locus-tag class description AL538_00010 PF02954 Bacterial regulatory protein, Fis family AL538_00010 PF00072 Response regulator receiver domain AL538_00010 PF00158 Sigma-54 interaction domain AL538_00025 PF02563 Polysaccharide biosynthesis/export protein AL538_00025 PF10531 SLBB domain AL538_00030 PF00691 OmpA family AL538_00035 PF01740 STAS domain AL538_00040 PF01068 ATP dependent DNA ligase domain AL538_00040 PF14743 DNA ligase OB-like domain AL538_00050 PF01554 MatE AL538_00055 PF00677 Lumazine binding domain AL538_00070 PF01339 CheB methylesterase AL538_00070 PF00072 Response regulator receiver domain AL538_00075 PF05230 MASE2 domain AL538_00075 PF00990 Diguanylate cyclase, GGDEF domain AL538_00085 PF00816 H-NS histone family AL538_00105 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL538_00110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_00120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_00150 PF07434 CblD like pilus biogenesis initiator AL538_00165 PF00465 Iron-containing alcohol dehydrogenase AL538_00170 PF01116 Fructose-bisphosphate aldolase class-II AL538_00175 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL538_00175 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL538_00180 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL538_00180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL538_00185 PF00107 Zinc-binding dehydrogenase AL538_00185 PF08240 Alcohol dehydrogenase GroES-like domain AL538_00195 PF16385 Domain of unknown function AL538_00195 PF00884 Sulfatase AL538_00200 PF13186 Iron-sulfur cluster-binding domain AL538_00200 PF04055 Radical SAM superfamily AL538_00205 PF17863 AAA lid domain AL538_00205 PF07726 ATPase family associated with various cellular activities (AAA) AL538_00220 PF00092 von Willebrand factor type A domain AL538_00275 PF04002 RadC-like JAB domain AL538_00310 PF00270 DEAD/DEAH box helicase AL538_00310 PF00271 Helicase conserved C-terminal domain AL538_00310 PF18019 HD domain AL538_00330 PF09704 CRISPR-associated protein (Cas_Cas5) AL538_00335 PF08798 CRISPR associated protein AL538_00340 PF01867 CRISPR associated protein Cas1 AL538_00345 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) AL538_00400 PF00771 FHIPEP family AL538_00405 PF01312 FlhB HrpN YscU SpaS Family AL538_00435 PF00486 Transcriptional regulatory protein, C terminal AL538_00450 PF00813 FliP family AL538_00470 PF18269 T3SS EscN ATPase C-terminal domain AL538_00470 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL538_00470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL538_00515 PF00877 NlpC/P60 family AL538_00520 PF12729 Four helix bundle sensory module for signal transduction AL538_00520 PF00672 HAMP domain AL538_00520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_00525 PF01609 Transposase DDE domain AL538_00525 PF13006 Insertion element 4 transposase N-terminal AL538_00570 PF00480 ROK family AL538_00580 PF03453 MoeA N-terminal region (domain I and II) AL538_00580 PF03454 MoeA C-terminal region (domain IV) AL538_00580 PF00994 Probable molybdopterin binding domain AL538_00585 PF12804 MobA-like NTP transferase domain AL538_00590 PF00005 ABC transporter AL538_00590 PF08402 TOBE domain AL538_00595 PF00528 Binding-protein-dependent transport system inner membrane component AL538_00600 PF12849 PBP superfamily domain AL538_00605 PF02954 Bacterial regulatory protein, Fis family AL538_00605 PF00158 Sigma-54 interaction domain AL538_00605 PF00072 Response regulator receiver domain AL538_00610 PF00512 His Kinase A (phospho-acceptor) domain AL538_00610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_00625 PF12848 ABC transporter AL538_00625 PF00005 ABC transporter AL538_00630 PF02634 FdhD/NarQ family AL538_00650 PF02613 Nitrate reductase delta subunit AL538_00660 PF00384 Molybdopterin oxidoreductase AL538_00660 PF01568 Molydopterin dinucleotide binding domain AL538_00660 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL538_00665 PF13247 4Fe-4S dicluster domain AL538_00685 PF02146 Sir2 family AL538_00690 PF13416 Bacterial extracellular solute-binding protein AL538_00695 PF13416 Bacterial extracellular solute-binding protein AL538_00700 PF00528 Binding-protein-dependent transport system inner membrane component AL538_00705 PF00528 Binding-protein-dependent transport system inner membrane component AL538_00710 PF00005 ABC transporter AL538_00710 PF08402 TOBE domain AL538_00720 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL538_00730 PF01171 PP-loop family AL538_00735 PF00582 Universal stress protein family AL538_00740 PF13545 Crp-like helix-turn-helix domain AL538_00740 PF00027 Cyclic nucleotide-binding domain AL538_00755 PF00403 Heavy-metal-associated domain AL538_00765 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL538_00765 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL538_00780 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL538_00795 PF00072 Response regulator receiver domain AL538_00795 PF09308 LuxQ, periplasmic AL538_00795 PF00512 His Kinase A (phospho-acceptor) domain AL538_00795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_00820 PF06303 MatP N-terminal domain AL538_00820 PF17414 MatP C-terminal ribbon-helix-helix domain AL538_00825 PF13654 AAA domain AL538_00825 PF05362 Lon protease (S16) C-terminal proteolytic domain AL538_00830 PF07977 FabA-like domain AL538_00835 PF04957 Ribosome modulation factor AL538_00855 PF10672 S-adenosylmethionine-dependent methyltransferase AL538_00855 PF02926 THUMP domain AL538_00855 PF01170 Putative RNA methylase family UPF0020 AL538_00860 PF07126 Cell-division protein ZapC AL538_00865 PF01180 Dihydroorotate dehydrogenase AL538_00870 PF05088 Bacterial NAD-glutamate dehydrogenase AL538_00875 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL538_00875 PF01433 Peptidase family M1 domain AL538_00875 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL538_00885 PF00595 PDZ domain AL538_00885 PF11818 C-terminal domain of tail specific protease (DUF3340) AL538_00885 PF03572 Peptidase family S41 AL538_00885 PF17804 Tail specific protease N-terminal domain AL538_00890 PF17516 ProQ C-terminal domain AL538_00890 PF04352 ProQ/FINO family AL538_00895 PF13185 GAF domain AL538_00900 PF00664 ABC transporter transmembrane region AL538_00900 PF00005 ABC transporter AL538_00905 PF04403 Paraquat-inducible protein A AL538_00910 PF02470 MlaD protein AL538_00915 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AL538_00915 PF01189 16S rRNA methyltransferase RsmB/F AL538_00915 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AL538_00935 PF00793 DAHP synthetase I family AL538_00940 PF04461 Protein of unknown function (DUF520) AL538_00945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL538_00945 PF10414 Sirohaem synthase dimerisation region AL538_00945 PF14824 Sirohaem biosynthesis protein central AL538_00950 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL538_00955 PF00528 Binding-protein-dependent transport system inner membrane component AL538_00960 PF00528 Binding-protein-dependent transport system inner membrane component AL538_00965 PF00005 ABC transporter AL538_00970 PF01027 Inhibitor of apoptosis-promoting Bax1 AL538_00975 PF04358 DsrC like protein AL538_00980 PF00708 Acylphosphatase AL538_00985 PF02743 Cache domain AL538_00985 PF00672 HAMP domain AL538_00985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_00990 PF10672 S-adenosylmethionine-dependent methyltransferase AL538_00990 PF17785 PUA-like domain AL538_01005 PF05736 OprF membrane domain AL538_01005 PF00691 OmpA family AL538_01010 PF00563 EAL domain AL538_01010 PF00990 Diguanylate cyclase, GGDEF domain AL538_01010 PF13188 PAS domain AL538_01010 PF03707 Bacterial signalling protein N terminal repeat AL538_01015 PF00072 Response regulator receiver domain AL538_01015 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL538_01015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_01015 PF00672 HAMP domain AL538_01015 PF01627 Hpt domain AL538_01015 PF00512 His Kinase A (phospho-acceptor) domain AL538_01030 PF00132 Bacterial transferase hexapeptide (six repeats) AL538_01030 PF12464 Maltose acetyltransferase AL538_01040 PF01928 CYTH domain AL538_01050 PF01047 MarR family AL538_01060 PF03729 Short repeat of unknown function (DUF308) AL538_01065 PF00924 Mechanosensitive ion channel AL538_01075 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AL538_01085 PF05736 OprF membrane domain AL538_01085 PF00691 OmpA family AL538_01120 PF00437 Type II/IV secretion system protein AL538_01135 PF13629 Pilus formation protein N terminal region AL538_01135 PF04972 BON domain AL538_01135 PF00263 Bacterial type II and III secretion system protein AL538_01155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_01155 PF03466 LysR substrate binding domain AL538_01160 PF12833 Helix-turn-helix domain AL538_01170 PF04151 Bacterial pre-peptidase C-terminal domain AL538_01170 PF08453 Peptidase family M9 N-terminal AL538_01170 PF01752 Collagenase AL538_01180 PF00582 Universal stress protein family AL538_01185 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL538_01185 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL538_01190 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL538_01195 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AL538_01195 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AL538_01200 PF12833 Helix-turn-helix domain AL538_01205 PF07715 TonB-dependent Receptor Plug Domain AL538_01205 PF00593 TonB dependent receptor AL538_01210 PF00072 Response regulator receiver domain AL538_01210 PF12431 Transcriptional regulator AL538_01215 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL538_01215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_01215 PF17203 Single cache domain 3 AL538_01215 PF00989 PAS fold AL538_01230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_01260 PF03466 LysR substrate binding domain AL538_01260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_01275 PF03264 NapC/NirT cytochrome c family, N-terminal region AL538_01290 PF02630 SCO1/SenC AL538_01295 PF08534 Redoxin AL538_01310 PF01794 Ferric reductase like transmembrane component AL538_01315 PF00174 Oxidoreductase molybdopterin binding domain AL538_01345 PF07729 FCD domain AL538_01345 PF00392 Bacterial regulatory proteins, gntR family AL538_01350 PF01810 LysE type translocator AL538_01360 PF05368 NmrA-like family AL538_01365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_01365 PF03466 LysR substrate binding domain AL538_01370 PF00082 Subtilase family AL538_01370 PF04151 Bacterial pre-peptidase C-terminal domain AL538_01370 PF05922 Peptidase inhibitor I9 AL538_01375 PF03150 Di-haem cytochrome c peroxidase AL538_01375 PF00034 Cytochrome c AL538_01385 PF00696 Amino acid kinase family AL538_01385 PF13840 ACT domain AL538_01390 PF06339 Ectoine synthase AL538_01395 PF00202 Aminotransferase class-III AL538_01400 PF00583 Acetyltransferase (GNAT) family AL538_01405 PF02028 BCCT, betaine/carnitine/choline family transporter AL538_01415 PF00571 CBS domain AL538_01420 PF01554 MatE AL538_01435 PF00884 Sulfatase AL538_01450 PF02311 AraC-like ligand binding domain AL538_01450 PF12833 Helix-turn-helix domain AL538_01465 PF01235 Sodium:alanine symporter family AL538_01470 PF00171 Aldehyde dehydrogenase family AL538_01475 PF01590 GAF domain AL538_01475 PF00158 Sigma-54 interaction domain AL538_01475 PF02954 Bacterial regulatory protein, Fis family AL538_01505 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AL538_01510 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase AL538_01515 PF04223 Citrate lyase, alpha subunit (CitF) AL538_01520 PF03328 HpcH/HpaI aldolase/citrate lyase family AL538_01525 PF06857 Malonate decarboxylase delta subunit (MdcD) AL538_01530 PF08218 Citrate lyase ligase C-terminal domain AL538_01535 PF03390 2-hydroxycarboxylate transporter family AL538_01540 PF04277 Oxaloacetate decarboxylase, gamma chain AL538_01545 PF02436 Conserved carboxylase domain AL538_01545 PF00682 HMGL-like AL538_01545 PF00364 Biotin-requiring enzyme AL538_01550 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL538_01555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_01555 PF17203 Single cache domain 3 AL538_01560 PF00072 Response regulator receiver domain AL538_01560 PF12431 Transcriptional regulator AL538_01585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL538_01600 PF00293 NUDIX domain AL538_01650 PF14497 Glutathione S-transferase, C-terminal domain AL538_01650 PF02798 Glutathione S-transferase, N-terminal domain AL538_01660 PF04209 homogentisate 1,2-dioxygenase AL538_01665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL538_01675 PF07687 Peptidase dimerisation domain AL538_01675 PF01546 Peptidase family M20/M25/M40 AL538_01680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL538_01685 PF00528 Binding-protein-dependent transport system inner membrane component AL538_01690 PF00528 Binding-protein-dependent transport system inner membrane component AL538_01690 PF12911 N-terminal TM domain of oligopeptide transport permease C AL538_01695 PF00005 ABC transporter AL538_01695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_01700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_01700 PF00005 ABC transporter AL538_01710 PF00041 Fibronectin type III domain AL538_01710 PF12561 ToxR activated gene A lipoprotein domain AL538_01715 PF08453 Peptidase family M9 N-terminal AL538_01715 PF01752 Collagenase AL538_01725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_01725 PF00512 His Kinase A (phospho-acceptor) domain AL538_01730 PF00072 Response regulator receiver domain AL538_01730 PF00486 Transcriptional regulatory protein, C terminal AL538_01740 PF00873 AcrB/AcrD/AcrF family AL538_01745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_01745 PF00529 HlyD membrane-fusion protein of T1SS AL538_01765 PF01048 Phosphorylase superfamily AL538_01770 PF00528 Binding-protein-dependent transport system inner membrane component AL538_01775 PF00528 Binding-protein-dependent transport system inner membrane component AL538_01780 PF00005 ABC transporter AL538_01780 PF08402 TOBE domain AL538_01785 PF00701 Dihydrodipicolinate synthetase family AL538_01790 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL538_01800 PF01593 Flavin containing amine oxidoreductase AL538_01805 PF05544 Proline racemase AL538_01810 PF00171 Aldehyde dehydrogenase family AL538_01815 PF00392 Bacterial regulatory proteins, gntR family AL538_01825 PF00990 Diguanylate cyclase, GGDEF domain AL538_01825 PF00072 Response regulator receiver domain AL538_01830 PF05971 RNA methyltransferase AL538_01835 PF01863 Protein of unknown function DUF45 AL538_01840 PF08334 Type II secretion system (T2SS), protein G AL538_01840 PF07963 Prokaryotic N-terminal methylation motif AL538_01850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_01865 PF03466 LysR substrate binding domain AL538_01865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_01870 PF07690 Major Facilitator Superfamily AL538_01920 PF00005 ABC transporter AL538_01925 PF01032 FecCD transport family AL538_01930 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL538_01940 PF00300 Histidine phosphatase superfamily (branch 1) AL538_01945 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AL538_01950 PF02654 Cobalamin-5-phosphate synthase AL538_01955 PF02277 Phosphoribosyltransferase AL538_01960 PF01613 Flavin reductase like domain AL538_01965 PF13460 NAD(P)H-binding AL538_01980 PF08411 Exonuclease C-terminal AL538_01980 PF00929 Exonuclease AL538_01985 PF03788 LrgA family AL538_01990 PF04172 LrgB-like family AL538_01995 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AL538_01995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL538_02000 PF02222 ATP-grasp domain AL538_02005 PF05724 Thiopurine S-methyltransferase (TPMT) AL538_02015 PF00216 Bacterial DNA-binding protein AL538_02055 PF03147 Ferredoxin-fold anticodon binding domain AL538_02055 PF03484 tRNA synthetase B5 domain AL538_02055 PF01588 Putative tRNA binding domain AL538_02055 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL538_02055 PF03483 B3/4 domain AL538_02060 PF01409 tRNA synthetases class II core domain (F) AL538_02060 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL538_02065 PF00990 Diguanylate cyclase, GGDEF domain AL538_02065 PF17158 Membrane-associated sensor, integral membrane domain AL538_02100 PF01906 Putative heavy-metal-binding AL538_02105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL538_02110 PF01042 Endoribonuclease L-PSP AL538_02115 PF00453 Ribosomal protein L20 AL538_02120 PF01632 Ribosomal protein L35 AL538_02125 PF05198 Translation initiation factor IF-3, N-terminal domain AL538_02125 PF00707 Translation initiation factor IF-3, C-terminal domain AL538_02130 PF02824 TGS domain AL538_02130 PF03129 Anticodon binding domain AL538_02130 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL538_02130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL538_02145 PF07702 UTRA domain AL538_02145 PF00392 Bacterial regulatory proteins, gntR family AL538_02150 PF01979 Amidohydrolase family AL538_02155 PF00491 Arginase family AL538_02160 PF01175 Urocanase Rossmann-like domain AL538_02160 PF17391 Urocanase N-terminal domain AL538_02160 PF17392 Urocanase C-terminal domain AL538_02165 PF00221 Aromatic amino acid lyase AL538_02180 PF01565 FAD binding domain AL538_02180 PF13183 4Fe-4S dicluster domain AL538_02180 PF02913 FAD linked oxidases, C-terminal domain AL538_02195 PF05736 OprF membrane domain AL538_02195 PF00691 OmpA family AL538_02215 PF01259 SAICAR synthetase AL538_02255 PF00583 Acetyltransferase (GNAT) family AL538_02490 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL538_02510 PF01844 HNH endonuclease AL538_02525 PF00043 Glutathione S-transferase, C-terminal domain AL538_02525 PF02798 Glutathione S-transferase, N-terminal domain AL538_02540 PF13006 Insertion element 4 transposase N-terminal AL538_02540 PF01609 Transposase DDE domain AL538_02620 PF13344 Haloacid dehalogenase-like hydrolase AL538_02620 PF00293 NUDIX domain AL538_02715 PF03575 Peptidase family S51 AL538_02745 PF08378 Nuclease-related domain AL538_02925 PF12464 Maltose acetyltransferase AL538_02925 PF14602 Hexapeptide repeat of succinyl-transferase AL538_02930 PF00589 Phage integrase family AL538_02930 PF13495 Phage integrase, N-terminal SAM-like domain AL538_02945 PF13302 Acetyltransferase (GNAT) domain AL538_02950 PF00158 Sigma-54 interaction domain AL538_02950 PF18024 Helix-turn-helix domain AL538_02955 PF05128 Domain of unknown function (DUF697) AL538_02960 PF04317 YcjX-like family, DUF463 AL538_02975 PF04715 Anthranilate synthase component I, N terminal region AL538_02975 PF00425 chorismate binding enzyme AL538_02980 PF00512 His Kinase A (phospho-acceptor) domain AL538_02980 PF09308 LuxQ, periplasmic AL538_02980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_02980 PF00072 Response regulator receiver domain AL538_02990 PF00293 NUDIX domain AL538_02995 PF03222 Tryptophan/tyrosine permease family AL538_03000 PF03315 Serine dehydratase beta chain AL538_03000 PF03313 Serine dehydratase alpha chain AL538_03005 PF03707 Bacterial signalling protein N terminal repeat AL538_03005 PF00990 Diguanylate cyclase, GGDEF domain AL538_03005 PF00563 EAL domain AL538_03005 PF13188 PAS domain AL538_03015 PF00196 Bacterial regulatory proteins, luxR family AL538_03015 PF00072 Response regulator receiver domain AL538_03020 PF01242 6-pyruvoyl tetrahydropterin synthase AL538_03025 PF00672 HAMP domain AL538_03025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_03025 PF17200 Single Cache domain 2 AL538_03030 PF00152 tRNA synthetases class II (D, K and N) AL538_03030 PF01336 OB-fold nucleic acid binding domain AL538_03045 PF00392 Bacterial regulatory proteins, gntR family AL538_03045 PF00155 Aminotransferase class I and II AL538_03060 PF01966 HD domain AL538_03060 PF00672 HAMP domain AL538_03065 PF00155 Aminotransferase class I and II AL538_03085 PF00672 HAMP domain AL538_03085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_03090 PF02028 BCCT, betaine/carnitine/choline family transporter AL538_03095 PF01047 MarR family AL538_03100 PF00072 Response regulator receiver domain AL538_03100 PF00196 Bacterial regulatory proteins, luxR family AL538_03105 PF17200 Single Cache domain 2 AL538_03105 PF07730 Histidine kinase AL538_03110 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL538_03120 PF03480 Bacterial extracellular solute-binding protein, family 7 AL538_03135 PF00753 Metallo-beta-lactamase superfamily AL538_03140 PF05951 Bacterial protein of unknown function (DUF882) AL538_03145 PF03734 L,D-transpeptidase catalytic domain AL538_03145 PF01471 Putative peptidoglycan binding domain AL538_03170 PF00925 GTP cyclohydrolase II AL538_03180 PF03918 Cytochrome C biogenesis protein AL538_03185 PF08534 Redoxin AL538_03190 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL538_03190 PF01578 Cytochrome C assembly protein AL538_03195 PF03916 Polysulphide reductase, NrfD AL538_03200 PF13247 4Fe-4S dicluster domain AL538_03210 PF02335 Cytochrome c552 AL538_03225 PF00521 DNA gyrase/topoisomerase IV, subunit A AL538_03225 PF03989 DNA gyrase C-terminal domain, beta-propeller AL538_03240 PF02867 Ribonucleotide reductase, barrel domain AL538_03240 PF00317 Ribonucleotide reductase, all-alpha domain AL538_03240 PF03477 ATP cone domain AL538_03245 PF00268 Ribonucleotide reductase, small chain AL538_03255 PF00994 Probable molybdopterin binding domain AL538_03270 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL538_03275 PF16653 Saccharopine dehydrogenase C-terminal domain AL538_03275 PF03435 Saccharopine dehydrogenase NADP binding domain AL538_03280 PF00202 Aminotransferase class-III AL538_03310 PF01066 CDP-alcohol phosphatidyltransferase AL538_03315 PF08459 UvrC Helix-hairpin-helix N-terminal AL538_03315 PF02151 UvrB/uvrC motif AL538_03315 PF01541 GIY-YIG catalytic domain AL538_03320 PF00072 Response regulator receiver domain AL538_03320 PF00196 Bacterial regulatory proteins, luxR family AL538_03325 PF03104 DNA polymerase family B, exonuclease domain AL538_03325 PF00136 DNA polymerase family B AL538_03335 PF01132 Elongation factor P (EF-P) OB domain AL538_03335 PF09285 Elongation factor P, C-terminal AL538_03335 PF08207 Elongation factor P (EF-P) KOW-like domain AL538_03340 PF04269 Protein of unknown function, DUF440 AL538_03345 PF01479 S4 domain AL538_03345 PF00849 RNA pseudouridylate synthase AL538_03355 PF01300 Telomere recombination AL538_03360 PF02811 PHP domain AL538_03365 PF08056 Tryptophan operon leader peptide AL538_03370 PF00425 chorismate binding enzyme AL538_03370 PF04715 Anthranilate synthase component I, N terminal region AL538_03375 PF00117 Glutamine amidotransferase class-I AL538_03380 PF02885 Glycosyl transferase family, helical bundle domain AL538_03380 PF00591 Glycosyl transferase family, a/b domain AL538_03385 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL538_03385 PF00218 Indole-3-glycerol phosphate synthase AL538_03390 PF00291 Pyridoxal-phosphate dependent enzyme AL538_03395 PF00290 Tryptophan synthase alpha chain AL538_03400 PF00375 Sodium:dicarboxylate symporter family AL538_03405 PF17327 Acyl homoserine lactone synthase AL538_03410 PF00072 Response regulator receiver domain AL538_03410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_03420 PF04279 Intracellular septation protein A AL538_03425 PF03061 Thioesterase superfamily AL538_03430 PF03795 YCII-related domain AL538_03440 PF08267 Cobalamin-independent synthase, N-terminal domain AL538_03440 PF01717 Cobalamin-independent synthase, Catalytic domain AL538_03445 PF03466 LysR substrate binding domain AL538_03445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_03460 PF00563 EAL domain AL538_03460 PF00498 FHA domain AL538_03460 PF00990 Diguanylate cyclase, GGDEF domain AL538_03465 PF08497 Radical SAM N-terminal AL538_03465 PF04055 Radical SAM superfamily AL538_03465 PF11842 Domain of unknown function (DUF3362) AL538_03470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL538_03470 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_03475 PF00375 Sodium:dicarboxylate symporter family AL538_03480 PF01042 Endoribonuclease L-PSP AL538_03485 PF08348 YheO-like PAS domain AL538_03485 PF13309 HTH domain AL538_03490 PF00672 HAMP domain AL538_03490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_03500 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AL538_03505 PF00535 Glycosyl transferase family 2 AL538_03510 PF00486 Transcriptional regulatory protein, C terminal AL538_03510 PF00072 Response regulator receiver domain AL538_03515 PF00672 HAMP domain AL538_03515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_03515 PF00512 His Kinase A (phospho-acceptor) domain AL538_03535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_03535 PF03466 LysR substrate binding domain AL538_03540 PF00529 HlyD membrane-fusion protein of T1SS AL538_03540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_03550 PF01047 MarR family AL538_03565 PF01717 Cobalamin-independent synthase, Catalytic domain AL538_03565 PF08267 Cobalamin-independent synthase, N-terminal domain AL538_03595 PF00005 ABC transporter AL538_03595 PF02687 FtsX-like permease family AL538_03595 PF12704 MacB-like periplasmic core domain AL538_03600 PF00005 ABC transporter AL538_03600 PF02687 FtsX-like permease family AL538_03600 PF12704 MacB-like periplasmic core domain AL538_03605 PF02687 FtsX-like permease family AL538_03605 PF12704 MacB-like periplasmic core domain AL538_03625 PF00440 Bacterial regulatory proteins, tetR family AL538_03630 PF00583 Acetyltransferase (GNAT) family AL538_03655 PF00085 Thioredoxin AL538_03660 PF02683 Cytochrome C biogenesis protein transmembrane region AL538_03660 PF11412 Disulphide bond corrector protein DsbC AL538_03670 PF03466 LysR substrate binding domain AL538_03670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_03675 PF04403 Paraquat-inducible protein A AL538_03680 PF02470 MlaD protein AL538_03685 PF03886 ABC-type transport auxiliary lipoprotein component AL538_03740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL538_03745 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL538_03750 PF18073 Rubredoxin metal binding domain AL538_03755 PF06305 Lipopolysaccharide assembly protein A domain AL538_03760 PF00216 Bacterial DNA-binding protein AL538_03765 PF00575 S1 RNA binding domain AL538_03770 PF02224 Cytidylate kinase AL538_03775 PF08496 Peptidase family S49 N-terminal AL538_03775 PF01343 Peptidase family S49 AL538_03780 PF00106 short chain dehydrogenase AL538_03790 PF00873 AcrB/AcrD/AcrF family AL538_03815 PF02811 PHP domain AL538_03815 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL538_03815 PF14579 Helix-hairpin-helix motif AL538_03815 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL538_03815 PF01336 OB-fold nucleic acid binding domain AL538_03820 PF00072 Response regulator receiver domain AL538_03820 PF01584 CheW-like domain AL538_03825 PF00480 ROK family AL538_03830 PF00224 Pyruvate kinase, barrel domain AL538_03830 PF02887 Pyruvate kinase, alpha/beta domain AL538_03835 PF01734 Patatin-like phospholipase AL538_03845 PF00209 Sodium:neurotransmitter symporter family AL538_03855 PF02378 Phosphotransferase system, EIIC AL538_03855 PF00367 phosphotransferase system, EIIB AL538_03860 PF01026 TatD related DNase AL538_03865 PF09115 DNA polymerase III, delta subunit, C terminal AL538_03870 PF02223 Thymidylate kinase AL538_03875 PF02618 YceG-like family AL538_03880 PF01063 Amino-transferase class IV AL538_03885 PF00109 Beta-ketoacyl synthase, N-terminal domain AL538_03885 PF02801 Beta-ketoacyl synthase, C-terminal domain AL538_03890 PF00550 Phosphopantetheine attachment site AL538_03900 PF00698 Acyl transferase domain AL538_03905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL538_03905 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL538_03910 PF02504 Fatty acid synthesis protein AL538_03915 PF01783 Ribosomal L32p protein family AL538_03920 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL538_03925 PF02545 Maf-like protein AL538_03930 PF01479 S4 domain AL538_03930 PF00849 RNA pseudouridylate synthase AL538_03935 PF10150 Ribonuclease E/G family AL538_03935 PF00575 S1 RNA binding domain AL538_03935 PF12111 Polyribonucleotide phosphorylase C terminal AL538_03945 PF01740 STAS domain AL538_03945 PF00916 Sulfate permease family AL538_03950 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL538_03955 PF12557 Cob(I)alamin adenosyltransferase N terminal AL538_03955 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AL538_03965 PF00485 Phosphoribulokinase / Uridine kinase family AL538_03970 PF10609 NUBPL iron-transfer P-loop NTPase AL538_03975 PF01588 Putative tRNA binding domain AL538_03975 PF09334 tRNA synthetases class I (M) AL538_03985 PF00392 Bacterial regulatory proteins, gntR family AL538_03985 PF07840 FadR C-terminal domain AL538_03990 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AL538_03995 PF02600 Disulfide bond formation protein DsbB AL538_04000 PF02810 SEC-C motif AL538_04000 PF07516 SecA Wing and Scaffold domain AL538_04000 PF07517 SecA DEAD-like domain AL538_04000 PF01043 SecA preprotein cross-linking domain AL538_04005 PF01207 Dihydrouridine synthase (Dus) AL538_04010 PF00990 Diguanylate cyclase, GGDEF domain AL538_04015 PF00128 Alpha amylase, catalytic domain AL538_04015 PF02903 Alpha amylase, N-terminal ig-like domain AL538_04020 PF00005 ABC transporter AL538_04025 PF02653 Branched-chain amino acid transport system / permease component AL538_04040 PF04217 Protein of unknown function, DUF412 AL538_04045 PF00871 Acetokinase family AL538_04050 PF01515 Phosphate acetyl/butaryl transferase AL538_04050 PF07085 DRTGG domain AL538_04055 PF13194 Domain of unknown function (DUF4010) AL538_04060 PF13409 Glutathione S-transferase, N-terminal domain AL538_04065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_04065 PF00005 ABC transporter AL538_04070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_04070 PF00005 ABC transporter AL538_04075 PF12911 N-terminal TM domain of oligopeptide transport permease C AL538_04075 PF00528 Binding-protein-dependent transport system inner membrane component AL538_04080 PF00528 Binding-protein-dependent transport system inner membrane component AL538_04085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL538_04090 PF02391 MoaE protein AL538_04095 PF02597 ThiS family AL538_04100 PF01967 MoaC family AL538_04105 PF00994 Probable molybdopterin binding domain AL538_04110 PF04055 Radical SAM superfamily AL538_04110 PF06463 Molybdenum Cofactor Synthesis C AL538_04115 PF01933 Uncharacterised protein family UPF0052 AL538_04120 PF01627 Hpt domain AL538_04125 PF02954 Bacterial regulatory protein, Fis family AL538_04125 PF00072 Response regulator receiver domain AL538_04125 PF00158 Sigma-54 interaction domain AL538_04130 PF04851 Type III restriction enzyme, res subunit AL538_04130 PF17757 UvrB interaction domain AL538_04130 PF12344 Ultra-violet resistance protein B AL538_04130 PF02151 UvrB/uvrC motif AL538_04130 PF00271 Helicase conserved C-terminal domain AL538_04140 PF02901 Pyruvate formate lyase-like AL538_04140 PF01228 Glycine radical AL538_04145 PF02508 Rnf-Nqr subunit, membrane protein AL538_04150 PF04060 Putative Fe-S cluster AL538_04155 PF12838 4Fe-4S dicluster domain AL538_04155 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AL538_04155 PF10531 SLBB domain AL538_04155 PF13375 RnfC Barrel sandwich hybrid domain AL538_04160 PF03116 NQR2, RnfD, RnfE family AL538_04165 PF04205 FMN-binding domain AL538_04170 PF02508 Rnf-Nqr subunit, membrane protein AL538_04175 PF00730 HhH-GPD superfamily base excision DNA repair protein AL538_04175 PF00633 Helix-hairpin-helix motif AL538_04175 PF10576 Iron-sulfur binding domain of endonuclease III AL538_04180 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL538_04185 PF10952 Protein of unknown function (DUF2753) AL538_04190 PF00691 OmpA family AL538_04190 PF18393 MotY N-terminal domain AL538_04195 PF00929 Exonuclease AL538_04200 PF03553 Na+/H+ antiporter family AL538_04200 PF13726 Na+-H+ antiporter family AL538_04235 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AL538_04255 PF04335 VirB8 protein AL538_04260 PF03524 Conjugal transfer protein AL538_04265 PF03743 Bacterial conjugation TrbI-like protein AL538_04270 PF00437 Type II/IV secretion system protein AL538_04275 PF02534 Type IV secretory system Conjugative DNA transfer AL538_04285 PF01131 DNA topoisomerase AL538_04285 PF01751 Toprim domain AL538_04290 PF04463 Protein of unknown function (DUF523) AL538_04310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_04310 PF03466 LysR substrate binding domain AL538_04320 PF00005 ABC transporter AL538_04325 PF00528 Binding-protein-dependent transport system inner membrane component AL538_04330 PF00528 Binding-protein-dependent transport system inner membrane component AL538_04335 PF12849 PBP superfamily domain AL538_04360 PF03466 LysR substrate binding domain