 PF13610 DDE domain LUM42_16240 PF13610 DDE domain LUM42_16250 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ LUM42_16255 PF02796 Helix-turn-helix domain of resolvase LUM42_16255 PF00239 Resolvase, N terminal domain LUM42_16260 PF02796 Helix-turn-helix domain of resolvase LUM42_16260 PF00239 Resolvase, N terminal domain LUM42_16280 PF07690 Major Facilitator Superfamily LUM42_16285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_16285 PF03466 LysR substrate binding domain LUM42_16300 PF00809 Pterin binding enzyme LUM42_16310 PF13614 AAA domain LUM42_16315 PF02195 ParB-like nuclease domain LUM42_16315 PF08535 KorB domain LUM42_16315 PF06613 KorB C-terminal beta-barrel domain LUM42_16365 PF00145 C-5 cytosine-specific DNA methylase LUM42_16395 PF01131 DNA topoisomerase LUM42_16395 PF01751 Toprim domain LUM42_16445 PF00872 Transposase, Mutator family LUM42_16495 PF13098 Thioredoxin-like domain LUM42_16495 PF10411 Disulfide bond isomerase protein N-terminus LUM42_16520 PF08448 PAS fold LUM42_16520 PF08447 PAS fold LUM42_16520 PF00990 Diguanylate cyclase, GGDEF domain LUM42_16520 PF00563 EAL domain LUM42_16525 PF06834 TraU protein LUM42_16555 PF07728 AAA domain (dynein-related subfamily) LUM42_16555 PF08406 CbbQ/NirQ/NorQ C-terminal LUM42_16565 PF00436 Single-strand binding protein family LUM42_16610 PF00111 2Fe-2S iron-sulfur cluster binding domain LUM42_16745 PF13700 Domain of unknown function (DUF4158) LUM42_16745 PF01526 Tn3 transposase DDE domain LUM42_16750 PF02796 Helix-turn-helix domain of resolvase LUM42_16750 PF00239 Resolvase, N terminal domain LUM42_16755 PF13495 Phage integrase, N-terminal SAM-like domain LUM42_16755 PF00589 Phage integrase family LUM42_16765 PF00905 Penicillin binding protein transpeptidase domain LUM42_16770 PF00132 Bacterial transferase hexapeptide (six repeats) LUM42_16780 PF00893 Small Multidrug Resistance protein LUM42_16785 PF00809 Pterin binding enzyme LUM42_16800 PF13599 Pentapeptide repeats (9 copies) LUM42_16805 PF01844 HNH endonuclease LUM42_16830 PF00303 Thymidylate synthase LUM42_16835 PF07883 Cupin domain LUM42_16835 PF01381 Helix-turn-helix LUM42_16845 PF00809 Pterin binding enzyme LUM42_16860 PF13610 DDE domain LUM42_16875 PF01636 Phosphotransferase enzyme family LUM42_16885 PF01548 Transposase LUM42_16885 PF02371 Transposase IS116/IS110/IS902 family LUM42_16890 PF13700 Domain of unknown function (DUF4158) LUM42_16890 PF01526 Tn3 transposase DDE domain LUM42_16895 PF02796 Helix-turn-helix domain of resolvase LUM42_16895 PF00239 Resolvase, N terminal domain LUM42_16900 PF00563 EAL domain LUM42_16900 PF03707 Bacterial signalling protein N terminal repeat LUM42_16900 PF00990 Diguanylate cyclase, GGDEF domain LUM42_16905 PF05052 MerE protein LUM42_16910 PF13411 MerR HTH family regulatory protein LUM42_16915 PF12324 Helix-turn-helix domain of alkylmercury lyase LUM42_16915 PF03243 Alkylmercury lyase LUM42_16920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LUM42_16920 PF00403 Heavy-metal-associated domain LUM42_16920 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_16925 PF00403 Heavy-metal-associated domain LUM42_16930 PF02411 MerT mercuric transport protein LUM42_16935 PF00376 MerR family regulatory protein LUM42_16935 PF09278 MerR, DNA binding LUM42_16980 PF00589 Phage integrase family LUM42_16980 PF02899 Phage integrase, N-terminal SAM-like domain LUM42_17015 PF06122 Conjugative relaxosome accessory transposon protein LUM42_17070 PF00196 Bacterial regulatory proteins, luxR family LUM42_17070 PF17874 MalT-like TPR region LUM42_17075 PF10928 Protein of unknown function (DUF2810) LUM42_17080 PF01040 UbiA prenyltransferase family LUM42_17085 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LUM42_17090 PF00510 Cytochrome c oxidase subunit III LUM42_17095 PF00115 Cytochrome C and Quinol oxidase polypeptide I LUM42_17100 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LUM42_17100 PF06481 COX Aromatic Rich Motif LUM42_17110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_17110 PF00672 HAMP domain LUM42_17110 PF17200 Single Cache domain 2 LUM42_17115 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LUM42_17115 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LUM42_17120 PF03466 LysR substrate binding domain LUM42_17120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_17130 PF01709 Transcriptional regulator LUM42_17150 PF18607 ParA helix turn helix domain LUM42_17150 PF13614 AAA domain LUM42_17155 PF08775 ParB family LUM42_17155 PF02195 ParB-like nuclease domain LUM42_17160 PF13416 Bacterial extracellular solute-binding protein LUM42_17165 PF13718 GNAT acetyltransferase 2 LUM42_17165 PF05127 Helicase LUM42_17175 PF00072 Response regulator receiver domain LUM42_17180 PF01627 Hpt domain LUM42_17180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_17180 PF02895 Signal transducing histidine kinase, homodimeric domain LUM42_17180 PF09078 CheY binding LUM42_17180 PF01584 CheW-like domain LUM42_17185 PF01584 CheW-like domain LUM42_17190 PF01584 CheW-like domain LUM42_17195 PF00672 HAMP domain LUM42_17195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_17195 PF02203 Tar ligand binding domain homologue LUM42_17200 PF01739 CheR methyltransferase, SAM binding domain LUM42_17200 PF03705 CheR methyltransferase, all-alpha domain LUM42_17205 PF03975 CheD chemotactic sensory transduction LUM42_17210 PF00072 Response regulator receiver domain LUM42_17210 PF01339 CheB methylesterase LUM42_17215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_17215 PF00672 HAMP domain LUM42_17215 PF02743 Cache domain LUM42_17225 PF00072 Response regulator receiver domain LUM42_17225 PF00486 Transcriptional regulatory protein, C terminal LUM42_17235 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LUM42_17235 PF01243 Pyridoxamine 5'-phosphate oxidase LUM42_17240 PF00196 Bacterial regulatory proteins, luxR family LUM42_17240 PF00072 Response regulator receiver domain LUM42_17245 PF03781 Sulfatase-modifying factor enzyme 1 LUM42_17255 PF12833 Helix-turn-helix domain LUM42_17260 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LUM42_17260 PF14850 DNA-binding domain of Proline dehydrogenase LUM42_17260 PF01619 Proline dehydrogenase LUM42_17260 PF00171 Aldehyde dehydrogenase family LUM42_17270 PF00474 Sodium:solute symporter family LUM42_17280 PF02743 Cache domain LUM42_17280 PF00672 HAMP domain LUM42_17280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_17285 PF01037 Lrp/AsnC ligand binding domain LUM42_17290 PF00171 Aldehyde dehydrogenase family LUM42_17295 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LUM42_17300 PF00271 Helicase conserved C-terminal domain LUM42_17300 PF00270 DEAD/DEAH box helicase LUM42_17310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_17310 PF03466 LysR substrate binding domain LUM42_17315 PF08241 Methyltransferase domain LUM42_17335 PF01266 FAD dependent oxidoreductase LUM42_17350 PF09278 MerR, DNA binding LUM42_17350 PF00376 MerR family regulatory protein LUM42_17355 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LUM42_17360 PF00266 Aminotransferase class-V LUM42_17365 PF01037 Lrp/AsnC ligand binding domain LUM42_17370 PF02447 GntP family permease LUM42_17375 PF01261 Xylose isomerase-like TIM barrel LUM42_17380 PF00596 Class II Aldolase and Adducin N-terminal domain LUM42_17385 PF17042 Nucleotide-binding C-terminal domain LUM42_17385 PF07005 Sugar-binding N-terminal domain LUM42_17390 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LUM42_17390 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LUM42_17395 PF08220 DeoR-like helix-turn-helix domain LUM42_17395 PF00455 DeoR C terminal sensor domain LUM42_17400 PF13426 PAS domain LUM42_17400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_17400 PF08447 PAS fold LUM42_17405 PF01266 FAD dependent oxidoreductase LUM42_17410 PF03466 LysR substrate binding domain LUM42_17410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_17415 PF13460 NAD(P)H-binding LUM42_17420 PF00893 Small Multidrug Resistance protein LUM42_17425 PF12833 Helix-turn-helix domain LUM42_17425 PF02311 AraC-like ligand binding domain LUM42_17430 PF00857 Isochorismatase family LUM42_17435 PF12833 Helix-turn-helix domain LUM42_17450 PF03992 Antibiotic biosynthesis monooxygenase LUM42_17455 PF03733 Inner membrane component domain LUM42_17465 PF00155 Aminotransferase class I and II LUM42_17465 PF00392 Bacterial regulatory proteins, gntR family LUM42_17470 PF00990 Diguanylate cyclase, GGDEF domain LUM42_17470 PF07694 5TMR of 5TMR-LYT LUM42_17485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_17485 PF03466 LysR substrate binding domain LUM42_17490 PF00106 short chain dehydrogenase LUM42_17495 PF03466 LysR substrate binding domain LUM42_17495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_17500 PF11975 Family 4 glycosyl hydrolase C-terminal domain LUM42_17500 PF02056 Family 4 glycosyl hydrolase LUM42_17505 PF03466 LysR substrate binding domain LUM42_17505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_17510 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LUM42_17520 PF13599 Pentapeptide repeats (9 copies) LUM42_17525 PF01844 HNH endonuclease LUM42_17555 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_17565 PF00132 Bacterial transferase hexapeptide (six repeats) LUM42_17570 PF07733 Bacterial DNA polymerase III alpha NTPase domain