locus-tag class description BSQ33_00010 PF00117 Glutamine amidotransferase class-I BSQ33_00015 PF00425 chorismate binding enzyme BSQ33_00015 PF04715 Anthranilate synthase component I, N terminal region BSQ33_00020 PF02811 PHP domain BSQ33_00025 PF01300 Telomere recombination BSQ33_00030 PF00849 RNA pseudouridylate synthase BSQ33_00030 PF01479 S4 domain BSQ33_00035 PF00664 ABC transporter transmembrane region BSQ33_00035 PF00005 ABC transporter BSQ33_00040 PF00664 ABC transporter transmembrane region BSQ33_00040 PF00005 ABC transporter BSQ33_00045 PF07992 Pyridine nucleotide-disulphide oxidoreductase BSQ33_00055 PF00266 Aminotransferase class-V BSQ33_00065 PF02698 DUF218 domain BSQ33_00075 PF03949 Malic enzyme, NAD binding domain BSQ33_00075 PF00390 Malic enzyme, N-terminal domain BSQ33_00085 PF01259 SAICAR synthetase BSQ33_00105 PF00691 OmpA family BSQ33_00120 PF13183 4Fe-4S dicluster domain BSQ33_00120 PF02913 FAD linked oxidases, C-terminal domain BSQ33_00120 PF01565 FAD binding domain BSQ33_00125 PF04191 Phospholipid methyltransferase BSQ33_00135 PF04269 Protein of unknown function, DUF440 BSQ33_00140 PF01132 Elongation factor P (EF-P) OB domain BSQ33_00140 PF08207 Elongation factor P (EF-P) KOW-like domain BSQ33_00140 PF09285 Elongation factor P, C-terminal BSQ33_00150 PF00136 DNA polymerase family B BSQ33_00150 PF03104 DNA polymerase family B, exonuclease domain BSQ33_00160 PF00196 Bacterial regulatory proteins, luxR family BSQ33_00160 PF00072 Response regulator receiver domain BSQ33_00165 PF08459 UvrC Helix-hairpin-helix N-terminal BSQ33_00165 PF02151 UvrB/uvrC motif BSQ33_00165 PF01541 GIY-YIG catalytic domain BSQ33_00170 PF01066 CDP-alcohol phosphatidyltransferase BSQ33_00175 PF03649 Uncharacterised protein family (UPF0014) BSQ33_00185 PF00005 ABC transporter BSQ33_00190 PF00005 ABC transporter BSQ33_00190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BSQ33_00195 PF12911 N-terminal TM domain of oligopeptide transport permease C BSQ33_00195 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_00200 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_00205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BSQ33_00210 PF00158 Sigma-54 interaction domain BSQ33_00210 PF02954 Bacterial regulatory protein, Fis family BSQ33_00215 PF04012 PspA/IM30 family BSQ33_00225 PF04024 PspC domain BSQ33_00230 PF01053 Cys/Met metabolism PLP-dependent enzyme BSQ33_00235 PF13396 Phospholipase_D-nuclease N-terminal BSQ33_00235 PF13091 PLD-like domain BSQ33_00240 PF13426 PAS domain BSQ33_00240 PF08447 PAS fold BSQ33_00240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_00245 PF00209 Sodium:neurotransmitter symporter family BSQ33_00250 PF00849 RNA pseudouridylate synthase BSQ33_00255 PF10672 S-adenosylmethionine-dependent methyltransferase BSQ33_00255 PF01170 Putative RNA methylase family UPF0020 BSQ33_00255 PF02926 THUMP domain BSQ33_00265 PF06945 Protein of unknown function (DUF1289) BSQ33_00275 PF01386 Ribosomal L25p family BSQ33_00280 PF00271 Helicase conserved C-terminal domain BSQ33_00280 PF04851 Type III restriction enzyme, res subunit BSQ33_00285 PF00849 RNA pseudouridylate synthase BSQ33_00285 PF01479 S4 domain BSQ33_00290 PF07690 Major Facilitator Superfamily BSQ33_00300 PF00106 short chain dehydrogenase BSQ33_00305 PF00107 Zinc-binding dehydrogenase BSQ33_00305 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_00310 PF03480 Bacterial extracellular solute-binding protein, family 7 BSQ33_00320 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BSQ33_00325 PF07729 FCD domain BSQ33_00325 PF00392 Bacterial regulatory proteins, gntR family BSQ33_00330 PF13378 Enolase C-terminal domain-like BSQ33_00330 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BSQ33_00345 PF00753 Metallo-beta-lactamase superfamily BSQ33_00355 PF02525 Flavodoxin-like fold BSQ33_00365 PF00392 Bacterial regulatory proteins, gntR family BSQ33_00365 PF07729 FCD domain BSQ33_00370 PF01063 Amino-transferase class IV BSQ33_00375 PF14748 Pyrroline-5-carboxylate reductase dimerisation BSQ33_00375 PF03807 NADP oxidoreductase coenzyme F420-dependent BSQ33_00390 PF02811 PHP domain BSQ33_00390 PF14579 Helix-hairpin-helix motif BSQ33_00390 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BSQ33_00390 PF07733 Bacterial DNA polymerase III alpha NTPase domain BSQ33_00390 PF11490 DNA polymerase III polC-type N-terminus II BSQ33_00390 PF00929 Exonuclease BSQ33_00400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BSQ33_00400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BSQ33_00405 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BSQ33_00405 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BSQ33_00410 PF07690 Major Facilitator Superfamily BSQ33_00435 PF00589 Phage integrase family BSQ33_00435 PF02899 Phage integrase, N-terminal SAM-like domain BSQ33_00440 PF01527 Transposase BSQ33_00445 PF13683 Integrase core domain BSQ33_00445 PF13276 HTH-like domain BSQ33_00465 PF11066 Protein of unknown function (DUF2867) BSQ33_00465 PF13460 NAD(P)H-binding BSQ33_00470 PF01554 MatE BSQ33_00475 PF00005 ABC transporter BSQ33_00485 PF06965 Na+/H+ antiporter 1 BSQ33_00495 PF00202 Aminotransferase class-III BSQ33_00500 PF03435 Saccharopine dehydrogenase NADP binding domain BSQ33_00500 PF16653 Saccharopine dehydrogenase C-terminal domain BSQ33_00505 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BSQ33_00510 PF17200 Single Cache domain 2 BSQ33_00510 PF00672 HAMP domain BSQ33_00510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_00520 PF00994 Probable molybdopterin binding domain BSQ33_00530 PF00111 2Fe-2S iron-sulfur cluster binding domain BSQ33_00535 PF00268 Ribonucleotide reductase, small chain BSQ33_00540 PF00317 Ribonucleotide reductase, all-alpha domain BSQ33_00540 PF02867 Ribonucleotide reductase, barrel domain BSQ33_00540 PF03477 ATP cone domain BSQ33_00550 PF03989 DNA gyrase C-terminal domain, beta-propeller BSQ33_00550 PF00521 DNA gyrase/topoisomerase IV, subunit A BSQ33_00555 PF00925 GTP cyclohydrolase II BSQ33_00560 PF00753 Metallo-beta-lactamase superfamily BSQ33_00575 PF01047 MarR family BSQ33_00580 PF02028 BCCT, betaine/carnitine/choline family transporter BSQ33_00590 PF00571 CBS domain BSQ33_00620 PF00857 Isochorismatase family BSQ33_00625 PF12431 Transcriptional regulator BSQ33_00625 PF00072 Response regulator receiver domain BSQ33_00630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_00630 PF17203 Single cache domain 3 BSQ33_00635 PF03390 2-hydroxycarboxylate transporter family BSQ33_00640 PF08218 Citrate lyase ligase C-terminal domain BSQ33_00645 PF06857 Malonate decarboxylase delta subunit (MdcD) BSQ33_00650 PF03328 HpcH/HpaI aldolase/citrate lyase family BSQ33_00655 PF04223 Citrate lyase, alpha subunit (CitF) BSQ33_00660 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase BSQ33_00665 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BSQ33_00670 PF10672 S-adenosylmethionine-dependent methyltransferase BSQ33_00670 PF17785 PUA-like domain BSQ33_00675 PF00708 Acylphosphatase BSQ33_00680 PF04358 DsrC like protein BSQ33_00685 PF01027 Inhibitor of apoptosis-promoting Bax1 BSQ33_00690 PF00005 ABC transporter BSQ33_00695 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_00700 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_00705 PF00497 Bacterial extracellular solute-binding proteins, family 3 BSQ33_00710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BSQ33_00710 PF14824 Sirohaem biosynthesis protein central BSQ33_00710 PF10414 Sirohaem synthase dimerisation region BSQ33_00715 PF10928 Protein of unknown function (DUF2810) BSQ33_00720 PF04461 Protein of unknown function (DUF520) BSQ33_00725 PF00793 DAHP synthetase I family BSQ33_00735 PF13509 S1 domain BSQ33_00735 PF17783 CvfB-like winged helix domain BSQ33_00740 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF BSQ33_00740 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF BSQ33_00740 PF01189 16S rRNA methyltransferase RsmB/F BSQ33_00745 PF13185 GAF domain BSQ33_00750 PF17516 ProQ C-terminal domain BSQ33_00750 PF04352 ProQ/FINO family BSQ33_00755 PF11818 C-terminal domain of tail specific protease (DUF3340) BSQ33_00755 PF17804 Tail specific protease N-terminal domain BSQ33_00755 PF00595 PDZ domain BSQ33_00755 PF03572 Peptidase family S41 BSQ33_00765 PF01433 Peptidase family M1 domain BSQ33_00765 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BSQ33_00765 PF11940 Domain of unknown function (DUF3458) Ig-like fold BSQ33_00775 PF05088 Bacterial NAD-glutamate dehydrogenase BSQ33_00790 PF07126 Cell-division protein ZapC BSQ33_00795 PF02926 THUMP domain BSQ33_00795 PF10672 S-adenosylmethionine-dependent methyltransferase BSQ33_00795 PF01170 Putative RNA methylase family UPF0020 BSQ33_00810 PF04957 Ribosome modulation factor BSQ33_00815 PF07977 FabA-like domain BSQ33_00820 PF05362 Lon protease (S16) C-terminal proteolytic domain BSQ33_00820 PF13654 AAA domain BSQ33_00825 PF17414 MatP C-terminal ribbon-helix-helix domain BSQ33_00825 PF06303 MatP N-terminal domain BSQ33_00835 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_00835 PF00072 Response regulator receiver domain BSQ33_00965 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BSQ33_00965 PF00391 PEP-utilising enzyme, mobile domain BSQ33_00975 PF00202 Aminotransferase class-III BSQ33_00980 PF00891 O-methyltransferase domain BSQ33_00980 PF16864 Dimerisation domain BSQ33_00990 PF00550 Phosphopantetheine attachment site BSQ33_00990 PF00155 Aminotransferase class I and II BSQ33_00995 PF13193 AMP-binding enzyme C-terminal domain BSQ33_00995 PF00501 AMP-binding enzyme BSQ33_01000 PF00109 Beta-ketoacyl synthase, N-terminal domain BSQ33_01000 PF02801 Beta-ketoacyl synthase, C-terminal domain BSQ33_01010 PF01648 4'-phosphopantetheinyl transferase superfamily BSQ33_01030 PF09308 LuxQ, periplasmic BSQ33_01030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_01030 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_01030 PF00072 Response regulator receiver domain BSQ33_01045 PF13545 Crp-like helix-turn-helix domain BSQ33_01045 PF00027 Cyclic nucleotide-binding domain BSQ33_01050 PF00582 Universal stress protein family BSQ33_01055 PF01171 PP-loop family BSQ33_01070 PF00005 ABC transporter BSQ33_01070 PF08402 TOBE domain BSQ33_01075 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_01080 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_01085 PF13416 Bacterial extracellular solute-binding protein BSQ33_01090 PF02146 Sir2 family BSQ33_01095 PF03222 Tryptophan/tyrosine permease family BSQ33_01100 PF00909 Ammonium Transporter Family BSQ33_01110 PF00072 Response regulator receiver domain BSQ33_01110 PF02954 Bacterial regulatory protein, Fis family BSQ33_01110 PF00158 Sigma-54 interaction domain BSQ33_01115 PF12804 MobA-like NTP transferase domain BSQ33_01120 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BSQ33_01125 PF00480 ROK family BSQ33_01130 PF00672 HAMP domain BSQ33_01130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_01130 PF17200 Single Cache domain 2 BSQ33_01145 PF00677 Lumazine binding domain BSQ33_01150 PF01554 MatE BSQ33_01155 PF14743 DNA ligase OB-like domain BSQ33_01155 PF01068 ATP dependent DNA ligase domain BSQ33_01165 PF03544 Gram-negative bacterial TonB protein C-terminal BSQ33_01170 PF02472 Biopolymer transport protein ExbD/TolR BSQ33_01175 PF01618 MotA/TolQ/ExbB proton channel family BSQ33_01180 PF01618 MotA/TolQ/ExbB proton channel family BSQ33_01190 PF03009 Glycerophosphoryl diester phosphodiesterase family BSQ33_01200 PF01235 Sodium:alanine symporter family BSQ33_01215 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BSQ33_01225 PF02627 Carboxymuconolactone decarboxylase family BSQ33_01235 PF00701 Dihydrodipicolinate synthetase family BSQ33_01250 PF01566 Natural resistance-associated macrophage protein BSQ33_01255 PF00701 Dihydrodipicolinate synthetase family BSQ33_01270 PF01022 Bacterial regulatory protein, arsR family BSQ33_01280 PF03358 NADPH-dependent FMN reductase BSQ33_01285 PF01758 Sodium Bile acid symporter family BSQ33_01290 PF03960 ArsC family BSQ33_01295 PF10509 Galactokinase galactose-binding signature BSQ33_01295 PF08544 GHMP kinases C terminal BSQ33_01295 PF00288 GHMP kinases N terminal domain BSQ33_01300 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BSQ33_01300 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BSQ33_01305 PF16363 GDP-mannose 4,6 dehydratase BSQ33_01310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_01310 PF00672 HAMP domain BSQ33_01310 PF12729 Four helix bundle sensory module for signal transduction BSQ33_01315 PF02264 LamB porin BSQ33_01320 PF08532 Beta-galactosidase trimerisation domain BSQ33_01320 PF08533 Beta-galactosidase C-terminal domain BSQ33_01320 PF02449 Beta-galactosidase BSQ33_01325 PF07745 Glycosyl hydrolase family 53 BSQ33_01330 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_01335 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_01340 PF13416 Bacterial extracellular solute-binding protein BSQ33_01345 PF17912 MalK OB fold domain BSQ33_01345 PF00005 ABC transporter BSQ33_01355 PF07745 Glycosyl hydrolase family 53 BSQ33_01365 PF13419 Haloacid dehalogenase-like hydrolase BSQ33_01375 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BSQ33_01375 PF00271 Helicase conserved C-terminal domain BSQ33_01375 PF04408 Helicase associated domain (HA2) BSQ33_01375 PF11898 Domain of unknown function (DUF3418) BSQ33_01375 PF00270 DEAD/DEAH box helicase BSQ33_01390 PF00440 Bacterial regulatory proteins, tetR family BSQ33_01400 PF18693 TRAM domain BSQ33_01400 PF00919 Uncharacterized protein family UPF0004 BSQ33_01400 PF04055 Radical SAM superfamily BSQ33_01420 PF00012 Hsp70 protein BSQ33_01425 PF00012 Hsp70 protein BSQ33_01435 PF06508 Queuosine biosynthesis protein QueC BSQ33_01440 PF04055 Radical SAM superfamily BSQ33_01455 PF16177 Acetyl-coenzyme A synthetase N-terminus BSQ33_01455 PF13193 AMP-binding enzyme C-terminal domain BSQ33_01455 PF00501 AMP-binding enzyme BSQ33_01460 PF03972 MmgE/PrpD family BSQ33_01465 PF00285 Citrate synthase, C-terminal domain BSQ33_01475 PF00392 Bacterial regulatory proteins, gntR family BSQ33_01475 PF07729 FCD domain BSQ33_01480 PF13302 Acetyltransferase (GNAT) domain BSQ33_01485 PF00158 Sigma-54 interaction domain BSQ33_01485 PF18024 Helix-turn-helix domain BSQ33_01490 PF05128 Domain of unknown function (DUF697) BSQ33_01495 PF04317 YcjX-like family, DUF463 BSQ33_01505 PF00892 EamA-like transporter family BSQ33_01530 PF04715 Anthranilate synthase component I, N terminal region BSQ33_01530 PF00425 chorismate binding enzyme BSQ33_01535 PF00293 NUDIX domain BSQ33_01545 PF03313 Serine dehydratase alpha chain BSQ33_01545 PF03315 Serine dehydratase beta chain BSQ33_01550 PF01242 6-pyruvoyl tetrahydropterin synthase BSQ33_01555 PF00175 Oxidoreductase NAD-binding domain BSQ33_01555 PF00042 Globin BSQ33_01555 PF00970 Oxidoreductase FAD-binding domain BSQ33_01560 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BSQ33_01560 PF00355 Rieske [2Fe-2S] domain BSQ33_01570 PF02028 BCCT, betaine/carnitine/choline family transporter BSQ33_01575 PF02310 B12 binding domain BSQ33_01575 PF02607 B12 binding domain BSQ33_01575 PF02965 Vitamin B12 dependent methionine synthase, activation domain BSQ33_01575 PF00809 Pterin binding enzyme BSQ33_01575 PF02574 Homocysteine S-methyltransferase BSQ33_01590 PF01032 FecCD transport family BSQ33_01595 PF01032 FecCD transport family BSQ33_01600 PF00005 ABC transporter BSQ33_01605 PF03466 LysR substrate binding domain BSQ33_01605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_01610 PF00593 TonB dependent receptor BSQ33_01610 PF07715 TonB-dependent Receptor Plug Domain BSQ33_01615 PF03466 LysR substrate binding domain BSQ33_01615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_01620 PF07859 alpha/beta hydrolase fold BSQ33_01625 PF12729 Four helix bundle sensory module for signal transduction BSQ33_01625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_01625 PF00672 HAMP domain BSQ33_01685 PF03527 RHS protein BSQ33_01685 PF05593 RHS Repeat BSQ33_01790 PF03527 RHS protein BSQ33_01790 PF05593 RHS Repeat BSQ33_01835 PF16671 Actin cross-linking domain BSQ33_01835 PF04717 Type VI secretion system, phage-baseplate injector BSQ33_01845 PF02028 BCCT, betaine/carnitine/choline family transporter BSQ33_01855 PF00766 Electron transfer flavoprotein FAD-binding domain BSQ33_01855 PF01012 Electron transfer flavoprotein domain BSQ33_01860 PF13183 4Fe-4S dicluster domain BSQ33_01860 PF02754 Cysteine-rich domain BSQ33_01865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BSQ33_01885 PF01965 DJ-1/PfpI family BSQ33_01885 PF12833 Helix-turn-helix domain BSQ33_01890 PF03315 Serine dehydratase beta chain BSQ33_01890 PF03313 Serine dehydratase alpha chain BSQ33_01895 PF00551 Formyl transferase BSQ33_01900 PF04268 Sarcosine oxidase, gamma subunit family BSQ33_01905 PF07992 Pyridine nucleotide-disulphide oxidoreductase BSQ33_01905 PF08669 Glycine cleavage T-protein C-terminal barrel domain BSQ33_01905 PF01571 Aminomethyltransferase folate-binding domain BSQ33_01905 PF17806 Sarcosine oxidase A3 domain BSQ33_01915 PF01266 FAD dependent oxidoreductase BSQ33_01920 PF00464 Serine hydroxymethyltransferase BSQ33_01925 PF00152 tRNA synthetases class II (D, K and N) BSQ33_01925 PF01336 OB-fold nucleic acid binding domain BSQ33_01930 PF00155 Aminotransferase class I and II BSQ33_01940 PF03707 Bacterial signalling protein N terminal repeat BSQ33_01940 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_01940 PF00563 EAL domain BSQ33_01945 PF07969 Amidohydrolase family BSQ33_01950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_01950 PF00672 HAMP domain BSQ33_01950 PF12729 Four helix bundle sensory module for signal transduction BSQ33_01955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_01955 PF12729 Four helix bundle sensory module for signal transduction BSQ33_01955 PF00672 HAMP domain BSQ33_01970 PF02470 MlaD protein BSQ33_01975 PF04403 Paraquat-inducible protein A BSQ33_01985 PF02685 Glucokinase BSQ33_01995 PF00155 Aminotransferase class I and II BSQ33_02000 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BSQ33_02010 PF07885 Ion channel BSQ33_02010 PF02254 TrkA-N domain BSQ33_02030 PF01320 Colicin immunity protein / pyocin immunity protein BSQ33_02035 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 BSQ33_02035 PF03515 Colicin-like bacteriocin tRNase domain BSQ33_02045 PF00132 Bacterial transferase hexapeptide (six repeats) BSQ33_02045 PF12804 MobA-like NTP transferase domain BSQ33_02065 PF01177 Asp/Glu/Hydantoin racemase BSQ33_02070 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_02075 PF14785 Maltose transport system permease protein MalF P2 domain BSQ33_02075 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_02080 PF01547 Bacterial extracellular solute-binding protein BSQ33_02085 PF08402 TOBE domain BSQ33_02085 PF00005 ABC transporter BSQ33_02090 PF02446 4-alpha-glucanotransferase BSQ33_02095 PF00343 Carbohydrate phosphorylase BSQ33_02100 PF17874 MalT-like TPR region BSQ33_02100 PF00196 Bacterial regulatory proteins, luxR family BSQ33_02130 PF17151 Periplasmic sensor domain BSQ33_02130 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_02140 PF01584 CheW-like domain BSQ33_02140 PF00072 Response regulator receiver domain BSQ33_02150 PF04204 Homoserine O-succinyltransferase BSQ33_02165 PF03466 LysR substrate binding domain BSQ33_02165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_02170 PF07690 Major Facilitator Superfamily BSQ33_02185 PF02321 Outer membrane efflux protein BSQ33_02190 PF05736 OprF membrane domain BSQ33_02190 PF00691 OmpA family BSQ33_02200 PF00005 ABC transporter BSQ33_02205 PF01032 FecCD transport family BSQ33_02210 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BSQ33_02215 PF02654 Cobalamin-5-phosphate synthase BSQ33_02355 PF00717 Peptidase S24-like BSQ33_02355 PF01381 Helix-turn-helix BSQ33_02360 PF00929 Exonuclease BSQ33_02360 PF08411 Exonuclease C-terminal BSQ33_02365 PF03788 LrgA family BSQ33_02370 PF04172 LrgB-like family BSQ33_02375 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region BSQ33_02375 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BSQ33_02380 PF02222 ATP-grasp domain BSQ33_02385 PF05724 Thiopurine S-methyltransferase (TPMT) BSQ33_02390 PF00216 Bacterial DNA-binding protein BSQ33_02395 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BSQ33_02395 PF03483 B3/4 domain BSQ33_02395 PF03484 tRNA synthetase B5 domain BSQ33_02395 PF01588 Putative tRNA binding domain BSQ33_02395 PF03147 Ferredoxin-fold anticodon binding domain BSQ33_02400 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BSQ33_02400 PF01409 tRNA synthetases class II core domain (F) BSQ33_02430 PF01370 NAD dependent epimerase/dehydratase family BSQ33_02435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BSQ33_02435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BSQ33_02460 PF00265 Thymidine kinase BSQ33_02465 PF02938 GAD domain BSQ33_02465 PF01336 OB-fold nucleic acid binding domain BSQ33_02465 PF00152 tRNA synthetases class II (D, K and N) BSQ33_02470 PF01904 Protein of unknown function DUF72 BSQ33_02475 PF13649 Methyltransferase domain BSQ33_02480 PF08003 Protein of unknown function (DUF1698) BSQ33_02485 PF18030 RimK PreATP-grasp domain BSQ33_02485 PF08443 RimK-like ATP-grasp domain BSQ33_02495 PF08443 RimK-like ATP-grasp domain BSQ33_02495 PF18030 RimK PreATP-grasp domain BSQ33_02500 PF00535 Glycosyl transferase family 2 BSQ33_02510 PF16330 MukB hinge domain BSQ33_02510 PF04310 MukB N-terminal BSQ33_02515 PF04288 MukE-like family BSQ33_02530 PF02698 DUF218 domain BSQ33_02535 PF00356 Bacterial regulatory proteins, lacI family BSQ33_02540 PF04993 TfoX N-terminal domain BSQ33_02540 PF04994 TfoX C-terminal domain BSQ33_02545 PF08323 Starch synthase catalytic domain BSQ33_02545 PF00534 Glycosyl transferases group 1 BSQ33_02550 PF00483 Nucleotidyl transferase BSQ33_02555 PF01131 DNA topoisomerase BSQ33_02555 PF01751 Toprim domain BSQ33_02555 PF08272 Topoisomerase I zinc-ribbon-like BSQ33_02555 PF01396 Topoisomerase DNA binding C4 zinc finger BSQ33_02560 PF10692 Protein of unknown function (DUF2498) BSQ33_02565 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BSQ33_02580 PF04377 Arginine-tRNA-protein transferase, C terminus BSQ33_02580 PF04376 Arginine-tRNA-protein transferase, N terminus BSQ33_02585 PF01176 Translation initiation factor 1A / IF-1 BSQ33_02590 PF17871 AAA lid domain BSQ33_02590 PF02861 Clp amino terminal domain, pathogenicity island component BSQ33_02590 PF07724 AAA domain (Cdc48 subfamily) BSQ33_02590 PF00004 ATPase family associated with various cellular activities (AAA) BSQ33_02590 PF10431 C-terminal, D2-small domain, of ClpB protein BSQ33_02595 PF02617 ATP-dependent Clp protease adaptor protein ClpS BSQ33_02600 PF00313 'Cold-shock' DNA-binding domain BSQ33_02605 PF03971 Monomeric isocitrate dehydrogenase BSQ33_02610 PF00849 RNA pseudouridylate synthase BSQ33_02615 PF01502 Phosphoribosyl-AMP cyclohydrolase BSQ33_02615 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BSQ33_02620 PF00977 Histidine biosynthesis protein BSQ33_02625 PF00977 Histidine biosynthesis protein BSQ33_02630 PF00117 Glutamine amidotransferase class-I BSQ33_02635 PF00475 Imidazoleglycerol-phosphate dehydratase BSQ33_02635 PF08645 Polynucleotide kinase 3 phosphatase BSQ33_02640 PF00155 Aminotransferase class I and II BSQ33_02645 PF00815 Histidinol dehydrogenase BSQ33_02650 PF08029 HisG, C-terminal domain BSQ33_02650 PF01634 ATP phosphoribosyltransferase BSQ33_02655 PF03553 Na+/H+ antiporter family BSQ33_02660 PF00816 H-NS histone family BSQ33_02665 PF00294 pfkB family carbohydrate kinase BSQ33_02675 PF04356 Protein of unknown function (DUF489) BSQ33_02680 PF00206 Lyase BSQ33_02680 PF08328 Adenylosuccinate lyase C-terminal BSQ33_02685 PF00665 Integrase core domain BSQ33_02685 PF13276 HTH-like domain BSQ33_02685 PF13333 Integrase core domain BSQ33_02695 PF01435 Peptidase family M48 BSQ33_02700 PF03738 Glutathionylspermidine synthase preATP-grasp BSQ33_02710 PF04012 PspA/IM30 family BSQ33_02715 PF00764 Arginosuccinate synthase BSQ33_02725 PF03994 Domain of Unknown Function (DUF350) BSQ33_02730 PF06693 Protein of unknown function (DUF1190) BSQ33_02740 PF08241 Methyltransferase domain BSQ33_02745 PF00155 Aminotransferase class I and II BSQ33_02750 PF04055 Radical SAM superfamily BSQ33_02750 PF06968 Biotin and Thiamin Synthesis associated domain BSQ33_02755 PF00202 Aminotransferase class-III BSQ33_02770 PF01168 Alanine racemase, N-terminal domain BSQ33_02770 PF01757 Acyltransferase family BSQ33_02770 PF00842 Alanine racemase, C-terminal domain BSQ33_02790 PF00005 ABC transporter BSQ33_02790 PF12848 ABC transporter BSQ33_02810 PF00672 HAMP domain BSQ33_02810 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_02810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_02815 PF00486 Transcriptional regulatory protein, C terminal BSQ33_02815 PF00072 Response regulator receiver domain BSQ33_02820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BSQ33_02820 PF02403 Seryl-tRNA synthetase N-terminal domain BSQ33_02825 PF00004 ATPase family associated with various cellular activities (AAA) BSQ33_02825 PF16193 AAA C-terminal domain BSQ33_02825 PF12002 MgsA AAA+ ATPase C terminal BSQ33_02830 PF03548 Outer membrane lipoprotein carrier protein LolA BSQ33_02835 PF07516 SecA Wing and Scaffold domain BSQ33_02835 PF01043 SecA preprotein cross-linking domain BSQ33_02835 PF02810 SEC-C motif BSQ33_02835 PF07517 SecA DEAD-like domain BSQ33_02840 PF01207 Dihydrouridine synthase (Dus) BSQ33_02845 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_02845 PF00072 Response regulator receiver domain BSQ33_02850 PF00005 ABC transporter BSQ33_02855 PF02653 Branched-chain amino acid transport system / permease component BSQ33_02865 PF04217 Protein of unknown function, DUF412 BSQ33_02870 PF00871 Acetokinase family BSQ33_02875 PF07085 DRTGG domain BSQ33_02875 PF01515 Phosphate acetyl/butaryl transferase BSQ33_02880 PF13409 Glutathione S-transferase, N-terminal domain BSQ33_02885 PF00294 pfkB family carbohydrate kinase BSQ33_02890 PF08244 Glycosyl hydrolases family 32 C terminal BSQ33_02890 PF00251 Glycosyl hydrolases family 32 N-terminal domain BSQ33_02895 PF00356 Bacterial regulatory proteins, lacI family BSQ33_02900 PF00367 phosphotransferase system, EIIB BSQ33_02900 PF02378 Phosphotransferase system, EIIC BSQ33_02905 PF00672 HAMP domain BSQ33_02905 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_02905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_02910 PF00486 Transcriptional regulatory protein, C terminal BSQ33_02910 PF00072 Response regulator receiver domain BSQ33_02915 PF00005 ABC transporter BSQ33_02920 PF01032 FecCD transport family BSQ33_02925 PF08543 Phosphomethylpyrimidine kinase BSQ33_02930 PF00072 Response regulator receiver domain BSQ33_02930 PF02954 Bacterial regulatory protein, Fis family BSQ33_02930 PF00158 Sigma-54 interaction domain BSQ33_02935 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_02935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_02940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_02940 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_02940 PF00989 PAS fold BSQ33_02950 PF00072 Response regulator receiver domain BSQ33_02965 PF05368 NmrA-like family BSQ33_02975 PF02321 Outer membrane efflux protein BSQ33_02980 PF00873 