locus-tag class description AL543_00005 PF13186 Iron-sulfur cluster-binding domain AL543_00005 PF04055 Radical SAM superfamily AL543_00010 PF00884 Sulfatase AL543_00015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_00015 PF03466 LysR substrate binding domain AL543_00020 PF07690 Major Facilitator Superfamily AL543_00025 PF08267 Cobalamin-independent synthase, N-terminal domain AL543_00025 PF01717 Cobalamin-independent synthase, Catalytic domain AL543_00035 PF13358 DDE superfamily endonuclease AL543_00045 PF00672 HAMP domain AL543_00045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_00045 PF02743 Cache domain AL543_00070 PF01551 Peptidase family M23 AL543_00075 PF05638 Type VI secretion system effector, Hcp AL543_00085 PF00455 DeoR C terminal sensor domain AL543_00085 PF08220 DeoR-like helix-turn-helix domain AL543_00090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL543_00090 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL543_00095 PF17042 Nucleotide-binding C-terminal domain AL543_00095 PF07005 Sugar-binding N-terminal domain AL543_00100 PF00596 Class II Aldolase and Adducin N-terminal domain AL543_00105 PF01261 Xylose isomerase-like TIM barrel AL543_00110 PF01370 NAD dependent epimerase/dehydratase family AL543_00115 PF02447 GntP family permease AL543_00220 PF00145 C-5 cytosine-specific DNA methylase AL543_00265 PF03354 Phage Terminase AL543_00280 PF00717 Peptidase S24-like AL543_00280 PF01381 Helix-turn-helix AL543_00310 PF00107 Zinc-binding dehydrogenase AL543_00310 PF08240 Alcohol dehydrogenase GroES-like domain AL543_00315 PF00155 Aminotransferase class I and II AL543_00320 PF01053 Cys/Met metabolism PLP-dependent enzyme AL543_00325 PF03466 LysR substrate binding domain AL543_00325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_00345 PF00360 Phytochrome region AL543_00345 PF00563 EAL domain AL543_00345 PF01590 GAF domain AL543_00345 PF00990 Diguanylate cyclase, GGDEF domain AL543_00350 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL543_00350 PF00072 Response regulator receiver domain AL543_00350 PF00512 His Kinase A (phospho-acceptor) domain AL543_00350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_00350 PF00672 HAMP domain AL543_00350 PF01627 Hpt domain AL543_00365 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AL543_00365 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AL543_00370 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL543_00375 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL543_00375 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL543_00395 PF02595 Glycerate kinase family AL543_00400 PF02447 GntP family permease AL543_00405 PF13556 PucR C-terminal helix-turn-helix domain AL543_00405 PF17853 GGDEF-like domain AL543_00405 PF05651 Putative sugar diacid recognition AL543_00410 PF03150 Di-haem cytochrome c peroxidase AL543_00410 PF00034 Cytochrome c AL543_00415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_00415 PF00672 HAMP domain AL543_00420 PF01243 Pyridoxamine 5'-phosphate oxidase AL543_00425 PF06228 Haem utilisation ChuX/HutX AL543_00430 PF04055 Radical SAM superfamily AL543_00435 PF03544 Gram-negative bacterial TonB protein C-terminal AL543_00440 PF01618 MotA/TolQ/ExbB proton channel family AL543_00445 PF02472 Biopolymer transport protein ExbD/TolR AL543_00450 PF01497 Periplasmic binding protein AL543_00455 PF01032 FecCD transport family AL543_00460 PF00005 ABC transporter AL543_00500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_00500 PF00672 HAMP domain AL543_00500 PF02743 Cache domain AL543_00505 PF03473 MOSC domain AL543_00505 PF03476 MOSC N-terminal beta barrel domain AL543_00505 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_00505 PF03476 MOSC N-terminal beta barrel domain AL543_00505 PF03473 MOSC domain AL543_00505 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_00510 PF01979 Amidohydrolase family AL543_00520 PF13358 DDE superfamily endonuclease AL543_00530 PF05656 Protein of unknown function (DUF805) AL543_00540 PF05958 tRNA (Uracil-5-)-methyltransferase AL543_00545 PF05661 Protein of unknown function (DUF808) AL543_00550 PF00005 ABC transporter AL543_00550 PF12848 ABC transporter AL543_00565 PF00313 'Cold-shock' DNA-binding domain AL543_00590 PF17151 Periplasmic sensor domain AL543_00590 PF00990 Diguanylate cyclase, GGDEF domain AL543_00595 PF00455 DeoR C terminal sensor domain AL543_00595 PF08220 DeoR-like helix-turn-helix domain AL543_00605 PF00149 Calcineurin-like phosphoesterase AL543_00605 PF02872 5'-nucleotidase, C-terminal domain AL543_00620 PF00528 Binding-protein-dependent transport system inner membrane component AL543_00625 PF00528 Binding-protein-dependent transport system inner membrane component AL543_00625 PF14785 Maltose transport system permease protein MalF P2 domain AL543_00630 PF01547 Bacterial extracellular solute-binding protein AL543_00635 PF00005 ABC transporter AL543_00635 PF08402 TOBE domain AL543_00640 PF13302 Acetyltransferase (GNAT) domain AL543_00655 PF01906 Putative heavy-metal-binding AL543_00660 PF00196 Bacterial regulatory proteins, luxR family AL543_00685 PF01584 CheW-like domain AL543_00685 PF00072 Response regulator receiver domain AL543_00690 PF01047 MarR family AL543_00695 PF00990 Diguanylate cyclase, GGDEF domain AL543_00710 PF03707 Bacterial signalling protein N terminal repeat AL543_00710 PF00990 Diguanylate cyclase, GGDEF domain AL543_00710 PF00563 EAL domain AL543_00730 PF03466 LysR substrate binding domain AL543_00730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_00735 PF00563 EAL domain AL543_00735 PF00990 Diguanylate cyclase, GGDEF domain AL543_00745 PF02678 Pirin AL543_00745 PF05726 Pirin C-terminal cupin domain AL543_00750 PF06865 Pyrimidine/purine nucleoside phosphorylase AL543_00760 PF07690 Major Facilitator Superfamily AL543_00770 PF00672 HAMP domain AL543_00770 PF12729 Four helix bundle sensory module for signal transduction AL543_00770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_00775 PF05362 Lon protease (S16) C-terminal proteolytic domain AL543_00775 PF13654 AAA domain AL543_00785 PF00005 ABC transporter AL543_00785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_00790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_00790 PF03466 LysR substrate binding domain AL543_00795 PF02652 L-lactate permease AL543_00800 PF01070 FMN-dependent dehydrogenase AL543_00810 PF01609 Transposase DDE domain AL543_00810 PF13006 Insertion element 4 transposase N-terminal AL543_00815 PF03618 Kinase/pyrophosphorylase AL543_00820 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL543_00820 PF02896 PEP-utilising enzyme, TIM barrel domain AL543_00820 PF00391 PEP-utilising enzyme, mobile domain AL543_00830 PF13581 Histidine kinase-like ATPase domain AL543_00845 PF01470 Pyroglutamyl peptidase AL543_00850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_00850 PF08447 PAS fold AL543_00855 PF01554 MatE AL543_00860 PF01797 Transposase IS200 like AL543_00865 PF00793 DAHP synthetase I family AL543_00870 PF00005 ABC transporter AL543_00875 PF00528 Binding-protein-dependent transport system inner membrane component AL543_00880 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_00885 PF00528 Binding-protein-dependent transport system inner membrane component AL543_00890 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL543_00890 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL543_00890 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL543_00890 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL543_00900 PF01551 Peptidase family M23 AL543_00900 PF04225 Opacity-associated protein A LysM-like domain AL543_00905 PF02378 Phosphotransferase system, EIIC AL543_00905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL543_00905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL543_00910 PF01232 Mannitol dehydrogenase Rossmann domain AL543_00910 PF08125 Mannitol dehydrogenase C-terminal domain AL543_00915 PF05068 Mannitol repressor AL543_00920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL543_00950 PF00892 EamA-like transporter family AL543_00955 PF01047 MarR family AL543_00965 PF03466 LysR substrate binding domain AL543_00965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_00970 PF03358 NADPH-dependent FMN reductase AL543_00980 PF08659 KR domain AL543_00980 PF08240 Alcohol dehydrogenase GroES-like domain AL543_00980 PF00698 Acyl transferase domain AL543_00980 PF16197 Ketoacyl-synthetase C-terminal extension AL543_00980 PF08990 Erythronolide synthase docking AL543_00980 PF00109 Beta-ketoacyl synthase, N-terminal domain AL543_00980 PF02801 Beta-ketoacyl synthase, C-terminal domain AL543_00980 PF14765 Polyketide synthase dehydratase AL543_00980 PF00550 Phosphopantetheine attachment site AL543_00985 PF00892 EamA-like transporter family AL543_00990 PF13460 NAD(P)H-binding AL543_00995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_00995 PF03466 LysR substrate binding domain AL543_01005 PF13358 DDE superfamily endonuclease AL543_01010 PF00106 short chain dehydrogenase AL543_01015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_01015 PF03466 LysR substrate binding domain AL543_01020 PF00579 tRNA synthetases class I (W and Y) AL543_01025 PF04013 Putative SAM-dependent RNA methyltransferase AL543_01035 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL543_01040 PF13520 Amino acid permease AL543_01045 PF01276 Orn/Lys/Arg decarboxylase, major domain AL543_01045 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL543_01045 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL543_01055 PF03472 Autoinducer binding domain AL543_01055 PF00196 Bacterial regulatory proteins, luxR family AL543_01075 PF00171 Aldehyde dehydrogenase family AL543_01080 PF01037 Lrp/AsnC ligand binding domain AL543_01085 PF00672 HAMP domain AL543_01085 PF02743 Cache domain AL543_01085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_01095 PF00474 Sodium:solute symporter family AL543_01105 PF00171 Aldehyde dehydrogenase family AL543_01105 PF14850 DNA-binding domain of Proline dehydrogenase AL543_01105 PF01619 Proline dehydrogenase AL543_01105 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL543_01110 PF12833 Helix-turn-helix domain AL543_01120 PF03781 Sulfatase-modifying factor enzyme 1 AL543_01125 PF00072 Response regulator receiver domain AL543_01125 PF00196 Bacterial regulatory proteins, luxR family AL543_01130 PF01243 Pyridoxamine 5'-phosphate oxidase AL543_01130 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL543_01135 PF00529 HlyD membrane-fusion protein of T1SS AL543_01150 PF03412 Peptidase C39 family AL543_01150 PF00005 ABC transporter AL543_01150 PF00664 ABC transporter transmembrane region AL543_01160 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL543_01160 PF07971 Glycosyl hydrolase family 92 AL543_01170 PF00990 Diguanylate cyclase, GGDEF domain AL543_01170 PF00072 Response regulator receiver domain AL543_01180 PF00672 HAMP domain AL543_01180 PF02743 Cache domain AL543_01180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_01185 PF01339 CheB methylesterase AL543_01185 PF00072 Response regulator receiver domain AL543_01190 PF03975 CheD chemotactic sensory transduction AL543_01195 PF03705 CheR methyltransferase, all-alpha domain AL543_01195 PF01739 CheR methyltransferase, SAM binding domain AL543_01200 PF00672 HAMP domain AL543_01200 PF02203 Tar ligand binding domain homologue AL543_01200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_01205 PF01584 CheW-like domain AL543_01210 PF01584 CheW-like domain AL543_01215 PF01584 CheW-like domain AL543_01215 PF09078 CheY binding AL543_01215 PF02895 Signal transducing histidine kinase, homodimeric domain AL543_01215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_01215 PF01627 Hpt domain AL543_01220 PF00072 Response regulator receiver domain AL543_01230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_01235 PF00528 Binding-protein-dependent transport system inner membrane component AL543_01240 PF00528 Binding-protein-dependent transport system inner membrane component AL543_01240 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_01245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_01245 PF00005 ABC transporter AL543_01250 PF08019 Phosphoethanolamine transferase EptA/EptB AL543_01250 PF00884 Sulfatase AL543_01255 PF01797 Transposase IS200 like AL543_01260 PF00512 His Kinase A (phospho-acceptor) domain AL543_01260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_01260 PF08521 Two-component sensor kinase N-terminal AL543_01265 PF00072 Response regulator receiver domain AL543_01265 PF00486 Transcriptional regulatory protein, C terminal AL543_01275 PF00106 short chain dehydrogenase AL543_01285 PF00501 AMP-binding enzyme AL543_01295 PF13718 GNAT acetyltransferase 2 AL543_01295 PF05127 Helicase AL543_01300 PF13416 Bacterial extracellular solute-binding protein AL543_01305 PF02195 ParB-like nuclease domain AL543_01305 PF08775 ParB family AL543_01310 PF13614 AAA domain AL543_01310 PF18607 ParA helix turn helix domain AL543_01340 PF01709 Transcriptional regulator AL543_01345 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL543_01345 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL543_01355 PF10928 Protein of unknown function (DUF2810) AL543_01360 PF17874 MalT-like TPR region AL543_01360 PF00196 Bacterial regulatory proteins, luxR family AL543_01365 PF00343 Carbohydrate phosphorylase AL543_01370 PF02446 4-alpha-glucanotransferase AL543_01375 PF00128 Alpha amylase, catalytic domain AL543_01375 PF02806 Alpha amylase, C-terminal all-beta domain AL543_01375 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL543_01380 PF05638 Type VI secretion system effector, Hcp AL543_01385 PF04717 Type VI secretion system, phage-baseplate injector AL543_01385 PF16671 Actin cross-linking domain AL543_01410 PF00842 Alanine racemase, C-terminal domain AL543_01410 PF01168 Alanine racemase, N-terminal domain AL543_01410 PF01757 Acyltransferase family AL543_01420 PF00939 Sodium:sulfate symporter transmembrane region AL543_01425 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL543_01430 PF00704 Glycosyl hydrolases family 18 AL543_01430 PF08329 Chitinase A, N-terminal domain AL543_01455 PF01569 PAP2 superfamily AL543_01460 PF02225 PA domain AL543_01460 PF04389 Peptidase family M28 AL543_01465 PF00375 Sodium:dicarboxylate symporter family AL543_01470 PF04314 Copper chaperone PCu(A)C AL543_01475 PF02630 SCO1/SenC AL543_01490 PF03616 Sodium/glutamate symporter AL543_01495 PF07238 PilZ domain AL543_01495 PF12945 Flagellar protein YcgR AL543_01505 PF13443 Cro/C1-type HTH DNA-binding domain AL543_01520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL543_01520 PF00529 HlyD membrane-fusion protein of T1SS AL543_01525 PF11742 Protein of unknown function (DUF3302) AL543_01530 PF00990 Diguanylate cyclase, GGDEF domain AL543_01545 PF01048 Phosphorylase superfamily AL543_01555 PF08349 Protein of unknown function (DUF1722) AL543_01560 PF13411 MerR HTH family regulatory protein AL543_01565 PF00875 DNA photolyase AL543_01565 PF03441 FAD binding domain of DNA photolyase AL543_01570 PF03734 L,D-transpeptidase catalytic domain AL543_01570 PF01476 LysM domain AL543_01570 PF17969 L,D-transpeptidase C-terminal domain AL543_01580 PF00270 DEAD/DEAH box helicase AL543_01580 PF00271 Helicase conserved C-terminal domain AL543_01585 PF12729 Four helix bundle sensory module for signal transduction AL543_01585 PF00672 HAMP domain AL543_01585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_01590 PF12849 PBP superfamily domain AL543_01595 PF00528 Binding-protein-dependent transport system inner membrane component AL543_01600 PF00528 Binding-protein-dependent transport system inner membrane component AL543_01605 PF00005 ABC transporter AL543_01610 PF00563 EAL domain AL543_01610 PF00990 Diguanylate cyclase, GGDEF domain AL543_01610 PF03707 Bacterial signalling protein N terminal repeat AL543_01625 PF00916 Sulfate permease family AL543_01625 PF01740 STAS domain AL543_01635 PF01476 LysM domain AL543_01635 PF01551 Peptidase family M23 AL543_01635 PF08525 Opacity-associated protein A N-terminal motif AL543_01640 PF03707 Bacterial signalling protein N terminal repeat AL543_01640 PF00990 Diguanylate cyclase, GGDEF domain AL543_01640 PF00563 EAL domain AL543_01645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_01645 PF03466 LysR substrate binding domain AL543_01650 PF07690 Major Facilitator Superfamily AL543_01655 PF00376 MerR family regulatory protein AL543_01655 PF09278 MerR, DNA binding AL543_01660 PF13358 DDE superfamily endonuclease AL543_01675 PF17848 Acetyl-coA carboxylase zinc finger domain AL543_01675 PF01039 Carboxyl transferase domain AL543_01690 PF00462 Glutaredoxin AL543_01690 PF08534 Redoxin AL543_01695 PF00892 EamA-like transporter family AL543_01700 PF13609 Gram-negative porin AL543_01705 PF02566 OsmC-like protein AL543_01710 PF01047 MarR family AL543_01715 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL543_01730 PF12833 Helix-turn-helix domain AL543_01735 PF01810 LysE type translocator AL543_01745 PF00005 ABC transporter AL543_01745 PF00664 ABC transporter transmembrane region AL543_01755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL543_01765 PF03466 LysR substrate binding domain AL543_01765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_01770 PF10688 Bacterial inner membrane protein AL543_01775 PF01081 KDPG and KHG aldolase AL543_01780 PF00294 pfkB family carbohydrate kinase AL543_01785 PF02614 Glucuronate isomerase AL543_01790 PF08125 Mannitol dehydrogenase C-terminal domain AL543_01790 PF01232 Mannitol dehydrogenase Rossmann domain AL543_01795 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL543_01800 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL543_01805 PF03480 Bacterial extracellular solute-binding protein, family 7 AL543_01810 PF00392 Bacterial regulatory proteins, gntR family AL543_01810 PF07729 FCD domain AL543_01815 PF03786 D-mannonate dehydratase (UxuA) AL543_01820 PF00270 DEAD/DEAH box helicase AL543_01820 PF00271 Helicase conserved C-terminal domain AL543_01835 PF12833 Helix-turn-helix domain AL543_01835 PF12852 Cupin AL543_01840 PF00462 Glutaredoxin AL543_01855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_01855 PF00672 HAMP domain AL543_01865 PF01797 Transposase IS200 like AL543_01870 PF00672 HAMP domain AL543_01870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_01880 PF01566 Natural resistance-associated macrophage protein AL543_01885 PF00128 Alpha amylase, catalytic domain AL543_01885 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL543_01890 PF02264 LamB porin AL543_01895 PF07148 Maltose operon periplasmic protein precursor (MalM) AL543_01905 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL543_01925 PF03466 LysR substrate binding domain AL543_01925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_01930 PF07681 DoxX AL543_01935 PF00730 HhH-GPD superfamily base excision DNA repair protein AL543_01935 PF06029 AlkA N-terminal domain AL543_01940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL543_01940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL543_01950 PF00939 Sodium:sulfate symporter transmembrane region AL543_01955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_01955 PF17203 Single cache domain 3 AL543_01960 PF00072 Response regulator receiver domain AL543_01960 PF12431 Transcriptional regulator AL543_01965 PF03600 Citrate transporter AL543_01970 PF07670 Nucleoside recognition AL543_01975 PF07670 Nucleoside recognition AL543_01980 PF00375 Sodium:dicarboxylate symporter family AL543_01995 PF02001 Protein of unknown function DUF134 AL543_02015 PF01483 Proprotein convertase P-domain AL543_02015 PF07504 Fungalysin/Thermolysin Propeptide Motif AL543_02015 PF01447 Thermolysin metallopeptidase, catalytic domain AL543_02015 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL543_02025 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL543_02025 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL543_02030 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL543_02030 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL543_02035 PF00581 Rhodanese-like domain AL543_02040 PF12792 CSS motif domain associated with EAL AL543_02040 PF00563 EAL domain AL543_02045 PF13419 Haloacid dehalogenase-like hydrolase AL543_02050 PF00916 Sulfate permease family AL543_02050 PF01740 STAS domain AL543_02055 PF01797 Transposase IS200 like AL543_02060 PF00849 RNA pseudouridylate synthase AL543_02120 PF10431 C-terminal, D2-small domain, of ClpB protein AL543_02120 PF17871 AAA lid domain AL543_02120 PF00004 ATPase family associated with various cellular activities (AAA) AL543_02120 PF07724 AAA domain (Cdc48 subfamily) AL543_02150 PF16671 Actin cross-linking domain AL543_02150 PF04717 Type VI secretion system, phage-baseplate injector AL543_02160 PF13358 DDE superfamily endonuclease AL543_02180 PF05025 RbsD / FucU transport protein family AL543_02185 PF00005 ABC transporter AL543_02190 PF02653 Branched-chain amino acid transport system / permease component AL543_02195 PF13407 Periplasmic binding protein domain AL543_02200 PF00294 pfkB family carbohydrate kinase AL543_02205 PF00356 Bacterial regulatory proteins, lacI family AL543_02210 PF04973 Nicotinamide mononucleotide transporter AL543_02215 PF01048 Phosphorylase superfamily AL543_02225 PF03009 Glycerophosphoryl diester phosphodiesterase family AL543_02230 PF07690 Major Facilitator Superfamily AL543_02245 PF00512 His Kinase A (phospho-acceptor) domain AL543_02245 PF02743 Cache domain AL543_02245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_02250 PF00158 Sigma-54 interaction domain AL543_02250 PF02954 Bacterial regulatory protein, Fis family AL543_02250 PF00072 Response regulator receiver domain AL543_02270 PF01266 FAD dependent oxidoreductase AL543_02275 PF00041 Fibronectin type III domain AL543_02275 PF12561 ToxR activated gene A lipoprotein domain AL543_02280 PF01327 Polypeptide deformylase AL543_02285 PF03611 PTS system sugar-specific permease component AL543_02295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL543_02300 PF00356 Bacterial regulatory proteins, lacI family AL543_02305 PF00175 Oxidoreductase NAD-binding domain AL543_02305 PF00970 Oxidoreductase FAD-binding domain AL543_02305 PF00042 Globin AL543_02315 PF03222 Tryptophan/tyrosine permease family AL543_02320 PF01212 Beta-eliminating lyase AL543_02330 PF12843 Putative quorum-sensing-regulated virulence factor AL543_02340 PF00563 EAL domain AL543_02340 PF00990 Diguanylate cyclase, GGDEF domain AL543_02340 PF08448 PAS fold AL543_02345 PF00313 'Cold-shock' DNA-binding domain AL543_02380 PF13519 von Willebrand factor type A domain AL543_02395 PF01882 Protein of unknown function DUF58 AL543_02400 PF07726 ATPase family associated with various cellular activities (AAA) AL543_02400 PF17863 AAA lid domain AL543_02420 PF01773 Na+ dependent nucleoside transporter N-terminus AL543_02420 PF07670 Nucleoside recognition AL543_02420 PF07662 Na+ dependent nucleoside transporter C-terminus AL543_02425 PF07687 Peptidase dimerisation domain AL543_02425 PF01546 Peptidase family M20/M25/M40 AL543_02435 PF01590 GAF domain AL543_02435 PF00158 Sigma-54 interaction domain AL543_02440 PF00042 Globin AL543_02440 PF00970 Oxidoreductase FAD-binding domain AL543_02440 PF00175 Oxidoreductase NAD-binding domain AL543_02445 PF00313 'Cold-shock' DNA-binding domain AL543_02450 PF03889 Alternative ribosome-rescue factor A AL543_02465 PF00072 Response regulator receiver domain AL543_02475 PF01256 Carbohydrate kinase AL543_02475 PF03853 YjeF-related protein N-terminus AL543_02480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL543_02480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL543_02490 PF07885 Ion channel AL543_02505 PF00478 IMP dehydrogenase / GMP reductase domain AL543_02510 PF02899 Phage integrase, N-terminal SAM-like domain AL543_02510 PF00589 Phage integrase family AL543_02515 PF07669 Eco57I restriction-modification methylase AL543_02580 PF05840 Bacteriophage replication gene A protein (GPA) AL543_02740 PF00270 DEAD/DEAH box helicase AL543_02740 PF00271 Helicase conserved C-terminal domain AL543_02745 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL543_02750 PF02540 NAD synthase AL543_02755 PF01467 Cytidylyltransferase-like AL543_02760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_02760 PF00672 HAMP domain AL543_02760 PF17200 Single Cache domain 2 AL543_02765 PF11849 Domain of unknown function (DUF3369) AL543_02770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_02770 PF00512 His Kinase A (phospho-acceptor) domain AL543_02770 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_02780 PF03553 Na+/H+ antiporter family AL543_02785 PF07690 Major Facilitator Superfamily AL543_02795 PF08448 PAS fold AL543_02795 PF00990 Diguanylate cyclase, GGDEF domain AL543_02800 PF00657 GDSL-like Lipase/Acylhydrolase AL543_02805 PF16458 Beta-prism lectin AL543_02805 PF12563 Hemolytic toxin N terminal AL543_02805 PF07968 Leukocidin/Hemolysin toxin family AL543_02810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_02810 PF00672 HAMP domain AL543_02810 PF12729 Four helix bundle sensory module for signal transduction AL543_02815 PF05547 Immune inhibitor A peptidase M6 AL543_02815 PF00801 PKD domain AL543_02835 PF01032 FecCD transport family AL543_02840 PF01032 FecCD transport family AL543_02845 PF00005 ABC transporter AL543_02850 PF12833 Helix-turn-helix domain AL543_02855 PF00593 TonB dependent receptor AL543_02855 PF07715 TonB-dependent Receptor Plug Domain AL543_02865 PF00871 Acetokinase family AL543_02875 PF01380 SIS domain AL543_02880 PF02378 Phosphotransferase system, EIIC AL543_02880 PF00367 phosphotransferase system, EIIB AL543_02885 PF01380 SIS domain AL543_02885 PF01418 Helix-turn-helix domain, rpiR family AL543_02890 PF02656 Domain of unknown function (DUF202) AL543_02905 PF01261 Xylose isomerase-like TIM barrel AL543_02910 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL543_02920 PF00596 Class II Aldolase and Adducin N-terminal domain AL543_02925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL543_02930 PF03611 PTS system sugar-specific permease component AL543_02935 PF00455 DeoR C terminal sensor domain AL543_02935 PF08220 DeoR-like helix-turn-helix domain AL543_02945 PF13358 DDE superfamily endonuclease AL543_02955 PF13358 DDE superfamily endonuclease AL543_02960 PF05025 RbsD / FucU transport protein family AL543_02965 PF00596 Class II Aldolase and Adducin N-terminal domain AL543_02980 PF02653 Branched-chain amino acid transport system / permease component AL543_02995 PF00873 AcrB/AcrD/AcrF family AL543_03025 PF18416 