locus-tag class description MID13_00005 PF00308 Bacterial dnaA protein MID13_00005 PF08299 Bacterial dnaA protein helix-turn-helix MID13_00005 PF11638 DnaA N-terminal domain MID13_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain MID13_00010 PF02767 DNA polymerase III beta subunit, central domain MID13_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain MID13_00015 PF02463 RecF/RecN/SMC N terminal domain MID13_00020 PF00204 DNA gyrase B MID13_00020 PF00986 DNA gyrase B subunit, carboxyl terminus MID13_00020 PF18053 DNA gyrase B subunit insert domain MID13_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_00020 PF01751 Toprim domain MID13_00025 PF01734 Patatin-like phospholipase MID13_00030 PF00011 Hsp20/alpha crystallin family MID13_00035 PF00155 Aminotransferase class I and II MID13_00055 PF04972 BON domain MID13_00055 PF00263 Bacterial type II and III secretion system protein MID13_00055 PF13629 Pilus formation protein N terminal region MID13_00070 PF00437 Type II/IV secretion system protein MID13_00110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_00115 PF00486 Transcriptional regulatory protein, C terminal MID13_00115 PF00072 Response regulator receiver domain MID13_00120 PF00128 Alpha amylase, catalytic domain MID13_00125 PF05746 DALR anticodon binding domain MID13_00125 PF02092 Glycyl-tRNA synthetase beta subunit MID13_00130 PF02091 Glycyl-tRNA synthetase alpha subunit MID13_00135 PF01169 Uncharacterized protein family UPF0016 MID13_00145 PF01206 Sulfurtransferase TusA MID13_00155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_00155 PF03466 LysR substrate binding domain MID13_00160 PF08240 Alcohol dehydrogenase GroES-like domain MID13_00160 PF00107 Zinc-binding dehydrogenase MID13_00165 PF02803 Thiolase, C-terminal domain MID13_00165 PF00108 Thiolase, N-terminal domain MID13_00170 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MID13_00170 PF00378 Enoyl-CoA hydratase/isomerase MID13_00170 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MID13_00175 PF01205 Uncharacterized protein family UPF0029 MID13_00175 PF09186 Domain of unknown function (DUF1949) MID13_00180 PF02386 Cation transport protein MID13_00185 PF12724 Flavodoxin domain MID13_00230 PF03466 LysR substrate binding domain MID13_00230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_00235 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MID13_00235 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MID13_00240 PF04380 Membrane fusogenic activity MID13_00245 PF00873 AcrB/AcrD/AcrF family MID13_00250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID13_00255 PF00440 Bacterial regulatory proteins, tetR family MID13_00260 PF00580 UvrD/REP helicase N-terminal domain MID13_00260 PF13361 UvrD-like helicase C-terminal domain MID13_00265 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID13_00295 PF00005 ABC transporter MID13_00295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_00300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID13_00305 PF00528 Binding-protein-dependent transport system inner membrane component MID13_00310 PF12911 N-terminal TM domain of oligopeptide transport permease C MID13_00310 PF00528 Binding-protein-dependent transport system inner membrane component MID13_00350 PF00069 Protein kinase domain MID13_00350 PF03793 PASTA domain MID13_00355 PF03116 NQR2, RnfD, RnfE family MID13_00365 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_00365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID13_00370 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ MID13_00375 PF01432 Peptidase family M3 MID13_00380 PF01037 Lrp/AsnC ligand binding domain MID13_00385 PF00563 EAL domain MID13_00385 PF00990 Diguanylate cyclase, GGDEF domain MID13_00385 PF08448 PAS fold MID13_00390 PF04445 Putative SAM-dependent methyltransferase MID13_00400 PF00892 EamA-like transporter family MID13_00405 PF00582 Universal stress protein family MID13_00410 PF00210 Ferritin-like domain MID13_00415 PF10625 Universal stress protein B (UspB) MID13_00430 PF02646 RmuC family MID13_00435 PF01209 ubiE/COQ5 methyltransferase family MID13_00440 PF02036 SCP-2 sterol transfer family MID13_00445 PF03109 ABC1 family MID13_00450 PF02416 mttA/Hcf106 family MID13_00455 PF02416 mttA/Hcf106 family MID13_00460 PF00902 Sec-independent protein translocase protein (TatC) MID13_00465 PF01026 TatD related DNase MID13_00470 PF00490 Delta-aminolevulinic acid dehydratase MID13_00480 PF01612 3'-5' exonuclease MID13_00480 PF00476 DNA polymerase family A MID13_00480 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MID13_00480 PF01367 5'-3' exonuclease, C-terminal SAM fold MID13_00490 PF01926 50S ribosome-binding GTPase MID13_00495 PF00034 Cytochrome c MID13_00505 PF04220 Der GTPase activator (YihI) MID13_00510 PF10675 Protein of unknown function (DUF2489) MID13_00515 PF04055 Radical SAM superfamily MID13_00515 PF06969 HemN C-terminal domain MID13_00520 PF00563 EAL domain MID13_00520 PF00990 Diguanylate cyclase, GGDEF domain MID13_00520 PF03707 Bacterial signalling protein N terminal repeat MID13_00525 PF00158 Sigma-54 interaction domain MID13_00525 PF00072 Response regulator receiver domain MID13_00525 PF02954 Bacterial regulatory protein, Fis family MID13_00530 PF00512 His Kinase A (phospho-acceptor) domain MID13_00530 PF00989 PAS fold MID13_00530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_00540 PF03951 Glutamine synthetase, beta-Grasp domain MID13_00540 PF00120 Glutamine synthetase, catalytic domain MID13_00545 PF00009 Elongation factor Tu GTP binding domain MID13_00545 PF00679 Elongation factor G C-terminus MID13_00545 PF03144 Elongation factor Tu domain 2 MID13_00560 PF03631 Virulence factor BrkB MID13_00565 PF02580 D-Tyr-tRNA(Tyr) deacylase MID13_00570 PF00583 Acetyltransferase (GNAT) family MID13_00570 PF09500 Putative thioesterase (yiiD_Cterm) MID13_00580 PF01293 Phosphoenolpyruvate carboxykinase MID13_00585 PF01430 Hsp33 protein MID13_00590 PF01479 S4 domain MID13_00595 PF11356 Type II secretion system protein C MID13_00600 PF03958 Bacterial type II/III secretion system short domain MID13_00600 PF00263 Bacterial type II and III secretion system protein MID13_00605 PF00437 Type II/IV secretion system protein MID13_00610 PF00482 Type II secretion system (T2SS), protein F MID13_00615 PF07963 Prokaryotic N-terminal methylation motif MID13_00615 PF08334 Type II secretion system (T2SS), protein G MID13_00620 PF12019 Type II transport protein GspH MID13_00625 PF07963 Prokaryotic N-terminal methylation motif MID13_00625 PF02501 Type II secretion system (T2SS), protein I MID13_00630 PF07963 Prokaryotic N-terminal methylation motif MID13_00630 PF11612 Type II secretion system (T2SS), protein J MID13_00635 PF03934 Type II secretion system (T2SS), protein K MID13_00640 PF05134 Type II secretion system (T2SS), protein L MID13_00640 PF12693 GspL periplasmic domain MID13_00645 PF04612 Type II secretion system (T2SS), protein M MID13_00650 PF01203 Type II secretion system (T2SS), protein N MID13_00660 PF00459 Inositol monophosphatase family MID13_00665 PF00293 NUDIX domain MID13_00670 PF01521 Iron-sulphur cluster biosynthesis MID13_00670 PF01106 NifU-like domain MID13_00675 PF00156 Phosphoribosyl transferase domain MID13_00680 PF00561 alpha/beta hydrolase fold MID13_00690 PF16921 Tex protein YqgF-like domain MID13_00690 PF09371 Tex-like protein N-terminal domain MID13_00690 PF17674 HHH domain MID13_00690 PF00575 S1 RNA binding domain MID13_00695 PF03449 Transcription elongation factor, N-terminal MID13_00695 PF01272 Transcription elongation factor, GreA/GreB, C-term MID13_00700 PF00313 'Cold-shock' DNA-binding domain MID13_00710 PF00072 Response regulator receiver domain MID13_00710 PF00486 Transcriptional regulatory protein, C terminal MID13_00715 PF00672 HAMP domain MID13_00715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_00715 PF00512 His Kinase A (phospho-acceptor) domain MID13_00720 PF00270 DEAD/DEAH box helicase MID13_00720 PF00271 Helicase conserved C-terminal domain MID13_00720 PF17191 RecG wedge domain MID13_00730 PF02824 TGS domain MID13_00730 PF13291 ACT domain MID13_00730 PF04607 Region found in RelA / SpoT proteins MID13_00735 PF01192 RNA polymerase Rpb6 MID13_00740 PF00625 Guanylate kinase MID13_00745 PF00860 Permease family MID13_00775 PF00313 'Cold-shock' DNA-binding domain MID13_00780 PF00892 EamA-like transporter family MID13_00785 PF08340 Domain of unknown function (DUF1732) MID13_00785 PF03755 YicC-like family, N-terminal region MID13_00790 PF01138 3' exoribonuclease family, domain 1 MID13_00790 PF03725 3' exoribonuclease family, domain 2 MID13_00795 PF00156 Phosphoribosyl transferase domain MID13_00800 PF03279 Bacterial lipid A biosynthesis acyltransferase MID13_00805 PF00440 Bacterial regulatory proteins, tetR family MID13_00810 PF04127 DNA / pantothenate metabolism flavoprotein MID13_00810 PF02441 Flavoprotein MID13_00815 PF04002 RadC-like JAB domain MID13_00820 PF00830 Ribosomal L28 family MID13_00825 PF00471 Ribosomal protein L33 MID13_00835 PF06827 Zinc finger found in FPG and IleRS MID13_00835 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MID13_00835 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MID13_00840 PF05686 Glycosyl transferase family 90 MID13_00845 PF01467 Cytidylyltransferase-like MID13_00850 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MID13_00855 PF00535 Glycosyl transferase family 2 MID13_00860 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MID13_00870 PF16363 GDP-mannose 4,6 dehydratase MID13_00875 PF00483 Nucleotidyl transferase MID13_00880 PF05523 WxcM-like, C-terminal MID13_00885 PF00132 Bacterial transferase hexapeptide (six repeats) MID13_00890 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MID13_00910 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MID13_00910 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MID13_00910 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MID13_00910 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MID13_00915 PF00483 Nucleotidyl transferase MID13_00915 PF01050 Mannose-6-phosphate isomerase MID13_00920 PF00293 NUDIX domain MID13_00925 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MID13_00930 PF01370 NAD dependent epimerase/dehydratase family MID13_00935 PF16363 GDP-mannose 4,6 dehydratase MID13_00940 PF01531 Glycosyl transferase family 11 MID13_00945 PF13439 Glycosyltransferase Family 4 MID13_00945 PF00534 Glycosyl transferases group 1 MID13_00955 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) MID13_00960 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MID13_00965 PF03279 Bacterial lipid A biosynthesis acyltransferase MID13_00970 PF01370 NAD dependent epimerase/dehydratase family MID13_00975 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MID13_00975 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MID13_00975 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MID13_00980 PF08360 QacR-like protein, C-terminal region MID13_00980 PF00440 Bacterial regulatory proteins, tetR family MID13_00985 PF01551 Peptidase family M23 MID13_00990 PF06426 Serine acetyltransferase, N-terminal MID13_00990 PF00132 Bacterial transferase hexapeptide (six repeats) MID13_00995 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MID13_00995 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MID13_01000 PF02556 Preprotein translocase subunit SecB MID13_01005 PF00581 Rhodanese-like domain MID13_01025 PF06082 Exopolysaccharide biosynthesis protein YbjH MID13_01030 PF18412 Outer-membrane lipoprotein Wza C-terminal domain MID13_01030 PF10531 SLBB domain MID13_01030 PF02563 Polysaccharide biosynthesis/export protein MID13_01035 PF01451 Low molecular weight phosphotyrosine protein phosphatase MID13_01040 PF13614 AAA domain MID13_01040 PF13807 G-rich domain on putative tyrosine kinase MID13_01040 PF02706 Chain length determinant protein MID13_01070 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MID13_01075 PF01565 FAD binding domain MID13_01075 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MID13_01085 PF00535 Glycosyl transferase family 2 MID13_01100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MID13_01100 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MID13_01100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MID13_01110 PF02397 Bacterial sugar transferase MID13_01115 PF00483 Nucleotidyl transferase MID13_01120 PF06415 BPG-independent PGAM N-terminus (iPGM_N) MID13_01120 PF01676 Metalloenzyme superfamily MID13_01125 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MID13_01125 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MID13_01130 PF01554 MatE MID13_01135 PF00166 Chaperonin 10 Kd subunit MID13_01140 PF00118 TCP-1/cpn60 chaperonin family MID13_01155 PF00563 EAL domain MID13_01155 PF00990 Diguanylate cyclase, GGDEF domain MID13_01155 PF13426 PAS domain MID13_01160 PF02308 MgtC family MID13_01165 PF07963 Prokaryotic N-terminal methylation motif MID13_01165 PF00114 Pilin (bacterial filament) MID13_01170 PF04055 Radical SAM superfamily MID13_01175 PF09285 Elongation factor P, C-terminal MID13_01175 PF01132 Elongation factor P (EF-P) OB domain MID13_01175 PF08207 Elongation factor P (EF-P) KOW-like domain MID13_01185 PF02313 Fumarate reductase subunit D MID13_01190 PF02300 Fumarate reductase subunit C MID13_01195 PF13183 4Fe-4S dicluster domain MID13_01195 PF13085 2Fe-2S iron-sulfur cluster binding domain MID13_01200 PF00890 FAD binding domain MID13_01200 PF02910 Fumarate reductase flavoprotein C-term MID13_01205 PF00152 tRNA synthetases class II (D, K and N) MID13_01215 PF00672 HAMP domain MID13_01215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_01220 PF03600 Citrate transporter MID13_01220 PF02080 TrkA-C domain MID13_01225 PF02666 Phosphatidylserine decarboxylase MID13_01230 PF03193 RsgA GTPase MID13_01235 PF00929 Exonuclease MID13_01320 PF08331 Domain of unknown function (DUF1730) MID13_01325 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE MID13_01330 PF01520 N-acetylmuramoyl-L-alanine amidase MID13_01335 PF01119 DNA mismatch repair protein, C-terminal domain MID13_01335 PF08676 MutL C terminal dimerisation domain MID13_01345 PF17209 Hfq protein MID13_01350 PF01926 50S ribosome-binding GTPase MID13_01350 PF16360 GTP-binding GTPase Middle Region MID13_01350 PF13167 GTP-binding GTPase N-terminal MID13_01355 PF01145 SPFH domain / Band 7 family MID13_01355 PF12221 Bacterial membrane protein N terminal MID13_01360 PF01145 SPFH domain / Band 7 family MID13_01365 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) MID13_01370 PF00709 Adenylosuccinate synthetase MID13_01375 PF08238 Sel1 repeat MID13_01380 PF01979 Amidohydrolase family MID13_01385 PF00575 S1 RNA binding domain MID13_01385 PF17876 Cold shock domain MID13_01385 PF08461 Ribonuclease R winged-helix domain MID13_01385 PF08206 Ribonuclease B OB domain MID13_01385 PF00773 RNB domain MID13_01390 PF08032 RNA 2'-O ribose methyltransferase substrate binding MID13_01390 PF00588 SpoU rRNA Methylase family MID13_01395 PF01250 Ribosomal protein S6 MID13_01400 PF01084 Ribosomal protein S18 MID13_01405 PF03948 Ribosomal protein L9, C-terminal domain MID13_01405 PF01281 Ribosomal protein L9, N-terminal domain MID13_01415 PF00772 DnaB-like helicase N terminal domain MID13_01415 PF03796 DnaB-like helicase C terminal domain MID13_01420 PF00842 Alanine racemase, C-terminal domain MID13_01420 PF01168 Alanine racemase, N-terminal domain MID13_01430 PF01894 Uncharacterised protein family UPF0047 MID13_01435 PF00342 Phosphoglucose isomerase MID13_01445 PF01475 Ferric uptake regulator family MID13_01475 PF05840 Bacteriophage replication gene A protein (GPA) MID13_01565 PF01207 Dihydrouridine synthase (Dus) MID13_01585 PF00667 FAD binding domain MID13_01585 PF00175 Oxidoreductase NAD-binding domain MID13_01585 PF00258 Flavodoxin MID13_01590 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MID13_01590 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MID13_01595 PF01507 Phosphoadenosine phosphosulfate reductase family MID13_01665 PF00999 Sodium/hydrogen exchanger family MID13_01670 PF02310 B12 binding domain MID13_01670 PF02607 B12 binding domain MID13_01670 PF00809 Pterin binding enzyme MID13_01670 PF02574 Homocysteine S-methyltransferase MID13_01670 PF02965 Vitamin B12 dependent methionine synthase, activation domain MID13_01675 PF01842 ACT domain MID13_01675 PF00696 Amino acid kinase family MID13_01680 PF00266 Aminotransferase class-V MID13_01690 PF17760 UvrA interaction domain MID13_01690 PF17755 UvrA DNA-binding domain MID13_01690 PF00005 ABC transporter MID13_01695 PF00483 Nucleotidyl transferase MID13_01700 PF00196 Bacterial regulatory proteins, luxR family MID13_01705 PF00436 Single-strand binding protein family MID13_01710 PF00563 EAL domain MID13_01710 PF00990 Diguanylate cyclase, GGDEF domain MID13_01710 PF17157 Gammaproteobacterial periplasmic sensor domain MID13_01730 PF07660 Secretin and TonB N terminus short domain MID13_01730 PF03958 Bacterial type II/III secretion system short domain MID13_01730 PF00263 Bacterial type II and III secretion system protein MID13_01730 PF11741 AMIN domain MID13_01735 PF01471 Putative peptidoglycan binding domain MID13_01735 PF13401 AAA domain MID13_01745 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain MID13_01745 PF00437 Type II/IV secretion system protein MID13_01750 PF00482 Type II secretion system (T2SS), protein F MID13_01760 PF07963 Prokaryotic N-terminal methylation motif MID13_01765 PF07963 Prokaryotic N-terminal methylation motif MID13_01800 PF04085 rod shape-determining protein MreC MID13_01805 PF04093 rod shape-determining protein MreD MID13_01810 PF02545 Maf-like protein MID13_01815 PF00575 S1 RNA binding domain MID13_01815 PF10150 Ribonuclease E/G family MID13_01825 PF00795 Carbon-nitrogen hydrolase MID13_01830 PF01523 Putative modulator of DNA gyrase MID13_01835 PF02562 PhoH-like protein MID13_01835 PF13638 PIN domain MID13_01840 PF00271 Helicase conserved C-terminal domain MID13_01840 PF12137 RNA polymerase recycling family C-terminal MID13_01840 PF00176 SNF2 family N-terminal domain MID13_01840 PF18339 RapA N-terminal Tudor like domain 1 MID13_01840 PF18337 RapA N-terminal Tudor like domain MID13_01855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MID13_01855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID13_01860 PF00582 Universal stress protein family MID13_01875 PF01316 Arginine repressor, DNA binding domain MID13_01875 PF02863 Arginine repressor, C-terminal domain MID13_01880 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MID13_01880 PF00056 lactate/malate dehydrogenase, NAD binding domain MID13_01890 PF00348 Polyprenyl synthetase MID13_01895 PF00829 Ribosomal prokaryotic L21 protein MID13_01900 PF01016 Ribosomal L27 protein MID13_01905 PF01018 GTP1/OBG MID13_01905 PF01926 50S ribosome-binding GTPase MID13_01910 PF06738 Putative threonine/serine exporter MID13_01915 PF12821 Threonine/Serine exporter, ThrE MID13_01920 PF00186 Dihydrofolate reductase MID13_01925 PF00149 Calcineurin-like phosphoesterase MID13_01930 PF04379 ApaG domain MID13_01935 PF00398 Ribosomal RNA adenine dimethylase MID13_01940 PF04166 Pyridoxal phosphate biosynthetic protein PdxA MID13_01945 PF00639 PPIC-type PPIASE domain MID13_01945 PF09312 SurA N-terminal domain MID13_01950 PF04453 LPS transport system D MID13_01950 PF03968 OstA-like protein MID13_01955 PF00226 DnaJ domain MID13_01955 PF05099 Tellurite resistance protein TerB MID13_01970 PF00694 Aconitase C-terminal domain MID13_01975 PF00330 Aconitase family (aconitate hydratase) MID13_01980 PF00180 Isocitrate/isopropylmalate dehydrogenase MID13_01985 PF00682 HMGL-like MID13_01985 PF08502 LeuA allosteric (dimerisation) domain MID13_02005 PF01569 PAP2 superfamily MID13_02015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_02015 PF03466 LysR substrate binding domain MID13_02020 PF00501 AMP-binding enzyme MID13_02025 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID13_02025 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID13_02025 PF00205 Thiamine pyrophosphate enzyme, central domain MID13_02030 PF10369 Small subunit of acetolactate synthase MID13_02035 PF00990 Diguanylate cyclase, GGDEF domain MID13_02035 PF17158 Membrane-associated sensor, integral membrane domain MID13_02045 PF02887 Pyruvate kinase, alpha/beta domain MID13_02045 PF00224 Pyruvate kinase, barrel domain MID13_02050 PF00455 DeoR C terminal sensor domain MID13_02050 PF08220 DeoR-like helix-turn-helix domain MID13_02055 PF01380 SIS domain MID13_02060 PF01053 Cys/Met metabolism PLP-dependent enzyme MID13_02070 PF04546 Sigma-70, non-essential region MID13_02070 PF03979 Sigma-70 factor, region 1.1 MID13_02070 PF00140 Sigma-70 factor, region 1.2 MID13_02070 PF04542 Sigma-70 region 2 MID13_02070 PF04539 Sigma-70 region 3 MID13_02070 PF04545 Sigma-70, region 4 MID13_02075 PF01807 CHC2 zinc finger MID13_02075 PF08275 DNA primase catalytic core, N-terminal domain MID13_02075 PF08278 DNA primase DnaG DnaB-binding MID13_02075 PF10410 DnaB-helicase binding domain of primase MID13_02080 PF09424 Yqey-like protein MID13_02085 PF01165 Ribosomal protein S21 MID13_02090 PF00814 Glycoprotease family MID13_02095 PF12697 Alpha/beta hydrolase family MID13_02100 PF02660 Glycerol-3-phosphate acyltransferase MID13_02105 PF02152 Dihydroneopterin aldolase MID13_02110 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MID13_02115 PF02673 Bacitracin resistance protein BacA MID13_02120 PF01966 HD domain MID13_02120 PF01743 Poly A polymerase head domain MID13_02120 PF12627 Probable RNA and SrmB- binding site of polymerase A MID13_02125 PF13401 AAA domain MID13_02125 PF01471 Putative peptidoglycan binding domain MID13_02135 PF08239 Bacterial SH3 domain MID13_02140 PF01384 Phosphate transporter family MID13_02145 PF01865 Protein of unknown function DUF47 MID13_02150 PF01928 CYTH domain MID13_02155 PF07885 Ion channel MID13_02165 PF08335 GlnD PII-uridylyltransferase MID13_02165 PF03710 Glutamate-ammonia ligase adenylyltransferase MID13_02170 PF01467 Cytidylyltransferase-like MID13_02170 PF00294 pfkB family carbohydrate kinase MID13_02175 PF02321 Outer membrane efflux protein MID13_02180 PF00293 NUDIX domain MID13_02185 PF06853 Protein of unknown function (DUF1249) MID13_02190 PF00149 Calcineurin-like phosphoesterase MID13_02195 PF05728 Uncharacterised protein family (UPF0227) MID13_02200 PF00204 DNA gyrase B MID13_02200 PF00986 DNA gyrase B subunit, carboxyl terminus MID13_02200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_02200 PF01751 Toprim domain MID13_02205 PF03989 DNA gyrase C-terminal domain, beta-propeller MID13_02205 PF00521 DNA gyrase/topoisomerase IV, subunit A MID13_02210 PF13180 PDZ domain MID13_02215 PF13180 PDZ domain MID13_02215 PF00595 PDZ domain MID13_02220 PF06295 Protein of unknown function (DUF1043) MID13_02225 PF03969 AFG1-like ATPase MID13_02230 PF00572 Ribosomal protein L13 MID13_02235 PF00380 Ribosomal protein S9/S16 MID13_02240 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal MID13_02240 PF00355 Rieske [2Fe-2S] domain MID13_02245 PF00032 Cytochrome b(C-terminal)/b6/petD MID13_02245 PF00033 Cytochrome b/b6/petB MID13_02250 PF02167 Cytochrome C1 family MID13_02255 PF00043 Glutathione S-transferase, C-terminal domain MID13_02255 PF02798 Glutathione S-transferase, N-terminal domain MID13_02260 PF04386 Stringent starvation protein B MID13_02265 PF04972 BON domain MID13_02270 PF13580 SIS domain MID13_02275 PF02021 Uncharacterised protein family UPF0102 MID13_02280 PF04348 LppC putative lipoprotein MID13_02285 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MID13_02295 PF01795 MraW methylase family MID13_02300 PF04999 Cell division protein FtsL MID13_02305 PF00905 Penicillin binding protein transpeptidase domain MID13_02305 PF03717 Penicillin-binding Protein dimerisation domain MID13_02310 PF08245 Mur ligase middle domain MID13_02310 PF02875 Mur ligase family, glutamate ligase domain MID13_02310 PF01225 Mur ligase family, catalytic domain MID13_02315 PF01225 Mur ligase family, catalytic domain MID13_02315 PF02875 Mur ligase family, glutamate ligase domain MID13_02315 PF08245 Mur ligase middle domain MID13_02320 PF00953 Glycosyl transferase family 4 MID13_02320 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 MID13_02325 PF02875 Mur ligase family, glutamate ligase domain MID13_02325 PF08245 Mur ligase middle domain MID13_02330 PF01098 Cell cycle protein MID13_02335 PF04101 Glycosyltransferase family 28 C-terminal domain MID13_02335 PF03033 Glycosyltransferase family 28 N-terminal domain MID13_02340 PF01225 Mur ligase family, catalytic domain MID13_02340 PF02875 Mur ligase family, glutamate ligase domain MID13_02340 PF08245 Mur ligase middle domain MID13_02345 PF03799 Cell division protein FtsQ MID13_02345 PF08478 POTRA domain, FtsQ-type MID13_02350 PF02491 SHS2 domain inserted in FTSA MID13_02355 PF00091 Tubulin/FtsZ family, GTPase domain MID13_02355 PF12327 FtsZ family, C-terminal domain MID13_02360 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase MID13_02365 PF02810 SEC-C motif MID13_02365 PF07517 SecA DEAD-like domain MID13_02365 PF01043 SecA preprotein cross-linking domain MID13_02365 PF07516 SecA Wing and Scaffold domain MID13_02370 PF00293 NUDIX domain MID13_02375 PF05173 Dihydrodipicolinate reductase, C-terminus MID13_02375 PF01113 Dihydrodipicolinate reductase, N-terminus MID13_02380 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MID13_02380 PF00117 Glutamine amidotransferase class-I MID13_02385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MID13_02385 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MID13_02385 PF02142 MGS-like domain MID13_02390 PF01925 Sulfite exporter TauE/SafE MID13_02395 PF03466 LysR substrate binding domain MID13_02395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_02405 PF03458 UPF0126 domain MID13_02410 PF01497 Periplasmic binding protein MID13_02420 PF01048 Phosphorylase superfamily MID13_02430 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MID13_02430 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_02435 PF00310 Glutamine amidotransferases class-II MID13_02435 PF04898 Glutamate synthase central domain MID13_02435 PF01645 Conserved region in glutamate synthase MID13_02435 PF01493 GXGXG motif MID13_02440 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MID13_02440 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_02445 PF00310 Glutamine amidotransferases class-II MID13_02445 PF04898 Glutamate synthase central domain MID13_02445 PF01493 GXGXG motif MID13_02445 PF01645 Conserved region in glutamate synthase MID13_02450 PF16199 Radical_SAM C-terminal domain MID13_02450 PF04055 Radical SAM superfamily MID13_02455 PF00563 EAL domain MID13_02455 PF01590 GAF domain MID13_02455 PF00990 Diguanylate cyclase, GGDEF domain MID13_02455 PF00360 Phytochrome region MID13_02460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_02460 PF18415 Histidine kinase receptor ArcB trans-membrane domain MID13_02460 PF01627 Hpt domain MID13_02460 PF00989 PAS fold MID13_02460 PF00072 Response regulator receiver domain MID13_02460 PF00512 His Kinase A (phospho-acceptor) domain MID13_02470 PF00072 Response regulator receiver domain MID13_02470 PF00486 Transcriptional regulatory protein, C terminal MID13_02475 PF03737 Aldolase/RraA MID13_02485 PF00742 Homoserine dehydrogenase MID13_02485 PF01842 ACT domain MID13_02485 PF00696 Amino acid kinase family MID13_02485 PF13840 ACT domain MID13_02485 PF03447 Homoserine dehydrogenase, NAD binding domain MID13_02490 PF08544 GHMP kinases C terminal MID13_02490 PF00288 GHMP kinases N terminal domain MID13_02495 PF00291 Pyridoxal-phosphate dependent enzyme MID13_02495 PF14821 Threonine synthase N terminus MID13_02505 PF01228 Glycine radical MID13_02510 PF01261 Xylose isomerase-like TIM barrel MID13_02515 PF03167 Uracil DNA glycosylase superfamily MID13_02530 PF01235 Sodium:alanine symporter family MID13_02535 PF03883 Peroxide stress protein YaaA MID13_02540 PF00271 Helicase conserved C-terminal domain MID13_02540 PF00270 DEAD/DEAH box helicase MID13_02545 PF05175 Methyltransferase small domain MID13_02550 PF05525 Branched-chain amino acid transport protein MID13_02555 PF00258 Flavodoxin MID13_02560 PF02899 Phage integrase, N-terminal SAM-like domain MID13_02560 PF00589 Phage integrase family MID13_02565 PF10411 Disulfide bond isomerase protein N-terminus MID13_02565 PF13098 Thioredoxin-like domain MID13_02570 PF01368 DHH family MID13_02570 PF02272 DHHA1 domain MID13_02570 PF17768 RecJ OB domain MID13_02580 PF01336 OB-fold nucleic acid binding domain MID13_02580 PF00152 tRNA synthetases class II (D, K and N) MID13_02585 PF06505 Activator of aromatic catabolism MID13_02585 PF00158 Sigma-54 interaction domain MID13_02585 PF02830 V4R domain MID13_02585 PF02954 Bacterial regulatory protein, Fis family MID13_02600 PF02976 DNA mismatch repair enzyme MutH MID13_02605 PF00293 NUDIX domain MID13_02610 PF02896 PEP-utilising enzyme, TIM barrel domain MID13_02610 PF00391 PEP-utilising enzyme, mobile domain MID13_02610 PF05524 PEP-utilising enzyme, N-terminal MID13_02610 PF01590 GAF domain MID13_02615 PF01925 Sulfite exporter TauE/SafE MID13_02620 PF01790 Prolipoprotein diacylglyceryl transferase MID13_02625 PF00303 Thymidylate synthase MID13_02640 PF02690 Na+/Pi-cotransporter MID13_02645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_02645 PF03466 LysR substrate binding domain MID13_02650 PF01022 Bacterial regulatory protein, arsR family MID13_02655 PF01649 Ribosomal protein S20 MID13_02660 PF03023 Lipid II flippase MurJ MID13_02665 PF01687 Riboflavin kinase MID13_02665 PF06574 FAD synthetase MID13_02670 PF00133 tRNA synthetases class I (I, L, M and V) MID13_02670 PF06827 Zinc finger found in FPG and IleRS MID13_02670 PF08264 Anticodon-binding domain of tRNA MID13_02675 PF01252 Signal peptidase (SPase) II MID13_02680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MID13_02685 PF02401 LytB protein MID13_02690 PF00072 Response regulator receiver domain MID13_02690 PF04397 LytTr DNA-binding domain MID13_02695 PF06580 Histidine kinase MID13_02695 PF07694 5TMR of 5TMR-LYT MID13_02700 PF02554 Carbon starvation protein CstA MID13_02710 PF13580 SIS domain MID13_02715 PF03702 Anhydro-N-acetylmuramic acid kinase MID13_02720 PF00933 Glycosyl hydrolase family 3 N terminal domain MID13_02725 PF00793 DAHP synthetase I family MID13_02730 PF01817 Chorismate mutase type II MID13_02730 PF02153 