LUM42_17570 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LUM42_17570 PF14579 Helix-hairpin-helix motif LUM42_17570 PF02811 PHP domain LUM42_17570 PF00929 Exonuclease LUM42_17585 PF00012 Hsp70 protein LUM42_17590 PF03099 Biotin/lipoate A/B protein ligase family LUM42_17590 PF10437 Bacterial lipoate protein ligase C-terminus LUM42_17595 PF00384 Molybdopterin oxidoreductase LUM42_17595 PF01568 Molydopterin dinucleotide binding domain LUM42_17595 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LUM42_17600 PF13247 4Fe-4S dicluster domain LUM42_17600 PF12800 4Fe-4S binding domain LUM42_17605 PF04976 DMSO reductase anchor subunit (DmsC) LUM42_17610 PF02613 Nitrate reductase delta subunit LUM42_17615 PF00037 4Fe-4S binding domain LUM42_17615 PF12838 4Fe-4S dicluster domain LUM42_17635 PF00465 Iron-containing alcohol dehydrogenase LUM42_17640 PF02733 Dak1 domain LUM42_17645 PF02734 DAK2 domain LUM42_17650 PF02896 PEP-utilising enzyme, TIM barrel domain LUM42_17650 PF05524 PEP-utilising enzyme, N-terminal LUM42_17650 PF00391 PEP-utilising enzyme, mobile domain LUM42_17655 PF02954 Bacterial regulatory protein, Fis family LUM42_17655 PF00989 PAS fold LUM42_17655 PF00158 Sigma-54 interaction domain LUM42_17660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LUM42_17665 PF05068 Mannitol repressor LUM42_17670 PF01232 Mannitol dehydrogenase Rossmann domain LUM42_17670 PF08125 Mannitol dehydrogenase C-terminal domain LUM42_17675 PF02378 Phosphotransferase system, EIIC LUM42_17675 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LUM42_17675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LUM42_17680 PF01551 Peptidase family M23 LUM42_17680 PF04225 Opacity-associated protein A LysM-like domain LUM42_17690 PF02225 PA domain LUM42_17690 PF04389 Peptidase family M28 LUM42_17695 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LUM42_17700 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LUM42_17700 PF13542 Helix-turn-helix domain of transposase family ISL3 LUM42_17700 PF01610 Transposase LUM42_17720 PF03466 LysR substrate binding domain LUM42_17720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_17725 PF07969 Amidohydrolase family LUM42_17730 PF07681 DoxX LUM42_17735 PF12833 Helix-turn-helix domain LUM42_17735 PF00730 HhH-GPD superfamily base excision DNA repair protein LUM42_17735 PF06029 AlkA N-terminal domain LUM42_17735 PF02805 Metal binding domain of Ada LUM42_17740 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LUM42_17740 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LUM42_17750 PF03600 Citrate transporter LUM42_17755 PF00375 Sodium:dicarboxylate symporter family LUM42_17760 PF07883 Cupin domain LUM42_17760 PF12833 Helix-turn-helix domain LUM42_17770 PF00561 alpha/beta hydrolase fold LUM42_17780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_17780 PF00529 HlyD membrane-fusion protein of T1SS LUM42_17785 PF01047 MarR family LUM42_17790 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_17795 PF00155 Aminotransferase class I and II LUM42_17800 PF03466 LysR substrate binding domain LUM42_17800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_17805 PF02001 Protein of unknown function DUF134 LUM42_17815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_17815 PF03466 LysR substrate binding domain LUM42_17820 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LUM42_17835 PF07715 TonB-dependent Receptor Plug Domain LUM42_17835 PF00593 TonB dependent receptor LUM42_17840 PF01497 Periplasmic binding protein LUM42_17845 PF01032 FecCD transport family LUM42_17850 PF01032 FecCD transport family LUM42_17855 PF00005 ABC transporter LUM42_17865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_17865 PF03466 LysR substrate binding domain LUM42_17880 PF00557 Metallopeptidase family M24 LUM42_17885 PF00117 Glutamine amidotransferase class-I LUM42_17885 PF00958 GMP synthase C terminal domain LUM42_17885 PF03352 Methyladenine glycosylase LUM42_17885 PF13302 Acetyltransferase (GNAT) domain LUM42_17885 PF13673 Acetyltransferase (GNAT) domain LUM42_17895 PF01844 HNH endonuclease LUM42_17910 PF05656 Protein of unknown function (DUF805) LUM42_17925 PF00291 Pyridoxal-phosphate dependent enzyme LUM42_17930 PF02627 Carboxymuconolactone decarboxylase family LUM42_17940 PF00391 PEP-utilising enzyme, mobile domain LUM42_17940 PF02896 PEP-utilising enzyme, TIM barrel domain LUM42_17940 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LUM42_17945 PF03618 Kinase/pyrophosphorylase LUM42_17955 PF01070 FMN-dependent dehydrogenase LUM42_17960 PF02652 L-lactate permease LUM42_17965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_17965 PF03466 LysR substrate binding domain LUM42_17970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LUM42_17970 PF00005 ABC transporter LUM42_17980 PF13654 AAA domain LUM42_17980 PF05362 Lon protease (S16) C-terminal proteolytic domain LUM42_17985 PF00672 HAMP domain LUM42_17985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_17985 PF12729 Four helix bundle sensory module for signal transduction LUM42_17990 PF07690 Major Facilitator Superfamily LUM42_17995 PF00924 Mechanosensitive ion channel LUM42_18000 PF02254 TrkA-N domain LUM42_18000 PF02080 TrkA-C domain LUM42_18005 PF02386 Cation transport protein LUM42_18015 PF06865 Pyrimidine/purine nucleoside phosphorylase LUM42_18025 PF07690 Major Facilitator Superfamily LUM42_18035 PF04717 Type VI secretion system, phage-baseplate injector LUM42_18035 PF06715 Gp5 C-terminal repeat (3 copies) LUM42_18070 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LUM42_18090 PF13737 Transposase DDE domain LUM42_18105 PF10431 C-terminal, D2-small domain, of ClpB protein LUM42_18105 PF07724 AAA domain (Cdc48 subfamily) LUM42_18105 PF17871 AAA lid domain LUM42_18105 PF00004 ATPase family associated with various cellular activities (AAA) LUM42_18145 PF00672 HAMP domain LUM42_18145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_18145 PF00512 His Kinase A (phospho-acceptor) domain LUM42_18150 PF00072 Response regulator receiver domain LUM42_18150 PF00486 Transcriptional regulatory protein, C terminal LUM42_18155 PF02678 Pirin LUM42_18155 PF05726 Pirin C-terminal cupin domain LUM42_18165 PF00990 Diguanylate cyclase, GGDEF domain LUM42_18165 PF00563 EAL domain LUM42_18165 PF03707 Bacterial signalling protein N terminal repeat LUM42_18170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_18170 PF03466 LysR substrate binding domain LUM42_18190 PF00990 Diguanylate cyclase, GGDEF domain LUM42_18190 PF03707 Bacterial signalling protein N terminal repeat LUM42_18190 PF00563 EAL domain LUM42_18200 PF01610 Transposase LUM42_18200 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LUM42_18200 PF13542 Helix-turn-helix domain of transposase family ISL3 LUM42_18215 PF00990 Diguanylate cyclase, GGDEF domain LUM42_18225 PF01047 MarR family LUM42_18230 PF04237 YjbR LUM42_18235 PF00072 Response regulator receiver domain LUM42_18235 PF01584 CheW-like domain LUM42_18265 PF00535 Glycosyl transferase family 2 LUM42_18280 PF00925 GTP cyclohydrolase II LUM42_18280 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LUM42_18285 PF13537 Glutamine amidotransferase domain LUM42_18285 PF00733 Asparagine synthase LUM42_18300 PF01042 Endoribonuclease L-PSP LUM42_18305 PF12852 Cupin LUM42_18305 PF12833 Helix-turn-helix domain LUM42_18310 PF00117 Glutamine amidotransferase class-I LUM42_18320 PF00682 HMGL-like LUM42_18320 PF08502 LeuA allosteric (dimerisation) domain LUM42_18330 PF00440 Bacterial regulatory proteins, tetR family LUM42_18335 PF00892 EamA-like transporter family LUM42_18340 PF01037 Lrp/AsnC ligand binding domain LUM42_18345 PF00196 Bacterial regulatory proteins, luxR family LUM42_18350 PF01906 Putative heavy-metal-binding LUM42_18355 PF14583 Oligogalacturonate lyase LUM42_18360 PF00474 Sodium:solute symporter family LUM42_18365 PF01554 MatE LUM42_18370 PF06917 Periplasmic pectate lyase LUM42_18375 PF01547 Bacterial extracellular solute-binding protein LUM42_18380 PF00005 ABC transporter LUM42_18380 PF17912 MalK OB fold domain LUM42_18380 PF03459 TOBE domain LUM42_18385 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_18390 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_18400 PF13229 Right handed beta helix region LUM42_18405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_18405 PF00672 HAMP domain LUM42_18405 PF12729 Four helix bundle sensory module for signal transduction LUM42_18410 PF01095 Pectinesterase LUM42_18415 PF01081 KDPG and KHG aldolase LUM42_18420 PF00294 pfkB family carbohydrate kinase LUM42_18425 PF12833 Helix-turn-helix domain LUM42_18425 PF02311 AraC-like ligand binding domain LUM42_18430 PF00596 Class II Aldolase and Adducin N-terminal domain LUM42_18435 PF05336 L-rhamnose mutarotase LUM42_18440 PF06134 L-rhamnose isomerase (RhaA) LUM42_18445 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LUM42_18445 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LUM42_18450 PF07470 Glycosyl Hydrolase Family 88 LUM42_18455 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LUM42_18465 PF03480 Bacterial extracellular solute-binding protein, family 7 LUM42_18480 PF07883 Cupin domain LUM42_18485 PF10688 Bacterial inner membrane protein LUM42_18495 PF09339 IclR helix-turn-helix domain LUM42_18495 PF01614 Bacterial transcriptional regulator LUM42_18500 PF00571 CBS domain LUM42_18520 