N-acetylglucosamine binding protein domain 2 AL543_03025 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL543_03030 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AL543_03040 PF12849 PBP superfamily domain AL543_03050 PF00773 RNB domain AL543_03050 PF08206 Ribonuclease B OB domain AL543_03050 PF00575 S1 RNA binding domain AL543_03055 PF03880 DbpA RNA binding domain AL543_03055 PF00271 Helicase conserved C-terminal domain AL543_03055 PF00270 DEAD/DEAH box helicase AL543_03065 PF00884 Sulfatase AL543_03070 PF00294 pfkB family carbohydrate kinase AL543_03085 PF13419 Haloacid dehalogenase-like hydrolase AL543_03105 PF00226 DnaJ domain AL543_03105 PF00684 DnaJ central domain AL543_03105 PF01556 DnaJ C terminal domain AL543_03115 PF00563 EAL domain AL543_03115 PF00498 FHA domain AL543_03115 PF00990 Diguanylate cyclase, GGDEF domain AL543_03120 PF07055 Enoyl reductase FAD binding domain AL543_03120 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL543_03120 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL543_03125 PF13472 GDSL-like Lipase/Acylhydrolase family AL543_03130 PF00005 ABC transporter AL543_03140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL543_03140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL543_03150 PF02626 Carboxyltransferase domain, subdomain A and B AL543_03155 PF02682 Carboxyltransferase domain, subdomain C and D AL543_03160 PF03746 LamB/YcsF family AL543_03165 PF16363 GDP-mannose 4,6 dehydratase AL543_03175 PF03222 Tryptophan/tyrosine permease family AL543_03185 PF04336 Acyl carrier protein phosphodiesterase AL543_03190 PF00270 DEAD/DEAH box helicase AL543_03190 PF00271 Helicase conserved C-terminal domain AL543_03200 PF00034 Cytochrome c AL543_03205 PF01212 Beta-eliminating lyase AL543_03210 PF00293 NUDIX domain AL543_03215 PF12592 Protein of unknown function (DUF3763) AL543_03215 PF07728 AAA domain (dynein-related subfamily) AL543_03215 PF17868 AAA lid domain AL543_03220 PF05762 VWA domain containing CoxE-like protein AL543_03230 PF00005 ABC transporter AL543_03235 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_03240 PF00528 Binding-protein-dependent transport system inner membrane component AL543_03245 PF00528 Binding-protein-dependent transport system inner membrane component AL543_03250 PF02634 FdhD/NarQ family AL543_03255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_03255 PF03466 LysR substrate binding domain AL543_03260 PF13358 DDE superfamily endonuclease AL543_03275 PF00384 Molybdopterin oxidoreductase AL543_03295 PF11756 Nitrous oxide-stimulated promoter AL543_03300 PF07690 Major Facilitator Superfamily AL543_03305 PF00085 Thioredoxin AL543_03310 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL543_03310 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL543_03320 PF00535 Glycosyl transferase family 2 AL543_03330 PF02754 Cysteine-rich domain AL543_03330 PF13183 4Fe-4S dicluster domain AL543_03335 PF00890 FAD binding domain AL543_03340 PF01266 FAD dependent oxidoreductase AL543_03340 PF04324 BFD-like [2Fe-2S] binding domain AL543_03350 PF00230 Major intrinsic protein AL543_03355 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL543_03355 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL543_03365 PF04363 Protein of unknown function (DUF496) AL543_03375 PF04337 Protein of unknown function, DUF480 AL543_03380 PF13358 DDE superfamily endonuclease AL543_03385 PF01541 GIY-YIG catalytic domain AL543_03395 PF13407 Periplasmic binding protein domain AL543_03400 PF00072 Response regulator receiver domain AL543_03400 PF00512 His Kinase A (phospho-acceptor) domain AL543_03400 PF09308 LuxQ, periplasmic AL543_03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_03420 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL543_03420 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL543_03430 PF00528 Binding-protein-dependent transport system inner membrane component AL543_03435 PF00005 ABC transporter AL543_03435 PF03459 TOBE domain AL543_03455 PF12805 FUSC-like inner membrane protein yccS AL543_03460 PF13361 UvrD-like helicase C-terminal domain AL543_03460 PF00580 UvrD/REP helicase N-terminal domain AL543_03460 PF12462 DNA helicase IV / RNA helicase N terminal AL543_03465 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL543_03465 PF03413 Peptidase propeptide and YPEB domain AL543_03465 PF01447 Thermolysin metallopeptidase, catalytic domain AL543_03465 PF07504 Fungalysin/Thermolysin Propeptide Motif AL543_03485 PF01219 Prokaryotic diacylglycerol kinase AL543_03490 PF13358 DDE superfamily endonuclease AL543_03500 PF00857 Isochorismatase family AL543_03505 PF02142 MGS-like domain AL543_03510 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL543_03515 PF01627 Hpt domain AL543_03515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_03515 PF00072 Response regulator receiver domain AL543_03515 PF00512 His Kinase A (phospho-acceptor) domain AL543_03515 PF00672 HAMP domain AL543_03520 PF00224 Pyruvate kinase, barrel domain AL543_03520 PF02887 Pyruvate kinase, alpha/beta domain AL543_03525 PF07690 Major Facilitator Superfamily AL543_03540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_03540 PF02743 Cache domain AL543_03540 PF00512 His Kinase A (phospho-acceptor) domain AL543_03545 PF00072 Response regulator receiver domain AL543_03545 PF14532 Sigma-54 interaction domain AL543_03545 PF02954 Bacterial regulatory protein, Fis family AL543_03560 PF06483 Chitinase C AL543_03560 PF00704 Glycosyl hydrolases family 18 AL543_03565 PF00483 Nucleotidyl transferase AL543_03570 PF17158 Membrane-associated sensor, integral membrane domain AL543_03570 PF00990 Diguanylate cyclase, GGDEF domain AL543_03585 PF07549 SecD/SecF GG Motif AL543_03585 PF13721 SecD export protein N-terminal TM region AL543_03585 PF02355 Protein export membrane protein AL543_03590 PF02355 Protein export membrane protein AL543_03590 PF07549 SecD/SecF GG Motif AL543_03595 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL543_03600 PF02378 Phosphotransferase system, EIIC AL543_03605 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AL543_03615 PF02838 Glycosyl hydrolase family 20, domain 2 AL543_03615 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL543_03615 PF00728 Glycosyl hydrolase family 20, catalytic domain AL543_03615 PF03173 Putative carbohydrate binding domain AL543_03620 PF00106 short chain dehydrogenase AL543_03625 PF02803 Thiolase, C-terminal domain AL543_03625 PF00108 Thiolase, N-terminal domain AL543_03635 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL543_03645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_03645 PF03466 LysR substrate binding domain AL543_03665 PF00263 Bacterial type II and III secretion system protein AL543_03665 PF13629 Pilus formation protein N terminal region AL543_03665 PF04972 BON domain AL543_03680 PF00437 Type II/IV secretion system protein AL543_03720 PF08402 TOBE domain AL543_03720 PF00005 ABC transporter AL543_03725 PF00528 Binding-protein-dependent transport system inner membrane component AL543_03735 PF07690 Major Facilitator Superfamily AL543_03740 PF07730 Histidine kinase AL543_03740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_03740 PF05231 MASE1 AL543_03745 PF00072 Response regulator receiver domain AL543_03745 PF00196 Bacterial regulatory proteins, luxR family AL543_03750 PF01966 HD domain AL543_03760 PF03264 NapC/NirT cytochrome c family, N-terminal region AL543_03765 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL543_03770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL543_03770 PF01568 Molydopterin dinucleotide binding domain AL543_03770 PF00384 Molybdopterin oxidoreductase AL543_03780 PF13187 4Fe-4S dicluster domain AL543_03780 PF00037 4Fe-4S binding domain AL543_03780 PF12800 4Fe-4S binding domain AL543_03785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_03785 PF07730 Histidine kinase AL543_03785 PF00672 HAMP domain AL543_03785 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL543_03790 PF00072 Response regulator receiver domain AL543_03790 PF00196 Bacterial regulatory proteins, luxR family AL543_03795 PF03315 Serine dehydratase beta chain AL543_03795 PF03313 Serine dehydratase alpha chain AL543_03800 PF03606 C4-dicarboxylate anaerobic carrier AL543_03805 PF12729 Four helix bundle sensory module for signal transduction AL543_03805 PF00672 HAMP domain AL543_03805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_03810 PF13419 Haloacid dehalogenase-like hydrolase AL543_03815 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL543_03815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL543_03820 PF00691 OmpA family AL543_03825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_03825 PF17200 Single Cache domain 2 AL543_03825 PF00672 HAMP domain AL543_03830 PF01266 FAD dependent oxidoreductase AL543_03830 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL543_03885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL543_03885 PF00529 HlyD membrane-fusion protein of T1SS AL543_03890 PF03466 LysR substrate binding domain AL543_03890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_03895 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_03895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL543_03910 PF04143 Sulphur transport AL543_03925 PF00873 AcrB/AcrD/AcrF family AL543_03930 PF01797 Transposase IS200 like AL543_03935 PF00881 Nitroreductase family AL543_03945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_03945 PF03466 LysR substrate binding domain AL543_03955 PF06942 GlpM protein AL543_03980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL543_03980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL543_04010 PF02779 Transketolase, pyrimidine binding domain AL543_04010 PF02780 Transketolase, C-terminal domain AL543_04010 PF00456 Transketolase, thiamine diphosphate binding domain AL543_04015 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL543_04025 PF04198 Putative sugar-binding domain AL543_04030 PF08329 Chitinase A, N-terminal domain AL543_04030 PF00704 Glycosyl hydrolases family 18 AL543_04035 PF00581 Rhodanese-like domain AL543_04045 PF00899 ThiF family AL543_04050 PF03453 MoeA N-terminal region (domain I and II) AL543_04050 PF00994 Probable molybdopterin binding domain AL543_04050 PF03454 MoeA C-terminal region (domain IV) AL543_04055 PF01227 GTP cyclohydrolase I AL543_04060 PF01625 Peptide methionine sulfoxide reductase AL543_04060 PF01641 SelR domain AL543_04065 PF01268 Formate--tetrahydrofolate ligase AL543_04070 PF01741 Large-conductance mechanosensitive channel, MscL AL543_04075 PF00465 Iron-containing alcohol dehydrogenase AL543_04095 PF13419 Haloacid dehalogenase-like hydrolase AL543_04100 PF01272 Transcription elongation factor, GreA/GreB, C-term AL543_04100 PF14760 Rnk N-terminus AL543_04105 PF13419 Haloacid dehalogenase-like hydrolase AL543_04115 PF00266 Aminotransferase class-V AL543_04125 PF00005 ABC transporter AL543_04130 PF00528 Binding-protein-dependent transport system inner membrane component AL543_04135 PF07702 UTRA domain AL543_04135 PF00392 Bacterial regulatory proteins, gntR family AL543_04145 PF00854 POT family AL543_04170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_04175 PF00528 Binding-protein-dependent transport system inner membrane component AL543_04180 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_04180 PF00528 Binding-protein-dependent transport system inner membrane component AL543_04185 PF00005 ABC transporter AL543_04185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_04195 PF03479 Plants and Prokaryotes Conserved (PCC) domain AL543_04195 PF12804 MobA-like NTP transferase domain AL543_04195 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_04210 PF02798 Glutathione S-transferase, N-terminal domain AL543_04210 PF00043 Glutathione S-transferase, C-terminal domain AL543_04230 PF03061 Thioesterase superfamily AL543_04240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_04240 PF12793 Sugar transport-related sRNA regulator N-term AL543_04250 PF03466 LysR substrate binding domain AL543_04250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_04255 PF13607 Succinyl-CoA ligase like flavodoxin domain AL543_04255 PF00583 Acetyltransferase (GNAT) family AL543_04255 PF13380 CoA binding domain AL543_04265 PF07478 D-ala D-ala ligase C-terminus AL543_04265 PF01820 D-ala D-ala ligase N-terminus AL543_04275 PF01253 Translation initiation factor SUI1 AL543_04280 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AL543_04280 PF01648 4'-phosphopantetheinyl transferase superfamily AL543_04285 PF00005 ABC transporter AL543_04285 PF00664 ABC transporter transmembrane region AL543_04290 PF00005 ABC transporter AL543_04290 PF00664 ABC transporter transmembrane region AL543_04295 PF13193 AMP-binding enzyme C-terminal domain AL543_04295 PF00501 AMP-binding enzyme AL543_04300 PF00425 chorismate binding enzyme AL543_04305 PF00975 Thioesterase domain AL543_04315 PF00668 Condensation domain AL543_04315 PF00501 AMP-binding enzyme AL543_04315 PF13193 AMP-binding enzyme C-terminal domain AL543_04315 PF00550 Phosphopantetheine attachment site AL543_04320 PF00501 AMP-binding enzyme AL543_04320 PF00668 Condensation domain AL543_04320 PF08242 Methyltransferase domain AL543_04320 PF00550 Phosphopantetheine attachment site AL543_04325 PF07690 Major Facilitator Superfamily AL543_04330 PF00593 TonB dependent receptor AL543_04330 PF07715 TonB-dependent Receptor Plug Domain AL543_04395 PF03701 Uncharacterised protein family (UPF0181) AL543_04410 PF00486 Transcriptional regulatory protein, C terminal AL543_04410 PF00072 Response regulator receiver domain AL543_04420 PF02233 NAD(P) transhydrogenase beta subunit AL543_04425 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL543_04425 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL543_04425 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL543_04440 PF00072 Response regulator receiver domain AL543_04440 PF00990 Diguanylate cyclase, GGDEF domain AL543_04460 PF00990 Diguanylate cyclase, GGDEF domain AL543_04460 PF17158 Membrane-associated sensor, integral membrane domain AL543_04495 PF03831 PhnA domain AL543_04495 PF08274 PhnA Zinc-Ribbon AL543_04505 PF03741 Integral membrane protein TerC family AL543_04510 PF00149 Calcineurin-like phosphoesterase AL543_04510 PF02872 5'-nucleotidase, C-terminal domain AL543_04515 PF11398 Protein of unknown function (DUF2813) AL543_04520 PF06496 Protein of unknown function (DUF1097) AL543_04525 PF03466 LysR substrate binding domain AL543_04525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_04530 PF01226 Formate/nitrite transporter AL543_04535 PF04264 YceI-like domain AL543_04540 PF01292 Prokaryotic cytochrome b561 AL543_04550 PF03707 Bacterial signalling protein N terminal repeat AL543_04550 PF00990 Diguanylate cyclase, GGDEF domain AL543_04550 PF00563 EAL domain AL543_04555 PF00672 HAMP domain AL543_04555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_04555 PF02743 Cache domain AL543_04560 PF02743 Cache domain AL543_04560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_04560 PF00672 HAMP domain AL543_04575 PF07646 Kelch motif AL543_04580 PF01344 Kelch motif AL543_04585 PF01418 Helix-turn-helix domain, rpiR family AL543_04585 PF01380 SIS domain AL543_04590 PF00701 Dihydrodipicolinate synthetase family AL543_04595 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL543_04600 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL543_04605 PF03480 Bacterial extracellular solute-binding protein, family 7 AL543_04615 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AL543_04620 PF00480 ROK family AL543_04625 PF01979 Amidohydrolase family AL543_04630 PF13358 DDE superfamily endonuclease AL543_04640 PF13358 DDE superfamily endonuclease AL543_04650 PF01926 50S ribosome-binding GTPase AL543_04655 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL543_04655 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL543_04660 PF00654 Voltage gated chloride channel AL543_04675 PF00155 Aminotransferase class I and II AL543_04680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_04680 PF00072 Response regulator receiver domain AL543_04685 PF13476 AAA domain AL543_04690 PF12320 Type 5 capsule protein repressor C-terminal domain AL543_04690 PF00149 Calcineurin-like phosphoesterase AL543_04695 PF00356 Bacterial regulatory proteins, lacI family AL543_04695 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL543_04700 PF00381 PTS HPr component phosphorylation site AL543_04700 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL543_04705 PF00294 pfkB family carbohydrate kinase AL543_04710 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL543_04710 PF02378 Phosphotransferase system, EIIC AL543_04715 PF12792 CSS motif domain associated with EAL AL543_04715 PF00563 EAL domain AL543_04720 PF08443 RimK-like ATP-grasp domain AL543_04720 PF18030 RimK PreATP-grasp domain AL543_04725 PF00155 Aminotransferase class I and II AL543_04735 PF03477 ATP cone domain AL543_04735 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL543_04745 PF12833 Helix-turn-helix domain AL543_04745 PF02311 AraC-like ligand binding domain AL543_04755 PF13358 DDE superfamily endonuclease AL543_04815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_04820 PF01699 Sodium/calcium exchanger protein AL543_04825 PF04229 GrpB protein AL543_04845 PF13302 Acetyltransferase (GNAT) domain AL543_04870 PF13358 DDE superfamily endonuclease AL543_04925 PF02567 Phenazine biosynthesis-like protein AL543_05030 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL543_05120 PF01906 Putative heavy-metal-binding AL543_05140 PF01906 Putative heavy-metal-binding AL543_05155 PF13358 DDE superfamily endonuclease AL543_05200 PF09905 DNA-binding protein VF530 AL543_05205 PF01906 Putative heavy-metal-binding AL543_05215 PF01555 DNA methylase AL543_05220 PF04229 GrpB protein AL543_05255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_05270 PF12464 Maltose acetyltransferase AL543_05270 PF14602 Hexapeptide repeat of succinyl-transferase AL543_05280 PF01381 Helix-turn-helix AL543_05285 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB AL543_05290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_05295 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AL543_05300 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL543_05360 PF13302 Acetyltransferase (GNAT) domain AL543_05365 PF02048 Heat-stable enterotoxin ST AL543_05380 PF13302 Acetyltransferase (GNAT) domain AL543_05450 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AL543_05490 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AL543_05495 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AL543_05545 PF02810 SEC-C motif AL543_05545 PF07517 SecA DEAD-like domain AL543_05545 PF01043 SecA preprotein cross-linking domain AL543_05545 PF07516 SecA Wing and Scaffold domain AL543_05550 PF01872 RibD C-terminal domain AL543_05550 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL543_05565 PF04229 GrpB protein AL543_05575 PF13302 Acetyltransferase (GNAT) domain AL543_05620 PF07517 SecA DEAD-like domain AL543_05620 PF07516 SecA Wing and Scaffold domain AL543_05620 PF01043 SecA preprotein cross-linking domain AL543_05620 PF02810 SEC-C motif AL543_05625 PF00589 Phage integrase family AL543_05625 PF13495 Phage integrase, N-terminal SAM-like domain AL543_05630 PF01797 Transposase IS200 like AL543_05635 PF00453 Ribosomal protein L20 AL543_05640 PF01632 Ribosomal protein L35 AL543_05645 PF05198 Translation initiation factor IF-3, N-terminal domain AL543_05645 PF00707 Translation initiation factor IF-3, C-terminal domain AL543_05650 PF03129 Anticodon binding domain AL543_05650 PF02824 TGS domain AL543_05650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL543_05650 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL543_05655 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL543_05655 PF01571 Aminomethyltransferase folate-binding domain AL543_05665 PF00464 Serine hydroxymethyltransferase AL543_05670 PF01597 Glycine cleavage H-protein AL543_05675 PF02347 Glycine cleavage system P-protein AL543_05680 PF17996 Carbohydrate esterase 2 N-terminal AL543_05680 PF13472 GDSL-like Lipase/Acylhydrolase family AL543_05685 PF00194 Eukaryotic-type carbonic anhydrase AL543_05700 PF07943 Penicillin-binding protein 5, C-terminal domain AL543_05700 PF00768 D-alanyl-D-alanine carboxypeptidase AL543_05705 PF09339 IclR helix-turn-helix domain AL543_05705 PF01614 Bacterial transcriptional regulator AL543_05710 PF00672 HAMP domain AL543_05710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_05710 PF12729 Four helix bundle sensory module for signal transduction AL543_05715 PF00005 ABC transporter AL543_05715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_05720 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_05720 PF00528 Binding-protein-dependent transport system inner membrane component AL543_05725 PF00528 Binding-protein-dependent transport system inner membrane component AL543_05730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_05740 PF04055 Radical SAM superfamily AL543_05740 PF13186 Iron-sulfur cluster-binding domain AL543_05745 PF00884 Sulfatase AL543_05750 PF16385 Domain of unknown function AL543_05750 PF00884 Sulfatase AL543_05755 PF00563 EAL domain AL543_05755 PF00990 Diguanylate cyclase, GGDEF domain AL543_05755 PF03707 Bacterial signalling protein N terminal repeat AL543_05760 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain AL543_05760 PF02278 Polysaccharide lyase family 8, super-sandwich domain AL543_05760 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain AL543_05765 PF17386 Lacto-N-biose phosphorylase C-terminal domain AL543_05765 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain AL543_05765 PF17385 Lacto-N-biose phosphorylase central domain AL543_05770 PF07470 Glycosyl Hydrolase Family 88 AL543_05780 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AL543_05780 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AL543_05785 PF01081 KDPG and KHG aldolase AL543_05790 PF00294 pfkB family carbohydrate kinase AL543_05795 PF04962 KduI/IolB family AL543_05805 PF00491 Arginase family AL543_05810 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL543_05810 PF17944 Arginine decarboxylase C-terminal helical extension AL543_05810 PF17810 Arginine decarboxylase helical bundle domain AL543_05835 PF00571 CBS domain AL543_05835 PF01769 Divalent cation transporter AL543_05835 PF03448 MgtE intracellular N domain AL543_05840 PF00696 Amino acid kinase family AL543_05840 PF13840 ACT domain AL543_05845 PF06339 Ectoine synthase AL543_05850 PF00202 Aminotransferase class-III AL543_05855 PF00583 Acetyltransferase (GNAT) family AL543_05860 PF12833 Helix-turn-helix domain AL543_05870 PF01554 MatE AL543_05880 PF01329 Pterin 4 alpha carbinolamine dehydratase AL543_05885 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL543_05890 PF13193 AMP-binding enzyme C-terminal domain AL543_05890 PF00501 AMP-binding enzyme AL543_05915 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AL543_05915 PF14602 Hexapeptide repeat of succinyl-transferase AL543_05915 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_05920 PF03471 Transporter associated domain AL543_05920 PF01595 Cyclin M transmembrane N-terminal domain AL543_05920 PF00571 CBS domain AL543_05925 PF02566 OsmC-like protein AL543_05930 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL543_05935 PF00563 EAL domain AL543_05935 PF00990 Diguanylate cyclase, GGDEF domain AL543_05935 PF08447 PAS fold AL543_05935 PF08448 PAS fold AL543_05940 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL543_05940 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL543_05955 PF13520 Amino acid permease AL543_05960 PF00990 Diguanylate cyclase, GGDEF domain AL543_05970 PF00072 Response regulator receiver domain AL543_05970 PF04397 LytTr DNA-binding domain AL543_05975 PF07694 5TMR of 5TMR-LYT AL543_05975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_05975 PF06580 Histidine kinase AL543_05990 PF02687 FtsX-like permease family AL543_05990 PF12704 MacB-like periplasmic core domain AL543_05995 PF00005 ABC transporter AL543_06005 PF00248 Aldo/keto reductase family AL543_06010 PF00128 Alpha amylase, catalytic domain AL543_06015 PF13358 DDE superfamily endonuclease AL543_06040 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL543_06040 PF04151 Bacterial pre-peptidase C-terminal domain AL543_06040 PF03413 Peptidase propeptide and YPEB domain AL543_06040 PF01447 Thermolysin metallopeptidase, catalytic domain AL543_06040 PF07504 Fungalysin/Thermolysin Propeptide Motif AL543_06050 PF03922 OmpW family AL543_06060 PF00768 D-alanyl-D-alanine carboxypeptidase AL543_06065 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL543_06065 PF01336 OB-fold nucleic acid binding domain AL543_06065 PF02811 PHP domain AL543_06065 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL543_06065 PF14579 Helix-hairpin-helix motif AL543_06070 PF01351 Ribonuclease HII AL543_06075 PF02684 Lipid-A-disaccharide synthetase AL543_06080 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL543_06080 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_06085 PF07977 FabA-like domain AL543_06090 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_06090 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL543_06095 PF03938 Outer membrane protein (OmpH-like) AL543_06100 PF07244 Surface antigen variable number repeat AL543_06100 PF01103 Surface antigen AL543_06105 PF17820 PDZ domain AL543_06105 PF02163 Peptidase family M50 AL543_06110 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL543_06110 PF13288 DXP reductoisomerase C-terminal domain AL543_06110 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL543_06120 PF01255 Putative undecaprenyl diphosphate synthase AL543_06125 PF01765 Ribosome recycling factor AL543_06130 PF00696 Amino acid kinase family AL543_06135 PF00889 Elongation factor TS AL543_06140 PF00318 Ribosomal protein S2 AL543_06145 PF00557 Metallopeptidase family M24 AL543_06150 PF01966 HD domain AL543_06150 PF01909 Nucleotidyltransferase domain AL543_06150 PF08335 GlnD PII-uridylyltransferase AL543_06155 PF11944 Protein of unknown function (DUF3461) AL543_06160 PF04608 Phosphatidylglycerophosphatase A AL543_06165 PF02769 AIR synthase related protein, C-terminal domain AL543_06165 PF00586 AIR synthase related protein, N-terminal domain AL543_06170 PF01029 NusB family AL543_06175 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL543_06180 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL543_06180 PF00925 GTP cyclohydrolase II AL543_06185 PF00677 Lumazine binding domain AL543_06190 PF01872 RibD C-terminal domain