AcrB/AcrD/AcrF family BSQ33_02985 PF00529 HlyD membrane-fusion protein of T1SS BSQ33_02985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BSQ33_02990 PF01063 Amino-transferase class IV BSQ33_02995 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BSQ33_02995 PF13378 Enolase C-terminal domain-like BSQ33_03005 PF00842 Alanine racemase, C-terminal domain BSQ33_03005 PF01168 Alanine racemase, N-terminal domain BSQ33_03010 PF03746 LamB/YcsF family BSQ33_03015 PF02626 Carboxyltransferase domain, subdomain A and B BSQ33_03020 PF02682 Carboxyltransferase domain, subdomain C and D BSQ33_03025 PF00563 EAL domain BSQ33_03025 PF12792 CSS motif domain associated with EAL BSQ33_03030 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BSQ33_03030 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BSQ33_03035 PF02013 Cellulose or protein binding domain BSQ33_03035 PF00150 Cellulase (glycosyl hydrolase family 5) BSQ33_03035 PF00553 Cellulose binding domain BSQ33_03040 PF04616 Glycosyl hydrolases family 43 BSQ33_03065 PF07690 Major Facilitator Superfamily BSQ33_03075 PF01810 LysE type translocator BSQ33_03080 PF10011 Predicted membrane protein (DUF2254) BSQ33_03085 PF01679 Proteolipid membrane potential modulator BSQ33_03090 PF00579 tRNA synthetases class I (W and Y) BSQ33_03095 PF00196 Bacterial regulatory proteins, luxR family BSQ33_03115 PF13847 Methyltransferase domain BSQ33_03125 PF01497 Periplasmic binding protein BSQ33_03125 PF12833 Helix-turn-helix domain BSQ33_03140 PF00041 Fibronectin type III domain BSQ33_03140 PF00553 Cellulose binding domain BSQ33_03140 PF01341 Glycosyl hydrolases family 6 BSQ33_03145 PF02322 Cytochrome bd terminal oxidase subunit II BSQ33_03175 PF00781 Diacylglycerol kinase catalytic domain BSQ33_03195 PF04972 BON domain BSQ33_03200 PF00072 Response regulator receiver domain BSQ33_03200 PF02954 Bacterial regulatory protein, Fis family BSQ33_03200 PF00158 Sigma-54 interaction domain BSQ33_03220 PF16957 Malonate decarboxylase, alpha subunit, transporter BSQ33_03225 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BSQ33_03230 PF01039 Carboxyl transferase domain BSQ33_03245 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG BSQ33_03250 PF00698 Acyl transferase domain BSQ33_03255 PF03466 LysR substrate binding domain BSQ33_03255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_03260 PF07690 Major Facilitator Superfamily BSQ33_03265 PF12833 Helix-turn-helix domain BSQ33_03265 PF02311 AraC-like ligand binding domain BSQ33_03270 PF01738 Dienelactone hydrolase family BSQ33_03280 PF07693 KAP family P-loop domain BSQ33_03295 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family BSQ33_03305 PF13276 HTH-like domain BSQ33_03305 PF00665 Integrase core domain BSQ33_03305 PF13333 Integrase core domain BSQ33_03315 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BSQ33_03330 PF13404 AsnC-type helix-turn-helix domain BSQ33_03330 PF01037 Lrp/AsnC ligand binding domain BSQ33_03340 PF00857 Isochorismatase family BSQ33_03345 PF06426 Serine acetyltransferase, N-terminal BSQ33_03345 PF00132 Bacterial transferase hexapeptide (six repeats) BSQ33_03360 PF07690 Major Facilitator Superfamily BSQ33_03365 PF03601 Conserved hypothetical protein 698 BSQ33_03370 PF13193 AMP-binding enzyme C-terminal domain BSQ33_03370 PF00501 AMP-binding enzyme BSQ33_03375 PF13378 Enolase C-terminal domain-like BSQ33_03380 PF00378 Enoyl-CoA hydratase/isomerase BSQ33_03385 PF12697 Alpha/beta hydrolase family BSQ33_03390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BSQ33_03390 PF16582 Middle domain of thiamine pyrophosphate BSQ33_03390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BSQ33_03395 PF00425 chorismate binding enzyme BSQ33_03400 PF00155 Aminotransferase class I and II BSQ33_03405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BSQ33_03405 PF00005 ABC transporter BSQ33_03410 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_03415 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_03420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BSQ33_03430 PF00672 HAMP domain BSQ33_03430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_03445 PF17391 Urocanase N-terminal domain BSQ33_03445 PF17392 Urocanase C-terminal domain BSQ33_03445 PF01175 Urocanase Rossmann-like domain BSQ33_03455 PF01979 Amidohydrolase family BSQ33_03460 PF00221 Aromatic amino acid lyase BSQ33_03465 PF07702 UTRA domain BSQ33_03465 PF00392 Bacterial regulatory proteins, gntR family BSQ33_03530 PF16925 Tetracyclin repressor-like, C-terminal domain BSQ33_03530 PF00440 Bacterial regulatory proteins, tetR family BSQ33_03575 PF00497 Bacterial extracellular solute-binding proteins, family 3 BSQ33_03580 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_03585 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_03590 PF00005 ABC transporter BSQ33_03595 PF01112 Asparaginase BSQ33_03610 PF05638 Type VI secretion system effector, Hcp BSQ33_03615 PF03466 LysR substrate binding domain BSQ33_03615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_03620 PF01810 LysE type translocator BSQ33_03625 PF00710 Asparaginase, N-terminal BSQ33_03625 PF17763 Glutaminase/Asparaginase C-terminal domain BSQ33_03630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_03635 PF01970 Tripartite tricarboxylate transporter TctA family BSQ33_03645 PF03401 Tripartite tricarboxylate transporter family receptor BSQ33_03650 PF00701 Dihydrodipicolinate synthetase family BSQ33_03655 PF00294 pfkB family carbohydrate kinase BSQ33_03660 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_03660 PF00072 Response regulator receiver domain BSQ33_03675 PF00135 Carboxylesterase family BSQ33_03680 PF05971 RNA methyltransferase BSQ33_03695 PF13419 Haloacid dehalogenase-like hydrolase BSQ33_03700 PF00563 EAL domain BSQ33_03700 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_03700 PF03707 Bacterial signalling protein N terminal repeat BSQ33_03705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BSQ33_03710 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_03715 PF12911 N-terminal TM domain of oligopeptide transport permease C BSQ33_03715 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_03720 PF00005 ABC transporter BSQ33_03720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BSQ33_03725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BSQ33_03725 PF00005 ABC transporter BSQ33_03730 PF02311 AraC-like ligand binding domain BSQ33_03730 PF12833 Helix-turn-helix domain BSQ33_03740 PF00107 Zinc-binding dehydrogenase BSQ33_03740 PF16884 N-terminal domain of oxidoreductase BSQ33_03750 PF00291 Pyridoxal-phosphate dependent enzyme BSQ33_03755 PF01751 Toprim domain BSQ33_03755 PF01131 DNA topoisomerase BSQ33_03760 PF00462 Glutaredoxin BSQ33_03765 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BSQ33_03765 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BSQ33_03780 PF04333 MlaA lipoprotein BSQ33_03790 PF01584 CheW-like domain BSQ33_03805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_03805 PF01627 Hpt domain BSQ33_03805 PF02895 Signal transducing histidine kinase, homodimeric domain BSQ33_03805 PF01584 CheW-like domain BSQ33_03805 PF07194 P2 response regulator binding domain BSQ33_03810 PF04344 Chemotaxis phosphatase, CheZ BSQ33_03815 PF00072 Response regulator receiver domain BSQ33_03820 PF04545 Sigma-70, region 4 BSQ33_03820 PF04539 Sigma-70 region 3 BSQ33_03820 PF04542 Sigma-70 region 2 BSQ33_03825 PF10609 NUBPL iron-transfer P-loop NTPase BSQ33_03830 PF00448 SRP54-type protein, GTPase domain BSQ33_03835 PF00771 FHIPEP family BSQ33_03840 PF00300 Histidine phosphatase superfamily (branch 1) BSQ33_03845 PF00675 Insulinase (Peptidase family M16) BSQ33_03845 PF05193 Peptidase M16 inactive domain BSQ33_03845 PF16187 Middle or third domain of peptidase_M16 BSQ33_03850 PF06185 YecM protein BSQ33_03855 PF00750 tRNA synthetases class I (R) BSQ33_03855 PF05746 DALR anticodon binding domain BSQ33_03855 PF03485 Arginyl tRNA synthetase N terminal domain BSQ33_03875 PF07670 Nucleoside recognition BSQ33_03875 PF02421 Ferrous iron transport protein B BSQ33_03875 PF07664 Ferrous iron transport protein B C terminus BSQ33_03880 PF04023 FeoA domain BSQ33_03885 PF01297 Zinc-uptake complex component A periplasmic BSQ33_03890 PF00005 ABC transporter BSQ33_03895 PF00950 ABC 3 transport family BSQ33_03900 PF02629 CoA binding domain BSQ33_03900 PF00549 CoA-ligase BSQ33_03905 PF00549 CoA-ligase BSQ33_03905 PF08442 ATP-grasp domain BSQ33_03910 PF00364 Biotin-requiring enzyme BSQ33_03910 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BSQ33_03910 PF02817 e3 binding domain BSQ33_03915 PF16870 2-oxoglutarate dehydrogenase C-terminal BSQ33_03915 PF16078 2-oxoglutarate dehydrogenase N-terminus BSQ33_03915 PF02779 Transketolase, pyrimidine binding domain BSQ33_03915 PF00676 Dehydrogenase E1 component BSQ33_03920 PF13085 2Fe-2S iron-sulfur cluster binding domain BSQ33_03925 PF00890 FAD binding domain BSQ33_03925 PF02910 Fumarate reductase flavoprotein C-term BSQ33_03930 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BSQ33_03935 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BSQ33_03940 PF00285 Citrate synthase, C-terminal domain BSQ33_03945 PF01784 NIF3 (NGG1p interacting factor 3) BSQ33_03965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BSQ33_03965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BSQ33_03965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BSQ33_03965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BSQ33_03970 PF03925 SeqA protein C-terminal domain BSQ33_03970 PF17206 SeqA protein N-terminal domain BSQ33_03975 PF00561 alpha/beta hydrolase fold BSQ33_03980 PF00258 Flavodoxin BSQ33_03985 PF01475 Ferric uptake regulator family BSQ33_03990 PF02774 Semialdehyde dehydrogenase, dimerisation domain BSQ33_03990 PF01118 Semialdehyde dehydrogenase, NAD binding domain BSQ33_03995 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BSQ33_03995 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BSQ33_03995 PF11890 Domain of unknown function (DUF3410) BSQ33_04000 PF02801 Beta-ketoacyl synthase, C-terminal domain BSQ33_04000 PF00109 Beta-ketoacyl synthase, N-terminal domain BSQ33_04005 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BSQ33_04005 PF01266 FAD dependent oxidoreductase BSQ33_04010 PF03358 NADPH-dependent FMN reductase BSQ33_04015 PF08891 YfcL protein BSQ33_04020 PF04315 Elongation factor P hydroxylase BSQ33_04025 PF01264 Chorismate synthase BSQ33_04030 PF05175 Methyltransferase small domain BSQ33_04035 PF01713 Smr domain BSQ33_04040 PF01312 FlhB HrpN YscU SpaS Family BSQ33_04045 PF01311 Bacterial export proteins, family 1 BSQ33_04050 PF01313 Bacterial export proteins, family 3 BSQ33_04055 PF00813 FliP family BSQ33_04060 PF04347 Flagellar biosynthesis protein, FliO BSQ33_04065 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BSQ33_04070 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BSQ33_04070 PF02154 Flagellar motor switch protein FliM BSQ33_04075 PF03748 Flagellar basal body-associated protein FliL BSQ33_04090 PF18269 T3SS EscN ATPase C-terminal domain BSQ33_04090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BSQ33_04100 PF14841 FliG middle domain BSQ33_04100 PF14842 FliG N-terminal domain BSQ33_04100 PF01706 FliG C-terminal domain BSQ33_04105 PF01514 Secretory protein of YscJ/FliF family BSQ33_04105 PF08345 Flagellar M-ring protein C-terminal BSQ33_04110 PF02049 Flagellar hook-basal body complex protein FliE BSQ33_04115 PF02954 Bacterial regulatory protein, Fis family BSQ33_04115 PF00158 Sigma-54 interaction domain BSQ33_04120 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_04120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_04125 PF00158 Sigma-54 interaction domain BSQ33_04125 PF00072 Response regulator receiver domain BSQ33_04125 PF02954 Bacterial regulatory protein, Fis family BSQ33_04130 PF02561 Flagellar protein FliS BSQ33_04140 PF07195 Flagellar hook-associated protein 2 C-terminus BSQ33_04140 PF07196 Flagellin hook IN motif BSQ33_04140 PF02465 Flagellar hook-associated protein 2 N-terminus BSQ33_04145 PF03646 FlaG protein BSQ33_04150 PF07196 Flagellin hook IN motif BSQ33_04150 PF00700 Bacterial flagellin C-terminal helical region BSQ33_04150 PF00669 Bacterial flagellin N-terminal helical region BSQ33_04155 PF00669 Bacterial flagellin N-terminal helical region BSQ33_04155 PF07196 Flagellin hook IN motif BSQ33_04155 PF00700 Bacterial flagellin C-terminal helical region BSQ33_04160 PF00669 Bacterial flagellin N-terminal helical region BSQ33_04160 PF07196 Flagellin hook IN motif BSQ33_04160 PF00700 Bacterial flagellin C-terminal helical region BSQ33_04165 PF04261 Dyp-type peroxidase family BSQ33_04170 PF04205 FMN-binding domain BSQ33_04180 PF00085 Thioredoxin BSQ33_04185 PF12704 MacB-like periplasmic core domain BSQ33_04185 PF02687 FtsX-like permease family BSQ33_04185 PF00005 ABC transporter BSQ33_04195 PF02687 FtsX-like permease family BSQ33_04195 PF12704 MacB-like periplasmic core domain BSQ33_04205 PF10634 Fe2+ transport protein BSQ33_04210 PF03239 Iron permease FTR1 family BSQ33_04220 PF03960 ArsC family BSQ33_04225 PF07687 Peptidase dimerisation domain BSQ33_04225 PF01546 Peptidase family M20/M25/M40 BSQ33_04230 PF02557 D-alanyl-D-alanine carboxypeptidase BSQ33_04240 PF06804 NlpB/DapX lipoprotein BSQ33_04245 PF00701 Dihydrodipicolinate synthetase family BSQ33_04250 PF00578 AhpC/TSA family BSQ33_04255 PF00672 HAMP domain BSQ33_04255 PF02743 Cache domain BSQ33_04255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_04260 PF01594 AI-2E family transporter BSQ33_04265 PF13181 Tetratricopeptide repeat BSQ33_04265 PF01435 Peptidase family M48 BSQ33_04270 PF03960 ArsC family BSQ33_04275 PF03358 NADPH-dependent FMN reductase BSQ33_04285 PF00860 Permease family BSQ33_04290 PF04073 Aminoacyl-tRNA editing domain BSQ33_04295 PF00149 Calcineurin-like phosphoesterase BSQ33_04295 PF02872 5'-nucleotidase, C-terminal domain BSQ33_04300 PF00793 DAHP synthetase I family BSQ33_04305 PF13369 Transglutaminase-like superfamily BSQ33_04310 PF04247 Invasion gene expression up-regulator, SirB BSQ33_04315 PF17827 PrmC N-terminal domain BSQ33_04315 PF13847 Methyltransferase domain BSQ33_04320 PF00472 RF-1 domain BSQ33_04320 PF03462 PCRF domain BSQ33_04330 PF03550 Outer membrane lipoprotein LolB BSQ33_04335 PF08544 GHMP kinases C terminal BSQ33_04335 PF00288 GHMP kinases N terminal domain BSQ33_04340 PF14572 Phosphoribosyl synthetase-associated domain BSQ33_04340 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BSQ33_04345 PF01195 Peptidyl-tRNA hydrolase BSQ33_04350 PF01926 50S ribosome-binding GTPase BSQ33_04350 PF06071 Protein of unknown function (DUF933) BSQ33_04420 PF07196 Flagellin hook IN motif BSQ33_04420 PF00700 Bacterial flagellin C-terminal helical region BSQ33_04420 PF00669 Bacterial flagellin N-terminal helical region BSQ33_04425 PF07196 Flagellin hook IN motif BSQ33_04425 PF00700 Bacterial flagellin C-terminal helical region BSQ33_04425 PF00669 Bacterial flagellin N-terminal helical region BSQ33_04435 PF13333 Integrase core domain BSQ33_04435 PF00665 Integrase core domain BSQ33_04435 PF13276 HTH-like domain BSQ33_04450 PF07196 Flagellin hook IN motif BSQ33_04450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BSQ33_04455 PF10135 Rod binding protein BSQ33_04455 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BSQ33_04465 PF02107 Flagellar L-ring protein BSQ33_04470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BSQ33_04470 PF00460 Flagella basal body rod protein BSQ33_04475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BSQ33_04475 PF00460 Flagella basal body rod protein BSQ33_04480 PF07559 Flagellar basal body protein FlaE BSQ33_04480 PF00460 Flagella basal body rod protein BSQ33_04480 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BSQ33_04485 PF03963 Flagellar hook capping protein - N-terminal region BSQ33_04485 PF13860 FlgD Ig-like domain BSQ33_04485 PF13861 FlgD Tudor-like domain BSQ33_04490 PF00460 Flagella basal body rod protein BSQ33_04490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BSQ33_04495 PF00460 Flagella basal body rod protein BSQ33_04500 PF01739 CheR methyltransferase, SAM binding domain BSQ33_04500 PF03705 CheR methyltransferase, all-alpha domain BSQ33_04505 PF00072 Response regulator receiver domain BSQ33_04505 PF01584 CheW-like domain BSQ33_04550 PF03922 OmpW family BSQ33_04565 PF01047 MarR family BSQ33_04575 PF00691 OmpA family BSQ33_04575 PF01389 OmpA-like transmembrane domain BSQ33_04580 PF00749 tRNA synthetases class I (E and Q), catalytic domain BSQ33_04585 PF00403 Heavy-metal-associated domain BSQ33_04590 PF01963 TraB family BSQ33_04600 PF01713 Smr domain BSQ33_04615 PF00551 Formyl transferase BSQ33_04620 PF00293 NUDIX domain BSQ33_04625 PF13230 Glutamine amidotransferases class-II BSQ33_04630 PF13580 SIS domain BSQ33_04635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BSQ33_04635 PF02770 Acyl-CoA dehydrogenase, middle domain BSQ33_04635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BSQ33_04635 PF09317 Domain of unknown function (DUF1974) BSQ33_04645 PF00929 Exonuclease BSQ33_04650 PF00075 RNase H BSQ33_04655 PF08241 Methyltransferase domain BSQ33_04660 PF16123 Hydroxyacylglutathione hydrolase C-terminus BSQ33_04660 PF00753 Metallo-beta-lactamase superfamily BSQ33_04665 PF01476 LysM domain BSQ33_04665 PF01464 Transglycosylase SLT domain BSQ33_04675 PF00543 Nitrogen regulatory protein P-II BSQ33_04680 PF11734 TilS substrate C-terminal domain BSQ33_04680 PF01171 PP-loop family BSQ33_04680 PF09179 TilS substrate binding domain BSQ33_04685 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BSQ33_04690 PF14579 Helix-hairpin-helix motif BSQ33_04690 PF07733 Bacterial DNA polymerase III alpha NTPase domain BSQ33_04690 PF02811 PHP domain BSQ33_04690 PF01336 OB-fold nucleic acid binding domain BSQ33_04690 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BSQ33_04695 PF01351 Ribonuclease HII BSQ33_04700 PF02684 Lipid-A-disaccharide synthetase BSQ33_04705 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BSQ33_04705 PF00132 Bacterial transferase hexapeptide (six repeats) BSQ33_04710 PF07977 FabA-like domain BSQ33_04715 PF00132 Bacterial transferase hexapeptide (six repeats) BSQ33_04715 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BSQ33_04720 PF03938 Outer membrane protein (OmpH-like) BSQ33_04725 PF01103 Surface antigen BSQ33_04725 PF07244 Surface antigen variable number repeat BSQ33_04730 PF02163 Peptidase family M50 BSQ33_04730 PF17820 PDZ domain BSQ33_04735 PF13288 DXP reductoisomerase C-terminal domain BSQ33_04735 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BSQ33_04735 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BSQ33_04745 PF01255 Putative undecaprenyl diphosphate synthase BSQ33_04750 PF01765 Ribosome recycling factor BSQ33_04755 PF00696 Amino acid kinase family BSQ33_04760 PF00889 Elongation factor TS BSQ33_04765 PF00318 Ribosomal protein S2 BSQ33_04770 PF00557 Metallopeptidase family M24 BSQ33_04775 PF01909 Nucleotidyltransferase domain BSQ33_04775 PF01966 HD domain BSQ33_04775 PF08335 GlnD PII-uridylyltransferase BSQ33_04780 PF11944 Protein of unknown function (DUF3461) BSQ33_04785 PF04608 Phosphatidylglycerophosphatase A BSQ33_04790 PF02769 AIR synthase related protein, C-terminal domain BSQ33_04790 PF00586 AIR synthase related protein, N-terminal domain BSQ33_04795 PF01029 NusB family BSQ33_04800 PF00885 6,7-dimethyl-8-ribityllumazine synthase BSQ33_04805 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BSQ33_04805 PF00925 GTP cyclohydrolase II BSQ33_04810 PF00677 Lumazine binding domain BSQ33_04815 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BSQ33_04815 PF01872 RibD C-terminal domain BSQ33_04820 PF03477 ATP cone domain BSQ33_04825 PF00171 Aldehyde dehydrogenase family BSQ33_04830 PF01472 PUA domain BSQ33_04830 PF00696 Amino acid kinase family BSQ33_04835 PF07417 Sigma factor-binding transcriptional regulator Crl BSQ33_04845 PF00156 Phosphoribosyl transferase domain BSQ33_04850 PF00860 Permease family BSQ33_04855 PF01546 Peptidase family M20/M25/M40 BSQ33_04855 PF07687 Peptidase dimerisation domain BSQ33_04860 PF18030 RimK PreATP-grasp domain BSQ33_04860 PF08443 RimK-like ATP-grasp domain BSQ33_04865 PF08443 RimK-like ATP-grasp domain BSQ33_04865 PF18030 RimK PreATP-grasp domain BSQ33_04870 PF00209 Sodium:neurotransmitter symporter family BSQ33_04875 PF11799 impB/mucB/samB family C-terminal domain BSQ33_04875 PF00817 impB/mucB/samB family BSQ33_04875 PF11798 IMS family HHH motif BSQ33_04880 PF01551 Peptidase family M23 BSQ33_04885 PF04055 Radical SAM superfamily BSQ33_04895 PF00175 Oxidoreductase NAD-binding domain BSQ33_04895 PF00111 2Fe-2S iron-sulfur cluster binding domain BSQ33_04895 PF00970 Oxidoreductase FAD-binding domain BSQ33_04900 PF02508 Rnf-Nqr subunit, membrane protein BSQ33_04910 PF04205 FMN-binding domain BSQ33_04915 PF03116 NQR2, RnfD, RnfE family BSQ33_04920 PF11973 NQRA C-terminal domain BSQ33_04920 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) BSQ33_04925 PF01722 BolA-like protein BSQ33_04930 PF05175 Methyltransferase small domain BSQ33_04940 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BSQ33_04945 PF07690 Major Facilitator Superfamily BSQ33_04950 PF02558 Ketopantoate reductase PanE/ApbA BSQ33_04950 PF08546 Ketopantoate reductase PanE/ApbA C terminal BSQ33_04955 PF01965 DJ-1/PfpI family BSQ33_04960 PF00266 Aminotransferase class-V BSQ33_04965 PF02657 Fe-S metabolism associated domain BSQ33_04970 PF00899 ThiF family BSQ33_04975 PF06725 3D domain BSQ33_04975 PF03562 MltA specific insert domain BSQ33_04980 PF00583 Acetyltransferase (GNAT) family BSQ33_04980 PF00696 Amino acid kinase family BSQ33_04990 PF13538 UvrD-like helicase C-terminal domain BSQ33_04995 PF12705 PD-(D/E)XK nuclease superfamily BSQ33_04995 PF13361 UvrD-like helicase C-terminal domain BSQ33_04995 PF00580 UvrD/REP helicase N-terminal domain BSQ33_05000 PF17946 RecC C-terminal domain BSQ33_05010 PF07130 YebG protein BSQ33_05015 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle BSQ33_05015 PF14602 Hexapeptide repeat of succinyl-transferase BSQ33_05025 PF00962 Adenosine/AMP deaminase BSQ33_05035 PF00356 Bacterial regulatory proteins, lacI family BSQ33_05040 PF00072 Response regulator receiver domain BSQ33_05045 PF00501 AMP-binding enzyme BSQ33_05055 PF03466 LysR substrate binding domain BSQ33_05055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_05060 PF14492 Elongation Factor G, domain II BSQ33_05060 PF03764 Elongation factor G, domain IV BSQ33_05060 PF00679 Elongation factor G C-terminus BSQ33_05060 PF03144 Elongation factor Tu domain 2 BSQ33_05060 PF00009 Elongation factor Tu GTP binding domain BSQ33_05065 PF18073 Rubredoxin metal binding domain BSQ33_05075 PF18429 Domain of unknown function (DUF5609) BSQ33_05085 PF01048 Phosphorylase superfamily BSQ33_05090 PF01791 DeoC/LacD family aldolase BSQ33_05095 PF01773 Na+ dependent nucleoside transporter N-terminus BSQ33_05095 PF07662 Na+ dependent nucleoside transporter C-terminus BSQ33_05095 PF07670 Nucleoside recognition BSQ33_05100 PF01026 TatD related DNase BSQ33_05105 PF03883 Peroxide stress protein YaaA BSQ33_05110 PF01235 Sodium:alanine symporter family BSQ33_05125 PF03167 Uracil DNA glycosylase superfamily BSQ33_05130 PF01261 Xylose isomerase-like TIM barrel BSQ33_05135 PF01228 Glycine radical BSQ33_05140 PF14821 Threonine synthase N terminus BSQ33_05140 PF00291 Pyridoxal-phosphate dependent enzyme BSQ33_05145 PF00288 GHMP kinases N terminal domain BSQ33_05145 PF08544 GHMP kinases C terminal BSQ33_05150 PF01842 ACT domain BSQ33_05150 PF00696 Amino acid kinase family BSQ33_05150 PF03447 Homoserine dehydrogenase, NAD binding domain BSQ33_05150 PF00742 Homoserine dehydrogenase BSQ33_05150 PF13840 ACT domain BSQ33_05155 PF03737 Aldolase/RraA BSQ33_05165 PF00486 Transcriptional regulatory protein, C terminal BSQ33_05165 PF00072 Response regulator receiver domain BSQ33_05170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_05170 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_05170 PF00072 Response regulator receiver domain BSQ33_05170 PF18415 Histidine kinase receptor ArcB trans-membrane domain BSQ33_05170 PF01627 Hpt domain BSQ33_05170 PF00989 PAS fold BSQ33_05175 PF00563 EAL domain BSQ33_05175 PF01590 GAF domain BSQ33_05175 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_05175 PF00360 Phytochrome region BSQ33_05180 PF16199 Radical_SAM C-terminal domain BSQ33_05180 PF04055 Radical SAM superfamily BSQ33_05185 PF01493 GXGXG motif BSQ33_05185 PF04898 Glutamate synthase central domain BSQ33_05185 PF00310 Glutamine amidotransferases class-II BSQ33_05185 PF01645 Conserved region in glutamate synthase BSQ33_05190 PF07992 Pyridine nucleotide-disulphide oxidoreductase BSQ33_05190 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BSQ33_05195 PF01493 GXGXG motif BSQ33_05195 PF04898 Glutamate synthase central domain BSQ33_05195 PF01645 Conserved region in glutamate synthase BSQ33_05195 PF00310 Glutamine amidotransferases class-II BSQ33_05200 PF07992 Pyridine nucleotide-disulphide oxidoreductase BSQ33_05200 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BSQ33_05205 PF01048 Phosphorylase superfamily BSQ33_05215 PF01497 Periplasmic binding protein BSQ33_05220 PF03458 UPF0126 domain BSQ33_05225 PF03466 LysR substrate binding domain BSQ33_05225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_05230 PF01925 Sulfite exporter TauE/SafE BSQ33_05235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BSQ33_05235 PF02142 MGS-like domain BSQ33_05235 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BSQ33_05240 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BSQ33_05240 PF00117 Glutamine amidotransferase class-I BSQ33_05245 PF05173 Dihydrodipicolinate reductase, C-terminus BSQ33_05245 PF01113 Dihydrodipicolinate reductase, N-terminus BSQ33_05250 PF00293 NUDIX domain BSQ33_05255 PF01043 SecA preprotein cross-linking domain BSQ33_05255 PF02810 SEC-C motif BSQ33_05255 PF07517 SecA DEAD-like domain BSQ33_05255 PF07516 SecA Wing and Scaffold domain BSQ33_05270 PF12327 FtsZ family, C-terminal domain BSQ33_05270 PF00091 Tubulin/FtsZ family, GTPase domain BSQ33_05275 PF02491 SHS2 domain inserted in FTSA BSQ33_05280 PF03799 Cell division protein FtsQ BSQ33_05280 PF08478 POTRA domain, FtsQ-type BSQ33_05285 PF02875 Mur ligase family, glutamate ligase domain BSQ33_05285 PF08245 Mur ligase middle domain BSQ33_05285 PF01225 Mur ligase family, catalytic domain BSQ33_05290 PF04101 Glycosyltransferase family 28 C-terminal domain BSQ33_05290 PF03033 Glycosyltransferase family 28 N-terminal domain BSQ33_05295 PF01098 Cell cycle protein BSQ33_05300 PF08245 Mur ligase middle domain BSQ33_05300 PF02875 Mur ligase family, glutamate ligase domain BSQ33_05305 PF00953 Glycosyl transferase family 4 BSQ33_05305 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BSQ33_05310 PF01225 Mur ligase family, catalytic domain BSQ33_05310 PF02875 Mur ligase family, glutamate ligase domain BSQ33_05310 PF08245 Mur ligase middle domain BSQ33_05315 PF02875 Mur ligase family, glutamate ligase domain BSQ33_05315 PF01225 Mur ligase family, catalytic domain BSQ33_05315 PF08245 Mur ligase middle domain BSQ33_05320 PF00905 Penicillin binding protein transpeptidase domain BSQ33_05320 PF03717 Penicillin-binding Protein dimerisation domain BSQ33_05325 PF04999 Cell division protein FtsL BSQ33_05330 PF01795 MraW