PF13302 Acetyltransferase (GNAT) domain LUM42_18530 PF00155 Aminotransferase class I and II LUM42_18530 PF00392 Bacterial regulatory proteins, gntR family LUM42_18540 PF03783 Curli production assembly/transport component CsgG LUM42_18545 PF10614 Type VIII secretion system (T8SS), CsgF protein LUM42_18570 PF00005 ABC transporter LUM42_18570 PF08402 TOBE domain LUM42_18575 PF01547 Bacterial extracellular solute-binding protein LUM42_18580 PF14785 Maltose transport system permease protein MalF P2 domain LUM42_18580 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_18585 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_18600 PF00765 Autoinducer synthase LUM42_18605 PF03472 Autoinducer binding domain LUM42_18605 PF00196 Bacterial regulatory proteins, luxR family LUM42_18610 PF08220 DeoR-like helix-turn-helix domain LUM42_18610 PF00455 DeoR C terminal sensor domain LUM42_18630 PF05661 Protein of unknown function (DUF808) LUM42_18635 PF05958 tRNA (Uracil-5-)-methyltransferase LUM42_18640 PF01979 Amidohydrolase family LUM42_18645 PF03476 MOSC N-terminal beta barrel domain LUM42_18645 PF00111 2Fe-2S iron-sulfur cluster binding domain LUM42_18645 PF03473 MOSC domain LUM42_18675 PF00005 ABC transporter LUM42_18680 PF01032 FecCD transport family LUM42_18690 PF02472 Biopolymer transport protein ExbD/TolR LUM42_18695 PF01618 MotA/TolQ/ExbB proton channel family LUM42_18700 PF03544 Gram-negative bacterial TonB protein C-terminal LUM42_18705 PF04055 Radical SAM superfamily LUM42_18710 PF06228 Haem utilisation ChuX/HutX LUM42_18715 PF01243 Pyridoxamine 5'-phosphate oxidase LUM42_18720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_18720 PF02743 Cache domain LUM42_18720 PF00672 HAMP domain LUM42_18725 PF13520 Amino acid permease LUM42_18730 PF01037 Lrp/AsnC ligand binding domain LUM42_18730 PF13404 AsnC-type helix-turn-helix domain LUM42_18750 PF03063 Prismane/CO dehydrogenase family LUM42_18755 PF00970 Oxidoreductase FAD-binding domain LUM42_18755 PF00111 2Fe-2S iron-sulfur cluster binding domain LUM42_18755 PF00175 Oxidoreductase NAD-binding domain LUM42_18760 PF12792 CSS motif domain associated with EAL LUM42_18760 PF00563 EAL domain LUM42_18770 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LUM42_18770 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LUM42_18785 PF00512 His Kinase A (phospho-acceptor) domain LUM42_18785 PF00072 Response regulator receiver domain LUM42_18785 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LUM42_18785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_18785 PF00672 HAMP domain LUM42_18785 PF01627 Hpt domain LUM42_18790 PF00563 EAL domain LUM42_18790 PF00990 Diguanylate cyclase, GGDEF domain LUM42_18790 PF03707 Bacterial signalling protein N terminal repeat LUM42_18795 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LUM42_18805 PF02566 OsmC-like protein LUM42_18815 PF14602 Hexapeptide repeat of succinyl-transferase LUM42_18815 PF12464 Maltose acetyltransferase LUM42_18820 PF00892 EamA-like transporter family LUM42_18830 PF02753 Pili assembly chaperone PapD, C-terminal domain LUM42_18830 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LUM42_18835 PF00577 Outer membrane usher protein LUM42_18835 PF13954 PapC N-terminal domain LUM42_18835 PF13953 PapC C-terminal domain LUM42_18845 PF02753 Pili assembly chaperone PapD, C-terminal domain LUM42_18845 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LUM42_18850 PF01266 FAD dependent oxidoreductase LUM42_18855 PF08943 CsiD LUM42_18870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_18870 PF03466 LysR substrate binding domain LUM42_18875 PF01758 Sodium Bile acid symporter family LUM42_18880 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LUM42_18880 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LUM42_18885 PF02874 ATP synthase alpha/beta family, beta-barrel domain LUM42_18885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LUM42_18890 PF00231 ATP synthase LUM42_18895 PF00306 ATP synthase alpha/beta chain, C terminal domain LUM42_18895 PF02874 ATP synthase alpha/beta family, beta-barrel domain LUM42_18895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LUM42_18900 PF00213 ATP synthase delta (OSCP) subunit LUM42_18905 PF00430 ATP synthase B/B' CF(0) LUM42_18910 PF00137 ATP synthase subunit C LUM42_18915 PF00119 ATP synthase A chain LUM42_18925 PF00194 Eukaryotic-type carbonic anhydrase LUM42_18935 PF03060 Nitronate monooxygenase LUM42_18940 PF00271 Helicase conserved C-terminal domain LUM42_18940 PF00270 DEAD/DEAH box helicase LUM42_18945 PF00158 Sigma-54 interaction domain LUM42_18945 PF00072 Response regulator receiver domain LUM42_18945 PF02954 Bacterial regulatory protein, Fis family LUM42_18950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_18950 PF00512 His Kinase A (phospho-acceptor) domain LUM42_18955 PF00672 HAMP domain LUM42_18955 PF16591 Helical bimodular sensor domain LUM42_18955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_18960 PF03466 LysR substrate binding domain LUM42_18960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_18965 PF02441 Flavoprotein LUM42_18975 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LUM42_18980 PF04474 Protein of unknown function (DUF554) LUM42_18995 PF08267 Cobalamin-independent synthase, N-terminal domain LUM42_18995 PF01717 Cobalamin-independent synthase, Catalytic domain LUM42_19000 PF06826 Predicted Permease Membrane Region LUM42_19000 PF02080 TrkA-C domain LUM42_19005 PF00132 Bacterial transferase hexapeptide (six repeats) LUM42_19010 PF02558 Ketopantoate reductase PanE/ApbA LUM42_19010 PF08546 Ketopantoate reductase PanE/ApbA C terminal LUM42_19055 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LUM42_19060 PF02253 Phospholipase A1 LUM42_19070 PF02028 BCCT, betaine/carnitine/choline family transporter LUM42_19075 PF02347 Glycine cleavage system P-protein LUM42_19080 PF01597 Glycine cleavage H-protein LUM42_19085 PF00464 Serine hydroxymethyltransferase LUM42_19095 PF01571 Aminomethyltransferase folate-binding domain LUM42_19095 PF08669 Glycine cleavage T-protein C-terminal barrel domain LUM42_19105 PF00072 Response regulator receiver domain LUM42_19105 PF00990 Diguanylate cyclase, GGDEF domain LUM42_19110 PF00563 EAL domain LUM42_19110 PF00990 Diguanylate cyclase, GGDEF domain LUM42_19110 PF03707 Bacterial signalling protein N terminal repeat LUM42_19115 PF00294 pfkB family carbohydrate kinase LUM42_19130 PF13419 Haloacid dehalogenase-like hydrolase LUM42_19155 PF00226 DnaJ domain LUM42_19155 PF01556 DnaJ C terminal domain LUM42_19155 PF00684 DnaJ central domain LUM42_19165 PF00563 EAL domain LUM42_19165 PF00498 FHA domain LUM42_19165 PF00990 Diguanylate cyclase, GGDEF domain LUM42_19170 PF07055 Enoyl reductase FAD binding domain LUM42_19170 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LUM42_19170 PF12241 Trans-2-enoyl-CoA reductase catalytic region LUM42_19175 PF13472 GDSL-like Lipase/Acylhydrolase family LUM42_19180 PF00005 ABC transporter LUM42_19195 PF02626 Carboxyltransferase domain, subdomain A and B LUM42_19205 PF03746 LamB/YcsF family LUM42_19210 PF13426 PAS domain LUM42_19210 PF08448 PAS fold LUM42_19210 PF05231 MASE1 LUM42_19210 PF00990 Diguanylate cyclase, GGDEF domain LUM42_19210 PF00563 EAL domain LUM42_19210 PF08447 PAS fold LUM42_19215 PF16363 GDP-mannose 4,6 dehydratase LUM42_19220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_19220 PF00672 HAMP domain LUM42_19220 PF12729 Four helix bundle sensory module for signal transduction LUM42_19225 PF03222 Tryptophan/tyrosine permease family LUM42_19230 PF04336 Acyl carrier protein phosphodiesterase LUM42_19235 PF00270 DEAD/DEAH box helicase LUM42_19235 PF00271 Helicase conserved C-terminal domain LUM42_19240 PF00440 Bacterial regulatory proteins, tetR family LUM42_19240 PF08361 MAATS-type transcriptional repressor, C-terminal region LUM42_19245 PF00034 Cytochrome c LUM42_19250 PF01212 Beta-eliminating lyase LUM42_19255 PF00293 NUDIX domain LUM42_19260 PF17868 AAA lid domain LUM42_19260 PF12592 Protein of unknown function (DUF3763) LUM42_19260 PF07728 AAA domain (dynein-related subfamily) LUM42_19265 PF05762 VWA domain containing CoxE-like protein LUM42_19280 PF07715 TonB-dependent Receptor Plug Domain LUM42_19280 PF07660 Secretin and TonB N terminus short domain LUM42_19280 PF00593 TonB dependent receptor LUM42_19295 PF00672 HAMP domain LUM42_19295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_19310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_19310 PF03466 LysR substrate binding domain LUM42_19315 PF00892 EamA-like transporter family LUM42_19325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_19325 PF03466 LysR substrate binding domain LUM42_19330 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LUM42_19340 PF12706 Beta-lactamase superfamily domain LUM42_19345 PF01965 DJ-1/PfpI family LUM42_19355 PF00300 Histidine phosphatase superfamily (branch 1) LUM42_19360 PF01966 HD domain LUM42_19365 PF00465 Iron-containing alcohol dehydrogenase LUM42_19370 PF12833 Helix-turn-helix domain LUM42_19375 PF01979 Amidohydrolase family LUM42_19380 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_19380 PF13192 Thioredoxin domain LUM42_19385 PF10417 C-terminal domain of 1-Cys peroxiredoxin LUM42_19385 PF00578 AhpC/TSA family LUM42_19395 PF00682 HMGL-like LUM42_19400 PF00378 Enoyl-CoA hydratase/isomerase