AL543_06190 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL543_06195 PF03477 ATP cone domain AL543_06200 PF00171 Aldehyde dehydrogenase family AL543_06205 PF00696 Amino acid kinase family AL543_06205 PF01472 PUA domain AL543_06210 PF07417 Sigma factor-binding transcriptional regulator Crl AL543_06220 PF00156 Phosphoribosyl transferase domain AL543_06225 PF00860 Permease family AL543_06230 PF01546 Peptidase family M20/M25/M40 AL543_06230 PF07687 Peptidase dimerisation domain AL543_06235 PF08443 RimK-like ATP-grasp domain AL543_06235 PF18030 RimK PreATP-grasp domain AL543_06240 PF08443 RimK-like ATP-grasp domain AL543_06240 PF18030 RimK PreATP-grasp domain AL543_06250 PF00209 Sodium:neurotransmitter symporter family AL543_06255 PF01590 GAF domain AL543_06255 PF00360 Phytochrome region AL543_06255 PF00990 Diguanylate cyclase, GGDEF domain AL543_06255 PF00563 EAL domain AL543_06265 PF00817 impB/mucB/samB family AL543_06265 PF11798 IMS family HHH motif AL543_06275 PF02424 ApbE family AL543_06285 PF00175 Oxidoreductase NAD-binding domain AL543_06285 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_06285 PF00970 Oxidoreductase FAD-binding domain AL543_06290 PF02508 Rnf-Nqr subunit, membrane protein AL543_06295 PF02508 Rnf-Nqr subunit, membrane protein AL543_06300 PF04205 FMN-binding domain AL543_06305 PF03116 NQR2, RnfD, RnfE family AL543_06310 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AL543_06310 PF11973 NQRA C-terminal domain AL543_06315 PF01722 BolA-like protein AL543_06320 PF05175 Methyltransferase small domain AL543_06330 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL543_06335 PF07690 Major Facilitator Superfamily AL543_06345 PF04542 Sigma-70 region 2 AL543_06345 PF04545 Sigma-70, region 4 AL543_06355 PF03502 Nucleoside-specific channel-forming protein, Tsx AL543_06360 PF02558 Ketopantoate reductase PanE/ApbA AL543_06360 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL543_06365 PF01965 DJ-1/PfpI family AL543_06370 PF00266 Aminotransferase class-V AL543_06375 PF02657 Fe-S metabolism associated domain AL543_06380 PF00899 ThiF family AL543_06385 PF06725 3D domain AL543_06385 PF03562 MltA specific insert domain AL543_06395 PF00583 Acetyltransferase (GNAT) family AL543_06395 PF00696 Amino acid kinase family AL543_06410 PF13538 UvrD-like helicase C-terminal domain AL543_06415 PF00580 UvrD/REP helicase N-terminal domain AL543_06415 PF12705 PD-(D/E)XK nuclease superfamily AL543_06415 PF13361 UvrD-like helicase C-terminal domain AL543_06420 PF17946 RecC C-terminal domain AL543_06435 PF07130 YebG protein AL543_06440 PF14602 Hexapeptide repeat of succinyl-transferase AL543_06440 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AL543_06445 PF01797 Transposase IS200 like AL543_06455 PF00583 Acetyltransferase (GNAT) family AL543_06460 PF18030 RimK PreATP-grasp domain AL543_06460 PF08443 RimK-like ATP-grasp domain AL543_06460 PF02080 TrkA-C domain AL543_06465 PF01544 CorA-like Mg2+ transporter protein AL543_06475 PF01588 Putative tRNA binding domain AL543_06480 PF00356 Bacterial regulatory proteins, lacI family AL543_06485 PF01609 Transposase DDE domain AL543_06485 PF13006 Insertion element 4 transposase N-terminal AL543_06490 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL543_06490 PF00703 Glycosyl hydrolases family 2 AL543_06490 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL543_06490 PF02929 Beta galactosidase small chain AL543_06490 PF16353 Domain of unknown function(DUF4981) AL543_06500 PF00072 Response regulator receiver domain AL543_06505 PF00501 AMP-binding enzyme AL543_06515 PF03466 LysR substrate binding domain AL543_06515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_06520 PF03764 Elongation factor G, domain IV AL543_06520 PF14492 Elongation Factor G, domain II AL543_06520 PF00679 Elongation factor G C-terminus AL543_06520 PF03144 Elongation factor Tu domain 2 AL543_06520 PF00009 Elongation factor Tu GTP binding domain AL543_06525 PF18073 Rubredoxin metal binding domain AL543_06545 PF18429 Domain of unknown function (DUF5609) AL543_06555 PF01048 Phosphorylase superfamily AL543_06560 PF01676 Metalloenzyme superfamily AL543_06565 PF02885 Glycosyl transferase family, helical bundle domain AL543_06565 PF00591 Glycosyl transferase family, a/b domain AL543_06565 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AL543_06570 PF01791 DeoC/LacD family aldolase AL543_06580 PF07662 Na+ dependent nucleoside transporter C-terminus AL543_06580 PF07670 Nucleoside recognition AL543_06580 PF01773 Na+ dependent nucleoside transporter N-terminus AL543_06585 PF01026 TatD related DNase AL543_06590 PF03883 Peroxide stress protein YaaA AL543_06595 PF01235 Sodium:alanine symporter family AL543_06610 PF03167 Uracil DNA glycosylase superfamily AL543_06615 PF01261 Xylose isomerase-like TIM barrel AL543_06620 PF01228 Glycine radical AL543_06625 PF14821 Threonine synthase N terminus AL543_06625 PF00291 Pyridoxal-phosphate dependent enzyme AL543_06630 PF08544 GHMP kinases C terminal AL543_06630 PF00288 GHMP kinases N terminal domain AL543_06635 PF00742 Homoserine dehydrogenase AL543_06635 PF03447 Homoserine dehydrogenase, NAD binding domain AL543_06635 PF00696 Amino acid kinase family AL543_06635 PF01842 ACT domain AL543_06635 PF13840 ACT domain AL543_06645 PF03737 Aldolase/RraA AL543_06655 PF00072 Response regulator receiver domain AL543_06655 PF00486 Transcriptional regulatory protein, C terminal AL543_06660 PF00512 His Kinase A (phospho-acceptor) domain AL543_06660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_06660 PF00072 Response regulator receiver domain AL543_06660 PF00989 PAS fold AL543_06660 PF01627 Hpt domain AL543_06660 PF18415 Histidine kinase receptor ArcB trans-membrane domain AL543_06665 PF01590 GAF domain AL543_06665 PF00990 Diguanylate cyclase, GGDEF domain AL543_06665 PF00360 Phytochrome region AL543_06665 PF00563 EAL domain AL543_06670 PF04055 Radical SAM superfamily AL543_06670 PF16199 Radical_SAM C-terminal domain AL543_06675 PF01493 GXGXG motif AL543_06675 PF00310 Glutamine amidotransferases class-II AL543_06675 PF04898 Glutamate synthase central domain AL543_06675 PF01645 Conserved region in glutamate synthase AL543_06680 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_06680 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL543_06685 PF01493 GXGXG motif AL543_06685 PF00310 Glutamine amidotransferases class-II AL543_06685 PF01645 Conserved region in glutamate synthase AL543_06685 PF04898 Glutamate synthase central domain AL543_06690 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_06690 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL543_06700 PF01048 Phosphorylase superfamily AL543_06710 PF01497 Periplasmic binding protein AL543_06715 PF03458 UPF0126 domain AL543_06720 PF03466 LysR substrate binding domain AL543_06720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_06725 PF01925 Sulfite exporter TauE/SafE AL543_06730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL543_06730 PF02142 MGS-like domain AL543_06730 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL543_06735 PF00117 Glutamine amidotransferase class-I AL543_06735 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL543_06740 PF01113 Dihydrodipicolinate reductase, N-terminus AL543_06740 PF05173 Dihydrodipicolinate reductase, C-terminus AL543_06750 PF00293 NUDIX domain AL543_06755 PF01043 SecA preprotein cross-linking domain AL543_06755 PF07516 SecA Wing and Scaffold domain AL543_06755 PF02810 SEC-C motif AL543_06755 PF07517 SecA DEAD-like domain AL543_06775 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL543_06780 PF00091 Tubulin/FtsZ family, GTPase domain AL543_06780 PF12327 FtsZ family, C-terminal domain AL543_06785 PF02491 SHS2 domain inserted in FTSA AL543_06790 PF08478 POTRA domain, FtsQ-type AL543_06790 PF03799 Cell division protein FtsQ AL543_06795 PF08245 Mur ligase middle domain AL543_06795 PF02875 Mur ligase family, glutamate ligase domain AL543_06795 PF01225 Mur ligase family, catalytic domain AL543_06800 PF03033 Glycosyltransferase family 28 N-terminal domain AL543_06800 PF04101 Glycosyltransferase family 28 C-terminal domain AL543_06805 PF01098 Cell cycle protein AL543_06810 PF02875 Mur ligase family, glutamate ligase domain AL543_06810 PF08245 Mur ligase middle domain AL543_06815 PF00953 Glycosyl transferase family 4 AL543_06815 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AL543_06820 PF02875 Mur ligase family, glutamate ligase domain AL543_06820 PF08245 Mur ligase middle domain AL543_06820 PF01225 Mur ligase family, catalytic domain AL543_06825 PF02875 Mur ligase family, glutamate ligase domain AL543_06825 PF01225 Mur ligase family, catalytic domain AL543_06825 PF08245 Mur ligase middle domain AL543_06830 PF00905 Penicillin binding protein transpeptidase domain AL543_06830 PF03717 Penicillin-binding Protein dimerisation domain AL543_06835 PF04999 Cell division protein FtsL AL543_06840 PF01795 MraW methylase family AL543_06850 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_06850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL543_06855 PF02817 e3 binding domain AL543_06855 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL543_06855 PF00364 Biotin-requiring enzyme AL543_06860 PF17831 Pyruvate dehydrogenase E1 component middle domain AL543_06860 PF00456 Transketolase, thiamine diphosphate binding domain AL543_06865 PF00392 Bacterial regulatory proteins, gntR family AL543_06865 PF07729 FCD domain AL543_06870 PF02872 5'-nucleotidase, C-terminal domain AL543_06870 PF00149 Calcineurin-like phosphoesterase AL543_06875 PF02833 DHHA2 domain AL543_06875 PF01368 DHH family AL543_06880 PF17768 RecJ OB domain AL543_06880 PF02272 DHHA1 domain AL543_06880 PF01368 DHH family AL543_06885 PF10411 Disulfide bond isomerase protein N-terminus AL543_06885 PF13098 Thioredoxin-like domain AL543_06890 PF02899 Phage integrase, N-terminal SAM-like domain AL543_06890 PF00589 Phage integrase family AL543_06895 PF00258 Flavodoxin AL543_06900 PF01510 N-acetylmuramoyl-L-alanine amidase AL543_06905 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL543_06905 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL543_06910 PF07963 Prokaryotic N-terminal methylation motif AL543_06910 PF00114 Pilin (bacterial filament) AL543_06915 PF00437 Type II/IV secretion system protein AL543_06915 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL543_06920 PF00482 Type II secretion system (T2SS), protein F AL543_06925 PF01478 Type IV leader peptidase family AL543_06925 PF06750 Bacterial Peptidase A24 N-terminal domain AL543_06930 PF01121 Dephospho-CoA kinase AL543_06935 PF07072 Cell division protein AL543_06940 PF03884 DNA gyrase inhibitor YacG AL543_06945 PF03989 DNA gyrase C-terminal domain, beta-propeller AL543_06945 PF00521 DNA gyrase/topoisomerase IV, subunit A AL543_06950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_06950 PF00986 DNA gyrase B subunit, carboxyl terminus AL543_06950 PF00204 DNA gyrase B AL543_06950 PF01751 Toprim domain AL543_06955 PF05728 Uncharacterised protein family (UPF0227) AL543_06960 PF00149 Calcineurin-like phosphoesterase AL543_06965 PF06853 Protein of unknown function (DUF1249) AL543_06970 PF00293 NUDIX domain AL543_06975 PF02321 Outer membrane efflux protein AL543_06980 PF00294 pfkB family carbohydrate kinase AL543_06980 PF01467 Cytidylyltransferase-like AL543_06985 PF03710 Glutamate-ammonia ligase adenylyltransferase AL543_06985 PF08335 GlnD PII-uridylyltransferase AL543_06990 PF00672 HAMP domain AL543_06990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_06995 PF07885 Ion channel AL543_07000 PF01928 CYTH domain AL543_07005 PF01865 Protein of unknown function DUF47 AL543_07010 PF01384 Phosphate transporter family AL543_07015 PF08239 Bacterial SH3 domain AL543_07025 PF13401 AAA domain AL543_07025 PF01471 Putative peptidoglycan binding domain AL543_07030 PF01966 HD domain AL543_07030 PF01743 Poly A polymerase head domain AL543_07030 PF12627 Probable RNA and SrmB- binding site of polymerase A AL543_07035 PF01212 Beta-eliminating lyase AL543_07040 PF03222 Tryptophan/tyrosine permease family AL543_07045 PF08543 Phosphomethylpyrimidine kinase AL543_07050 PF00113 Enolase, C-terminal TIM barrel domain AL543_07050 PF03952 Enolase, N-terminal domain AL543_07055 PF00117 Glutamine amidotransferase class-I AL543_07055 PF06418 CTP synthase N-terminus AL543_07065 PF03819 MazG nucleotide pyrophosphohydrolase domain AL543_07070 PF04607 Region found in RelA / SpoT proteins AL543_07070 PF13291 ACT domain AL543_07070 PF02824 TGS domain AL543_07075 PF05958 tRNA (Uracil-5-)-methyltransferase AL543_07075 PF01938 TRAM domain AL543_07080 PF01627 Hpt domain AL543_07080 PF00512 His Kinase A (phospho-acceptor) domain AL543_07080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_07080 PF00672 HAMP domain AL543_07080 PF00072 Response regulator receiver domain AL543_07080 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL543_07085 PF00990 Diguanylate cyclase, GGDEF domain AL543_07085 PF00563 EAL domain AL543_07100 PF01648 4'-phosphopantetheinyl transferase superfamily AL543_07105 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL543_07110 PF02565 Recombination protein O C terminal AL543_07110 PF11967 Recombination protein O N terminal AL543_07115 PF01926 50S ribosome-binding GTPase AL543_07115 PF07650 KH domain AL543_07120 PF14622 Ribonuclease-III-like AL543_07120 PF00035 Double-stranded RNA binding motif AL543_07125 PF10502 Signal peptidase, peptidase S26 AL543_07130 PF06421 GTP-binding protein LepA C-terminus AL543_07130 PF00679 Elongation factor G C-terminus AL543_07130 PF03144 Elongation factor Tu domain 2 AL543_07130 PF00009 Elongation factor Tu GTP binding domain AL543_07140 PF03888 MucB/RseB N-terminal domain AL543_07140 PF17188 MucB/RseB C-terminal domain AL543_07145 PF03873 Anti sigma-E protein RseA, C-terminal domain AL543_07145 PF03872 Anti sigma-E protein RseA, N-terminal domain AL543_07150 PF04542 Sigma-70 region 2 AL543_07150 PF08281 Sigma-70, region 4 AL543_07160 PF00890 FAD binding domain AL543_07160 PF02910 Fumarate reductase flavoprotein C-term AL543_07170 PF03937 Flavinator of succinate dehydrogenase AL543_07185 PF01494 FAD binding domain AL543_07190 PF01494 FAD binding domain AL543_07195 PF03695 Uncharacterised protein family (UPF0149) AL543_07200 PF05164 Cell division protein ZapA AL543_07210 PF01812 5-formyltetrahydrofolate cyclo-ligase family AL543_07215 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL543_07220 PF01842 ACT domain AL543_07220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL543_07220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL543_07225 PF10369 Small subunit of acetolactate synthase AL543_07230 PF00205 Thiamine pyrophosphate enzyme, central domain AL543_07230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL543_07230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL543_07235 PF00501 AMP-binding enzyme AL543_07240 PF03466 LysR substrate binding domain AL543_07240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_07250 PF01569 PAP2 superfamily AL543_07260 PF00682 HMGL-like AL543_07260 PF08502 LeuA allosteric (dimerisation) domain AL543_07265 PF00180 Isocitrate/isopropylmalate dehydrogenase AL543_07270 PF00330 Aconitase family (aconitate hydratase) AL543_07275 PF00694 Aconitase C-terminal domain AL543_07335 PF00072 Response regulator receiver domain AL543_07350 PF03739 Lipopolysaccharide export system permease LptF/LptG AL543_07355 PF03739 Lipopolysaccharide export system permease LptF/LptG AL543_07360 PF00883 Cytosol aminopeptidase family, catalytic domain AL543_07360 PF02789 Cytosol aminopeptidase family, N-terminal domain AL543_07365 PF04364 DNA polymerase III chi subunit, HolC AL543_07370 PF08264 Anticodon-binding domain of tRNA AL543_07370 PF10458 Valyl tRNA synthetase tRNA binding arm AL543_07370 PF00133 tRNA synthetases class I (I, L, M and V) AL543_07390 PF05987 Bacterial protein of unknown function (DUF898) AL543_07395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL543_07395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL543_07400 PF00849 RNA pseudouridylate synthase AL543_07405 PF18337 RapA N-terminal Tudor like domain AL543_07405 PF00176 SNF2 family N-terminal domain AL543_07405 PF12137 RNA polymerase recycling family C-terminal AL543_07405 PF00271 Helicase conserved C-terminal domain AL543_07405 PF18339 RapA N-terminal Tudor like domain 1 AL543_07415 PF02562 PhoH-like protein AL543_07415 PF13638 PIN domain AL543_07420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL543_07420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL543_07425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL543_07425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL543_07430 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL543_07430 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL543_07435 PF01042 Endoribonuclease L-PSP AL543_07440 PF01553 Acyltransferase AL543_07445 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL543_07450 PF01722 BolA-like protein AL543_07460 PF05494 MlaC protein AL543_07465 PF02470 MlaD protein AL543_07470 PF02405 Permease MlaE AL543_07475 PF00005 ABC transporter AL543_07485 PF01699 Sodium/calcium exchanger protein AL543_07490 PF00571 CBS domain AL543_07490 PF01380 SIS domain AL543_07505 PF03968 OstA-like protein AL543_07510 PF00005 ABC transporter AL543_07510 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL543_07515 PF04552 Sigma-54, DNA binding domain AL543_07515 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL543_07515 PF04963 Sigma-54 factor, core binding domain AL543_07520 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL543_07525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL543_07530 PF03668 P-loop ATPase protein family AL543_07535 PF00381 PTS HPr component phosphorylation site AL543_07540 PF01769 Divalent cation transporter AL543_07540 PF03448 MgtE intracellular N domain AL543_07540 PF00571 CBS domain AL543_07545 PF01523 Putative modulator of DNA gyrase AL543_07550 PF04751 Protein of unknown function (DUF615) AL543_07555 PF00005 ABC transporter AL543_07560 PF00528 Binding-protein-dependent transport system inner membrane component AL543_07570 PF02441 Flavoprotein AL543_07575 PF01225 Mur ligase family, catalytic domain AL543_07575 PF02875 Mur ligase family, glutamate ligase domain AL543_07575 PF08245 Mur ligase middle domain AL543_07585 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL543_07590 PF00719 Inorganic pyrophosphatase AL543_07600 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AL543_07605 PF04357 TamB, inner membrane protein subunit of TAM complex AL543_07610 PF17243 POTRA domain TamA domain 1 AL543_07610 PF07244 Surface antigen variable number repeat AL543_07610 PF01103 Surface antigen AL543_07615 PF01625 Peptide methionine sulfoxide reductase AL543_07620 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL543_07625 PF10795 Protein of unknown function (DUF2607) AL543_07635 PF00005 ABC transporter AL543_07660 PF00009 Elongation factor Tu GTP binding domain AL543_07665 PF01507 Phosphoadenosine phosphosulfate reductase family AL543_07670 PF14824 Sirohaem biosynthesis protein central AL543_07670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL543_07670 PF10414 Sirohaem synthase dimerisation region AL543_07675 PF02872 5'-nucleotidase, C-terminal domain AL543_07675 PF00149 Calcineurin-like phosphoesterase AL543_07685 PF03880 DbpA RNA binding domain AL543_07685 PF00271 Helicase conserved C-terminal domain AL543_07685 PF00270 DEAD/DEAH box helicase AL543_07690 PF13673 Acetyltransferase (GNAT) domain AL543_07695 PF00892 EamA-like transporter family AL543_07700 PF04225 Opacity-associated protein A LysM-like domain AL543_07700 PF08525 Opacity-associated protein A N-terminal motif AL543_07705 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL543_07705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL543_07715 PF01196 Ribosomal protein L17 AL543_07720 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL543_07720 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL543_07720 PF01000 RNA polymerase Rpb3/RpoA insert domain AL543_07725 PF01479 S4 domain AL543_07725 PF00163 Ribosomal protein S4/S9 N-terminal domain AL543_07730 PF00411 Ribosomal protein S11 AL543_07735 PF00416 Ribosomal protein S13/S18 AL543_07740 PF00444 Ribosomal protein L36 AL543_07745 PF00344 SecY translocase AL543_07750 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AL543_07755 PF00327 Ribosomal protein L30p/L7e AL543_07760 PF03719 Ribosomal protein S5, C-terminal domain AL543_07760 PF00333 Ribosomal protein S5, N-terminal domain AL543_07765 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL543_07770 PF00347 Ribosomal protein L6 AL543_07775 PF00410 Ribosomal protein S8 AL543_07780 PF00253 Ribosomal protein S14p/S29e AL543_07785 PF00673 ribosomal L5P family C-terminus AL543_07785 PF00281 Ribosomal protein L5 AL543_07790 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL543_07790 PF00467 KOW motif AL543_07795 PF00238 Ribosomal protein L14p/L23e AL543_07800 PF00366 Ribosomal protein S17 AL543_07805 PF00831 Ribosomal L29 protein AL543_07810 PF00252 Ribosomal protein L16p/L10e AL543_07815 PF07650 KH domain AL543_07815 PF00189 Ribosomal protein S3, C-terminal domain AL543_07820 PF00237 Ribosomal protein L22p/L17e AL543_07825 PF00203 Ribosomal protein S19 AL543_07830 PF00181 Ribosomal Proteins L2, RNA binding domain AL543_07830 PF03947 Ribosomal Proteins L2, C-terminal domain AL543_07835 PF00276 Ribosomal protein L23 AL543_07840 PF00573 Ribosomal protein L4/L1 family AL543_07845 PF00297 Ribosomal protein L3 AL543_07850 PF00338 Ribosomal protein S10p/S20e AL543_07855 PF00588 SpoU rRNA Methylase family AL543_07855 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL543_07860 PF00575 S1 RNA binding domain AL543_07860 PF00773 RNB domain AL543_07860 PF08206 Ribonuclease B OB domain AL543_07860 PF08461 Ribonuclease R winged-helix domain AL543_07860 PF17876 Cold shock domain AL543_07865 PF00884 Sulfatase AL543_07865 PF11893 Domain of unknown function (DUF3413) AL543_07870 PF08238 Sel1 repeat AL543_07875 PF00709 Adenylosuccinate synthetase AL543_07880 PF01112 Asparaginase AL543_07885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL543_07895 PF02254 TrkA-N domain AL543_07895 PF00999 Sodium/hydrogen exchanger family AL543_07900 PF02525 Flavodoxin-like fold AL543_07905 PF00005 ABC transporter AL543_07905 PF12848 ABC transporter AL543_07915 PF00561 alpha/beta hydrolase fold AL543_07920 PF06794 Uncharacterised protein family (UPF0270) AL543_07925 PF00485 Phosphoribulokinase / Uridine kinase family AL543_07930 PF13545 Crp-like helix-turn-helix domain AL543_07930 PF00027 Cyclic nucleotide-binding domain AL543_07940 PF00171 Aldehyde dehydrogenase family AL543_07945 PF04958 Arginine N-succinyltransferase beta subunit AL543_07950 PF00202 Aminotransferase class-III AL543_07955 PF00117 Glutamine amidotransferase class-I AL543_07960 PF04055 Radical SAM superfamily AL543_07960 PF00919 Uncharacterized protein family UPF0004 AL543_07960 PF18693 TRAM domain AL543_07975 PF00579 tRNA synthetases class I (W and Y) AL543_07980 PF13419 Haloacid dehalogenase-like hydrolase AL543_07985 PF00834 Ribulose-phosphate 3 epimerase family AL543_07990 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL543_08000 PF01761 3-dehydroquinate synthase AL543_08005 PF01202 Shikimate kinase AL543_08010 PF00263 Bacterial type II and III secretion system protein AL543_08010 PF03958 Bacterial type II/III secretion system short domain AL543_08010 PF07660 Secretin and TonB N terminus short domain AL543_08010 PF11741 AMIN domain AL543_08035 PF00912 Transglycosylase AL543_08035 PF17092 Penicillin-binding protein OB-like domain AL543_08035 PF00905 Penicillin binding protein transpeptidase domain AL543_08040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_08040 PF03466 LysR substrate binding domain AL543_08045 PF00462 Glutaredoxin AL543_08045 PF08534 Redoxin AL543_08050 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_08050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL543_08060 PF14698 Argininosuccinate lyase C-terminal AL543_08060 PF00206 Lyase AL543_08065 PF00764 Arginosuccinate synthase AL543_08070 PF00696 Amino acid kinase family AL543_08075 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL543_08075 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL543_08080 PF07687 Peptidase dimerisation domain AL543_08080 PF01546 Peptidase family M20/M25/M40 AL543_08085 PF00311 Phosphoenolpyruvate carboxylase AL543_08095 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_08095 PF06426 Serine acetyltransferase, N-terminal AL543_08100 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL543_08100 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL543_08105 PF02556 Preprotein translocase subunit SecB AL543_08110 PF00581 Rhodanese-like domain AL543_08115 PF00152 tRNA synthetases class II (D, K and N) AL543_08120 PF00890 FAD binding domain AL543_08120 PF02910 Fumarate reductase flavoprotein C-term AL543_08125 PF13183 4Fe-4S dicluster domain AL543_08125 PF13085 2Fe-2S iron-sulfur cluster binding domain AL543_08130 PF02300 Fumarate reductase subunit C AL543_08135 PF02313 Fumarate reductase subunit D AL543_08140 PF01132 Elongation factor P (EF-P) OB domain AL543_08140 PF08207 Elongation factor P (EF-P) KOW-like domain AL543_08140 PF09285 Elongation factor P, C-terminal AL543_08145 PF04055 Radical SAM superfamily AL543_08165 PF00118 TCP-1/cpn60 chaperonin family AL543_08170 PF00166 Chaperonin 10 Kd subunit AL543_08175 PF00455 DeoR C terminal sensor domain AL543_08175 PF08220 DeoR-like helix-turn-helix domain AL543_08195 PF00121 Triosephosphate isomerase AL543_08205 PF03737 Aldolase/RraA AL543_08210 PF01040 UbiA prenyltransferase family AL543_08215 PF00004 ATPase family associated with various cellular activities (AAA) AL543_08215 PF07724 AAA domain (Cdc48 subfamily) AL543_08215 PF10431 C-terminal, D2-small domain, of ClpB protein AL543_08220 PF00227 Proteasome subunit AL543_08230 PF00356 Bacterial regulatory proteins, lacI family AL543_08235 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL543_08235 PF00271 Helicase conserved C-terminal domain AL543_08235 PF00270 DEAD/DEAH box helicase AL543_08235 PF17764 3′ DNA-binding domain (3′BD) AL543_08235 PF18074 Primosomal protein N C-terminal domain AL543_08240 PF01197 Ribosomal protein L31 AL543_08245 PF00390 Malic enzyme, N-terminal domain AL543_08245 PF03949 Malic enzyme, NAD binding domain AL543_08250 PF01340 Met Apo-repressor, MetJ AL543_08255 PF01053 Cys/Met metabolism PLP-dependent enzyme AL543_08260 PF00696 Amino acid kinase family AL543_08260 