Prephenate dehydrogenase MID13_02735 PF04225 Opacity-associated protein A LysM-like domain MID13_02735 PF01551 Peptidase family M23 MID13_02740 PF07238 PilZ domain MID13_02745 PF00005 ABC transporter MID13_02745 PF12848 ABC transporter MID13_02750 PF14718 Soluble lytic murein transglycosylase L domain MID13_02750 PF01464 Transglycosylase SLT domain MID13_02755 PF01371 Trp repressor protein MID13_02760 PF01931 Protein of unknown function DUF84 MID13_02765 PF00563 EAL domain MID13_02765 PF00990 Diguanylate cyclase, GGDEF domain MID13_02770 PF01817 Chorismate mutase type II MID13_02770 PF00800 Prephenate dehydratase MID13_02775 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MID13_02780 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID13_02780 PF01464 Transglycosylase SLT domain MID13_02785 PF13525 Outer membrane lipoprotein MID13_02790 PF01479 S4 domain MID13_02790 PF00849 RNA pseudouridylate synthase MID13_02795 PF02578 Multi-copper polyphenol oxidoreductase laccase MID13_02800 PF10431 C-terminal, D2-small domain, of ClpB protein MID13_02800 PF07724 AAA domain (Cdc48 subfamily) MID13_02800 PF17871 AAA lid domain MID13_02800 PF00004 ATPase family associated with various cellular activities (AAA) MID13_02800 PF02861 Clp amino terminal domain, pathogenicity island component MID13_02835 PF03411 Penicillin-insensitive murein endopeptidase MID13_02845 PF12838 4Fe-4S dicluster domain MID13_02850 PF16325 Peptidase family U32 C-terminal domain MID13_02850 PF01136 Peptidase family U32 MID13_02855 PF04381 Putative exonuclease, RdgC MID13_02860 PF00072 Response regulator receiver domain MID13_02860 PF00486 Transcriptional regulatory protein, C terminal MID13_02865 PF00512 His Kinase A (phospho-acceptor) domain MID13_02865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_02865 PF00989 PAS fold MID13_02865 PF11808 Phosphate regulon sensor protein PhoR MID13_02870 PF12849 PBP superfamily domain MID13_02875 PF02541 Ppx/GppA phosphatase family MID13_02880 PF02503 Polyphosphate kinase middle domain MID13_02880 PF13090 Polyphosphate kinase C-terminal domain 2 MID13_02880 PF17941 Polyphosphate kinase C-terminal domain 1 MID13_02880 PF13089 Polyphosphate kinase N-terminal domain MID13_02885 PF00528 Binding-protein-dependent transport system inner membrane component MID13_02890 PF00528 Binding-protein-dependent transport system inner membrane component MID13_02895 PF00005 ABC transporter MID13_02900 PF01895 PhoU domain MID13_02915 PF03466 LysR substrate binding domain MID13_02915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_02920 PF03932 CutC family MID13_02925 PF00578 AhpC/TSA family MID13_02925 PF10417 C-terminal domain of 1-Cys peroxiredoxin MID13_02930 PF03466 LysR substrate binding domain MID13_02930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_02935 PF00571 CBS domain MID13_02940 PF02547 Queuosine biosynthesis protein MID13_02945 PF01702 Queuine tRNA-ribosyltransferase MID13_02950 PF02699 Preprotein translocase subunit MID13_02955 PF02355 Protein export membrane protein MID13_02955 PF13721 SecD export protein N-terminal TM region MID13_02955 PF07549 SecD/SecF GG Motif MID13_02960 PF07549 SecD/SecF GG Motif MID13_02960 PF02355 Protein export membrane protein MID13_02965 PF00459 Inositol monophosphatase family MID13_02970 PF00588 SpoU rRNA Methylase family MID13_02975 PF02082 Transcriptional regulator MID13_02980 PF00266 Aminotransferase class-V MID13_02985 PF01592 NifU-like N terminal domain MID13_02990 PF01521 Iron-sulphur cluster biosynthesis MID13_02995 PF00226 DnaJ domain MID13_02995 PF07743 HSCB C-terminal oligomerisation domain MID13_03000 PF00012 Hsp70 protein MID13_03005 PF00111 2Fe-2S iron-sulfur cluster binding domain MID13_03010 PF04384 Iron-sulphur cluster assembly MID13_03015 PF00883 Cytosol aminopeptidase family, catalytic domain MID13_03015 PF12404 Peptidase MID13_03020 PF00334 Nucleoside diphosphate kinase MID13_03025 PF04055 Radical SAM superfamily MID13_03030 PF13464 Domain of unknown function (DUF4115) MID13_03035 PF04551 GcpE protein MID13_03040 PF03129 Anticodon binding domain MID13_03040 PF13393 Histidyl-tRNA synthetase MID13_03045 PF09976 Tetratricopeptide repeat-like domain MID13_03050 PF13360 PQQ-like domain MID13_03055 PF01926 50S ribosome-binding GTPase MID13_03055 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MID13_03065 PF08448 PAS fold MID13_03065 PF00990 Diguanylate cyclase, GGDEF domain MID13_03075 PF13742 OB-fold nucleic acid binding domain MID13_03075 PF02601 Exonuclease VII, large subunit MID13_03080 PF00571 CBS domain MID13_03080 PF00478 IMP dehydrogenase / GMP reductase domain MID13_03085 PF02540 NAD synthase MID13_03085 PF00117 Glutamine amidotransferase class-I MID13_03085 PF00958 GMP synthase C terminal domain MID13_03090 PF06483 Chitinase C MID13_03090 PF00704 Glycosyl hydrolases family 18 MID13_03095 PF03553 Na+/H+ antiporter family MID13_03100 PF01184 GPR1/FUN34/yaaH family MID13_03105 PF01235 Sodium:alanine symporter family MID13_03110 PF10996 Beta-Casp domain MID13_03110 PF00753 Metallo-beta-lactamase superfamily MID13_03110 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MID13_03115 PF01553 Acyltransferase MID13_03140 PF18030 RimK PreATP-grasp domain MID13_03140 PF08443 RimK-like ATP-grasp domain MID13_03150 PF01668 SmpB protein MID13_03155 PF03364 Polyketide cyclase / dehydrase and lipid transport MID13_03160 PF03658 RnfH family Ubiquitin MID13_03165 PF04355 SmpA / OmlA family MID13_03170 PF02463 RecF/RecN/SMC N terminal domain MID13_03175 PF01513 ATP-NAD kinase MID13_03180 PF01025 GrpE MID13_03185 PF00375 Sodium:dicarboxylate symporter family MID13_03190 PF00012 Hsp70 protein MID13_03195 PF00226 DnaJ domain MID13_03195 PF00684 DnaJ central domain MID13_03195 PF01556 DnaJ C terminal domain MID13_03200 PF07963 Prokaryotic N-terminal methylation motif MID13_03200 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor MID13_03225 PF03806 AbgT putative transporter family MID13_03230 PF03471 Transporter associated domain MID13_03230 PF01595 Cyclin M transmembrane N-terminal domain MID13_03230 PF00571 CBS domain MID13_03240 PF14437 MafB19-like deaminase MID13_03245 PF01464 Transglycosylase SLT domain MID13_03245 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID13_03250 PF02769 AIR synthase related protein, C-terminal domain MID13_03250 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MID13_03250 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal MID13_03260 PF14602 Hexapeptide repeat of succinyl-transferase MID13_03260 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle MID13_03265 PF02872 5'-nucleotidase, C-terminal domain MID13_03265 PF00149 Calcineurin-like phosphoesterase MID13_03270 PF01914 MarC family integral membrane protein MID13_03285 PF07130 YebG protein MID13_03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_03290 PF03466 LysR substrate binding domain MID13_03300 PF17946 RecC C-terminal domain MID13_03305 PF12705 PD-(D/E)XK nuclease superfamily MID13_03305 PF00580 UvrD/REP helicase N-terminal domain MID13_03305 PF13361 UvrD-like helicase C-terminal domain MID13_03310 PF13538 UvrD-like helicase C-terminal domain MID13_03320 PF00696 Amino acid kinase family MID13_03320 PF00583 Acetyltransferase (GNAT) family MID13_03330 PF03562 MltA specific insert domain MID13_03330 PF06725 3D domain MID13_03335 PF00899 ThiF family MID13_03340 PF02657 Fe-S metabolism associated domain MID13_03350 PF00266 Aminotransferase class-V MID13_03355 PF02558 Ketopantoate reductase PanE/ApbA MID13_03355 PF08546 Ketopantoate reductase PanE/ApbA C terminal MID13_03360 PF03502 Nucleoside-specific channel-forming protein, Tsx MID13_03370 PF07690 Major Facilitator Superfamily MID13_03375 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MID13_03385 PF05175 Methyltransferase small domain MID13_03390 PF01722 BolA-like protein MID13_03395 PF11973 NQRA C-terminal domain MID13_03395 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) MID13_03400 PF03116 NQR2, RnfD, RnfE family MID13_03405 PF04205 FMN-binding domain MID13_03410 PF02508 Rnf-Nqr subunit, membrane protein MID13_03415 PF02508 Rnf-Nqr subunit, membrane protein MID13_03420 PF00970 Oxidoreductase FAD-binding domain MID13_03420 PF00111 2Fe-2S iron-sulfur cluster binding domain MID13_03420 PF00175 Oxidoreductase NAD-binding domain MID13_03425 PF02424 ApbE family MID13_03430 PF04400 (Na+)-NQR maturation NqrM MID13_03435 PF00072 Response regulator receiver domain MID13_03435 PF00990 Diguanylate cyclase, GGDEF domain MID13_03440 PF00817 impB/mucB/samB family MID13_03440 PF11799 impB/mucB/samB family C-terminal domain MID13_03440 PF11798 IMS family HHH motif MID13_03445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_03450 PF00270 DEAD/DEAH box helicase MID13_03450 PF00570 HRDC domain MID13_03450 PF16124 RecQ zinc-binding MID13_03450 PF09382 RQC domain MID13_03450 PF00271 Helicase conserved C-terminal domain MID13_03465 PF00209 Sodium:neurotransmitter symporter family MID13_03470 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family MID13_03470 PF04055 Radical SAM superfamily MID13_03475 PF03099 Biotin/lipoate A/B protein ligase family MID13_03480 PF04359 Protein of unknown function (DUF493) MID13_03485 PF00768 D-alanyl-D-alanine carboxypeptidase MID13_03485 PF07943 Penicillin-binding protein 5, C-terminal domain MID13_03490 PF03330 Lytic transglycolase MID13_03490 PF05036 Sporulation related domain MID13_03495 PF01098 Cell cycle protein MID13_03500 PF03717 Penicillin-binding Protein dimerisation domain MID13_03500 PF00905 Penicillin binding protein transpeptidase domain MID13_03505 PF02590 Predicted SPOUT methyltransferase MID13_03515 PF14840 Processivity clamp loader gamma complex DNA pol III C-term MID13_03515 PF06144 DNA polymerase III, delta subunit MID13_03520 PF04390 Lipopolysaccharide-assembly MID13_03525 PF00133 tRNA synthetases class I (I, L, M and V) MID13_03525 PF13603 Leucyl-tRNA synthetase, Domain 2 MID13_03525 PF08264 Anticodon-binding domain of tRNA MID13_03530 PF07295 Zinc-ribbon containing domain MID13_03535 PF00795 Carbon-nitrogen hydrolase MID13_03540 PF00571 CBS domain MID13_03540 PF03471 Transporter associated domain MID13_03545 PF02130 Uncharacterized protein family UPF0054 MID13_03550 PF02562 PhoH-like protein MID13_03555 PF00919 Uncharacterized protein family UPF0004 MID13_03555 PF01938 TRAM domain MID13_03555 PF04055 Radical SAM superfamily MID13_03560 PF01494 FAD binding domain MID13_03565 PF10282 Lactonase, 7-bladed beta-propeller MID13_03665 PF01926 50S ribosome-binding GTPase MID13_03665 PF06071 Protein of unknown function (DUF933) MID13_03670 PF01195 Peptidyl-tRNA hydrolase MID13_03675 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MID13_03675 PF14572 Phosphoribosyl synthetase-associated domain MID13_03680 PF00288 GHMP kinases N terminal domain MID13_03680 PF08544 GHMP kinases C terminal MID13_03685 PF03550 Outer membrane lipoprotein LolB MID13_03690 PF01488 Shikimate / quinate 5-dehydrogenase MID13_03690 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain MID13_03690 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain MID13_03695 PF00472 RF-1 domain MID13_03695 PF03462 PCRF domain MID13_03700 PF13847 Methyltransferase domain MID13_03700 PF17827 PrmC N-terminal domain MID13_03705 PF04247 Invasion gene expression up-regulator, SirB MID13_03710 PF13369 Transglutaminase-like superfamily MID13_03715 PF00793 DAHP synthetase I family MID13_03720 PF02872 5'-nucleotidase, C-terminal domain MID13_03720 PF00149 Calcineurin-like phosphoesterase MID13_03725 PF04073 Aminoacyl-tRNA editing domain MID13_03730 PF00849 RNA pseudouridylate synthase MID13_03730 PF01479 S4 domain MID13_03735 PF01713 Smr domain MID13_03760 PF02838 Glycosyl hydrolase family 20, domain 2 MID13_03760 PF00728 Glycosyl hydrolase family 20, catalytic domain MID13_03760 PF03173 Putative carbohydrate binding domain MID13_03760 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain MID13_03775 PF00403 Heavy-metal-associated domain MID13_03780 PF00749 tRNA synthetases class I (E and Q), catalytic domain MID13_03785 PF02801 Beta-ketoacyl synthase, C-terminal domain MID13_03785 PF00109 Beta-ketoacyl synthase, N-terminal domain MID13_03800 PF00109 Beta-ketoacyl synthase, N-terminal domain MID13_03800 PF02801 Beta-ketoacyl synthase, C-terminal domain MID13_03825 PF00221 Aromatic amino acid lyase MID13_03830 PF00535 Glycosyl transferase family 2 MID13_03840 PF13193 AMP-binding enzyme C-terminal domain MID13_03840 PF00501 AMP-binding enzyme MID13_03850 PF00550 Phosphopantetheine attachment site MID13_03855 PF00550 Phosphopantetheine attachment site MID13_03880 PF04820 Tryptophan halogenase MID13_03915 PF13144 Chaperone for flagella basal body P-ring formation MID13_03920 PF01584 CheW-like domain MID13_03920 PF00072 Response regulator receiver domain MID13_03925 PF01739 CheR methyltransferase, SAM binding domain MID13_03925 PF03705 CheR methyltransferase, all-alpha domain MID13_03930 PF00460 Flagella basal body rod protein MID13_03935 PF00460 Flagella basal body rod protein MID13_03935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID13_03940 PF03963 Flagellar hook capping protein - N-terminal region MID13_03940 PF13861 FlgD Tudor-like domain MID13_03940 PF13860 FlgD Ig-like domain MID13_03945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID13_03945 PF07559 Flagellar basal body protein FlaE MID13_03945 PF00460 Flagella basal body rod protein MID13_03950 PF00460 Flagella basal body rod protein MID13_03950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID13_03955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID13_03955 PF00460 Flagella basal body rod protein MID13_03960 PF02107 Flagellar L-ring protein MID13_03965 PF02119 Flagellar P-ring protein MID13_03970 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase MID13_03970 PF10135 Rod binding protein MID13_03975 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID13_03975 PF07196 Flagellin hook IN motif MID13_03985 PF00669 Bacterial flagellin N-terminal helical region MID13_03985 PF00700 Bacterial flagellin C-terminal helical region MID13_03985 PF07196 Flagellin hook IN motif MID13_03990 PF00669 Bacterial flagellin N-terminal helical region MID13_03990 PF00700 Bacterial flagellin C-terminal helical region MID13_03990 PF07196 Flagellin hook IN motif MID13_03995 PF00669 Bacterial flagellin N-terminal helical region MID13_03995 PF00700 Bacterial flagellin C-terminal helical region MID13_03995 PF07196 Flagellin hook IN motif MID13_04000 PF03646 FlaG protein MID13_04005 PF07196 Flagellin hook IN motif MID13_04005 PF07195 Flagellar hook-associated protein 2 C-terminus MID13_04005 PF02465 Flagellar hook-associated protein 2 N-terminus MID13_04015 PF02561 Flagellar protein FliS MID13_04020 PF02954 Bacterial regulatory protein, Fis family MID13_04020 PF00158 Sigma-54 interaction domain MID13_04020 PF06490 Flagellar regulatory protein FleQ MID13_04025 PF00512 His Kinase A (phospho-acceptor) domain MID13_04025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_04025 PF13188 PAS domain MID13_04030 PF02954 Bacterial regulatory protein, Fis family MID13_04030 PF00072 Response regulator receiver domain MID13_04030 PF00158 Sigma-54 interaction domain MID13_04035 PF02049 Flagellar hook-basal body complex protein FliE MID13_04040 PF08345 Flagellar M-ring protein C-terminal MID13_04040 PF01514 Secretory protein of YscJ/FliF family MID13_04045 PF01706 FliG C-terminal domain MID13_04045 PF14842 FliG N-terminal domain MID13_04045 PF14841 FliG middle domain MID13_04055 PF18269 T3SS EscN ATPase C-terminal domain MID13_04055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MID13_04075 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MID13_04075 PF02154 Flagellar motor switch protein FliM MID13_04080 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MID13_04085 PF04347 Flagellar biosynthesis protein, FliO MID13_04090 PF00813 FliP family MID13_04095 PF01313 Bacterial export proteins, family 3 MID13_04100 PF01311 Bacterial export proteins, family 1 MID13_04105 PF01312 FlhB HrpN YscU SpaS Family MID13_04110 PF00771 FHIPEP family MID13_04115 PF00448 SRP54-type protein, GTPase domain MID13_04120 PF10609 NUBPL iron-transfer P-loop NTPase MID13_04125 PF04542 Sigma-70 region 2 MID13_04125 PF04539 Sigma-70 region 3 MID13_04125 PF04545 Sigma-70, region 4 MID13_04130 PF00072 Response regulator receiver domain MID13_04135 PF04344 Chemotaxis phosphatase, CheZ MID13_04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_04140 PF02895 Signal transducing histidine kinase, homodimeric domain MID13_04140 PF01627 Hpt domain MID13_04140 PF00072 Response regulator receiver domain MID13_04140 PF01584 CheW-like domain MID13_04145 PF01339 CheB methylesterase MID13_04145 PF00072 Response regulator receiver domain MID13_04150 PF13614 AAA domain MID13_04160 PF01584 CheW-like domain MID13_04170 PF00005 ABC transporter MID13_04175 PF03379 CcmB protein MID13_04180 PF01578 Cytochrome C assembly protein MID13_04185 PF04995 Heme exporter protein D (CcmD) MID13_04190 PF03100 CcmE MID13_04195 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal MID13_04195 PF01578 Cytochrome C assembly protein MID13_04200 PF08534 Redoxin MID13_04205 PF03918 Cytochrome C biogenesis protein MID13_04210 PF03918 Cytochrome C biogenesis protein MID13_04215 PF04333 MlaA lipoprotein MID13_04220 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) MID13_04225 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) MID13_04235 PF08281 Sigma-70, region 4 MID13_04235 PF04542 Sigma-70 region 2 MID13_04240 PF00108 Thiolase, N-terminal domain MID13_04240 PF02803 Thiolase, C-terminal domain MID13_04245 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MID13_04245 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MID13_04245 PF00378 Enoyl-CoA hydratase/isomerase MID13_04250 PF05193 Peptidase M16 inactive domain MID13_04250 PF00675 Insulinase (Peptidase family M16) MID13_04255 PF00300 Histidine phosphatase superfamily (branch 1) MID13_04260 PF01713 Smr domain MID13_04265 PF05175 Methyltransferase small domain MID13_04270 PF01810 LysE type translocator MID13_04275 PF02696 Uncharacterized ACR, YdiU/UPF0061 family MID13_04280 PF00072 Response regulator receiver domain MID13_04280 PF00486 Transcriptional regulatory protein, C terminal MID13_04285 PF00512 His Kinase A (phospho-acceptor) domain MID13_04285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_04285 PF00672 HAMP domain MID13_04290 PF01547 Bacterial extracellular solute-binding protein MID13_04295 PF00528 Binding-protein-dependent transport system inner membrane component MID13_04300 PF00528 Binding-protein-dependent transport system inner membrane component MID13_04305 PF17912 MalK OB fold domain MID13_04305 PF00005 ABC transporter MID13_04305 PF03459 TOBE domain MID13_04310 PF00082 Subtilase family MID13_04310 PF05922 Peptidase inhibitor I9 MID13_04315 PF16360 GTP-binding GTPase Middle Region MID13_04315 PF13167 GTP-binding GTPase N-terminal MID13_04315 PF01926 50S ribosome-binding GTPase MID13_04320 PF03060 Nitronate monooxygenase MID13_04320 PF00698 Acyl transferase domain MID13_04325 PF00550 Phosphopantetheine attachment site MID13_04325 PF14765 Polyketide synthase dehydratase MID13_04325 PF02801 Beta-ketoacyl synthase, C-terminal domain MID13_04325 PF08659 KR domain MID13_04325 PF00698 Acyl transferase domain MID13_04325 PF16197 Ketoacyl-synthetase C-terminal extension MID13_04325 PF00109 Beta-ketoacyl synthase, N-terminal domain MID13_04335 PF08659 KR domain MID13_04335 PF14765 Polyketide synthase dehydratase MID13_04335 PF00698 Acyl transferase domain MID13_04335 PF00109 Beta-ketoacyl synthase, N-terminal domain MID13_04335 PF16197 Ketoacyl-synthetase C-terminal extension MID13_04335 PF02801 Beta-ketoacyl synthase, C-terminal domain MID13_04335 PF00550 Phosphopantetheine attachment site MID13_04340 PF01648 4'-phosphopantetheinyl transferase superfamily MID13_04350 PF03480 Bacterial extracellular solute-binding protein, family 7 MID13_04355 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MID13_04360 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID13_04370 PF00072 Response regulator receiver domain MID13_04370 PF02954 Bacterial regulatory protein, Fis family MID13_04370 PF00158 Sigma-54 interaction domain MID13_04375 PF00512 His Kinase A (phospho-acceptor) domain MID13_04375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_04375 PF02743 Cache domain MID13_04380 PF05697 Bacterial trigger factor protein (TF) MID13_04380 PF05698 Bacterial trigger factor protein (TF) C-terminus MID13_04380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MID13_04385 PF00574 Clp protease MID13_04390 PF06689 ClpX C4-type zinc finger MID13_04390 PF10431 C-terminal, D2-small domain, of ClpB protein MID13_04390 PF07724 AAA domain (Cdc48 subfamily) MID13_04395 PF02190 ATP-dependent protease La (LON) substrate-binding domain MID13_04395 PF05362 Lon protease (S16) C-terminal proteolytic domain MID13_04395 PF00004 ATPase family associated with various cellular activities (AAA) MID13_04400 PF00216 Bacterial DNA-binding protein MID13_04405 PF13145 PPIC-type PPIASE domain MID13_04425 PF13286 Phosphohydrolase-associated domain MID13_04425 PF01966 HD domain MID13_04435 PF00155 Aminotransferase class I and II MID13_04440 PF00425 chorismate binding enzyme MID13_04445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID13_04445 PF16582 Middle domain of thiamine pyrophosphate MID13_04445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID13_04450 PF00561 alpha/beta hydrolase fold MID13_04455 PF00378 Enoyl-CoA hydratase/isomerase MID13_04460 PF13378 Enolase C-terminal domain-like MID13_04465 PF13193 AMP-binding enzyme C-terminal domain MID13_04465 PF00501 AMP-binding enzyme MID13_04470 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MID13_04470 PF00367 phosphotransferase system, EIIB MID13_04470 PF02378 Phosphotransferase system, EIIC MID13_04475 PF03466 LysR substrate binding domain MID13_04475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_04485 PF03601 Conserved hypothetical protein 698 MID13_04490 PF07690 Major Facilitator Superfamily MID13_04545 PF13533 Biotin-lipoyl like MID13_04550 PF00873 AcrB/AcrD/AcrF family MID13_04565 PF00291 Pyridoxal-phosphate dependent enzyme MID13_04570 PF13404 AsnC-type helix-turn-helix domain MID13_04570 PF01037 Lrp/AsnC ligand binding domain MID13_04585 PF09619 Type III secretion system lipoprotein chaperone (YscW) MID13_04590 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MID13_04605 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID13_04635 PF01693 Caulimovirus viroplasmin MID13_04645 PF00814 Glycoprotease family MID13_04645 PF00583 Acetyltransferase (GNAT) family MID13_04650 PF03109 ABC1 family MID13_04665 PF00158 Sigma-54 interaction domain MID13_04665 PF00072 Response regulator receiver domain MID13_04665 PF02954 Bacterial regulatory protein, Fis family MID13_04675 PF01645 Conserved region in glutamate synthase MID13_04680 PF00797 N-acetyltransferase MID13_04695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_04695 PF03466 LysR substrate binding domain MID13_04700 PF00376 MerR family regulatory protein MID13_04700 PF09278 MerR, DNA binding MID13_04705 PF04794 YdjC-like protein MID13_04710 PF02056 Family 4 glycosyl hydrolase MID13_04710 PF11975 Family 4 glycosyl hydrolase C-terminal domain MID13_04715 PF03466 LysR substrate binding domain MID13_04715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_04740 PF00884 Sulfatase MID13_04745 PF00356 Bacterial regulatory proteins, lacI family MID13_04760 PF07690 Major Facilitator Superfamily MID13_04765 PF00474 Sodium:solute symporter family MID13_04770 PF03315 Serine dehydratase beta chain MID13_04770 PF03313 Serine dehydratase alpha chain MID13_04775 PF01037 Lrp/AsnC ligand binding domain MID13_04780 PF01810 LysE type translocator MID13_04785 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_04785 PF13192 Thioredoxin domain MID13_04790 PF00578 AhpC/TSA family MID13_04790 PF10417 C-terminal domain of 1-Cys peroxiredoxin MID13_04800 PF12801 4Fe-4S binding domain MID13_04805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_04805 PF03466 LysR substrate binding domain MID13_04820 PF03330 Lytic transglycolase MID13_04820 PF05036 Sporulation related domain MID13_04825 PF01368 DHH family MID13_04825 PF02833 DHHA2 domain MID13_04835 PF00583 Acetyltransferase (GNAT) family MID13_04840 PF00440 Bacterial regulatory proteins, tetR family MID13_04870 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_04870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID13_04875 PF00375 Sodium:dicarboxylate symporter family MID13_04880 PF13382 Adenine deaminase C-terminal domain MID13_04880 PF01979 Amidohydrolase family MID13_04895 PF01979 Amidohydrolase family MID13_04910 PF08212 Lipocalin-like domain MID13_04920 PF08803 Putative mono-oxygenase ydhR MID13_04925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_04925 PF03466 LysR substrate binding domain MID13_04940 PF00873 AcrB/AcrD/AcrF family MID13_04945 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MID13_04945 PF06481 COX Aromatic Rich Motif MID13_04950 PF00115 Cytochrome C and Quinol oxidase polypeptide I MID13_04955 PF00510 Cytochrome c oxidase subunit III MID13_04960 PF03626 Prokaryotic Cytochrome C oxidase subunit IV MID13_04965 PF01040 UbiA prenyltransferase family MID13_04975 PF14864 Alkyl sulfatase C-terminal MID13_04975 PF14863 Alkyl sulfatase dimerisation MID13_04975 PF00753 Metallo-beta-lactamase superfamily MID13_04990 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) MID13_04995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_04995 PF03466 LysR substrate binding domain MID13_05000 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID13_05005 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MID13_05035 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MID13_05040 PF01323 DSBA-like thioredoxin domain MID13_05055 PF00591 Glycosyl transferase family, a/b domain MID13_05055 PF02885 Glycosyl transferase family, helical bundle domain MID13_05070 PF00571 CBS domain MID13_05070 PF01743 Poly A polymerase head domain MID13_05075 PF01554 MatE MID13_05080 PF00403 Heavy-metal-associated domain MID13_05085 PF01048 Phosphorylase superfamily MID13_05095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_05095 PF00672 HAMP domain MID13_05100 PF01230 HIT domain MID13_05115 PF08139 Prokaryotic membrane lipoprotein lipid attachment site MID13_05115 PF13036 Peptidoglycan-synthase activator LpoB MID13_05125 PF05728 Uncharacterised protein family (UPF0227) MID13_05130 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_05145 PF02559 CarD-like/TRCF domain MID13_05145 PF00270 DEAD/DEAH box helicase MID13_05145 PF00271 Helicase conserved C-terminal domain MID13_05145 PF03461 TRCF domain MID13_05145 PF17757 UvrB interaction domain MID13_05155 PF12704 MacB-like periplasmic core domain MID13_05155 PF02687 FtsX-like permease family MID13_05160 PF00005 ABC transporter MID13_05165 PF02687 FtsX-like permease family MID13_05165 PF12704 MacB-like periplasmic core domain MID13_05175 PF03772 Competence protein MID13_05175 PF00753 Metallo-beta-lactamase superfamily MID13_05180 PF00005 ABC transporter MID13_05180 PF00664 ABC transporter transmembrane region MID13_05185 PF02606 Tetraacyldisaccharide-1-P 4'-kinase MID13_05190 PF03966 Trm112p-like protein MID13_05195 PF02348 Cytidylyltransferase MID13_05200 PF02224 Cytidylate kinase MID13_05205 PF00575 S1 RNA binding domain MID13_05210 PF00216 Bacterial DNA-binding protein MID13_05215 PF06305 Lipopolysaccharide assembly protein A domain MID13_05220 PF18073 Rubredoxin metal binding domain MID13_05225 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MID13_05230 PF00528 Binding-protein-dependent transport system inner membrane component MID13_05235 PF00528 Binding-protein-dependent transport system inner membrane component MID13_05235 PF12911 N-terminal TM domain of oligopeptide transport permease C MID13_05245 PF00005 ABC transporter MID13_05245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_05250 PF00005 ABC transporter MID13_05250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_05265 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) MID13_05275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_05275 PF03466 LysR substrate binding domain MID13_05285 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MID13_05285 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MID13_05290 PF01037 Lrp/AsnC ligand binding domain MID13_05295 PF13491 4TM region of DNA translocase FtsK/SpoIIIE MID13_05295 PF17854 FtsK alpha domain MID13_05295 PF01580 FtsK/SpoIIIE family MID13_05295 PF09397 Ftsk gamma domain MID13_05300 PF03548 Outer membrane lipoprotein carrier protein LolA MID13_05305 PF00004 ATPase family associated with various cellular activities (AAA) MID13_05305 PF16193 AAA C-terminal domain MID13_05305 PF12002 MgsA AAA+ ATPase C terminal MID13_05310 PF02403 Seryl-tRNA synthetase N-terminal domain MID13_05310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MID13_05315 PF01258 Prokaryotic dksA/traR C4-type zinc finger MID13_05320 PF00202 Aminotransferase class-III MID13_05325 PF06968 Biotin and Thiamin Synthesis associated domain MID13_05325 PF04055 Radical SAM superfamily MID13_05330 PF00155 Aminotransferase class I and II MID13_05335 PF08241 Methyltransferase domain MID13_05350 PF01435 Peptidase family M48 MID13_05355 PF08328 Adenylosuccinate lyase C-terminal MID13_05355 PF00206 Lyase MID13_05360 PF04356 Protein of unknown function (DUF489) MID13_05375 PF00294 pfkB family carbohydrate kinase MID13_05380 PF00816 H-NS histone family MID13_05385 PF03553 Na+/H+ antiporter family MID13_05390 PF01634 ATP phosphoribosyltransferase MID13_05390 PF08029 HisG, C-terminal domain MID13_05395 PF00815 Histidinol dehydrogenase MID13_05400 PF00155 Aminotransferase class I and II MID13_05405 PF00475 Imidazoleglycerol-phosphate dehydratase MID13_05405 PF08645 Polynucleotide kinase 3 phosphatase MID13_05410 PF00117 Glutamine amidotransferase class-I MID13_05415 PF00977 Histidine biosynthesis protein MID13_05420 PF00977 Histidine biosynthesis protein MID13_05425 PF01502 Phosphoribosyl-AMP cyclohydrolase MID13_05425 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase MID13_05430 PF02810 SEC-C motif MID13_05435 PF00563 EAL domain MID13_05435 PF08668 HDOD domain MID13_05440 PF00149 Calcineurin-like phosphoesterase