AL543_00010	PF00884	Sulfatase
AL543_00015	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_00015	PF03466	LysR substrate binding domain
AL543_00020	PF07690	Major Facilitator Superfamily
AL543_00025	PF01717	Cobalamin-independent synthase, Catalytic domain
AL543_00035	PF13358	DDE superfamily endonuclease
AL543_00035	PF13384	Homeodomain-like domain
AL543_00035	PF13592	AL543_00035
AL543_00045	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_00045	PF13682	Chemoreceptor zinc-binding domain
AL543_00070	PF01551	Peptidase family M23
AL543_00085	PF00455	AL543_00085
AL543_00085	PF08220	DeoR-like helix-turn-helix domain
AL543_00090	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL543_00090	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL543_00095	PF07005	Protein of unknown function, DUF1537
AL543_00095	PF17042	AL543_00095
AL543_00100	PF00596	Class II Aldolase and Adducin N-terminal domain
AL543_00105	PF01261	Xylose isomerase-like TIM barrel
AL543_00110	PF01370	NAD dependent epimerase/dehydratase family
AL543_00115	PF02447	AL543_00115
AL543_00150	PF09327	AL543_00150
AL543_00185	PF13252	AL543_00185
AL543_00210	PF05838	Glycosyl hydrolase 108
AL543_00210	PF09374	Predicted Peptidoglycan domain
AL543_00215	PF16083	AL543_00215
AL543_00220	PF00145	C-5 cytosine-specific DNA methylase
AL543_00230	PF13245	Part of AAA domain
AL543_00235	PF09369	AL543_00235
AL543_00240	PF00271	Helicase conserved C-terminal domain
AL543_00265	PF13730	AL543_00265
AL543_00275	PF14549	DNA-binding transcriptional regulator Cro
AL543_00280	PF00717	Peptidase S24-like
AL543_00280	PF01381	Helix-turn-helix
AL543_00300	PF15969	AL543_00300
AL543_00310	PF00107	Zinc-binding dehydrogenase
AL543_00310	PF08240	Alcohol dehydrogenase GroES-like domain
AL543_00315	PF00155	Aminotransferase class I and II
AL543_00320	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL543_00325	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_00325	PF03466	LysR substrate binding domain
AL543_00330	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL543_00335	PF03929	AL543_00335
AL543_00345	PF00072	Response regulator receiver domain
AL543_00345	PF00990	GGDEF domain
AL543_00350	PF00072	Response regulator receiver domain
AL543_00350	PF00512	His Kinase A (phospho-acceptor) domain
AL543_00350	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_00350	PF03924	CHASE domain
AL543_00350	PF13426	PAS domain
AL543_00355	PF07361	Cytochrome b562
AL543_00365	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
AL543_00365	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
AL543_00370	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
AL543_00375	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
AL543_00375	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL543_00395	PF02595	Glycerate kinase family
AL543_00400	PF02447	AL543_00400
AL543_00405	PF05651	AL543_00405
AL543_00405	PF13556	PucR C-terminal helix-turn-helix domain
AL543_00410	PF00034	Cytochrome c
AL543_00410	PF03150	Di-haem cytochrome c peroxidase
AL543_00415	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_00420	PF01243	Pyridoxamine 5'-phosphate oxidase
AL543_00425	PF06228	Haem utilisation ChuX/HutX
AL543_00430	PF04055	Radical SAM superfamily
AL543_00435	PF03544	Gram-negative bacterial TonB protein C-terminal
AL543_00440	PF01618	AL543_00440
AL543_00445	PF02472	Biopolymer transport protein ExbD/TolR
AL543_00450	PF01497	Periplasmic binding protein
AL543_00455	PF01032	FecCD transport family
AL543_00460	PF00005	ABC transporter
AL543_00465	PF00440	Bacterial regulatory proteins, tetR family
AL543_00470	PF04175	Protein of unknown function (DUF406)
AL543_00490	PF01553	Acyltransferase
AL543_00500	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_00500	PF00672	HAMP domain
AL543_00500	PF02743	Cache domain
AL543_00505	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL543_00505	PF00175	Oxidoreductase NAD-binding domain
AL543_00505	PF00970	Oxidoreductase FAD-binding domain
AL543_00505	PF03473	MOSC domain
AL543_00505	PF03476	MOSC N-terminal beta barrel domain
AL543_00510	PF01979	Amidohydrolase family
AL543_00520	PF13358	DDE superfamily endonuclease
AL543_00520	PF13551	Winged helix-turn helix
AL543_00520	PF13592	AL543_00520
AL543_00530	PF05656	AL543_00530
AL543_00540	PF05958	tRNA (Uracil-5-)-methyltransferase
AL543_00545	PF05661	AL543_00545
AL543_00550	PF00005	ABC transporter
AL543_00550	PF12848	ABC transporter
AL543_00560	PF13487	HD domain
AL543_00565	PF00313	'Cold-shock' DNA-binding domain
AL543_00575	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL543_00580	PF02311	AraC-like ligand binding domain
AL543_00580	PF12833	Helix-turn-helix domain
AL543_00585	PF00892	EamA-like transporter family
AL543_00590	PF00990	GGDEF domain
AL543_00590	PF08448	PAS fold
AL543_00595	PF00455	AL543_00595
AL543_00595	PF08220	DeoR-like helix-turn-helix domain
AL543_00600	PF03061	Thioesterase superfamily
AL543_00605	PF00149	Calcineurin-like phosphoesterase
AL543_00605	PF02872	5'-nucleotidase, C-terminal domain
AL543_00620	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_00625	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_00625	PF14785	Maltose transport system permease protein MalF P2 domain
AL543_00630	PF13416	Bacterial extracellular solute-binding protein
AL543_00635	PF00005	ABC transporter
AL543_00635	PF08402	TOBE domain
AL543_00640	PF13302	Acetyltransferase (GNAT) domain
AL543_00645	PF07073	Modulator of Rho-dependent transcription termination (ROF)
AL543_00650	PF13640	2OG-Fe(II) oxygenase superfamily
AL543_00655	PF01906	Putative heavy-metal-binding
AL543_00660	PF00196	Bacterial regulatory proteins, luxR family
AL543_00665	PF01609	Transposase DDE domain
AL543_00670	PF00882	Zinc dependent phospholipase C
AL543_00680	PF13616	PPIC-type PPIASE domain
AL543_00685	PF00072	Response regulator receiver domain
AL543_00685	PF01584	CheW-like domain
AL543_00690	PF01047	MarR family
AL543_00695	PF00990	GGDEF domain
AL543_00705	PF01381	Helix-turn-helix
AL543_00705	PF12268	AL543_00705
AL543_00710	PF00990	GGDEF domain
AL543_00710	PF03924	CHASE domain
AL543_00715	PF13532	2OG-Fe(II) oxygenase superfamily
AL543_00720	PF12060	AL543_00720
AL543_00725	PF00892	EamA-like transporter family
AL543_00730	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_00730	PF03466	LysR substrate binding domain
AL543_00735	PF00990	GGDEF domain
AL543_00745	PF02678	Pirin
AL543_00745	PF05726	Pirin C-terminal cupin domain
AL543_00750	PF06865	Protein of unknown function (DUF1255)
AL543_00755	PF11012	AL543_00755
AL543_00760	PF07690	Major Facilitator Superfamily
AL543_00770	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_00770	PF00672	HAMP domain
AL543_00775	PF05362	Lon protease (S16) C-terminal proteolytic domain
AL543_00775	PF13654	AAA domain
AL543_00785	PF00005	ABC transporter
AL543_00785	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL543_00790	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_00790	PF03466	LysR substrate binding domain
AL543_00795	PF02652	AL543_00795
AL543_00800	PF01070	FMN-dependent dehydrogenase
AL543_00805	PF01565	FAD binding domain
AL543_00805	PF02754	AL543_00805
AL543_00805	PF02913	FAD linked oxidases, C-terminal domain
AL543_00805	PF13183	4Fe-4S dicluster domain
AL543_00810	PF01609	Transposase DDE domain
AL543_00810	PF13006	AL543_00810
AL543_00815	PF03618	AL543_00815
AL543_00820	PF00391	PEP-utilising enzyme, mobile domain
AL543_00820	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
AL543_00820	PF02896	PEP-utilising enzyme, TIM barrel domain
AL543_00825	PF07228	Stage II sporulation protein E (SpoIIE)
AL543_00830	PF13581	Histidine kinase-like ATPase domain
AL543_00845	PF01470	Pyroglutamyl peptidase
AL543_00850	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_00850	PF08447	PAS fold
AL543_00855	PF01554	MatE
AL543_00860	PF01797	Transposase IS200 like
AL543_00865	PF00793	DAHP synthetase I family
AL543_00870	PF00005	ABC transporter
AL543_00875	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_00880	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL543_00885	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_00890	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL543_00890	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL543_00890	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL543_00890	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL543_00895	PF04519	AL543_00895
AL543_00900	PF01551	Peptidase family M23
AL543_00905	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL543_00905	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL543_00905	PF02378	Phosphotransferase system, EIIC
AL543_00910	PF01232	Mannitol dehydrogenase Rossmann domain
AL543_00910	PF08125	Mannitol dehydrogenase C-terminal domain
AL543_00915	PF05068	Mannitol repressor
AL543_00920	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL543_00925	PF00753	Metallo-beta-lactamase superfamily
AL543_00935	PF03733	AL543_00935
AL543_00945	PF03358	NADPH-dependent FMN reductase
AL543_00950	PF00892	EamA-like transporter family
AL543_00955	PF12802	MarR family
AL543_00960	PF00581	Rhodanese-like domain
AL543_00965	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_00965	PF03466	LysR substrate binding domain
AL543_00970	PF03358	NADPH-dependent FMN reductase
AL543_00975	PF13743	Thioredoxin
AL543_00980	PF08240	Alcohol dehydrogenase GroES-like domain
AL543_00980	PF13602	Zinc-binding dehydrogenase
AL543_00985	PF00892	EamA-like transporter family
AL543_00990	PF13460	NADH(P)-binding
AL543_00995	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_00995	PF03466	LysR substrate binding domain
AL543_01005	PF13358	DDE superfamily endonuclease
AL543_01005	PF13384	Homeodomain-like domain
AL543_01005	PF13592	AL543_01005
AL543_01010	PF00106	short chain dehydrogenase
AL543_01015	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_01015	PF03466	LysR substrate binding domain
AL543_01020	PF00579	tRNA synthetases class I (W and Y)
AL543_01025	PF04013	Putative SAM-dependent RNA methyltransferase
AL543_01035	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AL543_01040	PF13520	Amino acid permease
AL543_01045	PF01276	Orn/Lys/Arg decarboxylase, major domain
AL543_01045	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AL543_01045	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AL543_01050	PF01609	Transposase DDE domain
AL543_01055	PF00196	Bacterial regulatory proteins, luxR family
AL543_01060	PF03176	MMPL family
AL543_01065	PF17131	AL543_01065
AL543_01075	PF00171	Aldehyde dehydrogenase family
AL543_01080	PF01037	AsnC family
AL543_01080	PF13412	Winged helix-turn-helix DNA-binding
AL543_01085	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_01085	PF00672	HAMP domain
AL543_01085	PF02743	Cache domain
AL543_01095	PF00474	Sodium:solute symporter family
AL543_01105	PF00171	Aldehyde dehydrogenase family
AL543_01105	PF01619	Proline dehydrogenase
AL543_01105	PF14850	DNA-binding domain of Proline dehydrogenase
AL543_01110	PF02311	AraC-like ligand binding domain
AL543_01110	PF12833	Helix-turn-helix domain
AL543_01115	PF08308	AL543_01115
AL543_01120	PF03781	Sulfatase-modifying factor enzyme 1
AL543_01120	PF08308	AL543_01120
AL543_01125	PF00196	Bacterial regulatory proteins, luxR family
AL543_01125	PF08448	PAS fold
AL543_01130	PF01243	Pyridoxamine 5'-phosphate oxidase
AL543_01130	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
AL543_01135	PF13437	HlyD family secretion protein
AL543_01135	PF13533	Biotin-lipoyl like
AL543_01140	PF06035	Bacterial transglutaminase-like cysteine proteinase BTLCP
AL543_01145	PF00563	EAL domain
AL543_01145	PF00990	GGDEF domain
AL543_01145	PF16448	AL543_01145
AL543_01150	PF00005	ABC transporter
AL543_01150	PF00664	ABC transporter transmembrane region
AL543_01160	PF07971	Glycosyl hydrolase family 92
AL543_01165	PF03961	AL543_01165
AL543_01170	PF00072	Response regulator receiver domain
AL543_01170	PF07228	Stage II sporulation protein E (SpoIIE)
AL543_01170	PF13581	Histidine kinase-like ATPase domain
AL543_01175	PF01740	STAS domain
AL543_01180	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_01185	PF00072	Response regulator receiver domain
AL543_01185	PF01339	CheB methylesterase
AL543_01190	PF03975	CheD chemotactic sensory transduction
AL543_01195	PF01739	CheR methyltransferase, SAM binding domain
AL543_01195	PF03705	CheR methyltransferase, all-alpha domain
AL543_01200	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_01200	PF00672	HAMP domain
AL543_01200	PF13188	PAS domain
AL543_01200	PF13426	PAS domain
AL543_01205	PF01584	CheW-like domain
AL543_01210	PF01584	CheW-like domain
AL543_01215	PF01584	CheW-like domain
AL543_01215	PF01627	Hpt domain
AL543_01215	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_01215	PF02895	Signal transducing histidine kinase, homodimeric domain
AL543_01220	PF00072	Response regulator receiver domain
AL543_01225	PF13466	STAS domain
AL543_01230	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL543_01235	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_01240	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_01245	PF00005	ABC transporter
AL543_01250	PF00884	Sulfatase
AL543_01250	PF08019	AL543_01250
AL543_01255	PF01797	Transposase IS200 like
AL543_01260	PF00512	His Kinase A (phospho-acceptor) domain
AL543_01260	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_01260	PF08521	AL543_01260
AL543_01265	PF00072	Response regulator receiver domain
AL543_01265	PF00486	Transcriptional regulatory protein, C terminal
AL543_01270	PF14559	Tetratricopeptide repeat
AL543_01275	PF00106	short chain dehydrogenase
AL543_01280	PF14518	Iron-containing redox enzyme
AL543_01285	PF00501	AMP-binding enzyme
AL543_01290	PF12261	AL543_01290
AL543_01295	PF05127	Helicase
AL543_01295	PF13718	GNAT acetyltransferase 2
AL543_01300	PF13416	Bacterial extracellular solute-binding protein
AL543_01305	PF02195	ParB-like nuclease domain
AL543_01310	PF13614	AAA domain
AL543_01320	PF11826	AL543_01320
AL543_01335	PF11686	AL543_01335
AL543_01340	PF01709	Transcriptional regulator
AL543_01345	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL543_01345	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL543_01355	PF10928	Protein of unknown function (DUF2810)
AL543_01360	PF00196	Bacterial regulatory proteins, luxR family
AL543_01365	PF00343	Carbohydrate phosphorylase
AL543_01370	PF02446	4-alpha-glucanotransferase
AL543_01375	PF00128	Alpha amylase, catalytic domain
AL543_01375	PF02806	Alpha amylase, C-terminal all-beta domain
AL543_01375	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL543_01380	PF05638	Protein of unknown function (DUF796)
AL543_01385	PF05954	Phage late control gene D protein (GPD)
AL543_01390	PF13503	AL543_01390
AL543_01405	PF01124	MAPEG family
AL543_01410	PF01757	AL543_01410
AL543_01415	PF03547	AL543_01415
AL543_01420	PF00939	Sodium:sulfate symporter transmembrane region
AL543_01425	PF09829	AL543_01425
AL543_01430	PF00704	Glycosyl hydrolases family 18
AL543_01430	PF02010	AL543_01430
AL543_01430	PF08329	Chitinase A, N-terminal domain
AL543_01435	PF01614	Bacterial transcriptional regulator
AL543_01435	PF09339	IclR helix-turn-helix domain
AL543_01440	PF00491	Arginase family
AL543_01445	PF05787	Bacterial protein of unknown function (DUF839)
AL543_01450	PF08668	HDOD domain
AL543_01455	PF01569	PAP2 superfamily
AL543_01460	PF02225	PA domain
AL543_01460	PF04389	Peptidase family M28
AL543_01465	PF00375	Sodium:dicarboxylate symporter family
AL543_01470	PF04314	Protein of unknown function (DUF461)
AL543_01475	PF02630	SCO1/SenC
AL543_01485	PF04018	AL543_01485
AL543_01490	PF03616	AL543_01490
AL543_01495	PF07238	PilZ domain
AL543_01495	PF12945	Flagellar protein YcgR
AL543_01500	PF14542	GCN5-related N-acetyl-transferase
AL543_01505	PF13443	Cro/C1-type HTH DNA-binding domain
AL543_01510	PF11188	AL543_01510
AL543_01515	PF03572	Peptidase family S41
AL543_01515	PF07676	WD40-like Beta Propeller Repeat
AL543_01515	PF14684	Tricorn protease C1 domain
AL543_01520	PF13533	Biotin-lipoyl like
AL543_01525	PF11742	AL543_01525
AL543_01530	PF00990	GGDEF domain
AL543_01545	PF01048	Phosphorylase superfamily
AL543_01555	PF04463	AL543_01555
AL543_01555	PF08349	AL543_01555
AL543_01560	PF13411	MerR HTH family regulatory protein