PF00742 Homoserine dehydrogenase AL543_08260 PF03447 Homoserine dehydrogenase, NAD binding domain AL543_08265 PF02219 Methylenetetrahydrofolate reductase AL543_08270 PF06005 Cell division protein ZapB AL543_08275 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AL543_08280 PF00365 Phosphofructokinase AL543_08285 PF01545 Cation efflux family AL543_08285 PF16916 Dimerisation domain of Zinc Transporter AL543_08295 PF00486 Transcriptional regulatory protein, C terminal AL543_08295 PF00072 Response regulator receiver domain AL543_08300 PF00512 His Kinase A (phospho-acceptor) domain AL543_08300 PF16527 Two-component sensor protein CpxA, periplasmic domain AL543_08300 PF00672 HAMP domain AL543_08300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_08305 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL543_08305 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL543_08310 PF00588 SpoU rRNA Methylase family AL543_08315 PF04186 FxsA cytoplasmic membrane protein AL543_08320 PF10415 Fumarase C C-terminus AL543_08320 PF00206 Lyase AL543_08325 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL543_08330 PF11412 Disulphide bond corrector protein DsbC AL543_08330 PF02683 Cytochrome C biogenesis protein transmembrane region AL543_08335 PF00072 Response regulator receiver domain AL543_08335 PF00196 Bacterial regulatory proteins, luxR family AL543_08340 PF00999 Sodium/hydrogen exchanger family AL543_08340 PF02080 TrkA-C domain AL543_08340 PF03471 Transporter associated domain AL543_08350 PF00474 Sodium:solute symporter family AL543_08355 PF02592 Putative vitamin uptake transporter AL543_08360 PF00625 Guanylate kinase AL543_08365 PF01192 RNA polymerase Rpb6 AL543_08370 PF02824 TGS domain AL543_08370 PF13291 ACT domain AL543_08370 PF04607 Region found in RelA / SpoT proteins AL543_08375 PF00271 Helicase conserved C-terminal domain AL543_08375 PF17191 RecG wedge domain AL543_08375 PF00270 DEAD/DEAH box helicase AL543_08380 PF00860 Permease family AL543_08385 PF00672 HAMP domain AL543_08385 PF00512 His Kinase A (phospho-acceptor) domain AL543_08385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_08390 PF00072 Response regulator receiver domain AL543_08390 PF00486 Transcriptional regulatory protein, C terminal AL543_08395 PF01915 Glycosyl hydrolase family 3 C-terminal domain AL543_08395 PF00933 Glycosyl hydrolase family 3 N terminal domain AL543_08400 PF02653 Branched-chain amino acid transport system / permease component AL543_08405 PF00005 ABC transporter AL543_08420 PF01272 Transcription elongation factor, GreA/GreB, C-term AL543_08420 PF03449 Transcription elongation factor, N-terminal AL543_08425 PF00575 S1 RNA binding domain AL543_08425 PF09371 Tex-like protein N-terminal domain AL543_08425 PF17674 HHH domain AL543_08425 PF16921 Tex protein YqgF-like domain AL543_08435 PF00561 alpha/beta hydrolase fold AL543_08440 PF00156 Phosphoribosyl transferase domain AL543_08445 PF01106 NifU-like domain AL543_08445 PF01521 Iron-sulphur cluster biosynthesis AL543_08450 PF00293 NUDIX domain AL543_08455 PF00459 Inositol monophosphatase family AL543_08460 PF01203 Type II secretion system (T2SS), protein N AL543_08465 PF04612 Type II secretion system (T2SS), protein M AL543_08470 PF05134 Type II secretion system (T2SS), protein L AL543_08470 PF12693 GspL periplasmic domain AL543_08475 PF03934 Type II secretion system (T2SS), protein K AL543_08480 PF11612 Type II secretion system (T2SS), protein J AL543_08480 PF07963 Prokaryotic N-terminal methylation motif AL543_08485 PF02501 Type II secretion system (T2SS), protein I AL543_08485 PF07963 Prokaryotic N-terminal methylation motif AL543_08490 PF12019 Type II transport protein GspH AL543_08495 PF07963 Prokaryotic N-terminal methylation motif AL543_08495 PF08334 Type II secretion system (T2SS), protein G AL543_08500 PF00482 Type II secretion system (T2SS), protein F AL543_08505 PF00437 Type II/IV secretion system protein AL543_08510 PF03958 Bacterial type II/III secretion system short domain AL543_08510 PF00263 Bacterial type II and III secretion system protein AL543_08515 PF11356 Type II secretion system protein C AL543_08520 PF01479 S4 domain AL543_08525 PF01430 Hsp33 protein AL543_08530 PF01293 Phosphoenolpyruvate carboxykinase AL543_08540 PF09500 Putative thioesterase (yiiD_Cterm) AL543_08540 PF00583 Acetyltransferase (GNAT) family AL543_08545 PF02580 D-Tyr-tRNA(Tyr) deacylase AL543_08550 PF03631 Virulence factor BrkB AL543_08570 PF00120 Glutamine synthetase, catalytic domain AL543_08570 PF03951 Glutamine synthetase, beta-Grasp domain AL543_08580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_08580 PF00989 PAS fold AL543_08580 PF00512 His Kinase A (phospho-acceptor) domain AL543_08585 PF00072 Response regulator receiver domain AL543_08585 PF00158 Sigma-54 interaction domain AL543_08585 PF02954 Bacterial regulatory protein, Fis family AL543_08590 PF03707 Bacterial signalling protein N terminal repeat AL543_08590 PF13188 PAS domain AL543_08590 PF00990 Diguanylate cyclase, GGDEF domain AL543_08590 PF00563 EAL domain AL543_08595 PF00962 Adenosine/AMP deaminase AL543_08605 PF13358 DDE superfamily endonuclease AL543_08615 PF13358 DDE superfamily endonuclease AL543_08680 PF01177 Asp/Glu/Hydantoin racemase AL543_08685 PF00082 Subtilase family AL543_08685 PF05922 Peptidase inhibitor I9 AL543_08685 PF04151 Bacterial pre-peptidase C-terminal domain AL543_08690 PF07715 TonB-dependent Receptor Plug Domain AL543_08690 PF00593 TonB dependent receptor AL543_08695 PF05958 tRNA (Uracil-5-)-methyltransferase AL543_08730 PF04002 RadC-like JAB domain AL543_08745 PF02384 N-6 DNA Methylase AL543_08745 PF12161 HsdM N-terminal domain AL543_08750 PF01420 Type I restriction modification DNA specificity domain AL543_08765 PF12008 Type I restriction and modification enzyme - subunit R C terminal AL543_08765 PF18766 SWI2/SNF2 ATPase AL543_08765 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL543_08775 PF07226 Protein of unknown function (DUF1422) AL543_08780 PF00440 Bacterial regulatory proteins, tetR family AL543_08785 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_08785 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL543_08790 PF04545 Sigma-70, region 4 AL543_08790 PF04542 Sigma-70 region 2 AL543_08790 PF00140 Sigma-70 factor, region 1.2 AL543_08795 PF18075 FtsX extracellular domain AL543_08800 PF00005 ABC transporter AL543_08805 PF00448 SRP54-type protein, GTPase domain AL543_08805 PF02881 SRP54-type protein, helical bundle domain AL543_08845 PF00210 Ferritin-like domain AL543_08850 PF00563 EAL domain AL543_08850 PF08668 HDOD domain AL543_08855 PF01810 LysE type translocator AL543_08860 PF12146 Serine aminopeptidase, S33 AL543_08880 PF08495 FIST N domain AL543_08880 PF10442 FIST C domain AL543_08880 PF00563 EAL domain AL543_08880 PF00990 Diguanylate cyclase, GGDEF domain AL543_08885 PF13419 Haloacid dehalogenase-like hydrolase AL543_08890 PF02899 Phage integrase, N-terminal SAM-like domain AL543_08890 PF00589 Phage integrase family AL543_08895 PF04340 Protein of unknown function, DUF484 AL543_08900 PF01678 Diaminopimelate epimerase AL543_08905 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL543_08905 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL543_08915 PF01491 Frataxin-like domain AL543_08920 PF12633 Adenylate cyclase NT domain AL543_08920 PF01295 Adenylate cyclase, class-I AL543_08930 PF03900 Porphobilinogen deaminase, C-terminal domain AL543_08930 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL543_08935 PF02602 Uroporphyrinogen-III synthase HemD AL543_08940 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AL543_08945 PF07219 HemY protein N-terminus AL543_08950 PF06969 HemN C-terminal domain AL543_08950 PF04055 Radical SAM superfamily AL543_08955 PF10675 Protein of unknown function (DUF2489) AL543_08960 PF04220 Der GTPase activator (YihI) AL543_08970 PF00034 Cytochrome c AL543_08975 PF01926 50S ribosome-binding GTPase AL543_08985 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL543_08985 PF01612 3'-5' exonuclease AL543_08985 PF01367 5'-3' exonuclease, C-terminal SAM fold AL543_08985 PF00476 DNA polymerase family A AL543_08990 PF00583 Acetyltransferase (GNAT) family AL543_08995 PF00490 Delta-aminolevulinic acid dehydratase AL543_09000 PF01026 TatD related DNase AL543_09010 PF00581 Rhodanese-like domain AL543_09015 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL543_09015 PF01694 Rhomboid family AL543_09020 PF03748 Flagellar basal body-associated protein FliL AL543_09030 PF04345 Chorismate lyase AL543_09035 PF01040 UbiA prenyltransferase family AL543_09040 PF01553 Acyltransferase AL543_09045 PF01726 LexA DNA binding domain AL543_09045 PF00717 Peptidase S24-like AL543_09055 PF01554 MatE AL543_09060 PF00902 Sec-independent protein translocase protein (TatC) AL543_09065 PF02416 mttA/Hcf106 family AL543_09070 PF02416 mttA/Hcf106 family AL543_09075 PF03109 ABC1 family AL543_09080 PF02036 SCP-2 sterol transfer family AL543_09085 PF01209 ubiE/COQ5 methyltransferase family AL543_09090 PF02646 RmuC family AL543_09100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_09100 PF08447 PAS fold AL543_09150 PF13401 AAA domain AL543_09150 PF11426 Tn7 transposition regulator TnsC AL543_09160 PF13358 DDE superfamily endonuclease AL543_09170 PF08722 TnsA endonuclease N terminal AL543_09170 PF08721 TnsA endonuclease C terminal AL543_09180 PF10625 Universal stress protein B (UspB) AL543_09185 PF00210 Ferritin-like domain AL543_09195 PF00582 Universal stress protein family AL543_09200 PF00892 EamA-like transporter family AL543_09210 PF04445 Putative SAM-dependent methyltransferase AL543_09215 PF00563 EAL domain AL543_09215 PF00990 Diguanylate cyclase, GGDEF domain AL543_09215 PF08448 PAS fold AL543_09220 PF01037 Lrp/AsnC ligand binding domain AL543_09230 PF07690 Major Facilitator Superfamily AL543_09235 PF03466 LysR substrate binding domain AL543_09235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_09240 PF00557 Metallopeptidase family M24 AL543_09240 PF01321 Creatinase/Prolidase N-terminal domain AL543_09240 PF01321 Creatinase/Prolidase N-terminal domain AL543_09240 PF00557 Metallopeptidase family M24 AL543_09245 PF06968 Biotin and Thiamin Synthesis associated domain AL543_09245 PF04055 Radical SAM superfamily AL543_09250 PF05690 Thiazole biosynthesis protein ThiG AL543_09255 PF02597 ThiS family AL543_09260 PF00899 ThiF family AL543_09265 PF02581 Thiamine monophosphate synthase AL543_09270 PF01964 Radical SAM ThiC family AL543_09270 PF13667 ThiC-associated domain AL543_09275 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL543_09290 PF13356 Arm DNA-binding domain AL543_09290 PF00589 Phage integrase family AL543_09300 PF01418 Helix-turn-helix domain, rpiR family AL543_09300 PF01380 SIS domain AL543_09305 PF13580 SIS domain AL543_09310 PF00367 phosphotransferase system, EIIB AL543_09310 PF02378 Phosphotransferase system, EIIC AL543_09320 PF13358 DDE superfamily endonuclease AL543_09345 PF12161 HsdM N-terminal domain AL543_09345 PF02384 N-6 DNA Methylase AL543_09415 PF12724 Flavodoxin domain AL543_09420 PF02386 Cation transport protein AL543_09425 PF09186 Domain of unknown function (DUF1949) AL543_09425 PF01205 Uncharacterized protein family UPF0029 AL543_09430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL543_09430 PF00378 Enoyl-CoA hydratase/isomerase AL543_09430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL543_09435 PF00108 Thiolase, N-terminal domain AL543_09435 PF02803 Thiolase, C-terminal domain AL543_09440 PF03466 LysR substrate binding domain AL543_09440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_09445 PF07690 Major Facilitator Superfamily AL543_09450 PF12804 MobA-like NTP transferase domain AL543_09450 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_09455 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL543_09455 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL543_09460 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL543_09460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL543_09465 PF00231 ATP synthase AL543_09470 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL543_09470 PF00306 ATP synthase alpha/beta chain, C terminal domain AL543_09470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL543_09475 PF00213 ATP synthase delta (OSCP) subunit AL543_09480 PF00430 ATP synthase B/B' CF(0) AL543_09485 PF00137 ATP synthase subunit C AL543_09490 PF00119 ATP synthase A chain AL543_09495 PF03899 ATP synthase I chain AL543_09500 PF17762 HTH domain found in ParB protein AL543_09500 PF02195 ParB-like nuclease domain AL543_09505 PF13614 AAA domain AL543_09510 PF02527 rRNA small subunit methyltransferase G AL543_09515 PF01134 Glucose inhibited division protein A AL543_09515 PF13932 GidA associated domain AL543_09520 PF00258 Flavodoxin AL543_09535 PF01926 50S ribosome-binding GTPase AL543_09535 PF10396 GTP-binding protein TrmE N-terminus AL543_09535 PF12631 MnmE helical domain AL543_09540 PF14849 YidC periplasmic domain AL543_09540 PF02096 60Kd inner membrane protein AL543_09545 PF01809 Putative membrane protein insertion efficiency factor AL543_09550 PF00825 Ribonuclease P AL543_09555 PF00468 Ribosomal protein L34 AL543_09560 PF00005 ABC transporter AL543_09565 PF00528 Binding-protein-dependent transport system inner membrane component AL543_09570 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_09575 PF00308 Bacterial dnaA protein AL543_09575 PF08299 Bacterial dnaA protein helix-turn-helix AL543_09575 PF11638 DnaA N-terminal domain AL543_09580 PF00712 DNA polymerase III beta subunit, N-terminal domain AL543_09580 PF02768 DNA polymerase III beta subunit, C-terminal domain AL543_09580 PF02767 DNA polymerase III beta subunit, central domain AL543_09585 PF02463 RecF/RecN/SMC N terminal domain AL543_09590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_09590 PF00986 DNA gyrase B subunit, carboxyl terminus AL543_09590 PF01751 Toprim domain AL543_09590 PF00204 DNA gyrase B AL543_09590 PF18053 DNA gyrase B subunit insert domain AL543_09605 PF00011 Hsp20/alpha crystallin family AL543_09610 PF00155 Aminotransferase class I and II AL543_09615 PF05746 DALR anticodon binding domain AL543_09615 PF02092 Glycyl-tRNA synthetase beta subunit AL543_09620 PF02091 Glycyl-tRNA synthetase alpha subunit AL543_09625 PF01169 Uncharacterized protein family UPF0016 AL543_09635 PF01206 Sulfurtransferase TusA AL543_09645 PF03466 LysR substrate binding domain AL543_09645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_09650 PF00107 Zinc-binding dehydrogenase AL543_09650 PF08240 Alcohol dehydrogenase GroES-like domain AL543_09655 PF00291 Pyridoxal-phosphate dependent enzyme AL543_09655 PF00585 C-terminal regulatory domain of Threonine dehydratase AL543_09660 PF00920 Dehydratase family AL543_09665 PF01063 Amino-transferase class IV AL543_09675 PF00205 Thiamine pyrophosphate enzyme, central domain AL543_09675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL543_09675 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL543_09680 PF13335 Magnesium chelatase, subunit ChlI C-terminal AL543_09680 PF01078 Magnesium chelatase, subunit ChlI AL543_09685 PF01553 Acyltransferase AL543_09690 PF01323 DSBA-like thioredoxin domain AL543_09695 PF01636 Phosphotransferase enzyme family AL543_09700 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL543_09700 PF12801 4Fe-4S binding domain AL543_09700 PF13746 4Fe-4S dicluster domain AL543_09705 PF06288 Protein of unknown function (DUF1040) AL543_09715 PF07070 SpoOM protein AL543_09720 PF03006 Haemolysin-III related AL543_09730 PF02386 Cation transport protein AL543_09735 PF02080 TrkA-C domain AL543_09735 PF02254 TrkA-N domain AL543_09740 PF01029 NusB family AL543_09740 PF01189 16S rRNA methyltransferase RsmB/F AL543_09745 PF00551 Formyl transferase AL543_09745 PF02911 Formyl transferase, C-terminal domain AL543_09750 PF01327 Polypeptide deformylase AL543_09755 PF01476 LysM domain AL543_09760 PF02481 DNA recombination-mediator protein A AL543_09760 PF17782 DprA winged helix domain AL543_09765 PF04361 Protein of unknown function (DUF494) AL543_09770 PF01396 Topoisomerase DNA binding C4 zinc finger AL543_09775 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL543_09775 PF02222 ATP-grasp domain AL543_09780 PF00731 AIR carboxylase AL543_09785 PF01300 Telomere recombination AL543_09790 PF01218 Coproporphyrinogen III oxidase AL543_09795 PF01488 Shikimate / quinate 5-dehydrogenase AL543_09795 PF08501 Shikimate dehydrogenase substrate binding domain AL543_09795 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL543_09805 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_09850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_09850 PF03466 LysR substrate binding domain AL543_09855 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL543_09855 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL543_09860 PF04380 Membrane fusogenic activity AL543_09865 PF00873 AcrB/AcrD/AcrF family AL543_09870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL543_09875 PF00440 Bacterial regulatory proteins, tetR family AL543_09880 PF13361 UvrD-like helicase C-terminal domain AL543_09880 PF00580 UvrD/REP helicase N-terminal domain AL543_09885 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL543_09920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_09920 PF00005 ABC transporter AL543_09925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_09935 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_09935 PF00528 Binding-protein-dependent transport system inner membrane component AL543_10035 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_10035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL543_10040 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL543_10045 PF01432 Peptidase family M3 AL543_10050 PF13361 UvrD-like helicase C-terminal domain AL543_10050 PF00580 UvrD/REP helicase N-terminal domain AL543_10060 PF01810 LysE type translocator AL543_10075 PF00892 EamA-like transporter family AL543_10080 PF00271 Helicase conserved C-terminal domain AL543_10080 PF00270 DEAD/DEAH box helicase AL543_10080 PF00570 HRDC domain AL543_10080 PF16124 RecQ zinc-binding AL543_10080 PF09382 RQC domain AL543_10095 PF07715 TonB-dependent Receptor Plug Domain AL543_10095 PF00593 TonB dependent receptor AL543_10100 PF00005 ABC transporter AL543_10105 PF01497 Periplasmic binding protein AL543_10110 PF01032 FecCD transport family AL543_10115 PF01380 SIS domain AL543_10115 PF01418 Helix-turn-helix domain, rpiR family AL543_10125 PF13580 SIS domain AL543_10130 PF00367 phosphotransferase system, EIIB AL543_10130 PF02378 Phosphotransferase system, EIIC AL543_10135 PF03350 Uncharacterized protein family, UPF0114 AL543_10140 PF03755 YicC-like family, N-terminal region AL543_10140 PF08340 Domain of unknown function (DUF1732) AL543_10145 PF01138 3' exoribonuclease family, domain 1 AL543_10145 PF03725 3' exoribonuclease family, domain 2 AL543_10150 PF00156 Phosphoribosyl transferase domain AL543_10155 PF13006 Insertion element 4 transposase N-terminal AL543_10155 PF01609 Transposase DDE domain AL543_10160 PF03279 Bacterial lipid A biosynthesis acyltransferase AL543_10165 PF03279 Bacterial lipid A biosynthesis acyltransferase AL543_10170 PF00440 Bacterial regulatory proteins, tetR family AL543_10175 PF02441 Flavoprotein AL543_10175 PF04127 DNA / pantothenate metabolism flavoprotein AL543_10185 PF04002 RadC-like JAB domain AL543_10190 PF00830 Ribosomal L28 family AL543_10195 PF00471 Ribosomal protein L33 AL543_10205 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL543_10205 PF06827 Zinc finger found in FPG and IleRS AL543_10205 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL543_10210 PF01467 Cytidylyltransferase-like AL543_10215 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL543_10225 PF00535 Glycosyl transferase family 2 AL543_10230 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL543_10260 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL543_10265 PF04488 Glycosyltransferase sugar-binding region containing DXD motif AL543_10275 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL543_10295 PF00457 Glycosyl hydrolases family 11 AL543_10295 PF01522 Polysaccharide deacetylase AL543_10300 PF01370 NAD dependent epimerase/dehydratase family AL543_10305 PF02706 Chain length determinant protein AL543_10310 PF16363 GDP-mannose 4,6 dehydratase AL543_10320 PF16363 GDP-mannose 4,6 dehydratase AL543_10325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL543_10335 PF00535 Glycosyl transferase family 2 AL543_10350 PF00534 Glycosyl transferases group 1 AL543_10350 PF13477 Glycosyl transferase 4-like AL543_10355 PF00953 Glycosyl transferase family 4 AL543_10365 PF00924 Mechanosensitive ion channel AL543_10370 PF03167 Uracil DNA glycosylase superfamily AL543_10375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL543_10380 PF04222 Protein of unknown function (DUF416) AL543_10385 PF00571 CBS domain AL543_10385 PF01595 Cyclin M transmembrane N-terminal domain AL543_10390 PF00216 Bacterial DNA-binding protein AL543_10400 PF02844 Phosphoribosylglycinamide synthetase, N domain AL543_10400 PF02843 Phosphoribosylglycinamide synthetase, C domain AL543_10400 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL543_10405 PF02142 MGS-like domain AL543_10405 PF01808 AICARFT/IMPCHase bienzyme AL543_10410 PF13411 MerR HTH family regulatory protein AL543_10415 PF18500 CadC C-terminal domain 1 AL543_10415 PF00486 Transcriptional regulatory protein, C terminal AL543_10420 PF13520 Amino acid permease AL543_10425 PF01276 Orn/Lys/Arg decarboxylase, major domain AL543_10425 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL543_10425 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL543_10430 PF00672 HAMP domain AL543_10430 PF17200 Single Cache domain 2 AL543_10430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_10440 PF07715 TonB-dependent Receptor Plug Domain AL543_10440 PF00593 TonB dependent receptor AL543_10445 PF01081 KDPG and KHG aldolase AL543_10450 PF02447 GntP family permease AL543_10455 PF01202 Shikimate kinase AL543_10460 PF00920 Dehydratase family AL543_10465 PF00356 Bacterial regulatory proteins, lacI family AL543_10465 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL543_10470 PF02954 Bacterial regulatory protein, Fis family AL543_10475 PF01207 Dihydrouridine synthase (Dus) AL543_10485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL543_10485 PF00289 Biotin carboxylase, N-terminal domain AL543_10485 PF02785 Biotin carboxylase C-terminal domain AL543_10490 PF00364 Biotin-requiring enzyme AL543_10495 PF01220 Dehydroquinase class II AL543_10500 PF16177 Acetyl-coenzyme A synthetase N-terminus AL543_10500 PF00501 AMP-binding enzyme AL543_10500 PF13193 AMP-binding enzyme C-terminal domain AL543_10520 PF12832 MFS_1 like family AL543_10525 PF00072 Response regulator receiver domain AL543_10525 PF09456 RcsC Alpha-Beta-Loop (ABL) AL543_10525 PF00512 His Kinase A (phospho-acceptor) domain AL543_10525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_10540 PF02541 Ppx/GppA phosphatase family AL543_10545 PF00271 Helicase conserved C-terminal domain AL543_10545 PF00270 DEAD/DEAH box helicase AL543_10550 PF00085 Thioredoxin AL543_10555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL543_10555 PF07498 Rho termination factor, N-terminal domain AL543_10555 PF07497 Rho termination factor, RNA-binding domain AL543_10565 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL543_10570 PF00970 Oxidoreductase FAD-binding domain AL543_10570 PF00175 Oxidoreductase NAD-binding domain AL543_10570 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_10575 PF00175 Oxidoreductase NAD-binding domain AL543_10620 PF13091 PLD-like domain AL543_10635 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL543_10635 PF01565 FAD binding domain AL543_10640 PF02237 Biotin protein ligase C terminal domain AL543_10640 PF08279 HTH domain AL543_10640 PF03099 Biotin/lipoate A/B protein ligase family AL543_10645 PF00485 Phosphoribulokinase / Uridine kinase family AL543_10670 PF00009 Elongation factor Tu GTP binding domain AL543_10670 PF03143 Elongation factor Tu C-terminal domain AL543_10670 PF03144 Elongation factor Tu domain 2 AL543_10675 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL543_10680 PF02357 Transcription termination factor nusG AL543_10680 PF00467 KOW motif AL543_10685 PF03946 Ribosomal protein L11, N-terminal domain AL543_10685 PF00298 Ribosomal protein L11, RNA binding domain AL543_10690 PF00687 Ribosomal protein L1p/L10e family AL543_10695 PF00466 Ribosomal protein L10 AL543_10700 PF16320 Ribosomal protein L7/L12 dimerisation domain AL543_10700 PF00542 Ribosomal protein L7/L12 C-terminal domain AL543_10705 PF00562 RNA polymerase Rpb2, domain 6 AL543_10705 PF04560 RNA polymerase Rpb2, domain 7 AL543_10705 PF04565 RNA polymerase Rpb2, domain 3 AL543_10705 PF04561 RNA polymerase Rpb2, domain 2 AL543_10705 PF10385 RNA polymerase beta subunit external 1 domain AL543_10705 PF04563 RNA polymerase beta subunit AL543_10710 PF00623 RNA polymerase Rpb1, domain 2 AL543_10710 PF04983 RNA polymerase Rpb1, domain 3 AL543_10710 PF04998 RNA polymerase Rpb1, domain 5 AL543_10710 PF05000 RNA polymerase Rpb1, domain 4 AL543_10710 PF04997 RNA polymerase Rpb1, domain 1 AL543_10715 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AL543_10720 PF00293 NUDIX domain AL543_10720 PF09297 NADH pyrophosphatase zinc ribbon domain AL543_10725 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL543_10730 PF00440 Bacterial regulatory proteins, tetR family AL543_10730 PF08360 QacR-like protein, C-terminal region AL543_10740 PF01551 Peptidase family M23 AL543_10745 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AL543_10745 PF01676 Metalloenzyme superfamily AL543_10755 PF00939 Sodium:sulfate symporter transmembrane region AL543_10760 PF02666 Phosphatidylserine decarboxylase AL543_10765 PF03193 RsgA GTPase AL543_10770 PF00929 Exonuclease AL543_10815 PF08331 Domain of unknown function (DUF1730) AL543_10820 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL543_10825 PF01520 N-acetylmuramoyl-L-alanine amidase AL543_10830 PF01119 DNA mismatch repair protein, C-terminal domain AL543_10830 PF08676 MutL C terminal dimerisation domain AL543_10840 PF17209 Hfq protein AL543_10845 PF01926 50S ribosome-binding GTPase AL543_10845 PF13167 GTP-binding GTPase N-terminal AL543_10845 PF16360 GTP-binding GTPase Middle Region AL543_10850 PF01145 SPFH domain / Band 7 family AL543_10850 PF12221 Bacterial membrane protein N terminal AL543_10855 PF01145 SPFH domain / Band 7 family AL543_10860 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AL543_10865 PF04102 SlyX AL543_10875 