LUM42_19405 PF01039 Carboxyl transferase domain LUM42_19410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LUM42_19410 PF02770 Acyl-CoA dehydrogenase, middle domain LUM42_19410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LUM42_19415 PF00376 MerR family regulatory protein LUM42_19415 PF09278 MerR, DNA binding LUM42_19420 PF02803 Thiolase, C-terminal domain LUM42_19420 PF00108 Thiolase, N-terminal domain LUM42_19425 PF00171 Aldehyde dehydrogenase family LUM42_19430 PF02770 Acyl-CoA dehydrogenase, middle domain LUM42_19430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LUM42_19430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LUM42_19435 PF00378 Enoyl-CoA hydratase/isomerase LUM42_19440 PF00378 Enoyl-CoA hydratase/isomerase LUM42_19445 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LUM42_19445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LUM42_19455 PF01144 Coenzyme A transferase LUM42_19470 PF02810 SEC-C motif LUM42_19470 PF07517 SecA DEAD-like domain LUM42_19470 PF01043 SecA preprotein cross-linking domain LUM42_19470 PF07516 SecA Wing and Scaffold domain LUM42_19475 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LUM42_19485 PF03480 Bacterial extracellular solute-binding protein, family 7 LUM42_19490 PF07730 Histidine kinase LUM42_19490 PF17200 Single Cache domain 2 LUM42_19495 PF00196 Bacterial regulatory proteins, luxR family LUM42_19495 PF00072 Response regulator receiver domain LUM42_19500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_19500 PF03466 LysR substrate binding domain LUM42_19505 PF04715 Anthranilate synthase component I, N terminal region LUM42_19505 PF00117 Glutamine amidotransferase class-I LUM42_19505 PF00425 chorismate binding enzyme LUM42_19510 PF00465 Iron-containing alcohol dehydrogenase LUM42_19515 PF03180 NLPA lipoprotein LUM42_19525 PF02311 AraC-like ligand binding domain LUM42_19525 PF12833 Helix-turn-helix domain LUM42_19535 PF12849 PBP superfamily domain LUM42_19540 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_19545 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_19550 PF00005 ABC transporter LUM42_19555 PF02798 Glutathione S-transferase, N-terminal domain LUM42_19565 PF01012 Electron transfer flavoprotein domain LUM42_19570 PF01012 Electron transfer flavoprotein domain LUM42_19570 PF00766 Electron transfer flavoprotein FAD-binding domain LUM42_19580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LUM42_19580 PF00364 Biotin-requiring enzyme LUM42_19580 PF02817 e3 binding domain LUM42_19585 PF02779 Transketolase, pyrimidine binding domain LUM42_19585 PF02780 Transketolase, C-terminal domain LUM42_19590 PF00676 Dehydrogenase E1 component LUM42_19595 PF00563 EAL domain LUM42_19595 PF00990 Diguanylate cyclase, GGDEF domain LUM42_19595 PF03707 Bacterial signalling protein N terminal repeat LUM42_19610 PF07729 FCD domain LUM42_19610 PF00392 Bacterial regulatory proteins, gntR family LUM42_19615 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LUM42_19615 PF08666 SAF domain LUM42_19620 PF01232 Mannitol dehydrogenase Rossmann domain LUM42_19620 PF08125 Mannitol dehydrogenase C-terminal domain LUM42_19625 PF02614 Glucuronate isomerase LUM42_19630 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LUM42_19635 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LUM42_19640 PF03480 Bacterial extracellular solute-binding protein, family 7 LUM42_19645 PF01810 LysE type translocator LUM42_19650 PF02230 Phospholipase/Carboxylesterase LUM42_19655 PF13409 Glutathione S-transferase, N-terminal domain LUM42_19660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_19660 PF03466 LysR substrate binding domain LUM42_19665 PF00474 Sodium:solute symporter family LUM42_19675 PF02423 Ornithine cyclodeaminase/mu-crystallin family LUM42_19680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LUM42_19690 PF03480 Bacterial extracellular solute-binding protein, family 7 LUM42_19695 PF03807 NADP oxidoreductase coenzyme F420-dependent LUM42_19695 PF14748 Pyrroline-5-carboxylate reductase dimerisation LUM42_19700 PF12833 Helix-turn-helix domain LUM42_19715 PF01975 Survival protein SurE LUM42_19725 PF01168 Alanine racemase, N-terminal domain LUM42_19725 PF00842 Alanine racemase, C-terminal domain LUM42_19730 PF12833 Helix-turn-helix domain LUM42_19730 PF02311 AraC-like ligand binding domain LUM42_19740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_19740 PF12729 Four helix bundle sensory module for signal transduction LUM42_19740 PF00672 HAMP domain LUM42_19745 PF12833 Helix-turn-helix domain LUM42_19745 PF06719 AraC-type transcriptional regulator N-terminus LUM42_19765 PF00155 Aminotransferase class I and II LUM42_19775 PF00005 ABC transporter LUM42_19775 PF16326 ABC transporter C-terminal domain LUM42_19775 PF12848 ABC transporter LUM42_19780 PF13495 Phage integrase, N-terminal SAM-like domain LUM42_19780 PF00589 Phage integrase family LUM42_19905 PF13333 Integrase core domain LUM42_19905 PF13276 HTH-like domain LUM42_19905 PF00665 Integrase core domain LUM42_19925 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_19930 PF00155 Aminotransferase class I and II LUM42_19930 PF00392 Bacterial regulatory proteins, gntR family LUM42_19935 PF02525 Flavodoxin-like fold LUM42_19940 PF00578 AhpC/TSA family LUM42_19945 PF11412 Disulphide bond corrector protein DsbC LUM42_19945 PF02683 Cytochrome C biogenesis protein transmembrane region LUM42_19955 PF00156 Phosphoribosyl transferase domain LUM42_19960 PF12464 Maltose acetyltransferase LUM42_19960 PF14602 Hexapeptide repeat of succinyl-transferase LUM42_19975 PF02470 MlaD protein LUM42_19980 PF04403 Paraquat-inducible protein A LUM42_19985 PF00501 AMP-binding enzyme LUM42_19985 PF13193 AMP-binding enzyme C-terminal domain LUM42_19990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_19990 PF03466 LysR substrate binding domain LUM42_19995 PF00171 Aldehyde dehydrogenase family LUM42_20000 PF03480 Bacterial extracellular solute-binding protein, family 7 LUM42_20010 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LUM42_20020 PF00202 Aminotransferase class-III LUM42_20030 PF00709 Adenylosuccinate synthetase LUM42_20035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_20035 PF03466 LysR substrate binding domain LUM42_20040 PF01575 MaoC like domain LUM42_20045 PF12849 PBP superfamily domain LUM42_20055 PF00773 RNB domain LUM42_20055 PF08206 Ribonuclease B OB domain LUM42_20055 PF00575 S1 RNA binding domain LUM42_20060 PF00271 Helicase conserved C-terminal domain LUM42_20060 PF03880 DbpA RNA binding domain LUM42_20060 PF00270 DEAD/DEAH box helicase LUM42_20065 PF03129 Anticodon binding domain LUM42_20065 PF02824 TGS domain LUM42_20065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LUM42_20065 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LUM42_20070 PF00707 Translation initiation factor IF-3, C-terminal domain LUM42_20070 PF05198 Translation initiation factor IF-3, N-terminal domain LUM42_20075 PF01632 Ribosomal protein L35 LUM42_20080 PF00453 Ribosomal protein L20 LUM42_20085 PF03239 Iron permease FTR1 family LUM42_20090 PF13473 Cupredoxin-like domain LUM42_20095 PF09905 DNA-binding protein VF530 LUM42_20135 PF13411 MerR HTH family regulatory protein LUM42_20140 PF02627 Carboxymuconolactone decarboxylase family LUM42_20150 PF00892 EamA-like transporter family LUM42_20160 PF00462 Glutaredoxin LUM42_20160 PF08534 Redoxin LUM42_20170 PF13649 Methyltransferase domain LUM42_20195 PF00583 Acetyltransferase (GNAT) family LUM42_20200 PF01928 CYTH domain LUM42_20215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LUM42_20240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LUM42_20240 PF01411 tRNA synthetases class II (A) LUM42_20240 PF02272 DHHA1 domain LUM42_20245 PF06942 GlpM protein LUM42_20250 PF00293 NUDIX domain LUM42_20255 PF01810 LysE type translocator LUM42_20265 PF00583 Acetyltransferase (GNAT) family LUM42_20275 PF00857 Isochorismatase family LUM42_20290 PF01810 LysE type translocator LUM42_20300 PF01596 O-methyltransferase LUM42_20305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LUM42_20305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LUM42_20310 PF00440 Bacterial regulatory proteins, tetR family LUM42_20320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_20320 PF03466 LysR substrate binding domain LUM42_20330 PF02780 Transketolase, C-terminal domain LUM42_20330 PF00456 Transketolase, thiamine diphosphate binding domain LUM42_20330 PF02779 Transketolase, pyrimidine binding domain LUM42_20335 PF00923 Transaldolase/Fructose-6-phosphate aldolase LUM42_20345 PF00581 Rhodanese-like domain LUM42_20350 PF00899 ThiF family LUM42_20355 PF00994 Probable molybdopterin binding domain LUM42_20355 PF03453 MoeA N-terminal region (domain I and II) LUM42_20355 PF03454 MoeA C-terminal region (domain IV) LUM42_20360 PF01227 GTP cyclohydrolase I LUM42_20365 PF01625 Peptide methionine sulfoxide reductase LUM42_20365 PF01641 SelR domain LUM42_20370 PF01268 Formate--tetrahydrofolate ligase LUM42_20385 PF03466 LysR substrate binding domain LUM42_20385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_20390 PF13419 Haloacid dehalogenase-like hydrolase LUM42_20395 PF14760 Rnk N-terminus LUM42_20395 PF01272 Transcription elongation factor, GreA/GreB, C-term LUM42_20405 PF13419 Haloacid dehalogenase-like hydrolase LUM42_20410 PF00202 Aminotransferase