AL543_01565	PF00875	DNA photolyase
AL543_01565	PF03441	FAD binding domain of DNA photolyase
AL543_01570	PF01476	LysM domain
AL543_01570	PF03734	L,D-transpeptidase catalytic domain
AL543_01575	PF04728	Lipoprotein leucine-zipper
AL543_01580	PF00270	DEAD/DEAH box helicase
AL543_01580	PF00271	Helicase conserved C-terminal domain
AL543_01585	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_01585	PF00672	HAMP domain
AL543_01590	PF12849	PBP superfamily domain
AL543_01595	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_01600	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_01605	PF00005	ABC transporter
AL543_01610	PF00990	GGDEF domain
AL543_01615	PF00174	Oxidoreductase molybdopterin binding domain
AL543_01620	PF07670	Nucleoside recognition
AL543_01625	PF00916	AL543_01625
AL543_01625	PF01740	STAS domain
AL543_01635	PF01551	Peptidase family M23
AL543_01635	PF04225	Opacity-associated protein A LysM-like domain
AL543_01640	PF00563	EAL domain
AL543_01640	PF00990	GGDEF domain
AL543_01645	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_01645	PF03466	LysR substrate binding domain
AL543_01650	PF07690	Major Facilitator Superfamily
AL543_01655	PF13411	MerR HTH family regulatory protein
AL543_01660	PF13358	DDE superfamily endonuclease
AL543_01660	PF13551	Winged helix-turn helix
AL543_01660	PF13592	AL543_01660
AL543_01675	PF01039	Carboxyl transferase domain
AL543_01690	PF00462	Glutaredoxin
AL543_01695	PF00892	EamA-like transporter family
AL543_01700	PF13609	Gram-negative porin
AL543_01705	PF02566	OsmC-like protein
AL543_01710	PF01047	MarR family
AL543_01715	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AL543_01720	PF05437	AL543_01720
AL543_01725	PF03591	AL543_01725
AL543_01730	PF02311	AraC-like ligand binding domain
AL543_01730	PF12833	Helix-turn-helix domain
AL543_01735	PF01810	AL543_01735
AL543_01745	PF00005	ABC transporter
AL543_01745	PF00664	ABC transporter transmembrane region
AL543_01750	PF02274	Amidinotransferase
AL543_01755	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL543_01760	PF04399	Glutaredoxin 2, C terminal domain
AL543_01760	PF13417	Glutathione S-transferase, N-terminal domain
AL543_01765	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_01765	PF03466	LysR substrate binding domain
AL543_01770	PF10688	AL543_01770
AL543_01775	PF01081	KDPG and KHG aldolase
AL543_01780	PF00294	pfkB family carbohydrate kinase
AL543_01785	PF02614	Glucuronate isomerase
AL543_01790	PF01232	Mannitol dehydrogenase Rossmann domain
AL543_01790	PF08125	Mannitol dehydrogenase C-terminal domain
AL543_01795	PF06808	AL543_01795
AL543_01800	PF04290	AL543_01800
AL543_01805	PF03480	Bacterial extracellular solute-binding protein, family 7
AL543_01810	PF00392	Bacterial regulatory proteins, gntR family
AL543_01810	PF07729	FCD domain
AL543_01815	PF03786	D-mannonate dehydratase (UxuA)
AL543_01820	PF00270	DEAD/DEAH box helicase
AL543_01820	PF00271	Helicase conserved C-terminal domain
AL543_01835	PF12833	Helix-turn-helix domain
AL543_01835	PF12852	Cupin
AL543_01840	PF00462	Glutaredoxin
AL543_01845	PF04224	AL543_01845
AL543_01850	PF11730	AL543_01850
AL543_01855	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_01855	PF12729	AL543_01855
AL543_01860	PF01547	Bacterial extracellular solute-binding protein
AL543_01865	PF01797	Transposase IS200 like
AL543_01870	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_01870	PF00672	HAMP domain
AL543_01870	PF12729	AL543_01870
AL543_01875	PF11212	AL543_01875
AL543_01880	PF01566	AL543_01880
AL543_01885	PF00128	Alpha amylase, catalytic domain
AL543_01885	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL543_01890	PF02264	LamB porin
AL543_01895	PF07148	AL543_01895
AL543_01900	PF08238	Sel1 repeat
AL543_01905	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
AL543_01910	PF11280	AL543_01910
AL543_01915	PF05013	N-formylglutamate amidohydrolase
AL543_01915	PF08014	AL543_01915
AL543_01920	PF04219	AL543_01920
AL543_01925	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_01925	PF03466	LysR substrate binding domain
AL543_01930	PF07681	AL543_01930
AL543_01935	PF02805	Metal binding domain of Ada
AL543_01935	PF06029	AlkA N-terminal domain
AL543_01935	PF12833	Helix-turn-helix domain
AL543_01940	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AL543_01940	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
AL543_01950	PF00939	Sodium:sulfate symporter transmembrane region
AL543_01955	PF14501	GHKL domain
AL543_01955	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
AL543_01955	PF17203	AL543_01955
AL543_01960	PF00072	Response regulator receiver domain
AL543_01965	PF03600	Citrate transporter
AL543_01970	PF07670	Nucleoside recognition
AL543_01975	PF07670	Nucleoside recognition
AL543_01980	PF00375	Sodium:dicarboxylate symporter family
AL543_01985	PF00892	EamA-like transporter family
AL543_01990	PF02698	DUF218 domain
AL543_01995	PF02001	AL543_01995
AL543_02015	PF01483	Proprotein convertase P-domain
AL543_02015	PF13582	Metallo-peptidase family M12B Reprolysin-like
AL543_02025	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
AL543_02030	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL543_02030	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
AL543_02035	PF00581	Rhodanese-like domain
AL543_02040	PF00563	EAL domain
AL543_02045	PF13419	Haloacid dehalogenase-like hydrolase
AL543_02050	PF00916	AL543_02050
AL543_02050	PF01740	STAS domain
AL543_02055	PF01797	Transposase IS200 like
AL543_02060	PF00849	RNA pseudouridylate synthase
AL543_02065	PF05488	PAAR motif
AL543_02075	PF05591	AL543_02075
AL543_02080	PF05943	AL543_02080
AL543_02085	PF04965	Gene 25-like lysozyme
AL543_02090	PF05947	AL543_02090
AL543_02095	PF06996	AL543_02095
AL543_02105	PF12790	Type VI secretion lipoprotein
AL543_02110	PF05936	AL543_02110
AL543_02115	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
AL543_02120	PF00004	ATPase family associated with various cellular activities (AAA)
AL543_02120	PF02861	Clp amino terminal domain
AL543_02120	PF07724	AAA domain (Cdc48 subfamily)
AL543_02120	PF10431	C-terminal, D2-small domain, of ClpB protein
AL543_02125	PF00158	Sigma-54 interaction domain
AL543_02125	PF02954	Bacterial regulatory protein, Fis family
AL543_02130	PF11319	AL543_02130
AL543_02135	PF06812	AL543_02135
AL543_02135	PF16989	AL543_02135
AL543_02140	PF06744	AL543_02140
AL543_02140	PF06761	AL543_02140
AL543_02140	PF14331	AL543_02140
AL543_02145	PF06812	AL543_02145
AL543_02150	PF01471	Putative peptidoglycan binding domain
AL543_02150	PF05954	Phage late control gene D protein (GPD)
AL543_02160	PF13358	DDE superfamily endonuclease
AL543_02160	PF13551	Winged helix-turn helix
AL543_02160	PF13592	AL543_02160
AL543_02170	PF11216	AL543_02170
AL543_02180	PF05025	RbsD / FucU transport protein family
AL543_02185	PF00005	ABC transporter
AL543_02190	PF02653	AL543_02190
AL543_02195	PF13407	Periplasmic binding protein domain
AL543_02200	PF00294	pfkB family carbohydrate kinase
AL543_02205	PF00356	Bacterial regulatory proteins, lacI family
AL543_02205	PF13377	Periplasmic binding protein-like domain
AL543_02210	PF04973	AL543_02210
AL543_02215	PF01048	Phosphorylase superfamily
AL543_02220	PF00027	Cyclic nucleotide-binding domain
AL543_02225	PF03009	Glycerophosphoryl diester phosphodiesterase family
AL543_02230	PF07690	Major Facilitator Superfamily
AL543_02235	PF11777	AL543_02235
AL543_02240	PF02839	Carbohydrate binding domain
AL543_02240	PF03067	Chitin binding domain
AL543_02245	PF00512	His Kinase A (phospho-acceptor) domain
AL543_02245	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_02245	PF13426	PAS domain
AL543_02250	PF00072	Response regulator receiver domain
AL543_02250	PF00158	Sigma-54 interaction domain
AL543_02250	PF02954	Bacterial regulatory protein, Fis family
AL543_02260	PF16868	AL543_02260
AL543_02265	PF06808	AL543_02265
AL543_02270	PF01266	FAD dependent oxidoreductase
AL543_02275	PF10462	Peptidase M66
AL543_02275	PF12561	AL543_02275
AL543_02280	PF01327	Polypeptide deformylase
AL543_02285	PF03611	AL543_02285
AL543_02290	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL543_02295	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL543_02300	PF00356	Bacterial regulatory proteins, lacI family
AL543_02300	PF13377	Periplasmic binding protein-like domain
AL543_02305	PF01794	AL543_02305
AL543_02305	PF08022	AL543_02305
AL543_02315	PF03222	Tryptophan/tyrosine permease family
AL543_02320	PF01212	Beta-eliminating lyase
AL543_02330	PF12843	AL543_02330
AL543_02335	PF03734	L,D-transpeptidase catalytic domain
AL543_02340	PF00990	GGDEF domain
AL543_02345	PF00313	'Cold-shock' DNA-binding domain
AL543_02370	PF04402	Protein of unknown function (DUF541)
AL543_02375	PF13584	AL543_02375
AL543_02380	PF13519	von Willebrand factor type A domain
AL543_02380	PF14559	Tetratricopeptide repeat
AL543_02385	PF00092	von Willebrand factor type A domain
AL543_02390	PF14316	AL543_02390
AL543_02395	PF01882	AL543_02395
AL543_02400	PF07726	ATPase family associated with various cellular activities (AAA)
AL543_02415	PF01323	DSBA-like thioredoxin domain
AL543_02420	PF01773	Na+ dependent nucleoside transporter N-terminus
AL543_02420	PF07662	Na+ dependent nucleoside transporter C-terminus
AL543_02420	PF07670	Nucleoside recognition
AL543_02425	PF01546	Peptidase family M20/M25/M40
AL543_02425	PF07687	Peptidase dimerisation domain
AL543_02430	PF00924	Mechanosensitive ion channel
AL543_02435	PF00158	Sigma-54 interaction domain
AL543_02435	PF01590	GAF domain
AL543_02440	PF00042	Globin
AL543_02440	PF00175	Oxidoreductase NAD-binding domain
AL543_02440	PF00970	Oxidoreductase FAD-binding domain
AL543_02445	PF00313	'Cold-shock' DNA-binding domain
AL543_02450	PF03889	AL543_02450
AL543_02465	PF00072	Response regulator receiver domain
AL543_02470	PF00989	PAS fold
AL543_02475	PF01256	Carbohydrate kinase
AL543_02475	PF03853	YjeF-related protein N-terminus
AL543_02480	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL543_02480	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL543_02485	PF03553	AL543_02485
AL543_02490	PF07885	Ion channel
AL543_02495	PF13505	Outer membrane protein beta-barrel domain
AL543_02505	PF00478	IMP dehydrogenase / GMP reductase domain
AL543_02510	PF00589	Phage integrase family
AL543_02515	PF02384	N-6 DNA Methylase
AL543_02530	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_02530	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_02545	PF07022	Bacteriophage CI repressor helix-turn-helix domain
AL543_02545	PF16452	AL543_02545
AL543_02555	PF06892	AL543_02555
AL543_02580	PF05840	AL543_02580
AL543_02590	PF04606	AL543_02590
AL543_02595	PF13957	AL543_02595
AL543_02600	PF02498	AL543_02600
AL543_02610	PF03237	Terminase-like family
AL543_02610	PF06056	Putative ATPase subunit of terminase (gpP-like)
AL543_02610	PF17289	AL543_02610
AL543_02615	PF05929	AL543_02615
AL543_02620	PF05125	AL543_02620
AL543_02625	PF05944	AL543_02625
AL543_02635	PF05926	AL543_02635
AL543_02640	PF06891	AL543_02640
AL543_02650	PF10758	AL543_02650
AL543_02655	PF10772	AL543_02655
AL543_02660	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AL543_02665	PF16080	AL543_02665
AL543_02670	PF00959	Phage lysozyme
AL543_02685	PF10963	AL543_02685
AL543_02690	PF10145	AL543_02690
AL543_02695	PF10761	AL543_02695
AL543_02700	PF04865	AL543_02700
AL543_02710	PF12571	AL543_02710
AL543_02715	PF10789	AL543_02715
AL543_02740	PF00270	DEAD/DEAH box helicase
AL543_02740	PF00271	Helicase conserved C-terminal domain
AL543_02745	PF03605	AL543_02745
AL543_02750	PF02540	NAD synthase
AL543_02755	PF01467	Cytidylyltransferase
AL543_02760	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_02760	PF08376	Nitrate and nitrite sensing
AL543_02765	PF00072	Response regulator receiver domain
AL543_02765	PF11849	AL543_02765
AL543_02765	PF13487	HD domain
AL543_02770	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_02770	PF17149	AL543_02770
AL543_02780	PF03553	AL543_02780
AL543_02785	PF07690	Major Facilitator Superfamily
AL543_02795	PF00990	GGDEF domain
AL543_02800	PF00657	GDSL-like Lipase/Acylhydrolase
AL543_02805	PF07968	Leukocidin/Hemolysin toxin family
AL543_02805	PF12563	Hemolytic toxin N terminal
AL543_02805	PF16458	AL543_02805
AL543_02810	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_02810	PF12729	AL543_02810
AL543_02815	PF00801	PKD domain
AL543_02815	PF05547	AL543_02815
AL543_02825	PF13230	Glutamine amidotransferases class-II
AL543_02830	PF01497	Periplasmic binding protein
AL543_02835	PF01032	FecCD transport family
AL543_02840	PF01032	FecCD transport family
AL543_02845	PF00005	ABC transporter
AL543_02850	PF12833	Helix-turn-helix domain
AL543_02855	PF00593	TonB dependent receptor
AL543_02855	PF07715	TonB-dependent Receptor Plug Domain
AL543_02860	PF09981	Uncharacterized protein conserved in bacteria (DUF2218)
AL543_02865	PF00871	Acetokinase family
AL543_02875	PF13580	SIS domain
AL543_02880	PF00367	phosphotransferase system, EIIB
AL543_02880	PF02378	Phosphotransferase system, EIIC
AL543_02885	PF01380	SIS domain
AL543_02885	PF01418	Helix-turn-helix domain, rpiR family
AL543_02890	PF02656	AL543_02890
AL543_02895	PF02656	AL543_02895
AL543_02905	PF01261	Xylose isomerase-like TIM barrel
AL543_02910	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL543_02915	PF08282	haloacid dehalogenase-like hydrolase
AL543_02920	PF00596	Class II Aldolase and Adducin N-terminal domain
AL543_02925	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL543_02930	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL543_02930	PF03611	AL543_02930
AL543_02935	PF00455	AL543_02935
AL543_02935	PF08220	DeoR-like helix-turn-helix domain
AL543_02940	PF13483	Beta-lactamase superfamily domain
AL543_02945	PF13358	DDE superfamily endonuclease
AL543_02945	PF13551	Winged helix-turn helix
AL543_02945	PF13592	AL543_02945
AL543_02950	PF01609	Transposase DDE domain
AL543_02955	PF13358	DDE superfamily endonuclease
AL543_02955	PF13384	Homeodomain-like domain
AL543_02955	PF13592	AL543_02955
AL543_02960	PF05025	RbsD / FucU transport protein family
AL543_02965	PF00596	Class II Aldolase and Adducin N-terminal domain
AL543_02980	PF02653	AL543_02980
AL543_02985	PF13407	Periplasmic binding protein domain
AL543_02995	PF00873	AcrB/AcrD/AcrF family
AL543_03000	PF11604	Copper binding periplasmic protein CusF
AL543_03000	PF16576	AL543_03000
AL543_03005	PF02321	Outer membrane efflux protein
AL543_03025	PF03067	Chitin binding domain
AL543_03030	PF04244	Deoxyribodipyrimidine photo-lyase-related protein
AL543_03035	PF01575	MaoC like domain
AL543_03040	PF12849	PBP superfamily domain
AL543_03045	PF11225	AL543_03045
AL543_03050	PF00575	S1 RNA binding domain
AL543_03050	PF00773	RNB domain
AL543_03050	PF08206	Ribonuclease B OB domain
AL543_03055	PF00270	DEAD/DEAH box helicase
AL543_03055	PF00271	Helicase conserved C-terminal domain
AL543_03055	PF03880	DbpA RNA binding domain
AL543_03060	PF00089	Trypsin
AL543_03065	PF00884	Sulfatase
AL543_03070	PF00294	pfkB family carbohydrate kinase
AL543_03075	PF05981	AL543_03075
AL543_03085	PF13419	Haloacid dehalogenase-like hydrolase
AL543_03095	PF03091	CutA1 divalent ion tolerance protein
AL543_03100	PF09997	AL543_03100
AL543_03105	PF00226	DnaJ domain
AL543_03105	PF12339	AL543_03105
AL543_03110	PF09818	Predicted ATPase of the ABC class
AL543_03115	PF00563	EAL domain
AL543_03115	PF00990	GGDEF domain
AL543_03115	PF01590	GAF domain
AL543_03120	PF07055	Enoyl reductase FAD binding domain
AL543_03120	PF12241	Trans-2-enoyl-CoA reductase catalytic region
AL543_03120	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
AL543_03125	PF13472	GDSL-like Lipase/Acylhydrolase family
AL543_03130	PF00005	ABC transporter
AL543_03135	PF02687	AL543_03135
AL543_03140	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
AL543_03140	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
AL543_03145	PF01266	FAD dependent oxidoreductase
AL543_03150	PF02626	Allophanate hydrolase subunit 2
AL543_03155	PF02682	Allophanate hydrolase subunit 1
AL543_03160	PF03746	LamB/YcsF family
AL543_03165	PF16363	AL543_03165
AL543_03175	PF03222	Tryptophan/tyrosine permease family
AL543_03185	PF04336	AL543_03185
AL543_03190	PF00270	DEAD/DEAH box helicase
AL543_03190	PF00271	Helicase conserved C-terminal domain