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL543_10875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL543_10880 PF13309 HTH domain AL543_10880 PF08348 YheO-like PAS domain AL543_10885 PF02635 DsrE/DsrF-like family AL543_10890 PF02635 DsrE/DsrF-like family AL543_10900 PF00164 Ribosomal protein S12/S23 AL543_10905 PF00177 Ribosomal protein S7p/S5e AL543_10910 PF03764 Elongation factor G, domain IV AL543_10910 PF03144 Elongation factor Tu domain 2 AL543_10910 PF00679 Elongation factor G C-terminus AL543_10910 PF00009 Elongation factor Tu GTP binding domain AL543_10910 PF14492 Elongation Factor G, domain II AL543_10915 PF03143 Elongation factor Tu C-terminal domain AL543_10915 PF03144 Elongation factor Tu domain 2 AL543_10915 PF00009 Elongation factor Tu GTP binding domain AL543_10920 PF04324 BFD-like [2Fe-2S] binding domain AL543_10925 PF00210 Ferritin-like domain AL543_10930 PF01250 Ribosomal protein S6 AL543_10935 PF00436 Single-strand binding protein family AL543_10940 PF01084 Ribosomal protein S18 AL543_10945 PF01281 Ribosomal protein L9, N-terminal domain AL543_10945 PF03948 Ribosomal protein L9, C-terminal domain AL543_10955 PF03796 DnaB-like helicase C terminal domain AL543_10955 PF00772 DnaB-like helicase N terminal domain AL543_10960 PF01168 Alanine racemase, N-terminal domain AL543_10960 PF00842 Alanine racemase, C-terminal domain AL543_10965 PF01894 Uncharacterised protein family UPF0047 AL543_10970 PF00342 Phosphoglucose isomerase AL543_10980 PF01475 Ferric uptake regulator family AL543_10985 PF01207 Dihydrouridine synthase (Dus) AL543_10990 PF09583 Phage shock protein G (Phageshock_PspG) AL543_11010 PF00258 Flavodoxin AL543_11010 PF00667 FAD binding domain AL543_11010 PF00175 Oxidoreductase NAD-binding domain AL543_11015 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL543_11015 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL543_11020 PF01507 Phosphoadenosine phosphosulfate reductase family AL543_11090 PF00999 Sodium/hydrogen exchanger family AL543_11095 PF02310 B12 binding domain AL543_11095 PF02607 B12 binding domain AL543_11095 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL543_11095 PF00809 Pterin binding enzyme AL543_11095 PF02574 Homocysteine S-methyltransferase AL543_11100 PF01842 ACT domain AL543_11100 PF00696 Amino acid kinase family AL543_11105 PF00266 Aminotransferase class-V AL543_11115 PF00005 ABC transporter AL543_11115 PF17755 UvrA DNA-binding domain AL543_11115 PF17760 UvrA interaction domain AL543_11120 PF00483 Nucleotidyl transferase AL543_11125 PF00196 Bacterial regulatory proteins, luxR family AL543_11130 PF00436 Single-strand binding protein family AL543_11135 PF00990 Diguanylate cyclase, GGDEF domain AL543_11135 PF17157 Gammaproteobacterial periplasmic sensor domain AL543_11135 PF00563 EAL domain AL543_11155 PF03958 Bacterial type II/III secretion system short domain AL543_11155 PF07660 Secretin and TonB N terminus short domain AL543_11155 PF00263 Bacterial type II and III secretion system protein AL543_11155 PF11741 AMIN domain AL543_11160 PF01471 Putative peptidoglycan binding domain AL543_11160 PF13401 AAA domain AL543_11170 PF00437 Type II/IV secretion system protein AL543_11175 PF00482 Type II secretion system (T2SS), protein F AL543_11185 PF07963 Prokaryotic N-terminal methylation motif AL543_11185 PF00114 Pilin (bacterial filament) AL543_11225 PF04085 rod shape-determining protein MreC AL543_11230 PF04093 rod shape-determining protein MreD AL543_11235 PF02545 Maf-like protein AL543_11240 PF00575 S1 RNA binding domain AL543_11240 PF10150 Ribonuclease E/G family AL543_11245 PF13502 AsmA-like C-terminal region AL543_11245 PF13116 Protein of unknown function AL543_11250 PF00795 Carbon-nitrogen hydrolase AL543_11255 PF01523 Putative modulator of DNA gyrase AL543_11260 PF03063 Prismane/CO dehydrogenase family AL543_11265 PF00970 Oxidoreductase FAD-binding domain AL543_11265 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_11265 PF00175 Oxidoreductase NAD-binding domain AL543_11275 PF06877 Regulator of ribonuclease activity B AL543_11280 PF02685 Glucokinase AL543_11280 PF01418 Helix-turn-helix domain, rpiR family AL543_11280 PF01380 SIS domain AL543_11290 PF07969 Amidohydrolase family AL543_11295 PF13358 DDE superfamily endonuclease AL543_11310 PF00474 Sodium:solute symporter family AL543_11315 PF02838 Glycosyl hydrolase family 20, domain 2 AL543_11315 PF00728 Glycosyl hydrolase family 20, catalytic domain AL543_11320 PF10282 Lactonase, 7-bladed beta-propeller AL543_11335 PF00582 Universal stress protein family AL543_11345 PF16868 NMT1-like family AL543_11350 PF02863 Arginine repressor, C-terminal domain AL543_11350 PF01316 Arginine repressor, DNA binding domain AL543_11355 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL543_11355 PF00056 lactate/malate dehydrogenase, NAD binding domain AL543_11360 PF13520 Amino acid permease AL543_11365 PF00348 Polyprenyl synthetase AL543_11370 PF00829 Ribosomal prokaryotic L21 protein AL543_11375 PF01016 Ribosomal L27 protein AL543_11380 PF01926 50S ribosome-binding GTPase AL543_11380 PF01018 GTP1/OBG AL543_11385 PF06738 Putative threonine/serine exporter AL543_11390 PF12821 Threonine/Serine exporter, ThrE AL543_11395 PF00186 Dihydrofolate reductase AL543_11400 PF00149 Calcineurin-like phosphoesterase AL543_11405 PF04379 ApaG domain AL543_11410 PF00398 Ribosomal RNA adenine dimethylase AL543_11415 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL543_11420 PF09312 SurA N-terminal domain AL543_11425 PF04453 LPS transport system D AL543_11425 PF03968 OstA-like protein AL543_11430 PF05099 Tellurite resistance protein TerB AL543_11430 PF00226 DnaJ domain AL543_11460 PF00672 HAMP domain AL543_11460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_11460 PF17200 Single Cache domain 2 AL543_11485 PF01464 Transglycosylase SLT domain AL543_11485 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL543_11490 PF04362 Bacterial Fe(2+) trafficking AL543_11495 PF14815 NUDIX domain AL543_11495 PF00730 HhH-GPD superfamily base excision DNA repair protein AL543_11495 PF00633 Helix-hairpin-helix motif AL543_11495 PF10576 Iron-sulfur binding domain of endonuclease III AL543_11500 PF02390 Putative methyltransferase AL543_11505 PF04960 Glutaminase AL543_11515 PF04055 Radical SAM superfamily AL543_11515 PF06969 HemN C-terminal domain AL543_11520 PF01725 Ham1 family AL543_11530 PF02594 Uncharacterised ACR, YggU family COG1872 AL543_11535 PF02325 YGGT family AL543_11540 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL543_11540 PF03807 NADP oxidoreductase coenzyme F420-dependent AL543_11545 PF01168 Alanine racemase, N-terminal domain AL543_11550 PF00437 Type II/IV secretion system protein AL543_11555 PF00437 Type II/IV secretion system protein AL543_11565 PF00579 tRNA synthetases class I (W and Y) AL543_11565 PF01479 S4 domain AL543_11570 PF03652 Holliday junction resolvase AL543_11575 PF02622 Uncharacterized ACR, COG1678 AL543_11580 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL543_11580 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL543_11585 PF04452 RNA methyltransferase AL543_11590 PF04231 Endonuclease I AL543_11595 PF10263 SprT-like family AL543_11595 PF17283 SprT-like zinc ribbon domain AL543_11600 PF02772 S-adenosylmethionine synthetase, central domain AL543_11600 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL543_11600 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL543_11610 PF02779 Transketolase, pyrimidine binding domain AL543_11610 PF02780 Transketolase, C-terminal domain AL543_11610 PF00456 Transketolase, thiamine diphosphate binding domain AL543_11615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_11615 PF03466 LysR substrate binding domain AL543_11620 PF00593 TonB dependent receptor AL543_11620 PF07715 TonB-dependent Receptor Plug Domain AL543_11625 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL543_11625 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL543_11630 PF00162 Phosphoglycerate kinase AL543_11635 PF01116 Fructose-bisphosphate aldolase class-II AL543_11640 PF05552 Conserved TM helix AL543_11640 PF00924 Mechanosensitive ion channel AL543_11645 PF01797 Transposase IS200 like AL543_11650 PF01810 LysE type translocator AL543_11655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_11655 PF03466 LysR substrate binding domain AL543_11660 PF04402 Protein of unknown function (DUF541) AL543_11665 PF00224 Pyruvate kinase, barrel domain AL543_11665 PF02887 Pyruvate kinase, alpha/beta domain AL543_11670 PF08220 DeoR-like helix-turn-helix domain AL543_11670 PF00455 DeoR C terminal sensor domain AL543_11675 PF01380 SIS domain AL543_11680 PF03480 Bacterial extracellular solute-binding protein, family 7 AL543_11695 PF04539 Sigma-70 region 3 AL543_11695 PF04542 Sigma-70 region 2 AL543_11695 PF00140 Sigma-70 factor, region 1.2 AL543_11695 PF03979 Sigma-70 factor, region 1.1 AL543_11695 PF04546 Sigma-70, non-essential region AL543_11695 PF04545 Sigma-70, region 4 AL543_11700 PF08278 DNA primase DnaG DnaB-binding AL543_11700 PF10410 DnaB-helicase binding domain of primase AL543_11700 PF08275 DNA primase catalytic core, N-terminal domain AL543_11700 PF01807 CHC2 zinc finger AL543_11705 PF09424 Yqey-like protein AL543_11710 PF01165 Ribosomal protein S21 AL543_11715 PF00814 Glycoprotease family AL543_11720 PF00561 alpha/beta hydrolase fold AL543_11725 PF02660 Glycerol-3-phosphate acyltransferase AL543_11735 PF02152 Dihydroneopterin aldolase AL543_11740 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL543_11745 PF02673 Bacitracin resistance protein BacA AL543_11750 PF04977 Septum formation initiator AL543_11755 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL543_11760 PF02542 YgbB family AL543_11765 PF01142 tRNA pseudouridine synthase D (TruD) AL543_11770 PF01975 Survival protein SurE AL543_11780 PF01476 LysM domain AL543_11780 PF01551 Peptidase family M23 AL543_11785 PF04539 Sigma-70 region 3 AL543_11785 PF04542 Sigma-70 region 2 AL543_11785 PF00140 Sigma-70 factor, region 1.2 AL543_11785 PF04545 Sigma-70, region 4 AL543_11790 PF01624 MutS domain I AL543_11790 PF05188 MutS domain II AL543_11790 PF05192 MutS domain III AL543_11790 PF00488 MutS domain V AL543_11790 PF05190 MutS family domain IV AL543_11795 PF00291 Pyridoxal-phosphate dependent enzyme AL543_11805 PF00528 Binding-protein-dependent transport system inner membrane component AL543_11810 PF00528 Binding-protein-dependent transport system inner membrane component AL543_11815 PF00005 ABC transporter AL543_11815 PF12857 TOBE-like domain AL543_11820 PF02464 Competence-damaged protein AL543_11825 PF00154 recA bacterial DNA recombination protein AL543_11830 PF02631 RecX family AL543_11835 PF02272 DHHA1 domain AL543_11835 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL543_11835 PF01411 tRNA synthetases class II (A) AL543_11840 PF01842 ACT domain AL543_11840 PF00696 Amino acid kinase family AL543_11840 PF13840 ACT domain AL543_11845 PF02599 Global regulator protein family AL543_11890 PF04277 Oxaloacetate decarboxylase, gamma chain AL543_11895 PF02436 Conserved carboxylase domain AL543_11895 PF00364 Biotin-requiring enzyme AL543_11895 PF00682 HMGL-like AL543_11900 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL543_11905 PF08240 Alcohol dehydrogenase GroES-like domain AL543_11905 PF00107 Zinc-binding dehydrogenase AL543_11910 PF09335 SNARE associated Golgi protein AL543_11915 PF05193 Peptidase M16 inactive domain AL543_11915 PF00675 Insulinase (Peptidase family M16) AL543_11920 PF04262 Glutamate-cysteine ligase AL543_11925 PF02664 S-Ribosylhomocysteinase (LuxS) AL543_11930 PF00571 CBS domain AL543_11930 PF03471 Transporter associated domain AL543_11930 PF01595 Cyclin M transmembrane N-terminal domain AL543_11935 PF01578 Cytochrome C assembly protein AL543_11940 PF02881 SRP54-type protein, helical bundle domain AL543_11940 PF00448 SRP54-type protein, GTPase domain AL543_11940 PF02978 Signal peptide binding domain AL543_11945 PF00886 Ribosomal protein S16 AL543_11950 PF01782 RimM N-terminal domain AL543_11950 PF05239 PRC-barrel domain AL543_11955 PF01746 tRNA (Guanine-1)-methyltransferase AL543_11960 PF01245 Ribosomal protein L19 AL543_11965 PF13180 PDZ domain AL543_11970 PF00595 PDZ domain AL543_11980 PF03969 AFG1-like ATPase AL543_11990 PF00572 Ribosomal protein L13 AL543_11995 PF00380 Ribosomal protein S9/S16 AL543_12000 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL543_12000 PF00355 Rieske [2Fe-2S] domain AL543_12005 PF00033 Cytochrome b/b6/petB AL543_12005 PF00032 Cytochrome b(C-terminal)/b6/petD AL543_12010 PF02167 Cytochrome C1 family AL543_12015 PF02798 Glutathione S-transferase, N-terminal domain AL543_12015 PF00043 Glutathione S-transferase, C-terminal domain AL543_12020 PF04386 Stringent starvation protein B AL543_12025 PF04972 BON domain AL543_12030 PF13580 SIS domain AL543_12035 PF02021 Uncharacterised protein family UPF0102 AL543_12040 PF04348 LppC putative lipoprotein AL543_12045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL543_12050 PF00440 Bacterial regulatory proteins, tetR family AL543_12055 PF00156 Phosphoribosyl transferase domain AL543_12060 PF00484 Carbonic anhydrase AL543_12065 PF00916 Sulfate permease family AL543_12065 PF01740 STAS domain AL543_12070 PF00005 ABC transporter AL543_12075 PF01061 ABC-2 type transporter AL543_12080 PF02569 Pantoate-beta-alanine ligase AL543_12085 PF02548 Ketopantoate hydroxymethyltransferase AL543_12090 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL543_12095 PF01743 Poly A polymerase head domain AL543_12095 PF12626 Polymerase A arginine-rich C-terminus AL543_12095 PF12627 Probable RNA and SrmB- binding site of polymerase A AL543_12100 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL543_12105 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL543_12110 PF17746 SfsA N-terminal OB domain AL543_12110 PF03749 Sugar fermentation stimulation protein RE domain AL543_12115 PF04408 Helicase associated domain (HA2) AL543_12115 PF00271 Helicase conserved C-terminal domain AL543_12115 PF08482 ATP-dependent helicase C-terminal AL543_12115 PF00270 DEAD/DEAH box helicase AL543_12120 PF14814 Bifunctional transglycosylase second domain AL543_12120 PF00905 Penicillin binding protein transpeptidase domain AL543_12120 PF00912 Transglycosylase AL543_12125 PF01734 Patatin-like phospholipase AL543_12130 PF00330 Aconitase family (aconitate hydratase) AL543_12130 PF06434 Aconitate hydratase 2 N-terminus AL543_12130 PF11791 Aconitate B N-terminal domain AL543_12135 PF06062 Uncharacterised protein family (UPF0231) AL543_12140 PF00543 Nitrogen regulatory protein P-II AL543_12145 PF00909 Ammonium Transporter Family AL543_12150 PF13416 Bacterial extracellular solute-binding protein AL543_12155 PF00528 Binding-protein-dependent transport system inner membrane component AL543_12160 PF00005 ABC transporter AL543_12160 PF08402 TOBE domain AL543_12165 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL543_12165 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL543_12165 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL543_12165 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL543_12170 PF06165 Glycosyltransferase family 36 AL543_12170 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL543_12175 PF00728 Glycosyl hydrolase family 20, catalytic domain AL543_12175 PF02838 Glycosyl hydrolase family 20, domain 2 AL543_12180 PF01869 BadF/BadG/BcrA/BcrD ATPase family AL543_12190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_12190 PF00005 ABC transporter AL543_12195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_12195 PF00005 ABC transporter AL543_12200 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_12200 PF00528 Binding-protein-dependent transport system inner membrane component AL543_12205 PF00528 Binding-protein-dependent transport system inner membrane component AL543_12210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_12215 PF00072 Response regulator receiver domain AL543_12215 PF17149 Periplasmic sensor domain found in signal transduction proteins AL543_12215 PF01627 Hpt domain AL543_12215 PF00672 HAMP domain AL543_12215 PF00512 His Kinase A (phospho-acceptor) domain AL543_12215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_12220 PF08468 Methyltransferase small domain N-terminal AL543_12220 PF05175 Methyltransferase small domain AL543_12225 PF01594 AI-2E family transporter AL543_12235 PF00202 Aminotransferase class-III AL543_12245 PF01521 Iron-sulphur cluster biosynthesis AL543_12255 PF00873 AcrB/AcrD/AcrF family AL543_12260 PF04225 Opacity-associated protein A LysM-like domain AL543_12260 PF01551 Peptidase family M23 AL543_12265 PF00579 tRNA synthetases class I (W and Y) AL543_12265 PF01479 S4 domain AL543_12270 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL543_12275 PF13609 Gram-negative porin AL543_12280 PF01272 Transcription elongation factor, GreA/GreB, C-term AL543_12280 PF03449 Transcription elongation factor, N-terminal AL543_12285 PF01985 CRS1 / YhbY (CRM) domain AL543_12290 PF01728 FtsJ-like methyltransferase AL543_12295 PF06480 FtsH Extracellular AL543_12295 PF00004 ATPase family associated with various cellular activities (AAA) AL543_12295 PF17862 AAA+ lid domain AL543_12295 PF01434 Peptidase family M41 AL543_12300 PF00809 Pterin binding enzyme AL543_12305 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL543_12305 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL543_12305 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL543_12305 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL543_12315 PF03840 Preprotein translocase SecG subunit AL543_12330 PF02576 RimP N-terminal domain AL543_12330 PF17384 RimP C-terminal SH3 domain AL543_12335 PF00575 S1 RNA binding domain AL543_12335 PF08529 NusA N-terminal domain AL543_12335 PF13184 NusA-like KH domain AL543_12340 PF11987 Translation-initiation factor 2 AL543_12340 PF08364 Bacterial translation initiation factor IF-2 associated region AL543_12340 PF04760 Translation initiation factor IF-2, N-terminal region AL543_12340 PF00009 Elongation factor Tu GTP binding domain AL543_12345 PF02033 Ribosome-binding factor A AL543_12350 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL543_12350 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL543_12350 PF09157 Pseudouridine synthase II TruB, C-terminal AL543_12355 PF00312 Ribosomal protein S15 AL543_12360 PF00575 S1 RNA binding domain AL543_12360 PF03725 3' exoribonuclease family, domain 2 AL543_12360 PF01138 3' exoribonuclease family, domain 1 AL543_12360 PF00013 KH domain AL543_12360 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL543_12365 PF13181 Tetratricopeptide repeat AL543_12365 PF07719 Tetratricopeptide repeat AL543_12370 PF01047 MarR family AL543_12390 PF03707 Bacterial signalling protein N terminal repeat AL543_12390 PF00563 EAL domain AL543_12390 PF00990 Diguanylate cyclase, GGDEF domain AL543_12400 PF13508 Acetyltransferase (GNAT) domain AL543_12415 PF03707 Bacterial signalling protein N terminal repeat AL543_12415 PF00563 EAL domain AL543_12415 PF00990 Diguanylate cyclase, GGDEF domain AL543_12420 PF16658 Class II release factor RF3, C-terminal domain AL543_12420 PF03144 Elongation factor Tu domain 2 AL543_12420 PF00009 Elongation factor Tu GTP binding domain AL543_12425 PF00270 DEAD/DEAH box helicase AL543_12425 PF00271 Helicase conserved C-terminal domain AL543_12430 PF05175 Methyltransferase small domain AL543_12435 PF05525 Branched-chain amino acid transport protein AL543_12445 PF00152 tRNA synthetases class II (D, K and N) AL543_12445 PF01336 OB-fold nucleic acid binding domain AL543_12450 PF02954 Bacterial regulatory protein, Fis family AL543_12450 PF00072 Response regulator receiver domain AL543_12450 PF00158 Sigma-54 interaction domain AL543_12465 PF00248 Aldo/keto reductase family AL543_12475 PF02976 DNA mismatch repair enzyme MutH AL543_12480 PF00293 NUDIX domain AL543_12485 PF00391 PEP-utilising enzyme, mobile domain AL543_12485 PF05524 PEP-utilising enzyme, N-terminal AL543_12485 PF02896 PEP-utilising enzyme, TIM barrel domain AL543_12485 PF01590 GAF domain AL543_12490 PF01925 Sulfite exporter TauE/SafE AL543_12495 PF01790 Prolipoprotein diacylglyceryl transferase AL543_12500 PF00303 Thymidylate synthase AL543_12505 PF02690 Na+/Pi-cotransporter AL543_12510 PF13358 DDE superfamily endonuclease AL543_12515 PF03466 LysR substrate binding domain AL543_12515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_12520 PF01022 Bacterial regulatory protein, arsR family AL543_12525 PF01649 Ribosomal protein S20 AL543_12530 PF03023 Lipid II flippase MurJ AL543_12535 PF01687 Riboflavin kinase AL543_12535 PF06574 FAD synthetase AL543_12540 PF06827 Zinc finger found in FPG and IleRS AL543_12540 PF00133 tRNA synthetases class I (I, L, M and V) AL543_12540 PF08264 Anticodon-binding domain of tRNA AL543_12545 PF01252 Signal peptidase (SPase) II AL543_12550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL543_12555 PF02401 LytB protein AL543_12560 PF02554 Carbon starvation protein CstA AL543_12575 PF13580 SIS domain AL543_12580 PF03702 Anhydro-N-acetylmuramic acid kinase AL543_12585 PF00933 Glycosyl hydrolase family 3 N terminal domain AL543_12590 PF00072 Response regulator receiver domain AL543_12590 PF04397 LytTr DNA-binding domain AL543_12595 PF07694 5TMR of 5TMR-LYT AL543_12595 PF06580 Histidine kinase AL543_12600 PF00793 DAHP synthetase I family AL543_12605 PF02153 Prephenate dehydrogenase AL543_12605 PF01817 Chorismate mutase type II AL543_12610 PF07238 PilZ domain AL543_12615 PF00005 ABC transporter AL543_12615 PF12848 ABC transporter AL543_12620 PF14718 Soluble lytic murein transglycosylase L domain AL543_12620 PF01464 Transglycosylase SLT domain AL543_12625 PF01371 Trp repressor protein AL543_12630 PF01931 Protein of unknown function DUF84 AL543_12635 PF00563 EAL domain AL543_12635 PF00990 Diguanylate cyclase, GGDEF domain AL543_12640 PF13416 Bacterial extracellular solute-binding protein AL543_12645 PF01817 Chorismate mutase type II AL543_12645 PF00800 Prephenate dehydratase AL543_12650 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL543_12655 PF01797 Transposase IS200 like AL543_12660 PF13525 Outer membrane lipoprotein AL543_12665 PF00849 RNA pseudouridylate synthase AL543_12665 PF01479 S4 domain AL543_12675 PF17871 AAA lid domain AL543_12675 PF07724 AAA domain (Cdc48 subfamily) AL543_12675 PF00004 ATPase family associated with various cellular activities (AAA) AL543_12675 PF10431 C-terminal, D2-small domain, of ClpB protein AL543_12675 PF02861 Clp amino terminal domain, pathogenicity island component AL543_12765 PF07715 TonB-dependent Receptor Plug Domain AL543_12765 PF00593 TonB dependent receptor AL543_12770 PF13580 SIS domain AL543_12785 PF00486 Transcriptional regulatory protein, C terminal AL543_12785 PF00072 Response regulator receiver domain AL543_12790 PF01738 Dienelactone hydrolase family AL543_12810 PF00881 Nitroreductase family AL543_12815 PF00037 4Fe-4S binding domain AL543_12825 PF04381 Putative exonuclease, RdgC AL543_12830 PF00486 Transcriptional regulatory protein, C terminal AL543_12830 PF00072 Response regulator receiver domain AL543_12835 PF00989 PAS fold AL543_12835 PF11808 Phosphate regulon sensor protein PhoR AL543_12835 PF00512 His Kinase A (phospho-acceptor) domain AL543_12835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_12840 PF12849 PBP superfamily domain AL543_12845 PF02541 Ppx/GppA phosphatase family AL543_12850 PF02503 Polyphosphate kinase middle domain AL543_12850 PF17941 Polyphosphate kinase C-terminal domain 1 AL543_12850 PF13090 Polyphosphate kinase C-terminal domain 2 AL543_12850 PF13089 Polyphosphate kinase N-terminal domain AL543_12855 PF00528 Binding-protein-dependent transport system inner membrane component AL543_12860 PF00528 Binding-protein-dependent transport system inner membrane component AL543_12865 PF00005 ABC transporter AL543_12870 PF01895 PhoU domain AL543_12875 PF03976 Polyphosphate kinase 2 (PPK2) AL543_12880 PF03932 CutC family AL543_12885 PF00578 AhpC/TSA family AL543_12885 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL543_12890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_12890 PF03466 LysR substrate binding domain AL543_12895 PF01274 Malate synthase AL543_12900 PF00463 Isocitrate lyase family AL543_12905 PF00571 CBS domain AL543_12910 PF02547 Queuosine biosynthesis protein AL543_12920 PF01702 Queuine tRNA-ribosyltransferase AL543_12925 PF02699 Preprotein translocase subunit AL543_12930 PF02355 Protein export membrane protein AL543_12930 PF13721 SecD export protein N-terminal TM region AL543_12930 PF07549 SecD/SecF GG Motif AL543_12935 PF02355 Protein export membrane protein AL543_12935 PF07549 SecD/SecF GG Motif AL543_12940 PF00459 Inositol monophosphatase family AL543_12945 PF00588 SpoU rRNA Methylase family AL543_12950 PF02082 Transcriptional regulator AL543_12955 PF00266 Aminotransferase class-V AL543_12960 PF01592 NifU-like N terminal domain AL543_12965 PF01521 Iron-sulphur cluster biosynthesis AL543_12970 PF07743 HSCB C-terminal oligomerisation domain AL543_12970 PF00226 DnaJ domain AL543_12975 PF00012 Hsp70 protein AL543_12980 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_12985 PF04384 Iron-sulphur cluster assembly AL543_12990 PF00883 Cytosol aminopeptidase family, catalytic domain AL543_12990 PF12404 Peptidase AL543_12995 PF00334 Nucleoside diphosphate kinase AL543_13000 PF04055 Radical SAM superfamily AL543_13005 PF13464 Domain of unknown function (DUF4115) AL543_13010 PF04551 GcpE protein AL543_13015 PF03129 Anticodon binding domain AL543_13015 PF13393 Histidyl-tRNA synthetase AL543_13020 PF09976 Tetratricopeptide repeat-like domain AL543_13025 PF13360 PQQ-like domain AL543_13030 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL543_13030 PF01926 50S ribosome-binding GTPase AL543_13045 PF02601 Exonuclease VII, large subunit AL543_13045 PF13742 OB-fold nucleic acid binding domain AL543_13050 PF00478 IMP dehydrogenase / GMP reductase domain AL543_13050 PF00571 CBS domain AL543_13055 PF00117 Glutamine amidotransferase class-I AL543_13055 PF02540 NAD synthase AL543_13055 PF00958 GMP synthase C terminal domain AL543_13060 PF00589 Phage integrase family AL543_13060 PF13356 Arm DNA-binding domain AL543_13070 PF13361 UvrD-like helicase C-terminal domain AL543_13070 PF00580 UvrD/REP helicase N-terminal domain AL543_13135 PF13358 DDE superfamily endonuclease AL543_13170 PF06483 Chitinase C AL543_13170 PF00704 Glycosyl hydrolases family 18 AL543_13175 PF01184 GPR1/FUN34/yaaH family AL543_13180 PF01797 Transposase IS200 like AL543_13185 PF03466 LysR substrate binding domain AL543_13185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_13195 