MID13_05445 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MID13_05450 PF01406 tRNA synthetases class I (C) catalytic domain MID13_05450 PF09190 DALR domain MID13_05455 PF00265 Thymidine kinase MID13_05460 PF02698 DUF218 domain MID13_05480 PF01226 Formate/nitrite transporter MID13_05485 PF03649 Uncharacterised protein family (UPF0014) MID13_05490 PF06796 Periplasmic nitrate reductase protein NapE MID13_05495 PF03264 NapC/NirT cytochrome c family, N-terminal region MID13_05500 PF01568 Molydopterin dinucleotide binding domain MID13_05500 PF00384 Molybdopterin oxidoreductase MID13_05500 PF18364 Molybdopterin oxidoreductase N-terminal domain MID13_05510 PF02833 DHHA2 domain MID13_05510 PF01368 DHH family MID13_05525 PF00005 ABC transporter MID13_05530 PF00005 ABC transporter MID13_05530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_05535 PF00528 Binding-protein-dependent transport system inner membrane component MID13_05535 PF12911 N-terminal TM domain of oligopeptide transport permease C MID13_05540 PF00528 Binding-protein-dependent transport system inner membrane component MID13_05545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID13_05550 PF00158 Sigma-54 interaction domain MID13_05550 PF02954 Bacterial regulatory protein, Fis family MID13_05555 PF04012 PspA/IM30 family MID13_05560 PF06667 Phage shock protein B MID13_05565 PF04024 PspC domain MID13_05570 PF00529 HlyD membrane-fusion protein of T1SS MID13_05570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID13_05575 PF13533 Biotin-lipoyl like MID13_05580 PF00873 AcrB/AcrD/AcrF family MID13_05585 PF03352 Methyladenine glycosylase MID13_05600 PF01053 Cys/Met metabolism PLP-dependent enzyme MID13_05605 PF13091 PLD-like domain MID13_05605 PF13396 Phospholipase_D-nuclease N-terminal MID13_05610 PF00209 Sodium:neurotransmitter symporter family MID13_05615 PF12729 Four helix bundle sensory module for signal transduction MID13_05615 PF00672 HAMP domain MID13_05615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_05620 PF00849 RNA pseudouridylate synthase MID13_05625 PF10672 S-adenosylmethionine-dependent methyltransferase MID13_05625 PF02926 THUMP domain MID13_05625 PF01170 Putative RNA methylase family UPF0020 MID13_05630 PF01066 CDP-alcohol phosphatidyltransferase MID13_05635 PF00005 ABC transporter MID13_05640 PF00528 Binding-protein-dependent transport system inner membrane component MID13_05645 PF13416 Bacterial extracellular solute-binding protein MID13_05655 PF06945 Protein of unknown function (DUF1289) MID13_05665 PF01910 Thiamine-binding protein MID13_05675 PF00270 DEAD/DEAH box helicase MID13_05675 PF00271 Helicase conserved C-terminal domain MID13_05680 PF01810 LysE type translocator MID13_05690 PF18027 Cytosolic carboxypeptidase N-terminal domain MID13_05690 PF00246 Zinc carboxypeptidase MID13_05715 PF00005 ABC transporter MID13_05715 PF00571 CBS domain MID13_05720 PF00528 Binding-protein-dependent transport system inner membrane component MID13_05725 PF04069 Substrate binding domain of ABC-type glycine betaine transport system MID13_05735 PF03466 LysR substrate binding domain MID13_05735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_05770 PF01810 LysE type translocator MID13_05775 PF13302 Acetyltransferase (GNAT) domain MID13_05840 PF01548 Transposase MID13_05840 PF02371 Transposase IS116/IS110/IS902 family MID13_05880 PF01386 Ribosomal L25p family MID13_05885 PF00535 Glycosyl transferase family 2 MID13_05885 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 MID13_05890 PF09335 SNARE associated Golgi protein MID13_05905 PF02472 Biopolymer transport protein ExbD/TolR MID13_05910 PF01618 MotA/TolQ/ExbB proton channel family MID13_05915 PF01618 MotA/TolQ/ExbB proton channel family MID13_05925 PF07715 TonB-dependent Receptor Plug Domain MID13_05930 PF06472 ABC transporter transmembrane region 2 MID13_05930 PF00005 ABC transporter MID13_05935 PF05193 Peptidase M16 inactive domain MID13_05935 PF00675 Insulinase (Peptidase family M16) MID13_05945 PF00512 His Kinase A (phospho-acceptor) domain MID13_05945 PF00672 HAMP domain MID13_05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_05950 PF00072 Response regulator receiver domain MID13_05950 PF00486 Transcriptional regulatory protein, C terminal MID13_05960 PF00271 Helicase conserved C-terminal domain MID13_05960 PF04851 Type III restriction enzyme, res subunit MID13_05965 PF00849 RNA pseudouridylate synthase MID13_05965 PF01479 S4 domain MID13_05970 PF07690 Major Facilitator Superfamily MID13_05980 PF11066 Protein of unknown function (DUF2867) MID13_05980 PF13460 NAD(P)H-binding MID13_05985 PF03150 Di-haem cytochrome c peroxidase MID13_05985 PF14376 Haem-binding domain MID13_05985 PF00034 Cytochrome c MID13_05990 PF01554 MatE MID13_05995 PF00005 ABC transporter MID13_06010 PF06965 Na+/H+ antiporter 1 MID13_06030 PF16295 Tetracyclin repressor-like, C-terminal domain MID13_06030 PF00440 Bacterial regulatory proteins, tetR family MID13_06035 PF09317 Domain of unknown function (DUF1974) MID13_06035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID13_06035 PF02770 Acyl-CoA dehydrogenase, middle domain MID13_06035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID13_06040 PF12241 Trans-2-enoyl-CoA reductase catalytic region MID13_06040 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase MID13_06040 PF07055 Enoyl reductase FAD binding domain MID13_06045 PF02080 TrkA-C domain MID13_06045 PF06826 Predicted Permease Membrane Region MID13_06050 PF00462 Glutaredoxin MID13_06055 PF00465 Iron-containing alcohol dehydrogenase MID13_06060 PF01418 Helix-turn-helix domain, rpiR family MID13_06060 PF01380 SIS domain MID13_06065 PF00282 Pyridoxal-dependent decarboxylase conserved domain MID13_06075 PF03956 Lysine exporter LysO MID13_06085 PF04993 TfoX N-terminal domain MID13_06085 PF04994 TfoX C-terminal domain MID13_06095 PF02954 Bacterial regulatory protein, Fis family MID13_06095 PF00072 Response regulator receiver domain MID13_06095 PF00158 Sigma-54 interaction domain MID13_06100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_06100 PF00512 His Kinase A (phospho-acceptor) domain MID13_06110 PF00266 Aminotransferase class-V MID13_06130 PF03473 MOSC domain MID13_06130 PF03475 3-alpha domain MID13_06150 PF00155 Aminotransferase class I and II MID13_06155 PF00672 HAMP domain MID13_06155 PF01966 HD domain MID13_06165 PF00155 Aminotransferase class I and II MID13_06165 PF00392 Bacterial regulatory proteins, gntR family MID13_06185 PF01336 OB-fold nucleic acid binding domain MID13_06185 PF00152 tRNA synthetases class II (D, K and N) MID13_06190 PF00916 Sulfate permease family MID13_06190 PF01740 STAS domain MID13_06195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_06195 PF00672 HAMP domain MID13_06195 PF12729 Four helix bundle sensory module for signal transduction MID13_06205 PF03222 Tryptophan/tyrosine permease family MID13_06210 PF03315 Serine dehydratase beta chain MID13_06210 PF03313 Serine dehydratase alpha chain MID13_06215 PF03222 Tryptophan/tyrosine permease family MID13_06220 PF00293 NUDIX domain MID13_06230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_06230 PF00512 His Kinase A (phospho-acceptor) domain MID13_06230 PF09308 LuxQ, periplasmic MID13_06230 PF00072 Response regulator receiver domain MID13_06235 PF00425 chorismate binding enzyme MID13_06235 PF04715 Anthranilate synthase component I, N terminal region MID13_06250 PF04317 YcjX-like family, DUF463 MID13_06255 PF05128 Domain of unknown function (DUF697) MID13_06260 PF00158 Sigma-54 interaction domain MID13_06260 PF18024 Helix-turn-helix domain MID13_06265 PF13302 Acetyltransferase (GNAT) domain MID13_06275 PF00990 Diguanylate cyclase, GGDEF domain MID13_06275 PF13185 GAF domain MID13_06285 PF00012 Hsp70 protein MID13_06290 PF00012 Hsp70 protein MID13_06300 PF00990 Diguanylate cyclase, GGDEF domain MID13_06300 PF08448 PAS fold MID13_06320 PF00486 Transcriptional regulatory protein, C terminal MID13_06350 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MID13_06350 PF04408 Helicase associated domain (HA2) MID13_06350 PF00270 DEAD/DEAH box helicase MID13_06350 PF11898 Domain of unknown function (DUF3418) MID13_06350 PF00271 Helicase conserved C-terminal domain MID13_06395 PF00990 Diguanylate cyclase, GGDEF domain MID13_06395 PF00072 Response regulator receiver domain MID13_06400 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MID13_06400 PF01409 tRNA synthetases class II core domain (F) MID13_06405 PF03483 B3/4 domain MID13_06405 PF03484 tRNA synthetase B5 domain MID13_06405 PF03147 Ferredoxin-fold anticodon binding domain MID13_06405 PF01588 Putative tRNA binding domain MID13_06405 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MID13_06425 PF00561 alpha/beta hydrolase fold MID13_06485 PF01734 Patatin-like phospholipase MID13_06500 PF01037 Lrp/AsnC ligand binding domain MID13_06505 PF01053 Cys/Met metabolism PLP-dependent enzyme MID13_06525 PF12805 FUSC-like inner membrane protein yccS MID13_06550 PF00072 Response regulator receiver domain MID13_06550 PF00486 Transcriptional regulatory protein, C terminal MID13_06555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_06555 PF00512 His Kinase A (phospho-acceptor) domain MID13_06555 PF07689 KaiB domain MID13_06570 PF02001 Protein of unknown function DUF134 MID13_06580 PF12833 Helix-turn-helix domain MID13_06585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID13_06600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_06600 PF12729 Four helix bundle sensory module for signal transduction MID13_06600 PF00672 HAMP domain MID13_06605 PF04973 Nicotinamide mononucleotide transporter MID13_06610 PF01048 Phosphorylase superfamily MID13_06625 PF00216 Bacterial DNA-binding protein MID13_06635 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MID13_06635 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_06645 PF00672 HAMP domain MID13_06645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_06645 PF17200 Single Cache domain 2 MID13_06655 PF03466 LysR substrate binding domain MID13_06655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_06665 PF02668 Taurine catabolism dioxygenase TauD, TfdA family MID13_06670 PF00072 Response regulator receiver domain MID13_06670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_06675 PF00155 Aminotransferase class I and II MID13_06680 PF00392 Bacterial regulatory proteins, gntR family MID13_06680 PF00155 Aminotransferase class I and II MID13_06700 PF00216 Bacterial DNA-binding protein MID13_06730 PF05724 Thiopurine S-methyltransferase (TPMT) MID13_06735 PF02222 ATP-grasp domain MID13_06740 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region MID13_06740 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MID13_06745 PF04172 LrgB-like family MID13_06750 PF03788 LrgA family MID13_06755 PF00929 Exonuclease MID13_06755 PF08411 Exonuclease C-terminal MID13_06780 PF04116 Fatty acid hydroxylase superfamily MID13_06800 PF03372 Endonuclease/Exonuclease/phosphatase family MID13_06815 PF03440 Aerolysin/Pertussis toxin (APT) domain MID13_06815 PF01117 Aerolysin toxin MID13_06825 PF03466 LysR substrate binding domain MID13_06825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_06830 PF00248 Aldo/keto reductase family MID13_06835 PF03928 Haem-degrading MID13_06840 PF00375 Sodium:dicarboxylate symporter family MID13_06845 PF13460 NAD(P)H-binding MID13_06850 PF01613 Flavin reductase like domain MID13_06855 PF02277 Phosphoribosyltransferase MID13_06860 PF02654 Cobalamin-5-phosphate synthase MID13_06865 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase MID13_06870 PF00300 Histidine phosphatase superfamily (branch 1) MID13_06880 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family MID13_06885 PF01032 FecCD transport family MID13_06890 PF00005 ABC transporter MID13_06900 PF18416 N-acetylglucosamine binding protein domain 2 MID13_06900 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading MID13_06915 PF00583 Acetyltransferase (GNAT) family MID13_06925 PF00990 Diguanylate cyclase, GGDEF domain MID13_06935 PF07690 Major Facilitator Superfamily MID13_06940 PF03466 LysR substrate binding domain MID13_06940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_06950 PF01863 Protein of unknown function DUF45 MID13_06955 PF05971 RNA methyltransferase MID13_06965 PF04204 Homoserine O-succinyltransferase MID13_06980 PF07687 Peptidase dimerisation domain MID13_06980 PF01546 Peptidase family M20/M25/M40 MID13_06985 PF00990 Diguanylate cyclase, GGDEF domain MID13_07010 PF13356 Arm DNA-binding domain MID13_07010 PF00589 Phage integrase family MID13_07025 PF13148 Protein of unknown function (DUF3987) MID13_07040 PF00589 Phage integrase family MID13_07055 PF04002 RadC-like JAB domain MID13_07065 PF13181 Tetratricopeptide repeat MID13_07065 PF17128 Domain of unknown function (DUF5107) MID13_07070 PF00083 Sugar (and other) transporter MID13_07075 PF00480 ROK family MID13_07160 PF03466 LysR substrate binding domain MID13_07160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_07180 PF04972 BON domain MID13_07180 PF00263 Bacterial type II and III secretion system protein MID13_07180 PF13629 Pilus formation protein N terminal region MID13_07190 PF10609 NUBPL iron-transfer P-loop NTPase MID13_07195 PF00437 Type II/IV secretion system protein MID13_07230 PF04972 BON domain MID13_07230 PF00691 OmpA family MID13_07235 PF00563 EAL domain MID13_07235 PF13185 GAF domain MID13_07235 PF00990 Diguanylate cyclase, GGDEF domain MID13_07245 PF00709 Adenylosuccinate synthetase MID13_07250 PF03466 LysR substrate binding domain MID13_07250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_07265 PF00672 HAMP domain MID13_07265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_07265 PF12729 Four helix bundle sensory module for signal transduction MID13_07275 PF00704 Glycosyl hydrolases family 18 MID13_07280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_07280 PF03466 LysR substrate binding domain MID13_07285 PF07715 TonB-dependent Receptor Plug Domain MID13_07285 PF00593 TonB dependent receptor MID13_07290 PF13649 Methyltransferase domain MID13_07295 PF00990 Diguanylate cyclase, GGDEF domain MID13_07300 PF00583 Acetyltransferase (GNAT) family MID13_07305 PF00933 Glycosyl hydrolase family 3 N terminal domain MID13_07305 PF14310 Fibronectin type III-like domain MID13_07305 PF01915 Glycosyl hydrolase family 3 C-terminal domain MID13_07310 PF00149 Calcineurin-like phosphoesterase MID13_07310 PF12320 Type 5 capsule protein repressor C-terminal domain MID13_07315 PF13476 AAA domain MID13_07335 PF04244 Deoxyribodipyrimidine photo-lyase-related protein MID13_07340 PF03441 FAD binding domain of DNA photolyase MID13_07340 PF00875 DNA photolyase MID13_07345 PF00582 Universal stress protein family MID13_07365 PF00005 ABC transporter MID13_07370 PF01497 Periplasmic binding protein MID13_07375 PF01032 FecCD transport family MID13_07380 PF00005 ABC transporter MID13_07385 PF03621 MbtH-like protein MID13_07390 PF00668 Condensation domain MID13_07390 PF00501 AMP-binding enzyme MID13_07390 PF13193 AMP-binding enzyme C-terminal domain MID13_07390 PF00550 Phosphopantetheine attachment site MID13_07395 PF00501 AMP-binding enzyme MID13_07395 PF13193 AMP-binding enzyme C-terminal domain MID13_07395 PF00668 Condensation domain MID13_07395 PF00550 Phosphopantetheine attachment site MID13_07400 PF00593 TonB dependent receptor MID13_07400 PF07715 TonB-dependent Receptor Plug Domain MID13_07410 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) MID13_07420 PF07690 Major Facilitator Superfamily MID13_07425 PF03009 Glycerophosphoryl diester phosphodiesterase family MID13_07435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MID13_07435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID13_07455 PF00293 NUDIX domain MID13_07470 PF00849 RNA pseudouridylate synthase MID13_07470 PF01479 S4 domain MID13_07480 PF00132 Bacterial transferase hexapeptide (six repeats) MID13_07480 PF12464 Maltose acetyltransferase MID13_07500 PF01548 Transposase MID13_07500 PF02371 Transposase IS116/IS110/IS902 family MID13_07550 PF03737 Aldolase/RraA MID13_07570 PF01588 Putative tRNA binding domain MID13_07570 PF08264 Anticodon-binding domain of tRNA MID13_07570 PF09334 tRNA synthetases class I (M) MID13_07575 PF00293 NUDIX domain MID13_07585 PF04072 Leucine carboxyl methyltransferase MID13_07620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID13_07645 PF02566 OsmC-like protein MID13_07660 PF02016 LD-carboxypeptidase N-terminal domain MID13_07660 PF17676 LD-carboxypeptidase C-terminal domain MID13_07685 PF07517 SecA DEAD-like domain MID13_07685 PF01043 SecA preprotein cross-linking domain MID13_07685 PF07516 SecA Wing and Scaffold domain MID13_07685 PF02810 SEC-C motif MID13_07690 PF13419 Haloacid dehalogenase-like hydrolase MID13_07705 PF00132 Bacterial transferase hexapeptide (six repeats) MID13_07735 PF03616 Sodium/glutamate symporter MID13_07750 PF12392 Collagenase MID13_07750 PF01136 Peptidase family U32 MID13_07760 PF00664 ABC transporter transmembrane region MID13_07760 PF00005 ABC transporter MID13_07765 PF00005 ABC transporter MID13_07770 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID13_07775 PF00528 Binding-protein-dependent transport system inner membrane component MID13_07780 PF00528 Binding-protein-dependent transport system inner membrane component MID13_07785 PF01810 LysE type translocator MID13_07880 PF02321 Outer membrane efflux protein MID13_07885 PF00873 AcrB/AcrD/AcrF family MID13_07895 PF03466 LysR substrate binding domain MID13_07895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_07900 PF02397 Bacterial sugar transferase MID13_07910 PF13579 Glycosyl transferase 4-like domain MID13_07910 PF00534 Glycosyl transferases group 1 MID13_07945 PF13439 Glycosyltransferase Family 4 MID13_07945 PF00534 Glycosyl transferases group 1 MID13_07950 PF00534 Glycosyl transferases group 1 MID13_07955 PF00072 Response regulator receiver domain MID13_07955 PF00158 Sigma-54 interaction domain MID13_07955 PF02954 Bacterial regulatory protein, Fis family MID13_07965 PF00005 ABC transporter MID13_07965 PF00571 CBS domain MID13_07970 PF00528 Binding-protein-dependent transport system inner membrane component MID13_07980 PF00672 HAMP domain MID13_07980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_07980 PF01627 Hpt domain MID13_07980 PF00512 His Kinase A (phospho-acceptor) domain MID13_07980 PF00072 Response regulator receiver domain MID13_07980 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MID13_08000 PF00691 OmpA family MID13_08010 PF01068 ATP dependent DNA ligase domain MID13_08010 PF14743 DNA ligase OB-like domain MID13_08015 PF01554 MatE MID13_08020 PF00677 Lumazine binding domain MID13_08030 PF03881 Fructosamine kinase MID13_08040 PF00877 NlpC/P60 family MID13_08045 PF17202 Single cache domain 3 MID13_08045 PF00672 HAMP domain MID13_08045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_08055 PF03942 DTW domain MID13_08060 PF00480 ROK family MID13_08070 PF03453 MoeA N-terminal region (domain I and II) MID13_08070 PF03454 MoeA C-terminal region (domain IV) MID13_08070 PF00994 Probable molybdopterin binding domain MID13_08075 PF12804 MobA-like NTP transferase domain MID13_08080 PF00005 ABC transporter MID13_08080 PF08402 TOBE domain MID13_08085 PF00528 Binding-protein-dependent transport system inner membrane component MID13_08090 PF12849 PBP superfamily domain MID13_08095 PF00158 Sigma-54 interaction domain MID13_08095 PF02954 Bacterial regulatory protein, Fis family MID13_08095 PF00072 Response regulator receiver domain MID13_08100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_08100 PF00512 His Kinase A (phospho-acceptor) domain MID13_08105 PF08269 Cache domain MID13_08105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_08120 PF00005 ABC transporter MID13_08120 PF12848 ABC transporter MID13_08125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_08125 PF00672 HAMP domain MID13_08130 PF08173 Membrane bound YbgT-like protein MID13_08135 PF02322 Cytochrome bd terminal oxidase subunit II MID13_08140 PF01654 Cytochrome bd terminal oxidase subunit I MID13_08155 PF05114 Protein of unknown function (DUF692) MID13_08170 PF02634 FdhD/NarQ family MID13_08190 PF02613 Nitrate reductase delta subunit MID13_08200 PF01568 Molydopterin dinucleotide binding domain MID13_08200 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MID13_08200 PF00384 Molybdopterin oxidoreductase MID13_08205 PF13247 4Fe-4S dicluster domain MID13_08225 PF02146 Sir2 family MID13_08235 PF13416 Bacterial extracellular solute-binding protein MID13_08240 PF13416 Bacterial extracellular solute-binding protein MID13_08245 PF00528 Binding-protein-dependent transport system inner membrane component MID13_08250 PF00528 Binding-protein-dependent transport system inner membrane component MID13_08255 PF00005 ABC transporter MID13_08255 PF08402 TOBE domain MID13_08275 PF01171 PP-loop family MID13_08280 PF00582 Universal stress protein family MID13_08285 PF00027 Cyclic nucleotide-binding domain MID13_08285 PF13545 Crp-like helix-turn-helix domain MID13_08300 PF00403 Heavy-metal-associated domain MID13_08310 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP MID13_08310 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID13_08325 PF00115 Cytochrome C and Quinol oxidase polypeptide I MID13_08340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_08340 PF00512 His Kinase A (phospho-acceptor) domain MID13_08340 PF09308 LuxQ, periplasmic MID13_08340 PF00072 Response regulator receiver domain MID13_08365 PF06303 MatP N-terminal domain MID13_08365 PF17414 MatP C-terminal ribbon-helix-helix domain MID13_08370 PF13654 AAA domain MID13_08370 PF05362 Lon protease (S16) C-terminal proteolytic domain MID13_08375 PF07977 FabA-like domain MID13_08380 PF04957 Ribosome modulation factor MID13_08390 PF00005 ABC transporter MID13_08390 PF16326 ABC transporter C-terminal domain MID13_08390 PF12848 ABC transporter MID13_08400 PF01170 Putative RNA methylase family UPF0020 MID13_08400 PF02926 THUMP domain MID13_08400 PF10672 S-adenosylmethionine-dependent methyltransferase MID13_08405 PF07126 Cell-division protein ZapC MID13_08410 PF01180 Dihydroorotate dehydrogenase MID13_08415 PF05088 Bacterial NAD-glutamate dehydrogenase MID13_08425 PF17432 Domain of unknown function (DUF3458_C) ARM repeats MID13_08425 PF01433 Peptidase family M1 domain MID13_08425 PF11940 Domain of unknown function (DUF3458) Ig-like fold MID13_08435 PF11818 C-terminal domain of tail specific protease (DUF3340) MID13_08435 PF00595 PDZ domain MID13_08435 PF17804 Tail specific protease N-terminal domain MID13_08435 PF03572 Peptidase family S41 MID13_08440 PF04352 ProQ/FINO family MID13_08440 PF17516 ProQ C-terminal domain MID13_08445 PF13185 GAF domain MID13_08450 PF00664 ABC transporter transmembrane region MID13_08450 PF00005 ABC transporter MID13_08455 PF04403 Paraquat-inducible protein A MID13_08460 PF02470 MlaD protein MID13_08465 PF01189 16S rRNA methyltransferase RsmB/F MID13_08465 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF MID13_08465 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF MID13_08470 PF17783 CvfB-like winged helix domain MID13_08470 PF13509 S1 domain MID13_08485 PF00391 PEP-utilising enzyme, mobile domain MID13_08485 PF02896 PEP-utilising enzyme, TIM barrel domain MID13_08485 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MID13_08490 PF00793 DAHP synthetase I family MID13_08495 PF04461 Protein of unknown function (DUF520) MID13_08500 PF10414 Sirohaem synthase dimerisation region MID13_08500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MID13_08500 PF14824 Sirohaem biosynthesis protein central MID13_08505 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID13_08510 PF00528 Binding-protein-dependent transport system inner membrane component MID13_08515 PF00528 Binding-protein-dependent transport system inner membrane component MID13_08520 PF00005 ABC transporter MID13_08525 PF01027 Inhibitor of apoptosis-promoting Bax1 MID13_08530 PF04358 DsrC like protein MID13_08535 PF00708 Acylphosphatase MID13_08540 PF12729 Four helix bundle sensory module for signal transduction MID13_08540 PF00672 HAMP domain MID13_08540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_08545 PF17785 PUA-like domain MID13_08545 PF10672 S-adenosylmethionine-dependent methyltransferase MID13_08580 PF13488 Glycine zipper MID13_08580 PF00691 OmpA family MID13_08590 PF17151 Periplasmic sensor domain MID13_08590 PF00990 Diguanylate cyclase, GGDEF domain MID13_08595 PF06508 Queuosine biosynthesis protein QueC MID13_08600 PF04055 Radical SAM superfamily MID13_08630 PF16177 Acetyl-coenzyme A synthetase N-terminus MID13_08630 PF00501 AMP-binding enzyme MID13_08630 PF13193 AMP-binding enzyme C-terminal domain MID13_08635 PF04303 PrpF protein MID13_08640 PF00694 Aconitase C-terminal domain MID13_08640 PF00330 Aconitase family (aconitate hydratase) MID13_08645 PF00285 Citrate synthase, C-terminal domain MID13_08665 PF06715 Gp5 C-terminal repeat (3 copies) MID13_08665 PF04717 Type VI secretion system, phage-baseplate injector MID13_08695 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath MID13_08720 PF00004 ATPase family associated with various cellular activities (AAA) MID13_08720 PF07724 AAA domain (Cdc48 subfamily) MID13_08720 PF17871 AAA lid domain MID13_08720 PF10431 C-terminal, D2-small domain, of ClpB protein MID13_08750 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE MID13_08765 PF03793 PASTA domain MID13_08765 PF00069 Protein kinase domain MID13_08775 PF00072 Response regulator receiver domain MID13_08780 PF00672 HAMP domain MID13_08780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_08780 PF00512 His Kinase A (phospho-acceptor) domain MID13_08780 PF01627 Hpt domain MID13_08780 PF00072 Response regulator receiver domain MID13_08780 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MID13_08795 PF01970 Tripartite tricarboxylate transporter TctA family MID13_08810 PF09905 DNA-binding protein VF530 MID13_08815 PF00873 AcrB/AcrD/AcrF family MID13_08825 PF00072 Response regulator receiver domain MID13_08830 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain MID13_08830 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID13_08835 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MID13_08840 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain MID13_08840 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain MID13_08845 PF00072 Response regulator receiver domain MID13_08845 PF12431 Transcriptional regulator MID13_08850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_08850 PF00989 PAS fold MID13_08850 PF17203 Single cache domain 3 MID13_08850 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain MID13_08865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID13_08880 PF01235 Sodium:alanine symporter family MID13_08890 PF01235 Sodium:alanine symporter family MID13_08905 PF01117 Aerolysin toxin MID13_08905 PF03440 Aerolysin/Pertussis toxin (APT) domain MID13_08910 PF01810 LysE type translocator MID13_08930 PF01925 Sulfite exporter TauE/SafE MID13_08940 PF01717 Cobalamin-independent synthase, Catalytic domain MID13_08940 PF08267 Cobalamin-independent synthase, N-terminal domain MID13_08960 PF01928 CYTH domain MID13_08975 PF00583 Acetyltransferase (GNAT) family MID13_09000 PF02954 Bacterial regulatory protein, Fis family MID13_09000 PF00072 Response regulator receiver domain MID13_09000 PF00158 Sigma-54 interaction domain MID13_09005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_09005 PF00512 His Kinase A (phospho-acceptor) domain MID13_09005 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID13_09010 PF00939 Sodium:sulfate symporter transmembrane region MID13_09015 PF00857 Isochorismatase family MID13_09035 PF04151 Bacterial pre-peptidase C-terminal domain MID13_09035 PF02868 Thermolysin metallopeptidase, alpha-helical domain MID13_09035 PF03413 Peptidase propeptide and YPEB domain MID13_09035 PF07504 Fungalysin/Thermolysin Propeptide Motif MID13_09035 PF01447 Thermolysin metallopeptidase, catalytic domain MID13_09040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_09040 PF03466 LysR substrate binding domain MID13_09050 PF01551 Peptidase family M23 MID13_09050 PF10145 Phage-related minor tail protein MID13_09050 PF01464 Transglycosylase SLT domain MID13_09075 PF03466 LysR substrate binding domain MID13_09075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_09080 PF01212 Beta-eliminating lyase MID13_09095 PF01625 Peptide methionine sulfoxide reductase MID13_09095 PF01641 SelR domain MID13_09105 PF16591 Helical bimodular sensor domain MID13_09105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_09105 PF00672 HAMP domain MID13_09110 PF00392 Bacterial regulatory proteins, gntR family MID13_09110 PF07729 FCD domain MID13_09115 PF01081 KDPG and KHG aldolase MID13_09120 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID13_09130 PF00491 Arginase family MID13_09135 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MID13_09135 PF17810 Arginine decarboxylase helical bundle domain MID13_09135 PF17944 Arginine decarboxylase C-terminal helical extension MID13_09140 PF08241 Methyltransferase domain MID13_09145 PF00171 Aldehyde dehydrogenase family MID13_09150 PF17932 Tetracyclin repressor-like, C-terminal domain MID13_09150 PF00440 Bacterial regulatory proteins, tetR family MID13_09155 PF00005 ABC transporter MID13_09155 PF16326 ABC transporter C-terminal domain MID13_09155 PF12848 ABC transporter MID13_09170 PF04266 ASCH domain MID13_09175 PF00453 Ribosomal protein L20 MID13_09180 PF01632 Ribosomal protein L35 MID13_09185 PF00707 Translation initiation factor IF-3, C-terminal domain MID13_09185 PF05198 Translation initiation factor IF-3, N-terminal domain MID13_09190 PF02824 TGS domain MID13_09190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MID13_09190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MID13_09190 PF03129 Anticodon binding domain MID13_09215 PF07070 SpoOM protein MID13_09220 PF00392 Bacterial regulatory proteins, gntR family MID13_09220 PF07702 UTRA domain MID13_09225 PF01979 Amidohydrolase family MID13_09230 PF00491 Arginase family MID13_09235 PF01175 Urocanase Rossmann-like domain MID13_09235 PF17392 Urocanase C-terminal domain MID13_09235 PF17391 Urocanase N-terminal domain MID13_09240 PF00221 Aromatic amino acid lyase MID13_09250 PF04191 Phospholipid