AL543_03195	PF00440	Bacterial regulatory proteins, tetR family
AL543_03200	PF00034	Cytochrome c
AL543_03205	PF01212	Beta-eliminating lyase
AL543_03210	PF00293	NUDIX domain
AL543_03215	PF07728	AAA domain (dynein-related subfamily)
AL543_03215	PF12592	Protein of unknown function (DUF3763)
AL543_03220	PF05762	VWA domain containing CoxE-like protein
AL543_03230	PF00005	ABC transporter
AL543_03235	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL543_03240	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_03245	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_03250	PF02634	FdhD/NarQ family
AL543_03255	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_03255	PF03466	LysR substrate binding domain
AL543_03260	PF13358	DDE superfamily endonuclease
AL543_03260	PF13551	Winged helix-turn helix
AL543_03260	PF13592	AL543_03260
AL543_03275	PF00384	Molybdopterin oxidoreductase
AL543_03275	PF01568	Molydopterin dinucleotide binding domain
AL543_03290	PF01764	Lipase (class 3)
AL543_03295	PF11756	AL543_03295
AL543_03300	PF07690	Major Facilitator Superfamily
AL543_03305	PF00085	Thioredoxin
AL543_03310	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AL543_03310	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL543_03315	PF00990	GGDEF domain
AL543_03320	PF13641	Glycosyltransferase like family 2
AL543_03325	PF13437	HlyD family secretion protein
AL543_03330	PF02754	AL543_03330
AL543_03330	PF13183	4Fe-4S dicluster domain
AL543_03335	PF00890	FAD binding domain
AL543_03340	PF01266	FAD dependent oxidoreductase
AL543_03340	PF04324	BFD-like [2Fe-2S] binding domain
AL543_03350	PF00230	Major intrinsic protein
AL543_03355	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AL543_03355	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AL543_03360	PF10688	AL543_03360
AL543_03365	PF04363	AL543_03365
AL543_03375	PF04337	Protein of unknown function, DUF480
AL543_03380	PF13358	DDE superfamily endonuclease
AL543_03380	PF13384	Homeodomain-like domain
AL543_03380	PF13592	AL543_03380
AL543_03385	PF01541	GIY-YIG catalytic domain
AL543_03390	PF13729	AL543_03390
AL543_03395	PF13407	Periplasmic binding protein domain
AL543_03400	PF00072	Response regulator receiver domain
AL543_03400	PF00512	His Kinase A (phospho-acceptor) domain
AL543_03400	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_03400	PF09308	LuxQ, periplasmic
AL543_03405	PF07238	PilZ domain
AL543_03405	PF12945	Flagellar protein YcgR
AL543_03415	PF04076	Bacterial OB fold (BOF) protein
AL543_03420	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AL543_03420	PF07685	CobB/CobQ-like glutamine amidotransferase domain
AL543_03425	PF13531	Bacterial extracellular solute-binding protein
AL543_03430	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_03435	PF00005	ABC transporter
AL543_03435	PF03459	TOBE domain
AL543_03440	PF00368	Hydroxymethylglutaryl-coenzyme A reductase
AL543_03455	PF12805	AL543_03455
AL543_03455	PF13515	AL543_03455
AL543_03460	PF00580	UvrD/REP helicase N-terminal domain
AL543_03460	PF12462	AL543_03460
AL543_03460	PF13361	UvrD-like helicase C-terminal domain
AL543_03465	PF01447	Thermolysin metallopeptidase, catalytic domain
AL543_03465	PF02868	Thermolysin metallopeptidase, alpha-helical domain
AL543_03470	PF01292	Prokaryotic cytochrome b561
AL543_03475	PF13670	AL543_03475
AL543_03480	PF01609	Transposase DDE domain
AL543_03485	PF01219	Prokaryotic diacylglycerol kinase
AL543_03490	PF13358	DDE superfamily endonuclease
AL543_03490	PF13384	Homeodomain-like domain
AL543_03490	PF13592	AL543_03490
AL543_03495	PF01569	PAP2 superfamily
AL543_03500	PF00857	Isochorismatase family
AL543_03505	PF02142	MGS-like domain
AL543_03510	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL543_03515	PF00072	Response regulator receiver domain
AL543_03515	PF00512	His Kinase A (phospho-acceptor) domain
AL543_03515	PF01627	Hpt domain
AL543_03515	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_03520	PF00224	Pyruvate kinase, barrel domain
AL543_03520	PF02887	Pyruvate kinase, alpha/beta domain
AL543_03525	PF07690	Major Facilitator Superfamily
AL543_03535	PF13343	Bacterial extracellular solute-binding protein
AL543_03540	PF00512	His Kinase A (phospho-acceptor) domain
AL543_03540	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_03545	PF00072	Response regulator receiver domain
AL543_03545	PF02954	Bacterial regulatory protein, Fis family
AL543_03545	PF14532	Sigma-54 interaction domain
AL543_03550	PF07947	AL543_03550
AL543_03560	PF00704	Glycosyl hydrolases family 18
AL543_03560	PF06483	AL543_03560
AL543_03565	PF00483	Nucleotidyl transferase
AL543_03570	PF00990	GGDEF domain
AL543_03570	PF13426	PAS domain
AL543_03585	PF02355	Protein export membrane protein
AL543_03585	PF07549	SecD/SecF GG Motif
AL543_03585	PF13721	SecD export protein N-terminal TM region
AL543_03590	PF02355	Protein export membrane protein
AL543_03590	PF07549	SecD/SecF GG Motif
AL543_03595	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL543_03600	PF02378	Phosphotransferase system, EIIC
AL543_03605	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
AL543_03615	PF00728	Glycosyl hydrolase family 20, catalytic domain
AL543_03615	PF02838	Glycosyl hydrolase family 20, domain 2
AL543_03615	PF03173	Putative carbohydrate binding domain
AL543_03615	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
AL543_03620	PF13561	Enoyl-(Acyl carrier protein) reductase
AL543_03625	PF00108	Thiolase, N-terminal domain
AL543_03625	PF02803	Thiolase, C-terminal domain
AL543_03630	PF09361	AL543_03630
AL543_03635	PF07167	AL543_03635
AL543_03640	PF05547	AL543_03640
AL543_03645	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_03650	PF01478	Type IV leader peptidase family
AL543_03655	PF04964	AL543_03655
AL543_03665	PF00263	AL543_03665
AL543_03665	PF13629	AL543_03665
AL543_03675	PF13614	AAA domain
AL543_03680	PF00437	Type II/IV secretion system protein
AL543_03685	PF00482	Type II secretion system (T2SS), protein F
AL543_03690	PF00482	Type II secretion system (T2SS), protein F
AL543_03695	PF13432	Tetratricopeptide repeat
AL543_03700	PF07811	AL543_03700
AL543_03705	PF16964	AL543_03705
AL543_03715	PF00691	OmpA family
AL543_03720	PF00005	ABC transporter
AL543_03720	PF08402	TOBE domain
AL543_03725	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_03730	PF13343	Bacterial extracellular solute-binding protein
AL543_03735	PF07690	Major Facilitator Superfamily
AL543_03740	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_03740	PF05231	AL543_03740
AL543_03740	PF07730	Histidine kinase
AL543_03745	PF00072	Response regulator receiver domain
AL543_03745	PF00196	Bacterial regulatory proteins, luxR family
AL543_03750	PF01966	HD domain
AL543_03755	PF09574	AL543_03755
AL543_03760	PF03264	NapC/NirT cytochrome c family, N-terminal region
AL543_03765	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
AL543_03770	PF00384	Molybdopterin oxidoreductase
AL543_03770	PF01568	Molydopterin dinucleotide binding domain
AL543_03770	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL543_03775	PF03927	NapD protein
AL543_03780	PF12838	4Fe-4S dicluster domain
AL543_03785	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_03785	PF07730	Histidine kinase
AL543_03785	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
AL543_03790	PF00072	Response regulator receiver domain
AL543_03790	PF00196	Bacterial regulatory proteins, luxR family
AL543_03795	PF03313	AL543_03795
AL543_03795	PF03315	Serine dehydratase beta chain
AL543_03800	PF03606	AL543_03800
AL543_03805	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_03810	PF13419	Haloacid dehalogenase-like hydrolase
AL543_03815	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL543_03815	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AL543_03820	PF00691	OmpA family
AL543_03825	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_03825	PF08447	PAS fold
AL543_03830	PF01266	FAD dependent oxidoreductase
AL543_03830	PF16901	AL543_03830
AL543_03835	PF11269	Protein of unknown function (DUF3069)
AL543_03840	PF09335	AL543_03840
AL543_03855	PF05742	AL543_03855
AL543_03860	PF04945	YHS domain
AL543_03870	PF01553	Acyltransferase
AL543_03870	PF13444	Acetyltransferase (GNAT) domain
AL543_03880	PF11168	AL543_03880
AL543_03880	PF13515	AL543_03880
AL543_03885	PF13437	HlyD family secretion protein
AL543_03885	PF13533	Biotin-lipoyl like
AL543_03890	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_03890	PF03466	LysR substrate binding domain
AL543_03895	PF00581	Rhodanese-like domain
AL543_03895	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL543_03895	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL543_03900	PF11127	Protein of unknown function (DUF2892)
AL543_03905	PF12840	Helix-turn-helix domain
AL543_03910	PF04143	AL543_03910
AL543_03920	PF16576	AL543_03920
AL543_03925	PF00873	AcrB/AcrD/AcrF family
AL543_03930	PF01797	Transposase IS200 like
AL543_03935	PF00881	Nitroreductase family
AL543_03940	PF03992	Antibiotic biosynthesis monooxygenase
AL543_03945	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_03945	PF03466	LysR substrate binding domain
AL543_03950	PF12847	Methyltransferase domain
AL543_03955	PF06942	AL543_03955
AL543_03960	PF00293	NUDIX domain
AL543_03965	PF00857	Isochorismatase family
AL543_03970	PF13302	Acetyltransferase (GNAT) domain
AL543_03975	PF14234	AL543_03975
AL543_03980	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL543_03980	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL543_03990	PF05145	AL543_03990
AL543_03995	PF13304	AAA domain
AL543_04000	PF14491	AL543_04000
AL543_04005	PF00588	SpoU rRNA Methylase family
AL543_04010	PF00456	Transketolase, thiamine diphosphate binding domain
AL543_04010	PF02779	Transketolase, pyrimidine binding domain
AL543_04010	PF02780	Transketolase, C-terminal domain
AL543_04015	PF00923	Transaldolase
AL543_04025	PF04198	Putative sugar-binding domain
AL543_04030	PF00704	Glycosyl hydrolases family 18
AL543_04035	PF00581	Rhodanese-like domain
AL543_04045	PF00899	ThiF family
AL543_04050	PF00994	Probable molybdopterin binding domain
AL543_04050	PF03453	MoeA N-terminal region (domain I and II)
AL543_04050	PF03454	MoeA C-terminal region (domain IV)
AL543_04055	PF01227	GTP cyclohydrolase I
AL543_04060	PF01625	Peptide methionine sulfoxide reductase
AL543_04060	PF01641	SelR domain
AL543_04065	PF01268	Formate--tetrahydrofolate ligase
AL543_04070	PF01741	Large-conductance mechanosensitive channel, MscL
AL543_04075	PF00465	Iron-containing alcohol dehydrogenase
AL543_04095	PF13419	Haloacid dehalogenase-like hydrolase
AL543_04100	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL543_04100	PF14760	Rnk N-terminus
AL543_04105	PF13419	Haloacid dehalogenase-like hydrolase
AL543_04110	PF00202	Aminotransferase class-III
AL543_04115	PF00266	Aminotransferase class-V
AL543_04120	PF13343	Bacterial extracellular solute-binding protein
AL543_04125	PF00005	ABC transporter
AL543_04130	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_04135	PF00392	Bacterial regulatory proteins, gntR family
AL543_04135	PF07702	UTRA domain
AL543_04140	PF00892	EamA-like transporter family
AL543_04145	PF07690	Major Facilitator Superfamily
AL543_04150	PF02698	DUF218 domain
AL543_04155	PF03891	AL543_04155
AL543_04165	PF00293	NUDIX domain
AL543_04170	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL543_04175	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_04180	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_04180	PF12911	AL543_04180
AL543_04185	PF00005	ABC transporter
AL543_04185	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL543_04190	PF05193	Peptidase M16 inactive domain
AL543_04195	PF03479	Domain of unknown function (DUF296)
AL543_04200	PF00440	Bacterial regulatory proteins, tetR family
AL543_04205	PF13410	Glutathione S-transferase, C-terminal domain
AL543_04205	PF13417	Glutathione S-transferase, N-terminal domain
AL543_04210	PF00043	Glutathione S-transferase, C-terminal domain
AL543_04210	PF02798	Glutathione S-transferase, N-terminal domain
AL543_04215	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL543_04220	PF13275	S4 domain
AL543_04225	PF01435	Peptidase family M48
AL543_04230	PF03061	Thioesterase superfamily
AL543_04235	PF11869	AL543_04235
AL543_04240	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL543_04240	PF12793	AL543_04240
AL543_04250	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_04250	PF03466	LysR substrate binding domain
AL543_04255	PF00583	Acetyltransferase (GNAT) family
AL543_04255	PF13380	CoA binding domain
AL543_04255	PF13549	ATP-grasp domain
AL543_04255	PF13607	Succinyl-CoA ligase like flavodoxin domain
AL543_04260	PF05036	Sporulation related domain
AL543_04265	PF01820	D-ala D-ala ligase N-terminus
AL543_04265	PF07478	D-ala D-ala ligase C-terminus
AL543_04270	PF11782	AL543_04270
AL543_04275	PF01253	Translation initiation factor SUI1
AL543_04280	PF01648	4'-phosphopantetheinyl transferase superfamily
AL543_04285	PF00005	ABC transporter
AL543_04285	PF00664	ABC transporter transmembrane region
AL543_04290	PF00005	ABC transporter
AL543_04290	PF00664	ABC transporter transmembrane region
AL543_04295	PF00501	AMP-binding enzyme
AL543_04295	PF13193	AMP-binding enzyme C-terminal domain
AL543_04300	PF00425	chorismate binding enzyme
AL543_04305	PF00975	Thioesterase domain
AL543_04310	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL543_04315	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL543_04315	PF00501	AMP-binding enzyme
AL543_04315	PF00550	Phosphopantetheine attachment site
AL543_04315	PF00668	Condensation domain
AL543_04315	PF00698	Acyl transferase domain
AL543_04315	PF00975	Thioesterase domain
AL543_04315	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL543_04315	PF08242	Methyltransferase domain
AL543_04315	PF08659	KR domain
AL543_04315	PF13193	AMP-binding enzyme C-terminal domain
AL543_04315	PF16197	AL543_04315
AL543_04320	PF00501	AMP-binding enzyme
AL543_04320	PF00550	Phosphopantetheine attachment site
AL543_04320	PF00668	Condensation domain
AL543_04320	PF13847	Methyltransferase domain
AL543_04330	PF00593	TonB dependent receptor
AL543_04330	PF07715	TonB-dependent Receptor Plug Domain
AL543_04335	PF12833	Helix-turn-helix domain
AL543_04340	PF12833	Helix-turn-helix domain
AL543_04355	PF02303	Helix-destabilising protein
AL543_04360	PF05144	AL543_04360
AL543_04360	PF05155	AL543_04360
AL543_04365	PF01381	Helix-turn-helix
AL543_04380	PF02303	Helix-destabilising protein
AL543_04385	PF05144	AL543_04385
AL543_04385	PF05155	AL543_04385
AL543_04390	PF01381	Helix-turn-helix
AL543_04395	PF03701	AL543_04395
AL543_04400	PF13729	AL543_04400
AL543_04405	PF11060	AL543_04405
AL543_04410	PF00072	Response regulator receiver domain
AL543_04410	PF00486	Transcriptional regulatory protein, C terminal
AL543_04415	PF00512	His Kinase A (phospho-acceptor) domain
AL543_04415	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_04415	PF11884	Domain of unknown function (DUF3404)
AL543_04420	PF02233	NAD(P) transhydrogenase beta subunit
AL543_04425	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
AL543_04425	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
AL543_04425	PF12769	Domain of unknown function (DUF3814)
AL543_04430	PF10115	AL543_04430
AL543_04435	PF10719	AL543_04435
AL543_04440	PF00990	GGDEF domain
AL543_04445	PF11557	AL543_04445
AL543_04450	PF01019	Gamma-glutamyltranspeptidase
AL543_04460	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL543_04460	PF00990	GGDEF domain
AL543_04465	PF11810	AL543_04465
AL543_04470	PF07690	Major Facilitator Superfamily
AL543_04475	PF06934	AL543_04475
AL543_04490	PF02163	Peptidase family M50
AL543_04495	PF03831	PhnA protein
AL543_04495	PF08274	PhnA Zinc-Ribbon
AL543_04505	PF03741	AL543_04505
AL543_04510	PF00149	Calcineurin-like phosphoesterase
AL543_04510	PF02872	5'-nucleotidase, C-terminal domain
AL543_04515	PF11398	Protein of unknown function (DUF2813)
AL543_04520	PF06496	AL543_04520
AL543_04525	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_04525	PF03466	LysR substrate binding domain
AL543_04530	PF00571	CBS domain
AL543_04530	PF01226	Formate/nitrite transporter
AL543_04535	PF04264	YceI-like domain
AL543_04540	PF01292	Prokaryotic cytochrome b561
AL543_04550	PF00563	EAL domain