PF01235 Sodium:alanine symporter family AL543_13200 PF01266 FAD dependent oxidoreductase AL543_13205 PF03466 LysR substrate binding domain AL543_13205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_13220 PF12792 CSS motif domain associated with EAL AL543_13220 PF00563 EAL domain AL543_13230 PF00072 Response regulator receiver domain AL543_13230 PF12431 Transcriptional regulator AL543_13235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_13235 PF17203 Single cache domain 3 AL543_13240 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL543_13245 PF00364 Biotin-requiring enzyme AL543_13245 PF00682 HMGL-like AL543_13245 PF02436 Conserved carboxylase domain AL543_13250 PF04277 Oxaloacetate decarboxylase, gamma chain AL543_13255 PF03390 2-hydroxycarboxylate transporter family AL543_13260 PF08218 Citrate lyase ligase C-terminal domain AL543_13265 PF06857 Malonate decarboxylase delta subunit (MdcD) AL543_13270 PF03328 HpcH/HpaI aldolase/citrate lyase family AL543_13275 PF04223 Citrate lyase, alpha subunit (CitF) AL543_13280 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase AL543_13285 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AL543_13295 PF00588 SpoU rRNA Methylase family AL543_13295 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL543_13300 PF00037 4Fe-4S binding domain AL543_13300 PF11953 Domain of unknown function (DUF3470) AL543_13320 PF13358 DDE superfamily endonuclease AL543_13335 PF13358 DDE superfamily endonuclease AL543_13345 PF00271 Helicase conserved C-terminal domain AL543_13345 PF00176 SNF2 family N-terminal domain AL543_13375 PF13356 Arm DNA-binding domain AL543_13375 PF00589 Phage integrase family AL543_13385 PF01668 SmpB protein AL543_13390 PF03364 Polyketide cyclase / dehydrase and lipid transport AL543_13395 PF03658 RnfH family Ubiquitin AL543_13400 PF04355 SmpA / OmlA family AL543_13405 PF02463 RecF/RecN/SMC N terminal domain AL543_13410 PF01513 ATP-NAD kinase AL543_13415 PF01025 GrpE AL543_13420 PF00012 Hsp70 protein AL543_13425 PF01556 DnaJ C terminal domain AL543_13425 PF00226 DnaJ domain AL543_13425 PF00684 DnaJ central domain AL543_13460 PF03806 AbgT putative transporter family AL543_13465 PF14437 MafB19-like deaminase AL543_13475 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_13475 PF01464 Transglycosylase SLT domain AL543_13485 PF02769 AIR synthase related protein, C-terminal domain AL543_13485 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL543_13485 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL543_13495 PF06786 Uncharacterised protein family (UPF0253) AL543_13505 PF04073 Aminoacyl-tRNA editing domain AL543_13505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL543_13505 PF03129 Anticodon binding domain AL543_13510 PF01980 tRNA-methyltransferase O AL543_13510 PF18389 TrmO C-terminal domain AL543_13515 PF01197 Ribosomal protein L31 AL543_13520 PF00444 Ribosomal protein L36 AL543_13525 PF03806 AbgT putative transporter family AL543_13530 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AL543_13560 PF00849 RNA pseudouridylate synthase AL543_13565 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL543_13565 PF02779 Transketolase, pyrimidine binding domain AL543_13565 PF02780 Transketolase, C-terminal domain AL543_13570 PF00348 Polyprenyl synthetase AL543_13575 PF02609 Exonuclease VII small subunit AL543_13580 PF01618 MotA/TolQ/ExbB proton channel family AL543_13585 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL543_13585 PF00691 OmpA family AL543_13590 PF02568 Thiamine biosynthesis protein (ThiI) AL543_13590 PF02926 THUMP domain AL543_13600 PF03466 LysR substrate binding domain AL543_13600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_13605 PF04241 Protein of unknown function (DUF423) AL543_13610 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL543_13610 PF01367 5'-3' exonuclease, C-terminal SAM fold AL543_13615 PF11892 Domain of unknown function (DUF3412) AL543_13615 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AL543_13615 PF03641 Possible lysine decarboxylase AL543_13620 PF00990 Diguanylate cyclase, GGDEF domain AL543_13630 PF14489 QueF-like protein AL543_13630 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL543_13635 PF07348 Syd protein (SUKH-2) AL543_13640 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AL543_13645 PF03180 NLPA lipoprotein AL543_13650 PF00528 Binding-protein-dependent transport system inner membrane component AL543_13655 PF09383 NIL domain AL543_13655 PF00005 ABC transporter AL543_13665 PF00356 Bacterial regulatory proteins, lacI family AL543_13670 PF02378 Phosphotransferase system, EIIC AL543_13670 PF00367 phosphotransferase system, EIIB AL543_13675 PF16657 Maltogenic Amylase, C-terminal domain AL543_13675 PF00128 Alpha amylase, catalytic domain AL543_13680 PF00486 Transcriptional regulatory protein, C terminal AL543_13680 PF00072 Response regulator receiver domain AL543_13685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_13685 PF00512 His Kinase A (phospho-acceptor) domain AL543_13685 PF00672 HAMP domain AL543_13715 PF13533 Biotin-lipoyl like AL543_13720 PF00873 AcrB/AcrD/AcrF family AL543_13730 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL543_13735 PF02350 UDP-N-acetylglucosamine 2-epimerase AL543_13740 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL543_13740 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL543_13740 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL543_13765 PF06426 Serine acetyltransferase, N-terminal AL543_13765 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_13775 PF13439 Glycosyltransferase Family 4 AL543_13775 PF00534 Glycosyl transferases group 1 AL543_13785 PF03808 Glycosyl transferase WecB/TagA/CpsF family AL543_13800 PF17945 Beta/Gamma crystallin AL543_13800 PF12561 ToxR activated gene A lipoprotein domain AL543_13815 PF02397 Bacterial sugar transferase AL543_13825 PF10531 SLBB domain AL543_13825 PF02563 Polysaccharide biosynthesis/export protein AL543_13825 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL543_13830 PF13807 G-rich domain on putative tyrosine kinase AL543_13830 PF02706 Chain length determinant protein AL543_13830 PF13614 AAA domain AL543_13850 PF00464 Serine hydroxymethyltransferase AL543_13860 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL543_13860 PF04055 Radical SAM superfamily AL543_13865 PF03099 Biotin/lipoate A/B protein ligase family AL543_13870 PF04359 Protein of unknown function (DUF493) AL543_13875 PF00768 D-alanyl-D-alanine carboxypeptidase AL543_13875 PF07943 Penicillin-binding protein 5, C-terminal domain AL543_13880 PF05036 Sporulation related domain AL543_13880 PF03330 Lytic transglycolase AL543_13885 PF01098 Cell cycle protein AL543_13890 PF00905 Penicillin binding protein transpeptidase domain AL543_13890 PF03717 Penicillin-binding Protein dimerisation domain AL543_13895 PF02590 Predicted SPOUT methyltransferase AL543_13905 PF06144 DNA polymerase III, delta subunit AL543_13905 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AL543_13910 PF04390 Lipopolysaccharide-assembly AL543_13915 PF08264 Anticodon-binding domain of tRNA AL543_13915 PF00133 tRNA synthetases class I (I, L, M and V) AL543_13915 PF13603 Leucyl-tRNA synthetase, Domain 2 AL543_13920 PF07295 Zinc-ribbon containing domain AL543_13925 PF00795 Carbon-nitrogen hydrolase AL543_13930 PF00571 CBS domain AL543_13930 PF03471 Transporter associated domain AL543_13935 PF02130 Uncharacterized protein family UPF0054 AL543_13940 PF02562 PhoH-like protein AL543_13945 PF00919 Uncharacterized protein family UPF0004 AL543_13945 PF01938 TRAM domain AL543_13945 PF04055 Radical SAM superfamily AL543_13950 PF01494 FAD binding domain AL543_13955 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL543_13960 PF02896 PEP-utilising enzyme, TIM barrel domain AL543_13960 PF05524 PEP-utilising enzyme, N-terminal AL543_13960 PF00391 PEP-utilising enzyme, mobile domain AL543_13965 PF00381 PTS HPr component phosphorylation site AL543_13975 PF00291 Pyridoxal-phosphate dependent enzyme AL543_13985 PF04354 ZipA, C-terminal FtsZ-binding domain AL543_13990 PF12826 Helix-hairpin-helix motif AL543_13990 PF00533 BRCA1 C Terminus (BRCT) domain AL543_13990 PF03120 NAD-dependent DNA ligase OB-fold domain AL543_13990 PF01653 NAD-dependent DNA ligase adenylation domain AL543_13990 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AL543_13995 PF13609 Gram-negative porin AL543_14005 PF13411 MerR HTH family regulatory protein AL543_14010 PF13006 Insertion element 4 transposase N-terminal AL543_14010 PF01609 Transposase DDE domain AL543_14015 PF01957 NfeD-like C-terminal, partner-binding AL543_14020 PF16200 C-terminal region of band_7 AL543_14020 PF01145 SPFH domain / Band 7 family AL543_14025 PF00085 Thioredoxin AL543_14030 PF00106 short chain dehydrogenase AL543_14035 PF01370 NAD dependent epimerase/dehydratase family AL543_14035 PF08338 Domain of unknown function (DUF1731) AL543_14040 PF12850 Calcineurin-like phosphoesterase superfamily domain AL543_14050 PF17323 Trans-membrane regulatory protein ToxS AL543_14055 PF00486 Transcriptional regulatory protein, C terminal AL543_14060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_14060 PF00183 Hsp90 protein AL543_14065 PF05191 Adenylate kinase, active site lid AL543_14070 PF00762 Ferrochelatase AL543_14075 PF00854 POT family AL543_14080 PF02357 Transcription termination factor nusG AL543_14085 PF13537 Glutamine amidotransferase domain AL543_14085 PF00733 Asparagine synthase AL543_14090 PF02254 TrkA-N domain AL543_14090 PF00999 Sodium/hydrogen exchanger family AL543_14095 PF01047 MarR family AL543_14095 PF00480 ROK family AL543_14100 PF01979 Amidohydrolase family AL543_14105 PF02378 Phosphotransferase system, EIIC AL543_14105 PF00367 phosphotransferase system, EIIB AL543_14105 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL543_14110 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL543_14110 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL543_14120 PF01416 tRNA pseudouridine synthase AL543_14125 PF17848 Acetyl-coA carboxylase zinc finger domain AL543_14125 PF01039 Carboxyl transferase domain AL543_14130 PF02875 Mur ligase family, glutamate ligase domain AL543_14130 PF08245 Mur ligase middle domain AL543_14135 PF05036 Sporulation related domain AL543_14140 PF02674 Colicin V production protein AL543_14145 PF00156 Phosphoribosyl transferase domain AL543_14150 PF03553 Na+/H+ antiporter family AL543_14150 PF13726 Na+-H+ antiporter family AL543_14155 PF00929 Exonuclease AL543_14160 PF18393 MotY N-terminal domain AL543_14160 PF00691 OmpA family AL543_14165 PF10952 Protein of unknown function (DUF2753) AL543_14170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_14175 PF00633 Helix-hairpin-helix motif AL543_14175 PF00730 HhH-GPD superfamily base excision DNA repair protein AL543_14175 PF10576 Iron-sulfur binding domain of endonuclease III AL543_14180 PF02508 Rnf-Nqr subunit, membrane protein AL543_14185 PF04205 FMN-binding domain AL543_14190 PF03116 NQR2, RnfD, RnfE family AL543_14195 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AL543_14195 PF12838 4Fe-4S dicluster domain AL543_14195 PF13375 RnfC Barrel sandwich hybrid domain AL543_14195 PF10531 SLBB domain AL543_14200 PF04060 Putative Fe-S cluster AL543_14205 PF02508 Rnf-Nqr subunit, membrane protein AL543_14210 PF01797 Transposase IS200 like AL543_14220 PF02151 UvrB/uvrC motif AL543_14220 PF12344 Ultra-violet resistance protein B AL543_14220 PF00271 Helicase conserved C-terminal domain AL543_14220 PF04851 Type III restriction enzyme, res subunit AL543_14220 PF17757 UvrB interaction domain AL543_14225 PF02954 Bacterial regulatory protein, Fis family AL543_14225 PF00072 Response regulator receiver domain AL543_14225 PF00158 Sigma-54 interaction domain AL543_14230 PF01627 Hpt domain AL543_14235 PF01933 Uncharacterised protein family UPF0052 AL543_14240 PF04055 Radical SAM superfamily AL543_14240 PF06463 Molybdenum Cofactor Synthesis C AL543_14245 PF00994 Probable molybdopterin binding domain AL543_14250 PF01967 MoaC family AL543_14255 PF02597 ThiS family AL543_14260 PF02391 MoaE protein AL543_14275 PF00571 CBS domain AL543_14275 PF00478 IMP dehydrogenase / GMP reductase domain AL543_14280 PF00403 Heavy-metal-associated domain AL543_14285 PF13358 DDE superfamily endonuclease AL543_14290 PF01048 Phosphorylase superfamily AL543_14300 PF09334 tRNA synthetases class I (M) AL543_14300 PF01588 Putative tRNA binding domain AL543_14305 PF10609 NUBPL iron-transfer P-loop NTPase AL543_14310 PF00485 Phosphoribulokinase / Uridine kinase family AL543_14315 PF05170 AsmA family AL543_14320 PF12557 Cob(I)alamin adenosyltransferase N terminal AL543_14320 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AL543_14325 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL543_14330 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL543_14335 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL543_14345 PF04542 Sigma-70 region 2 AL543_14345 PF08281 Sigma-70, region 4 AL543_14350 PF00108 Thiolase, N-terminal domain AL543_14350 PF02803 Thiolase, C-terminal domain AL543_14355 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL543_14355 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL543_14355 PF00378 Enoyl-CoA hydratase/isomerase AL543_14360 PF00881 Nitroreductase family AL543_14365 PF03466 LysR substrate binding domain AL543_14365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_14370 PF00072 Response regulator receiver domain AL543_14380 PF04304 Protein of unknown function (DUF454) AL543_14385 PF00156 Phosphoribosyl transferase domain AL543_14390 PF12169 DNA polymerase III subunits gamma and tau domain III AL543_14390 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AL543_14390 PF12170 DNA polymerase III tau subunit V interacting with alpha AL543_14395 PF02575 YbaB/EbfC DNA-binding family AL543_14400 PF13662 Toprim domain AL543_14400 PF02132 RecR protein AL543_14405 PF03692 Putative zinc- or iron-chelating domain AL543_14410 PF03692 Putative zinc- or iron-chelating domain AL543_14415 PF00106 short chain dehydrogenase AL543_14420 PF08496 Peptidase family S49 N-terminal AL543_14420 PF01343 Peptidase family S49 AL543_14425 PF00291 Pyridoxal-phosphate dependent enzyme AL543_14430 PF01037 Lrp/AsnC ligand binding domain AL543_14430 PF13404 AsnC-type helix-turn-helix domain AL543_14445 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL543_14455 PF00563 EAL domain AL543_14455 PF00990 Diguanylate cyclase, GGDEF domain AL543_14455 PF03707 Bacterial signalling protein N terminal repeat AL543_14485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_14485 PF00672 HAMP domain AL543_14490 PF07715 TonB-dependent Receptor Plug Domain AL543_14490 PF00593 TonB dependent receptor AL543_14495 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AL543_14500 PF06276 Ferric iron reductase FhuF-like transporter AL543_14500 PF04183 IucA / IucC family AL543_14510 PF06276 Ferric iron reductase FhuF-like transporter AL543_14510 PF04183 IucA / IucC family AL543_14515 PF01032 FecCD transport family AL543_14520 PF01497 Periplasmic binding protein AL543_14525 PF00005 ABC transporter AL543_14545 PF00550 Phosphopantetheine attachment site AL543_14545 PF00501 AMP-binding enzyme AL543_14545 PF00668 Condensation domain AL543_14545 PF13193 AMP-binding enzyme C-terminal domain AL543_14555 PF06339 Ectoine synthase AL543_14560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL543_14560 PF02770 Acyl-CoA dehydrogenase, middle domain AL543_14560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL543_14565 PF01323 DSBA-like thioredoxin domain AL543_14570 PF00893 Small Multidrug Resistance protein AL543_14575 PF00893 Small Multidrug Resistance protein AL543_14580 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL543_14590 PF01022 Bacterial regulatory protein, arsR family AL543_14595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL543_14595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL543_14610 PF00455 DeoR C terminal sensor domain AL543_14610 PF08220 DeoR-like helix-turn-helix domain AL543_14615 PF00455 DeoR C terminal sensor domain AL543_14615 PF08220 DeoR-like helix-turn-helix domain AL543_14620 PF08013 Tagatose 6 phosphate kinase AL543_14625 PF01380 SIS domain AL543_14630 PF03830 PTS system sorbose subfamily IIB component AL543_14635 PF03609 PTS system sorbose-specific iic component AL543_14640 PF03613 PTS system mannose/fructose/sorbose family IID component AL543_14645 PF03610 PTS system fructose IIA component AL543_14650 PF01979 Amidohydrolase family AL543_14655 PF01116 Fructose-bisphosphate aldolase class-II AL543_14665 PF13358 DDE superfamily endonuclease AL543_14680 PF00704 Glycosyl hydrolases family 18 AL543_14680 PF06483 Chitinase C AL543_14690 PF01161 Phosphatidylethanolamine-binding protein AL543_14710 PF03481 Putative GTP-binding controlling metal-binding AL543_14710 PF01300 Telomere recombination AL543_14725 PF00072 Response regulator receiver domain AL543_14735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_14735 PF00512 His Kinase A (phospho-acceptor) domain AL543_14735 PF00989 PAS fold AL543_14735 PF13426 PAS domain AL543_14735 PF13188 PAS domain AL543_14740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_14740 PF00512 His Kinase A (phospho-acceptor) domain AL543_14745 PF03707 Bacterial signalling protein N terminal repeat AL543_14745 PF00990 Diguanylate cyclase, GGDEF domain AL543_14745 PF00563 EAL domain AL543_14745 PF13188 PAS domain AL543_14750 PF00158 Sigma-54 interaction domain AL543_14750 PF02954 Bacterial regulatory protein, Fis family AL543_14750 PF00072 Response regulator receiver domain AL543_14755 PF00512 His Kinase A (phospho-acceptor) domain AL543_14755 PF13188 PAS domain AL543_14755 PF00072 Response regulator receiver domain AL543_14755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_14755 PF08448 PAS fold AL543_14765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_14770 PF00528 Binding-protein-dependent transport system inner membrane component AL543_14775 PF00528 Binding-protein-dependent transport system inner membrane component AL543_14775 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_14780 PF00005 ABC transporter AL543_14780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_14785 PF00005 ABC transporter AL543_14785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_14790 PF13409 Glutathione S-transferase, N-terminal domain AL543_14795 PF07085 DRTGG domain AL543_14795 PF01515 Phosphate acetyl/butaryl transferase AL543_14800 PF00871 Acetokinase family AL543_14805 PF04217 Protein of unknown function, DUF412 AL543_14810 PF09905 DNA-binding protein VF530 AL543_14820 PF02653 Branched-chain amino acid transport system / permease component AL543_14825 PF00005 ABC transporter AL543_14830 PF05230 MASE2 domain AL543_14830 PF00990 Diguanylate cyclase, GGDEF domain AL543_14835 PF01207 Dihydrouridine synthase (Dus) AL543_14840 PF02810 SEC-C motif AL543_14840 PF07517 SecA DEAD-like domain AL543_14840 PF07516 SecA Wing and Scaffold domain AL543_14840 PF01043 SecA preprotein cross-linking domain AL543_14845 PF03548 Outer membrane lipoprotein carrier protein LolA AL543_14850 PF12002 MgsA AAA+ ATPase C terminal AL543_14850 PF00004 ATPase family associated with various cellular activities (AAA) AL543_14850 PF16193 AAA C-terminal domain AL543_14855 PF02403 Seryl-tRNA synthetase N-terminal domain AL543_14855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL543_14860 PF00202 Aminotransferase class-III AL543_14865 PF04055 Radical SAM superfamily AL543_14865 PF06968 Biotin and Thiamin Synthesis associated domain AL543_14870 PF00155 Aminotransferase class I and II AL543_14875 PF08241 Methyltransferase domain AL543_14890 PF01435 Peptidase family M48 AL543_14900 PF00106 short chain dehydrogenase AL543_14925 PF16036 Chalcone isomerase-like AL543_14935 PF00206 Lyase AL543_14935 PF08328 Adenylosuccinate lyase C-terminal AL543_14940 PF04356 Protein of unknown function (DUF489) AL543_14950 PF00294 pfkB family carbohydrate kinase AL543_14955 PF00816 H-NS histone family AL543_14960 PF03553 Na+/H+ antiporter family AL543_14965 PF08029 HisG, C-terminal domain AL543_14965 PF01634 ATP phosphoribosyltransferase AL543_14970 PF00815 Histidinol dehydrogenase AL543_14975 PF00155 Aminotransferase class I and II AL543_14980 PF00475 Imidazoleglycerol-phosphate dehydratase AL543_14980 PF08645 Polynucleotide kinase 3 phosphatase AL543_14985 PF00117 Glutamine amidotransferase class-I AL543_14990 PF00977 Histidine biosynthesis protein AL543_14995 PF00977 Histidine biosynthesis protein AL543_15000 PF01502 Phosphoribosyl-AMP cyclohydrolase AL543_15000 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL543_15005 PF00849 RNA pseudouridylate synthase AL543_15010 PF03971 Monomeric isocitrate dehydrogenase AL543_15015 PF00313 'Cold-shock' DNA-binding domain AL543_15020 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL543_15025 PF07724 AAA domain (Cdc48 subfamily) AL543_15025 PF17871 AAA lid domain AL543_15025 PF00004 ATPase family associated with various cellular activities (AAA) AL543_15025 PF10431 C-terminal, D2-small domain, of ClpB protein AL543_15025 PF02861 Clp amino terminal domain, pathogenicity island component AL543_15030 PF06826 Predicted Permease Membrane Region AL543_15030 PF02080 TrkA-C domain AL543_15035 PF00462 Glutaredoxin AL543_15045 PF00465 Iron-containing alcohol dehydrogenase AL543_15050 PF01418 Helix-turn-helix domain, rpiR family AL543_15050 PF01380 SIS domain AL543_15055 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL543_15065 PF03956 Lysine exporter LysO AL543_15075 PF04993 TfoX N-terminal domain AL543_15075 PF04994 TfoX C-terminal domain AL543_15095 PF00989 PAS fold AL543_15095 PF00512 His Kinase A (phospho-acceptor) domain AL543_15095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_15105 PF01609 Transposase DDE domain AL543_15105 PF13006 Insertion element 4 transposase N-terminal AL543_15110 PF00266 Aminotransferase class-V AL543_15125 PF18030 RimK PreATP-grasp domain AL543_15125 PF08443 RimK-like ATP-grasp domain AL543_15130 PF08003 Protein of unknown function (DUF1698) AL543_15135 PF13649 Methyltransferase domain AL543_15140 PF01904 Protein of unknown function DUF72 AL543_15145 PF02938 GAD domain AL543_15145 PF00152 tRNA synthetases class II (D, K and N) AL543_15145 PF01336 OB-fold nucleic acid binding domain AL543_15150 PF00265 Thymidine kinase AL543_15155 PF00375 Sodium:dicarboxylate symporter family AL543_15160 PF00290 Tryptophan synthase alpha chain AL543_15165 PF00291 Pyridoxal-phosphate dependent enzyme AL543_15170 PF00218 Indole-3-glycerol phosphate synthase AL543_15170 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL543_15175 PF00591 Glycosyl transferase family, a/b domain AL543_15175 PF02885 Glycosyl transferase family, helical bundle domain AL543_15180 PF00117 Glutamine amidotransferase class-I AL543_15185 PF04715 Anthranilate synthase component I, N terminal region AL543_15185 PF00425 chorismate binding enzyme AL543_15190 PF08056 Tryptophan operon leader peptide AL543_15195 PF02811 PHP domain AL543_15200 PF01300 Telomere recombination AL543_15205 PF00849 RNA pseudouridylate synthase AL543_15205 PF01479 S4 domain AL543_15210 PF00664 ABC transporter transmembrane region AL543_15210 PF00005 ABC transporter AL543_15215 PF00005 ABC transporter AL543_15215 PF00664 ABC transporter transmembrane region AL543_15220 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_15230 PF00266 Aminotransferase class-V AL543_15235 PF08448 PAS fold AL543_15235 PF00990 Diguanylate cyclase, GGDEF domain AL543_15240 PF02698 DUF218 domain AL543_15250 PF00390 Malic enzyme, N-terminal domain AL543_15250 PF03949 Malic enzyme, NAD binding domain AL543_15260 PF01259 SAICAR synthetase AL543_15280 PF00691 OmpA family AL543_15280 PF13488 Glycine zipper AL543_15295 PF01565 FAD binding domain AL543_15295 PF13183 4Fe-4S dicluster domain AL543_15295 PF02913 FAD linked oxidases, C-terminal domain AL543_15300 PF04191 Phospholipid methyltransferase AL543_15315 PF00221 Aromatic amino acid lyase AL543_15320 PF17392 Urocanase C-terminal domain AL543_15320 PF17391 Urocanase N-terminal domain AL543_15320 PF01175 Urocanase Rossmann-like domain AL543_15325 PF00491 Arginase family AL543_15330 PF01979 Amidohydrolase family AL543_15335 PF07702 UTRA domain AL543_15335 PF00392 Bacterial regulatory proteins, gntR family AL543_15345 PF04269 Protein of unknown function, DUF440 AL543_15350 PF01132 Elongation factor P (EF-P) OB domain AL543_15350 PF09285 Elongation factor P, C-terminal AL543_15350 PF08207 Elongation factor P (EF-P) KOW-like domain AL543_15360 PF12792 CSS motif domain associated with EAL AL543_15360 PF00563 EAL domain AL543_15365 PF00136 DNA polymerase family B AL543_15365 PF03104 DNA polymerase family B, exonuclease domain AL543_15370 PF00072 Response regulator receiver domain AL543_15370 PF00196 Bacterial regulatory proteins, luxR family AL543_15375 PF02151 UvrB/uvrC motif AL543_15375 PF08459 UvrC Helix-hairpin-helix N-terminal AL543_15375 PF01541 GIY-YIG catalytic domain AL543_15380 PF01066 CDP-alcohol phosphatidyltransferase AL543_15405 PF01797 Transposase IS200 like AL543_15410 PF13358 DDE superfamily endonuclease AL543_15420 PF00583 Acetyltransferase (GNAT) family AL543_15425 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL543_15425 PF01409 tRNA synthetases class II core domain (F) AL543_15430 PF03147 Ferredoxin-fold anticodon binding domain AL543_15430 PF01588 Putative tRNA binding domain AL543_15430 PF03484 tRNA synthetase B5 domain AL543_15430 PF03483 B3/4 domain AL543_15430 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL543_15435 PF00216 Bacterial DNA-binding protein AL543_15455 PF05724 Thiopurine S-methyltransferase (TPMT) AL543_15460 PF02222 ATP-grasp domain AL543_15470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL543_15470 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AL543_15475 PF04172 LrgB-like family AL543_15480 PF03788 LrgA family AL543_15485 PF00929 Exonuclease AL543_15485 PF08411 Exonuclease C-terminal AL543_15495 PF01641 SelR domain AL543_15500 PF02277 Phosphoribosyltransferase AL543_15505 PF02654 Cobalamin-5-phosphate synthase AL543_15510 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AL543_15520 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL543_15525 PF01032 FecCD transport family AL543_15530 PF00005 ABC transporter AL543_15545 PF00672 HAMP domain AL543_15545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_15545 PF17200 Single Cache domain 2 AL543_15560 PF00994 Probable molybdopterin binding domain AL543_15570 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_15570 PF00175 Oxidoreductase