locus-tag class description CU052_00025 PF02796 Helix-turn-helix domain of resolvase CU052_00025 PF00239 Resolvase, N terminal domain CU052_00060 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CU052_00160 PF02195 ParB-like nuclease domain CU052_00160 PF17762 HTH domain found in ParB protein CU052_00205 PF08751 TrwC relaxase CU052_00205 PF18340 DNA relaxase TraI 2B/2B-like domain CU052_00205 PF18272 single-stranded DNA binding TraI N-terminal subdomain CU052_00205 PF07057 DNA helicase TraI CU052_00220 PF10412 Type IV secretion-system coupling protein DNA-binding domain CU052_00220 PF12615 F sex factor protein N terminal CU052_00235 PF01848 Hok/gef family CU052_00265 PF13728 F plasmid transfer operon protein CU052_00310 PF06834 TraU protein CU052_00380 PF04986 Putative transposase CU052_00380 PF14319 Transposase zinc-binding domain CU052_00390 PF14319 Transposase zinc-binding domain CU052_00390 PF04986 Putative transposase CU052_00410 PF02348 Cytidylyltransferase CU052_00415 PF03966 Trm112p-like protein CU052_00420 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CU052_00425 PF00664 ABC transporter transmembrane region CU052_00425 PF00005 ABC transporter CU052_00440 PF00753 Metallo-beta-lactamase superfamily CU052_00440 PF03772 Competence protein CU052_00450 PF02687 FtsX-like permease family CU052_00450 PF12704 MacB-like periplasmic core domain CU052_00455 PF00005 ABC transporter CU052_00460 PF02687 FtsX-like permease family CU052_00460 PF12704 MacB-like periplasmic core domain CU052_00470 PF00270 DEAD/DEAH box helicase CU052_00470 PF00271 Helicase conserved C-terminal domain CU052_00470 PF03461 TRCF domain CU052_00470 PF17757 UvrB interaction domain CU052_00470 PF02559 CarD-like/TRCF domain CU052_00485 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_00490 PF05728 Uncharacterised protein family (UPF0227) CU052_00500 PF13036 Peptidoglycan-synthase activator LpoB CU052_00500 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CU052_00515 PF01230 HIT domain CU052_00520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_00520 PF00672 HAMP domain CU052_00530 PF01048 Phosphorylase superfamily CU052_00535 PF00403 Heavy-metal-associated domain CU052_00540 PF01554 MatE CU052_00545 PF00478 IMP dehydrogenase / GMP reductase domain CU052_00545 PF00571 CBS domain CU052_00555 PF11953 Domain of unknown function (DUF3470) CU052_00555 PF00037 4Fe-4S binding domain CU052_00560 PF00588 SpoU rRNA Methylase family CU052_00560 PF08032 RNA 2'-O ribose methyltransferase substrate binding CU052_00565 PF00690 Cation transporter/ATPase, N-terminus CU052_00565 PF00689 Cation transporting ATPase, C-terminus CU052_00575 PF05230 MASE2 domain CU052_00575 PF00990 Diguanylate cyclase, GGDEF domain CU052_00585 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CU052_00590 PF09619 Type III secretion system lipoprotein chaperone (YscW) CU052_00605 PF01037 Lrp/AsnC ligand binding domain CU052_00605 PF13404 AsnC-type helix-turn-helix domain CU052_00610 PF00291 Pyridoxal-phosphate dependent enzyme CU052_00705 PF13007 Transposase C of IS166 homeodomain CU052_00705 PF13817 IS66 C-terminal element CU052_00705 PF03050 Transposase IS66 family CU052_00705 PF13005 zinc-finger binding domain of transposase IS66 CU052_00735 PF00873 AcrB/AcrD/AcrF family CU052_00740 PF13533 Biotin-lipoyl like CU052_00785 PF07690 Major Facilitator Superfamily CU052_00790 PF03601 Conserved hypothetical protein 698 CU052_00805 PF03466 LysR substrate binding domain CU052_00805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_00810 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CU052_00810 PF02378 Phosphotransferase system, EIIC CU052_00810 PF00367 phosphotransferase system, EIIB CU052_00815 PF13193 AMP-binding enzyme C-terminal domain CU052_00815 PF00501 AMP-binding enzyme CU052_00820 PF13378 Enolase C-terminal domain-like CU052_00825 PF00378 Enoyl-CoA hydratase/isomerase CU052_00830 PF12697 Alpha/beta hydrolase family CU052_00835 PF16582 Middle domain of thiamine pyrophosphate CU052_00835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CU052_00835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CU052_00840 PF00425 chorismate binding enzyme CU052_00845 PF00155 Aminotransferase class I and II CU052_00875 PF02899 Phage integrase, N-terminal SAM-like domain CU052_00875 PF00589 Phage integrase family CU052_00885 PF13007 Transposase C of IS166 homeodomain CU052_00885 PF13817 IS66 C-terminal element CU052_00885 PF03050 Transposase IS66 family CU052_00885 PF13005 zinc-finger binding domain of transposase IS66 CU052_00905 PF01648 4'-phosphopantetheinyl transferase superfamily CU052_00915 PF00975 Thioesterase domain CU052_00920 PF00144 Beta-lactamase CU052_00925 PF02801 Beta-ketoacyl synthase, C-terminal domain CU052_00925 PF00109 Beta-ketoacyl synthase, N-terminal domain CU052_00925 PF00698 Acyl transferase domain CU052_00925 PF00550 Phosphopantetheine attachment site CU052_00925 PF16197 Ketoacyl-synthetase C-terminal extension CU052_00925 PF00668 Condensation domain CU052_00940 PF00005 ABC transporter CU052_00945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_00950 PF00550 Phosphopantetheine attachment site CU052_00950 PF00501 AMP-binding enzyme CU052_00950 PF13193 AMP-binding enzyme C-terminal domain CU052_00950 PF00668 Condensation domain CU052_00960 PF01425 Amidase CU052_00965 PF00550 Phosphopantetheine attachment site CU052_00965 PF00668 Condensation domain CU052_00965 PF13193 AMP-binding enzyme C-terminal domain CU052_00965 PF00501 AMP-binding enzyme CU052_00970 PF00668 Condensation domain CU052_00970 PF00501 AMP-binding enzyme CU052_00970 PF13193 AMP-binding enzyme C-terminal domain CU052_00970 PF00550 Phosphopantetheine attachment site CU052_00975 PF00550 Phosphopantetheine attachment site CU052_00975 PF00501 AMP-binding enzyme CU052_00975 PF13193 AMP-binding enzyme C-terminal domain CU052_00975 PF00668 Condensation domain CU052_00980 PF00550 Phosphopantetheine attachment site CU052_00980 PF00668 Condensation domain CU052_00980 PF00501 AMP-binding enzyme CU052_00980 PF13193 AMP-binding enzyme C-terminal domain CU052_00985 PF00109 Beta-ketoacyl synthase, N-terminal domain CU052_00985 PF16197 Ketoacyl-synthetase C-terminal extension CU052_00985 PF00668 Condensation domain CU052_00985 PF02801 Beta-ketoacyl synthase, C-terminal domain CU052_00985 PF00550 Phosphopantetheine attachment site CU052_00985 PF00698 Acyl transferase domain CU052_00990 PF00975 Thioesterase domain CU052_00990 PF13193 AMP-binding enzyme C-terminal domain CU052_00990 PF00550 Phosphopantetheine attachment site CU052_00990 PF00501 AMP-binding enzyme CU052_00990 PF00668 Condensation domain CU052_01000 PF00550 Phosphopantetheine attachment site CU052_01005 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CU052_01005 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CU052_01010 PF00698 Acyl transferase domain CU052_01010 PF00668 Condensation domain CU052_01010 PF00550 Phosphopantetheine attachment site CU052_01010 PF02801 Beta-ketoacyl synthase, C-terminal domain CU052_01010 PF16197 Ketoacyl-synthetase C-terminal extension CU052_01010 PF00109 Beta-ketoacyl synthase, N-terminal domain CU052_01015 PF14765 Polyketide synthase dehydratase CU052_01015 PF00550 Phosphopantetheine attachment site CU052_01015 PF00109 Beta-ketoacyl synthase, N-terminal domain CU052_01015 PF16197 Ketoacyl-synthetase C-terminal extension CU052_01015 PF02801 Beta-ketoacyl synthase, C-terminal domain CU052_01015 PF08659 KR domain CU052_01015 PF00501 AMP-binding enzyme CU052_01015 PF13193 AMP-binding enzyme C-terminal domain CU052_01015 PF00668 Condensation domain CU052_01060 PF13145 PPIC-type PPIASE domain CU052_01065 PF00216 Bacterial DNA-binding protein CU052_01070 PF02190 ATP-dependent protease La (LON) substrate-binding domain CU052_01070 PF05362 Lon protease (S16) C-terminal proteolytic domain CU052_01070 PF00004 ATPase family associated with various cellular activities (AAA) CU052_01075 PF07724 AAA domain (Cdc48 subfamily) CU052_01075 PF10431 C-terminal, D2-small domain, of ClpB protein CU052_01075 PF06689 ClpX C4-type zinc finger CU052_01080 PF00574 Clp protease CU052_01085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CU052_01085 PF05697 Bacterial trigger factor protein (TF) CU052_01085 PF05698 Bacterial trigger factor protein (TF) C-terminus CU052_01090 PF00512 His Kinase A (phospho-acceptor) domain CU052_01090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_01090 PF02743 Cache domain CU052_01095 PF02954 Bacterial regulatory protein, Fis family CU052_01095 PF00072 Response regulator receiver domain CU052_01095 PF00158 Sigma-54 interaction domain CU052_01105 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CU052_01110 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CU052_01115 PF03480 Bacterial extracellular solute-binding protein, family 7 CU052_01120 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CU052_01130 PF02386 Cation transport protein CU052_01135 PF02254 TrkA-N domain CU052_01135 PF02080 TrkA-C domain CU052_01140 PF00271 Helicase conserved C-terminal domain CU052_01140 PF00270 DEAD/DEAH box helicase CU052_01145 PF03471 Transporter associated domain CU052_01145 PF00571 CBS domain CU052_01145 PF01595 Cyclin M transmembrane N-terminal domain CU052_01150 PF07715 TonB-dependent Receptor Plug Domain CU052_01150 PF00593 TonB dependent receptor CU052_01165 PF00550 Phosphopantetheine attachment site CU052_01165 PF00975 Thioesterase domain CU052_01165 PF13193 AMP-binding enzyme C-terminal domain CU052_01165 PF00501 AMP-binding enzyme CU052_01165 PF00501 AMP-binding enzyme CU052_01165 PF00668 Condensation domain CU052_01165 PF13193 AMP-binding enzyme C-terminal domain CU052_01165 PF00550 Phosphopantetheine attachment site CU052_01165 PF00668 Condensation domain CU052_01165 PF00975 Thioesterase domain CU052_01170 PF00550 Phosphopantetheine attachment site CU052_01170 PF00857 Isochorismatase family CU052_01175 PF00501 AMP-binding enzyme CU052_01175 PF13193 AMP-binding enzyme C-terminal domain CU052_01180 PF00425 chorismate binding enzyme CU052_01205 PF04820 Tryptophan halogenase CU052_01230 PF00550 Phosphopantetheine attachment site CU052_01235 PF00550 Phosphopantetheine attachment site CU052_01245 PF13193 AMP-binding enzyme C-terminal domain CU052_01245 PF00501 AMP-binding enzyme CU052_01250 PF07977 FabA-like domain CU052_01255 PF00535 Glycosyl transferase family 2 CU052_01260 PF00221 Aromatic amino acid lyase CU052_01285 PF02801 Beta-ketoacyl synthase, C-terminal domain CU052_01285 PF00109 Beta-ketoacyl synthase, N-terminal domain CU052_01290 PF07977 FabA-like domain CU052_01300 PF02801 Beta-ketoacyl synthase, C-terminal domain CU052_01300 PF00109 Beta-ketoacyl synthase, N-terminal domain CU052_01315 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CU052_01315 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CU052_01325 PF00145 C-5 cytosine-specific DNA methylase CU052_01330 PF01773 Na+ dependent nucleoside transporter N-terminus CU052_01330 PF07670 Nucleoside recognition CU052_01330 PF07662 Na+ dependent nucleoside transporter C-terminus CU052_01335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_01335 PF03466 LysR substrate binding domain CU052_01340 PF13406 Transglycosylase SLT domain CU052_01345 PF05166 YcgL domain CU052_01350 PF05209 Septum formation inhibitor MinC, N-terminal domain CU052_01350 PF03775 Septum formation inhibitor MinC, C-terminal domain CU052_01355 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CU052_01360 PF03776 Septum formation topological specificity factor MinE CU052_01365 PF00570 HRDC domain CU052_01365 PF01612 3'-5' exonuclease CU052_01370 PF00501 AMP-binding enzyme CU052_01370 PF13193 AMP-binding enzyme C-terminal domain CU052_01375 PF00561 alpha/beta hydrolase fold CU052_01380 PF03843 Outer membrane lipoprotein Slp family CU052_01390 PF00814 Glycoprotease family CU052_01395 PF04851 Type III restriction enzyme, res subunit CU052_01395 PF13307 Helicase C-terminal domain CU052_01400 PF01842 ACT domain CU052_01400 PF00551 Formyl transferase CU052_01405 PF06185 YecM protein CU052_01415 PF03485 Arginyl tRNA synthetase N terminal domain CU052_01415 PF05746 DALR anticodon binding domain CU052_01415 PF00750 tRNA synthetases class I (R) CU052_01435 PF04023 FeoA domain CU052_01440 PF12833 Helix-turn-helix domain CU052_01440 PF02311 AraC-like ligand binding domain CU052_01445 PF01297 Zinc-uptake complex component A periplasmic CU052_01450 PF00005 ABC transporter CU052_01455 PF00950 ABC 3 transport family CU052_01460 PF02629 CoA binding domain CU052_01460 PF00549 CoA-ligase CU052_01465 PF00549 CoA-ligase CU052_01465 PF08442 ATP-grasp domain CU052_01470 PF00364 Biotin-requiring enzyme CU052_01470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CU052_01470 PF02817 e3 binding domain CU052_01475 PF16870 2-oxoglutarate dehydrogenase C-terminal CU052_01475 PF16078 2-oxoglutarate dehydrogenase N-terminus CU052_01475 PF02779 Transketolase, pyrimidine binding domain CU052_01475 PF00676 Dehydrogenase E1 component CU052_01480 PF13085 2Fe-2S iron-sulfur cluster binding domain CU052_01485 PF00890 FAD binding domain CU052_01485 PF02910 Fumarate reductase flavoprotein C-term CU052_01490 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CU052_01495 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CU052_01500 PF00285 Citrate synthase, C-terminal domain CU052_01505 PF01784 NIF3 (NGG1p interacting factor 3) CU052_01520 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CU052_01520 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CU052_01520 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CU052_01520 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CU052_01530 PF00561 alpha/beta hydrolase fold CU052_01540 PF00258 Flavodoxin CU052_01550 PF01475 Ferric uptake regulator family CU052_01560 PF00749 tRNA synthetases class I (E and Q), catalytic domain CU052_01560 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CU052_01565 PF02378 Phosphotransferase system, EIIC CU052_01565 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CU052_01565 PF00367 phosphotransferase system, EIIB CU052_01575 PF01979 Amidohydrolase family CU052_01580 PF01047 MarR family CU052_01580 PF00480 ROK family CU052_01585 PF02254 TrkA-N domain CU052_01585 PF00999 Sodium/hydrogen exchanger family CU052_01590 PF00733 Asparagine synthase CU052_01590 PF13537 Glutamine amidotransferase domain CU052_01595 PF02357 Transcription termination factor nusG CU052_01605 PF00854 POT family CU052_01610 PF00762 Ferrochelatase CU052_01615 PF05191 Adenylate kinase, active site lid CU052_01620 PF00183 Hsp90 protein CU052_01620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_01625 PF00486 Transcriptional regulatory protein, C terminal CU052_01630 PF17323 Trans-membrane regulatory protein ToxS CU052_01645 PF12850 Calcineurin-like phosphoesterase superfamily domain CU052_01665 PF07556 Protein of unknown function (DUF1538) CU052_01670 PF07556 Protein of unknown function (DUF1538) CU052_01675 PF08338 Domain of unknown function (DUF1731) CU052_01675 PF01370 NAD dependent epimerase/dehydratase family CU052_01680 PF00106 short chain dehydrogenase CU052_01690 PF00085 Thioredoxin CU052_01695 PF16200 C-terminal region of band_7 CU052_01695 PF01145 SPFH domain / Band 7 family CU052_01730 PF01653 NAD-dependent DNA ligase adenylation domain CU052_01730 PF03120 NAD-dependent DNA ligase OB-fold domain CU052_01730 PF00533 BRCA1 C Terminus (BRCT) domain CU052_01730 PF12826 Helix-hairpin-helix motif CU052_01730 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CU052_01735 PF04354 ZipA, C-terminal FtsZ-binding domain CU052_01745 PF00291 Pyridoxal-phosphate dependent enzyme CU052_01755 PF00381 PTS HPr component phosphorylation site CU052_01760 PF02896 PEP-utilising enzyme, TIM barrel domain CU052_01760 PF00391 PEP-utilising enzyme, mobile domain CU052_01760 PF05524 PEP-utilising enzyme, N-terminal CU052_01765 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CU052_01770 PF07196 Flagellin hook IN motif CU052_01770 PF00700 Bacterial flagellin C-terminal helical region CU052_01770 PF00669 Bacterial flagellin N-terminal helical region CU052_01775 PF07196 Flagellin hook IN motif CU052_01775 PF00669 Bacterial flagellin N-terminal helical region CU052_01775 PF00700 Bacterial flagellin C-terminal helical region CU052_01780 PF00700 Bacterial flagellin C-terminal helical region CU052_01780 PF00669 Bacterial flagellin N-terminal helical region CU052_01780 PF07196 Flagellin hook IN motif CU052_01790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CU052_01790 PF07196 Flagellin hook IN motif CU052_01795 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CU052_01795 PF10135 Rod binding protein CU052_01800 PF02119 Flagellar P-ring protein CU052_01805 PF02107 Flagellar L-ring protein CU052_01810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CU052_01810 PF00460 Flagella basal body rod protein CU052_01815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CU052_01815 PF00460 Flagella basal body rod protein CU052_01825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CU052_01825 PF00460 Flagella basal body rod protein CU052_01825 PF07559 Flagellar basal body protein FlaE CU052_01830 PF03963 Flagellar hook capping protein - N-terminal region CU052_01830 PF13860 FlgD Ig-like domain CU052_01830 PF13861 FlgD Tudor-like domain CU052_01835 PF00460 Flagella basal body rod protein CU052_01835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CU052_01840 PF00460 Flagella basal body rod protein CU052_01845 PF01739 CheR methyltransferase, SAM binding domain CU052_01845 PF03705 CheR methyltransferase, all-alpha domain CU052_01850 PF00072 Response regulator receiver domain CU052_01850 PF01584 CheW-like domain CU052_01895 PF00691 OmpA family CU052_01895 PF01389 OmpA-like transmembrane domain CU052_01900 PF00749 tRNA synthetases class I (E and Q), catalytic domain CU052_01905 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CU052_01910 PF13609 Gram-negative porin CU052_01920 PF00403 Heavy-metal-associated domain CU052_01935 PF02838 Glycosyl hydrolase family 20, domain 2 CU052_01935 PF00728 Glycosyl hydrolase family 20, catalytic domain CU052_01935 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CU052_01935 PF03173 Putative carbohydrate binding domain CU052_01965 PF01713 Smr domain CU052_01970 PF00849 RNA pseudouridylate synthase CU052_01970 PF01479 S4 domain CU052_01975 PF04073 Aminoacyl-tRNA editing domain CU052_01980 PF02872 5'-nucleotidase, C-terminal domain CU052_01980 PF00149 Calcineurin-like phosphoesterase CU052_01985 PF00793 DAHP synthetase I family CU052_01990 PF13369 Transglutaminase-like superfamily CU052_01995 PF04247 Invasion gene expression up-regulator, SirB CU052_02000 PF13847 Methyltransferase domain CU052_02000 PF17827 PrmC N-terminal domain CU052_02005 PF00472 RF-1 domain CU052_02005 PF03462 PCRF domain CU052_02010 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CU052_02010 PF01488 Shikimate / quinate 5-dehydrogenase CU052_02010 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CU052_02015 PF03550 Outer membrane lipoprotein LolB CU052_02020 PF08544 GHMP kinases C terminal CU052_02020 PF00288 GHMP kinases N terminal domain CU052_02025 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CU052_02025 PF14572 Phosphoribosyl synthetase-associated domain CU052_02030 PF01195 Peptidyl-tRNA hydrolase CU052_02035 PF01926 50S ribosome-binding GTPase CU052_02035 PF06071 Protein of unknown function (DUF933) CU052_02140 PF01494 FAD binding domain CU052_02150 PF00919 Uncharacterized protein family UPF0004 CU052_02150 PF01938 TRAM domain CU052_02150 PF04055 Radical SAM superfamily CU052_02155 PF02562 PhoH-like protein CU052_02160 PF02130 Uncharacterized protein family UPF0054 CU052_02165 PF03471 Transporter associated domain CU052_02165 PF00571 CBS domain CU052_02170 PF00795 Carbon-nitrogen hydrolase CU052_02175 PF07295 Zinc-ribbon containing domain CU052_02180 PF13603 Leucyl-tRNA synthetase, Domain 2 CU052_02180 PF08264 Anticodon-binding domain of tRNA CU052_02180 PF00133 tRNA synthetases class I (I, L, M and V) CU052_02185 PF04390 Lipopolysaccharide-assembly CU052_02190 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CU052_02190 PF06144 DNA polymerase III, delta subunit CU052_02200 PF02590 Predicted SPOUT methyltransferase CU052_02205 PF03717 Penicillin-binding Protein dimerisation domain CU052_02205 PF00905 Penicillin binding protein transpeptidase domain CU052_02210 PF01098 Cell cycle protein CU052_02215 PF05036 Sporulation related domain CU052_02215 PF03330 Lytic transglycolase CU052_02220 PF00768 D-alanyl-D-alanine carboxypeptidase CU052_02220 PF07943 Penicillin-binding protein 5, C-terminal domain CU052_02225 PF04359 Protein of unknown function (DUF493) CU052_02230 PF03099 Biotin/lipoate A/B protein ligase family CU052_02235 PF04055 Radical SAM superfamily CU052_02235 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CU052_02240 PF00464 Serine hydroxymethyltransferase CU052_02245 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CU052_02245 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CU052_02260 PF00128 Alpha amylase, catalytic domain CU052_02260 PF16657 Maltogenic Amylase, C-terminal domain CU052_02265 PF00367 phosphotransferase system, EIIB CU052_02265 PF02378 Phosphotransferase system, EIIC CU052_02270 PF00356 Bacterial regulatory proteins, lacI family CU052_02280 PF09383 NIL domain CU052_02280 PF00005 ABC transporter CU052_02285 PF00528 Binding-protein-dependent transport system inner membrane component CU052_02290 PF03180 NLPA lipoprotein CU052_02300 PF02872 5'-nucleotidase, C-terminal domain CU052_02300 PF00149 Calcineurin-like phosphoesterase CU052_02305 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) CU052_02310 PF07348 Syd protein (SUKH-2) CU052_02315 PF14489 QueF-like protein CU052_02315 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CU052_02325 PF00990 Diguanylate cyclase, GGDEF domain CU052_02330 PF03641 Possible lysine decarboxylase CU052_02330 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CU052_02330 PF11892 Domain of unknown function (DUF3412) CU052_02335 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CU052_02335 PF01367 5'-3' exonuclease, C-terminal SAM fold CU052_02340 PF01223 DNA/RNA non-specific endonuclease CU052_02345 PF18125 RlmM ferredoxin-like domain CU052_02345 PF01728 FtsJ-like methyltransferase CU052_02350 PF04241 Protein of unknown function (DUF423) CU052_02360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_02360 PF03466 LysR substrate binding domain CU052_02365 PF02926 THUMP domain CU052_02365 PF02568 Thiamine biosynthesis protein (ThiI) CU052_02370 PF00691 OmpA family CU052_02370 PF13677 Membrane MotB of proton-channel complex MotA/MotB CU052_02370 PF00691 OmpA family CU052_02370 PF13677 Membrane MotB of proton-channel complex MotA/MotB CU052_02375 PF01618 MotA/TolQ/ExbB proton channel family CU052_02380 PF02609 Exonuclease VII small subunit CU052_02385 PF00348 Polyprenyl synthetase CU052_02390 PF02779 Transketolase, pyrimidine binding domain CU052_02390 PF02780 Transketolase, C-terminal domain CU052_02390 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CU052_02395 PF04608 Phosphatidylglycerophosphatase A CU052_02400 PF02769 AIR synthase related protein, C-terminal domain CU052_02400 PF00586 AIR synthase related protein, N-terminal domain CU052_02405 PF01029 NusB family CU052_02410 PF00885 6,7-dimethyl-8-ribityllumazine synthase CU052_02415 PF00925 GTP cyclohydrolase II CU052_02415 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CU052_02420 PF00677 Lumazine binding domain CU052_02425 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CU052_02425 PF01872 RibD C-terminal domain CU052_02430 PF03477 ATP cone domain CU052_02435 PF00171 Aldehyde dehydrogenase family CU052_02440 PF00696 Amino acid kinase family CU052_02440 PF01472 PUA domain CU052_02445 PF07417 Sigma factor-binding transcriptional regulator Crl CU052_02455 PF00156 Phosphoribosyl transferase domain CU052_02460 PF00860 Permease family CU052_02465 PF01546 Peptidase family M20/M25/M40 CU052_02465 PF07687 Peptidase dimerisation domain CU052_02480 PF07715 TonB-dependent Receptor Plug Domain CU052_02480 PF00593 TonB dependent receptor CU052_02495 PF02769 AIR synthase related protein, C-terminal domain CU052_02495 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CU052_02495 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CU052_02500 PF00497 Bacterial extracellular solute-binding proteins, family 3 CU052_02500 PF01464 Transglycosylase SLT domain CU052_02510 PF14437 MafB19-like deaminase CU052_02515 PF03806 AbgT putative transporter family CU052_02540 PF07963 Prokaryotic N-terminal methylation motif CU052_02540 PF00114 Pilin (bacterial filament) CU052_02545 PF00114 Pilin (bacterial filament) CU052_02545 PF07963 Prokaryotic N-terminal methylation motif CU052_02550 PF00684 DnaJ central domain CU052_02550 PF01556 DnaJ C terminal domain CU052_02550 PF00226 DnaJ domain CU052_02555 PF00012 Hsp70 protein CU052_02565 PF00375 Sodium:dicarboxylate symporter family CU052_02570 PF01025 GrpE CU052_02575 PF01513 ATP-NAD kinase CU052_02585 PF02463 RecF/RecN/SMC N terminal domain CU052_02590 PF04355 SmpA / OmlA family CU052_02595 PF03658 RnfH family Ubiquitin CU052_02600 PF03364 Polyketide cyclase / dehydrase and lipid transport CU052_02605 PF01668 SmpB protein CU052_02615 PF13356 Arm DNA-binding domain CU052_02615 PF00589 Phage integrase family CU052_02655 PF04002 RadC-like JAB domain CU052_02675 PF12852 Cupin CU052_02675 PF12833 Helix-turn-helix domain CU052_02680 PF00462 Glutaredoxin CU052_02695 PF04055 Radical SAM superfamily CU052_02695 PF06463 Molybdenum Cofactor Synthesis C CU052_02700 PF00535 Glycosyl transferase family 2 CU052_02700 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 CU052_02720 PF01636 Phosphotransferase enzyme family CU052_02730 PF13737 Transposase DDE domain CU052_02745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_02745 PF00672 HAMP domain CU052_02745 PF12729 Four helix bundle sensory module for signal transduction CU052_02750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_02750 PF03466 LysR substrate binding domain CU052_02755 PF12805 FUSC-like inner membrane protein yccS CU052_02775 PF00202 Aminotransferase class-III CU052_02785 PF02657 Fe-S metabolism associated domain CU052_02790 PF00266 Aminotransferase class-V CU052_02795 PF01458 Uncharacterized protein family (UPF0051) CU052_02800 PF00005 ABC transporter CU052_02805 PF01458 Uncharacterized protein family (UPF0051) CU052_02810 PF01521 Iron-sulphur cluster biosynthesis CU052_02815 PF01053 Cys/Met metabolism PLP-dependent enzyme CU052_02820 PF00924 Mechanosensitive ion channel CU052_02825 PF03466 LysR substrate binding domain CU052_02825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_02830 PF01266 FAD dependent oxidoreductase CU052_02835 PF01235 Sodium:alanine symporter family CU052_02840 PF01184 GPR1/FUN34/yaaH family CU052_02845 PF06483 Chitinase C CU052_02845 PF00704 Glycosyl hydrolases family 18 CU052_02850 PF03553 Na+/H+ antiporter family CU052_02855 PF00117 Glutamine amidotransferase class-I CU052_02855 PF02540 NAD synthase CU052_02855 PF00958 GMP synthase C terminal domain CU052_02860 PF00571 CBS domain CU052_02860 PF00478 IMP dehydrogenase / GMP reductase domain CU052_02865 PF13742 OB-fold nucleic acid binding domain CU052_02865 PF02601 Exonuclease VII, large subunit CU052_02875 PF00990 Diguanylate cyclase, GGDEF domain CU052_02875 PF13185 GAF domain CU052_02885 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CU052_02885 PF01926 50S ribosome-binding GTPase CU052_02890 PF13360 PQQ-like domain CU052_02895 PF09976 Tetratricopeptide repeat-like domain CU052_02900 PF03129 Anticodon binding domain CU052_02900 PF13393 Histidyl-tRNA synthetase CU052_02905 PF04551 GcpE protein CU052_02910 PF13464 Domain of unknown function (DUF4115) CU052_02915 PF04055 Radical SAM superfamily CU052_02920 PF00334 Nucleoside diphosphate kinase CU052_02925 PF12404 Peptidase CU052_02925 PF00883 Cytosol aminopeptidase family, catalytic domain CU052_02930 PF04384 Iron-sulphur cluster assembly CU052_02935 PF00111 2Fe-2S iron-sulfur cluster binding domain CU052_02940 PF00012 Hsp70 protein CU052_02945 PF07743 HSCB C-terminal oligomerisation domain CU052_02945 PF00226 DnaJ domain CU052_02950 PF01521 Iron-sulphur cluster biosynthesis CU052_02955 PF01592 NifU-like N terminal domain CU052_02960 PF00266 Aminotransferase class-V CU052_02965 PF02082 Transcriptional regulator CU052_02970 PF00588 SpoU rRNA Methylase family CU052_02975 PF00459 Inositol monophosphatase family CU052_02990 PF02355 Protein export membrane protein CU052_02990 PF07549 SecD/SecF GG Motif CU052_02995 PF02355 Protein export membrane protein CU052_02995 PF13721 SecD export protein N-terminal TM region CU052_02995 PF07549 SecD/SecF GG Motif CU052_03000 PF02699 Preprotein translocase subunit CU052_03005 PF01702 Queuine tRNA-ribosyltransferase CU052_03010 PF02547 Queuosine biosynthesis protein CU052_03025 PF00571 CBS domain CU052_03030 PF00463 Isocitrate lyase family CU052_03035 PF01274 Malate synthase CU052_03040 PF03466 LysR substrate binding domain CU052_03040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_03045 PF00578 AhpC/TSA family CU052_03045 PF10417 C-terminal domain of 1-Cys peroxiredoxin CU052_03050 PF03932 CutC family CU052_03055 PF03976 Polyphosphate kinase 2 (PPK2) CU052_03060 PF03466 LysR substrate binding domain CU052_03060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_03075 PF01895 PhoU domain CU052_03080 PF00005 ABC transporter CU052_03085 PF00528 Binding-protein-dependent transport system inner membrane component CU052_03090 PF00528 Binding-protein-dependent transport system inner membrane component CU052_03095 PF13090 Polyphosphate kinase C-terminal domain 2 CU052_03095 PF17941 Polyphosphate kinase C-terminal domain 1 CU052_03095 PF02503 Polyphosphate kinase middle domain CU052_03095 PF13089 Polyphosphate kinase N-terminal domain CU052_03100 PF02541 Ppx/GppA phosphatase family CU052_03105 PF12849 PBP superfamily domain CU052_03110 PF11808 Phosphate regulon sensor protein PhoR CU052_03110 PF00989 PAS fold CU052_03110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_03110 PF00512 His Kinase A (phospho-acceptor) domain CU052_03115 PF00486 Transcriptional regulatory protein, C terminal CU052_03115 PF00072 Response regulator receiver domain CU052_03120 PF04381 Putative exonuclease, RdgC CU052_03130 PF00037 4Fe-4S binding domain CU052_03140 PF03411 Penicillin-insensitive murein endopeptidase CU052_03200 PF02861 Clp amino terminal domain, pathogenicity island component CU052_03200 PF10431 C-terminal, D2-small domain, of ClpB protein CU052_03200 PF07724 AAA domain (Cdc48 subfamily) CU052_03200 PF00004 ATPase family associated with various cellular activities (AAA) CU052_03200 PF17871 AAA lid domain CU052_03210 PF00849 RNA pseudouridylate synthase CU052_03210 PF01479 S4 domain CU052_03215 PF13525 Outer membrane lipoprotein CU052_03220 PF01464 Transglycosylase SLT domain CU052_03225 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CU052_03230 PF00800 Prephenate dehydratase CU052_03230 PF01817 Chorismate mutase type II CU052_03235 PF01931 Protein of unknown function DUF84 CU052_03240 PF01371 Trp repressor protein CU052_03245 PF14718 Soluble lytic murein transglycosylase L domain CU052_03245 PF01464 Transglycosylase SLT domain CU052_03250 PF12848 ABC transporter CU052_03250 PF00005 ABC transporter CU052_03255 PF07238 PilZ domain CU052_03260 PF04225 Opacity-associated protein A LysM-like domain CU052_03260 PF01551 Peptidase family M23 CU052_03265 PF02153 Prephenate dehydrogenase CU052_03265 PF01817 Chorismate mutase type II CU052_03270 PF00793 DAHP synthetase I family CU052_03275 PF00933 Glycosyl hydrolase family 3 N terminal domain CU052_03280 PF03702 Anhydro-N-acetylmuramic acid kinase CU052_03295 PF01380 SIS domain CU052_03310 PF02554 Carbon starvation protein CstA CU052_03315 PF06580 Histidine kinase CU052_03315 PF07694 5TMR of 5TMR-LYT CU052_03320 PF04397 LytTr DNA-binding domain CU052_03320 PF00072 Response regulator receiver domain CU052_03325 PF02401 LytB protein CU052_03330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CU052_03335 PF01252 Signal peptidase (SPase) II CU052_03340 PF08264 Anticodon-binding domain of tRNA CU052_03340 PF06827 Zinc finger found in FPG and IleRS CU052_03340 PF00133 tRNA synthetases class I (I, L, M and V) CU052_03345 PF01687 Riboflavin