methylase family BSQ33_05340 PF01554 MatE BSQ33_05345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_05345 PF03466 LysR substrate binding domain BSQ33_05350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_05350 PF00672 HAMP domain BSQ33_05355 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BSQ33_05360 PF04348 LppC putative lipoprotein BSQ33_05365 PF02021 Uncharacterised protein family UPF0102 BSQ33_05370 PF13580 SIS domain BSQ33_05375 PF04972 BON domain BSQ33_05380 PF13333 Integrase core domain BSQ33_05380 PF00665 Integrase core domain BSQ33_05380 PF13276 HTH-like domain BSQ33_05390 PF04386 Stringent starvation protein B BSQ33_05395 PF00043 Glutathione S-transferase, C-terminal domain BSQ33_05395 PF02798 Glutathione S-transferase, N-terminal domain BSQ33_05400 PF00380 Ribosomal protein S9/S16 BSQ33_05405 PF00572 Ribosomal protein L13 BSQ33_05410 PF03969 AFG1-like ATPase BSQ33_05415 PF06295 Protein of unknown function (DUF1043) BSQ33_05420 PF00595 PDZ domain BSQ33_05425 PF13180 PDZ domain BSQ33_05430 PF01245 Ribosomal protein L19 BSQ33_05435 PF01746 tRNA (Guanine-1)-methyltransferase BSQ33_05440 PF01782 RimM N-terminal domain BSQ33_05440 PF05239 PRC-barrel domain BSQ33_05445 PF00886 Ribosomal protein S16 BSQ33_05450 PF02978 Signal peptide binding domain BSQ33_05450 PF02881 SRP54-type protein, helical bundle domain BSQ33_05450 PF00448 SRP54-type protein, GTPase domain BSQ33_05455 PF01578 Cytochrome C assembly protein BSQ33_05460 PF03471 Transporter associated domain BSQ33_05460 PF00571 CBS domain BSQ33_05460 PF01595 Cyclin M transmembrane N-terminal domain BSQ33_05470 PF04262 Glutamate-cysteine ligase BSQ33_05475 PF00675 Insulinase (Peptidase family M16) BSQ33_05475 PF05193 Peptidase M16 inactive domain BSQ33_05480 PF09335 SNARE associated Golgi protein BSQ33_05485 PF00107 Zinc-binding dehydrogenase BSQ33_05485 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_05490 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit BSQ33_05495 PF02436 Conserved carboxylase domain BSQ33_05495 PF00364 Biotin-requiring enzyme BSQ33_05495 PF00682 HMGL-like BSQ33_05500 PF04277 Oxaloacetate decarboxylase, gamma chain BSQ33_05535 PF02599 Global regulator protein family BSQ33_05540 PF01842 ACT domain BSQ33_05540 PF00696 Amino acid kinase family BSQ33_05540 PF13840 ACT domain BSQ33_05545 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BSQ33_05545 PF01411 tRNA synthetases class II (A) BSQ33_05545 PF02272 DHHA1 domain BSQ33_05550 PF02631 RecX family BSQ33_05555 PF00154 recA bacterial DNA recombination protein BSQ33_05560 PF02464 Competence-damaged protein BSQ33_05565 PF01614 Bacterial transcriptional regulator BSQ33_05565 PF09339 IclR helix-turn-helix domain BSQ33_05575 PF07883 Cupin domain BSQ33_05585 PF00294 pfkB family carbohydrate kinase BSQ33_05590 PF01081 KDPG and KHG aldolase BSQ33_05595 PF01554 MatE BSQ33_05600 PF06917 Periplasmic pectate lyase BSQ33_05610 PF00005 ABC transporter BSQ33_05610 PF03459 TOBE domain BSQ33_05610 PF17912 MalK OB fold domain BSQ33_05615 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_05620 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_05635 PF13229 Right handed beta helix region BSQ33_05640 PF00474 Sodium:solute symporter family BSQ33_05645 PF14583 Oligogalacturonate lyase BSQ33_05655 PF05188 MutS domain II BSQ33_05655 PF05190 MutS family domain IV BSQ33_05655 PF00488 MutS domain V BSQ33_05655 PF05192 MutS domain III BSQ33_05655 PF01624 MutS domain I BSQ33_05660 PF11849 Domain of unknown function (DUF3369) BSQ33_05665 PF00497 Bacterial extracellular solute-binding proteins, family 3 BSQ33_05665 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_05665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_05670 PF01494 FAD binding domain BSQ33_05675 PF03211 Pectate lyase BSQ33_05680 PF00140 Sigma-70 factor, region 1.2 BSQ33_05680 PF04542 Sigma-70 region 2 BSQ33_05680 PF04539 Sigma-70 region 3 BSQ33_05680 PF04545 Sigma-70, region 4 BSQ33_05685 PF01476 LysM domain BSQ33_05685 PF01551 Peptidase family M23 BSQ33_05695 PF01975 Survival protein SurE BSQ33_05700 PF01142 tRNA pseudouridine synthase D (TruD) BSQ33_05705 PF02542 YgbB family BSQ33_05710 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BSQ33_05715 PF04977 Septum formation initiator BSQ33_05720 PF02673 Bacitracin resistance protein BacA BSQ33_05725 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BSQ33_05730 PF02152 Dihydroneopterin aldolase BSQ33_05735 PF02660 Glycerol-3-phosphate acyltransferase BSQ33_05740 PF00561 alpha/beta hydrolase fold BSQ33_05745 PF00814 Glycoprotease family BSQ33_05755 PF01165 Ribosomal protein S21 BSQ33_05760 PF09424 Yqey-like protein BSQ33_05765 PF08278 DNA primase DnaG DnaB-binding BSQ33_05765 PF01807 CHC2 zinc finger BSQ33_05765 PF08275 DNA primase catalytic core, N-terminal domain BSQ33_05765 PF10410 DnaB-helicase binding domain of primase BSQ33_05770 PF04546 Sigma-70, non-essential region BSQ33_05770 PF00140 Sigma-70 factor, region 1.2 BSQ33_05770 PF04542 Sigma-70 region 2 BSQ33_05770 PF03979 Sigma-70 factor, region 1.1 BSQ33_05770 PF04545 Sigma-70, region 4 BSQ33_05770 PF04539 Sigma-70 region 3 BSQ33_05830 PF00884 Sulfatase BSQ33_05835 PF00107 Zinc-binding dehydrogenase BSQ33_05835 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_05890 PF00975 Thioesterase domain BSQ33_05890 PF00668 Condensation domain BSQ33_05890 PF13193 AMP-binding enzyme C-terminal domain BSQ33_05890 PF00501 AMP-binding enzyme BSQ33_05890 PF00550 Phosphopantetheine attachment site BSQ33_05895 PF16197 Ketoacyl-synthetase C-terminal extension BSQ33_05895 PF00550 Phosphopantetheine attachment site BSQ33_05895 PF02801 Beta-ketoacyl synthase, C-terminal domain BSQ33_05895 PF00698 Acyl transferase domain BSQ33_05895 PF00109 Beta-ketoacyl synthase, N-terminal domain BSQ33_05895 PF00668 Condensation domain BSQ33_06015 PF02954 Bacterial regulatory protein, Fis family BSQ33_06015 PF00158 Sigma-54 interaction domain BSQ33_06015 PF00072 Response regulator receiver domain BSQ33_06020 PF02378 Phosphotransferase system, EIIC BSQ33_06020 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BSQ33_06020 PF00367 phosphotransferase system, EIIB BSQ33_06025 PF00672 HAMP domain BSQ33_06025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_06035 PF16347 Domain of unknown function (DUF4976) BSQ33_06035 PF00884 Sulfatase BSQ33_06045 PF04055 Radical SAM superfamily BSQ33_06045 PF13186 Iron-sulfur cluster-binding domain BSQ33_06050 PF00884 Sulfatase BSQ33_06060 PF00884 Sulfatase BSQ33_06060 PF16385 Domain of unknown function BSQ33_06065 PF13186 Iron-sulfur cluster-binding domain BSQ33_06065 PF04055 Radical SAM superfamily BSQ33_06075 PF02656 Domain of unknown function (DUF202) BSQ33_06080 PF01380 SIS domain BSQ33_06080 PF01418 Helix-turn-helix domain, rpiR family BSQ33_06095 PF00367 phosphotransferase system, EIIB BSQ33_06095 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BSQ33_06095 PF02378 Phosphotransferase system, EIIC BSQ33_06100 PF00672 HAMP domain BSQ33_06100 PF02203 Tar ligand binding domain homologue BSQ33_06100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_06110 PF00313 'Cold-shock' DNA-binding domain BSQ33_06115 PF01380 SIS domain BSQ33_06120 PF00455 DeoR C terminal sensor domain BSQ33_06120 PF08220 DeoR-like helix-turn-helix domain BSQ33_06125 PF00224 Pyruvate kinase, barrel domain BSQ33_06125 PF02887 Pyruvate kinase, alpha/beta domain BSQ33_06130 PF04402 Protein of unknown function (DUF541) BSQ33_06135 PF00924 Mechanosensitive ion channel BSQ33_06135 PF05552 Conserved TM helix BSQ33_06140 PF01116 Fructose-bisphosphate aldolase class-II BSQ33_06145 PF00162 Phosphoglycerate kinase BSQ33_06150 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BSQ33_06150 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BSQ33_06155 PF02780 Transketolase, C-terminal domain BSQ33_06155 PF00456 Transketolase, thiamine diphosphate binding domain BSQ33_06155 PF02779 Transketolase, pyrimidine binding domain BSQ33_06160 PF02773 S-adenosylmethionine synthetase, C-terminal domain BSQ33_06160 PF02772 S-adenosylmethionine synthetase, central domain BSQ33_06160 PF00438 S-adenosylmethionine synthetase, N-terminal domain BSQ33_06165 PF10263 SprT-like family BSQ33_06165 PF17283 SprT-like zinc ribbon domain BSQ33_06170 PF04452 RNA methyltransferase BSQ33_06175 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BSQ33_06175 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BSQ33_06180 PF02622 Uncharacterized ACR, COG1678 BSQ33_06185 PF03652 Holliday junction resolvase BSQ33_06190 PF00437 Type II/IV secretion system protein BSQ33_06195 PF01168 Alanine racemase, N-terminal domain BSQ33_06200 PF14748 Pyrroline-5-carboxylate reductase dimerisation BSQ33_06200 PF03807 NADP oxidoreductase coenzyme F420-dependent BSQ33_06205 PF02325 YGGT family BSQ33_06210 PF02594 Uncharacterised ACR, YggU family COG1872 BSQ33_06215 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BSQ33_06220 PF00072 Response regulator receiver domain BSQ33_06225 PF00672 HAMP domain BSQ33_06225 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_06225 PF01627 Hpt domain BSQ33_06225 PF00072 Response regulator receiver domain BSQ33_06225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_06225 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BSQ33_06245 PF01740 STAS domain BSQ33_06245 PF08678 Rsbr N terminal BSQ33_06255 PF08212 Lipocalin-like domain BSQ33_06350 PF16671 Actin cross-linking domain BSQ33_06350 PF04717 Type VI secretion system, phage-baseplate injector BSQ33_06355 PF01725 Ham1 family BSQ33_06360 PF04055 Radical SAM superfamily BSQ33_06360 PF06969 HemN C-terminal domain BSQ33_06370 PF02390 Putative methyltransferase BSQ33_06375 PF10576 Iron-sulfur binding domain of endonuclease III BSQ33_06375 PF14815 NUDIX domain BSQ33_06375 PF00730 HhH-GPD superfamily base excision DNA repair protein BSQ33_06375 PF00633 Helix-hairpin-helix motif BSQ33_06380 PF04362 Bacterial Fe(2+) trafficking BSQ33_06385 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BSQ33_06385 PF01464 Transglycosylase SLT domain BSQ33_06415 PF13333 Integrase core domain BSQ33_06415 PF00665 Integrase core domain BSQ33_06415 PF13276 HTH-like domain BSQ33_06450 PF00226 DnaJ domain BSQ33_06450 PF05099 Tellurite resistance protein TerB BSQ33_06455 PF03968 OstA-like protein BSQ33_06455 PF04453 LPS transport system D BSQ33_06460 PF09312 SurA N-terminal domain BSQ33_06465 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BSQ33_06470 PF00398 Ribosomal RNA adenine dimethylase BSQ33_06475 PF04379 ApaG domain BSQ33_06480 PF00149 Calcineurin-like phosphoesterase BSQ33_06485 PF00186 Dihydrofolate reductase BSQ33_06490 PF06738 Putative threonine/serine exporter BSQ33_06490 PF12821 Threonine/Serine exporter, ThrE BSQ33_06495 PF06738 Putative threonine/serine exporter BSQ33_06500 PF01926 50S ribosome-binding GTPase BSQ33_06500 PF01018 GTP1/OBG BSQ33_06505 PF01016 Ribosomal L27 protein BSQ33_06515 PF00348 Polyprenyl synthetase BSQ33_06520 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BSQ33_06520 PF00056 lactate/malate dehydrogenase, NAD binding domain BSQ33_06525 PF01316 Arginine repressor, DNA binding domain BSQ33_06525 PF02863 Arginine repressor, C-terminal domain BSQ33_06530 PF16868 NMT1-like family BSQ33_06540 PF00582 Universal stress protein family BSQ33_06550 PF03786 D-mannonate dehydratase (UxuA) BSQ33_06555 PF00392 Bacterial regulatory proteins, gntR family BSQ33_06555 PF07729 FCD domain BSQ33_06560 PF03480 Bacterial extracellular solute-binding protein, family 7 BSQ33_06565 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BSQ33_06570 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BSQ33_06575 PF01055 Glycosyl hydrolases family 31 BSQ33_06575 PF17137 Domain of unknown function (DUF5110) BSQ33_06575 PF13802 Galactose mutarotase-like BSQ33_06575 PF16338 Domain of unknown function (DUF4968) BSQ33_06580 PF01232 Mannitol dehydrogenase Rossmann domain BSQ33_06580 PF08125 Mannitol dehydrogenase C-terminal domain BSQ33_06585 PF02614 Glucuronate isomerase BSQ33_06590 PF00294 pfkB family carbohydrate kinase BSQ33_06595 PF01081 KDPG and KHG aldolase BSQ33_06610 PF00206 Lyase BSQ33_06610 PF02655 ATP-grasp domain BSQ33_06620 PF03466 LysR substrate binding domain BSQ33_06620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_06635 PF06877 Regulator of ribonuclease activity B BSQ33_06640 PF01523 Putative modulator of DNA gyrase BSQ33_06645 PF00795 Carbon-nitrogen hydrolase BSQ33_06650 PF13502 AsmA-like C-terminal region BSQ33_06650 PF13116 Protein of unknown function BSQ33_06655 PF00575 S1 RNA binding domain BSQ33_06655 PF10150 Ribonuclease E/G family BSQ33_06660 PF02545 Maf-like protein BSQ33_06665 PF04093 rod shape-determining protein MreD BSQ33_06670 PF04085 rod shape-determining protein MreC BSQ33_06680 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_06680 PF00563 EAL domain BSQ33_06680 PF17157 Gammaproteobacterial periplasmic sensor domain BSQ33_06685 PF02492 CobW/HypB/UreG, nucleotide-binding domain BSQ33_06690 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA BSQ33_06695 PF00586 AIR synthase related protein, N-terminal domain BSQ33_06695 PF02769 AIR synthase related protein, C-terminal domain BSQ33_06700 PF01924 Hydrogenase formation hypA family BSQ33_06705 PF01455 HupF/HypC family BSQ33_06710 PF01300 Telomere recombination BSQ33_06710 PF07503 HypF finger BSQ33_06710 PF17788 HypF Kae1-like domain BSQ33_06710 PF00708 Acylphosphatase BSQ33_06720 PF02634 FdhD/NarQ family BSQ33_06725 PF02954 Bacterial regulatory protein, Fis family BSQ33_06725 PF00158 Sigma-54 interaction domain BSQ33_06725 PF01590 GAF domain BSQ33_06730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BSQ33_06730 PF00384 Molybdopterin oxidoreductase BSQ33_06730 PF01568 Molydopterin dinucleotide binding domain BSQ33_06735 PF13247 4Fe-4S dicluster domain BSQ33_06735 PF12800 4Fe-4S binding domain BSQ33_06740 PF01750 Hydrogenase maturation protease BSQ33_06745 PF07450 Formate hydrogenlyase maturation protein HycH BSQ33_06750 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BSQ33_06760 PF00374 Nickel-dependent hydrogenase BSQ33_06760 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BSQ33_06760 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BSQ33_06765 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BSQ33_06765 PF00361 Proton-conducting membrane transporter BSQ33_06770 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BSQ33_06775 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BSQ33_06775 PF00361 Proton-conducting membrane transporter BSQ33_06780 PF00146 NADH dehydrogenase BSQ33_06785 PF00361 Proton-conducting membrane transporter BSQ33_06790 PF12798 4Fe-4S binding domain BSQ33_06790 PF00037 4Fe-4S binding domain BSQ33_06795 PF00696 Amino acid kinase family BSQ33_06795 PF01842 ACT domain BSQ33_06800 PF00266 Aminotransferase class-V BSQ33_06810 PF00005 ABC transporter BSQ33_06810 PF17760 UvrA interaction domain BSQ33_06810 PF17755 UvrA DNA-binding domain BSQ33_06815 PF00483 Nucleotidyl transferase BSQ33_06820 PF00196 Bacterial regulatory proteins, luxR family BSQ33_06825 PF00436 Single-strand binding protein family BSQ33_06830 PF00809 Pterin binding enzyme BSQ33_06830 PF02574 Homocysteine S-methyltransferase BSQ33_06830 PF02310 B12 binding domain BSQ33_06830 PF02607 B12 binding domain BSQ33_06830 PF02965 Vitamin B12 dependent methionine synthase, activation domain BSQ33_06835 PF00999 Sodium/hydrogen exchanger family BSQ33_06910 PF01507 Phosphoadenosine phosphosulfate reductase family BSQ33_06915 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BSQ33_06915 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BSQ33_06920 PF00175 Oxidoreductase NAD-binding domain BSQ33_06920 PF00258 Flavodoxin BSQ33_06920 PF00667 FAD binding domain BSQ33_06935 PF01207 Dihydrouridine synthase (Dus) BSQ33_06955 PF02384 N-6 DNA Methylase BSQ33_06970 PF00005 ABC transporter BSQ33_06970 PF00664 ABC transporter transmembrane region BSQ33_06975 PF00668 Condensation domain BSQ33_06975 PF13193 AMP-binding enzyme C-terminal domain BSQ33_06975 PF07993 Male sterility protein BSQ33_06975 PF00550 Phosphopantetheine attachment site BSQ33_06975 PF00501 AMP-binding enzyme BSQ33_06980 PF13193 AMP-binding enzyme C-terminal domain BSQ33_06980 PF00550 Phosphopantetheine attachment site BSQ33_06980 PF00501 AMP-binding enzyme BSQ33_06980 PF00975 Thioesterase domain BSQ33_06980 PF00668 Condensation domain BSQ33_06985 PF00550 Phosphopantetheine attachment site BSQ33_06985 PF00975 Thioesterase domain BSQ33_06985 PF00668 Condensation domain BSQ33_06985 PF13193 AMP-binding enzyme C-terminal domain BSQ33_06985 PF00501 AMP-binding enzyme BSQ33_06990 PF01475 Ferric uptake regulator family BSQ33_07000 PF00342 Phosphoglucose isomerase BSQ33_07005 PF01894 Uncharacterised protein family UPF0047 BSQ33_07010 PF03796 DnaB-like helicase C terminal domain BSQ33_07010 PF00772 DnaB-like helicase N terminal domain BSQ33_07020 PF01281 Ribosomal protein L9, N-terminal domain BSQ33_07020 PF03948 Ribosomal protein L9, C-terminal domain BSQ33_07025 PF01084 Ribosomal protein S18 BSQ33_07030 PF00436 Single-strand binding protein family BSQ33_07035 PF01250 Ribosomal protein S6 BSQ33_07040 PF00210 Ferritin-like domain BSQ33_07045 PF04324 BFD-like [2Fe-2S] binding domain BSQ33_07050 PF03143 Elongation factor Tu C-terminal domain BSQ33_07050 PF00009 Elongation factor Tu GTP binding domain BSQ33_07050 PF03144 Elongation factor Tu domain 2 BSQ33_07055 PF00679 Elongation factor G C-terminus BSQ33_07055 PF00009 Elongation factor Tu GTP binding domain BSQ33_07055 PF03764 Elongation factor G, domain IV BSQ33_07055 PF03144 Elongation factor Tu domain 2 BSQ33_07055 PF14492 Elongation Factor G, domain II BSQ33_07060 PF00177 Ribosomal protein S7p/S5e BSQ33_07065 PF00164 Ribosomal protein S12/S23 BSQ33_07075 PF02635 DsrE/DsrF-like family BSQ33_07080 PF02635 DsrE/DsrF-like family BSQ33_07085 PF08348 YheO-like PAS domain BSQ33_07085 PF13309 HTH domain BSQ33_07090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BSQ33_07090 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BSQ33_07105 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) BSQ33_07110 PF01145 SPFH domain / Band 7 family BSQ33_07115 PF12221 Bacterial membrane protein N terminal BSQ33_07115 PF01145 SPFH domain / Band 7 family BSQ33_07120 PF16360 GTP-binding GTPase Middle Region BSQ33_07120 PF01926 50S ribosome-binding GTPase BSQ33_07120 PF13167 GTP-binding GTPase N-terminal BSQ33_07125 PF17209 Hfq protein BSQ33_07135 PF01119 DNA mismatch repair protein, C-terminal domain BSQ33_07135 PF08676 MutL C terminal dimerisation domain BSQ33_07140 PF01520 N-acetylmuramoyl-L-alanine amidase BSQ33_07145 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BSQ33_07150 PF08331 Domain of unknown function (DUF1730) BSQ33_07180 PF00929 Exonuclease BSQ33_07185 PF03193 RsgA GTPase BSQ33_07190 PF02666 Phosphatidylserine decarboxylase BSQ33_07195 PF00089 Trypsin BSQ33_07205 PF00939 Sodium:sulfate symporter transmembrane region BSQ33_07215 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BSQ33_07215 PF01676 Metalloenzyme superfamily BSQ33_07220 PF01551 Peptidase family M23 BSQ33_07225 PF08360 QacR-like protein, C-terminal region BSQ33_07225 PF00440 Bacterial regulatory proteins, tetR family BSQ33_07230 PF01208 Uroporphyrinogen decarboxylase (URO-D) BSQ33_07235 PF00293 NUDIX domain BSQ33_07235 PF09297 NADH pyrophosphatase zinc ribbon domain BSQ33_07240 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ BSQ33_07245 PF04998 RNA polymerase Rpb1, domain 5 BSQ33_07245 PF00623 RNA polymerase Rpb1, domain 2 BSQ33_07245 PF04983 RNA polymerase Rpb1, domain 3 BSQ33_07245 PF04997 RNA polymerase Rpb1, domain 1 BSQ33_07245 PF05000 RNA polymerase Rpb1, domain 4 BSQ33_07250 PF04561 RNA polymerase Rpb2, domain 2 BSQ33_07250 PF10385 RNA polymerase beta subunit external 1 domain BSQ33_07250 PF04565 RNA polymerase Rpb2, domain 3 BSQ33_07250 PF00562 RNA polymerase Rpb2, domain 6 BSQ33_07250 PF04560 RNA polymerase Rpb2, domain 7 BSQ33_07250 PF04563 RNA polymerase beta subunit BSQ33_07255 PF16320 Ribosomal protein L7/L12 dimerisation domain BSQ33_07255 PF00542 Ribosomal protein L7/L12 C-terminal domain BSQ33_07260 PF00466 Ribosomal protein L10 BSQ33_07270 PF00687 Ribosomal protein L1p/L10e family BSQ33_07275 PF00298 Ribosomal protein L11, RNA binding domain BSQ33_07275 PF03946 Ribosomal protein L11, N-terminal domain BSQ33_07280 PF00467 KOW motif BSQ33_07280 PF02357 Transcription termination factor nusG BSQ33_07285 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BSQ33_07290 PF03143 Elongation factor Tu C-terminal domain BSQ33_07290 PF03144 Elongation factor Tu domain 2 BSQ33_07290 PF00009 Elongation factor Tu GTP binding domain BSQ33_07315 PF00485 Phosphoribulokinase / Uridine kinase family BSQ33_07320 PF08279 HTH domain BSQ33_07320 PF03099 Biotin/lipoate A/B protein ligase family BSQ33_07320 PF02237 Biotin protein ligase C terminal domain BSQ33_07325 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BSQ33_07325 PF01565 FAD binding domain BSQ33_07335 PF13091 PLD-like domain BSQ33_07340 PF00175 Oxidoreductase NAD-binding domain BSQ33_07345 PF00175 Oxidoreductase NAD-binding domain BSQ33_07345 PF00970 Oxidoreductase FAD-binding domain BSQ33_07345 PF00111 2Fe-2S iron-sulfur cluster binding domain BSQ33_07350 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BSQ33_07360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BSQ33_07360 PF07498 Rho termination factor, N-terminal domain BSQ33_07360 PF07497 Rho termination factor, RNA-binding domain BSQ33_07365 PF00085 Thioredoxin BSQ33_07370 PF00270 DEAD/DEAH box helicase BSQ33_07370 PF00271 Helicase conserved C-terminal domain BSQ33_07375 PF02541 Ppx/GppA phosphatase family BSQ33_07380 PF01627 Hpt domain BSQ33_07380 PF00072 Response regulator receiver domain BSQ33_07380 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_07380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_07380 PF00672 HAMP domain BSQ33_07385 PF12832 MFS_1 like family BSQ33_07405 PF13193 AMP-binding enzyme C-terminal domain BSQ33_07405 PF00501 AMP-binding enzyme BSQ33_07405 PF16177 Acetyl-coenzyme A synthetase N-terminus BSQ33_07410 PF01220 Dehydroquinase class II BSQ33_07415 PF00364 Biotin-requiring enzyme BSQ33_07420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BSQ33_07420 PF00289 Biotin carboxylase, N-terminal domain BSQ33_07420 PF02785 Biotin carboxylase C-terminal domain BSQ33_07430 PF01207 Dihydrouridine synthase (Dus) BSQ33_07455 PF07859 alpha/beta hydrolase fold BSQ33_07470 PF03466 LysR substrate binding domain BSQ33_07470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_07480 PF01638 HxlR-like helix-turn-helix BSQ33_07485 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BSQ33_07490 PF00361 Proton-conducting membrane transporter BSQ33_07490 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BSQ33_07490 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BSQ33_07495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_07495 PF03466 LysR substrate binding domain BSQ33_07525 PF01238 Phosphomannose isomerase type I BSQ33_07530 PF02142 MGS-like domain BSQ33_07530 PF01808 AICARFT/IMPCHase bienzyme BSQ33_07535 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BSQ33_07535 PF02843 Phosphoribosylglycinamide synthetase, C domain BSQ33_07535 PF02844 Phosphoribosylglycinamide synthetase, N domain BSQ33_07540 PF00672 HAMP domain BSQ33_07540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_07540 PF17200 Single Cache domain 2 BSQ33_07545 PF01272 Transcription elongation factor, GreA/GreB, C-term BSQ33_07545 PF03449 Transcription elongation factor, N-terminal BSQ33_07550 PF16921 Tex protein YqgF-like domain BSQ33_07550 PF09371 Tex-like protein N-terminal domain BSQ33_07550 PF00575 S1 RNA binding domain BSQ33_07550 PF17674 HHH domain BSQ33_07560 PF00561 alpha/beta hydrolase fold BSQ33_07565 PF00156 Phosphoribosyl transferase domain BSQ33_07570 PF01521 Iron-sulphur cluster biosynthesis BSQ33_07570 PF01106 NifU-like domain BSQ33_07575 PF00293 NUDIX domain BSQ33_07580 PF00459 Inositol monophosphatase family BSQ33_07585 PF01203 Type II secretion system (T2SS), protein N BSQ33_07590 PF04612 Type II secretion system (T2SS), protein M BSQ33_07595 PF05134 Type II secretion system (T2SS), protein L BSQ33_07595 PF12693 GspL periplasmic domain BSQ33_07600 PF03934 Type II secretion system (T2SS), protein K BSQ33_07605 PF07963 Prokaryotic N-terminal methylation motif BSQ33_07605 PF11612 Type II secretion system (T2SS), protein J BSQ33_07610 PF07963 Prokaryotic N-terminal methylation motif BSQ33_07610 PF02501 Type II secretion system (T2SS), protein I BSQ33_07615 PF12019 Type II transport protein GspH BSQ33_07620 PF07963 Prokaryotic N-terminal methylation motif BSQ33_07620 PF08334 Type II secretion system (T2SS), protein G BSQ33_07625 PF00482 Type II secretion system (T2SS), protein F BSQ33_07630 PF00437 Type II/IV secretion system protein BSQ33_07635 PF03958 Bacterial type II/III secretion system short domain BSQ33_07635 PF00263 Bacterial type II and III secretion system protein BSQ33_07640 PF11356 Type II secretion system protein C BSQ33_07645 PF01479 S4 domain BSQ33_07650 PF01430 Hsp33 protein BSQ33_07655 PF01293 Phosphoenolpyruvate carboxykinase BSQ33_07665 PF00583 Acetyltransferase (GNAT) family BSQ33_07665 PF09500 Putative thioesterase (yiiD_Cterm) BSQ33_07670 PF02580 D-Tyr-tRNA(Tyr) deacylase BSQ33_07675 PF03631 Virulence factor BrkB BSQ33_07685 PF03951 Glutamine synthetase, beta-Grasp domain BSQ33_07685 PF00120 Glutamine synthetase, catalytic domain BSQ33_07690 PF00989 PAS fold BSQ33_07690 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_07690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_07695 PF00072 Response regulator receiver domain BSQ33_07695 PF02954 Bacterial regulatory protein, Fis family BSQ33_07695 PF00158 Sigma-54 interaction domain BSQ33_07760 PF01177 Asp/Glu/Hydantoin racemase BSQ33_07765 PF07715 TonB-dependent Receptor Plug Domain BSQ33_07765 PF00593 TonB dependent receptor BSQ33_07770 PF05958 tRNA (Uracil-5-)-methyltransferase BSQ33_07775 PF07683 Cobalamin synthesis protein cobW C-terminal domain BSQ33_07775 PF02492 CobW/HypB/UreG, nucleotide-binding domain BSQ33_07790 PF07683 Cobalamin synthesis protein cobW C-terminal domain BSQ33_07790 PF02492 CobW/HypB/UreG, nucleotide-binding domain BSQ33_07795 PF00950 ABC 3 transport family BSQ33_07800 PF00005 ABC transporter BSQ33_07805 PF01297 Zinc-uptake complex component A periplasmic BSQ33_07810 PF00664 ABC transporter transmembrane region BSQ33_07810 PF00005 ABC transporter BSQ33_07810 PF08021 Siderophore-interacting FAD-binding domain BSQ33_07810 PF04954 Siderophore-interacting protein BSQ33_07815 PF00664 ABC transporter transmembrane region BSQ33_07815 PF00005 ABC transporter BSQ33_07820 PF00440 Bacterial regulatory proteins, tetR family BSQ33_07825 PF05638 Type VI secretion system effector, Hcp BSQ33_07835 PF04717 Type VI secretion system, phage-baseplate injector BSQ33_07835 PF16671 Actin cross-linking domain BSQ33_07885 PF16671 Actin cross-linking domain BSQ33_07885 PF04717 Type VI secretion system, phage-baseplate injector BSQ33_07935 PF04717 Type VI secretion system, phage-baseplate injector BSQ33_07935 PF16671 Actin cross-linking domain BSQ33_08050 PF00440 Bacterial regulatory proteins, tetR family BSQ33_08055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BSQ33_08055 