AL538_04360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_04365 PF18821 Large polyvalent protein-associated domain 7 AL538_04365 PF03432 Relaxase/Mobilisation nuclease domain AL538_04415 PF00183 Hsp90 protein AL538_04430 PF00912 Transglycosylase AL538_04430 PF00905 Penicillin binding protein transpeptidase domain AL538_04430 PF14814 Bifunctional transglycosylase second domain AL538_04465 PF00691 OmpA family AL538_04465 PF01389 OmpA-like transmembrane domain AL538_04525 PF02899 Phage integrase, N-terminal SAM-like domain AL538_04525 PF00589 Phage integrase family AL538_04530 PF00462 Glutaredoxin AL538_04535 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL538_04535 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL538_04550 PF00171 Aldehyde dehydrogenase family AL538_04550 PF00465 Iron-containing alcohol dehydrogenase AL538_04555 PF01914 MarC family integral membrane protein AL538_04560 PF00520 Ion transport protein AL538_04560 PF00027 Cyclic nucleotide-binding domain AL538_04565 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL538_04565 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL538_04570 PF03553 Na+/H+ antiporter family AL538_04585 PF04245 37-kD nucleoid-associated bacterial protein AL538_04590 PF07208 Protein of unknown function (DUF1414) AL538_04595 PF11893 Domain of unknown function (DUF3413) AL538_04595 PF00884 Sulfatase AL538_04605 PF00850 Histone deacetylase domain AL538_04610 PF00106 short chain dehydrogenase AL538_04620 PF01131 DNA topoisomerase AL538_04620 PF01751 Toprim domain AL538_04625 PF00881 Nitroreductase family AL538_04630 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL538_04630 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_04635 PF01343 Peptidase family S49 AL538_04640 PF00710 Asparaginase, N-terminal AL538_04640 PF17763 Glutaminase/Asparaginase C-terminal domain AL538_04645 PF07023 Protein of unknown function (DUF1315) AL538_04655 PF01641 SelR domain AL538_04660 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL538_04660 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL538_04665 PF01263 Aldose 1-epimerase AL538_04670 PF01156 Inosine-uridine preferring nucleoside hydrolase AL538_04675 PF08447 PAS fold AL538_04675 PF13426 PAS domain AL538_04675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_04680 PF13847 Methyltransferase domain AL538_04695 PF02028 BCCT, betaine/carnitine/choline family transporter AL538_04700 PF00245 Alkaline phosphatase AL538_04710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL538_04715 PF03992 Antibiotic biosynthesis monooxygenase AL538_04720 PF05552 Conserved TM helix AL538_04720 PF00924 Mechanosensitive ion channel AL538_04725 PF04226 Transglycosylase associated protein AL538_04735 PF03692 Putative zinc- or iron-chelating domain AL538_04740 PF03692 Putative zinc- or iron-chelating domain AL538_04745 PF13309 HTH domain AL538_04745 PF08348 YheO-like PAS domain AL538_04750 PF03313 Serine dehydratase alpha chain AL538_04755 PF01042 Endoribonuclease L-PSP AL538_04765 PF00230 Major intrinsic protein AL538_04770 PF13662 Toprim domain AL538_04770 PF02132 RecR protein AL538_04775 PF02575 YbaB/EbfC DNA-binding family AL538_04780 PF12170 DNA polymerase III tau subunit V interacting with alpha AL538_04780 PF12169 DNA polymerase III subunits gamma and tau domain III AL538_04785 PF00156 Phosphoribosyl transferase domain AL538_04790 PF04304 Protein of unknown function (DUF454) AL538_04795 PF00072 Response regulator receiver domain AL538_04800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_04800 PF03466 LysR substrate binding domain AL538_04805 PF00156 Phosphoribosyl transferase domain AL538_04810 PF02674 Colicin V production protein AL538_04815 PF05036 Sporulation related domain AL538_04820 PF02875 Mur ligase family, glutamate ligase domain AL538_04820 PF08245 Mur ligase middle domain AL538_04825 PF17848 Acetyl-coA carboxylase zinc finger domain AL538_04825 PF01039 Carboxyl transferase domain AL538_04830 PF01416 tRNA pseudouridine synthase AL538_04840 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL538_04840 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL538_04845 PF11890 Domain of unknown function (DUF3410) AL538_04845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL538_04845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL538_04850 PF02801 Beta-ketoacyl synthase, C-terminal domain AL538_04850 PF00109 Beta-ketoacyl synthase, N-terminal domain AL538_04855 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL538_04855 PF01266 FAD dependent oxidoreductase AL538_04865 PF08891 YfcL protein AL538_04870 PF04315 Elongation factor P hydroxylase AL538_04875 PF03458 UPF0126 domain AL538_04880 PF01264 Chorismate synthase AL538_04885 PF05175 Methyltransferase small domain AL538_04890 PF01713 Smr domain AL538_04895 PF00300 Histidine phosphatase superfamily (branch 1) AL538_04900 PF00675 Insulinase (Peptidase family M16) AL538_04900 PF05193 Peptidase M16 inactive domain AL538_04900 PF16187 Middle or third domain of peptidase_M16 AL538_04905 PF00378 Enoyl-CoA hydratase/isomerase AL538_04905 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL538_04905 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL538_04910 PF00108 Thiolase, N-terminal domain AL538_04910 PF02803 Thiolase, C-terminal domain AL538_04915 PF04542 Sigma-70 region 2 AL538_04915 PF08281 Sigma-70, region 4 AL538_04925 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL538_04930 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL538_04935 PF04333 MlaA lipoprotein AL538_04940 PF03918 Cytochrome C biogenesis protein AL538_04945 PF03918 Cytochrome C biogenesis protein AL538_04950 PF08534 Redoxin AL538_04955 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL538_04955 PF01578 Cytochrome C assembly protein AL538_04960 PF03100 CcmE AL538_04970 PF01578 Cytochrome C assembly protein AL538_04975 PF03379 CcmB protein AL538_04980 PF00005 ABC transporter AL538_04990 PF01584 CheW-like domain AL538_05000 PF13614 AAA domain AL538_05005 PF01339 CheB methylesterase AL538_05005 PF00072 Response regulator receiver domain AL538_05010 PF02895 Signal transducing histidine kinase, homodimeric domain AL538_05010 PF07194 P2 response regulator binding domain AL538_05010 PF01584 CheW-like domain AL538_05010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_05010 PF01627 Hpt domain AL538_05015 PF04344 Chemotaxis phosphatase, CheZ AL538_05020 PF00072 Response regulator receiver domain AL538_05025 PF04539 Sigma-70 region 3 AL538_05025 PF04545 Sigma-70, region 4 AL538_05025 PF04542 Sigma-70 region 2 AL538_05030 PF10609 NUBPL iron-transfer P-loop NTPase AL538_05035 PF00448 SRP54-type protein, GTPase domain AL538_05040 PF00771 FHIPEP family AL538_05045 PF01312 FlhB HrpN YscU SpaS Family AL538_05050 PF01311 Bacterial export proteins, family 1 AL538_05055 PF01313 Bacterial export proteins, family 3 AL538_05060 PF00813 FliP family AL538_05065 PF04347 Flagellar biosynthesis protein, FliO AL538_05070 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL538_05075 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL538_05075 PF02154 Flagellar motor switch protein FliM AL538_05100 PF18269 T3SS EscN ATPase C-terminal domain AL538_05100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL538_05110 PF14842 FliG N-terminal domain AL538_05110 PF14841 FliG middle domain AL538_05110 PF01706 FliG C-terminal domain AL538_05115 PF01514 Secretory protein of YscJ/FliF family AL538_05115 PF08345 Flagellar M-ring protein C-terminal AL538_05120 PF02049 Flagellar hook-basal body complex protein FliE AL538_05125 PF00158 Sigma-54 interaction domain AL538_05125 PF00072 Response regulator receiver domain AL538_05125 PF02954 Bacterial regulatory protein, Fis family AL538_05130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_05130 PF00512 His Kinase A (phospho-acceptor) domain AL538_05135 PF00158 Sigma-54 interaction domain AL538_05135 PF00072 Response regulator receiver domain AL538_05135 PF02954 Bacterial regulatory protein, Fis family AL538_05140 PF02561 Flagellar protein FliS AL538_05150 PF07195 Flagellar hook-associated protein 2 C-terminus AL538_05150 PF02465 Flagellar hook-associated protein 2 N-terminus AL538_05150 PF07196 Flagellin hook IN motif AL538_05155 PF03646 FlaG protein AL538_05160 PF00700 Bacterial flagellin C-terminal helical region AL538_05160 PF07196 Flagellin hook IN motif AL538_05160 PF00669 Bacterial flagellin N-terminal helical region AL538_05165 PF07196 Flagellin hook IN motif AL538_05165 PF00669 Bacterial flagellin N-terminal helical region AL538_05165 PF00700 Bacterial flagellin C-terminal helical region AL538_05175 PF00669 Bacterial flagellin N-terminal helical region AL538_05175 PF07196 Flagellin hook IN motif AL538_05175 PF00700 Bacterial flagellin C-terminal helical region AL538_05185 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL538_05185 PF02056 Family 4 glycosyl hydrolase AL538_05190 PF12833 Helix-turn-helix domain AL538_05195 PF04261 Dyp-type peroxidase family AL538_05200 PF11143 Protein of unknown function (DUF2919) AL538_05220 PF03960 ArsC family AL538_05225 PF07687 Peptidase dimerisation domain AL538_05225 PF01546 Peptidase family M20/M25/M40 AL538_05245 PF00701 Dihydrodipicolinate synthetase family AL538_05250 PF01842 ACT domain AL538_05255 PF00578 AhpC/TSA family AL538_05260 PF01594 AI-2E family transporter AL538_05270 PF01435 Peptidase family M48 AL538_05270 PF13181 Tetratricopeptide repeat AL538_05275 PF03960 ArsC family AL538_05280 PF03358 NADPH-dependent FMN reductase AL538_05295 PF00860 Permease family AL538_05305 PF00586 AIR synthase related protein, N-terminal domain AL538_05305 PF02769 AIR synthase related protein, C-terminal domain AL538_05310 PF00551 Formyl transferase AL538_05315 PF13230 Glutamine amidotransferases class-II AL538_05320 PF13580 SIS domain AL538_05325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL538_05325 PF02770 Acyl-CoA dehydrogenase, middle domain AL538_05325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL538_05325 PF09317 Domain of unknown function (DUF1974) AL538_05345 PF00929 Exonuclease AL538_05350 PF00075 RNase H AL538_05355 PF08241 Methyltransferase domain AL538_05360 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL538_05365 PF01464 Transglycosylase SLT domain AL538_05365 PF01476 LysM domain AL538_05380 PF00543 Nitrogen regulatory protein P-II AL538_05385 PF00034 Cytochrome c AL538_05390 PF11734 TilS substrate C-terminal domain AL538_05390 PF09179 TilS substrate binding domain AL538_05390 PF01171 PP-loop family AL538_05395 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AL538_05400 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL538_05400 PF01336 OB-fold nucleic acid binding domain AL538_05400 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL538_05400 PF02811 PHP domain AL538_05400 PF14579 Helix-hairpin-helix motif AL538_05405 PF01351 Ribonuclease HII AL538_05410 PF02684 Lipid-A-disaccharide synthetase AL538_05415 PF00132 Bacterial transferase hexapeptide (six repeats) AL538_05415 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL538_05420 PF07977 FabA-like domain AL538_05425 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL538_05425 PF00132 Bacterial transferase hexapeptide (six repeats) AL538_05430 PF03938 Outer membrane protein (OmpH-like) AL538_05435 PF01103 Surface antigen AL538_05435 PF07244 Surface antigen variable number repeat AL538_05440 PF17820 PDZ domain AL538_05440 PF02163 Peptidase family M50 AL538_05445 PF13288 DXP reductoisomerase C-terminal domain AL538_05445 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL538_05445 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL538_05455 PF01255 Putative undecaprenyl diphosphate synthase AL538_05460 PF01765 Ribosome recycling factor AL538_05465 PF00696 Amino acid kinase family AL538_05470 PF00889 Elongation factor TS AL538_05475 PF00318 Ribosomal protein S2 AL538_05480 PF00557 Metallopeptidase family M24 AL538_05485 PF08335 GlnD PII-uridylyltransferase AL538_05485 PF01966 HD domain AL538_05485 PF01842 ACT domain AL538_05485 PF01909 Nucleotidyltransferase domain AL538_05490 PF11944 Protein of unknown function (DUF3461) AL538_05495 PF00849 RNA pseudouridylate synthase AL538_05500 PF04287 tRNA pseudouridine synthase C AL538_05530 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AL538_05540 PF01370 NAD dependent epimerase/dehydratase family AL538_05565 PF03806 AbgT putative transporter family AL538_05570 PF01197 Ribosomal protein L31 AL538_05575 PF18389 TrmO C-terminal domain AL538_05575 PF01980 tRNA-methyltransferase O AL538_05580 PF04073 Aminoacyl-tRNA editing domain AL538_05580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL538_05580 PF03129 Anticodon binding domain AL538_05590 PF06786 Uncharacterised protein family (UPF0253) AL538_05600 PF00209 Sodium:neurotransmitter symporter family AL538_05605 PF00704 Glycosyl hydrolases family 18 AL538_05605 PF00041 Fibronectin type III domain AL538_05615 PF03449 Transcription elongation factor, N-terminal AL538_05615 PF01272 Transcription elongation factor, GreA/GreB, C-term AL538_05620 PF00271 Helicase conserved C-terminal domain AL538_05620 PF00570 HRDC domain AL538_05620 PF09382 RQC domain AL538_05620 PF00270 DEAD/DEAH box helicase AL538_05620 PF16124 RecQ zinc-binding AL538_05625 PF00817 impB/mucB/samB family AL538_05625 PF11799 impB/mucB/samB family C-terminal domain AL538_05625 PF11798 IMS family HHH motif AL538_05630 PF00990 Diguanylate cyclase, GGDEF domain AL538_05630 PF00072 Response regulator receiver domain AL538_05640 PF02424 ApbE family AL538_05645 PF00970 Oxidoreductase FAD-binding domain AL538_05645 PF00111 2Fe-2S iron-sulfur cluster binding domain AL538_05645 PF00175 Oxidoreductase NAD-binding domain AL538_05650 PF02508 Rnf-Nqr subunit, membrane protein AL538_05655 PF02508 Rnf-Nqr subunit, membrane protein AL538_05660 PF04205 FMN-binding domain AL538_05665 PF03116 NQR2, RnfD, RnfE family AL538_05670 PF11973 NQRA C-terminal domain AL538_05670 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AL538_05675 PF01722 BolA-like protein AL538_05680 PF05175 Methyltransferase small domain AL538_05690 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL538_05695 PF07690 Major Facilitator Superfamily AL538_05705 PF04542 Sigma-70 region 2 AL538_05705 PF04545 Sigma-70, region 4 AL538_05720 PF03502 Nucleoside-specific channel-forming protein, Tsx AL538_05725 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL538_05725 PF02558 Ketopantoate reductase PanE/ApbA AL538_05730 PF01965 DJ-1/PfpI family AL538_05735 PF00266 Aminotransferase class-V AL538_05740 PF02657 Fe-S metabolism associated domain AL538_05745 PF00899 ThiF family AL538_05750 PF03562 MltA specific insert domain AL538_05750 PF06725 3D domain AL538_05760 PF00696 Amino acid kinase family AL538_05760 PF00583 Acetyltransferase (GNAT) family AL538_05770 PF13538 UvrD-like helicase C-terminal domain AL538_05775 PF12705 PD-(D/E)XK nuclease superfamily AL538_05775 PF13361 UvrD-like helicase C-terminal domain AL538_05775 PF00580 UvrD/REP helicase N-terminal domain AL538_05780 PF17946 RecC C-terminal domain AL538_05785 PF11893 Domain of unknown function (DUF3413) AL538_05785 PF00884 Sulfatase AL538_05795 PF03466 LysR substrate binding domain AL538_05795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_05800 PF07130 YebG protein AL538_05815 PF14602 Hexapeptide repeat of succinyl-transferase AL538_05815 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AL538_05820 PF03009 Glycerophosphoryl diester phosphodiesterase family AL538_05825 PF07690 Major Facilitator Superfamily AL538_05830 PF00230 Major intrinsic protein AL538_05835 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL538_05835 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL538_05840 PF08220 DeoR-like helix-turn-helix domain AL538_05840 PF00455 DeoR C terminal sensor domain AL538_05845 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL538_05845 PF01266 FAD dependent oxidoreductase AL538_05850 PF01464 Transglycosylase SLT domain AL538_05850 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL538_05870 PF01588 Putative tRNA binding domain AL538_05875 PF00356 Bacterial regulatory proteins, lacI family AL538_05880 PF01263 Aldose 1-epimerase AL538_05885 PF08544 GHMP kinases C terminal AL538_05885 PF00288 GHMP kinases N terminal domain AL538_05885 PF10509 Galactokinase galactose-binding signature AL538_05890 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AL538_05890 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AL538_05895 PF16363 GDP-mannose 4,6 dehydratase AL538_05900 PF00905 Penicillin binding protein transpeptidase domain AL538_05900 PF03717 Penicillin-binding Protein dimerisation domain AL538_05910 PF00356 Bacterial regulatory proteins, lacI family AL538_05915 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL538_05915 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL538_05915 PF00703 Glycosyl hydrolases family 2 AL538_05915 PF16353 Domain of unknown function(DUF4981) AL538_05915 PF02929 Beta galactosidase small chain AL538_05920 PF04074 YhcH/YjgK/YiaL AL538_05925 PF13520 Amino acid permease AL538_05930 PF03466 LysR substrate binding domain AL538_05930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_05975 PF00437 Type II/IV secretion system protein AL538_05990 PF00263 Bacterial type II and III secretion system protein AL538_05990 PF13629 Pilus formation protein N terminal region AL538_05990 PF04972 BON domain AL538_06015 PF12833 Helix-turn-helix domain AL538_06015 PF02805 Metal binding domain of Ada AL538_06020 PF00501 AMP-binding enzyme AL538_06030 PF03466 LysR substrate binding domain AL538_06030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_06035 PF03144 Elongation factor Tu domain 2 AL538_06035 PF00679 Elongation factor G C-terminus AL538_06035 PF00009 Elongation factor Tu GTP binding domain AL538_06035 PF03764 Elongation factor G, domain IV AL538_06035 PF14492 Elongation Factor G, domain II AL538_06040 PF18073 Rubredoxin metal binding domain AL538_06050 PF18429 Domain of unknown function (DUF5609) AL538_06060 PF01048 Phosphorylase superfamily AL538_06065 PF01676 Metalloenzyme superfamily AL538_06070 PF02885 Glycosyl transferase family, helical bundle domain AL538_06070 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AL538_06070 PF00591 Glycosyl transferase family, a/b domain AL538_06075 PF01791 DeoC/LacD family aldolase AL538_06080 PF01773 Na+ dependent nucleoside transporter N-terminus AL538_06080 PF07670 Nucleoside recognition AL538_06080 PF07662 Na+ dependent nucleoside transporter C-terminus AL538_06085 PF01026 TatD related DNase AL538_06090 PF16658 Class II release factor RF3, C-terminal domain AL538_06090 PF03144 Elongation factor Tu domain 2 AL538_06090 PF00009 Elongation factor Tu GTP binding domain AL538_06095 PF00990 Diguanylate cyclase, GGDEF domain AL538_06095 PF05230 MASE2 domain AL538_06115 PF13508 Acetyltransferase (GNAT) domain AL538_06125 PF00563 EAL domain AL538_06125 PF00990 Diguanylate cyclase, GGDEF domain AL538_06125 PF03707 Bacterial signalling protein N terminal repeat AL538_06140 PF01554 MatE AL538_06150 PF13181 Tetratricopeptide repeat AL538_06150 PF07719 Tetratricopeptide repeat AL538_06155 PF03725 3' exoribonuclease family, domain 2 AL538_06155 PF01138 3' exoribonuclease family, domain 1 AL538_06155 PF00575 S1 RNA binding domain AL538_06155 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL538_06155 PF00013 KH domain AL538_06160 PF00312 Ribosomal protein S15 AL538_06165 PF09157 Pseudouridine synthase II TruB, C-terminal AL538_06165 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL538_06165 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL538_06170 PF02033 Ribosome-binding factor A AL538_06175 PF00009 Elongation factor Tu GTP binding domain AL538_06175 PF11987 Translation-initiation factor 2 AL538_06175 PF08364 Bacterial translation initiation factor IF-2 associated region AL538_06175 PF04760 Translation initiation factor IF-2, N-terminal region AL538_06180 PF08529 NusA N-terminal domain AL538_06180 PF13184 NusA-like KH domain AL538_06180 PF00575 S1 RNA binding domain AL538_06185 PF02576 RimP N-terminal domain AL538_06185 PF17384 RimP C-terminal SH3 domain AL538_06200 PF03840 Preprotein translocase SecG subunit AL538_06205 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL538_06205 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL538_06205 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL538_06205 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL538_06210 PF00809 Pterin binding enzyme AL538_06215 PF00004 ATPase family associated with various cellular activities (AAA) AL538_06215 PF17862 AAA+ lid domain AL538_06215 PF01434 Peptidase family M41 AL538_06215 PF06480 FtsH Extracellular AL538_06220 PF01728 FtsJ-like methyltransferase AL538_06225 PF01985 CRS1 / YhbY (CRM) domain AL538_06230 PF01272 Transcription elongation factor, GreA/GreB, C-term AL538_06230 PF03449 Transcription elongation factor, N-terminal AL538_06235 PF13609 Gram-negative porin AL538_06240 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL538_06250 PF00579 tRNA synthetases class I (W and Y) AL538_06255 PF01551 Peptidase family M23 AL538_06255 PF01476 LysM domain AL538_06255 PF08525 Opacity-associated protein A N-terminal motif AL538_06260 PF00873 AcrB/AcrD/AcrF family AL538_06265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_06270 PF01521 Iron-sulphur cluster biosynthesis AL538_06275 PF00202 Aminotransferase class-III AL538_06280 PF01594 AI-2E family transporter AL538_06285 PF05175 Methyltransferase small domain AL538_06285 PF08468 Methyltransferase small domain N-terminal AL538_06295 PF00072 Response regulator receiver domain AL538_06295 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL538_06295 PF00512 His Kinase A (phospho-acceptor) domain AL538_06295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_06300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL538_06305 PF00528 Binding-protein-dependent transport system inner membrane component AL538_06310 PF12911 N-terminal TM domain of oligopeptide transport permease C AL538_06310 PF00528 Binding-protein-dependent transport system inner membrane component AL538_06315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_06315 PF00005 ABC transporter AL538_06320 PF00005 ABC transporter AL538_06320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_06330 PF01869 BadF/BadG/BcrA/BcrD ATPase family AL538_06335 PF02838 Glycosyl hydrolase family 20, domain 2 AL538_06335 PF00728 Glycosyl hydrolase family 20, catalytic domain AL538_06340 PF06165 Glycosyltransferase family 36 AL538_06340 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL538_06345 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL538_06345 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL538_06345 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL538_06345 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL538_06350 PF00005 ABC transporter AL538_06350 PF08402 TOBE domain AL538_06360 PF13416 Bacterial extracellular solute-binding protein AL538_06365 PF00909 Ammonium Transporter Family AL538_06370 PF00543 Nitrogen regulatory protein P-II AL538_06375 PF06062 Uncharacterised protein family (UPF0231) AL538_06380 PF11791 Aconitate B N-terminal domain AL538_06380 PF00330 Aconitase family (aconitate hydratase) AL538_06380 PF06434 Aconitate hydratase 2 N-terminus AL538_06385 PF01734 Patatin-like phospholipase AL538_06390 PF00912 Transglycosylase AL538_06390 PF00905 Penicillin binding protein transpeptidase domain AL538_06390 PF14814 Bifunctional transglycosylase second domain AL538_06395 PF00271 Helicase conserved C-terminal domain AL538_06395 PF08482 ATP-dependent helicase C-terminal AL538_06395 PF00270 DEAD/DEAH box helicase AL538_06395 PF04408 Helicase associated domain (HA2) AL538_06400 PF03749 Sugar fermentation stimulation protein RE domain AL538_06400 PF17746 SfsA N-terminal OB domain AL538_06405 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL538_06410 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL538_06415 PF12626 Polymerase A arginine-rich C-terminus AL538_06415 PF12627 Probable RNA and SrmB- binding site of polymerase A AL538_06415 PF01743 Poly A polymerase head domain AL538_06420 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL538_06425 PF02548 Ketopantoate hydroxymethyltransferase AL538_06430 PF02569 Pantoate-beta-alanine ligase AL538_06435 PF03279 Bacterial lipid A biosynthesis acyltransferase AL538_06440 PF01061 ABC-2 type transporter AL538_06445 PF00005 ABC transporter AL538_06450 PF01740 STAS domain AL538_06450 PF00916 Sulfate permease family AL538_06455 PF00484 Carbonic anhydrase AL538_06460 PF00156 Phosphoribosyl transferase domain AL538_06465 PF00440 Bacterial regulatory proteins, tetR family AL538_06470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL538_06470 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_06475 PF02817 e3 binding domain AL538_06475 PF00364 Biotin-requiring enzyme AL538_06475 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL538_06480 PF17831 Pyruvate dehydrogenase E1 component middle domain AL538_06480 PF00456 Transketolase, thiamine diphosphate binding domain AL538_06485 PF07729 FCD domain AL538_06485 PF00392 Bacterial regulatory proteins, gntR family AL538_06490 PF01510 N-acetylmuramoyl-L-alanine amidase AL538_06495 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL538_06495 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL538_06505 PF00114 Pilin (bacterial filament) AL538_06505 PF07963 Prokaryotic N-terminal methylation motif AL538_06510 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL538_06510 PF00437 Type II/IV secretion system protein AL538_06515 PF00482 Type II secretion system (T2SS), protein F AL538_06520 PF01478 Type IV leader peptidase family AL538_06520 PF06750 Bacterial Peptidase A24 N-terminal domain AL538_06525 PF01121 Dephospho-CoA kinase AL538_06530 PF07072 Cell division protein AL538_06535 PF03884 DNA gyrase inhibitor YacG AL538_06540 PF01245 Ribosomal protein L19 AL538_06545 PF01746 tRNA (Guanine-1)-methyltransferase AL538_06550 PF01782 RimM N-terminal domain AL538_06550 PF05239 PRC-barrel domain AL538_06555 PF00886 Ribosomal protein S16 AL538_06560 PF02881 SRP54-type protein, helical bundle domain AL538_06560 PF00448 SRP54-type protein, GTPase domain AL538_06560 PF02978 Signal peptide binding domain AL538_06565 PF01578 Cytochrome C assembly protein AL538_06570 PF03471 Transporter associated domain AL538_06570 PF01595 Cyclin M transmembrane N-terminal domain AL538_06570 PF00571 CBS domain AL538_06575 PF02664 S-Ribosylhomocysteinase (LuxS) AL538_06585 PF04262 Glutamate-cysteine ligase AL538_06590 PF00675 Insulinase (Peptidase family M16) AL538_06590 PF05193 Peptidase M16 inactive domain AL538_06595 PF09335 SNARE associated Golgi protein AL538_06605 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL538_06610 PF02436 Conserved carboxylase domain AL538_06610 PF00682 HMGL-like AL538_06610 PF00364 Biotin-requiring enzyme AL538_06615 PF04277 Oxaloacetate decarboxylase, gamma chain AL538_06670 PF02599 Global regulator protein family AL538_06675 PF13840 ACT domain AL538_06675 PF01842 ACT domain AL538_06675 PF00696 Amino acid kinase family AL538_06680 PF02272 DHHA1 domain AL538_06680 PF01411 tRNA synthetases class II (A) AL538_06680 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL538_06685 PF02631 RecX family AL538_06690 PF00154 recA bacterial DNA recombination protein AL538_06695 PF02464 Competence-damaged protein AL538_06700 PF05192 MutS domain III AL538_06700 PF00488 MutS domain V AL538_06700 PF01624 MutS domain I AL538_06700 PF05190 MutS family domain IV AL538_06700 PF05188 MutS domain II AL538_06705 PF00140 Sigma-70 factor, region 1.2 AL538_06705 PF04542 Sigma-70 region 2 AL538_06705 PF04539 Sigma-70 region 3 AL538_06705 PF04545 Sigma-70, region 4 AL538_06710 PF01476 LysM domain AL538_06710 PF01551 Peptidase family M23 AL538_06720 PF01975 Survival protein SurE AL538_06725 PF01142 tRNA pseudouridine synthase D (TruD) AL538_06730 PF02542 YgbB family AL538_06735 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL538_06740 PF04977 Septum formation initiator AL538_06745 PF00113 Enolase, C-terminal TIM barrel domain AL538_06745 PF03952 Enolase, N-terminal domain AL538_06750 PF00117 Glutamine amidotransferase class-I AL538_06750 PF06418 CTP synthase N-terminus AL538_06755 PF03819 MazG nucleotide pyrophosphohydrolase domain AL538_06760 PF04607 Region found in RelA / SpoT proteins AL538_06760 PF02824 TGS domain AL538_06760 PF13291 ACT domain AL538_06765 PF05958 tRNA (Uracil-5-)-methyltransferase AL538_06765 PF01938 TRAM domain AL538_06770 PF00072 Response regulator receiver domain AL538_06770 PF00512 His Kinase A (phospho-acceptor) domain AL538_06770 PF00672 HAMP domain AL538_06770 PF01627 Hpt domain AL538_06770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_06770 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL538_06775 PF01648 4'-phosphopantetheinyl transferase superfamily AL538_06780 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL538_06785 PF02565 Recombination protein O C terminal AL538_06785 PF11967 Recombination protein O N terminal AL538_06790 PF07650 KH domain AL538_06790 PF01926 50S ribosome-binding GTPase AL538_06795 PF14622 Ribonuclease-III-like AL538_06795 PF00035 Double-stranded RNA binding motif AL538_06800 PF10502 Signal peptidase, peptidase S26 AL538_06805 PF06421 GTP-binding protein LepA C-terminus AL538_06805 PF03144 Elongation factor Tu domain 2 AL538_06805 PF00679 Elongation factor G C-terminus AL538_06805 PF00009 Elongation factor Tu GTP binding domain AL538_06815 PF17188 MucB/RseB C-terminal domain AL538_06815 PF03888 MucB/RseB N-terminal domain AL538_06820 PF03872 Anti sigma-E protein RseA, N-terminal domain AL538_06820 PF03873 Anti sigma-E protein RseA, C-terminal domain AL538_06825 PF08281 Sigma-70, region 4 AL538_06825 PF04542 Sigma-70 region 2 AL538_06830 PF00890 FAD binding domain AL538_06830 PF02910 Fumarate reductase flavoprotein C-term AL538_06840 PF03937 Flavinator of succinate dehydrogenase AL538_06860 PF01494 FAD binding domain AL538_06865 PF01494 FAD binding domain AL538_06870 PF03695 Uncharacterised protein family (UPF0149) AL538_06875 PF05164 Cell division protein ZapA AL538_06885 PF01812 5-formyltetrahydrofolate cyclo-ligase family AL538_06890 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL538_06895 PF01842 ACT domain AL538_06895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL538_06895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL538_06900 PF04402 Protein of unknown function (DUF541) AL538_06905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_06905 PF03466 LysR substrate binding domain AL538_06910 PF01810 LysE type translocator AL538_06920 PF00924 Mechanosensitive ion channel AL538_06920 PF05552 Conserved TM helix AL538_06925 PF01116 Fructose-bisphosphate aldolase class-II AL538_06930 PF00162 Phosphoglycerate kinase AL538_06935 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL538_06935 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL538_06945 PF00456 Transketolase, thiamine diphosphate binding domain AL538_06945 PF02779 Transketolase, pyrimidine binding domain AL538_06945 PF02780 Transketolase, C-terminal domain AL538_06950 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL538_06950 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL538_06950 PF02772 S-adenosylmethionine synthetase, central domain AL538_06960 PF10263 SprT-like family AL538_06960 PF17283 SprT-like zinc ribbon domain AL538_06965 PF04231 Endonuclease I AL538_06970 PF04452 RNA methyltransferase AL538_06975 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL538_06975 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL538_06980 PF02622 Uncharacterized ACR, COG1678 AL538_06985 PF03652 Holliday junction resolvase AL538_06990 PF00437 Type II/IV secretion system protein AL538_06995 PF00437 Type II/IV secretion system protein AL538_07000 PF01168 Alanine racemase, N-terminal domain AL538_07005 PF03807 NADP oxidoreductase coenzyme F420-dependent AL538_07005 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL538_07010 PF02325 YGGT family AL538_07015 PF02594 Uncharacterised ACR, YggU family COG1872 AL538_07025 PF01725 Ham1 family AL538_07030 PF04055 Radical SAM superfamily AL538_07030 PF06969 HemN C-terminal domain AL538_07035 PF04960 Glutaminase AL538_07040 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL538_07045 PF02390 Putative methyltransferase AL538_07050 PF00730 HhH-GPD superfamily base excision DNA repair protein AL538_07050 PF14815 NUDIX domain AL538_07050 PF00633 Helix-hairpin-helix motif AL538_07055 PF04362 Bacterial Fe(2+) trafficking AL538_07060 PF01464 Transglycosylase SLT domain AL538_07060 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL538_07100 PF00672 HAMP domain AL538_07100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_07100 PF17200 Single Cache domain 2 AL538_07130 PF00171 Aldehyde dehydrogenase family AL538_07175 PF00072 Response regulator