kinase CU052_03345 PF06574 FAD synthetase CU052_03350 PF03023 Lipid II flippase MurJ CU052_03355 PF01649 Ribosomal protein S20 CU052_03360 PF01022 Bacterial regulatory protein, arsR family CU052_03365 PF03466 LysR substrate binding domain CU052_03365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_03370 PF02690 Na+/Pi-cotransporter CU052_03375 PF00303 Thymidylate synthase CU052_03380 PF01790 Prolipoprotein diacylglyceryl transferase CU052_03385 PF01925 Sulfite exporter TauE/SafE CU052_03390 PF05524 PEP-utilising enzyme, N-terminal CU052_03390 PF02896 PEP-utilising enzyme, TIM barrel domain CU052_03390 PF00391 PEP-utilising enzyme, mobile domain CU052_03390 PF01590 GAF domain CU052_03395 PF00293 NUDIX domain CU052_03400 PF02976 DNA mismatch repair enzyme MutH CU052_03410 PF00248 Aldo/keto reductase family CU052_03420 PF02954 Bacterial regulatory protein, Fis family CU052_03420 PF00072 Response regulator receiver domain CU052_03420 PF00158 Sigma-54 interaction domain CU052_03425 PF00152 tRNA synthetases class II (D, K and N) CU052_03425 PF01336 OB-fold nucleic acid binding domain CU052_03435 PF01368 DHH family CU052_03435 PF02272 DHHA1 domain CU052_03435 PF17768 RecJ OB domain CU052_03440 PF13098 Thioredoxin-like domain CU052_03440 PF10411 Disulfide bond isomerase protein N-terminus CU052_03445 PF00589 Phage integrase family CU052_03445 PF02899 Phage integrase, N-terminal SAM-like domain CU052_03450 PF00258 Flavodoxin CU052_03455 PF05525 Branched-chain amino acid transport protein CU052_03460 PF05175 Methyltransferase small domain CU052_03465 PF00270 DEAD/DEAH box helicase CU052_03465 PF00271 Helicase conserved C-terminal domain CU052_03475 PF03883 Peroxide stress protein YaaA CU052_03480 PF01235 Sodium:alanine symporter family CU052_03495 PF03167 Uracil DNA glycosylase superfamily CU052_03505 PF01261 Xylose isomerase-like TIM barrel CU052_03510 PF01228 Glycine radical CU052_03515 PF03358 NADPH-dependent FMN reductase CU052_03520 PF00291 Pyridoxal-phosphate dependent enzyme CU052_03520 PF14821 Threonine synthase N terminus CU052_03525 PF00288 GHMP kinases N terminal domain CU052_03525 PF08544 GHMP kinases C terminal CU052_03530 PF00742 Homoserine dehydrogenase CU052_03530 PF03447 Homoserine dehydrogenase, NAD binding domain CU052_03530 PF00696 Amino acid kinase family CU052_03530 PF01842 ACT domain CU052_03530 PF13840 ACT domain CU052_03540 PF03737 Aldolase/RraA CU052_03555 PF00486 Transcriptional regulatory protein, C terminal CU052_03555 PF00072 Response regulator receiver domain CU052_03565 PF00072 Response regulator receiver domain CU052_03565 PF00989 PAS fold CU052_03565 PF01627 Hpt domain CU052_03565 PF18415 Histidine kinase receptor ArcB trans-membrane domain CU052_03565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_03565 PF00512 His Kinase A (phospho-acceptor) domain CU052_03575 PF00990 Diguanylate cyclase, GGDEF domain CU052_03575 PF01590 GAF domain CU052_03575 PF00360 Phytochrome region CU052_03575 PF00563 EAL domain CU052_03595 PF01493 GXGXG motif CU052_03595 PF01645 Conserved region in glutamate synthase CU052_03595 PF04898 Glutamate synthase central domain CU052_03595 PF00310 Glutamine amidotransferases class-II CU052_03600 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CU052_03600 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_03605 PF01645 Conserved region in glutamate synthase CU052_03605 PF04898 Glutamate synthase central domain CU052_03605 PF00310 Glutamine amidotransferases class-II CU052_03605 PF01493 GXGXG motif CU052_03610 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_03610 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CU052_03620 PF01048 Phosphorylase superfamily CU052_03630 PF01497 Periplasmic binding protein CU052_03635 PF03458 UPF0126 domain CU052_03640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_03640 PF03466 LysR substrate binding domain CU052_03645 PF01925 Sulfite exporter TauE/SafE CU052_03665 PF02142 MGS-like domain CU052_03665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CU052_03665 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CU052_03670 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CU052_03670 PF00117 Glutamine amidotransferase class-I CU052_03675 PF01113 Dihydrodipicolinate reductase, N-terminus CU052_03675 PF05173 Dihydrodipicolinate reductase, C-terminus CU052_03680 PF00293 NUDIX domain CU052_03685 PF07516 SecA Wing and Scaffold domain CU052_03685 PF01043 SecA preprotein cross-linking domain CU052_03685 PF07517 SecA DEAD-like domain CU052_03685 PF02810 SEC-C motif CU052_03690 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CU052_03695 PF12327 FtsZ family, C-terminal domain CU052_03695 PF00091 Tubulin/FtsZ family, GTPase domain CU052_03700 PF02491 SHS2 domain inserted in FTSA CU052_03705 PF08478 POTRA domain, FtsQ-type CU052_03705 PF03799 Cell division protein FtsQ CU052_03710 PF08245 Mur ligase middle domain CU052_03710 PF02875 Mur ligase family, glutamate ligase domain CU052_03710 PF01225 Mur ligase family, catalytic domain CU052_03715 PF03033 Glycosyltransferase family 28 N-terminal domain CU052_03715 PF04101 Glycosyltransferase family 28 C-terminal domain CU052_03720 PF01098 Cell cycle protein CU052_03725 PF08245 Mur ligase middle domain CU052_03725 PF02875 Mur ligase family, glutamate ligase domain CU052_03730 PF00953 Glycosyl transferase family 4 CU052_03730 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CU052_03735 PF02875 Mur ligase family, glutamate ligase domain CU052_03735 PF01225 Mur ligase family, catalytic domain CU052_03735 PF08245 Mur ligase middle domain CU052_03740 PF02875 Mur ligase family, glutamate ligase domain CU052_03740 PF08245 Mur ligase middle domain CU052_03740 PF01225 Mur ligase family, catalytic domain CU052_03745 PF00905 Penicillin binding protein transpeptidase domain CU052_03745 PF03717 Penicillin-binding Protein dimerisation domain CU052_03750 PF04999 Cell division protein FtsL CU052_03755 PF01795 MraW methylase family CU052_03770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CU052_03775 PF04348 LppC putative lipoprotein CU052_03780 PF02021 Uncharacterised protein family UPF0102 CU052_03785 PF13580 SIS domain CU052_03790 PF04972 BON domain CU052_03795 PF04386 Stringent starvation protein B CU052_03800 PF00043 Glutathione S-transferase, C-terminal domain CU052_03800 PF02798 Glutathione S-transferase, N-terminal domain CU052_03805 PF02167 Cytochrome C1 family CU052_03810 PF00033 Cytochrome b/b6/petB CU052_03810 PF00032 Cytochrome b(C-terminal)/b6/petD CU052_03815 PF00355 Rieske [2Fe-2S] domain CU052_03815 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CU052_03820 PF00380 Ribosomal protein S9/S16 CU052_03825 PF00572 Ribosomal protein L13 CU052_03835 PF03969 AFG1-like ATPase CU052_03845 PF06295 Protein of unknown function (DUF1043) CU052_03855 PF00595 PDZ domain CU052_03860 PF13180 PDZ domain CU052_03865 PF00521 DNA gyrase/topoisomerase IV, subunit A CU052_03865 PF03989 DNA gyrase C-terminal domain, beta-propeller CU052_03870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_03870 PF00204 DNA gyrase B CU052_03870 PF01751 Toprim domain CU052_03870 PF00986 DNA gyrase B subunit, carboxyl terminus CU052_03875 PF05728 Uncharacterised protein family (UPF0227) CU052_03880 PF00149 Calcineurin-like phosphoesterase CU052_03885 PF06853 Protein of unknown function (DUF1249) CU052_03890 PF00293 NUDIX domain CU052_03895 PF02321 Outer membrane efflux protein CU052_03900 PF01467 Cytidylyltransferase-like CU052_03900 PF00294 pfkB family carbohydrate kinase CU052_03905 PF03710 Glutamate-ammonia ligase adenylyltransferase CU052_03905 PF08335 GlnD PII-uridylyltransferase CU052_03910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_03910 PF00672 HAMP domain CU052_03910 PF02743 Cache domain CU052_03915 PF07885 Ion channel CU052_03920 PF01928 CYTH domain CU052_03925 PF01865 Protein of unknown function DUF47 CU052_03930 PF01384 Phosphate transporter family CU052_03935 PF08239 Bacterial SH3 domain CU052_03945 PF13401 AAA domain CU052_03945 PF01471 Putative peptidoglycan binding domain CU052_03950 PF01966 HD domain CU052_03950 PF01743 Poly A polymerase head domain CU052_03950 PF12627 Probable RNA and SrmB- binding site of polymerase A CU052_03955 PF02673 Bacitracin resistance protein BacA CU052_03960 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CU052_03965 PF02152 Dihydroneopterin aldolase CU052_03970 PF02660 Glycerol-3-phosphate acyltransferase CU052_03975 PF00561 alpha/beta hydrolase fold CU052_03980 PF00814 Glycoprotease family CU052_03985 PF01165 Ribosomal protein S21 CU052_03990 PF09424 Yqey-like protein CU052_03995 PF08275 DNA primase catalytic core, N-terminal domain CU052_03995 PF08278 DNA primase DnaG DnaB-binding CU052_03995 PF10410 DnaB-helicase binding domain of primase CU052_03995 PF01807 CHC2 zinc finger CU052_04000 PF00140 Sigma-70 factor, region 1.2 CU052_04000 PF04546 Sigma-70, non-essential region CU052_04000 PF04539 Sigma-70 region 3 CU052_04000 PF03979 Sigma-70 factor, region 1.1 CU052_04000 PF04545 Sigma-70, region 4 CU052_04000 PF04542 Sigma-70 region 2 CU052_04030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CU052_04030 PF02378 Phosphotransferase system, EIIC CU052_04030 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CU052_04035 PF08125 Mannitol dehydrogenase C-terminal domain CU052_04035 PF01232 Mannitol dehydrogenase Rossmann domain CU052_04040 PF05068 Mannitol repressor CU052_04045 PF13419 Haloacid dehalogenase-like hydrolase CU052_04050 PF00672 HAMP domain CU052_04050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_04050 PF00512 His Kinase A (phospho-acceptor) domain CU052_04055 PF00486 Transcriptional regulatory protein, C terminal CU052_04055 PF00072 Response regulator receiver domain CU052_04070 PF01380 SIS domain CU052_04075 PF08220 DeoR-like helix-turn-helix domain CU052_04075 PF00455 DeoR C terminal sensor domain CU052_04085 PF00224 Pyruvate kinase, barrel domain CU052_04085 PF02887 Pyruvate kinase, alpha/beta domain CU052_04100 PF10369 Small subunit of acetolactate synthase CU052_04105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CU052_04105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CU052_04105 PF00205 Thiamine pyrophosphate enzyme, central domain CU052_04110 PF00501 AMP-binding enzyme CU052_04115 PF03466 LysR substrate binding domain CU052_04115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_04125 PF01569 PAP2 superfamily CU052_04140 PF08502 LeuA allosteric (dimerisation) domain CU052_04140 PF00682 HMGL-like CU052_04145 PF00180 Isocitrate/isopropylmalate dehydrogenase CU052_04150 PF00330 Aconitase family (aconitate hydratase) CU052_04155 PF00694 Aconitase C-terminal domain CU052_04165 PF00226 DnaJ domain CU052_04165 PF05099 Tellurite resistance protein TerB CU052_04170 PF04453 LPS transport system D CU052_04170 PF03968 OstA-like protein CU052_04175 PF09312 SurA N-terminal domain CU052_04180 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CU052_04185 PF00398 Ribosomal RNA adenine dimethylase CU052_04190 PF04379 ApaG domain CU052_04195 PF00149 Calcineurin-like phosphoesterase CU052_04200 PF00186 Dihydrofolate reductase CU052_04205 PF12821 Threonine/Serine exporter, ThrE CU052_04210 PF06738 Putative threonine/serine exporter CU052_04215 PF01018 GTP1/OBG CU052_04215 PF01926 50S ribosome-binding GTPase CU052_04220 PF01016 Ribosomal L27 protein CU052_04225 PF00829 Ribosomal prokaryotic L21 protein CU052_04230 PF00348 Polyprenyl synthetase CU052_04240 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CU052_04240 PF00056 lactate/malate dehydrogenase, NAD binding domain CU052_04245 PF01316 Arginine repressor, DNA binding domain CU052_04245 PF02863 Arginine repressor, C-terminal domain CU052_04270 PF00005 ABC transporter CU052_04275 PF00528 Binding-protein-dependent transport system inner membrane component CU052_04285 PF02441 Flavoprotein CU052_04290 PF02875 Mur ligase family, glutamate ligase domain CU052_04290 PF08245 Mur ligase middle domain CU052_04290 PF01225 Mur ligase family, catalytic domain CU052_04295 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CU052_04300 PF00719 Inorganic pyrophosphatase CU052_04310 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CU052_04315 PF04357 TamB, inner membrane protein subunit of TAM complex CU052_04320 PF17243 POTRA domain TamA domain 1 CU052_04320 PF07244 Surface antigen variable number repeat CU052_04320 PF01103 Surface antigen CU052_04325 PF01625 Peptide methionine sulfoxide reductase CU052_04335 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CU052_04340 PF10795 Protein of unknown function (DUF2607) CU052_04350 PF00005 ABC transporter CU052_04375 PF03600 Citrate transporter CU052_04375 PF02080 TrkA-C domain CU052_04380 PF00009 Elongation factor Tu GTP binding domain CU052_04385 PF01507 Phosphoadenosine phosphosulfate reductase family CU052_04390 PF14824 Sirohaem biosynthesis protein central CU052_04390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CU052_04390 PF10414 Sirohaem synthase dimerisation region CU052_04395 PF00149 Calcineurin-like phosphoesterase CU052_04395 PF02872 5'-nucleotidase, C-terminal domain CU052_04405 PF03880 DbpA RNA binding domain CU052_04405 PF00270 DEAD/DEAH box helicase CU052_04405 PF00271 Helicase conserved C-terminal domain CU052_04410 PF13673 Acetyltransferase (GNAT) domain CU052_04425 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CU052_04425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CU052_04435 PF01196 Ribosomal protein L17 CU052_04440 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CU052_04440 PF01000 RNA polymerase Rpb3/RpoA insert domain CU052_04440 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CU052_04445 PF01479 S4 domain CU052_04445 PF00163 Ribosomal protein S4/S9 N-terminal domain CU052_04450 PF00411 Ribosomal protein S11 CU052_04455 PF00416 Ribosomal protein S13/S18 CU052_04460 PF00444 Ribosomal protein L36 CU052_04465 PF00344 SecY translocase CU052_04470 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CU052_04475 PF00327 Ribosomal protein L30p/L7e CU052_04480 PF03719 Ribosomal protein S5, C-terminal domain CU052_04480 PF00333 Ribosomal protein S5, N-terminal domain CU052_04485 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CU052_04490 PF00347 Ribosomal protein L6 CU052_04495 PF00410 Ribosomal protein S8 CU052_04500 PF00253 Ribosomal protein S14p/S29e CU052_04505 PF00281 Ribosomal protein L5 CU052_04505 PF00673 ribosomal L5P family C-terminus CU052_04510 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CU052_04510 PF00467 KOW motif CU052_04515 PF00238 Ribosomal protein L14p/L23e CU052_04520 PF00366 Ribosomal protein S17 CU052_04525 PF00831 Ribosomal L29 protein CU052_04530 PF00252 Ribosomal protein L16p/L10e CU052_04535 PF07650 KH domain CU052_04535 PF00189 Ribosomal protein S3, C-terminal domain CU052_04540 PF00237 Ribosomal protein L22p/L17e CU052_04545 PF00203 Ribosomal protein S19 CU052_04550 PF03947 Ribosomal Proteins L2, C-terminal domain CU052_04550 PF00181 Ribosomal Proteins L2, RNA binding domain CU052_04555 PF00276 Ribosomal protein L23 CU052_04560 PF00573 Ribosomal protein L4/L1 family CU052_04565 PF00297 Ribosomal protein L3 CU052_04570 PF00338 Ribosomal protein S10p/S20e CU052_04575 PF01197 Ribosomal protein L31 CU052_04585 PF18074 Primosomal protein N C-terminal domain CU052_04585 PF17764 3′ DNA-binding domain (3′BD) CU052_04585 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CU052_04585 PF00270 DEAD/DEAH box helicase CU052_04585 PF00271 Helicase conserved C-terminal domain CU052_04590 PF00356 Bacterial regulatory proteins, lacI family CU052_04600 PF00227 Proteasome subunit CU052_04605 PF00004 ATPase family associated with various cellular activities (AAA) CU052_04605 PF07724 AAA domain (Cdc48 subfamily) CU052_04615 PF04002 RadC-like JAB domain CU052_04650 PF01040 UbiA prenyltransferase family CU052_04655 PF03737 Aldolase/RraA CU052_04660 PF06005 Cell division protein ZapB CU052_04665 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CU052_04670 PF00455 DeoR C terminal sensor domain CU052_04670 PF08220 DeoR-like helix-turn-helix domain CU052_04695 PF00121 Triosephosphate isomerase CU052_04705 PF00483 Nucleotidyl transferase CU052_04710 PF01370 NAD dependent epimerase/dehydratase family CU052_04715 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CU052_04715 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CU052_04715 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CU052_04720 PF00953 Glycosyl transferase family 4 CU052_04760 PF03755 YicC-like family, N-terminal region CU052_04760 PF08340 Domain of unknown function (DUF1732) CU052_04765 PF03725 3' exoribonuclease family, domain 2 CU052_04765 PF01138 3' exoribonuclease family, domain 1 CU052_04775 PF03279 Bacterial lipid A biosynthesis acyltransferase CU052_04780 PF00440 Bacterial regulatory proteins, tetR family CU052_04785 PF04127 DNA / pantothenate metabolism flavoprotein CU052_04785 PF02441 Flavoprotein CU052_04795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_04795 PF17200 Single Cache domain 2 CU052_04795 PF00672 HAMP domain CU052_04800 PF04002 RadC-like JAB domain CU052_04805 PF00830 Ribosomal L28 family CU052_04810 PF00471 Ribosomal protein L33 CU052_04815 PF00884 Sulfatase CU052_04825 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CU052_04825 PF06827 Zinc finger found in FPG and IleRS CU052_04825 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CU052_04830 PF01467 Cytidylyltransferase-like CU052_04835 PF05686 Glycosyl transferase family 90 CU052_04840 PF00535 Glycosyl transferase family 2 CU052_04845 PF00535 Glycosyl transferase family 2 CU052_04850 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CU052_04855 PF01219 Prokaryotic diacylglycerol kinase CU052_04865 PF16363 GDP-mannose 4,6 dehydratase CU052_04900 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CU052_04905 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CU052_04910 PF03279 Bacterial lipid A biosynthesis acyltransferase CU052_04915 PF01370 NAD dependent epimerase/dehydratase family CU052_04920 PF06082 Exopolysaccharide biosynthesis protein YbjH CU052_04955 PF02348 Cytidylyltransferase CU052_04960 PF03102 NeuB family CU052_04960 PF08666 SAF domain CU052_04965 PF02350 UDP-N-acetylglucosamine 2-epimerase CU052_04985 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CU052_05030 PF00075 RNase H CU052_05060 PF00486 Transcriptional regulatory protein, C terminal CU052_05060 PF00072 Response regulator receiver domain CU052_05070 PF00892 EamA-like transporter family CU052_05085 PF00005 ABC transporter CU052_05085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_05090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_05090 PF00005 ABC transporter CU052_05095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CU052_05100 PF12911 N-terminal TM domain of oligopeptide transport permease C CU052_05100 PF00528 Binding-protein-dependent transport system inner membrane component CU052_05105 PF00528 Binding-protein-dependent transport system inner membrane component CU052_05115 PF00593 TonB dependent receptor CU052_05115 PF07715 TonB-dependent Receptor Plug Domain CU052_05130 PF01618 MotA/TolQ/ExbB proton channel family CU052_05135 PF02472 Biopolymer transport protein ExbD/TolR CU052_05150 PF00625 Guanylate kinase CU052_05155 PF01192 RNA polymerase Rpb6 CU052_05160 PF02824 TGS domain CU052_05160 PF04607 Region found in RelA / SpoT proteins CU052_05160 PF13291 ACT domain CU052_05165 PF00588 SpoU rRNA Methylase family CU052_05165 PF12105 SpoU, rRNA methylase, C-terminal CU052_05170 PF00270 DEAD/DEAH box helicase CU052_05170 PF00271 Helicase conserved C-terminal domain CU052_05170 PF17191 RecG wedge domain CU052_05175 PF00326 Prolyl oligopeptidase family CU052_05180 PF00860 Permease family CU052_05185 PF00512 His Kinase A (phospho-acceptor) domain CU052_05185 PF00672 HAMP domain CU052_05185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_05190 PF00486 Transcriptional regulatory protein, C terminal CU052_05190 PF00072 Response regulator receiver domain CU052_05195 PF01272 Transcription elongation factor, GreA/GreB, C-term CU052_05195 PF03449 Transcription elongation factor, N-terminal CU052_05205 PF16921 Tex protein YqgF-like domain CU052_05205 PF00575 S1 RNA binding domain CU052_05205 PF17674 HHH domain CU052_05205 PF09371 Tex-like protein N-terminal domain CU052_05215 PF00561 alpha/beta hydrolase fold CU052_05220 PF00156 Phosphoribosyl transferase domain CU052_05225 PF01521 Iron-sulphur cluster biosynthesis CU052_05225 PF01106 NifU-like domain CU052_05230 PF00293 NUDIX domain CU052_05235 PF00459 Inositol monophosphatase family CU052_05240 PF01203 Type II secretion system (T2SS), protein N CU052_05245 PF04612 Type II secretion system (T2SS), protein M CU052_05250 PF12693 GspL periplasmic domain CU052_05250 PF05134 Type II secretion system (T2SS), protein L CU052_05255 PF03934 Type II secretion system (T2SS), protein K CU052_05260 PF07963 Prokaryotic N-terminal methylation motif CU052_05260 PF11612 Type II secretion system (T2SS), protein J CU052_05265 PF07963 Prokaryotic N-terminal methylation motif CU052_05265 PF02501 Type II secretion system (T2SS), protein I CU052_05270 PF12019 Type II transport protein GspH CU052_05275 PF07963 Prokaryotic N-terminal methylation motif CU052_05275 PF08334 Type II secretion system (T2SS), protein G CU052_05280 PF00482 Type II secretion system (T2SS), protein F CU052_05285 PF00437 Type II/IV secretion system protein CU052_05290 PF00263 Bacterial type II and III secretion system protein CU052_05290 PF03958 Bacterial type II/III secretion system short domain CU052_05295 PF11356 Type II secretion system protein C CU052_05300 PF01479 S4 domain CU052_05305 PF01430 Hsp33 protein CU052_05310 PF01293 Phosphoenolpyruvate carboxykinase CU052_05320 PF00583 Acetyltransferase (GNAT) family CU052_05320 PF09500 Putative thioesterase (yiiD_Cterm) CU052_05325 PF02580 D-Tyr-tRNA(Tyr) deacylase CU052_05330 PF03631 Virulence factor BrkB CU052_05355 PF00120 Glutamine synthetase, catalytic domain CU052_05355 PF03951 Glutamine synthetase, beta-Grasp domain CU052_05365 PF00989 PAS fold CU052_05365 PF00512 His Kinase A (phospho-acceptor) domain CU052_05365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_05370 PF02954 Bacterial regulatory protein, Fis family CU052_05370 PF00072 Response regulator receiver domain CU052_05370 PF00158 Sigma-54 interaction domain CU052_05375 PF03707 Bacterial signalling protein N terminal repeat CU052_05375 PF00563 EAL domain CU052_05375 PF00990 Diguanylate cyclase, GGDEF domain CU052_05380 PF00962 Adenosine/AMP deaminase CU052_05385 PF04055 Radical SAM superfamily CU052_05385 PF06969 HemN C-terminal domain CU052_05395 PF04220 Der GTPase activator (YihI) CU052_05405 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CU052_05410 PF01926 50S ribosome-binding GTPase CU052_05420 PF01612 3'-5' exonuclease CU052_05420 PF00476 DNA polymerase family A CU052_05420 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CU052_05420 PF01367 5'-3' exonuclease, C-terminal SAM fold CU052_05435 PF00490 Delta-aminolevulinic acid dehydratase CU052_05440 PF01026 TatD related DNase CU052_05445 PF00902 Sec-independent protein translocase protein (TatC) CU052_05450 PF02416 mttA/Hcf106 family CU052_05455 PF02416 mttA/Hcf106 family CU052_05460 PF03109 ABC1 family CU052_05465 PF02036 SCP-2 sterol transfer family CU052_05470 PF01209 ubiE/COQ5 methyltransferase family CU052_05475 PF02646 RmuC family CU052_05485 PF03707 Bacterial signalling protein N terminal repeat CU052_05485 PF00990 Diguanylate cyclase, GGDEF domain CU052_05485 PF00563 EAL domain CU052_05490 PF00474 Sodium:solute symporter family CU052_05500 PF10625 Universal stress protein B (UspB) CU052_05505 PF00210 Ferritin-like domain CU052_05515 PF00582 Universal stress protein family CU052_05520 PF00892 EamA-like transporter family CU052_05535 PF04445 Putative SAM-dependent methyltransferase CU052_05540 PF00563 EAL domain CU052_05540 PF08448 PAS fold CU052_05540 PF00990 Diguanylate cyclase, GGDEF domain CU052_05545 PF01037 Lrp/AsnC ligand binding domain CU052_05550 PF01432 Peptidase family M3 CU052_05560 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CU052_05570 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CU052_05570 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_05585 PF06480 FtsH Extracellular CU052_05585 PF17862 AAA+ lid domain CU052_05585 PF00004 ATPase family associated with various cellular activities (AAA) CU052_05585 PF01434 Peptidase family M41 CU052_05605 PF01081 KDPG and KHG aldolase CU052_05610 PF02447 GntP family permease CU052_05615 PF01202 Shikimate kinase CU052_05620 PF00920 Dehydratase family CU052_05630 PF00893 Small Multidrug Resistance protein CU052_05635 PF00893 Small Multidrug Resistance protein CU052_05640 PF03466 LysR substrate binding domain CU052_05640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_05645 PF00356 Bacterial regulatory proteins, lacI family CU052_05645 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CU052_05650 PF00069 Protein kinase domain CU052_05680 PF12911 N-terminal TM domain of oligopeptide transport permease C CU052_05680 PF00528 Binding-protein-dependent transport system inner membrane component CU052_05690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CU052_05695 PF00005 ABC transporter CU052_05695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_05705 PF13419 Haloacid dehalogenase-like hydrolase CU052_05735 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CU052_05740 PF00580 UvrD/REP helicase N-terminal domain CU052_05740 PF13361 UvrD-like helicase C-terminal domain CU052_05745 PF08359 YsiA-like protein, C-terminal region CU052_05745 PF00440 Bacterial regulatory proteins, tetR family CU052_05750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_05755 PF00873 AcrB/AcrD/AcrF family CU052_05765 PF04380 Membrane fusogenic activity CU052_05770 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CU052_05770 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CU052_05775 PF03466 LysR substrate binding domain CU052_05775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_05825 PF12724 Flavodoxin domain CU052_05830 PF02386 Cation transport protein CU052_05835 PF09186 Domain of unknown function (DUF1949) CU052_05835 PF01205 Uncharacterized protein family UPF0029 CU052_05840 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CU052_05840 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CU052_05840 PF00378 Enoyl-CoA hydratase/isomerase CU052_05845 PF00108 Thiolase, N-terminal domain CU052_05845 PF02803 Thiolase, C-terminal domain CU052_05850 PF08240 Alcohol dehydrogenase GroES-like domain CU052_05850 PF00107 Zinc-binding dehydrogenase CU052_05865 PF01206 Sulfurtransferase TusA CU052_05875 PF01169 Uncharacterized protein family UPF0016 CU052_05880 PF02091 Glycyl-tRNA synthetase alpha subunit CU052_05885 PF05746 DALR anticodon binding domain CU052_05885 PF02092 Glycyl-tRNA synthetase beta subunit CU052_05890 PF00128 Alpha amylase, catalytic domain CU052_05895 PF00155 Aminotransferase class I and II CU052_05900 PF00011 Hsp20/alpha crystallin family CU052_05905 PF00204 DNA gyrase B CU052_05905 PF00986 DNA gyrase B subunit, carboxyl terminus CU052_05905 PF18053 DNA gyrase B subunit insert domain CU052_05905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_05905 PF01751 Toprim domain CU052_05910 PF02463 RecF/RecN/SMC N terminal domain CU052_05915 PF02768 DNA polymerase III beta subunit, C-terminal domain CU052_05915 PF00712 DNA polymerase III beta subunit, N-terminal domain CU052_05915 PF02767 DNA polymerase III beta subunit, central domain CU052_05920 PF08299 Bacterial dnaA protein helix-turn-helix CU052_05920 PF11638 DnaA N-terminal domain CU052_05920 PF00308 Bacterial dnaA protein CU052_05930 PF00497 Bacterial extracellular solute-binding proteins, family 3 CU052_05935 PF00528 Binding-protein-dependent transport system inner membrane component CU052_05940 PF00005 ABC transporter CU052_05945 PF00468 Ribosomal protein L34 CU052_05950 PF00825 Ribonuclease P CU052_05955 PF01809 Putative membrane protein insertion efficiency factor CU052_05960 PF02096 60Kd inner membrane protein CU052_05960 PF14849 YidC periplasmic domain CU052_05965 PF10396 GTP-binding protein TrmE N-terminus CU052_05965 PF12631 MnmE helical domain CU052_05965 PF01926 50S ribosome-binding GTPase CU052_05970 PF00258 Flavodoxin CU052_05975 PF13932 GidA associated domain CU052_05975 PF01134 Glucose inhibited division protein A CU052_05980 PF02527 rRNA small subunit methyltransferase G CU052_05985 PF13614 AAA domain CU052_05990 PF17762 HTH domain found in ParB protein CU052_05990 PF02195 ParB-like nuclease domain CU052_05995 PF03899 ATP synthase I chain CU052_06000 PF00119 ATP synthase A chain CU052_06005 PF00137 ATP synthase subunit C CU052_06010 PF00430 ATP synthase B/B' CF(0) CU052_06015 PF00213 ATP synthase delta (OSCP) subunit CU052_06020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CU052_06020 PF02874 ATP synthase alpha/beta family, beta-barrel domain CU052_06020 PF00306 ATP synthase alpha/beta chain, C terminal domain CU052_06025 PF00231 ATP synthase CU052_06030 PF02874 ATP synthase alpha/beta family, beta-barrel domain CU052_06030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CU052_06035 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CU052_06035 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CU052_06040 PF12804 MobA-like NTP transferase domain CU052_06040 PF00132 Bacterial transferase hexapeptide (six repeats) CU052_06045 PF00528 Binding-protein-dependent transport system inner membrane component CU052_06050 PF00497 Bacterial extracellular solute-binding proteins, family 3 CU052_06055 PF07690 Major Facilitator Superfamily CU052_06060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_06060 PF03466 LysR substrate binding domain CU052_06065 PF00585 C-terminal regulatory domain of Threonine dehydratase CU052_06065 PF00291 Pyridoxal-phosphate dependent enzyme CU052_06070 PF00920 Dehydratase family CU052_06075 PF01063 Amino-transferase class IV CU052_06085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CU052_06085 PF00205 Thiamine pyrophosphate enzyme, central domain CU052_06085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CU052_06095 PF01757 Acyltransferase family CU052_06110 PF01076 Plasmid recombination enzyme CU052_06125 PF02899 Phage integrase, N-terminal SAM-like domain CU052_06125 PF00589 Phage integrase family CU052_06170 PF00072 Response regulator receiver domain CU052_06170 PF08448 PAS fold CU052_06170 PF13188 PAS domain CU052_06170 PF00512 His Kinase A (phospho-acceptor) domain CU052_06170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_06195 PF02371 Transposase IS116/IS110/IS902 family CU052_06195 PF01548 Transposase CU052_06215 PF01320 Colicin immunity protein / pyocin immunity protein CU052_06235 PF00990 Diguanylate cyclase, GGDEF domain CU052_06235 PF08448 PAS fold CU052_06245 PF01553 Acyltransferase CU052_06250 PF01323 DSBA-like thioredoxin domain CU052_06255 PF01636 Phosphotransferase enzyme family CU052_06260 PF12801 4Fe-4S binding domain CU052_06260 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CU052_06260 PF13746 4Fe-4S dicluster domain CU052_06265 PF06288 Protein of unknown function (DUF1040) CU052_06275 PF07070 SpoOM protein CU052_06280 PF03006 Haemolysin-III related CU052_06290 PF02386 Cation transport protein CU052_06295 PF02254 TrkA-N domain CU052_06295 PF02080 TrkA-C domain CU052_06300 PF01189 16S rRNA methyltransferase RsmB/F CU052_06300 PF01029 NusB family CU052_06305 PF00551 Formyl transferase CU052_06305 PF02911 Formyl transferase, C-terminal domain CU052_06310 PF01327 Polypeptide deformylase CU052_06320 PF02481 DNA recombination-mediator protein A CU052_06320 PF17782 DprA winged helix domain CU052_06325 PF04361 Protein of unknown function (DUF494) CU052_06330 PF01396 Topoisomerase DNA binding C4 zinc finger CU052_06335 PF02222 ATP-grasp domain CU052_06335 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CU052_06340 PF00731 AIR carboxylase CU052_06345 PF01300 Telomere recombination CU052_06350 PF01218 Coproporphyrinogen III oxidase CU052_06355 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CU052_06355 PF01488 Shikimate / quinate 5-dehydrogenase CU052_06355 PF08501 Shikimate dehydrogenase substrate binding domain CU052_06365 PF00132 Bacterial transferase hexapeptide (six repeats) CU052_06415 PF00394 Multicopper oxidase CU052_06415 PF07731 Multicopper