class-III LUM42_20415 PF00266 Aminotransferase class-V LUM42_20425 PF00005 ABC transporter LUM42_20430 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_20435 PF07702 UTRA domain LUM42_20435 PF00392 Bacterial regulatory proteins, gntR family LUM42_20445 PF18027 Cytosolic carboxypeptidase N-terminal domain LUM42_20445 PF00246 Zinc carboxypeptidase LUM42_20470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LUM42_20475 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_20480 PF12911 N-terminal TM domain of oligopeptide transport permease C LUM42_20480 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_20485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LUM42_20485 PF00005 ABC transporter LUM42_20490 PF00132 Bacterial transferase hexapeptide (six repeats) LUM42_20490 PF12804 MobA-like NTP transferase domain LUM42_20490 PF03479 Plants and Prokaryotes Conserved (PCC) domain LUM42_20505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_20505 PF00512 His Kinase A (phospho-acceptor) domain LUM42_20505 PF09456 RcsC Alpha-Beta-Loop (ABL) LUM42_20505 PF00072 Response regulator receiver domain LUM42_20510 PF01590 GAF domain LUM42_20510 PF00360 Phytochrome region LUM42_20510 PF00990 Diguanylate cyclase, GGDEF domain LUM42_20510 PF00563 EAL domain LUM42_20515 PF00196 Bacterial regulatory proteins, luxR family LUM42_20515 PF00072 Response regulator receiver domain LUM42_20520 PF00990 Diguanylate cyclase, GGDEF domain LUM42_20520 PF17155 Gammaproteobacterial periplasmic sensor domain LUM42_20540 PF02743 Cache domain LUM42_20540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_20540 PF00672 HAMP domain LUM42_20545 PF05525 Branched-chain amino acid transport protein LUM42_20560 PF18081 Fanconi anemia-associated nuclease SAP domain LUM42_20560 PF08774 VRR-NUC domain LUM42_20585 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LUM42_20590 PF00486 Transcriptional regulatory protein, C terminal LUM42_20620 PF00155 Aminotransferase class I and II LUM42_20625 PF01497 Periplasmic binding protein LUM42_20625 PF12833 Helix-turn-helix domain LUM42_20630 PF01625 Peptide methionine sulfoxide reductase LUM42_20630 PF01641 SelR domain LUM42_20635 PF00860 Permease family LUM42_20645 PF01177 Asp/Glu/Hydantoin racemase LUM42_20660 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_20665 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_20670 PF00005 ABC transporter LUM42_20680 PF13593 SBF-like CPA transporter family (DUF4137) LUM42_20685 PF01425 Amidase LUM42_20695 PF00266 Aminotransferase class-V LUM42_20700 PF07687 Peptidase dimerisation domain LUM42_20700 PF01546 Peptidase family M20/M25/M40 LUM42_20720 PF01979 Amidohydrolase family LUM42_20725 PF00576 HIUase/Transthyretin family LUM42_20730 PF01014 Uricase LUM42_20730 PF09349 OHCU decarboxylase LUM42_20745 PF00111 2Fe-2S iron-sulfur cluster binding domain LUM42_20745 PF01799 [2Fe-2S] binding domain LUM42_20750 PF02608 ABC transporter substrate-binding protein PnrA-like LUM42_20755 PF02653 Branched-chain amino acid transport system / permease component LUM42_20760 PF02653 Branched-chain amino acid transport system / permease component LUM42_20765 PF00005 ABC transporter LUM42_20770 PF08362 YcdC-like protein, C-terminal region LUM42_20770 PF00440 Bacterial regulatory proteins, tetR family LUM42_20780 PF00990 Diguanylate cyclase, GGDEF domain LUM42_20790 PF17156 Gammaproteobacterial periplasmic sensor domain LUM42_20790 PF00990 Diguanylate cyclase, GGDEF domain LUM42_20805 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LUM42_20805 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LUM42_20805 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LUM42_20810 PF02233 NAD(P) transhydrogenase beta subunit LUM42_20820 PF00486 Transcriptional regulatory protein, C terminal LUM42_20820 PF00072 Response regulator receiver domain LUM42_20835 PF03701 Uncharacterised protein family (UPF0181) LUM42_20840 PF01253 Translation initiation factor SUI1 LUM42_20855 PF07478 D-ala D-ala ligase C-terminus LUM42_20855 PF01820 D-ala D-ala ligase N-terminus LUM42_20865 PF00583 Acetyltransferase (GNAT) family LUM42_20865 PF13380 CoA binding domain LUM42_20865 PF13607 Succinyl-CoA ligase like flavodoxin domain LUM42_20870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_20870 PF03466 LysR substrate binding domain LUM42_20875 PF00593 TonB dependent receptor LUM42_20875 PF07715 TonB-dependent Receptor Plug Domain LUM42_20885 PF12793 Sugar transport-related sRNA regulator N-term LUM42_20885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LUM42_20895 PF03061 Thioesterase superfamily LUM42_20900 PF01435 Peptidase family M48 LUM42_20905 PF03831 PhnA domain LUM42_20905 PF08274 PhnA Zinc-Ribbon LUM42_20915 PF03741 Integral membrane protein TerC family LUM42_20920 PF00149 Calcineurin-like phosphoesterase LUM42_20920 PF02872 5'-nucleotidase, C-terminal domain LUM42_20925 PF11398 Protein of unknown function (DUF2813) LUM42_20930 PF06496 Protein of unknown function (DUF1097) LUM42_20935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_20935 PF03466 LysR substrate binding domain LUM42_20940 PF01226 Formate/nitrite transporter LUM42_20945 PF04264 YceI-like domain LUM42_20950 PF01292 Prokaryotic cytochrome b561 LUM42_20975 PF00563 EAL domain LUM42_20975 PF00990 Diguanylate cyclase, GGDEF domain LUM42_20975 PF13426 PAS domain LUM42_20985 PF00384 Molybdopterin oxidoreductase LUM42_20990 PF02634 FdhD/NarQ family LUM42_20995 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LUM42_20995 PF00072 Response regulator receiver domain LUM42_20995 PF01627 Hpt domain LUM42_20995 PF00512 His Kinase A (phospho-acceptor) domain LUM42_20995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_20995 PF00672 HAMP domain LUM42_21000 PF00072 Response regulator receiver domain LUM42_21010 PF12833 Helix-turn-helix domain LUM42_21010 PF02311 AraC-like ligand binding domain LUM42_21015 PF08240 Alcohol dehydrogenase GroES-like domain LUM42_21015 PF00107 Zinc-binding dehydrogenase LUM42_21025 PF01047 MarR family LUM42_21030 PF01926 50S ribosome-binding GTPase LUM42_21035 PF02492 CobW/HypB/UreG, nucleotide-binding domain LUM42_21035 PF07683 Cobalamin synthesis protein cobW C-terminal domain LUM42_21040 PF00654 Voltage gated chloride channel LUM42_21050 PF00155 Aminotransferase class I and II LUM42_21055 PF00072 Response regulator receiver domain LUM42_21055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_21060 PF13476 AAA domain LUM42_21065 PF12320 Type 5 capsule protein repressor C-terminal domain LUM42_21065 PF00149 Calcineurin-like phosphoesterase LUM42_21070 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LUM42_21070 PF00356 Bacterial regulatory proteins, lacI family LUM42_21075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LUM42_21075 PF00381 PTS HPr component phosphorylation site LUM42_21080 PF00294 pfkB family carbohydrate kinase LUM42_21085 PF02378 Phosphotransferase system, EIIC LUM42_21085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LUM42_21090 PF18030 RimK PreATP-grasp domain LUM42_21090 PF08443 RimK-like ATP-grasp domain LUM42_21095 PF00155 Aminotransferase class I and II LUM42_21105 PF03477 ATP cone domain LUM42_21105 PF13597 Anaerobic ribonucleoside-triphosphate reductase LUM42_21115 PF00873 AcrB/AcrD/AcrF family LUM42_21120 PF00529 HlyD membrane-fusion protein of T1SS LUM42_21120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_21130 PF04143 Sulphur transport LUM42_21145 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_21145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LUM42_21155 PF13737 Transposase DDE domain LUM42_21190 PF12146 Serine aminopeptidase, S33 LUM42_21195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_21195 PF03466 LysR substrate binding domain LUM42_21200 PF13673 Acetyltransferase (GNAT) domain LUM42_21210 PF12833 Helix-turn-helix domain LUM42_21210 PF06719 AraC-type transcriptional regulator N-terminus LUM42_21220 PF12146 Serine aminopeptidase, S33 LUM42_21225 PF12146 Serine aminopeptidase, S33 LUM42_21230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LUM42_21250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_21250 PF03466 LysR substrate binding domain LUM42_21270 PF13533 Biotin-lipoyl like LUM42_21275 PF03466 LysR substrate binding domain LUM42_21275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_21280 PF01810 LysE type translocator LUM42_21285 PF00072 Response regulator receiver domain LUM42_21285 PF00486 Transcriptional regulatory protein, C terminal LUM42_21295 PF01266 FAD dependent oxidoreductase LUM42_21295 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LUM42_21300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_21300 PF08447 PAS fold LUM42_21305 PF00691 OmpA family LUM42_21305 PF05736 OprF membrane domain LUM42_21315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LUM42_21315 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LUM42_21320 PF13419 Haloacid dehalogenase-like hydrolase LUM42_21325 PF12729 Four helix bundle sensory module for signal transduction LUM42_21325 PF00672 HAMP domain LUM42_21325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_21330 PF07690 Major Facilitator Superfamily LUM42_21345 PF03606 C4-dicarboxylate anaerobic carrier LUM42_21350 PF00196 Bacterial regulatory proteins, luxR family LUM42_21350 PF00072 Response regulator receiver