PF07992 Pyridine nucleotide-disulphide oxidoreductase BSQ33_08060 PF04072 Leucine carboxyl methyltransferase BSQ33_08065 PF00717 Peptidase S24-like BSQ33_08065 PF01726 LexA DNA binding domain BSQ33_08070 PF01219 Prokaryotic diacylglycerol kinase BSQ33_08075 PF01553 Acyltransferase BSQ33_08080 PF01040 UbiA prenyltransferase family BSQ33_08085 PF04345 Chorismate lyase BSQ33_08095 PF01694 Rhomboid family BSQ33_08095 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease BSQ33_08100 PF00581 Rhodanese-like domain BSQ33_08105 PF04542 Sigma-70 region 2 BSQ33_08105 PF00140 Sigma-70 factor, region 1.2 BSQ33_08105 PF04545 Sigma-70, region 4 BSQ33_08110 PF18075 FtsX extracellular domain BSQ33_08115 PF00005 ABC transporter BSQ33_08120 PF02881 SRP54-type protein, helical bundle domain BSQ33_08120 PF00448 SRP54-type protein, GTPase domain BSQ33_08130 PF01914 MarC family integral membrane protein BSQ33_08150 PF00210 Ferritin-like domain BSQ33_08155 PF00563 EAL domain BSQ33_08155 PF08668 HDOD domain BSQ33_08160 PF01810 LysE type translocator BSQ33_08165 PF12146 Serine aminopeptidase, S33 BSQ33_08175 PF00501 AMP-binding enzyme BSQ33_08175 PF13193 AMP-binding enzyme C-terminal domain BSQ33_08175 PF00668 Condensation domain BSQ33_08175 PF00550 Phosphopantetheine attachment site BSQ33_08185 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BSQ33_08185 PF01648 4'-phosphopantetheinyl transferase superfamily BSQ33_08210 PF13419 Haloacid dehalogenase-like hydrolase BSQ33_08215 PF00589 Phage integrase family BSQ33_08215 PF02899 Phage integrase, N-terminal SAM-like domain BSQ33_08230 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BSQ33_08230 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BSQ33_08240 PF01491 Frataxin-like domain BSQ33_08245 PF12633 Adenylate cyclase NT domain BSQ33_08245 PF01295 Adenylate cyclase, class-I BSQ33_08250 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BSQ33_08250 PF03900 Porphobilinogen deaminase, C-terminal domain BSQ33_08255 PF02602 Uroporphyrinogen-III synthase HemD BSQ33_08260 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase BSQ33_08265 PF07719 Tetratricopeptide repeat BSQ33_08265 PF07219 HemY protein N-terminus BSQ33_08270 PF04055 Radical SAM superfamily BSQ33_08270 PF06969 HemN C-terminal domain BSQ33_08275 PF10675 Protein of unknown function (DUF2489) BSQ33_08280 PF04220 Der GTPase activator (YihI) BSQ33_08295 PF01926 50S ribosome-binding GTPase BSQ33_08300 PF01367 5'-3' exonuclease, C-terminal SAM fold BSQ33_08300 PF00476 DNA polymerase family A BSQ33_08300 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BSQ33_08300 PF01612 3'-5' exonuclease BSQ33_08305 PF00490 Delta-aminolevulinic acid dehydratase BSQ33_08310 PF01026 TatD related DNase BSQ33_08315 PF00902 Sec-independent protein translocase protein (TatC) BSQ33_08320 PF02416 mttA/Hcf106 family BSQ33_08325 PF02416 mttA/Hcf106 family BSQ33_08330 PF03109 ABC1 family BSQ33_08335 PF02036 SCP-2 sterol transfer family BSQ33_08340 PF01209 ubiE/COQ5 methyltransferase family BSQ33_08360 PF12833 Helix-turn-helix domain BSQ33_08360 PF02311 AraC-like ligand binding domain BSQ33_08370 PF11762 L-arabinose isomerase C-terminal domain BSQ33_08370 PF02610 L-arabinose isomerase BSQ33_08375 PF00596 Class II Aldolase and Adducin N-terminal domain BSQ33_08380 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BSQ33_08380 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BSQ33_08385 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BSQ33_08390 PF00005 ABC transporter BSQ33_08395 PF02653 Branched-chain amino acid transport system / permease component BSQ33_08410 PF03992 Antibiotic biosynthesis monooxygenase BSQ33_08415 PF00132 Bacterial transferase hexapeptide (six repeats) BSQ33_08425 PF03466 LysR substrate binding domain BSQ33_08425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_08440 PF13193 AMP-binding enzyme C-terminal domain BSQ33_08440 PF00501 AMP-binding enzyme BSQ33_08440 PF00550 Phosphopantetheine attachment site BSQ33_08440 PF00668 Condensation domain BSQ33_08440 PF00975 Thioesterase domain BSQ33_08445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BSQ33_08445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BSQ33_08450 PF14489 QueF-like protein BSQ33_08450 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BSQ33_08475 PF13460 NAD(P)H-binding BSQ33_08495 PF09827 CRISPR associated protein Cas2 BSQ33_08500 PF01930 Domain of unknown function DUF83 BSQ33_08500 PF01867 CRISPR associated protein Cas1 BSQ33_08540 PF03787 RAMP superfamily BSQ33_08560 PF10625 Universal stress protein B (UspB) BSQ33_08565 PF00210 Ferritin-like domain BSQ33_08570 PF00582 Universal stress protein family BSQ33_08575 PF00892 EamA-like transporter family BSQ33_08585 PF04445 Putative SAM-dependent methyltransferase BSQ33_08590 PF01037 Lrp/AsnC ligand binding domain BSQ33_08600 PF01321 Creatinase/Prolidase N-terminal domain BSQ33_08600 PF00557 Metallopeptidase family M24 BSQ33_08605 PF13977 BetI-type transcriptional repressor, C-terminal BSQ33_08605 PF00440 Bacterial regulatory proteins, tetR family BSQ33_08615 PF05199 GMC oxidoreductase BSQ33_08615 PF00732 GMC oxidoreductase BSQ33_08620 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BSQ33_08625 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_08630 PF00005 ABC transporter BSQ33_08630 PF00571 CBS domain BSQ33_08635 PF04055 Radical SAM superfamily BSQ33_08635 PF06968 Biotin and Thiamin Synthesis associated domain BSQ33_08640 PF05690 Thiazole biosynthesis protein ThiG BSQ33_08645 PF02597 ThiS family BSQ33_08650 PF00899 ThiF family BSQ33_08655 PF02581 Thiamine monophosphate synthase BSQ33_08660 PF01964 Radical SAM ThiC family BSQ33_08660 PF13667 ThiC-associated domain BSQ33_08665 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BSQ33_08670 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain BSQ33_08670 PF04616 Glycosyl hydrolases family 43 BSQ33_08715 PF12724 Flavodoxin domain BSQ33_08720 PF02386 Cation transport protein BSQ33_08725 PF09186 Domain of unknown function (DUF1949) BSQ33_08725 PF01205 Uncharacterized protein family UPF0029 BSQ33_08730 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BSQ33_08730 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BSQ33_08730 PF00378 Enoyl-CoA hydratase/isomerase BSQ33_08735 PF00108 Thiolase, N-terminal domain BSQ33_08735 PF02803 Thiolase, C-terminal domain BSQ33_08740 PF12804 MobA-like NTP transferase domain BSQ33_08740 PF00132 Bacterial transferase hexapeptide (six repeats) BSQ33_08745 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BSQ33_08745 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BSQ33_08750 PF02874 ATP synthase alpha/beta family, beta-barrel domain BSQ33_08750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BSQ33_08755 PF00231 ATP synthase BSQ33_08760 PF02874 ATP synthase alpha/beta family, beta-barrel domain BSQ33_08760 PF00306 ATP synthase alpha/beta chain, C terminal domain BSQ33_08760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BSQ33_08765 PF00213 ATP synthase delta (OSCP) subunit BSQ33_08770 PF00430 ATP synthase B/B' CF(0) BSQ33_08775 PF00137 ATP synthase subunit C BSQ33_08780 PF00119 ATP synthase A chain BSQ33_08790 PF17762 HTH domain found in ParB protein BSQ33_08790 PF02195 ParB-like nuclease domain BSQ33_08795 PF13614 AAA domain BSQ33_08800 PF02527 rRNA small subunit methyltransferase G BSQ33_08805 PF01134 Glucose inhibited division protein A BSQ33_08805 PF13932 GidA associated domain BSQ33_08815 PF00258 Flavodoxin BSQ33_08825 PF05638 Type VI secretion system effector, Hcp BSQ33_08840 PF10396 GTP-binding protein TrmE N-terminus BSQ33_08840 PF01926 50S ribosome-binding GTPase BSQ33_08840 PF12631 MnmE helical domain BSQ33_08845 PF14849 YidC periplasmic domain BSQ33_08845 PF02096 60Kd inner membrane protein BSQ33_08850 PF01809 Putative membrane protein insertion efficiency factor BSQ33_08855 PF00825 Ribonuclease P BSQ33_08860 PF00468 Ribosomal protein L34 BSQ33_08865 PF00005 ABC transporter BSQ33_08870 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_08875 PF00497 Bacterial extracellular solute-binding proteins, family 3 BSQ33_08880 PF11638 DnaA N-terminal domain BSQ33_08880 PF08299 Bacterial dnaA protein helix-turn-helix BSQ33_08880 PF00308 Bacterial dnaA protein BSQ33_08885 PF02768 DNA polymerase III beta subunit, C-terminal domain BSQ33_08885 PF02767 DNA polymerase III beta subunit, central domain BSQ33_08885 PF00712 DNA polymerase III beta subunit, N-terminal domain BSQ33_08890 PF02463 RecF/RecN/SMC N terminal domain BSQ33_08895 PF18053 DNA gyrase B subunit insert domain BSQ33_08895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_08895 PF01751 Toprim domain BSQ33_08895 PF00204 DNA gyrase B BSQ33_08895 PF00986 DNA gyrase B subunit, carboxyl terminus BSQ33_08915 PF01810 LysE type translocator BSQ33_08925 PF13358 DDE superfamily endonuclease BSQ33_08925 PF13592 Winged helix-turn helix BSQ33_08950 PF00011 Hsp20/alpha crystallin family BSQ33_08955 PF00174 Oxidoreductase molybdopterin binding domain BSQ33_08960 PF01794 Ferric reductase like transmembrane component BSQ33_08970 PF00155 Aminotransferase class I and II BSQ33_08975 PF01425 Amidase BSQ33_08980 PF00289 Biotin carboxylase, N-terminal domain BSQ33_08980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BSQ33_08980 PF02785 Biotin carboxylase C-terminal domain BSQ33_08995 PF00005 ABC transporter BSQ33_09000 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_09010 PF05746 DALR anticodon binding domain BSQ33_09010 PF02092 Glycyl-tRNA synthetase beta subunit BSQ33_09015 PF02091 Glycyl-tRNA synthetase alpha subunit BSQ33_09020 PF01169 Uncharacterized protein family UPF0016 BSQ33_09030 PF05638 Type VI secretion system effector, Hcp BSQ33_09045 PF01206 Sulfurtransferase TusA BSQ33_09055 PF00585 C-terminal regulatory domain of Threonine dehydratase BSQ33_09055 PF00291 Pyridoxal-phosphate dependent enzyme BSQ33_09060 PF00920 Dehydratase family BSQ33_09065 PF01063 Amino-transferase class IV BSQ33_09075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BSQ33_09075 PF00205 Thiamine pyrophosphate enzyme, central domain BSQ33_09075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BSQ33_09080 PF01078 Magnesium chelatase, subunit ChlI BSQ33_09080 PF13335 Magnesium chelatase, subunit ChlI C-terminal BSQ33_09085 PF01553 Acyltransferase BSQ33_09090 PF01323 DSBA-like thioredoxin domain BSQ33_09095 PF01636 Phosphotransferase enzyme family BSQ33_09100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_09100 PF00672 HAMP domain BSQ33_09100 PF02743 Cache domain BSQ33_09105 PF06288 Protein of unknown function (DUF1040) BSQ33_09110 PF07070 SpoOM protein BSQ33_09115 PF03006 Haemolysin-III related BSQ33_09120 PF02386 Cation transport protein BSQ33_09125 PF02080 TrkA-C domain BSQ33_09125 PF02254 TrkA-N domain BSQ33_09130 PF01189 16S rRNA methyltransferase RsmB/F BSQ33_09130 PF01029 NusB family BSQ33_09140 PF01327 Polypeptide deformylase BSQ33_09145 PF17782 DprA winged helix domain BSQ33_09145 PF02481 DNA recombination-mediator protein A BSQ33_09150 PF04361 Protein of unknown function (DUF494) BSQ33_09155 PF01396 Topoisomerase DNA binding C4 zinc finger BSQ33_09160 PF02222 ATP-grasp domain BSQ33_09160 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BSQ33_09165 PF00731 AIR carboxylase BSQ33_09170 PF01300 Telomere recombination BSQ33_09175 PF01218 Coproporphyrinogen III oxidase BSQ33_09180 PF08501 Shikimate dehydrogenase substrate binding domain BSQ33_09180 PF01488 Shikimate / quinate 5-dehydrogenase BSQ33_09180 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BSQ33_09190 PF00132 Bacterial transferase hexapeptide (six repeats) BSQ33_09225 PF02743 Cache domain BSQ33_09225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_09225 PF00672 HAMP domain BSQ33_09230 PF03466 LysR substrate binding domain BSQ33_09230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_09235 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BSQ33_09235 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BSQ33_09240 PF04380 Membrane fusogenic activity BSQ33_09245 PF00873 AcrB/AcrD/AcrF family BSQ33_09250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BSQ33_09255 PF13361 UvrD-like helicase C-terminal domain BSQ33_09255 PF00580 UvrD/REP helicase N-terminal domain BSQ33_09290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BSQ33_09290 PF00005 ABC transporter BSQ33_09295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BSQ33_09305 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_09305 PF12911 N-terminal TM domain of oligopeptide transport permease C BSQ33_09315 PF01497 Periplasmic binding protein BSQ33_09320 PF02653 Branched-chain amino acid transport system / permease component BSQ33_09325 PF02653 Branched-chain amino acid transport system / permease component BSQ33_09330 PF00005 ABC transporter BSQ33_09335 PF13407 Periplasmic binding protein domain BSQ33_09340 PF02743 Cache domain BSQ33_09340 PF00672 HAMP domain BSQ33_09340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_09345 PF07992 Pyridine nucleotide-disulphide oxidoreductase BSQ33_09345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BSQ33_09350 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BSQ33_09355 PF01432 Peptidase family M3 BSQ33_09365 PF13361 UvrD-like helicase C-terminal domain BSQ33_09365 PF00580 UvrD/REP helicase N-terminal domain BSQ33_09385 PF01810 LysE type translocator BSQ33_09390 PF00892 EamA-like transporter family BSQ33_09395 PF00270 DEAD/DEAH box helicase BSQ33_09395 PF00570 HRDC domain BSQ33_09395 PF16124 RecQ zinc-binding BSQ33_09395 PF09382 RQC domain BSQ33_09395 PF00271 Helicase conserved C-terminal domain BSQ33_09415 PF02378 Phosphotransferase system, EIIC BSQ33_09420 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BSQ33_09425 PF02378 Phosphotransferase system, EIIC BSQ33_09430 PF00232 Glycosyl hydrolase family 1 BSQ33_09435 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BSQ33_09440 PF00356 Bacterial regulatory proteins, lacI family BSQ33_09450 PF16363 GDP-mannose 4,6 dehydratase BSQ33_09455 PF00483 Nucleotidyl transferase BSQ33_09460 PF04321 RmlD substrate binding domain BSQ33_09465 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BSQ33_09470 PF01061 ABC-2 type transporter BSQ33_09475 PF00005 ABC transporter BSQ33_09485 PF01501 Glycosyl transferase family 8 BSQ33_09485 PF00535 Glycosyl transferase family 2 BSQ33_09490 PF03275 UDP-galactopyranose mutase BSQ33_09495 PF00535 Glycosyl transferase family 2 BSQ33_09500 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BSQ33_09500 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BSQ33_09500 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BSQ33_09505 PF01370 NAD dependent epimerase/dehydratase family BSQ33_09510 PF16363 GDP-mannose 4,6 dehydratase BSQ33_09570 PF00075 RNase H BSQ33_09615 PF04002 RadC-like JAB domain BSQ33_09620 PF02384 N-6 DNA Methylase BSQ33_09635 PF03755 YicC-like family, N-terminal region BSQ33_09635 PF08340 Domain of unknown function (DUF1732) BSQ33_09640 PF01138 3' exoribonuclease family, domain 1 BSQ33_09640 PF03725 3' exoribonuclease family, domain 2 BSQ33_09645 PF00156 Phosphoribosyl transferase domain BSQ33_09650 PF03279 Bacterial lipid A biosynthesis acyltransferase BSQ33_09655 PF03279 Bacterial lipid A biosynthesis acyltransferase BSQ33_09660 PF00440 Bacterial regulatory proteins, tetR family BSQ33_09665 PF04127 DNA / pantothenate metabolism flavoprotein BSQ33_09665 PF02441 Flavoprotein BSQ33_09670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_09670 PF00672 HAMP domain BSQ33_09670 PF02743 Cache domain BSQ33_09675 PF04002 RadC-like JAB domain BSQ33_09685 PF00471 Ribosomal protein L33 BSQ33_09695 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BSQ33_09695 PF06827 Zinc finger found in FPG and IleRS BSQ33_09695 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BSQ33_09700 PF01467 Cytidylyltransferase-like BSQ33_09705 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BSQ33_09710 PF00535 Glycosyl transferase family 2 BSQ33_09715 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BSQ33_09735 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BSQ33_09740 PF04488 Glycosyltransferase sugar-binding region containing DXD motif BSQ33_09755 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BSQ33_09770 PF01370 NAD dependent epimerase/dehydratase family BSQ33_09780 PF02719 Polysaccharide biosynthesis protein BSQ33_09785 PF01370 NAD dependent epimerase/dehydratase family BSQ33_09790 PF02397 Bacterial sugar transferase BSQ33_09800 PF06082 Exopolysaccharide biosynthesis protein YbjH BSQ33_09810 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF BSQ33_09825 PF18412 Outer-membrane lipoprotein Wza C-terminal domain BSQ33_09825 PF10531 SLBB domain BSQ33_09825 PF02563 Polysaccharide biosynthesis/export protein BSQ33_09835 PF00483 Nucleotidyl transferase BSQ33_09840 PF16363 GDP-mannose 4,6 dehydratase BSQ33_09845 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BSQ33_09850 PF01370 NAD dependent epimerase/dehydratase family BSQ33_09875 PF16363 GDP-mannose 4,6 dehydratase BSQ33_09880 PF01370 NAD dependent epimerase/dehydratase family BSQ33_09900 PF08323 Starch synthase catalytic domain BSQ33_09900 PF00534 Glycosyl transferases group 1 BSQ33_09905 PF01050 Mannose-6-phosphate isomerase BSQ33_09905 PF00483 Nucleotidyl transferase BSQ33_09910 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BSQ33_09910 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BSQ33_09910 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BSQ33_09910 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BSQ33_09915 PF02397 Bacterial sugar transferase BSQ33_09920 PF04222 Protein of unknown function (DUF416) BSQ33_09925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BSQ33_09930 PF03167 Uracil DNA glycosylase superfamily BSQ33_09935 PF00216 Bacterial DNA-binding protein BSQ33_09950 PF00392 Bacterial regulatory proteins, gntR family BSQ33_09950 PF00155 Aminotransferase class I and II BSQ33_09955 PF00072 Response regulator receiver domain BSQ33_09955 PF00486 Transcriptional regulatory protein, C terminal BSQ33_09960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_09960 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_09960 PF00672 HAMP domain BSQ33_09965 PF07690 Major Facilitator Superfamily BSQ33_09975 PF02321 Outer membrane efflux protein BSQ33_09985 PF17191 RecG wedge domain BSQ33_09985 PF00271 Helicase conserved C-terminal domain BSQ33_09985 PF00270 DEAD/DEAH box helicase BSQ33_09990 PF02824 TGS domain BSQ33_09990 PF13291 ACT domain BSQ33_09990 PF04607 Region found in RelA / SpoT proteins BSQ33_10000 PF00625 Guanylate kinase BSQ33_10005 PF00375 Sodium:dicarboxylate symporter family BSQ33_10010 PF02592 Putative vitamin uptake transporter BSQ33_10015 PF00474 Sodium:solute symporter family BSQ33_10025 PF00196 Bacterial regulatory proteins, luxR family BSQ33_10025 PF00072 Response regulator receiver domain BSQ33_10030 PF02683 Cytochrome C biogenesis protein transmembrane region BSQ33_10030 PF11412 Disulphide bond corrector protein DsbC BSQ33_10040 PF10415 Fumarase C C-terminus BSQ33_10040 PF00206 Lyase BSQ33_10045 PF00563 EAL domain BSQ33_10045 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_10045 PF13426 PAS domain BSQ33_10045 PF08448 PAS fold BSQ33_10045 PF05231 MASE1 BSQ33_10045 PF08447 PAS fold BSQ33_10050 PF04186 FxsA cytoplasmic membrane protein BSQ33_10055 PF00588 SpoU rRNA Methylase family BSQ33_10060 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_10060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_10060 PF00672 HAMP domain BSQ33_10060 PF16527 Two-component sensor protein CpxA, periplasmic domain BSQ33_10065 PF00486 Transcriptional regulatory protein, C terminal BSQ33_10065 PF00072 Response regulator receiver domain BSQ33_10075 PF01545 Cation efflux family BSQ33_10075 PF16916 Dimerisation domain of Zinc Transporter BSQ33_10080 PF04389 Peptidase family M28 BSQ33_10080 PF04151 Bacterial pre-peptidase C-terminal domain BSQ33_10085 PF00365 Phosphofructokinase BSQ33_10090 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BSQ33_10095 PF06005 Cell division protein ZapB BSQ33_10100 PF02219 Methylenetetrahydrofolate reductase BSQ33_10105 PF00696 Amino acid kinase family BSQ33_10105 PF00742 Homoserine dehydrogenase BSQ33_10105 PF03447 Homoserine dehydrogenase, NAD binding domain BSQ33_10110 PF01053 Cys/Met metabolism PLP-dependent enzyme BSQ33_10115 PF01340 Met Apo-repressor, MetJ BSQ33_10125 PF00390 Malic enzyme, N-terminal domain BSQ33_10125 PF03949 Malic enzyme, NAD binding domain BSQ33_10130 PF01197 Ribosomal protein L31 BSQ33_10135 PF18074 Primosomal protein N C-terminal domain BSQ33_10135 PF17764 3′ DNA-binding domain (3′BD) BSQ33_10135 PF00271 Helicase conserved C-terminal domain BSQ33_10135 PF00270 DEAD/DEAH box helicase BSQ33_10135 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BSQ33_10140 PF00356 Bacterial regulatory proteins, lacI family BSQ33_10150 PF00227 Proteasome subunit BSQ33_10155 PF10431 C-terminal, D2-small domain, of ClpB protein BSQ33_10155 PF00004 ATPase family associated with various cellular activities (AAA) BSQ33_10155 PF07724 AAA domain (Cdc48 subfamily) BSQ33_10160 PF01040 UbiA prenyltransferase family BSQ33_10165 PF03737 Aldolase/RraA BSQ33_10170 PF01554 MatE BSQ33_10175 PF00121 Triosephosphate isomerase BSQ33_10195 PF00166 Chaperonin 10 Kd subunit BSQ33_10200 PF00118 TCP-1/cpn60 chaperonin family BSQ33_10205 PF00005 ABC transporter BSQ33_10210 PF04055 Radical SAM superfamily BSQ33_10215 PF09285 Elongation factor P, C-terminal BSQ33_10215 PF08207 Elongation factor P (EF-P) KOW-like domain BSQ33_10215 PF01132 Elongation factor P (EF-P) OB domain BSQ33_10220 PF02313 Fumarate reductase subunit D BSQ33_10225 PF02300 Fumarate reductase subunit C BSQ33_10230 PF13183 4Fe-4S dicluster domain BSQ33_10230 PF13085 2Fe-2S iron-sulfur cluster binding domain BSQ33_10235 PF00890 FAD binding domain BSQ33_10235 PF02910 Fumarate reductase flavoprotein C-term BSQ33_10240 PF00152 tRNA synthetases class II (D, K and N) BSQ33_10245 PF00581 Rhodanese-like domain BSQ33_10250 PF02556 Preprotein translocase subunit SecB BSQ33_10255 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BSQ33_10255 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BSQ33_10260 PF00132 Bacterial transferase hexapeptide (six repeats) BSQ33_10260 PF06426 Serine acetyltransferase, N-terminal BSQ33_10265 PF10400 Virulence activator alpha C-term BSQ33_10265 PF03551 Transcriptional regulator PadR-like family BSQ33_10270 PF00311 Phosphoenolpyruvate carboxylase BSQ33_10275 PF07687 Peptidase dimerisation domain BSQ33_10275 PF01546 Peptidase family M20/M25/M40 BSQ33_10280 PF01118 Semialdehyde dehydrogenase, NAD binding domain BSQ33_10280 PF02774 Semialdehyde dehydrogenase, dimerisation domain BSQ33_10285 PF00696 Amino acid kinase family BSQ33_10290 PF00764 Arginosuccinate synthase BSQ33_10310 PF08534 Redoxin BSQ33_10310 PF00462 Glutaredoxin BSQ33_10315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_10315 PF03466 LysR substrate binding domain BSQ33_10320 PF17092 Penicillin-binding protein OB-like domain BSQ33_10320 PF00912 Transglycosylase BSQ33_10320 PF00905 Penicillin binding protein transpeptidase domain BSQ33_10340 PF11741 AMIN domain BSQ33_10340 PF00263 Bacterial type II and III secretion system protein BSQ33_10340 PF07660 Secretin and TonB N terminus short domain BSQ33_10340 PF03958 Bacterial type II/III secretion system short domain BSQ33_10345 PF01202 Shikimate kinase BSQ33_10360 PF02086 D12 class N6 adenine-specific DNA methyltransferase BSQ33_10365 PF00834 Ribulose-phosphate 3 epimerase family BSQ33_10370 PF13419 Haloacid dehalogenase-like hydrolase BSQ33_10375 PF00579 tRNA synthetases class I (W and Y) BSQ33_10380 PF07992 Pyridine nucleotide-disulphide oxidoreductase BSQ33_10390 PF00150 Cellulase (glycosyl hydrolase family 5) BSQ33_10390 PF02013 Cellulose or protein binding domain BSQ33_10395 PF00942 Cellulose binding domain BSQ33_10395 PF12891 Glycoside hydrolase family 44 BSQ33_10410 PF01717 Cobalamin-independent synthase, Catalytic domain BSQ33_10425 PF00109 Beta-ketoacyl synthase, N-terminal domain BSQ33_10425 PF02801 Beta-ketoacyl synthase, C-terminal domain BSQ33_10435 PF00109 Beta-ketoacyl synthase, N-terminal domain BSQ33_10435 PF02801 Beta-ketoacyl synthase, C-terminal domain BSQ33_10445 PF00202 Aminotransferase class-III BSQ33_10480 PF00117 Glutamine amidotransferase class-I BSQ33_10485 PF00202 Aminotransferase class-III BSQ33_10490 PF04958 Arginine N-succinyltransferase beta subunit BSQ33_10500 PF13545 Crp-like helix-turn-helix domain BSQ33_10500 PF00027 Cyclic nucleotide-binding domain BSQ33_10505 PF00485 Phosphoribulokinase / Uridine kinase family BSQ33_10510 PF06794 Uncharacterised protein family (UPF0270) BSQ33_10515 PF00561 alpha/beta hydrolase fold BSQ33_10525 PF00005 ABC transporter BSQ33_10525 PF12848 ABC transporter BSQ33_10530 PF02525 Flavodoxin-like fold BSQ33_10535 PF02254 TrkA-N domain BSQ33_10535 PF00999 Sodium/hydrogen exchanger family BSQ33_10545 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BSQ33_10550 PF01112 Asparaginase BSQ33_10555 PF00709 Adenylosuccinate synthetase BSQ33_10560 PF08238 Sel1 repeat BSQ33_10565 PF17876 Cold shock domain BSQ33_10565 PF00575 S1 RNA binding domain BSQ33_10565 PF00773 RNB domain BSQ33_10565 PF08206 Ribonuclease B OB domain BSQ33_10565 PF08461 Ribonuclease R winged-helix domain BSQ33_10570 PF08032 RNA 2'-O ribose methyltransferase substrate binding BSQ33_10570 PF00588 SpoU rRNA Methylase family BSQ33_10575 PF00338 Ribosomal protein S10p/S20e BSQ33_10580 PF00297 Ribosomal protein L3 BSQ33_10590 PF00276 Ribosomal protein L23 BSQ33_10595 PF03947 Ribosomal Proteins L2, C-terminal domain BSQ33_10595 PF00181 Ribosomal Proteins L2, RNA binding domain BSQ33_10600 PF00203 Ribosomal protein S19 BSQ33_10605 PF00237 Ribosomal protein L22p/L17e BSQ33_10615 PF00252 Ribosomal protein L16p/L10e BSQ33_10620 PF00831 Ribosomal L29 protein BSQ33_10625 PF00366 Ribosomal protein S17 BSQ33_10630 PF00238 Ribosomal protein L14p/L23e BSQ33_10635 PF00467 KOW motif BSQ33_10635 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BSQ33_10640 PF00281 Ribosomal protein L5 BSQ33_10640 PF00673 ribosomal L5P family C-terminus BSQ33_10645 PF00253 Ribosomal protein S14p/S29e BSQ33_10650 PF00410 Ribosomal protein S8 BSQ33_10655 PF00347 Ribosomal protein L6 BSQ33_10660 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BSQ33_10665 PF03719 Ribosomal protein S5, C-terminal domain BSQ33_10665 PF00333 Ribosomal protein S5, N-terminal domain BSQ33_10670 PF00327 Ribosomal protein L30p/L7e BSQ33_10680 PF00344 SecY translocase BSQ33_10685 PF00444 Ribosomal protein L36 BSQ33_10690 PF00416 Ribosomal protein S13/S18 BSQ33_10695 PF00411 Ribosomal protein S11 BSQ33_10700 PF01479 S4 domain BSQ33_10700 PF00163 Ribosomal protein S4/S9 N-terminal domain BSQ33_10710 PF01196 Ribosomal protein L17 BSQ33_10720 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BSQ33_10720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BSQ33_10730 PF13673 Acetyltransferase (GNAT) domain BSQ33_10735 PF02872 5'-nucleotidase, C-terminal domain BSQ33_10735 PF00149 Calcineurin-like phosphoesterase BSQ33_10740 PF10414 Sirohaem synthase dimerisation region BSQ33_10740 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BSQ33_10740 PF14824 Sirohaem biosynthesis protein central BSQ33_10750 