oxidase CU052_06415 PF07732 Multicopper oxidase CU052_06420 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CU052_06425 PF13667 ThiC-associated domain CU052_06425 PF01964 Radical SAM ThiC family CU052_06430 PF02581 Thiamine monophosphate synthase CU052_06435 PF00899 ThiF family CU052_06440 PF02597 ThiS family CU052_06445 PF05690 Thiazole biosynthesis protein ThiG CU052_06450 PF04055 Radical SAM superfamily CU052_06450 PF06968 Biotin and Thiamin Synthesis associated domain CU052_06455 PF01321 Creatinase/Prolidase N-terminal domain CU052_06455 PF00557 Metallopeptidase family M24 CU052_06455 PF01321 Creatinase/Prolidase N-terminal domain CU052_06455 PF00557 Metallopeptidase family M24 CU052_06460 PF03466 LysR substrate binding domain CU052_06460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_06465 PF07690 Major Facilitator Superfamily CU052_06485 PF05114 Protein of unknown function (DUF692) CU052_06495 PF00580 UvrD/REP helicase N-terminal domain CU052_06495 PF13361 UvrD-like helicase C-terminal domain CU052_06510 PF01810 LysE type translocator CU052_06520 PF00892 EamA-like transporter family CU052_06525 PF16124 RecQ zinc-binding CU052_06525 PF00570 HRDC domain CU052_06525 PF00271 Helicase conserved C-terminal domain CU052_06525 PF00270 DEAD/DEAH box helicase CU052_06525 PF09382 RQC domain CU052_06540 PF02592 Putative vitamin uptake transporter CU052_06545 PF02541 Ppx/GppA phosphatase family CU052_06550 PF00270 DEAD/DEAH box helicase CU052_06550 PF00271 Helicase conserved C-terminal domain CU052_06555 PF00085 Thioredoxin CU052_06560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CU052_06560 PF07498 Rho termination factor, N-terminal domain CU052_06560 PF07497 Rho termination factor, RNA-binding domain CU052_06570 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CU052_06575 PF00111 2Fe-2S iron-sulfur cluster binding domain CU052_06580 PF00175 Oxidoreductase NAD-binding domain CU052_06615 PF07219 HemY protein N-terminus CU052_06620 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CU052_06625 PF02602 Uroporphyrinogen-III synthase HemD CU052_06630 PF03900 Porphobilinogen deaminase, C-terminal domain CU052_06630 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CU052_06635 PF01295 Adenylate cyclase, class-I CU052_06635 PF12633 Adenylate cyclase NT domain CU052_06640 PF01491 Frataxin-like domain CU052_06650 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CU052_06650 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CU052_06655 PF01678 Diaminopimelate epimerase CU052_06665 PF00589 Phage integrase family CU052_06665 PF02899 Phage integrase, N-terminal SAM-like domain CU052_06670 PF13419 Haloacid dehalogenase-like hydrolase CU052_06700 PF12146 Serine aminopeptidase, S33 CU052_06705 PF01810 LysE type translocator CU052_06710 PF00563 EAL domain CU052_06710 PF08668 HDOD domain CU052_06715 PF01022 Bacterial regulatory protein, arsR family CU052_06720 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CU052_06720 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CU052_06745 PF10694 Protein of unknown function (DUF2500) CU052_06770 PF01914 MarC family integral membrane protein CU052_06785 PF02881 SRP54-type protein, helical bundle domain CU052_06785 PF02881 SRP54-type protein, helical bundle domain CU052_06785 PF00448 SRP54-type protein, GTPase domain CU052_06785 PF00448 SRP54-type protein, GTPase domain CU052_06790 PF00005 ABC transporter CU052_06795 PF18075 FtsX extracellular domain CU052_06800 PF00140 Sigma-70 factor, region 1.2 CU052_06800 PF04542 Sigma-70 region 2 CU052_06800 PF04545 Sigma-70, region 4 CU052_06805 PF00581 Rhodanese-like domain CU052_06810 PF01694 Rhomboid family CU052_06810 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CU052_06815 PF03748 Flagellar basal body-associated protein FliL CU052_06820 PF04345 Chorismate lyase CU052_06825 PF01040 UbiA prenyltransferase family CU052_06830 PF01553 Acyltransferase CU052_06840 PF00717 Peptidase S24-like CU052_06840 PF01726 LexA DNA binding domain CU052_06850 PF01554 MatE CU052_06855 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_06855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CU052_06860 PF00440 Bacterial regulatory proteins, tetR family CU052_06870 PF05958 tRNA (Uracil-5-)-methyltransferase CU052_06875 PF00593 TonB dependent receptor CU052_06875 PF07715 TonB-dependent Receptor Plug Domain CU052_06885 PF01177 Asp/Glu/Hydantoin racemase CU052_06975 PF13091 PLD-like domain CU052_06985 PF01565 FAD binding domain CU052_06985 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CU052_06990 PF08279 HTH domain CU052_06990 PF03099 Biotin/lipoate A/B protein ligase family CU052_06990 PF02237 Biotin protein ligase C terminal domain CU052_06995 PF00485 Phosphoribulokinase / Uridine kinase family CU052_07020 PF03143 Elongation factor Tu C-terminal domain CU052_07020 PF03144 Elongation factor Tu domain 2 CU052_07020 PF00009 Elongation factor Tu GTP binding domain CU052_07030 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CU052_07035 PF00467 KOW motif CU052_07035 PF02357 Transcription termination factor nusG CU052_07040 PF00298 Ribosomal protein L11, RNA binding domain CU052_07040 PF03946 Ribosomal protein L11, N-terminal domain CU052_07045 PF00687 Ribosomal protein L1p/L10e family CU052_07050 PF00466 Ribosomal protein L10 CU052_07055 PF00542 Ribosomal protein L7/L12 C-terminal domain CU052_07055 PF16320 Ribosomal protein L7/L12 dimerisation domain CU052_07060 PF04560 RNA polymerase Rpb2, domain 7 CU052_07060 PF04563 RNA polymerase beta subunit CU052_07060 PF00562 RNA polymerase Rpb2, domain 6 CU052_07060 PF10385 RNA polymerase beta subunit external 1 domain CU052_07060 PF04561 RNA polymerase Rpb2, domain 2 CU052_07060 PF04565 RNA polymerase Rpb2, domain 3 CU052_07065 PF00623 RNA polymerase Rpb1, domain 2 CU052_07065 PF04983 RNA polymerase Rpb1, domain 3 CU052_07065 PF05000 RNA polymerase Rpb1, domain 4 CU052_07065 PF04998 RNA polymerase Rpb1, domain 5 CU052_07065 PF04997 RNA polymerase Rpb1, domain 1 CU052_07070 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CU052_07075 PF09297 NADH pyrophosphatase zinc ribbon domain CU052_07075 PF00293 NUDIX domain CU052_07090 PF01208 Uroporphyrinogen decarboxylase (URO-D) CU052_07095 PF03167 Uracil DNA glycosylase superfamily CU052_07100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CU052_07105 PF04222 Protein of unknown function (DUF416) CU052_07110 PF00571 CBS domain CU052_07110 PF01595 Cyclin M transmembrane N-terminal domain CU052_07115 PF00216 Bacterial DNA-binding protein CU052_07125 PF02844 Phosphoribosylglycinamide synthetase, N domain CU052_07125 PF02843 Phosphoribosylglycinamide synthetase, C domain CU052_07125 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CU052_07130 PF01808 AICARFT/IMPCHase bienzyme CU052_07130 PF02142 MGS-like domain CU052_07140 PF13411 MerR HTH family regulatory protein CU052_07145 PF00486 Transcriptional regulatory protein, C terminal CU052_07145 PF18500 CadC C-terminal domain 1 CU052_07155 PF13520 Amino acid permease CU052_07160 PF01276 Orn/Lys/Arg decarboxylase, major domain CU052_07160 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CU052_07160 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CU052_07165 PF00107 Zinc-binding dehydrogenase CU052_07165 PF08240 Alcohol dehydrogenase GroES-like domain CU052_07195 PF00563 EAL domain CU052_07195 PF00990 Diguanylate cyclase, GGDEF domain CU052_07195 PF03707 Bacterial signalling protein N terminal repeat CU052_07195 PF13188 PAS domain CU052_07200 PF02954 Bacterial regulatory protein, Fis family CU052_07205 PF01207 Dihydrouridine synthase (Dus) CU052_07220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CU052_07220 PF02785 Biotin carboxylase C-terminal domain CU052_07220 PF00289 Biotin carboxylase, N-terminal domain CU052_07225 PF00364 Biotin-requiring enzyme CU052_07230 PF01220 Dehydroquinase class II CU052_07235 PF13193 AMP-binding enzyme C-terminal domain CU052_07235 PF00501 AMP-binding enzyme CU052_07235 PF16177 Acetyl-coenzyme A synthetase N-terminus CU052_07250 PF12832 MFS_1 like family CU052_07255 PF00672 HAMP domain CU052_07255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_07255 PF01627 Hpt domain CU052_07255 PF00072 Response regulator receiver domain CU052_07255 PF00512 His Kinase A (phospho-acceptor) domain CU052_07260 PF00206 Lyase CU052_07260 PF10415 Fumarase C C-terminus CU052_07285 PF01914 MarC family integral membrane protein CU052_07290 PF00196 Bacterial regulatory proteins, luxR family CU052_07290 PF00072 Response regulator receiver domain CU052_07295 PF11412 Disulphide bond corrector protein DsbC CU052_07295 PF02683 Cytochrome C biogenesis protein transmembrane region CU052_07300 PF03605 Anaerobic c4-dicarboxylate membrane transporter CU052_07305 PF00206 Lyase CU052_07305 PF10415 Fumarase C C-terminus CU052_07310 PF04186 FxsA cytoplasmic membrane protein CU052_07315 PF00588 SpoU rRNA Methylase family CU052_07320 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CU052_07320 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CU052_07325 PF00672 HAMP domain CU052_07325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_07325 PF16527 Two-component sensor protein CpxA, periplasmic domain CU052_07325 PF00512 His Kinase A (phospho-acceptor) domain CU052_07330 PF00072 Response regulator receiver domain CU052_07330 PF00486 Transcriptional regulatory protein, C terminal CU052_07335 PF07813 LTXXQ motif family protein CU052_07340 PF16916 Dimerisation domain of Zinc Transporter CU052_07340 PF01545 Cation efflux family CU052_07345 PF00365 Phosphofructokinase CU052_07350 PF01554 MatE CU052_07355 PF00166 Chaperonin 10 Kd subunit CU052_07360 PF00118 TCP-1/cpn60 chaperonin family CU052_07370 PF02308 MgtC family CU052_07375 PF04055 Radical SAM superfamily CU052_07380 PF08207 Elongation factor P (EF-P) KOW-like domain CU052_07380 PF09285 Elongation factor P, C-terminal CU052_07380 PF01132 Elongation factor P (EF-P) OB domain CU052_07395 PF02313 Fumarate reductase subunit D CU052_07400 PF02300 Fumarate reductase subunit C CU052_07405 PF13085 2Fe-2S iron-sulfur cluster binding domain CU052_07405 PF13183 4Fe-4S dicluster domain CU052_07410 PF00890 FAD binding domain CU052_07410 PF02910 Fumarate reductase flavoprotein C-term CU052_07415 PF00152 tRNA synthetases class II (D, K and N) CU052_07425 PF08360 QacR-like protein, C-terminal region CU052_07425 PF00440 Bacterial regulatory proteins, tetR family CU052_07435 PF01551 Peptidase family M23 CU052_07440 PF06426 Serine acetyltransferase, N-terminal CU052_07440 PF00132 Bacterial transferase hexapeptide (six repeats) CU052_07445 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CU052_07445 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CU052_07450 PF02556 Preprotein translocase subunit SecB CU052_07455 PF00581 Rhodanese-like domain CU052_07460 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CU052_07460 PF01676 Metalloenzyme superfamily CU052_07470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_07470 PF00672 HAMP domain CU052_07475 PF00939 Sodium:sulfate symporter transmembrane region CU052_07480 PF02666 Phosphatidylserine decarboxylase CU052_07485 PF03193 RsgA GTPase CU052_07490 PF00929 Exonuclease CU052_07555 PF08331 Domain of unknown function (DUF1730) CU052_07560 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CU052_07565 PF01520 N-acetylmuramoyl-L-alanine amidase CU052_07570 PF08676 MutL C terminal dimerisation domain CU052_07570 PF01119 DNA mismatch repair protein, C-terminal domain CU052_07580 PF17209 Hfq protein CU052_07585 PF01926 50S ribosome-binding GTPase CU052_07585 PF16360 GTP-binding GTPase Middle Region CU052_07585 PF13167 GTP-binding GTPase N-terminal CU052_07590 PF12221 Bacterial membrane protein N terminal CU052_07590 PF01145 SPFH domain / Band 7 family CU052_07595 PF01145 SPFH domain / Band 7 family CU052_07600 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CU052_07605 PF00709 Adenylosuccinate synthetase CU052_07615 PF08238 Sel1 repeat CU052_07620 PF00175 Oxidoreductase NAD-binding domain CU052_07620 PF00970 Oxidoreductase FAD-binding domain CU052_07620 PF00042 Globin CU052_07625 PF02371 Transposase IS116/IS110/IS902 family CU052_07625 PF01548 Transposase CU052_07630 PF02082 Transcriptional regulator CU052_07635 PF08206 Ribonuclease B OB domain CU052_07635 PF17876 Cold shock domain CU052_07635 PF08461 Ribonuclease R winged-helix domain CU052_07635 PF00773 RNB domain CU052_07635 PF00575 S1 RNA binding domain CU052_07640 PF08032 RNA 2'-O ribose methyltransferase substrate binding CU052_07640 PF00588 SpoU rRNA Methylase family CU052_07645 PF13419 Haloacid dehalogenase-like hydrolase CU052_07650 PF00579 tRNA synthetases class I (W and Y) CU052_07670 PF00117 Glutamine amidotransferase class-I CU052_07675 PF00202 Aminotransferase class-III CU052_07680 PF04958 Arginine N-succinyltransferase beta subunit CU052_07685 PF00171 Aldehyde dehydrogenase family CU052_07695 PF13545 Crp-like helix-turn-helix domain CU052_07695 PF00027 Cyclic nucleotide-binding domain CU052_07700 PF00485 Phosphoribulokinase / Uridine kinase family CU052_07705 PF06794 Uncharacterised protein family (UPF0270) CU052_07710 PF00561 alpha/beta hydrolase fold CU052_07720 PF00005 ABC transporter CU052_07720 PF12848 ABC transporter CU052_07730 PF02525 Flavodoxin-like fold CU052_07735 PF02254 TrkA-N domain CU052_07735 PF00999 Sodium/hydrogen exchanger family CU052_07745 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CU052_07755 PF01112 Asparaginase CU052_07760 PF04102 SlyX CU052_07770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CU052_07770 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CU052_07775 PF08348 YheO-like PAS domain CU052_07775 PF13309 HTH domain CU052_07780 PF02635 DsrE/DsrF-like family CU052_07785 PF02635 DsrE/DsrF-like family CU052_07790 PF04077 DsrH like protein CU052_07795 PF00164 Ribosomal protein S12/S23 CU052_07800 PF00177 Ribosomal protein S7p/S5e CU052_07805 PF03764 Elongation factor G, domain IV CU052_07805 PF14492 Elongation Factor G, domain II CU052_07805 PF03144 Elongation factor Tu domain 2 CU052_07805 PF00679 Elongation factor G C-terminus CU052_07805 PF00009 Elongation factor Tu GTP binding domain CU052_07810 PF03143 Elongation factor Tu C-terminal domain CU052_07810 PF03144 Elongation factor Tu domain 2 CU052_07810 PF00009 Elongation factor Tu GTP binding domain CU052_07815 PF04324 BFD-like [2Fe-2S] binding domain CU052_07820 PF00210 Ferritin-like domain CU052_07825 PF00390 Malic enzyme, N-terminal domain CU052_07825 PF03949 Malic enzyme, NAD binding domain CU052_07830 PF01340 Met Apo-repressor, MetJ CU052_07835 PF01053 Cys/Met metabolism PLP-dependent enzyme CU052_07840 PF00696 Amino acid kinase family CU052_07840 PF00742 Homoserine dehydrogenase CU052_07840 PF03447 Homoserine dehydrogenase, NAD binding domain CU052_07845 PF02219 Methylenetetrahydrofolate reductase CU052_07855 PF00311 Phosphoenolpyruvate carboxylase CU052_07860 PF07687 Peptidase dimerisation domain CU052_07860 PF01546 Peptidase family M20/M25/M40 CU052_07865 PF02774 Semialdehyde dehydrogenase, dimerisation domain CU052_07865 PF01118 Semialdehyde dehydrogenase, NAD binding domain CU052_07870 PF00696 Amino acid kinase family CU052_07875 PF00764 Arginosuccinate synthase CU052_07880 PF00583 Acetyltransferase (GNAT) family CU052_07880 PF00206 Lyase CU052_07880 PF14698 Argininosuccinate lyase C-terminal CU052_07895 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_07895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CU052_07900 PF08534 Redoxin CU052_07900 PF00462 Glutaredoxin CU052_07905 PF03466 LysR substrate binding domain CU052_07905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_07910 PF00912 Transglycosylase CU052_07910 PF17092 Penicillin-binding protein OB-like domain CU052_07910 PF00905 Penicillin binding protein transpeptidase domain CU052_07935 PF07660 Secretin and TonB N terminus short domain CU052_07935 PF03958 Bacterial type II/III secretion system short domain CU052_07935 PF00263 Bacterial type II and III secretion system protein CU052_07935 PF11741 AMIN domain CU052_07940 PF01202 Shikimate kinase CU052_07945 PF01761 3-dehydroquinate synthase CU052_07955 PF02086 D12 class N6 adenine-specific DNA methyltransferase CU052_07960 PF00834 Ribulose-phosphate 3 epimerase family CU052_07965 PF01250 Ribosomal protein S6 CU052_07970 PF01084 Ribosomal protein S18 CU052_07975 PF01281 Ribosomal protein L9, N-terminal domain CU052_07975 PF03948 Ribosomal protein L9, C-terminal domain CU052_07985 PF03796 DnaB-like helicase C terminal domain CU052_07985 PF00772 DnaB-like helicase N terminal domain CU052_07990 PF00842 Alanine racemase, C-terminal domain CU052_07990 PF01168 Alanine racemase, N-terminal domain CU052_08000 PF01894 Uncharacterised protein family UPF0047 CU052_08005 PF00342 Phosphoglucose isomerase CU052_08015 PF01475 Ferric uptake regulator family CU052_08020 PF01207 Dihydrouridine synthase (Dus) CU052_08040 PF00175 Oxidoreductase NAD-binding domain CU052_08040 PF00258 Flavodoxin CU052_08040 PF00667 FAD binding domain CU052_08045 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CU052_08045 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CU052_08050 PF01507 Phosphoadenosine phosphosulfate reductase family CU052_08085 PF00999 Sodium/hydrogen exchanger family CU052_08090 PF02574 Homocysteine S-methyltransferase CU052_08090 PF02607 B12 binding domain CU052_08090 PF02310 B12 binding domain CU052_08090 PF00809 Pterin binding enzyme CU052_08090 PF02965 Vitamin B12 dependent methionine synthase, activation domain CU052_08095 PF01842 ACT domain CU052_08095 PF00696 Amino acid kinase family CU052_08105 PF00266 Aminotransferase class-V CU052_08115 PF17760 UvrA interaction domain CU052_08115 PF17755 UvrA DNA-binding domain CU052_08115 PF00005 ABC transporter CU052_08120 PF00483 Nucleotidyl transferase CU052_08125 PF00196 Bacterial regulatory proteins, luxR family CU052_08130 PF00436 Single-strand binding protein family CU052_08135 PF17157 Gammaproteobacterial periplasmic sensor domain CU052_08135 PF00563 EAL domain CU052_08135 PF00990 Diguanylate cyclase, GGDEF domain CU052_08145 PF04986 Putative transposase CU052_08145 PF14319 Transposase zinc-binding domain CU052_08170 PF03958 Bacterial type II/III secretion system short domain CU052_08170 PF00263 Bacterial type II and III secretion system protein CU052_08175 PF13401 AAA domain CU052_08175 PF01471 Putative peptidoglycan binding domain CU052_08185 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CU052_08185 PF00437 Type II/IV secretion system protein CU052_08190 PF00482 Type II secretion system (T2SS), protein F CU052_08200 PF08334 Type II secretion system (T2SS), protein G CU052_08200 PF07963 Prokaryotic N-terminal methylation motif CU052_08240 PF04085 rod shape-determining protein MreC CU052_08245 PF04093 rod shape-determining protein MreD CU052_08250 PF02545 Maf-like protein CU052_08255 PF00575 S1 RNA binding domain CU052_08255 PF10150 Ribonuclease E/G family CU052_08260 PF13502 AsmA-like C-terminal region CU052_08260 PF13116 Protein of unknown function CU052_08265 PF00795 Carbon-nitrogen hydrolase CU052_08270 PF01523 Putative modulator of DNA gyrase CU052_08275 PF02562 PhoH-like protein CU052_08275 PF13638 PIN domain CU052_08280 PF18339 RapA N-terminal Tudor like domain 1 CU052_08280 PF00176 SNF2 family N-terminal domain CU052_08280 PF12137 RNA polymerase recycling family C-terminal CU052_08280 PF00271 Helicase conserved C-terminal domain CU052_08280 PF18337 RapA N-terminal Tudor like domain CU052_08290 PF00849 RNA pseudouridylate synthase CU052_08295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CU052_08295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CU052_08300 PF04751 Protein of unknown function (DUF615) CU052_08305 PF01523 Putative modulator of DNA gyrase CU052_08310 PF00571 CBS domain CU052_08310 PF03448 MgtE intracellular N domain CU052_08310 PF01769 Divalent cation transporter CU052_08315 PF00381 PTS HPr component phosphorylation site CU052_08320 PF03668 P-loop ATPase protein family CU052_08325 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CU052_08330 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CU052_08335 PF00309 Sigma-54 factor, Activator interacting domain (AID) CU052_08335 PF04963 Sigma-54 factor, core binding domain CU052_08335 PF04552 Sigma-54, DNA binding domain CU052_08340 PF12399 Branched-chain amino acid ATP-binding cassette transporter CU052_08340 PF00005 ABC transporter CU052_08345 PF03968 OstA-like protein CU052_08355 PF01380 SIS domain CU052_08355 PF00571 CBS domain CU052_08360 PF01699 Sodium/calcium exchanger protein CU052_08365 PF00005 ABC transporter CU052_08370 PF02405 Permease MlaE CU052_08375 PF02470 MlaD protein CU052_08380 PF05494 MlaC protein CU052_08390 PF01722 BolA-like protein CU052_08395 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CU052_08400 PF01553 Acyltransferase CU052_08405 PF01042 Endoribonuclease L-PSP CU052_08410 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CU052_08410 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CU052_08415 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CU052_08415 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CU052_08425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CU052_08425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CU052_08435 PF06877 Regulator of ribonuclease activity B CU052_08445 PF00583 Acetyltransferase (GNAT) family CU052_08455 PF08264 Anticodon-binding domain of tRNA CU052_08455 PF10458 Valyl tRNA synthetase tRNA binding arm CU052_08455 PF00133 tRNA synthetases class I (I, L, M and V) CU052_08460 PF04364 DNA polymerase III chi subunit, HolC CU052_08465 PF02789 Cytosol aminopeptidase family, N-terminal domain CU052_08465 PF00883 Cytosol aminopeptidase family, catalytic domain CU052_08470 PF03739 Lipopolysaccharide export system permease LptF/LptG CU052_08475 PF03739 Lipopolysaccharide export system permease LptF/LptG CU052_08485 PF00106 short chain dehydrogenase CU052_08505 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CU052_08510 PF02378 Phosphotransferase system, EIIC CU052_08515 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CU052_08520 PF02056 Family 4 glycosyl hydrolase CU052_08520 PF11975 Family 4 glycosyl hydrolase C-terminal domain CU052_08525 PF04794 YdjC-like protein CU052_08530 PF00356 Bacterial regulatory proteins, lacI family CU052_08530 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CU052_08535 PF00072 Response regulator receiver domain CU052_08590 PF00171 Aldehyde dehydrogenase family CU052_08620 PF17200 Single Cache domain 2 CU052_08620 PF00672 HAMP domain CU052_08620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_08660 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CU052_08660 PF01464 Transglycosylase SLT domain CU052_08665 PF04362 Bacterial Fe(2+) trafficking CU052_08670 PF00633 Helix-hairpin-helix motif CU052_08670 PF14815 NUDIX domain CU052_08670 PF00730 HhH-GPD superfamily base excision DNA repair protein CU052_08675 PF02390 Putative methyltransferase CU052_08680 PF02086 D12 class N6 adenine-specific DNA methyltransferase CU052_08685 PF04960 Glutaminase CU052_08690 PF06969 HemN C-terminal domain CU052_08690 PF04055 Radical SAM superfamily CU052_08695 PF01725 Ham1 family CU052_08705 PF02594 Uncharacterised ACR, YggU family COG1872 CU052_08710 PF02325 YGGT family CU052_08715 PF14748 Pyrroline-5-carboxylate reductase dimerisation CU052_08715 PF03807 NADP oxidoreductase coenzyme F420-dependent CU052_08720 PF01168 Alanine racemase, N-terminal domain CU052_08725 PF00437 Type II/IV secretion system protein CU052_08730 PF00437 Type II/IV secretion system protein CU052_08735 PF03652 Holliday junction resolvase CU052_08740 PF02622 Uncharacterized ACR, COG1678 CU052_08745 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CU052_08745 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CU052_08750 PF04452 RNA methyltransferase CU052_08755 PF04231 Endonuclease I CU052_08765 PF10263 SprT-like family CU052_08765 PF17283 SprT-like zinc ribbon domain CU052_08775 PF02773 S-adenosylmethionine synthetase, C-terminal domain CU052_08775 PF00438 S-adenosylmethionine synthetase, N-terminal domain CU052_08775 PF02772 S-adenosylmethionine synthetase, central domain CU052_08780 PF00456 Transketolase, thiamine diphosphate binding domain CU052_08780 PF02780 Transketolase, C-terminal domain CU052_08780 PF02779 Transketolase, pyrimidine binding domain CU052_08790 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CU052_08790 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CU052_08795 PF00162 Phosphoglycerate kinase CU052_08800 PF01116 Fructose-bisphosphate aldolase class-II CU052_08805 PF00924 Mechanosensitive ion channel CU052_08805 PF05552 Conserved TM helix CU052_08815 PF01810 LysE type translocator CU052_08820 PF03466 LysR substrate binding domain CU052_08820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_08825 PF04402 Protein of unknown function (DUF541) CU052_08830 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CU052_08830 PF01842 ACT domain CU052_08830 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CU052_08835 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CU052_08840 PF01812 5-formyltetrahydrofolate cyclo-ligase family CU052_08850 PF05164 Cell division protein ZapA CU052_08860 PF03695 Uncharacterised protein family (UPF0149) CU052_08865 PF01494 FAD binding domain CU052_08870 PF01494 FAD binding domain CU052_08890 PF03937 Flavinator of succinate dehydrogenase CU052_08900 PF00890 FAD binding domain CU052_08900 PF02910 Fumarate reductase flavoprotein C-term CU052_08910 PF08281 Sigma-70, region 4 CU052_08910 PF04542 Sigma-70 region 2 CU052_08915 PF03872 Anti sigma-E protein RseA, N-terminal domain CU052_08915 PF03873 Anti sigma-E protein RseA, C-terminal domain CU052_08920 PF17188 MucB/RseB C-terminal domain CU052_08920 PF03888 MucB/RseB N-terminal domain CU052_08930 PF06421 GTP-binding protein LepA C-terminus CU052_08930 PF03144 Elongation factor Tu domain 2 CU052_08930 PF00009 Elongation factor Tu GTP binding domain CU052_08930 PF00679 Elongation factor G C-terminus CU052_08935 PF10502 Signal peptidase, peptidase S26 CU052_08940 PF00035 Double-stranded RNA binding motif CU052_08940 PF14622 Ribonuclease-III-like CU052_08945 PF01926 50S ribosome-binding GTPase CU052_08945 PF07650 KH domain CU052_08950 PF02565 Recombination protein O C terminal CU052_08950 PF11967 Recombination protein O N terminal CU052_08955 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CU052_08960 PF01648 4'-phosphopantetheinyl transferase superfamily CU052_08965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_08965 PF00672 HAMP domain CU052_08965 PF00512 His Kinase A (phospho-acceptor) domain CU052_08965 PF01627 Hpt domain CU052_08965 PF00072 Response regulator receiver domain CU052_08965 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CU052_08975 PF01938 TRAM domain CU052_08975 PF05958 tRNA (Uracil-5-)-methyltransferase CU052_08980 PF13291 ACT domain CU052_08980 PF04607 Region found in RelA / SpoT proteins CU052_08980 PF02824 TGS domain CU052_08985 PF03819 MazG nucleotide pyrophosphohydrolase domain CU052_08990 PF00117 Glutamine amidotransferase class-I CU052_08990 PF06418 CTP synthase N-terminus CU052_08995 PF00113 Enolase, C-terminal TIM barrel domain CU052_08995 PF03952 Enolase, N-terminal domain CU052_09000 PF04977 Septum formation initiator CU052_09005 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CU052_09010 PF02542 YgbB family CU052_09015 PF01142 tRNA pseudouridine synthase D (TruD) CU052_09020 PF01975 Survival protein SurE CU052_09030 PF01551 Peptidase family M23 CU052_09030 PF01476 LysM domain CU052_09035 PF04545 Sigma-70, region 4 CU052_09035 PF04539 Sigma-70 region 3 CU052_09035 PF04542 Sigma-70 region 2 CU052_09035 PF00140 Sigma-70 factor, region 1.2 CU052_09040 PF05188 MutS domain II CU052_09040 PF05192 MutS domain III CU052_09040 PF05190 MutS family domain IV CU052_09040 PF01624 MutS domain I CU052_09040 PF00488 MutS domain V CU052_09045 PF02464 Competence-damaged protein CU052_09050 PF00154 recA bacterial DNA recombination protein CU052_09055 PF02631 RecX family CU052_09060 PF01411 tRNA synthetases class II (A) CU052_09060 PF02272 DHHA1 domain CU052_09060 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CU052_09065 PF00696 Amino acid kinase family CU052_09065 PF01842 ACT domain CU052_09065 PF13840 ACT domain CU052_09070 PF02599 Global regulator protein family CU052_09125 PF04277 Oxaloacetate decarboxylase, gamma chain CU052_09130 PF00364 Biotin-requiring enzyme CU052_09130 PF02436 Conserved carboxylase domain CU052_09130 PF00682 HMGL-like CU052_09135 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CU052_09150 PF05193 Peptidase M16 inactive domain CU052_09150 PF00675 Insulinase (Peptidase family M16) CU052_09155 PF04262 Glutamate-cysteine ligase CU052_09165 PF02664 S-Ribosylhomocysteinase (LuxS) CU052_09170 PF00571 CBS domain CU052_09170 PF03471 Transporter associated domain CU052_09170 PF01595 Cyclin M transmembrane N-terminal domain CU052_09175 PF01578 Cytochrome C assembly protein CU052_09180 PF02978 Signal peptide binding domain CU052_09180 PF02881 SRP54-type protein, helical bundle domain CU052_09180 PF00448 SRP54-type protein, GTPase domain CU052_09185 PF00886 Ribosomal protein S16 CU052_09190 PF01782 RimM N-terminal domain CU052_09190 PF05239 PRC-barrel domain CU052_09195 PF01746 tRNA (Guanine-1)-methyltransferase CU052_09200 PF01245 Ribosomal protein L19 CU052_09205 PF03884 DNA gyrase inhibitor YacG CU052_09210 PF07072 Cell division protein CU052_09215 PF01121 Dephospho-CoA kinase CU052_09220 PF01478 Type IV leader peptidase family CU052_09220 PF06750 Bacterial Peptidase A24 N-terminal domain CU052_09225 PF00482 Type II secretion system (T2SS), protein F CU052_09230 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CU052_09230 PF00437 Type II/IV secretion system protein CU052_09235 PF07963 Prokaryotic N-terminal methylation motif CU052_09235 PF00114 Pilin (bacterial filament) CU052_09245 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CU052_09245 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CU052_09250 PF01510 N-acetylmuramoyl-L-alanine amidase CU052_09255 PF00392 Bacterial regulatory proteins, gntR family CU052_09255 PF07729 FCD domain CU052_09260 PF00456 Transketolase, thiamine diphosphate binding domain CU052_09260 PF17831 Pyruvate dehydrogenase E1 component middle domain CU052_09265 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CU052_09265 PF02817 e3 binding domain CU052_09265 PF00364 Biotin-requiring enzyme CU052_09270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CU052_09270 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_09275 PF00440 Bacterial regulatory proteins, tetR family CU052_09280 PF00156 Phosphoribosyl transferase domain CU052_09285 PF00484 Carbonic anhydrase CU052_09290 PF00916 Sulfate permease family CU052_09290 PF01740 STAS domain CU052_09295 PF00005 ABC transporter CU052_09300 PF01061 ABC-2 type transporter CU052_09305 PF03279 Bacterial lipid A biosynthesis acyltransferase CU052_09310 PF02569 Pantoate-beta-alanine ligase CU052_09315 PF02548 Ketopantoate hydroxymethyltransferase CU052_09320 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CU052_09325 PF12626 Polymerase A arginine-rich C-terminus CU052_09325 PF12627 Probable RNA and SrmB- binding site of polymerase A CU052_09325 PF01743 Poly A polymerase head domain CU052_09335 PF00749 tRNA synthetases class I (E and Q), catalytic domain CU052_09340 PF01258 Prokaryotic dksA/traR C4-type zinc finger CU052_09345 PF17746 SfsA N-terminal OB domain CU052_09345 PF03749 Sugar fermentation stimulation protein RE domain CU052_09350 PF00270 DEAD/DEAH box helicase CU052_09350 PF08482 ATP-dependent helicase C-terminal CU052_09350 PF00271 Helicase conserved C-terminal domain CU052_09350 PF04408 Helicase associated domain (HA2) CU052_09355 PF14814 Bifunctional transglycosylase second domain CU052_09355 PF00912 Transglycosylase CU052_09355 PF00905 Penicillin binding protein transpeptidase domain CU052_09360 PF01734 Patatin-like phospholipase CU052_09365 PF00330 Aconitase family (aconitate hydratase) CU052_09365 PF11791 Aconitate B N-terminal domain CU052_09365 PF06434 Aconitate hydratase 2 N-terminus CU052_09375 PF06062 Uncharacterised protein family (UPF0231) CU052_09380 PF00543 Nitrogen regulatory protein P-II CU052_09385 PF00909 Ammonium Transporter Family CU052_09390 PF13416 Bacterial extracellular