domain LUM42_21355 PF07730 Histidine kinase LUM42_21355 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LUM42_21355 PF00672 HAMP domain LUM42_21355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_21370 PF00384 Molybdopterin oxidoreductase LUM42_21370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LUM42_21370 PF01568 Molydopterin dinucleotide binding domain LUM42_21375 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LUM42_21380 PF03264 NapC/NirT cytochrome c family, N-terminal region LUM42_21390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LUM42_21400 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LUM42_21400 PF00561 alpha/beta hydrolase fold LUM42_21410 PF00108 Thiolase, N-terminal domain LUM42_21410 PF02803 Thiolase, C-terminal domain LUM42_21415 PF00106 short chain dehydrogenase LUM42_21420 PF02355 Protein export membrane protein LUM42_21420 PF07549 SecD/SecF GG Motif LUM42_21425 PF02355 Protein export membrane protein LUM42_21425 PF07549 SecD/SecF GG Motif LUM42_21425 PF13721 SecD export protein N-terminal TM region LUM42_21445 PF00990 Diguanylate cyclase, GGDEF domain LUM42_21450 PF00483 Nucleotidyl transferase LUM42_21455 PF00704 Glycosyl hydrolases family 18 LUM42_21455 PF06483 Chitinase C LUM42_21460 PF12833 Helix-turn-helix domain LUM42_21460 PF06719 AraC-type transcriptional regulator N-terminus LUM42_21465 PF00465 Iron-containing alcohol dehydrogenase LUM42_21475 PF00672 HAMP domain LUM42_21475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_21475 PF00512 His Kinase A (phospho-acceptor) domain LUM42_21475 PF00072 Response regulator receiver domain LUM42_21475 PF01627 Hpt domain LUM42_21480 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LUM42_21485 PF02142 MGS-like domain LUM42_21490 PF00857 Isochorismatase family LUM42_21495 PF00580 UvrD/REP helicase N-terminal domain LUM42_21495 PF12462 DNA helicase IV / RNA helicase N terminal LUM42_21495 PF13361 UvrD-like helicase C-terminal domain LUM42_21515 PF00529 HlyD membrane-fusion protein of T1SS LUM42_21530 PF00664 ABC transporter transmembrane region LUM42_21530 PF03412 Peptidase C39 family LUM42_21530 PF00005 ABC transporter LUM42_21535 PF12805 FUSC-like inner membrane protein yccS LUM42_21550 PF03459 TOBE domain LUM42_21550 PF00005 ABC transporter LUM42_21555 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_21565 PF07685 CobB/CobQ-like glutamine amidotransferase domain LUM42_21565 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LUM42_21585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_21585 PF09308 LuxQ, periplasmic LUM42_21585 PF00072 Response regulator receiver domain LUM42_21585 PF00512 His Kinase A (phospho-acceptor) domain LUM42_21590 PF13407 Periplasmic binding protein domain LUM42_21595 PF01541 GIY-YIG catalytic domain LUM42_21600 PF04337 Protein of unknown function, DUF480 LUM42_21610 PF04363 Protein of unknown function (DUF496) LUM42_21615 PF02899 Phage integrase, N-terminal SAM-like domain LUM42_21615 PF00589 Phage integrase family LUM42_21660 PF06892 Phage regulatory protein CII (CP76) LUM42_21685 PF05840 Bacteriophage replication gene A protein (GPA) LUM42_21770 PF02661 Fic/DOC family LUM42_21815 PF17482 Phage tail sheath C-terminal domain LUM42_21815 PF04984 Phage tail sheath protein subtilisin-like domain LUM42_21855 PF10688 Bacterial inner membrane protein LUM42_21860 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LUM42_21860 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LUM42_21865 PF00230 Major intrinsic protein LUM42_21870 PF04324 BFD-like [2Fe-2S] binding domain LUM42_21870 PF01266 FAD dependent oxidoreductase LUM42_21875 PF00890 FAD binding domain LUM42_21880 PF13183 4Fe-4S dicluster domain LUM42_21880 PF02754 Cysteine-rich domain LUM42_21895 PF13439 Glycosyltransferase Family 4 LUM42_21895 PF00534 Glycosyl transferases group 1 LUM42_21900 PF00534 Glycosyl transferases group 1 LUM42_21900 PF13439 Glycosyltransferase Family 4 LUM42_21925 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LUM42_21925 PF10531 SLBB domain LUM42_21925 PF02563 Polysaccharide biosynthesis/export protein LUM42_21940 PF00873 AcrB/AcrD/AcrF family LUM42_21945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_21950 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LUM42_21950 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LUM42_21955 PF00085 Thioredoxin LUM42_21960 PF07690 Major Facilitator Superfamily LUM42_21965 PF11756 Nitrous oxide-stimulated promoter LUM42_21985 PF10414 Sirohaem synthase dimerisation region LUM42_21985 PF14824 Sirohaem biosynthesis protein central LUM42_21985 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LUM42_21995 PF13806 Rieske-like [2Fe-2S] domain LUM42_22000 PF18267 Rubredoxin NAD+ reductase C-terminal domain LUM42_22000 PF07992 Pyridine nucleotide-disulphide oxidoreductase LUM42_22000 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LUM42_22000 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LUM42_22000 PF04324 BFD-like [2Fe-2S] binding domain LUM42_22005 PF02028 BCCT, betaine/carnitine/choline family transporter LUM42_22010 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_22015 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_22020 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_22025 PF00005 ABC transporter LUM42_22040 PF00593 TonB dependent receptor LUM42_22040 PF07715 TonB-dependent Receptor Plug Domain LUM42_22050 PF01032 FecCD transport family LUM42_22055 PF01497 Periplasmic binding protein LUM42_22060 PF00005 ABC transporter LUM42_22070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_22070 PF00672 HAMP domain LUM42_22075 PF01168 Alanine racemase, N-terminal domain LUM42_22075 PF00842 Alanine racemase, C-terminal domain LUM42_22080 PF03466 LysR substrate binding domain LUM42_22080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_22085 PF02028 BCCT, betaine/carnitine/choline family transporter LUM42_22095 PF00881 Nitroreductase family LUM42_22100 PF13419 Haloacid dehalogenase-like hydrolase LUM42_22105 PF07690 Major Facilitator Superfamily LUM42_22110 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LUM42_22110 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LUM42_22115 PF01232 Mannitol dehydrogenase Rossmann domain LUM42_22115 PF08125 Mannitol dehydrogenase C-terminal domain LUM42_22120 PF00325 Bacterial regulatory proteins, crp family LUM42_22120 PF04198 Putative sugar-binding domain LUM42_22125 PF02322 Cytochrome bd terminal oxidase subunit II LUM42_22130 PF01654 Cytochrome bd terminal oxidase subunit I LUM42_22135 PF00384 Molybdopterin oxidoreductase LUM42_22140 PF01062 Bestrophin, RFP-TM, chloride channel LUM42_22145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_22145 PF03466 LysR substrate binding domain LUM42_22150 PF02634 FdhD/NarQ family LUM42_22160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_22160 PF03466 LysR substrate binding domain LUM42_22165 PF00296 Luciferase-like monooxygenase LUM42_22175 PF01145 SPFH domain / Band 7 family LUM42_22175 PF16200 C-terminal region of band_7 LUM42_22195 PF02311 AraC-like ligand binding domain LUM42_22195 PF12833 Helix-turn-helix domain LUM42_22200 PF00871 Acetokinase family LUM42_22210 PF07715 TonB-dependent Receptor Plug Domain LUM42_22210 PF00593 TonB dependent receptor LUM42_22215 PF12833 Helix-turn-helix domain LUM42_22220 PF00005 ABC transporter LUM42_22225 PF01032 FecCD transport family LUM42_22230 PF01032 FecCD transport family LUM42_22250 PF05547 Immune inhibitor A peptidase M6 LUM42_22250 PF00801 PKD domain LUM42_22255 PF03280 Proteobacterial lipase chaperone protein LUM42_22260 PF00561 alpha/beta hydrolase fold LUM42_22265 PF12729 Four helix bundle sensory module for signal transduction LUM42_22265 PF00672 HAMP domain LUM42_22265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_22270 PF01037 Lrp/AsnC ligand binding domain LUM42_22270 PF13404 AsnC-type helix-turn-helix domain LUM42_22290 PF07690 Major Facilitator Superfamily LUM42_22300 PF00672 HAMP domain LUM42_22300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_22315 PF02540 NAD synthase LUM42_22320 PF03605 Anaerobic c4-dicarboxylate membrane transporter LUM42_22325 PF04397 LytTr DNA-binding domain LUM42_22325 PF00072 Response regulator receiver domain LUM42_22330 PF07694 5TMR of 5TMR-LYT LUM42_22330 PF06580 Histidine kinase LUM42_22335 PF00248 Aldo/keto reductase family LUM42_22350 PF00128 Alpha amylase, catalytic domain LUM42_22355 PF07504 Fungalysin/Thermolysin Propeptide Motif LUM42_22355 PF03413 Peptidase propeptide and YPEB domain LUM42_22355 PF01447 Thermolysin metallopeptidase, catalytic domain LUM42_22355 PF02868 Thermolysin metallopeptidase, alpha-helical domain LUM42_22355 PF04151 Bacterial pre-peptidase C-terminal domain LUM42_22360 PF03922 OmpW family LUM42_22380 PF08543 Phosphomethylpyrimidine kinase LUM42_22385 PF00005 ABC transporter LUM42_22390 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_22395 PF09084 NMT1/THI5 like LUM42_22400 PF03070 TENA/THI-4/PQQC family LUM42_22405 PF02110 Hydroxyethylthiazole kinase family LUM42_22415 PF00664 ABC transporter transmembrane region LUM42_22415 PF00005 ABC transporter LUM42_22420 PF00005 ABC transporter LUM42_22420 PF00664 ABC transporter transmembrane region LUM42_22430 PF00563 EAL domain LUM42_22430 PF12792 CSS motif domain associated with EAL LUM42_22435 PF00912 Transglycosylase