PF00009 Elongation factor Tu GTP binding domain BSQ33_10755 PF02080 TrkA-C domain BSQ33_10755 PF03600 Citrate transporter BSQ33_10780 PF00005 ABC transporter BSQ33_10800 PF01625 Peptide methionine sulfoxide reductase BSQ33_10805 PF17243 POTRA domain TamA domain 1 BSQ33_10805 PF07244 Surface antigen variable number repeat BSQ33_10805 PF01103 Surface antigen BSQ33_10810 PF04357 TamB, inner membrane protein subunit of TAM complex BSQ33_10815 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BSQ33_10820 PF00719 Inorganic pyrophosphatase BSQ33_10830 PF01225 Mur ligase family, catalytic domain BSQ33_10830 PF02875 Mur ligase family, glutamate ligase domain BSQ33_10830 PF08245 Mur ligase middle domain BSQ33_10835 PF02441 Flavoprotein BSQ33_10845 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_10850 PF00005 ABC transporter BSQ33_10855 PF04751 Protein of unknown function (DUF615) BSQ33_10860 PF01523 Putative modulator of DNA gyrase BSQ33_10880 PF05638 Type VI secretion system effector, Hcp BSQ33_10885 PF00571 CBS domain BSQ33_10885 PF01769 Divalent cation transporter BSQ33_10885 PF03448 MgtE intracellular N domain BSQ33_10890 PF00381 PTS HPr component phosphorylation site BSQ33_10895 PF03668 P-loop ATPase protein family BSQ33_10900 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BSQ33_10905 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BSQ33_10910 PF00309 Sigma-54 factor, Activator interacting domain (AID) BSQ33_10910 PF04552 Sigma-54, DNA binding domain BSQ33_10910 PF04963 Sigma-54 factor, core binding domain BSQ33_10915 PF00005 ABC transporter BSQ33_10915 PF12399 Branched-chain amino acid ATP-binding cassette transporter BSQ33_10935 PF00571 CBS domain BSQ33_10935 PF01380 SIS domain BSQ33_10940 PF01699 Sodium/calcium exchanger protein BSQ33_10945 PF00005 ABC transporter BSQ33_10950 PF02405 Permease MlaE BSQ33_10955 PF02470 MlaD protein BSQ33_10960 PF05494 MlaC protein BSQ33_10970 PF01722 BolA-like protein BSQ33_10975 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BSQ33_10980 PF01553 Acyltransferase BSQ33_10985 PF01042 Endoribonuclease L-PSP BSQ33_10990 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BSQ33_10990 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BSQ33_10995 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BSQ33_10995 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BSQ33_11000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BSQ33_11000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BSQ33_11005 PF03123 CAT RNA binding domain BSQ33_11005 PF00874 PRD domain BSQ33_11010 PF00367 phosphotransferase system, EIIB BSQ33_11010 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BSQ33_11010 PF02378 Phosphotransferase system, EIIC BSQ33_11015 PF00232 Glycosyl hydrolase family 1 BSQ33_11020 PF13638 PIN domain BSQ33_11020 PF02562 PhoH-like protein BSQ33_11030 PF12137 RNA polymerase recycling family C-terminal BSQ33_11030 PF00271 Helicase conserved C-terminal domain BSQ33_11030 PF00176 SNF2 family N-terminal domain BSQ33_11030 PF18339 RapA N-terminal Tudor like domain 1 BSQ33_11030 PF18337 RapA N-terminal Tudor like domain BSQ33_11040 PF00849 RNA pseudouridylate synthase BSQ33_11045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BSQ33_11045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BSQ33_11050 PF05987 Bacterial protein of unknown function (DUF898) BSQ33_11055 PF01435 Peptidase family M48 BSQ33_11060 PF00133 tRNA synthetases class I (I, L, M and V) BSQ33_11060 PF08264 Anticodon-binding domain of tRNA BSQ33_11060 PF10458 Valyl tRNA synthetase tRNA binding arm BSQ33_11065 PF04364 DNA polymerase III chi subunit, HolC BSQ33_11070 PF02789 Cytosol aminopeptidase family, N-terminal domain BSQ33_11070 PF00883 Cytosol aminopeptidase family, catalytic domain BSQ33_11075 PF03739 Lipopolysaccharide export system permease LptF/LptG BSQ33_11080 PF03739 Lipopolysaccharide export system permease LptF/LptG BSQ33_11115 PF01966 HD domain BSQ33_11165 PF00330 Aconitase family (aconitate hydratase) BSQ33_11170 PF00180 Isocitrate/isopropylmalate dehydrogenase BSQ33_11175 PF00682 HMGL-like BSQ33_11175 PF08502 LeuA allosteric (dimerisation) domain BSQ33_11190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_11190 PF03466 LysR substrate binding domain BSQ33_11195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BSQ33_11195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BSQ33_11195 PF00205 Thiamine pyrophosphate enzyme, central domain BSQ33_11200 PF10369 Small subunit of acetolactate synthase BSQ33_11205 PF00155 Aminotransferase class I and II BSQ33_11205 PF00392 Bacterial regulatory proteins, gntR family BSQ33_11210 PF00202 Aminotransferase class-III BSQ33_11215 PF00171 Aldehyde dehydrogenase family BSQ33_11220 PF03480 Bacterial extracellular solute-binding protein, family 7 BSQ33_11230 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BSQ33_11235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BSQ33_11235 PF01842 ACT domain BSQ33_11235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BSQ33_11240 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BSQ33_11245 PF01812 5-formyltetrahydrofolate cyclo-ligase family BSQ33_11255 PF05164 Cell division protein ZapA BSQ33_11260 PF03695 Uncharacterised protein family (UPF0149) BSQ33_11265 PF01494 FAD binding domain BSQ33_11270 PF01494 FAD binding domain BSQ33_11290 PF03937 Flavinator of succinate dehydrogenase BSQ33_11300 PF00890 FAD binding domain BSQ33_11300 PF02910 Fumarate reductase flavoprotein C-term BSQ33_11305 PF08281 Sigma-70, region 4 BSQ33_11305 PF04542 Sigma-70 region 2 BSQ33_11310 PF03873 Anti sigma-E protein RseA, C-terminal domain BSQ33_11310 PF03872 Anti sigma-E protein RseA, N-terminal domain BSQ33_11315 PF03888 MucB/RseB N-terminal domain BSQ33_11315 PF17188 MucB/RseB C-terminal domain BSQ33_11325 PF03144 Elongation factor Tu domain 2 BSQ33_11325 PF00009 Elongation factor Tu GTP binding domain BSQ33_11325 PF06421 GTP-binding protein LepA C-terminus BSQ33_11325 PF00679 Elongation factor G C-terminus BSQ33_11330 PF10502 Signal peptidase, peptidase S26 BSQ33_11335 PF14622 Ribonuclease-III-like BSQ33_11335 PF00035 Double-stranded RNA binding motif BSQ33_11340 PF01926 50S ribosome-binding GTPase BSQ33_11340 PF07650 KH domain BSQ33_11345 PF11967 Recombination protein O N terminal BSQ33_11345 PF02565 Recombination protein O C terminal BSQ33_11350 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BSQ33_11355 PF01648 4'-phosphopantetheinyl transferase superfamily BSQ33_11360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_11360 PF00672 HAMP domain BSQ33_11360 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_11360 PF01627 Hpt domain BSQ33_11360 PF00072 Response regulator receiver domain BSQ33_11360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BSQ33_11365 PF01938 TRAM domain BSQ33_11365 PF05958 tRNA (Uracil-5-)-methyltransferase BSQ33_11370 PF02824 TGS domain BSQ33_11370 PF13291 ACT domain BSQ33_11370 PF04607 Region found in RelA / SpoT proteins BSQ33_11375 PF03819 MazG nucleotide pyrophosphohydrolase domain BSQ33_11380 PF00117 Glutamine amidotransferase class-I BSQ33_11380 PF06418 CTP synthase N-terminus BSQ33_11385 PF00113 Enolase, C-terminal TIM barrel domain BSQ33_11385 PF03952 Enolase, N-terminal domain BSQ33_11390 PF12627 Probable RNA and SrmB- binding site of polymerase A BSQ33_11390 PF01966 HD domain BSQ33_11390 PF01743 Poly A polymerase head domain BSQ33_11395 PF08239 Bacterial SH3 domain BSQ33_11400 PF01384 Phosphate transporter family BSQ33_11405 PF01865 Protein of unknown function DUF47 BSQ33_11410 PF01928 CYTH domain BSQ33_11415 PF00672 HAMP domain BSQ33_11415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_11415 PF12729 Four helix bundle sensory module for signal transduction BSQ33_11420 PF08335 GlnD PII-uridylyltransferase BSQ33_11420 PF03710 Glutamate-ammonia ligase adenylyltransferase BSQ33_11425 PF01467 Cytidylyltransferase-like BSQ33_11425 PF00294 pfkB family carbohydrate kinase BSQ33_11430 PF02321 Outer membrane efflux protein BSQ33_11435 PF00293 NUDIX domain BSQ33_11440 PF06853 Protein of unknown function (DUF1249) BSQ33_11445 PF00149 Calcineurin-like phosphoesterase BSQ33_11450 PF05728 Uncharacterised protein family (UPF0227) BSQ33_11455 PF00986 DNA gyrase B subunit, carboxyl terminus BSQ33_11455 PF01751 Toprim domain BSQ33_11455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_11455 PF00204 DNA gyrase B BSQ33_11460 PF00521 DNA gyrase/topoisomerase IV, subunit A BSQ33_11460 PF03989 DNA gyrase C-terminal domain, beta-propeller BSQ33_11475 PF05114 Protein of unknown function (DUF692) BSQ33_11490 PF08281 Sigma-70, region 4 BSQ33_11490 PF04542 Sigma-70 region 2 BSQ33_11495 PF03884 DNA gyrase inhibitor YacG BSQ33_11500 PF07072 Cell division protein BSQ33_11505 PF01121 Dephospho-CoA kinase BSQ33_11510 PF06750 Bacterial Peptidase A24 N-terminal domain BSQ33_11510 PF01478 Type IV leader peptidase family BSQ33_11515 PF00482 Type II secretion system (T2SS), protein F BSQ33_11520 PF00437 Type II/IV secretion system protein BSQ33_11520 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BSQ33_11525 PF00114 Pilin (bacterial filament) BSQ33_11525 PF07963 Prokaryotic N-terminal methylation motif BSQ33_11535 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BSQ33_11535 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BSQ33_11540 PF01510 N-acetylmuramoyl-L-alanine amidase BSQ33_11545 PF00258 Flavodoxin BSQ33_11550 PF00589 Phage integrase family BSQ33_11550 PF02899 Phage integrase, N-terminal SAM-like domain BSQ33_11555 PF13098 Thioredoxin-like domain BSQ33_11555 PF10411 Disulfide bond isomerase protein N-terminus BSQ33_11560 PF17768 RecJ OB domain BSQ33_11560 PF02272 DHHA1 domain BSQ33_11560 PF01368 DHH family BSQ33_11565 PF00392 Bacterial regulatory proteins, gntR family BSQ33_11565 PF07729 FCD domain BSQ33_11570 PF00456 Transketolase, thiamine diphosphate binding domain BSQ33_11570 PF17831 Pyruvate dehydrogenase E1 component middle domain BSQ33_11575 PF02817 e3 binding domain BSQ33_11575 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BSQ33_11575 PF00364 Biotin-requiring enzyme BSQ33_11580 PF07992 Pyridine nucleotide-disulphide oxidoreductase BSQ33_11580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BSQ33_11585 PF00440 Bacterial regulatory proteins, tetR family BSQ33_11590 PF00156 Phosphoribosyl transferase domain BSQ33_11595 PF00484 Carbonic anhydrase BSQ33_11600 PF00005 ABC transporter BSQ33_11605 PF01061 ABC-2 type transporter BSQ33_11610 PF02615 Malate/L-lactate dehydrogenase BSQ33_11615 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BSQ33_11620 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BSQ33_11625 PF03480 Bacterial extracellular solute-binding protein, family 7 BSQ33_11630 PF00596 Class II Aldolase and Adducin N-terminal domain BSQ33_11635 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BSQ33_11635 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BSQ33_11640 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BSQ33_11645 PF09339 IclR helix-turn-helix domain BSQ33_11645 PF01614 Bacterial transcriptional regulator BSQ33_11650 PF01261 Xylose isomerase-like TIM barrel BSQ33_11655 PF00005 ABC transporter BSQ33_11660 PF02653 Branched-chain amino acid transport system / permease component BSQ33_11685 PF02569 Pantoate-beta-alanine ligase BSQ33_11690 PF02548 Ketopantoate hydroxymethyltransferase BSQ33_11695 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BSQ33_11700 PF01743 Poly A polymerase head domain BSQ33_11700 PF12627 Probable RNA and SrmB- binding site of polymerase A BSQ33_11700 PF12626 Polymerase A arginine-rich C-terminus BSQ33_11705 PF00749 tRNA synthetases class I (E and Q), catalytic domain BSQ33_11710 PF01258 Prokaryotic dksA/traR C4-type zinc finger BSQ33_11715 PF03749 Sugar fermentation stimulation protein RE domain BSQ33_11715 PF17746 SfsA N-terminal OB domain BSQ33_11720 PF04408 Helicase associated domain (HA2) BSQ33_11720 PF00270 DEAD/DEAH box helicase BSQ33_11720 PF00271 Helicase conserved C-terminal domain BSQ33_11720 PF08482 ATP-dependent helicase C-terminal BSQ33_11725 PF00912 Transglycosylase BSQ33_11725 PF14814 Bifunctional transglycosylase second domain BSQ33_11725 PF00905 Penicillin binding protein transpeptidase domain BSQ33_11730 PF11791 Aconitate B N-terminal domain BSQ33_11730 PF06434 Aconitate hydratase 2 N-terminus BSQ33_11730 PF00330 Aconitase family (aconitate hydratase) BSQ33_11735 PF06062 Uncharacterised protein family (UPF0231) BSQ33_11740 PF00543 Nitrogen regulatory protein P-II BSQ33_11745 PF00909 Ammonium Transporter Family BSQ33_11750 PF05175 Methyltransferase small domain BSQ33_11750 PF08468 Methyltransferase small domain N-terminal BSQ33_11755 PF01594 AI-2E family transporter BSQ33_11760 PF00202 Aminotransferase class-III BSQ33_11765 PF01521 Iron-sulphur cluster biosynthesis BSQ33_11770 PF01476 LysM domain BSQ33_11770 PF01551 Peptidase family M23 BSQ33_11770 PF08525 Opacity-associated protein A N-terminal motif BSQ33_11775 PF01479 S4 domain BSQ33_11775 PF00579 tRNA synthetases class I (W and Y) BSQ33_11780 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BSQ33_11785 PF13609 Gram-negative porin BSQ33_11790 PF03449 Transcription elongation factor, N-terminal BSQ33_11790 PF01272 Transcription elongation factor, GreA/GreB, C-term BSQ33_11795 PF01985 CRS1 / YhbY (CRM) domain BSQ33_11800 PF01728 FtsJ-like methyltransferase BSQ33_11805 PF01434 Peptidase family M41 BSQ33_11805 PF00004 ATPase family associated with various cellular activities (AAA) BSQ33_11805 PF06480 FtsH Extracellular BSQ33_11805 PF17862 AAA+ lid domain BSQ33_11810 PF00809 Pterin binding enzyme BSQ33_11820 PF03840 Preprotein translocase SecG subunit BSQ33_11835 PF17384 RimP C-terminal SH3 domain BSQ33_11835 PF02576 RimP N-terminal domain BSQ33_11840 PF00575 S1 RNA binding domain BSQ33_11840 PF08529 NusA N-terminal domain BSQ33_11840 PF13184 NusA-like KH domain BSQ33_11845 PF04760 Translation initiation factor IF-2, N-terminal region BSQ33_11845 PF08364 Bacterial translation initiation factor IF-2 associated region BSQ33_11845 PF11987 Translation-initiation factor 2 BSQ33_11845 PF00009 Elongation factor Tu GTP binding domain BSQ33_11850 PF02033 Ribosome-binding factor A BSQ33_11855 PF01509 TruB family pseudouridylate synthase (N terminal domain) BSQ33_11855 PF09157 Pseudouridine synthase II TruB, C-terminal BSQ33_11855 PF16198 tRNA pseudouridylate synthase B C-terminal domain BSQ33_11860 PF00312 Ribosomal protein S15 BSQ33_11865 PF03725 3' exoribonuclease family, domain 2 BSQ33_11865 PF00575 S1 RNA binding domain BSQ33_11865 PF00013 KH domain BSQ33_11865 PF01138 3' exoribonuclease family, domain 1 BSQ33_11865 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BSQ33_11870 PF07719 Tetratricopeptide repeat BSQ33_11870 PF13181 Tetratricopeptide repeat BSQ33_11875 PF01554 MatE BSQ33_11890 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_11890 PF03707 Bacterial signalling protein N terminal repeat BSQ33_11890 PF00563 EAL domain BSQ33_11900 PF13508 Acetyltransferase (GNAT) domain BSQ33_11910 PF00583 Acetyltransferase (GNAT) family BSQ33_11915 PF02397 Bacterial sugar transferase BSQ33_11950 PF01501 Glycosyl transferase family 8 BSQ33_11950 PF00535 Glycosyl transferase family 2 BSQ33_11955 PF13439 Glycosyltransferase Family 4 BSQ33_11955 PF00534 Glycosyl transferases group 1 BSQ33_11960 PF00132 Bacterial transferase hexapeptide (six repeats) BSQ33_11965 PF00534 Glycosyl transferases group 1 BSQ33_11965 PF13439 Glycosyltransferase Family 4 BSQ33_11985 PF00132 Bacterial transferase hexapeptide (six repeats) BSQ33_11985 PF12804 MobA-like NTP transferase domain BSQ33_11985 PF14602 Hexapeptide repeat of succinyl-transferase BSQ33_11990 PF01522 Polysaccharide deacetylase BSQ33_11990 PF03422 Carbohydrate binding module (family 6) BSQ33_11990 PF00457 Glycosyl hydrolases family 11 BSQ33_12005 PF13609 Gram-negative porin BSQ33_12010 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BSQ33_12015 PF01451 Low molecular weight phosphotyrosine protein phosphatase BSQ33_12025 PF00072 Response regulator receiver domain BSQ33_12025 PF00486 Transcriptional regulatory protein, C terminal BSQ33_12040 PF03144 Elongation factor Tu domain 2 BSQ33_12040 PF16658 Class II release factor RF3, C-terminal domain BSQ33_12040 PF00009 Elongation factor Tu GTP binding domain BSQ33_12045 PF00271 Helicase conserved C-terminal domain BSQ33_12045 PF00270 DEAD/DEAH box helicase BSQ33_12050 PF05175 Methyltransferase small domain BSQ33_12055 PF05525 Branched-chain amino acid transport protein BSQ33_12070 PF01336 OB-fold nucleic acid binding domain BSQ33_12070 PF00152 tRNA synthetases class II (D, K and N) BSQ33_12075 PF00158 Sigma-54 interaction domain BSQ33_12075 PF00072 Response regulator receiver domain BSQ33_12075 PF02954 Bacterial regulatory protein, Fis family BSQ33_12085 PF00248 Aldo/keto reductase family BSQ33_12090 PF02976 DNA mismatch repair enzyme MutH BSQ33_12095 PF00293 NUDIX domain BSQ33_12100 PF00391 PEP-utilising enzyme, mobile domain BSQ33_12100 PF05524 PEP-utilising enzyme, N-terminal BSQ33_12100 PF02896 PEP-utilising enzyme, TIM barrel domain BSQ33_12100 PF01590 GAF domain BSQ33_12105 PF01925 Sulfite exporter TauE/SafE BSQ33_12110 PF01790 Prolipoprotein diacylglyceryl transferase BSQ33_12120 PF00303 Thymidylate synthase BSQ33_12125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_12125 PF03466 LysR substrate binding domain BSQ33_12130 PF01022 Bacterial regulatory protein, arsR family BSQ33_12140 PF03023 Lipid II flippase MurJ BSQ33_12145 PF06574 FAD synthetase BSQ33_12145 PF01687 Riboflavin kinase BSQ33_12150 PF08264 Anticodon-binding domain of tRNA BSQ33_12150 PF00133 tRNA synthetases class I (I, L, M and V) BSQ33_12150 PF06827 Zinc finger found in FPG and IleRS BSQ33_12155 PF01252 Signal peptidase (SPase) II BSQ33_12160 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BSQ33_12165 PF02401 LytB protein BSQ33_12170 PF02554 Carbon starvation protein CstA BSQ33_12180 PF13580 SIS domain BSQ33_12185 PF03702 Anhydro-N-acetylmuramic acid kinase BSQ33_12190 PF00933 Glycosyl hydrolase family 3 N terminal domain BSQ33_12195 PF04397 LytTr DNA-binding domain BSQ33_12195 PF00072 Response regulator receiver domain BSQ33_12200 PF07694 5TMR of 5TMR-LYT BSQ33_12200 PF06580 Histidine kinase BSQ33_12205 PF00793 DAHP synthetase I family BSQ33_12210 PF02153 Prephenate dehydrogenase BSQ33_12210 PF01817 Chorismate mutase type II BSQ33_12215 PF07238 PilZ domain BSQ33_12220 PF12848 ABC transporter BSQ33_12220 PF00005 ABC transporter BSQ33_12225 PF01464 Transglycosylase SLT domain BSQ33_12225 PF14718 Soluble lytic murein transglycosylase L domain BSQ33_12230 PF01371 Trp repressor protein BSQ33_12235 PF10415 Fumarase C C-terminus BSQ33_12235 PF00206 Lyase BSQ33_12245 PF01931 Protein of unknown function DUF84 BSQ33_12250 PF00563 EAL domain BSQ33_12250 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_12255 PF13416 Bacterial extracellular solute-binding protein BSQ33_12260 PF01817 Chorismate mutase type II BSQ33_12260 PF00800 Prephenate dehydratase BSQ33_12265 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BSQ33_12270 PF13525 Outer membrane lipoprotein BSQ33_12275 PF01479 S4 domain BSQ33_12275 PF00849 RNA pseudouridylate synthase BSQ33_12285 PF17871 AAA lid domain BSQ33_12285 PF02861 Clp amino terminal domain, pathogenicity island component BSQ33_12285 PF00004 ATPase family associated with various cellular activities (AAA) BSQ33_12285 PF10431 C-terminal, D2-small domain, of ClpB protein BSQ33_12285 PF07724 AAA domain (Cdc48 subfamily) BSQ33_12400 PF05840 Bacteriophage replication gene A protein (GPA) BSQ33_12425 PF02899 Phage integrase, N-terminal SAM-like domain BSQ33_12425 PF00589 Phage integrase family BSQ33_12430 PF17191 RecG wedge domain BSQ33_12430 PF13749 Putative ATP-dependent DNA helicase recG C-terminal BSQ33_12430 PF00270 DEAD/DEAH box helicase BSQ33_12440 PF00881 Nitroreductase family BSQ33_12445 PF12838 4Fe-4S dicluster domain BSQ33_12455 PF04381 Putative exonuclease, RdgC BSQ33_12460 PF00072 Response regulator receiver domain BSQ33_12460 PF00486 Transcriptional regulatory protein, C terminal BSQ33_12465 PF11808 Phosphate regulon sensor protein PhoR BSQ33_12465 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_12465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_12465 PF00989 PAS fold BSQ33_12470 PF12849 PBP superfamily domain BSQ33_12475 PF02541 Ppx/GppA phosphatase family BSQ33_12480 PF17941 Polyphosphate kinase C-terminal domain 1 BSQ33_12480 PF13089 Polyphosphate kinase N-terminal domain BSQ33_12480 PF02503 Polyphosphate kinase middle domain BSQ33_12480 PF13090 Polyphosphate kinase C-terminal domain 2 BSQ33_12485 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_12490 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_12495 PF00005 ABC transporter BSQ33_12500 PF01895 PhoU domain BSQ33_12505 PF10417 C-terminal domain of 1-Cys peroxiredoxin BSQ33_12505 PF00578 AhpC/TSA family BSQ33_12510 PF03466 LysR substrate binding domain BSQ33_12510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_12515 PF01274 Malate synthase BSQ33_12520 PF00463 Isocitrate lyase family BSQ33_12525 PF00571 CBS domain BSQ33_12525 PF00478 IMP dehydrogenase / GMP reductase domain BSQ33_12530 PF02547 Queuosine biosynthesis protein BSQ33_12535 PF01702 Queuine tRNA-ribosyltransferase BSQ33_12540 PF02699 Preprotein translocase subunit BSQ33_12545 PF02355 Protein export membrane protein BSQ33_12545 PF13721 SecD export protein N-terminal TM region BSQ33_12545 PF07549 SecD/SecF GG Motif BSQ33_12550 PF07549 SecD/SecF GG Motif BSQ33_12550 PF02355 Protein export membrane protein BSQ33_12555 PF00459 Inositol monophosphatase family BSQ33_12560 PF00588 SpoU rRNA Methylase family BSQ33_12565 PF02082 Transcriptional regulator BSQ33_12570 PF00266 Aminotransferase class-V BSQ33_12575 PF01592 NifU-like N terminal domain BSQ33_12580 PF01521 Iron-sulphur cluster biosynthesis BSQ33_12585 PF07743 HSCB C-terminal oligomerisation domain BSQ33_12585 PF00226 DnaJ domain BSQ33_12590 PF00012 Hsp70 protein BSQ33_12595 PF00111 2Fe-2S iron-sulfur cluster binding domain BSQ33_12600 PF04384 Iron-sulphur cluster assembly BSQ33_12605 PF12404 Peptidase BSQ33_12605 PF00883 Cytosol aminopeptidase family, catalytic domain BSQ33_12610 PF00334 Nucleoside diphosphate kinase BSQ33_12615 PF04055 Radical SAM superfamily BSQ33_12620 PF13464 Domain of unknown function (DUF4115) BSQ33_12625 PF04551 GcpE protein BSQ33_12630 PF03129 Anticodon binding domain BSQ33_12630 PF13393 Histidyl-tRNA synthetase BSQ33_12635 PF09976 Tetratricopeptide repeat-like domain BSQ33_12640 PF13360 PQQ-like domain BSQ33_12645 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BSQ33_12645 PF01926 50S ribosome-binding GTPase BSQ33_12655 PF13742 OB-fold nucleic acid binding domain BSQ33_12655 PF02601 Exonuclease VII, large subunit BSQ33_12660 PF00478 IMP dehydrogenase / GMP reductase domain BSQ33_12660 PF00571 CBS domain BSQ33_12665 PF00117 Glutamine amidotransferase class-I BSQ33_12665 PF00958 GMP synthase C terminal domain BSQ33_12665 PF02540 NAD synthase BSQ33_12700 PF13683 Integrase core domain BSQ33_12700 PF13276 HTH-like domain BSQ33_12705 PF01527 Transposase BSQ33_12710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_12710 PF03466 LysR substrate binding domain BSQ33_12715 PF03466 LysR substrate binding domain BSQ33_12715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_12740 PF02805 Metal binding domain of Ada BSQ33_12740 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BSQ33_12740 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BSQ33_12740 PF12833 Helix-turn-helix domain BSQ33_12750 PF01757 Acyltransferase family BSQ33_12770 PF00392 Bacterial regulatory proteins, gntR family BSQ33_12785 PF08220 DeoR-like helix-turn-helix domain BSQ33_12785 PF00455 DeoR C terminal sensor domain BSQ33_12790 PF01791 DeoC/LacD family aldolase BSQ33_12795 PF00294 pfkB family carbohydrate kinase BSQ33_12800 PF07690 Major Facilitator Superfamily BSQ33_12815 PF07690 Major Facilitator Superfamily BSQ33_12835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_12835 PF03466 LysR substrate binding domain BSQ33_12845 PF07690 Major Facilitator Superfamily BSQ33_12850 PF09278 MerR, DNA binding BSQ33_12850 PF00376 MerR family regulatory protein BSQ33_12855 PF00583 Acetyltransferase (GNAT) family BSQ33_12860 PF02321 Outer membrane efflux protein BSQ33_12865 PF00873 AcrB/AcrD/AcrF family BSQ33_12870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BSQ33_12870 PF00529 HlyD membrane-fusion protein of T1SS BSQ33_12875 PF00072 Response regulator receiver domain BSQ33_12875 PF00486 Transcriptional regulatory protein, C terminal BSQ33_12880 PF16736 Single Cache-like BSQ33_12880 PF00989 PAS fold BSQ33_12880 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_12880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_12885 PF01235 Sodium:alanine symporter family BSQ33_12890 PF01966 HD domain BSQ33_12890 PF13286 Phosphohydrolase-associated domain BSQ33_12900 PF01261 Xylose isomerase-like TIM barrel BSQ33_12905 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BSQ33_12915 PF00596 Class II Aldolase and Adducin N-terminal domain BSQ33_12920 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BSQ33_12925 PF03611 PTS system sugar-specific permease component BSQ33_12930 PF00455 DeoR C terminal sensor domain BSQ33_12930 PF08220 DeoR-like helix-turn-helix domain BSQ33_12940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BSQ33_12950 PF12833 Helix-turn-helix domain BSQ33_12960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BSQ33_12960 PF02378 Phosphotransferase system, EIIC BSQ33_12960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BSQ33_13010 PF13391 HNH endonuclease BSQ33_13025 PF00171 Aldehyde dehydrogenase family BSQ33_13030 PF03466 LysR substrate binding domain BSQ33_13030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_13045 PF16861 Carbamoyltransferase C-terminus BSQ33_13045 PF02543 Carbamoyltransferase N-terminus BSQ33_13050 PF03062 MBOAT, membrane-bound O-acyltransferase family BSQ33_13090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_13090 PF08447 PAS fold BSQ33_13095 PF03123 CAT RNA binding domain BSQ33_13095 PF00874 PRD domain BSQ33_13100 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BSQ33_13100 PF02378 Phosphotransferase system, EIIC BSQ33_13100 PF00367 phosphotransferase system, EIIB BSQ33_13105 PF13186 Iron-sulfur cluster-binding domain BSQ33_13105 PF04055 Radical SAM superfamily BSQ33_13115 PF00884 Sulfatase BSQ33_13125 PF12833 Helix-turn-helix domain BSQ33_13125 PF10114 Sensory domain found in PocR BSQ33_13135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BSQ33_13145 PF01116 Fructose-bisphosphate aldolase class-II BSQ33_13160 PF00365 Phosphofructokinase BSQ33_13175 PF00890 FAD binding domain BSQ33_13175 PF03358 NADPH-dependent FMN reductase BSQ33_13175 PF04205 FMN-binding domain BSQ33_13180 PF04205 FMN-binding domain BSQ33_13180 PF03358 NADPH-dependent FMN reductase BSQ33_13180 PF00890 FAD binding domain BSQ33_13185 PF03466 LysR substrate binding domain BSQ33_13185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_13190 PF02424 ApbE family BSQ33_13195 PF00149 Calcineurin-like phosphoesterase BSQ33_13200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_13200 PF13493 Domain of unknown function (DUF4118) BSQ33_13200 PF02702 Osmosensitive