methyltransferase MID13_09255 PF02913 FAD linked oxidases, C-terminal domain MID13_09255 PF01565 FAD binding domain MID13_09255 PF13183 4Fe-4S dicluster domain MID13_09270 PF00691 OmpA family MID13_09290 PF01259 SAICAR synthetase MID13_09300 PF08482 ATP-dependent helicase C-terminal MID13_09300 PF00271 Helicase conserved C-terminal domain MID13_09300 PF04408 Helicase associated domain (HA2) MID13_09300 PF00270 DEAD/DEAH box helicase MID13_09305 PF03949 Malic enzyme, NAD binding domain MID13_09305 PF00390 Malic enzyme, N-terminal domain MID13_09310 PF02698 DUF218 domain MID13_09315 PF00939 Sodium:sulfate symporter transmembrane region MID13_09320 PF06942 GlpM protein MID13_09325 PF00990 Diguanylate cyclase, GGDEF domain MID13_09325 PF00072 Response regulator receiver domain MID13_09335 PF08448 PAS fold MID13_09335 PF00990 Diguanylate cyclase, GGDEF domain MID13_09340 PF03466 LysR substrate binding domain MID13_09340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_09350 PF00266 Aminotransferase class-V MID13_09390 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_09395 PF00664 ABC transporter transmembrane region MID13_09395 PF00005 ABC transporter MID13_09400 PF00664 ABC transporter transmembrane region MID13_09400 PF00005 ABC transporter MID13_09405 PF00268 Ribonucleotide reductase, small chain MID13_09410 PF00317 Ribonucleotide reductase, all-alpha domain MID13_09410 PF08343 Ribonucleotide reductase N-terminal MID13_09410 PF02867 Ribonucleotide reductase, barrel domain MID13_09415 PF07972 NrdI Flavodoxin like MID13_09425 PF01521 Iron-sulphur cluster biosynthesis MID13_09430 PF01458 Uncharacterized protein family (UPF0051) MID13_09435 PF00005 ABC transporter MID13_09440 PF01458 Uncharacterized protein family (UPF0051) MID13_09445 PF00266 Aminotransferase class-V MID13_09450 PF02657 Fe-S metabolism associated domain MID13_09455 PF00127 Copper binding proteins, plastocyanin/azurin family MID13_09460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_09460 PF02743 Cache domain MID13_09460 PF00672 HAMP domain MID13_09465 PF02028 BCCT, betaine/carnitine/choline family transporter MID13_09470 PF02028 BCCT, betaine/carnitine/choline family transporter MID13_09475 PF00072 Response regulator receiver domain MID13_09475 PF00196 Bacterial regulatory proteins, luxR family MID13_09480 PF17200 Single Cache domain 2 MID13_09480 PF07730 Histidine kinase MID13_09485 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID13_09495 PF03480 Bacterial extracellular solute-binding protein, family 7 MID13_09510 PF00753 Metallo-beta-lactamase superfamily MID13_09515 PF05951 Bacterial protein of unknown function (DUF882) MID13_09520 PF01471 Putative peptidoglycan binding domain MID13_09520 PF03734 L,D-transpeptidase catalytic domain MID13_09545 PF00925 GTP cyclohydrolase II MID13_09555 PF03918 Cytochrome C biogenesis protein MID13_09560 PF08534 Redoxin MID13_09565 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal MID13_09565 PF01578 Cytochrome C assembly protein MID13_09570 PF03916 Polysulphide reductase, NrfD MID13_09575 PF13247 4Fe-4S dicluster domain MID13_09585 PF02335 Cytochrome c552 MID13_09590 PF00581 Rhodanese-like domain MID13_09600 PF03989 DNA gyrase C-terminal domain, beta-propeller MID13_09600 PF00521 DNA gyrase/topoisomerase IV, subunit A MID13_09610 PF00317 Ribonucleotide reductase, all-alpha domain MID13_09610 PF03477 ATP cone domain MID13_09610 PF02867 Ribonucleotide reductase, barrel domain MID13_09615 PF00268 Ribonucleotide reductase, small chain MID13_09620 PF00970 Oxidoreductase FAD-binding domain MID13_09620 PF00111 2Fe-2S iron-sulfur cluster binding domain MID13_09620 PF00175 Oxidoreductase NAD-binding domain MID13_09630 PF02613 Nitrate reductase delta subunit MID13_09635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MID13_09635 PF00384 Molybdopterin oxidoreductase MID13_09635 PF01568 Molydopterin dinucleotide binding domain MID13_09640 PF13247 4Fe-4S dicluster domain MID13_09640 PF12800 4Fe-4S binding domain MID13_09645 PF04976 DMSO reductase anchor subunit (DmsC) MID13_09650 PF00994 Probable molybdopterin binding domain MID13_09675 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MID13_09680 PF16653 Saccharopine dehydrogenase C-terminal domain MID13_09680 PF03435 Saccharopine dehydrogenase NADP binding domain MID13_09685 PF00202 Aminotransferase class-III MID13_09710 PF01066 CDP-alcohol phosphatidyltransferase MID13_09715 PF08459 UvrC Helix-hairpin-helix N-terminal MID13_09715 PF02151 UvrB/uvrC motif MID13_09715 PF01541 GIY-YIG catalytic domain MID13_09720 PF00072 Response regulator receiver domain MID13_09720 PF00196 Bacterial regulatory proteins, luxR family MID13_09725 PF03104 DNA polymerase family B, exonuclease domain MID13_09725 PF00136 DNA polymerase family B MID13_09735 PF01132 Elongation factor P (EF-P) OB domain MID13_09735 PF08207 Elongation factor P (EF-P) KOW-like domain MID13_09735 PF09285 Elongation factor P, C-terminal MID13_09740 PF04269 Protein of unknown function, DUF440 MID13_09750 PF00849 RNA pseudouridylate synthase MID13_09750 PF01479 S4 domain MID13_09755 PF01300 Telomere recombination MID13_09760 PF02811 PHP domain MID13_09765 PF08056 Tryptophan operon leader peptide MID13_09770 PF00425 chorismate binding enzyme MID13_09770 PF04715 Anthranilate synthase component I, N terminal region MID13_09775 PF00117 Glutamine amidotransferase class-I MID13_09780 PF00591 Glycosyl transferase family, a/b domain MID13_09780 PF02885 Glycosyl transferase family, helical bundle domain MID13_09785 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MID13_09785 PF00218 Indole-3-glycerol phosphate synthase MID13_09790 PF00291 Pyridoxal-phosphate dependent enzyme MID13_09795 PF00290 Tryptophan synthase alpha chain MID13_09800 PF01145 SPFH domain / Band 7 family MID13_09800 PF16200 C-terminal region of band_7 MID13_09810 PF00375 Sodium:dicarboxylate symporter family MID13_09830 PF00672 HAMP domain MID13_09830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_09835 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID13_09840 PF00155 Aminotransferase class I and II MID13_09845 PF03466 LysR substrate binding domain MID13_09845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_09855 PF04279 Intracellular septation protein A MID13_09860 PF03061 Thioesterase superfamily MID13_09865 PF03795 YCII-related domain MID13_09875 PF01717 Cobalamin-independent synthase, Catalytic domain MID13_09875 PF08267 Cobalamin-independent synthase, N-terminal domain MID13_09880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_09880 PF03466 LysR substrate binding domain MID13_09895 PF11842 Domain of unknown function (DUF3362) MID13_09895 PF04055 Radical SAM superfamily MID13_09895 PF08497 Radical SAM N-terminal MID13_09905 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase MID13_09910 PF00535 Glycosyl transferase family 2 MID13_09915 PF00072 Response regulator receiver domain MID13_09915 PF00486 Transcriptional regulatory protein, C terminal MID13_09935 PF01266 FAD dependent oxidoreductase MID13_09940 PF03466 LysR substrate binding domain MID13_09940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_09950 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID13_09960 PF03480 Bacterial extracellular solute-binding protein, family 7 MID13_09970 PF08220 DeoR-like helix-turn-helix domain MID13_09970 PF00455 DeoR C terminal sensor domain MID13_09975 PF03616 Sodium/glutamate symporter MID13_09985 PF06610 L-alanine exporter MID13_09990 PF00512 His Kinase A (phospho-acceptor) domain MID13_09990 PF00072 Response regulator receiver domain MID13_09990 PF09308 LuxQ, periplasmic MID13_09990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_10005 PF02445 Quinolinate synthetase A protein MID13_10010 PF13174 Tetratricopeptide repeat MID13_10010 PF16331 TolA binding protein trimerisation MID13_10015 PF00691 OmpA family MID13_10020 PF07676 WD40-like Beta Propeller Repeat MID13_10020 PF04052 TolB amino-terminal domain MID13_10030 PF02472 Biopolymer transport protein ExbD/TolR MID13_10035 PF01618 MotA/TolQ/ExbB proton channel family MID13_10040 PF03061 Thioesterase superfamily MID13_10050 PF08173 Membrane bound YbgT-like protein MID13_10055 PF02322 Cytochrome bd terminal oxidase subunit II MID13_10060 PF01654 Cytochrome bd terminal oxidase subunit I MID13_10065 PF05496 Holliday junction DNA helicase RuvB P-loop domain MID13_10065 PF17864 RuvB AAA lid domain MID13_10065 PF05491 RuvB C-terminal winged helix domain MID13_10070 PF07499 RuvA, C-terminal domain MID13_10070 PF01330 RuvA N terminal domain MID13_10075 PF00672 HAMP domain MID13_10075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_10075 PF02203 Tar ligand binding domain homologue MID13_10080 PF02075 Crossover junction endodeoxyribonuclease RuvC MID13_10085 PF00152 tRNA synthetases class II (D, K and N) MID13_10085 PF02938 GAD domain MID13_10085 PF01336 OB-fold nucleic acid binding domain MID13_10090 PF01904 Protein of unknown function DUF72 MID13_10095 PF13649 Methyltransferase domain MID13_10100 PF08003 Protein of unknown function (DUF1698) MID13_10105 PF18030 RimK PreATP-grasp domain MID13_10105 PF08443 RimK-like ATP-grasp domain MID13_10120 PF00384 Molybdopterin oxidoreductase MID13_10120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MID13_10120 PF12838 4Fe-4S dicluster domain MID13_10120 PF01568 Molydopterin dinucleotide binding domain MID13_10120 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MID13_10125 PF04310 MukB N-terminal MID13_10125 PF16330 MukB hinge domain MID13_10130 PF04288 MukE-like family MID13_10135 PF17192 MukF middle domain MID13_10135 PF17193 MukF C-terminal domain MID13_10135 PF03882 MukF winged-helix domain MID13_10140 PF13847 Methyltransferase domain MID13_10145 PF02698 DUF218 domain MID13_10150 PF00072 Response regulator receiver domain MID13_10150 PF00486 Transcriptional regulatory protein, C terminal MID13_10155 PF02613 Nitrate reductase delta subunit MID13_10160 PF00356 Bacterial regulatory proteins, lacI family MID13_10165 PF04994 TfoX C-terminal domain MID13_10165 PF04993 TfoX N-terminal domain MID13_10185 PF00534 Glycosyl transferases group 1 MID13_10185 PF08323 Starch synthase catalytic domain MID13_10190 PF00483 Nucleotidyl transferase MID13_10195 PF01396 Topoisomerase DNA binding C4 zinc finger MID13_10195 PF01751 Toprim domain MID13_10195 PF01131 DNA topoisomerase MID13_10195 PF08272 Topoisomerase I zinc-ribbon-like MID13_10200 PF10692 Protein of unknown function (DUF2498) MID13_10205 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MID13_10215 PF03588 Leucyl/phenylalanyl-tRNA protein transferase MID13_10220 PF04377 Arginine-tRNA-protein transferase, C terminus MID13_10220 PF04376 Arginine-tRNA-protein transferase, N terminus MID13_10225 PF01176 Translation initiation factor 1A / IF-1 MID13_10230 PF00004 ATPase family associated with various cellular activities (AAA) MID13_10230 PF07724 AAA domain (Cdc48 subfamily) MID13_10230 PF10431 C-terminal, D2-small domain, of ClpB protein MID13_10230 PF17871 AAA lid domain MID13_10230 PF02861 Clp amino terminal domain, pathogenicity island component MID13_10235 PF02617 ATP-dependent Clp protease adaptor protein ClpS MID13_10240 PF00313 'Cold-shock' DNA-binding domain MID13_10245 PF03971 Monomeric isocitrate dehydrogenase MID13_10250 PF00849 RNA pseudouridylate synthase MID13_10260 PF13307 Helicase C-terminal domain MID13_10260 PF06733 DEAD_2 MID13_10265 PF01925 Sulfite exporter TauE/SafE MID13_10275 PF10689 Protein of unknown function (DUF2496) MID13_10280 PF08007 Cupin superfamily protein MID13_10285 PF02743 Cache domain MID13_10285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_10285 PF00672 HAMP domain MID13_10290 PF07690 Major Facilitator Superfamily MID13_10295 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain MID13_10295 PF00326 Prolyl oligopeptidase family MID13_10300 PF03372 Endonuclease/Exonuclease/phosphatase family MID13_10310 PF00528 Binding-protein-dependent transport system inner membrane component MID13_10315 PF00528 Binding-protein-dependent transport system inner membrane component MID13_10320 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID13_10325 PF00005 ABC transporter MID13_10340 PF01228 Glycine radical MID13_10340 PF02901 Pyruvate formate lyase-like MID13_10350 PF04055 Radical SAM superfamily MID13_10355 PF03887 YfbU domain MID13_10360 PF06629 MltA-interacting protein MipA MID13_10365 PF06798 PrkA serine protein kinase C-terminal domain MID13_10365 PF08298 PrkA AAA domain MID13_10370 PF04285 Protein of unknown function (DUF444) MID13_10375 PF04293 SpoVR like protein MID13_10380 PF08496 Peptidase family S49 N-terminal MID13_10380 PF01343 Peptidase family S49 MID13_10385 PF00106 short chain dehydrogenase MID13_10390 PF00154 recA bacterial DNA recombination protein MID13_10400 PF07733 Bacterial DNA polymerase III alpha NTPase domain MID13_10400 PF14579 Helix-hairpin-helix motif MID13_10400 PF02811 PHP domain MID13_10400 PF01336 OB-fold nucleic acid binding domain MID13_10400 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MID13_10405 PF01584 CheW-like domain MID13_10405 PF00072 Response regulator receiver domain MID13_10410 PF00480 ROK family MID13_10415 PF02887 Pyruvate kinase, alpha/beta domain MID13_10415 PF00224 Pyruvate kinase, barrel domain MID13_10420 PF01734 Patatin-like phospholipase MID13_10440 PF02378 Phosphotransferase system, EIIC MID13_10440 PF00367 phosphotransferase system, EIIB MID13_10445 PF01026 TatD related DNase MID13_10450 PF09115 DNA polymerase III, delta subunit, C terminal MID13_10455 PF02223 Thymidylate kinase MID13_10460 PF02618 YceG-like family MID13_10465 PF01063 Amino-transferase class IV MID13_10470 PF00109 Beta-ketoacyl synthase, N-terminal domain MID13_10470 PF02801 Beta-ketoacyl synthase, C-terminal domain MID13_10475 PF00550 Phosphopantetheine attachment site MID13_10485 PF00698 Acyl transferase domain MID13_10490 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MID13_10490 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MID13_10495 PF02504 Fatty acid synthesis protein MID13_10500 PF01783 Ribosomal L32p protein family MID13_10505 PF02620 Large ribosomal RNA subunit accumulation protein YceD MID13_10510 PF02545 Maf-like protein MID13_10515 PF00849 RNA pseudouridylate synthase MID13_10515 PF01479 S4 domain MID13_10520 PF12111 Polyribonucleotide phosphorylase C terminal MID13_10520 PF00575 S1 RNA binding domain MID13_10520 PF10150 Ribonuclease E/G family MID13_10525 PF00916 Sulfate permease family MID13_10525 PF01740 STAS domain MID13_10530 PF01451 Low molecular weight phosphotyrosine protein phosphatase MID13_10535 PF12557 Cob(I)alamin adenosyltransferase N terminal MID13_10535 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP MID13_10540 PF05170 AsmA family MID13_10545 PF00485 Phosphoribulokinase / Uridine kinase family MID13_10550 PF10609 NUBPL iron-transfer P-loop NTPase MID13_10555 PF09334 tRNA synthetases class I (M) MID13_10555 PF01588 Putative tRNA binding domain MID13_10565 PF07840 FadR C-terminal domain MID13_10565 PF00392 Bacterial regulatory proteins, gntR family MID13_10570 PF06450 Bacterial Na+/H+ antiporter B (NhaB) MID13_10575 PF02600 Disulfide bond formation protein DsbB MID13_10580 PF07517 SecA DEAD-like domain MID13_10580 PF01043 SecA preprotein cross-linking domain MID13_10580 PF07516 SecA Wing and Scaffold domain MID13_10580 PF02810 SEC-C motif MID13_10585 PF07963 Prokaryotic N-terminal methylation motif MID13_10585 PF08334 Type II secretion system (T2SS), protein G MID13_10590 PF01207 Dihydrouridine synthase (Dus) MID13_10595 PF00990 Diguanylate cyclase, GGDEF domain MID13_10595 PF05230 MASE2 domain MID13_10600 PF00128 Alpha amylase, catalytic domain MID13_10600 PF02903 Alpha amylase, N-terminal ig-like domain MID13_10610 PF04217 Protein of unknown function, DUF412 MID13_10615 PF00871 Acetokinase family MID13_10620 PF01515 Phosphate acetyl/butaryl transferase MID13_10620 PF07085 DRTGG domain MID13_10625 PF13409 Glutathione S-transferase, N-terminal domain MID13_10630 PF00005 ABC transporter MID13_10630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_10635 PF00005 ABC transporter MID13_10635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_10640 PF00528 Binding-protein-dependent transport system inner membrane component MID13_10640 PF12911 N-terminal TM domain of oligopeptide transport permease C MID13_10645 PF00528 Binding-protein-dependent transport system inner membrane component MID13_10650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID13_10655 PF02391 MoaE protein MID13_10660 PF02597 ThiS family MID13_10665 PF01967 MoaC family MID13_10670 PF00994 Probable molybdopterin binding domain MID13_10675 PF06463 Molybdenum Cofactor Synthesis C MID13_10675 PF04055 Radical SAM superfamily MID13_10680 PF01933 Uncharacterised protein family UPF0052 MID13_10685 PF01627 Hpt domain MID13_10690 PF00158 Sigma-54 interaction domain MID13_10690 PF02954 Bacterial regulatory protein, Fis family MID13_10690 PF00072 Response regulator receiver domain MID13_10695 PF02151 UvrB/uvrC motif MID13_10695 PF12344 Ultra-violet resistance protein B MID13_10695 PF17757 UvrB interaction domain MID13_10695 PF04851 Type III restriction enzyme, res subunit MID13_10695 PF00271 Helicase conserved C-terminal domain MID13_10705 PF02508 Rnf-Nqr subunit, membrane protein MID13_10710 PF04060 Putative Fe-S cluster MID13_10715 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MID13_10715 PF12838 4Fe-4S dicluster domain MID13_10715 PF13375 RnfC Barrel sandwich hybrid domain MID13_10715 PF10531 SLBB domain MID13_10720 PF03116 NQR2, RnfD, RnfE family MID13_10725 PF04205 FMN-binding domain MID13_10730 PF02508 Rnf-Nqr subunit, membrane protein MID13_10735 PF00633 Helix-hairpin-helix motif MID13_10735 PF10576 Iron-sulfur binding domain of endonuclease III MID13_10735 PF00730 HhH-GPD superfamily base excision DNA repair protein MID13_10740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID13_10745 PF10952 Protein of unknown function (DUF2753) MID13_10750 PF18393 MotY N-terminal domain MID13_10750 PF00691 OmpA family MID13_10755 PF00929 Exonuclease MID13_10760 PF13726 Na+-H+ antiporter family MID13_10760 PF03553 Na+/H+ antiporter family MID13_10770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_10770 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MID13_10770 PF00072 Response regulator receiver domain MID13_10770 PF01627 Hpt domain MID13_10770 PF00512 His Kinase A (phospho-acceptor) domain MID13_10770 PF00672 HAMP domain MID13_10780 PF00462 Glutaredoxin MID13_10785 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MID13_10785 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MID13_10800 PF00171 Aldehyde dehydrogenase family MID13_10800 PF00465 Iron-containing alcohol dehydrogenase MID13_10805 PF01914 MarC family integral membrane protein MID13_10810 PF00027 Cyclic nucleotide-binding domain MID13_10810 PF00520 Ion transport protein MID13_10820 PF01118 Semialdehyde dehydrogenase, NAD binding domain MID13_10820 PF02774 Semialdehyde dehydrogenase, dimerisation domain MID13_10825 PF03553 Na+/H+ antiporter family MID13_10840 PF04245 37-kD nucleoid-associated bacterial protein MID13_10845 PF07208 Protein of unknown function (DUF1414) MID13_10850 PF11893 Domain of unknown function (DUF3413) MID13_10850 PF00884 Sulfatase MID13_10865 PF02082 Transcriptional regulator MID13_10875 PF00850 Histone deacetylase domain MID13_10880 PF00106 short chain dehydrogenase MID13_10890 PF01131 DNA topoisomerase MID13_10890 PF01751 Toprim domain MID13_10895 PF00881 Nitroreductase family MID13_10900 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_10900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MID13_10905 PF01343 Peptidase family S49 MID13_10910 PF17763 Glutaminase/Asparaginase C-terminal domain MID13_10910 PF00710 Asparaginase, N-terminal MID13_10915 PF07023 Protein of unknown function (DUF1315) MID13_10925 PF01641 SelR domain MID13_10935 PF01263 Aldose 1-epimerase MID13_10940 PF01156 Inosine-uridine preferring nucleoside hydrolase MID13_10945 PF13847 Methyltransferase domain MID13_10960 PF02028 BCCT, betaine/carnitine/choline family transporter MID13_10965 PF00245 Alkaline phosphatase MID13_10970 PF03692 Putative zinc- or iron-chelating domain MID13_10975 PF03692 Putative zinc- or iron-chelating domain MID13_10980 PF00230 Major intrinsic protein MID13_10985 PF13662 Toprim domain MID13_10985 PF02132 RecR protein MID13_10990 PF02575 YbaB/EbfC DNA-binding family MID13_10995 PF12169 DNA polymerase III subunits gamma and tau domain III MID13_10995 PF12170 DNA polymerase III tau subunit V interacting with alpha MID13_11000 PF00156 Phosphoribosyl transferase domain MID13_11005 PF04304 Protein of unknown function (DUF454) MID13_11015 PF00072 Response regulator receiver domain MID13_11020 PF03466 LysR substrate binding domain MID13_11020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_11025 PF00156 Phosphoribosyl transferase domain MID13_11030 PF02674 Colicin V production protein MID13_11035 PF05036 Sporulation related domain MID13_11040 PF08245 Mur ligase middle domain MID13_11040 PF02875 Mur ligase family, glutamate ligase domain MID13_11045 PF01039 Carboxyl transferase domain MID13_11045 PF17848 Acetyl-coA carboxylase zinc finger domain MID13_11050 PF01416 tRNA pseudouridine synthase MID13_11060 PF02774 Semialdehyde dehydrogenase, dimerisation domain MID13_11060 PF01118 Semialdehyde dehydrogenase, NAD binding domain MID13_11065 PF11890 Domain of unknown function (DUF3410) MID13_11065 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID13_11065 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MID13_11070 PF02801 Beta-ketoacyl synthase, C-terminal domain MID13_11070 PF00109 Beta-ketoacyl synthase, N-terminal domain MID13_11075 PF01266 FAD dependent oxidoreductase MID13_11075 PF05430 S-adenosyl-L-methionine-dependent methyltransferase MID13_11085 PF08891 YfcL protein MID13_11090 PF04315 Elongation factor P hydroxylase MID13_11095 PF03458 UPF0126 domain MID13_11100 PF01264 Chorismate synthase MID13_11110 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MID13_11110 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MID13_11120 PF07670 Nucleoside recognition MID13_11120 PF07662 Na+ dependent nucleoside transporter C-terminus MID13_11120 PF01773 Na+ dependent nucleoside transporter N-terminus MID13_11125 PF03466 LysR substrate binding domain MID13_11125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_11130 PF13406 Transglycosylase SLT domain MID13_11135 PF05166 YcgL domain MID13_11140 PF03775 Septum formation inhibitor MinC, C-terminal domain MID13_11140 PF05209 Septum formation inhibitor MinC, N-terminal domain MID13_11145 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MID13_11150 PF03776 Septum formation topological specificity factor MinE MID13_11155 PF00570 HRDC domain MID13_11155 PF01612 3'-5' exonuclease MID13_11160 PF13193 AMP-binding enzyme C-terminal domain MID13_11160 PF00501 AMP-binding enzyme MID13_11165 PF00561 alpha/beta hydrolase fold MID13_11180 PF00814 Glycoprotease family MID13_11185 PF13307 Helicase C-terminal domain MID13_11185 PF04851 Type III restriction enzyme, res subunit MID13_11195 PF01842 ACT domain MID13_11195 PF00551 Formyl transferase MID13_11200 PF06185 YecM protein MID13_11205 PF05746 DALR anticodon binding domain MID13_11205 PF00750 tRNA synthetases class I (R) MID13_11205 PF03485 Arginyl tRNA synthetase N terminal domain MID13_11225 PF07670 Nucleoside recognition MID13_11225 PF02421 Ferrous iron transport protein B MID13_11225 PF07664 Ferrous iron transport protein B C terminus MID13_11230 PF04023 FeoA domain MID13_11235 PF12833 Helix-turn-helix domain MID13_11240 PF01297 Zinc-uptake complex component A periplasmic MID13_11245 PF00005 ABC transporter MID13_11250 PF00950 ABC 3 transport family MID13_11255 PF02629 CoA binding domain MID13_11255 PF00549 CoA-ligase MID13_11260 PF00549 CoA-ligase MID13_11260 PF08442 ATP-grasp domain MID13_11265 PF02817 e3 binding domain MID13_11265 PF00364 Biotin-requiring enzyme MID13_11265 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MID13_11270 PF02779 Transketolase, pyrimidine binding domain MID13_11270 PF16870 2-oxoglutarate dehydrogenase C-terminal MID13_11270 PF00676 Dehydrogenase E1 component MID13_11270 PF16078 2-oxoglutarate dehydrogenase N-terminus MID13_11275 PF13085 2Fe-2S iron-sulfur cluster binding domain MID13_11280 PF00890 FAD binding domain MID13_11280 PF02910 Fumarate reductase flavoprotein C-term MID13_11285 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MID13_11290 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MID13_11295 PF00285 Citrate synthase, C-terminal domain MID13_11300 PF01784 NIF3 (NGG1p interacting factor 3) MID13_11310 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MID13_11310 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MID13_11310 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MID13_11310 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MID13_11315 PF03925 SeqA protein C-terminal domain MID13_11315 PF17206 SeqA protein N-terminal domain MID13_11320 PF12697 Alpha/beta hydrolase family MID13_11330 PF00258 Flavodoxin MID13_11340 PF01475 Ferric uptake regulator family MID13_11350 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain MID13_11350 PF00749 tRNA synthetases class I (E and Q), catalytic domain MID13_11355 PF00367 phosphotransferase system, EIIB MID13_11355 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MID13_11355 PF02378 Phosphotransferase system, EIIC MID13_11360 PF01979 Amidohydrolase family MID13_11365 PF00480 ROK family MID13_11365 PF01047 MarR family MID13_11370 PF02254 TrkA-N domain MID13_11370 PF00999 Sodium/hydrogen exchanger family MID13_11375 PF00733 Asparagine synthase MID13_11375 PF13537 Glutamine amidotransferase domain MID13_11380 PF02357 Transcription termination factor nusG MID13_11385 PF00854 POT family MID13_11390 PF00762 Ferrochelatase MID13_11395 PF05191 Adenylate kinase, active site lid MID13_11400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_11400 PF00183 Hsp90 protein MID13_11405 PF00486 Transcriptional regulatory protein, C terminal MID13_11410 PF17323 Trans-membrane regulatory protein ToxS MID13_11425 PF12850 Calcineurin-like phosphoesterase superfamily domain MID13_11440 PF07556 Protein of unknown function (DUF1538) MID13_11445 PF07556 Protein of unknown function (DUF1538) MID13_11450 PF08338 Domain of unknown function (DUF1731) MID13_11450 PF01370 NAD dependent epimerase/dehydratase family MID13_11455 PF00106 short chain dehydrogenase MID13_11460 PF00085 Thioredoxin MID13_11465 PF01145 SPFH domain / Band 7 family MID13_11465 PF16200 C-terminal region of band_7 MID13_11475 PF13411 MerR HTH family regulatory protein MID13_11490 PF03573 outer membrane porin, OprD family MID13_11500 PF01653 NAD-dependent DNA ligase adenylation domain MID13_11500 PF00533 BRCA1 C Terminus (BRCT) domain MID13_11500 PF03120 NAD-dependent DNA ligase OB-fold domain MID13_11500 PF03119 NAD-dependent DNA ligase C4 zinc finger domain MID13_11500 PF12826 Helix-hairpin-helix motif MID13_11505 PF04354 ZipA, C-terminal FtsZ-binding domain MID13_11515 PF00291 Pyridoxal-phosphate dependent enzyme MID13_11520 PF00381 PTS HPr component phosphorylation site MID13_11525 PF00391 PEP-utilising enzyme, mobile domain MID13_11525 PF05524 PEP-utilising enzyme, N-terminal MID13_11525 PF02896 PEP-utilising enzyme, TIM barrel domain MID13_11530 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MID13_11535 PF07196 Flagellin hook IN motif MID13_11535 PF00669 Bacterial flagellin N-terminal helical region MID13_11535 PF00700 Bacterial flagellin C-terminal helical region MID13_11540 PF07196 Flagellin hook IN motif MID13_11540 PF00700 Bacterial flagellin C-terminal helical region MID13_11540 PF00669 Bacterial flagellin N-terminal helical region MID13_11545 PF04261 Dyp-type peroxidase family MID13_11550 PF11143 Protein of unknown function (DUF2919) MID13_11570 PF03960 ArsC family MID13_11575 PF07687 Peptidase dimerisation domain MID13_11575 PF01546 Peptidase family M20/M25/M40 MID13_11590 PF06804 NlpB/DapX lipoprotein MID13_11595 PF00701 Dihydrodipicolinate synthetase family MID13_11600 PF01842 ACT domain MID13_11605 PF00578 AhpC/TSA family MID13_11610 PF01594 AI-2E family transporter MID13_11620 PF13181 Tetratricopeptide repeat MID13_11620 PF01435 Peptidase family M48 MID13_11625 PF03960 ArsC family MID13_11630 PF03358 NADPH-dependent FMN reductase MID13_11645 PF00860 Permease family MID13_11655 PF02769 AIR synthase related protein, C-terminal domain MID13_11655 PF00586 AIR synthase related protein, N-terminal domain MID13_11660 PF00551 Formyl transferase MID13_11665 PF13230 Glutamine amidotransferases class-II MID13_11670 PF13580 SIS domain MID13_11675 PF09317 Domain of unknown function (DUF1974) MID13_11675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID13_11675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID13_11675 PF02770 Acyl-CoA dehydrogenase, middle domain MID13_11685 PF00929 Exonuclease MID13_11690 PF00075 RNase H MID13_11695 PF08241 Methyltransferase domain MID13_11700 PF00753 Metallo-beta-lactamase superfamily MID13_11700 PF16123 Hydroxyacylglutathione hydrolase C-terminus MID13_11705 PF01464 Transglycosylase SLT domain MID13_11705 PF01476 LysM domain MID13_11715 PF03372 Endonuclease/Exonuclease/phosphatase family MID13_11720 PF00543 Nitrogen regulatory protein P-II MID13_11725 PF00034 Cytochrome c MID13_11730 PF01171 PP-loop family MID13_11730 PF09179 TilS substrate binding domain MID13_11730 PF11734 TilS substrate C-terminal domain MID13_11735 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MID13_11740 PF07733 Bacterial DNA polymerase III alpha NTPase domain MID13_11740 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MID13_11740 PF14579 Helix-hairpin-helix motif MID13_11740 PF01336 OB-fold nucleic acid binding domain MID13_11740 PF02811 PHP domain MID13_11745 PF01351 Ribonuclease HII MID13_11750 PF02684 Lipid-A-disaccharide synthetase MID13_11755 PF00132 Bacterial transferase hexapeptide (six repeats) MID13_11755 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 MID13_11760 PF07977 FabA-like domain MID13_11765 PF00132 Bacterial transferase hexapeptide (six repeats) MID13_11765 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD MID13_11770 PF03938 Outer membrane protein (OmpH-like) MID13_11775 PF01103 Surface antigen MID13_11775 PF07244 Surface antigen