solute-binding protein CU052_09400 PF00005 ABC transporter CU052_09400 PF08402 TOBE domain CU052_09405 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CU052_09405 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CU052_09405 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CU052_09405 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CU052_09410 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CU052_09410 PF06165 Glycosyltransferase family 36 CU052_09415 PF00728 Glycosyl hydrolase family 20, catalytic domain CU052_09415 PF02838 Glycosyl hydrolase family 20, domain 2 CU052_09420 PF01869 BadF/BadG/BcrA/BcrD ATPase family CU052_09430 PF00005 ABC transporter CU052_09430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_09435 PF00005 ABC transporter CU052_09435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_09440 PF00528 Binding-protein-dependent transport system inner membrane component CU052_09440 PF12911 N-terminal TM domain of oligopeptide transport permease C CU052_09445 PF00528 Binding-protein-dependent transport system inner membrane component CU052_09450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CU052_09455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_09455 PF00497 Bacterial extracellular solute-binding proteins, family 3 CU052_09455 PF00512 His Kinase A (phospho-acceptor) domain CU052_09455 PF00072 Response regulator receiver domain CU052_09465 PF05175 Methyltransferase small domain CU052_09465 PF08468 Methyltransferase small domain N-terminal CU052_09470 PF01594 AI-2E family transporter CU052_09475 PF00202 Aminotransferase class-III CU052_09480 PF01521 Iron-sulphur cluster biosynthesis CU052_09485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_09490 PF00873 AcrB/AcrD/AcrF family CU052_09495 PF01476 LysM domain CU052_09495 PF08525 Opacity-associated protein A N-terminal motif CU052_09495 PF01551 Peptidase family M23 CU052_09500 PF00579 tRNA synthetases class I (W and Y) CU052_09510 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CU052_09515 PF13609 Gram-negative porin CU052_09520 PF01272 Transcription elongation factor, GreA/GreB, C-term CU052_09520 PF03449 Transcription elongation factor, N-terminal CU052_09525 PF01985 CRS1 / YhbY (CRM) domain CU052_09530 PF01728 FtsJ-like methyltransferase CU052_09535 PF00004 ATPase family associated with various cellular activities (AAA) CU052_09535 PF06480 FtsH Extracellular CU052_09535 PF01434 Peptidase family M41 CU052_09535 PF17862 AAA+ lid domain CU052_09540 PF00809 Pterin binding enzyme CU052_09545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CU052_09545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CU052_09545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CU052_09545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CU052_09550 PF03840 Preprotein translocase SecG subunit CU052_09565 PF02576 RimP N-terminal domain CU052_09565 PF17384 RimP C-terminal SH3 domain CU052_09570 PF13184 NusA-like KH domain CU052_09570 PF08529 NusA N-terminal domain CU052_09570 PF00575 S1 RNA binding domain CU052_09575 PF11987 Translation-initiation factor 2 CU052_09575 PF00009 Elongation factor Tu GTP binding domain CU052_09575 PF04760 Translation initiation factor IF-2, N-terminal region CU052_09575 PF08364 Bacterial translation initiation factor IF-2 associated region CU052_09580 PF02033 Ribosome-binding factor A CU052_09585 PF09157 Pseudouridine synthase II TruB, C-terminal CU052_09585 PF16198 tRNA pseudouridylate synthase B C-terminal domain CU052_09585 PF01509 TruB family pseudouridylate synthase (N terminal domain) CU052_09590 PF00312 Ribosomal protein S15 CU052_09595 PF00575 S1 RNA binding domain CU052_09595 PF03725 3' exoribonuclease family, domain 2 CU052_09595 PF01138 3' exoribonuclease family, domain 1 CU052_09595 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CU052_09595 PF00013 KH domain CU052_09600 PF07719 Tetratricopeptide repeat CU052_09600 PF13181 Tetratricopeptide repeat CU052_09610 PF01554 MatE CU052_09625 PF00563 EAL domain CU052_09625 PF00990 Diguanylate cyclase, GGDEF domain CU052_09625 PF03707 Bacterial signalling protein N terminal repeat CU052_09635 PF13508 Acetyltransferase (GNAT) domain CU052_09655 PF05230 MASE2 domain CU052_09655 PF00990 Diguanylate cyclase, GGDEF domain CU052_09660 PF00009 Elongation factor Tu GTP binding domain CU052_09660 PF16658 Class II release factor RF3, C-terminal domain CU052_09660 PF03144 Elongation factor Tu domain 2 CU052_09670 PF01026 TatD related DNase CU052_09675 PF01773 Na+ dependent nucleoside transporter N-terminus CU052_09675 PF07670 Nucleoside recognition CU052_09675 PF07662 Na+ dependent nucleoside transporter C-terminus CU052_09680 PF01791 DeoC/LacD family aldolase CU052_09685 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CU052_09685 PF00591 Glycosyl transferase family, a/b domain CU052_09685 PF02885 Glycosyl transferase family, helical bundle domain CU052_09690 PF01676 Metalloenzyme superfamily CU052_09695 PF01048 Phosphorylase superfamily CU052_09705 PF18429 Domain of unknown function (DUF5609) CU052_09715 PF18073 Rubredoxin metal binding domain CU052_09720 PF03144 Elongation factor Tu domain 2 CU052_09720 PF03764 Elongation factor G, domain IV CU052_09720 PF14492 Elongation Factor G, domain II CU052_09720 PF00009 Elongation factor Tu GTP binding domain CU052_09720 PF00679 Elongation factor G C-terminus CU052_09725 PF03466 LysR substrate binding domain CU052_09725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_09735 PF00501 AMP-binding enzyme CU052_09740 PF12833 Helix-turn-helix domain CU052_09740 PF02805 Metal binding domain of Ada CU052_09765 PF13629 Pilus formation protein N terminal region CU052_09765 PF00263 Bacterial type II and III secretion system protein CU052_09765 PF04972 BON domain CU052_09780 PF00437 Type II/IV secretion system protein CU052_09825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_09825 PF03466 LysR substrate binding domain CU052_09830 PF13520 Amino acid permease CU052_09835 PF04074 YhcH/YjgK/YiaL CU052_09840 PF02837 Glycosyl hydrolases family 2, sugar binding domain CU052_09840 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CU052_09840 PF00703 Glycosyl hydrolases family 2 CU052_09840 PF16353 Domain of unknown function(DUF4981) CU052_09840 PF02929 Beta galactosidase small chain CU052_09850 PF01588 Putative tRNA binding domain CU052_09860 PF02378 Phosphotransferase system, EIIC CU052_09860 PF00367 phosphotransferase system, EIIB CU052_09865 PF00356 Bacterial regulatory proteins, lacI family CU052_09870 PF01263 Aldose 1-epimerase CU052_09875 PF08544 GHMP kinases C terminal CU052_09875 PF10509 Galactokinase galactose-binding signature CU052_09875 PF00288 GHMP kinases N terminal domain CU052_09880 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CU052_09880 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CU052_09885 PF16363 GDP-mannose 4,6 dehydratase CU052_09890 PF00905 Penicillin binding protein transpeptidase domain CU052_09890 PF03717 Penicillin-binding Protein dimerisation domain CU052_09900 PF00356 Bacterial regulatory proteins, lacI family CU052_09915 PF01464 Transglycosylase SLT domain CU052_09915 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CU052_09920 PF01266 FAD dependent oxidoreductase CU052_09920 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CU052_09925 PF08220 DeoR-like helix-turn-helix domain CU052_09925 PF00455 DeoR C terminal sensor domain CU052_09930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CU052_09930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CU052_09935 PF00230 Major intrinsic protein CU052_09945 PF07690 Major Facilitator Superfamily CU052_09950 PF03009 Glycerophosphoryl diester phosphodiesterase family CU052_09955 PF14602 Hexapeptide repeat of succinyl-transferase CU052_09955 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CU052_09970 PF07130 YebG protein CU052_09975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_09975 PF03466 LysR substrate binding domain CU052_09985 PF00884 Sulfatase CU052_09985 PF11893 Domain of unknown function (DUF3413) CU052_09990 PF17946 RecC C-terminal domain CU052_09995 PF12705 PD-(D/E)XK nuclease superfamily CU052_09995 PF00580 UvrD/REP helicase N-terminal domain CU052_09995 PF13361 UvrD-like helicase C-terminal domain CU052_10000 PF13538 UvrD-like helicase C-terminal domain CU052_10025 PF00583 Acetyltransferase (GNAT) family CU052_10025 PF00696 Amino acid kinase family CU052_10040 PF06725 3D domain CU052_10040 PF03562 MltA specific insert domain CU052_10045 PF00899 ThiF family CU052_10050 PF02657 Fe-S metabolism associated domain CU052_10055 PF00266 Aminotransferase class-V CU052_10060 PF01965 DJ-1/PfpI family CU052_10065 PF08546 Ketopantoate reductase PanE/ApbA C terminal CU052_10065 PF02558 Ketopantoate reductase PanE/ApbA CU052_10070 PF03502 Nucleoside-specific channel-forming protein, Tsx CU052_10090 PF04542 Sigma-70 region 2 CU052_10090 PF04545 Sigma-70, region 4 CU052_10100 PF07690 Major Facilitator Superfamily CU052_10105 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CU052_10115 PF05175 Methyltransferase small domain CU052_10120 PF01722 BolA-like protein CU052_10125 PF11973 NQRA C-terminal domain CU052_10125 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CU052_10130 PF03116 NQR2, RnfD, RnfE family CU052_10135 PF04205 FMN-binding domain CU052_10140 PF02508 Rnf-Nqr subunit, membrane protein CU052_10145 PF02508 Rnf-Nqr subunit, membrane protein CU052_10150 PF00175 Oxidoreductase NAD-binding domain CU052_10150 PF00970 Oxidoreductase FAD-binding domain CU052_10150 PF00111 2Fe-2S iron-sulfur cluster binding domain CU052_10155 PF02424 ApbE family CU052_10165 PF00072 Response regulator receiver domain CU052_10165 PF00990 Diguanylate cyclase, GGDEF domain CU052_10170 PF11798 IMS family HHH motif CU052_10170 PF00817 impB/mucB/samB family CU052_10170 PF11799 impB/mucB/samB family C-terminal domain CU052_10175 PF09382 RQC domain CU052_10175 PF00570 HRDC domain CU052_10175 PF00271 Helicase conserved C-terminal domain CU052_10175 PF00270 DEAD/DEAH box helicase CU052_10175 PF16124 RecQ zinc-binding CU052_10180 PF01272 Transcription elongation factor, GreA/GreB, C-term CU052_10180 PF03449 Transcription elongation factor, N-terminal CU052_10190 PF00041 Fibronectin type III domain CU052_10190 PF00704 Glycosyl hydrolases family 18 CU052_10195 PF00209 Sodium:neurotransmitter symporter family CU052_10205 PF06786 Uncharacterised protein family (UPF0253) CU052_10215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CU052_10215 PF04073 Aminoacyl-tRNA editing domain CU052_10215 PF03129 Anticodon binding domain CU052_10220 PF18389 TrmO C-terminal domain CU052_10220 PF01980 tRNA-methyltransferase O CU052_10225 PF01197 Ribosomal protein L31 CU052_10230 PF00444 Ribosomal protein L36 CU052_10235 PF03806 AbgT putative transporter family CU052_10260 PF01370 NAD dependent epimerase/dehydratase family CU052_10270 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CU052_10305 PF04287 tRNA pseudouridine synthase C CU052_10310 PF00849 RNA pseudouridylate synthase CU052_10315 PF11944 Protein of unknown function (DUF3461) CU052_10320 PF01909 Nucleotidyltransferase domain CU052_10320 PF01842 ACT domain CU052_10320 PF08335 GlnD PII-uridylyltransferase CU052_10320 PF01966 HD domain CU052_10325 PF00557 Metallopeptidase family M24 CU052_10330 PF00318 Ribosomal protein S2 CU052_10335 PF00889 Elongation factor TS CU052_10340 PF00696 Amino acid kinase family CU052_10345 PF01765 Ribosome recycling factor CU052_10350 PF01255 Putative undecaprenyl diphosphate synthase CU052_10360 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CU052_10360 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CU052_10360 PF13288 DXP reductoisomerase C-terminal domain CU052_10365 PF17820 PDZ domain CU052_10365 PF02163 Peptidase family M50 CU052_10370 PF01103 Surface antigen CU052_10370 PF07244 Surface antigen variable number repeat CU052_10375 PF03938 Outer membrane protein (OmpH-like) CU052_10380 PF00132 Bacterial transferase hexapeptide (six repeats) CU052_10380 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CU052_10385 PF07977 FabA-like domain CU052_10390 PF00132 Bacterial transferase hexapeptide (six repeats) CU052_10390 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CU052_10395 PF02684 Lipid-A-disaccharide synthetase CU052_10400 PF01351 Ribonuclease HII CU052_10405 PF14579 Helix-hairpin-helix motif CU052_10405 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CU052_10405 PF07733 Bacterial DNA polymerase III alpha NTPase domain CU052_10405 PF02811 PHP domain CU052_10405 PF01336 OB-fold nucleic acid binding domain CU052_10410 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CU052_10415 PF11734 TilS substrate C-terminal domain CU052_10415 PF01171 PP-loop family CU052_10415 PF09179 TilS substrate binding domain CU052_10420 PF00034 Cytochrome c CU052_10425 PF00543 Nitrogen regulatory protein P-II CU052_10440 PF01464 Transglycosylase SLT domain CU052_10440 PF01476 LysM domain CU052_10445 PF16123 Hydroxyacylglutathione hydrolase C-terminus CU052_10450 PF08241 Methyltransferase domain CU052_10455 PF00075 RNase H CU052_10460 PF00929 Exonuclease CU052_10480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CU052_10480 PF02770 Acyl-CoA dehydrogenase, middle domain CU052_10480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CU052_10480 PF09317 Domain of unknown function (DUF1974) CU052_10485 PF13580 SIS domain CU052_10490 PF13230 Glutamine amidotransferases class-II CU052_10495 PF00551 Formyl transferase CU052_10505 PF02769 AIR synthase related protein, C-terminal domain CU052_10505 PF00586 AIR synthase related protein, N-terminal domain CU052_10515 PF00860 Permease family CU052_10530 PF03358 NADPH-dependent FMN reductase CU052_10535 PF03960 ArsC family CU052_10540 PF13181 Tetratricopeptide repeat CU052_10540 PF01435 Peptidase family M48 CU052_10550 PF01594 AI-2E family transporter CU052_10555 PF00578 AhpC/TSA family CU052_10560 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CU052_10560 PF11867 Domain of unknown function (DUF3387) CU052_10560 PF18766 SWI2/SNF2 ATPase CU052_10570 PF01420 Type I restriction modification DNA specificity domain CU052_10575 PF02384 N-6 DNA Methylase CU052_10635 PF00005 ABC transporter CU052_10640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CU052_10645 PF00528 Binding-protein-dependent transport system inner membrane component CU052_10650 PF12911 N-terminal TM domain of oligopeptide transport permease C CU052_10650 PF00528 Binding-protein-dependent transport system inner membrane component CU052_10655 PF00005 ABC transporter CU052_10655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_10670 PF00975 Thioesterase domain CU052_10675 PF00593 TonB dependent receptor CU052_10675 PF07715 TonB-dependent Receptor Plug Domain CU052_10680 PF03621 MbtH-like protein CU052_10685 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CU052_10690 PF00975 Thioesterase domain CU052_10690 PF00501 AMP-binding enzyme CU052_10690 PF00668 Condensation domain CU052_10690 PF13193 AMP-binding enzyme C-terminal domain CU052_10690 PF00550 Phosphopantetheine attachment site CU052_10695 PF00501 AMP-binding enzyme CU052_10695 PF00668 Condensation domain CU052_10695 PF13193 AMP-binding enzyme C-terminal domain CU052_10695 PF00550 Phosphopantetheine attachment site CU052_10700 PF00668 Condensation domain CU052_10700 PF13193 AMP-binding enzyme C-terminal domain CU052_10700 PF00501 AMP-binding enzyme CU052_10700 PF00550 Phosphopantetheine attachment site CU052_10730 PF05193 Peptidase M16 inactive domain CU052_10730 PF00675 Insulinase (Peptidase family M16) CU052_10735 PF06472 ABC transporter transmembrane region 2 CU052_10735 PF00005 ABC transporter CU052_10740 PF07715 TonB-dependent Receptor Plug Domain CU052_10750 PF01618 MotA/TolQ/ExbB proton channel family CU052_10755 PF01618 MotA/TolQ/ExbB proton channel family CU052_10760 PF02472 Biopolymer transport protein ExbD/TolR CU052_10820 PF00578 AhpC/TSA family CU052_10860 PF01842 ACT domain CU052_10865 PF00701 Dihydrodipicolinate synthetase family CU052_10885 PF07687 Peptidase dimerisation domain CU052_10885 PF01546 Peptidase family M20/M25/M40 CU052_10890 PF03960 ArsC family CU052_10910 PF11143 Protein of unknown function (DUF2919) CU052_10915 PF04261 Dyp-type peroxidase family CU052_10920 PF12833 Helix-turn-helix domain CU052_10925 PF02056 Family 4 glycosyl hydrolase CU052_10925 PF11975 Family 4 glycosyl hydrolase C-terminal domain CU052_10935 PF07196 Flagellin hook IN motif CU052_10935 PF00700 Bacterial flagellin C-terminal helical region CU052_10935 PF00669 Bacterial flagellin N-terminal helical region CU052_10945 PF00669 Bacterial flagellin N-terminal helical region CU052_10945 PF07196 Flagellin hook IN motif CU052_10945 PF00700 Bacterial flagellin C-terminal helical region CU052_10955 PF00669 Bacterial flagellin N-terminal helical region CU052_10955 PF07196 Flagellin hook IN motif CU052_10955 PF00700 Bacterial flagellin C-terminal helical region CU052_10960 PF03646 FlaG protein CU052_10965 PF02465 Flagellar hook-associated protein 2 N-terminus CU052_10965 PF07196 Flagellin hook IN motif CU052_10965 PF07195 Flagellar hook-associated protein 2 C-terminus CU052_10975 PF02561 Flagellar protein FliS CU052_10980 PF02954 Bacterial regulatory protein, Fis family CU052_10980 PF00072 Response regulator receiver domain CU052_10980 PF00158 Sigma-54 interaction domain CU052_10985 PF00512 His Kinase A (phospho-acceptor) domain CU052_10985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_10990 PF00072 Response regulator receiver domain CU052_10990 PF00158 Sigma-54 interaction domain CU052_10990 PF02954 Bacterial regulatory protein, Fis family CU052_10995 PF02049 Flagellar hook-basal body complex protein FliE CU052_11000 PF01514 Secretory protein of YscJ/FliF family CU052_11000 PF08345 Flagellar M-ring protein C-terminal CU052_11005 PF14842 FliG N-terminal domain CU052_11005 PF01706 FliG C-terminal domain CU052_11005 PF14841 FliG middle domain CU052_11015 PF18269 T3SS EscN ATPase C-terminal domain CU052_11015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CU052_11040 PF02154 Flagellar motor switch protein FliM CU052_11040 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CU052_11045 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CU052_11050 PF04347 Flagellar biosynthesis protein, FliO CU052_11055 PF00813 FliP family CU052_11060 PF01313 Bacterial export proteins, family 3 CU052_11065 PF01311 Bacterial export proteins, family 1 CU052_11070 PF01312 FlhB HrpN YscU SpaS Family CU052_11075 PF00771 FHIPEP family CU052_11080 PF00448 SRP54-type protein, GTPase domain CU052_11085 PF10609 NUBPL iron-transfer P-loop NTPase CU052_11090 PF04545 Sigma-70, region 4 CU052_11090 PF04539 Sigma-70 region 3 CU052_11090 PF04542 Sigma-70 region 2 CU052_11095 PF00072 Response regulator receiver domain CU052_11100 PF04344 Chemotaxis phosphatase, CheZ CU052_11105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_11105 PF02895 Signal transducing histidine kinase, homodimeric domain CU052_11105 PF07194 P2 response regulator binding domain CU052_11105 PF01584 CheW-like domain CU052_11105 PF01627 Hpt domain CU052_11110 PF01339 CheB methylesterase CU052_11110 PF00072 Response regulator receiver domain CU052_11115 PF13614 AAA domain CU052_11125 PF01584 CheW-like domain CU052_11135 PF00005 ABC transporter CU052_11140 PF03379 CcmB protein CU052_11145 PF01578 Cytochrome C assembly protein CU052_11155 PF03100 CcmE CU052_11160 PF01578 Cytochrome C assembly protein CU052_11160 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CU052_11165 PF08534 Redoxin CU052_11170 PF03918 Cytochrome C biogenesis protein CU052_11175 PF03918 Cytochrome C biogenesis protein CU052_11180 PF04333 MlaA lipoprotein CU052_11185 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CU052_11190 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CU052_11200 PF08281 Sigma-70, region 4 CU052_11200 PF04542 Sigma-70 region 2 CU052_11205 PF00108 Thiolase, N-terminal domain CU052_11205 PF02803 Thiolase, C-terminal domain CU052_11210 PF00378 Enoyl-CoA hydratase/isomerase CU052_11210 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CU052_11210 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CU052_11215 PF05193 Peptidase M16 inactive domain CU052_11215 PF00675 Insulinase (Peptidase family M16) CU052_11215 PF16187 Middle or third domain of peptidase_M16 CU052_11220 PF00300 Histidine phosphatase superfamily (branch 1) CU052_11225 PF01713 Smr domain CU052_11230 PF05175 Methyltransferase small domain CU052_11235 PF01264 Chorismate synthase CU052_11240 PF03458 UPF0126 domain CU052_11245 PF04315 Elongation factor P hydroxylase CU052_11250 PF08891 YfcL protein CU052_11260 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CU052_11260 PF01266 FAD dependent oxidoreductase CU052_11265 PF02801 Beta-ketoacyl synthase, C-terminal domain CU052_11265 PF00109 Beta-ketoacyl synthase, N-terminal domain CU052_11275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CU052_11275 PF11890 Domain of unknown function (DUF3410) CU052_11275 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CU052_11280 PF01118 Semialdehyde dehydrogenase, NAD binding domain CU052_11280 PF02774 Semialdehyde dehydrogenase, dimerisation domain CU052_11290 PF01416 tRNA pseudouridine synthase CU052_11300 PF17848 Acetyl-coA carboxylase zinc finger domain CU052_11300 PF01039 Carboxyl transferase domain CU052_11305 PF08245 Mur ligase middle domain CU052_11305 PF02875 Mur ligase family, glutamate ligase domain CU052_11310 PF05036 Sporulation related domain CU052_11315 PF02674 Colicin V production protein CU052_11320 PF00156 Phosphoribosyl transferase domain CU052_11325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_11325 PF03466 LysR substrate binding domain CU052_11330 PF00072 Response regulator receiver domain CU052_11340 PF04304 Protein of unknown function (DUF454) CU052_11345 PF00156 Phosphoribosyl transferase domain CU052_11350 PF12170 DNA polymerase III tau subunit V interacting with alpha CU052_11350 PF12169 DNA polymerase III subunits gamma and tau domain III CU052_11355 PF02575 YbaB/EbfC DNA-binding family CU052_11360 PF02132 RecR protein CU052_11360 PF13662 Toprim domain CU052_11365 PF00230 Major intrinsic protein CU052_11375 PF01042 Endoribonuclease L-PSP CU052_11380 PF03313 Serine dehydratase alpha chain CU052_11385 PF08348 YheO-like PAS domain CU052_11385 PF13309 HTH domain CU052_11390 PF03692 Putative zinc- or iron-chelating domain CU052_11395 PF03692 Putative zinc- or iron-chelating domain CU052_11475 PF01320 Colicin immunity protein / pyocin immunity protein CU052_11480 PF06958 S-type Pyocin CU052_11490 PF00580 UvrD/REP helicase N-terminal domain CU052_11490 PF13361 UvrD-like helicase C-terminal domain CU052_11490 PF12705 PD-(D/E)XK nuclease superfamily CU052_11500 PF04226 Transglycosylase associated protein CU052_11505 PF05552 Conserved TM helix CU052_11505 PF00924 Mechanosensitive ion channel CU052_11510 PF03992 Antibiotic biosynthesis monooxygenase CU052_11515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CU052_11525 PF00245 Alkaline phosphatase CU052_11545 PF13847 Methyltransferase domain CU052_11550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_11550 PF13426 PAS domain CU052_11550 PF08447 PAS fold CU052_11555 PF01156 Inosine-uridine preferring nucleoside hydrolase CU052_11560 PF01263 Aldose 1-epimerase CU052_11565 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CU052_11565 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CU052_11570 PF01641 SelR domain CU052_11580 PF07023 Protein of unknown function (DUF1315) CU052_11585 PF17763 Glutaminase/Asparaginase C-terminal domain CU052_11585 PF00710 Asparaginase, N-terminal CU052_11590 PF01343 Peptidase family S49 CU052_11595 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CU052_11595 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_11600 PF00881 Nitroreductase family CU052_11605 PF01131 DNA topoisomerase CU052_11605 PF01751 Toprim domain CU052_11615 PF00106 short chain dehydrogenase CU052_11620 PF00850 Histone deacetylase domain CU052_11630 PF11893 Domain of unknown function (DUF3413) CU052_11630 PF00884 Sulfatase CU052_11635 PF07208 Protein of unknown function (DUF1414) CU052_11640 PF04245 37-kD nucleoid-associated bacterial protein CU052_11655 PF03553 Na+/H+ antiporter family CU052_11660 PF01118 Semialdehyde dehydrogenase, NAD binding domain CU052_11660 PF02774 Semialdehyde dehydrogenase, dimerisation domain CU052_11665 PF00520 Ion transport protein CU052_11665 PF00027 Cyclic nucleotide-binding domain CU052_11670 PF01914 MarC family integral membrane protein CU052_11675 PF00465 Iron-containing alcohol dehydrogenase CU052_11675 PF00171 Aldehyde dehydrogenase family CU052_11690 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CU052_11690 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CU052_11695 PF00462 Glutaredoxin CU052_11705 PF13726 Na+-H+ antiporter family CU052_11705 PF03553 Na+/H+ antiporter family CU052_11710 PF00929 Exonuclease CU052_11715 PF00691 OmpA family CU052_11715 PF18393 MotY N-terminal domain CU052_11720 PF10952 Protein of unknown function (DUF2753) CU052_11725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CU052_11730 PF00633 Helix-hairpin-helix motif CU052_11730 PF00730 HhH-GPD superfamily base excision DNA repair protein CU052_11730 PF10576 Iron-sulfur binding domain of endonuclease III CU052_11735 PF02508 Rnf-Nqr subunit, membrane protein CU052_11740 PF04205 FMN-binding domain CU052_11745 PF03116 NQR2, RnfD, RnfE family CU052_11750 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CU052_11750 PF12838 4Fe-4S dicluster domain CU052_11750 PF10531 SLBB domain CU052_11750 PF13375 RnfC Barrel sandwich hybrid domain CU052_11755 PF04060 Putative Fe-S cluster CU052_11760 PF02508 Rnf-Nqr subunit, membrane protein CU052_11765 PF02901 Pyruvate formate lyase-like CU052_11765 PF01228 Glycine radical CU052_11775 PF04851 Type III restriction enzyme, res subunit CU052_11775 PF17757 UvrB interaction domain CU052_11775 PF02151 UvrB/uvrC motif CU052_11775 PF00271 Helicase conserved C-terminal domain CU052_11775 PF12344 Ultra-violet resistance protein B CU052_11780 PF00072 Response regulator receiver domain CU052_11780 PF02954 Bacterial regulatory protein, Fis family CU052_11780 PF00158 Sigma-54 interaction domain CU052_11785 PF01627 Hpt domain CU052_11790 PF01933 Uncharacterised protein family UPF0052 CU052_11795 PF06463 Molybdenum Cofactor Synthesis C CU052_11795 PF04055 Radical SAM superfamily CU052_11800 PF00994 Probable molybdopterin binding domain CU052_11805 PF01967 MoaC family CU052_11810 PF02597 ThiS family CU052_11815 PF02391 MoaE protein CU052_11835 PF00528 Binding-protein-dependent transport system inner membrane component CU052_11840 PF00528 Binding-protein-dependent transport system inner membrane component CU052_11840 PF12911 N-terminal TM domain of oligopeptide transport permease C CU052_11845 PF00005 ABC transporter CU052_11845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_11850 PF00005 ABC transporter CU052_11850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_11855 PF13409 Glutathione S-transferase, N-terminal domain CU052_11860 PF13194 Domain of unknown function (DUF4010) CU052_11865 PF07085 DRTGG domain CU052_11865 PF01515 Phosphate acetyl/butaryl transferase CU052_11870 PF00871 Acetokinase family CU052_11875 PF04217 Protein of unknown function, DUF412 CU052_11890 PF02653 Branched-chain amino acid transport system / permease component CU052_11895 PF00005 ABC transporter CU052_11915 PF00990 Diguanylate cyclase, GGDEF domain CU052_11920 PF01207 Dihydrouridine synthase (Dus) CU052_11925 PF02810 SEC-C motif CU052_11925 PF07517 SecA DEAD-like domain CU052_11925 PF07516 SecA Wing and Scaffold domain CU052_11925 PF01043 SecA preprotein cross-linking domain CU052_11930 PF02600 Disulfide bond formation protein DsbB CU052_11935 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CU052_11940 PF00392 Bacterial regulatory proteins, gntR family CU052_11940 PF07840 FadR C-terminal domain CU052_11950 PF01588 Putative tRNA binding domain CU052_11950 PF09334 tRNA synthetases class I (M) CU052_11955 PF10609 NUBPL iron-transfer P-loop NTPase CU052_11960 PF00485 Phosphoribulokinase / Uridine kinase family CU052_11970 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CU052_11970 PF12557 Cob(I)alamin adenosyltransferase N terminal CU052_11975 PF01451 Low molecular weight phosphotyrosine protein phosphatase CU052_11980 PF00916 Sulfate permease family CU052_11980 PF01740 STAS domain CU052_11990 PF00575 S1 RNA binding domain CU052_11990 PF12111 Polyribonucleotide phosphorylase C terminal CU052_11990 PF10150 Ribonuclease E/G family CU052_11995 PF01479 S4 domain CU052_11995 PF00849 RNA pseudouridylate synthase CU052_12000 PF02545 Maf-like protein CU052_12005 PF02620 Large ribosomal RNA subunit accumulation protein YceD CU052_12010 PF01783 Ribosomal L32p protein family CU052_12015 PF02504 Fatty acid synthesis protein CU052_12020 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CU052_12020 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CU052_12025 PF00698 Acyl transferase domain CU052_12035 PF00550 Phosphopantetheine attachment site CU052_12040 PF02801 Beta-ketoacyl synthase, C-terminal domain CU052_12040 PF00109 Beta-ketoacyl synthase, N-terminal domain CU052_12045 PF01063 Amino-transferase class IV CU052_12050 PF02618 YceG-like family CU052_12055 PF02223 Thymidylate kinase CU052_12060 PF09115 DNA polymerase III, delta subunit, C terminal CU052_12065 PF01026 TatD related DNase CU052_12070 PF00367 phosphotransferase system, EIIB CU052_12070 PF02378 Phosphotransferase system, EIIC CU052_12085 PF00209 Sodium:neurotransmitter symporter family CU052_12100 PF01734 Patatin-like phospholipase CU052_12105 PF00224 Pyruvate kinase, barrel domain CU052_12105 PF02887 Pyruvate kinase, alpha/beta domain CU052_12110 PF00480 ROK family CU052_12115 PF00072 Response regulator receiver domain CU052_12115 PF01584 CheW-like domain CU052_12120 PF02811 PHP domain CU052_12120 PF14579 Helix-hairpin-helix motif CU052_12120 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CU052_12120 PF01336 OB-fold nucleic acid binding domain CU052_12120 PF07733 Bacterial DNA polymerase III alpha NTPase domain CU052_12145 PF00873 AcrB/AcrD/AcrF family CU052_12155 PF00106 short chain dehydrogenase CU052_12160 PF01343 Peptidase family S49 CU052_12160 PF08496 Peptidase family S49 N-terminal CU052_12165 PF02224 Cytidylate kinase CU052_12170 PF00575 S1 RNA binding domain CU052_12175 PF00216 Bacterial DNA-binding protein CU052_12180 PF06305 Lipopolysaccharide assembly protein A domain CU052_12185 PF18073 Rubredoxin metal binding domain CU052_12190 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CU052_12195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CU052_12250 PF03886 ABC-type transport auxiliary lipoprotein component CU052_12255 PF02470 MlaD protein CU052_12260 PF04403 Paraquat-inducible protein A CU052_12265 PF03466 LysR substrate binding domain CU052_12265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_12275 PF02683 Cytochrome C biogenesis protein transmembrane region CU052_12275 PF11412 Disulphide bond corrector protein DsbC CU052_12280 PF00085 Thioredoxin CU052_12310 PF00583 Acetyltransferase (GNAT) family CU052_12315 PF00440 Bacterial regulatory proteins, tetR family CU052_12325 PF13533 Biotin-lipoyl like CU052_12335 PF12704 MacB-like periplasmic core domain CU052_12335 PF02687 FtsX-like permease family CU052_12340 PF00005 ABC transporter CU052_12340 PF12704 MacB-like periplasmic core domain CU052_12340 PF02687 FtsX-like permease family CU052_12345 PF12704 MacB-like periplasmic core domain CU052_12345 PF02687 FtsX-like permease family CU052_12345 PF00005 ABC transporter CU052_12375 PF01717 Cobalamin-independent synthase, Catalytic domain CU052_12375 PF08267 Cobalamin-independent synthase, N-terminal domain CU052_12390 PF01047 MarR family CU052_12400 PF00529 HlyD membrane-fusion protein of T1SS CU052_12400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_12405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_12405 PF03466 LysR substrate binding domain CU052_12425 PF00512 His Kinase A (phospho-acceptor) domain CU052_12425 PF00672 HAMP domain CU052_12425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_12430 PF00486 Transcriptional regulatory protein, C terminal CU052_12430 PF00072 Response regulator receiver domain CU052_12435 PF00535 