K+ channel His kinase sensor domain BSQ33_13200 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_13205 PF00072 Response regulator receiver domain BSQ33_13205 PF00486 Transcriptional regulatory protein, C terminal BSQ33_13210 PF02254 TrkA-N domain BSQ33_13210 PF02080 TrkA-C domain BSQ33_13215 PF02386 Cation transport protein BSQ33_13225 PF00561 alpha/beta hydrolase fold BSQ33_13240 PF01668 SmpB protein BSQ33_13245 PF03364 Polyketide cyclase / dehydrase and lipid transport BSQ33_13250 PF03658 RnfH family Ubiquitin BSQ33_13255 PF04355 SmpA / OmlA family BSQ33_13265 PF02463 RecF/RecN/SMC N terminal domain BSQ33_13275 PF01025 GrpE BSQ33_13285 PF16868 NMT1-like family BSQ33_13290 PF00012 Hsp70 protein BSQ33_13295 PF00226 DnaJ domain BSQ33_13295 PF01556 DnaJ C terminal domain BSQ33_13295 PF00684 DnaJ central domain BSQ33_13320 PF00756 Putative esterase BSQ33_13325 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_13325 PF00107 Zinc-binding dehydrogenase BSQ33_13330 PF03466 LysR substrate binding domain BSQ33_13330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_13335 PF14437 MafB19-like deaminase BSQ33_13340 PF01464 Transglycosylase SLT domain BSQ33_13340 PF00497 Bacterial extracellular solute-binding proteins, family 3 BSQ33_13345 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BSQ33_13345 PF02769 AIR synthase related protein, C-terminal domain BSQ33_13345 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BSQ33_13350 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BSQ33_13350 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BSQ33_13360 PF00141 Peroxidase BSQ33_13365 PF02743 Cache domain BSQ33_13365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_13365 PF00672 HAMP domain BSQ33_13380 PF06786 Uncharacterised protein family (UPF0253) BSQ33_13385 PF03129 Anticodon binding domain BSQ33_13385 PF04073 Aminoacyl-tRNA editing domain BSQ33_13385 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BSQ33_13390 PF18389 TrmO C-terminal domain BSQ33_13390 PF01980 tRNA-methyltransferase O BSQ33_13395 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BSQ33_13420 PF04287 tRNA pseudouridine synthase C BSQ33_13425 PF00849 RNA pseudouridylate synthase BSQ33_13430 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BSQ33_13430 PF02780 Transketolase, C-terminal domain BSQ33_13430 PF02779 Transketolase, pyrimidine binding domain BSQ33_13435 PF00348 Polyprenyl synthetase BSQ33_13440 PF02609 Exonuclease VII small subunit BSQ33_13445 PF01618 MotA/TolQ/ExbB proton channel family BSQ33_13450 PF00691 OmpA family BSQ33_13450 PF13677 Membrane MotB of proton-channel complex MotA/MotB BSQ33_13455 PF00248 Aldo/keto reductase family BSQ33_13460 PF02568 Thiamine biosynthesis protein (ThiI) BSQ33_13460 PF02926 THUMP domain BSQ33_13465 PF03466 LysR substrate binding domain BSQ33_13465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_13480 PF18125 RlmM ferredoxin-like domain BSQ33_13480 PF01728 FtsJ-like methyltransferase BSQ33_13485 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BSQ33_13485 PF01367 5'-3' exonuclease, C-terminal SAM fold BSQ33_13490 PF11892 Domain of unknown function (DUF3412) BSQ33_13490 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BSQ33_13490 PF03641 Possible lysine decarboxylase BSQ33_13505 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BSQ33_13505 PF14489 QueF-like protein BSQ33_13510 PF07348 Syd protein (SUKH-2) BSQ33_13515 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) BSQ33_13520 PF03180 NLPA lipoprotein BSQ33_13525 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_13530 PF00005 ABC transporter BSQ33_13530 PF09383 NIL domain BSQ33_13540 PF00356 Bacterial regulatory proteins, lacI family BSQ33_13545 PF02378 Phosphotransferase system, EIIC BSQ33_13545 PF00367 phosphotransferase system, EIIB BSQ33_13550 PF00128 Alpha amylase, catalytic domain BSQ33_13550 PF16657 Maltogenic Amylase, C-terminal domain BSQ33_13565 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BSQ33_13565 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BSQ33_13570 PF00464 Serine hydroxymethyltransferase BSQ33_13580 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BSQ33_13580 PF04055 Radical SAM superfamily BSQ33_13585 PF03099 Biotin/lipoate A/B protein ligase family BSQ33_13590 PF04359 Protein of unknown function (DUF493) BSQ33_13595 PF17149 Periplasmic sensor domain found in signal transduction proteins BSQ33_13595 PF00072 Response regulator receiver domain BSQ33_13595 PF01627 Hpt domain BSQ33_13595 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_13595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_13595 PF00672 HAMP domain BSQ33_13600 PF00768 D-alanyl-D-alanine carboxypeptidase BSQ33_13600 PF07943 Penicillin-binding protein 5, C-terminal domain BSQ33_13605 PF03330 Lytic transglycolase BSQ33_13605 PF05036 Sporulation related domain BSQ33_13610 PF01098 Cell cycle protein BSQ33_13615 PF03717 Penicillin-binding Protein dimerisation domain BSQ33_13615 PF00905 Penicillin binding protein transpeptidase domain BSQ33_13620 PF02590 Predicted SPOUT methyltransferase BSQ33_13630 PF14840 Processivity clamp loader gamma complex DNA pol III C-term BSQ33_13630 PF06144 DNA polymerase III, delta subunit BSQ33_13635 PF04390 Lipopolysaccharide-assembly BSQ33_13640 PF08264 Anticodon-binding domain of tRNA BSQ33_13640 PF00133 tRNA synthetases class I (I, L, M and V) BSQ33_13640 PF13603 Leucyl-tRNA synthetase, Domain 2 BSQ33_13650 PF00795 Carbon-nitrogen hydrolase BSQ33_13655 PF03471 Transporter associated domain BSQ33_13655 PF00571 CBS domain BSQ33_13660 PF02130 Uncharacterized protein family UPF0054 BSQ33_13665 PF02562 PhoH-like protein BSQ33_13670 PF04055 Radical SAM superfamily BSQ33_13670 PF00919 Uncharacterized protein family UPF0004 BSQ33_13670 PF01938 TRAM domain BSQ33_13675 PF01494 FAD binding domain BSQ33_13680 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BSQ33_13685 PF02896 PEP-utilising enzyme, TIM barrel domain BSQ33_13685 PF05524 PEP-utilising enzyme, N-terminal BSQ33_13685 PF00391 PEP-utilising enzyme, mobile domain BSQ33_13690 PF00381 PTS HPr component phosphorylation site BSQ33_13695 PF00291 Pyridoxal-phosphate dependent enzyme BSQ33_13705 PF04354 ZipA, C-terminal FtsZ-binding domain BSQ33_13710 PF00533 BRCA1 C Terminus (BRCT) domain BSQ33_13710 PF03120 NAD-dependent DNA ligase OB-fold domain BSQ33_13710 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BSQ33_13710 PF12826 Helix-hairpin-helix motif BSQ33_13710 PF01653 NAD-dependent DNA ligase adenylation domain BSQ33_13715 PF13411 MerR HTH family regulatory protein BSQ33_13720 PF00085 Thioredoxin BSQ33_13725 PF00106 short chain dehydrogenase BSQ33_13730 PF01370 NAD dependent epimerase/dehydratase family BSQ33_13730 PF08338 Domain of unknown function (DUF1731) BSQ33_13735 PF07556 Protein of unknown function (DUF1538) BSQ33_13740 PF07556 Protein of unknown function (DUF1538) BSQ33_13760 PF17323 Trans-membrane regulatory protein ToxS BSQ33_13765 PF00486 Transcriptional regulatory protein, C terminal BSQ33_13770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_13770 PF00183 Hsp90 protein BSQ33_13775 PF05191 Adenylate kinase, active site lid BSQ33_13780 PF00762 Ferrochelatase BSQ33_13785 PF02357 Transcription termination factor nusG BSQ33_13790 PF00733 Asparagine synthase BSQ33_13790 PF13537 Glutamine amidotransferase domain BSQ33_13795 PF01047 MarR family BSQ33_13795 PF00480 ROK family BSQ33_13800 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BSQ33_13800 PF00749 tRNA synthetases class I (E and Q), catalytic domain BSQ33_13810 PF01416 tRNA pseudouridine synthase BSQ33_13815 PF01039 Carboxyl transferase domain BSQ33_13815 PF17848 Acetyl-coA carboxylase zinc finger domain BSQ33_13820 PF02875 Mur ligase family, glutamate ligase domain BSQ33_13820 PF08245 Mur ligase middle domain BSQ33_13825 PF05036 Sporulation related domain BSQ33_13830 PF02674 Colicin V production protein BSQ33_13835 PF00156 Phosphoribosyl transferase domain BSQ33_13840 PF13726 Na+-H+ antiporter family BSQ33_13840 PF03553 Na+/H+ antiporter family BSQ33_13845 PF00929 Exonuclease BSQ33_13850 PF00691 OmpA family BSQ33_13850 PF18393 MotY N-terminal domain BSQ33_13855 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BSQ33_13860 PF07729 FCD domain BSQ33_13860 PF00392 Bacterial regulatory proteins, gntR family BSQ33_13865 PF00730 HhH-GPD superfamily base excision DNA repair protein BSQ33_13865 PF00633 Helix-hairpin-helix motif BSQ33_13865 PF10576 Iron-sulfur binding domain of endonuclease III BSQ33_13870 PF02508 Rnf-Nqr subunit, membrane protein BSQ33_13875 PF04205 FMN-binding domain BSQ33_13880 PF03116 NQR2, RnfD, RnfE family BSQ33_13885 PF12838 4Fe-4S dicluster domain BSQ33_13885 PF13375 RnfC Barrel sandwich hybrid domain BSQ33_13885 PF10531 SLBB domain BSQ33_13885 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BSQ33_13890 PF04060 Putative Fe-S cluster BSQ33_13895 PF02508 Rnf-Nqr subunit, membrane protein BSQ33_13905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BSQ33_13905 PF00205 Thiamine pyrophosphate enzyme, central domain BSQ33_13905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BSQ33_13910 PF03306 Alpha-acetolactate decarboxylase BSQ33_13915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_13915 PF03466 LysR substrate binding domain BSQ33_13930 PF17757 UvrB interaction domain BSQ33_13930 PF12344 Ultra-violet resistance protein B BSQ33_13930 PF02151 UvrB/uvrC motif BSQ33_13930 PF00271 Helicase conserved C-terminal domain BSQ33_13930 PF04851 Type III restriction enzyme, res subunit BSQ33_13935 PF02954 Bacterial regulatory protein, Fis family BSQ33_13935 PF00072 Response regulator receiver domain BSQ33_13935 PF00158 Sigma-54 interaction domain BSQ33_13940 PF01627 Hpt domain BSQ33_13945 PF01933 Uncharacterised protein family UPF0052 BSQ33_13950 PF06463 Molybdenum Cofactor Synthesis C BSQ33_13950 PF04055 Radical SAM superfamily BSQ33_13955 PF00994 Probable molybdopterin binding domain BSQ33_13960 PF01967 MoaC family BSQ33_13965 PF02597 ThiS family BSQ33_13970 PF02391 MoaE protein BSQ33_13980 PF01048 Phosphorylase superfamily BSQ33_13990 PF09334 tRNA synthetases class I (M) BSQ33_13990 PF01588 Putative tRNA binding domain BSQ33_13995 PF10609 NUBPL iron-transfer P-loop NTPase BSQ33_14000 PF00485 Phosphoribulokinase / Uridine kinase family BSQ33_14010 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BSQ33_14015 PF01451 Low molecular weight phosphotyrosine protein phosphatase BSQ33_14020 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BSQ33_14025 PF02803 Thiolase, C-terminal domain BSQ33_14025 PF00108 Thiolase, N-terminal domain BSQ33_14030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BSQ33_14030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BSQ33_14030 PF00378 Enoyl-CoA hydratase/isomerase BSQ33_14035 PF00881 Nitroreductase family BSQ33_14040 PF03466 LysR substrate binding domain BSQ33_14040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_14045 PF00072 Response regulator receiver domain BSQ33_14050 PF00156 Phosphoribosyl transferase domain BSQ33_14055 PF12169 DNA polymerase III subunits gamma and tau domain III BSQ33_14055 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BSQ33_14055 PF12170 DNA polymerase III tau subunit V interacting with alpha BSQ33_14060 PF02575 YbaB/EbfC DNA-binding family BSQ33_14070 PF03692 Putative zinc- or iron-chelating domain BSQ33_14075 PF03692 Putative zinc- or iron-chelating domain BSQ33_14105 PF00665 Integrase core domain BSQ33_14105 PF13333 Integrase core domain BSQ33_14105 PF13276 HTH-like domain BSQ33_14125 PF11893 Domain of unknown function (DUF3413) BSQ33_14125 PF00884 Sulfatase BSQ33_14130 PF07208 Protein of unknown function (DUF1414) BSQ33_14135 PF04245 37-kD nucleoid-associated bacterial protein BSQ33_14140 PF03502 Nucleoside-specific channel-forming protein, Tsx BSQ33_14150 PF01118 Semialdehyde dehydrogenase, NAD binding domain BSQ33_14150 PF02774 Semialdehyde dehydrogenase, dimerisation domain BSQ33_14155 PF00520 Ion transport protein BSQ33_14155 PF00027 Cyclic nucleotide-binding domain BSQ33_14160 PF00465 Iron-containing alcohol dehydrogenase BSQ33_14160 PF00171 Aldehyde dehydrogenase family BSQ33_14165 PF01740 STAS domain BSQ33_14165 PF00916 Sulfate permease family BSQ33_14170 PF12111 Polyribonucleotide phosphorylase C terminal BSQ33_14170 PF10150 Ribonuclease E/G family BSQ33_14170 PF00575 S1 RNA binding domain BSQ33_14175 PF01479 S4 domain BSQ33_14175 PF00849 RNA pseudouridylate synthase BSQ33_14180 PF02545 Maf-like protein BSQ33_14185 PF02620 Large ribosomal RNA subunit accumulation protein YceD BSQ33_14190 PF01783 Ribosomal L32p protein family BSQ33_14195 PF02504 Fatty acid synthesis protein BSQ33_14200 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BSQ33_14200 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BSQ33_14205 PF00698 Acyl transferase domain BSQ33_14215 PF00550 Phosphopantetheine attachment site BSQ33_14220 PF00109 Beta-ketoacyl synthase, N-terminal domain BSQ33_14220 PF02801 Beta-ketoacyl synthase, C-terminal domain BSQ33_14225 PF01063 Amino-transferase class IV BSQ33_14230 PF02618 YceG-like family BSQ33_14235 PF02223 Thymidylate kinase BSQ33_14240 PF09115 DNA polymerase III, delta subunit, C terminal BSQ33_14245 PF01026 TatD related DNase BSQ33_14250 PF00367 phosphotransferase system, EIIB BSQ33_14250 PF02378 Phosphotransferase system, EIIC BSQ33_14260 PF00209 Sodium:neurotransmitter symporter family BSQ33_14265 PF01734 Patatin-like phospholipase BSQ33_14270 PF02887 Pyruvate kinase, alpha/beta domain BSQ33_14270 PF00224 Pyruvate kinase, barrel domain BSQ33_14275 PF00480 ROK family BSQ33_14280 PF01584 CheW-like domain BSQ33_14280 PF00072 Response regulator receiver domain BSQ33_14285 PF00106 short chain dehydrogenase BSQ33_14290 PF08496 Peptidase family S49 N-terminal BSQ33_14290 PF01343 Peptidase family S49 BSQ33_14310 PF13411 MerR HTH family regulatory protein BSQ33_14315 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BSQ33_14320 PF13609 Gram-negative porin BSQ33_14330 PF00544 Pectate lyase BSQ33_14340 PF07690 Major Facilitator Superfamily BSQ33_14350 PF08220 DeoR-like helix-turn-helix domain BSQ33_14350 PF00455 DeoR C terminal sensor domain BSQ33_14355 PF01266 FAD dependent oxidoreductase BSQ33_14355 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BSQ33_14360 PF03707 Bacterial signalling protein N terminal repeat BSQ33_14360 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_14360 PF00563 EAL domain BSQ33_14365 PF08279 HTH domain BSQ33_14365 PF00072 Response regulator receiver domain BSQ33_14370 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BSQ33_14370 PF17203 Single cache domain 3 BSQ33_14370 PF00989 PAS fold BSQ33_14370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_14375 PF03605 Anaerobic c4-dicarboxylate membrane transporter BSQ33_14380 PF02313 Fumarate reductase subunit D BSQ33_14385 PF02300 Fumarate reductase subunit C BSQ33_14390 PF13085 2Fe-2S iron-sulfur cluster binding domain BSQ33_14390 PF13183 4Fe-4S dicluster domain BSQ33_14395 PF02910 Fumarate reductase flavoprotein C-term BSQ33_14395 PF00890 FAD binding domain BSQ33_14400 PF03390 2-hydroxycarboxylate transporter family BSQ33_14405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_14405 PF00672 HAMP domain BSQ33_14405 PF12729 Four helix bundle sensory module for signal transduction BSQ33_14415 PF00392 Bacterial regulatory proteins, gntR family BSQ33_14415 PF00155 Aminotransferase class I and II BSQ33_14420 PF00391 PEP-utilising enzyme, mobile domain BSQ33_14420 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BSQ33_14420 PF02896 PEP-utilising enzyme, TIM barrel domain BSQ33_14425 PF03618 Kinase/pyrophosphorylase BSQ33_14435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_14435 PF03466 LysR substrate binding domain BSQ33_14440 PF06958 S-type Pyocin BSQ33_14475 PF00474 Sodium:solute symporter family BSQ33_14485 PF13407 Periplasmic binding protein domain BSQ33_14490 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_14490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_14490 PF17149 Periplasmic sensor domain found in signal transduction proteins BSQ33_14490 PF00672 HAMP domain BSQ33_14490 PF01627 Hpt domain BSQ33_14490 PF00072 Response regulator receiver domain BSQ33_14495 PF00563 EAL domain BSQ33_14495 PF03707 Bacterial signalling protein N terminal repeat BSQ33_14495 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_14500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_14500 PF00672 HAMP domain BSQ33_14500 PF12729 Four helix bundle sensory module for signal transduction BSQ33_14510 PF13847 Methyltransferase domain BSQ33_14515 PF01263 Aldose 1-epimerase BSQ33_14520 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BSQ33_14520 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BSQ33_14525 PF01641 SelR domain BSQ33_14535 PF07023 Protein of unknown function (DUF1315) BSQ33_14540 PF17763 Glutaminase/Asparaginase C-terminal domain BSQ33_14540 PF00710 Asparaginase, N-terminal BSQ33_14545 PF01343 Peptidase family S49 BSQ33_14550 PF01842 ACT domain BSQ33_14550 PF00551 Formyl transferase BSQ33_14560 PF04851 Type III restriction enzyme, res subunit BSQ33_14560 PF13307 Helicase C-terminal domain BSQ33_14565 PF00814 Glycoprotease family BSQ33_14580 PF00561 alpha/beta hydrolase fold BSQ33_14585 PF00501 AMP-binding enzyme BSQ33_14585 PF13193 AMP-binding enzyme C-terminal domain BSQ33_14590 PF00570 HRDC domain BSQ33_14590 PF01612 3'-5' exonuclease BSQ33_14595 PF03776 Septum formation topological specificity factor MinE BSQ33_14600 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BSQ33_14605 PF05209 Septum formation inhibitor MinC, N-terminal domain BSQ33_14605 PF03775 Septum formation inhibitor MinC, C-terminal domain BSQ33_14610 PF05166 YcgL domain BSQ33_14615 PF13406 Transglycosylase SLT domain BSQ33_14635 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BSQ33_14655 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain BSQ33_14655 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain BSQ33_14655 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain BSQ33_14655 PF07703 Alpha-2-macroglobulin bait region domain BSQ33_14655 PF07678 A-macroglobulin TED domain BSQ33_14655 PF11974 Bacterial alpha-2-macroglobulin MG3 domain BSQ33_14655 PF17962 Bacterial macroglobulin domain 6 BSQ33_14655 PF00207 Alpha-2-macroglobulin family BSQ33_14655 PF01835 MG2 domain BSQ33_14660 PF00905 Penicillin binding protein transpeptidase domain BSQ33_14660 PF06832 Penicillin-Binding Protein C-terminus Family BSQ33_14660 PF00912 Transglycosylase BSQ33_14665 PF09905 DNA-binding protein VF530 BSQ33_14670 PF01810 LysE type translocator BSQ33_14675 PF07883 Cupin domain BSQ33_14700 PF00672 HAMP domain BSQ33_14700 PF12729 Four helix bundle sensory module for signal transduction BSQ33_14700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_14710 PF00497 Bacterial extracellular solute-binding proteins, family 3 BSQ33_14715 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BSQ33_14715 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BSQ33_14715 PF02805 Metal binding domain of Ada BSQ33_14715 PF12833 Helix-turn-helix domain BSQ33_14730 PF00480 ROK family BSQ33_14730 PF01047 MarR family BSQ33_14735 PF01979 Amidohydrolase family BSQ33_14740 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BSQ33_14745 PF02378 Phosphotransferase system, EIIC BSQ33_14745 PF00367 phosphotransferase system, EIIB BSQ33_14745 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BSQ33_14750 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BSQ33_14755 PF03480 Bacterial extracellular solute-binding protein, family 7 BSQ33_14760 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BSQ33_14765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BSQ33_14770 PF00574 Clp protease BSQ33_14775 PF00072 Response regulator receiver domain BSQ33_14775 PF00158 Sigma-54 interaction domain BSQ33_14775 PF02954 Bacterial regulatory protein, Fis family BSQ33_14780 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_14780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_14780 PF02743 Cache domain BSQ33_14785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BSQ33_14785 PF05697 Bacterial trigger factor protein (TF) BSQ33_14785 PF05698 Bacterial trigger factor protein (TF) C-terminus BSQ33_14790 PF00574 Clp protease BSQ33_14795 PF06689 ClpX C4-type zinc finger BSQ33_14795 PF10431 C-terminal, D2-small domain, of ClpB protein BSQ33_14795 PF07724 AAA domain (Cdc48 subfamily) BSQ33_14800 PF05362 Lon protease (S16) C-terminal proteolytic domain BSQ33_14800 PF02190 ATP-dependent protease La (LON) substrate-binding domain BSQ33_14800 PF00004 ATPase family associated with various cellular activities (AAA) BSQ33_14805 PF00216 Bacterial DNA-binding protein BSQ33_14810 PF13145 PPIC-type PPIASE domain BSQ33_14820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_14820 PF00072 Response regulator receiver domain BSQ33_14835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_14835 PF00072 Response regulator receiver domain BSQ33_14840 PF02224 Cytidylate kinase BSQ33_14845 PF00575 S1 RNA binding domain BSQ33_14855 PF06305 Lipopolysaccharide assembly protein A domain BSQ33_14860 PF18073 Rubredoxin metal binding domain BSQ33_14865 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BSQ33_14870 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) BSQ33_14880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_14880 PF03466 LysR substrate binding domain BSQ33_14890 PF01037 Lrp/AsnC ligand binding domain BSQ33_14895 PF17854 FtsK alpha domain BSQ33_14895 PF09397 Ftsk gamma domain BSQ33_14895 PF01580 FtsK/SpoIIIE family BSQ33_14895 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BSQ33_14900 PF02600 Disulfide bond formation protein DsbB BSQ33_14905 PF06450 Bacterial Na+/H+ antiporter B (NhaB) BSQ33_14910 PF07840 FadR C-terminal domain BSQ33_14910 PF00392 Bacterial regulatory proteins, gntR family BSQ33_14920 PF01230 HIT domain BSQ33_14935 PF08139 Prokaryotic membrane lipoprotein lipid attachment site BSQ33_14935 PF13036 Peptidoglycan-synthase activator LpoB BSQ33_14950 PF07992 Pyridine nucleotide-disulphide oxidoreductase BSQ33_14955 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_14965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BSQ33_14965 PF00005 ABC transporter BSQ33_14980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BSQ33_14990 PF00196 Bacterial regulatory proteins, luxR family BSQ33_14990 PF00072 Response regulator receiver domain BSQ33_15000 PF00271 Helicase conserved C-terminal domain BSQ33_15000 PF00270 DEAD/DEAH box helicase BSQ33_15000 PF03461 TRCF domain BSQ33_15000 PF17757 UvrB interaction domain BSQ33_15000 PF02559 CarD-like/TRCF domain BSQ33_15010 PF12704 MacB-like periplasmic core domain BSQ33_15010 PF02687 FtsX-like permease family BSQ33_15015 PF00005 ABC transporter BSQ33_15020 PF12704 MacB-like periplasmic core domain BSQ33_15020 PF02687 FtsX-like permease family BSQ33_15030 PF13567 Domain of unknown function (DUF4131) BSQ33_15030 PF03772 Competence protein BSQ33_15030 PF00753 Metallo-beta-lactamase superfamily BSQ33_15035 PF00664 ABC transporter transmembrane region BSQ33_15035 PF00005 ABC transporter BSQ33_15040 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BSQ33_15045 PF03966 Trm112p-like protein BSQ33_15050 PF02348 Cytidylyltransferase BSQ33_15055 PF04293 SpoVR like protein BSQ33_15060 PF04285 Protein of unknown function (DUF444) BSQ33_15065 PF08298 PrkA AAA domain BSQ33_15065 PF06798 PrkA serine protein kinase C-terminal domain BSQ33_15070 PF03887 YfbU domain BSQ33_15075 PF04055 Radical SAM superfamily BSQ33_15080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_15080 PF00672 HAMP domain BSQ33_15085 PF02901 Pyruvate formate lyase-like BSQ33_15085 PF01228 Glycine radical BSQ33_15090 PF03372 Endonuclease/Exonuclease/phosphatase family BSQ33_15095 PF10689 Protein of unknown function (DUF2496) BSQ33_15100 PF07445 Primosomal replication protein priC BSQ33_15105 PF01925 Sulfite exporter TauE/SafE BSQ33_15110 PF13307 Helicase C-terminal domain BSQ33_15110 PF06733 DEAD_2 BSQ33_15115 PF13609 Gram-negative porin BSQ33_15120 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BSQ33_15125 PF02810 SEC-C motif BSQ33_15135 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BSQ33_15140 PF09190 DALR domain BSQ33_15140 PF01406 tRNA synthetases class I (C) catalytic domain BSQ33_15145 PF02075 Crossover junction endodeoxyribonuclease RuvC BSQ33_15150 PF01330 RuvA N terminal domain BSQ33_15150 PF07499 RuvA, C-terminal domain BSQ33_15155 PF05491 RuvB C-terminal winged helix domain BSQ33_15155 PF17864 RuvB AAA lid domain BSQ33_15155 PF05496 Holliday junction DNA helicase RuvB P-loop domain BSQ33_15160 PF01654 Cytochrome bd terminal oxidase subunit I BSQ33_15165 PF02322 Cytochrome bd terminal oxidase subunit II BSQ33_15170 PF08173 Membrane bound YbgT-like protein BSQ33_15175 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) BSQ33_15180 PF03061 Thioesterase superfamily BSQ33_15185 PF01618 MotA/TolQ/ExbB proton channel family BSQ33_15190 PF02472 Biopolymer transport protein ExbD/TolR BSQ33_15205 PF00691 OmpA family BSQ33_15210 PF13174 Tetratricopeptide repeat BSQ33_15210 PF16331 TolA binding protein trimerisation BSQ33_15215 PF02445 Quinolinate synthetase A protein BSQ33_15225 PF06610 L-alanine exporter BSQ33_15250 PF03466 LysR substrate binding domain BSQ33_15250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_15255 PF00107 Zinc-binding dehydrogenase BSQ33_15255 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_15260 PF00890 FAD binding domain BSQ33_15260 PF04205 FMN-binding domain BSQ33_15260 PF03358 NADPH-dependent FMN reductase BSQ33_15265 PF02424 ApbE family BSQ33_15270 PF07690 Major Facilitator Superfamily BSQ33_15275 PF17203 Single cache domain 3 BSQ33_15275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_15280 PF00939 Sodium:sulfate symporter transmembrane region BSQ33_15285 PF00072 Response regulator receiver domain BSQ33_15285 PF12431 Transcriptional regulator BSQ33_15290 PF04303 PrpF protein BSQ33_15295 PF00330 Aconitase family (aconitate hydratase) BSQ33_15295 PF06434 Aconitate hydratase 2 N-terminus BSQ33_15295 PF11791 Aconitate B N-terminal domain BSQ33_15300 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BSQ33_15320 PF00176 SNF2 family N-terminal domain BSQ33_15320 PF00271 Helicase conserved C-terminal domain BSQ33_15320 PF12419 SNF2 Helicase protein BSQ33_15325 PF07715 TonB-dependent Receptor Plug Domain BSQ33_15330 PF00756 Putative esterase BSQ33_15330 PF11806 Domain of unknown function (DUF3327) BSQ33_15340 PF00668 Condensation domain BSQ33_15340 PF13193 AMP-binding enzyme C-terminal domain BSQ33_15340 PF00550 Phosphopantetheine attachment site BSQ33_15340 PF00501 AMP-binding enzyme BSQ33_15345 PF00005 ABC transporter BSQ33_15350 PF01032 FecCD transport family BSQ33_15355 PF01032 FecCD transport family BSQ33_15360 PF05977 Transmembrane secretion effector BSQ33_15365 PF01497 Periplasmic binding protein BSQ33_15370 PF00550 Phosphopantetheine attachment site BSQ33_15370 PF00857 Isochorismatase family BSQ33_15375 PF13193 AMP-binding enzyme C-terminal domain BSQ33_15375 PF00501 AMP-binding enzyme BSQ33_15380 PF00425 chorismate binding enzyme BSQ33_15390 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BSQ33_15390 PF00356 Bacterial regulatory proteins, lacI