receiver domain AL538_07180 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL538_07180 PF00356 Bacterial regulatory proteins, lacI family AL538_07185 PF04794 YdjC-like protein AL538_07190 PF02056 Family 4 glycosyl hydrolase AL538_07190 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL538_07195 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AL538_07200 PF02378 Phosphotransferase system, EIIC AL538_07205 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL538_07225 PF00106 short chain dehydrogenase AL538_07235 PF03739 Lipopolysaccharide export system permease LptF/LptG AL538_07240 PF03739 Lipopolysaccharide export system permease LptF/LptG AL538_07245 PF00883 Cytosol aminopeptidase family, catalytic domain AL538_07245 PF02789 Cytosol aminopeptidase family, N-terminal domain AL538_07250 PF04364 DNA polymerase III chi subunit, HolC AL538_07255 PF10458 Valyl tRNA synthetase tRNA binding arm AL538_07255 PF00133 tRNA synthetases class I (I, L, M and V) AL538_07255 PF08264 Anticodon-binding domain of tRNA AL538_07275 PF06877 Regulator of ribonuclease activity B AL538_07285 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL538_07285 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL538_07290 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL538_07290 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL538_07295 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL538_07295 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL538_07300 PF01042 Endoribonuclease L-PSP AL538_07305 PF01553 Acyltransferase AL538_07310 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL538_07315 PF01722 BolA-like protein AL538_07325 PF05494 MlaC protein AL538_07330 PF02470 MlaD protein AL538_07335 PF02405 Permease MlaE AL538_07340 PF00005 ABC transporter AL538_07345 PF01699 Sodium/calcium exchanger protein AL538_07350 PF00571 CBS domain AL538_07350 PF01380 SIS domain AL538_07360 PF03968 OstA-like protein AL538_07365 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL538_07365 PF00005 ABC transporter AL538_07370 PF04552 Sigma-54, DNA binding domain AL538_07370 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL538_07370 PF04963 Sigma-54 factor, core binding domain AL538_07375 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL538_07380 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL538_07385 PF03668 P-loop ATPase protein family AL538_07390 PF00381 PTS HPr component phosphorylation site AL538_07395 PF01769 Divalent cation transporter AL538_07395 PF00571 CBS domain AL538_07395 PF03448 MgtE intracellular N domain AL538_07400 PF01523 Putative modulator of DNA gyrase AL538_07405 PF04751 Protein of unknown function (DUF615) AL538_07410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL538_07410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL538_07415 PF00849 RNA pseudouridylate synthase AL538_07425 PF12137 RNA polymerase recycling family C-terminal AL538_07425 PF00176 SNF2 family N-terminal domain AL538_07425 PF00271 Helicase conserved C-terminal domain AL538_07425 PF18339 RapA N-terminal Tudor like domain 1 AL538_07425 PF18337 RapA N-terminal Tudor like domain AL538_07430 PF02562 PhoH-like protein AL538_07430 PF13638 PIN domain AL538_07435 PF01523 Putative modulator of DNA gyrase AL538_07440 PF00795 Carbon-nitrogen hydrolase AL538_07445 PF13116 Protein of unknown function AL538_07445 PF13502 AsmA-like C-terminal region AL538_07450 PF10150 Ribonuclease E/G family AL538_07450 PF00575 S1 RNA binding domain AL538_07455 PF02545 Maf-like protein AL538_07460 PF04093 rod shape-determining protein MreD AL538_07465 PF04085 rod shape-determining protein MreC AL538_07505 PF07963 Prokaryotic N-terminal methylation motif AL538_07505 PF08334 Type II secretion system (T2SS), protein G AL538_07515 PF00482 Type II secretion system (T2SS), protein F AL538_07520 PF00437 Type II/IV secretion system protein AL538_07520 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL538_07530 PF01471 Putative peptidoglycan binding domain AL538_07530 PF13401 AAA domain AL538_07535 PF03958 Bacterial type II/III secretion system short domain AL538_07535 PF00263 Bacterial type II and III secretion system protein AL538_07555 PF17157 Gammaproteobacterial periplasmic sensor domain AL538_07555 PF00563 EAL domain AL538_07555 PF00990 Diguanylate cyclase, GGDEF domain AL538_07560 PF00436 Single-strand binding protein family AL538_07565 PF00196 Bacterial regulatory proteins, luxR family AL538_07570 PF00483 Nucleotidyl transferase AL538_07575 PF17760 UvrA interaction domain AL538_07575 PF17755 UvrA DNA-binding domain AL538_07575 PF00005 ABC transporter AL538_07585 PF00266 Aminotransferase class-V AL538_07590 PF00696 Amino acid kinase family AL538_07590 PF01842 ACT domain AL538_07595 PF00809 Pterin binding enzyme AL538_07595 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL538_07595 PF02607 B12 binding domain AL538_07595 PF02310 B12 binding domain AL538_07595 PF02574 Homocysteine S-methyltransferase AL538_07600 PF00999 Sodium/hydrogen exchanger family AL538_07650 PF01507 Phosphoadenosine phosphosulfate reductase family AL538_07655 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL538_07655 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL538_07660 PF00175 Oxidoreductase NAD-binding domain AL538_07660 PF00258 Flavodoxin AL538_07660 PF00667 FAD binding domain AL538_07680 PF01207 Dihydrouridine synthase (Dus) AL538_07685 PF01475 Ferric uptake regulator family AL538_07695 PF00342 Phosphoglucose isomerase AL538_07700 PF01894 Uncharacterised protein family UPF0047 AL538_07710 PF01168 Alanine racemase, N-terminal domain AL538_07710 PF00842 Alanine racemase, C-terminal domain AL538_07715 PF03796 DnaB-like helicase C terminal domain AL538_07715 PF00772 DnaB-like helicase N terminal domain AL538_07725 PF01281 Ribosomal protein L9, N-terminal domain AL538_07725 PF03948 Ribosomal protein L9, C-terminal domain AL538_07730 PF01084 Ribosomal protein S18 AL538_07735 PF01250 Ribosomal protein S6 AL538_07740 PF00834 Ribulose-phosphate 3 epimerase family AL538_07745 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL538_07755 PF01761 3-dehydroquinate synthase AL538_07760 PF01202 Shikimate kinase AL538_07765 PF07660 Secretin and TonB N terminus short domain AL538_07765 PF03958 Bacterial type II/III secretion system short domain AL538_07765 PF11741 AMIN domain AL538_07765 PF00263 Bacterial type II and III secretion system protein AL538_07790 PF00905 Penicillin binding protein transpeptidase domain AL538_07790 PF00912 Transglycosylase AL538_07790 PF17092 Penicillin-binding protein OB-like domain AL538_07795 PF03466 LysR substrate binding domain AL538_07795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_07800 PF00462 Glutaredoxin AL538_07800 PF08534 Redoxin AL538_07805 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_07805 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL538_07815 PF00583 Acetyltransferase (GNAT) family AL538_07815 PF00206 Lyase AL538_07815 PF14698 Argininosuccinate lyase C-terminal AL538_07820 PF00764 Arginosuccinate synthase AL538_07825 PF00696 Amino acid kinase family AL538_07830 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL538_07830 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL538_07835 PF01546 Peptidase family M20/M25/M40 AL538_07835 PF07687 Peptidase dimerisation domain AL538_07840 PF00311 Phosphoenolpyruvate carboxylase AL538_07850 PF02219 Methylenetetrahydrofolate reductase AL538_07855 PF00742 Homoserine dehydrogenase AL538_07855 PF03447 Homoserine dehydrogenase, NAD binding domain AL538_07855 PF00696 Amino acid kinase family AL538_07860 PF01053 Cys/Met metabolism PLP-dependent enzyme AL538_07865 PF01340 Met Apo-repressor, MetJ AL538_07870 PF00390 Malic enzyme, N-terminal domain AL538_07870 PF03949 Malic enzyme, NAD binding domain AL538_07875 PF00210 Ferritin-like domain AL538_07880 PF04324 BFD-like [2Fe-2S] binding domain AL538_07885 PF00009 Elongation factor Tu GTP binding domain AL538_07885 PF03144 Elongation factor Tu domain 2 AL538_07885 PF03143 Elongation factor Tu C-terminal domain AL538_07890 PF03144 Elongation factor Tu domain 2 AL538_07890 PF00679 Elongation factor G C-terminus AL538_07890 PF00009 Elongation factor Tu GTP binding domain AL538_07890 PF14492 Elongation Factor G, domain II AL538_07890 PF03764 Elongation factor G, domain IV AL538_07895 PF00177 Ribosomal protein S7p/S5e AL538_07900 PF00164 Ribosomal protein S12/S23 AL538_07905 PF04077 DsrH like protein AL538_07910 PF02635 DsrE/DsrF-like family AL538_07915 PF02635 DsrE/DsrF-like family AL538_07920 PF08348 YheO-like PAS domain AL538_07920 PF13309 HTH domain AL538_07925 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL538_07925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL538_07935 PF04102 SlyX AL538_07940 PF01112 Asparaginase AL538_07945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL538_07955 PF02254 TrkA-N domain AL538_07955 PF00999 Sodium/hydrogen exchanger family AL538_07960 PF02525 Flavodoxin-like fold AL538_07965 PF00005 ABC transporter AL538_07965 PF12848 ABC transporter AL538_07975 PF00561 alpha/beta hydrolase fold AL538_07980 PF06794 Uncharacterised protein family (UPF0270) AL538_07985 PF00485 Phosphoribulokinase / Uridine kinase family AL538_07990 PF00027 Cyclic nucleotide-binding domain AL538_07990 PF13545 Crp-like helix-turn-helix domain AL538_08000 PF00171 Aldehyde dehydrogenase family AL538_08005 PF04958 Arginine N-succinyltransferase beta subunit AL538_08010 PF00202 Aminotransferase class-III AL538_08015 PF00117 Glutamine amidotransferase class-I AL538_08025 PF00267 Gram-negative porin AL538_08035 PF00579 tRNA synthetases class I (W and Y) AL538_08040 PF13419 Haloacid dehalogenase-like hydrolase AL538_08045 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL538_08045 PF00588 SpoU rRNA Methylase family AL538_08050 PF08461 Ribonuclease R winged-helix domain AL538_08050 PF08206 Ribonuclease B OB domain AL538_08050 PF00773 RNB domain AL538_08050 PF00575 S1 RNA binding domain AL538_08050 PF17876 Cold shock domain AL538_08055 PF02082 Transcriptional regulator AL538_08060 PF00970 Oxidoreductase FAD-binding domain AL538_08060 PF00175 Oxidoreductase NAD-binding domain AL538_08060 PF00042 Globin AL538_08065 PF08238 Sel1 repeat AL538_08070 PF00709 Adenylosuccinate synthetase AL538_08075 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AL538_08080 PF01145 SPFH domain / Band 7 family AL538_08085 PF01145 SPFH domain / Band 7 family AL538_08085 PF12221 Bacterial membrane protein N terminal AL538_08090 PF01926 50S ribosome-binding GTPase AL538_08090 PF16360 GTP-binding GTPase Middle Region AL538_08090 PF13167 GTP-binding GTPase N-terminal AL538_08095 PF17209 Hfq protein AL538_08105 PF01119 DNA mismatch repair protein, C-terminal domain AL538_08105 PF08676 MutL C terminal dimerisation domain AL538_08110 PF01520 N-acetylmuramoyl-L-alanine amidase AL538_08115 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL538_08120 PF08331 Domain of unknown function (DUF1730) AL538_08185 PF00929 Exonuclease AL538_08190 PF03193 RsgA GTPase AL538_08195 PF02666 Phosphatidylserine decarboxylase AL538_08200 PF00939 Sodium:sulfate symporter transmembrane region AL538_08205 PF00672 HAMP domain AL538_08205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_08215 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AL538_08215 PF01676 Metalloenzyme superfamily AL538_08220 PF00581 Rhodanese-like domain AL538_08225 PF02556 Preprotein translocase subunit SecB AL538_08230 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL538_08230 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL538_08235 PF00132 Bacterial transferase hexapeptide (six repeats) AL538_08235 PF06426 Serine acetyltransferase, N-terminal AL538_08240 PF01551 Peptidase family M23 AL538_08250 PF08360 QacR-like protein, C-terminal region AL538_08250 PF00440 Bacterial regulatory proteins, tetR family AL538_08260 PF00152 tRNA synthetases class II (D, K and N) AL538_08265 PF02910 Fumarate reductase flavoprotein C-term AL538_08265 PF00890 FAD binding domain AL538_08270 PF13183 4Fe-4S dicluster domain AL538_08270 PF13085 2Fe-2S iron-sulfur cluster binding domain AL538_08275 PF02300 Fumarate reductase subunit C AL538_08280 PF02313 Fumarate reductase subunit D AL538_08295 PF08207 Elongation factor P (EF-P) KOW-like domain AL538_08295 PF09285 Elongation factor P, C-terminal AL538_08295 PF01132 Elongation factor P (EF-P) OB domain AL538_08300 PF04055 Radical SAM superfamily AL538_08305 PF02308 MgtC family AL538_08330 PF02796 Helix-turn-helix domain of resolvase AL538_08330 PF00239 Resolvase, N terminal domain AL538_08340 PF00118 TCP-1/cpn60 chaperonin family AL538_08345 PF00166 Chaperonin 10 Kd subunit AL538_08350 PF01554 MatE AL538_08355 PF00365 Phosphofructokinase AL538_08360 PF01545 Cation efflux family AL538_08360 PF16916 Dimerisation domain of Zinc Transporter AL538_08365 PF07813 LTXXQ motif family protein AL538_08370 PF00072 Response regulator receiver domain AL538_08370 PF00486 Transcriptional regulatory protein, C terminal AL538_08375 PF00672 HAMP domain AL538_08375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_08375 PF00512 His Kinase A (phospho-acceptor) domain AL538_08375 PF16527 Two-component sensor protein CpxA, periplasmic domain AL538_08380 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL538_08380 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL538_08385 PF00588 SpoU rRNA Methylase family AL538_08390 PF04186 FxsA cytoplasmic membrane protein AL538_08395 PF10415 Fumarase C C-terminus AL538_08395 PF00206 Lyase AL538_08400 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL538_08405 PF02683 Cytochrome C biogenesis protein transmembrane region AL538_08405 PF11412 Disulphide bond corrector protein DsbC AL538_08410 PF00072 Response regulator receiver domain AL538_08410 PF00196 Bacterial regulatory proteins, luxR family AL538_08415 PF01914 MarC family integral membrane protein AL538_08425 PF00474 Sodium:solute symporter family AL538_08440 PF00206 Lyase AL538_08440 PF10415 Fumarase C C-terminus AL538_08445 PF00672 HAMP domain AL538_08445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_08445 PF01627 Hpt domain AL538_08445 PF00072 Response regulator receiver domain AL538_08445 PF00512 His Kinase A (phospho-acceptor) domain AL538_08450 PF12832 MFS_1 like family AL538_08465 PF13193 AMP-binding enzyme C-terminal domain AL538_08465 PF16177 Acetyl-coenzyme A synthetase N-terminus AL538_08465 PF00501 AMP-binding enzyme AL538_08470 PF01220 Dehydroquinase class II AL538_08475 PF00364 Biotin-requiring enzyme AL538_08480 PF02785 Biotin carboxylase C-terminal domain AL538_08480 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL538_08480 PF00289 Biotin carboxylase, N-terminal domain AL538_08490 PF01207 Dihydrouridine synthase (Dus) AL538_08495 PF02954 Bacterial regulatory protein, Fis family AL538_08500 PF00563 EAL domain AL538_08500 PF00990 Diguanylate cyclase, GGDEF domain AL538_08500 PF13188 PAS domain AL538_08500 PF03707 Bacterial signalling protein N terminal repeat AL538_08550 PF08240 Alcohol dehydrogenase GroES-like domain AL538_08550 PF00107 Zinc-binding dehydrogenase AL538_08555 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL538_08555 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL538_08555 PF01276 Orn/Lys/Arg decarboxylase, major domain AL538_08560 PF13520 Amino acid permease AL538_08570 PF00486 Transcriptional regulatory protein, C terminal AL538_08570 PF18500 CadC C-terminal domain 1 AL538_08575 PF13411 MerR HTH family regulatory protein AL538_08585 PF01808 AICARFT/IMPCHase bienzyme AL538_08585 PF02142 MGS-like domain AL538_08590 PF02844 Phosphoribosylglycinamide synthetase, N domain AL538_08590 PF02843 Phosphoribosylglycinamide synthetase, C domain AL538_08590 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL538_08600 PF00216 Bacterial DNA-binding protein AL538_08605 PF00571 CBS domain AL538_08605 PF01595 Cyclin M transmembrane N-terminal domain AL538_08610 PF04222 Protein of unknown function (DUF416) AL538_08615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL538_08620 PF03167 Uracil DNA glycosylase superfamily AL538_08625 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL538_08640 PF09297 NADH pyrophosphatase zinc ribbon domain AL538_08640 PF00293 NUDIX domain AL538_08645 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AL538_08650 PF00623 RNA polymerase Rpb1, domain 2 AL538_08650 PF04983 RNA polymerase Rpb1, domain 3 AL538_08650 PF05000 RNA polymerase Rpb1, domain 4 AL538_08650 PF04998 RNA polymerase Rpb1, domain 5 AL538_08650 PF04997 RNA polymerase Rpb1, domain 1 AL538_08655 PF04563 RNA polymerase beta subunit AL538_08655 PF04561 RNA polymerase Rpb2, domain 2 AL538_08655 PF10385 RNA polymerase beta subunit external 1 domain AL538_08655 PF00562 RNA polymerase Rpb2, domain 6 AL538_08655 PF04560 RNA polymerase Rpb2, domain 7 AL538_08655 PF04565 RNA polymerase Rpb2, domain 3 AL538_08660 PF00542 Ribosomal protein L7/L12 C-terminal domain AL538_08660 PF16320 Ribosomal protein L7/L12 dimerisation domain AL538_08665 PF00466 Ribosomal protein L10 AL538_08670 PF00687 Ribosomal protein L1p/L10e family AL538_08675 PF00298 Ribosomal protein L11, RNA binding domain AL538_08675 PF03946 Ribosomal protein L11, N-terminal domain AL538_08680 PF00467 KOW motif AL538_08680 PF02357 Transcription termination factor nusG AL538_08685 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL538_08690 PF00009 Elongation factor Tu GTP binding domain AL538_08690 PF03143 Elongation factor Tu C-terminal domain AL538_08690 PF03144 Elongation factor Tu domain 2 AL538_08715 PF00485 Phosphoribulokinase / Uridine kinase family AL538_08720 PF02237 Biotin protein ligase C terminal domain AL538_08720 PF03099 Biotin/lipoate A/B protein ligase family AL538_08720 PF08279 HTH domain AL538_08725 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL538_08725 PF01565 FAD binding domain AL538_08735 PF13091 PLD-like domain AL538_08810 PF01177 Asp/Glu/Hydantoin racemase AL538_08820 PF00593 TonB dependent receptor AL538_08820 PF07715 TonB-dependent Receptor Plug Domain AL538_08825 PF05958 tRNA (Uracil-5-)-methyltransferase AL538_08880 PF06803 Protein of unknown function (DUF1232) AL538_08895 PF04002 RadC-like JAB domain AL538_08900 PF00145 C-5 cytosine-specific DNA methylase AL538_08900 PF12728 Helix-turn-helix domain AL538_08915 PF00589 Phage integrase family AL538_08915 PF13356 Arm DNA-binding domain AL538_08925 PF00440 Bacterial regulatory proteins, tetR family AL538_08930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL538_08930 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_08935 PF01554 MatE AL538_08945 PF00717 Peptidase S24-like AL538_08945 PF01726 LexA DNA binding domain AL538_08950 PF01553 Acyltransferase AL538_08955 PF01040 UbiA prenyltransferase family AL538_08960 PF04345 Chorismate lyase AL538_08965 PF03748 Flagellar basal body-associated protein FliL AL538_08970 PF01694 Rhomboid family AL538_08970 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL538_08975 PF00581 Rhodanese-like domain AL538_08980 PF04542 Sigma-70 region 2 AL538_08980 PF04545 Sigma-70, region 4 AL538_08980 PF00140 Sigma-70 factor, region 1.2 AL538_08985 PF18075 FtsX extracellular domain AL538_08990 PF00005 ABC transporter AL538_08995 PF02881 SRP54-type protein, helical bundle domain AL538_08995 PF00448 SRP54-type protein, GTPase domain AL538_09010 PF01914 MarC family integral membrane protein AL538_09030 PF10694 Protein of unknown function (DUF2500) AL538_09055 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL538_09055 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL538_09060 PF01022 Bacterial regulatory protein, arsR family AL538_09065 PF00563 EAL domain AL538_09065 PF08668 HDOD domain AL538_09070 PF01810 LysE type translocator AL538_09075 PF12146 Serine aminopeptidase, S33 AL538_09100 PF00990 Diguanylate cyclase, GGDEF domain AL538_09100 PF00563 EAL domain AL538_09100 PF08495 FIST N domain AL538_09100 PF10442 FIST C domain AL538_09105 PF13419 Haloacid dehalogenase-like hydrolase AL538_09110 PF02899 Phage integrase, N-terminal SAM-like domain AL538_09110 PF00589 Phage integrase family AL538_09120 PF01678 Diaminopimelate epimerase AL538_09125 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL538_09125 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL538_09135 PF01491 Frataxin-like domain AL538_09140 PF12633 Adenylate cyclase NT domain AL538_09140 PF01295 Adenylate cyclase, class-I AL538_09145 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL538_09145 PF03900 Porphobilinogen deaminase, C-terminal domain AL538_09150 PF02602 Uroporphyrinogen-III synthase HemD AL538_09155 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AL538_09160 PF07219 HemY protein N-terminus AL538_09195 PF00175 Oxidoreductase NAD-binding domain AL538_09200 PF00111 2Fe-2S iron-sulfur cluster binding domain AL538_09205 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL538_09215 PF07498 Rho termination factor, N-terminal domain AL538_09215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL538_09215 PF07497 Rho termination factor, RNA-binding domain AL538_09220 PF00085 Thioredoxin AL538_09225 PF00271 Helicase conserved C-terminal domain AL538_09225 PF00270 DEAD/DEAH box helicase AL538_09230 PF02541 Ppx/GppA phosphatase family AL538_09235 PF02592 Putative vitamin uptake transporter AL538_09245 PF09382 RQC domain AL538_09245 PF16124 RecQ zinc-binding AL538_09245 PF00570 HRDC domain AL538_09245 PF00271 Helicase conserved C-terminal domain AL538_09245 PF00270 DEAD/DEAH box helicase AL538_09250 PF00892 EamA-like transporter family AL538_09260 PF01810 LysE type translocator AL538_09275 PF13361 UvrD-like helicase C-terminal domain AL538_09275 PF00580 UvrD/REP helicase N-terminal domain AL538_09285 PF05114 Protein of unknown function (DUF692) AL538_09305 PF07690 Major Facilitator Superfamily AL538_09310 PF03466 LysR substrate binding domain AL538_09310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_09315 PF00557 Metallopeptidase family M24 AL538_09315 PF01321 Creatinase/Prolidase N-terminal domain AL538_09315 PF00557 Metallopeptidase family M24 AL538_09315 PF01321 Creatinase/Prolidase N-terminal domain AL538_09320 PF04055 Radical SAM superfamily AL538_09320 PF06968 Biotin and Thiamin Synthesis associated domain AL538_09325 PF05690 Thiazole biosynthesis protein ThiG AL538_09330 PF02597 ThiS family AL538_09335 PF00899 ThiF family AL538_09340 PF02581 Thiamine monophosphate synthase AL538_09345 PF13667 ThiC-associated domain AL538_09345 PF01964 Radical SAM ThiC family AL538_09350 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL538_09355 PF00394 Multicopper oxidase AL538_09355 PF07732 Multicopper oxidase AL538_09355 PF07731 Multicopper oxidase AL538_09400 PF00132 Bacterial transferase hexapeptide (six repeats) AL538_09410 PF01488 Shikimate / quinate 5-dehydrogenase AL538_09410 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL538_09410 PF08501 Shikimate dehydrogenase substrate binding domain AL538_09415 PF01218 Coproporphyrinogen III oxidase AL538_09420 PF01300 Telomere recombination AL538_09425 PF00731 AIR carboxylase AL538_09430 PF02222 ATP-grasp domain AL538_09430 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL538_09435 PF01396 Topoisomerase DNA binding C4 zinc finger AL538_09440 PF04361 Protein of unknown function (DUF494) AL538_09445 PF02481 DNA recombination-mediator protein A AL538_09445 PF17782 DprA winged helix domain AL538_09455 PF01327 Polypeptide deformylase AL538_09460 PF02911 Formyl transferase, C-terminal domain AL538_09460 PF00551 Formyl transferase AL538_09465 PF01189 16S rRNA methyltransferase RsmB/F AL538_09465 PF01029 NusB family AL538_09470 PF02254 TrkA-N domain AL538_09470 PF02080 TrkA-C domain AL538_09475 PF02386 Cation transport protein AL538_09485 PF03006 Haemolysin-III related AL538_09490 PF07070 SpoOM protein AL538_09495 PF06288 Protein of unknown function (DUF1040) AL538_09500 PF13746 4Fe-4S dicluster domain AL538_09500 PF12801 4Fe-4S binding domain AL538_09500 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL538_09505 PF01636 Phosphotransferase enzyme family AL538_09510 PF01323 DSBA-like thioredoxin domain AL538_09515 PF01553 Acyltransferase AL538_09525 PF00990 Diguanylate cyclase, GGDEF domain AL538_09525 PF08448 PAS fold AL538_09530 PF01078 Magnesium chelatase, subunit ChlI AL538_09530 PF13335 Magnesium chelatase, subunit ChlI C-terminal AL538_09535 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL538_09535 PF00205 Thiamine pyrophosphate enzyme, central domain AL538_09535 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL538_09545 PF01063 Amino-transferase class IV AL538_09550 PF00920 Dehydratase family AL538_09555 PF00585 C-terminal regulatory domain of Threonine dehydratase AL538_09555 PF00291 Pyridoxal-phosphate dependent enzyme AL538_09560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_09560 PF03466 LysR substrate binding domain AL538_09565 PF07690 Major Facilitator Superfamily AL538_09570 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL538_09575 PF00528 Binding-protein-dependent transport system inner membrane component AL538_09580 PF00132 Bacterial transferase hexapeptide (six repeats) AL538_09580 PF12804 MobA-like NTP transferase domain AL538_09585 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL538_09585 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL538_09590 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL538_09590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL538_09595 PF00231 ATP synthase AL538_09600 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL538_09600 PF00306 ATP synthase alpha/beta chain, C terminal domain AL538_09600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL538_09605 PF00213 ATP synthase delta (OSCP) subunit AL538_09610 PF00430 ATP synthase B/B' CF(0) AL538_09615 PF00137 ATP synthase subunit C AL538_09620 PF00119 ATP synthase A chain AL538_09625 PF03899 ATP synthase I chain AL538_09630 PF17762 HTH domain found in ParB protein AL538_09630 PF02195 ParB-like nuclease domain AL538_09635 PF13614 AAA domain AL538_09640 PF02527 rRNA small subunit methyltransferase G AL538_09645 PF01134 Glucose inhibited division protein A AL538_09645 PF13932 GidA associated domain AL538_09650 PF00258 Flavodoxin AL538_09655 PF10396 GTP-binding protein TrmE N-terminus AL538_09655 PF12631 MnmE helical domain AL538_09655 PF01926 50S ribosome-binding GTPase AL538_09660 PF14849 YidC periplasmic domain AL538_09660 PF02096 60Kd inner membrane protein AL538_09665 PF00825 Ribonuclease P AL538_09670 PF00468 Ribosomal protein L34 AL538_09675 PF00005 ABC transporter AL538_09680 PF00528 Binding-protein-dependent transport system inner membrane component AL538_09685 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL538_09690 PF08299 Bacterial dnaA protein helix-turn-helix AL538_09690 PF11638 DnaA N-terminal domain AL538_09690 PF00308 Bacterial dnaA protein AL538_09695 PF02768 DNA polymerase III beta subunit, C-terminal domain AL538_09695 PF02767 DNA polymerase III beta subunit, central domain AL538_09695 PF00712 DNA polymerase III beta subunit, N-terminal domain AL538_09700 PF02463 RecF/RecN/SMC N terminal domain AL538_09705 PF00986 DNA gyrase B subunit, carboxyl terminus AL538_09705 PF00204 DNA gyrase B AL538_09705 PF18053 DNA gyrase B subunit insert domain AL538_09705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_09705 PF01751 Toprim domain AL538_09710 PF00011 Hsp20/alpha crystallin family AL538_09715 PF00155 Aminotransferase class I and II AL538_09720 PF00128 Alpha amylase, catalytic domain AL538_09725 PF02092 Glycyl-tRNA synthetase beta subunit AL538_09725 PF05746 DALR anticodon binding domain AL538_09730 PF02091 Glycyl-tRNA synthetase alpha subunit AL538_09735 PF01169 Uncharacterized protein family UPF0016 AL538_09745 PF01206 Sulfurtransferase TusA AL538_09755 PF03466 LysR substrate binding domain AL538_09755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_09760 PF08240 Alcohol dehydrogenase GroES-like domain AL538_09760 PF00107 Zinc-binding dehydrogenase AL538_09765 PF00108 Thiolase, N-terminal domain AL538_09765 PF02803 Thiolase, C-terminal domain AL538_09770 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL538_09770 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL538_09770 PF00378 Enoyl-CoA hydratase/isomerase AL538_09775 PF09186 Domain of unknown function (DUF1949) AL538_09775 PF01205 Uncharacterized protein family UPF0029 AL538_09780 PF02386 Cation transport protein AL538_09785 PF12724 Flavodoxin domain AL538_09825 PF03466 LysR substrate binding domain AL538_09825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_09830 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL538_09830 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL538_09835 PF04380 Membrane fusogenic activity AL538_09840 PF00873 AcrB/AcrD/AcrF family AL538_09845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_09850 PF00440 Bacterial regulatory proteins, tetR family AL538_09850 PF08359 YsiA-like protein, C-terminal region AL538_09855 PF00580 UvrD/REP helicase N-terminal domain AL538_09855 PF13361 UvrD-like helicase C-terminal domain AL538_09860 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL538_09900 PF00005 ABC transporter AL538_09900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_09905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL538_09915 PF00528 Binding-protein-dependent transport system inner membrane component AL538_09915 PF12911 N-terminal TM domain of oligopeptide transport permease C AL538_09945 PF00069 Protein kinase domain AL538_09950 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL538_09950 PF00356 Bacterial regulatory proteins, lacI family AL538_09955 PF03466 LysR substrate binding domain AL538_09955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_09960 PF00893 Small Multidrug Resistance protein AL538_09965 PF00893 Small Multidrug Resistance protein AL538_09975 PF00920 Dehydratase family AL538_09980 PF01202 Shikimate kinase AL538_09985 PF02447 GntP family permease AL538_09990 PF01081 KDPG and KHG aldolase AL538_09995 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_09995 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL538_10010 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL538_10020 PF01432 Peptidase family M3 AL538_10025 PF01037 Lrp/AsnC ligand binding domain AL538_10030 PF00563 EAL domain AL538_10030 PF00990 Diguanylate cyclase, GGDEF domain AL538_10030 PF08448 PAS fold AL538_10035 PF04445 Putative SAM-dependent methyltransferase AL538_10045 PF00892 EamA-like transporter family AL538_10050 PF00582 Universal stress protein family AL538_10060 PF00210 Ferritin-like domain AL538_10065 PF10625 Universal stress protein B (UspB) AL538_10075 PF00990 Diguanylate cyclase, GGDEF domain AL538_10075 PF00563 EAL domain AL538_10075 PF03707 Bacterial signalling protein N terminal repeat AL538_10085 PF02646 RmuC family AL538_10090 PF01209 ubiE/COQ5 methyltransferase family AL538_10095 PF02036 SCP-2 sterol transfer family AL538_10100 PF03109 ABC1 family AL538_10105 PF02416 mttA/Hcf106 family AL538_10110 PF02416 mttA/Hcf106 family AL538_10115 PF00902 Sec-independent protein translocase protein (TatC) AL538_10120 PF01026 TatD related DNase AL538_10125 PF00490 Delta-aminolevulinic acid dehydratase AL538_10135 PF01367 5'-3' exonuclease, C-terminal SAM fold AL538_10135 PF01612 3'-5' exonuclease AL538_10135 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL538_10135 PF00476 DNA polymerase family A AL538_10140 PF01926 50S ribosome-binding GTPase AL538_10145 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL538_10155 PF04220 Der GTPase activator (YihI) AL538_10165 PF06969 HemN C-terminal domain AL538_10165 PF04055 Radical SAM superfamily AL538_10170 PF00962 Adenosine/AMP deaminase AL538_10175 PF03707 Bacterial signalling protein N terminal repeat AL538_10175 PF00563 EAL domain AL538_10175 PF00990 Diguanylate cyclase, GGDEF domain AL538_10180 PF02954 Bacterial regulatory protein, Fis family AL538_10180 PF00158 Sigma-54 interaction domain AL538_10180 PF00072 Response regulator receiver domain AL538_10185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_10185 PF00512 His Kinase A (phospho-acceptor) domain AL538_10185 PF00989 PAS fold AL538_10195 PF00120 Glutamine synthetase, catalytic domain AL538_10195 PF03951 Glutamine synthetase, beta-Grasp domain AL538_10215 PF03631 Virulence factor BrkB AL538_10220 PF02580 D-Tyr-tRNA(Tyr) deacylase AL538_10225 PF09500 Putative thioesterase (yiiD_Cterm) AL538_10225 PF00583 Acetyltransferase (GNAT) family AL538_10235 PF01293 Phosphoenolpyruvate carboxykinase AL538_10240 PF01430 Hsp33 protein AL538_10245 PF01479 S4 domain AL538_10250 PF11356 Type II secretion system protein C AL538_10255 PF00263 Bacterial type II and III secretion system protein AL538_10255 PF03958 Bacterial type II/III secretion system short domain AL538_10260 PF00437 Type II/IV secretion system protein AL538_10265 PF00482 Type II secretion system (T2SS), protein F AL538_10270 PF07963 Prokaryotic N-terminal methylation