NAD-binding domain AL543_15570 PF00970 Oxidoreductase FAD-binding domain AL543_15575 PF00268 Ribonucleotide reductase, small chain AL543_15580 PF03477 ATP cone domain AL543_15580 PF02867 Ribonucleotide reductase, barrel domain AL543_15580 PF00317 Ribonucleotide reductase, all-alpha domain AL543_15590 PF03989 DNA gyrase C-terminal domain, beta-propeller AL543_15590 PF00521 DNA gyrase/topoisomerase IV, subunit A AL543_15600 PF02335 Cytochrome c552 AL543_15610 PF13247 4Fe-4S dicluster domain AL543_15615 PF03916 Polysulphide reductase, NrfD AL543_15620 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL543_15620 PF01578 Cytochrome C assembly protein AL543_15625 PF08534 Redoxin AL543_15630 PF03918 Cytochrome C biogenesis protein AL543_15640 PF00313 'Cold-shock' DNA-binding domain AL543_15670 PF00925 GTP cyclohydrolase II AL543_15700 PF05951 Bacterial protein of unknown function (DUF882) AL543_15705 PF00753 Metallo-beta-lactamase superfamily AL543_15720 PF03480 Bacterial extracellular solute-binding protein, family 7 AL543_15730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL543_15735 PF07730 Histidine kinase AL543_15735 PF17200 Single Cache domain 2 AL543_15740 PF00196 Bacterial regulatory proteins, luxR family AL543_15740 PF00072 Response regulator receiver domain AL543_15745 PF01047 MarR family AL543_15750 PF02028 BCCT, betaine/carnitine/choline family transporter AL543_15755 PF01522 Polysaccharide deacetylase AL543_15760 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL543_15765 PF02378 Phosphotransferase system, EIIC AL543_15770 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AL543_15775 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL543_15775 PF02056 Family 4 glycosyl hydrolase AL543_15780 PF04794 YdjC-like protein AL543_15790 PF13506 Glycosyl transferase family 21 AL543_15795 PF04349 Periplasmic glucan biosynthesis protein, MdoG AL543_15800 PF00672 HAMP domain AL543_15800 PF02743 Cache domain AL543_15800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_15815 PF00155 Aminotransferase class I and II AL543_15820 PF00672 HAMP domain AL543_15820 PF01966 HD domain AL543_15825 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_15825 PF12464 Maltose acetyltransferase AL543_15830 PF08543 Phosphomethylpyrimidine kinase AL543_15835 PF01336 OB-fold nucleic acid binding domain AL543_15835 PF00152 tRNA synthetases class II (D, K and N) AL543_15840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_15840 PF17200 Single Cache domain 2 AL543_15840 PF00672 HAMP domain AL543_15845 PF01242 6-pyruvoyl tetrahydropterin synthase AL543_15850 PF03313 Serine dehydratase alpha chain AL543_15850 PF03315 Serine dehydratase beta chain AL543_15855 PF03222 Tryptophan/tyrosine permease family AL543_15860 PF00293 NUDIX domain AL543_15865 PF00425 chorismate binding enzyme AL543_15865 PF04715 Anthranilate synthase component I, N terminal region AL543_15880 PF04317 YcjX-like family, DUF463 AL543_15885 PF05128 Domain of unknown function (DUF697) AL543_15890 PF18024 Helix-turn-helix domain AL543_15890 PF00158 Sigma-54 interaction domain AL543_15895 PF13302 Acetyltransferase (GNAT) domain AL543_15910 PF00892 EamA-like transporter family AL543_15915 PF00842 Alanine racemase, C-terminal domain AL543_15915 PF01168 Alanine racemase, N-terminal domain AL543_15920 PF12729 Four helix bundle sensory module for signal transduction AL543_15920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_15920 PF00672 HAMP domain AL543_15925 PF00939 Sodium:sulfate symporter transmembrane region AL543_15930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_15930 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_15930 PF00512 His Kinase A (phospho-acceptor) domain AL543_15935 PF02954 Bacterial regulatory protein, Fis family AL543_15935 PF00158 Sigma-54 interaction domain AL543_15935 PF00072 Response regulator receiver domain AL543_15945 PF06629 MltA-interacting protein MipA AL543_15950 PF00512 His Kinase A (phospho-acceptor) domain AL543_15950 PF00672 HAMP domain AL543_15950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_15955 PF00486 Transcriptional regulatory protein, C terminal AL543_15955 PF00072 Response regulator receiver domain AL543_15975 PF13358 DDE superfamily endonuclease AL543_15985 PF13407 Periplasmic binding protein domain AL543_15990 PF00005 ABC transporter AL543_15995 PF02653 Branched-chain amino acid transport system / permease component AL543_16010 PF01970 Tripartite tricarboxylate transporter TctA family AL543_16040 PF00285 Citrate synthase, C-terminal domain AL543_16045 PF00330 Aconitase family (aconitate hydratase) AL543_16045 PF00694 Aconitase C-terminal domain AL543_16050 PF04303 PrpF protein AL543_16055 PF00501 AMP-binding enzyme AL543_16055 PF13193 AMP-binding enzyme C-terminal domain AL543_16055 PF16177 Acetyl-coenzyme A synthetase N-terminus AL543_16070 PF07687 Peptidase dimerisation domain AL543_16070 PF01546 Peptidase family M20/M25/M40 AL543_16075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_16080 PF04209 homogentisate 1,2-dioxygenase AL543_16090 PF14497 Glutathione S-transferase, C-terminal domain AL543_16090 PF02798 Glutathione S-transferase, N-terminal domain AL543_16095 PF00072 Response regulator receiver domain AL543_16100 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL543_16100 PF00072 Response regulator receiver domain AL543_16100 PF01627 Hpt domain AL543_16100 PF00512 His Kinase A (phospho-acceptor) domain AL543_16100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_16100 PF00672 HAMP domain AL543_16105 PF08534 Redoxin AL543_16105 PF00462 Glutaredoxin AL543_16110 PF13358 DDE superfamily endonuclease AL543_16115 PF00990 Diguanylate cyclase, GGDEF domain AL543_16120 PF10672 S-adenosylmethionine-dependent methyltransferase AL543_16120 PF17785 PUA-like domain AL543_16125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_16125 PF00672 HAMP domain AL543_16125 PF12729 Four helix bundle sensory module for signal transduction AL543_16130 PF00708 Acylphosphatase AL543_16135 PF04358 DsrC like protein AL543_16140 PF01027 Inhibitor of apoptosis-promoting Bax1 AL543_16145 PF00005 ABC transporter AL543_16150 PF00528 Binding-protein-dependent transport system inner membrane component AL543_16155 PF00528 Binding-protein-dependent transport system inner membrane component AL543_16160 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_16165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL543_16165 PF10414 Sirohaem synthase dimerisation region AL543_16165 PF14824 Sirohaem biosynthesis protein central AL543_16175 PF04055 Radical SAM superfamily AL543_16180 PF06508 Queuosine biosynthesis protein QueC AL543_16200 PF00563 EAL domain AL543_16200 PF00990 Diguanylate cyclase, GGDEF domain AL543_16200 PF03707 Bacterial signalling protein N terminal repeat AL543_16210 PF17158 Membrane-associated sensor, integral membrane domain AL543_16210 PF00990 Diguanylate cyclase, GGDEF domain AL543_16215 PF00012 Hsp70 protein AL543_16220 PF00012 Hsp70 protein AL543_16230 PF00563 EAL domain AL543_16230 PF03707 Bacterial signalling protein N terminal repeat AL543_16230 PF13188 PAS domain AL543_16230 PF00990 Diguanylate cyclase, GGDEF domain AL543_16260 PF00270 DEAD/DEAH box helicase AL543_16260 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL543_16260 PF11898 Domain of unknown function (DUF3418) AL543_16260 PF04408 Helicase associated domain (HA2) AL543_16260 PF00271 Helicase conserved C-terminal domain AL543_16270 PF03738 Glutathionylspermidine synthase preATP-grasp AL543_16285 PF13358 DDE superfamily endonuclease AL543_16305 PF01979 Amidohydrolase family AL543_16310 PF00012 Hsp70 protein AL543_16315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_16315 PF03466 LysR substrate binding domain AL543_16320 PF07690 Major Facilitator Superfamily AL543_16325 PF00893 Small Multidrug Resistance protein AL543_16330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_16330 PF00672 HAMP domain AL543_16335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_16335 PF08447 PAS fold AL543_16335 PF13426 PAS domain AL543_16340 PF00270 DEAD/DEAH box helicase AL543_16340 PF00271 Helicase conserved C-terminal domain AL543_16350 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL543_16360 PF01266 FAD dependent oxidoreductase AL543_16365 PF00582 Universal stress protein family AL543_16370 PF03401 Tripartite tricarboxylate transporter family receptor AL543_16385 PF00171 Aldehyde dehydrogenase family AL543_16395 PF01613 Flavin reductase like domain AL543_16400 PF01047 MarR family AL543_16405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL543_16420 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL543_16425 PF03328 HpcH/HpaI aldolase/citrate lyase family AL543_16430 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL543_16435 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL543_16440 PF00171 Aldehyde dehydrogenase family AL543_16455 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AL543_16460 PF00171 Aldehyde dehydrogenase family AL543_16470 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AL543_16475 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL543_16480 PF05638 Type VI secretion system effector, Hcp AL543_16485 PF16671 Actin cross-linking domain AL543_16485 PF04717 Type VI secretion system, phage-baseplate injector AL543_16505 PF01810 LysE type translocator AL543_16510 PF01235 Sodium:alanine symporter family AL543_16525 PF17155 Gammaproteobacterial periplasmic sensor domain AL543_16525 PF00990 Diguanylate cyclase, GGDEF domain AL543_16530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_16530 PF00989 PAS fold AL543_16530 PF00512 His Kinase A (phospho-acceptor) domain AL543_16540 PF00196 Bacterial regulatory proteins, luxR family AL543_16540 PF00072 Response regulator receiver domain AL543_16545 PF00171 Aldehyde dehydrogenase family AL543_16550 PF13416 Bacterial extracellular solute-binding protein AL543_16555 PF13416 Bacterial extracellular solute-binding protein AL543_16560 PF00528 Binding-protein-dependent transport system inner membrane component AL543_16565 PF00528 Binding-protein-dependent transport system inner membrane component AL543_16570 PF00005 ABC transporter AL543_16570 PF08402 TOBE domain AL543_16575 PF13358 DDE superfamily endonuclease AL543_16595 PF01171 PP-loop family AL543_16600 PF00582 Universal stress protein family AL543_16605 PF13545 Crp-like helix-turn-helix domain AL543_16605 PF00027 Cyclic nucleotide-binding domain AL543_16620 PF00403 Heavy-metal-associated domain AL543_16630 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL543_16630 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL543_16645 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL543_16660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_16660 PF00072 Response regulator receiver domain AL543_16660 PF09308 LuxQ, periplasmic AL543_16660 PF00512 His Kinase A (phospho-acceptor) domain AL543_16685 PF06303 MatP N-terminal domain AL543_16685 PF17414 MatP C-terminal ribbon-helix-helix domain AL543_16690 PF13654 AAA domain AL543_16690 PF05362 Lon protease (S16) C-terminal proteolytic domain AL543_16695 PF07977 FabA-like domain AL543_16700 PF04957 Ribosome modulation factor AL543_16720 PF10672 S-adenosylmethionine-dependent methyltransferase AL543_16720 PF01170 Putative RNA methylase family UPF0020 AL543_16720 PF02926 THUMP domain AL543_16725 PF07126 Cell-division protein ZapC AL543_16730 PF01180 Dihydroorotate dehydrogenase AL543_16735 PF05088 Bacterial NAD-glutamate dehydrogenase AL543_16745 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL543_16745 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL543_16745 PF01433 Peptidase family M1 domain AL543_16755 PF03572 Peptidase family S41 AL543_16755 PF00595 PDZ domain AL543_16755 PF11818 C-terminal domain of tail specific protease (DUF3340) AL543_16755 PF17804 Tail specific protease N-terminal domain AL543_16760 PF17516 ProQ C-terminal domain AL543_16760 PF04352 ProQ/FINO family AL543_16765 PF13185 GAF domain AL543_16775 PF04403 Paraquat-inducible protein A AL543_16780 PF02470 MlaD protein AL543_16785 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AL543_16785 PF01189 16S rRNA methyltransferase RsmB/F AL543_16785 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AL543_16790 PF13509 S1 domain AL543_16790 PF17783 CvfB-like winged helix domain AL543_16805 PF00793 DAHP synthetase I family AL543_16810 PF04461 Protein of unknown function (DUF520) AL543_16815 PF02146 Sir2 family AL543_16820 PF00909 Ammonium Transporter Family AL543_16840 PF13247 4Fe-4S dicluster domain AL543_16845 PF00384 Molybdopterin oxidoreductase AL543_16845 PF01568 Molydopterin dinucleotide binding domain AL543_16845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL543_16855 PF02613 Nitrate reductase delta subunit AL543_16875 PF02634 FdhD/NarQ family AL543_16880 PF02743 Cache domain AL543_16880 PF00672 HAMP domain AL543_16880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_16885 PF12848 ABC transporter AL543_16885 PF00005 ABC transporter AL543_16890 PF00989 PAS fold AL543_16890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_16890 PF00512 His Kinase A (phospho-acceptor) domain AL543_16895 PF00158 Sigma-54 interaction domain AL543_16895 PF00072 Response regulator receiver domain AL543_16895 PF02954 Bacterial regulatory protein, Fis family AL543_16900 PF12849 PBP superfamily domain AL543_16905 PF00528 Binding-protein-dependent transport system inner membrane component AL543_16910 PF00005 ABC transporter AL543_16910 PF08402 TOBE domain AL543_16915 PF12804 MobA-like NTP transferase domain AL543_16920 PF03454 MoeA C-terminal region (domain IV) AL543_16920 PF03453 MoeA N-terminal region (domain I and II) AL543_16920 PF00994 Probable molybdopterin binding domain AL543_16930 PF00480 ROK family AL543_16945 PF12729 Four helix bundle sensory module for signal transduction AL543_16945 PF00672 HAMP domain AL543_16945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_16950 PF00877 NlpC/P60 family AL543_16970 PF01554 MatE AL543_16980 PF14743 DNA ligase OB-like domain AL543_16980 PF01068 ATP dependent DNA ligase domain AL543_16995 PF02472 Biopolymer transport protein ExbD/TolR AL543_17000 PF01618 MotA/TolQ/ExbB proton channel family AL543_17005 PF01618 MotA/TolQ/ExbB proton channel family AL543_17020 PF13416 Bacterial extracellular solute-binding protein AL543_17025 PF00528 Binding-protein-dependent transport system inner membrane component AL543_17030 PF00528 Binding-protein-dependent transport system inner membrane component AL543_17035 PF00005 ABC transporter AL543_17035 PF17912 MalK OB fold domain AL543_17040 PF08220 DeoR-like helix-turn-helix domain AL543_17040 PF00455 DeoR C terminal sensor domain AL543_17045 PF03009 Glycerophosphoryl diester phosphodiesterase family AL543_17050 PF04074 YhcH/YjgK/YiaL AL543_17060 PF00356 Bacterial regulatory proteins, lacI family AL543_17065 PF00232 Glycosyl hydrolase family 1 AL543_17070 PF00141 Peroxidase AL543_17075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_17075 PF03466 LysR substrate binding domain AL543_17095 PF12704 MacB-like periplasmic core domain AL543_17095 PF02687 FtsX-like permease family AL543_17100 PF02687 FtsX-like permease family AL543_17100 PF12704 MacB-like periplasmic core domain AL543_17100 PF00005 ABC transporter AL543_17105 PF00005 ABC transporter AL543_17105 PF12704 MacB-like periplasmic core domain AL543_17105 PF02687 FtsX-like permease family AL543_17110 PF00268 Ribonucleotide reductase, small chain AL543_17115 PF08343 Ribonucleotide reductase N-terminal AL543_17115 PF00317 Ribonucleotide reductase, all-alpha domain AL543_17115 PF02867 Ribonucleotide reductase, barrel domain AL543_17120 PF07972 NrdI Flavodoxin like AL543_17125 PF00462 Glutaredoxin AL543_17130 PF02657 Fe-S metabolism associated domain AL543_17135 PF00266 Aminotransferase class-V AL543_17140 PF01458 Uncharacterized protein family (UPF0051) AL543_17145 PF00005 ABC transporter AL543_17150 PF01458 Uncharacterized protein family (UPF0051) AL543_17155 PF01521 Iron-sulphur cluster biosynthesis AL543_17165 PF10415 Fumarase C C-terminus AL543_17165 PF00206 Lyase AL543_17190 PF00080 Copper/zinc superoxide dismutase (SODC) AL543_17200 PF06628 Catalase-related immune-responsive AL543_17200 PF00199 Catalase AL543_17210 PF13402 Peptidase M60, enhancin and enhancin-like AL543_17210 PF17291 N-terminal domain of M60-like peptidases AL543_17210 PF13322 Domain of unknown function (DUF4092) AL543_17220 PF01263 Aldose 1-epimerase AL543_17225 PF10509 Galactokinase galactose-binding signature AL543_17225 PF00288 GHMP kinases N terminal domain AL543_17225 PF08544 GHMP kinases C terminal AL543_17230 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AL543_17230 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AL543_17235 PF07690 Major Facilitator Superfamily AL543_17250 PF00990 Diguanylate cyclase, GGDEF domain AL543_17250 PF00072 Response regulator receiver domain AL543_17265 PF01584 CheW-like domain AL543_17265 PF00072 Response regulator receiver domain AL543_17275 PF00072 Response regulator receiver domain AL543_17275 PF12431 Transcriptional regulator AL543_17280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_17280 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL543_17280 PF00989 PAS fold AL543_17280 PF17203 Single cache domain 3 AL543_17295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL543_17315 PF04204 Homoserine O-succinyltransferase AL543_17330 PF05971 RNA methyltransferase AL543_17335 PF01863 Protein of unknown function DUF45 AL543_17345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_17345 PF03466 LysR substrate binding domain AL543_17365 PF02321 Outer membrane efflux protein AL543_17370 PF05736 OprF membrane domain AL543_17370 PF00691 OmpA family AL543_17380 PF16653 Saccharopine dehydrogenase C-terminal domain AL543_17380 PF03435 Saccharopine dehydrogenase NADP binding domain AL543_17385 PF00202 Aminotransferase class-III AL543_17390 PF13358 DDE superfamily endonuclease AL543_17395 PF06965 Na+/H+ antiporter 1 AL543_17410 PF00005 ABC transporter AL543_17415 PF01554 MatE AL543_17420 PF13460 NAD(P)H-binding AL543_17420 PF11066 Protein of unknown function (DUF2867) AL543_17430 PF07690 Major Facilitator Superfamily AL543_17435 PF01479 S4 domain AL543_17435 PF00849 RNA pseudouridylate synthase AL543_17440 PF00271 Helicase conserved C-terminal domain AL543_17440 PF04851 Type III restriction enzyme, res subunit AL543_17450 PF00072 Response regulator receiver domain AL543_17450 PF00486 Transcriptional regulatory protein, C terminal AL543_17460 PF01386 Ribosomal L25p family AL543_17505 PF13533 Biotin-lipoyl like AL543_17510 PF00873 AcrB/AcrD/AcrF family AL543_17545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_17545 PF12793 Sugar transport-related sRNA regulator N-term AL543_17555 PF01752 Collagenase AL543_17555 PF08453 Peptidase family M9 N-terminal AL543_17555 PF04151 Bacterial pre-peptidase C-terminal domain AL543_17565 PF03707 Bacterial signalling protein N terminal repeat AL543_17565 PF00990 Diguanylate cyclase, GGDEF domain AL543_17565 PF00563 EAL domain AL543_17570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_17570 PF00072 Response regulator receiver domain AL543_17570 PF09456 RcsC Alpha-Beta-Loop (ABL) AL543_17570 PF00512 His Kinase A (phospho-acceptor) domain AL543_17575 PF03448 MgtE intracellular N domain AL543_17575 PF01769 Divalent cation transporter AL543_17575 PF00571 CBS domain AL543_17585 PF03222 Tryptophan/tyrosine permease family AL543_17590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL543_17595 PF00005 ABC transporter AL543_17610 PF06945 Protein of unknown function (DUF1289) AL543_17620 PF13416 Bacterial extracellular solute-binding protein AL543_17625 PF00528 Binding-protein-dependent transport system inner membrane component AL543_17630 PF00005 ABC transporter AL543_17635 PF01066 CDP-alcohol phosphatidyltransferase AL543_17640 PF00849 RNA pseudouridylate synthase AL543_17645 PF00209 Sodium:neurotransmitter symporter family AL543_17650 PF13396 Phospholipase_D-nuclease N-terminal AL543_17650 PF13091 PLD-like domain AL543_17655 PF01053 Cys/Met metabolism PLP-dependent enzyme AL543_17660 PF03352 Methyladenine glycosylase AL543_17665 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AL543_17665 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL543_17680 PF04012 PspA/IM30 family AL543_17685 PF02954 Bacterial regulatory protein, Fis family AL543_17685 PF00158 Sigma-54 interaction domain AL543_17690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_17695 PF00528 Binding-protein-dependent transport system inner membrane component AL543_17700 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_17700 PF00528 Binding-protein-dependent transport system inner membrane component AL543_17705 PF00005 ABC transporter AL543_17705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_17710 PF00005 ABC transporter AL543_17725 PF02833 DHHA2 domain AL543_17725 PF01368 DHH family AL543_17735 PF03193 RsgA GTPase AL543_17745 PF01797 Transposase IS200 like AL543_17750 PF01797 Transposase IS200 like AL543_17755 PF18364 Molybdopterin oxidoreductase N-terminal domain AL543_17755 PF01568 Molydopterin dinucleotide binding domain AL543_17755 PF00384 Molybdopterin oxidoreductase AL543_17760 PF03264 NapC/NirT cytochrome c family, N-terminal region AL543_17765 PF06796 Periplasmic nitrate reductase protein NapE AL543_17775 PF01226 Formate/nitrite transporter AL543_17785 PF01370 NAD dependent epimerase/dehydratase family AL543_17790 PF02698 DUF218 domain AL543_17800 PF00563 EAL domain AL543_17800 PF00990 Diguanylate cyclase, GGDEF domain AL543_17800 PF03707 Bacterial signalling protein N terminal repeat AL543_17805 PF04279 Intracellular septation protein A AL543_17810 PF03061 Thioesterase superfamily AL543_17815 PF03795 YCII-related domain AL543_17825 PF01717 Cobalamin-independent synthase, Catalytic domain AL543_17825 PF08267 Cobalamin-independent synthase, N-terminal domain AL543_17830 PF03466 LysR substrate binding domain AL543_17830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_17845 PF00675 Insulinase (Peptidase family M16) AL543_17845 PF05193 Peptidase M16 inactive domain AL543_17850 PF00989 PAS fold AL543_17850 PF00990 Diguanylate cyclase, GGDEF domain AL543_17850 PF01590 GAF domain AL543_17850 PF00563 EAL domain AL543_17855 PF11842 Domain of unknown function (DUF3362) AL543_17855 PF08497 Radical SAM N-terminal AL543_17855 PF04055 Radical SAM superfamily AL543_17860 PF01810 LysE type translocator AL543_17865 PF01037 Lrp/AsnC ligand binding domain AL543_17870 PF04310 MukB N-terminal AL543_17870 PF16330 MukB hinge domain AL543_17875 PF04288 MukE-like family AL543_17880 PF03882 MukF winged-helix domain AL543_17880 PF17193 MukF C-terminal domain AL543_17880 PF17192 MukF middle domain AL543_17890 PF02698 DUF218 domain AL543_17895 PF00486 Transcriptional regulatory protein, C terminal AL543_17895 PF00072 Response regulator receiver domain AL543_17900 PF02613 Nitrate reductase delta subunit AL543_17905 PF00356 Bacterial regulatory proteins, lacI family AL543_17910 PF04994 TfoX C-terminal domain AL543_17910 PF04993 TfoX N-terminal domain AL543_17930 PF00534 Glycosyl transferases group 1 AL543_17930 PF08323 Starch synthase catalytic domain AL543_17935 PF00483 Nucleotidyl transferase AL543_17940 PF01797 Transposase IS200 like AL543_17945 PF01131 DNA topoisomerase AL543_17945 PF01396 Topoisomerase DNA binding C4 zinc finger AL543_17945 PF01751 Toprim domain AL543_17945 PF08272 Topoisomerase I zinc-ribbon-like AL543_17950 PF10692 Protein of unknown function (DUF2498) AL543_17955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL543_17965 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AL543_17970 PF04377 Arginine-tRNA-protein transferase, C terminus AL543_17970 PF04376 Arginine-tRNA-protein transferase, N terminus AL543_17975 PF01176 Translation initiation factor 1A / IF-1 AL543_17980 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL543_17980 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL543_17980 PF07055 Enoyl reductase FAD binding domain AL543_17985 PF09317 Domain of unknown function (DUF1974) AL543_17985 PF02770 Acyl-CoA dehydrogenase, middle domain AL543_17985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL543_17985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL543_17990 PF16295 Tetracyclin repressor-like, C-terminal domain AL543_17990 PF00440 Bacterial regulatory proteins, tetR family AL543_18000 PF07383 Protein of unknown function (DUF1496) AL543_18005 PF00171 Aldehyde dehydrogenase family AL543_18010 PF08362 YcdC-like protein, C-terminal region AL543_18010 PF00440 Bacterial regulatory proteins, tetR family AL543_18015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL543_18020 PF00873 AcrB/AcrD/AcrF family AL543_18025 PF13358 DDE superfamily endonuclease AL543_18030 PF00563 EAL domain AL543_18030 PF00196 Bacterial regulatory proteins, luxR family AL543_18035 PF03575 Peptidase family S51 AL543_18040 PF01546 Peptidase family M20/M25/M40 AL543_18040 PF07687 Peptidase dimerisation domain AL543_18045 PF03606 C4-dicarboxylate anaerobic carrier AL543_18050 PF01418 Helix-turn-helix domain, rpiR family AL543_18050 PF01380 SIS domain AL543_18080 PF00437 Type II/IV secretion system protein AL543_18110 PF13629 Pilus formation protein N terminal region AL543_18110 PF04972 BON domain AL543_18110 PF00263 Bacterial type II and III secretion system protein AL543_18140 PF02311 AraC-like ligand binding domain AL543_18140 PF12833 Helix-turn-helix domain AL543_18145 PF16338 Domain of unknown function (DUF4968) AL543_18145 PF17137 Domain of unknown function (DUF5110) AL543_18145 PF13802 Galactose mutarotase-like AL543_18145 PF01055 Glycosyl hydrolases family 31 AL543_18155 PF13186 Iron-sulfur cluster-binding domain AL543_18155 PF04055 Radical SAM superfamily AL543_18160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_18160 PF03466 LysR substrate binding domain AL543_18175 PF01970 Tripartite tricarboxylate transporter TctA family AL543_18180 PF16347 Domain of unknown function (DUF4976) AL543_18180 PF00884 Sulfatase AL543_18200 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL543_18200 PF07971 Glycosyl hydrolase family 92 AL543_18210 PF07971 Glycosyl hydrolase family 92 AL543_18210 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL543_18215 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL543_18215 PF07971 Glycosyl hydrolase family 92 AL543_18225 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL543_18225 PF07971 Glycosyl hydrolase family 92 AL543_18235 PF00392 Bacterial regulatory proteins, gntR family