Glycosyl transferase family 2 CU052_12440 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CU052_12465 PF08348 YheO-like PAS domain CU052_12465 PF13309 HTH domain CU052_12470 PF01042 Endoribonuclease L-PSP CU052_12475 PF00375 Sodium:dicarboxylate symporter family CU052_12480 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_12480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CU052_12520 PF11842 Domain of unknown function (DUF3362) CU052_12520 PF04055 Radical SAM superfamily CU052_12520 PF08497 Radical SAM N-terminal CU052_12525 PF00563 EAL domain CU052_12525 PF00498 FHA domain CU052_12525 PF00990 Diguanylate cyclase, GGDEF domain CU052_12540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_12540 PF03466 LysR substrate binding domain CU052_12545 PF08267 Cobalamin-independent synthase, N-terminal domain CU052_12545 PF01717 Cobalamin-independent synthase, Catalytic domain CU052_12555 PF03795 YCII-related domain CU052_12560 PF03061 Thioesterase superfamily CU052_12565 PF04279 Intracellular septation protein A CU052_12575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_12575 PF00072 Response regulator receiver domain CU052_12580 PF17327 Acyl homoserine lactone synthase CU052_12585 PF00375 Sodium:dicarboxylate symporter family CU052_12590 PF00290 Tryptophan synthase alpha chain CU052_12595 PF00291 Pyridoxal-phosphate dependent enzyme CU052_12600 PF00218 Indole-3-glycerol phosphate synthase CU052_12600 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CU052_12605 PF00591 Glycosyl transferase family, a/b domain CU052_12605 PF02885 Glycosyl transferase family, helical bundle domain CU052_12610 PF00117 Glutamine amidotransferase class-I CU052_12615 PF04715 Anthranilate synthase component I, N terminal region CU052_12615 PF00425 chorismate binding enzyme CU052_12620 PF08056 Tryptophan operon leader peptide CU052_12625 PF02811 PHP domain CU052_12630 PF01300 Telomere recombination CU052_12640 PF00849 RNA pseudouridylate synthase CU052_12640 PF01479 S4 domain CU052_12645 PF04269 Protein of unknown function, DUF440 CU052_12650 PF09285 Elongation factor P, C-terminal CU052_12650 PF01132 Elongation factor P (EF-P) OB domain CU052_12650 PF08207 Elongation factor P (EF-P) KOW-like domain CU052_12660 PF03104 DNA polymerase family B, exonuclease domain CU052_12660 PF00136 DNA polymerase family B CU052_12665 PF00196 Bacterial regulatory proteins, luxR family CU052_12665 PF00072 Response regulator receiver domain CU052_12670 PF02151 UvrB/uvrC motif CU052_12670 PF01541 GIY-YIG catalytic domain CU052_12670 PF08459 UvrC Helix-hairpin-helix N-terminal CU052_12675 PF01066 CDP-alcohol phosphatidyltransferase CU052_12705 PF00202 Aminotransferase class-III CU052_12710 PF16653 Saccharopine dehydrogenase C-terminal domain CU052_12710 PF03435 Saccharopine dehydrogenase NADP binding domain CU052_12715 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CU052_12730 PF00994 Probable molybdopterin binding domain CU052_12740 PF00268 Ribonucleotide reductase, small chain CU052_12745 PF02867 Ribonucleotide reductase, barrel domain CU052_12745 PF03477 ATP cone domain CU052_12745 PF00317 Ribonucleotide reductase, all-alpha domain CU052_12760 PF03989 DNA gyrase C-terminal domain, beta-propeller CU052_12760 PF00521 DNA gyrase/topoisomerase IV, subunit A CU052_12775 PF02335 Cytochrome c552 CU052_12785 PF13247 4Fe-4S dicluster domain CU052_12790 PF03916 Polysulphide reductase, NrfD CU052_12795 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CU052_12795 PF01578 Cytochrome C assembly protein CU052_12800 PF08534 Redoxin CU052_12805 PF03918 Cytochrome C biogenesis protein CU052_12815 PF00925 GTP cyclohydrolase II CU052_12840 PF01471 Putative peptidoglycan binding domain CU052_12840 PF03734 L,D-transpeptidase catalytic domain CU052_12845 PF05951 Bacterial protein of unknown function (DUF882) CU052_12850 PF00753 Metallo-beta-lactamase superfamily CU052_12865 PF03480 Bacterial extracellular solute-binding protein, family 7 CU052_12875 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CU052_12880 PF07730 Histidine kinase CU052_12880 PF17200 Single Cache domain 2 CU052_12885 PF00072 Response regulator receiver domain CU052_12885 PF00196 Bacterial regulatory proteins, luxR family CU052_12890 PF01047 MarR family CU052_12895 PF02028 BCCT, betaine/carnitine/choline family transporter CU052_12900 PF00672 HAMP domain CU052_12900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_12920 PF00155 Aminotransferase class I and II CU052_12925 PF01966 HD domain CU052_12925 PF00672 HAMP domain CU052_12960 PF00152 tRNA synthetases class II (D, K and N) CU052_12960 PF01336 OB-fold nucleic acid binding domain CU052_12965 PF17200 Single Cache domain 2 CU052_12965 PF00672 HAMP domain CU052_12965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_12970 PF01242 6-pyruvoyl tetrahydropterin synthase CU052_12975 PF00196 Bacterial regulatory proteins, luxR family CU052_12975 PF00072 Response regulator receiver domain CU052_12985 PF00563 EAL domain CU052_12985 PF00990 Diguanylate cyclase, GGDEF domain CU052_12985 PF03707 Bacterial signalling protein N terminal repeat CU052_12985 PF13188 PAS domain CU052_12990 PF03313 Serine dehydratase alpha chain CU052_12990 PF03315 Serine dehydratase beta chain CU052_12995 PF03222 Tryptophan/tyrosine permease family CU052_13000 PF00293 NUDIX domain CU052_13010 PF00072 Response regulator receiver domain CU052_13010 PF00512 His Kinase A (phospho-acceptor) domain CU052_13010 PF09308 LuxQ, periplasmic CU052_13010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_13015 PF00425 chorismate binding enzyme CU052_13015 PF04715 Anthranilate synthase component I, N terminal region CU052_13030 PF04317 YcjX-like family, DUF463 CU052_13035 PF05128 Domain of unknown function (DUF697) CU052_13040 PF18024 Helix-turn-helix domain CU052_13040 PF00158 Sigma-54 interaction domain CU052_13045 PF13302 Acetyltransferase (GNAT) domain CU052_13060 PF00589 Phage integrase family CU052_13060 PF13495 Phage integrase, N-terminal SAM-like domain CU052_13185 PF01259 SAICAR synthetase CU052_13205 PF00691 OmpA family CU052_13205 PF05736 OprF membrane domain CU052_13220 PF02913 FAD linked oxidases, C-terminal domain CU052_13220 PF13183 4Fe-4S dicluster domain CU052_13220 PF01565 FAD binding domain CU052_13235 PF00221 Aromatic amino acid lyase CU052_13240 PF17392 Urocanase C-terminal domain CU052_13240 PF01175 Urocanase Rossmann-like domain CU052_13240 PF17391 Urocanase N-terminal domain CU052_13245 PF00491 Arginase family CU052_13250 PF01979 Amidohydrolase family CU052_13255 PF07702 UTRA domain CU052_13255 PF00392 Bacterial regulatory proteins, gntR family CU052_13270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CU052_13270 PF02824 TGS domain CU052_13270 PF03129 Anticodon binding domain CU052_13270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CU052_13275 PF00707 Translation initiation factor IF-3, C-terminal domain CU052_13275 PF05198 Translation initiation factor IF-3, N-terminal domain CU052_13280 PF01632 Ribosomal protein L35 CU052_13285 PF00453 Ribosomal protein L20 CU052_13290 PF01042 Endoribonuclease L-PSP CU052_13295 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CU052_13300 PF01906 Putative heavy-metal-binding CU052_13365 PF01381 Helix-turn-helix CU052_13365 PF00717 Peptidase S24-like CU052_13445 PF17288 Terminase RNAseH like domain CU052_13445 PF04466 Phage terminase large subunit CU052_13450 PF06381 Protein of unknown function (DUF1073) CU052_13600 PF00990 Diguanylate cyclase, GGDEF domain CU052_13600 PF00072 Response regulator receiver domain CU052_13605 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CU052_13605 PF01409 tRNA synthetases class II core domain (F) CU052_13610 PF01588 Putative tRNA binding domain CU052_13610 PF03483 B3/4 domain CU052_13610 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CU052_13610 PF03484 tRNA synthetase B5 domain CU052_13610 PF03147 Ferredoxin-fold anticodon binding domain CU052_13650 PF00216 Bacterial DNA-binding protein CU052_13660 PF05724 Thiopurine S-methyltransferase (TPMT) CU052_13665 PF02222 ATP-grasp domain CU052_13670 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CU052_13670 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CU052_13675 PF04172 LrgB-like family CU052_13680 PF03788 LrgA family CU052_13685 PF00929 Exonuclease CU052_13685 PF08411 Exonuclease C-terminal CU052_13690 PF07883 Cupin domain CU052_13695 PF01810 LysE type translocator CU052_13700 PF01177 Asp/Glu/Hydantoin racemase CU052_13725 PF13460 NAD(P)H-binding CU052_13730 PF01613 Flavin reductase like domain CU052_13735 PF02277 Phosphoribosyltransferase CU052_13740 PF02654 Cobalamin-5-phosphate synthase CU052_13745 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CU052_13750 PF00300 Histidine phosphatase superfamily (branch 1) CU052_13760 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CU052_13765 PF01032 FecCD transport family CU052_13770 PF00005 ABC transporter CU052_13820 PF07690 Major Facilitator Superfamily CU052_13825 PF03466 LysR substrate binding domain CU052_13825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_13850 PF07963 Prokaryotic N-terminal methylation motif CU052_13850 PF08334 Type II secretion system (T2SS), protein G CU052_13855 PF01863 Protein of unknown function DUF45 CU052_13860 PF05971 RNA methyltransferase CU052_13865 PF00990 Diguanylate cyclase, GGDEF domain CU052_13865 PF00072 Response regulator receiver domain CU052_13875 PF00392 Bacterial regulatory proteins, gntR family CU052_13880 PF00171 Aldehyde dehydrogenase family CU052_13885 PF05544 Proline racemase CU052_13890 PF01266 FAD dependent oxidoreductase CU052_13900 PF02423 Ornithine cyclodeaminase/mu-crystallin family CU052_13905 PF00701 Dihydrodipicolinate synthetase family CU052_13910 PF08402 TOBE domain CU052_13910 PF00005 ABC transporter CU052_13915 PF00528 Binding-protein-dependent transport system inner membrane component CU052_13920 PF00528 Binding-protein-dependent transport system inner membrane component CU052_13925 PF01048 Phosphorylase superfamily CU052_13945 PF00529 HlyD membrane-fusion protein of T1SS CU052_13945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_13950 PF00873 AcrB/AcrD/AcrF family CU052_13960 PF00072 Response regulator receiver domain CU052_13960 PF00486 Transcriptional regulatory protein, C terminal CU052_13965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_13965 PF00512 His Kinase A (phospho-acceptor) domain CU052_13995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_13995 PF00005 ABC transporter CU052_14000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_14000 PF00005 ABC transporter CU052_14005 PF00528 Binding-protein-dependent transport system inner membrane component CU052_14005 PF12911 N-terminal TM domain of oligopeptide transport permease C CU052_14010 PF00528 Binding-protein-dependent transport system inner membrane component CU052_14015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CU052_14020 PF01546 Peptidase family M20/M25/M40 CU052_14020 PF07687 Peptidase dimerisation domain CU052_14030 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CU052_14035 PF04209 homogentisate 1,2-dioxygenase CU052_14045 PF02798 Glutathione S-transferase, N-terminal domain CU052_14045 PF14497 Glutathione S-transferase, C-terminal domain CU052_14100 PF00293 NUDIX domain CU052_14115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CU052_14140 PF00072 Response regulator receiver domain CU052_14140 PF12431 Transcriptional regulator CU052_14145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_14145 PF17203 Single cache domain 3 CU052_14150 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CU052_14155 PF02436 Conserved carboxylase domain CU052_14155 PF00364 Biotin-requiring enzyme CU052_14155 PF00682 HMGL-like CU052_14160 PF04277 Oxaloacetate decarboxylase, gamma chain CU052_14165 PF03390 2-hydroxycarboxylate transporter family CU052_14170 PF08218 Citrate lyase ligase C-terminal domain CU052_14175 PF06857 Malonate decarboxylase delta subunit (MdcD) CU052_14180 PF03328 HpcH/HpaI aldolase/citrate lyase family CU052_14185 PF04223 Citrate lyase, alpha subunit (CitF) CU052_14190 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CU052_14195 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CU052_14225 PF01590 GAF domain CU052_14225 PF02954 Bacterial regulatory protein, Fis family CU052_14225 PF00158 Sigma-54 interaction domain CU052_14230 PF00171 Aldehyde dehydrogenase family CU052_14235 PF01235 Sodium:alanine symporter family CU052_14270 PF00884 Sulfatase CU052_14280 PF14319 Transposase zinc-binding domain CU052_14280 PF04986 Putative transposase CU052_14295 PF04151 Bacterial pre-peptidase C-terminal domain CU052_14295 PF00082 Subtilase family CU052_14295 PF05922 Peptidase inhibitor I9 CU052_14300 PF03466 LysR substrate binding domain CU052_14300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_14315 PF01810 LysE type translocator CU052_14320 PF07729 FCD domain CU052_14320 PF00392 Bacterial regulatory proteins, gntR family CU052_14360 PF00174 Oxidoreductase molybdopterin binding domain CU052_14365 PF01794 Ferric reductase like transmembrane component CU052_14380 PF08534 Redoxin CU052_14385 PF02630 SCO1/SenC CU052_14400 PF03264 NapC/NirT cytochrome c family, N-terminal region CU052_14420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_14420 PF03466 LysR substrate binding domain CU052_14435 PF00580 UvrD/REP helicase N-terminal domain CU052_14435 PF13361 UvrD-like helicase C-terminal domain CU052_14450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_14465 PF17203 Single cache domain 3 CU052_14465 PF00989 PAS fold CU052_14465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_14465 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CU052_14470 PF00072 Response regulator receiver domain CU052_14470 PF12431 Transcriptional regulator CU052_14475 PF07715 TonB-dependent Receptor Plug Domain CU052_14475 PF00593 TonB dependent receptor CU052_14480 PF12833 Helix-turn-helix domain CU052_14485 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CU052_14485 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CU052_14490 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CU052_14495 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CU052_14495 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CU052_14530 PF11999 Protein of unknown function (DUF3494) CU052_14530 PF02368 Bacterial Ig-like domain (group 2) CU052_14535 PF13677 Membrane MotB of proton-channel complex MotA/MotB CU052_14535 PF00691 OmpA family CU052_14545 PF02796 Helix-turn-helix domain of resolvase CU052_14545 PF00239 Resolvase, N terminal domain CU052_14565 PF04151 Bacterial pre-peptidase C-terminal domain CU052_14565 PF01752 Collagenase CU052_14565 PF08453 Peptidase family M9 N-terminal CU052_14575 PF12833 Helix-turn-helix domain CU052_14580 PF03466 LysR substrate binding domain CU052_14580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_14600 PF00263 Bacterial type II and III secretion system protein CU052_14600 PF13629 Pilus formation protein N terminal region CU052_14600 PF04972 BON domain CU052_14615 PF00437 Type II/IV secretion system protein CU052_14650 PF00691 OmpA family CU052_14650 PF05736 OprF membrane domain CU052_14665 PF17785 PUA-like domain CU052_14665 PF10672 S-adenosylmethionine-dependent methyltransferase CU052_14670 PF02743 Cache domain CU052_14670 PF00672 HAMP domain CU052_14670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_14675 PF00708 Acylphosphatase CU052_14680 PF04358 DsrC like protein CU052_14685 PF01027 Inhibitor of apoptosis-promoting Bax1 CU052_14690 PF00005 ABC transporter CU052_14695 PF00528 Binding-protein-dependent transport system inner membrane component CU052_14700 PF00528 Binding-protein-dependent transport system inner membrane component CU052_14705 PF00497 Bacterial extracellular solute-binding proteins, family 3 CU052_14715 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CU052_14715 PF14824 Sirohaem biosynthesis protein central CU052_14715 PF10414 Sirohaem synthase dimerisation region CU052_14720 PF04461 Protein of unknown function (DUF520) CU052_14725 PF00793 DAHP synthetase I family CU052_14750 PF01189 16S rRNA methyltransferase RsmB/F CU052_14750 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CU052_14750 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CU052_14755 PF02470 MlaD protein CU052_14760 PF04403 Paraquat-inducible protein A CU052_14765 PF00005 ABC transporter CU052_14765 PF00664 ABC transporter transmembrane region CU052_14770 PF13185 GAF domain CU052_14775 PF17516 ProQ C-terminal domain CU052_14775 PF04352 ProQ/FINO family CU052_14780 PF11818 C-terminal domain of tail specific protease (DUF3340) CU052_14780 PF00595 PDZ domain CU052_14780 PF17804 Tail specific protease N-terminal domain CU052_14780 PF03572 Peptidase family S41 CU052_14790 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CU052_14790 PF11940 Domain of unknown function (DUF3458) Ig-like fold CU052_14790 PF01433 Peptidase family M1 domain CU052_14800 PF05088 Bacterial NAD-glutamate dehydrogenase CU052_14810 PF01180 Dihydroorotate dehydrogenase CU052_14815 PF07126 Cell-division protein ZapC CU052_14820 PF10672 S-adenosylmethionine-dependent methyltransferase CU052_14820 PF02926 THUMP domain CU052_14820 PF01170 Putative RNA methylase family UPF0020 CU052_14840 PF04957 Ribosome modulation factor CU052_14845 PF07977 FabA-like domain CU052_14850 PF05362 Lon protease (S16) C-terminal proteolytic domain CU052_14850 PF13654 AAA domain CU052_14855 PF06303 MatP N-terminal domain CU052_14855 PF17414 MatP C-terminal ribbon-helix-helix domain CU052_14885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_14885 PF00512 His Kinase A (phospho-acceptor) domain CU052_14885 PF09308 LuxQ, periplasmic CU052_14885 PF00072 Response regulator receiver domain CU052_14900 PF00115 Cytochrome C and Quinol oxidase polypeptide I CU052_14915 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CU052_14915 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CU052_14925 PF00403 Heavy-metal-associated domain CU052_14940 PF00027 Cyclic nucleotide-binding domain CU052_14940 PF13545 Crp-like helix-turn-helix domain CU052_14945 PF00582 Universal stress protein family CU052_14950 PF01171 PP-loop family CU052_14960 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CU052_14970 PF00005 ABC transporter CU052_14970 PF08402 TOBE domain CU052_14975 PF00528 Binding-protein-dependent transport system inner membrane component CU052_14980 PF00528 Binding-protein-dependent transport system inner membrane component CU052_14985 PF13416 Bacterial extracellular solute-binding protein CU052_14990 PF13416 Bacterial extracellular solute-binding protein CU052_14995 PF02146 Sir2 family CU052_15015 PF13247 4Fe-4S dicluster domain CU052_15020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CU052_15020 PF00384 Molybdopterin oxidoreductase CU052_15020 PF01568 Molydopterin dinucleotide binding domain CU052_15030 PF02613 Nitrate reductase delta subunit CU052_15050 PF02634 FdhD/NarQ family CU052_15055 PF00005 ABC transporter CU052_15055 PF12848 ABC transporter CU052_15075 PF00512 His Kinase A (phospho-acceptor) domain CU052_15075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_15090 PF08402 TOBE domain CU052_15090 PF00005 ABC transporter CU052_15095 PF12804 MobA-like NTP transferase domain CU052_15100 PF00994 Probable molybdopterin binding domain CU052_15100 PF03454 MoeA C-terminal region (domain IV) CU052_15100 PF03453 MoeA N-terminal region (domain I and II) CU052_15110 PF00480 ROK family CU052_15165 PF00672 HAMP domain CU052_15165 PF12729 Four helix bundle sensory module for signal transduction CU052_15165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_15170 PF00877 NlpC/P60 family CU052_15180 PF00990 Diguanylate cyclase, GGDEF domain CU052_15180 PF05230 MASE2 domain CU052_15185 PF00072 Response regulator receiver domain CU052_15185 PF01339 CheB methylesterase CU052_15200 PF00677 Lumazine binding domain CU052_15205 PF01554 MatE CU052_15215 PF14743 DNA ligase OB-like domain CU052_15215 PF01068 ATP dependent DNA ligase domain CU052_15220 PF01740 STAS domain CU052_15230 PF10531 SLBB domain CU052_15230 PF02563 Polysaccharide biosynthesis/export protein CU052_15245 PF00158 Sigma-54 interaction domain CU052_15245 PF02954 Bacterial regulatory protein, Fis family CU052_15245 PF00072 Response regulator receiver domain CU052_15285 PF00534 Glycosyl transferases group 1 CU052_15285 PF13439 Glycosyltransferase Family 4 CU052_15290 PF00535 Glycosyl transferase family 2 CU052_15295 PF02397 Bacterial sugar transferase CU052_15305 PF13322 Domain of unknown function (DUF4092) CU052_15305 PF17291 N-terminal domain of M60-like peptidases CU052_15305 PF13402 Peptidase M60, enhancin and enhancin-like CU052_15325 PF00691 OmpA family CU052_15325 PF05736 OprF membrane domain CU052_15335 PF00990 Diguanylate cyclase, GGDEF domain CU052_15335 PF13185 GAF domain CU052_15340 PF06508 Queuosine biosynthesis protein QueC CU052_15345 PF04055 Radical SAM superfamily CU052_15360 PF00089 Trypsin CU052_15370 PF16177 Acetyl-coenzyme A synthetase N-terminus CU052_15370 PF13193 AMP-binding enzyme C-terminal domain CU052_15370 PF00501 AMP-binding enzyme CU052_15375 PF04303 PrpF protein CU052_15380 PF00694 Aconitase C-terminal domain CU052_15380 PF00330 Aconitase family (aconitate hydratase) CU052_15385 PF00285 Citrate synthase, C-terminal domain CU052_15405 PF16671 Actin cross-linking domain CU052_15405 PF04717 Type VI secretion system, phage-baseplate injector CU052_15460 PF17871 AAA lid domain CU052_15460 PF07724 AAA domain (Cdc48 subfamily) CU052_15460 PF00004 ATPase family associated with various cellular activities (AAA) CU052_15460 PF10431 C-terminal, D2-small domain, of ClpB protein CU052_15495 PF00069 Protein kinase domain CU052_15495 PF03793 PASTA domain CU052_15510 PF00583 Acetyltransferase (GNAT) family CU052_15530 PF01970 Tripartite tricarboxylate transporter TctA family CU052_15535 PF01925 Sulfite exporter TauE/SafE CU052_15540 PF16868 NMT1-like family CU052_15560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_15560 PF00529 HlyD membrane-fusion protein of T1SS CU052_15570 PF01810 LysE type translocator CU052_15605 PF00196 Bacterial regulatory proteins, luxR family CU052_15605 PF00072 Response regulator receiver domain CU052_15610 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CU052_15620 PF01047 MarR family CU052_15635 PF03279 Bacterial lipid A biosynthesis acyltransferase CU052_15640 PF03466 LysR substrate binding domain CU052_15640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_15645 PF01810 LysE type translocator CU052_15650 PF13520 Amino acid permease CU052_15655 PF00893 Small Multidrug Resistance protein CU052_15670 PF04204 Homoserine O-succinyltransferase CU052_15700 PF11898 Domain of unknown function (DUF3418) CU052_15700 PF00271 Helicase conserved C-terminal domain CU052_15700 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CU052_15700 PF00270 DEAD/DEAH box helicase CU052_15700 PF04408 Helicase associated domain (HA2) CU052_15705 PF02525 Flavodoxin-like fold CU052_15715 PF02613 Nitrate reductase delta subunit CU052_15720 PF04976 DMSO reductase anchor subunit (DmsC) CU052_15725 PF13247 4Fe-4S dicluster domain CU052_15725 PF12800 4Fe-4S binding domain CU052_15730 PF00384 Molybdopterin oxidoreductase CU052_15730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CU052_15730 PF01568 Molydopterin dinucleotide binding domain CU052_15760 PF00990 Diguanylate cyclase, GGDEF domain CU052_15770 PF00012 Hsp70 protein CU052_15775 PF00012 Hsp70 protein CU052_15790 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CU052_15790 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CU052_15800 PF03466 LysR substrate binding domain CU052_15800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_15810 PF07963 Prokaryotic N-terminal methylation motif CU052_15810 PF00114 Pilin (bacterial filament) CU052_15815 PF00005 ABC transporter CU052_15815 PF00664 ABC transporter transmembrane region CU052_15820 PF00664 ABC transporter transmembrane region CU052_15820 PF00005 ABC transporter CU052_15835 PF07715 TonB-dependent Receptor Plug Domain CU052_15835 PF00593 TonB dependent receptor CU052_15840 PF01032 FecCD transport family CU052_15845 PF01497 Periplasmic binding protein CU052_15850 PF00005 ABC transporter CU052_15865 PF03222 Tryptophan/tyrosine permease family CU052_15870 PF00465 Iron-containing alcohol dehydrogenase CU052_15880 PF00990 Diguanylate cyclase, GGDEF domain CU052_15880 PF17158 Membrane-associated sensor, integral membrane domain CU052_15885 PF00106 short chain dehydrogenase CU052_15890 PF01966 HD domain CU052_15900 PF03741 Integral membrane protein TerC family CU052_15905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_15905 PF03466 LysR substrate binding domain CU052_15910 PF04055 Radical SAM superfamily CU052_15915 PF11230 Protein of unknown function (DUF3029) CU052_15920 PF01810 LysE type translocator CU052_15925 PF11871 Domain of unknown function (DUF3391) CU052_15925 PF01966 HD domain CU052_15930 PF00990 Diguanylate cyclase, GGDEF domain CU052_15930 PF03707 Bacterial signalling protein N terminal repeat CU052_15930 PF00563 EAL domain CU052_15935 PF00072 Response regulator receiver domain CU052_15935 PF02954 Bacterial regulatory protein, Fis family CU052_15935 PF00158 Sigma-54 interaction domain CU052_15940 PF00497 Bacterial extracellular solute-binding proteins, family 3 CU052_15940 PF00512 His Kinase A (phospho-acceptor) domain CU052_15940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_15945 PF00939 Sodium:sulfate symporter transmembrane region CU052_15975 PF16655 PhoD-like phosphatase, N-terminal domain CU052_15975 PF09423 PhoD-like phosphatase CU052_15990 PF00270 DEAD/DEAH box helicase CU052_15990 PF00271 Helicase conserved C-terminal domain CU052_15990 PF04408 Helicase associated domain (HA2) CU052_15990 PF08482 ATP-dependent helicase C-terminal CU052_15995 PF00390 Malic enzyme, N-terminal domain CU052_15995 PF03949 Malic enzyme, NAD binding domain CU052_16000 PF02698 DUF218 domain CU052_16005 PF00939 Sodium:sulfate symporter transmembrane region CU052_16010 PF00990 Diguanylate cyclase, GGDEF domain CU052_16010 PF08448 PAS fold CU052_16020 PF00266 Aminotransferase class-V CU052_16030 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_16035 PF00005 ABC transporter CU052_16035 PF00664 ABC transporter transmembrane region CU052_16040 PF00005 ABC transporter CU052_16040 PF00664 ABC transporter transmembrane region CU052_16045 PF00291 Pyridoxal-phosphate dependent enzyme CU052_16050 PF02447 GntP family permease CU052_16055 PF03466 LysR substrate binding domain CU052_16055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_16075 PF00563 EAL domain CU052_16075 PF13426 PAS domain CU052_16075 PF00990 Diguanylate cyclase, GGDEF domain CU052_16075 PF08448 PAS fold CU052_16075 PF08447 PAS fold CU052_16075 PF05231 MASE1 CU052_16085 PF00266 Aminotransferase class-V CU052_16095 PF00497 Bacterial extracellular solute-binding proteins, family 3 CU052_16095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_16095 PF00512 His Kinase A (phospho-acceptor) domain CU052_16110 PF04994 TfoX C-terminal domain CU052_16110 PF04993 TfoX N-terminal domain CU052_16125 PF03956 Lysine exporter LysO CU052_16135 PF00282 Pyridoxal-dependent decarboxylase conserved domain CU052_16140 PF01380 SIS domain CU052_16140 PF01418 Helix-turn-helix domain, rpiR family CU052_16145 PF00465 Iron-containing alcohol dehydrogenase CU052_16150 PF00462 Glutaredoxin CU052_16155 PF06826 Predicted Permease Membrane Region CU052_16155 PF02080 TrkA-C domain CU052_16160 PF07055 Enoyl reductase FAD binding domain CU052_16160 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CU052_16160 PF12241 Trans-2-enoyl-CoA reductase catalytic region CU052_16165 PF09317 Domain of unknown function (DUF1974) CU052_16165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CU052_16165 PF02770 Acyl-CoA dehydrogenase, middle domain CU052_16165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CU052_16170 PF16295 Tetracyclin repressor-like, C-terminal domain CU052_16170 PF00440 Bacterial regulatory proteins, tetR family CU052_16175 PF06965 Na+/H+ antiporter 1 CU052_16190 PF00005 ABC transporter CU052_16195 PF01554 MatE CU052_16200 PF11066 Protein of unknown function (DUF2867) CU052_16200 PF13460 NAD(P)H-binding CU052_16205 PF00356 Bacterial regulatory proteins, lacI family CU052_16210 PF16874 Glycosyl hydrolase family 36 C-terminal domain CU052_16210 PF16875 Glycosyl hydrolase family 36 N-terminal domain CU052_16215 PF00474 Sodium:solute symporter family CU052_16225 PF07690 Major Facilitator Superfamily CU052_16230 PF01479 S4 domain CU052_16230 PF00849 RNA pseudouridylate synthase CU052_16235 PF04851 Type III restriction enzyme, res subunit CU052_16235 PF00271 Helicase conserved C-terminal domain CU052_16245 PF00486 Transcriptional regulatory protein, C terminal CU052_16245 PF00072 Response regulator receiver domain CU052_16250 PF16527 Two-component sensor protein CpxA, periplasmic domain CU052_16250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_16250 PF00672 HAMP domain CU052_16250 PF00512 His Kinase A (phospho-acceptor) domain CU052_16260 PF02709 N-terminal domain of galactosyltransferase CU052_16260 PF00535 Glycosyl transferase family 2 CU052_16270 PF01386 Ribosomal L25p family CU052_16285 PF00149 Calcineurin-like phosphoesterase CU052_16285 PF02872 5'-nucleotidase, C-terminal domain CU052_16295 PF06945 Protein of unknown function (DUF1289) CU052_16305 PF00916 Sulfate permease family CU052_16305 PF01740 STAS domain CU052_16315 PF00196 Bacterial regulatory proteins, luxR family CU052_16315 PF00072 Response regulator receiver domain CU052_16320 PF00512 His Kinase A (phospho-acceptor) domain CU052_16320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_16330 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CU052_16330 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CU052_16330 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_16340 PF09335 SNARE associated Golgi protein CU052_16345 PF13416 Bacterial extracellular solute-binding protein CU052_16350 PF00528 Binding-protein-dependent transport system inner membrane component CU052_16355 PF00005 ABC transporter CU052_16360 PF01066 CDP-alcohol phosphatidyltransferase CU052_16365 PF00158 Sigma-54 interaction domain CU052_16365 PF01590 GAF domain CU052_16370 PF03063 Prismane/CO dehydrogenase family CU052_16375 PF00111 2Fe-2S iron-sulfur cluster binding domain CU052_16375 PF00970 Oxidoreductase FAD-binding domain CU052_16375 PF00175 Oxidoreductase NAD-binding domain CU052_16385 PF00849 RNA pseudouridylate synthase CU052_16390 PF12729 Four helix bundle sensory module for signal transduction CU052_16390 PF00672 HAMP domain CU052_16390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_16395 PF00209 Sodium:neurotransmitter symporter family CU052_16400 PF13396 Phospholipase_D-nuclease N-terminal CU052_16400 PF13091 PLD-like domain CU052_16405 PF01053 Cys/Met metabolism PLP-dependent enzyme CU052_16410 PF00561 alpha/beta hydrolase fold CU052_16420 PF03352 Methyladenine glycosylase CU052_16425 PF00873 AcrB/AcrD/AcrF family CU052_16430 PF13533 Biotin-lipoyl like CU052_16445 PF06667 Phage shock protein B CU052_16450 PF04012 PspA/IM30 family CU052_16455 PF02954 Bacterial regulatory protein, Fis family CU052_16455 PF00158 Sigma-54 interaction domain CU052_16460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CU052_16465 PF00528 Binding-protein-dependent transport system inner membrane component CU052_16470 PF12911 N-terminal TM domain of oligopeptide transport permease C CU052_16470 PF00528 Binding-protein-dependent transport system inner membrane component CU052_16475 PF00005 ABC transporter CU052_16475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_16480 PF00005 ABC transporter CU052_16490 PF02833 DHHA2 domain CU052_16490 PF01368 DHH family CU052_16495 PF00950 ABC 3 transport family CU052_16500 PF00950 ABC 3 transport family CU052_16505 PF00005 ABC transporter CU052_16510 PF01297 Zinc-uptake complex component A periplasmic CU052_16515 PF16875 Glycosyl hydrolase family 36 N-terminal domain CU052_16515 PF16874 Glycosyl hydrolase family 36 C-terminal domain CU052_16520 PF01568 Molydopterin dinucleotide binding domain CU052_16520 PF00384 Molybdopterin oxidoreductase CU052_16520 PF18364 Molybdopterin oxidoreductase N-terminal domain CU052_16525 PF03264 NapC/NirT cytochrome