motif AL538_10270 PF08334 Type II secretion system (T2SS), protein G AL538_10275 PF12019 Type II transport protein GspH AL538_10280 PF02501 Type II secretion system (T2SS), protein I AL538_10280 PF07963 Prokaryotic N-terminal methylation motif AL538_10285 PF11612 Type II secretion system (T2SS), protein J AL538_10285 PF07963 Prokaryotic N-terminal methylation motif AL538_10290 PF03934 Type II secretion system (T2SS), protein K AL538_10295 PF05134 Type II secretion system (T2SS), protein L AL538_10295 PF12693 GspL periplasmic domain AL538_10300 PF04612 Type II secretion system (T2SS), protein M AL538_10305 PF01203 Type II secretion system (T2SS), protein N AL538_10310 PF00459 Inositol monophosphatase family AL538_10315 PF00293 NUDIX domain AL538_10320 PF01106 NifU-like domain AL538_10320 PF01521 Iron-sulphur cluster biosynthesis AL538_10325 PF00156 Phosphoribosyl transferase domain AL538_10330 PF00561 alpha/beta hydrolase fold AL538_10340 PF16921 Tex protein YqgF-like domain AL538_10340 PF09371 Tex-like protein N-terminal domain AL538_10340 PF17674 HHH domain AL538_10340 PF00575 S1 RNA binding domain AL538_10350 PF01272 Transcription elongation factor, GreA/GreB, C-term AL538_10350 PF03449 Transcription elongation factor, N-terminal AL538_10355 PF00486 Transcriptional regulatory protein, C terminal AL538_10355 PF00072 Response regulator receiver domain AL538_10360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_10360 PF00512 His Kinase A (phospho-acceptor) domain AL538_10360 PF00672 HAMP domain AL538_10365 PF00860 Permease family AL538_10370 PF00326 Prolyl oligopeptidase family AL538_10375 PF00271 Helicase conserved C-terminal domain AL538_10375 PF00270 DEAD/DEAH box helicase AL538_10375 PF17191 RecG wedge domain AL538_10380 PF00588 SpoU rRNA Methylase family AL538_10380 PF12105 SpoU, rRNA methylase, C-terminal AL538_10385 PF13291 ACT domain AL538_10385 PF04607 Region found in RelA / SpoT proteins AL538_10385 PF02824 TGS domain AL538_10390 PF01192 RNA polymerase Rpb6 AL538_10395 PF00625 Guanylate kinase AL538_10410 PF02472 Biopolymer transport protein ExbD/TolR AL538_10415 PF01618 MotA/TolQ/ExbB proton channel family AL538_10430 PF07715 TonB-dependent Receptor Plug Domain AL538_10430 PF00593 TonB dependent receptor AL538_10435 PF00528 Binding-protein-dependent transport system inner membrane component AL538_10440 PF00528 Binding-protein-dependent transport system inner membrane component AL538_10440 PF12911 N-terminal TM domain of oligopeptide transport permease C AL538_10445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL538_10450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_10450 PF00005 ABC transporter AL538_10455 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_10455 PF00005 ABC transporter AL538_10470 PF00892 EamA-like transporter family AL538_10480 PF00072 Response regulator receiver domain AL538_10480 PF00486 Transcriptional regulatory protein, C terminal AL538_10485 PF03755 YicC-like family, N-terminal region AL538_10485 PF08340 Domain of unknown function (DUF1732) AL538_10490 PF01138 3' exoribonuclease family, domain 1 AL538_10490 PF03725 3' exoribonuclease family, domain 2 AL538_10500 PF03279 Bacterial lipid A biosynthesis acyltransferase AL538_10505 PF00440 Bacterial regulatory proteins, tetR family AL538_10510 PF02441 Flavoprotein AL538_10510 PF04127 DNA / pantothenate metabolism flavoprotein AL538_10515 PF00672 HAMP domain AL538_10515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_10515 PF17200 Single Cache domain 2 AL538_10520 PF04002 RadC-like JAB domain AL538_10525 PF00830 Ribosomal L28 family AL538_10530 PF00471 Ribosomal protein L33 AL538_10535 PF00884 Sulfatase AL538_10545 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL538_10545 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL538_10545 PF06827 Zinc finger found in FPG and IleRS AL538_10550 PF01467 Cytidylyltransferase-like AL538_10555 PF05686 Glycosyl transferase family 90 AL538_10560 PF00535 Glycosyl transferase family 2 AL538_10565 PF00535 Glycosyl transferase family 2 AL538_10570 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL538_10575 PF01219 Prokaryotic diacylglycerol kinase AL538_10585 PF16363 GDP-mannose 4,6 dehydratase AL538_10590 PF00483 Nucleotidyl transferase AL538_10595 PF05523 WxcM-like, C-terminal AL538_10605 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AL538_10620 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL538_10625 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL538_10635 PF03279 Bacterial lipid A biosynthesis acyltransferase AL538_10640 PF01370 NAD dependent epimerase/dehydratase family AL538_10645 PF06082 Exopolysaccharide biosynthesis protein YbjH AL538_10685 PF12804 MobA-like NTP transferase domain AL538_10695 PF04991 LicD family AL538_10705 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AL538_10710 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AL538_10720 PF00535 Glycosyl transferase family 2 AL538_10725 PF00535 Glycosyl transferase family 2 AL538_10730 PF02397 Bacterial sugar transferase AL538_10735 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL538_10735 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL538_10735 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL538_10740 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AL538_10740 PF10996 Beta-Casp domain AL538_10740 PF00753 Metallo-beta-lactamase superfamily AL538_10745 PF00121 Triosephosphate isomerase AL538_10765 PF08220 DeoR-like helix-turn-helix domain AL538_10765 PF00455 DeoR C terminal sensor domain AL538_10770 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AL538_10775 PF06005 Cell division protein ZapB AL538_10780 PF03737 Aldolase/RraA AL538_10785 PF01040 UbiA prenyltransferase family AL538_10790 PF07724 AAA domain (Cdc48 subfamily) AL538_10790 PF00004 ATPase family associated with various cellular activities (AAA) AL538_10795 PF00227 Proteasome subunit AL538_10805 PF00356 Bacterial regulatory proteins, lacI family AL538_10810 PF18074 Primosomal protein N C-terminal domain AL538_10810 PF00271 Helicase conserved C-terminal domain AL538_10810 PF00270 DEAD/DEAH box helicase AL538_10810 PF17764 3′ DNA-binding domain (3′BD) AL538_10810 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL538_10815 PF01197 Ribosomal protein L31 AL538_10820 PF00338 Ribosomal protein S10p/S20e AL538_10825 PF00297 Ribosomal protein L3 AL538_10830 PF00573 Ribosomal protein L4/L1 family AL538_10835 PF00276 Ribosomal protein L23 AL538_10840 PF03947 Ribosomal Proteins L2, C-terminal domain AL538_10840 PF00181 Ribosomal Proteins L2, RNA binding domain AL538_10845 PF00203 Ribosomal protein S19 AL538_10850 PF00237 Ribosomal protein L22p/L17e AL538_10855 PF07650 KH domain AL538_10855 PF00189 Ribosomal protein S3, C-terminal domain AL538_10860 PF00252 Ribosomal protein L16p/L10e AL538_10865 PF00831 Ribosomal L29 protein AL538_10870 PF00366 Ribosomal protein S17 AL538_10875 PF00238 Ribosomal protein L14p/L23e AL538_10880 PF00467 KOW motif AL538_10880 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL538_10885 PF00281 Ribosomal protein L5 AL538_10885 PF00673 ribosomal L5P family C-terminus AL538_10890 PF00253 Ribosomal protein S14p/S29e AL538_10895 PF00410 Ribosomal protein S8 AL538_10900 PF00347 Ribosomal protein L6 AL538_10905 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL538_10910 PF00333 Ribosomal protein S5, N-terminal domain AL538_10910 PF03719 Ribosomal protein S5, C-terminal domain AL538_10915 PF00327 Ribosomal protein L30p/L7e AL538_10920 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AL538_10925 PF00344 SecY translocase AL538_10930 PF00444 Ribosomal protein L36 AL538_10935 PF00416 Ribosomal protein S13/S18 AL538_10940 PF00411 Ribosomal protein S11 AL538_10945 PF00163 Ribosomal protein S4/S9 N-terminal domain AL538_10945 PF01479 S4 domain AL538_10950 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL538_10950 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL538_10950 PF01000 RNA polymerase Rpb3/RpoA insert domain AL538_10955 PF01196 Ribosomal protein L17 AL538_10965 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL538_10965 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL538_10980 PF13673 Acetyltransferase (GNAT) domain AL538_10985 PF03880 DbpA RNA binding domain AL538_10985 PF00271 Helicase conserved C-terminal domain AL538_10985 PF00270 DEAD/DEAH box helicase AL538_10995 PF00149 Calcineurin-like phosphoesterase AL538_10995 PF02872 5'-nucleotidase, C-terminal domain AL538_11000 PF10414 Sirohaem synthase dimerisation region AL538_11000 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL538_11000 PF14824 Sirohaem biosynthesis protein central AL538_11005 PF01507 Phosphoadenosine phosphosulfate reductase family AL538_11010 PF00009 Elongation factor Tu GTP binding domain AL538_11015 PF02080 TrkA-C domain AL538_11015 PF03600 Citrate transporter AL538_11040 PF00005 ABC transporter AL538_11050 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL538_11060 PF01625 Peptide methionine sulfoxide reductase AL538_11065 PF01103 Surface antigen AL538_11065 PF07244 Surface antigen variable number repeat AL538_11065 PF17243 POTRA domain TamA domain 1 AL538_11070 PF04357 TamB, inner membrane protein subunit of TAM complex AL538_11075 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AL538_11085 PF00719 Inorganic pyrophosphatase AL538_11090 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL538_11095 PF08245 Mur ligase middle domain AL538_11095 PF02875 Mur ligase family, glutamate ligase domain AL538_11095 PF01225 Mur ligase family, catalytic domain AL538_11100 PF02441 Flavoprotein AL538_11110 PF00528 Binding-protein-dependent transport system inner membrane component AL538_11115 PF00005 ABC transporter AL538_11135 PF01316 Arginine repressor, DNA binding domain AL538_11135 PF02863 Arginine repressor, C-terminal domain AL538_11140 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL538_11140 PF00056 lactate/malate dehydrogenase, NAD binding domain AL538_11150 PF00348 Polyprenyl synthetase AL538_11155 PF00829 Ribosomal prokaryotic L21 protein AL538_11160 PF01016 Ribosomal L27 protein AL538_11165 PF01926 50S ribosome-binding GTPase AL538_11165 PF01018 GTP1/OBG AL538_11170 PF06738 Putative threonine/serine exporter AL538_11175 PF12821 Threonine/Serine exporter, ThrE AL538_11180 PF00186 Dihydrofolate reductase AL538_11185 PF00149 Calcineurin-like phosphoesterase AL538_11190 PF04379 ApaG domain AL538_11195 PF00398 Ribosomal RNA adenine dimethylase AL538_11200 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL538_11205 PF09312 SurA N-terminal domain AL538_11210 PF04453 LPS transport system D AL538_11210 PF03968 OstA-like protein AL538_11215 PF05099 Tellurite resistance protein TerB AL538_11215 PF00226 DnaJ domain AL538_11225 PF00694 Aconitase C-terminal domain AL538_11230 PF00330 Aconitase family (aconitate hydratase) AL538_11235 PF00180 Isocitrate/isopropylmalate dehydrogenase AL538_11240 PF00682 HMGL-like AL538_11240 PF08502 LeuA allosteric (dimerisation) domain AL538_11250 PF01569 PAP2 superfamily AL538_11260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_11260 PF03466 LysR substrate binding domain AL538_11265 PF00501 AMP-binding enzyme AL538_11270 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL538_11270 PF00205 Thiamine pyrophosphate enzyme, central domain AL538_11270 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL538_11275 PF10369 Small subunit of acetolactate synthase AL538_11280 PF17158 Membrane-associated sensor, integral membrane domain AL538_11280 PF00990 Diguanylate cyclase, GGDEF domain AL538_11290 PF02887 Pyruvate kinase, alpha/beta domain AL538_11290 PF00224 Pyruvate kinase, barrel domain AL538_11295 PF08220 DeoR-like helix-turn-helix domain AL538_11295 PF00455 DeoR C terminal sensor domain AL538_11300 PF01380 SIS domain AL538_11315 PF00486 Transcriptional regulatory protein, C terminal AL538_11315 PF00072 Response regulator receiver domain AL538_11320 PF00512 His Kinase A (phospho-acceptor) domain AL538_11320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_11320 PF00672 HAMP domain AL538_11325 PF13419 Haloacid dehalogenase-like hydrolase AL538_11330 PF05068 Mannitol repressor AL538_11335 PF08125 Mannitol dehydrogenase C-terminal domain AL538_11335 PF01232 Mannitol dehydrogenase Rossmann domain AL538_11340 PF02378 Phosphotransferase system, EIIC AL538_11340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL538_11340 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL538_11370 PF04539 Sigma-70 region 3 AL538_11370 PF04546 Sigma-70, non-essential region AL538_11370 PF04542 Sigma-70 region 2 AL538_11370 PF04545 Sigma-70, region 4 AL538_11370 PF03979 Sigma-70 factor, region 1.1 AL538_11370 PF00140 Sigma-70 factor, region 1.2 AL538_11375 PF08278 DNA primase DnaG DnaB-binding AL538_11375 PF10410 DnaB-helicase binding domain of primase AL538_11375 PF01807 CHC2 zinc finger AL538_11375 PF08275 DNA primase catalytic core, N-terminal domain AL538_11380 PF09424 Yqey-like protein AL538_11385 PF01165 Ribosomal protein S21 AL538_11390 PF00814 Glycoprotease family AL538_11395 PF00561 alpha/beta hydrolase fold AL538_11400 PF02660 Glycerol-3-phosphate acyltransferase AL538_11405 PF02152 Dihydroneopterin aldolase AL538_11410 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL538_11415 PF02673 Bacitracin resistance protein BacA AL538_11420 PF01743 Poly A polymerase head domain AL538_11420 PF01966 HD domain AL538_11420 PF12627 Probable RNA and SrmB- binding site of polymerase A AL538_11425 PF01471 Putative peptidoglycan binding domain AL538_11425 PF13401 AAA domain AL538_11435 PF08239 Bacterial SH3 domain AL538_11440 PF01384 Phosphate transporter family AL538_11445 PF01865 Protein of unknown function DUF47 AL538_11450 PF01928 CYTH domain AL538_11455 PF07885 Ion channel AL538_11460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_11460 PF00672 HAMP domain AL538_11460 PF02743 Cache domain AL538_11465 PF03710 Glutamate-ammonia ligase adenylyltransferase AL538_11465 PF08335 GlnD PII-uridylyltransferase AL538_11470 PF01467 Cytidylyltransferase-like AL538_11470 PF00294 pfkB family carbohydrate kinase AL538_11475 PF02321 Outer membrane efflux protein AL538_11480 PF00293 NUDIX domain AL538_11485 PF06853 Protein of unknown function (DUF1249) AL538_11490 PF00149 Calcineurin-like phosphoesterase AL538_11495 PF05728 Uncharacterised protein family (UPF0227) AL538_11500 PF01751 Toprim domain AL538_11500 PF00986 DNA gyrase B subunit, carboxyl terminus AL538_11500 PF00204 DNA gyrase B AL538_11500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_11505 PF03989 DNA gyrase C-terminal domain, beta-propeller AL538_11505 PF00521 DNA gyrase/topoisomerase IV, subunit A AL538_11510 PF13180 PDZ domain AL538_11515 PF00595 PDZ domain AL538_11525 PF06295 Protein of unknown function (DUF1043) AL538_11530 PF03969 AFG1-like ATPase AL538_11535 PF00572 Ribosomal protein L13 AL538_11540 PF00380 Ribosomal protein S9/S16 AL538_11545 PF00355 Rieske [2Fe-2S] domain AL538_11545 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL538_11550 PF00032 Cytochrome b(C-terminal)/b6/petD AL538_11550 PF00033 Cytochrome b/b6/petB AL538_11555 PF02167 Cytochrome C1 family AL538_11560 PF02798 Glutathione S-transferase, N-terminal domain AL538_11560 PF00043 Glutathione S-transferase, C-terminal domain AL538_11565 PF04386 Stringent starvation protein B AL538_11570 PF04972 BON domain AL538_11575 PF13580 SIS domain AL538_11580 PF02021 Uncharacterised protein family UPF0102 AL538_11585 PF04348 LppC putative lipoprotein AL538_11590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL538_11600 PF01795 MraW methylase family AL538_11605 PF04999 Cell division protein FtsL AL538_11610 PF00905 Penicillin binding protein transpeptidase domain AL538_11610 PF03717 Penicillin-binding Protein dimerisation domain AL538_11615 PF01225 Mur ligase family, catalytic domain AL538_11615 PF02875 Mur ligase family, glutamate ligase domain AL538_11615 PF08245 Mur ligase middle domain AL538_11620 PF08245 Mur ligase middle domain AL538_11620 PF02875 Mur ligase family, glutamate ligase domain AL538_11620 PF01225 Mur ligase family, catalytic domain AL538_11625 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AL538_11625 PF00953 Glycosyl transferase family 4 AL538_11630 PF08245 Mur ligase middle domain AL538_11630 PF02875 Mur ligase family, glutamate ligase domain AL538_11635 PF01098 Cell cycle protein AL538_11640 PF03033 Glycosyltransferase family 28 N-terminal domain AL538_11640 PF04101 Glycosyltransferase family 28 C-terminal domain AL538_11645 PF08245 Mur ligase middle domain AL538_11645 PF01225 Mur ligase family, catalytic domain AL538_11645 PF02875 Mur ligase family, glutamate ligase domain AL538_11650 PF03799 Cell division protein FtsQ AL538_11650 PF08478 POTRA domain, FtsQ-type AL538_11655 PF02491 SHS2 domain inserted in FTSA AL538_11660 PF12327 FtsZ family, C-terminal domain AL538_11660 PF00091 Tubulin/FtsZ family, GTPase domain AL538_11665 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL538_11670 PF07517 SecA DEAD-like domain AL538_11670 PF07516 SecA Wing and Scaffold domain AL538_11670 PF01043 SecA preprotein cross-linking domain AL538_11670 PF02810 SEC-C motif AL538_11675 PF00293 NUDIX domain AL538_11680 PF05173 Dihydrodipicolinate reductase, C-terminus AL538_11680 PF01113 Dihydrodipicolinate reductase, N-terminus AL538_11685 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL538_11685 PF00117 Glutamine amidotransferase class-I AL538_11690 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL538_11690 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL538_11690 PF02142 MGS-like domain AL538_11710 PF01925 Sulfite exporter TauE/SafE AL538_11715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_11715 PF03466 LysR substrate binding domain AL538_11720 PF03458 UPF0126 domain AL538_11725 PF01497 Periplasmic binding protein AL538_11735 PF01048 Phosphorylase superfamily AL538_11745 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL538_11745 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_11750 PF00310 Glutamine amidotransferases class-II AL538_11750 PF04898 Glutamate synthase central domain AL538_11750 PF01645 Conserved region in glutamate synthase AL538_11750 PF01493 GXGXG motif AL538_11755 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_11755 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL538_11760 PF01493 GXGXG motif AL538_11760 PF01645 Conserved region in glutamate synthase AL538_11760 PF04898 Glutamate synthase central domain AL538_11760 PF00310 Glutamine amidotransferases class-II AL538_11765 PF04055 Radical SAM superfamily AL538_11765 PF16199 Radical_SAM C-terminal domain AL538_11770 PF01590 GAF domain AL538_11770 PF00990 Diguanylate cyclase, GGDEF domain AL538_11770 PF00360 Phytochrome region AL538_11770 PF00563 EAL domain AL538_11780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_11780 PF00989 PAS fold AL538_11780 PF00512 His Kinase A (phospho-acceptor) domain AL538_11780 PF01627 Hpt domain AL538_11780 PF00072 Response regulator receiver domain AL538_11780 PF18415 Histidine kinase receptor ArcB trans-membrane domain AL538_11790 PF00072 Response regulator receiver domain AL538_11790 PF00486 Transcriptional regulatory protein, C terminal AL538_11800 PF03737 Aldolase/RraA AL538_11810 PF01842 ACT domain AL538_11810 PF13840 ACT domain AL538_11810 PF00742 Homoserine dehydrogenase AL538_11810 PF03447 Homoserine dehydrogenase, NAD binding domain AL538_11810 PF00696 Amino acid kinase family AL538_11815 PF00288 GHMP kinases N terminal domain AL538_11815 PF08544 GHMP kinases C terminal AL538_11820 PF00291 Pyridoxal-phosphate dependent enzyme AL538_11820 PF14821 Threonine synthase N terminus AL538_11825 PF03358 NADPH-dependent FMN reductase AL538_11830 PF01228 Glycine radical AL538_11835 PF01261 Xylose isomerase-like TIM barrel AL538_11840 PF03167 Uracil DNA glycosylase superfamily AL538_11855 PF01235 Sodium:alanine symporter family AL538_11860 PF03883 Peroxide stress protein YaaA AL538_11870 PF00271 Helicase conserved C-terminal domain AL538_11870 PF00270 DEAD/DEAH box helicase AL538_11875 PF05175 Methyltransferase small domain AL538_11880 PF05525 Branched-chain amino acid transport protein AL538_11885 PF00258 Flavodoxin AL538_11890 PF00589 Phage integrase family AL538_11890 PF02899 Phage integrase, N-terminal SAM-like domain AL538_11895 PF10411 Disulfide bond isomerase protein N-terminus AL538_11895 PF13098 Thioredoxin-like domain AL538_11900 PF01368 DHH family AL538_11900 PF17768 RecJ OB domain AL538_11900 PF02272 DHHA1 domain AL538_11910 PF00152 tRNA synthetases class II (D, K and N) AL538_11910 PF01336 OB-fold nucleic acid binding domain AL538_11915 PF02954 Bacterial regulatory protein, Fis family AL538_11915 PF00072 Response regulator receiver domain AL538_11915 PF00158 Sigma-54 interaction domain AL538_11925 PF00248 Aldo/keto reductase family AL538_11935 PF02976 DNA mismatch repair enzyme MutH AL538_11940 PF00293 NUDIX domain AL538_11945 PF00391 PEP-utilising enzyme, mobile domain AL538_11945 PF05524 PEP-utilising enzyme, N-terminal AL538_11945 PF02896 PEP-utilising enzyme, TIM barrel domain AL538_11945 PF01590 GAF domain AL538_11950 PF01925 Sulfite exporter TauE/SafE AL538_11955 PF01790 Prolipoprotein diacylglyceryl transferase AL538_11960 PF00303 Thymidylate synthase AL538_11965 PF02690 Na+/Pi-cotransporter AL538_11970 PF03466 LysR substrate binding domain AL538_11970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_11975 PF01022 Bacterial regulatory protein, arsR family AL538_11980 PF01649 Ribosomal protein S20 AL538_11985 PF03023 Lipid II flippase MurJ AL538_11990 PF01687 Riboflavin kinase AL538_11990 PF06574 FAD synthetase AL538_11995 PF08264 Anticodon-binding domain of tRNA AL538_11995 PF00133 tRNA synthetases class I (I, L, M and V) AL538_11995 PF06827 Zinc finger found in FPG and IleRS AL538_12000 PF01252 Signal peptidase (SPase) II AL538_12005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL538_12010 PF02401 LytB protein AL538_12015 PF04397 LytTr DNA-binding domain AL538_12015 PF00072 Response regulator receiver domain AL538_12020 PF06580 Histidine kinase AL538_12020 PF07694 5TMR of 5TMR-LYT AL538_12025 PF02554 Carbon starvation protein CstA AL538_12040 PF01380 SIS domain AL538_12045 PF03702 Anhydro-N-acetylmuramic acid kinase AL538_12050 PF00933 Glycosyl hydrolase family 3 N terminal domain AL538_12055 PF00793 DAHP synthetase I family AL538_12060 PF01817 Chorismate mutase type II AL538_12060 PF02153 Prephenate dehydrogenase AL538_12065 PF04225 Opacity-associated protein A LysM-like domain AL538_12065 PF01551 Peptidase family M23 AL538_12070 PF07238 PilZ domain AL538_12075 PF00005 ABC transporter AL538_12075 PF12848 ABC transporter AL538_12080 PF14718 Soluble lytic murein transglycosylase L domain AL538_12080 PF01464 Transglycosylase SLT domain AL538_12085 PF01371 Trp repressor protein AL538_12090 PF01931 Protein of unknown function DUF84 AL538_12095 PF00800 Prephenate dehydratase AL538_12095 PF01817 Chorismate mutase type II AL538_12100 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL538_12105 PF01464 Transglycosylase SLT domain AL538_12110 PF13525 Outer membrane lipoprotein AL538_12115 PF01479 S4 domain AL538_12115 PF00849 RNA pseudouridylate synthase AL538_12125 PF00004 ATPase family associated with various cellular activities (AAA) AL538_12125 PF02861 Clp amino terminal domain, pathogenicity island component AL538_12125 PF07724 AAA domain (Cdc48 subfamily) AL538_12125 PF17871 AAA lid domain AL538_12125 PF10431 C-terminal, D2-small domain, of ClpB protein AL538_12170 PF03411 Penicillin-insensitive murein endopeptidase AL538_12180 PF00037 4Fe-4S binding domain AL538_12190 PF04381 Putative exonuclease, RdgC AL538_12195 PF00486 Transcriptional regulatory protein, C terminal AL538_12195 PF00072 Response regulator receiver domain AL538_12200 PF11808 Phosphate regulon sensor protein PhoR AL538_12200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_12200 PF00512 His Kinase A (phospho-acceptor) domain AL538_12200 PF00989 PAS fold AL538_12205 PF12849 PBP superfamily domain AL538_12210 PF02541 Ppx/GppA phosphatase family AL538_12215 PF02503 Polyphosphate kinase middle domain AL538_12215 PF13090 Polyphosphate kinase C-terminal domain 2 AL538_12215 PF13089 Polyphosphate kinase N-terminal domain AL538_12215 PF17941 Polyphosphate kinase C-terminal domain 1 AL538_12220 PF00528 Binding-protein-dependent transport system inner membrane component AL538_12225 PF00528 Binding-protein-dependent transport system inner membrane component AL538_12230 PF00005 ABC transporter AL538_12235 PF01895 PhoU domain AL538_12250 PF03466 LysR substrate binding domain AL538_12250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_12255 PF03976 Polyphosphate kinase 2 (PPK2) AL538_12260 PF03932 CutC family AL538_12265 PF00578 AhpC/TSA family AL538_12265 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL538_12270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_12270 PF03466 LysR substrate binding domain AL538_12275 PF01274 Malate synthase AL538_12280 PF00463 Isocitrate lyase family AL538_12285 PF00571 CBS domain AL538_12300 PF02547 Queuosine biosynthesis protein AL538_12305 PF01702 Queuine tRNA-ribosyltransferase AL538_12310 PF02699 Preprotein translocase subunit AL538_12315 PF13721 SecD export protein N-terminal TM region AL538_12315 PF07549 SecD/SecF GG Motif AL538_12315 PF02355 Protein export membrane protein AL538_12320 PF07549 SecD/SecF GG Motif AL538_12320 PF02355 Protein export membrane protein AL538_12335 PF00459 Inositol monophosphatase family AL538_12340 PF00588 SpoU rRNA Methylase family AL538_12345 PF02082 Transcriptional regulator AL538_12350 PF00266 Aminotransferase class-V AL538_12355 PF01592 NifU-like N terminal domain AL538_12360 PF01521 Iron-sulphur cluster biosynthesis AL538_12365 PF07743 HSCB C-terminal oligomerisation domain AL538_12365 PF00226 DnaJ domain AL538_12370 PF00012 Hsp70 protein AL538_12375 PF00111 2Fe-2S iron-sulfur cluster binding domain AL538_12380 PF04384 Iron-sulphur cluster assembly AL538_12385 PF00883 Cytosol aminopeptidase family, catalytic domain AL538_12385 PF12404 Peptidase AL538_12390 PF00334 Nucleoside diphosphate kinase AL538_12395 PF04055 Radical SAM superfamily AL538_12400 PF13464 Domain of unknown function (DUF4115) AL538_12405 PF04551 GcpE protein AL538_12410 PF03129 Anticodon binding domain AL538_12410 PF13393 Histidyl-tRNA synthetase AL538_12415 PF09976 Tetratricopeptide repeat-like domain AL538_12420 PF13360 PQQ-like domain AL538_12425 PF01926 50S ribosome-binding GTPase AL538_12425 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL538_12435 PF00990 Diguanylate cyclase, GGDEF domain AL538_12435 PF13185 GAF domain AL538_12440 PF13742 OB-fold nucleic acid binding domain AL538_12440 PF02601 Exonuclease VII, large subunit AL538_12445 PF00478 IMP dehydrogenase / GMP reductase domain AL538_12445 PF00571 CBS domain AL538_12450 PF00958 GMP synthase C terminal domain AL538_12450 PF00117 Glutamine amidotransferase class-I AL538_12450 PF02540 NAD synthase AL538_12455 PF03553 Na+/H+ antiporter family AL538_12460 PF06483 Chitinase C AL538_12460 PF00704 Glycosyl hydrolases family 18 AL538_12465 PF01184 GPR1/FUN34/yaaH family AL538_12470 PF01235 Sodium:alanine symporter family AL538_12475 PF01266 FAD dependent oxidoreductase AL538_12480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_12480 PF03466 LysR substrate binding domain AL538_12495 PF01053 Cys/Met metabolism PLP-dependent enzyme AL538_12500 PF01521 Iron-sulphur cluster biosynthesis AL538_12505 PF01458 Uncharacterized protein family (UPF0051) AL538_12510 PF00005 ABC transporter AL538_12515 PF01458 Uncharacterized protein family (UPF0051) AL538_12520 PF00266 Aminotransferase class-V AL538_12525 PF02657 Fe-S metabolism associated domain AL538_12535 PF00202 Aminotransferase class-III AL538_12555 PF12805 FUSC-like inner membrane protein yccS AL538_12560 PF03466 LysR substrate binding domain AL538_12560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_12615 PF04002 RadC-like JAB domain AL538_12675 PF13356 Arm DNA-binding domain AL538_12675 PF00589 Phage integrase family AL538_12685 PF01668 SmpB protein AL538_12690 PF03364 Polyketide cyclase / dehydrase and lipid transport AL538_12695 PF03658 RnfH family Ubiquitin AL538_12700 PF04355 SmpA / OmlA family AL538_12705 PF02463 RecF/RecN/SMC N terminal domain AL538_12715 PF01513 ATP-NAD kinase AL538_12720 PF01025 GrpE AL538_12725 PF00375 Sodium:dicarboxylate symporter family AL538_12730 PF00012 Hsp70 protein AL538_12735 PF00684 DnaJ central domain AL538_12735 PF00226 DnaJ domain AL538_12735 PF01556 DnaJ C terminal domain AL538_12740 PF07963 Prokaryotic N-terminal methylation motif AL538_12740 PF00114 Pilin (bacterial filament) AL538_12745 PF00114 Pilin (bacterial filament) AL538_12745 PF07963 Prokaryotic N-terminal methylation motif AL538_12765 PF03806 AbgT putative transporter family AL538_12770 PF14437 MafB19-like deaminase AL538_12775 PF01464 Transglycosylase SLT domain AL538_12775 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL538_12780 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL538_12780 PF02769 AIR synthase related protein, C-terminal domain AL538_12780 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL538_12810 PF07687 Peptidase dimerisation domain AL538_12810 PF01546 Peptidase family M20/M25/M40 AL538_12815 PF00860 Permease family AL538_12820 PF00156 Phosphoribosyl transferase domain AL538_12830 PF07417 Sigma factor-binding transcriptional regulator Crl AL538_12835 PF01472 PUA domain AL538_12835 PF00696 Amino acid kinase family AL538_12840 PF00171 Aldehyde dehydrogenase family AL538_12845 PF03477 ATP cone domain AL538_12850 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL538_12850 PF01872 RibD C-terminal domain AL538_12855 PF00677 Lumazine binding domain AL538_12860 PF00925 GTP cyclohydrolase II AL538_12860 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL538_12865 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL538_12870 PF01029 NusB family AL538_12875 PF00586 AIR synthase related protein, N-terminal domain AL538_12875 PF02769 AIR synthase related protein, C-terminal domain AL538_12880 PF04608 Phosphatidylglycerophosphatase A AL538_12885 PF02780 Transketolase, C-terminal domain AL538_12885 PF02779 Transketolase, pyrimidine binding domain AL538_12885 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL538_12890 PF00348 Polyprenyl synthetase AL538_12895 PF02609 Exonuclease VII small subunit AL538_12900 PF01618 MotA/TolQ/ExbB proton channel family AL538_12905 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL538_12905 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL538_12905 PF00691 OmpA family AL538_12905 PF00691 OmpA family AL538_12910 PF02568 Thiamine biosynthesis protein (ThiI) AL538_12910 PF02926 THUMP domain AL538_12915 PF03466 LysR substrate binding domain AL538_12915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_12925 PF04241 Protein of unknown function (DUF423) AL538_12930 PF18125 RlmM ferredoxin-like domain AL538_12930 PF01728 FtsJ-like methyltransferase AL538_12935 PF01223 DNA/RNA non-specific endonuclease AL538_12940 PF01367 5'-3' exonuclease, C-terminal SAM fold AL538_12940 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL538_12945 PF03641 Possible lysine decarboxylase AL538_12945 PF11892 Domain of unknown function (DUF3412) AL538_12945 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AL538_12950 PF00990 Diguanylate cyclase, GGDEF domain AL538_12960 PF14489 QueF-like protein AL538_12960 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL538_12965 PF07348 Syd protein (SUKH-2) AL538_12970 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AL538_12975 PF00149 Calcineurin-like phosphoesterase AL538_12975 PF02872 5'-nucleotidase, C-terminal domain AL538_12985 PF03180 NLPA lipoprotein AL538_12990 PF00528 Binding-protein-dependent transport system inner membrane component AL538_12995 PF09383 NIL domain AL538_12995 PF00005 ABC transporter AL538_13005 PF00356 Bacterial regulatory proteins, lacI family AL538_13010 PF00367 phosphotransferase system, EIIB AL538_13010 PF02378 Phosphotransferase system, EIIC AL538_13015 PF00128 Alpha amylase, catalytic domain AL538_13015 PF16657 Maltogenic Amylase, C-terminal domain AL538_13030 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AL538_13030 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL538_13035 PF00464 Serine hydroxymethyltransferase AL538_13040 PF04055 Radical SAM superfamily AL538_13040 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL538_13045 PF03099 Biotin/lipoate A/B protein ligase family AL538_13050 PF04359 Protein of unknown function (DUF493) AL538_13055 PF07943 Penicillin-binding protein 5, C-terminal domain AL538_13055 PF00768 D-alanyl-D-alanine carboxypeptidase AL538_13060 PF05036 Sporulation related domain AL538_13060 PF03330 Lytic transglycolase AL538_13065 PF01098 Cell cycle protein AL538_13070 PF00905 Penicillin binding protein transpeptidase domain AL538_13070 PF03717 