AL543_18235 PF00155 Aminotransferase class I and II AL543_18245 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL543_18255 PF12833 Helix-turn-helix domain AL543_18260 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL543_18260 PF02378 Phosphotransferase system, EIIC AL543_18260 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL543_18265 PF01238 Phosphomannose isomerase type I AL543_18270 PF06610 L-alanine exporter AL543_18275 PF00512 His Kinase A (phospho-acceptor) domain AL543_18275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_18275 PF00072 Response regulator receiver domain AL543_18275 PF09308 LuxQ, periplasmic AL543_18285 PF02445 Quinolinate synthetase A protein AL543_18295 PF00691 OmpA family AL543_18300 PF07676 WD40-like Beta Propeller Repeat AL543_18300 PF04052 TolB amino-terminal domain AL543_18310 PF02472 Biopolymer transport protein ExbD/TolR AL543_18315 PF01618 MotA/TolQ/ExbB proton channel family AL543_18320 PF03061 Thioesterase superfamily AL543_18330 PF08173 Membrane bound YbgT-like protein AL543_18335 PF02322 Cytochrome bd terminal oxidase subunit II AL543_18340 PF01654 Cytochrome bd terminal oxidase subunit I AL543_18345 PF05491 RuvB C-terminal winged helix domain AL543_18345 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL543_18345 PF17864 RuvB AAA lid domain AL543_18350 PF01330 RuvA N terminal domain AL543_18350 PF07499 RuvA, C-terminal domain AL543_18355 PF02075 Crossover junction endodeoxyribonuclease RuvC AL543_18360 PF01406 tRNA synthetases class I (C) catalytic domain AL543_18360 PF09190 DALR domain AL543_18365 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL543_18370 PF00149 Calcineurin-like phosphoesterase AL543_18375 PF00563 EAL domain AL543_18375 PF08668 HDOD domain AL543_18380 PF02810 SEC-C motif AL543_18385 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL543_18400 PF13307 Helicase C-terminal domain AL543_18400 PF06733 DEAD_2 AL543_18405 PF01925 Sulfite exporter TauE/SafE AL543_18410 PF07445 Primosomal replication protein priC AL543_18415 PF10689 Protein of unknown function (DUF2496) AL543_18420 PF00672 HAMP domain AL543_18420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_18425 PF03372 Endonuclease/Exonuclease/phosphatase family AL543_18430 PF00528 Binding-protein-dependent transport system inner membrane component AL543_18435 PF00528 Binding-protein-dependent transport system inner membrane component AL543_18440 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_18445 PF00005 ABC transporter AL543_18455 PF02901 Pyruvate formate lyase-like AL543_18455 PF01228 Glycine radical AL543_18465 PF12729 Four helix bundle sensory module for signal transduction AL543_18465 PF00672 HAMP domain AL543_18465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_18470 PF04055 Radical SAM superfamily AL543_18480 PF03887 YfbU domain AL543_18485 PF08298 PrkA AAA domain AL543_18485 PF06798 PrkA serine protein kinase C-terminal domain AL543_18490 PF04285 Protein of unknown function (DUF444) AL543_18495 PF04293 SpoVR like protein AL543_18500 PF00367 phosphotransferase system, EIIB AL543_18500 PF02378 Phosphotransferase system, EIIC AL543_18505 PF00072 Response regulator receiver domain AL543_18505 PF00486 Transcriptional regulatory protein, C terminal AL543_18510 PF08521 Two-component sensor kinase N-terminal AL543_18510 PF00512 His Kinase A (phospho-acceptor) domain AL543_18510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_18520 PF01609 Transposase DDE domain AL543_18520 PF13006 Insertion element 4 transposase N-terminal AL543_18525 PF02348 Cytidylyltransferase AL543_18530 PF03966 Trm112p-like protein AL543_18535 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AL543_18540 PF00664 ABC transporter transmembrane region AL543_18540 PF00005 ABC transporter AL543_18545 PF00753 Metallo-beta-lactamase superfamily AL543_18545 PF03772 Competence protein AL543_18545 PF13567 Domain of unknown function (DUF4131) AL543_18555 PF02687 FtsX-like permease family AL543_18555 PF12704 MacB-like periplasmic core domain AL543_18560 PF00005 ABC transporter AL543_18565 PF12704 MacB-like periplasmic core domain AL543_18565 PF02687 FtsX-like permease family AL543_18575 PF02559 CarD-like/TRCF domain AL543_18575 PF00270 DEAD/DEAH box helicase AL543_18575 PF03461 TRCF domain AL543_18575 PF17757 UvrB interaction domain AL543_18575 PF00271 Helicase conserved C-terminal domain AL543_18590 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_18595 PF05728 Uncharacterised protein family (UPF0227) AL543_18600 PF01636 Phosphotransferase enzyme family AL543_18605 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL543_18605 PF13036 Peptidoglycan-synthase activator LpoB AL543_18620 PF01230 HIT domain AL543_18625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_18625 PF00672 HAMP domain AL543_18635 PF00392 Bacterial regulatory proteins, gntR family AL543_18635 PF07840 FadR C-terminal domain AL543_18640 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AL543_18645 PF02600 Disulfide bond formation protein DsbB AL543_18650 PF09397 Ftsk gamma domain AL543_18650 PF01580 FtsK/SpoIIIE family AL543_18650 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL543_18650 PF17854 FtsK alpha domain AL543_18655 PF01037 Lrp/AsnC ligand binding domain AL543_18660 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL543_18660 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL543_18670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_18670 PF03466 LysR substrate binding domain AL543_18680 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AL543_18685 PF01797 Transposase IS200 like AL543_18700 PF00005 ABC transporter AL543_18700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_18705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_18705 PF00005 ABC transporter AL543_18710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_18715 PF00528 Binding-protein-dependent transport system inner membrane component AL543_18715 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_18720 PF00528 Binding-protein-dependent transport system inner membrane component AL543_18750 PF10531 SLBB domain AL543_18750 PF02563 Polysaccharide biosynthesis/export protein AL543_18765 PF02954 Bacterial regulatory protein, Fis family AL543_18765 PF00072 Response regulator receiver domain AL543_18765 PF00158 Sigma-54 interaction domain AL543_18775 PF13439 Glycosyltransferase Family 4 AL543_18775 PF00534 Glycosyl transferases group 1 AL543_18795 PF12464 Maltose acetyltransferase AL543_18795 PF14602 Hexapeptide repeat of succinyl-transferase AL543_18795 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_18810 PF00534 Glycosyl transferases group 1 AL543_18815 PF00535 Glycosyl transferase family 2 AL543_18820 PF02397 Bacterial sugar transferase AL543_18830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_18830 PF00512 His Kinase A (phospho-acceptor) domain AL543_18830 PF09308 LuxQ, periplasmic AL543_18830 PF00072 Response regulator receiver domain AL543_18835 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL543_18840 PF18073 Rubredoxin metal binding domain AL543_18845 PF06305 Lipopolysaccharide assembly protein A domain AL543_18850 PF00216 Bacterial DNA-binding protein AL543_18855 PF00575 S1 RNA binding domain AL543_18860 PF02224 Cytidylate kinase AL543_18870 PF13145 PPIC-type PPIASE domain AL543_18875 PF00216 Bacterial DNA-binding protein AL543_18880 PF05362 Lon protease (S16) C-terminal proteolytic domain AL543_18880 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL543_18880 PF00004 ATPase family associated with various cellular activities (AAA) AL543_18885 PF10431 C-terminal, D2-small domain, of ClpB protein AL543_18885 PF07724 AAA domain (Cdc48 subfamily) AL543_18885 PF06689 ClpX C4-type zinc finger AL543_18890 PF00574 Clp protease AL543_18895 PF05698 Bacterial trigger factor protein (TF) C-terminus AL543_18895 PF05697 Bacterial trigger factor protein (TF) AL543_18895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL543_18905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_18905 PF02743 Cache domain AL543_18905 PF00512 His Kinase A (phospho-acceptor) domain AL543_18910 PF00072 Response regulator receiver domain AL543_18910 PF02954 Bacterial regulatory protein, Fis family AL543_18910 PF00158 Sigma-54 interaction domain AL543_18915 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL543_18920 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL543_18925 PF03480 Bacterial extracellular solute-binding protein, family 7 AL543_18930 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL543_18945 PF00563 EAL domain AL543_18945 PF00990 Diguanylate cyclase, GGDEF domain AL543_18945 PF03707 Bacterial signalling protein N terminal repeat AL543_18970 PF01569 PAP2 superfamily AL543_18985 PF08402 TOBE domain AL543_18985 PF00005 ABC transporter AL543_18990 PF00528 Binding-protein-dependent transport system inner membrane component AL543_19015 PF13340 Putative transposase of IS4/5 family (DUF4096) AL543_19035 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL543_19035 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL543_19045 PF00704 Glycosyl hydrolases family 18 AL543_19050 PF07670 Nucleoside recognition AL543_19050 PF07662 Na+ dependent nucleoside transporter C-terminus AL543_19050 PF01773 Na+ dependent nucleoside transporter N-terminus AL543_19055 PF03466 LysR substrate binding domain AL543_19055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_19060 PF13406 Transglycosylase SLT domain AL543_19065 PF05166 YcgL domain AL543_19070 PF05209 Septum formation inhibitor MinC, N-terminal domain AL543_19070 PF03775 Septum formation inhibitor MinC, C-terminal domain AL543_19075 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL543_19080 PF03776 Septum formation topological specificity factor MinE AL543_19085 PF04170 NlpE N-terminal domain AL543_19105 PF07690 Major Facilitator Superfamily AL543_19110 PF02743 Cache domain AL543_19110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_19110 PF00672 HAMP domain AL543_19115 PF07883 Cupin domain AL543_19115 PF01381 Helix-turn-helix AL543_19120 PF03594 Benzoate membrane transport protein AL543_19125 PF13193 AMP-binding enzyme C-terminal domain AL543_19125 PF00501 AMP-binding enzyme AL543_19130 PF13378 Enolase C-terminal domain-like AL543_19135 PF00378 Enoyl-CoA hydratase/isomerase AL543_19140 PF12697 Alpha/beta hydrolase family AL543_19145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL543_19145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL543_19145 PF16582 Middle domain of thiamine pyrophosphate AL543_19150 PF00425 chorismate binding enzyme AL543_19155 PF00155 Aminotransferase class I and II AL543_19165 PF13286 Phosphohydrolase-associated domain AL543_19165 PF01966 HD domain AL543_19175 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL543_19175 PF01694 Rhomboid family AL543_19185 PF01612 3'-5' exonuclease AL543_19185 PF00570 HRDC domain AL543_19190 PF13193 AMP-binding enzyme C-terminal domain AL543_19190 PF00501 AMP-binding enzyme AL543_19195 PF00561 alpha/beta hydrolase fold AL543_19210 PF00814 Glycoprotease family AL543_19215 PF13307 Helicase C-terminal domain AL543_19215 PF04851 Type III restriction enzyme, res subunit AL543_19225 PF01842 ACT domain AL543_19225 PF00551 Formyl transferase AL543_19230 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_19230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL543_19235 PF01343 Peptidase family S49 AL543_19240 PF17763 Glutaminase/Asparaginase C-terminal domain AL543_19240 PF00710 Asparaginase, N-terminal AL543_19245 PF07023 Protein of unknown function (DUF1315) AL543_19255 PF01641 SelR domain AL543_19260 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL543_19260 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL543_19265 PF01263 Aldose 1-epimerase AL543_19275 PF13847 Methyltransferase domain AL543_19295 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_19305 PF01584 CheW-like domain AL543_19305 PF00072 Response regulator receiver domain AL543_19310 PF00480 ROK family AL543_19315 PF02887 Pyruvate kinase, alpha/beta domain AL543_19315 PF00224 Pyruvate kinase, barrel domain AL543_19320 PF01734 Patatin-like phospholipase AL543_19330 PF00209 Sodium:neurotransmitter symporter family AL543_19340 PF00367 phosphotransferase system, EIIB AL543_19340 PF02378 Phosphotransferase system, EIIC AL543_19345 PF01026 TatD related DNase AL543_19350 PF09115 DNA polymerase III, delta subunit, C terminal AL543_19355 PF02223 Thymidylate kinase AL543_19360 PF02618 YceG-like family AL543_19365 PF01063 Amino-transferase class IV AL543_19370 PF00109 Beta-ketoacyl synthase, N-terminal domain AL543_19370 PF02801 Beta-ketoacyl synthase, C-terminal domain AL543_19375 PF00550 Phosphopantetheine attachment site AL543_19385 PF00698 Acyl transferase domain AL543_19390 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL543_19390 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL543_19395 PF02504 Fatty acid synthesis protein AL543_19400 PF01783 Ribosomal L32p protein family AL543_19405 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL543_19410 PF02545 Maf-like protein AL543_19415 PF01479 S4 domain AL543_19415 PF00849 RNA pseudouridylate synthase AL543_19425 PF10150 Ribonuclease E/G family AL543_19425 PF12111 Polyribonucleotide phosphorylase C terminal AL543_19425 PF00575 S1 RNA binding domain AL543_19430 PF01740 STAS domain AL543_19430 PF00916 Sulfate permease family AL543_19440 PF01609 Transposase DDE domain AL543_19440 PF13006 Insertion element 4 transposase N-terminal AL543_19445 PF00171 Aldehyde dehydrogenase family AL543_19445 PF00465 Iron-containing alcohol dehydrogenase AL543_19450 PF01914 MarC family integral membrane protein AL543_19455 PF00520 Ion transport protein AL543_19455 PF00027 Cyclic nucleotide-binding domain AL543_19460 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL543_19460 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL543_19465 PF03553 Na+/H+ antiporter family AL543_19475 PF04245 37-kD nucleoid-associated bacterial protein AL543_19480 PF07208 Protein of unknown function (DUF1414) AL543_19485 PF00884 Sulfatase AL543_19485 PF11893 Domain of unknown function (DUF3413) AL543_19505 PF13358 DDE superfamily endonuclease AL543_19515 PF00106 short chain dehydrogenase AL543_19530 PF00850 Histone deacetylase domain AL543_19535 PF01131 DNA topoisomerase AL543_19535 PF01751 Toprim domain AL543_19540 PF00462 Glutaredoxin AL543_19545 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL543_19545 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL543_19560 PF04333 MlaA lipoprotein AL543_19570 PF03918 Cytochrome C biogenesis protein AL543_19575 PF08534 Redoxin AL543_19580 PF01578 Cytochrome C assembly protein AL543_19580 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL543_19585 PF03100 CcmE AL543_19595 PF01578 Cytochrome C assembly protein AL543_19600 PF03379 CcmB protein AL543_19605 PF00005 ABC transporter AL543_19615 PF01584 CheW-like domain AL543_19625 PF13614 AAA domain AL543_19630 PF01339 CheB methylesterase AL543_19630 PF00072 Response regulator receiver domain AL543_19635 PF07194 P2 response regulator binding domain AL543_19635 PF01584 CheW-like domain AL543_19635 PF02895 Signal transducing histidine kinase, homodimeric domain AL543_19635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_19635 PF01627 Hpt domain AL543_19640 PF04344 Chemotaxis phosphatase, CheZ AL543_19645 PF00072 Response regulator receiver domain AL543_19650 PF04545 Sigma-70, region 4 AL543_19650 PF04539 Sigma-70 region 3 AL543_19650 PF04542 Sigma-70 region 2 AL543_19655 PF10609 NUBPL iron-transfer P-loop NTPase AL543_19660 PF00448 SRP54-type protein, GTPase domain AL543_19665 PF00771 FHIPEP family AL543_19670 PF00300 Histidine phosphatase superfamily (branch 1) AL543_19675 PF05193 Peptidase M16 inactive domain AL543_19675 PF00675 Insulinase (Peptidase family M16) AL543_19685 PF05746 DALR anticodon binding domain AL543_19685 PF03485 Arginyl tRNA synthetase N terminal domain AL543_19685 PF00750 tRNA synthetases class I (R) AL543_19700 PF07670 Nucleoside recognition AL543_19700 PF02421 Ferrous iron transport protein B AL543_19700 PF07664 Ferrous iron transport protein B C terminus AL543_19705 PF04023 FeoA domain AL543_19710 PF12833 Helix-turn-helix domain AL543_19710 PF02311 AraC-like ligand binding domain AL543_19715 PF01297 Zinc-uptake complex component A periplasmic AL543_19720 PF00005 ABC transporter AL543_19725 PF00950 ABC 3 transport family AL543_19730 PF00549 CoA-ligase AL543_19730 PF02629 CoA binding domain AL543_19735 PF00549 CoA-ligase AL543_19735 PF08442 ATP-grasp domain AL543_19740 PF02817 e3 binding domain AL543_19740 PF00364 Biotin-requiring enzyme AL543_19740 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL543_19745 PF02779 Transketolase, pyrimidine binding domain AL543_19745 PF00676 Dehydrogenase E1 component AL543_19745 PF16078 2-oxoglutarate dehydrogenase N-terminus AL543_19745 PF16870 2-oxoglutarate dehydrogenase C-terminal AL543_19750 PF13085 2Fe-2S iron-sulfur cluster binding domain AL543_19755 PF02910 Fumarate reductase flavoprotein C-term AL543_19755 PF00890 FAD binding domain AL543_19760 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL543_19765 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL543_19770 PF00285 Citrate synthase, C-terminal domain AL543_19775 PF01784 NIF3 (NGG1p interacting factor 3) AL543_19785 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL543_19785 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL543_19785 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL543_19785 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL543_19790 PF17206 SeqA protein N-terminal domain AL543_19790 PF03925 SeqA protein C-terminal domain AL543_19795 PF12697 Alpha/beta hydrolase family AL543_19805 PF00258 Flavodoxin AL543_19810 PF04172 LrgB-like family AL543_19815 PF03788 LrgA family AL543_19820 PF03466 LysR substrate binding domain AL543_19820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_19830 PF01475 Ferric uptake regulator family AL543_19835 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL543_19835 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL543_19840 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL543_19840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL543_19840 PF11890 Domain of unknown function (DUF3410) AL543_19845 PF00109 Beta-ketoacyl synthase, N-terminal domain AL543_19845 PF02801 Beta-ketoacyl synthase, C-terminal domain AL543_19850 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL543_19850 PF01266 FAD dependent oxidoreductase AL543_19855 PF03358 NADPH-dependent FMN reductase AL543_19860 PF08891 YfcL protein AL543_19865 PF04315 Elongation factor P hydroxylase AL543_19870 PF03458 UPF0126 domain AL543_19875 PF01264 Chorismate synthase AL543_19885 PF05175 Methyltransferase small domain AL543_19890 PF01713 Smr domain AL543_19895 PF01312 FlhB HrpN YscU SpaS Family AL543_19900 PF01311 Bacterial export proteins, family 1 AL543_19905 PF01313 Bacterial export proteins, family 3 AL543_19910 PF00813 FliP family AL543_19915 PF04347 Flagellar biosynthesis protein, FliO AL543_19920 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL543_19925 PF02154 Flagellar motor switch protein FliM AL543_19925 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL543_19945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL543_19945 PF18269 T3SS EscN ATPase C-terminal domain AL543_19950 PF02108 Flagellar assembly protein FliH AL543_19955 PF14842 FliG N-terminal domain AL543_19955 PF14841 FliG middle domain AL543_19955 PF01706 FliG C-terminal domain AL543_19960 PF01514 Secretory protein of YscJ/FliF family AL543_19960 PF08345 Flagellar M-ring protein C-terminal AL543_19965 PF02049 Flagellar hook-basal body complex protein FliE AL543_19970 PF00158 Sigma-54 interaction domain AL543_19970 PF02954 Bacterial regulatory protein, Fis family AL543_19970 PF00072 Response regulator receiver domain AL543_19975 PF00512 His Kinase A (phospho-acceptor) domain AL543_19975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_19980 PF00158 Sigma-54 interaction domain AL543_19980 PF02954 Bacterial regulatory protein, Fis family AL543_19980 PF00072 Response regulator receiver domain AL543_19985 PF02561 Flagellar protein FliS AL543_19995 PF07195 Flagellar hook-associated protein 2 C-terminus AL543_19995 PF02465 Flagellar hook-associated protein 2 N-terminus AL543_19995 PF07196 Flagellin hook IN motif AL543_20000 PF03646 FlaG protein AL543_20005 PF00669 Bacterial flagellin N-terminal helical region AL543_20005 PF07196 Flagellin hook IN motif AL543_20005 PF00700 Bacterial flagellin C-terminal helical region AL543_20010 PF00669 Bacterial flagellin N-terminal helical region AL543_20010 PF07196 Flagellin hook IN motif AL543_20010 PF00700 Bacterial flagellin C-terminal helical region AL543_20015 PF00700 Bacterial flagellin C-terminal helical region AL543_20015 PF00669 Bacterial flagellin N-terminal helical region AL543_20015 PF07196 Flagellin hook IN motif AL543_20020 PF04261 Dyp-type peroxidase family AL543_20025 PF11143 Protein of unknown function (DUF2919) AL543_20040 PF03960 ArsC family AL543_20045 PF07687 Peptidase dimerisation domain AL543_20045 PF01546 Peptidase family M20/M25/M40 AL543_20050 PF02557 D-alanyl-D-alanine carboxypeptidase AL543_20060 PF06804 NlpB/DapX lipoprotein AL543_20065 PF00701 Dihydrodipicolinate synthetase family AL543_20075 PF00578 AhpC/TSA family AL543_20080 PF02743 Cache domain AL543_20080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_20080 PF00672 HAMP domain AL543_20085 PF01594 AI-2E family transporter AL543_20095 PF01435 Peptidase family M48 AL543_20095 PF13181 Tetratricopeptide repeat AL543_20100 PF03960 ArsC family AL543_20105 PF03358 NADPH-dependent FMN reductase AL543_20120 PF00860 Permease family AL543_20125 PF04073 Aminoacyl-tRNA editing domain AL543_20130 PF02872 5'-nucleotidase, C-terminal domain AL543_20130 PF00149 Calcineurin-like phosphoesterase AL543_20135 PF00793 DAHP synthetase I family AL543_20140 PF13369 Transglutaminase-like superfamily AL543_20145 PF04247 Invasion gene expression up-regulator, SirB AL543_20150 PF17827 PrmC N-terminal domain AL543_20150 PF13847 Methyltransferase domain AL543_20155 PF00472 RF-1 domain AL543_20155 PF03462 PCRF domain AL543_20160 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL543_20160 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL543_20160 PF01488 Shikimate / quinate 5-dehydrogenase AL543_20165 PF03550 Outer membrane lipoprotein LolB AL543_20170 PF00288 GHMP kinases N terminal domain AL543_20170 PF08544 GHMP kinases C terminal AL543_20175 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL543_20175 PF14572 Phosphoribosyl synthetase-associated domain AL543_20180 PF01195 Peptidyl-tRNA hydrolase AL543_20185 PF01926 50S ribosome-binding GTPase AL543_20185 PF06071 Protein of unknown function (DUF933) AL543_20270 PF00669 Bacterial flagellin N-terminal helical region AL543_20270 PF07196 Flagellin hook IN motif AL543_20270 PF00700 Bacterial flagellin C-terminal helical region AL543_20280 PF07196 Flagellin hook IN motif AL543_20280 PF00700 Bacterial flagellin C-terminal helical region AL543_20280 PF00669 Bacterial flagellin N-terminal helical region AL543_20290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL543_20290 PF07196 Flagellin hook IN motif AL543_20295 PF10135 Rod binding protein AL543_20295 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL543_20300 PF02119 Flagellar P-ring protein AL543_20305 PF02107 Flagellar L-ring protein AL543_20310 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL543_20310 PF00460 Flagella basal body rod protein AL543_20315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL543_20315 PF00460 Flagella basal body rod protein AL543_20320 PF07559 Flagellar basal body protein FlaE AL543_20320 PF00460 Flagella basal body rod protein AL543_20320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL543_20325 PF13861 FlgD Tudor-like domain AL543_20325 PF13860 FlgD Ig-like domain AL543_20325 PF03963 Flagellar hook capping protein - N-terminal region AL543_20330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL543_20330 PF00460 Flagella basal body rod protein AL543_20335 PF00460 Flagella basal body rod protein AL543_20350 PF03705 CheR methyltransferase, all-alpha domain AL543_20350 PF01739 CheR methyltransferase, SAM binding domain AL543_20355 PF00072 Response regulator receiver domain AL543_20355 PF01584 CheW-like domain AL543_20400 PF00691 OmpA family AL543_20400 PF01389 OmpA-like transmembrane domain AL543_20405 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL543_20410 PF00403 Heavy-metal-associated domain AL543_20420 PF02838 Glycosyl hydrolase family 20, domain 2 AL543_20420 PF00728 Glycosyl hydrolase family 20, catalytic domain AL543_20420 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL543_20420 PF03173 Putative carbohydrate binding domain AL543_20440 PF01713 Smr domain AL543_20445 PF00849 RNA pseudouridylate synthase AL543_20445 PF01479 S4 domain AL543_20455 PF00586 AIR synthase related protein, N-terminal domain AL543_20455 PF02769 AIR synthase related protein, C-terminal domain AL543_20460 PF00551 Formyl transferase AL543_20465 PF13230 Glutamine amidotransferases class-II AL543_20470 PF13580 SIS domain AL543_20475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL543_20475 PF09317 Domain of unknown function (DUF1974) AL543_20475 PF02770 Acyl-CoA dehydrogenase, middle domain AL543_20475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL543_20480 PF02322 Cytochrome bd terminal oxidase subunit II AL543_20485 PF01654 Cytochrome bd terminal oxidase subunit I AL543_20500 PF05114 Protein of unknown function (DUF692) AL543_20520 PF00929 Exonuclease AL543_20525 PF00075 RNase H AL543_20530 PF08241 Methyltransferase domain AL543_20535 PF00753 Metallo-beta-lactamase superfamily AL543_20535 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL543_20540 PF01464 Transglycosylase SLT domain AL543_20540 PF01476 LysM domain AL543_20545 PF03372 Endonuclease/Exonuclease/phosphatase family AL543_20550 PF00543 Nitrogen regulatory protein P-II AL543_20555 PF00034 Cytochrome c AL543_20560 PF09179 TilS substrate binding domain AL543_20560 PF11734 TilS substrate C-terminal domain AL543_20560 PF01171 PP-loop family AL543_20565 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AL543_20575 PF08240 Alcohol dehydrogenase GroES-like domain AL543_20575 PF00107 Zinc-binding dehydrogenase AL543_20585 PF12167 Arm DNA-binding domain AL543_20585 PF00589 Phage integrase family AL543_20785 PF04229 GrpB protein AL543_21020 PF04229 GrpB protein AL543_21225 PF04229 GrpB protein