variable number repeat MID13_11780 PF17820 PDZ domain MID13_11780 PF02163 Peptidase family M50 MID13_11785 PF13288 DXP reductoisomerase C-terminal domain MID13_11785 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MID13_11785 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MID13_11795 PF01255 Putative undecaprenyl diphosphate synthase MID13_11800 PF01765 Ribosome recycling factor MID13_11805 PF00696 Amino acid kinase family MID13_11810 PF00889 Elongation factor TS MID13_11815 PF00318 Ribosomal protein S2 MID13_11820 PF00557 Metallopeptidase family M24 MID13_11825 PF01909 Nucleotidyltransferase domain MID13_11825 PF01966 HD domain MID13_11825 PF08335 GlnD PII-uridylyltransferase MID13_11825 PF01842 ACT domain MID13_11830 PF11944 Protein of unknown function (DUF3461) MID13_11835 PF00849 RNA pseudouridylate synthase MID13_11840 PF04287 tRNA pseudouridine synthase C MID13_11865 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 MID13_11875 PF03806 AbgT putative transporter family MID13_11880 PF00444 Ribosomal protein L36 MID13_11885 PF01197 Ribosomal protein L31 MID13_11890 PF01980 tRNA-methyltransferase O MID13_11890 PF18389 TrmO C-terminal domain MID13_11895 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MID13_11895 PF04073 Aminoacyl-tRNA editing domain MID13_11895 PF03129 Anticodon binding domain MID13_11910 PF06786 Uncharacterised protein family (UPF0253) MID13_11925 PF00464 Serine hydroxymethyltransferase MID13_11945 PF16657 Maltogenic Amylase, C-terminal domain MID13_11945 PF00128 Alpha amylase, catalytic domain MID13_11950 PF00367 phosphotransferase system, EIIB MID13_11950 PF02378 Phosphotransferase system, EIIC MID13_11955 PF00356 Bacterial regulatory proteins, lacI family MID13_11970 PF00005 ABC transporter MID13_11970 PF09383 NIL domain MID13_11975 PF00528 Binding-protein-dependent transport system inner membrane component MID13_11980 PF03180 NLPA lipoprotein MID13_11985 PF02264 LamB porin MID13_11990 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) MID13_11995 PF07348 Syd protein (SUKH-2) MID13_12000 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term MID13_12000 PF14489 QueF-like protein MID13_12010 PF00990 Diguanylate cyclase, GGDEF domain MID13_12015 PF03641 Possible lysine decarboxylase MID13_12015 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases MID13_12015 PF11892 Domain of unknown function (DUF3412) MID13_12020 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MID13_12020 PF01367 5'-3' exonuclease, C-terminal SAM fold MID13_12025 PF01223 DNA/RNA non-specific endonuclease MID13_12030 PF18125 RlmM ferredoxin-like domain MID13_12030 PF01728 FtsJ-like methyltransferase MID13_12035 PF04241 Protein of unknown function (DUF423) MID13_12045 PF03466 LysR substrate binding domain MID13_12045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_12050 PF02926 THUMP domain MID13_12050 PF02568 Thiamine biosynthesis protein (ThiI) MID13_12055 PF13677 Membrane MotB of proton-channel complex MotA/MotB MID13_12055 PF00691 OmpA family MID13_12065 PF02609 Exonuclease VII small subunit MID13_12070 PF00348 Polyprenyl synthetase MID13_12075 PF13292 1-deoxy-D-xylulose-5-phosphate synthase MID13_12075 PF02779 Transketolase, pyrimidine binding domain MID13_12075 PF02780 Transketolase, C-terminal domain MID13_12085 PF04608 Phosphatidylglycerophosphatase A MID13_12090 PF02769 AIR synthase related protein, C-terminal domain MID13_12090 PF00586 AIR synthase related protein, N-terminal domain MID13_12095 PF01029 NusB family MID13_12100 PF00885 6,7-dimethyl-8-ribityllumazine synthase MID13_12105 PF00925 GTP cyclohydrolase II MID13_12105 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MID13_12110 PF00677 Lumazine binding domain MID13_12115 PF01872 RibD C-terminal domain MID13_12115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MID13_12120 PF03477 ATP cone domain MID13_12125 PF00171 Aldehyde dehydrogenase family MID13_12130 PF00696 Amino acid kinase family MID13_12130 PF01472 PUA domain MID13_12135 PF07417 Sigma factor-binding transcriptional regulator Crl MID13_12140 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) MID13_12145 PF00156 Phosphoribosyl transferase domain MID13_12150 PF00860 Permease family MID13_12155 PF07687 Peptidase dimerisation domain MID13_12155 PF01546 Peptidase family M20/M25/M40 MID13_12175 PF00962 Adenosine/AMP deaminase MID13_12190 PF01588 Putative tRNA binding domain MID13_12195 PF00356 Bacterial regulatory proteins, lacI family MID13_12200 PF01263 Aldose 1-epimerase MID13_12205 PF08544 GHMP kinases C terminal MID13_12205 PF00288 GHMP kinases N terminal domain MID13_12205 PF10509 Galactokinase galactose-binding signature MID13_12210 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain MID13_12210 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain MID13_12215 PF16363 GDP-mannose 4,6 dehydratase MID13_12220 PF00356 Bacterial regulatory proteins, lacI family MID13_12225 PF02929 Beta galactosidase small chain MID13_12225 PF16353 Domain of unknown function(DUF4981) MID13_12225 PF00703 Glycosyl hydrolases family 2 MID13_12225 PF02836 Glycosyl hydrolases family 2, TIM barrel domain MID13_12225 PF02837 Glycosyl hydrolases family 2, sugar binding domain MID13_12230 PF04074 YhcH/YjgK/YiaL MID13_12235 PF13520 Amino acid permease MID13_12240 PF13520 Amino acid permease MID13_12250 PF01204 Trehalase MID13_12265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_12265 PF03466 LysR substrate binding domain MID13_12270 PF02417 Chromate transporter MID13_12300 PF00437 Type II/IV secretion system protein MID13_12330 PF00263 Bacterial type II and III secretion system protein MID13_12330 PF04972 BON domain MID13_12330 PF13629 Pilus formation protein N terminal region MID13_12355 PF12833 Helix-turn-helix domain MID13_12355 PF02311 AraC-like ligand binding domain MID13_12360 PF00501 AMP-binding enzyme MID13_12370 PF03466 LysR substrate binding domain MID13_12370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_12375 PF09905 DNA-binding protein VF530 MID13_12380 PF00679 Elongation factor G C-terminus MID13_12380 PF14492 Elongation Factor G, domain II MID13_12380 PF03764 Elongation factor G, domain IV MID13_12380 PF00009 Elongation factor Tu GTP binding domain MID13_12380 PF03144 Elongation factor Tu domain 2 MID13_12385 PF18073 Rubredoxin metal binding domain MID13_12395 PF18429 Domain of unknown function (DUF5609) MID13_12405 PF01048 Phosphorylase superfamily MID13_12410 PF01676 Metalloenzyme superfamily MID13_12415 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain MID13_12415 PF02885 Glycosyl transferase family, helical bundle domain MID13_12415 PF00591 Glycosyl transferase family, a/b domain MID13_12420 PF01791 DeoC/LacD family aldolase MID13_12425 PF01773 Na+ dependent nucleoside transporter N-terminus MID13_12425 PF07670 Nucleoside recognition MID13_12425 PF07662 Na+ dependent nucleoside transporter C-terminus MID13_12430 PF01026 TatD related DNase MID13_12440 PF00009 Elongation factor Tu GTP binding domain MID13_12440 PF03144 Elongation factor Tu domain 2 MID13_12440 PF16658 Class II release factor RF3, C-terminal domain MID13_12445 PF00583 Acetyltransferase (GNAT) family MID13_12460 PF02036 SCP-2 sterol transfer family MID13_12465 PF00563 EAL domain MID13_12465 PF00990 Diguanylate cyclase, GGDEF domain MID13_12465 PF03707 Bacterial signalling protein N terminal repeat MID13_12470 PF01136 Peptidase family U32 MID13_12475 PF01136 Peptidase family U32 MID13_12480 PF01554 MatE MID13_12490 PF07719 Tetratricopeptide repeat MID13_12490 PF13181 Tetratricopeptide repeat MID13_12495 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MID13_12495 PF00575 S1 RNA binding domain MID13_12495 PF03725 3' exoribonuclease family, domain 2 MID13_12495 PF01138 3' exoribonuclease family, domain 1 MID13_12495 PF00013 KH domain MID13_12500 PF00312 Ribosomal protein S15 MID13_12505 PF16198 tRNA pseudouridylate synthase B C-terminal domain MID13_12505 PF01509 TruB family pseudouridylate synthase (N terminal domain) MID13_12505 PF09157 Pseudouridine synthase II TruB, C-terminal MID13_12510 PF02033 Ribosome-binding factor A MID13_12515 PF11987 Translation-initiation factor 2 MID13_12515 PF00009 Elongation factor Tu GTP binding domain MID13_12515 PF04760 Translation initiation factor IF-2, N-terminal region MID13_12515 PF08364 Bacterial translation initiation factor IF-2 associated region MID13_12520 PF00575 S1 RNA binding domain MID13_12520 PF08529 NusA N-terminal domain MID13_12520 PF13184 NusA-like KH domain MID13_12525 PF17384 RimP C-terminal SH3 domain MID13_12525 PF02576 RimP N-terminal domain MID13_12540 PF03840 Preprotein translocase SecG subunit MID13_12545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MID13_12545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MID13_12545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MID13_12545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MID13_12550 PF00809 Pterin binding enzyme MID13_12555 PF00004 ATPase family associated with various cellular activities (AAA) MID13_12555 PF06480 FtsH Extracellular MID13_12555 PF01434 Peptidase family M41 MID13_12555 PF17862 AAA+ lid domain MID13_12560 PF01728 FtsJ-like methyltransferase MID13_12565 PF01985 CRS1 / YhbY (CRM) domain MID13_12570 PF01272 Transcription elongation factor, GreA/GreB, C-term MID13_12570 PF03449 Transcription elongation factor, N-terminal MID13_12575 PF13609 Gram-negative porin MID13_12580 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family MID13_12585 PF01769 Divalent cation transporter MID13_12585 PF00571 CBS domain MID13_12585 PF03448 MgtE intracellular N domain MID13_12590 PF00579 tRNA synthetases class I (W and Y) MID13_12595 PF01551 Peptidase family M23 MID13_12595 PF08525 Opacity-associated protein A N-terminal motif MID13_12595 PF01476 LysM domain MID13_12600 PF00873 AcrB/AcrD/AcrF family MID13_12610 PF01521 Iron-sulphur cluster biosynthesis MID13_12615 PF00202 Aminotransferase class-III MID13_12620 PF01594 AI-2E family transporter MID13_12625 PF05175 Methyltransferase small domain MID13_12625 PF08468 Methyltransferase small domain N-terminal MID13_12630 PF01627 Hpt domain MID13_12630 PF00072 Response regulator receiver domain MID13_12630 PF17149 Periplasmic sensor domain found in signal transduction proteins MID13_12630 PF00672 HAMP domain MID13_12630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_12630 PF00512 His Kinase A (phospho-acceptor) domain MID13_12635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID13_12640 PF00528 Binding-protein-dependent transport system inner membrane component MID13_12645 PF12911 N-terminal TM domain of oligopeptide transport permease C MID13_12645 PF00528 Binding-protein-dependent transport system inner membrane component MID13_12650 PF00005 ABC transporter MID13_12650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_12655 PF00005 ABC transporter MID13_12655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_12665 PF01869 BadF/BadG/BcrA/BcrD ATPase family MID13_12670 PF02838 Glycosyl hydrolase family 20, domain 2 MID13_12670 PF00728 Glycosyl hydrolase family 20, catalytic domain MID13_12675 PF06165 Glycosyltransferase family 36 MID13_12675 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain MID13_12680 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MID13_12680 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MID13_12680 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MID13_12680 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MID13_12685 PF08402 TOBE domain MID13_12685 PF00005 ABC transporter MID13_12695 PF13416 Bacterial extracellular solute-binding protein MID13_12700 PF00909 Ammonium Transporter Family MID13_12705 PF00543 Nitrogen regulatory protein P-II MID13_12710 PF06062 Uncharacterised protein family (UPF0231) MID13_12715 PF00330 Aconitase family (aconitate hydratase) MID13_12715 PF06434 Aconitate hydratase 2 N-terminus MID13_12715 PF11791 Aconitate B N-terminal domain MID13_12720 PF01734 Patatin-like phospholipase MID13_12725 PF00912 Transglycosylase MID13_12725 PF00905 Penicillin binding protein transpeptidase domain MID13_12725 PF14814 Bifunctional transglycosylase second domain MID13_12730 PF08482 ATP-dependent helicase C-terminal MID13_12730 PF00270 DEAD/DEAH box helicase MID13_12730 PF04408 Helicase associated domain (HA2) MID13_12730 PF00271 Helicase conserved C-terminal domain MID13_12735 PF17746 SfsA N-terminal OB domain MID13_12735 PF03749 Sugar fermentation stimulation protein RE domain MID13_12740 PF01258 Prokaryotic dksA/traR C4-type zinc finger MID13_12745 PF00749 tRNA synthetases class I (E and Q), catalytic domain MID13_12750 PF12627 Probable RNA and SrmB- binding site of polymerase A MID13_12750 PF01743 Poly A polymerase head domain MID13_12750 PF12626 Polymerase A arginine-rich C-terminus MID13_12755 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MID13_12760 PF02548 Ketopantoate hydroxymethyltransferase MID13_12765 PF02569 Pantoate-beta-alanine ligase MID13_12770 PF01061 ABC-2 type transporter MID13_12775 PF00005 ABC transporter MID13_12780 PF00916 Sulfate permease family MID13_12780 PF01740 STAS domain MID13_12785 PF00484 Carbonic anhydrase MID13_12790 PF00156 Phosphoribosyl transferase domain MID13_12795 PF00440 Bacterial regulatory proteins, tetR family MID13_12800 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_12800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID13_12805 PF02817 e3 binding domain MID13_12805 PF00364 Biotin-requiring enzyme MID13_12805 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MID13_12810 PF17831 Pyruvate dehydrogenase E1 component middle domain MID13_12810 PF00456 Transketolase, thiamine diphosphate binding domain MID13_12815 PF07729 FCD domain MID13_12815 PF00392 Bacterial regulatory proteins, gntR family MID13_12820 PF01510 N-acetylmuramoyl-L-alanine amidase MID13_12825 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain MID13_12825 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain MID13_12830 PF07963 Prokaryotic N-terminal methylation motif MID13_12830 PF00114 Pilin (bacterial filament) MID13_12835 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain MID13_12835 PF00437 Type II/IV secretion system protein MID13_12840 PF00482 Type II secretion system (T2SS), protein F MID13_12845 PF01478 Type IV leader peptidase family MID13_12845 PF06750 Bacterial Peptidase A24 N-terminal domain MID13_12850 PF01121 Dephospho-CoA kinase MID13_12855 PF07072 Cell division protein MID13_12860 PF03884 DNA gyrase inhibitor YacG MID13_12865 PF01245 Ribosomal protein L19 MID13_12870 PF01746 tRNA (Guanine-1)-methyltransferase MID13_12875 PF05239 PRC-barrel domain MID13_12875 PF01782 RimM N-terminal domain MID13_12880 PF00886 Ribosomal protein S16 MID13_12885 PF00448 SRP54-type protein, GTPase domain MID13_12885 PF02881 SRP54-type protein, helical bundle domain MID13_12885 PF02978 Signal peptide binding domain MID13_12890 PF01578 Cytochrome C assembly protein MID13_12895 PF00571 CBS domain MID13_12895 PF03471 Transporter associated domain MID13_12895 PF01595 Cyclin M transmembrane N-terminal domain MID13_12900 PF02664 S-Ribosylhomocysteinase (LuxS) MID13_12910 PF04262 Glutamate-cysteine ligase MID13_12915 PF00675 Insulinase (Peptidase family M16) MID13_12915 PF05193 Peptidase M16 inactive domain MID13_12920 PF09335 SNARE associated Golgi protein MID13_12925 PF08240 Alcohol dehydrogenase GroES-like domain MID13_12925 PF00107 Zinc-binding dehydrogenase MID13_12930 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit MID13_12935 PF02436 Conserved carboxylase domain MID13_12935 PF00364 Biotin-requiring enzyme MID13_12935 PF00682 HMGL-like MID13_12940 PF04277 Oxaloacetate decarboxylase, gamma chain MID13_12995 PF02599 Global regulator protein family MID13_13000 PF00696 Amino acid kinase family MID13_13000 PF01842 ACT domain MID13_13000 PF13840 ACT domain MID13_13005 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MID13_13005 PF01411 tRNA synthetases class II (A) MID13_13005 PF02272 DHHA1 domain MID13_13010 PF00154 recA bacterial DNA recombination protein MID13_13015 PF02464 Competence-damaged protein MID13_13020 PF00488 MutS domain V MID13_13020 PF05188 MutS domain II MID13_13020 PF05190 MutS family domain IV MID13_13020 PF05192 MutS domain III MID13_13020 PF01624 MutS domain I MID13_13025 PF00140 Sigma-70 factor, region 1.2 MID13_13025 PF04542 Sigma-70 region 2 MID13_13025 PF04539 Sigma-70 region 3 MID13_13025 PF04545 Sigma-70, region 4 MID13_13030 PF01476 LysM domain MID13_13030 PF01551 Peptidase family M23 MID13_13040 PF01975 Survival protein SurE MID13_13045 PF01142 tRNA pseudouridine synthase D (TruD) MID13_13050 PF02542 YgbB family MID13_13055 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MID13_13060 PF04977 Septum formation initiator MID13_13065 PF03952 Enolase, N-terminal domain MID13_13065 PF00113 Enolase, C-terminal TIM barrel domain MID13_13070 PF00117 Glutamine amidotransferase class-I MID13_13070 PF06418 CTP synthase N-terminus MID13_13075 PF03819 MazG nucleotide pyrophosphohydrolase domain MID13_13085 PF05958 tRNA (Uracil-5-)-methyltransferase MID13_13085 PF01938 TRAM domain MID13_13090 PF00072 Response regulator receiver domain MID13_13090 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MID13_13090 PF01627 Hpt domain MID13_13090 PF00512 His Kinase A (phospho-acceptor) domain MID13_13090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_13090 PF00672 HAMP domain MID13_13095 PF01648 4'-phosphopantetheinyl transferase superfamily MID13_13100 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ MID13_13105 PF02565 Recombination protein O C terminal MID13_13105 PF11967 Recombination protein O N terminal MID13_13110 PF07650 KH domain MID13_13110 PF01926 50S ribosome-binding GTPase MID13_13115 PF14622 Ribonuclease-III-like MID13_13115 PF00035 Double-stranded RNA binding motif MID13_13120 PF10502 Signal peptidase, peptidase S26 MID13_13125 PF00679 Elongation factor G C-terminus MID13_13125 PF00009 Elongation factor Tu GTP binding domain MID13_13125 PF03144 Elongation factor Tu domain 2 MID13_13125 PF06421 GTP-binding protein LepA C-terminus MID13_13135 PF03888 MucB/RseB N-terminal domain MID13_13135 PF17188 MucB/RseB C-terminal domain MID13_13140 PF03872 Anti sigma-E protein RseA, N-terminal domain MID13_13140 PF03873 Anti sigma-E protein RseA, C-terminal domain MID13_13145 PF08281 Sigma-70, region 4 MID13_13145 PF04542 Sigma-70 region 2 MID13_13150 PF02910 Fumarate reductase flavoprotein C-term MID13_13150 PF00890 FAD binding domain MID13_13155 PF03937 Flavinator of succinate dehydrogenase MID13_13175 PF01494 FAD binding domain MID13_13180 PF01494 FAD binding domain MID13_13185 PF03695 Uncharacterised protein family (UPF0149) MID13_13190 PF05164 Cell division protein ZapA MID13_13200 PF01812 5-formyltetrahydrofolate cyclo-ligase family MID13_13205 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MID13_13210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID13_13210 PF01842 ACT domain MID13_13210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MID13_13220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_13220 PF03466 LysR substrate binding domain MID13_13225 PF01810 LysE type translocator MID13_13235 PF00924 Mechanosensitive ion channel MID13_13235 PF05552 Conserved TM helix MID13_13240 PF01116 Fructose-bisphosphate aldolase class-II MID13_13245 PF00162 Phosphoglycerate kinase MID13_13250 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MID13_13250 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MID13_13255 PF00456 Transketolase, thiamine diphosphate binding domain MID13_13255 PF02780 Transketolase, C-terminal domain MID13_13255 PF02779 Transketolase, pyrimidine binding domain MID13_13260 PF02773 S-adenosylmethionine synthetase, C-terminal domain MID13_13260 PF02772 S-adenosylmethionine synthetase, central domain MID13_13260 PF00438 S-adenosylmethionine synthetase, N-terminal domain MID13_13270 PF10263 SprT-like family MID13_13270 PF17283 SprT-like zinc ribbon domain MID13_13275 PF04231 Endonuclease I MID13_13285 PF04452 RNA methyltransferase MID13_13290 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain MID13_13290 PF02951 Prokaryotic glutathione synthetase, N-terminal domain MID13_13295 PF02622 Uncharacterized ACR, COG1678 MID13_13300 PF03652 Holliday junction resolvase MID13_13310 PF00437 Type II/IV secretion system protein MID13_13315 PF00437 Type II/IV secretion system protein MID13_13320 PF01168 Alanine racemase, N-terminal domain MID13_13325 PF03807 NADP oxidoreductase coenzyme F420-dependent MID13_13325 PF14748 Pyrroline-5-carboxylate reductase dimerisation MID13_13330 PF02325 YGGT family MID13_13335 PF02594 Uncharacterised ACR, YggU family COG1872 MID13_13345 PF01725 Ham1 family MID13_13350 PF06969 HemN C-terminal domain MID13_13350 PF04055 Radical SAM superfamily MID13_13355 PF04960 Glutaminase MID13_13360 PF02390 Putative methyltransferase MID13_13365 PF00730 HhH-GPD superfamily base excision DNA repair protein MID13_13365 PF14815 NUDIX domain MID13_13365 PF00633 Helix-hairpin-helix motif MID13_13370 PF04362 Bacterial Fe(2+) trafficking MID13_13375 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain MID13_13375 PF01464 Transglycosylase SLT domain MID13_13415 PF00672 HAMP domain MID13_13415 PF12729 Four helix bundle sensory module for signal transduction MID13_13415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_13530 PF03739 Lipopolysaccharide export system permease LptF/LptG MID13_13535 PF03739 Lipopolysaccharide export system permease LptF/LptG MID13_13540 PF02789 Cytosol aminopeptidase family, N-terminal domain MID13_13540 PF00883 Cytosol aminopeptidase family, catalytic domain MID13_13545 PF04364 DNA polymerase III chi subunit, HolC MID13_13550 PF08264 Anticodon-binding domain of tRNA MID13_13550 PF00133 tRNA synthetases class I (I, L, M and V) MID13_13550 PF10458 Valyl tRNA synthetase tRNA binding arm MID13_13555 PF13181 Tetratricopeptide repeat MID13_13555 PF01435 Peptidase family M48 MID13_13560 PF05987 Bacterial protein of unknown function (DUF898) MID13_13570 PF00583 Acetyltransferase (GNAT) family MID13_13580 PF06877 Regulator of ribonuclease activity B MID13_13590 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MID13_13590 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MID13_13595 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MID13_13595 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MID13_13600 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain MID13_13600 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain MID13_13605 PF01042 Endoribonuclease L-PSP MID13_13610 PF01553 Acyltransferase MID13_13615 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MID13_13620 PF01722 BolA-like protein MID13_13630 PF05494 MlaC protein MID13_13635 PF02470 MlaD protein MID13_13640 PF02405 Permease MlaE MID13_13645 PF00005 ABC transporter MID13_13650 PF01699 Sodium/calcium exchanger protein MID13_13655 PF00571 CBS domain MID13_13655 PF01380 SIS domain MID13_13670 PF03968 OstA-like protein MID13_13675 PF00005 ABC transporter MID13_13675 PF12399 Branched-chain amino acid ATP-binding cassette transporter MID13_13680 PF00309 Sigma-54 factor, Activator interacting domain (AID) MID13_13680 PF04963 Sigma-54 factor, core binding domain MID13_13680 PF04552 Sigma-54, DNA binding domain MID13_13685 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MID13_13690 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MID13_13695 PF03668 P-loop ATPase protein family MID13_13700 PF00381 PTS HPr component phosphorylation site MID13_13705 PF00571 CBS domain MID13_13705 PF03448 MgtE intracellular N domain MID13_13705 PF01769 Divalent cation transporter MID13_13710 PF01523 Putative modulator of DNA gyrase MID13_13715 PF04751 Protein of unknown function (DUF615) MID13_13720 PF00005 ABC transporter MID13_13725 PF00528 Binding-protein-dependent transport system inner membrane component MID13_13735 PF02441 Flavoprotein MID13_13740 PF01225 Mur ligase family, catalytic domain MID13_13740 PF02875 Mur ligase family, glutamate ligase domain MID13_13740 PF08245 Mur ligase middle domain MID13_13745 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain MID13_13755 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like MID13_13760 PF04357 TamB, inner membrane protein subunit of TAM complex MID13_13765 PF01103 Surface antigen MID13_13765 PF07244 Surface antigen variable number repeat MID13_13765 PF17243 POTRA domain TamA domain 1 MID13_13770 PF01625 Peptide methionine sulfoxide reductase MID13_13775 PF06526 Protein of unknown function (DUF1107) MID13_13780 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) MID13_13785 PF10795 Protein of unknown function (DUF2607) MID13_13795 PF00005 ABC transporter MID13_13820 PF03600 Citrate transporter MID13_13820 PF02080 TrkA-C domain MID13_13825 PF00009 Elongation factor Tu GTP binding domain MID13_13830 PF01507 Phosphoadenosine phosphosulfate reductase family MID13_13835 PF02872 5'-nucleotidase, C-terminal domain MID13_13835 PF00149 Calcineurin-like phosphoesterase MID13_13880 PF13673 Acetyltransferase (GNAT) domain MID13_13890 PF08525 Opacity-associated protein A N-terminal motif MID13_13890 PF04225 Opacity-associated protein A LysM-like domain MID13_13895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MID13_13895 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MID13_13915 PF01196 Ribosomal protein L17 MID13_13920 PF01000 RNA polymerase Rpb3/RpoA insert domain MID13_13920 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MID13_13920 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MID13_13925 PF00163 Ribosomal protein S4/S9 N-terminal domain MID13_13925 PF01479 S4 domain MID13_13930 PF00411 Ribosomal protein S11 MID13_13935 PF00416 Ribosomal protein S13/S18 MID13_13940 PF00444 Ribosomal protein L36 MID13_13945 PF00344 SecY translocase MID13_13950 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MID13_13955 PF00327 Ribosomal protein L30p/L7e MID13_13960 PF00333 Ribosomal protein S5, N-terminal domain MID13_13960 PF03719 Ribosomal protein S5, C-terminal domain MID13_13965 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MID13_13970 PF00347 Ribosomal protein L6 MID13_13975 PF00410 Ribosomal protein S8 MID13_13980 PF00253 Ribosomal protein S14p/S29e MID13_13985 PF00281 Ribosomal protein L5 MID13_13985 PF00673 ribosomal L5P family C-terminus MID13_13990 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MID13_13990 PF00467 KOW motif MID13_13995 PF00238 Ribosomal protein L14p/L23e MID13_14000 PF00366 Ribosomal protein S17 MID13_14005 PF00831 Ribosomal L29 protein MID13_14010 PF00252 Ribosomal protein L16p/L10e MID13_14015 PF00189 Ribosomal protein S3, C-terminal domain MID13_14015 PF07650 KH domain MID13_14020 PF00237 Ribosomal protein L22p/L17e MID13_14025 PF00203 Ribosomal protein S19 MID13_14030 PF03947 Ribosomal Proteins L2, C-terminal domain MID13_14030 PF00181 Ribosomal Proteins L2, RNA binding domain MID13_14035 PF00276 Ribosomal protein L23 MID13_14040 PF00573 Ribosomal protein L4/L1 family MID13_14045 PF00297 Ribosomal protein L3 MID13_14050 PF00338 Ribosomal protein S10p/S20e MID13_14055 PF03144 Elongation factor Tu domain 2 MID13_14055 PF00009 Elongation factor Tu GTP binding domain MID13_14055 PF03143 Elongation factor Tu C-terminal domain MID13_14060 PF03144 Elongation factor Tu domain 2 MID13_14060 PF00009 Elongation factor Tu GTP binding domain MID13_14060 PF14492 Elongation Factor G, domain II MID13_14060 PF00679 Elongation factor G C-terminus MID13_14060 PF03764 Elongation factor G, domain IV MID13_14065 PF00177 Ribosomal protein S7p/S5e MID13_14070 PF00164 Ribosomal protein S12/S23 MID13_14080 PF02635 DsrE/DsrF-like family MID13_14085 PF02635 DsrE/DsrF-like family MID13_14090 PF08348 YheO-like PAS domain MID13_14090 PF13309 HTH domain MID13_14095 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MID13_14095 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MID13_14105 PF04102 SlyX MID13_14110 PF01112 Asparaginase MID13_14115 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MID13_14125 PF02254 TrkA-N domain MID13_14125 PF00999 Sodium/hydrogen exchanger family MID13_14130 PF02525 Flavodoxin-like fold MID13_14135 PF12848 ABC transporter MID13_14135 PF00005 ABC transporter MID13_14145 PF00561 alpha/beta hydrolase fold MID13_14150 PF06794 Uncharacterised protein family (UPF0270) MID13_14155 PF00485 Phosphoribulokinase / Uridine kinase family MID13_14160 PF13545 Crp-like helix-turn-helix domain MID13_14160 PF00027 Cyclic nucleotide-binding domain MID13_14170 PF00171 Aldehyde dehydrogenase family MID13_14175 PF04958 Arginine N-succinyltransferase beta subunit MID13_14180 PF00202 Aminotransferase class-III MID13_14185 PF00117 Glutamine amidotransferase class-I MID13_14190 PF04231 Endonuclease I MID13_14210 PF00579 tRNA synthetases class I (W and Y) MID13_14215 PF13419 Haloacid dehalogenase-like hydrolase MID13_14220 PF00834 Ribulose-phosphate 3 epimerase family MID13_14225 PF02086 D12 class N6 adenine-specific DNA methyltransferase MID13_14235 PF01761 3-dehydroquinate synthase MID13_14240 PF01202 Shikimate kinase MID13_14245 PF07660 Secretin and TonB N terminus short domain MID13_14245 PF03958 Bacterial type II/III secretion system short domain MID13_14245 PF00263 Bacterial type II and III secretion system protein MID13_14245 PF11741 AMIN domain MID13_14270 PF17092 Penicillin-binding protein OB-like domain MID13_14270 PF00912 Transglycosylase MID13_14270 PF00905 Penicillin binding protein transpeptidase domain MID13_14275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_14275 PF03466 LysR substrate binding domain MID13_14280 PF00462 Glutaredoxin MID13_14280 PF08534 Redoxin MID13_14285 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_14285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID13_14290 PF01042 Endoribonuclease L-PSP MID13_14300 PF00583 Acetyltransferase (GNAT) family MID13_14300 PF14698 Argininosuccinate lyase C-terminal MID13_14300 PF00206 Lyase MID13_14305 PF00764 Arginosuccinate synthase MID13_14310 PF00696 Amino acid kinase family MID13_14315 PF01118 Semialdehyde dehydrogenase, NAD binding domain MID13_14315 PF02774 Semialdehyde dehydrogenase, dimerisation domain MID13_14320 PF01546 Peptidase family M20/M25/M40 MID13_14320 PF07687 Peptidase dimerisation domain MID13_14325 PF00311 Phosphoenolpyruvate carboxylase MID13_14335 PF02219 Methylenetetrahydrofolate reductase