Penicillin-binding Protein dimerisation domain AL538_13075 PF02590 Predicted SPOUT methyltransferase AL538_13085 PF06144 DNA polymerase III, delta subunit AL538_13085 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AL538_13090 PF04390 Lipopolysaccharide-assembly AL538_13095 PF13603 Leucyl-tRNA synthetase, Domain 2 AL538_13095 PF00133 tRNA synthetases class I (I, L, M and V) AL538_13095 PF08264 Anticodon-binding domain of tRNA AL538_13100 PF07295 Zinc-ribbon containing domain AL538_13105 PF00795 Carbon-nitrogen hydrolase AL538_13110 PF00571 CBS domain AL538_13110 PF03471 Transporter associated domain AL538_13115 PF02130 Uncharacterized protein family UPF0054 AL538_13120 PF02562 PhoH-like protein AL538_13125 PF00919 Uncharacterized protein family UPF0004 AL538_13125 PF01938 TRAM domain AL538_13125 PF04055 Radical SAM superfamily AL538_13130 PF01494 FAD binding domain AL538_13240 PF01926 50S ribosome-binding GTPase AL538_13240 PF06071 Protein of unknown function (DUF933) AL538_13245 PF01195 Peptidyl-tRNA hydrolase AL538_13250 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL538_13250 PF14572 Phosphoribosyl synthetase-associated domain AL538_13255 PF00288 GHMP kinases N terminal domain AL538_13255 PF08544 GHMP kinases C terminal AL538_13260 PF03550 Outer membrane lipoprotein LolB AL538_13265 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL538_13265 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL538_13265 PF01488 Shikimate / quinate 5-dehydrogenase AL538_13270 PF00472 RF-1 domain AL538_13270 PF03462 PCRF domain AL538_13275 PF13847 Methyltransferase domain AL538_13275 PF17827 PrmC N-terminal domain AL538_13280 PF04247 Invasion gene expression up-regulator, SirB AL538_13285 PF13369 Transglutaminase-like superfamily AL538_13290 PF00793 DAHP synthetase I family AL538_13295 PF00149 Calcineurin-like phosphoesterase AL538_13295 PF02872 5'-nucleotidase, C-terminal domain AL538_13300 PF04073 Aminoacyl-tRNA editing domain AL538_13305 PF00849 RNA pseudouridylate synthase AL538_13305 PF01479 S4 domain AL538_13310 PF01713 Smr domain AL538_13335 PF03173 Putative carbohydrate binding domain AL538_13335 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL538_13335 PF02838 Glycosyl hydrolase family 20, domain 2 AL538_13335 PF00728 Glycosyl hydrolase family 20, catalytic domain AL538_13350 PF00403 Heavy-metal-associated domain AL538_13355 PF13609 Gram-negative porin AL538_13360 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL538_13365 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL538_13370 PF00691 OmpA family AL538_13370 PF01389 OmpA-like transmembrane domain AL538_13425 PF00072 Response regulator receiver domain AL538_13425 PF01584 CheW-like domain AL538_13430 PF03705 CheR methyltransferase, all-alpha domain AL538_13430 PF01739 CheR methyltransferase, SAM binding domain AL538_13435 PF00460 Flagella basal body rod protein AL538_13440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL538_13440 PF00460 Flagella basal body rod protein AL538_13445 PF03963 Flagellar hook capping protein - N-terminal region AL538_13445 PF13860 FlgD Ig-like domain AL538_13445 PF13861 FlgD Tudor-like domain AL538_13450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL538_13450 PF00460 Flagella basal body rod protein AL538_13450 PF07559 Flagellar basal body protein FlaE AL538_13455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL538_13455 PF00460 Flagella basal body rod protein AL538_13460 PF00460 Flagella basal body rod protein AL538_13460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL538_13465 PF02107 Flagellar L-ring protein AL538_13470 PF02119 Flagellar P-ring protein AL538_13475 PF10135 Rod binding protein AL538_13475 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL538_13480 PF07196 Flagellin hook IN motif AL538_13480 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL538_13490 PF00669 Bacterial flagellin N-terminal helical region AL538_13490 PF07196 Flagellin hook IN motif AL538_13490 PF00700 Bacterial flagellin C-terminal helical region AL538_13495 PF00700 Bacterial flagellin C-terminal helical region AL538_13495 PF07196 Flagellin hook IN motif AL538_13495 PF00669 Bacterial flagellin N-terminal helical region AL538_13500 PF00669 Bacterial flagellin N-terminal helical region AL538_13500 PF07196 Flagellin hook IN motif AL538_13500 PF00700 Bacterial flagellin C-terminal helical region AL538_13505 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL538_13510 PF00391 PEP-utilising enzyme, mobile domain AL538_13510 PF02896 PEP-utilising enzyme, TIM barrel domain AL538_13510 PF05524 PEP-utilising enzyme, N-terminal AL538_13515 PF00381 PTS HPr component phosphorylation site AL538_13520 PF00291 Pyridoxal-phosphate dependent enzyme AL538_13530 PF04354 ZipA, C-terminal FtsZ-binding domain AL538_13535 PF00533 BRCA1 C Terminus (BRCT) domain AL538_13535 PF03120 NAD-dependent DNA ligase OB-fold domain AL538_13535 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AL538_13535 PF12826 Helix-hairpin-helix motif AL538_13535 PF01653 NAD-dependent DNA ligase adenylation domain AL538_13540 PF03573 outer membrane porin, OprD family AL538_13555 PF16200 C-terminal region of band_7 AL538_13555 PF01145 SPFH domain / Band 7 family AL538_13560 PF00085 Thioredoxin AL538_13565 PF00106 short chain dehydrogenase AL538_13570 PF01370 NAD dependent epimerase/dehydratase family AL538_13570 PF08338 Domain of unknown function (DUF1731) AL538_13575 PF07556 Protein of unknown function (DUF1538) AL538_13580 PF07556 Protein of unknown function (DUF1538) AL538_13600 PF12850 Calcineurin-like phosphoesterase superfamily domain AL538_13615 PF17323 Trans-membrane regulatory protein ToxS AL538_13620 PF00486 Transcriptional regulatory protein, C terminal AL538_13625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_13625 PF00183 Hsp90 protein AL538_13630 PF05191 Adenylate kinase, active site lid AL538_13635 PF00762 Ferrochelatase AL538_13640 PF00854 POT family AL538_13645 PF02357 Transcription termination factor nusG AL538_13650 PF13537 Glutamine amidotransferase domain AL538_13650 PF00733 Asparagine synthase AL538_13655 PF00999 Sodium/hydrogen exchanger family AL538_13655 PF02254 TrkA-N domain AL538_13660 PF01047 MarR family AL538_13660 PF00480 ROK family AL538_13665 PF01979 Amidohydrolase family AL538_13670 PF02378 Phosphotransferase system, EIIC AL538_13670 PF00367 phosphotransferase system, EIIB AL538_13670 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL538_13675 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL538_13675 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL538_13680 PF08334 Type II secretion system (T2SS), protein G AL538_13680 PF07963 Prokaryotic N-terminal methylation motif AL538_13685 PF01475 Ferric uptake regulator family AL538_13695 PF00258 Flavodoxin AL538_13705 PF00561 alpha/beta hydrolase fold AL538_13715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL538_13715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL538_13715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL538_13715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL538_13730 PF01784 NIF3 (NGG1p interacting factor 3) AL538_13735 PF00285 Citrate synthase, C-terminal domain AL538_13740 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL538_13745 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL538_13750 PF00890 FAD binding domain AL538_13750 PF02910 Fumarate reductase flavoprotein C-term AL538_13755 PF13085 2Fe-2S iron-sulfur cluster binding domain AL538_13760 PF02779 Transketolase, pyrimidine binding domain AL538_13760 PF16870 2-oxoglutarate dehydrogenase C-terminal AL538_13760 PF16078 2-oxoglutarate dehydrogenase N-terminus AL538_13760 PF00676 Dehydrogenase E1 component AL538_13765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL538_13765 PF02817 e3 binding domain AL538_13765 PF00364 Biotin-requiring enzyme AL538_13770 PF08442 ATP-grasp domain AL538_13770 PF00549 CoA-ligase AL538_13775 PF00549 CoA-ligase AL538_13775 PF02629 CoA binding domain AL538_13780 PF00950 ABC 3 transport family AL538_13785 PF00005 ABC transporter AL538_13790 PF01297 Zinc-uptake complex component A periplasmic AL538_13795 PF12833 Helix-turn-helix domain AL538_13795 PF02311 AraC-like ligand binding domain AL538_13800 PF04023 FeoA domain AL538_13805 PF07664 Ferrous iron transport protein B C terminus AL538_13805 PF17910 FeoB cytosolic helical domain AL538_13805 PF02421 Ferrous iron transport protein B AL538_13805 PF07670 Nucleoside recognition AL538_13825 PF00750 tRNA synthetases class I (R) AL538_13825 PF05746 DALR anticodon binding domain AL538_13825 PF03485 Arginyl tRNA synthetase N terminal domain AL538_13830 PF06185 YecM protein AL538_13835 PF00551 Formyl transferase AL538_13835 PF01842 ACT domain AL538_13840 PF13307 Helicase C-terminal domain AL538_13840 PF04851 Type III restriction enzyme, res subunit AL538_13845 PF00814 Glycoprotease family AL538_13855 PF03843 Outer membrane lipoprotein Slp family AL538_13860 PF00561 alpha/beta hydrolase fold AL538_13865 PF00501 AMP-binding enzyme AL538_13865 PF13193 AMP-binding enzyme C-terminal domain AL538_13870 PF00570 HRDC domain AL538_13870 PF01612 3'-5' exonuclease AL538_13875 PF03776 Septum formation topological specificity factor MinE AL538_13880 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL538_13885 PF03775 Septum formation inhibitor MinC, C-terminal domain AL538_13885 PF05209 Septum formation inhibitor MinC, N-terminal domain AL538_13890 PF05166 YcgL domain AL538_13895 PF13406 Transglycosylase SLT domain AL538_13900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_13900 PF03466 LysR substrate binding domain AL538_13905 PF01773 Na+ dependent nucleoside transporter N-terminus AL538_13905 PF07662 Na+ dependent nucleoside transporter C-terminus AL538_13905 PF07670 Nucleoside recognition AL538_13910 PF00145 C-5 cytosine-specific DNA methylase AL538_13920 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL538_13920 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL538_13930 PF02899 Phage integrase, N-terminal SAM-like domain AL538_13930 PF00589 Phage integrase family AL538_13965 PF14338 Mrr N-terminal domain AL538_13965 PF04471 Restriction endonuclease AL538_13970 PF18766 SWI2/SNF2 ATPase AL538_13970 PF12008 Type I restriction and modification enzyme - subunit R C terminal AL538_13970 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL538_13980 PF12161 HsdM N-terminal domain AL538_13980 PF02384 N-6 DNA Methylase AL538_14030 PF02801 Beta-ketoacyl synthase, C-terminal domain AL538_14030 PF00109 Beta-ketoacyl synthase, N-terminal domain AL538_14040 PF07977 FabA-like domain AL538_14045 PF00109 Beta-ketoacyl synthase, N-terminal domain AL538_14045 PF02801 Beta-ketoacyl synthase, C-terminal domain AL538_14070 PF00221 Aromatic amino acid lyase AL538_14075 PF00535 Glycosyl transferase family 2 AL538_14080 PF07977 FabA-like domain AL538_14085 PF13193 AMP-binding enzyme C-terminal domain AL538_14085 PF00501 AMP-binding enzyme AL538_14095 PF00550 Phosphopantetheine attachment site AL538_14100 PF00550 Phosphopantetheine attachment site AL538_14125 PF04820 Tryptophan halogenase AL538_14150 PF00425 chorismate binding enzyme AL538_14155 PF00501 AMP-binding enzyme AL538_14155 PF13193 AMP-binding enzyme C-terminal domain AL538_14160 PF00550 Phosphopantetheine attachment site AL538_14160 PF00857 Isochorismatase family AL538_14165 PF00501 AMP-binding enzyme AL538_14165 PF00550 Phosphopantetheine attachment site AL538_14165 PF00975 Thioesterase domain AL538_14165 PF00668 Condensation domain AL538_14165 PF00550 Phosphopantetheine attachment site AL538_14165 PF00668 Condensation domain AL538_14165 PF13193 AMP-binding enzyme C-terminal domain AL538_14165 PF00501 AMP-binding enzyme AL538_14165 PF13193 AMP-binding enzyme C-terminal domain AL538_14165 PF00975 Thioesterase domain AL538_14180 PF00593 TonB dependent receptor AL538_14180 PF07715 TonB-dependent Receptor Plug Domain AL538_14185 PF00571 CBS domain AL538_14185 PF03471 Transporter associated domain AL538_14185 PF01595 Cyclin M transmembrane N-terminal domain AL538_14190 PF00270 DEAD/DEAH box helicase AL538_14190 PF00271 Helicase conserved C-terminal domain AL538_14195 PF02254 TrkA-N domain AL538_14195 PF02080 TrkA-C domain AL538_14200 PF02386 Cation transport protein AL538_14210 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL538_14215 PF03480 Bacterial extracellular solute-binding protein, family 7 AL538_14220 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL538_14225 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL538_14235 PF00158 Sigma-54 interaction domain AL538_14235 PF00072 Response regulator receiver domain AL538_14235 PF02954 Bacterial regulatory protein, Fis family AL538_14240 PF00512 His Kinase A (phospho-acceptor) domain AL538_14240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_14240 PF02743 Cache domain AL538_14245 PF05697 Bacterial trigger factor protein (TF) AL538_14245 PF05698 Bacterial trigger factor protein (TF) C-terminus AL538_14245 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL538_14250 PF00574 Clp protease AL538_14255 PF07724 AAA domain (Cdc48 subfamily) AL538_14255 PF06689 ClpX C4-type zinc finger AL538_14255 PF10431 C-terminal, D2-small domain, of ClpB protein AL538_14260 PF00004 ATPase family associated with various cellular activities (AAA) AL538_14260 PF05362 Lon protease (S16) C-terminal proteolytic domain AL538_14260 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL538_14265 PF00216 Bacterial DNA-binding protein AL538_14270 PF13145 PPIC-type PPIASE domain AL538_14290 PF13286 Phosphohydrolase-associated domain AL538_14290 PF01966 HD domain AL538_14300 PF00155 Aminotransferase class I and II AL538_14305 PF00425 chorismate binding enzyme AL538_14310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL538_14310 PF16582 Middle domain of thiamine pyrophosphate AL538_14310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL538_14315 PF12697 Alpha/beta hydrolase family AL538_14320 PF00378 Enoyl-CoA hydratase/isomerase AL538_14325 PF13378 Enolase C-terminal domain-like AL538_14330 PF00501 AMP-binding enzyme AL538_14330 PF13193 AMP-binding enzyme C-terminal domain AL538_14335 PF00367 phosphotransferase system, EIIB AL538_14335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL538_14335 PF02378 Phosphotransferase system, EIIC AL538_14340 PF03466 LysR substrate binding domain AL538_14340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_14350 PF03601 Conserved hypothetical protein 698 AL538_14355 PF07690 Major Facilitator Superfamily AL538_14400 PF13533 Biotin-lipoyl like AL538_14405 PF00873 AcrB/AcrD/AcrF family AL538_14425 PF00291 Pyridoxal-phosphate dependent enzyme AL538_14430 PF01037 Lrp/AsnC ligand binding domain AL538_14430 PF13404 AsnC-type helix-turn-helix domain AL538_14440 PF01609 Transposase DDE domain AL538_14440 PF13006 Insertion element 4 transposase N-terminal AL538_14450 PF09619 Type III secretion system lipoprotein chaperone (YscW) AL538_14455 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL538_14465 PF05230 MASE2 domain AL538_14465 PF00990 Diguanylate cyclase, GGDEF domain AL538_14475 PF00689 Cation transporting ATPase, C-terminus AL538_14475 PF00690 Cation transporter/ATPase, N-terminus AL538_14480 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL538_14480 PF00588 SpoU rRNA Methylase family AL538_14485 PF00037 4Fe-4S binding domain AL538_14485 PF11953 Domain of unknown function (DUF3470) AL538_14495 PF00478 IMP dehydrogenase / GMP reductase domain AL538_14495 PF00571 CBS domain AL538_14500 PF01554 MatE AL538_14505 PF00403 Heavy-metal-associated domain AL538_14510 PF01048 Phosphorylase superfamily AL538_14520 PF00672 HAMP domain AL538_14520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_14525 PF01230 HIT domain AL538_14540 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL538_14540 PF13036 Peptidoglycan-synthase activator LpoB AL538_14550 PF05728 Uncharacterised protein family (UPF0227) AL538_14555 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_14570 PF17757 UvrB interaction domain AL538_14570 PF03461 TRCF domain AL538_14570 PF00270 DEAD/DEAH box helicase AL538_14570 PF00271 Helicase conserved C-terminal domain AL538_14570 PF02559 CarD-like/TRCF domain AL538_14580 PF12704 MacB-like periplasmic core domain AL538_14580 PF02687 FtsX-like permease family AL538_14585 PF00005 ABC transporter AL538_14590 PF12704 MacB-like periplasmic core domain AL538_14590 PF02687 FtsX-like permease family AL538_14600 PF00753 Metallo-beta-lactamase superfamily AL538_14600 PF03772 Competence protein AL538_14605 PF00005 ABC transporter AL538_14605 PF00664 ABC transporter transmembrane region AL538_14610 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AL538_14615 PF03966 Trm112p-like protein AL538_14620 PF02348 Cytidylyltransferase AL538_14625 PF04293 SpoVR like protein AL538_14630 PF04285 Protein of unknown function (DUF444) AL538_14635 PF06798 PrkA serine protein kinase C-terminal domain AL538_14635 PF08298 PrkA AAA domain AL538_14640 PF03887 YfbU domain AL538_14650 PF04055 Radical SAM superfamily AL538_14660 PF01228 Glycine radical AL538_14660 PF02901 Pyruvate formate lyase-like AL538_14675 PF00005 ABC transporter AL538_14680 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL538_14685 PF00528 Binding-protein-dependent transport system inner membrane component AL538_14690 PF00528 Binding-protein-dependent transport system inner membrane component AL538_14695 PF03372 Endonuclease/Exonuclease/phosphatase family AL538_14700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_14700 PF00672 HAMP domain AL538_14705 PF10689 Protein of unknown function (DUF2496) AL538_14715 PF01925 Sulfite exporter TauE/SafE AL538_14720 PF06733 DEAD_2 AL538_14720 PF13307 Helicase C-terminal domain AL538_14730 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL538_14735 PF00849 RNA pseudouridylate synthase AL538_14740 PF03971 Monomeric isocitrate dehydrogenase AL538_14745 PF00313 'Cold-shock' DNA-binding domain AL538_14750 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL538_14755 PF10431 C-terminal, D2-small domain, of ClpB protein AL538_14755 PF07724 AAA domain (Cdc48 subfamily) AL538_14755 PF17871 AAA lid domain AL538_14755 PF02861 Clp amino terminal domain, pathogenicity island component AL538_14755 PF00004 ATPase family associated with various cellular activities (AAA) AL538_14760 PF01176 Translation initiation factor 1A / IF-1 AL538_14765 PF04376 Arginine-tRNA-protein transferase, N terminus AL538_14765 PF04377 Arginine-tRNA-protein transferase, C terminus AL538_14770 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AL538_14780 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL538_14785 PF10692 Protein of unknown function (DUF2498) AL538_14790 PF01751 Toprim domain AL538_14790 PF08272 Topoisomerase I zinc-ribbon-like AL538_14790 PF01131 DNA topoisomerase AL538_14790 PF01396 Topoisomerase DNA binding C4 zinc finger AL538_14795 PF00483 Nucleotidyl transferase AL538_14800 PF08323 Starch synthase catalytic domain AL538_14800 PF00534 Glycosyl transferases group 1 AL538_14820 PF04993 TfoX N-terminal domain AL538_14820 PF04994 TfoX C-terminal domain AL538_14825 PF00356 Bacterial regulatory proteins, lacI family AL538_14830 PF02613 Nitrate reductase delta subunit AL538_14835 PF00486 Transcriptional regulatory protein, C terminal AL538_14835 PF00072 Response regulator receiver domain AL538_14840 PF02698 DUF218 domain AL538_14850 PF17193 MukF C-terminal domain AL538_14850 PF03882 MukF winged-helix domain AL538_14850 PF17192 MukF middle domain AL538_14855 PF04288 MukE-like family AL538_14860 PF16330 MukB hinge domain AL538_14860 PF04310 MukB N-terminal AL538_14865 PF08443 RimK-like ATP-grasp domain AL538_14865 PF18030 RimK PreATP-grasp domain AL538_14875 PF18030 RimK PreATP-grasp domain AL538_14875 PF08443 RimK-like ATP-grasp domain AL538_14880 PF08003 Protein of unknown function (DUF1698) AL538_14885 PF13649 Methyltransferase domain AL538_14890 PF01904 Protein of unknown function DUF72 AL538_14895 PF02938 GAD domain AL538_14895 PF00152 tRNA synthetases class II (D, K and N) AL538_14895 PF01336 OB-fold nucleic acid binding domain AL538_14900 PF02075 Crossover junction endodeoxyribonuclease RuvC AL538_14905 PF00672 HAMP domain AL538_14905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_14905 PF02203 Tar ligand binding domain homologue AL538_14910 PF01330 RuvA N terminal domain AL538_14910 PF07499 RuvA, C-terminal domain AL538_14915 PF17864 RuvB AAA lid domain AL538_14915 PF05491 RuvB C-terminal winged helix domain AL538_14915 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL538_14920 PF01654 Cytochrome bd terminal oxidase subunit I AL538_14925 PF02322 Cytochrome bd terminal oxidase subunit II AL538_14930 PF08173 Membrane bound YbgT-like protein AL538_14940 PF03061 Thioesterase superfamily AL538_14945 PF01618 MotA/TolQ/ExbB proton channel family AL538_14950 PF02472 Biopolymer transport protein ExbD/TolR AL538_14960 PF04052 TolB amino-terminal domain AL538_14960 PF07676 WD40-like Beta Propeller Repeat AL538_14965 PF00691 OmpA family AL538_14970 PF13174 Tetratricopeptide repeat AL538_14970 PF16331 TolA binding protein trimerisation AL538_14975 PF01380 SIS domain AL538_14975 PF00571 CBS domain AL538_14980 PF03928 Haem-degrading AL538_14985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL538_14985 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL538_14990 PF02896 PEP-utilising enzyme, TIM barrel domain AL538_14990 PF00391 PEP-utilising enzyme, mobile domain AL538_14990 PF00381 PTS HPr component phosphorylation site AL538_14990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL538_14990 PF05524 PEP-utilising enzyme, N-terminal AL538_15000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL538_15010 PF04055 Radical SAM superfamily AL538_15015 PF04321 RmlD substrate binding domain AL538_15020 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL538_15025 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL538_15030 PF12833 Helix-turn-helix domain AL538_15035 PF00465 Iron-containing alcohol dehydrogenase AL538_15040 PF13419 Haloacid dehalogenase-like hydrolase AL538_15045 PF01238 Phosphomannose isomerase type I AL538_15050 PF02445 Quinolinate synthetase A protein AL538_15060 PF03994 Domain of Unknown Function (DUF350) AL538_15070 PF03738 Glutathionylspermidine synthase preATP-grasp AL538_15080 PF00512 His Kinase A (phospho-acceptor) domain AL538_15080 PF09308 LuxQ, periplasmic AL538_15080 PF00072 Response regulator receiver domain AL538_15080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_15085 PF06610 L-alanine exporter AL538_15110 PF12833 Helix-turn-helix domain AL538_15140 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF AL538_15155 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI AL538_15160 PF01514 Secretory protein of YscJ/FliF family AL538_15170 PF02108 Flagellar assembly protein FliH AL538_15205 PF01312 FlhB HrpN YscU SpaS Family AL538_15210 PF01311 Bacterial export proteins, family 1 AL538_15215 PF01313 Bacterial export proteins, family 3 AL538_15220 PF00813 FliP family AL538_15225 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL538_15240 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL538_15240 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL538_15240 PF18269 T3SS EscN ATPase C-terminal domain AL538_15245 PF07201 HrpJ-like domain AL538_15250 PF09059 TyeA AL538_15270 PF00771 FHIPEP family AL538_15275 PF09621 Type III secretion system regulator (LcrR) AL538_15285 PF04792 V antigen (LcrV) protein AL538_15290 PF07720 Tetratricopeptide repeat AL538_15300 PF05844 YopD protein AL538_15305 PF13411 MerR HTH family regulatory protein AL538_15310 PF02627 Carboxymuconolactone decarboxylase family AL538_15315 PF11471 Maltoporin periplasmic N-terminal extension AL538_15315 PF02264 LamB porin AL538_15320 PF00356 Bacterial regulatory proteins, lacI family AL538_15325 PF00367 phosphotransferase system, EIIB AL538_15325 PF02378 Phosphotransferase system, EIIC AL538_15330 PF00294 pfkB family carbohydrate kinase AL538_15335 PF08244 Glycosyl hydrolases family 32 C terminal AL538_15335 PF00251 Glycosyl hydrolases family 32 N-terminal domain AL538_15340 PF03831 PhnA domain AL538_15340 PF08274 PhnA Zinc-Ribbon AL538_15350 PF07715 TonB-dependent Receptor Plug Domain AL538_15350 PF00593 TonB dependent receptor AL538_15355 PF00325 Bacterial regulatory proteins, crp family AL538_15355 PF00027 Cyclic nucleotide-binding domain AL538_15380 PF01554 MatE AL538_15385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_15385 PF00005 ABC transporter AL538_15390 PF00005 ABC transporter AL538_15390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_15395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL538_15400 PF00528 Binding-protein-dependent transport system inner membrane component AL538_15410 PF00672 HAMP domain AL538_15410 PF02743 Cache domain AL538_15410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_15415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_15415 PF03466 LysR substrate binding domain AL538_15420 PF00593 TonB dependent receptor AL538_15420 PF07715 TonB-dependent Receptor Plug Domain AL538_15440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_15440 PF00529 HlyD membrane-fusion protein of T1SS AL538_15445 PF00873 AcrB/AcrD/AcrF family AL538_15455 PF00392 Bacterial regulatory proteins, gntR family AL538_15455 PF07729 FCD domain AL538_15460 PF07687 Peptidase dimerisation domain AL538_15460 PF01546 Peptidase family M20/M25/M40 AL538_15465 PF03606 C4-dicarboxylate anaerobic carrier AL538_15475 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL538_15490 PF00474 Sodium:solute symporter family AL538_15505 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL538_15505 PF14579 Helix-hairpin-helix motif AL538_15505 PF02811 PHP domain AL538_15505 PF00929 Exonuclease AL538_15505 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL538_15510 PF00571 CBS domain AL538_15515 PF00392 Bacterial regulatory proteins, gntR family AL538_15515 PF07729 FCD domain AL538_15525 PF07729 FCD domain AL538_15525 PF00392 Bacterial regulatory proteins, gntR family AL538_15535 PF05426 Alginate lyase AL538_15535 PF07940 Heparinase II/III-like protein AL538_15540 PF07940 Heparinase II/III-like protein AL538_15540 PF05426 Alginate lyase AL538_15545 PF07883 Cupin domain AL538_15550 PF00294 pfkB family carbohydrate kinase AL538_15555 PF01081 KDPG and KHG aldolase AL538_15560 PF00474 Sodium:solute symporter family AL538_15570 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL538_15570 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL538_15575 PF00141 Peroxidase AL538_15585 PF00579 tRNA synthetases class I (W and Y) AL538_15600 PF03372 Endonuclease/Exonuclease/phosphatase family AL538_15605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_15605 PF00672 HAMP domain AL538_15605 PF02743 Cache domain AL538_15610 PF01752 Collagenase AL538_15610 PF08453 Peptidase family M9 N-terminal AL538_15610 PF04151 Bacterial pre-peptidase C-terminal domain AL538_15625 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AL538_15635 PF03466 LysR substrate binding domain AL538_15635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_15645 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL538_15645 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL538_15650 PF01037 Lrp/AsnC ligand binding domain AL538_15655 PF01580 FtsK/SpoIIIE family AL538_15655 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL538_15655 PF17854 FtsK alpha domain AL538_15655 PF09397 Ftsk gamma domain AL538_15660 PF03548 Outer membrane lipoprotein carrier protein LolA AL538_15665 PF12002 MgsA AAA+ ATPase C terminal AL538_15665 PF00004 ATPase family associated with various cellular activities (AAA) AL538_15665 PF16193 AAA C-terminal domain AL538_15670 PF02403 Seryl-tRNA synthetase N-terminal domain AL538_15670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL538_15685 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL538_15690 PF00202 Aminotransferase class-III AL538_15695 PF06968 Biotin and Thiamin Synthesis associated domain AL538_15695 PF04055 Radical SAM superfamily AL538_15700 PF00155 Aminotransferase class I and II AL538_15705 PF08241 Methyltransferase domain AL538_15715 PF01435 Peptidase family M48 AL538_15725 PF00106 short chain dehydrogenase AL538_15750 PF16036 Chalcone isomerase-like AL538_15760 PF00206 Lyase AL538_15760 PF08328 Adenylosuccinate lyase C-terminal AL538_15765 PF04356 Protein of unknown function (DUF489) AL538_15780 PF00294 pfkB family carbohydrate kinase AL538_15785 PF00816 H-NS histone family AL538_15790 PF03553 Na+/H+ antiporter family AL538_15795 PF00072 Response regulator receiver domain AL538_15795 PF00158 Sigma-54 interaction domain AL538_15795 PF02954 Bacterial regulatory protein, Fis family AL538_15800 PF01634 ATP phosphoribosyltransferase AL538_15800 PF08029 HisG, C-terminal domain AL538_15805 PF00815 Histidinol dehydrogenase AL538_15810 PF00155 Aminotransferase class I and II AL538_15815 PF08645 Polynucleotide kinase 3 phosphatase AL538_15815 PF00475 Imidazoleglycerol-phosphate dehydratase AL538_15820 PF00117 Glutamine amidotransferase class-I AL538_15825 PF00977 Histidine biosynthesis protein AL538_15830 PF00977 Histidine biosynthesis protein AL538_15835 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL538_15835 PF01502 Phosphoribosyl-AMP cyclohydrolase AL538_15840 PF02810 SEC-C motif AL538_15845 PF00563 EAL domain AL538_15845 PF08668 HDOD domain AL538_15850 PF00149 Calcineurin-like phosphoesterase AL538_15855 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL538_15860 PF01406 tRNA synthetases class I (C) catalytic domain AL538_15860 PF09190 DALR domain AL538_15865 PF00265 Thymidine kinase AL538_15870 PF02698 DUF218 domain AL538_15895 PF01226 Formate/nitrite transporter AL538_15900 PF03649 Uncharacterised protein family (UPF0014) AL538_15905 PF06796 Periplasmic nitrate reductase protein NapE AL538_15910 PF03264 NapC/NirT cytochrome c family, N-terminal region AL538_15915 PF01568 Molydopterin dinucleotide binding domain AL538_15915 PF18364 Molybdopterin oxidoreductase N-terminal domain AL538_15915 PF00384 Molybdopterin oxidoreductase AL538_15920 PF16874 Glycosyl hydrolase family 36 C-terminal domain AL538_15920 PF16875 Glycosyl hydrolase family 36 N-terminal domain AL538_15925 PF01297 Zinc-uptake complex component A periplasmic AL538_15930 PF00005 ABC transporter AL538_15935 PF00950 ABC 3 transport family AL538_15940 PF00950 ABC 3 transport family AL538_15945 PF02833 DHHA2 domain AL538_15945 PF01368 DHH family AL538_15955 PF00005 ABC transporter AL538_15960 PF00005 ABC transporter AL538_15960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_15965 PF12911 N-terminal TM domain of oligopeptide transport permease C AL538_15965 PF00528 Binding-protein-dependent transport system inner membrane component AL538_15970 PF00528 Binding-protein-dependent transport system inner membrane component AL538_15975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL538_15980 PF02954 Bacterial regulatory protein, Fis family AL538_15980 PF00158 Sigma-54 interaction domain AL538_15985 PF04012 PspA/IM30 family AL538_15990 PF06667 Phage shock protein B AL538_16005 PF13533 Biotin-lipoyl like AL538_16010 PF00873 AcrB/AcrD/AcrF family AL538_16015 PF03352 Methyladenine glycosylase AL538_16020 PF03280 Proteobacterial lipase chaperone protein AL538_16025 PF00561 alpha/beta hydrolase fold AL538_16030 PF01053 Cys/Met metabolism PLP-dependent enzyme AL538_16035 PF13396 Phospholipase_D-nuclease N-terminal AL538_16035 PF13091 PLD-like domain AL538_16040 PF00209 Sodium:neurotransmitter symporter family AL538_16045 PF00672 HAMP domain AL538_16045 PF12729 Four helix bundle sensory module for signal transduction AL538_16045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_16050 PF00849 RNA pseudouridylate synthase AL538_16060 PF00970 Oxidoreductase FAD-binding domain AL538_16060 PF00175 Oxidoreductase NAD-binding domain AL538_16060 PF00111 2Fe-2S iron-sulfur cluster binding domain AL538_16065 PF03063 Prismane/CO dehydrogenase family AL538_16070 PF00158 Sigma-54 interaction domain AL538_16070 PF01590 GAF domain AL538_16075 PF01066 CDP-alcohol phosphatidyltransferase AL538_16080 PF00005 ABC transporter AL538_16085 PF00528 Binding-protein-dependent transport system inner membrane component AL538_16090 PF13416 Bacterial extracellular solute-binding protein AL538_16095 PF09335 SNARE associated Golgi protein AL538_16105 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_16105 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL538_16115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_16115 PF00512 His Kinase A (phospho-acceptor) domain AL538_16120 PF00196 Bacterial regulatory proteins, luxR family AL538_16120 PF00072 Response regulator receiver domain AL538_16130 PF01740 STAS domain AL538_16130 PF00916 Sulfate permease family AL538_16140 PF06945 Protein of unknown function (DUF1289) AL538_16150 PF02872 5'-nucleotidase, C-terminal domain AL538_16150 PF00149 