AL543_04555	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_04555	PF00672	HAMP domain
AL543_04560	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_04560	PF00672	HAMP domain
AL543_04570	PF09335	AL543_04570
AL543_04575	PF07646	Kelch motif
AL543_04580	PF01344	Kelch motif
AL543_04585	PF01380	SIS domain
AL543_04585	PF01418	Helix-turn-helix domain, rpiR family
AL543_04590	PF00701	Dihydrodipicolinate synthetase family
AL543_04595	PF06808	AL543_04595
AL543_04600	PF04290	AL543_04600
AL543_04605	PF03480	Bacterial extracellular solute-binding protein, family 7
AL543_04615	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
AL543_04620	PF00480	ROK family
AL543_04625	PF01979	Amidohydrolase family
AL543_04630	PF13358	DDE superfamily endonuclease
AL543_04630	PF13551	Winged helix-turn helix
AL543_04630	PF13592	AL543_04630
AL543_04640	PF13358	DDE superfamily endonuclease
AL543_04640	PF13384	Homeodomain-like domain
AL543_04640	PF13592	AL543_04640
AL543_04650	PF01926	50S ribosome-binding GTPase
AL543_04655	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL543_04660	PF00654	Voltage gated chloride channel
AL543_04665	PF03595	Voltage-dependent anion channel
AL543_04670	PF01609	Transposase DDE domain
AL543_04675	PF00155	Aminotransferase class I and II
AL543_04680	PF00072	Response regulator receiver domain
AL543_04680	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_04685	PF13476	AAA domain
AL543_04685	PF13558	Putative exonuclease SbcCD, C subunit
AL543_04690	PF00149	Calcineurin-like phosphoesterase
AL543_04690	PF12320	Type 5 capsule protein repressor C-terminal domain
AL543_04695	PF00356	Bacterial regulatory proteins, lacI family
AL543_04695	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL543_04700	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL543_04700	PF00381	PTS HPr component phosphorylation site
AL543_04705	PF00294	pfkB family carbohydrate kinase
AL543_04710	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL543_04710	PF02378	Phosphotransferase system, EIIC
AL543_04715	PF00563	EAL domain
AL543_04720	PF05618	Putative ATP-dependant zinc protease
AL543_04725	PF00155	Aminotransferase class I and II
AL543_04730	PF13353	4Fe-4S single cluster domain
AL543_04735	PF03477	ATP cone domain
AL543_04735	PF13597	Anaerobic ribonucleoside-triphosphate reductase
AL543_04740	PF02627	Carboxymuconolactone decarboxylase family
AL543_04745	PF12833	Helix-turn-helix domain
AL543_04745	PF12852	Cupin
AL543_04750	PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
AL543_04755	PF13358	DDE superfamily endonuclease
AL543_04755	PF13384	Homeodomain-like domain
AL543_04755	PF13592	AL543_04755
AL543_04765	PF02661	Fic/DOC family
AL543_04770	PF04875	AL543_04770
AL543_04780	PF04365	Protein of unknown function (DUF497)
AL543_04795	PF08843	Nucleotidyl transferase of unknown function (DUF1814)
AL543_04800	PF14106	AL543_04800
AL543_04810	PF00583	Acetyltransferase (GNAT) family
AL543_04815	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL543_04820	PF01699	Sodium/calcium exchanger protein
AL543_04825	PF04229	GrpB protein
AL543_04835	PF00076	RNA recognition motif
AL543_04840	PF04875	AL543_04840
AL543_04845	PF13302	Acetyltransferase (GNAT) domain
AL543_04870	PF13358	DDE superfamily endonuclease
AL543_04870	PF13551	Winged helix-turn helix
AL543_04870	PF13592	AL543_04870
AL543_04880	PF12681	Glyoxalase-like domain
AL543_04885	PF04221	RelB antitoxin
AL543_04890	PF05016	Plasmid stabilisation system protein
AL543_04905	PF01609	Transposase DDE domain
AL543_04910	PF00574	Clp protease
AL543_04915	PF01609	Transposase DDE domain
AL543_04925	PF02567	Phenazine biosynthesis-like protein
AL543_04930	PF04237	YjbR
AL543_04940	PF09016	Pas factor saposin fold
AL543_04955	PF00076	RNA recognition motif
AL543_04960	PF03358	NADPH-dependent FMN reductase
AL543_04965	PF13302	Acetyltransferase (GNAT) domain
AL543_04970	PF01609	Transposase DDE domain
AL543_04985	PF07653	Variant SH3 domain
AL543_04990	PF01609	Transposase DDE domain
AL543_05000	PF12493	AL543_05000
AL543_05020	PF01609	Transposase DDE domain
AL543_05025	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AL543_05030	PF05016	Plasmid stabilisation system protein
AL543_05035	PF12680	SnoaL-like domain
AL543_05040	PF07929	Plasmid pRiA4b ORF-3-like protein
AL543_05045	PF11948	AL543_05045
AL543_05085	PF13673	Acetyltransferase (GNAT) domain
AL543_05090	PF13673	Acetyltransferase (GNAT) domain
AL543_05095	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AL543_05100	PF05016	Plasmid stabilisation system protein
AL543_05110	PF12493	AL543_05110
AL543_05120	PF01906	Putative heavy-metal-binding
AL543_05130	PF04299	Putative FMN-binding domain
AL543_05140	PF01906	Putative heavy-metal-binding
AL543_05150	PF01391	Collagen triple helix repeat (20 copies)
AL543_05155	PF13358	DDE superfamily endonuclease
AL543_05155	PF13551	Winged helix-turn helix
AL543_05155	PF13592	AL543_05155
AL543_05160	PF04875	AL543_05160
AL543_05170	PF04875	AL543_05170
AL543_05185	PF04875	AL543_05185
AL543_05195	PF13673	Acetyltransferase (GNAT) domain
AL543_05200	PF09905	Uncharacterized conserved protein (DUF2132)
AL543_05205	PF01906	Putative heavy-metal-binding
AL543_05210	PF11948	AL543_05210
AL543_05215	PF01555	DNA methylase
AL543_05220	PF04229	GrpB protein
AL543_05235	PF13669	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL543_05255	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL543_05265	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL543_05270	PF12464	Maltose acetyltransferase
AL543_05270	PF14602	Hexapeptide repeat of succinyl-transferase
AL543_05275	PF10899	AL543_05275
AL543_05280	PF01381	Helix-turn-helix
AL543_05285	PF05015	Plasmid maintenance system killer protein
AL543_05290	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL543_05295	PF03693	Uncharacterised protein family (UPF0156)
AL543_05300	PF05016	Plasmid stabilisation system protein
AL543_05315	PF12493	AL543_05315
AL543_05335	PF02498	AL543_05335
AL543_05345	PF01202	Shikimate kinase
AL543_05355	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL543_05360	PF00583	Acetyltransferase (GNAT) family
AL543_05365	PF02048	Heat-stable enterotoxin ST
AL543_05370	PF00583	Acetyltransferase (GNAT) family
AL543_05375	PF11225	AL543_05375
AL543_05380	PF13302	Acetyltransferase (GNAT) domain
AL543_05395	PF04266	ASCH domain
AL543_05400	PF07362	Post-segregation antitoxin CcdA
AL543_05405	PF01845	CcdB protein
AL543_05415	PF11185	AL543_05415
AL543_05425	PF13175	AAA ATPase domain
AL543_05430	PF00665	Integrase core domain
AL543_05430	PF13936	Helix-turn-helix domain
AL543_05450	PF03693	Uncharacterised protein family (UPF0156)
AL543_05455	PF05016	Plasmid stabilisation system protein
AL543_05460	PF05016	Plasmid stabilisation system protein
AL543_05465	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AL543_05470	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL543_05480	PF11225	AL543_05480
AL543_05485	PF11665	AL543_05485
AL543_05490	PF06769	Plasmid encoded toxin Txe
AL543_05495	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AL543_05500	PF05016	Plasmid stabilisation system protein
AL543_05505	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AL543_05510	PF07362	Post-segregation antitoxin CcdA
AL543_05515	PF01845	CcdB protein
AL543_05520	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL543_05525	PF04266	ASCH domain
AL543_05535	PF04875	AL543_05535
AL543_05545	PF02810	SEC-C motif
AL543_05550	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL543_05560	PF12681	Glyoxalase-like domain
AL543_05565	PF04229	GrpB protein
AL543_05570	PF04875	AL543_05570
AL543_05575	PF13302	Acetyltransferase (GNAT) domain
AL543_05585	PF03235	AL543_05585
AL543_05585	PF07510	AL543_05585
AL543_05605	PF13302	Acetyltransferase (GNAT) domain
AL543_05620	PF02810	SEC-C motif
AL543_05625	PF00589	Phage integrase family
AL543_05625	PF13495	Phage integrase, N-terminal SAM-like domain
AL543_05630	PF01797	Transposase IS200 like
AL543_05635	PF00453	Ribosomal protein L20
AL543_05640	PF01632	Ribosomal protein L35
AL543_05645	PF00707	Translation initiation factor IF-3, C-terminal domain
AL543_05645	PF05198	Translation initiation factor IF-3, N-terminal domain
AL543_05650	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL543_05650	PF02824	TGS domain
AL543_05650	PF03129	Anticodon binding domain
AL543_05650	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL543_05655	PF01571	Aminomethyltransferase folate-binding domain
AL543_05655	PF08669	Glycine cleavage T-protein C-terminal barrel domain
AL543_05660	PF01381	Helix-turn-helix
AL543_05660	PF07883	Cupin domain
AL543_05665	PF00464	Serine hydroxymethyltransferase
AL543_05670	PF01597	Glycine cleavage H-protein
AL543_05675	PF02347	Glycine cleavage system P-protein
AL543_05680	PF13472	GDSL-like Lipase/Acylhydrolase family
AL543_05685	PF00194	Eukaryotic-type carbonic anhydrase
AL543_05700	PF00768	D-alanyl-D-alanine carboxypeptidase
AL543_05700	PF07943	Penicillin-binding protein 5, C-terminal domain
AL543_05705	PF01614	Bacterial transcriptional regulator
AL543_05705	PF09339	IclR helix-turn-helix domain
AL543_05710	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_05715	PF00005	ABC transporter
AL543_05715	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL543_05720	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_05720	PF12911	AL543_05720
AL543_05725	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_05730	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL543_05735	PF10022	AL543_05735
AL543_05740	PF04055	Radical SAM superfamily
AL543_05740	PF13186	Iron-sulfur cluster-binding domain
AL543_05745	PF00884	Sulfatase
AL543_05750	PF00884	Sulfatase
AL543_05750	PF16385	AL543_05750
AL543_05755	PF00990	GGDEF domain
AL543_05760	PF02278	Polysaccharide lyase family 8, super-sandwich domain
AL543_05760	PF02884	Polysaccharide lyase family 8, C-terminal beta-sandwich domain
AL543_05760	PF08124	Polysaccharide lyase family 8, N terminal alpha-helical domain
AL543_05765	PF09508	Lacto-N-biose phosphorylase
AL543_05765	PF17385	AL543_05765
AL543_05765	PF17386	AL543_05765
AL543_05770	PF07470	Glycosyl Hydrolase Family 88
AL543_05775	PF13561	Enoyl-(Acyl carrier protein) reductase
AL543_05780	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
AL543_05780	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
AL543_05785	PF01081	KDPG and KHG aldolase
AL543_05790	PF00294	pfkB family carbohydrate kinase
AL543_05795	PF04962	KduI/IolB family
AL543_05800	PF03573	outer membrane porin, OprD family
AL543_05805	PF00491	Arginase family
AL543_05810	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AL543_05815	PF12625	AL543_05815
AL543_05815	PF12833	Helix-turn-helix domain
AL543_05825	PF13533	Biotin-lipoyl like
AL543_05830	PF00924	Mechanosensitive ion channel
AL543_05835	PF01769	Divalent cation transporter
AL543_05835	PF03448	MgtE intracellular N domain
AL543_05840	PF00696	Amino acid kinase family
AL543_05845	PF06339	AL543_05845
AL543_05850	PF00202	Aminotransferase class-III
AL543_05855	PF00583	Acetyltransferase (GNAT) family
AL543_05860	PF06445	GyrI-like small molecule binding domain
AL543_05860	PF12833	Helix-turn-helix domain
AL543_05865	PF02311	AraC-like ligand binding domain
AL543_05865	PF12833	Helix-turn-helix domain
AL543_05870	PF01554	MatE
AL543_05875	PF13505	Outer membrane protein beta-barrel domain
AL543_05880	PF01329	Pterin 4 alpha carbinolamine dehydratase
AL543_05885	PF00351	Biopterin-dependent aromatic amino acid hydroxylase
AL543_05890	PF00501	AMP-binding enzyme
AL543_05890	PF13193	AMP-binding enzyme C-terminal domain
AL543_05895	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_05895	PF03466	LysR substrate binding domain
AL543_05905	PF13489	Methyltransferase domain
AL543_05915	PF00132	Bacterial transferase hexapeptide (six repeats)
AL543_05915	PF12464	Maltose acetyltransferase
AL543_05915	PF14602	Hexapeptide repeat of succinyl-transferase
AL543_05920	PF01595	AL543_05920
AL543_05920	PF03471	Transporter associated domain
AL543_05925	PF02566	OsmC-like protein
AL543_05930	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL543_05935	PF00563	EAL domain
AL543_05935	PF00990	GGDEF domain
AL543_05940	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL543_05940	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL543_05950	PF01810	AL543_05950
AL543_05955	PF13520	Amino acid permease
AL543_05960	PF00990	GGDEF domain
AL543_05970	PF00072	Response regulator receiver domain
AL543_05970	PF04397	LytTr DNA-binding domain
AL543_05975	PF06580	AL543_05975
AL543_05985	PF17131	AL543_05985
AL543_05990	PF02687	AL543_05990
AL543_05990	PF12704	MacB-like periplasmic core domain
AL543_05995	PF00005	ABC transporter
AL543_06005	PF00248	Aldo/keto reductase family
AL543_06010	PF00128	Alpha amylase, catalytic domain
AL543_06015	PF13358	DDE superfamily endonuclease
AL543_06015	PF13384	Homeodomain-like domain
AL543_06015	PF13592	AL543_06015
AL543_06030	PF01609	Transposase DDE domain
AL543_06040	PF01447	Thermolysin metallopeptidase, catalytic domain
AL543_06040	PF02868	Thermolysin metallopeptidase, alpha-helical domain
AL543_06040	PF03413	Peptidase propeptide and YPEB domain
AL543_06040	PF04151	Bacterial pre-peptidase C-terminal domain
AL543_06040	PF07504	Fungalysin/Thermolysin Propeptide Motif
AL543_06050	PF03922	OmpW family
AL543_06060	PF00768	D-alanyl-D-alanine carboxypeptidase
AL543_06065	PF01336	OB-fold nucleic acid binding domain
AL543_06065	PF07733	Bacterial DNA polymerase III alpha subunit
AL543_06065	PF14579	Helix-hairpin-helix motif
AL543_06070	PF01351	Ribonuclease HII
AL543_06075	PF02684	AL543_06075
AL543_06080	PF00132	Bacterial transferase hexapeptide (six repeats)
AL543_06080	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
AL543_06085	PF07977	FabA-like domain
AL543_06090	PF00132	Bacterial transferase hexapeptide (six repeats)
AL543_06090	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
AL543_06095	PF03938	Outer membrane protein (OmpH-like)
AL543_06100	PF01103	Surface antigen
AL543_06100	PF07244	Surface antigen variable number repeat
AL543_06105	PF00595	PDZ domain (Also known as DHR or GLGF)
AL543_06105	PF02163	Peptidase family M50
AL543_06110	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
AL543_06110	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
AL543_06110	PF13288	DXP reductoisomerase C-terminal domain
AL543_06115	PF01148	Cytidylyltransferase family
AL543_06120	PF01255	Putative undecaprenyl diphosphate synthase
AL543_06125	PF01765	Ribosome recycling factor
AL543_06130	PF00696	Amino acid kinase family
AL543_06135	PF00889	Elongation factor TS
AL543_06140	PF00318	Ribosomal protein S2
AL543_06145	PF00557	Metallopeptidase family M24
AL543_06150	PF01909	Nucleotidyltransferase domain
AL543_06150	PF01966	HD domain
AL543_06150	PF08335	GlnD PII-uridylyltransferase
AL543_06155	PF11944	AL543_06155
AL543_06160	PF04608	Phosphatidylglycerophosphatase A
AL543_06165	PF00586	AIR synthase related protein, N-terminal domain
AL543_06165	PF02769	AIR synthase related protein, C-terminal domain
AL543_06170	PF01029	NusB family
AL543_06175	PF00885	6,7-dimethyl-8-ribityllumazine synthase
AL543_06180	PF00925	GTP cyclohydrolase II
AL543_06180	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AL543_06185	PF00677	Lumazine binding domain
AL543_06190	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL543_06190	PF01872	RibD C-terminal domain
AL543_06195	PF03477	ATP cone domain
AL543_06200	PF00171	Aldehyde dehydrogenase family
AL543_06205	PF00696	Amino acid kinase family
AL543_06205	PF01472	PUA domain
AL543_06210	PF07417	Transcriptional regulator Crl
AL543_06215	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
AL543_06220	PF00156	Phosphoribosyl transferase domain
AL543_06225	PF00860	Permease family
AL543_06230	PF01546	Peptidase family M20/M25/M40
AL543_06230	PF07687	Peptidase dimerisation domain
AL543_06235	PF05618	Putative ATP-dependant zinc protease
AL543_06240	PF08443	RimK-like ATP-grasp domain
AL543_06245	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL543_06250	PF00209	Sodium:neurotransmitter symporter family
AL543_06255	PF00990	GGDEF domain
AL543_06255	PF05228	AL543_06255
AL543_06260	PF11101	AL543_06260
AL543_06265	PF00817	impB/mucB/samB family