MID13_14340 PF00696 Amino acid kinase family MID13_14340 PF00742 Homoserine dehydrogenase MID13_14340 PF03447 Homoserine dehydrogenase, NAD binding domain MID13_14345 PF01053 Cys/Met metabolism PLP-dependent enzyme MID13_14350 PF01340 Met Apo-repressor, MetJ MID13_14355 PF03949 Malic enzyme, NAD binding domain MID13_14355 PF00390 Malic enzyme, N-terminal domain MID13_14360 PF01197 Ribosomal protein L31 MID13_14365 PF17764 3′ DNA-binding domain (3′BD) MID13_14365 PF18074 Primosomal protein N C-terminal domain MID13_14365 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MID13_14365 PF00271 Helicase conserved C-terminal domain MID13_14365 PF00270 DEAD/DEAH box helicase MID13_14370 PF00356 Bacterial regulatory proteins, lacI family MID13_14380 PF00227 Proteasome subunit MID13_14385 PF07724 AAA domain (Cdc48 subfamily) MID13_14385 PF00004 ATPase family associated with various cellular activities (AAA) MID13_14390 PF01040 UbiA prenyltransferase family MID13_14395 PF03737 Aldolase/RraA MID13_14400 PF06005 Cell division protein ZapB MID13_14405 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded MID13_14420 PF05656 Protein of unknown function (DUF805) MID13_14430 PF00121 Triosephosphate isomerase MID13_14435 PF00365 Phosphofructokinase MID13_14440 PF16916 Dimerisation domain of Zinc Transporter MID13_14440 PF01545 Cation efflux family MID13_14450 PF00072 Response regulator receiver domain MID13_14450 PF00486 Transcriptional regulatory protein, C terminal MID13_14455 PF00512 His Kinase A (phospho-acceptor) domain MID13_14455 PF00672 HAMP domain MID13_14455 PF16527 Two-component sensor protein CpxA, periplasmic domain MID13_14455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_14460 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MID13_14460 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MID13_14465 PF00588 SpoU rRNA Methylase family MID13_14470 PF04186 FxsA cytoplasmic membrane protein MID13_14475 PF10415 Fumarase C C-terminus MID13_14475 PF00206 Lyase MID13_14480 PF03605 Anaerobic c4-dicarboxylate membrane transporter MID13_14485 PF03606 C4-dicarboxylate anaerobic carrier MID13_14495 PF00696 Amino acid kinase family MID13_14500 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MID13_14500 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MID13_14505 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MID13_14505 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MID13_14510 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain MID13_14510 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain MID13_14515 PF01316 Arginine repressor, DNA binding domain MID13_14515 PF02863 Arginine repressor, C-terminal domain MID13_14520 PF11412 Disulphide bond corrector protein DsbC MID13_14520 PF02683 Cytochrome C biogenesis protein transmembrane region MID13_14525 PF00196 Bacterial regulatory proteins, luxR family MID13_14525 PF00072 Response regulator receiver domain MID13_14530 PF03471 Transporter associated domain MID13_14530 PF00999 Sodium/hydrogen exchanger family MID13_14530 PF02080 TrkA-C domain MID13_14540 PF00474 Sodium:solute symporter family MID13_14550 PF10415 Fumarase C C-terminus MID13_14550 PF00206 Lyase MID13_14555 PF00512 His Kinase A (phospho-acceptor) domain MID13_14555 PF00072 Response regulator receiver domain MID13_14555 PF01627 Hpt domain MID13_14555 PF00672 HAMP domain MID13_14555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_14560 PF12832 MFS_1 like family MID13_14575 PF16177 Acetyl-coenzyme A synthetase N-terminus MID13_14575 PF00501 AMP-binding enzyme MID13_14575 PF13193 AMP-binding enzyme C-terminal domain MID13_14580 PF01220 Dehydroquinase class II MID13_14585 PF00364 Biotin-requiring enzyme MID13_14590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MID13_14590 PF02785 Biotin carboxylase C-terminal domain MID13_14590 PF00289 Biotin carboxylase, N-terminal domain MID13_14600 PF01207 Dihydrouridine synthase (Dus) MID13_14605 PF02954 Bacterial regulatory protein, Fis family MID13_14610 PF13411 MerR HTH family regulatory protein MID13_14615 PF02142 MGS-like domain MID13_14615 PF01808 AICARFT/IMPCHase bienzyme MID13_14620 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MID13_14620 PF02844 Phosphoribosylglycinamide synthetase, N domain MID13_14620 PF02843 Phosphoribosylglycinamide synthetase, C domain MID13_14630 PF00216 Bacterial DNA-binding protein MID13_14635 PF00571 CBS domain MID13_14635 PF01595 Cyclin M transmembrane N-terminal domain MID13_14640 PF04222 Protein of unknown function (DUF416) MID13_14650 PF03167 Uracil DNA glycosylase superfamily MID13_14655 PF01208 Uroporphyrinogen decarboxylase (URO-D) MID13_14660 PF00293 NUDIX domain MID13_14660 PF09297 NADH pyrophosphatase zinc ribbon domain MID13_14665 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ MID13_14670 PF05000 RNA polymerase Rpb1, domain 4 MID13_14670 PF04997 RNA polymerase Rpb1, domain 1 MID13_14670 PF00623 RNA polymerase Rpb1, domain 2 MID13_14670 PF04983 RNA polymerase Rpb1, domain 3 MID13_14670 PF04998 RNA polymerase Rpb1, domain 5 MID13_14680 PF16320 Ribosomal protein L7/L12 dimerisation domain MID13_14680 PF00542 Ribosomal protein L7/L12 C-terminal domain MID13_14685 PF00466 Ribosomal protein L10 MID13_14690 PF00687 Ribosomal protein L1p/L10e family MID13_14695 PF03946 Ribosomal protein L11, N-terminal domain MID13_14695 PF00298 Ribosomal protein L11, RNA binding domain MID13_14700 PF00467 KOW motif MID13_14700 PF02357 Transcription termination factor nusG MID13_14705 PF00584 SecE/Sec61-gamma subunits of protein translocation complex MID13_14710 PF03144 Elongation factor Tu domain 2 MID13_14710 PF03143 Elongation factor Tu C-terminal domain MID13_14710 PF00009 Elongation factor Tu GTP binding domain MID13_14735 PF00485 Phosphoribulokinase / Uridine kinase family MID13_14740 PF02237 Biotin protein ligase C terminal domain MID13_14740 PF08279 HTH domain MID13_14740 PF03099 Biotin/lipoate A/B protein ligase family MID13_14745 PF01565 FAD binding domain MID13_14745 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MID13_14755 PF13091 PLD-like domain MID13_14840 PF01177 Asp/Glu/Hydantoin racemase MID13_14850 PF07715 TonB-dependent Receptor Plug Domain MID13_14850 PF00593 TonB dependent receptor MID13_14855 PF05958 tRNA (Uracil-5-)-methyltransferase MID13_14865 PF00440 Bacterial regulatory proteins, tetR family MID13_14870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID13_14870 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_14875 PF01554 MatE MID13_14880 PF04072 Leucine carboxyl methyltransferase MID13_14885 PF00717 Peptidase S24-like MID13_14885 PF01726 LexA DNA binding domain MID13_14890 PF01219 Prokaryotic diacylglycerol kinase MID13_14895 PF01553 Acyltransferase MID13_14900 PF01040 UbiA prenyltransferase family MID13_14905 PF04345 Chorismate lyase MID13_14910 PF03748 Flagellar basal body-associated protein FliL MID13_14915 PF01694 Rhomboid family MID13_14915 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease MID13_14920 PF00581 Rhodanese-like domain MID13_14925 PF04545 Sigma-70, region 4 MID13_14925 PF00140 Sigma-70 factor, region 1.2 MID13_14925 PF04542 Sigma-70 region 2 MID13_14930 PF18075 FtsX extracellular domain MID13_14935 PF00005 ABC transporter MID13_14940 PF00448 SRP54-type protein, GTPase domain MID13_14940 PF02881 SRP54-type protein, helical bundle domain MID13_14955 PF01914 MarC family integral membrane protein MID13_14995 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MID13_14995 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MID13_15000 PF01022 Bacterial regulatory protein, arsR family MID13_15005 PF08668 HDOD domain MID13_15005 PF00563 EAL domain MID13_15010 PF01810 LysE type translocator MID13_15015 PF12146 Serine aminopeptidase, S33 MID13_15035 PF03942 DTW domain MID13_15040 PF00563 EAL domain MID13_15040 PF08495 FIST N domain MID13_15040 PF10442 FIST C domain MID13_15040 PF00990 Diguanylate cyclase, GGDEF domain MID13_15045 PF00563 EAL domain MID13_15045 PF08495 FIST N domain MID13_15045 PF10442 FIST C domain MID13_15045 PF00990 Diguanylate cyclase, GGDEF domain MID13_15050 PF13419 Haloacid dehalogenase-like hydrolase MID13_15055 PF00589 Phage integrase family MID13_15055 PF02899 Phage integrase, N-terminal SAM-like domain MID13_15065 PF01678 Diaminopimelate epimerase MID13_15070 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MID13_15070 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MID13_15080 PF01491 Frataxin-like domain MID13_15085 PF12633 Adenylate cyclase NT domain MID13_15085 PF01295 Adenylate cyclase, class-I MID13_15090 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MID13_15090 PF03900 Porphobilinogen deaminase, C-terminal domain MID13_15095 PF02602 Uroporphyrinogen-III synthase HemD MID13_15100 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase MID13_15105 PF07219 HemY protein N-terminus MID13_15155 PF00175 Oxidoreductase NAD-binding domain MID13_15160 PF00111 2Fe-2S iron-sulfur cluster binding domain MID13_15160 PF00175 Oxidoreductase NAD-binding domain MID13_15165 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MID13_15180 PF00085 Thioredoxin MID13_15185 PF00271 Helicase conserved C-terminal domain MID13_15185 PF00270 DEAD/DEAH box helicase MID13_15190 PF02541 Ppx/GppA phosphatase family MID13_15195 PF02592 Putative vitamin uptake transporter MID13_15205 PF00270 DEAD/DEAH box helicase MID13_15205 PF16124 RecQ zinc-binding MID13_15205 PF00570 HRDC domain MID13_15205 PF09382 RQC domain MID13_15205 PF00271 Helicase conserved C-terminal domain MID13_15210 PF00892 EamA-like transporter family MID13_15215 PF02311 AraC-like ligand binding domain MID13_15215 PF12833 Helix-turn-helix domain MID13_15220 PF01810 LysE type translocator MID13_15230 PF08534 Redoxin MID13_15235 PF00580 UvrD/REP helicase N-terminal domain MID13_15235 PF13361 UvrD-like helicase C-terminal domain MID13_15245 PF05114 Protein of unknown function (DUF692) MID13_15265 PF07690 Major Facilitator Superfamily MID13_15270 PF03466 LysR substrate binding domain MID13_15270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_15275 PF00557 Metallopeptidase family M24 MID13_15275 PF01321 Creatinase/Prolidase N-terminal domain MID13_15275 PF00557 Metallopeptidase family M24 MID13_15275 PF01321 Creatinase/Prolidase N-terminal domain MID13_15280 PF06968 Biotin and Thiamin Synthesis associated domain MID13_15280 PF04055 Radical SAM superfamily MID13_15285 PF05690 Thiazole biosynthesis protein ThiG MID13_15290 PF02597 ThiS family MID13_15295 PF00899 ThiF family MID13_15300 PF02581 Thiamine monophosphate synthase MID13_15305 PF01964 Radical SAM ThiC family MID13_15305 PF13667 ThiC-associated domain MID13_15310 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MID13_15315 PF07732 Multicopper oxidase MID13_15315 PF07731 Multicopper oxidase MID13_15315 PF00394 Multicopper oxidase MID13_15360 PF00132 Bacterial transferase hexapeptide (six repeats) MID13_15365 PF07369 Protein of unknown function (DUF1488) MID13_15370 PF08501 Shikimate dehydrogenase substrate binding domain MID13_15370 PF01488 Shikimate / quinate 5-dehydrogenase MID13_15370 PF18317 Shikimate 5'-dehydrogenase C-terminal domain MID13_15375 PF01218 Coproporphyrinogen III oxidase MID13_15380 PF01300 Telomere recombination MID13_15385 PF00731 AIR carboxylase MID13_15390 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MID13_15390 PF02222 ATP-grasp domain MID13_15395 PF01396 Topoisomerase DNA binding C4 zinc finger MID13_15400 PF04361 Protein of unknown function (DUF494) MID13_15405 PF02481 DNA recombination-mediator protein A MID13_15405 PF17782 DprA winged helix domain MID13_15415 PF01327 Polypeptide deformylase MID13_15420 PF00551 Formyl transferase MID13_15420 PF02911 Formyl transferase, C-terminal domain MID13_15425 PF01029 NusB family MID13_15425 PF01189 16S rRNA methyltransferase RsmB/F MID13_15430 PF02080 TrkA-C domain MID13_15430 PF02254 TrkA-N domain MID13_15435 PF02386 Cation transport protein MID13_15445 PF03006 Haemolysin-III related MID13_15450 PF07070 SpoOM protein MID13_15460 PF06288 Protein of unknown function (DUF1040) MID13_15465 PF12801 4Fe-4S binding domain MID13_15465 PF13746 4Fe-4S dicluster domain MID13_15465 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase MID13_15475 PF01323 DSBA-like thioredoxin domain MID13_15485 PF01078 Magnesium chelatase, subunit ChlI MID13_15485 PF13335 Magnesium chelatase, subunit ChlI C-terminal MID13_15490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID13_15490 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID13_15490 PF00205 Thiamine pyrophosphate enzyme, central domain MID13_15500 PF01063 Amino-transferase class IV MID13_15505 PF00920 Dehydratase family MID13_15510 PF00585 C-terminal regulatory domain of Threonine dehydratase MID13_15510 PF00291 Pyridoxal-phosphate dependent enzyme MID13_15515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_15515 PF03466 LysR substrate binding domain MID13_15520 PF07690 Major Facilitator Superfamily MID13_15525 PF00990 Diguanylate cyclase, GGDEF domain MID13_15530 PF00132 Bacterial transferase hexapeptide (six repeats) MID13_15530 PF14602 Hexapeptide repeat of succinyl-transferase MID13_15530 PF12804 MobA-like NTP transferase domain MID13_15535 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MID13_15535 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain MID13_15540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MID13_15540 PF02874 ATP synthase alpha/beta family, beta-barrel domain MID13_15545 PF00231 ATP synthase MID13_15550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MID13_15550 PF02874 ATP synthase alpha/beta family, beta-barrel domain MID13_15550 PF00306 ATP synthase alpha/beta chain, C terminal domain MID13_15555 PF00213 ATP synthase delta (OSCP) subunit MID13_15560 PF00430 ATP synthase B/B' CF(0) MID13_15565 PF00137 ATP synthase subunit C MID13_15570 PF00119 ATP synthase A chain MID13_15575 PF03899 ATP synthase I chain MID13_15580 PF17762 HTH domain found in ParB protein MID13_15580 PF02195 ParB-like nuclease domain MID13_15585 PF13614 AAA domain MID13_15590 PF02527 rRNA small subunit methyltransferase G MID13_15595 PF13932 GidA associated domain MID13_15595 PF01134 Glucose inhibited division protein A MID13_15600 PF00258 Flavodoxin MID13_15605 PF01926 50S ribosome-binding GTPase MID13_15605 PF12631 MnmE helical domain MID13_15605 PF10396 GTP-binding protein TrmE N-terminus MID13_15610 PF02096 60Kd inner membrane protein MID13_15610 PF14849 YidC periplasmic domain MID13_15615 PF01809 Putative membrane protein insertion efficiency factor MID13_15620 PF00825 Ribonuclease P MID13_15625 PF00468 Ribosomal protein L34 MID13_15630 PF00005 ABC transporter MID13_15635 PF00528 Binding-protein-dependent transport system inner membrane component MID13_15640 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID13_15655 PF00664 ABC transporter transmembrane region MID13_15655 PF00005 ABC transporter MID13_15655 PF03412 Peptidase C39 family MID13_15670 PF00529 HlyD membrane-fusion protein of T1SS MID13_15675 PF00072 Response regulator receiver domain MID13_15675 PF00158 Sigma-54 interaction domain MID13_15675 PF02954 Bacterial regulatory protein, Fis family MID13_15680 PF00512 His Kinase A (phospho-acceptor) domain MID13_15680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_15680 PF02743 Cache domain MID13_15685 PF01243 Pyridoxamine 5'-phosphate oxidase MID13_15685 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MID13_15690 PF00072 Response regulator receiver domain MID13_15690 PF00196 Bacterial regulatory proteins, luxR family MID13_15695 PF03781 Sulfatase-modifying factor enzyme 1 MID13_15705 PF12833 Helix-turn-helix domain MID13_15710 PF01619 Proline dehydrogenase MID13_15710 PF14850 DNA-binding domain of Proline dehydrogenase MID13_15710 PF18327 Proline utilization A proline dehydrogenase N-terminal domain MID13_15710 PF00171 Aldehyde dehydrogenase family MID13_15720 PF00474 Sodium:solute symporter family MID13_15725 PF13411 MerR HTH family regulatory protein MID13_15740 PF01037 Lrp/AsnC ligand binding domain MID13_15750 PF00005 ABC transporter MID13_15750 PF00664 ABC transporter transmembrane region MID13_15775 PF08019 Phosphoethanolamine transferase EptA/EptB MID13_15775 PF00884 Sulfatase MID13_15790 PF03668 P-loop ATPase protein family MID13_15795 PF02685 Glucokinase MID13_15795 PF01418 Helix-turn-helix domain, rpiR family MID13_15795 PF01380 SIS domain MID13_15805 PF07969 Amidohydrolase family MID13_15815 PF00474 Sodium:solute symporter family MID13_15820 PF00294 pfkB family carbohydrate kinase MID13_15825 PF01081 KDPG and KHG aldolase MID13_15840 PF02743 Cache domain MID13_15840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_15840 PF00512 His Kinase A (phospho-acceptor) domain MID13_15845 PF00158 Sigma-54 interaction domain MID13_15845 PF02954 Bacterial regulatory protein, Fis family MID13_15845 PF00072 Response regulator receiver domain MID13_15860 PF01266 FAD dependent oxidoreductase MID13_15865 PF04389 Peptidase family M28 MID13_15865 PF04151 Bacterial pre-peptidase C-terminal domain MID13_15870 PF04151 Bacterial pre-peptidase C-terminal domain MID13_15870 PF01447 Thermolysin metallopeptidase, catalytic domain MID13_15870 PF02868 Thermolysin metallopeptidase, alpha-helical domain MID13_15870 PF07504 Fungalysin/Thermolysin Propeptide Motif MID13_15870 PF03413 Peptidase propeptide and YPEB domain MID13_15880 PF00512 His Kinase A (phospho-acceptor) domain MID13_15880 PF00672 HAMP domain MID13_15880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_15885 PF00072 Response regulator receiver domain MID13_15885 PF00486 Transcriptional regulatory protein, C terminal MID13_15895 PF00291 Pyridoxal-phosphate dependent enzyme MID13_15900 PF01037 Lrp/AsnC ligand binding domain MID13_15910 PF07687 Peptidase dimerisation domain MID13_15910 PF01546 Peptidase family M20/M25/M40 MID13_15915 PF03480 Bacterial extracellular solute-binding protein, family 7 MID13_15925 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID13_15930 PF01321 Creatinase/Prolidase N-terminal domain MID13_15930 PF00557 Metallopeptidase family M24 MID13_15945 PF13977 BetI-type transcriptional repressor, C-terminal MID13_15945 PF00440 Bacterial regulatory proteins, tetR family MID13_15950 PF00171 Aldehyde dehydrogenase family MID13_15955 PF05199 GMC oxidoreductase MID13_15955 PF00732 GMC oxidoreductase MID13_15960 PF04069 Substrate binding domain of ABC-type glycine betaine transport system MID13_15965 PF00528 Binding-protein-dependent transport system inner membrane component MID13_15970 PF00005 ABC transporter MID13_15970 PF00571 CBS domain MID13_15975 PF01047 MarR family MID13_15980 PF00171 Aldehyde dehydrogenase family MID13_15990 PF00465 Iron-containing alcohol dehydrogenase MID13_16000 PF00884 Sulfatase MID13_16005 PF04055 Radical SAM superfamily MID13_16005 PF13186 Iron-sulfur cluster-binding domain MID13_16010 PF16925 Tetracyclin repressor-like, C-terminal domain MID13_16010 PF00440 Bacterial regulatory proteins, tetR family MID13_16015 PF13599 Pentapeptide repeats (9 copies) MID13_16020 PF13673 Acetyltransferase (GNAT) domain MID13_16045 PF02056 Family 4 glycosyl hydrolase MID13_16045 PF11975 Family 4 glycosyl hydrolase C-terminal domain MID13_16050 PF12833 Helix-turn-helix domain MID13_16055 PF01204 Trehalase MID13_16070 PF17853 GGDEF-like domain MID13_16070 PF12833 Helix-turn-helix domain MID13_16090 PF14602 Hexapeptide repeat of succinyl-transferase MID13_16090 PF12464 Maltose acetyltransferase MID13_16095 PF00962 Adenosine/AMP deaminase MID13_16100 PF03466 LysR substrate binding domain MID13_16100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_16105 PF04262 Glutamate-cysteine ligase MID13_16110 PF00664 ABC transporter transmembrane region MID13_16110 PF00005 ABC transporter MID13_16115 PF00664 ABC transporter transmembrane region MID13_16115 PF00005 ABC transporter MID13_16125 PF02311 AraC-like ligand binding domain MID13_16125 PF12833 Helix-turn-helix domain MID13_16130 PF07690 Major Facilitator Superfamily MID13_16140 PF16197 Ketoacyl-synthetase C-terminal extension MID13_16140 PF00109 Beta-ketoacyl synthase, N-terminal domain MID13_16140 PF02801 Beta-ketoacyl synthase, C-terminal domain MID13_16140 PF08659 KR domain MID13_16140 PF00698 Acyl transferase domain MID13_16140 PF00550 Phosphopantetheine attachment site MID13_16140 PF14765 Polyketide synthase dehydratase MID13_16140 PF08240 Alcohol dehydrogenase GroES-like domain MID13_16165 PF02219 Methylenetetrahydrofolate reductase MID13_16165 PF02574 Homocysteine S-methyltransferase MID13_16190 PF00106 short chain dehydrogenase MID13_16250 PF03466 LysR substrate binding domain MID13_16250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_16260 PF03606 C4-dicarboxylate anaerobic carrier MID13_16270 PF14864 Alkyl sulfatase C-terminal MID13_16270 PF14863 Alkyl sulfatase dimerisation MID13_16270 PF00753 Metallo-beta-lactamase superfamily MID13_16275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_16275 PF03466 LysR substrate binding domain MID13_16285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID13_16295 PF00563 EAL domain MID13_16295 PF00990 Diguanylate cyclase, GGDEF domain MID13_16295 PF03707 Bacterial signalling protein N terminal repeat MID13_16310 PF00232 Glycosyl hydrolase family 1 MID13_16315 PF00356 Bacterial regulatory proteins, lacI family MID13_16320 PF14602 Hexapeptide repeat of succinyl-transferase MID13_16320 PF12464 Maltose acetyltransferase MID13_16325 PF08240 Alcohol dehydrogenase GroES-like domain MID13_16325 PF00107 Zinc-binding dehydrogenase MID13_16330 PF00375 Sodium:dicarboxylate symporter family MID13_16345 PF01872 RibD C-terminal domain MID13_16355 PF13091 PLD-like domain MID13_16360 PF00881 Nitroreductase family MID13_16365 PF00440 Bacterial regulatory proteins, tetR family MID13_16370 PF00696 Amino acid kinase family MID13_16375 PF13520 Amino acid permease MID13_16380 PF04371 Porphyromonas-type peptidyl-arginine deiminase MID13_16385 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MID13_16385 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MID13_16390 PF01042 Endoribonuclease L-PSP MID13_16395 PF01177 Asp/Glu/Hydantoin racemase MID13_16400 PF00455 DeoR C terminal sensor domain MID13_16400 PF08220 DeoR-like helix-turn-helix domain MID13_16415 PF00465 Iron-containing alcohol dehydrogenase MID13_16420 PF13419 Haloacid dehalogenase-like hydrolase MID13_16425 PF00923 Transaldolase/Fructose-6-phosphate aldolase MID13_16430 PF00456 Transketolase, thiamine diphosphate binding domain MID13_16430 PF02779 Transketolase, pyrimidine binding domain MID13_16430 PF02780 Transketolase, C-terminal domain MID13_16435 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MID13_16440 PF01546 Peptidase family M20/M25/M40 MID13_16445 PF00367 phosphotransferase system, EIIB MID13_16445 PF02378 Phosphotransferase system, EIIC MID13_16460 PF01266 FAD dependent oxidoreductase MID13_16460 PF16901 C-terminal domain of alpha-glycerophosphate oxidase MID13_16465 PF08220 DeoR-like helix-turn-helix domain MID13_16465 PF00455 DeoR C terminal sensor domain MID13_16470 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MID13_16470 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MID13_16475 PF00230 Major intrinsic protein MID13_16485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_16485 PF03466 LysR substrate binding domain MID13_16490 PF01758 Sodium Bile acid symporter family MID13_16510 PF01435 Peptidase family M48 MID13_16510 PF13181 Tetratricopeptide repeat MID13_16545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_16545 PF03466 LysR substrate binding domain MID13_16555 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MID13_16555 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MID13_16580 PF08220 DeoR-like helix-turn-helix domain MID13_16580 PF00455 DeoR C terminal sensor domain MID13_16585 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID13_16585 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MID13_16590 PF07005 Sugar-binding N-terminal domain MID13_16590 PF17042 Nucleotide-binding C-terminal domain MID13_16595 PF00596 Class II Aldolase and Adducin N-terminal domain MID13_16600 PF01261 Xylose isomerase-like TIM barrel MID13_16605 PF02447 GntP family permease MID13_16610 PF02595 Glycerate kinase family MID13_16615 PF06628 Catalase-related immune-responsive MID13_16615 PF00199 Catalase MID13_16620 PF01734 Patatin-like phospholipase MID13_16625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MID13_16625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID13_16635 PF00970 Oxidoreductase FAD-binding domain MID13_16635 PF00175 Oxidoreductase NAD-binding domain MID13_16640 PF01553 Acyltransferase MID13_16655 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MID13_16655 PF00128 Alpha amylase, catalytic domain MID13_16660 PF02264 LamB porin MID13_16670 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MID13_16670 PF11852 Domain of unknown function (DUF3372) MID13_16670 PF03714 Bacterial pullanase-associated domain MID13_16670 PF18494 Pullulanase Ins domain MID13_16670 PF17967 Pullulanase N2 domain MID13_16680 PF01810 LysE type translocator MID13_16685 PF01037 Lrp/AsnC ligand binding domain MID13_16690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_16690 PF03466 LysR substrate binding domain MID13_16695 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID13_16700 PF00034 Cytochrome c MID13_16705 PF01568 Molydopterin dinucleotide binding domain MID13_16705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MID13_16705 PF00384 Molybdopterin oxidoreductase MID13_16710 PF03916 Polysulphide reductase, NrfD MID13_16715 PF13247 4Fe-4S dicluster domain MID13_16720 PF00512 His Kinase A (phospho-acceptor) domain MID13_16720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_16725 PF00072 Response regulator receiver domain MID13_16725 PF00196 Bacterial regulatory proteins, luxR family MID13_16735 PF00375 Sodium:dicarboxylate symporter family MID13_16740 PF03193 RsgA GTPase MID13_16750 PF02630 SCO1/SenC MID13_16765 PF00196 Bacterial regulatory proteins, luxR family MID13_16765 PF17874 MalT-like TPR region MID13_16770 PF00343 Carbohydrate phosphorylase MID13_16775 PF02446 4-alpha-glucanotransferase MID13_16780 PF02806 Alpha amylase, C-terminal all-beta domain MID13_16780 PF00128 Alpha amylase, catalytic domain MID13_16780 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MID13_16795 PF12558 ATP-binding cassette cobalt transporter MID13_16795 PF00005 ABC transporter MID13_16800 PF07155 ECF-type riboflavin transporter, S component MID13_16805 PF00529 HlyD membrane-fusion protein of T1SS MID13_16805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID13_16810 PF11742 Protein of unknown function (DUF3302) MID13_16820 PF00990 Diguanylate cyclase, GGDEF domain MID13_16835 PF01048 Phosphorylase superfamily MID13_16840 PF17969 L,D-transpeptidase C-terminal domain MID13_16840 PF01476 LysM domain MID13_16840 PF03734 L,D-transpeptidase catalytic domain MID13_16850 PF00270 DEAD/DEAH box helicase MID13_16850 PF00271 Helicase conserved C-terminal domain MID13_16855 PF00657 GDSL-like Lipase/Acylhydrolase MID13_16860 PF00561 alpha/beta hydrolase fold MID13_16865 PF03280 Proteobacterial lipase chaperone protein MID13_16870 PF00326 Prolyl oligopeptidase family MID13_16870 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain MID13_16875 PF07715 TonB-dependent Receptor Plug Domain MID13_16875 PF00593 TonB dependent receptor MID13_16880 PF01483 Proprotein convertase P-domain MID13_16880 PF00082 Subtilase family MID13_16895 PF17200 Single Cache domain 2 MID13_16895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_16895 PF00672 HAMP domain MID13_16900 PF12849 PBP superfamily domain MID13_16905 PF00528 Binding-protein-dependent transport system inner membrane component MID13_16910 PF00528 Binding-protein-dependent transport system inner membrane component MID13_16915 PF00005 ABC transporter MID13_16920 PF00990 Diguanylate cyclase, GGDEF domain MID13_16920 PF17151 Periplasmic sensor domain MID13_16930 PF00092 von Willebrand factor type A domain MID13_16930 PF07584 Aerotolerance regulator N-terminal MID13_16935 PF07584 Aerotolerance regulator N-terminal MID13_16935 PF00092 von Willebrand factor type A domain MID13_16945 PF01882 Protein of unknown function DUF58 MID13_16950 PF07726 ATPase family associated with various cellular activities (AAA) MID13_16950 PF17863 AAA lid domain MID13_16955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_16955 PF00672 HAMP domain MID13_16955 PF02743 Cache domain MID13_16965 PF00005 ABC transporter MID13_16965 PF08402 TOBE domain MID13_16970 PF01547 Bacterial extracellular solute-binding protein MID13_16975 PF14785 Maltose transport system permease protein MalF P2 domain MID13_16975 PF00528 Binding-protein-dependent transport system inner membrane component MID13_16980 PF00528 Binding-protein-dependent transport system inner membrane component MID13_16995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID13_17020 PF02687 FtsX-like permease family MID13_17020 PF12704 MacB-like periplasmic core domain MID13_17025 PF00005 ABC transporter MID13_17030 PF04231 Endonuclease I MID13_17045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID13_17045 PF00529 HlyD membrane-fusion protein of T1SS MID13_17050 PF11742 Protein of unknown function (DUF3302) MID13_17080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_17080 PF00072 Response regulator receiver domain MID13_17085 PF17327 Acyl homoserine lactone synthase MID13_17100 PF00463 Isocitrate lyase family MID13_17105 PF03466 LysR substrate binding domain MID13_17105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_17110 PF01274 Malate synthase MID13_17115 PF00171 Aldehyde dehydrogenase family MID13_17120 PF01614 Bacterial transcriptional regulator MID13_17120 PF09339 IclR helix-turn-helix domain MID13_17125 PF01515 Phosphate acetyl/butaryl transferase MID13_17130 PF01925 Sulfite exporter TauE/SafE MID13_17135 PF11775 Cobalamin biosynthesis protein CobT VWA domain MID13_17135 PF06213 Cobalamin biosynthesis protein CobT MID13_17140 PF12556 Cobaltochelatase CobS subunit N terminal MID13_17140 PF07728 AAA domain (dynein-related subfamily) MID13_17140 PF08406 CbbQ/NirQ/NorQ C-terminal MID13_17145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID13_17145 PF00205 Thiamine pyrophosphate enzyme, central domain MID13_17145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID13_17160 