c family, N-terminal region CU052_16530 PF06796 Periplasmic nitrate reductase protein NapE CU052_16535 PF03649 Uncharacterised protein family (UPF0014) CU052_16540 PF01226 Formate/nitrite transporter CU052_16570 PF00265 Thymidine kinase CU052_16575 PF01406 tRNA synthetases class I (C) catalytic domain CU052_16575 PF09190 DALR domain CU052_16580 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CU052_16585 PF00149 Calcineurin-like phosphoesterase CU052_16590 PF08668 HDOD domain CU052_16590 PF00563 EAL domain CU052_16595 PF02810 SEC-C motif CU052_16600 PF01502 Phosphoribosyl-AMP cyclohydrolase CU052_16600 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CU052_16605 PF00977 Histidine biosynthesis protein CU052_16610 PF00977 Histidine biosynthesis protein CU052_16615 PF00117 Glutamine amidotransferase class-I CU052_16620 PF08645 Polynucleotide kinase 3 phosphatase CU052_16620 PF00475 Imidazoleglycerol-phosphate dehydratase CU052_16625 PF00155 Aminotransferase class I and II CU052_16630 PF00815 Histidinol dehydrogenase CU052_16635 PF08029 HisG, C-terminal domain CU052_16635 PF01634 ATP phosphoribosyltransferase CU052_16640 PF03553 Na+/H+ antiporter family CU052_16645 PF00816 H-NS histone family CU052_16650 PF00294 pfkB family carbohydrate kinase CU052_16665 PF04356 Protein of unknown function (DUF489) CU052_16670 PF00206 Lyase CU052_16670 PF08328 Adenylosuccinate lyase C-terminal CU052_16680 PF16036 Chalcone isomerase-like CU052_16705 PF00106 short chain dehydrogenase CU052_16715 PF01435 Peptidase family M48 CU052_16730 PF08241 Methyltransferase domain CU052_16735 PF00155 Aminotransferase class I and II CU052_16740 PF06968 Biotin and Thiamin Synthesis associated domain CU052_16740 PF04055 Radical SAM superfamily CU052_16745 PF00202 Aminotransferase class-III CU052_16750 PF01258 Prokaryotic dksA/traR C4-type zinc finger CU052_16765 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CU052_16765 PF02403 Seryl-tRNA synthetase N-terminal domain CU052_16770 PF00004 ATPase family associated with various cellular activities (AAA) CU052_16770 PF16193 AAA C-terminal domain CU052_16770 PF12002 MgsA AAA+ ATPase C terminal CU052_16775 PF03548 Outer membrane lipoprotein carrier protein LolA CU052_16780 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CU052_16780 PF01580 FtsK/SpoIIIE family CU052_16780 PF09397 Ftsk gamma domain CU052_16780 PF17854 FtsK alpha domain CU052_16785 PF01037 Lrp/AsnC ligand binding domain CU052_16790 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CU052_16790 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CU052_16800 PF03466 LysR substrate binding domain CU052_16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_16835 PF18273 Type III R-M EcoP15I C-terminal domain CU052_16835 PF01555 DNA methylase CU052_16840 PF08774 VRR-NUC domain CU052_16840 PF04851 Type III restriction enzyme, res subunit CU052_16950 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CU052_16980 PF01752 Collagenase CU052_16980 PF04151 Bacterial pre-peptidase C-terminal domain CU052_16980 PF08453 Peptidase family M9 N-terminal CU052_16990 PF01527 Transposase CU052_17005 PF00665 Integrase core domain CU052_17005 PF02796 Helix-turn-helix domain of resolvase CU052_17020 PF05844 YopD protein CU052_17030 PF07720 Tetratricopeptide repeat CU052_17035 PF04792 V antigen (LcrV) protein CU052_17045 PF09621 Type III secretion system regulator (LcrR) CU052_17050 PF00771 FHIPEP family CU052_17070 PF09059 TyeA CU052_17075 PF07201 HrpJ-like domain CU052_17080 PF02874 ATP synthase alpha/beta family, beta-barrel domain CU052_17080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CU052_17080 PF18269 T3SS EscN ATPase C-terminal domain CU052_17095 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CU052_17100 PF00813 FliP family CU052_17105 PF01313 Bacterial export proteins, family 3 CU052_17110 PF01311 Bacterial export proteins, family 1 CU052_17115 PF01312 FlhB HrpN YscU SpaS Family CU052_17150 PF02108 Flagellar assembly protein FliH CU052_17160 PF01514 Secretory protein of YscJ/FliF family CU052_17165 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI CU052_17180 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CU052_17210 PF12833 Helix-turn-helix domain CU052_17230 PF01695 IstB-like ATP binding protein CU052_17235 PF02796 Helix-turn-helix domain of resolvase CU052_17235 PF00665 Integrase core domain CU052_17245 PF02384 N-6 DNA Methylase CU052_17245 PF12161 HsdM N-terminal domain CU052_17265 PF11867 Domain of unknown function (DUF3387) CU052_17265 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CU052_17265 PF18766 SWI2/SNF2 ATPase CU052_17275 PF02384 N-6 DNA Methylase CU052_17275 PF12161 HsdM N-terminal domain CU052_17285 PF02384 N-6 DNA Methylase CU052_17335 PF04002 RadC-like JAB domain CU052_17380 PF13356 Arm DNA-binding domain CU052_17380 PF00589 Phage integrase family CU052_17390 PF06610 L-alanine exporter CU052_17395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_17395 PF00072 Response regulator receiver domain CU052_17395 PF09308 LuxQ, periplasmic CU052_17395 PF00512 His Kinase A (phospho-acceptor) domain CU052_17405 PF03738 Glutathionylspermidine synthase preATP-grasp CU052_17415 PF03994 Domain of Unknown Function (DUF350) CU052_17425 PF02445 Quinolinate synthetase A protein CU052_17430 PF01238 Phosphomannose isomerase type I CU052_17435 PF13419 Haloacid dehalogenase-like hydrolase CU052_17440 PF00465 Iron-containing alcohol dehydrogenase CU052_17445 PF12833 Helix-turn-helix domain CU052_17450 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CU052_17455 PF00923 Transaldolase/Fructose-6-phosphate aldolase CU052_17460 PF01370 NAD dependent epimerase/dehydratase family CU052_17465 PF04055 Radical SAM superfamily CU052_17475 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CU052_17485 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CU052_17485 PF00381 PTS HPr component phosphorylation site CU052_17485 PF02896 PEP-utilising enzyme, TIM barrel domain CU052_17485 PF00391 PEP-utilising enzyme, mobile domain CU052_17485 PF05524 PEP-utilising enzyme, N-terminal CU052_17490 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CU052_17490 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CU052_17495 PF03928 Haem-degrading CU052_17500 PF01380 SIS domain CU052_17500 PF00571 CBS domain CU052_17505 PF13174 Tetratricopeptide repeat CU052_17505 PF16331 TolA binding protein trimerisation CU052_17510 PF00691 OmpA family CU052_17515 PF07676 WD40-like Beta Propeller Repeat CU052_17515 PF04052 TolB amino-terminal domain CU052_17525 PF02472 Biopolymer transport protein ExbD/TolR CU052_17530 PF01618 MotA/TolQ/ExbB proton channel family CU052_17535 PF03061 Thioesterase superfamily CU052_17545 PF08173 Membrane bound YbgT-like protein CU052_17550 PF02322 Cytochrome bd terminal oxidase subunit II CU052_17555 PF01654 Cytochrome bd terminal oxidase subunit I CU052_17560 PF05496 Holliday junction DNA helicase RuvB P-loop domain CU052_17560 PF05491 RuvB C-terminal winged helix domain CU052_17560 PF17864 RuvB AAA lid domain CU052_17565 PF07499 RuvA, C-terminal domain CU052_17565 PF01330 RuvA N terminal domain CU052_17570 PF02203 Tar ligand binding domain homologue CU052_17570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_17570 PF00672 HAMP domain CU052_17575 PF02075 Crossover junction endodeoxyribonuclease RuvC CU052_17580 PF00152 tRNA synthetases class II (D, K and N) CU052_17580 PF02938 GAD domain CU052_17580 PF01336 OB-fold nucleic acid binding domain CU052_17585 PF01904 Protein of unknown function DUF72 CU052_17590 PF13649 Methyltransferase domain CU052_17595 PF08003 Protein of unknown function (DUF1698) CU052_17605 PF08443 RimK-like ATP-grasp domain CU052_17605 PF18030 RimK PreATP-grasp domain CU052_17615 PF08443 RimK-like ATP-grasp domain CU052_17615 PF18030 RimK PreATP-grasp domain CU052_17625 PF16330 MukB hinge domain CU052_17625 PF04310 MukB N-terminal CU052_17630 PF04288 MukE-like family CU052_17635 PF17192 MukF middle domain CU052_17635 PF17193 MukF C-terminal domain CU052_17635 PF03882 MukF winged-helix domain CU052_17645 PF02698 DUF218 domain CU052_17650 PF00486 Transcriptional regulatory protein, C terminal CU052_17650 PF00072 Response regulator receiver domain CU052_17655 PF02613 Nitrate reductase delta subunit CU052_17660 PF00356 Bacterial regulatory proteins, lacI family CU052_17665 PF04993 TfoX N-terminal domain CU052_17665 PF04994 TfoX C-terminal domain CU052_17685 PF08323 Starch synthase catalytic domain CU052_17685 PF00534 Glycosyl transferases group 1 CU052_17690 PF00483 Nucleotidyl transferase CU052_17695 PF01396 Topoisomerase DNA binding C4 zinc finger CU052_17695 PF08272 Topoisomerase I zinc-ribbon-like CU052_17695 PF01751 Toprim domain CU052_17695 PF01131 DNA topoisomerase CU052_17700 PF10692 Protein of unknown function (DUF2498) CU052_17705 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CU052_17715 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CU052_17720 PF04377 Arginine-tRNA-protein transferase, C terminus CU052_17720 PF04376 Arginine-tRNA-protein transferase, N terminus CU052_17725 PF01176 Translation initiation factor 1A / IF-1 CU052_17730 PF10431 C-terminal, D2-small domain, of ClpB protein CU052_17730 PF02861 Clp amino terminal domain, pathogenicity island component CU052_17730 PF07724 AAA domain (Cdc48 subfamily) CU052_17730 PF17871 AAA lid domain CU052_17730 PF00004 ATPase family associated with various cellular activities (AAA) CU052_17735 PF02617 ATP-dependent Clp protease adaptor protein ClpS CU052_17740 PF00313 'Cold-shock' DNA-binding domain CU052_17745 PF03971 Monomeric isocitrate dehydrogenase CU052_17750 PF00849 RNA pseudouridylate synthase CU052_17755 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CU052_17765 PF13307 Helicase C-terminal domain CU052_17765 PF06733 DEAD_2 CU052_17770 PF01925 Sulfite exporter TauE/SafE CU052_17780 PF10689 Protein of unknown function (DUF2496) CU052_17785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_17785 PF00672 HAMP domain CU052_17790 PF03372 Endonuclease/Exonuclease/phosphatase family CU052_17795 PF00528 Binding-protein-dependent transport system inner membrane component CU052_17800 PF00528 Binding-protein-dependent transport system inner membrane component CU052_17805 PF00497 Bacterial extracellular solute-binding proteins, family 3 CU052_17810 PF00005 ABC transporter CU052_17830 PF02901 Pyruvate formate lyase-like CU052_17830 PF01228 Glycine radical CU052_17840 PF04055 Radical SAM superfamily CU052_17850 PF03887 YfbU domain CU052_17860 PF08298 PrkA AAA domain CU052_17860 PF06798 PrkA serine protein kinase C-terminal domain CU052_17865 PF04285 Protein of unknown function (DUF444) CU052_17875 PF17678 Glycosyl hydrolase family 92 N-terminal domain CU052_17875 PF07971 Glycosyl hydrolase family 92 CU052_17885 PF17678 Glycosyl hydrolase family 92 N-terminal domain CU052_17885 PF07971 Glycosyl hydrolase family 92 CU052_17890 PF07971 Glycosyl hydrolase family 92 CU052_17890 PF17678 Glycosyl hydrolase family 92 N-terminal domain CU052_17905 PF08220 DeoR-like helix-turn-helix domain CU052_17905 PF00455 DeoR C terminal sensor domain CU052_17920 PF00465 Iron-containing alcohol dehydrogenase CU052_17925 PF13419 Haloacid dehalogenase-like hydrolase CU052_17930 PF00923 Transaldolase/Fructose-6-phosphate aldolase CU052_17935 PF02779 Transketolase, pyrimidine binding domain CU052_17935 PF00456 Transketolase, thiamine diphosphate binding domain CU052_17935 PF02780 Transketolase, C-terminal domain CU052_17940 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CU052_17945 PF01546 Peptidase family M20/M25/M40 CU052_17950 PF00367 phosphotransferase system, EIIB CU052_17950 PF02378 Phosphotransferase system, EIIC CU052_17960 PF01641 SelR domain CU052_17960 PF01625 Peptide methionine sulfoxide reductase CU052_17965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CU052_17970 PF00455 DeoR C terminal sensor domain CU052_17970 PF08220 DeoR-like helix-turn-helix domain CU052_17975 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CU052_17975 PF00356 Bacterial regulatory proteins, lacI family CU052_17980 PF00367 phosphotransferase system, EIIB CU052_17980 PF02378 Phosphotransferase system, EIIC CU052_17985 PF00155 Aminotransferase class I and II CU052_17990 PF01238 Phosphomannose isomerase type I CU052_18010 PF00199 Catalase CU052_18010 PF06628 Catalase-related immune-responsive CU052_18020 PF00080 Copper/zinc superoxide dismutase (SODC) CU052_18025 PF00857 Isochorismatase family CU052_18035 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CU052_18035 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CU052_18050 PF06942 GlpM protein CU052_18090 PF00582 Universal stress protein family CU052_18095 PF01048 Phosphorylase superfamily CU052_18110 PF00005 ABC transporter CU052_18110 PF00571 CBS domain CU052_18115 PF00528 Binding-protein-dependent transport system inner membrane component CU052_18125 PF02001 Protein of unknown function DUF134 CU052_18145 PF03144 Elongation factor Tu domain 2 CU052_18145 PF00009 Elongation factor Tu GTP binding domain CU052_18145 PF03764 Elongation factor G, domain IV CU052_18145 PF00679 Elongation factor G C-terminus CU052_18145 PF14492 Elongation Factor G, domain II CU052_18155 PF13378 Enolase C-terminal domain-like CU052_18155 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CU052_18165 PF03466 LysR substrate binding domain CU052_18165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_18170 PF00924 Mechanosensitive ion channel CU052_18180 PF01070 FMN-dependent dehydrogenase CU052_18185 PF02652 L-lactate permease CU052_18190 PF03466 LysR substrate binding domain CU052_18190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_18210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_18210 PF00005 ABC transporter CU052_18220 PF13654 AAA domain CU052_18220 PF05362 Lon protease (S16) C-terminal proteolytic domain CU052_18225 PF12729 Four helix bundle sensory module for signal transduction CU052_18225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_18225 PF00672 HAMP domain CU052_18230 PF12729 Four helix bundle sensory module for signal transduction CU052_18230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_18230 PF00672 HAMP domain CU052_18235 PF12945 Flagellar protein YcgR CU052_18235 PF07238 PilZ domain CU052_18250 PF13302 Acetyltransferase (GNAT) domain CU052_18255 PF12800 4Fe-4S binding domain CU052_18255 PF12838 4Fe-4S dicluster domain CU052_18260 PF12837 4Fe-4S binding domain CU052_18260 PF12801 4Fe-4S binding domain CU052_18265 PF01022 Bacterial regulatory protein, arsR family CU052_18280 PF00005 ABC transporter CU052_18280 PF12558 ATP-binding cassette cobalt transporter CU052_18285 PF07155 ECF-type riboflavin transporter, S component CU052_18290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_18290 PF00529 HlyD membrane-fusion protein of T1SS CU052_18295 PF11742 Protein of unknown function (DUF3302) CU052_18305 PF00990 Diguanylate cyclase, GGDEF domain CU052_18320 PF01048 Phosphorylase superfamily CU052_18330 PF08349 Protein of unknown function (DUF1722) CU052_18335 PF13411 MerR HTH family regulatory protein CU052_18340 PF03441 FAD binding domain of DNA photolyase CU052_18340 PF00875 DNA photolyase CU052_18345 PF03734 L,D-transpeptidase catalytic domain CU052_18345 PF01476 LysM domain CU052_18345 PF17969 L,D-transpeptidase C-terminal domain CU052_18355 PF00271 Helicase conserved C-terminal domain CU052_18355 PF00270 DEAD/DEAH box helicase CU052_18365 PF00672 HAMP domain CU052_18365 PF02743 Cache domain CU052_18365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_18370 PF12849 PBP superfamily domain CU052_18375 PF00528 Binding-protein-dependent transport system inner membrane component CU052_18380 PF00528 Binding-protein-dependent transport system inner membrane component CU052_18385 PF00005 ABC transporter CU052_18400 PF13519 von Willebrand factor type A domain CU052_18405 PF13519 von Willebrand factor type A domain CU052_18415 PF01882 Protein of unknown function DUF58 CU052_18420 PF17863 AAA lid domain CU052_18420 PF07726 ATPase family associated with various cellular activities (AAA) CU052_18425 PF00672 HAMP domain CU052_18425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_18425 PF02743 Cache domain CU052_18435 PF00196 Bacterial regulatory proteins, luxR family CU052_18440 PF00196 Bacterial regulatory proteins, luxR family CU052_18450 PF00664 ABC transporter transmembrane region CU052_18450 PF00005 ABC transporter CU052_18455 PF00529 HlyD membrane-fusion protein of T1SS CU052_18460 PF12464 Maltose acetyltransferase CU052_18460 PF14602 Hexapeptide repeat of succinyl-transferase CU052_18465 PF00072 Response regulator receiver domain CU052_18465 PF01966 HD domain CU052_18470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_18470 PF00512 His Kinase A (phospho-acceptor) domain CU052_18470 PF02743 Cache domain CU052_18490 PF00528 Binding-protein-dependent transport system inner membrane component CU052_18495 PF00528 Binding-protein-dependent transport system inner membrane component CU052_18500 PF00005 ABC transporter CU052_18520 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CU052_18540 PF00691 OmpA family CU052_18550 PF00990 Diguanylate cyclase, GGDEF domain CU052_18550 PF00563 EAL domain CU052_18550 PF03707 Bacterial signalling protein N terminal repeat CU052_18555 PF02378 Phosphotransferase system, EIIC CU052_18560 PF00127 Copper binding proteins, plastocyanin/azurin family CU052_18570 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_18595 PF00873 AcrB/AcrD/AcrF family CU052_18615 PF00384 Molybdopterin oxidoreductase CU052_18615 PF01568 Molydopterin dinucleotide binding domain CU052_18615 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CU052_18615 PF12838 4Fe-4S dicluster domain CU052_18615 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CU052_18630 PF01418 Helix-turn-helix domain, rpiR family CU052_18630 PF01380 SIS domain CU052_18630 PF02685 Glucokinase CU052_18640 PF07969 Amidohydrolase family CU052_18650 PF00474 Sodium:solute symporter family CU052_18655 PF00294 pfkB family carbohydrate kinase CU052_18660 PF01081 KDPG and KHG aldolase CU052_18665 PF00728 Glycosyl hydrolase family 20, catalytic domain CU052_18665 PF02838 Glycosyl hydrolase family 20, domain 2 CU052_18675 PF01042 Endoribonuclease L-PSP CU052_18685 PF00005 ABC transporter CU052_18695 PF00672 HAMP domain CU052_18695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_18695 PF17200 Single Cache domain 2 CU052_18700 PF00005 ABC transporter CU052_18705 PF01032 FecCD transport family CU052_18715 PF02472 Biopolymer transport protein ExbD/TolR CU052_18720 PF01618 MotA/TolQ/ExbB proton channel family CU052_18725 PF03544 Gram-negative bacterial TonB protein C-terminal CU052_18730 PF04055 Radical SAM superfamily CU052_18735 PF06228 Haem utilisation ChuX/HutX CU052_18740 PF01243 Pyridoxamine 5'-phosphate oxidase CU052_18750 PF01584 CheW-like domain CU052_18750 PF00072 Response regulator receiver domain CU052_18770 PF00128 Alpha amylase, catalytic domain CU052_18775 PF08659 KR domain CU052_18775 PF00550 Phosphopantetheine attachment site CU052_18775 PF14765 Polyketide synthase dehydratase CU052_18775 PF02801 Beta-ketoacyl synthase, C-terminal domain CU052_18775 PF00107 Zinc-binding dehydrogenase CU052_18775 PF08240 Alcohol dehydrogenase GroES-like domain CU052_18775 PF16197 Ketoacyl-synthetase C-terminal extension CU052_18775 PF00698 Acyl transferase domain CU052_18775 PF00109 Beta-ketoacyl synthase, N-terminal domain CU052_18795 PF03466 LysR substrate binding domain CU052_18795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_18825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_18825 PF03466 LysR substrate binding domain CU052_18835 PF02254 TrkA-N domain CU052_18835 PF00999 Sodium/hydrogen exchanger family CU052_18840 PF02525 Flavodoxin-like fold CU052_18845 PF02567 Phenazine biosynthesis-like protein CU052_18855 PF01161 Phosphatidylethanolamine-binding protein CU052_18870 PF01758 Sodium Bile acid symporter family CU052_18885 PF01638 HxlR-like helix-turn-helix CU052_18895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CU052_18900 PF01238 Phosphomannose isomerase type I CU052_18905 PF07748 Glycosyl hydrolases family 38 C-terminal domain CU052_18905 PF01074 Glycosyl hydrolases family 38 N-terminal domain CU052_18905 PF09261 Alpha mannosidase middle domain CU052_18910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CU052_18910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CU052_18910 PF02378 Phosphotransferase system, EIIC CU052_18915 PF07702 UTRA domain CU052_18915 PF00392 Bacterial regulatory proteins, gntR family CU052_18920 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CU052_18925 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CU052_18925 PF02378 Phosphotransferase system, EIIC CU052_18930 PF08240 Alcohol dehydrogenase GroES-like domain CU052_18930 PF00107 Zinc-binding dehydrogenase CU052_18965 PF03222 Tryptophan/tyrosine permease family CU052_18975 PF00672 HAMP domain CU052_18975 PF02743 Cache domain CU052_18975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_19005 PF01551 Peptidase family M23 CU052_19005 PF08525 Opacity-associated protein A N-terminal motif CU052_19005 PF01476 LysM domain CU052_19010 PF08448 PAS fold CU052_19010 PF08447 PAS fold CU052_19010 PF00563 EAL domain CU052_19010 PF00990 Diguanylate cyclase, GGDEF domain CU052_19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_19015 PF03466 LysR substrate binding domain CU052_19020 PF07690 Major Facilitator Superfamily CU052_19035 PF00462 Glutaredoxin CU052_19040 PF00892 EamA-like transporter family CU052_19055 PF01557 Fumarylacetoacetate (FAA) hydrolase family CU052_19075 PF01810 LysE type translocator CU052_19085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CU052_19085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CU052_19085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CU052_19085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CU052_19090 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CU052_19090 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CU052_19095 PF00115 Cytochrome C and Quinol oxidase polypeptide I CU052_19100 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CU052_19105 PF00510 Cytochrome c oxidase subunit III CU052_19125 PF02628 Cytochrome oxidase assembly protein CU052_19130 PF01040 UbiA prenyltransferase family CU052_19135 PF01389 OmpA-like transmembrane domain CU052_19135 PF00691 OmpA family CU052_19140 PF00793 DAHP synthetase I family CU052_19145 PF07690 Major Facilitator Superfamily CU052_19150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_19150 PF00672 HAMP domain CU052_19150 PF12729 Four helix bundle sensory module for signal transduction CU052_19155 PF02780 Transketolase, C-terminal domain CU052_19155 PF00456 Transketolase, thiamine diphosphate binding domain CU052_19155 PF02779 Transketolase, pyrimidine binding domain CU052_19160 PF00923 Transaldolase/Fructose-6-phosphate aldolase CU052_19175 PF08329 Chitinase A, N-terminal domain CU052_19175 PF00704 Glycosyl hydrolases family 18 CU052_19180 PF03707 Bacterial signalling protein N terminal repeat CU052_19180 PF00563 EAL domain CU052_19180 PF00990 Diguanylate cyclase, GGDEF domain CU052_19185 PF00581 Rhodanese-like domain CU052_19205 PF00899 ThiF family CU052_19210 PF03453 MoeA N-terminal region (domain I and II) CU052_19210 PF03454 MoeA C-terminal region (domain IV) CU052_19210 PF00994 Probable molybdopterin binding domain CU052_19220 PF01227 GTP cyclohydrolase I CU052_19230 PF01566 Natural resistance-associated macrophage protein CU052_19240 PF00654 Voltage gated chloride channel CU052_19255 PF00248 Aldo/keto reductase family CU052_19260 PF00072 Response regulator receiver domain CU052_19270 PF03853 YjeF-related protein N-terminus CU052_19270 PF01256 Carbohydrate kinase CU052_19275 PF00478 IMP dehydrogenase / GMP reductase domain CU052_19285 PF12146 Serine aminopeptidase, S33 CU052_19290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_19290 PF03466 LysR substrate binding domain CU052_19310 PF00263 Bacterial type II and III secretion system protein CU052_19310 PF13629 Pilus formation protein N terminal region CU052_19310 PF04972 BON domain CU052_19320 PF10609 NUBPL iron-transfer P-loop NTPase CU052_19325 PF00437 Type II/IV secretion system protein CU052_19360 PF00691 OmpA family CU052_19360 PF13488 Glycine zipper CU052_19420 PF00990 Diguanylate cyclase, GGDEF domain CU052_19420 PF07694 5TMR of 5TMR-LYT CU052_19430 PF00440 Bacterial regulatory proteins, tetR family CU052_19430 PF13977 BetI-type transcriptional repressor, C-terminal CU052_19435 PF00171 Aldehyde dehydrogenase family CU052_19440 PF05199 GMC oxidoreductase CU052_19440 PF00732 GMC oxidoreductase CU052_19450 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CU052_19455 PF00528 Binding-protein-dependent transport system inner membrane component CU052_19460 PF00571 CBS domain CU052_19460 PF00005 ABC transporter CU052_19465 PF00881 Nitroreductase family CU052_19475 PF01145 SPFH domain / Band 7 family CU052_19475 PF16200 C-terminal region of band_7 CU052_19490 PF00990 Diguanylate cyclase, GGDEF domain CU052_19490 PF00563 EAL domain CU052_19490 PF03707 Bacterial signalling protein N terminal repeat CU052_19500 PF00034 Cytochrome c CU052_19500 PF03150 Di-haem cytochrome c peroxidase CU052_19505 PF00512 His Kinase A (phospho-acceptor) domain CU052_19505 PF00072 Response regulator receiver domain CU052_19505 PF09308 LuxQ, periplasmic CU052_19505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_19520 PF04116 Fatty acid hydroxylase superfamily CU052_19545 PF09335 SNARE associated Golgi protein CU052_19575 PF01177 Asp/Glu/Hydantoin racemase CU052_19580 PF01048 Phosphorylase superfamily CU052_19590 PF05025 RbsD / FucU transport protein family CU052_19595 PF00005 ABC transporter CU052_19600 PF02653 Branched-chain amino acid transport system / permease component CU052_19605 PF13407 Periplasmic binding protein domain CU052_19610 PF00294 pfkB family carbohydrate kinase CU052_19615 PF00356 Bacterial regulatory proteins, lacI family CU052_19625 PF04973 Nicotinamide mononucleotide transporter CU052_19630 PF01048 Phosphorylase superfamily CU052_19645 PF01497 Periplasmic binding protein CU052_19650 PF01032 FecCD transport family CU052_19655 PF01032 FecCD transport family CU052_19660 PF00005 ABC transporter CU052_19665 PF13411 MerR HTH family regulatory protein CU052_19685 PF00593 TonB dependent receptor CU052_19685 PF07715 TonB-dependent Receptor Plug Domain CU052_19700 PF01470 Pyroglutamyl peptidase CU052_19710 PF02492 CobW/HypB/UreG, nucleotide-binding domain CU052_19710 PF07683 Cobalamin synthesis protein cobW C-terminal domain CU052_19715 PF00990 Diguanylate cyclase, GGDEF domain CU052_19715 PF00563 EAL domain CU052_19715 PF05231 MASE1 CU052_19715 PF08447 PAS fold CU052_19715 PF08448 PAS fold CU052_19715 PF13426 PAS domain CU052_19720 PF00271 Helicase conserved C-terminal domain CU052_19720 PF00270 DEAD/DEAH box helicase CU052_19740 PF12792 CSS motif domain associated with EAL CU052_19740 PF00563 EAL domain CU052_19745 PF00005 ABC transporter CU052_19750 PF00892 EamA-like transporter family CU052_19760 PF08534 Redoxin CU052_19780 PF00005 ABC transporter CU052_19780 PF17755 UvrA DNA-binding domain CU052_19780 PF17760 UvrA interaction domain CU052_19785 PF00899 ThiF family CU052_19805 PF02796 Helix-turn-helix domain of resolvase CU052_19805 PF00239 Resolvase, N terminal domain CU052_19890 PF01575 MaoC like domain CU052_19895 PF12849 PBP superfamily domain CU052_19905 PF12833 Helix-turn-helix domain CU052_19910 PF08206 Ribonuclease B OB domain CU052_19910 PF00773 RNB domain CU052_19910 PF00575 S1 RNA binding domain CU052_19915 PF03880 DbpA RNA binding domain CU052_19915 PF00270 DEAD/DEAH box helicase CU052_19915 PF00271 Helicase conserved C-terminal domain CU052_19920 PF00990 Diguanylate cyclase, GGDEF domain CU052_19920 PF03707 Bacterial signalling protein N terminal repeat CU052_19920 PF00563 EAL domain CU052_19925 PF00871 Acetokinase family CU052_19930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_19930 PF03466 LysR substrate binding domain CU052_19940 PF00171 Aldehyde dehydrogenase family CU052_19950 PF02028 BCCT, betaine/carnitine/choline family transporter CU052_19980 PF00672 HAMP domain CU052_19980 PF02743 Cache domain CU052_19980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_19985 PF00005 ABC transporter CU052_19990 PF00497 Bacterial extracellular solute-binding proteins, family 3 CU052_19995 PF00528 Binding-protein-dependent transport system inner membrane component CU052_20000 PF00528 Binding-protein-dependent transport system inner membrane component CU052_20010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_20010 PF03466 LysR substrate binding domain CU052_20015 PF13417 Glutathione S-transferase, N-terminal domain CU052_20015 PF00043 Glutathione S-transferase, C-terminal domain CU052_20025 PF04205 FMN-binding domain CU052_20025 PF03358 NADPH-dependent FMN reductase CU052_20025 PF00890 FAD binding domain CU052_20030 PF02424 ApbE family CU052_20040 PF01012 Electron transfer flavoprotein domain CU052_20045 PF01012 Electron transfer flavoprotein domain CU052_20045 PF00766 Electron transfer flavoprotein FAD-binding domain CU052_20050 PF02817 e3 binding domain CU052_20050 PF00364 Biotin-requiring enzyme CU052_20050 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CU052_20055 PF02780 Transketolase, C-terminal domain CU052_20055 PF02779 Transketolase, pyrimidine binding domain CU052_20060 PF00676 Dehydrogenase E1 component CU052_20075 PF00012 Hsp70 protein CU052_20080 PF04314 Copper chaperone PCu(A)C CU052_20110 PF00072 Response regulator receiver domain CU052_20110 PF00486 Transcriptional regulatory protein, C terminal CU052_20125 PF00245 Alkaline phosphatase CU052_20135 PF01483 Proprotein convertase P-domain CU052_20135 PF00082 Subtilase family CU052_20145 PF00990 Diguanylate cyclase, GGDEF domain CU052_20145 PF08448 PAS fold CU052_20155 PF03222 Tryptophan/tyrosine permease family CU052_20160 PF08448 PAS fold CU052_20160 PF00990 Diguanylate cyclase, GGDEF domain CU052_20160 PF00563 EAL domain CU052_20170 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CU052_20170 PF01568 Molydopterin dinucleotide binding domain CU052_20170 PF00384 Molybdopterin oxidoreductase CU052_20175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CU052_20175 PF10414 Sirohaem synthase dimerisation region CU052_20175 PF14824 Sirohaem biosynthesis protein central CU052_20180 PF02885 Glycosyl transferase family, helical bundle domain CU052_20180 PF00591 Glycosyl transferase family, a/b domain CU052_20185 PF01738 Dienelactone hydrolase family CU052_20190 PF08376 Nitrate and nitrite sensing CU052_20190 PF03861 ANTAR domain CU052_20200 PF00005 ABC transporter CU052_20205 PF00528 Binding-protein-dependent transport system inner membrane component CU052_20210 PF00005 ABC transporter CU052_20215 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CU052_20215 PF13806 Rieske-like [2Fe-2S] domain CU052_20215 PF04324 BFD-like [2Fe-2S] binding domain CU052_20215 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_20215 PF18267 Rubredoxin NAD+ reductase C-terminal domain CU052_20215 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CU052_20245 PF00211 Adenylate and Guanylate cyclase catalytic domain CU052_20245 PF00072 Response regulator receiver domain CU052_20260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_20260 PF03466 LysR substrate binding domain CU052_20265 PF08525 Opacity-associated protein A N-terminal motif CU052_20265 PF01551 Peptidase family M23 CU052_20265 PF01476 LysM domain CU052_20275 PF01292 Prokaryotic cytochrome b561 CU052_20300 PF00486 Transcriptional regulatory protein, C terminal CU052_20300 PF00072 Response regulator receiver domain CU052_20305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_20305 PF02743 Cache domain CU052_20305 PF00672 HAMP domain CU052_20315 PF12464 Maltose acetyltransferase CU052_20315 PF14602 Hexapeptide repeat of succinyl-transferase CU052_20320 PF01594 AI-2E family transporter CU052_20325 PF00378 Enoyl-CoA hydratase/isomerase CU052_20330 PF00072 Response regulator receiver domain CU052_20330 PF00990 Diguanylate cyclase, GGDEF domain CU052_20405 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CU052_20410 PF00753 Metallo-beta-lactamase superfamily CU052_20420 PF01645 Conserved region in glutamate synthase CU052_20420 PF13187 4Fe-4S