AL543_06265	PF11798	IMS family HHH motif
AL543_06265	PF11799	impB/mucB/samB family C-terminal domain
AL543_06270	PF04400	AL543_06270
AL543_06275	PF02424	ApbE family
AL543_06285	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL543_06285	PF00175	Oxidoreductase NAD-binding domain
AL543_06285	PF00970	Oxidoreductase FAD-binding domain
AL543_06290	PF02508	AL543_06290
AL543_06295	PF02508	AL543_06295
AL543_06300	PF04205	FMN-binding domain
AL543_06305	PF03116	AL543_06305
AL543_06310	PF05896	AL543_06310
AL543_06310	PF11973	AL543_06310
AL543_06315	PF01722	BolA-like protein
AL543_06320	PF05175	Methyltransferase small domain
AL543_06325	PF03923	AL543_06325
AL543_06330	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AL543_06335	PF07690	Major Facilitator Superfamily
AL543_06340	PF12973	ChrR Cupin-like domain
AL543_06340	PF13490	Putative zinc-finger
AL543_06345	PF04542	Sigma-70 region 2
AL543_06345	PF04545	Sigma-70, region 4
AL543_06350	PF02190	ATP-dependent protease La (LON) domain
AL543_06355	PF03502	Nucleoside-specific channel-forming protein, Tsx
AL543_06360	PF02558	Ketopantoate reductase PanE/ApbA
AL543_06360	PF08546	Ketopantoate reductase PanE/ApbA C terminal
AL543_06365	PF01965	DJ-1/PfpI family
AL543_06370	PF00266	Aminotransferase class-V
AL543_06375	PF02657	Fe-S metabolism associated domain
AL543_06380	PF00899	ThiF family
AL543_06385	PF03562	MltA specific insert domain
AL543_06385	PF06725	3D domain
AL543_06390	PF11012	AL543_06390
AL543_06395	PF00583	Acetyltransferase (GNAT) family
AL543_06395	PF00696	Amino acid kinase family
AL543_06410	PF13538	UvrD-like helicase C-terminal domain
AL543_06410	PF13604	AAA domain
AL543_06415	PF00580	UvrD/REP helicase N-terminal domain
AL543_06415	PF12705	PD-(D/E)XK nuclease superfamily
AL543_06415	PF13361	UvrD-like helicase C-terminal domain
AL543_06420	PF04257	Exodeoxyribonuclease V, gamma subunit
AL543_06425	PF03595	Voltage-dependent anion channel
AL543_06430	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_06430	PF03466	LysR substrate binding domain
AL543_06435	PF07130	YebG protein
AL543_06440	PF14602	Hexapeptide repeat of succinyl-transferase
AL543_06440	PF14789	Tetrahydrodipicolinate N-succinyltransferase middle
AL543_06440	PF14790	Tetrahydrodipicolinate N-succinyltransferase N-terminal
AL543_06445	PF01797	Transposase IS200 like
AL543_06450	PF05940	AL543_06450
AL543_06455	PF00583	Acetyltransferase (GNAT) family
AL543_06455	PF11814	AL543_06455
AL543_06460	PF08443	RimK-like ATP-grasp domain
AL543_06460	PF14401	AL543_06460
AL543_06465	PF01544	CorA-like Mg2+ transporter protein
AL543_06470	PF06094	AIG2-like family
AL543_06475	PF01588	Putative tRNA binding domain
AL543_06480	PF00356	Bacterial regulatory proteins, lacI family
AL543_06480	PF13377	Periplasmic binding protein-like domain
AL543_06485	PF01609	Transposase DDE domain
AL543_06485	PF13006	AL543_06485
AL543_06490	PF00703	Glycosyl hydrolases family 2
AL543_06490	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
AL543_06490	PF02837	Glycosyl hydrolases family 2, sugar binding domain
AL543_06490	PF02929	Beta galactosidase small chain
AL543_06490	PF16353	AL543_06490
AL543_06495	PF02417	AL543_06495
AL543_06500	PF13487	HD domain
AL543_06505	PF00501	AMP-binding enzyme
AL543_06515	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_06515	PF03466	LysR substrate binding domain
AL543_06520	PF00009	Elongation factor Tu GTP binding domain
AL543_06520	PF00679	Elongation factor G C-terminus
AL543_06520	PF03144	Elongation factor Tu domain 2
AL543_06520	PF03764	Elongation factor G, domain IV
AL543_06520	PF14492	Elongation Factor G, domain II
AL543_06525	PF13481	AAA domain
AL543_06525	PF13541	Subunit ChlI of Mg-chelatase
AL543_06530	PF07238	PilZ domain
AL543_06545	PF00702	haloacid dehalogenase-like hydrolase
AL543_06550	PF10144	AL543_06550
AL543_06555	PF01048	Phosphorylase superfamily
AL543_06560	PF01676	Metalloenzyme superfamily
AL543_06565	PF00591	Glycosyl transferase family, a/b domain
AL543_06565	PF02885	Glycosyl transferase family, helical bundle domain
AL543_06565	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
AL543_06570	PF01791	DeoC/LacD family aldolase
AL543_06580	PF01773	Na+ dependent nucleoside transporter N-terminus
AL543_06580	PF07662	Na+ dependent nucleoside transporter C-terminus
AL543_06580	PF07670	Nucleoside recognition
AL543_06585	PF01026	TatD related DNase
AL543_06590	PF03883	AL543_06590
AL543_06595	PF01235	AL543_06595
AL543_06600	PF12065	AL543_06600
AL543_06605	PF01814	Hemerythrin HHE cation binding domain
AL543_06610	PF03167	Uracil DNA glycosylase superfamily
AL543_06615	PF01261	Xylose isomerase-like TIM barrel
AL543_06620	PF01228	Glycine radical
AL543_06625	PF00291	Pyridoxal-phosphate dependent enzyme
AL543_06625	PF14821	Threonine synthase N terminus
AL543_06630	PF00288	GHMP kinases N terminal domain
AL543_06630	PF08544	GHMP kinases C terminal
AL543_06635	PF00696	Amino acid kinase family
AL543_06635	PF00742	Homoserine dehydrogenase
AL543_06635	PF01842	ACT domain
AL543_06635	PF03447	Homoserine dehydrogenase, NAD binding domain
AL543_06635	PF13840	ACT domain
AL543_06645	PF03737	Demethylmenaquinone methyltransferase
AL543_06650	PF11697	AL543_06650
AL543_06655	PF00072	Response regulator receiver domain
AL543_06655	PF00486	Transcriptional regulatory protein, C terminal
AL543_06660	PF00072	Response regulator receiver domain
AL543_06660	PF00512	His Kinase A (phospho-acceptor) domain
AL543_06660	PF00989	PAS fold
AL543_06660	PF01627	Hpt domain
AL543_06660	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_06665	PF00990	GGDEF domain
AL543_06665	PF08448	PAS fold
AL543_06665	PF13188	PAS domain
AL543_06670	PF04055	Radical SAM superfamily
AL543_06670	PF16199	AL543_06670
AL543_06675	PF00310	Glutamine amidotransferases class-II
AL543_06675	PF01493	GXGXG motif
AL543_06675	PF01645	Conserved region in glutamate synthase
AL543_06675	PF04898	Glutamate synthase central domain
AL543_06680	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL543_06680	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AL543_06685	PF00310	Glutamine amidotransferases class-II
AL543_06685	PF01493	GXGXG motif
AL543_06685	PF01645	Conserved region in glutamate synthase
AL543_06685	PF04898	Glutamate synthase central domain
AL543_06690	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL543_06690	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AL543_06695	PF07386	AL543_06695
AL543_06700	PF01048	Phosphorylase superfamily
AL543_06705	PF03186	AL543_06705
AL543_06710	PF01497	Periplasmic binding protein
AL543_06715	PF03458	AL543_06715
AL543_06720	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_06720	PF03466	LysR substrate binding domain
AL543_06725	PF01925	AL543_06725
AL543_06730	PF02142	MGS-like domain
AL543_06730	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL543_06730	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AL543_06735	PF00117	Glutamine amidotransferase class-I
AL543_06735	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
AL543_06740	PF01113	Dihydrodipicolinate reductase, N-terminus
AL543_06740	PF05173	Dihydrodipicolinate reductase, C-terminus
AL543_06750	PF00293	NUDIX domain
AL543_06755	PF01043	SecA preprotein cross-linking domain
AL543_06755	PF02810	SEC-C motif
AL543_06755	PF07516	SecA Wing and Scaffold domain
AL543_06755	PF07517	SecA DEAD-like domain
AL543_06770	PF05258	AL543_06770
AL543_06775	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
AL543_06780	PF00091	Tubulin/FtsZ family, GTPase domain
AL543_06780	PF12327	FtsZ family, C-terminal domain
AL543_06785	PF02491	SHS2 domain inserted in FTSA
AL543_06785	PF14450	Cell division protein FtsA
AL543_06790	PF03799	Cell division protein FtsQ
AL543_06790	PF08478	POTRA domain, FtsQ-type
AL543_06795	PF01225	Mur ligase family, catalytic domain
AL543_06795	PF02875	Mur ligase family, glutamate ligase domain
AL543_06795	PF08245	Mur ligase middle domain
AL543_06800	PF03033	Glycosyltransferase family 28 N-terminal domain
AL543_06800	PF04101	Glycosyltransferase family 28 C-terminal domain
AL543_06805	PF01098	AL543_06805
AL543_06810	PF02875	Mur ligase family, glutamate ligase domain
AL543_06810	PF08245	Mur ligase middle domain
AL543_06815	PF00953	Glycosyl transferase family 4
AL543_06815	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
AL543_06820	PF01225	Mur ligase family, catalytic domain
AL543_06820	PF02875	Mur ligase family, glutamate ligase domain
AL543_06820	PF08245	Mur ligase middle domain
AL543_06825	PF01225	Mur ligase family, catalytic domain
AL543_06825	PF02875	Mur ligase family, glutamate ligase domain
AL543_06825	PF08245	Mur ligase middle domain
AL543_06830	PF00905	Penicillin binding protein transpeptidase domain
AL543_06830	PF03717	Penicillin-binding Protein dimerisation domain
AL543_06835	PF04999	AL543_06835
AL543_06840	PF01795	MraW methylase family
AL543_06850	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL543_06850	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL543_06855	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL543_06855	PF00364	Biotin-requiring enzyme
AL543_06855	PF02817	e3 binding domain
AL543_06860	PF00456	Transketolase, thiamine diphosphate binding domain
AL543_06865	PF00392	Bacterial regulatory proteins, gntR family
AL543_06865	PF07729	FCD domain
AL543_06870	PF00149	Calcineurin-like phosphoesterase
AL543_06870	PF02872	5'-nucleotidase, C-terminal domain
AL543_06875	PF01368	DHH family
AL543_06875	PF02833	DHHA2 domain
AL543_06880	PF01368	DHH family
AL543_06880	PF02272	DHHA1 domain
AL543_06885	PF10411	Disulfide bond isomerase protein N-terminus
AL543_06885	PF13098	Thioredoxin-like domain
AL543_06890	PF00589	Phage integrase family
AL543_06890	PF02899	Phage integrase, N-terminal SAM-like domain
AL543_06895	PF00258	Flavodoxin
AL543_06900	PF01510	N-acetylmuramoyl-L-alanine amidase
AL543_06905	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
AL543_06905	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
AL543_06910	PF07963	Prokaryotic N-terminal methylation motif
AL543_06915	PF00437	Type II/IV secretion system protein
AL543_06915	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
AL543_06920	PF00482	Type II secretion system (T2SS), protein F
AL543_06925	PF01478	Type IV leader peptidase family
AL543_06925	PF06750	AL543_06925
AL543_06930	PF01121	Dephospho-CoA kinase
AL543_06935	PF07072	Protein of unknown function (DUF1342)
AL543_06940	PF03884	Domain of unknown function (DUF329)
AL543_06945	PF00521	DNA gyrase/topoisomerase IV, subunit A
AL543_06945	PF03989	DNA gyrase C-terminal domain, beta-propeller
AL543_06950	PF00204	DNA gyrase B
AL543_06950	PF00986	DNA gyrase B subunit, carboxyl terminus
AL543_06950	PF01751	Toprim domain
AL543_06950	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_06955	PF05728	Uncharacterised protein family (UPF0227)
AL543_06960	PF00149	Calcineurin-like phosphoesterase
AL543_06965	PF06853	AL543_06965
AL543_06970	PF00293	NUDIX domain
AL543_06975	PF02321	Outer membrane efflux protein
AL543_06980	PF00294	pfkB family carbohydrate kinase
AL543_06980	PF01467	Cytidylyltransferase
AL543_06985	PF03710	Glutamate-ammonia ligase adenylyltransferase
AL543_06985	PF08335	GlnD PII-uridylyltransferase
AL543_06990	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_06995	PF00520	Ion transport protein
AL543_07000	PF01928	CYTH domain
AL543_07000	PF05235	CHAD domain
AL543_07005	PF01865	Protein of unknown function DUF47
AL543_07010	PF01384	AL543_07010
AL543_07015	PF08239	Bacterial SH3 domain
AL543_07020	PF16537	AL543_07020
AL543_07025	PF01471	Putative peptidoglycan binding domain
AL543_07025	PF13401	AAA domain
AL543_07030	PF01743	Poly A polymerase head domain
AL543_07030	PF01966	HD domain
AL543_07030	PF12627	Probable RNA and SrmB- binding site of polymerase A
AL543_07035	PF01212	Beta-eliminating lyase
AL543_07040	PF03222	Tryptophan/tyrosine permease family
AL543_07045	PF08543	Phosphomethylpyrimidine kinase
AL543_07050	PF00113	Enolase, C-terminal TIM barrel domain
AL543_07050	PF03952	Enolase, N-terminal domain
AL543_07055	PF00117	Glutamine amidotransferase class-I
AL543_07055	PF06418	CTP synthase N-terminus
AL543_07065	PF03819	MazG nucleotide pyrophosphohydrolase domain
AL543_07070	PF02824	TGS domain
AL543_07070	PF04607	Region found in RelA / SpoT proteins
AL543_07070	PF13291	ACT domain
AL543_07070	PF13328	HD domain
AL543_07075	PF01938	TRAM domain
AL543_07075	PF05958	tRNA (Uracil-5-)-methyltransferase
AL543_07080	PF00072	Response regulator receiver domain
AL543_07080	PF00512	His Kinase A (phospho-acceptor) domain
AL543_07080	PF01627	Hpt domain
AL543_07080	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_07080	PF09984	AL543_07080
AL543_07085	PF00990	GGDEF domain
AL543_07100	PF01648	4'-phosphopantetheinyl transferase superfamily
AL543_07105	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
AL543_07110	PF02565	Recombination protein O C terminal
AL543_07110	PF11967	Recombination protein O N terminal
AL543_07115	PF01926	50S ribosome-binding GTPase
AL543_07115	PF07650	KH domain
AL543_07120	PF00035	Double-stranded RNA binding motif
AL543_07120	PF14622	Ribonuclease-III-like
AL543_07125	PF00717	Peptidase S24-like
AL543_07125	PF10502	Signal peptidase, peptidase S26
AL543_07130	PF00009	Elongation factor Tu GTP binding domain
AL543_07130	PF00679	Elongation factor G C-terminus
AL543_07130	PF03144	Elongation factor Tu domain 2
AL543_07130	PF06421	GTP-binding protein LepA C-terminus
AL543_07135	PF04246	AL543_07135
AL543_07140	PF03888	MucB/RseB family
AL543_07140	PF17188	AL543_07140
AL543_07145	PF03872	Anti sigma-E protein RseA, N-terminal domain
AL543_07145	PF03873	Anti sigma-E protein RseA, C-terminal domain
AL543_07150	PF04542	Sigma-70 region 2
AL543_07150	PF08281	Sigma-70, region 4
AL543_07160	PF00890	FAD binding domain
AL543_07160	PF02910	Fumarate reductase flavoprotein C-term
AL543_07170	PF03937	Flavinator of succinate dehydrogenase
AL543_07175	PF01571	Aminomethyltransferase folate-binding domain
AL543_07180	PF06526	Protein of unknown function (DUF1107)
AL543_07185	PF01494	FAD binding domain
AL543_07190	PF01494	FAD binding domain
AL543_07195	PF03695	Uncharacterised protein family (UPF0149)
AL543_07200	PF05164	Cell division protein ZapA
AL543_07210	PF01812	5-formyltetrahydrofolate cyclo-ligase family
AL543_07215	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
AL543_07220	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL543_07220	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL543_07225	PF10369	Small subunit of acetolactate synthase
AL543_07225	PF13710	ACT domain
AL543_07230	PF00205	Thiamine pyrophosphate enzyme, central domain
AL543_07230	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL543_07230	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL543_07235	PF00501	AMP-binding enzyme
AL543_07240	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_07240	PF03466	LysR substrate binding domain
AL543_07245	PF13528	Glycosyl transferase family 1
AL543_07250	PF01569	PAP2 superfamily
AL543_07255	PF00440	Bacterial regulatory proteins, tetR family
AL543_07255	PF14514	Transcriptional regulator, TetR, C-terminal
AL543_07260	PF00682	HMGL-like
AL543_07260	PF08502	LeuA allosteric (dimerisation) domain
AL543_07265	PF00180	Isocitrate/isopropylmalate dehydrogenase
AL543_07270	PF00330	Aconitase family (aconitate hydratase)
AL543_07275	PF00694	Aconitase C-terminal domain
AL543_07280	PF04784	AL543_07280
AL543_07335	PF01966	HD domain
AL543_07335	PF11871	AL543_07335
AL543_07345	PF06271	AL543_07345
AL543_07350	PF03739	AL543_07350
AL543_07355	PF03739	AL543_07355
AL543_07360	PF00883	Cytosol aminopeptidase family, catalytic domain
AL543_07360	PF02789	Cytosol aminopeptidase family, N-terminal domain
AL543_07365	PF04364	DNA polymerase III chi subunit, HolC
AL543_07370	PF00133	tRNA synthetases class I (I, L, M and V)
AL543_07370	PF08264	Anticodon-binding domain of tRNA
AL543_07370	PF10458	Valyl tRNA synthetase tRNA binding arm
AL543_07385	PF01435	Peptidase family M48
AL543_07390	PF05987	AL543_07390
AL543_07395	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL543_07395	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL543_07400	PF00849	RNA pseudouridylate synthase