Calcineurin-like phosphoesterase AL538_16165 PF01386 Ribosomal L25p family AL538_16170 PF00535 Glycosyl transferase family 2 AL538_16170 PF02709 N-terminal domain of galactosyltransferase AL538_16180 PF16527 Two-component sensor protein CpxA, periplasmic domain AL538_16180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_16180 PF00512 His Kinase A (phospho-acceptor) domain AL538_16180 PF00672 HAMP domain AL538_16185 PF00072 Response regulator receiver domain AL538_16185 PF00486 Transcriptional regulatory protein, C terminal AL538_16195 PF00271 Helicase conserved C-terminal domain AL538_16195 PF04851 Type III restriction enzyme, res subunit AL538_16200 PF01479 S4 domain AL538_16200 PF00849 RNA pseudouridylate synthase AL538_16205 PF07690 Major Facilitator Superfamily AL538_16215 PF00474 Sodium:solute symporter family AL538_16220 PF16875 Glycosyl hydrolase family 36 N-terminal domain AL538_16220 PF16874 Glycosyl hydrolase family 36 C-terminal domain AL538_16225 PF00356 Bacterial regulatory proteins, lacI family AL538_16230 PF11066 Protein of unknown function (DUF2867) AL538_16230 PF13460 NAD(P)H-binding AL538_16235 PF01554 MatE AL538_16240 PF00005 ABC transporter AL538_16255 PF06965 Na+/H+ antiporter 1 AL538_16260 PF00440 Bacterial regulatory proteins, tetR family AL538_16260 PF16295 Tetracyclin repressor-like, C-terminal domain AL538_16265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL538_16265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL538_16265 PF09317 Domain of unknown function (DUF1974) AL538_16265 PF02770 Acyl-CoA dehydrogenase, middle domain AL538_16270 PF07055 Enoyl reductase FAD binding domain AL538_16270 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL538_16270 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL538_16275 PF02080 TrkA-C domain AL538_16275 PF06826 Predicted Permease Membrane Region AL538_16280 PF00462 Glutaredoxin AL538_16285 PF00465 Iron-containing alcohol dehydrogenase AL538_16290 PF01418 Helix-turn-helix domain, rpiR family AL538_16290 PF01380 SIS domain AL538_16295 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL538_16305 PF03956 Lysine exporter LysO AL538_16315 PF04994 TfoX C-terminal domain AL538_16315 PF04993 TfoX N-terminal domain AL538_16330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_16330 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL538_16330 PF00512 His Kinase A (phospho-acceptor) domain AL538_16340 PF00266 Aminotransferase class-V AL538_16350 PF08448 PAS fold AL538_16350 PF05231 MASE1 AL538_16350 PF08447 PAS fold AL538_16350 PF00563 EAL domain AL538_16350 PF00990 Diguanylate cyclase, GGDEF domain AL538_16350 PF13426 PAS domain AL538_16370 PF03466 LysR substrate binding domain AL538_16370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_16375 PF02447 GntP family permease AL538_16380 PF00291 Pyridoxal-phosphate dependent enzyme AL538_16385 PF00005 ABC transporter AL538_16385 PF00664 ABC transporter transmembrane region AL538_16390 PF00664 ABC transporter transmembrane region AL538_16390 PF00005 ABC transporter AL538_16395 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_16405 PF00266 Aminotransferase class-V AL538_16415 PF00990 Diguanylate cyclase, GGDEF domain AL538_16415 PF08448 PAS fold AL538_16420 PF00939 Sodium:sulfate symporter transmembrane region AL538_16425 PF02698 DUF218 domain AL538_16430 PF03949 Malic enzyme, NAD binding domain AL538_16430 PF00390 Malic enzyme, N-terminal domain AL538_16435 PF00271 Helicase conserved C-terminal domain AL538_16435 PF00270 DEAD/DEAH box helicase AL538_16435 PF08482 ATP-dependent helicase C-terminal AL538_16435 PF04408 Helicase associated domain (HA2) AL538_16445 PF09423 PhoD-like phosphatase AL538_16445 PF16655 PhoD-like phosphatase, N-terminal domain AL538_16475 PF00939 Sodium:sulfate symporter transmembrane region AL538_16480 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL538_16480 PF00512 His Kinase A (phospho-acceptor) domain AL538_16480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_16485 PF02954 Bacterial regulatory protein, Fis family AL538_16485 PF00072 Response regulator receiver domain AL538_16485 PF00158 Sigma-54 interaction domain AL538_16490 PF00990 Diguanylate cyclase, GGDEF domain AL538_16490 PF03707 Bacterial signalling protein N terminal repeat AL538_16490 PF00563 EAL domain AL538_16495 PF11871 Domain of unknown function (DUF3391) AL538_16495 PF01966 HD domain AL538_16500 PF01810 LysE type translocator AL538_16505 PF11230 Protein of unknown function (DUF3029) AL538_16510 PF04055 Radical SAM superfamily AL538_16515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_16515 PF03466 LysR substrate binding domain AL538_16520 PF03741 Integral membrane protein TerC family AL538_16530 PF01966 HD domain AL538_16535 PF00106 short chain dehydrogenase AL538_16540 PF17158 Membrane-associated sensor, integral membrane domain AL538_16540 PF00990 Diguanylate cyclase, GGDEF domain AL538_16550 PF00465 Iron-containing alcohol dehydrogenase AL538_16555 PF03222 Tryptophan/tyrosine permease family AL538_16570 PF00005 ABC transporter AL538_16575 PF01497 Periplasmic binding protein AL538_16580 PF01032 FecCD transport family AL538_16585 PF07715 TonB-dependent Receptor Plug Domain AL538_16585 PF00593 TonB dependent receptor AL538_16600 PF00005 ABC transporter AL538_16600 PF00664 ABC transporter transmembrane region AL538_16605 PF00664 ABC transporter transmembrane region AL538_16605 PF00005 ABC transporter AL538_16610 PF07963 Prokaryotic N-terminal methylation motif AL538_16610 PF00114 Pilin (bacterial filament) AL538_16620 PF03466 LysR substrate binding domain AL538_16620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_16630 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL538_16630 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL538_16645 PF00012 Hsp70 protein AL538_16650 PF00012 Hsp70 protein AL538_16660 PF00990 Diguanylate cyclase, GGDEF domain AL538_16690 PF01568 Molydopterin dinucleotide binding domain AL538_16690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL538_16690 PF00384 Molybdopterin oxidoreductase AL538_16695 PF12800 4Fe-4S binding domain AL538_16695 PF13247 4Fe-4S dicluster domain AL538_16700 PF04976 DMSO reductase anchor subunit (DmsC) AL538_16705 PF02613 Nitrate reductase delta subunit AL538_16715 PF02525 Flavodoxin-like fold AL538_16720 PF11898 Domain of unknown function (DUF3418) AL538_16720 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL538_16720 PF00271 Helicase conserved C-terminal domain AL538_16720 PF04408 Helicase associated domain (HA2) AL538_16720 PF00270 DEAD/DEAH box helicase AL538_16750 PF04204 Homoserine O-succinyltransferase AL538_16765 PF00893 Small Multidrug Resistance protein AL538_16770 PF13520 Amino acid permease AL538_16775 PF01810 LysE type translocator AL538_16780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_16780 PF03466 LysR substrate binding domain AL538_16785 PF03279 Bacterial lipid A biosynthesis acyltransferase AL538_16800 PF01047 MarR family AL538_16810 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL538_16815 PF00072 Response regulator receiver domain AL538_16815 PF00196 Bacterial regulatory proteins, luxR family AL538_16850 PF01810 LysE type translocator AL538_16860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_16860 PF00529 HlyD membrane-fusion protein of T1SS AL538_16865 PF00873 AcrB/AcrD/AcrF family AL538_16870 PF16868 NMT1-like family AL538_16875 PF01925 Sulfite exporter TauE/SafE AL538_16880 PF01970 Tripartite tricarboxylate transporter TctA family AL538_16900 PF00583 Acetyltransferase (GNAT) family AL538_16915 PF03793 PASTA domain AL538_16915 PF00069 Protein kinase domain AL538_16950 PF00004 ATPase family associated with various cellular activities (AAA) AL538_16950 PF07724 AAA domain (Cdc48 subfamily) AL538_16950 PF17871 AAA lid domain AL538_16950 PF10431 C-terminal, D2-small domain, of ClpB protein AL538_17005 PF16671 Actin cross-linking domain AL538_17005 PF04717 Type VI secretion system, phage-baseplate injector AL538_17025 PF00285 Citrate synthase, C-terminal domain AL538_17030 PF00694 Aconitase C-terminal domain AL538_17030 PF00330 Aconitase family (aconitate hydratase) AL538_17035 PF04303 PrpF protein AL538_17040 PF13193 AMP-binding enzyme C-terminal domain AL538_17040 PF00501 AMP-binding enzyme AL538_17040 PF16177 Acetyl-coenzyme A synthetase N-terminus AL538_17050 PF00089 Trypsin AL538_17065 PF04055 Radical SAM superfamily AL538_17070 PF06508 Queuosine biosynthesis protein QueC AL538_17075 PF00990 Diguanylate cyclase, GGDEF domain AL538_17075 PF13185 GAF domain AL538_17085 PF05736 OprF membrane domain AL538_17085 PF00691 OmpA family AL538_17105 PF13402 Peptidase M60, enhancin and enhancin-like AL538_17105 PF17291 N-terminal domain of M60-like peptidases AL538_17105 PF13322 Domain of unknown function (DUF4092) AL538_17115 PF02397 Bacterial sugar transferase AL538_17120 PF00535 Glycosyl transferase family 2 AL538_17125 PF00534 Glycosyl transferases group 1 AL538_17125 PF13439 Glycosyltransferase Family 4 AL538_17155 PF13439 Glycosyltransferase Family 4 AL538_17155 PF00534 Glycosyl transferases group 1 AL538_17165 PF00005 ABC transporter AL538_17170 PF00528 Binding-protein-dependent transport system inner membrane component AL538_17175 PF00528 Binding-protein-dependent transport system inner membrane component AL538_17180 PF12849 PBP superfamily domain AL538_17185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_17185 PF02743 Cache domain AL538_17185 PF00512 His Kinase A (phospho-acceptor) domain AL538_17190 PF00072 Response regulator receiver domain AL538_17190 PF01966 HD domain AL538_17195 PF12464 Maltose acetyltransferase AL538_17195 PF14602 Hexapeptide repeat of succinyl-transferase AL538_17200 PF00529 HlyD membrane-fusion protein of T1SS AL538_17205 PF00005 ABC transporter AL538_17205 PF00664 ABC transporter transmembrane region AL538_17215 PF00196 Bacterial regulatory proteins, luxR family AL538_17220 PF00196 Bacterial regulatory proteins, luxR family AL538_17230 PF00672 HAMP domain AL538_17230 PF02743 Cache domain AL538_17230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_17235 PF17863 AAA lid domain AL538_17235 PF07726 ATPase family associated with various cellular activities (AAA) AL538_17240 PF01882 Protein of unknown function DUF58 AL538_17250 PF13519 von Willebrand factor type A domain AL538_17255 PF13519 von Willebrand factor type A domain AL538_17270 PF00005 ABC transporter AL538_17275 PF00528 Binding-protein-dependent transport system inner membrane component AL538_17280 PF00528 Binding-protein-dependent transport system inner membrane component AL538_17285 PF12849 PBP superfamily domain AL538_17290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_17290 PF00672 HAMP domain AL538_17290 PF02743 Cache domain AL538_17310 PF07715 TonB-dependent Receptor Plug Domain AL538_17310 PF00593 TonB dependent receptor AL538_17315 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL538_17315 PF00326 Prolyl oligopeptidase family AL538_17325 PF00271 Helicase conserved C-terminal domain AL538_17325 PF00270 DEAD/DEAH box helicase AL538_17335 PF17969 L,D-transpeptidase C-terminal domain AL538_17335 PF01476 LysM domain AL538_17335 PF03734 L,D-transpeptidase catalytic domain AL538_17340 PF03441 FAD binding domain of DNA photolyase AL538_17340 PF00875 DNA photolyase AL538_17345 PF13411 MerR HTH family regulatory protein AL538_17350 PF08349 Protein of unknown function (DUF1722) AL538_17355 PF01048 Phosphorylase superfamily AL538_17370 PF00990 Diguanylate cyclase, GGDEF domain AL538_17380 PF11742 Protein of unknown function (DUF3302) AL538_17385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_17385 PF00529 HlyD membrane-fusion protein of T1SS AL538_17390 PF07155 ECF-type riboflavin transporter, S component AL538_17395 PF00005 ABC transporter AL538_17395 PF12558 ATP-binding cassette cobalt transporter AL538_17410 PF01022 Bacterial regulatory protein, arsR family AL538_17415 PF12837 4Fe-4S binding domain AL538_17415 PF12801 4Fe-4S binding domain AL538_17420 PF12800 4Fe-4S binding domain AL538_17420 PF12838 4Fe-4S dicluster domain AL538_17440 PF07238 PilZ domain AL538_17440 PF12945 Flagellar protein YcgR AL538_17445 PF12729 Four helix bundle sensory module for signal transduction AL538_17445 PF00672 HAMP domain AL538_17445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_17450 PF12729 Four helix bundle sensory module for signal transduction AL538_17450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_17450 PF00672 HAMP domain AL538_17455 PF13654 AAA domain AL538_17455 PF05362 Lon protease (S16) C-terminal proteolytic domain AL538_17465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_17465 PF00005 ABC transporter AL538_17470 PF00326 Prolyl oligopeptidase family AL538_17470 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL538_17475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_17475 PF03466 LysR substrate binding domain AL538_17480 PF02652 L-lactate permease AL538_17485 PF01070 FMN-dependent dehydrogenase AL538_17495 PF00924 Mechanosensitive ion channel AL538_17500 PF03466 LysR substrate binding domain AL538_17500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_17510 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AL538_17510 PF13378 Enolase C-terminal domain-like AL538_17515 PF00009 Elongation factor Tu GTP binding domain AL538_17515 PF03764 Elongation factor G, domain IV AL538_17515 PF14492 Elongation Factor G, domain II AL538_17515 PF00679 Elongation factor G C-terminus AL538_17515 PF03144 Elongation factor Tu domain 2 AL538_17535 PF02001 Protein of unknown function DUF134 AL538_17545 PF00528 Binding-protein-dependent transport system inner membrane component AL538_17550 PF00005 ABC transporter AL538_17550 PF00571 CBS domain AL538_17565 PF01048 Phosphorylase superfamily AL538_17570 PF00582 Universal stress protein family AL538_17575 PF03466 LysR substrate binding domain AL538_17575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_17600 PF06942 GlpM protein AL538_17615 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL538_17615 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL538_17625 PF00857 Isochorismatase family AL538_17630 PF00080 Copper/zinc superoxide dismutase (SODC) AL538_17640 PF00199 Catalase AL538_17640 PF06628 Catalase-related immune-responsive AL538_17660 PF01238 Phosphomannose isomerase type I AL538_17665 PF00155 Aminotransferase class I and II AL538_17670 PF02378 Phosphotransferase system, EIIC AL538_17670 PF00367 phosphotransferase system, EIIB AL538_17675 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL538_17675 PF00356 Bacterial regulatory proteins, lacI family AL538_17680 PF00455 DeoR C terminal sensor domain AL538_17680 PF08220 DeoR-like helix-turn-helix domain AL538_17685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL538_17690 PF01641 SelR domain AL538_17690 PF01625 Peptide methionine sulfoxide reductase AL538_17700 PF02378 Phosphotransferase system, EIIC AL538_17700 PF00367 phosphotransferase system, EIIB AL538_17705 PF01546 Peptidase family M20/M25/M40 AL538_17710 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL538_17715 PF00456 Transketolase, thiamine diphosphate binding domain AL538_17715 PF02780 Transketolase, C-terminal domain AL538_17715 PF02779 Transketolase, pyrimidine binding domain AL538_17720 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL538_17725 PF13419 Haloacid dehalogenase-like hydrolase AL538_17730 PF00465 Iron-containing alcohol dehydrogenase AL538_17745 PF08220 DeoR-like helix-turn-helix domain AL538_17745 PF00455 DeoR C terminal sensor domain AL538_17760 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL538_17760 PF07971 Glycosyl hydrolase family 92 AL538_17765 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL538_17765 PF07971 Glycosyl hydrolase family 92 AL538_17775 PF07971 Glycosyl hydrolase family 92 AL538_17775 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL538_17780 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL538_17780 PF07971 Glycosyl hydrolase family 92 AL538_17790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_17790 PF03466 LysR substrate binding domain AL538_17795 PF01810 LysE type translocator AL538_17800 PF00581 Rhodanese-like domain AL538_17815 PF00440 Bacterial regulatory proteins, tetR family AL538_17815 PF13977 BetI-type transcriptional repressor, C-terminal AL538_17820 PF03466 LysR substrate binding domain AL538_17820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_17840 PF13409 Glutathione S-transferase, N-terminal domain AL538_17845 PF03358 NADPH-dependent FMN reductase AL538_17850 PF03466 LysR substrate binding domain AL538_17850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_17855 PF09905 DNA-binding protein VF530 AL538_17860 PF00005 ABC transporter AL538_17860 PF12848 ABC transporter AL538_17875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL538_17880 PF02567 Phenazine biosynthesis-like protein AL538_17895 PF05114 Protein of unknown function (DUF692) AL538_17910 PF01654 Cytochrome bd terminal oxidase subunit I AL538_17915 PF02322 Cytochrome bd terminal oxidase subunit II AL538_17930 PF00293 NUDIX domain AL538_17930 PF13344 Haloacid dehalogenase-like hydrolase AL538_17945 PF00561 alpha/beta hydrolase fold AL538_17950 PF12852 Cupin AL538_17950 PF12833 Helix-turn-helix domain AL538_17955 PF17853 GGDEF-like domain AL538_17955 PF12833 Helix-turn-helix domain AL538_17970 PF04055 Radical SAM superfamily AL538_17975 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL538_17990 PF00512 His Kinase A (phospho-acceptor) domain AL538_17990 PF00672 HAMP domain AL538_17990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_17995 PF00072 Response regulator receiver domain AL538_17995 PF00486 Transcriptional regulatory protein, C terminal AL538_18005 PF00583 Acetyltransferase (GNAT) family AL538_18015 PF07690 Major Facilitator Superfamily AL538_18020 PF03466 LysR substrate binding domain AL538_18020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_18030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_18030 PF03466 LysR substrate binding domain AL538_18035 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL538_18045 PF00892 EamA-like transporter family AL538_18065 PF13533 Biotin-lipoyl like AL538_18075 PF01594 AI-2E family transporter AL538_18080 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL538_18095 PF00175 Oxidoreductase NAD-binding domain AL538_18095 PF00970 Oxidoreductase FAD-binding domain AL538_18105 PF09905 DNA-binding protein VF530 AL538_18110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_18110 PF03466 LysR substrate binding domain AL538_18120 PF00881 Nitroreductase family AL538_18130 PF00686 Starch binding domain AL538_18130 PF00128 Alpha amylase, catalytic domain AL538_18135 PF07943 Penicillin-binding protein 5, C-terminal domain AL538_18135 PF00768 D-alanyl-D-alanine carboxypeptidase AL538_18140 PF00561 alpha/beta hydrolase fold AL538_18165 PF00268 Ribonucleotide reductase, small chain AL538_18170 PF00317 Ribonucleotide reductase, all-alpha domain AL538_18170 PF02867 Ribonucleotide reductase, barrel domain AL538_18170 PF03477 ATP cone domain AL538_18185 PF00875 DNA photolyase AL538_18185 PF03441 FAD binding domain of DNA photolyase AL538_18190 PF02469 Fasciclin domain AL538_18200 PF01734 Patatin-like phospholipase AL538_18205 PF01914 MarC family integral membrane protein AL538_18210 PF00881 Nitroreductase family AL538_18215 PF10531 SLBB domain AL538_18215 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL538_18215 PF02563 Polysaccharide biosynthesis/export protein AL538_18220 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL538_18225 PF13614 AAA domain AL538_18225 PF02706 Chain length determinant protein AL538_18225 PF13807 G-rich domain on putative tyrosine kinase AL538_18235 PF08803 Putative mono-oxygenase ydhR AL538_18240 PF03466 LysR substrate binding domain AL538_18240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_18270 PF00375 Sodium:dicarboxylate symporter family AL538_18285 PF06803 Protein of unknown function (DUF1232) AL538_18290 PF01546 Peptidase family M20/M25/M40 AL538_18290 PF07687 Peptidase dimerisation domain AL538_18295 PF07670 Nucleoside recognition AL538_18300 PF07670 Nucleoside recognition AL538_18315 PF00128 Alpha amylase, catalytic domain AL538_18320 PF00912 Transglycosylase AL538_18325 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL538_18325 PF02806 Alpha amylase, C-terminal all-beta domain AL538_18325 PF00128 Alpha amylase, catalytic domain AL538_18330 PF02446 4-alpha-glucanotransferase AL538_18335 PF00343 Carbohydrate phosphorylase AL538_18340 PF00196 Bacterial regulatory proteins, luxR family AL538_18340 PF17874 MalT-like TPR region AL538_18355 PF02630 SCO1/SenC AL538_18365 PF00367 phosphotransferase system, EIIB AL538_18365 PF02378 Phosphotransferase system, EIIC AL538_18370 PF03193 RsgA GTPase AL538_18375 PF00375 Sodium:dicarboxylate symporter family AL538_18380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL538_18380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL538_18395 PF01116 Fructose-bisphosphate aldolase class-II AL538_18405 PF00294 pfkB family carbohydrate kinase AL538_18410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL538_18410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL538_18415 PF00205 Thiamine pyrophosphate enzyme, central domain AL538_18415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL538_18415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL538_18420 PF01261 Xylose isomerase-like TIM barrel AL538_18425 PF00083 Sugar (and other) transporter AL538_18430 PF03466 LysR substrate binding domain AL538_18430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_18440 PF01261 Xylose isomerase-like TIM barrel AL538_18445 PF00108 Thiolase, N-terminal domain AL538_18445 PF02803 Thiolase, C-terminal domain AL538_18450 PF01144 Coenzyme A transferase AL538_18455 PF01144 Coenzyme A transferase AL538_18465 PF08543 Phosphomethylpyrimidine kinase AL538_18475 PF13520 Amino acid permease AL538_18480 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL538_18480 PF01276 Orn/Lys/Arg decarboxylase, major domain AL538_18480 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL538_18495 PF17967 Pullulanase N2 domain AL538_18495 PF18494 Pullulanase Ins domain AL538_18495 PF03714 Bacterial pullanase-associated domain AL538_18495 PF11852 Domain of unknown function (DUF3372) AL538_18495 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL538_18500 PF02595 Glycerate kinase family AL538_18505 PF17853 GGDEF-like domain AL538_18505 PF05651 Putative sugar diacid recognition AL538_18505 PF13556 PucR C-terminal helix-turn-helix domain AL538_18510 PF01979 Amidohydrolase family AL538_18535 PF13419 Haloacid dehalogenase-like hydrolase AL538_18555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_18555 PF03466 LysR substrate binding domain AL538_18585 PF00664 ABC transporter transmembrane region AL538_18585 PF00005 ABC transporter AL538_18590 PF00005 ABC transporter AL538_18590 PF00664 ABC transporter transmembrane region AL538_18595 PF07715 TonB-dependent Receptor Plug Domain AL538_18595 PF00593 TonB dependent receptor AL538_18605 PF12833 Helix-turn-helix domain AL538_18610 PF03974 Ecotin AL538_18620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL538_18635 PF01204 Trehalase AL538_18645 PF12706 Beta-lactamase superfamily domain AL538_18655 PF07690 Major Facilitator Superfamily AL538_18660 PF13533 Biotin-lipoyl like AL538_18670 PF16868 NMT1-like family AL538_18675 PF03922 OmpW family AL538_18680 PF13599 Pentapeptide repeats (9 copies) AL538_18705 PF00893 Small Multidrug Resistance protein AL538_18715 PF18416 N-acetylglucosamine binding protein domain 2 AL538_18715 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL538_18720 PF01037 Lrp/AsnC ligand binding domain AL538_18725 PF01810 LysE type translocator AL538_18730 PF00326 Prolyl oligopeptidase family AL538_18735 PF04954 Siderophore-interacting protein AL538_18735 PF08021 Siderophore-interacting FAD-binding domain AL538_18740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_18740 PF03466 LysR substrate binding domain AL538_18750 PF00797 N-acetyltransferase AL538_18755 PF08240 Alcohol dehydrogenase GroES-like domain AL538_18755 PF00107 Zinc-binding dehydrogenase AL538_18760 PF00756 Putative esterase AL538_18770 PF05656 Protein of unknown function (DUF805) AL538_18780 PF17152 Periplasmic sensor domain AL538_18780 PF00990 Diguanylate cyclase, GGDEF domain AL538_18800 PF00849 RNA pseudouridylate synthase AL538_18805 PF01554 MatE AL538_18810 PF00356 Bacterial regulatory proteins, lacI family AL538_18815 PF17912 MalK OB fold domain AL538_18815 PF00005 ABC transporter AL538_18820 PF00232 Glycosyl hydrolase family 1 AL538_18825 PF00528 Binding-protein-dependent transport system inner membrane component AL538_18830 PF00528 Binding-protein-dependent transport system inner membrane component AL538_18840 PF00356 Bacterial regulatory proteins, lacI family AL538_18845 PF02264 LamB porin AL538_18850 PF00990 Diguanylate cyclase, GGDEF domain AL538_18850 PF00563 EAL domain AL538_18860 PF06865 Pyrimidine/purine nucleoside phosphorylase AL538_18870 PF00704 Glycosyl hydrolases family 18 AL538_18870 PF08329 Chitinase A, N-terminal domain AL538_18890 PF03600 Citrate transporter AL538_18910 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL538_18930 PF01116 Fructose-bisphosphate aldolase class-II AL538_18935 PF01979 Amidohydrolase family AL538_18940 PF03610 PTS system fructose IIA component AL538_18945 PF03613 PTS system mannose/fructose/sorbose family IID component AL538_18950 PF03609 PTS system sorbose-specific iic component AL538_18955 PF03830 PTS system sorbose subfamily IIB component AL538_18960 PF01380 SIS domain AL538_18965 PF08013 Tagatose 6 phosphate kinase AL538_18970 PF00455 DeoR C terminal sensor domain AL538_18970 PF08220 DeoR-like helix-turn-helix domain AL538_18975 PF00455 DeoR C terminal sensor domain AL538_18975 PF08220 DeoR-like helix-turn-helix domain AL538_18985 PF00005 ABC transporter AL538_19020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL538_19020 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL538_19025 PF00730 HhH-GPD superfamily base excision DNA repair protein AL538_19025 PF06029 AlkA N-terminal domain AL538_19035 PF07681 DoxX AL538_19040 PF03466 LysR substrate binding domain AL538_19040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_19055 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL538_19070 PF01261 Xylose isomerase-like TIM barrel AL538_19075 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL538_19085 PF00596 Class II Aldolase and Adducin N-terminal domain AL538_19090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL538_19095 PF03611 PTS system sugar-specific permease component AL538_19100 PF00455 DeoR C terminal sensor domain AL538_19100 PF08220 DeoR-like helix-turn-helix domain AL538_19110 PF00194 Eukaryotic-type carbonic anhydrase AL538_19120 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL538_19125 PF12833 Helix-turn-helix domain AL538_19130 PF01272 Transcription elongation factor, GreA/GreB, C-term AL538_19130 PF14760 Rnk N-terminus AL538_19135 PF01042 Endoribonuclease L-PSP AL538_19155 PF01032 FecCD transport family AL538_19165 PF00005 ABC transporter AL538_19170 PF12833 Helix-turn-helix domain AL538_19180 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL538_19225 PF02386 Cation transport protein AL538_19230 PF12833 Helix-turn-helix domain AL538_19250 PF03616 Sodium/glutamate symporter AL538_19255 PF00155 Aminotransferase class I and II AL538_19255 PF00392 Bacterial regulatory proteins, gntR family AL538_19260 PF00005 ABC transporter AL538_19275 PF03616 Sodium/glutamate symporter AL538_19280 PF00132 Bacterial transferase hexapeptide (six repeats) AL538_19295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_19295 PF17200 Single Cache domain 2 AL538_19295 PF00672 HAMP domain AL538_19300 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL538_19305 PF04397 LytTr DNA-binding domain AL538_19305 PF00072 Response regulator receiver domain AL538_19310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_19310 PF06580 Histidine kinase AL538_19310 PF07694 5TMR of 5TMR-LYT AL538_19310 PF13492 GAF domain AL538_19330 PF00005 ABC transporter AL538_19340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_19340 PF03466 LysR substrate binding domain AL538_19345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_19360 PF01098 Cell cycle protein AL538_19365 PF01709 Transcriptional regulator AL538_19375 PF00672 HAMP domain AL538_19375 PF17149 Periplasmic sensor domain found in signal transduction proteins AL538_19375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_19375 PF00072 Response regulator receiver domain AL538_19375 PF00512 His Kinase A (phospho-acceptor) domain AL538_19375 PF01627 Hpt domain AL538_19400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_19400 PF00005 ABC transporter AL538_19405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL538_19405 PF00005 ABC transporter AL538_19420 PF13614 AAA domain AL538_19420 PF18607 ParA helix turn helix domain AL538_19425 PF08775 ParB family AL538_19425 PF02195 ParB-like nuclease domain AL538_19430 PF05127 Helicase AL538_19430 PF13718 GNAT acetyltransferase 2 AL538_19435 PF03544 Gram-negative bacterial TonB protein C-terminal AL538_19440 PF02472 Biopolymer transport protein ExbD/TolR AL538_19445 PF01618 MotA/TolQ/ExbB proton channel family AL538_19480 PF08281 Sigma-70, region 4 AL538_19480 PF04542 Sigma-70 region 2 AL538_19490 PF00132 Bacterial transferase hexapeptide (six repeats) AL538_19495 PF03466 LysR substrate binding domain AL538_19495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_19505 PF00246 Zinc carboxypeptidase AL538_19510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL538_19515 PF03358 NADPH-dependent FMN reductase AL538_19525 PF00664 ABC transporter transmembrane region AL538_19525 PF00005 ABC transporter AL538_19525 PF03412 Peptidase C39 family AL538_19540 PF00529 HlyD membrane-fusion protein of T1SS AL538_19545 PF02954 Bacterial regulatory protein, Fis family AL538_19545 PF00158 Sigma-54 interaction domain AL538_19545 PF00072 Response regulator receiver domain AL538_19550 PF02743 Cache domain AL538_19550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_19550 PF00512 His Kinase A (phospho-acceptor) domain AL538_19555 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL538_19555 PF01243 Pyridoxamine 5'-phosphate oxidase AL538_19565 PF12833 Helix-turn-helix domain AL538_19570 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL538_19570 PF14850 DNA-binding domain of Proline dehydrogenase AL538_19570 PF00171 Aldehyde dehydrogenase family AL538_19570 PF01619 Proline dehydrogenase AL538_19580 PF00474 Sodium:solute symporter family AL538_19620 PF01037 Lrp/AsnC ligand binding domain AL538_19630 PF00005 ABC transporter AL538_19630 PF00664 ABC transporter transmembrane region AL538_19645 PF00571 CBS domain AL538_19645 PF00478 IMP dehydrogenase / GMP reductase domain AL538_19655 PF13186 Iron-sulfur cluster-binding domain AL538_19655 PF04055 Radical SAM superfamily AL538_19665 PF07470 Glycosyl Hydrolase Family 88 AL538_19670 PF00474 Sodium:solute symporter family AL538_19675 PF04962 KduI/IolB family AL538_19685 PF00294 pfkB family carbohydrate kinase AL538_19690 PF01081 KDPG and KHG aldolase AL538_19705 PF16347 Domain of unknown function (DUF4976) AL538_19705 PF00884 Sulfatase AL538_19710 PF02656 Domain of unknown function (DUF202) AL538_19725 PF01042 Endoribonuclease L-PSP AL538_19730 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL538_19730 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL538_19735 PF04371 Porphyromonas-type peptidyl-arginine deiminase AL538_19740 PF13520 Amino acid permease AL538_19745 PF00696 Amino acid kinase family AL538_19750 PF00440 Bacterial regulatory proteins, tetR family AL538_19755 PF10688 Bacterial inner membrane protein AL538_19760 PF01081 KDPG and KHG aldolase AL538_19765 PF00294 pfkB family carbohydrate kinase AL538_19770 PF02614 Glucuronate isomerase AL538_19775 PF08125 Mannitol dehydrogenase C-terminal domain AL538_19775 PF01232 Mannitol dehydrogenase Rossmann domain AL538_19780 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL538_19785 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL538_19790 PF03480 Bacterial extracellular solute-binding protein, family 7 AL538_19795 PF07729 FCD domain AL538_19795 PF00392 Bacterial regulatory proteins, gntR family AL538_19800 PF03786 D-mannonate dehydratase (UxuA) AL538_19805 PF13443 Cro/C1-type HTH DNA-binding domain AL538_19820 PF00155 Aminotransferase class I and II AL538_19825 PF04542 Sigma-70 region 2 AL538_19825 PF08281 Sigma-70, region 4 AL538_19830 PF03466 LysR substrate binding domain AL538_19830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_19845 PF00270 DEAD/DEAH box helicase AL538_19845 PF00271 Helicase conserved C-terminal domain AL538_19850 PF06629 MltA-interacting protein MipA