dicluster domain CU052_20440 PF01757 Acyltransferase family CU052_20450 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CU052_20455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CU052_20480 PF03793 PASTA domain CU052_20480 PF00069 Protein kinase domain CU052_20500 PF13677 Membrane MotB of proton-channel complex MotA/MotB CU052_20500 PF00691 OmpA family CU052_20560 PF00004 ATPase family associated with various cellular activities (AAA) CU052_20560 PF10431 C-terminal, D2-small domain, of ClpB protein CU052_20560 PF17871 AAA lid domain CU052_20560 PF07724 AAA domain (Cdc48 subfamily) CU052_20570 PF04717 Type VI secretion system, phage-baseplate injector CU052_20585 PF03527 RHS protein CU052_20610 PF00149 Calcineurin-like phosphoesterase CU052_20610 PF12320 Type 5 capsule protein repressor C-terminal domain CU052_20615 PF13476 AAA domain CU052_20660 PF08212 Lipocalin-like domain CU052_20670 PF07690 Major Facilitator Superfamily CU052_20680 PF03606 C4-dicarboxylate anaerobic carrier CU052_20685 PF00034 Cytochrome c CU052_20690 PF01212 Beta-eliminating lyase CU052_20700 PF12592 Protein of unknown function (DUF3763) CU052_20700 PF17868 AAA lid domain CU052_20700 PF07728 AAA domain (dynein-related subfamily) CU052_20705 PF05762 VWA domain containing CoxE-like protein CU052_20715 PF03466 LysR substrate binding domain CU052_20715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_20720 PF01565 FAD binding domain CU052_20720 PF09330 D-lactate dehydrogenase, membrane binding CU052_20740 PF09154 Domain of unknown function (DUF1939) CU052_20740 PF00128 Alpha amylase, catalytic domain CU052_20795 PF00563 EAL domain CU052_20795 PF00990 Diguanylate cyclase, GGDEF domain CU052_20795 PF13426 PAS domain CU052_20800 PF04324 BFD-like [2Fe-2S] binding domain CU052_20800 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CU052_20800 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_20800 PF18267 Rubredoxin NAD+ reductase C-terminal domain CU052_20800 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CU052_20805 PF13806 Rieske-like [2Fe-2S] domain CU052_20810 PF01226 Formate/nitrite transporter CU052_20815 PF10414 Sirohaem synthase dimerisation region CU052_20815 PF14824 Sirohaem biosynthesis protein central CU052_20815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CU052_20830 PF03605 Anaerobic c4-dicarboxylate membrane transporter CU052_20840 PF00593 TonB dependent receptor CU052_20840 PF07715 TonB-dependent Receptor Plug Domain CU052_20855 PF11756 Nitrous oxide-stimulated promoter CU052_20870 PF07690 Major Facilitator Superfamily CU052_20875 PF00085 Thioredoxin CU052_20880 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CU052_20880 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CU052_20905 PF00529 HlyD membrane-fusion protein of T1SS CU052_20905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_20915 PF01594 AI-2E family transporter CU052_20925 PF01238 Phosphomannose isomerase type I CU052_20930 PF07690 Major Facilitator Superfamily CU052_20935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_20935 PF05231 MASE1 CU052_20935 PF07730 Histidine kinase CU052_20940 PF00196 Bacterial regulatory proteins, luxR family CU052_20940 PF00072 Response regulator receiver domain CU052_20945 PF07690 Major Facilitator Superfamily CU052_20975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CU052_20975 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_20985 PF04143 Sulphur transport CU052_21000 PF13597 Anaerobic ribonucleoside-triphosphate reductase CU052_21000 PF03477 ATP cone domain CU052_21010 PF01554 MatE CU052_21015 PF12833 Helix-turn-helix domain CU052_21020 PF00155 Aminotransferase class I and II CU052_21025 PF18030 RimK PreATP-grasp domain CU052_21025 PF08443 RimK-like ATP-grasp domain CU052_21035 PF04076 Bacterial OB fold (BOF) protein CU052_21040 PF07685 CobB/CobQ-like glutamine amidotransferase domain CU052_21040 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CU052_21050 PF00528 Binding-protein-dependent transport system inner membrane component CU052_21055 PF03459 TOBE domain CU052_21055 PF00005 ABC transporter CU052_21065 PF01590 GAF domain CU052_21065 PF00990 Diguanylate cyclase, GGDEF domain CU052_21065 PF00360 Phytochrome region CU052_21065 PF00563 EAL domain CU052_21080 PF00990 Diguanylate cyclase, GGDEF domain CU052_21080 PF17158 Membrane-associated sensor, integral membrane domain CU052_21095 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CU052_21095 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CU052_21095 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CU052_21100 PF02233 NAD(P) transhydrogenase beta subunit CU052_21110 PF00486 Transcriptional regulatory protein, C terminal CU052_21110 PF00072 Response regulator receiver domain CU052_21125 PF03701 Uncharacterised protein family (UPF0181) CU052_21155 PF01253 Translation initiation factor SUI1 CU052_21165 PF01820 D-ala D-ala ligase N-terminus CU052_21165 PF07478 D-ala D-ala ligase C-terminus CU052_21170 PF05036 Sporulation related domain CU052_21175 PF13607 Succinyl-CoA ligase like flavodoxin domain CU052_21175 PF13380 CoA binding domain CU052_21175 PF00583 Acetyltransferase (GNAT) family CU052_21180 PF00593 TonB dependent receptor CU052_21180 PF07715 TonB-dependent Receptor Plug Domain CU052_21180 PF04886 PT repeat CU052_21185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_21185 PF03466 LysR substrate binding domain CU052_21200 PF16363 GDP-mannose 4,6 dehydratase CU052_21205 PF13426 PAS domain CU052_21205 PF05231 MASE1 CU052_21205 PF08447 PAS fold CU052_21205 PF00990 Diguanylate cyclase, GGDEF domain CU052_21205 PF00563 EAL domain CU052_21205 PF08448 PAS fold CU052_21210 PF03746 LamB/YcsF family CU052_21215 PF02682 Carboxyltransferase domain, subdomain C and D CU052_21220 PF02626 Carboxyltransferase domain, subdomain A and B CU052_21235 PF00005 ABC transporter CU052_21240 PF13472 GDSL-like Lipase/Acylhydrolase family CU052_21245 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CU052_21245 PF07055 Enoyl reductase FAD binding domain CU052_21245 PF12241 Trans-2-enoyl-CoA reductase catalytic region CU052_21250 PF00990 Diguanylate cyclase, GGDEF domain CU052_21250 PF00563 EAL domain CU052_21250 PF03707 Bacterial signalling protein N terminal repeat CU052_21250 PF13188 PAS domain CU052_21260 PF00684 DnaJ central domain CU052_21260 PF00226 DnaJ domain CU052_21260 PF01556 DnaJ C terminal domain CU052_21285 PF12793 Sugar transport-related sRNA regulator N-term CU052_21285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CU052_21295 PF03061 Thioesterase superfamily CU052_21310 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CU052_21315 PF12262 Bacterial virulence factor lipase N-terminal CU052_21345 PF03741 Integral membrane protein TerC family CU052_21350 PF02872 5'-nucleotidase, C-terminal domain CU052_21350 PF00149 Calcineurin-like phosphoesterase CU052_21355 PF11398 Protein of unknown function (DUF2813) CU052_21360 PF06496 Protein of unknown function (DUF1097) CU052_21365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_21365 PF03466 LysR substrate binding domain CU052_21375 PF01226 Formate/nitrite transporter CU052_21380 PF04264 YceI-like domain CU052_21385 PF01292 Prokaryotic cytochrome b561 CU052_21400 PF12792 CSS motif domain associated with EAL CU052_21400 PF00563 EAL domain CU052_21405 PF00270 DEAD/DEAH box helicase CU052_21405 PF00271 Helicase conserved C-terminal domain CU052_21410 PF04336 Acyl carrier protein phosphodiesterase CU052_21420 PF00672 HAMP domain CU052_21420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_21435 PF13419 Haloacid dehalogenase-like hydrolase CU052_21440 PF11849 Domain of unknown function (DUF3369) CU052_21455 PF00294 pfkB family carbohydrate kinase CU052_21465 PF00483 Nucleotidyl transferase CU052_21470 PF00704 Glycosyl hydrolases family 18 CU052_21470 PF06483 Chitinase C CU052_21475 PF06719 AraC-type transcriptional regulator N-terminus CU052_21475 PF12833 Helix-turn-helix domain CU052_21480 PF00465 Iron-containing alcohol dehydrogenase CU052_21490 PF00005 ABC transporter CU052_21495 PF00528 Binding-protein-dependent transport system inner membrane component CU052_21500 PF00497 Bacterial extracellular solute-binding proteins, family 3 CU052_21505 PF00528 Binding-protein-dependent transport system inner membrane component CU052_21510 PF00563 EAL domain CU052_21510 PF01590 GAF domain CU052_21510 PF00990 Diguanylate cyclase, GGDEF domain CU052_21510 PF00989 PAS fold CU052_21525 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CU052_21525 PF00356 Bacterial regulatory proteins, lacI family CU052_21530 PF00381 PTS HPr component phosphorylation site CU052_21530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CU052_21535 PF00294 pfkB family carbohydrate kinase CU052_21540 PF02378 Phosphotransferase system, EIIC CU052_21540 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CU052_21565 PF00873 AcrB/AcrD/AcrF family CU052_21570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_21575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_21585 PF01571 Aminomethyltransferase folate-binding domain CU052_21585 PF08669 Glycine cleavage T-protein C-terminal barrel domain CU052_21595 PF00464 Serine hydroxymethyltransferase CU052_21600 PF01597 Glycine cleavage H-protein CU052_21605 PF02347 Glycine cleavage system P-protein CU052_21715 PF02811 PHP domain CU052_21715 PF00929 Exonuclease CU052_21715 PF07733 Bacterial DNA polymerase III alpha NTPase domain CU052_21715 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CU052_21715 PF11490 DNA polymerase III polC-type N-terminus II CU052_21715 PF14579 Helix-hairpin-helix motif CU052_21725 PF01638 HxlR-like helix-turn-helix CU052_21740 PF00664 ABC transporter transmembrane region CU052_21740 PF00005 ABC transporter CU052_21745 PF00171 Aldehyde dehydrogenase family CU052_21765 PF00892 EamA-like transporter family CU052_21770 PF00893 Small Multidrug Resistance protein CU052_21785 PF01569 PAP2 superfamily CU052_21790 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_21790 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CU052_21795 PF01040 UbiA prenyltransferase family CU052_21800 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CU052_21805 PF00510 Cytochrome c oxidase subunit III CU052_21810 PF00115 Cytochrome C and Quinol oxidase polypeptide I CU052_21815 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CU052_21815 PF06481 COX Aromatic Rich Motif CU052_21830 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CU052_21830 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CU052_21835 PF00378 Enoyl-CoA hydratase/isomerase CU052_21840 PF00378 Enoyl-CoA hydratase/isomerase CU052_21850 PF00171 Aldehyde dehydrogenase family CU052_21855 PF02803 Thiolase, C-terminal domain CU052_21855 PF00108 Thiolase, N-terminal domain CU052_21860 PF09278 MerR, DNA binding CU052_21860 PF00376 MerR family regulatory protein CU052_21865 PF02770 Acyl-CoA dehydrogenase, middle domain CU052_21865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CU052_21865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CU052_21870 PF01039 Carboxyl transferase domain CU052_21875 PF00378 Enoyl-CoA hydratase/isomerase CU052_21880 PF00682 HMGL-like CU052_21900 PF00132 Bacterial transferase hexapeptide (six repeats) CU052_21910 PF00034 Cytochrome c CU052_21915 PF00115 Cytochrome C and Quinol oxidase polypeptide I CU052_21925 PF00034 Cytochrome c CU052_21925 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CU052_21940 PF00892 EamA-like transporter family CU052_21950 PF07963 Prokaryotic N-terminal methylation motif CU052_21950 PF08334 Type II secretion system (T2SS), protein G CU052_21955 PF00072 Response regulator receiver domain CU052_21955 PF01584 CheW-like domain CU052_21965 PF00881 Nitroreductase family CU052_21970 PF00672 HAMP domain CU052_21970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_21975 PF00196 Bacterial regulatory proteins, luxR family CU052_21975 PF00072 Response regulator receiver domain CU052_21980 PF03466 LysR substrate binding domain CU052_21980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_21985 PF00990 Diguanylate cyclase, GGDEF domain CU052_21990 PF00196 Bacterial regulatory proteins, luxR family CU052_21990 PF00072 Response regulator receiver domain CU052_21995 PF13188 PAS domain CU052_21995 PF03707 Bacterial signalling protein N terminal repeat CU052_21995 PF00990 Diguanylate cyclase, GGDEF domain CU052_21995 PF00563 EAL domain CU052_22000 PF00072 Response regulator receiver domain CU052_22000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_22000 PF00512 His Kinase A (phospho-acceptor) domain CU052_22000 PF09456 RcsC Alpha-Beta-Loop (ABL) CU052_22005 PF00990 Diguanylate cyclase, GGDEF domain CU052_22005 PF03707 Bacterial signalling protein N terminal repeat CU052_22005 PF00563 EAL domain CU052_22015 PF00593 TonB dependent receptor CU052_22015 PF07715 TonB-dependent Receptor Plug Domain CU052_22020 PF00005 ABC transporter CU052_22025 PF01032 FecCD transport family CU052_22030 PF01032 FecCD transport family CU052_22035 PF01497 Periplasmic binding protein CU052_22040 PF07715 TonB-dependent Receptor Plug Domain CU052_22040 PF07660 Secretin and TonB N terminus short domain CU052_22040 PF00593 TonB dependent receptor CU052_22045 PF00593 TonB dependent receptor CU052_22045 PF07715 TonB-dependent Receptor Plug Domain CU052_22050 PF00206 Lyase CU052_22050 PF02655 ATP-grasp domain CU052_22065 PF04183 IucA / IucC family CU052_22065 PF06276 Ferric iron reductase FhuF-like transporter CU052_22070 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CU052_22070 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CU052_22075 PF01263 Aldose 1-epimerase CU052_22080 PF00480 ROK family CU052_22085 PF00083 Sugar (and other) transporter CU052_22090 PF13181 Tetratricopeptide repeat CU052_22090 PF17128 Domain of unknown function (DUF5107) CU052_22110 PF01551 Peptidase family M23 CU052_22110 PF01476 LysM domain CU052_22110 PF08525 Opacity-associated protein A N-terminal motif CU052_22115 PF01926 50S ribosome-binding GTPase CU052_22120 PF00155 Aminotransferase class I and II CU052_22125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_22125 PF00072 Response regulator receiver domain CU052_22145 PF03606 C4-dicarboxylate anaerobic carrier CU052_22150 PF04011 LemA family CU052_22155 PF01435 Peptidase family M48 CU052_22170 PF08774 VRR-NUC domain CU052_22170 PF18081 Fanconi anemia-associated nuclease SAP domain CU052_22180 PF13186 Iron-sulfur cluster-binding domain CU052_22180 PF04055 Radical SAM superfamily CU052_22185 PF03781 Sulfatase-modifying factor enzyme 1 CU052_22200 PF04076 Bacterial OB fold (BOF) protein CU052_22205 PF00781 Diacylglycerol kinase catalytic domain CU052_22210 PF03466 LysR substrate binding domain CU052_22210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_22215 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CU052_22215 PF01872 RibD C-terminal domain CU052_22220 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CU052_22220 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CU052_22225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CU052_22225 PF02874 ATP synthase alpha/beta family, beta-barrel domain CU052_22230 PF00231 ATP synthase CU052_22235 PF02874 ATP synthase alpha/beta family, beta-barrel domain CU052_22235 PF00306 ATP synthase alpha/beta chain, C terminal domain CU052_22235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CU052_22240 PF00213 ATP synthase delta (OSCP) subunit CU052_22245 PF00430 ATP synthase B/B' CF(0) CU052_22250 PF00137 ATP synthase subunit C CU052_22255 PF00119 ATP synthase A chain CU052_22275 PF00092 von Willebrand factor type A domain CU052_22290 PF07726 ATPase family associated with various cellular activities (AAA) CU052_22290 PF17863 AAA lid domain CU052_22300 PF00884 Sulfatase CU052_22305 PF00884 Sulfatase CU052_22310 PF00486 Transcriptional regulatory protein, C terminal CU052_22310 PF00072 Response regulator receiver domain CU052_22315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_22315 PF00512 His Kinase A (phospho-acceptor) domain CU052_22315 PF00672 HAMP domain CU052_22315 PF16750 Sensor domain of 2-component histidine kinase CU052_22335 PF00512 His Kinase A (phospho-acceptor) domain CU052_22335 PF00072 Response regulator receiver domain CU052_22335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_22335 PF00672 HAMP domain CU052_22335 PF01627 Hpt domain CU052_22340 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CU052_22345 PF02142 MGS-like domain CU052_22350 PF13361 UvrD-like helicase C-terminal domain CU052_22350 PF00580 UvrD/REP helicase N-terminal domain CU052_22350 PF12462 DNA helicase IV / RNA helicase N terminal CU052_22355 PF12805 FUSC-like inner membrane protein yccS CU052_22390 PF12843 Putative quorum-sensing-regulated virulence factor CU052_22425 PF01329 Pterin 4 alpha carbinolamine dehydratase CU052_22430 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CU052_22440 PF13193 AMP-binding enzyme C-terminal domain CU052_22440 PF00501 AMP-binding enzyme CU052_22450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_22450 PF03466 LysR substrate binding domain CU052_22460 PF00892 EamA-like transporter family CU052_22475 PF00465 Iron-containing alcohol dehydrogenase CU052_22480 PF07995 Glucose / Sorbosone dehydrogenase CU052_22485 PF02016 LD-carboxypeptidase N-terminal domain CU052_22485 PF17676 LD-carboxypeptidase C-terminal domain CU052_22495 PF00210 Ferritin-like domain CU052_22500 PF00672 HAMP domain CU052_22500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_22500 PF17200 Single Cache domain 2 CU052_22525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_22525 PF00072 Response regulator receiver domain CU052_22530 PF02321 Outer membrane efflux protein CU052_22535 PF00664 ABC transporter transmembrane region CU052_22535 PF00005 ABC transporter CU052_22535 PF03412 Peptidase C39 family CU052_22540 PF00005 ABC transporter CU052_22550 PF00140 Sigma-70 factor, region 1.2 CU052_22550 PF04542 Sigma-70 region 2 CU052_22550 PF04545 Sigma-70, region 4 CU052_22550 PF04539 Sigma-70 region 3 CU052_22560 PF00005 ABC transporter CU052_22560 PF12704 MacB-like periplasmic core domain CU052_22560 PF02687 FtsX-like permease family CU052_22565 PF12704 MacB-like periplasmic core domain CU052_22565 PF00005 ABC transporter CU052_22565 PF02687 FtsX-like permease family CU052_22580 PF00990 Diguanylate cyclase, GGDEF domain CU052_22590 PF03889 Alternative ribosome-rescue factor A CU052_22595 PF00313 'Cold-shock' DNA-binding domain CU052_22635 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CU052_22660 PF03524 Conjugal transfer protein CU052_22665 PF03743 Bacterial conjugation TrbI-like protein CU052_22670 PF00437 Type II/IV secretion system protein CU052_22675 PF02534 Type IV secretory system Conjugative DNA transfer CU052_22695 PF00378 Enoyl-CoA hydratase/isomerase CU052_22705 PF00550 Phosphopantetheine attachment site CU052_22705 PF13193 AMP-binding enzyme C-terminal domain CU052_22705 PF00501 AMP-binding enzyme CU052_22705 PF00668 Condensation domain CU052_22715 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CU052_22715 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CU052_22720 PF03608 PTS system enzyme II sorbitol-specific factor CU052_22725 PF08220 DeoR-like helix-turn-helix domain CU052_22725 PF00455 DeoR C terminal sensor domain CU052_22730 PF06923 Glucitol operon activator protein (GutM) CU052_22735 PF00106 short chain dehydrogenase CU052_22740 PF03829 PTS system glucitol/sorbitol-specific IIA component CU052_22745 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CU052_22745 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CU052_22750 PF03608 PTS system enzyme II sorbitol-specific factor CU052_22755 PF00571 CBS domain CU052_22755 PF01380 SIS domain CU052_22775 PF08239 Bacterial SH3 domain CU052_22775 PF00069 Protein kinase domain CU052_22800 PF16697 Inner membrane component of T3SS, cytoplasmic domain CU052_22820 PF07478 D-ala D-ala ligase C-terminus CU052_22825 PF10431 C-terminal, D2-small domain, of ClpB protein CU052_22825 PF00004 ATPase family associated with various cellular activities (AAA) CU052_22825 PF07724 AAA domain (Cdc48 subfamily) CU052_22825 PF17871 AAA lid domain CU052_22975 PF02369 Bacterial Ig-like domain (group 1) CU052_22975 PF11924 Inverse autotransporter, beta-domain CU052_22975 PF09134 Invasin, domain 3 CU052_22985 PF11922 Domain of unknown function (DUF3440) CU052_22985 PF01507 Phosphoadenosine phosphosulfate reductase family CU052_22990 PF02195 ParB-like nuclease domain CU052_23020 PF05656 Protein of unknown function (DUF805) CU052_23045 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CU052_23050 PF02899 Phage integrase, N-terminal SAM-like domain CU052_23050 PF00589 Phage integrase family CU052_23060 PF13488 Glycine zipper CU052_23060 PF00691 OmpA family CU052_23070 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CU052_23070 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CU052_23095 PF00072 Response regulator receiver domain CU052_23095 PF00196 Bacterial regulatory proteins, luxR family CU052_23100 PF13419 Haloacid dehalogenase-like hydrolase CU052_23105 PF00472 RF-1 domain CU052_23110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_23110 PF00672 HAMP domain CU052_23110 PF12729 Four helix bundle sensory module for signal transduction CU052_23115 PF00873 AcrB/AcrD/AcrF family CU052_23120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_23125 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CU052_23130 PF07687 Peptidase dimerisation domain CU052_23130 PF01546 Peptidase family M20/M25/M40 CU052_23145 PF00072 Response regulator receiver domain CU052_23145 PF00196 Bacterial regulatory proteins, luxR family CU052_23150 PF07730 Histidine kinase CU052_23150 PF00672 HAMP domain CU052_23150 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CU052_23150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_23155 PF12838 4Fe-4S dicluster domain CU052_23155 PF13187 4Fe-4S dicluster domain CU052_23165 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CU052_23165 PF01568 Molydopterin dinucleotide binding domain CU052_23165 PF00384 Molybdopterin oxidoreductase CU052_23170 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CU052_23175 PF03264 NapC/NirT cytochrome c family, N-terminal region CU052_23190 PF00561 alpha/beta hydrolase fold CU052_23190 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CU052_23200 PF00108 Thiolase, N-terminal domain CU052_23200 PF02803 Thiolase, C-terminal domain CU052_23205 PF00106 short chain dehydrogenase CU052_23210 PF01810 LysE type translocator CU052_23220 PF02355 Protein export membrane protein CU052_23220 PF07549 SecD/SecF GG Motif CU052_23225 PF13721 SecD export protein N-terminal TM region CU052_23225 PF02355 Protein export membrane protein CU052_23225 PF07549 SecD/SecF GG Motif CU052_23255 PF01037 Lrp/AsnC ligand binding domain CU052_23270 PF00072 Response regulator receiver domain CU052_23270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_23270 PF09308 LuxQ, periplasmic CU052_23270 PF00512 His Kinase A (phospho-acceptor) domain CU052_23275 PF13407 Periplasmic binding protein domain CU052_23280 PF01541 GIY-YIG catalytic domain CU052_23285 PF04337 Protein of unknown function, DUF480 CU052_23295 PF04363 Protein of unknown function (DUF496) CU052_23300 PF01554 MatE CU052_23305 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CU052_23310 PF02371 Transposase IS116/IS110/IS902 family CU052_23310 PF01548 Transposase CU052_23315 PF00072 Response regulator receiver domain CU052_23315 PF01627 Hpt domain CU052_23315 PF00512 His Kinase A (phospho-acceptor) domain CU052_23315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CU052_23315 PF00672 HAMP domain CU052_23315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_23320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CU052_23320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CU052_23335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_23335 PF03466 LysR substrate binding domain CU052_23345 PF13404 AsnC-type helix-turn-helix domain CU052_23345 PF01037 Lrp/AsnC ligand binding domain CU052_23350 PF13520 Amino acid permease CU052_23355 PF00392 Bacterial regulatory proteins, gntR family CU052_23355 PF00155 Aminotransferase class I and II CU052_23365 PF00512 His Kinase A (phospho-acceptor) domain CU052_23365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_23365 PF00672 HAMP domain CU052_23365 PF16527 Two-component sensor protein CpxA, periplasmic domain CU052_23370 PF00072 Response regulator receiver domain CU052_23370 PF00486 Transcriptional regulatory protein, C terminal CU052_23385 PF12833 Helix-turn-helix domain CU052_23395 PF00529 HlyD membrane-fusion protein of T1SS CU052_23395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_23400 PF03109 ABC1 family CU052_23405 PF01769 Divalent cation transporter CU052_23405 PF03448 MgtE intracellular N domain CU052_23405 PF00571 CBS domain CU052_23410 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CU052_23415 PF07969 Amidohydrolase family CU052_23430 PF01966 HD domain CU052_23445 PF07690 Major Facilitator Superfamily CU052_23455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CU052_23460 PF00255 Glutathione peroxidase CU052_23475 PF01323 DSBA-like thioredoxin domain CU052_23490 PF00106 short chain dehydrogenase CU052_23495 PF07963 Prokaryotic N-terminal methylation motif CU052_23495 PF00114 Pilin (bacterial filament) CU052_23500 PF07729 FCD domain CU052_23500 PF00392 Bacterial regulatory proteins, gntR family CU052_23505 PF00890 FAD binding domain CU052_23505 PF04205 FMN-binding domain CU052_23510 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CU052_23510 PF13378 Enolase C-terminal domain-like CU052_23515 PF02028 BCCT, betaine/carnitine/choline family transporter CU052_23520 PF00072 Response regulator receiver domain CU052_23520 PF00486 Transcriptional regulatory protein, C terminal CU052_23525 PF00672 HAMP domain CU052_23525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_23525 PF00512 His Kinase A (phospho-acceptor) domain CU052_23535 PF01219 Prokaryotic diacylglycerol kinase CU052_23540 PF08019 Phosphoethanolamine transferase EptA/EptB CU052_23540 PF00884 Sulfatase CU052_23545 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CU052_23550 PF12833 Helix-turn-helix domain CU052_23550 PF01965 DJ-1/PfpI family CU052_23555 PF00857 Isochorismatase family CU052_23565 PF07690 Major Facilitator Superfamily CU052_23585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_23585 PF03466 LysR substrate binding domain CU052_23625 PF01467 Cytidylyltransferase-like CU052_23630 PF02540 NAD synthase CU052_23635 PF03476 MOSC N-terminal beta barrel domain CU052_23635 PF03476 MOSC N-terminal beta barrel domain CU052_23635 PF00111 2Fe-2S iron-sulfur cluster binding domain CU052_23635 PF00111 2Fe-2S iron-sulfur cluster binding domain CU052_23635 PF03473 MOSC domain CU052_23635 PF03473 MOSC domain CU052_23640 PF01679 Proteolipid membrane potential modulator CU052_23650 PF01979 Amidohydrolase family CU052_23655 PF05661 Protein of unknown function (DUF808) CU052_23665 PF12833 Helix-turn-helix domain CU052_23665 PF00072 Response regulator receiver domain CU052_23680 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CU052_23680 PF01464 Transglycosylase SLT domain CU052_23725 PF00528 Binding-protein-dependent transport system inner membrane component CU052_23730 PF00528 Binding-protein-dependent transport system inner membrane component CU052_23730 PF14785 Maltose transport system permease protein MalF P2 domain CU052_23735 PF01547 Bacterial extracellular solute-binding protein CU052_23745 PF08402 TOBE domain CU052_23745 PF00005 ABC transporter CU052_23750 PF02397 Bacterial sugar transferase CU052_23765 PF13614 AAA domain CU052_23765 PF13807 G-rich domain on putative tyrosine kinase CU052_23765 PF02706 Chain length determinant protein CU052_23775 PF00534 Glycosyl transferases group 1 CU052_23775 PF13439 Glycosyltransferase Family 4 CU052_23805 PF00440 Bacterial regulatory proteins, tetR family CU052_23805 PF16925 Tetracyclin repressor-like, C-terminal domain CU052_23810 PF16884 N-terminal domain of oxidoreductase CU052_23810 PF00107 Zinc-binding dehydrogenase CU052_23820 PF06628 Catalase-related immune-responsive CU052_23820 PF00199 Catalase CU052_23825 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CU052_23825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CU052_23835 PF03466 LysR substrate binding domain CU052_23835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_23845 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CU052_23855 PF12833 Helix-turn-helix domain CU052_23860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CU052_23860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CU052_23865 PF01238 Phosphomannose isomerase type I CU052_23875 PF03466 LysR substrate binding domain CU052_23875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_23880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_23880 PF00529 HlyD membrane-fusion protein of T1SS CU052_23885 PF11742 Protein of unknown function (DUF3302) CU052_23900 PF18113 Rubredoxin binding C-terminal domain CU052_23900 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_23905 PF00753 Metallo-beta-lactamase superfamily CU052_23905 PF00258 Flavodoxin CU052_23905 PF00301 Rubredoxin CU052_23910 PF01590 GAF domain CU052_23910 PF00158 Sigma-54 interaction domain CU052_23915 PF13419 Haloacid dehalogenase-like hydrolase CU052_23925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_23925 PF03466 LysR substrate binding domain CU052_23930 PF12833 Helix-turn-helix domain CU052_23930 PF01497 Periplasmic binding protein CU052_23935 PF00155 Aminotransferase class I and II CU052_23955 PF03099 Biotin/lipoate A/B protein ligase family CU052_23965 PF00535 Glycosyl transferase family 2 CU052_23975 PF00271 Helicase conserved C-terminal domain CU052_23975 PF00270 DEAD/DEAH box helicase CU052_23990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_23990 PF03466 LysR substrate binding domain CU052_24010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_24010 PF03466 LysR substrate binding domain CU052_24020 PF07690 Major Facilitator Superfamily CU052_24030 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CU052_24045 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CU052_24065 PF03466 LysR substrate binding domain CU052_24065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_24075 PF00990 Diguanylate cyclase, GGDEF domain CU052_24075 PF13185 GAF domain CU052_24075 PF00563 EAL domain CU052_24080 PF17763 Glutaminase/Asparaginase C-terminal domain CU052_24080 PF00710 Asparaginase, N-terminal CU052_24085 PF03618 Kinase/pyrophosphorylase CU052_24090 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CU052_24090 PF00391 PEP-utilising enzyme, mobile domain CU052_24090 PF02896 PEP-utilising enzyme, TIM barrel domain CU052_24100 PF00072 Response regulator receiver domain CU052_24100 PF00196 Bacterial regulatory proteins, luxR family CU052_24105 PF00579 tRNA synthetases class I (W and Y) CU052_24120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_24120 PF03466 LysR substrate binding domain CU052_24125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_24130 PF00873 AcrB/AcrD/AcrF family CU052_24135 PF02321 Outer membrane efflux protein CU052_24140 PF02600 Disulfide bond formation protein DsbB CU052_24145 PF03616 Sodium/glutamate symporter CU052_24160 PF00990 Diguanylate cyclase, GGDEF domain CU052_24160 PF00563 EAL domain CU052_24160 PF03707 Bacterial signalling protein N terminal repeat CU052_24170 PF00196 Bacterial regulatory proteins, luxR family CU052_24175 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CU052_24175 PF00703 Glycosyl hydrolases family 2 CU052_24175 PF02837 Glycosyl hydrolases family 2, sugar binding domain CU052_24175 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CU052_24180 PF02028 BCCT, betaine/carnitine/choline family transporter CU052_24235 PF00873 AcrB/AcrD/AcrF family CU052_24245 PF13091 PLD-like domain CU052_24280 PF09278 MerR, DNA binding CU052_24280 PF00376 MerR family regulatory protein CU052_24285 PF00194 Eukaryotic-type carbonic anhydrase CU052_24290 PF11008 Protein of unknown function (DUF2846) CU052_24300 PF00293 NUDIX domain CU052_24315 PF08240 Alcohol dehydrogenase GroES-like domain CU052_24315 PF00107 Zinc-binding dehydrogenase CU052_24320 PF00155 Aminotransferase