PF01266 FAD dependent oxidoreductase MID13_17165 PF03480 Bacterial extracellular solute-binding protein, family 7 MID13_17170 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MID13_17175 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID13_17175 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MID13_17190 PF02028 BCCT, betaine/carnitine/choline family transporter MID13_17200 PF05661 Protein of unknown function (DUF808) MID13_17205 PF01979 Amidohydrolase family MID13_17215 PF03476 MOSC N-terminal beta barrel domain MID13_17215 PF00111 2Fe-2S iron-sulfur cluster binding domain MID13_17215 PF03473 MOSC domain MID13_17220 PF02540 NAD synthase MID13_17265 PF00005 ABC transporter MID13_17270 PF01032 FecCD transport family MID13_17280 PF02472 Biopolymer transport protein ExbD/TolR MID13_17285 PF01618 MotA/TolQ/ExbB proton channel family MID13_17290 PF03544 Gram-negative bacterial TonB protein C-terminal MID13_17295 PF04055 Radical SAM superfamily MID13_17300 PF06228 Haem utilisation ChuX/HutX MID13_17305 PF01243 Pyridoxamine 5'-phosphate oxidase MID13_17310 PF01923 Cobalamin adenosyltransferase MID13_17315 PF01584 CheW-like domain MID13_17315 PF00072 Response regulator receiver domain MID13_17325 PF00128 Alpha amylase, catalytic domain MID13_17330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_17330 PF00672 HAMP domain MID13_17330 PF02743 Cache domain MID13_17335 PF07670 Nucleoside recognition MID13_17360 PF08525 Opacity-associated protein A N-terminal motif MID13_17360 PF01476 LysM domain MID13_17360 PF01551 Peptidase family M23 MID13_17365 PF08447 PAS fold MID13_17365 PF00563 EAL domain MID13_17365 PF00990 Diguanylate cyclase, GGDEF domain MID13_17365 PF08448 PAS fold MID13_17370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_17370 PF03466 LysR substrate binding domain MID13_17375 PF07690 Major Facilitator Superfamily MID13_17385 PF00462 Glutaredoxin MID13_17390 PF00892 EamA-like transporter family MID13_17395 PF13609 Gram-negative porin MID13_17410 PF00085 Thioredoxin MID13_17415 PF11412 Disulphide bond corrector protein DsbC MID13_17415 PF02683 Cytochrome C biogenesis protein transmembrane region MID13_17425 PF00924 Mechanosensitive ion channel MID13_17425 PF05552 Conserved TM helix MID13_17435 PF00072 Response regulator receiver domain MID13_17435 PF00196 Bacterial regulatory proteins, luxR family MID13_17470 PF00248 Aldo/keto reductase family MID13_17480 PF00270 DEAD/DEAH box helicase MID13_17480 PF03880 DbpA RNA binding domain MID13_17480 PF00271 Helicase conserved C-terminal domain MID13_17495 PF07733 Bacterial DNA polymerase III alpha NTPase domain MID13_17495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MID13_17495 PF02811 PHP domain MID13_17495 PF00929 Exonuclease MID13_17495 PF11490 DNA polymerase III polC-type N-terminus II MID13_17495 PF14579 Helix-hairpin-helix motif MID13_17505 PF00270 DEAD/DEAH box helicase MID13_17505 PF00271 Helicase conserved C-terminal domain MID13_17510 PF00881 Nitroreductase family MID13_17530 PF11953 Domain of unknown function (DUF3470) MID13_17530 PF00037 4Fe-4S binding domain MID13_17535 PF08032 RNA 2'-O ribose methyltransferase substrate binding MID13_17535 PF00588 SpoU rRNA Methylase family MID13_17540 PF00248 Aldo/keto reductase family MID13_17550 PF01546 Peptidase family M20/M25/M40 MID13_17550 PF07687 Peptidase dimerisation domain MID13_17565 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MID13_17570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID13_17580 PF01575 MaoC like domain MID13_17585 PF12849 PBP superfamily domain MID13_17595 PF12833 Helix-turn-helix domain MID13_17600 PF08206 Ribonuclease B OB domain MID13_17600 PF17876 Cold shock domain MID13_17600 PF00575 S1 RNA binding domain MID13_17600 PF00773 RNB domain MID13_17605 PF00271 Helicase conserved C-terminal domain MID13_17605 PF00270 DEAD/DEAH box helicase MID13_17605 PF03880 DbpA RNA binding domain MID13_17610 PF00871 Acetokinase family MID13_17620 PF00291 Pyridoxal-phosphate dependent enzyme MID13_17620 PF00571 CBS domain MID13_17625 PF01381 Helix-turn-helix MID13_17625 PF07883 Cupin domain MID13_17630 PF03594 Benzoate membrane transport protein MID13_17645 PF00107 Zinc-binding dehydrogenase MID13_17645 PF08240 Alcohol dehydrogenase GroES-like domain MID13_17650 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MID13_17650 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MID13_17655 PF04183 IucA / IucC family MID13_17655 PF06276 Ferric iron reductase FhuF-like transporter MID13_17665 PF04183 IucA / IucC family MID13_17665 PF06276 Ferric iron reductase FhuF-like transporter MID13_17670 PF00206 Lyase MID13_17670 PF02655 ATP-grasp domain MID13_17675 PF07715 TonB-dependent Receptor Plug Domain MID13_17675 PF00593 TonB dependent receptor MID13_17680 PF07660 Secretin and TonB N terminus short domain MID13_17680 PF00593 TonB dependent receptor MID13_17680 PF07715 TonB-dependent Receptor Plug Domain MID13_17685 PF01497 Periplasmic binding protein MID13_17690 PF01032 FecCD transport family MID13_17695 PF01032 FecCD transport family MID13_17700 PF00005 ABC transporter MID13_17710 PF00892 EamA-like transporter family MID13_17715 PF00128 Alpha amylase, catalytic domain MID13_17720 PF01494 FAD binding domain MID13_17725 PF03466 LysR substrate binding domain MID13_17725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_17730 PF01554 MatE MID13_17765 PF00478 IMP dehydrogenase / GMP reductase domain MID13_17775 PF01979 Amidohydrolase family MID13_17780 PF13417 Glutathione S-transferase, N-terminal domain MID13_17780 PF00043 Glutathione S-transferase, C-terminal domain MID13_17810 PF00892 EamA-like transporter family MID13_17815 PF08543 Phosphomethylpyrimidine kinase MID13_17820 PF00005 ABC transporter MID13_17825 PF00528 Binding-protein-dependent transport system inner membrane component MID13_17830 PF09084 NMT1/THI5 like MID13_17835 PF03070 TENA/THI-4/PQQC family MID13_17840 PF02110 Hydroxyethylthiazole kinase family MID13_17845 PF02743 Cache domain MID13_17845 PF00672 HAMP domain MID13_17845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_17850 PF02581 Thiamine monophosphate synthase MID13_17860 PF03466 LysR substrate binding domain MID13_17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_17870 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term MID13_17870 PF12833 Helix-turn-helix domain MID13_17890 PF00990 Diguanylate cyclase, GGDEF domain MID13_17890 PF07694 5TMR of 5TMR-LYT MID13_17900 PF13533 Biotin-lipoyl like MID13_17910 PF01594 AI-2E family transporter MID13_17935 PF01497 Periplasmic binding protein MID13_17940 PF01032 FecCD transport family MID13_17945 PF01032 FecCD transport family MID13_17950 PF00005 ABC transporter MID13_17955 PF00072 Response regulator receiver domain MID13_17960 PF00512 His Kinase A (phospho-acceptor) domain MID13_17960 PF00672 HAMP domain MID13_17960 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MID13_17960 PF00072 Response regulator receiver domain MID13_17960 PF01627 Hpt domain MID13_17960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_17965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_17965 PF03466 LysR substrate binding domain MID13_17970 PF07690 Major Facilitator Superfamily MID13_17975 PF02142 MGS-like domain MID13_17980 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family MID13_17985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_17985 PF00672 HAMP domain MID13_17985 PF17149 Periplasmic sensor domain found in signal transduction proteins MID13_17985 PF00512 His Kinase A (phospho-acceptor) domain MID13_17985 PF01627 Hpt domain MID13_17985 PF00072 Response regulator receiver domain MID13_17995 PF18081 Fanconi anemia-associated nuclease SAP domain MID13_17995 PF08774 VRR-NUC domain MID13_18010 PF01844 HNH endonuclease MID13_18015 PF02798 Glutathione S-transferase, N-terminal domain MID13_18020 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_18055 PF00486 Transcriptional regulatory protein, C terminal MID13_18055 PF00072 Response regulator receiver domain MID13_18060 PF04116 Fatty acid hydroxylase superfamily MID13_18080 PF00873 AcrB/AcrD/AcrF family MID13_18090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MID13_18090 PF02378 Phosphotransferase system, EIIC MID13_18095 PF00294 pfkB family carbohydrate kinase MID13_18100 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MID13_18100 PF00381 PTS HPr component phosphorylation site MID13_18105 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family MID13_18105 PF00356 Bacterial regulatory proteins, lacI family MID13_18110 PF03793 PASTA domain MID13_18110 PF00069 Protein kinase domain MID13_18115 PF07690 Major Facilitator Superfamily MID13_18125 PF04324 BFD-like [2Fe-2S] binding domain MID13_18125 PF18267 Rubredoxin NAD+ reductase C-terminal domain MID13_18125 PF13806 Rieske-like [2Fe-2S] domain MID13_18125 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_18125 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MID13_18125 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MID13_18130 PF01568 Molydopterin dinucleotide binding domain MID13_18130 PF00384 Molybdopterin oxidoreductase MID13_18130 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MID13_18160 PF01548 Transposase MID13_18160 PF02371 Transposase IS116/IS110/IS902 family MID13_18180 PF02371 Transposase IS116/IS110/IS902 family MID13_18180 PF01548 Transposase MID13_18240 PF03466 LysR substrate binding domain MID13_18240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_18245 PF00563 EAL domain MID13_18245 PF00990 Diguanylate cyclase, GGDEF domain MID13_18245 PF03707 Bacterial signalling protein N terminal repeat MID13_18265 PF00356 Bacterial regulatory proteins, lacI family MID13_18270 PF00294 pfkB family carbohydrate kinase MID13_18275 PF13407 Periplasmic binding protein domain MID13_18280 PF02653 Branched-chain amino acid transport system / permease component MID13_18285 PF00005 ABC transporter MID13_18290 PF05025 RbsD / FucU transport protein family MID13_18315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID13_18320 PF00528 Binding-protein-dependent transport system inner membrane component MID13_18325 PF12911 N-terminal TM domain of oligopeptide transport permease C MID13_18325 PF00528 Binding-protein-dependent transport system inner membrane component MID13_18330 PF00005 ABC transporter MID13_18330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_18335 PF00528 Binding-protein-dependent transport system inner membrane component MID13_18340 PF00528 Binding-protein-dependent transport system inner membrane component MID13_18340 PF12911 N-terminal TM domain of oligopeptide transport permease C MID13_18345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID13_18350 PF00005 ABC transporter MID13_18350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_18355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_18355 PF00005 ABC transporter MID13_18370 PF00072 Response regulator receiver domain MID13_18370 PF00486 Transcriptional regulatory protein, C terminal MID13_18375 PF00672 HAMP domain MID13_18375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_18375 PF00512 His Kinase A (phospho-acceptor) domain MID13_18375 PF13755 Sensor N-terminal transmembrane domain MID13_18375 PF13756 Stimulus-sensing domain MID13_18385 PF00474 Sodium:solute symporter family MID13_18410 PF03480 Bacterial extracellular solute-binding protein, family 7 MID13_18415 PF00356 Bacterial regulatory proteins, lacI family MID13_18420 PF03328 HpcH/HpaI aldolase/citrate lyase family MID13_18425 PF00815 Histidinol dehydrogenase MID13_18440 PF00561 alpha/beta hydrolase fold MID13_18445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_18445 PF03466 LysR substrate binding domain MID13_18455 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain MID13_18455 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MID13_18460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MID13_18460 PF02874 ATP synthase alpha/beta family, beta-barrel domain MID13_18465 PF00231 ATP synthase MID13_18470 PF02874 ATP synthase alpha/beta family, beta-barrel domain MID13_18470 PF00306 ATP synthase alpha/beta chain, C terminal domain MID13_18470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MID13_18475 PF00213 ATP synthase delta (OSCP) subunit MID13_18480 PF00430 ATP synthase B/B' CF(0) MID13_18485 PF00137 ATP synthase subunit C MID13_18490 PF00119 ATP synthase A chain MID13_18500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_18500 PF03466 LysR substrate binding domain MID13_18510 PF00171 Aldehyde dehydrogenase family MID13_18520 PF02028 BCCT, betaine/carnitine/choline family transporter MID13_18535 PF00561 alpha/beta hydrolase fold MID13_18550 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID13_18550 PF00034 Cytochrome c MID13_18560 PF00115 Cytochrome C and Quinol oxidase polypeptide I MID13_18580 PF03707 Bacterial signalling protein N terminal repeat MID13_18580 PF00990 Diguanylate cyclase, GGDEF domain MID13_18580 PF00563 EAL domain MID13_18590 PF01810 LysE type translocator MID13_18595 PF02567 Phenazine biosynthesis-like protein MID13_18630 PF02469 Fasciclin domain MID13_18640 PF00583 Acetyltransferase (GNAT) family MID13_18650 PF13488 Glycine zipper MID13_18650 PF00691 OmpA family MID13_18655 PF03466 LysR substrate binding domain MID13_18655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_18670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID13_18670 PF00529 HlyD membrane-fusion protein of T1SS MID13_18680 PF00209 Sodium:neurotransmitter symporter family MID13_18685 PF00106 short chain dehydrogenase MID13_18690 PF00072 Response regulator receiver domain MID13_18690 PF00196 Bacterial regulatory proteins, luxR family MID13_18695 PF16385 Domain of unknown function MID13_18695 PF00884 Sulfatase MID13_18700 PF13186 Iron-sulfur cluster-binding domain MID13_18700 PF04055 Radical SAM superfamily MID13_18715 PF17863 AAA lid domain MID13_18715 PF07726 ATPase family associated with various cellular activities (AAA) MID13_18755 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) MID13_18760 PF00072 Response regulator receiver domain MID13_18760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_18760 PF09308 LuxQ, periplasmic MID13_18760 PF00512 His Kinase A (phospho-acceptor) domain MID13_18765 PF03150 Di-haem cytochrome c peroxidase MID13_18765 PF00034 Cytochrome c MID13_18770 PF00884 Sulfatase MID13_18775 PF00884 Sulfatase MID13_18785 PF07726 ATPase family associated with various cellular activities (AAA) MID13_18785 PF17863 AAA lid domain MID13_18800 PF00092 von Willebrand factor type A domain MID13_18815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_18815 PF03466 LysR substrate binding domain MID13_18820 PF03707 Bacterial signalling protein N terminal repeat MID13_18820 PF00990 Diguanylate cyclase, GGDEF domain MID13_18820 PF00563 EAL domain MID13_18830 PF13407 Periplasmic binding protein domain MID13_18840 PF03781 Sulfatase-modifying factor enzyme 1 MID13_18845 PF04055 Radical SAM superfamily MID13_18845 PF13186 Iron-sulfur cluster-binding domain MID13_18860 PF00672 HAMP domain MID13_18860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_18860 PF12729 Four helix bundle sensory module for signal transduction MID13_18885 PF01627 Hpt domain MID13_18885 PF00512 His Kinase A (phospho-acceptor) domain MID13_18885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_18885 PF00072 Response regulator receiver domain MID13_18885 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MID13_18885 PF00672 HAMP domain MID13_18900 PF00005 ABC transporter MID13_18900 PF00664 ABC transporter transmembrane region MID13_18905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID13_18905 PF00529 HlyD membrane-fusion protein of T1SS MID13_18930 PF00072 Response regulator receiver domain MID13_18930 PF00486 Transcriptional regulatory protein, C terminal MID13_18935 PF01740 STAS domain MID13_18940 PF00483 Nucleotidyl transferase MID13_18975 PF00722 Glycosyl hydrolases family 16 MID13_18995 PF07690 Major Facilitator Superfamily MID13_19000 PF13533 Biotin-lipoyl like MID13_19005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_19005 PF03466 LysR substrate binding domain MID13_19020 PF00072 Response regulator receiver domain MID13_19020 PF00486 Transcriptional regulatory protein, C terminal MID13_19025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_19025 PF00672 HAMP domain MID13_19025 PF00989 PAS fold MID13_19025 PF00512 His Kinase A (phospho-acceptor) domain MID13_19030 PF01161 Phosphatidylethanolamine-binding protein MID13_19040 PF07690 Major Facilitator Superfamily MID13_19045 PF03466 LysR substrate binding domain MID13_19045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_19050 PF00291 Pyridoxal-phosphate dependent enzyme MID13_19060 PF00579 tRNA synthetases class I (W and Y) MID13_19065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID13_19080 PF01810 LysE type translocator MID13_19085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_19085 PF00672 HAMP domain MID13_19085 PF02743 Cache domain MID13_19095 PF01554 MatE MID13_19120 PF02347 Glycine cleavage system P-protein MID13_19125 PF01597 Glycine cleavage H-protein MID13_19130 PF00464 Serine hydroxymethyltransferase MID13_19140 PF08669 Glycine cleavage T-protein C-terminal barrel domain MID13_19140 PF01571 Aminomethyltransferase folate-binding domain MID13_19160 PF00472 RF-1 domain MID13_19165 PF13419 Haloacid dehalogenase-like hydrolase MID13_19170 PF17158 Membrane-associated sensor, integral membrane domain MID13_19170 PF00990 Diguanylate cyclase, GGDEF domain MID13_19180 PF00294 pfkB family carbohydrate kinase MID13_19195 PF11849 Domain of unknown function (DUF3369) MID13_19200 PF13419 Haloacid dehalogenase-like hydrolase MID13_19205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID13_19210 PF00873 AcrB/AcrD/AcrF family MID13_19215 PF00672 HAMP domain MID13_19215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_19220 PF03222 Tryptophan/tyrosine permease family MID13_19225 PF04336 Acyl carrier protein phosphodiesterase MID13_19230 PF00271 Helicase conserved C-terminal domain MID13_19230 PF00270 DEAD/DEAH box helicase MID13_19240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID13_19240 PF00529 HlyD membrane-fusion protein of T1SS MID13_19250 PF00873 AcrB/AcrD/AcrF family MID13_19255 PF00563 EAL domain MID13_19255 PF12792 CSS motif domain associated with EAL MID13_19270 PF01292 Prokaryotic cytochrome b561 MID13_19275 PF04264 YceI-like domain MID13_19280 PF01226 Formate/nitrite transporter MID13_19285 PF03466 LysR substrate binding domain MID13_19285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_19290 PF06496 Protein of unknown function (DUF1097) MID13_19295 PF11398 Protein of unknown function (DUF2813) MID13_19300 PF00149 Calcineurin-like phosphoesterase MID13_19300 PF02872 5'-nucleotidase, C-terminal domain MID13_19305 PF03741 Integral membrane protein TerC family MID13_19320 PF00270 DEAD/DEAH box helicase MID13_19320 PF00271 Helicase conserved C-terminal domain MID13_19330 PF12262 Bacterial virulence factor lipase N-terminal MID13_19335 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) MID13_19345 PF01435 Peptidase family M48 MID13_19350 PF03061 Thioesterase superfamily MID13_19360 PF12793 Sugar transport-related sRNA regulator N-term MID13_19360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID13_19365 PF00892 EamA-like transporter family MID13_19385 PF01556 DnaJ C terminal domain MID13_19385 PF00226 DnaJ domain MID13_19385 PF00684 DnaJ central domain MID13_19390 PF00905 Penicillin binding protein transpeptidase domain MID13_19390 PF03717 Penicillin-binding Protein dimerisation domain MID13_19400 PF00990 Diguanylate cyclase, GGDEF domain MID13_19400 PF00498 FHA domain MID13_19400 PF00563 EAL domain MID13_19405 PF12241 Trans-2-enoyl-CoA reductase catalytic region MID13_19405 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase MID13_19405 PF07055 Enoyl reductase FAD binding domain MID13_19410 PF13472 GDSL-like Lipase/Acylhydrolase family MID13_19415 PF00005 ABC transporter MID13_19430 PF02626 Carboxyltransferase domain, subdomain A and B MID13_19435 PF02682 Carboxyltransferase domain, subdomain C and D MID13_19440 PF03746 LamB/YcsF family MID13_19445 PF00593 TonB dependent receptor MID13_19445 PF07715 TonB-dependent Receptor Plug Domain MID13_19455 PF00563 EAL domain MID13_19455 PF03707 Bacterial signalling protein N terminal repeat MID13_19455 PF13188 PAS domain MID13_19455 PF00990 Diguanylate cyclase, GGDEF domain MID13_19460 PF16363 GDP-mannose 4,6 dehydratase MID13_19470 PF04886 PT repeat MID13_19470 PF07715 TonB-dependent Receptor Plug Domain MID13_19470 PF00593 TonB dependent receptor MID13_19475 PF03466 LysR substrate binding domain MID13_19475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_19480 PF13607 Succinyl-CoA ligase like flavodoxin domain MID13_19480 PF13380 CoA binding domain MID13_19480 PF00583 Acetyltransferase (GNAT) family MID13_19485 PF05036 Sporulation related domain MID13_19490 PF01820 D-ala D-ala ligase N-terminus MID13_19490 PF07478 D-ala D-ala ligase C-terminus MID13_19505 PF01253 Translation initiation factor SUI1 MID13_19515 PF03701 Uncharacterised protein family (UPF0181) MID13_19530 PF00072 Response regulator receiver domain MID13_19530 PF00486 Transcriptional regulatory protein, C terminal MID13_19540 PF02233 NAD(P) transhydrogenase beta subunit MID13_19545 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch MID13_19545 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MID13_19545 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MID13_19560 PF17158 Membrane-associated sensor, integral membrane domain MID13_19560 PF00990 Diguanylate cyclase, GGDEF domain MID13_19570 PF01590 GAF domain MID13_19570 PF00360 Phytochrome region MID13_19570 PF00990 Diguanylate cyclase, GGDEF domain MID13_19570 PF00563 EAL domain MID13_19580 PF00005 ABC transporter MID13_19580 PF03459 TOBE domain MID13_19585 PF00528 Binding-protein-dependent transport system inner membrane component MID13_19595 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MID13_19595 PF07685 CobB/CobQ-like glutamine amidotransferase domain MID13_19610 PF00672 HAMP domain MID13_19610 PF02743 Cache domain MID13_19610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_19615 PF00005 ABC transporter MID13_19615 PF12848 ABC transporter MID13_19620 PF18030 RimK PreATP-grasp domain MID13_19620 PF08443 RimK-like ATP-grasp domain MID13_19625 PF00155 Aminotransferase class I and II MID13_19635 PF01554 MatE MID13_19645 PF13597 Anaerobic ribonucleoside-triphosphate reductase MID13_19645 PF03477 ATP cone domain MID13_19660 PF04143 Sulphur transport MID13_19675 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MID13_19675 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MID13_19680 PF00085 Thioredoxin MID13_19685 PF05199 GMC oxidoreductase MID13_19685 PF00732 GMC oxidoreductase MID13_19690 PF00501 AMP-binding enzyme MID13_19690 PF13193 AMP-binding enzyme C-terminal domain MID13_19695 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term MID13_19695 PF12833 Helix-turn-helix domain MID13_19700 PF07690 Major Facilitator Superfamily MID13_19720 PF01554 MatE MID13_19725 PF11756 Nitrous oxide-stimulated promoter MID13_19745 PF00950 ABC 3 transport family MID13_19750 PF00005 ABC transporter MID13_19755 PF01297 Zinc-uptake complex component A periplasmic MID13_19800 PF02472 Biopolymer transport protein ExbD/TolR MID13_19805 PF01618 MotA/TolQ/ExbB proton channel family MID13_19810 PF01618 MotA/TolQ/ExbB proton channel family MID13_19820 PF00593 TonB dependent receptor MID13_19820 PF07715 TonB-dependent Receptor Plug Domain MID13_19825 PF00375 Sodium:dicarboxylate symporter family MID13_19830 PF00512 His Kinase A (phospho-acceptor) domain MID13_19830 PF16527 Two-component sensor protein CpxA, periplasmic domain MID13_19830 PF00672 HAMP domain MID13_19830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_19835 PF00072 Response regulator receiver domain MID13_19835 PF00486 Transcriptional regulatory protein, C terminal MID13_19850 PF10414 Sirohaem synthase dimerisation region MID13_19850 PF14824 Sirohaem biosynthesis protein central MID13_19850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MID13_19855 PF01226 Formate/nitrite transporter MID13_19860 PF13806 Rieske-like [2Fe-2S] domain MID13_19865 PF18267 Rubredoxin NAD+ reductase C-terminal domain MID13_19865 PF04324 BFD-like [2Fe-2S] binding domain MID13_19865 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MID13_19865 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_19865 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MID13_19895 PF00583 Acetyltransferase (GNAT) family MID13_19895 PF08218 Citrate lyase ligase C-terminal domain MID13_19905 PF04773 FecR protein MID13_19905 PF16220 Domain of unknown function (DUF4880) MID13_19910 PF07715 TonB-dependent Receptor Plug Domain MID13_19910 PF07660 Secretin and TonB N terminus short domain MID13_19910 PF00593 TonB dependent receptor MID13_19935 PF01618 MotA/TolQ/ExbB proton channel family MID13_19940 PF02472 Biopolymer transport protein ExbD/TolR MID13_19945 PF03544 Gram-negative bacterial TonB protein C-terminal MID13_19975 PF05762 VWA domain containing CoxE-like protein MID13_19980 PF17868 AAA lid domain MID13_19980 PF12592 Protein of unknown function (DUF3763) MID13_19980 PF07728 AAA domain (dynein-related subfamily) MID13_19985 PF00293 NUDIX domain MID13_19990 PF01212 Beta-eliminating lyase MID13_19995 PF00034 Cytochrome c MID13_20010 PF00072 Response regulator receiver domain MID13_20010 PF00196 Bacterial regulatory proteins, luxR family MID13_20020 PF00990 Diguanylate cyclase, GGDEF domain MID13_20030 PF00072 Response regulator receiver domain MID13_20030 PF00196 Bacterial regulatory proteins, luxR family MID13_20035 PF00990 Diguanylate cyclase, GGDEF domain MID13_20035 PF03707 Bacterial signalling protein N terminal repeat MID13_20035 PF00563 EAL domain MID13_20040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_20040 PF00512 His Kinase A (phospho-acceptor) domain MID13_20040 PF00072 Response regulator receiver domain MID13_20040 PF09456 RcsC Alpha-Beta-Loop (ABL) MID13_20080 PF00196 Bacterial regulatory proteins, luxR family MID13_20095 PF00282 Pyridoxal-dependent decarboxylase conserved domain MID13_20100 PF12833 Helix-turn-helix domain MID13_20110 PF01926 50S ribosome-binding GTPase MID13_20115 PF00990 Diguanylate cyclase, GGDEF domain MID13_20115 PF05230 MASE2 domain MID13_20150 PF00873 AcrB/AcrD/AcrF family MID13_20155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID13_20160 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) MID13_20165 PF12262 Bacterial virulence factor lipase N-terminal MID13_20180 PF03606 C4-dicarboxylate anaerobic carrier MID13_20190 PF00072 Response regulator receiver domain MID13_20190 PF00196 Bacterial regulatory proteins, luxR family MID13_20195 PF07730 Histidine kinase MID13_20195 PF00672 HAMP domain MID13_20195 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term MID13_20195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_20210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MID13_20210 PF00384 Molybdopterin oxidoreductase MID13_20210 PF01568 Molydopterin dinucleotide binding domain MID13_20215 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) MID13_20220 PF03264 NapC/NirT cytochrome c family, N-terminal region MID13_20230 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus MID13_20230 PF00561 alpha/beta hydrolase fold MID13_20240 PF00108 Thiolase, N-terminal domain MID13_20240 PF02803 Thiolase, C-terminal domain MID13_20245 PF00106 short chain dehydrogenase MID13_20265 PF01037 Lrp/AsnC ligand binding domain MID13_20280 PF13426 PAS domain MID13_20280 PF00072 Response regulator receiver domain MID13_20280 PF00512 His Kinase A (phospho-acceptor) domain MID13_20280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_20280 PF08448 PAS fold MID13_20285 PF00072 Response regulator receiver domain MID13_20285 PF00486 Transcriptional regulatory protein, C terminal MID13_20310 PF01810 LysE type translocator MID13_20315 PF00271 Helicase conserved C-terminal domain MID13_20315 PF00270 DEAD/DEAH box helicase MID13_20325 PF02492 CobW/HypB/UreG, nucleotide-binding domain MID13_20325 PF07683 Cobalamin synthesis protein cobW C-terminal domain MID13_20330 PF00654 Voltage gated chloride channel MID13_20340 PF00042 Globin MID13_20340 PF00175 Oxidoreductase NAD-binding domain MID13_20340 PF00970 Oxidoreductase FAD-binding domain MID13_20345 PF01590 GAF domain MID13_20345 PF00158 Sigma-54 interaction domain MID13_20355 PF00691 OmpA family MID13_20355 PF04972 BON domain MID13_20365 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MID13_20365 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MID13_20370 PF16925 Tetracyclin repressor-like, C-terminal domain MID13_20370 PF00440 Bacterial regulatory proteins, tetR family MID13_20375 PF16884 N-terminal domain of oxidoreductase MID13_20375 PF00107 Zinc-binding dehydrogenase MID13_20385 PF00849 RNA pseudouridylate synthase MID13_20395 PF03466 LysR substrate binding domain MID13_20395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_20405 PF00768 D-alanyl-D-alanine carboxypeptidase MID13_20405 PF07943 Penicillin-binding protein 5, C-terminal domain MID13_20420 PF07694 5TMR of 5TMR-LYT MID13_20420 PF00990 Diguanylate cyclase, GGDEF domain MID13_20425 PF06483 Chitinase C MID13_20425 PF00704 Glycosyl hydrolases family 18 MID13_20430 PF02028 BCCT, betaine/carnitine/choline family transporter MID13_20435 PF01042 Endoribonuclease L-PSP MID13_20440 PF02567 Phenazine biosynthesis-like protein MID13_20445 PF04224 Protein of unknown function, DUF417 MID13_20465 PF00132 Bacterial transferase hexapeptide (six repeats) MID13_20465 PF12804 MobA-like NTP transferase domain MID13_20485 PF01042 Endoribonuclease L-PSP MID13_20490 PF06719 AraC-type transcriptional regulator N-terminus MID13_20490 PF12833 Helix-turn-helix domain MID13_20495 PF00465 Iron-containing alcohol dehydrogenase MID13_20500 PF00005 ABC transporter MID13_20505 PF00528 Binding-protein-dependent transport system inner membrane component MID13_20510 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID13_20515 PF00528 Binding-protein-dependent transport system inner membrane component MID13_20525 PF00593 TonB dependent receptor MID13_20525 