LUM42_22455 PF00313 'Cold-shock' DNA-binding domain LUM42_22460 PF08240 Alcohol dehydrogenase GroES-like domain LUM42_22460 PF00107 Zinc-binding dehydrogenase LUM42_22465 PF00155 Aminotransferase class I and II LUM42_22470 PF00171 Aldehyde dehydrogenase family LUM42_22475 PF01590 GAF domain LUM42_22475 PF02954 Bacterial regulatory protein, Fis family LUM42_22475 PF00158 Sigma-54 interaction domain LUM42_22480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_22480 PF03466 LysR substrate binding domain LUM42_22485 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LUM42_22515 PF01966 HD domain LUM42_22520 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LUM42_22520 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LUM42_22525 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LUM42_22530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LUM42_22530 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LUM42_22545 PF00672 HAMP domain LUM42_22545 PF02743 Cache domain LUM42_22545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_22550 PF03466 LysR substrate binding domain LUM42_22550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_22565 PF02310 B12 binding domain LUM42_22565 PF02607 B12 binding domain LUM42_22565 PF02965 Vitamin B12 dependent methionine synthase, activation domain LUM42_22565 PF00809 Pterin binding enzyme LUM42_22565 PF02574 Homocysteine S-methyltransferase LUM42_22570 PF13520 Amino acid permease LUM42_22585 PF02595 Glycerate kinase family LUM42_22590 PF02447 GntP family permease LUM42_22595 PF05651 Putative sugar diacid recognition LUM42_22595 PF17853 GGDEF-like domain LUM42_22595 PF13556 PucR C-terminal helix-turn-helix domain LUM42_22600 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LUM42_22600 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LUM42_22605 PF12793 Sugar transport-related sRNA regulator N-term LUM42_22605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LUM42_22625 PF00072 Response regulator receiver domain LUM42_22625 PF00486 Transcriptional regulatory protein, C terminal LUM42_22660 PF00577 Outer membrane usher protein LUM42_22660 PF13954 PapC N-terminal domain LUM42_22660 PF13953 PapC C-terminal domain LUM42_22665 PF02753 Pili assembly chaperone PapD, C-terminal domain LUM42_22665 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LUM42_22675 PF05736 OprF membrane domain LUM42_22675 PF00691 OmpA family LUM42_22680 PF04632 Fusaric acid resistance protein family LUM42_22685 PF00529 HlyD membrane-fusion protein of T1SS LUM42_22685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_22700 PF07943 Penicillin-binding protein 5, C-terminal domain LUM42_22700 PF00768 D-alanyl-D-alanine carboxypeptidase LUM42_22705 PF00005 ABC transporter LUM42_22710 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_22715 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_22720 PF01053 Cys/Met metabolism PLP-dependent enzyme LUM42_22725 PF01037 Lrp/AsnC ligand binding domain LUM42_22730 PF00491 Arginase family LUM42_22735 PF17810 Arginine decarboxylase helical bundle domain LUM42_22735 PF17944 Arginine decarboxylase C-terminal helical extension LUM42_22735 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LUM42_22745 PF00005 ABC transporter LUM42_22745 PF00571 CBS domain LUM42_22750 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_22755 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LUM42_22765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_22765 PF00672 HAMP domain LUM42_22765 PF02743 Cache domain LUM42_22775 PF03448 MgtE intracellular N domain LUM42_22775 PF00571 CBS domain LUM42_22775 PF01769 Divalent cation transporter LUM42_22780 PF00166 Chaperonin 10 Kd subunit LUM42_22785 PF00118 TCP-1/cpn60 chaperonin family LUM42_22795 PF00490 Delta-aminolevulinic acid dehydratase LUM42_22800 PF00563 EAL domain LUM42_22800 PF03707 Bacterial signalling protein N terminal repeat LUM42_22800 PF00990 Diguanylate cyclase, GGDEF domain LUM42_22805 PF11849 Domain of unknown function (DUF3369) LUM42_22815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_22815 PF03466 LysR substrate binding domain LUM42_22830 PF13840 ACT domain LUM42_22830 PF00696 Amino acid kinase family LUM42_22835 PF06339 Ectoine synthase LUM42_22840 PF00202 Aminotransferase class-III LUM42_22845 PF00583 Acetyltransferase (GNAT) family LUM42_22850 PF02311 AraC-like ligand binding domain LUM42_22850 PF12833 Helix-turn-helix domain LUM42_22855 PF03741 Integral membrane protein TerC family LUM42_22865 PF01554 MatE LUM42_22870 PF01329 Pterin 4 alpha carbinolamine dehydratase LUM42_22875 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LUM42_22880 PF00501 AMP-binding enzyme LUM42_22880 PF13193 AMP-binding enzyme C-terminal domain LUM42_22885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_22885 PF03466 LysR substrate binding domain LUM42_22890 PF00512 His Kinase A (phospho-acceptor) domain LUM42_22890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_22895 PF00486 Transcriptional regulatory protein, C terminal LUM42_22895 PF00072 Response regulator receiver domain LUM42_22915 PF00501 AMP-binding enzyme LUM42_22925 PF08241 Methyltransferase domain LUM42_22930 PF03466 LysR substrate binding domain LUM42_22930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_22940 PF00478 IMP dehydrogenase / GMP reductase domain LUM42_22950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LUM42_22950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LUM42_22955 PF01256 Carbohydrate kinase LUM42_22955 PF03853 YjeF-related protein N-terminus LUM42_22960 PF00072 Response regulator receiver domain LUM42_22960 PF00486 Transcriptional regulatory protein, C terminal LUM42_22965 PF00072 Response regulator receiver domain LUM42_22965 PF00196 Bacterial regulatory proteins, luxR family LUM42_22970 PF00072 Response regulator receiver domain LUM42_22970 PF00512 His Kinase A (phospho-acceptor) domain LUM42_22970 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_22970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_22970 PF00989 PAS fold LUM42_22970 PF01627 Hpt domain LUM42_22975 PF03707 Bacterial signalling protein N terminal repeat LUM42_22975 PF00990 Diguanylate cyclase, GGDEF domain LUM42_22975 PF00563 EAL domain LUM42_22985 PF00486 Transcriptional regulatory protein, C terminal LUM42_22985 PF00072 Response regulator receiver domain LUM42_23005 PF03889 Alternative ribosome-rescue factor A LUM42_23010 PF00313 'Cold-shock' DNA-binding domain LUM42_23015 PF07152 YaeQ protein LUM42_23020 PF00990 Diguanylate cyclase, GGDEF domain LUM42_23025 PF00970 Oxidoreductase FAD-binding domain LUM42_23025 PF00042 Globin LUM42_23025 PF00175 Oxidoreductase NAD-binding domain LUM42_23030 PF00158 Sigma-54 interaction domain LUM42_23030 PF01590 GAF domain LUM42_23040 PF01546 Peptidase family M20/M25/M40 LUM42_23040 PF07687 Peptidase dimerisation domain LUM42_23045 PF07662 Na+ dependent nucleoside transporter C-terminus LUM42_23045 PF07670 Nucleoside recognition LUM42_23045 PF01773 Na+ dependent nucleoside transporter N-terminus LUM42_23055 PF00128 Alpha amylase, catalytic domain LUM42_23070 PF12729 Four helix bundle sensory module for signal transduction LUM42_23070 PF00672 HAMP domain LUM42_23070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_23075 PF07726 ATPase family associated with various cellular activities (AAA) LUM42_23075 PF17863 AAA lid domain LUM42_23080 PF01882 Protein of unknown function DUF58 LUM42_23095 PF13519 von Willebrand factor type A domain LUM42_23095 PF07584 Aerotolerance regulator N-terminal LUM42_23110 PF00990 Diguanylate cyclase, GGDEF domain LUM42_23110 PF00563 EAL domain LUM42_23120 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LUM42_23120 PF00072 Response regulator receiver domain LUM42_23120 PF00512 His Kinase A (phospho-acceptor) domain LUM42_23120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_23120 PF00672 HAMP domain LUM42_23120 PF01627 Hpt domain LUM42_23125 PF00990 Diguanylate cyclase, GGDEF domain LUM42_23125 PF00072 Response regulator receiver domain LUM42_23130 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LUM42_23135 PF04996 Succinylarginine dihydrolase LUM42_23140 PF00171 Aldehyde dehydrogenase family LUM42_23145 PF04958 Arginine N-succinyltransferase beta subunit LUM42_23150 PF04958 Arginine N-succinyltransferase beta subunit LUM42_23155 PF00202 Aminotransferase class-III LUM42_23160 PF12833 Helix-turn-helix domain LUM42_23165 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LUM42_23165 PF13378 Enolase C-terminal domain-like LUM42_23175 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_23180 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_23185 PF00497 Bacterial extracellular solute-binding proteins, family 3 LUM42_23190 PF03466 LysR substrate binding domain LUM42_23190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_23200 PF04320 Protein with unknown function (DUF469) LUM42_23205 PF00582 Universal stress protein family LUM42_23210 PF00472 RF-1 domain LUM42_23215 PF12843 Putative quorum-sensing-regulated virulence factor LUM42_23225 PF01266 FAD dependent oxidoreductase LUM42_23240 PF00158 Sigma-54 interaction domain LUM42_23240 PF00072 Response regulator receiver domain LUM42_23240 PF02954 Bacterial regulatory protein, Fis family LUM42_23245 PF00512 His Kinase A (phospho-acceptor) domain