AL538_19860 PF13673 Acetyltransferase (GNAT) domain AL538_19865 PF03473 MOSC domain AL538_19865 PF03475 3-alpha domain AL538_19880 PF01037 Lrp/AsnC ligand binding domain AL538_19880 PF13404 AsnC-type helix-turn-helix domain AL538_19885 PF01810 LysE type translocator AL538_19890 PF06445 GyrI-like small molecule binding domain AL538_19900 PF02743 Cache domain AL538_19900 PF00672 HAMP domain AL538_19900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_19905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL538_19930 PF07148 Maltose operon periplasmic protein precursor (MalM) AL538_19940 PF01547 Bacterial extracellular solute-binding protein AL538_19945 PF16657 Maltogenic Amylase, C-terminal domain AL538_19945 PF02903 Alpha amylase, N-terminal ig-like domain AL538_19945 PF00128 Alpha amylase, catalytic domain AL538_19950 PF16657 Maltogenic Amylase, C-terminal domain AL538_19950 PF00128 Alpha amylase, catalytic domain AL538_19955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_19955 PF03466 LysR substrate binding domain AL538_19980 PF13192 Thioredoxin domain AL538_19980 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_19985 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL538_19985 PF00578 AhpC/TSA family AL538_19990 PF01047 MarR family AL538_19995 PF02566 OsmC-like protein AL538_20010 PF17200 Single Cache domain 2 AL538_20010 PF00672 HAMP domain AL538_20010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_20015 PF05193 Peptidase M16 inactive domain AL538_20015 PF00675 Insulinase (Peptidase family M16) AL538_20040 PF01551 Peptidase family M23 AL538_20040 PF04225 Opacity-associated protein A LysM-like domain AL538_20050 PF13533 Biotin-lipoyl like AL538_20060 PF08360 QacR-like protein, C-terminal region AL538_20060 PF00440 Bacterial regulatory proteins, tetR family AL538_20065 PF00005 ABC transporter AL538_20070 PF01032 FecCD transport family AL538_20075 PF01032 FecCD transport family AL538_20080 PF01497 Periplasmic binding protein AL538_20085 PF03466 LysR substrate binding domain AL538_20085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_20090 PF00593 TonB dependent receptor AL538_20090 PF07715 TonB-dependent Receptor Plug Domain AL538_20095 PF00892 EamA-like transporter family AL538_20110 PF07690 Major Facilitator Superfamily AL538_20140 PF17179 4Fe-4S dicluster domain AL538_20145 PF10414 Sirohaem synthase dimerisation region AL538_20145 PF14824 Sirohaem biosynthesis protein central AL538_20145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL538_20150 PF00990 Diguanylate cyclase, GGDEF domain AL538_20155 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL538_20155 PF00128 Alpha amylase, catalytic domain AL538_20160 PF02264 LamB porin AL538_20175 PF02903 Alpha amylase, N-terminal ig-like domain AL538_20175 PF00128 Alpha amylase, catalytic domain AL538_20180 PF04231 Endonuclease I AL538_20185 PF00392 Bacterial regulatory proteins, gntR family AL538_20185 PF00155 Aminotransferase class I and II AL538_20230 PF00583 Acetyltransferase (GNAT) family AL538_20260 PF03264 NapC/NirT cytochrome c family, N-terminal region AL538_20265 PF01568 Molydopterin dinucleotide binding domain AL538_20265 PF18364 Molybdopterin oxidoreductase N-terminal domain AL538_20265 PF00384 Molybdopterin oxidoreductase AL538_20270 PF01569 PAP2 superfamily AL538_20275 PF02581 Thiamine monophosphate synthase AL538_20280 PF02110 Hydroxyethylthiazole kinase family AL538_20285 PF03070 TENA/THI-4/PQQC family AL538_20290 PF09084 NMT1/THI5 like AL538_20295 PF00528 Binding-protein-dependent transport system inner membrane component AL538_20300 PF00005 ABC transporter AL538_20305 PF08543 Phosphomethylpyrimidine kinase AL538_20310 PF01523 Putative modulator of DNA gyrase AL538_20315 PF01523 Putative modulator of DNA gyrase AL538_20320 PF04013 Putative SAM-dependent RNA methyltransferase AL538_20425 PF00271 Helicase conserved C-terminal domain AL538_20430 PF10928 Protein of unknown function (DUF2810) AL538_20435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL538_20435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL538_20445 PF03009 Glycerophosphoryl diester phosphodiesterase family AL538_20455 PF00486 Transcriptional regulatory protein, C terminal AL538_20455 PF00072 Response regulator receiver domain AL538_20460 PF00672 HAMP domain AL538_20460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_20460 PF00512 His Kinase A (phospho-acceptor) domain AL538_20460 PF16750 Sensor domain of 2-component histidine kinase AL538_20465 PF00593 TonB dependent receptor AL538_20465 PF07715 TonB-dependent Receptor Plug Domain AL538_20475 PF01618 MotA/TolQ/ExbB proton channel family AL538_20480 PF01618 MotA/TolQ/ExbB proton channel family AL538_20485 PF02472 Biopolymer transport protein ExbD/TolR AL538_20530 PF01297 Zinc-uptake complex component A periplasmic AL538_20535 PF00005 ABC transporter AL538_20540 PF00950 ABC 3 transport family AL538_20555 PF00326 Prolyl oligopeptidase family AL538_20555 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL538_20560 PF07690 Major Facilitator Superfamily AL538_20565 PF00491 Arginase family AL538_20570 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL538_20570 PF17810 Arginine decarboxylase helical bundle domain AL538_20570 PF17944 Arginine decarboxylase C-terminal helical extension AL538_20575 PF00753 Metallo-beta-lactamase superfamily AL538_20580 PF18030 RimK PreATP-grasp domain AL538_20580 PF08443 RimK-like ATP-grasp domain AL538_20585 PF08443 RimK-like ATP-grasp domain AL538_20585 PF18030 RimK PreATP-grasp domain AL538_20600 PF12706 Beta-lactamase superfamily domain AL538_20610 PF03466 LysR substrate binding domain AL538_20610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_20635 PF00232 Glycosyl hydrolase family 1 AL538_20640 PF00512 His Kinase A (phospho-acceptor) domain AL538_20640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_20640 PF02743 Cache domain AL538_20645 PF02954 Bacterial regulatory protein, Fis family AL538_20645 PF00072 Response regulator receiver domain AL538_20645 PF00158 Sigma-54 interaction domain AL538_20650 PF05525 Branched-chain amino acid transport protein AL538_20670 PF01266 FAD dependent oxidoreductase AL538_20680 PF03116 NQR2, RnfD, RnfE family AL538_20685 PF01212 Beta-eliminating lyase AL538_20700 PF01773 Na+ dependent nucleoside transporter N-terminus AL538_20700 PF07662 Na+ dependent nucleoside transporter C-terminus AL538_20700 PF07670 Nucleoside recognition AL538_20705 PF00483 Nucleotidyl transferase AL538_20725 PF00990 Diguanylate cyclase, GGDEF domain AL538_20725 PF05230 MASE2 domain AL538_20740 PF00990 Diguanylate cyclase, GGDEF domain AL538_20745 PF00875 DNA photolyase AL538_20745 PF03441 FAD binding domain of DNA photolyase AL538_20750 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AL538_20760 PF01641 SelR domain AL538_20760 PF01625 Peptide methionine sulfoxide reductase AL538_20765 PF02566 OsmC-like protein AL538_20770 PF12464 Maltose acetyltransferase AL538_20770 PF14602 Hexapeptide repeat of succinyl-transferase AL538_20810 PF03466 LysR substrate binding domain AL538_20810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_20815 PF13419 Haloacid dehalogenase-like hydrolase AL538_20850 PF00657 GDSL-like Lipase/Acylhydrolase AL538_20865 PF03611 PTS system sugar-specific permease component AL538_20875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL538_20880 PF00356 Bacterial regulatory proteins, lacI family AL538_20885 PF13419 Haloacid dehalogenase-like hydrolase AL538_20895 PF00266 Aminotransferase class-V AL538_20905 PF00005 ABC transporter AL538_20910 PF00528 Binding-protein-dependent transport system inner membrane component AL538_20915 PF00392 Bacterial regulatory proteins, gntR family AL538_20915 PF07702 UTRA domain AL538_20930 PF04393 Protein of unknown function (DUF535) AL538_20940 PF01266 FAD dependent oxidoreductase AL538_20945 PF00246 Zinc carboxypeptidase AL538_20945 PF18027 Cytosolic carboxypeptidase N-terminal domain AL538_20950 PF00691 OmpA family AL538_20950 PF01389 OmpA-like transmembrane domain AL538_20955 PF03466 LysR substrate binding domain AL538_20955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_20965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_20965 PF03466 LysR substrate binding domain AL538_20975 PF01566 Natural resistance-associated macrophage protein AL538_20980 PF00854 POT family AL538_20985 PF03315 Serine dehydratase beta chain AL538_20985 PF03313 Serine dehydratase alpha chain AL538_21010 PF01464 Transglycosylase SLT domain AL538_21010 PF01476 LysM domain AL538_21030 PF00460 Flagella basal body rod protein AL538_21035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL538_21035 PF00460 Flagella basal body rod protein AL538_21040 PF13861 FlgD Tudor-like domain AL538_21040 PF13860 FlgD Ig-like domain AL538_21040 PF03963 Flagellar hook capping protein - N-terminal region AL538_21045 PF00460 Flagella basal body rod protein AL538_21045 PF07559 Flagellar basal body protein FlaE AL538_21045 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL538_21050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL538_21050 PF00460 Flagella basal body rod protein AL538_21055 PF00460 Flagella basal body rod protein AL538_21055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL538_21060 PF02107 Flagellar L-ring protein AL538_21065 PF02119 Flagellar P-ring protein AL538_21070 PF10135 Rod binding protein AL538_21070 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL538_21075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL538_21075 PF00460 Flagella basal body rod protein AL538_21080 PF00669 Bacterial flagellin N-terminal helical region AL538_21100 PF01070 FMN-dependent dehydrogenase AL538_21115 PF03741 Integral membrane protein TerC family AL538_21115 PF03471 Transporter associated domain AL538_21120 PF18500 CadC C-terminal domain 1 AL538_21120 PF00486 Transcriptional regulatory protein, C terminal AL538_21135 PF08241 Methyltransferase domain AL538_21155 PF03239 Iron permease FTR1 family AL538_21160 PF10634 Fe2+ transport protein AL538_21180 PF00005 ABC transporter AL538_21185 PF00578 AhpC/TSA family AL538_21195 PF04205 FMN-binding domain AL538_21235 PF00239 Resolvase, N terminal domain AL538_21235 PF02796 Helix-turn-helix domain of resolvase AL538_21255 PF08000 Bacterial PH domain AL538_21280 PF00691 OmpA family AL538_21280 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL538_21285 PF01618 MotA/TolQ/ExbB proton channel family AL538_21290 PF04545 Sigma-70, region 4 AL538_21290 PF04542 Sigma-70 region 2 AL538_21295 PF03748 Flagellar basal body-associated protein FliL AL538_21310 PF02561 Flagellar protein FliS AL538_21315 PF02465 Flagellar hook-associated protein 2 N-terminus AL538_21315 PF07196 Flagellin hook IN motif AL538_21315 PF07195 Flagellar hook-associated protein 2 C-terminus AL538_21325 PF00700 Bacterial flagellin C-terminal helical region AL538_21325 PF00669 Bacterial flagellin N-terminal helical region AL538_21335 PF00771 FHIPEP family AL538_21340 PF01312 FlhB HrpN YscU SpaS Family AL538_21345 PF01311 Bacterial export proteins, family 1 AL538_21350 PF01313 Bacterial export proteins, family 3 AL538_21355 PF00813 FliP family AL538_21360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL538_21375 PF02954 Bacterial regulatory protein, Fis family AL538_21375 PF00158 Sigma-54 interaction domain AL538_21375 PF00072 Response regulator receiver domain AL538_21380 PF02049 Flagellar hook-basal body complex protein FliE AL538_21385 PF08345 Flagellar M-ring protein C-terminal AL538_21385 PF01514 Secretory protein of YscJ/FliF family AL538_21390 PF14842 FliG N-terminal domain AL538_21390 PF14841 FliG middle domain AL538_21390 PF01706 FliG C-terminal domain AL538_21400 PF18269 T3SS EscN ATPase C-terminal domain AL538_21400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL538_21410 PF05231 MASE1 AL538_21410 PF00563 EAL domain AL538_21420 PF03466 LysR substrate binding domain AL538_21420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_21450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL538_21455 PF03466 LysR substrate binding domain AL538_21455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_21475 PF00072 Response regulator receiver domain AL538_21475 PF00486 Transcriptional regulatory protein, C terminal AL538_21480 PF00072 Response regulator receiver domain AL538_21480 PF13426 PAS domain AL538_21480 PF08448 PAS fold AL538_21480 PF00512 His Kinase A (phospho-acceptor) domain AL538_21480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_21485 PF00266 Aminotransferase class-V AL538_21490 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL538_21495 PF03707 Bacterial signalling protein N terminal repeat AL538_21495 PF00563 EAL domain AL538_21495 PF00990 Diguanylate cyclase, GGDEF domain AL538_21500 PF00155 Aminotransferase class I and II AL538_21505 PF08240 Alcohol dehydrogenase GroES-like domain AL538_21505 PF00107 Zinc-binding dehydrogenase AL538_21535 PF12161 HsdM N-terminal domain AL538_21535 PF02384 N-6 DNA Methylase AL538_21540 PF01420 Type I restriction modification DNA specificity domain AL538_21545 PF01367 5'-3' exonuclease, C-terminal SAM fold AL538_21545 PF00476 DNA polymerase family A AL538_21545 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL538_21560 PF00271 Helicase conserved C-terminal domain AL538_21560 PF00176 SNF2 family N-terminal domain AL538_21580 PF00293 NUDIX domain AL538_21590 PF11008 Protein of unknown function (DUF2846) AL538_21595 PF00194 Eukaryotic-type carbonic anhydrase AL538_21600 PF00376 MerR family regulatory protein AL538_21600 PF09278 MerR, DNA binding AL538_21625 PF13091 PLD-like domain AL538_21630 PF13533 Biotin-lipoyl like AL538_21635 PF00873 AcrB/AcrD/AcrF family AL538_21650 PF00873 AcrB/AcrD/AcrF family AL538_21690 PF13193 AMP-binding enzyme C-terminal domain AL538_21690 PF00501 AMP-binding enzyme AL538_21695 PF02028 BCCT, betaine/carnitine/choline family transporter AL538_21700 PF00703 Glycosyl hydrolases family 2 AL538_21700 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL538_21700 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL538_21700 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AL538_21705 PF00196 Bacterial regulatory proteins, luxR family AL538_21715 PF03707 Bacterial signalling protein N terminal repeat AL538_21715 PF00563 EAL domain AL538_21715 PF00990 Diguanylate cyclase, GGDEF domain AL538_21725 PF03616 Sodium/glutamate symporter AL538_21730 PF02600 Disulfide bond formation protein DsbB AL538_21735 PF02321 Outer membrane efflux protein AL538_21740 PF00873 AcrB/AcrD/AcrF family AL538_21745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_21750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_21750 PF03466 LysR substrate binding domain AL538_21765 PF00579 tRNA synthetases class I (W and Y) AL538_21770 PF00196 Bacterial regulatory proteins, luxR family AL538_21770 PF00072 Response regulator receiver domain AL538_21780 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL538_21780 PF00391 PEP-utilising enzyme, mobile domain AL538_21780 PF02896 PEP-utilising enzyme, TIM barrel domain AL538_21785 PF03618 Kinase/pyrophosphorylase AL538_21790 PF00710 Asparaginase, N-terminal AL538_21790 PF17763 Glutaminase/Asparaginase C-terminal domain AL538_21795 PF00990 Diguanylate cyclase, GGDEF domain AL538_21795 PF00563 EAL domain AL538_21795 PF13185 GAF domain AL538_21805 PF03466 LysR substrate binding domain AL538_21805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_21825 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AL538_21840 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL538_21850 PF07690 Major Facilitator Superfamily AL538_21860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_21860 PF03466 LysR substrate binding domain AL538_21880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_21880 PF03466 LysR substrate binding domain AL538_21890 PF00271 Helicase conserved C-terminal domain AL538_21890 PF00270 DEAD/DEAH box helicase AL538_21900 PF00535 Glycosyl transferase family 2 AL538_21910 PF03099 Biotin/lipoate A/B protein ligase family AL538_21930 PF00155 Aminotransferase class I and II AL538_21935 PF01497 Periplasmic binding protein AL538_21935 PF12833 Helix-turn-helix domain AL538_21940 PF03466 LysR substrate binding domain AL538_21940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_21950 PF13419 Haloacid dehalogenase-like hydrolase AL538_21955 PF00158 Sigma-54 interaction domain AL538_21955 PF01590 GAF domain AL538_21960 PF00301 Rubredoxin AL538_21960 PF00753 Metallo-beta-lactamase superfamily AL538_21960 PF00258 Flavodoxin AL538_21965 PF18113 Rubredoxin binding C-terminal domain AL538_21965 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_21980 PF11742 Protein of unknown function (DUF3302) AL538_21985 PF00529 HlyD membrane-fusion protein of T1SS AL538_21985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_21990 PF03466 LysR substrate binding domain AL538_21990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_22000 PF01238 Phosphomannose isomerase type I AL538_22005 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL538_22005 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL538_22010 PF12833 Helix-turn-helix domain AL538_22020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL538_22030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_22030 PF03466 LysR substrate binding domain AL538_22040 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL538_22040 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL538_22045 PF00199 Catalase AL538_22045 PF06628 Catalase-related immune-responsive AL538_22055 PF00107 Zinc-binding dehydrogenase AL538_22055 PF16884 N-terminal domain of oxidoreductase AL538_22060 PF00440 Bacterial regulatory proteins, tetR family AL538_22060 PF16925 Tetracyclin repressor-like, C-terminal domain AL538_22095 PF13439 Glycosyltransferase Family 4 AL538_22095 PF00534 Glycosyl transferases group 1 AL538_22105 PF13614 AAA domain AL538_22105 PF13807 G-rich domain on putative tyrosine kinase AL538_22105 PF02706 Chain length determinant protein AL538_22120 PF02397 Bacterial sugar transferase AL538_22125 PF08402 TOBE domain AL538_22125 PF00005 ABC transporter AL538_22130 PF01547 Bacterial extracellular solute-binding protein AL538_22135 PF14785 Maltose transport system permease protein MalF P2 domain AL538_22135 PF00528 Binding-protein-dependent transport system inner membrane component AL538_22140 PF00528 Binding-protein-dependent transport system inner membrane component AL538_22185 PF01464 Transglycosylase SLT domain AL538_22185 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL538_22200 PF00072 Response regulator receiver domain AL538_22200 PF12833 Helix-turn-helix domain AL538_22210 PF05661 Protein of unknown function (DUF808) AL538_22215 PF01979 Amidohydrolase family AL538_22220 PF03476 MOSC N-terminal beta barrel domain AL538_22220 PF00111 2Fe-2S iron-sulfur cluster binding domain AL538_22220 PF03473 MOSC domain AL538_22220 PF03473 MOSC domain AL538_22220 PF03476 MOSC N-terminal beta barrel domain AL538_22220 PF00111 2Fe-2S iron-sulfur cluster binding domain AL538_22225 PF02540 NAD synthase AL538_22230 PF01467 Cytidylyltransferase-like AL538_22270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_22270 PF03466 LysR substrate binding domain AL538_22290 PF07690 Major Facilitator Superfamily AL538_22295 PF00857 Isochorismatase family AL538_22300 PF12833 Helix-turn-helix domain AL538_22300 PF01965 DJ-1/PfpI family AL538_22305 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL538_22310 PF08019 Phosphoethanolamine transferase EptA/EptB AL538_22310 PF00884 Sulfatase AL538_22315 PF01219 Prokaryotic diacylglycerol kinase AL538_22325 PF00512 His Kinase A (phospho-acceptor) domain AL538_22325 PF00672 HAMP domain AL538_22325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_22330 PF00072 Response regulator receiver domain AL538_22330 PF00486 Transcriptional regulatory protein, C terminal AL538_22335 PF02028 BCCT, betaine/carnitine/choline family transporter AL538_22340 PF13378 Enolase C-terminal domain-like AL538_22340 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AL538_22345 PF04205 FMN-binding domain AL538_22345 PF00890 FAD binding domain AL538_22350 PF07729 FCD domain AL538_22350 PF00392 Bacterial regulatory proteins, gntR family AL538_22355 PF07963 Prokaryotic N-terminal methylation motif AL538_22355 PF00114 Pilin (bacterial filament) AL538_22360 PF00106 short chain dehydrogenase AL538_22375 PF01323 DSBA-like thioredoxin domain AL538_22390 PF00255 Glutathione peroxidase AL538_22395 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL538_22420 PF01966 HD domain AL538_22435 PF07969 Amidohydrolase family AL538_22440 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AL538_22445 PF01769 Divalent cation transporter AL538_22445 PF00571 CBS domain AL538_22445 PF03448 MgtE intracellular N domain AL538_22450 PF03109 ABC1 family AL538_22455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_22455 PF00529 HlyD membrane-fusion protein of T1SS AL538_22480 PF00486 Transcriptional regulatory protein, C terminal AL538_22480 PF00072 Response regulator receiver domain AL538_22485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_22485 PF00512 His Kinase A (phospho-acceptor) domain AL538_22485 PF00672 HAMP domain AL538_22485 PF16527 Two-component sensor protein CpxA, periplasmic domain AL538_22495 PF00392 Bacterial regulatory proteins, gntR family AL538_22495 PF00155 Aminotransferase class I and II AL538_22500 PF13520 Amino acid permease AL538_22505 PF01037 Lrp/AsnC ligand binding domain AL538_22505 PF13404 AsnC-type helix-turn-helix domain AL538_22515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_22515 PF03466 LysR substrate binding domain AL538_22530 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL538_22530 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL538_22535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_22535 PF01627 Hpt domain AL538_22535 PF00512 His Kinase A (phospho-acceptor) domain AL538_22535 PF00072 Response regulator receiver domain AL538_22535 PF00672 HAMP domain AL538_22535 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL538_22540 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL538_22545 PF01554 MatE AL538_22550 PF04363 Protein of unknown function (DUF496) AL538_22560 PF04337 Protein of unknown function, DUF480 AL538_22565 PF01541 GIY-YIG catalytic domain AL538_22570 PF13407 Periplasmic binding protein domain AL538_22575 PF09308 LuxQ, periplasmic AL538_22575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_22575 PF00072 Response regulator receiver domain AL538_22575 PF00512 His Kinase A (phospho-acceptor) domain AL538_22590 PF01037 Lrp/AsnC ligand binding domain AL538_22615 PF13721 SecD export protein N-terminal TM region AL538_22615 PF07549 SecD/SecF GG Motif AL538_22615 PF02355 Protein export membrane protein AL538_22620 PF02355 Protein export membrane protein AL538_22620 PF07549 SecD/SecF GG Motif AL538_22630 PF01810 LysE type translocator AL538_22635 PF00106 short chain dehydrogenase AL538_22640 PF00108 Thiolase, N-terminal domain AL538_22640 PF02803 Thiolase, C-terminal domain AL538_22650 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL538_22650 PF00561 alpha/beta hydrolase fold AL538_22660 PF03264 NapC/NirT cytochrome c family, N-terminal region AL538_22665 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL538_22670 PF01568 Molydopterin dinucleotide binding domain AL538_22670 PF00384 Molybdopterin oxidoreductase AL538_22670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL538_22680 PF12838 4Fe-4S dicluster domain AL538_22680 PF13187 4Fe-4S dicluster domain AL538_22685 PF00672 HAMP domain AL538_22685 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL538_22685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_22685 PF07730 Histidine kinase AL538_22690 PF00196 Bacterial regulatory proteins, luxR family AL538_22690 PF00072 Response regulator receiver domain AL538_22705 PF07687 Peptidase dimerisation domain AL538_22705 PF01546 Peptidase family M20/M25/M40 AL538_22710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL538_22715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_22720 PF00873 AcrB/AcrD/AcrF family AL538_22725 PF12729 Four helix bundle sensory module for signal transduction AL538_22725 PF00672 HAMP domain AL538_22725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_22730 PF00472 RF-1 domain AL538_22735 PF13419 Haloacid dehalogenase-like hydrolase AL538_22740 PF00072 Response regulator receiver domain AL538_22740 PF00196 Bacterial regulatory proteins, luxR family AL538_22765 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL538_22765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL538_22775 PF00691 OmpA family AL538_22775 PF05736 OprF membrane domain AL538_22795 PF00313 'Cold-shock' DNA-binding domain AL538_22800 PF03889 Alternative ribosome-rescue factor A AL538_22810 PF00990 Diguanylate cyclase, GGDEF domain AL538_22825 PF00005 ABC transporter AL538_22825 PF02687 FtsX-like permease family AL538_22825 PF12704 MacB-like periplasmic core domain AL538_22830 PF00005 ABC transporter AL538_22830 PF02687 FtsX-like permease family AL538_22830 PF12704 MacB-like periplasmic core domain AL538_22840 PF00140 Sigma-70 factor, region 1.2 AL538_22840 PF04539 Sigma-70 region 3 AL538_22840 PF04545 Sigma-70, region 4 AL538_22840 PF04542 Sigma-70 region 2 AL538_22850 PF00005 ABC transporter AL538_22855 PF00005 ABC transporter AL538_22855 PF00664 ABC transporter transmembrane region AL538_22860 PF02321 Outer membrane efflux protein AL538_22865 PF00072 Response regulator receiver domain AL538_22865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_22870 PF13533 Biotin-lipoyl like AL538_22890 PF00672 HAMP domain AL538_22890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_22890 PF17200 Single Cache domain 2 AL538_22895 PF00210 Ferritin-like domain AL538_22905 PF17676 LD-carboxypeptidase C-terminal domain AL538_22905 PF02016 LD-carboxypeptidase N-terminal domain AL538_22910 PF07995 Glucose / Sorbosone dehydrogenase AL538_22915 PF00465 Iron-containing alcohol dehydrogenase AL538_22930 PF00892 EamA-like transporter family AL538_22940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_22940 PF03466 LysR substrate binding domain AL538_22950 PF00501 AMP-binding enzyme AL538_22950 PF13193 AMP-binding enzyme C-terminal domain AL538_22960 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL538_22965 PF01329 Pterin 4 alpha carbinolamine dehydratase AL538_22990 PF12843 Putative quorum-sensing-regulated virulence factor AL538_23025 PF12805 FUSC-like inner membrane protein yccS AL538_23030 PF13361 UvrD-like helicase C-terminal domain AL538_23030 PF12462 DNA helicase IV / RNA helicase N terminal AL538_23030 PF00580 UvrD/REP helicase N-terminal domain AL538_23035 PF02142 MGS-like domain AL538_23040 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL538_23045 PF01627 Hpt domain AL538_23045 PF00072 Response regulator receiver domain AL538_23045 PF00512 His Kinase A (phospho-acceptor) domain AL538_23045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_23045 PF00672 HAMP domain AL538_23065 PF00512 His Kinase A (phospho-acceptor) domain AL538_23065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_23065 PF00672 HAMP domain AL538_23065 PF16750 Sensor domain of 2-component histidine kinase AL538_23070 PF00072 Response regulator receiver domain AL538_23070 PF00486 Transcriptional regulatory protein, C terminal AL538_23075 PF00884 Sulfatase AL538_23080 PF00884 Sulfatase AL538_23090 PF03466 LysR substrate binding domain AL538_23090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_23095 PF00884 Sulfatase AL538_23100 PF04055 Radical SAM superfamily AL538_23100 PF13186 Iron-sulfur cluster-binding domain AL538_23105 PF07726 ATPase family associated with various cellular activities (AAA) AL538_23105 PF17863 AAA lid domain AL538_23120 PF00092 von Willebrand factor type A domain AL538_23140 PF00119 ATP synthase A chain AL538_23145 PF00137 ATP synthase subunit C AL538_23150 PF00430 ATP synthase B/B' CF(0) AL538_23155 PF00213 ATP synthase delta (OSCP) subunit AL538_23160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL538_23160 PF00306 ATP synthase alpha/beta chain, C terminal domain AL538_23160 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL538_23165 PF00231 ATP synthase AL538_23170 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL538_23170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL538_23175 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL538_23175 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL538_23180 PF01872 RibD C-terminal domain AL538_23180 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL538_23185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_23185 PF03466 LysR substrate binding domain AL538_23190 PF00781 Diacylglycerol kinase catalytic domain AL538_23195 PF04076 Bacterial OB fold (BOF) protein AL538_23210 PF03781 Sulfatase-modifying factor enzyme 1 AL538_23215 PF13186 Iron-sulfur cluster-binding domain AL538_23215 PF04055 Radical SAM superfamily AL538_23225 PF18081 Fanconi anemia-associated nuclease SAP domain AL538_23225 PF08774 VRR-NUC domain AL538_23240 PF01435 Peptidase family M48 AL538_23245 PF04011 LemA family AL538_23250 PF03606 C4-dicarboxylate anaerobic carrier AL538_23270 PF00072 Response regulator receiver domain AL538_23270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_23275 PF00155 Aminotransferase class I and II AL538_23280 PF01926 50S ribosome-binding GTPase AL538_23285 PF01476 LysM domain AL538_23285 PF08525 Opacity-associated protein A N-terminal motif AL538_23285 PF01551 Peptidase family M23 AL538_23310 PF00158 Sigma-54 interaction domain AL538_23310 PF02954 Bacterial regulatory protein, Fis family AL538_23310 PF01590 GAF domain AL538_23315 PF10431 C-terminal, D2-small domain, of ClpB protein AL538_23315 PF17871 AAA lid domain AL538_23315 PF07724 AAA domain (Cdc48 subfamily) AL538_23315 PF00004 ATPase family associated with various cellular activities (AAA) AL538_23320 PF05638 Type VI secretion system effector, Hcp AL538_23325 PF04717 Type VI secretion system, phage-baseplate injector AL538_23350 PF00069 Protein kinase domain AL538_23385 PF01037 Lrp/AsnC ligand binding domain AL538_23445 PF13181 Tetratricopeptide repeat AL538_23445 PF17128 Domain of unknown function (DUF5107) AL538_23450 PF00083 Sugar (and other) transporter AL538_23455 PF00480 ROK family AL538_23460 PF01263 Aldose 1-epimerase AL538_23465 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL538_23465 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL538_23470 PF06276 Ferric iron reductase FhuF-like transporter AL538_23470 PF04183 IucA / IucC family AL538_23480 PF06276 Ferric iron reductase FhuF-like transporter AL538_23480 PF04183 IucA / IucC family AL538_23485 PF02655 ATP-grasp domain AL538_23485 PF00206 Lyase AL538_23490 PF00593 TonB dependent receptor AL538_23490 PF07715 TonB-dependent Receptor Plug Domain AL538_23495 PF07715 TonB-dependent Receptor Plug Domain AL538_23495 PF00593 TonB dependent receptor AL538_23495 PF07660 Secretin and TonB N terminus short domain AL538_23500 PF01497 Periplasmic binding protein AL538_23505 PF01032 FecCD transport family AL538_23510 PF01032 FecCD transport family AL538_23515 PF00005 ABC transporter AL538_23520 PF07715 TonB-dependent Receptor Plug Domain AL538_23520 PF00593 TonB dependent receptor AL538_23530 PF03707 Bacterial signalling protein N terminal repeat AL538_23530 PF00990 Diguanylate cyclase, GGDEF domain AL538_23530 PF00563 EAL domain AL538_23535 PF00512 His Kinase A (phospho-acceptor) domain AL538_23535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_23535 PF09456 RcsC Alpha-Beta-Loop (ABL) AL538_23535 PF00072 Response regulator receiver domain AL538_23540 PF00563 EAL domain AL538_23540 PF00990 Diguanylate cyclase, GGDEF domain AL538_23540 PF03707 Bacterial signalling protein N terminal repeat AL538_23540 PF13188 PAS domain AL538_23545 PF00072 Response regulator receiver domain AL538_23545 PF00196 Bacterial regulatory proteins, luxR family AL538_23550 PF00990 Diguanylate cyclase, GGDEF domain AL538_23555 PF03466 LysR substrate binding domain AL538_23555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_23560 PF00072 Response regulator receiver domain AL538_23560 PF00196 Bacterial regulatory proteins, luxR family AL538_23565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_23565 PF00672 HAMP domain AL538_23570 PF00881 Nitroreductase family AL538_23580 PF00072 Response regulator receiver domain AL538_23580 PF01584 CheW-like domain AL538_23585 PF07963 Prokaryotic N-terminal methylation motif AL538_23585 PF08334 Type II secretion system (T2SS), protein G AL538_23595 PF00892 EamA-like transporter family AL538_23610 PF00034 Cytochrome c AL538_23610 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL538_23620 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL538_23625 PF00034 Cytochrome c AL538_23640 PF00682 HMGL-like AL538_23645 PF00378 