AL543_07405	PF00176	SNF2 family N-terminal domain
AL543_07405	PF00271	Helicase conserved C-terminal domain
AL543_07405	PF12137	RNA polymerase recycling family C-terminal
AL543_07415	PF02562	PhoH-like protein
AL543_07415	PF13638	PIN domain
AL543_07420	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AL543_07420	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AL543_07425	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AL543_07425	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AL543_07430	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
AL543_07430	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
AL543_07435	PF01042	Endoribonuclease L-PSP
AL543_07440	PF01553	Acyltransferase
AL543_07445	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AL543_07450	PF01722	BolA-like protein
AL543_07455	PF13466	STAS domain
AL543_07460	PF05494	Toluene tolerance, Ttg2
AL543_07465	PF02470	AL543_07465
AL543_07470	PF02405	AL543_07470
AL543_07475	PF00005	ABC transporter
AL543_07485	PF01699	Sodium/calcium exchanger protein
AL543_07490	PF00571	CBS domain
AL543_07490	PF01380	SIS domain
AL543_07495	PF08282	haloacid dehalogenase-like hydrolase
AL543_07500	PF06835	Lipopolysaccharide-assembly, LptC-related
AL543_07505	PF03968	OstA-like protein
AL543_07510	PF00005	ABC transporter
AL543_07510	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AL543_07515	PF00309	AL543_07515
AL543_07515	PF04552	Sigma-54, DNA binding domain
AL543_07515	PF04963	Sigma-54 factor, core binding domain
AL543_07520	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
AL543_07525	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL543_07530	PF03668	AL543_07530
AL543_07535	PF00381	PTS HPr component phosphorylation site
AL543_07540	PF00571	CBS domain
AL543_07540	PF01769	Divalent cation transporter
AL543_07540	PF03448	MgtE intracellular N domain
AL543_07545	PF01523	Putative modulator of DNA gyrase
AL543_07550	PF04751	Protein of unknown function (DUF615)
AL543_07555	PF00005	ABC transporter
AL543_07560	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_07565	PF13343	Bacterial extracellular solute-binding protein
AL543_07570	PF02441	Flavoprotein
AL543_07575	PF01225	Mur ligase family, catalytic domain
AL543_07575	PF02875	Mur ligase family, glutamate ligase domain
AL543_07575	PF08245	Mur ligase middle domain
AL543_07585	PF00316	Fructose-1-6-bisphosphatase
AL543_07590	PF00719	Inorganic pyrophosphatase
AL543_07595	PF10973	AL543_07595
AL543_07600	PF06094	AIG2-like family
AL543_07605	PF04357	AL543_07605
AL543_07610	PF01103	Surface antigen
AL543_07610	PF17243	AL543_07610
AL543_07615	PF01625	Peptide methionine sulfoxide reductase
AL543_07620	PF09695	AL543_07620
AL543_07625	PF10795	AL543_07625
AL543_07630	PF10986	AL543_07630
AL543_07635	PF00005	ABC transporter
AL543_07640	PF02687	AL543_07640
AL543_07640	PF12704	MacB-like periplasmic core domain
AL543_07645	PF11736	Protein of unknown function (DUF3299)
AL543_07650	PF10987	AL543_07650
AL543_07655	PF01583	Adenylylsulphate kinase
AL543_07660	PF00009	Elongation factor Tu GTP binding domain
AL543_07665	PF01507	Phosphoadenosine phosphosulfate reductase family
AL543_07670	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL543_07675	PF00149	Calcineurin-like phosphoesterase
AL543_07675	PF02872	5'-nucleotidase, C-terminal domain
AL543_07685	PF00270	DEAD/DEAH box helicase
AL543_07685	PF00271	Helicase conserved C-terminal domain
AL543_07685	PF03880	DbpA RNA binding domain
AL543_07690	PF13673	Acetyltransferase (GNAT) domain
AL543_07695	PF00892	EamA-like transporter family
AL543_07700	PF04225	Opacity-associated protein A LysM-like domain
AL543_07700	PF08525	AL543_07700
AL543_07705	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL543_07705	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AL543_07710	PF11075	AL543_07710
AL543_07715	PF01196	Ribosomal protein L17
AL543_07720	PF01000	RNA polymerase Rpb3/RpoA insert domain
AL543_07720	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
AL543_07720	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
AL543_07725	PF00163	Ribosomal protein S4/S9 N-terminal domain
AL543_07725	PF01479	S4 domain
AL543_07730	PF00411	Ribosomal protein S11
AL543_07735	PF00416	Ribosomal protein S13/S18
AL543_07740	PF00444	Ribosomal protein L36
AL543_07745	PF00344	SecY translocase
AL543_07750	PF00828	Ribosomal protein L18e/L15
AL543_07755	PF00327	Ribosomal protein L30p/L7e
AL543_07760	PF00333	Ribosomal protein S5, N-terminal domain
AL543_07760	PF03719	Ribosomal protein S5, C-terminal domain
AL543_07765	PF00861	Ribosomal L18p/L5e family
AL543_07770	PF00347	Ribosomal protein L6
AL543_07775	PF00410	Ribosomal protein S8
AL543_07780	PF00253	Ribosomal protein S14p/S29e
AL543_07785	PF00281	Ribosomal protein L5
AL543_07785	PF00673	ribosomal L5P family C-terminus
AL543_07790	PF00467	KOW motif
AL543_07790	PF17136	AL543_07790
AL543_07795	PF00238	Ribosomal protein L14p/L23e
AL543_07800	PF00366	Ribosomal protein S17
AL543_07805	PF00831	Ribosomal L29 protein
AL543_07810	PF00252	Ribosomal protein L16p/L10e
AL543_07815	PF00189	Ribosomal protein S3, C-terminal domain
AL543_07815	PF07650	KH domain
AL543_07820	PF00237	Ribosomal protein L22p/L17e
AL543_07825	PF00203	Ribosomal protein S19
AL543_07830	PF00181	Ribosomal Proteins L2, RNA binding domain
AL543_07830	PF03947	Ribosomal Proteins L2, C-terminal domain
AL543_07835	PF00276	Ribosomal protein L23
AL543_07840	PF00573	Ribosomal protein L4/L1 family
AL543_07845	PF00297	Ribosomal protein L3
AL543_07850	PF00338	Ribosomal protein S10p/S20e
AL543_07855	PF00588	SpoU rRNA Methylase family
AL543_07855	PF08032	RNA 2'-O ribose methyltransferase substrate binding
AL543_07860	PF00575	S1 RNA binding domain
AL543_07860	PF00773	RNB domain
AL543_07860	PF08206	Ribonuclease B OB domain
AL543_07860	PF08461	Ribonuclease R winged-helix domain
AL543_07865	PF00884	Sulfatase
AL543_07865	PF11893	AL543_07865
AL543_07870	PF08238	Sel1 repeat
AL543_07875	PF00709	Adenylosuccinate synthetase
AL543_07880	PF01112	Asparaginase
AL543_07885	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL543_07890	PF09526	AL543_07890
AL543_07895	PF00999	Sodium/hydrogen exchanger family
AL543_07895	PF02254	TrkA-N domain
AL543_07900	PF02525	Flavodoxin-like fold
AL543_07905	PF00005	ABC transporter
AL543_07905	PF09496	Cenp-O kinetochore centromere component
AL543_07905	PF12848	ABC transporter
AL543_07910	PF09523	AL543_07910
AL543_07915	PF00561	alpha/beta hydrolase fold
AL543_07920	PF06794	Uncharacterised protein family (UPF0270)
AL543_07925	PF00485	Phosphoribulokinase / Uridine kinase family
AL543_07930	PF00027	Cyclic nucleotide-binding domain
AL543_07930	PF00325	Bacterial regulatory proteins, crp family
AL543_07935	PF07063	Domain of unknown function (DUF1338)
AL543_07940	PF00171	Aldehyde dehydrogenase family
AL543_07945	PF04958	Arginine N-succinyltransferase beta subunit
AL543_07950	PF00202	Aminotransferase class-III
AL543_07955	PF00117	Glutamine amidotransferase class-I
AL543_07960	PF00919	Uncharacterized protein family UPF0004
AL543_07960	PF04055	Radical SAM superfamily
AL543_07965	PF00932	Lamin Tail Domain
AL543_07970	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL543_07975	PF00579	tRNA synthetases class I (W and Y)
AL543_07980	PF13419	Haloacid dehalogenase-like hydrolase
AL543_07985	PF00834	Ribulose-phosphate 3 epimerase family
AL543_07990	PF02086	D12 class N6 adenine-specific DNA methyltransferase
AL543_07995	PF05036	Sporulation related domain
AL543_07995	PF13401	AAA domain
AL543_08000	PF01761	3-dehydroquinate synthase
AL543_08005	PF01202	Shikimate kinase
AL543_08010	PF00263	AL543_08010
AL543_08010	PF03958	Bacterial type II/III secretion system short domain
AL543_08010	PF07660	Secretin and TonB N terminus short domain
AL543_08015	PF04351	Pilus assembly protein, PilP
AL543_08020	PF04350	Pilus assembly protein, PilO
AL543_08025	PF05137	AL543_08025
AL543_08030	PF11104	Type IV pilus assembly protein PilM;
AL543_08035	PF00905	Penicillin binding protein transpeptidase domain
AL543_08035	PF00912	Transglycosylase
AL543_08035	PF17092	AL543_08035
AL543_08040	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_08040	PF03466	LysR substrate binding domain
AL543_08045	PF00462	Glutaredoxin
AL543_08045	PF08534	Redoxin
AL543_08050	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL543_08050	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL543_08055	PF12292	AL543_08055
AL543_08060	PF00206	Lyase
AL543_08060	PF14698	Argininosuccinate lyase C-terminal
AL543_08065	PF00764	Arginosuccinate synthase
AL543_08070	PF00696	Amino acid kinase family
AL543_08075	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AL543_08075	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AL543_08080	PF01546	Peptidase family M20/M25/M40
AL543_08080	PF07687	Peptidase dimerisation domain
AL543_08085	PF00311	Phosphoenolpyruvate carboxylase
AL543_08090	PF03551	Transcriptional regulator PadR-like family
AL543_08090	PF10400	Virulence activator alpha C-term
AL543_08095	PF00132	Bacterial transferase hexapeptide (six repeats)
AL543_08095	PF06426	Serine acetyltransferase, N-terminal
AL543_08100	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
AL543_08100	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
AL543_08105	PF02556	Preprotein translocase subunit SecB
AL543_08110	PF00581	Rhodanese-like domain
AL543_08115	PF00152	tRNA synthetases class II (D, K and N)
AL543_08120	PF00890	FAD binding domain
AL543_08120	PF02910	Fumarate reductase flavoprotein C-term
AL543_08125	PF13085	2Fe-2S iron-sulfur cluster binding domain
AL543_08125	PF13183	4Fe-4S dicluster domain
AL543_08130	PF02300	Fumarate reductase subunit C
AL543_08135	PF02313	Fumarate reductase subunit D
AL543_08140	PF01132	Elongation factor P (EF-P) OB domain
AL543_08140	PF08207	Elongation factor P (EF-P) KOW-like domain
AL543_08140	PF09285	Elongation factor P, C-terminal
AL543_08145	PF04055	Radical SAM superfamily
AL543_08145	PF13353	4Fe-4S single cluster domain
AL543_08165	PF00118	TCP-1/cpn60 chaperonin family
AL543_08170	PF00166	Chaperonin 10 Kd subunit
AL543_08175	PF13412	Winged helix-turn-helix DNA-binding
AL543_08180	PF11333	AL543_08180
AL543_08185	PF05656	AL543_08185
AL543_08190	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
AL543_08195	PF00121	Triosephosphate isomerase
AL543_08200	PF01554	MatE
AL543_08205	PF03737	Demethylmenaquinone methyltransferase
AL543_08210	PF01040	UbiA prenyltransferase family
AL543_08215	PF00004	ATPase family associated with various cellular activities (AAA)
AL543_08215	PF07724	AAA domain (Cdc48 subfamily)
AL543_08215	PF10431	C-terminal, D2-small domain, of ClpB protein
AL543_08220	PF00227	Proteasome subunit
AL543_08225	PF05036	Sporulation related domain
AL543_08230	PF00356	Bacterial regulatory proteins, lacI family
AL543_08230	PF13377	Periplasmic binding protein-like domain
AL543_08235	PF00270	DEAD/DEAH box helicase
AL543_08235	PF00271	Helicase conserved C-terminal domain
AL543_08240	PF01197	Ribosomal protein L31
AL543_08245	PF00390	Malic enzyme, N-terminal domain
AL543_08245	PF03949	Malic enzyme, NAD binding domain
AL543_08250	PF01340	Met Apo-repressor, MetJ
AL543_08255	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL543_08260	PF00696	Amino acid kinase family
AL543_08260	PF00742	Homoserine dehydrogenase
AL543_08260	PF03447	Homoserine dehydrogenase, NAD binding domain
AL543_08265	PF02219	Methylenetetrahydrofolate reductase
AL543_08270	PF06005	Protein of unknown function (DUF904)
AL543_08275	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
AL543_08280	PF00365	Phosphofructokinase
AL543_08285	PF01545	Cation efflux family
AL543_08285	PF16916	AL543_08285
AL543_08290	PF07813	LTXXQ motif family protein
AL543_08295	PF00072	Response regulator receiver domain
AL543_08295	PF00486	Transcriptional regulatory protein, C terminal
AL543_08300	PF00512	His Kinase A (phospho-acceptor) domain
AL543_08300	PF00672	HAMP domain
AL543_08300	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_08300	PF16527	AL543_08300
AL543_08305	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
AL543_08305	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
AL543_08310	PF00588	SpoU rRNA Methylase family
AL543_08315	PF04186	AL543_08315
AL543_08320	PF00206	Lyase
AL543_08320	PF10415	Fumarase C C-terminus
AL543_08325	PF03605	AL543_08325
AL543_08330	PF02683	AL543_08330
AL543_08330	PF11412	Disulphide bond corrector protein DsbC
AL543_08330	PF13899	Thioredoxin-like
AL543_08335	PF00072	Response regulator receiver domain
AL543_08335	PF00196	Bacterial regulatory proteins, luxR family
AL543_08340	PF00999	Sodium/hydrogen exchanger family
AL543_08340	PF02080	TrkA-C domain
AL543_08340	PF03471	Transporter associated domain
AL543_08345	PF13937	AL543_08345
AL543_08350	PF00474	Sodium:solute symporter family
AL543_08355	PF02592	AL543_08355
AL543_08360	PF00625	Guanylate kinase
AL543_08365	PF01192	RNA polymerase Rpb6
AL543_08370	PF02824	TGS domain
AL543_08370	PF04607	Region found in RelA / SpoT proteins
AL543_08370	PF13291	ACT domain
AL543_08370	PF13328	HD domain
AL543_08375	PF00270	DEAD/DEAH box helicase
AL543_08375	PF00271	Helicase conserved C-terminal domain
AL543_08375	PF17191	AL543_08375
AL543_08380	PF00860	Permease family
AL543_08385	PF00512	His Kinase A (phospho-acceptor) domain
AL543_08385	PF00672	HAMP domain
AL543_08385	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_08390	PF00072	Response regulator receiver domain
AL543_08390	PF00486	Transcriptional regulatory protein, C terminal
AL543_08395	PF00933	Glycosyl hydrolase family 3 N terminal domain
AL543_08400	PF02653	AL543_08400
AL543_08405	PF00005	ABC transporter
AL543_08410	PF13407	Periplasmic binding protein domain
AL543_08415	PF00196	Bacterial regulatory proteins, luxR family
AL543_08420	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL543_08420	PF03449	Transcription elongation factor, N-terminal
AL543_08425	PF00575	S1 RNA binding domain
AL543_08425	PF09371	Tex-like protein N-terminal domain
AL543_08425	PF12836	Helix-hairpin-helix motif
AL543_08425	PF16921	AL543_08425
AL543_08435	PF00561	alpha/beta hydrolase fold
AL543_08440	PF00156	Phosphoribosyl transferase domain
AL543_08445	PF01106	NifU-like domain
AL543_08445	PF01521	Iron-sulphur cluster biosynthesis
AL543_08450	PF00293	NUDIX domain
AL543_08455	PF00459	Inositol monophosphatase family
AL543_08460	PF01203	AL543_08460
AL543_08465	PF04612	Type II secretion system (T2SS), protein M
AL543_08470	PF05134	Type II secretion system (T2SS), protein L
AL543_08470	PF12693	GspL periplasmic domain
AL543_08475	PF03934	Type II secretion system (T2SS), protein K
AL543_08480	PF07963	Prokaryotic N-terminal methylation motif
AL543_08480	PF11612	Type II secretion system (T2SS), protein J
AL543_08485	PF02501	Type II secretion system (T2SS), protein I
AL543_08485	PF07963	Prokaryotic N-terminal methylation motif
AL543_08490	PF12019	Type II transport protein GspH
AL543_08495	PF07963	Prokaryotic N-terminal methylation motif
AL543_08495	PF08334	Type II secretion system (T2SS), protein G
AL543_08500	PF00482	Type II secretion system (T2SS), protein F
AL543_08505	PF00437	Type II/IV secretion system protein
AL543_08510	PF00263	AL543_08510
AL543_08510	PF03958	Bacterial type II/III secretion system short domain
AL543_08515	PF11356	Type IV pilus biogenesis
AL543_08520	PF01479	S4 domain
AL543_08525	PF01430	Hsp33 protein
AL543_08530	PF01293	Phosphoenolpyruvate carboxykinase
AL543_08535	PF05170	AL543_08535
AL543_08540	PF09500	Putative thioesterase (yiiD_Cterm)
AL543_08540	PF13673	Acetyltransferase (GNAT) domain
AL543_08545	PF02580	D-Tyr-tRNA(Tyr) deacylase
AL543_08550	PF03631	AL543_08550
AL543_08555	PF13521	AAA domain
AL543_08560	PF00009	Elongation factor Tu GTP binding domain
AL543_08560	PF00679	Elongation factor G C-terminus
AL543_08560	PF03144	Elongation factor Tu domain 2
AL543_08570	PF00120	Glutamine synthetase, catalytic domain
AL543_08570	PF03951	Glutamine synthetase, beta-Grasp domain
AL543_08575	PF13511	AL543_08575
AL543_08580	PF00512	His Kinase A (phospho-acceptor) domain
AL543_08580	PF00989	PAS fold
AL543_08580	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_08585	PF00072	Response regulator receiver domain
AL543_08585	PF00158	Sigma-54 interaction domain