family BSQ33_15395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BSQ33_15400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BSQ33_15405 PF03611 PTS system sugar-specific permease component BSQ33_15410 PF00089 Trypsin BSQ33_15420 PF02423 Ornithine cyclodeaminase/mu-crystallin family BSQ33_15430 PF16350 FAD dependent oxidoreductase central domain BSQ33_15430 PF01571 Aminomethyltransferase folate-binding domain BSQ33_15430 PF01266 FAD dependent oxidoreductase BSQ33_15430 PF08669 Glycine cleavage T-protein C-terminal barrel domain BSQ33_15445 PF04717 Type VI secretion system, phage-baseplate injector BSQ33_15445 PF16671 Actin cross-linking domain BSQ33_15465 PF04717 Type VI secretion system, phage-baseplate injector BSQ33_15465 PF16671 Actin cross-linking domain BSQ33_15530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_15530 PF03466 LysR substrate binding domain BSQ33_15535 PF02525 Flavodoxin-like fold BSQ33_15540 PF00149 Calcineurin-like phosphoesterase BSQ33_15545 PF08402 TOBE domain BSQ33_15545 PF00005 ABC transporter BSQ33_15565 PF00356 Bacterial regulatory proteins, lacI family BSQ33_15575 PF01551 Peptidase family M23 BSQ33_15575 PF04225 Opacity-associated protein A LysM-like domain BSQ33_15585 PF02001 Protein of unknown function DUF134 BSQ33_15595 PF00664 ABC transporter transmembrane region BSQ33_15595 PF00005 ABC transporter BSQ33_15600 PF00005 ABC transporter BSQ33_15600 PF00664 ABC transporter transmembrane region BSQ33_15605 PF02424 ApbE family BSQ33_15610 PF02254 TrkA-N domain BSQ33_15610 PF02080 TrkA-C domain BSQ33_15615 PF02386 Cation transport protein BSQ33_15625 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BSQ33_15625 PF12241 Trans-2-enoyl-CoA reductase catalytic region BSQ33_15625 PF07055 Enoyl reductase FAD binding domain BSQ33_15630 PF06826 Predicted Permease Membrane Region BSQ33_15630 PF02080 TrkA-C domain BSQ33_15635 PF00462 Glutaredoxin BSQ33_15640 PF01380 SIS domain BSQ33_15640 PF01418 Helix-turn-helix domain, rpiR family BSQ33_15645 PF00282 Pyridoxal-dependent decarboxylase conserved domain BSQ33_15655 PF04994 TfoX C-terminal domain BSQ33_15655 PF04993 TfoX N-terminal domain BSQ33_15670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_15670 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_15680 PF00266 Aminotransferase class-V BSQ33_15685 PF04055 Radical SAM superfamily BSQ33_15685 PF11842 Domain of unknown function (DUF3362) BSQ33_15685 PF08497 Radical SAM N-terminal BSQ33_15700 PF01037 Lrp/AsnC ligand binding domain BSQ33_15705 PF01053 Cys/Met metabolism PLP-dependent enzyme BSQ33_15710 PF00497 Bacterial extracellular solute-binding proteins, family 3 BSQ33_15715 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_15720 PF00005 ABC transporter BSQ33_15725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_15725 PF03466 LysR substrate binding domain BSQ33_15735 PF03795 YCII-related domain BSQ33_15740 PF03061 Thioesterase superfamily BSQ33_15750 PF00375 Sodium:dicarboxylate symporter family BSQ33_15755 PF00290 Tryptophan synthase alpha chain BSQ33_15760 PF00291 Pyridoxal-phosphate dependent enzyme BSQ33_15765 PF00218 Indole-3-glycerol phosphate synthase BSQ33_15765 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BSQ33_15770 PF00270 DEAD/DEAH box helicase BSQ33_15770 PF00271 Helicase conserved C-terminal domain BSQ33_15775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_15775 PF00672 HAMP domain BSQ33_15775 PF17200 Single Cache domain 2 BSQ33_15780 PF12849 PBP superfamily domain BSQ33_15785 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_15790 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_15795 PF00005 ABC transporter BSQ33_15800 PF04973 Nicotinamide mononucleotide transporter BSQ33_15805 PF01048 Phosphorylase superfamily BSQ33_15825 PF08525 Opacity-associated protein A N-terminal motif BSQ33_15825 PF01551 Peptidase family M23 BSQ33_15825 PF01476 LysM domain BSQ33_15830 PF08448 PAS fold BSQ33_15830 PF08447 PAS fold BSQ33_15830 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_15830 PF00563 EAL domain BSQ33_15840 PF13609 Gram-negative porin BSQ33_15845 PF04336 Acyl carrier protein phosphodiesterase BSQ33_15850 PF07690 Major Facilitator Superfamily BSQ33_15860 PF00248 Aldo/keto reductase family BSQ33_15865 PF03466 LysR substrate binding domain BSQ33_15865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_15870 PF13302 Acetyltransferase (GNAT) domain BSQ33_15890 PF01557 Fumarylacetoacetate (FAA) hydrolase family BSQ33_15895 PF03600 Citrate transporter BSQ33_15900 PF01810 LysE type translocator BSQ33_15910 PF02378 Phosphotransferase system, EIIC BSQ33_15910 PF00367 phosphotransferase system, EIIB BSQ33_15910 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BSQ33_15915 PF00367 phosphotransferase system, EIIB BSQ33_15915 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BSQ33_15915 PF02378 Phosphotransferase system, EIIC BSQ33_15920 PF03123 CAT RNA binding domain BSQ33_15920 PF00874 PRD domain BSQ33_15925 PF00232 Glycosyl hydrolase family 1 BSQ33_15945 PF01914 MarC family integral membrane protein BSQ33_15955 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BSQ33_15955 PF00703 Glycosyl hydrolases family 2 BSQ33_15955 PF02837 Glycosyl hydrolases family 2, sugar binding domain BSQ33_15960 PF03573 outer membrane porin, OprD family BSQ33_15965 PF02378 Phosphotransferase system, EIIC BSQ33_15970 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BSQ33_15975 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BSQ33_15980 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BSQ33_15980 PF00874 PRD domain BSQ33_15980 PF05043 Mga helix-turn-helix domain BSQ33_15980 PF08279 HTH domain BSQ33_15985 PF00465 Iron-containing alcohol dehydrogenase BSQ33_16000 PF02028 BCCT, betaine/carnitine/choline family transporter BSQ33_16005 PF00582 Universal stress protein family BSQ33_16010 PF03601 Conserved hypothetical protein 698 BSQ33_16020 PF01554 MatE BSQ33_16035 PF00970 Oxidoreductase FAD-binding domain BSQ33_16035 PF00111 2Fe-2S iron-sulfur cluster binding domain BSQ33_16035 PF00175 Oxidoreductase NAD-binding domain BSQ33_16050 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BSQ33_16050 PF00072 Response regulator receiver domain BSQ33_16050 PF01627 Hpt domain BSQ33_16050 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_16050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_16050 PF00672 HAMP domain BSQ33_16055 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BSQ33_16065 PF02566 OsmC-like protein BSQ33_16070 PF02311 AraC-like ligand binding domain BSQ33_16070 PF12833 Helix-turn-helix domain BSQ33_16075 PF05661 Protein of unknown function (DUF808) BSQ33_16105 PF00158 Sigma-54 interaction domain BSQ33_16105 PF02954 Bacterial regulatory protein, Fis family BSQ33_16105 PF00072 Response regulator receiver domain BSQ33_16220 PF01979 Amidohydrolase family BSQ33_16225 PF00111 2Fe-2S iron-sulfur cluster binding domain BSQ33_16225 PF03473 MOSC domain BSQ33_16225 PF03476 MOSC N-terminal beta barrel domain BSQ33_16225 PF03473 MOSC domain BSQ33_16225 PF00111 2Fe-2S iron-sulfur cluster binding domain BSQ33_16225 PF03476 MOSC N-terminal beta barrel domain BSQ33_16255 PF00672 HAMP domain BSQ33_16255 PF02743 Cache domain BSQ33_16255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_16260 PF02219 Methylenetetrahydrofolate reductase BSQ33_16260 PF02574 Homocysteine S-methyltransferase BSQ33_16270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_16270 PF00672 HAMP domain BSQ33_16270 PF16591 Helical bimodular sensor domain BSQ33_16295 PF01809 Putative membrane protein insertion efficiency factor BSQ33_16340 PF13673 Acetyltransferase (GNAT) domain BSQ33_16355 PF18030 RimK PreATP-grasp domain BSQ33_16355 PF02080 TrkA-C domain BSQ33_16355 PF08443 RimK-like ATP-grasp domain BSQ33_16360 PF00583 Acetyltransferase (GNAT) family BSQ33_16370 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BSQ33_16370 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BSQ33_16375 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BSQ33_16380 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BSQ33_16380 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BSQ33_16385 PF00072 Response regulator receiver domain BSQ33_16400 PF04400 (Na+)-NQR maturation NqrM BSQ33_16405 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BSQ33_16405 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BSQ33_16415 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_16415 PF00107 Zinc-binding dehydrogenase BSQ33_16420 PF03330 Lytic transglycolase BSQ33_16425 PF04958 Arginine N-succinyltransferase beta subunit BSQ33_16430 PF04958 Arginine N-succinyltransferase beta subunit BSQ33_16435 PF00171 Aldehyde dehydrogenase family BSQ33_16440 PF04996 Succinylarginine dihydrolase BSQ33_16445 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BSQ33_16450 PF17158 Membrane-associated sensor, integral membrane domain BSQ33_16450 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_16455 PF00989 PAS fold BSQ33_16455 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_16455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_16455 PF13426 PAS domain BSQ33_16455 PF13188 PAS domain BSQ33_16465 PF01145 SPFH domain / Band 7 family BSQ33_16485 PF10688 Bacterial inner membrane protein BSQ33_16490 PF00529 HlyD membrane-fusion protein of T1SS BSQ33_16490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BSQ33_16495 PF00873 AcrB/AcrD/AcrF family BSQ33_16500 PF00155 Aminotransferase class I and II BSQ33_16505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_16505 PF00072 Response regulator receiver domain BSQ33_16515 PF02347 Glycine cleavage system P-protein BSQ33_16520 PF01597 Glycine cleavage H-protein BSQ33_16530 PF08669 Glycine cleavage T-protein C-terminal barrel domain BSQ33_16530 PF01571 Aminomethyltransferase folate-binding domain BSQ33_16535 PF13188 PAS domain BSQ33_16535 PF03707 Bacterial signalling protein N terminal repeat BSQ33_16535 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_16535 PF00563 EAL domain BSQ33_16550 PF00871 Acetokinase family BSQ33_16555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_16555 PF12729 Four helix bundle sensory module for signal transduction BSQ33_16555 PF00672 HAMP domain BSQ33_16560 PF00356 Bacterial regulatory proteins, lacI family BSQ33_16570 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_16575 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_16580 PF00232 Glycosyl hydrolase family 1 BSQ33_16585 PF08402 TOBE domain BSQ33_16585 PF00005 ABC transporter BSQ33_16590 PF06165 Glycosyltransferase family 36 BSQ33_16590 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BSQ33_16600 PF00356 Bacterial regulatory proteins, lacI family BSQ33_16610 PF00722 Glycosyl hydrolases family 16 BSQ33_16630 PF00684 DnaJ central domain BSQ33_16630 PF01556 DnaJ C terminal domain BSQ33_16630 PF00226 DnaJ domain BSQ33_16635 PF03707 Bacterial signalling protein N terminal repeat BSQ33_16635 PF00563 EAL domain BSQ33_16635 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_16640 PF12241 Trans-2-enoyl-CoA reductase catalytic region BSQ33_16640 PF07055 Enoyl reductase FAD binding domain BSQ33_16640 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BSQ33_16645 PF13472 GDSL-like Lipase/Acylhydrolase family BSQ33_16650 PF00005 ABC transporter BSQ33_16660 PF01914 MarC family integral membrane protein BSQ33_16670 PF01177 Asp/Glu/Hydantoin racemase BSQ33_16690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BSQ33_16690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BSQ33_16705 PF01494 FAD binding domain BSQ33_16710 PF16363 GDP-mannose 4,6 dehydratase BSQ33_16715 PF00440 Bacterial regulatory proteins, tetR family BSQ33_16725 PF17868 AAA lid domain BSQ33_16725 PF12592 Protein of unknown function (DUF3763) BSQ33_16725 PF07728 AAA domain (dynein-related subfamily) BSQ33_16730 PF05762 VWA domain containing CoxE-like protein BSQ33_16735 PF06629 MltA-interacting protein MipA BSQ33_16740 PF01184 GPR1/FUN34/yaaH family BSQ33_16745 PF02798 Glutathione S-transferase, N-terminal domain BSQ33_16765 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BSQ33_16765 PF07685 CobB/CobQ-like glutamine amidotransferase domain BSQ33_16770 PF03186 CobD/Cbib protein BSQ33_16775 PF00293 NUDIX domain BSQ33_16780 PF08534 Redoxin BSQ33_16785 PF04363 Protein of unknown function (DUF496) BSQ33_16795 PF04337 Protein of unknown function, DUF480 BSQ33_16800 PF01541 GIY-YIG catalytic domain BSQ33_16810 PF13407 Periplasmic binding protein domain BSQ33_16815 PF09308 LuxQ, periplasmic BSQ33_16815 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_16815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_16815 PF00072 Response regulator receiver domain BSQ33_16825 PF07685 CobB/CobQ-like glutamine amidotransferase domain BSQ33_16825 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BSQ33_16840 PF12805 FUSC-like inner membrane protein yccS BSQ33_16845 PF00580 UvrD/REP helicase N-terminal domain BSQ33_16845 PF12462 DNA helicase IV / RNA helicase N terminal BSQ33_16845 PF13361 UvrD-like helicase C-terminal domain BSQ33_16850 PF02142 MGS-like domain BSQ33_16855 PF00483 Nucleotidyl transferase BSQ33_16865 PF00106 short chain dehydrogenase BSQ33_16870 PF00108 Thiolase, N-terminal domain BSQ33_16870 PF02803 Thiolase, C-terminal domain BSQ33_16880 PF00561 alpha/beta hydrolase fold BSQ33_16880 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus BSQ33_16885 PF01926 50S ribosome-binding GTPase BSQ33_16890 PF02492 CobW/HypB/UreG, nucleotide-binding domain BSQ33_16890 PF07683 Cobalamin synthesis protein cobW C-terminal domain BSQ33_16895 PF00654 Voltage gated chloride channel BSQ33_16900 PF12849 PBP superfamily domain BSQ33_16910 PF00773 RNB domain BSQ33_16910 PF08206 Ribonuclease B OB domain BSQ33_16910 PF00575 S1 RNA binding domain BSQ33_16915 PF03880 DbpA RNA binding domain BSQ33_16915 PF00270 DEAD/DEAH box helicase BSQ33_16915 PF00271 Helicase conserved C-terminal domain BSQ33_16920 PF00232 Glycosyl hydrolase family 1 BSQ33_16925 PF00155 Aminotransferase class I and II BSQ33_16930 PF00107 Zinc-binding dehydrogenase BSQ33_16930 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_16935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_16935 PF00672 HAMP domain BSQ33_16935 PF02743 Cache domain BSQ33_16940 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_16940 PF03707 Bacterial signalling protein N terminal repeat BSQ33_16940 PF00563 EAL domain BSQ33_16945 PF09297 NADH pyrophosphatase zinc ribbon domain BSQ33_16945 PF00293 NUDIX domain BSQ33_16950 PF00005 ABC transporter BSQ33_16950 PF12848 ABC transporter BSQ33_16950 PF16326 ABC transporter C-terminal domain BSQ33_16955 PF02525 Flavodoxin-like fold BSQ33_16960 PF13426 PAS domain BSQ33_16960 PF08447 PAS fold BSQ33_16960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_16965 PF00563 EAL domain BSQ33_16965 PF12792 CSS motif domain associated with EAL BSQ33_16990 PF17874 MalT-like TPR region BSQ33_16990 PF00196 Bacterial regulatory proteins, luxR family BSQ33_17000 PF04616 Glycosyl hydrolases family 43 BSQ33_17010 PF01867 CRISPR associated protein Cas1 BSQ33_17015 PF00795 Carbon-nitrogen hydrolase BSQ33_17015 PF00583 Acetyltransferase (GNAT) family BSQ33_17025 PF00271 Helicase conserved C-terminal domain BSQ33_17025 PF03880 DbpA RNA binding domain BSQ33_17025 PF00270 DEAD/DEAH box helicase BSQ33_17030 PF00271 Helicase conserved C-terminal domain BSQ33_17030 PF00270 DEAD/DEAH box helicase BSQ33_17045 PF00384 Molybdopterin oxidoreductase BSQ33_17050 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BSQ33_17050 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BSQ33_17050 PF07992 Pyridine nucleotide-disulphide oxidoreductase BSQ33_17060 PF07992 Pyridine nucleotide-disulphide oxidoreductase BSQ33_17060 PF13192 Thioredoxin domain BSQ33_17065 PF00578 AhpC/TSA family BSQ33_17065 PF10417 C-terminal domain of 1-Cys peroxiredoxin BSQ33_17070 PF00107 Zinc-binding dehydrogenase BSQ33_17070 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_17075 PF03825 Nucleoside H+ symporter BSQ33_17080 PF03747 ADP-ribosylglycohydrolase BSQ33_17085 PF00294 pfkB family carbohydrate kinase BSQ33_17090 PF07702 UTRA domain BSQ33_17090 PF00392 Bacterial regulatory proteins, gntR family BSQ33_17095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BSQ33_17095 PF07992 Pyridine nucleotide-disulphide oxidoreductase BSQ33_17110 PF00529 HlyD membrane-fusion protein of T1SS BSQ33_17110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BSQ33_17115 PF00873 AcrB/AcrD/AcrF family BSQ33_17120 PF03477 ATP cone domain BSQ33_17120 PF13597 Anaerobic ribonucleoside-triphosphate reductase BSQ33_17135 PF02321 Outer membrane efflux protein BSQ33_17140 PF00005 ABC transporter BSQ33_17140 PF12704 MacB-like periplasmic core domain BSQ33_17140 PF02687 FtsX-like permease family BSQ33_17145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BSQ33_17160 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BSQ33_17170 PF01979 Amidohydrolase family BSQ33_17175 PF00576 HIUase/Transthyretin family BSQ33_17195 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BSQ33_17195 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BSQ33_17195 PF00111 2Fe-2S iron-sulfur cluster binding domain BSQ33_17195 PF01799 [2Fe-2S] binding domain BSQ33_17200 PF02608 ABC transporter substrate-binding protein PnrA-like BSQ33_17215 PF00005 ABC transporter BSQ33_17220 PF00440 Bacterial regulatory proteins, tetR family BSQ33_17220 PF08362 YcdC-like protein, C-terminal region BSQ33_17225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_17225 PF17200 Single Cache domain 2 BSQ33_17225 PF00672 HAMP domain BSQ33_17235 PF13188 PAS domain BSQ33_17235 PF03707 Bacterial signalling protein N terminal repeat BSQ33_17235 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_17235 PF00563 EAL domain BSQ33_17245 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_17250 PF00005 ABC transporter BSQ33_17250 PF03459 TOBE domain BSQ33_17270 PF04023 FeoA domain BSQ33_17270 PF07664 Ferrous iron transport protein B C terminus BSQ33_17270 PF07670 Nucleoside recognition BSQ33_17270 PF17910 FeoB cytosolic helical domain BSQ33_17270 PF02421 Ferrous iron transport protein B BSQ33_17290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BSQ33_17290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BSQ33_17295 PF03737 Aldolase/RraA BSQ33_17300 PF00939 Sodium:sulfate symporter transmembrane region BSQ33_17305 PF01979 Amidohydrolase family BSQ33_17310 PF02954 Bacterial regulatory protein, Fis family BSQ33_17310 PF06506 Propionate catabolism activator BSQ33_17310 PF00158 Sigma-54 interaction domain BSQ33_17315 PF12833 Helix-turn-helix domain BSQ33_17320 PF16874 Glycosyl hydrolase family 36 C-terminal domain BSQ33_17320 PF16875 Glycosyl hydrolase family 36 N-terminal domain BSQ33_17325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BSQ33_17325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BSQ33_17325 PF02770 Acyl-CoA dehydrogenase, middle domain BSQ33_17330 PF01012 Electron transfer flavoprotein domain BSQ33_17335 PF01012 Electron transfer flavoprotein domain BSQ33_17335 PF00766 Electron transfer flavoprotein FAD-binding domain BSQ33_17350 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_17365 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BSQ33_17365 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BSQ33_17365 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BSQ33_17370 PF02233 NAD(P) transhydrogenase beta subunit BSQ33_17380 PF00486 Transcriptional regulatory protein, C terminal BSQ33_17380 PF00072 Response regulator receiver domain BSQ33_17400 PF00465 Iron-containing alcohol dehydrogenase BSQ33_17405 PF01253 Translation initiation factor SUI1 BSQ33_17420 PF07478 D-ala D-ala ligase C-terminus BSQ33_17420 PF01820 D-ala D-ala ligase N-terminus BSQ33_17430 PF13607 Succinyl-CoA ligase like flavodoxin domain BSQ33_17430 PF00583 Acetyltransferase (GNAT) family BSQ33_17430 PF13380 CoA binding domain BSQ33_17435 PF03466 LysR substrate binding domain BSQ33_17435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_17440 PF12793 Sugar transport-related sRNA regulator N-term BSQ33_17440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BSQ33_17445 PF03061 Thioesterase superfamily BSQ33_17450 PF08274 PhnA Zinc-Ribbon BSQ33_17450 PF03831 PhnA domain BSQ33_17460 PF00149 Calcineurin-like phosphoesterase BSQ33_17460 PF02872 5'-nucleotidase, C-terminal domain BSQ33_17465 PF11398 Protein of unknown function (DUF2813) BSQ33_17470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_17470 PF03466 LysR substrate binding domain BSQ33_17480 PF04264 YceI-like domain BSQ33_17485 PF01292 Prokaryotic cytochrome b561 BSQ33_17495 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BSQ33_17495 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BSQ33_17500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BSQ33_17500 PF00005 ABC transporter BSQ33_17505 PF12911 N-terminal TM domain of oligopeptide transport permease C BSQ33_17505 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_17510 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_17515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BSQ33_17520 PF00293 NUDIX domain BSQ33_17530 PF07702 UTRA domain BSQ33_17530 PF00392 Bacterial regulatory proteins, gntR family BSQ33_17535 PF13419 Haloacid dehalogenase-like hydrolase BSQ33_17540 PF03466 LysR substrate binding domain BSQ33_17540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_17550 PF01095 Pectinesterase BSQ33_17555 PF01227 GTP cyclohydrolase I BSQ33_17560 PF03454 MoeA C-terminal region (domain IV) BSQ33_17560 PF00994 Probable molybdopterin binding domain BSQ33_17560 PF03453 MoeA N-terminal region (domain I and II) BSQ33_17565 PF00899 ThiF family BSQ33_17570 PF00581 Rhodanese-like domain BSQ33_17580 PF00923 Transaldolase/Fructose-6-phosphate aldolase BSQ33_17585 PF00456 Transketolase, thiamine diphosphate binding domain BSQ33_17585 PF02780 Transketolase, C-terminal domain BSQ33_17585 PF02779 Transketolase, pyrimidine binding domain BSQ33_17595 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BSQ33_17595 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BSQ33_17600 PF13419 Haloacid dehalogenase-like hydrolase BSQ33_17620 PF01632 Ribosomal protein L35 BSQ33_17625 PF05198 Translation initiation factor IF-3, N-terminal domain BSQ33_17625 PF00707 Translation initiation factor IF-3, C-terminal domain BSQ33_17630 PF03129 Anticodon binding domain BSQ33_17630 PF02824 TGS domain BSQ33_17630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BSQ33_17630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BSQ33_17780 PF00717 Peptidase S24-like BSQ33_17780 PF01381 Helix-turn-helix BSQ33_17785 PF03605 Anaerobic c4-dicarboxylate membrane transporter BSQ33_17790 PF00291 Pyridoxal-phosphate dependent enzyme BSQ33_17795 PF01037 Lrp/AsnC ligand binding domain BSQ33_17805 PF01297 Zinc-uptake complex component A periplasmic BSQ33_17810 PF00005 ABC transporter BSQ33_17820 PF00950 ABC 3 transport family BSQ33_17825 PF02080 TrkA-C domain BSQ33_17825 PF06826 Predicted Permease Membrane Region BSQ33_17835 PF00356 Bacterial regulatory proteins, lacI family BSQ33_17840 PF00294 pfkB family carbohydrate kinase BSQ33_17845 PF13407 Periplasmic binding protein domain BSQ33_17850 PF02653 Branched-chain amino acid transport system / permease component BSQ33_17855 PF00005 ABC transporter BSQ33_17860 PF05025 RbsD / FucU transport protein family BSQ33_17870 PF01183 Glycosyl hydrolases family 25 BSQ33_17870 PF01471 Putative peptidoglycan binding domain BSQ33_17905 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) BSQ33_17910 PF01867 CRISPR associated protein Cas1 BSQ33_17920 PF09704 CRISPR-associated protein (Cas_Cas5) BSQ33_17940 PF00270 DEAD/DEAH box helicase BSQ33_17940 PF18019 HD domain BSQ33_17940 PF00271 Helicase conserved C-terminal domain BSQ33_17970 PF16671 Actin cross-linking domain BSQ33_17970 PF04717 Type VI secretion system, phage-baseplate injector BSQ33_17985 PF01970 Tripartite tricarboxylate transporter TctA family BSQ33_17995 PF04303 PrpF protein BSQ33_18005 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_18005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_18005 PF08521 Two-component sensor kinase N-terminal BSQ33_18010 PF00486 Transcriptional regulatory protein, C terminal BSQ33_18010 PF00072 Response regulator receiver domain BSQ33_18025 PF00356 Bacterial regulatory proteins, lacI family BSQ33_18025 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BSQ33_18035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BSQ33_18035 PF00381 PTS HPr component phosphorylation site BSQ33_18040 PF00294 pfkB family carbohydrate kinase BSQ33_18045 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BSQ33_18045 PF02378 Phosphotransferase system, EIIC BSQ33_18050 PF00553 Cellulose binding domain BSQ33_18050 PF03422 Carbohydrate binding module (family 6) BSQ33_18050 PF00331 Glycosyl hydrolase family 10 BSQ33_18060 PF02595 Glycerate kinase family BSQ33_18070 PF00440 Bacterial regulatory proteins, tetR family BSQ33_18070 PF02909 Tetracyclin repressor-like, C-terminal domain BSQ33_18075 PF07992 Pyridine nucleotide-disulphide oxidoreductase BSQ33_18075 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BSQ33_18080 PF00563 EAL domain BSQ33_18080 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_18080 PF03707 Bacterial signalling protein N terminal repeat BSQ33_18085 PF01590 GAF domain BSQ33_18085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_18085 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_18085 PF08446 PAS fold BSQ33_18085 PF00360 Phytochrome region BSQ33_18105 PF00150 Cellulase (glycosyl hydrolase family 5) BSQ33_18105 PF14600 Cellulose-binding domain BSQ33_18110 PF00854 POT family BSQ33_18115 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BSQ33_18115 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BSQ33_18120 PF12833 Helix-turn-helix domain BSQ33_18125 PF00083 Sugar (and other) transporter BSQ33_18135 PF01544 CorA-like Mg2+ transporter protein BSQ33_18170 PF01546 Peptidase family M20/M25/M40 BSQ33_18170 PF07687 Peptidase dimerisation domain BSQ33_18175 PF00266 Aminotransferase class-V BSQ33_18185 PF01425 Amidase BSQ33_18190 PF13593 SBF-like CPA transporter family (DUF4137) BSQ33_18195 PF01418 Helix-turn-helix domain, rpiR family BSQ33_18195 PF01380 SIS domain BSQ33_18200 PF00005 ABC transporter BSQ33_18205 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_18210 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_18215 PF00497 Bacterial extracellular solute-binding proteins, family 3 BSQ33_18220 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BSQ33_18235 PF00722 Glycosyl hydrolases family 16 BSQ33_18240 PF14310 Fibronectin type III-like domain BSQ33_18240 PF00933 Glycosyl hydrolase family 3 N terminal domain BSQ33_18240 PF01915 Glycosyl hydrolase family 3 C-terminal domain BSQ33_18260 PF00834 Ribulose-phosphate 3 epimerase family BSQ33_18270 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BSQ33_18285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BSQ33_18285 PF00874 PRD domain BSQ33_18285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BSQ33_18285 PF08279 HTH domain BSQ33_18285 PF05043 Mga helix-turn-helix domain BSQ33_18290 PF13091 PLD-like domain BSQ33_18290 PF13087 AAA domain BSQ33_18310 