Enoyl-CoA hydratase/isomerase AL538_23650 PF01039 Carboxyl transferase domain AL538_23655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL538_23655 PF02770 Acyl-CoA dehydrogenase, middle domain AL538_23655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL538_23660 PF09278 MerR, DNA binding AL538_23660 PF00376 MerR family regulatory protein AL538_23665 PF00108 Thiolase, N-terminal domain AL538_23665 PF02803 Thiolase, C-terminal domain AL538_23670 PF00171 Aldehyde dehydrogenase family AL538_23680 PF00378 Enoyl-CoA hydratase/isomerase AL538_23685 PF00378 Enoyl-CoA hydratase/isomerase AL538_23690 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL538_23690 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL538_23700 PF06481 COX Aromatic Rich Motif AL538_23700 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL538_23705 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL538_23710 PF00510 Cytochrome c oxidase subunit III AL538_23715 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AL538_23720 PF01040 UbiA prenyltransferase family AL538_23725 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_23725 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL538_23730 PF01569 PAP2 superfamily AL538_23740 PF00893 Small Multidrug Resistance protein AL538_23745 PF00892 EamA-like transporter family AL538_23765 PF00171 Aldehyde dehydrogenase family AL538_23770 PF00664 ABC transporter transmembrane region AL538_23770 PF00005 ABC transporter AL538_23785 PF01638 HxlR-like helix-turn-helix AL538_23795 PF11490 DNA polymerase III polC-type N-terminus II AL538_23795 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL538_23795 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL538_23795 PF02811 PHP domain AL538_23795 PF00929 Exonuclease AL538_23795 PF14579 Helix-hairpin-helix motif AL538_23860 PF02347 Glycine cleavage system P-protein AL538_23865 PF01597 Glycine cleavage H-protein AL538_23870 PF00464 Serine hydroxymethyltransferase AL538_23880 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL538_23880 PF01571 Aminomethyltransferase folate-binding domain AL538_23890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_23895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_23900 PF00873 AcrB/AcrD/AcrF family AL538_23925 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL538_23925 PF02378 Phosphotransferase system, EIIC AL538_23930 PF00294 pfkB family carbohydrate kinase AL538_23935 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL538_23935 PF00381 PTS HPr component phosphorylation site AL538_23940 PF00356 Bacterial regulatory proteins, lacI family AL538_23940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL538_23955 PF00989 PAS fold AL538_23955 PF00563 EAL domain AL538_23955 PF00990 Diguanylate cyclase, GGDEF domain AL538_23955 PF01590 GAF domain AL538_23960 PF00528 Binding-protein-dependent transport system inner membrane component AL538_23965 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL538_23970 PF00528 Binding-protein-dependent transport system inner membrane component AL538_23975 PF00005 ABC transporter AL538_23985 PF00465 Iron-containing alcohol dehydrogenase AL538_23990 PF12833 Helix-turn-helix domain AL538_23990 PF06719 AraC-type transcriptional regulator N-terminus AL538_23995 PF06483 Chitinase C AL538_23995 PF00704 Glycosyl hydrolases family 18 AL538_24000 PF00483 Nucleotidyl transferase AL538_24005 PF01268 Formate--tetrahydrofolate ligase AL538_24010 PF00294 pfkB family carbohydrate kinase AL538_24025 PF11849 Domain of unknown function (DUF3369) AL538_24030 PF13419 Haloacid dehalogenase-like hydrolase AL538_24035 PF00672 HAMP domain AL538_24035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_24040 PF04336 Acyl carrier protein phosphodiesterase AL538_24045 PF00271 Helicase conserved C-terminal domain AL538_24045 PF00270 DEAD/DEAH box helicase AL538_24050 PF12792 CSS motif domain associated with EAL AL538_24050 PF00563 EAL domain AL538_24065 PF01292 Prokaryotic cytochrome b561 AL538_24070 PF04264 YceI-like domain AL538_24075 PF01226 Formate/nitrite transporter AL538_24080 PF03466 LysR substrate binding domain AL538_24080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_24085 PF06496 Protein of unknown function (DUF1097) AL538_24090 PF11398 Protein of unknown function (DUF2813) AL538_24095 PF02872 5'-nucleotidase, C-terminal domain AL538_24095 PF00149 Calcineurin-like phosphoesterase AL538_24100 PF03741 Integral membrane protein TerC family AL538_24115 PF02310 B12 binding domain AL538_24115 PF02607 B12 binding domain AL538_24115 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL538_24115 PF00809 Pterin binding enzyme AL538_24115 PF02574 Homocysteine S-methyltransferase AL538_24130 PF12262 Bacterial virulence factor lipase N-terminal AL538_24135 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL538_24150 PF03061 Thioesterase superfamily AL538_24160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL538_24160 PF12793 Sugar transport-related sRNA regulator N-term AL538_24185 PF00226 DnaJ domain AL538_24185 PF00684 DnaJ central domain AL538_24185 PF01556 DnaJ C terminal domain AL538_24195 PF00563 EAL domain AL538_24195 PF00990 Diguanylate cyclase, GGDEF domain AL538_24195 PF03707 Bacterial signalling protein N terminal repeat AL538_24195 PF13188 PAS domain AL538_24200 PF07055 Enoyl reductase FAD binding domain AL538_24200 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL538_24200 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL538_24205 PF13472 GDSL-like Lipase/Acylhydrolase family AL538_24210 PF00005 ABC transporter AL538_24225 PF02626 Carboxyltransferase domain, subdomain A and B AL538_24230 PF02682 Carboxyltransferase domain, subdomain C and D AL538_24235 PF03746 LamB/YcsF family AL538_24240 PF08448 PAS fold AL538_24240 PF00563 EAL domain AL538_24240 PF00990 Diguanylate cyclase, GGDEF domain AL538_24240 PF05231 MASE1 AL538_24240 PF08447 PAS fold AL538_24240 PF13426 PAS domain AL538_24245 PF16363 GDP-mannose 4,6 dehydratase AL538_24250 PF00593 TonB dependent receptor AL538_24250 PF04886 PT repeat AL538_24250 PF07715 TonB-dependent Receptor Plug Domain AL538_24255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_24255 PF03466 LysR substrate binding domain AL538_24260 PF00593 TonB dependent receptor AL538_24260 PF07715 TonB-dependent Receptor Plug Domain AL538_24260 PF04886 PT repeat AL538_24265 PF13607 Succinyl-CoA ligase like flavodoxin domain AL538_24265 PF13380 CoA binding domain AL538_24265 PF00583 Acetyltransferase (GNAT) family AL538_24270 PF05036 Sporulation related domain AL538_24275 PF01820 D-ala D-ala ligase N-terminus AL538_24275 PF07478 D-ala D-ala ligase C-terminus AL538_24285 PF01253 Translation initiation factor SUI1 AL538_24325 PF00486 Transcriptional regulatory protein, C terminal AL538_24325 PF00072 Response regulator receiver domain AL538_24335 PF02233 NAD(P) transhydrogenase beta subunit AL538_24340 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL538_24340 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL538_24340 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL538_24355 PF17158 Membrane-associated sensor, integral membrane domain AL538_24355 PF00990 Diguanylate cyclase, GGDEF domain AL538_24370 PF00990 Diguanylate cyclase, GGDEF domain AL538_24370 PF01590 GAF domain AL538_24370 PF00360 Phytochrome region AL538_24370 PF00563 EAL domain AL538_24380 PF00005 ABC transporter AL538_24380 PF03459 TOBE domain AL538_24385 PF00528 Binding-protein-dependent transport system inner membrane component AL538_24395 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL538_24395 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL538_24400 PF04076 Bacterial OB fold (BOF) protein AL538_24410 PF18030 RimK PreATP-grasp domain AL538_24410 PF08443 RimK-like ATP-grasp domain AL538_24415 PF00155 Aminotransferase class I and II AL538_24420 PF12833 Helix-turn-helix domain AL538_24425 PF01554 MatE AL538_24435 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL538_24435 PF03477 ATP cone domain AL538_24450 PF04143 Sulphur transport AL538_24460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL538_24460 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_24490 PF07690 Major Facilitator Superfamily AL538_24495 PF00196 Bacterial regulatory proteins, luxR family AL538_24495 PF00072 Response regulator receiver domain AL538_24500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_24500 PF07730 Histidine kinase AL538_24500 PF05231 MASE1 AL538_24505 PF07690 Major Facilitator Superfamily AL538_24510 PF01238 Phosphomannose isomerase type I AL538_24520 PF01594 AI-2E family transporter AL538_24530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL538_24530 PF00529 HlyD membrane-fusion protein of T1SS AL538_24555 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL538_24555 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL538_24560 PF00085 Thioredoxin AL538_24565 PF07690 Major Facilitator Superfamily AL538_24580 PF11756 Nitrous oxide-stimulated promoter AL538_24595 PF00593 TonB dependent receptor AL538_24595 PF07715 TonB-dependent Receptor Plug Domain AL538_24605 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL538_24620 PF10414 Sirohaem synthase dimerisation region AL538_24620 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL538_24620 PF14824 Sirohaem biosynthesis protein central AL538_24625 PF01226 Formate/nitrite transporter AL538_24630 PF13806 Rieske-like [2Fe-2S] domain AL538_24635 PF04324 BFD-like [2Fe-2S] binding domain AL538_24635 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL538_24635 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL538_24635 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_24635 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL538_24640 PF00563 EAL domain AL538_24640 PF00990 Diguanylate cyclase, GGDEF domain AL538_24640 PF13426 PAS domain AL538_24695 PF09154 Domain of unknown function (DUF1939) AL538_24695 PF00128 Alpha amylase, catalytic domain AL538_24715 PF09330 D-lactate dehydrogenase, membrane binding AL538_24715 PF01565 FAD binding domain AL538_24720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_24720 PF03466 LysR substrate binding domain AL538_24730 PF05762 VWA domain containing CoxE-like protein AL538_24735 PF12592 Protein of unknown function (DUF3763) AL538_24735 PF07728 AAA domain (dynein-related subfamily) AL538_24735 PF17868 AAA lid domain AL538_24745 PF01212 Beta-eliminating lyase AL538_24750 PF00034 Cytochrome c AL538_24755 PF03606 C4-dicarboxylate anaerobic carrier AL538_24765 PF07690 Major Facilitator Superfamily AL538_24775 PF08212 Lipocalin-like domain AL538_24805 PF00704 Glycosyl hydrolases family 18 AL538_24815 PF13476 AAA domain AL538_24820 PF12320 Type 5 capsule protein repressor C-terminal domain AL538_24820 PF00149 Calcineurin-like phosphoesterase AL538_24840 PF03527 RHS protein AL538_24855 PF04717 Type VI secretion system, phage-baseplate injector AL538_24865 PF07724 AAA domain (Cdc48 subfamily) AL538_24865 PF17871 AAA lid domain AL538_24865 PF10431 C-terminal, D2-small domain, of ClpB protein AL538_24865 PF00004 ATPase family associated with various cellular activities (AAA) AL538_24925 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL538_24925 PF00691 OmpA family AL538_24945 PF00069 Protein kinase domain AL538_24945 PF03793 PASTA domain AL538_24970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL538_24975 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL538_24985 PF01757 Acyltransferase family AL538_25000 PF13187 4Fe-4S dicluster domain AL538_25000 PF01645 Conserved region in glutamate synthase AL538_25010 PF00753 Metallo-beta-lactamase superfamily AL538_25015 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL538_25090 PF00990 Diguanylate cyclase, GGDEF domain AL538_25090 PF00072 Response regulator receiver domain AL538_25095 PF00378 Enoyl-CoA hydratase/isomerase AL538_25100 PF01594 AI-2E family transporter AL538_25105 PF14602 Hexapeptide repeat of succinyl-transferase AL538_25105 PF12464 Maltose acetyltransferase AL538_25115 PF02743 Cache domain AL538_25115 PF00672 HAMP domain AL538_25115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_25125 PF01292 Prokaryotic cytochrome b561 AL538_25135 PF08525 Opacity-associated protein A N-terminal motif AL538_25135 PF01551 Peptidase family M23 AL538_25135 PF01476 LysM domain AL538_25140 PF03466 LysR substrate binding domain AL538_25140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_25155 PF00211 Adenylate and Guanylate cyclase catalytic domain AL538_25155 PF00072 Response regulator receiver domain AL538_25185 PF04324 BFD-like [2Fe-2S] binding domain AL538_25185 PF13806 Rieske-like [2Fe-2S] domain AL538_25185 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL538_25185 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL538_25185 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL538_25185 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_25190 PF00005 ABC transporter AL538_25195 PF00528 Binding-protein-dependent transport system inner membrane component AL538_25200 PF00005 ABC transporter AL538_25205 PF03861 ANTAR domain AL538_25205 PF00072 Response regulator receiver domain AL538_25210 PF01738 Dienelactone hydrolase family AL538_25215 PF02885 Glycosyl transferase family, helical bundle domain AL538_25215 PF00591 Glycosyl transferase family, a/b domain AL538_25220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL538_25220 PF10414 Sirohaem synthase dimerisation region AL538_25220 PF14824 Sirohaem biosynthesis protein central AL538_25225 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL538_25225 PF01568 Molydopterin dinucleotide binding domain AL538_25225 PF00384 Molybdopterin oxidoreductase AL538_25230 PF00583 Acetyltransferase (GNAT) family AL538_25235 PF00563 EAL domain AL538_25235 PF00990 Diguanylate cyclase, GGDEF domain AL538_25235 PF08448 PAS fold AL538_25240 PF03222 Tryptophan/tyrosine permease family AL538_25245 PF00990 Diguanylate cyclase, GGDEF domain AL538_25245 PF08448 PAS fold AL538_25255 PF00082 Subtilase family AL538_25255 PF01483 Proprotein convertase P-domain AL538_25265 PF00245 Alkaline phosphatase AL538_25280 PF00072 Response regulator receiver domain AL538_25280 PF00486 Transcriptional regulatory protein, C terminal AL538_25310 PF04314 Copper chaperone PCu(A)C AL538_25315 PF00012 Hsp70 protein AL538_25330 PF00676 Dehydrogenase E1 component AL538_25335 PF02779 Transketolase, pyrimidine binding domain AL538_25335 PF02780 Transketolase, C-terminal domain AL538_25340 PF02817 e3 binding domain AL538_25340 PF00364 Biotin-requiring enzyme AL538_25340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL538_25345 PF00766 Electron transfer flavoprotein FAD-binding domain AL538_25345 PF01012 Electron transfer flavoprotein domain AL538_25350 PF01012 Electron transfer flavoprotein domain AL538_25365 PF02424 ApbE family AL538_25370 PF04205 FMN-binding domain AL538_25370 PF03358 NADPH-dependent FMN reductase AL538_25370 PF00890 FAD binding domain AL538_25375 PF16736 Single Cache-like AL538_25375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_25375 PF00512 His Kinase A (phospho-acceptor) domain AL538_25375 PF00989 PAS fold AL538_25380 PF00072 Response regulator receiver domain AL538_25380 PF00486 Transcriptional regulatory protein, C terminal AL538_25395 PF13417 Glutathione S-transferase, N-terminal domain AL538_25395 PF00043 Glutathione S-transferase, C-terminal domain AL538_25400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_25400 PF03466 LysR substrate binding domain AL538_25410 PF00528 Binding-protein-dependent transport system inner membrane component AL538_25415 PF00528 Binding-protein-dependent transport system inner membrane component AL538_25420 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL538_25425 PF00005 ABC transporter AL538_25430 PF00672 HAMP domain AL538_25430 PF02743 Cache domain AL538_25430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_25460 PF02028 BCCT, betaine/carnitine/choline family transporter AL538_25470 PF00171 Aldehyde dehydrogenase family AL538_25480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_25480 PF03466 LysR substrate binding domain AL538_25485 PF00871 Acetokinase family AL538_25490 PF03880 DbpA RNA binding domain AL538_25490 PF00271 Helicase conserved C-terminal domain AL538_25490 PF00270 DEAD/DEAH box helicase AL538_25495 PF00575 S1 RNA binding domain AL538_25495 PF00773 RNB domain AL538_25495 PF08206 Ribonuclease B OB domain AL538_25500 PF12833 Helix-turn-helix domain AL538_25510 PF12849 PBP superfamily domain AL538_25515 PF01575 MaoC like domain AL538_25550 PF07693 KAP family P-loop domain AL538_25565 PF00239 Resolvase, N terminal domain AL538_25565 PF02796 Helix-turn-helix domain of resolvase AL538_25580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_25580 PF00672 HAMP domain AL538_25580 PF16527 Two-component sensor protein CpxA, periplasmic domain AL538_25580 PF00512 His Kinase A (phospho-acceptor) domain AL538_25585 PF00072 Response regulator receiver domain AL538_25585 PF00486 Transcriptional regulatory protein, C terminal AL538_25590 PF08534 Redoxin AL538_25595 PF08534 Redoxin AL538_25600 PF00892 EamA-like transporter family AL538_25605 PF00005 ABC transporter AL538_25610 PF00196 Bacterial regulatory proteins, luxR family AL538_25610 PF00563 EAL domain AL538_25630 PF00270 DEAD/DEAH box helicase AL538_25630 PF00271 Helicase conserved C-terminal domain AL538_25635 PF00990 Diguanylate cyclase, GGDEF domain AL538_25635 PF05231 MASE1 AL538_25635 PF13426 PAS domain AL538_25635 PF08447 PAS fold AL538_25635 PF08448 PAS fold AL538_25635 PF00563 EAL domain AL538_25640 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL538_25640 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL538_25650 PF01470 Pyroglutamyl peptidase AL538_25665 PF00593 TonB dependent receptor AL538_25665 PF07715 TonB-dependent Receptor Plug Domain AL538_25675 PF13411 MerR HTH family regulatory protein AL538_25680 PF00005 ABC transporter AL538_25685 PF01032 FecCD transport family AL538_25690 PF01032 FecCD transport family AL538_25695 PF01497 Periplasmic binding protein AL538_25705 PF01048 Phosphorylase superfamily AL538_25710 PF04973 Nicotinamide mononucleotide transporter AL538_25720 PF00356 Bacterial regulatory proteins, lacI family AL538_25725 PF00294 pfkB family carbohydrate kinase AL538_25730 PF13407 Periplasmic binding protein domain AL538_25735 PF02653 Branched-chain amino acid transport system / permease component AL538_25740 PF00005 ABC transporter AL538_25745 PF05025 RbsD / FucU transport protein family AL538_25750 PF00563 EAL domain AL538_25750 PF00990 Diguanylate cyclase, GGDEF domain AL538_25755 PF01048 Phosphorylase superfamily AL538_25760 PF01177 Asp/Glu/Hydantoin racemase AL538_25775 PF01609 Transposase DDE domain AL538_25775 PF13006 Insertion element 4 transposase N-terminal AL538_25790 PF09335 SNARE associated Golgi protein AL538_25815 PF04116 Fatty acid hydroxylase superfamily AL538_25830 PF00072 Response regulator receiver domain AL538_25830 PF09308 LuxQ, periplasmic AL538_25830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_25830 PF00512 His Kinase A (phospho-acceptor) domain AL538_25835 PF03150 Di-haem cytochrome c peroxidase AL538_25835 PF00034 Cytochrome c AL538_25840 PF00512 His Kinase A (phospho-acceptor) domain AL538_25840 PF09308 LuxQ, periplasmic AL538_25840 PF00072 Response regulator receiver domain AL538_25840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL538_25845 PF03707 Bacterial signalling protein N terminal repeat AL538_25845 PF00990 Diguanylate cyclase, GGDEF domain AL538_25845 PF00563 EAL domain AL538_25860 PF16200 C-terminal region of band_7 AL538_25860 PF01145 SPFH domain / Band 7 family AL538_25870 PF00881 Nitroreductase family AL538_25875 PF00571 CBS domain AL538_25875 PF00005 ABC transporter AL538_25880 PF00528 Binding-protein-dependent transport system inner membrane component AL538_25885 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL538_25890 PF05199 GMC oxidoreductase AL538_25890 PF00732 GMC oxidoreductase AL538_25895 PF00171 Aldehyde dehydrogenase family AL538_25900 PF13977 BetI-type transcriptional repressor, C-terminal AL538_25900 PF00440 Bacterial regulatory proteins, tetR family AL538_25910 PF07694 5TMR of 5TMR-LYT AL538_25910 PF00990 Diguanylate cyclase, GGDEF domain AL538_25935 PF01553 Acyltransferase AL538_25965 PF00691 OmpA family AL538_25965 PF13488 Glycine zipper AL538_26000 PF00437 Type II/IV secretion system protein AL538_26005 PF10609 NUBPL iron-transfer P-loop NTPase AL538_26015 PF04972 BON domain AL538_26015 PF00263 Bacterial type II and III secretion system protein AL538_26015 PF13629 Pilus formation protein N terminal region AL538_26035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_26035 PF03466 LysR substrate binding domain AL538_26040 PF12146 Serine aminopeptidase, S33 AL538_26045 PF00478 IMP dehydrogenase / GMP reductase domain AL538_26050 PF03853 YjeF-related protein N-terminus AL538_26050 PF01256 Carbohydrate kinase AL538_26060 PF00072 Response regulator receiver domain AL538_26065 PF00248 Aldo/keto reductase family AL538_26080 PF00654 Voltage gated chloride channel AL538_26090 PF01566 Natural resistance-associated macrophage protein AL538_26095 PF01227 GTP cyclohydrolase I AL538_26100 PF03453 MoeA N-terminal region (domain I and II) AL538_26100 PF03454 MoeA C-terminal region (domain IV) AL538_26100 PF00994 Probable molybdopterin binding domain AL538_26105 PF00899 ThiF family AL538_26120 PF00581 Rhodanese-like domain AL538_26125 PF00990 Diguanylate cyclase, GGDEF domain AL538_26125 PF03707 Bacterial signalling protein N terminal repeat AL538_26125 PF00563 EAL domain AL538_26130 PF00704 Glycosyl hydrolases family 18 AL538_26130 PF08329 Chitinase A, N-terminal domain AL538_26140 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL538_26145 PF02779 Transketolase, pyrimidine binding domain AL538_26145 PF00456 Transketolase, thiamine diphosphate binding domain AL538_26145 PF02780 Transketolase, C-terminal domain AL538_26150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_26150 PF00672 HAMP domain AL538_26150 PF12729 Four helix bundle sensory module for signal transduction AL538_26155 PF07690 Major Facilitator Superfamily AL538_26160 PF00793 DAHP synthetase I family AL538_26165 PF00691 OmpA family AL538_26165 PF01389 OmpA-like transmembrane domain AL538_26170 PF01040 UbiA prenyltransferase family AL538_26175 PF02628 Cytochrome oxidase assembly protein AL538_26195 PF00510 Cytochrome c oxidase subunit III AL538_26200 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AL538_26205 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL538_26210 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AL538_26210 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL538_26215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL538_26215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL538_26215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL538_26215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL538_26225 PF01810 LysE type translocator AL538_26245 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL538_26260 PF00892 EamA-like transporter family AL538_26265 PF00462 Glutaredoxin AL538_26275 PF07690 Major Facilitator Superfamily AL538_26280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_26280 PF03466 LysR substrate binding domain AL538_26285 PF00563 EAL domain AL538_26285 PF00990 Diguanylate cyclase, GGDEF domain AL538_26285 PF08447 PAS fold AL538_26285 PF08448 PAS fold AL538_26290 PF01476 LysM domain AL538_26290 PF01551 Peptidase family M23 AL538_26290 PF08525 Opacity-associated protein A N-terminal motif AL538_26310 PF02743 Cache domain AL538_26310 PF00672 HAMP domain AL538_26310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_26320 PF03222 Tryptophan/tyrosine permease family AL538_26355 PF00107 Zinc-binding dehydrogenase AL538_26355 PF08240 Alcohol dehydrogenase GroES-like domain AL538_26360 PF02378 Phosphotransferase system, EIIC AL538_26360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL538_26365 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL538_26370 PF07702 UTRA domain AL538_26370 PF00392 Bacterial regulatory proteins, gntR family AL538_26375 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL538_26375 PF02378 Phosphotransferase system, EIIC AL538_26375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL538_26380 PF07748 Glycosyl hydrolases family 38 C-terminal domain AL538_26380 PF01074 Glycosyl hydrolases family 38 N-terminal domain AL538_26380 PF09261 Alpha mannosidase middle domain AL538_26385 PF01238 Phosphomannose isomerase type I AL538_26390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL538_26400 PF01638 HxlR-like helix-turn-helix AL538_26415 PF01758 Sodium Bile acid symporter family AL538_26430 PF01161 Phosphatidylethanolamine-binding protein AL538_26435 PF02567 Phenazine biosynthesis-like protein AL538_26440 PF02525 Flavodoxin-like fold AL538_26445 PF00999 Sodium/hydrogen exchanger family AL538_26445 PF02254 TrkA-N domain AL538_26455 PF03466 LysR substrate binding domain AL538_26455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_26485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_26485 PF03466 LysR substrate binding domain AL538_26500 PF14765 Polyketide synthase dehydratase AL538_26500 PF00698 Acyl transferase domain AL538_26500 PF08659 KR domain AL538_26500 PF02801 Beta-ketoacyl synthase, C-terminal domain AL538_26500 PF16197 Ketoacyl-synthetase C-terminal extension AL538_26500 PF00107 Zinc-binding dehydrogenase AL538_26500 PF08240 Alcohol dehydrogenase GroES-like domain AL538_26500 PF00550 Phosphopantetheine attachment site AL538_26500 PF00109 Beta-ketoacyl synthase, N-terminal domain AL538_26505 PF00128 Alpha amylase, catalytic domain AL538_26525 PF00072 Response regulator receiver domain AL538_26525 PF01584 CheW-like domain AL538_26535 PF01243 Pyridoxamine 5'-phosphate oxidase AL538_26540 PF06228 Haem utilisation ChuX/HutX AL538_26545 PF04055 Radical SAM superfamily AL538_26550 PF03544 Gram-negative bacterial TonB protein C-terminal AL538_26555 PF01618 MotA/TolQ/ExbB proton channel family AL538_26560 PF02472 Biopolymer transport protein ExbD/TolR AL538_26570 PF01032 FecCD transport family AL538_26575 PF00005 ABC transporter AL538_26580 PF00672 HAMP domain AL538_26580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL538_26580 PF17200 Single Cache domain 2 AL538_26590 PF00005 ABC transporter AL538_26600 PF01042 Endoribonuclease L-PSP AL538_26610 PF02838 Glycosyl hydrolase family 20, domain 2 AL538_26610 PF00728 Glycosyl hydrolase family 20, catalytic domain AL538_26615 PF01081 KDPG and KHG aldolase AL538_26620 PF00294 pfkB family carbohydrate kinase AL538_26625 PF00474 Sodium:solute symporter family AL538_26635 PF07969 Amidohydrolase family AL538_26645 PF01418 Helix-turn-helix domain, rpiR family AL538_26645 PF02685 Glucokinase AL538_26645 PF01380 SIS domain AL538_26660 PF00384 Molybdopterin oxidoreductase AL538_26660 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL538_26660 PF12838 4Fe-4S dicluster domain AL538_26660 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL538_26660 PF01568 Molydopterin dinucleotide binding domain AL538_26675 PF00873 AcrB/AcrD/AcrF family AL538_26700 PF00698 Acyl transferase domain AL538_26700 PF08240 Alcohol dehydrogenase GroES-like domain AL538_26700 PF02801 Beta-ketoacyl synthase, C-terminal domain AL538_26700 PF00109 Beta-ketoacyl synthase, N-terminal domain AL538_26700 PF08659 KR domain AL538_26700 PF00550 Phosphopantetheine attachment site AL538_26700 PF14765 Polyketide synthase dehydratase AL538_26700 PF16197 Ketoacyl-synthetase C-terminal extension AL538_26705 PF03543 Yersinia/Haemophilus virulence surface antigen AL538_26715 PF13673 Acetyltransferase (GNAT) domain AL538_26715 PF00583 Acetyltransferase (GNAT) family AL538_26735 PF05193 Peptidase M16 inactive domain AL538_26735 PF00675 Insulinase (Peptidase family M16) AL538_26740 PF06472 ABC transporter transmembrane region 2 AL538_26740 PF00005 ABC transporter AL538_26745 PF07715 TonB-dependent Receptor Plug Domain AL538_26755 PF01618 MotA/TolQ/ExbB proton channel family AL538_26760 PF01618 MotA/TolQ/ExbB proton channel family AL538_26765 PF02472 Biopolymer transport protein ExbD/TolR AL538_26780 PF00293 NUDIX domain AL538_26790 PF14376 Haem-binding domain AL538_26790 PF03150 Di-haem cytochrome c peroxidase AL538_26790 PF00034 Cytochrome c AL538_26795 PF13302 Acetyltransferase (GNAT) domain AL538_26805 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL538_26805 PF00326 Prolyl oligopeptidase family AL538_26810 PF16326 ABC transporter C-terminal domain AL538_26810 PF00005 ABC transporter AL538_26810 PF12848 ABC transporter AL538_26815 PF01980 tRNA-methyltransferase O AL538_26835 PF07690 Major Facilitator Superfamily AL538_26850 PF03466 LysR substrate binding domain AL538_26850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_26855 PF00582 Universal stress protein family AL538_26865 PF08220 DeoR-like helix-turn-helix domain AL538_26865 PF00455 DeoR C terminal sensor domain AL538_26870 PF03009 Glycerophosphoryl diester phosphodiesterase family AL538_26875 PF13416 Bacterial extracellular solute-binding protein AL538_26880 PF00528 Binding-protein-dependent transport system inner membrane component AL538_26885 PF00528 Binding-protein-dependent transport system inner membrane component AL538_26890 PF17912 MalK OB fold domain AL538_26890 PF00005 ABC transporter AL538_26905 PF01047 MarR family AL538_26920 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL538_26920 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL538_26925 PF00132 Bacterial transferase hexapeptide (six repeats) AL538_26930 PF01979 Amidohydrolase family AL538_26940 PF01734 Patatin-like phospholipase AL538_26945 PF05726 Pirin C-terminal cupin domain AL538_26945 PF02678 Pirin AL538_26950 PF00313 'Cold-shock' DNA-binding domain AL538_26965 PF00962 Adenosine/AMP deaminase AL538_26970 PF17151 Periplasmic sensor domain AL538_26970 PF00990 Diguanylate cyclase, GGDEF domain AL538_26975 PF03466 LysR substrate binding domain AL538_26975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_26990 PF00462 Glutaredoxin AL538_26990 PF08534 Redoxin AL538_26995 PF08241 Methyltransferase domain AL538_27005 PF00990 Diguanylate cyclase, GGDEF domain AL538_27005 PF08448 PAS fold AL538_27010 PF07943 Penicillin-binding protein 5, C-terminal domain AL538_27010 PF00768 D-alanyl-D-alanine carboxypeptidase AL538_27015 PF02028 BCCT, betaine/carnitine/choline family transporter AL538_27020 PF02525 Flavodoxin-like fold AL538_27025 PF03466 LysR substrate binding domain AL538_27025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_27030 PF02798 Glutathione S-transferase, N-terminal domain AL538_27035 PF00440 Bacterial regulatory proteins, tetR family AL538_27035 PF02909 Tetracyclin repressor-like, C-terminal domain AL538_27040 PF01872 RibD C-terminal domain AL538_27100 PF13693 Winged helix-turn-helix DNA-binding AL538_27105 PF02914 Bacteriophage Mu transposase AL538_27105 PF02316 Mu DNA-binding domain AL538_27105 PF09039 Mu DNA binding, I gamma subdomain AL538_27105 PF09299 Mu transposase, C-terminal AL538_27110 PF09077 Mu B transposition protein, C terminal AL538_27110 PF13401 AAA domain AL538_27180 PF08765 Mor transcription activator family AL538_27210 PF08461 Ribonuclease R winged-helix domain AL538_27215 PF11985 Protein of unknown function (DUF3486) AL538_27220 PF03237 Terminase-like family AL538_27225 PF06074 Protein of unknown function (DUF935) AL538_27245 PF10123 Mu-like prophage I protein AL538_27255 PF10124 Mu-like prophage major head subunit gpT AL538_27260 PF17891 Mu-like prophage FluMu N-terminal domain AL538_27260 PF12949 HeH/LEM domain AL538_27265 PF07030 Protein of unknown function (DUF1320) AL538_27335 PF00106 short chain dehydrogenase AL538_27345 PF00375 Sodium:dicarboxylate symporter family AL538_27350 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL538_27360 PF00127 Copper binding proteins, plastocyanin/azurin family AL538_27365 PF02378 Phosphotransferase system, EIIC AL538_27370 PF00563 EAL domain AL538_27370 PF00990 Diguanylate cyclase, GGDEF domain AL538_27370 PF03707 Bacterial signalling protein N terminal repeat AL538_27380 PF00691 OmpA family AL538_27970 PF03466 LysR substrate binding domain AL538_27970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL538_27990 PF04002 RadC-like JAB domain AL538_28025 PF00444 Ribosomal protein L36 AL538_28075 PF00583 Acetyltransferase (GNAT) family AL538_28175 PF01809 Putative membrane protein insertion efficiency factor AL538_28245 PF10795 Protein of unknown function (DUF2607) AL538_28470 PF01809 Putative membrane protein insertion efficiency factor AL538_28495 PF01809 Putative membrane protein insertion efficiency factor AL538_28510 PF08719 Domain of unknown function (DUF1768) AL538_28510 PF00925 GTP cyclohydrolase II AL538_28600 PF01679 Proteolipid membrane potential modulator AL538_28660 PF03701 Uncharacterised protein family (UPF0181)