class I and II CU052_24325 PF00563 EAL domain CU052_24325 PF03707 Bacterial signalling protein N terminal repeat CU052_24325 PF00990 Diguanylate cyclase, GGDEF domain CU052_24330 PF00497 Bacterial extracellular solute-binding proteins, family 3 CU052_24335 PF00266 Aminotransferase class-V CU052_24340 PF00072 Response regulator receiver domain CU052_24340 PF13426 PAS domain CU052_24340 PF08448 PAS fold CU052_24340 PF00512 His Kinase A (phospho-acceptor) domain CU052_24340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_24345 PF00072 Response regulator receiver domain CU052_24345 PF00486 Transcriptional regulatory protein, C terminal CU052_24365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_24365 PF03466 LysR substrate binding domain CU052_24370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CU052_24405 PF03466 LysR substrate binding domain CU052_24405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_24415 PF00563 EAL domain CU052_24415 PF05231 MASE1 CU052_24425 PF18269 T3SS EscN ATPase C-terminal domain CU052_24425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CU052_24435 PF01706 FliG C-terminal domain CU052_24435 PF14841 FliG middle domain CU052_24435 PF14842 FliG N-terminal domain CU052_24440 PF08345 Flagellar M-ring protein C-terminal CU052_24440 PF01514 Secretory protein of YscJ/FliF family CU052_24445 PF02049 Flagellar hook-basal body complex protein FliE CU052_24450 PF00158 Sigma-54 interaction domain CU052_24450 PF02954 Bacterial regulatory protein, Fis family CU052_24450 PF00072 Response regulator receiver domain CU052_24465 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CU052_24470 PF00813 FliP family CU052_24475 PF01313 Bacterial export proteins, family 3 CU052_24480 PF01311 Bacterial export proteins, family 1 CU052_24485 PF01312 FlhB HrpN YscU SpaS Family CU052_24490 PF00771 FHIPEP family CU052_24500 PF00700 Bacterial flagellin C-terminal helical region CU052_24500 PF00669 Bacterial flagellin N-terminal helical region CU052_24510 PF02465 Flagellar hook-associated protein 2 N-terminus CU052_24510 PF07196 Flagellin hook IN motif CU052_24510 PF07195 Flagellar hook-associated protein 2 C-terminus CU052_24515 PF02561 Flagellar protein FliS CU052_24530 PF03748 Flagellar basal body-associated protein FliL CU052_24535 PF04545 Sigma-70, region 4 CU052_24535 PF04542 Sigma-70 region 2 CU052_24540 PF01618 MotA/TolQ/ExbB proton channel family CU052_24545 PF00691 OmpA family CU052_24545 PF13677 Membrane MotB of proton-channel complex MotA/MotB CU052_24570 PF08000 Bacterial PH domain CU052_24580 PF00497 Bacterial extracellular solute-binding proteins, family 3 CU052_24595 PF04205 FMN-binding domain CU052_24605 PF00578 AhpC/TSA family CU052_24610 PF00005 ABC transporter CU052_24630 PF10634 Fe2+ transport protein CU052_24635 PF03239 Iron permease FTR1 family CU052_24655 PF08241 Methyltransferase domain CU052_24670 PF18500 CadC C-terminal domain 1 CU052_24670 PF00486 Transcriptional regulatory protein, C terminal CU052_24675 PF03471 Transporter associated domain CU052_24675 PF03741 Integral membrane protein TerC family CU052_24690 PF01070 FMN-dependent dehydrogenase CU052_24710 PF00669 Bacterial flagellin N-terminal helical region CU052_24715 PF00460 Flagella basal body rod protein CU052_24715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CU052_24720 PF10135 Rod binding protein CU052_24720 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CU052_24725 PF02119 Flagellar P-ring protein CU052_24730 PF02107 Flagellar L-ring protein CU052_24735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CU052_24735 PF00460 Flagella basal body rod protein CU052_24740 PF00460 Flagella basal body rod protein CU052_24740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CU052_24745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CU052_24745 PF07559 Flagellar basal body protein FlaE CU052_24745 PF00460 Flagella basal body rod protein CU052_24750 PF03963 Flagellar hook capping protein - N-terminal region CU052_24750 PF13860 FlgD Ig-like domain CU052_24750 PF13861 FlgD Tudor-like domain CU052_24755 PF00460 Flagella basal body rod protein CU052_24755 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CU052_24760 PF00460 Flagella basal body rod protein CU052_24780 PF01464 Transglycosylase SLT domain CU052_24780 PF01476 LysM domain CU052_24815 PF03313 Serine dehydratase alpha chain CU052_24815 PF03315 Serine dehydratase beta chain CU052_24820 PF00854 POT family CU052_24825 PF01566 Natural resistance-associated macrophage protein CU052_24835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_24835 PF03466 LysR substrate binding domain CU052_24845 PF03466 LysR substrate binding domain CU052_24845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_24850 PF00691 OmpA family CU052_24850 PF01389 OmpA-like transmembrane domain CU052_24855 PF18027 Cytosolic carboxypeptidase N-terminal domain CU052_24855 PF00246 Zinc carboxypeptidase CU052_24860 PF01266 FAD dependent oxidoreductase CU052_24875 PF04393 Protein of unknown function (DUF535) CU052_24890 PF00392 Bacterial regulatory proteins, gntR family CU052_24890 PF07702 UTRA domain CU052_24895 PF00528 Binding-protein-dependent transport system inner membrane component CU052_24900 PF00005 ABC transporter CU052_24910 PF00266 Aminotransferase class-V CU052_24920 PF13419 Haloacid dehalogenase-like hydrolase CU052_24925 PF00356 Bacterial regulatory proteins, lacI family CU052_24930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CU052_24940 PF03611 PTS system sugar-specific permease component CU052_24955 PF00657 GDSL-like Lipase/Acylhydrolase CU052_24990 PF13419 Haloacid dehalogenase-like hydrolase CU052_24995 PF03466 LysR substrate binding domain CU052_24995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_25035 PF12464 Maltose acetyltransferase CU052_25035 PF14602 Hexapeptide repeat of succinyl-transferase CU052_25040 PF02566 OsmC-like protein CU052_25070 PF02566 OsmC-like protein CU052_25075 PF01625 Peptide methionine sulfoxide reductase CU052_25075 PF01641 SelR domain CU052_25090 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CU052_25095 PF00875 DNA photolyase CU052_25095 PF03441 FAD binding domain of DNA photolyase CU052_25100 PF00990 Diguanylate cyclase, GGDEF domain CU052_25115 PF00990 Diguanylate cyclase, GGDEF domain CU052_25115 PF05230 MASE2 domain CU052_25135 PF00483 Nucleotidyl transferase CU052_25140 PF07670 Nucleoside recognition CU052_25140 PF07662 Na+ dependent nucleoside transporter C-terminus CU052_25140 PF01773 Na+ dependent nucleoside transporter N-terminus CU052_25160 PF01212 Beta-eliminating lyase CU052_25165 PF03116 NQR2, RnfD, RnfE family CU052_25180 PF00182 Chitinase class I CU052_25190 PF01266 FAD dependent oxidoreductase CU052_25215 PF05525 Branched-chain amino acid transport protein CU052_25220 PF00072 Response regulator receiver domain CU052_25220 PF02954 Bacterial regulatory protein, Fis family CU052_25220 PF00158 Sigma-54 interaction domain CU052_25225 PF02743 Cache domain CU052_25225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_25225 PF00512 His Kinase A (phospho-acceptor) domain CU052_25230 PF00232 Glycosyl hydrolase family 1 CU052_25255 PF03466 LysR substrate binding domain CU052_25255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_25265 PF12706 Beta-lactamase superfamily domain CU052_25280 PF18030 RimK PreATP-grasp domain CU052_25280 PF08443 RimK-like ATP-grasp domain CU052_25285 PF18030 RimK PreATP-grasp domain CU052_25285 PF08443 RimK-like ATP-grasp domain CU052_25290 PF00753 Metallo-beta-lactamase superfamily CU052_25295 PF17810 Arginine decarboxylase helical bundle domain CU052_25295 PF17944 Arginine decarboxylase C-terminal helical extension CU052_25295 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CU052_25300 PF00491 Arginase family CU052_25305 PF07690 Major Facilitator Superfamily CU052_25310 PF00326 Prolyl oligopeptidase family CU052_25310 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CU052_25330 PF00950 ABC 3 transport family CU052_25335 PF00005 ABC transporter CU052_25340 PF01297 Zinc-uptake complex component A periplasmic CU052_25385 PF02472 Biopolymer transport protein ExbD/TolR CU052_25390 PF01618 MotA/TolQ/ExbB proton channel family CU052_25395 PF01618 MotA/TolQ/ExbB proton channel family CU052_25405 PF07715 TonB-dependent Receptor Plug Domain CU052_25405 PF00593 TonB dependent receptor CU052_25410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_25410 PF00512 His Kinase A (phospho-acceptor) domain CU052_25410 PF16750 Sensor domain of 2-component histidine kinase CU052_25410 PF00672 HAMP domain CU052_25415 PF00072 Response regulator receiver domain CU052_25415 PF00486 Transcriptional regulatory protein, C terminal CU052_25425 PF03009 Glycerophosphoryl diester phosphodiesterase family CU052_25435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CU052_25435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CU052_25440 PF10928 Protein of unknown function (DUF2810) CU052_25485 PF04013 Putative SAM-dependent RNA methyltransferase CU052_25490 PF01523 Putative modulator of DNA gyrase CU052_25495 PF01523 Putative modulator of DNA gyrase CU052_25500 PF08543 Phosphomethylpyrimidine kinase CU052_25505 PF00005 ABC transporter CU052_25510 PF00528 Binding-protein-dependent transport system inner membrane component CU052_25515 PF09084 NMT1/THI5 like CU052_25520 PF03070 TENA/THI-4/PQQC family CU052_25525 PF02110 Hydroxyethylthiazole kinase family CU052_25530 PF02581 Thiamine monophosphate synthase CU052_25535 PF01569 PAP2 superfamily CU052_25540 PF00384 Molybdopterin oxidoreductase CU052_25540 PF18364 Molybdopterin oxidoreductase N-terminal domain CU052_25540 PF01568 Molydopterin dinucleotide binding domain CU052_25545 PF03264 NapC/NirT cytochrome c family, N-terminal region CU052_25575 PF00583 Acetyltransferase (GNAT) family CU052_25620 PF00155 Aminotransferase class I and II CU052_25620 PF00392 Bacterial regulatory proteins, gntR family CU052_25625 PF04231 Endonuclease I CU052_25630 PF00128 Alpha amylase, catalytic domain CU052_25630 PF02903 Alpha amylase, N-terminal ig-like domain CU052_25630 PF16657 Maltogenic Amylase, C-terminal domain CU052_25645 PF02264 LamB porin CU052_25650 PF00128 Alpha amylase, catalytic domain CU052_25650 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CU052_25655 PF00990 Diguanylate cyclase, GGDEF domain CU052_25660 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CU052_25660 PF14824 Sirohaem biosynthesis protein central CU052_25660 PF10414 Sirohaem synthase dimerisation region CU052_25665 PF17179 4Fe-4S dicluster domain CU052_25670 PF00175 Oxidoreductase NAD-binding domain CU052_25670 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CU052_25675 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CU052_25675 PF13187 4Fe-4S dicluster domain CU052_25675 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CU052_25695 PF07690 Major Facilitator Superfamily CU052_25710 PF00892 EamA-like transporter family CU052_25715 PF07715 TonB-dependent Receptor Plug Domain CU052_25715 PF00593 TonB dependent receptor CU052_25720 PF03466 LysR substrate binding domain CU052_25720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_25725 PF01497 Periplasmic binding protein CU052_25730 PF01032 FecCD transport family CU052_25735 PF01032 FecCD transport family CU052_25740 PF00005 ABC transporter CU052_25745 PF00440 Bacterial regulatory proteins, tetR family CU052_25745 PF08360 QacR-like protein, C-terminal region CU052_25755 PF13533 Biotin-lipoyl like CU052_25765 PF04225 Opacity-associated protein A LysM-like domain CU052_25765 PF01551 Peptidase family M23 CU052_25790 PF00675 Insulinase (Peptidase family M16) CU052_25790 PF05193 Peptidase M16 inactive domain CU052_25795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_25795 PF00672 HAMP domain CU052_25795 PF17200 Single Cache domain 2 CU052_25810 PF02566 OsmC-like protein CU052_25815 PF01047 MarR family CU052_25825 PF10417 C-terminal domain of 1-Cys peroxiredoxin CU052_25825 PF00578 AhpC/TSA family CU052_25830 PF07992 Pyridine nucleotide-disulphide oxidoreductase CU052_25830 PF13192 Thioredoxin domain CU052_25865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_25865 PF03466 LysR substrate binding domain CU052_25870 PF05221 S-adenosyl-L-homocysteine hydrolase CU052_25870 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CU052_25885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_25885 PF03466 LysR substrate binding domain CU052_25895 PF16657 Maltogenic Amylase, C-terminal domain CU052_25895 PF02903 Alpha amylase, N-terminal ig-like domain CU052_25895 PF00128 Alpha amylase, catalytic domain CU052_25900 PF01547 Bacterial extracellular solute-binding protein CU052_25935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CU052_25940 PF02743 Cache domain CU052_25940 PF00672 HAMP domain CU052_25940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_25950 PF01810 LysE type translocator CU052_25955 PF01037 Lrp/AsnC ligand binding domain CU052_25955 PF13404 AsnC-type helix-turn-helix domain CU052_25970 PF03475 3-alpha domain CU052_25970 PF03473 MOSC domain CU052_25975 PF13673 Acetyltransferase (GNAT) domain CU052_25985 PF06629 MltA-interacting protein MipA CU052_25990 PF00270 DEAD/DEAH box helicase CU052_25990 PF00271 Helicase conserved C-terminal domain CU052_26000 PF08281 Sigma-70, region 4 CU052_26000 PF04542 Sigma-70 region 2 CU052_26005 PF00155 Aminotransferase class I and II CU052_26020 PF13443 Cro/C1-type HTH DNA-binding domain CU052_26025 PF03786 D-mannonate dehydratase (UxuA) CU052_26030 PF00392 Bacterial regulatory proteins, gntR family CU052_26030 PF07729 FCD domain CU052_26035 PF03480 Bacterial extracellular solute-binding protein, family 7 CU052_26040 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CU052_26045 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CU052_26050 PF01232 Mannitol dehydrogenase Rossmann domain CU052_26050 PF08125 Mannitol dehydrogenase C-terminal domain CU052_26055 PF02614 Glucuronate isomerase CU052_26060 PF00294 pfkB family carbohydrate kinase CU052_26065 PF01081 KDPG and KHG aldolase CU052_26070 PF10688 Bacterial inner membrane protein CU052_26075 PF00440 Bacterial regulatory proteins, tetR family CU052_26080 PF00696 Amino acid kinase family CU052_26085 PF13520 Amino acid permease CU052_26090 PF04371 Porphyromonas-type peptidyl-arginine deiminase CU052_26095 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CU052_26095 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CU052_26100 PF01042 Endoribonuclease L-PSP CU052_26115 PF02656 Domain of unknown function (DUF202) CU052_26120 PF16347 Domain of unknown function (DUF4976) CU052_26120 PF00884 Sulfatase CU052_26135 PF01081 KDPG and KHG aldolase CU052_26140 PF00294 pfkB family carbohydrate kinase CU052_26150 PF04962 KduI/IolB family CU052_26155 PF00474 Sodium:solute symporter family CU052_26160 PF07470 Glycosyl Hydrolase Family 88 CU052_26165 PF02264 LamB porin CU052_26170 PF13186 Iron-sulfur cluster-binding domain CU052_26170 PF04055 Radical SAM superfamily CU052_26180 PF00478 IMP dehydrogenase / GMP reductase domain CU052_26180 PF00571 CBS domain CU052_26195 PF00664 ABC transporter transmembrane region CU052_26195 PF00005 ABC transporter CU052_26205 PF01037 Lrp/AsnC ligand binding domain CU052_26255 PF00474 Sodium:solute symporter family CU052_26265 PF01619 Proline dehydrogenase CU052_26265 PF00171 Aldehyde dehydrogenase family CU052_26265 PF14850 DNA-binding domain of Proline dehydrogenase CU052_26265 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CU052_26270 PF12833 Helix-turn-helix domain CU052_26280 PF01243 Pyridoxamine 5'-phosphate oxidase CU052_26280 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CU052_26285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_26285 PF00512 His Kinase A (phospho-acceptor) domain CU052_26285 PF02743 Cache domain CU052_26290 PF02954 Bacterial regulatory protein, Fis family CU052_26290 PF00072 Response regulator receiver domain CU052_26290 PF00158 Sigma-54 interaction domain CU052_26295 PF00529 HlyD membrane-fusion protein of T1SS CU052_26310 PF03412 Peptidase C39 family CU052_26310 PF00005 ABC transporter CU052_26310 PF00664 ABC transporter transmembrane region CU052_26325 PF03358 NADPH-dependent FMN reductase CU052_26330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CU052_26335 PF00246 Zinc carboxypeptidase CU052_26360 PF08281 Sigma-70, region 4 CU052_26360 PF04542 Sigma-70 region 2 CU052_26395 PF01618 MotA/TolQ/ExbB proton channel family CU052_26400 PF02472 Biopolymer transport protein ExbD/TolR CU052_26405 PF03544 Gram-negative bacterial TonB protein C-terminal CU052_26410 PF13718 GNAT acetyltransferase 2 CU052_26410 PF05127 Helicase CU052_26415 PF08775 ParB family CU052_26415 PF02195 ParB-like nuclease domain CU052_26420 PF13614 AAA domain CU052_26420 PF18607 ParA helix turn helix domain CU052_26435 PF00005 ABC transporter CU052_26435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_26440 PF00005 ABC transporter CU052_26440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CU052_26450 PF00925 GTP cyclohydrolase II CU052_26450 PF08719 Domain of unknown function (DUF1768) CU052_26460 PF00072 Response regulator receiver domain CU052_26460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_26460 PF00672 HAMP domain CU052_26460 PF17149 Periplasmic sensor domain found in signal transduction proteins CU052_26460 PF01627 Hpt domain CU052_26460 PF00512 His Kinase A (phospho-acceptor) domain CU052_26470 PF01709 Transcriptional regulator CU052_26475 PF01098 Cell cycle protein CU052_26490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CU052_26495 PF03466 LysR substrate binding domain CU052_26495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_26505 PF00005 ABC transporter CU052_26515 PF04986 Putative transposase CU052_26515 PF14319 Transposase zinc-binding domain CU052_26545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_26545 PF06580 Histidine kinase CU052_26545 PF07694 5TMR of 5TMR-LYT CU052_26545 PF13492 GAF domain CU052_26550 PF00072 Response regulator receiver domain CU052_26550 PF04397 LytTr DNA-binding domain CU052_26560 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CU052_26565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CU052_26565 PF00672 HAMP domain CU052_26565 PF17200 Single Cache domain 2 CU052_26580 PF00132 Bacterial transferase hexapeptide (six repeats) CU052_26585 PF03616 Sodium/glutamate symporter CU052_26600 PF00005 ABC transporter CU052_26605 PF00392 Bacterial regulatory proteins, gntR family CU052_26605 PF00155 Aminotransferase class I and II CU052_26610 PF03616 Sodium/glutamate symporter CU052_26620 PF00455 DeoR C terminal sensor domain CU052_26620 PF08220 DeoR-like helix-turn-helix domain CU052_26625 PF03611 PTS system sugar-specific permease component CU052_26630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CU052_26635 PF00596 Class II Aldolase and Adducin N-terminal domain CU052_26645 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CU052_26650 PF01261 Xylose isomerase-like TIM barrel CU052_26670 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CU052_26685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_26685 PF03466 LysR substrate binding domain CU052_26690 PF07681 DoxX CU052_26700 PF06029 AlkA N-terminal domain CU052_26700 PF00730 HhH-GPD superfamily base excision DNA repair protein CU052_26705 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CU052_26705 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CU052_26740 PF00005 ABC transporter CU052_26750 PF00455 DeoR C terminal sensor domain CU052_26750 PF08220 DeoR-like helix-turn-helix domain CU052_26755 PF00455 DeoR C terminal sensor domain CU052_26755 PF08220 DeoR-like helix-turn-helix domain CU052_26760 PF08013 Tagatose 6 phosphate kinase CU052_26765 PF01380 SIS domain CU052_26770 PF03830 PTS system sorbose subfamily IIB component CU052_26780 PF03613 PTS system mannose/fructose/sorbose family IID component CU052_26785 PF03610 PTS system fructose IIA component CU052_26790 PF01979 Amidohydrolase family CU052_26795 PF01116 Fructose-bisphosphate aldolase class-II CU052_26815 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CU052_26840 PF03600 Citrate transporter CU052_26860 PF08329 Chitinase A, N-terminal domain CU052_26860 PF00704 Glycosyl hydrolases family 18 CU052_26870 PF06865 Pyrimidine/purine nucleoside phosphorylase CU052_26880 PF00990 Diguanylate cyclase, GGDEF domain CU052_26880 PF00563 EAL domain CU052_26885 PF02264 LamB porin CU052_26890 PF00356 Bacterial regulatory proteins, lacI family CU052_26900 PF00528 Binding-protein-dependent transport system inner membrane component CU052_26905 PF00528 Binding-protein-dependent transport system inner membrane component CU052_26910 PF00232 Glycosyl hydrolase family 1 CU052_26915 PF17912 MalK OB fold domain CU052_26915 PF00005 ABC transporter CU052_26920 PF00356 Bacterial regulatory proteins, lacI family CU052_26925 PF01554 MatE CU052_26930 PF00849 RNA pseudouridylate synthase CU052_26935 PF01809 Putative membrane protein insertion efficiency factor CU052_26955 PF00990 Diguanylate cyclase, GGDEF domain CU052_26955 PF17152 Periplasmic sensor domain CU052_26965 PF05656 Protein of unknown function (DUF805) CU052_26975 PF00756 Putative esterase CU052_26980 PF00107 Zinc-binding dehydrogenase CU052_26980 PF08240 Alcohol dehydrogenase GroES-like domain CU052_26995 PF03466 LysR substrate binding domain CU052_26995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_27000 PF04954 Siderophore-interacting protein CU052_27000 PF08021 Siderophore-interacting FAD-binding domain CU052_27005 PF00326 Prolyl oligopeptidase family CU052_27010 PF01810 LysE type translocator CU052_27015 PF01037 Lrp/AsnC ligand binding domain CU052_27020 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CU052_27020 PF18416 N-acetylglucosamine binding protein domain 2 CU052_27030 PF00893 Small Multidrug Resistance protein CU052_27055 PF13599 Pentapeptide repeats (9 copies) CU052_27060 PF03922 OmpW family CU052_27065 PF16868 NMT1-like family CU052_27075 PF13533 Biotin-lipoyl like CU052_27080 PF07690 Major Facilitator Superfamily CU052_27090 PF12706 Beta-lactamase superfamily domain CU052_27115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CU052_27125 PF03974 Ecotin CU052_27130 PF12833 Helix-turn-helix domain CU052_27140 PF00593 TonB dependent receptor CU052_27140 PF07715 TonB-dependent Receptor Plug Domain CU052_27145 PF00664 ABC transporter transmembrane region CU052_27145 PF00005 ABC transporter CU052_27150 PF00664 ABC transporter transmembrane region CU052_27150 PF00005 ABC transporter CU052_27240 PF03466 LysR substrate binding domain CU052_27240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_27260 PF13419 Haloacid dehalogenase-like hydrolase CU052_27285 PF01979 Amidohydrolase family CU052_27295 PF13556 PucR C-terminal helix-turn-helix domain CU052_27295 PF05651 Putative sugar diacid recognition CU052_27295 PF17853 GGDEF-like domain CU052_27300 PF02595 Glycerate kinase family CU052_27305 PF11852 Domain of unknown function (DUF3372) CU052_27305 PF03714 Bacterial pullanase-associated domain CU052_27305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CU052_27305 PF18494 Pullulanase Ins domain CU052_27305 PF17967 Pullulanase N2 domain CU052_27320 PF01276 Orn/Lys/Arg decarboxylase, major domain CU052_27320 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CU052_27320 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CU052_27325 PF13520 Amino acid permease CU052_27335 PF08543 Phosphomethylpyrimidine kinase CU052_27345 PF01144 Coenzyme A transferase CU052_27350 PF01144 Coenzyme A transferase CU052_27355 PF00108 Thiolase, N-terminal domain CU052_27355 PF02803 Thiolase, C-terminal domain CU052_27360 PF01261 Xylose isomerase-like TIM barrel CU052_27370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_27370 PF03466 LysR substrate binding domain CU052_27375 PF00083 Sugar (and other) transporter CU052_27380 PF01261 Xylose isomerase-like TIM barrel CU052_27385 PF00205 Thiamine pyrophosphate enzyme, central domain CU052_27385 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CU052_27385 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CU052_27390 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CU052_27390 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CU052_27395 PF00294 pfkB family carbohydrate kinase CU052_27405 PF01116 Fructose-bisphosphate aldolase class-II CU052_27420 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CU052_27420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CU052_27425 PF00375 Sodium:dicarboxylate symporter family CU052_27430 PF03193 RsgA GTPase CU052_27435 PF00367 phosphotransferase system, EIIB CU052_27435 PF02378 Phosphotransferase system, EIIC CU052_27445 PF02630 SCO1/SenC CU052_27460 PF00196 Bacterial regulatory proteins, luxR family CU052_27460 PF17874 MalT-like TPR region CU052_27470 PF00343 Carbohydrate phosphorylase CU052_27480 PF02446 4-alpha-glucanotransferase CU052_27485 PF02806 Alpha amylase, C-terminal all-beta domain CU052_27485 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CU052_27485 PF00128 Alpha amylase, catalytic domain CU052_27490 PF00912 Transglycosylase CU052_27495 PF00128 Alpha amylase, catalytic domain CU052_27510 PF07670 Nucleoside recognition CU052_27515 PF07670 Nucleoside recognition CU052_27520 PF01546 Peptidase family M20/M25/M40 CU052_27520 PF07687 Peptidase dimerisation domain CU052_27525 PF06803 Protein of unknown function (DUF1232) CU052_27540 PF00375 Sodium:dicarboxylate symporter family CU052_27575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_27575 PF03466 LysR substrate binding domain CU052_27580 PF08803 Putative mono-oxygenase ydhR CU052_27590 PF02706 Chain length determinant protein CU052_27590 PF13807 G-rich domain on putative tyrosine kinase CU052_27590 PF13614 AAA domain CU052_27595 PF01451 Low molecular weight phosphotyrosine protein phosphatase CU052_27600 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CU052_27600 PF10531 SLBB domain CU052_27600 PF02563 Polysaccharide biosynthesis/export protein CU052_27605 PF00881 Nitroreductase family CU052_27610 PF01914 MarC family integral membrane protein CU052_27615 PF00455 DeoR C terminal sensor domain CU052_27615 PF08220 DeoR-like helix-turn-helix domain CU052_27620 PF07690 Major Facilitator Superfamily CU052_27625 PF02952 L-fucose isomerase, C-terminal domain CU052_27625 PF07882 L-fucose isomerase, second N-terminal domain CU052_27625 PF07881 L-fucose isomerase, first N-terminal domain CU052_27630 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CU052_27630 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CU052_27635 PF05025 RbsD / FucU transport protein family CU052_27640 PF00596 Class II Aldolase and Adducin N-terminal domain CU052_27645 PF00465 Iron-containing alcohol dehydrogenase CU052_27670 PF02469 Fasciclin domain CU052_27680 PF00875 DNA photolyase CU052_27680 PF03441 FAD binding domain of DNA photolyase CU052_27695 PF00317 Ribonucleotide reductase, all-alpha domain CU052_27695 PF02867 Ribonucleotide reductase, barrel domain CU052_27695 PF03477 ATP cone domain CU052_27700 PF00268 Ribonucleotide reductase, small chain CU052_27720 PF01809 Putative membrane protein insertion efficiency factor CU052_27730 PF00561 alpha/beta hydrolase fold CU052_27735 PF00768 D-alanyl-D-alanine carboxypeptidase CU052_27735 PF07943 Penicillin-binding protein 5, C-terminal domain CU052_27740 PF00128 Alpha amylase, catalytic domain CU052_27740 PF00686 Starch binding domain CU052_27750 PF00881 Nitroreductase family CU052_27760 PF03466 LysR substrate binding domain CU052_27760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_27765 PF09905 DNA-binding protein VF530 CU052_27775 PF00175 Oxidoreductase NAD-binding domain CU052_27775 PF00970 Oxidoreductase FAD-binding domain CU052_27790 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CU052_27795 PF01594 AI-2E family transporter CU052_27805 PF13533 Biotin-lipoyl like CU052_27825 PF00892 EamA-like transporter family CU052_27835 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CU052_27850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_27850 PF03466 LysR substrate binding domain CU052_27855 PF07690 Major Facilitator Superfamily CU052_27865 PF00583 Acetyltransferase (GNAT) family CU052_27875 PF00072 Response regulator receiver domain CU052_27875 PF00486 Transcriptional regulatory protein, C terminal CU052_27880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CU052_27880 PF00672 HAMP domain CU052_27880 PF00512 His Kinase A (phospho-acceptor) domain CU052_27895 PF00923 Transaldolase/Fructose-6-phosphate aldolase CU052_27910 PF13344 Haloacid dehalogenase-like hydrolase CU052_27910 PF00293 NUDIX domain CU052_27935 PF01654 Cytochrome bd terminal oxidase subunit I CU052_27950 PF05114 Protein of unknown function (DUF692) CU052_27965 PF02567 Phenazine biosynthesis-like protein CU052_27970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CU052_27985 PF12848 ABC transporter CU052_27985 PF00005 ABC transporter CU052_27990 PF09905 DNA-binding protein VF530 CU052_27995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_27995 PF03466 LysR substrate binding domain CU052_28000 PF03358 NADPH-dependent FMN reductase CU052_28005 PF13409 Glutathione S-transferase, N-terminal domain CU052_28010 PF00005 ABC transporter CU052_28010 PF12848 ABC transporter CU052_28025 PF03466 LysR substrate binding domain CU052_28025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_28030 PF13977 BetI-type transcriptional repressor, C-terminal CU052_28030 PF00440 Bacterial regulatory proteins, tetR family CU052_28045 PF00581 Rhodanese-like domain CU052_28050 PF01810 LysE type translocator CU052_28055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CU052_28055 PF03466 LysR substrate binding domain CU052_28095 PF14492 Elongation Factor G, domain II CU052_28095 PF03764 Elongation factor G, domain IV CU052_28095 PF00679 Elongation factor G C-terminus CU052_28095 PF00009 Elongation factor Tu GTP binding domain CU052_28115 PF00440 Bacterial regulatory proteins, tetR family CU052_28120 PF07690 Major Facilitator Superfamily CU052_28125 PF02909 Tetracyclin repressor-like, C-terminal domain CU052_28125 PF00440 Bacterial regulatory proteins, tetR family CU052_28180 PF13495 Phage integrase, N-terminal SAM-like domain CU052_28180 PF00589 Phage integrase family CU052_28185 PF14319 Transposase zinc-binding domain CU052_28185 PF04986 Putative transposase CU052_28195 PF00239 Resolvase, N terminal domain CU052_28195 PF02796 Helix-turn-helix domain of resolvase CU052_28210 PF04002 RadC-like JAB domain CU052_28215 PF07669 Eco57I restriction-modification methylase CU052_28220 PF06616 BsuBI/PstI restriction endonuclease domain CU052_28220 PF17728 BsuBI/PstI restriction endonuclease HTH domain CU052_28250 PF06122 Conjugative relaxosome accessory transposon protein CU052_28265 PF13693 Winged helix-turn-helix DNA-binding CU052_28350 PF01343 Peptidase family S49 CU052_28370 PF00565 Staphylococcal nuclease homologue CU052_28450 PF05593 RHS Repeat CU052_28450 PF03527 RHS protein CU052_28525 PF13599 Pentapeptide repeats (9 copies) CU052_28540 PF00186 Dihydrofolate reductase CU052_28575 PF13614 AAA domain CU052_28580 PF08535 KorB domain CU052_28580 PF06613 KorB C-terminal beta-barrel domain CU052_28580 PF02195 ParB-like nuclease domain CU052_28680 PF01751 Toprim domain CU052_28680 PF01131 DNA topoisomerase CU052_28765 PF13098 Thioredoxin-like domain CU052_28765 PF10411 Disulfide bond isomerase protein N-terminus CU052_28780 PF10502 Signal peptidase, peptidase S26 CU052_28785 PF12477 Sex factor F TraW protein N terminal CU052_28830 PF07728 AAA domain (dynein-related subfamily) CU052_28830 PF08406 CbbQ/NirQ/NorQ C-terminal CU052_28890 PF00111 2Fe-2S iron-sulfur cluster binding domain CU052_28925 PF01206 Sulfurtransferase TusA CU052_29085 PF00589 Phage integrase family CU052_29085 PF02899 Phage integrase, N-terminal SAM-like domain CU052_29110 PF08378 Nuclease-related domain CU052_29120 PF01076 Plasmid recombination enzyme CU052_29140 PF00809 Pterin binding enzyme CU052_29145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CU052_29145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CU052_29145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CU052_29145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CU052_29160 PF03466 LysR substrate binding domain CU052_29160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family