PF05860 haemagglutination activity domain BSQ33_18310 PF13332 Hemagglutinin repeat BSQ33_18310 PF04829 Pre-toxin domain with VENN motif BSQ33_18310 PF13018 Extended Signal Peptide of Type V secretion system BSQ33_18315 PF00149 Calcineurin-like phosphoesterase BSQ33_18315 PF12320 Type 5 capsule protein repressor C-terminal domain BSQ33_18320 PF13476 AAA domain BSQ33_18350 PF00583 Acetyltransferase (GNAT) family BSQ33_18355 PF00583 Acetyltransferase (GNAT) family BSQ33_18385 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BSQ33_18385 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BSQ33_18390 PF00916 Sulfate permease family BSQ33_18390 PF01740 STAS domain BSQ33_18400 PF00072 Response regulator receiver domain BSQ33_18400 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_18435 PF01263 Aldose 1-epimerase BSQ33_18440 PF10509 Galactokinase galactose-binding signature BSQ33_18440 PF00288 GHMP kinases N terminal domain BSQ33_18440 PF08544 GHMP kinases C terminal BSQ33_18445 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BSQ33_18445 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BSQ33_18455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BSQ33_18455 PF00529 HlyD membrane-fusion protein of T1SS BSQ33_18460 PF04632 Fusaric acid resistance protein family BSQ33_18470 PF00801 PKD domain BSQ33_18470 PF05547 Immune inhibitor A peptidase M6 BSQ33_18490 PF07722 Peptidase C26 BSQ33_18500 PF07274 Protein of unknown function (DUF1440) BSQ33_18505 PF00171 Aldehyde dehydrogenase family BSQ33_18510 PF00158 Sigma-54 interaction domain BSQ33_18510 PF02954 Bacterial regulatory protein, Fis family BSQ33_18510 PF01590 GAF domain BSQ33_18515 PF00800 Prephenate dehydratase BSQ33_18515 PF01842 ACT domain BSQ33_18520 PF03466 LysR substrate binding domain BSQ33_18520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_18530 PF10502 Signal peptidase, peptidase S26 BSQ33_18535 PF02540 NAD synthase BSQ33_18535 PF00795 Carbon-nitrogen hydrolase BSQ33_18565 PF13302 Acetyltransferase (GNAT) domain BSQ33_18570 PF01327 Polypeptide deformylase BSQ33_18575 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system BSQ33_18580 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system BSQ33_18610 PF04229 GrpB protein BSQ33_18650 PF01361 Tautomerase enzyme BSQ33_18655 PF00892 EamA-like transporter family BSQ33_18665 PF03829 PTS system glucitol/sorbitol-specific IIA component BSQ33_18670 PF03612 Sorbitol phosphotransferase enzyme II N-terminus BSQ33_18670 PF07663 Sorbitol phosphotransferase enzyme II C-terminus BSQ33_18675 PF03608 PTS system enzyme II sorbitol-specific factor BSQ33_18680 PF00455 DeoR C terminal sensor domain BSQ33_18680 PF08220 DeoR-like helix-turn-helix domain BSQ33_18685 PF06923 Glucitol operon activator protein (GutM) BSQ33_18695 PF00106 short chain dehydrogenase BSQ33_18700 PF03829 PTS system glucitol/sorbitol-specific IIA component BSQ33_18705 PF07663 Sorbitol phosphotransferase enzyme II C-terminus BSQ33_18705 PF03612 Sorbitol phosphotransferase enzyme II N-terminus BSQ33_18710 PF03608 PTS system enzyme II sorbitol-specific factor BSQ33_18715 PF00923 Transaldolase/Fructose-6-phosphate aldolase BSQ33_18740 PF02931 Neurotransmitter-gated ion-channel ligand binding domain BSQ33_18745 PF00282 Pyridoxal-dependent decarboxylase conserved domain BSQ33_18750 PF04893 Yip1 domain BSQ33_18755 PF12833 Helix-turn-helix domain BSQ33_18760 PF14310 Fibronectin type III-like domain BSQ33_18760 PF01915 Glycosyl hydrolase family 3 C-terminal domain BSQ33_18760 PF00933 Glycosyl hydrolase family 3 N terminal domain BSQ33_18765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BSQ33_18770 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_18775 PF12911 N-terminal TM domain of oligopeptide transport permease C BSQ33_18775 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_18780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BSQ33_18780 PF00005 ABC transporter BSQ33_18785 PF00005 ABC transporter BSQ33_18785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BSQ33_18790 PF04151 Bacterial pre-peptidase C-terminal domain BSQ33_18790 PF07504 Fungalysin/Thermolysin Propeptide Motif BSQ33_18790 PF03413 Peptidase propeptide and YPEB domain BSQ33_18790 PF01447 Thermolysin metallopeptidase, catalytic domain BSQ33_18790 PF02868 Thermolysin metallopeptidase, alpha-helical domain BSQ33_18795 PF00561 alpha/beta hydrolase fold BSQ33_18810 PF00313 'Cold-shock' DNA-binding domain BSQ33_18825 PF00884 Sulfatase BSQ33_18825 PF08019 Phosphoethanolamine transferase EptA/EptB BSQ33_18830 PF00005 ABC transporter BSQ33_18835 PF02361 Cobalt transport protein BSQ33_18840 PF02553 Cobalt transport protein component CbiN BSQ33_18845 PF01891 Cobalt uptake substrate-specific transmembrane region BSQ33_18850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BSQ33_18855 PF06180 Cobalt chelatase (CbiK) BSQ33_18860 PF02571 Precorrin-6x reductase CbiJ/CobK BSQ33_18865 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BSQ33_18870 PF11760 Cobalamin synthesis G N-terminal BSQ33_18870 PF11761 Cobalamin biosynthesis central region BSQ33_18870 PF01890 Cobalamin synthesis G C-terminus BSQ33_18875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BSQ33_18880 PF05175 Methyltransferase small domain BSQ33_18885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BSQ33_18890 PF01888 CbiD BSQ33_18895 PF02570 Precorrin-8X methylmutase BSQ33_18900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BSQ33_18910 PF00128 Alpha amylase, catalytic domain BSQ33_18910 PF02806 Alpha amylase, C-terminal all-beta domain BSQ33_18930 PF01048 Phosphorylase superfamily BSQ33_18980 PF00440 Bacterial regulatory proteins, tetR family BSQ33_18985 PF01042 Endoribonuclease L-PSP BSQ33_18990 PF01497 Periplasmic binding protein BSQ33_18995 PF01032 FecCD transport family BSQ33_19000 PF01032 FecCD transport family BSQ33_19005 PF00005 ABC transporter BSQ33_19015 PF00593 TonB dependent receptor BSQ33_19015 PF07715 TonB-dependent Receptor Plug Domain BSQ33_19020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_19020 PF00672 HAMP domain BSQ33_19030 PF13599 Pentapeptide repeats (9 copies) BSQ33_19035 PF01053 Cys/Met metabolism PLP-dependent enzyme BSQ33_19045 PF02567 Phenazine biosynthesis-like protein BSQ33_19075 PF00696 Amino acid kinase family BSQ33_19080 PF13520 Amino acid permease BSQ33_19085 PF04371 Porphyromonas-type peptidyl-arginine deiminase BSQ33_19090 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BSQ33_19090 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BSQ33_19095 PF07690 Major Facilitator Superfamily BSQ33_19100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_19100 PF03466 LysR substrate binding domain BSQ33_19105 PF00440 Bacterial regulatory proteins, tetR family BSQ33_19125 PF13333 Integrase core domain BSQ33_19125 PF00665 Integrase core domain BSQ33_19125 PF13276 HTH-like domain BSQ33_19130 PF00975 Thioesterase domain BSQ33_19135 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BSQ33_19135 PF03129 Anticodon binding domain BSQ33_19135 PF02824 TGS domain BSQ33_19135 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BSQ33_19140 PF00067 Cytochrome P450 BSQ33_19145 PF07993 Male sterility protein BSQ33_19145 PF00668 Condensation domain BSQ33_19145 PF13193 AMP-binding enzyme C-terminal domain BSQ33_19145 PF00501 AMP-binding enzyme BSQ33_19145 PF00550 Phosphopantetheine attachment site BSQ33_19150 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_19150 PF00698 Acyl transferase domain BSQ33_19150 PF16197 Ketoacyl-synthetase C-terminal extension BSQ33_19150 PF08659 KR domain BSQ33_19150 PF00550 Phosphopantetheine attachment site BSQ33_19150 PF14765 Polyketide synthase dehydratase BSQ33_19150 PF02801 Beta-ketoacyl synthase, C-terminal domain BSQ33_19150 PF00109 Beta-ketoacyl synthase, N-terminal domain BSQ33_19155 PF00698 Acyl transferase domain BSQ33_19155 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_19155 PF14765 Polyketide synthase dehydratase BSQ33_19155 PF16197 Ketoacyl-synthetase C-terminal extension BSQ33_19155 PF00109 Beta-ketoacyl synthase, N-terminal domain BSQ33_19155 PF02801 Beta-ketoacyl synthase, C-terminal domain BSQ33_19155 PF08659 KR domain BSQ33_19155 PF00550 Phosphopantetheine attachment site BSQ33_19160 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_19160 PF16197 Ketoacyl-synthetase C-terminal extension BSQ33_19160 PF00109 Beta-ketoacyl synthase, N-terminal domain BSQ33_19160 PF02801 Beta-ketoacyl synthase, C-terminal domain BSQ33_19160 PF00550 Phosphopantetheine attachment site BSQ33_19160 PF00698 Acyl transferase domain BSQ33_19160 PF14765 Polyketide synthase dehydratase BSQ33_19160 PF08659 KR domain BSQ33_19165 PF00698 Acyl transferase domain BSQ33_19165 PF14765 Polyketide synthase dehydratase BSQ33_19165 PF00550 Phosphopantetheine attachment site BSQ33_19165 PF08659 KR domain BSQ33_19165 PF02801 Beta-ketoacyl synthase, C-terminal domain BSQ33_19165 PF00109 Beta-ketoacyl synthase, N-terminal domain BSQ33_19165 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_19165 PF16197 Ketoacyl-synthetase C-terminal extension BSQ33_19170 PF00550 Phosphopantetheine attachment site BSQ33_19170 PF14765 Polyketide synthase dehydratase BSQ33_19170 PF00698 Acyl transferase domain BSQ33_19170 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_19170 PF00109 Beta-ketoacyl synthase, N-terminal domain BSQ33_19170 PF02801 Beta-ketoacyl synthase, C-terminal domain BSQ33_19170 PF08659 KR domain BSQ33_19170 PF16197 Ketoacyl-synthetase C-terminal extension BSQ33_19175 PF16197 Ketoacyl-synthetase C-terminal extension BSQ33_19175 PF08240 Alcohol dehydrogenase GroES-like domain BSQ33_19175 PF00698 Acyl transferase domain BSQ33_19175 PF00550 Phosphopantetheine attachment site BSQ33_19175 PF08659 KR domain BSQ33_19175 PF02801 Beta-ketoacyl synthase, C-terminal domain BSQ33_19175 PF00109 Beta-ketoacyl synthase, N-terminal domain BSQ33_19175 PF14765 Polyketide synthase dehydratase BSQ33_19180 PF13193 AMP-binding enzyme C-terminal domain BSQ33_19180 PF00501 AMP-binding enzyme BSQ33_19180 PF00550 Phosphopantetheine attachment site BSQ33_19180 PF00668 Condensation domain BSQ33_19185 PF01527 Transposase BSQ33_19190 PF13276 HTH-like domain BSQ33_19190 PF13683 Integrase core domain BSQ33_19220 PF14431 YwqJ-like deaminase BSQ33_19220 PF18807 Tripartite Tc toxins repeat BSQ33_19240 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain BSQ33_19240 PF13018 Extended Signal Peptide of Type V secretion system BSQ33_19240 PF05594 Haemagluttinin repeat BSQ33_19240 PF05860 haemagglutination activity domain BSQ33_19240 PF13332 Hemagglutinin repeat BSQ33_19265 PF18228 CdiI N-terminal domain BSQ33_19270 PF04829 Pre-toxin domain with VENN motif BSQ33_19270 PF15526 Novel toxin 21 BSQ33_19270 PF05594 Haemagluttinin repeat BSQ33_19270 PF05860 haemagglutination activity domain BSQ33_19270 PF13332 Hemagglutinin repeat BSQ33_19345 PF05594 Haemagluttinin repeat BSQ33_19345 PF04829 Pre-toxin domain with VENN motif BSQ33_19345 PF14436 Bacterial EndoU nuclease BSQ33_19345 PF05860 haemagglutination activity domain BSQ33_19345 PF13332 Hemagglutinin repeat BSQ33_19380 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family BSQ33_19450 PF06958 S-type Pyocin BSQ33_19450 PF11429 Colicin D BSQ33_19450 PF03515 Colicin-like bacteriocin tRNase domain BSQ33_19550 PF13332 Hemagglutinin repeat BSQ33_19550 PF14436 Bacterial EndoU nuclease BSQ33_19550 PF05860 haemagglutination activity domain BSQ33_19550 PF04829 Pre-toxin domain with VENN motif BSQ33_19550 PF05594 Haemagluttinin repeat BSQ33_19580 PF00872 Transposase, Mutator family BSQ33_19685 PF15526 Novel toxin 21 BSQ33_19685 PF05860 haemagglutination activity domain BSQ33_19685 PF15526 Novel toxin 21 BSQ33_19685 PF13332 Hemagglutinin repeat BSQ33_19685 PF04829 Pre-toxin domain with VENN motif BSQ33_19685 PF05594 Haemagluttinin repeat BSQ33_19685 PF04829 Pre-toxin domain with VENN motif BSQ33_19685 PF05860 haemagglutination activity domain BSQ33_19685 PF13332 Hemagglutinin repeat BSQ33_19685 PF05594 Haemagluttinin repeat BSQ33_19690 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BSQ33_19690 PF08479 POTRA domain, ShlB-type BSQ33_19690 PF17287 POTRA domain BSQ33_19705 PF07715 TonB-dependent Receptor Plug Domain BSQ33_19705 PF00593 TonB dependent receptor BSQ33_19710 PF12833 Helix-turn-helix domain BSQ33_19710 PF02311 AraC-like ligand binding domain BSQ33_19725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BSQ33_19745 PF08502 LeuA allosteric (dimerisation) domain BSQ33_19745 PF00682 HMGL-like BSQ33_19795 PF01555 DNA methylase BSQ33_19800 PF12833 Helix-turn-helix domain BSQ33_19800 PF14525 AraC-binding-like domain BSQ33_19810 PF00939 Sodium:sulfate symporter transmembrane region BSQ33_19830 PF03466 LysR substrate binding domain BSQ33_19830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_19835 PF02652 L-lactate permease BSQ33_19840 PF02754 Cysteine-rich domain BSQ33_19845 PF13183 4Fe-4S dicluster domain BSQ33_19845 PF02589 LUD domain BSQ33_19845 PF11870 Domain of unknown function (DUF3390) BSQ33_19850 PF02589 LUD domain BSQ33_19930 PF17871 AAA lid domain BSQ33_19930 PF10431 C-terminal, D2-small domain, of ClpB protein BSQ33_19930 PF00004 ATPase family associated with various cellular activities (AAA) BSQ33_19930 PF07724 AAA domain (Cdc48 subfamily) BSQ33_19995 PF00672 HAMP domain BSQ33_19995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_19995 PF02203 Tar ligand binding domain homologue BSQ33_20000 PF00356 Bacterial regulatory proteins, lacI family BSQ33_20010 PF02754 Cysteine-rich domain BSQ33_20010 PF13183 4Fe-4S dicluster domain BSQ33_20015 PF00890 FAD binding domain BSQ33_20020 PF01266 FAD dependent oxidoreductase BSQ33_20020 PF04324 BFD-like [2Fe-2S] binding domain BSQ33_20025 PF00230 Major intrinsic protein BSQ33_20030 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BSQ33_20030 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BSQ33_20040 PF00665 Integrase core domain BSQ33_20040 PF13276 HTH-like domain BSQ33_20040 PF13333 Integrase core domain BSQ33_20045 PF00005 ABC transporter BSQ33_20050 PF01032 FecCD transport family BSQ33_20055 PF01032 FecCD transport family BSQ33_20060 PF01497 Periplasmic binding protein BSQ33_20065 PF07715 TonB-dependent Receptor Plug Domain BSQ33_20065 PF00593 TonB dependent receptor BSQ33_20095 PF04229 GrpB protein BSQ33_20095 PF13673 Acetyltransferase (GNAT) domain BSQ33_20115 PF13614 AAA domain BSQ33_20140 PF01320 Colicin immunity protein / pyocin immunity protein BSQ33_20145 PF06958 S-type Pyocin BSQ33_20155 PF00457 Glycosyl hydrolases family 11 BSQ33_20155 PF16841 Ca-dependent carbohydrate-binding module xylan-binding BSQ33_20160 PF03664 Glycosyl hydrolase family 62 BSQ33_20160 PF03422 Carbohydrate binding module (family 6) BSQ33_20160 PF00553 Cellulose binding domain BSQ33_20185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BSQ33_20185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BSQ33_20190 PF01177 Asp/Glu/Hydantoin racemase BSQ33_20205 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BSQ33_20210 PF03466 LysR substrate binding domain BSQ33_20210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_20220 PF02743 Cache domain BSQ33_20220 PF00672 HAMP domain BSQ33_20220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_20225 PF00135 Carboxylesterase family BSQ33_20240 PF00529 HlyD membrane-fusion protein of T1SS BSQ33_20240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BSQ33_20250 PF00232 Glycosyl hydrolase family 1 BSQ33_20255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_20255 PF00672 HAMP domain BSQ33_20255 PF02743 Cache domain BSQ33_20265 PF07681 DoxX BSQ33_20270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_20270 PF03466 LysR substrate binding domain BSQ33_20275 PF04219 Protein of unknown function, DUF BSQ33_20280 PF02378 Phosphotransferase system, EIIC BSQ33_20280 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BSQ33_20280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BSQ33_20285 PF01232 Mannitol dehydrogenase Rossmann domain BSQ33_20285 PF08125 Mannitol dehydrogenase C-terminal domain BSQ33_20290 PF05068 Mannitol repressor BSQ33_20300 PF00474 Sodium:solute symporter family BSQ33_20310 PF14850 DNA-binding domain of Proline dehydrogenase BSQ33_20310 PF01619 Proline dehydrogenase BSQ33_20310 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BSQ33_20310 PF00171 Aldehyde dehydrogenase family BSQ33_20315 PF12833 Helix-turn-helix domain BSQ33_20325 PF03781 Sulfatase-modifying factor enzyme 1 BSQ33_20330 PF01243 Pyridoxamine 5'-phosphate oxidase BSQ33_20330 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BSQ33_20335 PF00529 HlyD membrane-fusion protein of T1SS BSQ33_20350 PF00664 ABC transporter transmembrane region BSQ33_20350 PF03412 Peptidase C39 family BSQ33_20350 PF00005 ABC transporter BSQ33_20360 PF13718 GNAT acetyltransferase 2 BSQ33_20360 PF05127 Helicase BSQ33_20370 PF18607 ParA helix turn helix domain BSQ33_20370 PF13614 AAA domain BSQ33_20390 PF01709 Transcriptional regulator BSQ33_20395 PF06481 COX Aromatic Rich Motif BSQ33_20395 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BSQ33_20400 PF00115 Cytochrome C and Quinol oxidase polypeptide I BSQ33_20405 PF00510 Cytochrome c oxidase subunit III BSQ33_20410 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BSQ33_20415 PF01040 UbiA prenyltransferase family BSQ33_20420 PF00343 Carbohydrate phosphorylase BSQ33_20425 PF02446 4-alpha-glucanotransferase BSQ33_20430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BSQ33_20430 PF02806 Alpha amylase, C-terminal all-beta domain BSQ33_20430 PF00128 Alpha amylase, catalytic domain BSQ33_20435 PF01565 FAD binding domain BSQ33_20435 PF02913 FAD linked oxidases, C-terminal domain BSQ33_20455 PF07690 Major Facilitator Superfamily BSQ33_20460 PF01047 MarR family BSQ33_20465 PF02441 Flavoprotein BSQ33_20470 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BSQ33_20480 PF17189 Glycosyl hydrolase family 30 beta sandwich domain BSQ33_20490 PF00132 Bacterial transferase hexapeptide (six repeats) BSQ33_20490 PF14602 Hexapeptide repeat of succinyl-transferase BSQ33_20490 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BSQ33_20495 PF13673 Acetyltransferase (GNAT) domain BSQ33_20510 PF05362 Lon protease (S16) C-terminal proteolytic domain BSQ33_20510 PF13654 AAA domain BSQ33_20515 PF01554 MatE BSQ33_20520 PF00793 DAHP synthetase I family BSQ33_20525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BSQ33_20525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BSQ33_20525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BSQ33_20525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BSQ33_20530 PF00884 Sulfatase BSQ33_20530 PF08019 Phosphoethanolamine transferase EptA/EptB BSQ33_20535 PF01219 Prokaryotic diacylglycerol kinase BSQ33_20540 PF00480 ROK family BSQ33_20545 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_20545 PF03707 Bacterial signalling protein N terminal repeat BSQ33_20545 PF00563 EAL domain BSQ33_20560 PF03352 Methyladenine glycosylase BSQ33_20565 PF02626 Carboxyltransferase domain, subdomain A and B BSQ33_20575 PF00364 Biotin-requiring enzyme BSQ33_20580 PF03746 LamB/YcsF family BSQ33_20585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_20585 PF03466 LysR substrate binding domain BSQ33_20595 PF01769 Divalent cation transporter BSQ33_20595 PF00571 CBS domain BSQ33_20595 PF03448 MgtE intracellular N domain BSQ33_20600 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BSQ33_20605 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_20610 PF00005 ABC transporter BSQ33_20610 PF00571 CBS domain BSQ33_20625 PF00194 Eukaryotic-type carbonic anhydrase BSQ33_20630 PF03605 Anaerobic c4-dicarboxylate membrane transporter BSQ33_20635 PF02540 NAD synthase BSQ33_20640 PF01467 Cytidylyltransferase-like BSQ33_20645 PF11849 Domain of unknown function (DUF3369) BSQ33_20650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_20650 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_20650 PF00497 Bacterial extracellular solute-binding proteins, family 3 BSQ33_20655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_20655 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_20655 PF00497 Bacterial extracellular solute-binding proteins, family 3 BSQ33_20670 PF04717 Type VI secretion system, phage-baseplate injector BSQ33_20670 PF16671 Actin cross-linking domain BSQ33_20680 PF05257 CHAP domain BSQ33_20680 PF01476 LysM domain BSQ33_20715 PF02742 Iron dependent repressor, metal binding and dimerisation domain BSQ33_20715 PF01325 Iron dependent repressor, N-terminal DNA binding domain BSQ33_20720 PF01566 Natural resistance-associated macrophage protein BSQ33_20740 PF07944 Beta-L-arabinofuranosidase, GH127 BSQ33_20750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BSQ33_20750 PF12793 Sugar transport-related sRNA regulator N-term BSQ33_20755 PF01717 Cobalamin-independent synthase, Catalytic domain BSQ33_20755 PF08267 Cobalamin-independent synthase, N-terminal domain BSQ33_20765 PF01037 Lrp/AsnC ligand binding domain BSQ33_20770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_20770 PF03466 LysR substrate binding domain BSQ33_20785 PF00245 Alkaline phosphatase BSQ33_20805 PF00501 AMP-binding enzyme BSQ33_20820 PF00072 Response regulator receiver domain BSQ33_20820 PF00486 Transcriptional regulatory protein, C terminal BSQ33_20825 PF08521 Two-component sensor kinase N-terminal BSQ33_20825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_20825 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_20840 PF00501 AMP-binding enzyme BSQ33_20840 PF13193 AMP-binding enzyme C-terminal domain BSQ33_20845 PF00583 Acetyltransferase (GNAT) family BSQ33_20850 PF00202 Aminotransferase class-III BSQ33_20855 PF06339 Ectoine synthase BSQ33_20860 PF13840 ACT domain BSQ33_20860 PF00696 Amino acid kinase family BSQ33_20865 PF00710 Asparaginase, N-terminal BSQ33_20865 PF17763 Glutaminase/Asparaginase C-terminal domain BSQ33_20875 PF02743 Cache domain BSQ33_20875 PF00672 HAMP domain BSQ33_20875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_20880 PF02678 Pirin BSQ33_20880 PF05726 Pirin C-terminal cupin domain BSQ33_20890 PF00924 Mechanosensitive ion channel BSQ33_20900 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BSQ33_20900 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BSQ33_20915 PF00072 Response regulator receiver domain BSQ33_20915 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_20930 PF00072 Response regulator receiver domain BSQ33_20930 PF01584 CheW-like domain BSQ33_20935 PF08447 PAS fold BSQ33_20935 PF13426 PAS domain BSQ33_20935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_20945 PF13302 Acetyltransferase (GNAT) domain BSQ33_20955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_20955 PF03466 LysR substrate binding domain BSQ33_20960 PF11975 Family 4 glycosyl hydrolase C-terminal domain BSQ33_20960 PF02056 Family 4 glycosyl hydrolase BSQ33_20965 PF12843 Putative quorum-sensing-regulated virulence factor BSQ33_20970 PF14521 Lysine-specific metallo-endopeptidase BSQ33_20975 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BSQ33_20975 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BSQ33_20985 PF05992 SbmA/BacA-like family BSQ33_20990 PF01047 MarR family BSQ33_20995 PF02566 OsmC-like protein BSQ33_21000 PF00085 Thioredoxin BSQ33_21010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_21010 PF00672 HAMP domain BSQ33_21010 PF12729 Four helix bundle sensory module for signal transduction BSQ33_21015 PF02743 Cache domain BSQ33_21015 PF00672 HAMP domain BSQ33_21015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_21020 PF00043 Glutathione S-transferase, C-terminal domain BSQ33_21020 PF13417 Glutathione S-transferase, N-terminal domain BSQ33_21025 PF00497 Bacterial extracellular solute-binding proteins, family 3 BSQ33_21030 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_21035 PF00528 Binding-protein-dependent transport system inner membrane component BSQ33_21040 PF00005 ABC transporter BSQ33_21045 PF12833 Helix-turn-helix domain BSQ33_21050 PF01810 LysE type translocator BSQ33_21055 PF02423 Ornithine cyclodeaminase/mu-crystallin family BSQ33_21070 PF01063 Amino-transferase class IV BSQ33_21090 PF13404 AsnC-type helix-turn-helix domain BSQ33_21090 PF01037 Lrp/AsnC ligand binding domain BSQ33_21100 PF02929 Beta galactosidase small chain BSQ33_21100 PF02837 Glycosyl hydrolases family 2, sugar binding domain BSQ33_21100 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BSQ33_21100 PF16353 Domain of unknown function(DUF4981) BSQ33_21100 PF00703 Glycosyl hydrolases family 2 BSQ33_21130 PF01882 Protein of unknown function DUF58 BSQ33_21135 PF17863 AAA lid domain BSQ33_21135 PF07726 ATPase family associated with various cellular activities (AAA) BSQ33_21140 PF02743 Cache domain BSQ33_21140 PF00672 HAMP domain BSQ33_21140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_21150 PF00155 Aminotransferase class I and II BSQ33_21160 PF01546 Peptidase family M20/M25/M40 BSQ33_21160 PF07687 Peptidase dimerisation domain BSQ33_21170 PF01590 GAF domain BSQ33_21170 PF00158 Sigma-54 interaction domain BSQ33_21175 PF00313 'Cold-shock' DNA-binding domain BSQ33_21180 PF03889 Alternative ribosome-rescue factor A BSQ33_21190 PF00672 HAMP domain BSQ33_21190 PF00072 Response regulator receiver domain BSQ33_21190 PF01627 Hpt domain BSQ33_21190 PF00512 His Kinase A (phospho-acceptor) domain BSQ33_21190 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BSQ33_21190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BSQ33_21200 PF01256 Carbohydrate kinase BSQ33_21200 PF03853 YjeF-related protein N-terminus BSQ33_21210 PF00478 IMP dehydrogenase / GMP reductase domain BSQ33_21310 PF00472 RF-1 domain BSQ33_21315 PF01553 Acyltransferase BSQ33_21315 PF00501 AMP-binding enzyme BSQ33_21320 PF01738 Dienelactone hydrolase family BSQ33_21325 PF13520 Amino acid permease BSQ33_21330 PF05985 Ethanolamine ammonia-lyase light chain (EutC) BSQ33_21335 PF06751 Ethanolamine ammonia lyase large subunit (EutB) BSQ33_21340 PF12833 Helix-turn-helix domain BSQ33_21350 PF01212 Beta-eliminating lyase BSQ33_21360 PF07690 Major Facilitator Superfamily BSQ33_21365 PF03466 LysR substrate binding domain BSQ33_21365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BSQ33_21370 PF00232 Glycosyl hydrolase family 1 BSQ33_21375 PF00367 phosphotransferase system, EIIB BSQ33_21375 PF02378 Phosphotransferase system, EIIC BSQ33_21380 PF01202 Shikimate kinase BSQ33_21385 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BSQ33_21385 PF00356 Bacterial regulatory proteins, lacI family BSQ33_21390 PF00672 HAMP domain BSQ33_21390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BSQ33_21395 PF04286 Protein of unknown function (DUF445) BSQ33_21400 PF00005 ABC transporter BSQ33_21400 PF00664 ABC transporter transmembrane region BSQ33_21415 PF00375 Sodium:dicarboxylate symporter family BSQ33_21425 PF17158 Membrane-associated sensor, integral membrane domain BSQ33_21425 PF00990 Diguanylate cyclase, GGDEF domain BSQ33_21435 PF08349 Protein of unknown function (DUF1722) BSQ33_21440 PF13411 MerR HTH family regulatory protein BSQ33_21445 PF00875 DNA photolyase BSQ33_21445 PF03441 FAD binding domain of DNA photolyase BSQ33_21450 PF03734 L,D-transpeptidase catalytic domain BSQ33_21450 PF17969 L,D-transpeptidase C-terminal domain BSQ33_21450 PF01476 LysM domain