LUM42_23245 PF02743 Cache domain LUM42_23245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUM42_23265 PF00672 HAMP domain LUM42_23265 PF12729 Four helix bundle sensory module for signal transduction LUM42_23265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_23270 PF13188 PAS domain LUM42_23270 PF03707 Bacterial signalling protein N terminal repeat LUM42_23270 PF00990 Diguanylate cyclase, GGDEF domain LUM42_23270 PF00563 EAL domain LUM42_23275 PF07690 Major Facilitator Superfamily LUM42_23280 PF03009 Glycerophosphoryl diester phosphodiesterase family LUM42_23285 PF01048 Phosphorylase superfamily LUM42_23290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_23290 PF03466 LysR substrate binding domain LUM42_23295 PF00356 Bacterial regulatory proteins, lacI family LUM42_23300 PF00294 pfkB family carbohydrate kinase LUM42_23305 PF13407 Periplasmic binding protein domain LUM42_23310 PF02653 Branched-chain amino acid transport system / permease component LUM42_23315 PF00005 ABC transporter LUM42_23320 PF05025 RbsD / FucU transport protein family LUM42_23340 PF01471 Putative peptidoglycan binding domain LUM42_23340 PF04717 Type VI secretion system, phage-baseplate injector LUM42_23395 PF13737 Transposase DDE domain LUM42_23410 PF04717 Type VI secretion system, phage-baseplate injector LUM42_23420 PF06761 Intracellular multiplication and human macrophage-killing LUM42_23420 PF14331 ImcF-related N-terminal domain LUM42_23420 PF06744 Type VI secretion protein IcmF C-terminal LUM42_23435 PF02954 Bacterial regulatory protein, Fis family LUM42_23435 PF00158 Sigma-54 interaction domain LUM42_23440 PF07724 AAA domain (Cdc48 subfamily) LUM42_23440 PF10431 C-terminal, D2-small domain, of ClpB protein LUM42_23440 PF17871 AAA lid domain LUM42_23440 PF00004 ATPase family associated with various cellular activities (AAA) LUM42_23450 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LUM42_23470 PF05947 Type VI secretion system, TssF LUM42_23480 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LUM42_23500 PF01037 Lrp/AsnC ligand binding domain LUM42_23505 PF01810 LysE type translocator LUM42_23510 PF01047 MarR family LUM42_23520 PF00892 EamA-like transporter family LUM42_23525 PF00849 RNA pseudouridylate synthase LUM42_23530 PF16925 Tetracyclin repressor-like, C-terminal domain LUM42_23530 PF00440 Bacterial regulatory proteins, tetR family LUM42_23535 PF00107 Zinc-binding dehydrogenase LUM42_23535 PF16884 N-terminal domain of oxidoreductase LUM42_23545 PF01740 STAS domain LUM42_23545 PF00916 Sulfate permease family LUM42_23550 PF13419 Haloacid dehalogenase-like hydrolase LUM42_23555 PF07702 UTRA domain LUM42_23555 PF00392 Bacterial regulatory proteins, gntR family LUM42_23560 PF01547 Bacterial extracellular solute-binding protein LUM42_23580 PF00005 ABC transporter LUM42_23580 PF08402 TOBE domain LUM42_23590 PF00563 EAL domain LUM42_23590 PF12792 CSS motif domain associated with EAL LUM42_23595 PF00248 Aldo/keto reductase family LUM42_23600 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LUM42_23605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_23605 PF03466 LysR substrate binding domain LUM42_23610 PF07690 Major Facilitator Superfamily LUM42_23630 PF00581 Rhodanese-like domain LUM42_23645 PF01479 S4 domain LUM42_23645 PF00579 tRNA synthetases class I (W and Y) LUM42_23650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_23650 PF00672 HAMP domain LUM42_23650 PF02743 Cache domain LUM42_23655 PF03928 Haem-degrading LUM42_23660 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LUM42_23660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LUM42_23665 PF00455 DeoR C terminal sensor domain LUM42_23665 PF08220 DeoR-like helix-turn-helix domain LUM42_23670 PF02028 BCCT, betaine/carnitine/choline family transporter LUM42_23675 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LUM42_23675 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LUM42_23690 PF16458 Beta-prism lectin LUM42_23690 PF07968 Leukocidin/Hemolysin toxin family LUM42_23690 PF12563 Hemolytic toxin N terminal LUM42_23695 PF00657 GDSL-like Lipase/Acylhydrolase LUM42_23700 PF07274 Protein of unknown function (DUF1440) LUM42_23705 PF00892 EamA-like transporter family LUM42_23710 PF00155 Aminotransferase class I and II LUM42_23710 PF00392 Bacterial regulatory proteins, gntR family LUM42_23720 PF02567 Phenazine biosynthesis-like protein LUM42_23725 PF12833 Helix-turn-helix domain LUM42_23725 PF02311 AraC-like ligand binding domain LUM42_23745 PF08447 PAS fold LUM42_23745 PF13426 PAS domain LUM42_23745 PF05231 MASE1 LUM42_23745 PF00990 Diguanylate cyclase, GGDEF domain LUM42_23745 PF00563 EAL domain LUM42_23745 PF08448 PAS fold LUM42_23750 PF01554 MatE LUM42_23755 PF00793 DAHP synthetase I family LUM42_23765 PF12706 Beta-lactamase superfamily domain LUM42_23770 PF01040 UbiA prenyltransferase family LUM42_23775 PF02628 Cytochrome oxidase assembly protein LUM42_23795 PF00510 Cytochrome c oxidase subunit III LUM42_23800 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 LUM42_23805 PF00115 Cytochrome C and Quinol oxidase polypeptide I LUM42_23810 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LUM42_23810 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LUM42_23815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LUM42_23815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LUM42_23815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LUM42_23815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LUM42_23820 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LUM42_23830 PF01810 LysE type translocator LUM42_23855 PF01557 Fumarylacetoacetate (FAA) hydrolase family LUM42_23860 PF01047 MarR family LUM42_23865 PF02566 OsmC-like protein LUM42_23870 PF00267 Gram-negative porin LUM42_23875 PF00462 Glutaredoxin LUM42_23885 PF07690 Major Facilitator Superfamily LUM42_23890 PF03466 LysR substrate binding domain LUM42_23890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LUM42_23895 PF00990 Diguanylate cyclase, GGDEF domain LUM42_23895 PF08448 PAS fold LUM42_23895 PF08447 PAS fold LUM42_23895 PF00563 EAL domain LUM42_23900 PF01551 Peptidase family M23 LUM42_23900 PF08525 Opacity-associated protein A N-terminal motif LUM42_23900 PF01476 LysM domain LUM42_23915 PF01740 STAS domain LUM42_23915 PF00916 Sulfate permease family LUM42_23920 PF07670 Nucleoside recognition LUM42_23930 PF00990 Diguanylate cyclase, GGDEF domain LUM42_23930 PF17152 Periplasmic sensor domain LUM42_23935 PF00005 ABC transporter LUM42_23940 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_23945 PF00528 Binding-protein-dependent transport system inner membrane component LUM42_23950 PF12849 PBP superfamily domain LUM42_23955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_23955 PF00672 HAMP domain LUM42_23960 PF00270 DEAD/DEAH box helicase LUM42_23960 PF00271 Helicase conserved C-terminal domain LUM42_23970 PF17969 L,D-transpeptidase C-terminal domain LUM42_23970 PF01476 LysM domain LUM42_23970 PF03734 L,D-transpeptidase catalytic domain LUM42_23975 PF00875 DNA photolyase LUM42_23975 PF03441 FAD binding domain of DNA photolyase LUM42_23980 PF13411 MerR HTH family regulatory protein LUM42_23985 PF08349 Protein of unknown function (DUF1722) LUM42_23990 PF01048 Phosphorylase superfamily LUM42_24005 PF00990 Diguanylate cyclase, GGDEF domain LUM42_24010 PF11742 Protein of unknown function (DUF3302) LUM42_24015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LUM42_24015 PF00529 HlyD membrane-fusion protein of T1SS LUM42_24045 PF12945 Flagellar protein YcgR LUM42_24045 PF07238 PilZ domain LUM42_24050 PF03616 Sodium/glutamate symporter LUM42_24065 PF02630 SCO1/SenC LUM42_24075 PF03193 RsgA GTPase LUM42_24080 PF00375 Sodium:dicarboxylate symporter family LUM42_24090 PF07148 Maltose operon periplasmic protein precursor (MalM) LUM42_24095 PF02264 LamB porin LUM42_24100 PF00128 Alpha amylase, catalytic domain LUM42_24100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LUM42_24105 PF00664 ABC transporter transmembrane region LUM42_24105 PF00005 ABC transporter LUM42_24125 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LUM42_24125 PF01568 Molydopterin dinucleotide binding domain LUM42_24125 PF00384 Molybdopterin oxidoreductase LUM42_24125 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LUM42_24125 PF12838 4Fe-4S dicluster domain LUM42_24140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LUM42_24140 PF00672 HAMP domain LUM42_24150 PF00005 ABC transporter LUM42_24155 PF00392 Bacterial regulatory proteins, gntR family LUM42_24155 PF07702 UTRA domain LUM42_24160 PF00704 Glycosyl hydrolases family 18 LUM42_24160 PF08329 Chitinase A, N-terminal domain LUM42_24165 PF01212 Beta-eliminating lyase LUM42_24170 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LUM42_24175 PF01966 HD domain LUM42_24180 PF13302 Acetyltransferase (GNAT) domain LUM42_24185 PF00939 Sodium:sulfate symporter transmembrane region LUM42_24210 PF01124 MAPEG family LUM42_24260 PF04717 Type VI secretion system, phage-baseplate injector LUM42_24265 PF05638 Type VI secretion system effector, Hcp LUM42_24270 PF00128 Alpha amylase, catalytic domain LUM42_24270 PF02806 Alpha amylase, C-terminal all-beta domain LUM42_24270 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LUM42_24275 PF02446 4-alpha-glucanotransferase LUM42_24280 PF00343 Carbohydrate phosphorylase