AL543_08585	PF02954	Bacterial regulatory protein, Fis family
AL543_08590	PF00563	EAL domain
AL543_08590	PF00990	GGDEF domain
AL543_08590	PF02743	Cache domain
AL543_08595	PF00962	Adenosine/AMP deaminase
AL543_08605	PF13358	DDE superfamily endonuclease
AL543_08605	PF13384	Homeodomain-like domain
AL543_08605	PF13592	AL543_08605
AL543_08610	PF13592	AL543_08610
AL543_08615	PF13358	DDE superfamily endonuclease
AL543_08675	PF00076	RNA recognition motif
AL543_08680	PF01177	Asp/Glu/Hydantoin racemase
AL543_08685	PF00082	Subtilase family
AL543_08685	PF04151	Bacterial pre-peptidase C-terminal domain
AL543_08685	PF05922	Peptidase inhibitor I9
AL543_08690	PF00593	TonB dependent receptor
AL543_08690	PF07715	TonB-dependent Receptor Plug Domain
AL543_08695	PF05958	tRNA (Uracil-5-)-methyltransferase
AL543_08705	PF11726	AL543_08705
AL543_08710	PF01926	50S ribosome-binding GTPase
AL543_08715	PF05930	Prophage CP4-57 regulatory protein (AlpA)
AL543_08720	PF10980	Protein of unknown function (DUF2787)
AL543_08725	PF10980	Protein of unknown function (DUF2787)
AL543_08730	PF04002	RadC-like JAB domain
AL543_08735	PF13538	UvrD-like helicase C-terminal domain
AL543_08740	PF14267	AL543_08740
AL543_08745	PF02384	N-6 DNA Methylase
AL543_08745	PF12161	HsdM N-terminal domain
AL543_08750	PF01420	Type I restriction modification DNA specificity domain
AL543_08755	PF13166	AL543_08755
AL543_08760	PF13310	AL543_08760
AL543_08765	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
AL543_08765	PF04851	Type III restriction enzyme, res subunit
AL543_08765	PF12008	Type I restriction and modification enzyme - subunit R C terminal
AL543_08770	PF00589	Phage integrase family
AL543_08770	PF13356	Domain of unknown function (DUF4102)
AL543_08775	PF07226	AL543_08775
AL543_08780	PF00440	Bacterial regulatory proteins, tetR family
AL543_08785	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL543_08785	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL543_08790	PF00140	Sigma-70 factor, region 1
AL543_08790	PF04542	Sigma-70 region 2
AL543_08790	PF04545	Sigma-70, region 4
AL543_08800	PF00005	ABC transporter
AL543_08805	PF00448	SRP54-type protein, GTPase domain
AL543_08805	PF02881	SRP54-type protein, helical bundle domain
AL543_08810	PF03602	Conserved hypothetical protein 95
AL543_08815	PF06611	AL543_08815
AL543_08820	PF07947	AL543_08820
AL543_08835	PF10694	Protein of unknown function (DUF2500)
AL543_08840	PF01757	AL543_08840
AL543_08845	PF00210	Ferritin-like domain
AL543_08850	PF00563	EAL domain
AL543_08850	PF08668	HDOD domain
AL543_08855	PF01810	AL543_08855
AL543_08860	PF12146	Putative lysophospholipase
AL543_08865	PF08282	haloacid dehalogenase-like hydrolase
AL543_08875	PF03942	AL543_08875
AL543_08880	PF00563	EAL domain
AL543_08880	PF00990	GGDEF domain
AL543_08880	PF08495	AL543_08880
AL543_08885	PF13419	Haloacid dehalogenase-like hydrolase
AL543_08890	PF00589	Phage integrase family
AL543_08890	PF02899	Phage integrase, N-terminal SAM-like domain
AL543_08895	PF04340	Protein of unknown function, DUF484
AL543_08900	PF01678	Diaminopimelate epimerase
AL543_08905	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AL543_08905	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AL543_08910	PF13627	AL543_08910
AL543_08915	PF01491	Frataxin-like domain
AL543_08920	PF01295	AL543_08920
AL543_08920	PF12633	AL543_08920
AL543_08930	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
AL543_08930	PF03900	Porphobilinogen deaminase, C-terminal domain
AL543_08935	PF02602	Uroporphyrinogen-III synthase HemD
AL543_08940	PF04375	AL543_08940
AL543_08945	PF07219	AL543_08945
AL543_08950	PF04055	Radical SAM superfamily
AL543_08950	PF06969	HemN C-terminal domain
AL543_08955	PF10675	AL543_08955
AL543_08960	PF04220	AL543_08960
AL543_08965	PF13489	Methyltransferase domain
AL543_08970	PF00034	Cytochrome c
AL543_08975	PF01926	50S ribosome-binding GTPase
AL543_08985	PF00476	DNA polymerase family A
AL543_08985	PF01367	5'-3' exonuclease, C-terminal SAM fold
AL543_08985	PF01612	3'-5' exonuclease
AL543_08985	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AL543_08990	PF00583	Acetyltransferase (GNAT) family
AL543_08995	PF00490	Delta-aminolevulinic acid dehydratase
AL543_09000	PF01026	TatD related DNase
AL543_09010	PF00581	Rhodanese-like domain
AL543_09015	PF01694	Rhomboid family
AL543_09015	PF12122	Protein of unknown function (DUF3582)
AL543_09020	PF03748	AL543_09020
AL543_09030	PF04345	Chorismate lyase
AL543_09035	PF01040	UbiA prenyltransferase family
AL543_09040	PF01553	Acyltransferase
AL543_09045	PF00717	Peptidase S24-like
AL543_09045	PF01726	LexA DNA binding domain
AL543_09050	PF04072	Leucine carboxyl methyltransferase
AL543_09055	PF01554	MatE
AL543_09060	PF00902	Sec-independent protein translocase protein (TatC)
AL543_09065	PF02416	mttA/Hcf106 family
AL543_09070	PF02416	mttA/Hcf106 family
AL543_09075	PF03109	AL543_09075
AL543_09080	PF02036	SCP-2 sterol transfer family
AL543_09085	PF01209	ubiE/COQ5 methyltransferase family
AL543_09090	PF02646	AL543_09090
AL543_09095	PF00892	EamA-like transporter family
AL543_09100	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_09100	PF08447	PAS fold
AL543_09110	PF13166	AL543_09110
AL543_09140	PF01609	Transposase DDE domain
AL543_09145	PF06527	AL543_09145
AL543_09145	PF15978	AL543_09145
AL543_09150	PF13401	AAA domain
AL543_09160	PF13358	DDE superfamily endonuclease
AL543_09160	PF13551	Winged helix-turn helix
AL543_09160	PF13592	AL543_09160
AL543_09170	PF08722	TnsA endonuclease N terminal
AL543_09175	PF03486	HI0933-like protein
AL543_09180	PF10625	AL543_09180
AL543_09185	PF00210	Ferritin-like domain
AL543_09195	PF00582	Universal stress protein family
AL543_09200	PF00892	EamA-like transporter family
AL543_09210	PF04445	Putative SAM-dependent methyltransferase
AL543_09215	PF00563	EAL domain
AL543_09215	PF00990	GGDEF domain
AL543_09215	PF13426	PAS domain
AL543_09220	PF01037	AsnC family
AL543_09220	PF13404	AsnC-type helix-turn-helix domain
AL543_09230	PF07690	Major Facilitator Superfamily
AL543_09235	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_09235	PF03466	LysR substrate binding domain
AL543_09240	PF00557	Metallopeptidase family M24
AL543_09240	PF01321	Creatinase/Prolidase N-terminal domain
AL543_09240	PF16188	AL543_09240
AL543_09240	PF16189	AL543_09240
AL543_09245	PF04055	Radical SAM superfamily
AL543_09245	PF06968	Biotin and Thiamin Synthesis associated domain
AL543_09250	PF05690	Thiazole biosynthesis protein ThiG
AL543_09255	PF02597	ThiS family
AL543_09260	PF00899	ThiF family
AL543_09265	PF02581	Thiamine monophosphate synthase/TENI
AL543_09270	PF01964	ThiC family
AL543_09270	PF13667	ThiC-associated domain
AL543_09275	PF02537	AL543_09275
AL543_09290	PF00589	Phage integrase family
AL543_09290	PF13356	Domain of unknown function (DUF4102)
AL543_09300	PF01380	SIS domain
AL543_09300	PF01418	Helix-turn-helix domain, rpiR family
AL543_09305	PF13580	SIS domain
AL543_09310	PF00367	phosphotransferase system, EIIB
AL543_09310	PF02378	Phosphotransferase system, EIIC
AL543_09320	PF13358	DDE superfamily endonuclease
AL543_09320	PF13551	Winged helix-turn helix
AL543_09320	PF13592	AL543_09320
AL543_09330	PF01420	Type I restriction modification DNA specificity domain
AL543_09335	PF13166	AL543_09335
AL543_09345	PF02384	N-6 DNA Methylase
AL543_09345	PF12161	HsdM N-terminal domain
AL543_09415	PF12724	Flavodoxin domain
AL543_09420	PF02386	Cation transport protein
AL543_09425	PF01205	Uncharacterized protein family UPF0029
AL543_09425	PF09186	Domain of unknown function (DUF1949)
AL543_09430	PF00378	Enoyl-CoA hydratase/isomerase family
AL543_09430	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AL543_09430	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AL543_09435	PF00108	Thiolase, N-terminal domain
AL543_09435	PF02803	Thiolase, C-terminal domain
AL543_09440	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_09440	PF03466	LysR substrate binding domain
AL543_09445	PF07690	Major Facilitator Superfamily
AL543_09450	PF00132	Bacterial transferase hexapeptide (six repeats)
AL543_09450	PF12804	MobA-like NTP transferase domain
AL543_09455	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
AL543_09455	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
AL543_09460	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL543_09460	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AL543_09465	PF00231	ATP synthase
AL543_09470	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL543_09470	PF00306	ATP synthase alpha/beta chain, C terminal domain
AL543_09470	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AL543_09475	PF00213	ATP synthase delta (OSCP) subunit
AL543_09480	PF00430	ATP synthase B/B' CF(0)
AL543_09485	PF00137	ATP synthase subunit C
AL543_09490	PF00119	ATP synthase A chain
AL543_09495	PF03899	AL543_09495
AL543_09500	PF02195	ParB-like nuclease domain
AL543_09505	PF13614	AAA domain
AL543_09510	PF02527	rRNA small subunit methyltransferase G
AL543_09515	PF01134	Glucose inhibited division protein A
AL543_09515	PF13932	GidA associated domain 3
AL543_09520	PF00258	Flavodoxin
AL543_09535	PF01926	50S ribosome-binding GTPase
AL543_09535	PF10396	GTP-binding protein TrmE N-terminus
AL543_09535	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
AL543_09540	PF02096	60Kd inner membrane protein
AL543_09540	PF14849	YidC periplasmic domain
AL543_09545	PF01809	AL543_09545
AL543_09550	PF00825	Ribonuclease P
AL543_09555	PF00468	Ribosomal protein L34
AL543_09560	PF00005	ABC transporter
AL543_09565	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_09570	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL543_09575	PF00308	Bacterial dnaA  protein
AL543_09575	PF08299	Bacterial dnaA protein helix-turn-helix
AL543_09575	PF11638	DnaA N-terminal domain
AL543_09580	PF00712	DNA polymerase III beta subunit, N-terminal domain
AL543_09580	PF02767	DNA polymerase III beta subunit, central domain
AL543_09580	PF02768	DNA polymerase III beta subunit, C-terminal domain
AL543_09585	PF02463	RecF/RecN/SMC N terminal domain
AL543_09590	PF00204	DNA gyrase B
AL543_09590	PF00986	DNA gyrase B subunit, carboxyl terminus
AL543_09590	PF01751	Toprim domain
AL543_09590	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_09595	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL543_09605	PF00011	Hsp20/alpha crystallin family
AL543_09610	PF00155	Aminotransferase class I and II
AL543_09615	PF02092	AL543_09615
AL543_09615	PF05746	DALR anticodon binding domain
AL543_09620	PF02091	Glycyl-tRNA synthetase alpha subunit
AL543_09625	PF01169	AL543_09625
AL543_09635	PF01206	Sulfurtransferase TusA
AL543_09645	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_09645	PF03466	LysR substrate binding domain
AL543_09650	PF00107	Zinc-binding dehydrogenase
AL543_09650	PF08240	Alcohol dehydrogenase GroES-like domain
AL543_09655	PF00291	Pyridoxal-phosphate dependent enzyme
AL543_09655	PF00585	C-terminal regulatory domain of Threonine dehydratase
AL543_09660	PF00920	Dehydratase family
AL543_09665	PF01063	Aminotransferase class IV
AL543_09670	PF13710	ACT domain
AL543_09675	PF00205	Thiamine pyrophosphate enzyme, central domain
AL543_09675	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL543_09675	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL543_09680	PF01078	Magnesium chelatase, subunit ChlI
AL543_09680	PF13335	AL543_09680
AL543_09680	PF13541	Subunit ChlI of Mg-chelatase
AL543_09685	PF01553	Acyltransferase
AL543_09690	PF01323	DSBA-like thioredoxin domain
AL543_09695	PF01636	Phosphotransferase enzyme family
AL543_09700	PF11614	IG-like fold at C-terminal of FixG, putative oxidoreductase
AL543_09700	PF12801	AL543_09700
AL543_09700	PF13746	4Fe-4S dicluster domain
AL543_09705	PF06288	Protein of unknown function (DUF1040)
AL543_09715	PF07070	AL543_09715
AL543_09720	PF03006	AL543_09720
AL543_09725	PF11355	AL543_09725
AL543_09730	PF02386	Cation transport protein
AL543_09735	PF02080	TrkA-C domain
AL543_09735	PF02254	TrkA-N domain
AL543_09740	PF01029	NusB family
AL543_09740	PF01189	NOL1/NOP2/sun family
AL543_09745	PF00551	Formyl transferase
AL543_09745	PF02911	Formyl transferase, C-terminal domain
AL543_09750	PF01327	Polypeptide deformylase
AL543_09755	PF01476	LysM domain
AL543_09760	PF02481	DNA recombination-mediator protein A
AL543_09765	PF04361	AL543_09765
AL543_09770	PF01396	AL543_09770
AL543_09775	PF02222	ATP-grasp domain
AL543_09780	PF00731	AIR carboxylase
AL543_09785	PF01300	Telomere recombination
AL543_09790	PF01218	Coproporphyrinogen III oxidase
AL543_09795	PF01488	Shikimate / quinate 5-dehydrogenase
AL543_09795	PF08501	Shikimate dehydrogenase substrate binding domain
AL543_09800	PF07369	Protein of unknown function (DUF1488)
AL543_09805	PF00132	Bacterial transferase hexapeptide (six repeats)
AL543_09850	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_09850	PF03466	LysR substrate binding domain
AL543_09855	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
AL543_09855	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
AL543_09860	PF04380	AL543_09860
AL543_09865	PF00873	AcrB/AcrD/AcrF family
AL543_09870	PF16576	AL543_09870
AL543_09875	PF00440	Bacterial regulatory proteins, tetR family
AL543_09880	PF00580	UvrD/REP helicase N-terminal domain
AL543_09880	PF13361	UvrD-like helicase C-terminal domain
AL543_09885	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL543_09920	PF00005	ABC transporter
AL543_09920	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL543_09925	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL543_09930	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_09935	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_09935	PF12911	AL543_09935
AL543_09945	PF07804	HipA-like C-terminal domain
AL543_09945	PF13657	HipA N-terminal domain
AL543_09950	PF13443	Cro/C1-type HTH DNA-binding domain
AL543_09960	PF01381	Helix-turn-helix
AL543_09985	PF01734	Patatin-like phospholipase
AL543_09995	PF00899	ThiF family
AL543_09995	PF14461	Prokaryotic E2 family B
AL543_10000	PF14464	Prokaryotic homologs of the JAB domain
AL543_10020	PF01609	Transposase DDE domain
AL543_10030	PF00589	Phage integrase family
AL543_10035	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL543_10035	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL543_10040	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
AL543_10045	PF01432	Peptidase family M3
AL543_10050	PF00580	UvrD/REP helicase N-terminal domain
AL543_10050	PF13361	UvrD-like helicase C-terminal domain
AL543_10060	PF01810	AL543_10060
AL543_10065	PF02311	AraC-like ligand binding domain
AL543_10065	PF12833	Helix-turn-helix domain
AL543_10070	PF01019	Gamma-glutamyltranspeptidase
AL543_10075	PF00892	EamA-like transporter family
AL543_10080	PF00270	DEAD/DEAH box helicase
AL543_10080	PF00271	Helicase conserved C-terminal domain
AL543_10080	PF00570	HRDC domain
AL543_10080	PF09382	RQC domain
AL543_10080	PF16124	AL543_10080
AL543_10085	PF12305	AL543_10085
AL543_10090	PF01243	Pyridoxamine 5'-phosphate oxidase
AL543_10095	PF00593	TonB dependent receptor
AL543_10095	PF07715	TonB-dependent Receptor Plug Domain
AL543_10100	PF00005	ABC transporter
AL543_10105	PF01497	Periplasmic binding protein
AL543_10110	PF01032	FecCD transport family
AL543_10115	PF01380	SIS domain
AL543_10115	PF01418	Helix-turn-helix domain, rpiR family
AL543_10125	PF13580	SIS domain
AL543_10130	PF00367	phosphotransferase system, EIIB
AL543_10130	PF02378	Phosphotransferase system, EIIC
AL543_10135	PF03350	AL543_10135
AL543_10140	PF03755	AL543_10140
AL543_10140	PF08340	AL543_10140
AL543_10145	PF01138	3' exoribonuclease family, domain 1
AL543_10145	PF03725	3' exoribonuclease family, domain 2
AL543_10150	PF00156	Phosphoribosyl transferase domain
AL543_10155	PF01609	Transposase DDE domain
AL543_10155	PF13006	AL543_10155
AL543_10160	PF03279	AL543_10160
AL543_10165	PF03279	AL543_10165
AL543_10170	PF00440	Bacterial regulatory proteins, tetR family
AL543_10175	PF02441	Flavoprotein
AL543_10175	PF04127	DNA / pantothenate metabolism flavoprotein
AL543_10185	PF04002	RadC-like JAB domain
AL543_10190	PF00830	Ribosomal L28 family
AL543_10195	PF00471	Ribosomal protein L33
AL543_10205	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
AL543_10205	PF06827	Zinc finger found in FPG and IleRS