PF07715 TonB-dependent Receptor Plug Domain MID13_20530 PF12833 Helix-turn-helix domain MID13_20530 PF02311 AraC-like ligand binding domain MID13_20535 PF03466 LysR substrate binding domain MID13_20535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_20540 PF01810 LysE type translocator MID13_20575 PF08274 PhnA Zinc-Ribbon MID13_20575 PF03831 PhnA domain MID13_20610 PF00873 AcrB/AcrD/AcrF family MID13_20615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID13_20615 PF00529 HlyD membrane-fusion protein of T1SS MID13_20630 PF00132 Bacterial transferase hexapeptide (six repeats) MID13_20635 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MID13_20635 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_20645 PF18500 CadC C-terminal domain 1 MID13_20645 PF00486 Transcriptional regulatory protein, C terminal MID13_20660 PF00873 AcrB/AcrD/AcrF family MID13_20665 PF13533 Biotin-lipoyl like MID13_20675 PF06826 Predicted Permease Membrane Region MID13_20675 PF02080 TrkA-C domain MID13_20680 PF00155 Aminotransferase class I and II MID13_20695 PF00378 Enoyl-CoA hydratase/isomerase MID13_20700 PF01032 FecCD transport family MID13_20710 PF00593 TonB dependent receptor MID13_20710 PF07715 TonB-dependent Receptor Plug Domain MID13_20715 PF12833 Helix-turn-helix domain MID13_20725 PF00005 ABC transporter MID13_20730 PF07690 Major Facilitator Superfamily MID13_20735 PF07995 Glucose / Sorbosone dehydrogenase MID13_20740 PF00313 'Cold-shock' DNA-binding domain MID13_20745 PF07152 YaeQ protein MID13_20755 PF01227 GTP cyclohydrolase I MID13_20760 PF00994 Probable molybdopterin binding domain MID13_20760 PF03454 MoeA C-terminal region (domain IV) MID13_20760 PF03453 MoeA N-terminal region (domain I and II) MID13_20765 PF00899 ThiF family MID13_20785 PF00581 Rhodanese-like domain MID13_20790 PF00563 EAL domain MID13_20790 PF00360 Phytochrome region MID13_20790 PF00990 Diguanylate cyclase, GGDEF domain MID13_20790 PF01590 GAF domain MID13_20795 PF00704 Glycosyl hydrolases family 18 MID13_20795 PF08329 Chitinase A, N-terminal domain MID13_20805 PF00923 Transaldolase/Fructose-6-phosphate aldolase MID13_20810 PF02779 Transketolase, pyrimidine binding domain MID13_20810 PF02780 Transketolase, C-terminal domain MID13_20810 PF00456 Transketolase, thiamine diphosphate binding domain MID13_20820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_20820 PF08447 PAS fold MID13_20825 PF01037 Lrp/AsnC ligand binding domain MID13_20840 PF00801 PKD domain MID13_20840 PF05547 Immune inhibitor A peptidase M6 MID13_20850 PF00580 UvrD/REP helicase N-terminal domain MID13_20850 PF12462 DNA helicase IV / RNA helicase N terminal MID13_20850 PF13361 UvrD-like helicase C-terminal domain MID13_20855 PF12805 FUSC-like inner membrane protein yccS MID13_20875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_20875 PF03466 LysR substrate binding domain MID13_20880 PF04055 Radical SAM superfamily MID13_20885 PF11230 Protein of unknown function (DUF3029) MID13_20895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_20895 PF03466 LysR substrate binding domain MID13_20910 PF00892 EamA-like transporter family MID13_20915 PF13419 Haloacid dehalogenase-like hydrolase MID13_20925 PF00465 Iron-containing alcohol dehydrogenase MID13_20945 PF02525 Flavodoxin-like fold MID13_20950 PF02254 TrkA-N domain MID13_20950 PF00999 Sodium/hydrogen exchanger family MID13_20980 PF00155 Aminotransferase class I and II MID13_20985 PF03707 Bacterial signalling protein N terminal repeat MID13_20985 PF00990 Diguanylate cyclase, GGDEF domain MID13_20985 PF00563 EAL domain MID13_20995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_20995 PF03466 LysR substrate binding domain MID13_21000 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID13_21025 PF01966 HD domain MID13_21035 PF03466 LysR substrate binding domain MID13_21035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_21040 PF01906 Putative heavy-metal-binding MID13_21070 PF00005 ABC transporter MID13_21070 PF00664 ABC transporter transmembrane region MID13_21075 PF00664 ABC transporter transmembrane region MID13_21075 PF00005 ABC transporter MID13_21080 PF08264 Anticodon-binding domain of tRNA MID13_21080 PF00133 tRNA synthetases class I (I, L, M and V) MID13_21100 PF03315 Serine dehydratase beta chain MID13_21100 PF03313 Serine dehydratase alpha chain MID13_21105 PF00854 POT family MID13_21110 PF08021 Siderophore-interacting FAD-binding domain MID13_21110 PF04954 Siderophore-interacting protein MID13_21115 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family MID13_21115 PF00356 Bacterial regulatory proteins, lacI family MID13_21120 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain MID13_21120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID13_21125 PF01202 Shikimate kinase MID13_21130 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID13_21140 PF03480 Bacterial extracellular solute-binding protein, family 7 MID13_21150 PF00392 Bacterial regulatory proteins, gntR family MID13_21150 PF07702 UTRA domain MID13_21155 PF00528 Binding-protein-dependent transport system inner membrane component MID13_21160 PF00005 ABC transporter MID13_21165 PF01266 FAD dependent oxidoreductase MID13_21175 PF00266 Aminotransferase class-V MID13_21180 PF00202 Aminotransferase class-III MID13_21185 PF13419 Haloacid dehalogenase-like hydrolase MID13_21190 PF13488 Glycine zipper MID13_21190 PF00691 OmpA family MID13_21195 PF02566 OsmC-like protein MID13_21200 PF01625 Peptide methionine sulfoxide reductase MID13_21200 PF01641 SelR domain MID13_21205 PF02386 Cation transport protein MID13_21210 PF02254 TrkA-N domain MID13_21210 PF02080 TrkA-C domain MID13_21215 PF00924 Mechanosensitive ion channel MID13_21220 PF01050 Mannose-6-phosphate isomerase MID13_21220 PF00483 Nucleotidyl transferase MID13_21225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MID13_21225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MID13_21225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MID13_21225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MID13_21235 PF00793 DAHP synthetase I family MID13_21240 PF12843 Putative quorum-sensing-regulated virulence factor MID13_21255 PF18416 N-acetylglucosamine binding protein domain 2 MID13_21255 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading MID13_21260 PF01040 UbiA prenyltransferase family MID13_21265 PF02628 Cytochrome oxidase assembly protein MID13_21285 PF00510 Cytochrome c oxidase subunit III MID13_21290 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 MID13_21295 PF00115 Cytochrome C and Quinol oxidase polypeptide I MID13_21300 PF02790 Cytochrome C oxidase subunit II, transmembrane domain MID13_21300 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MID13_21305 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MID13_21305 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MID13_21305 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MID13_21305 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MID13_21310 PF01810 LysE type translocator MID13_21315 PF01557 Fumarylacetoacetate (FAA) hydrolase family MID13_21325 PF00012 Hsp70 protein MID13_21345 PF09308 LuxQ, periplasmic MID13_21345 PF00512 His Kinase A (phospho-acceptor) domain MID13_21345 PF00072 Response regulator receiver domain MID13_21345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_21355 PF01541 GIY-YIG catalytic domain MID13_21360 PF04337 Protein of unknown function, DUF480 MID13_21370 PF04363 Protein of unknown function (DUF496) MID13_21385 PF01627 Hpt domain MID13_21385 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MID13_21385 PF00512 His Kinase A (phospho-acceptor) domain MID13_21385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_21385 PF00672 HAMP domain MID13_21385 PF00072 Response regulator receiver domain MID13_21390 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MID13_21390 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MID13_21395 PF00175 Oxidoreductase NAD-binding domain MID13_21395 PF00970 Oxidoreductase FAD-binding domain MID13_21395 PF00111 2Fe-2S iron-sulfur cluster binding domain MID13_21400 PF03063 Prismane/CO dehydrogenase family MID13_21415 PF01810 LysE type translocator MID13_21420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_21420 PF03466 LysR substrate binding domain MID13_21435 PF13520 Amino acid permease MID13_21440 PF00392 Bacterial regulatory proteins, gntR family MID13_21440 PF00155 Aminotransferase class I and II MID13_21450 PF03253 Urea transporter MID13_21455 PF12833 Helix-turn-helix domain MID13_21470 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin MID13_21475 PF07969 Amidohydrolase family MID13_21480 PF00313 'Cold-shock' DNA-binding domain MID13_21485 PF00990 Diguanylate cyclase, GGDEF domain MID13_21500 PF00271 Helicase conserved C-terminal domain MID13_21500 PF00270 DEAD/DEAH box helicase MID13_21505 PF03707 Bacterial signalling protein N terminal repeat MID13_21505 PF00990 Diguanylate cyclase, GGDEF domain MID13_21505 PF00563 EAL domain MID13_21520 PF00672 HAMP domain MID13_21520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_21520 PF00512 His Kinase A (phospho-acceptor) domain MID13_21525 PF00486 Transcriptional regulatory protein, C terminal MID13_21525 PF00072 Response regulator receiver domain MID13_21530 PF00873 AcrB/AcrD/AcrF family MID13_21540 PF02321 Outer membrane efflux protein MID13_21550 PF07662 Na+ dependent nucleoside transporter C-terminus MID13_21550 PF07670 Nucleoside recognition MID13_21550 PF01773 Na+ dependent nucleoside transporter N-terminus MID13_21560 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MID13_21565 PF03611 PTS system sugar-specific permease component MID13_21570 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MID13_21575 PF01966 HD domain MID13_21580 PF13302 Acetyltransferase (GNAT) domain MID13_21585 PF00512 His Kinase A (phospho-acceptor) domain MID13_21585 PF00672 HAMP domain MID13_21585 PF16527 Two-component sensor protein CpxA, periplasmic domain MID13_21585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_21590 PF00072 Response regulator receiver domain MID13_21590 PF00486 Transcriptional regulatory protein, C terminal MID13_21600 PF00563 EAL domain MID13_21600 PF00990 Diguanylate cyclase, GGDEF domain MID13_21600 PF13426 PAS domain MID13_21620 PF00990 Diguanylate cyclase, GGDEF domain MID13_21620 PF00563 EAL domain MID13_21620 PF08447 PAS fold MID13_21620 PF08448 PAS fold MID13_21625 PF03707 Bacterial signalling protein N terminal repeat MID13_21625 PF00990 Diguanylate cyclase, GGDEF domain MID13_21625 PF00563 EAL domain MID13_21630 PF00392 Bacterial regulatory proteins, gntR family MID13_21630 PF07729 FCD domain MID13_21635 PF00005 ABC transporter MID13_21655 PF01872 RibD C-terminal domain MID13_21655 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MID13_21665 PF00849 RNA pseudouridylate synthase MID13_21675 PF07690 Major Facilitator Superfamily MID13_21690 PF12833 Helix-turn-helix domain MID13_21690 PF02311 AraC-like ligand binding domain MID13_21700 PF07690 Major Facilitator Superfamily MID13_21705 PF12833 Helix-turn-helix domain MID13_21705 PF02311 AraC-like ligand binding domain MID13_21730 PF12706 Beta-lactamase superfamily domain MID13_21735 PF00672 HAMP domain MID13_21735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_21735 PF02743 Cache domain MID13_21740 PF12793 Sugar transport-related sRNA regulator N-term MID13_21740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID13_21745 PF08443 RimK-like ATP-grasp domain MID13_21745 PF18030 RimK PreATP-grasp domain MID13_21750 PF18030 RimK PreATP-grasp domain MID13_21750 PF08443 RimK-like ATP-grasp domain MID13_21765 PF03009 Glycerophosphoryl diester phosphodiesterase family MID13_21785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MID13_21795 PF04399 Glutaredoxin 2, C terminal domain MID13_21795 PF13417 Glutathione S-transferase, N-terminal domain MID13_21800 PF00672 HAMP domain MID13_21800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_21805 PF03618 Kinase/pyrophosphorylase MID13_21810 PF00391 PEP-utilising enzyme, mobile domain MID13_21810 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MID13_21810 PF02896 PEP-utilising enzyme, TIM barrel domain MID13_21825 PF00132 Bacterial transferase hexapeptide (six repeats) MID13_21830 PF12706 Beta-lactamase superfamily domain MID13_21840 PF07969 Amidohydrolase family MID13_21845 PF00005 ABC transporter MID13_21850 PF00005 ABC transporter MID13_21855 PF06007 Phosphonate metabolism protein PhnJ MID13_21860 PF05861 Bacterial phosphonate metabolism protein (PhnI) MID13_21865 PF05845 Bacterial phosphonate metabolism protein (PhnH) MID13_21870 PF06754 Phosphonate metabolism protein PhnG MID13_21875 PF00392 Bacterial regulatory proteins, gntR family MID13_21875 PF07702 UTRA domain MID13_21880 PF00528 Binding-protein-dependent transport system inner membrane component MID13_21890 PF00005 ABC transporter MID13_21895 PF08348 YheO-like PAS domain MID13_21895 PF13309 HTH domain MID13_21900 PF01042 Endoribonuclease L-PSP MID13_21905 PF00375 Sodium:dicarboxylate symporter family MID13_21910 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_21910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID13_21920 PF00884 Sulfatase MID13_21990 PF04013 Putative SAM-dependent RNA methyltransferase MID13_22010 PF04542 Sigma-70 region 2 MID13_22010 PF08281 Sigma-70, region 4 MID13_22015 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MID13_22045 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MID13_22055 PF03466 LysR substrate binding domain MID13_22055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_22075 PF01638 HxlR-like helix-turn-helix MID13_22080 PF03466 LysR substrate binding domain MID13_22080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_22085 PF00106 short chain dehydrogenase MID13_22095 PF03922 OmpW family MID13_22100 PF00483 Nucleotidyl transferase MID13_22105 PF03606 C4-dicarboxylate anaerobic carrier MID13_22150 PF00528 Binding-protein-dependent transport system inner membrane component MID13_22155 PF00528 Binding-protein-dependent transport system inner membrane component MID13_22160 PF00005 ABC transporter MID13_22175 PF00158 Sigma-54 interaction domain MID13_22175 PF02954 Bacterial regulatory protein, Fis family MID13_22175 PF00072 Response regulator receiver domain MID13_22180 PF02743 Cache domain MID13_22180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_22180 PF00512 His Kinase A (phospho-acceptor) domain MID13_22185 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MID13_22185 PF13378 Enolase C-terminal domain-like MID13_22195 PF03466 LysR substrate binding domain MID13_22195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_22205 PF00248 Aldo/keto reductase family MID13_22210 PF00367 phosphotransferase system, EIIB MID13_22215 PF03480 Bacterial extracellular solute-binding protein, family 7 MID13_22220 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MID13_22230 PF01116 Fructose-bisphosphate aldolase class-II MID13_22245 PF01263 Aldose 1-epimerase MID13_22250 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID13_22250 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MID13_22255 PF00294 pfkB family carbohydrate kinase MID13_22260 PF08220 DeoR-like helix-turn-helix domain MID13_22260 PF00455 DeoR C terminal sensor domain MID13_22275 PF17200 Single Cache domain 2 MID13_22275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_22275 PF00672 HAMP domain MID13_22285 PF03466 LysR substrate binding domain MID13_22285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_22295 PF12729 Four helix bundle sensory module for signal transduction MID13_22295 PF00672 HAMP domain MID13_22295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_22305 PF00892 EamA-like transporter family MID13_22310 PF00155 Aminotransferase class I and II MID13_22310 PF00392 Bacterial regulatory proteins, gntR family MID13_22315 PF00356 Bacterial regulatory proteins, lacI family MID13_22320 PF03553 Na+/H+ antiporter family MID13_22325 PF00155 Aminotransferase class I and II MID13_22340 PF08241 Methyltransferase domain MID13_22345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_22345 PF03466 LysR substrate binding domain MID13_22350 PF07690 Major Facilitator Superfamily MID13_22355 PF07690 Major Facilitator Superfamily MID13_22360 PF00768 D-alanyl-D-alanine carboxypeptidase MID13_22360 PF07943 Penicillin-binding protein 5, C-terminal domain MID13_22365 PF02875 Mur ligase family, glutamate ligase domain MID13_22365 PF01225 Mur ligase family, catalytic domain MID13_22365 PF08245 Mur ligase middle domain MID13_22370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_22370 PF03466 LysR substrate binding domain MID13_22375 PF03222 Tryptophan/tyrosine permease family MID13_22380 PF03825 Nucleoside H+ symporter MID13_22385 PF03747 ADP-ribosylglycohydrolase MID13_22390 PF00294 pfkB family carbohydrate kinase MID13_22395 PF07690 Major Facilitator Superfamily MID13_22400 PF00392 Bacterial regulatory proteins, gntR family MID13_22400 PF07702 UTRA domain MID13_22405 PF00672 HAMP domain MID13_22405 PF12729 Four helix bundle sensory module for signal transduction MID13_22405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_22420 PF00440 Bacterial regulatory proteins, tetR family MID13_22420 PF13977 BetI-type transcriptional repressor, C-terminal MID13_22435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MID13_22445 PF12833 Helix-turn-helix domain MID13_22450 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MID13_22450 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MID13_22455 PF01238 Phosphomannose isomerase type I MID13_22470 PF17912 MalK OB fold domain MID13_22470 PF03459 TOBE domain MID13_22470 PF00005 ABC transporter MID13_22475 PF13419 Haloacid dehalogenase-like hydrolase MID13_22490 PF00528 Binding-protein-dependent transport system inner membrane component MID13_22495 PF00528 Binding-protein-dependent transport system inner membrane component MID13_22500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_22500 PF03466 LysR substrate binding domain MID13_22505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID13_22510 PF00246 Zinc carboxypeptidase MID13_22515 PF02028 BCCT, betaine/carnitine/choline family transporter MID13_22520 PF00557 Metallopeptidase family M24 MID13_22525 PF00248 Aldo/keto reductase family MID13_22530 PF03466 LysR substrate binding domain MID13_22530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_22535 PF00171 Aldehyde dehydrogenase family MID13_22540 PF10415 Fumarase C C-terminus MID13_22540 PF00206 Lyase MID13_22545 PF00893 Small Multidrug Resistance protein MID13_22555 PF08240 Alcohol dehydrogenase GroES-like domain MID13_22555 PF00107 Zinc-binding dehydrogenase MID13_22560 PF00756 Putative esterase MID13_22565 PF00893 Small Multidrug Resistance protein MID13_22575 PF00293 NUDIX domain MID13_22575 PF13344 Haloacid dehalogenase-like hydrolase MID13_22585 PF03606 C4-dicarboxylate anaerobic carrier MID13_22590 PF01546 Peptidase family M20/M25/M40 MID13_22590 PF07687 Peptidase dimerisation domain MID13_22600 PF01810 LysE type translocator MID13_22615 PF00158 Sigma-54 interaction domain MID13_22615 PF02954 Bacterial regulatory protein, Fis family MID13_22615 PF01590 GAF domain MID13_22620 PF00672 HAMP domain MID13_22620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID13_22625 PF03466 LysR substrate binding domain MID13_22625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_22630 PF02798 Glutathione S-transferase, N-terminal domain MID13_22630 PF14497 Glutathione S-transferase, C-terminal domain MID13_22635 PF13443 Cro/C1-type HTH DNA-binding domain MID13_22645 PF03466 LysR substrate binding domain MID13_22645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_22685 PF06441 Epoxide hydrolase N terminus MID13_22690 PF00171 Aldehyde dehydrogenase family MID13_22695 PF03466 LysR substrate binding domain MID13_22695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_22700 PF03605 Anaerobic c4-dicarboxylate membrane transporter MID13_22705 PF13419 Haloacid dehalogenase-like hydrolase MID13_22710 PF01966 HD domain MID13_22725 PF00392 Bacterial regulatory proteins, gntR family MID13_22725 PF07729 FCD domain MID13_22730 PF03450 CO dehydrogenase flavoprotein C-terminal domain MID13_22730 PF00941 FAD binding domain in molybdopterin dehydrogenase MID13_22735 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MID13_22735 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MID13_22745 PF01979 Amidohydrolase family MID13_22765 PF04229 GrpB protein MID13_22790 PF04115 Ureidoglycolate lyase MID13_22795 PF03561 Allantoicase repeat MID13_22800 PF09349 OHCU decarboxylase MID13_22800 PF01014 Uricase MID13_22810 PF00576 HIUase/Transthyretin family MID13_22815 PF00860 Permease family MID13_22820 PF00860 Permease family MID13_22825 PF01979 Amidohydrolase family MID13_22830 PF01979 Amidohydrolase family MID13_22835 PF00873 AcrB/AcrD/AcrF family MID13_22845 PF00072 Response regulator receiver domain MID13_22845 PF00486 Transcriptional regulatory protein, C terminal MID13_22850 PF00512 His Kinase A (phospho-acceptor) domain MID13_22850 PF01627 Hpt domain MID13_22850 PF00989 PAS fold MID13_22850 PF00072 Response regulator receiver domain MID13_22850 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID13_22850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_22860 PF13660 Domain of unknown function (DUF4147) MID13_22860 PF05161 MOFRL family MID13_22865 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MID13_22865 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID13_22870 PF01261 Xylose isomerase-like TIM barrel MID13_22875 PF00205 Thiamine pyrophosphate enzyme, central domain MID13_22875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID13_22875 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID13_22880 PF01274 Malate synthase MID13_22890 PF07681 DoxX MID13_22895 PF03466 LysR substrate binding domain MID13_22895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_22900 PF01047 MarR family MID13_22910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_22910 PF03466 LysR substrate binding domain MID13_22935 PF00892 EamA-like transporter family MID13_22965 PF07238 PilZ domain MID13_22965 PF12945 Flagellar protein YcgR MID13_22970 PF05362 Lon protease (S16) C-terminal proteolytic domain MID13_22970 PF13654 AAA domain MID13_22980 PF00005 ABC transporter MID13_22980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_22985 PF00356 Bacterial regulatory proteins, lacI family MID13_22995 PF01263 Aldose 1-epimerase MID13_23000 PF06165 Glycosyltransferase family 36 MID13_23000 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain MID13_23005 PF17912 MalK OB fold domain MID13_23005 PF00005 ABC transporter MID13_23005 PF03459 TOBE domain MID13_23010 PF00232 Glycosyl hydrolase family 1 MID13_23015 PF00528 Binding-protein-dependent transport system inner membrane component MID13_23020 PF00528 Binding-protein-dependent transport system inner membrane component MID13_23030 PF00356 Bacterial regulatory proteins, lacI family MID13_23040 PF00326 Prolyl oligopeptidase family MID13_23040 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain MID13_23045 PF03466 LysR substrate binding domain MID13_23045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_23050 PF02652 L-lactate permease MID13_23055 PF01070 FMN-dependent dehydrogenase MID13_23070 PF12833 Helix-turn-helix domain MID13_23070 PF01497 Periplasmic binding protein MID13_23075 PF00155 Aminotransferase class I and II MID13_23085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_23085 PF03466 LysR substrate binding domain MID13_23090 PF14863 Alkyl sulfatase dimerisation MID13_23090 PF14864 Alkyl sulfatase C-terminal MID13_23090 PF00753 Metallo-beta-lactamase superfamily MID13_23095 PF00581 Rhodanese-like domain MID13_23095 PF17773 UPF0176 acylphosphatase like domain MID13_23115 PF01238 Phosphomannose isomerase type I MID13_23120 PF07690 Major Facilitator Superfamily MID13_23125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_23125 PF05231 MASE1 MID13_23125 PF07730 Histidine kinase MID13_23130 PF00072 Response regulator receiver domain MID13_23130 PF00196 Bacterial regulatory proteins, luxR family MID13_23135 PF07690 Major Facilitator Superfamily MID13_23145 PF00563 EAL domain MID13_23145 PF00990 Diguanylate cyclase, GGDEF domain MID13_23145 PF03707 Bacterial signalling protein N terminal repeat MID13_23155 PF02678 Pirin MID13_23155 PF05726 Pirin C-terminal cupin domain MID13_23160 PF06865 Pyrimidine/purine nucleoside phosphorylase MID13_23170 PF08329 Chitinase A, N-terminal domain MID13_23170 PF00704 Glycosyl hydrolases family 18 MID13_23175 PF12697 Alpha/beta hydrolase family MID13_23200 PF12852 Cupin MID13_23200 PF12833 Helix-turn-helix domain MID13_23220 PF01124 MAPEG family MID13_23225 PF07670 Nucleoside recognition MID13_23230 PF07670 Nucleoside recognition MID13_23240 PF03600 Citrate transporter MID13_23250 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MID13_23250 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MID13_23255 PF00730 HhH-GPD superfamily base excision DNA repair protein MID13_23255 PF06029 AlkA N-terminal domain MID13_23265 PF03466 LysR substrate binding domain MID13_23265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_23280 PF05068 Mannitol repressor MID13_23285 PF01232 Mannitol dehydrogenase Rossmann domain MID13_23285 PF08125 Mannitol dehydrogenase C-terminal domain MID13_23290 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MID13_23290 PF02378 Phosphotransferase system, EIIC MID13_23290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MID13_23300 PF00881 Nitroreductase family MID13_23305 PF00258 Flavodoxin MID13_23305 PF00753 Metallo-beta-lactamase superfamily MID13_23305 PF00301 Rubredoxin MID13_23310 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID13_23310 PF18113 Rubredoxin binding C-terminal domain MID13_23315 PF03616 Sodium/glutamate symporter MID13_23320 PF10928 Protein of unknown function (DUF2810) MID13_23330 PF14552 Tautomerase enzyme MID13_23340 PF04542 Sigma-70 region 2 MID13_23340 PF04545 Sigma-70, region 4 MID13_23345 PF12973 ChrR Cupin-like domain MID13_23355 PF00875 DNA photolyase MID13_23355 PF03441 FAD binding domain of DNA photolyase MID13_23365 PF00106 short chain dehydrogenase MID13_23370 PF01593 Flavin containing amine oxidoreductase MID13_23405 PF00106 short chain dehydrogenase MID13_23410 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) MID13_23420 PF00155 Aminotransferase class I and II MID13_23435 PF02378 Phosphotransferase system, EIIC MID13_23435 PF00367 phosphotransferase system, EIIB MID13_23440 PF07689 KaiB domain MID13_23440 PF00512 His Kinase A (phospho-acceptor) domain MID13_23440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_23445 PF00486 Transcriptional regulatory protein, C terminal MID13_23445 PF00072 Response regulator receiver domain MID13_23450 PF03466 LysR substrate binding domain MID13_23450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_23460 PF07690 Major Facilitator Superfamily MID13_23465 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MID13_23480 PF02355 Protein export membrane protein MID13_23480 PF07549 SecD/SecF GG Motif MID13_23485 PF02355 Protein export membrane protein MID13_23485 PF13721 SecD export protein N-terminal TM region MID13_23485 PF07549 SecD/SecF GG Motif MID13_23495 PF00675 Insulinase (Peptidase family M16) MID13_23495 PF05193 Peptidase M16 inactive domain MID13_23500 PF05193 Peptidase M16 inactive domain MID13_23500 PF00675 Insulinase (Peptidase family M16) MID13_23505 PF00072 Response regulator receiver domain MID13_23505 PF04397 LytTr DNA-binding domain MID13_23510 PF06580 Histidine kinase MID13_23510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_23510 PF07694 5TMR of 5TMR-LYT MID13_23525 PF12704 MacB-like periplasmic core domain MID13_23525 PF02687 FtsX-like permease family MID13_23530 PF00005 ABC transporter MID13_23540 PF02627 Carboxymuconolactone decarboxylase family MID13_23545 PF03466 LysR substrate binding domain MID13_23545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID13_23550 PF00080 Copper/zinc superoxide dismutase (SODC) MID13_23560 PF06628 Catalase-related immune-responsive MID13_23560 PF00199 Catalase MID13_23565 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MID13_23565 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID13_23580 PF01709 Transcriptional regulator MID13_23590 PF01329 Pterin 4 alpha carbinolamine dehydratase MID13_23595 PF00351 Biopterin-dependent aromatic amino acid hydroxylase MID13_23600 PF00501 AMP-binding enzyme MID13_23600 PF13193 AMP-binding enzyme C-terminal domain MID13_23605 PF00696 Amino acid kinase family MID13_23610 PF14497 Glutathione S-transferase, C-terminal domain MID13_23610 PF02798 Glutathione S-transferase, N-terminal domain MID13_23620 PF04209 homogentisate 1,2-dioxygenase MID13_23625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID13_23640 PF00072 Response regulator receiver domain MID13_23640 PF01627 Hpt domain MID13_23640 PF00512 His Kinase A (phospho-acceptor) domain MID13_23640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID13_23640 PF00672 HAMP domain MID13_23640 PF17149 Periplasmic sensor domain found in signal transduction proteins MID13_23650 PF00925 GTP cyclohydrolase II MID13_23650 PF08719 Domain of unknown function (DUF1768) MID13_23660 PF00005 ABC transporter MID13_23660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_23665 PF00005 ABC transporter MID13_23665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID13_23680 PF18607 ParA helix turn helix domain MID13_23680 PF13614 AAA domain MID13_23685 PF08775 ParB family MID13_23685 PF02195 ParB-like nuclease domain MID13_23690 PF13718 GNAT acetyltransferase 2 MID13_23690 PF05127 Helicase MID13_23715 PF12161 HsdM N-terminal domain MID13_23715 PF02384 N-6 DNA Methylase MID13_23720 PF01420 Type I restriction modification DNA specificity domain MID13_23725 PF08463 EcoEI R protein C-terminal MID13_23725 PF00271 Helicase conserved C-terminal domain MID13_23725 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) MID13_23725 PF04851 Type III restriction enzyme, res subunit MID13_23820 PF02796 Helix-turn-helix domain of resolvase MID13_23820 PF00239 Resolvase, N terminal domain MID13_23830 PF02796 Helix-turn-helix domain of resolvase MID13_23830 PF00239 Resolvase, N terminal domain