AL543_10205	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
AL543_10210	PF01467	Cytidylyltransferase
AL543_10215	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AL543_10220	PF01609	Transposase DDE domain
AL543_10225	PF00535	Glycosyl transferase family 2
AL543_10230	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AL543_10235	PF06293	Lipopolysaccharide kinase (Kdo/WaaP) family
AL543_10240	PF07507	AL543_10240
AL543_10255	PF08282	haloacid dehalogenase-like hydrolase
AL543_10260	PF00534	Glycosyl transferases group 1
AL543_10260	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
AL543_10265	PF04488	Glycosyltransferase sugar-binding region containing DXD motif
AL543_10270	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AL543_10275	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AL543_10280	PF01755	AL543_10280
AL543_10285	PF04932	AL543_10285
AL543_10290	PF00132	Bacterial transferase hexapeptide (six repeats)
AL543_10295	PF01522	Polysaccharide deacetylase
AL543_10295	PF13439	Glycosyltransferase Family 4
AL543_10300	PF01370	NAD dependent epimerase/dehydratase family
AL543_10305	PF02706	Chain length determinant protein
AL543_10305	PF13807	AL543_10305
AL543_10310	PF16363	AL543_10310
AL543_10315	PF01554	MatE
AL543_10320	PF13460	NADH(P)-binding
AL543_10325	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL543_10325	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL543_10330	PF04230	AL543_10330
AL543_10335	PF00535	Glycosyl transferase family 2
AL543_10340	PF13692	Glycosyl transferases group 1
AL543_10345	PF14897	AL543_10345
AL543_10350	PF00534	Glycosyl transferases group 1
AL543_10350	PF13477	Glycosyl transferase 4-like
AL543_10355	PF00953	Glycosyl transferase family 4
AL543_10365	PF00924	Mechanosensitive ion channel
AL543_10370	PF03167	Uracil DNA glycosylase superfamily
AL543_10375	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL543_10380	PF04222	Protein of unknown function (DUF416)
AL543_10385	PF00571	CBS domain
AL543_10385	PF01595	AL543_10385
AL543_10390	PF00216	Bacterial DNA-binding protein
AL543_10395	PF07356	AL543_10395
AL543_10395	PF08139	AL543_10395
AL543_10400	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
AL543_10400	PF02843	Phosphoribosylglycinamide synthetase, C domain
AL543_10400	PF02844	Phosphoribosylglycinamide synthetase, N domain
AL543_10405	PF01808	AICARFT/IMPCHase bienzyme
AL543_10405	PF02142	MGS-like domain
AL543_10410	PF00376	MerR family regulatory protein
AL543_10410	PF09278	MerR, DNA binding
AL543_10415	PF00486	Transcriptional regulatory protein, C terminal
AL543_10420	PF13520	Amino acid permease
AL543_10425	PF01276	Orn/Lys/Arg decarboxylase, major domain
AL543_10425	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AL543_10425	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AL543_10430	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_10430	PF00672	HAMP domain
AL543_10430	PF17200	AL543_10430
AL543_10435	PF16357	AL543_10435
AL543_10440	PF00593	TonB dependent receptor
AL543_10440	PF07715	TonB-dependent Receptor Plug Domain
AL543_10445	PF01081	KDPG and KHG aldolase
AL543_10450	PF02447	AL543_10450
AL543_10455	PF01202	Shikimate kinase
AL543_10460	PF00920	Dehydratase family
AL543_10465	PF00356	Bacterial regulatory proteins, lacI family
AL543_10465	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL543_10470	PF02954	Bacterial regulatory protein, Fis family
AL543_10475	PF01207	Dihydrouridine synthase (Dus)
AL543_10480	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
AL543_10485	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
AL543_10485	PF02785	Biotin carboxylase C-terminal domain
AL543_10485	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL543_10490	PF00364	Biotin-requiring enzyme
AL543_10495	PF01220	Dehydroquinase class II
AL543_10500	PF00501	AMP-binding enzyme
AL543_10500	PF13193	AMP-binding enzyme C-terminal domain
AL543_10500	PF16177	AL543_10500
AL543_10505	PF00929	Exonuclease
AL543_10510	PF00027	Cyclic nucleotide-binding domain
AL543_10510	PF00571	CBS domain
AL543_10510	PF03445	AL543_10510
AL543_10510	PF10335	AL543_10510
AL543_10520	PF12832	MFS_1 like family
AL543_10525	PF00072	Response regulator receiver domain
AL543_10525	PF00512	His Kinase A (phospho-acceptor) domain
AL543_10525	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_10525	PF12860	AL543_10525
AL543_10540	PF02541	Ppx/GppA phosphatase family
AL543_10545	PF00270	DEAD/DEAH box helicase
AL543_10545	PF00271	Helicase conserved C-terminal domain
AL543_10550	PF00085	Thioredoxin
AL543_10555	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL543_10555	PF07497	Rho termination factor, RNA-binding domain
AL543_10555	PF07498	Rho termination factor, N-terminal domain
AL543_10565	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
AL543_10570	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL543_10575	PF00175	Oxidoreductase NAD-binding domain
AL543_10575	PF00970	Oxidoreductase FAD-binding domain
AL543_10620	PF13091	PLD-like domain
AL543_10630	PF13508	Acetyltransferase (GNAT) domain
AL543_10635	PF01565	FAD binding domain
AL543_10635	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
AL543_10640	PF02237	Biotin protein ligase C terminal domain
AL543_10640	PF03099	Biotin/lipoate A/B protein ligase family
AL543_10640	PF08279	HTH domain
AL543_10645	PF00485	Phosphoribulokinase / Uridine kinase family
AL543_10670	PF00009	Elongation factor Tu GTP binding domain
AL543_10670	PF03143	Elongation factor Tu C-terminal domain
AL543_10670	PF03144	Elongation factor Tu domain 2
AL543_10675	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
AL543_10680	PF00467	KOW motif
AL543_10680	PF02357	Transcription termination factor nusG
AL543_10685	PF00298	Ribosomal protein L11, RNA binding domain
AL543_10685	PF03946	Ribosomal protein L11, N-terminal domain
AL543_10690	PF00687	Ribosomal protein L1p/L10e family
AL543_10695	PF00466	Ribosomal protein L10
AL543_10700	PF00542	Ribosomal protein L7/L12 C-terminal domain
AL543_10700	PF16320	AL543_10700
AL543_10705	PF00562	RNA polymerase Rpb2, domain 6
AL543_10705	PF04560	RNA polymerase Rpb2, domain 7
AL543_10705	PF04561	RNA polymerase Rpb2, domain 2
AL543_10705	PF04563	RNA polymerase beta subunit
AL543_10705	PF04565	RNA polymerase Rpb2, domain 3
AL543_10705	PF10385	RNA polymerase beta subunit external 1 domain
AL543_10710	PF00623	RNA polymerase Rpb1, domain 2
AL543_10710	PF04983	RNA polymerase Rpb1, domain 3
AL543_10710	PF04997	RNA polymerase Rpb1, domain 1
AL543_10710	PF04998	RNA polymerase Rpb1, domain 5
AL543_10710	PF05000	RNA polymerase Rpb1, domain 4
AL543_10715	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
AL543_10720	PF00293	NUDIX domain
AL543_10720	PF09297	NADH pyrophosphatase zinc ribbon domain
AL543_10725	PF01208	Uroporphyrinogen decarboxylase (URO-D)
AL543_10730	PF00440	Bacterial regulatory proteins, tetR family
AL543_10730	PF13972	Bacterial transcriptional repressor
AL543_10740	PF01551	Peptidase family M23
AL543_10745	PF01676	Metalloenzyme superfamily
AL543_10745	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
AL543_10750	PF00892	EamA-like transporter family
AL543_10755	PF00939	Sodium:sulfate symporter transmembrane region
AL543_10760	PF02666	AL543_10760
AL543_10765	PF03193	Protein of unknown function, DUF258
AL543_10770	PF00929	Exonuclease
AL543_10815	PF08331	AL543_10815
AL543_10815	PF13484	AL543_10815
AL543_10820	PF02367	Uncharacterised P-loop hydrolase UPF0079
AL543_10825	PF01476	LysM domain
AL543_10825	PF01520	N-acetylmuramoyl-L-alanine amidase
AL543_10825	PF11741	AMIN domain
AL543_10830	PF01119	DNA mismatch repair protein, C-terminal domain
AL543_10830	PF08676	MutL C terminal dimerisation domain
AL543_10830	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_10835	PF01715	IPP transferase
AL543_10840	PF17209	AL543_10840
AL543_10845	PF01926	50S ribosome-binding GTPase
AL543_10845	PF13167	AL543_10845
AL543_10845	PF16360	AL543_10845
AL543_10850	PF01145	SPFH domain / Band 7 family
AL543_10850	PF12221	AL543_10850
AL543_10855	PF01145	SPFH domain / Band 7 family
AL543_10860	PF09838	AL543_10860
AL543_10865	PF04102	SlyX
AL543_10870	PF00400	WD domain, G-beta repeat
AL543_10875	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL543_10875	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AL543_10880	PF08348	AL543_10880
AL543_10880	PF13309	AL543_10880
AL543_10885	PF02635	DsrE/DsrF-like family
AL543_10890	PF02635	DsrE/DsrF-like family
AL543_10895	PF04077	DsrH like protein
AL543_10900	PF00164	Ribosomal protein S12/S23
AL543_10905	PF00177	Ribosomal protein S7p/S5e
AL543_10910	PF00009	Elongation factor Tu GTP binding domain
AL543_10910	PF00679	Elongation factor G C-terminus
AL543_10910	PF03144	Elongation factor Tu domain 2
AL543_10910	PF03764	Elongation factor G, domain IV
AL543_10910	PF14492	Elongation Factor G, domain II
AL543_10915	PF00009	Elongation factor Tu GTP binding domain
AL543_10915	PF03143	Elongation factor Tu C-terminal domain
AL543_10915	PF03144	Elongation factor Tu domain 2
AL543_10920	PF04324	BFD-like [2Fe-2S] binding domain
AL543_10925	PF00210	Ferritin-like domain
AL543_10930	PF01250	Ribosomal protein S6
AL543_10935	PF00436	Single-strand binding protein family
AL543_10940	PF01084	Ribosomal protein S18
AL543_10945	PF01281	Ribosomal protein L9, N-terminal domain
AL543_10945	PF03948	Ribosomal protein L9, C-terminal domain
AL543_10950	PF04338	Protein of unknown function, DUF481
AL543_10955	PF00772	DnaB-like helicase N terminal domain
AL543_10955	PF03796	DnaB-like helicase C terminal domain
AL543_10960	PF00842	Alanine racemase, C-terminal domain
AL543_10960	PF01168	Alanine racemase, N-terminal domain
AL543_10965	PF01894	Uncharacterised protein family UPF0047
AL543_10970	PF00342	Phosphoglucose isomerase
AL543_10975	PF13690	Chemotaxis phosphatase CheX
AL543_10980	PF01475	Ferric uptake regulator family
AL543_10985	PF01207	Dihydrouridine synthase (Dus)
AL543_10990	PF09583	AL543_10990
AL543_10995	PF13505	Outer membrane protein beta-barrel domain
AL543_11010	PF00175	Oxidoreductase NAD-binding domain
AL543_11010	PF00258	Flavodoxin
AL543_11010	PF00667	FAD binding domain
AL543_11015	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL543_11015	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL543_11020	PF01507	Phosphoadenosine phosphosulfate reductase family
AL543_11090	PF00999	Sodium/hydrogen exchanger family
AL543_11095	PF00809	Pterin binding enzyme
AL543_11095	PF02310	B12 binding domain
AL543_11095	PF02574	Homocysteine S-methyltransferase
AL543_11095	PF02607	B12 binding domain
AL543_11095	PF02965	Vitamin B12 dependent methionine synthase, activation domain
AL543_11100	PF00696	Amino acid kinase family
AL543_11105	PF00266	Aminotransferase class-V
AL543_11110	PF04932	AL543_11110
AL543_11110	PF11846	AL543_11110
AL543_11110	PF15864	AL543_11110
AL543_11115	PF00005	ABC transporter
AL543_11120	PF00483	Nucleotidyl transferase
AL543_11125	PF00196	Bacterial regulatory proteins, luxR family
AL543_11130	PF00436	Single-strand binding protein family
AL543_11135	PF00563	EAL domain
AL543_11135	PF00990	GGDEF domain
AL543_11135	PF17157	AL543_11135
AL543_11145	PF04612	Type II secretion system (T2SS), protein M
AL543_11155	PF00263	AL543_11155
AL543_11155	PF07655	AL543_11155
AL543_11160	PF13401	AAA domain
AL543_11170	PF00437	Type II/IV secretion system protein
AL543_11170	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
AL543_11175	PF00482	Type II secretion system (T2SS), protein F
AL543_11185	PF07963	Prokaryotic N-terminal methylation motif
AL543_11190	PF07963	Prokaryotic N-terminal methylation motif
AL543_11195	PF07963	Prokaryotic N-terminal methylation motif
AL543_11200	PF07963	Prokaryotic N-terminal methylation motif
AL543_11205	PF07963	Prokaryotic N-terminal methylation motif
AL543_11220	PF06723	MreB/Mbl protein
AL543_11225	PF04085	rod shape-determining protein MreC
AL543_11230	PF04093	AL543_11230
AL543_11235	PF02545	Maf-like protein
AL543_11240	PF00575	S1 RNA binding domain
AL543_11240	PF10150	Ribonuclease E/G family
AL543_11245	PF13116	AL543_11245
AL543_11245	PF13502	AL543_11245
AL543_11250	PF00795	Carbon-nitrogen hydrolase
AL543_11255	PF01523	Putative modulator of DNA gyrase
AL543_11260	PF03063	Prismane/CO dehydrogenase family
AL543_11265	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL543_11265	PF00175	Oxidoreductase NAD-binding domain
AL543_11265	PF00970	Oxidoreductase FAD-binding domain
AL543_11270	PF02274	Amidinotransferase
AL543_11275	PF06877	Regulator of ribonuclease activity B
AL543_11280	PF01380	SIS domain
AL543_11280	PF01418	Helix-turn-helix domain, rpiR family
AL543_11285	PF01168	Alanine racemase, N-terminal domain
AL543_11285	PF14031	Putative serine dehydratase domain
AL543_11290	PF07969	Amidohydrolase family
AL543_11295	PF13358	DDE superfamily endonuclease
AL543_11295	PF13551	Winged helix-turn helix
AL543_11295	PF13592	AL543_11295
AL543_11300	PF01042	Endoribonuclease L-PSP
AL543_11305	PF01609	Transposase DDE domain
AL543_11310	PF00474	Sodium:solute symporter family
AL543_11315	PF00728	Glycosyl hydrolase family 20, catalytic domain
AL543_11315	PF02838	Glycosyl hydrolase family 20, domain 2
AL543_11320	PF10282	Lactonase, 7-bladed beta-propeller
AL543_11330	PF09834	AL543_11330
AL543_11335	PF00582	Universal stress protein family
AL543_11340	PF06808	AL543_11340
AL543_11340	PF11874	AL543_11340
AL543_11345	PF16868	AL543_11345
AL543_11350	PF01316	Arginine repressor, DNA binding domain
AL543_11350	PF02863	Arginine repressor, C-terminal domain
AL543_11355	PF00056	lactate/malate dehydrogenase, NAD binding domain
AL543_11355	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
AL543_11360	PF13520	Amino acid permease
AL543_11365	PF00348	Polyprenyl synthetase
AL543_11370	PF00829	Ribosomal prokaryotic L21 protein
AL543_11375	PF01016	Ribosomal L27 protein
AL543_11380	PF01018	GTP1/OBG
AL543_11380	PF01926	50S ribosome-binding GTPase
AL543_11385	PF06738	AL543_11385
AL543_11390	PF12821	AL543_11390
AL543_11395	PF00186	Dihydrofolate reductase
AL543_11400	PF00149	Calcineurin-like phosphoesterase
AL543_11405	PF04379	Protein of unknown function (DUF525)
AL543_11410	PF00398	Ribosomal RNA adenine dimethylase
AL543_11415	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
AL543_11420	PF00639	PPIC-type PPIASE domain
AL543_11420	PF09312	SurA N-terminal domain
AL543_11420	PF13616	PPIC-type PPIASE domain
AL543_11425	PF03968	OstA-like protein
AL543_11425	PF04453	Organic solvent tolerance protein
AL543_11430	PF00226	DnaJ domain
AL543_11430	PF05099	Tellurite resistance protein TerB
AL543_11460	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_11460	PF17200	AL543_11460
AL543_11485	PF01464	Transglycosylase SLT domain
AL543_11485	PF11873	Domain of unknown function (DUF3393)
AL543_11490	PF04362	Bacterial Fe(2+) trafficking
AL543_11495	PF00633	Helix-hairpin-helix motif
AL543_11495	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL543_11495	PF14815	NUDIX domain
AL543_11500	PF02390	Putative methyltransferase
AL543_11505	PF04960	Glutaminase
AL543_11510	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL543_11515	PF04055	Radical SAM superfamily
AL543_11515	PF06969	HemN C-terminal domain
AL543_11520	PF01725	Ham1 family
AL543_11525	PF14467	Domain of unknown function (DUF4426)
AL543_11530	PF02594	Uncharacterised ACR, YggU family COG1872
AL543_11535	PF02325	AL543_11535
AL543_11540	PF03807	NADP oxidoreductase coenzyme F420-dependent
AL543_11540	PF14748	Pyrroline-5-carboxylate reductase dimerisation
AL543_11545	PF01168	Alanine racemase, N-terminal domain
AL543_11550	PF00437	Type II/IV secretion system protein
AL543_11555	PF00437	Type II/IV secretion system protein
AL543_11560	PF00196	Bacterial regulatory proteins, luxR family
AL543_11565	PF00579	tRNA synthetases class I (W and Y)
AL543_11565	PF01479	S4 domain
AL543_11570	PF03652	Uncharacterised protein family (UPF0081)
AL543_11575	PF02622	Uncharacterized ACR, COG1678
AL543_11580	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
AL543_11580	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
AL543_11585	PF04452	RNA methyltransferase
AL543_11590	PF04231	Endonuclease I
AL543_11595	PF10263	AL543_11595
AL543_11595	PF17283	AL543_11595
AL543_11600	PF00438	S-adenosylmethionine synthetase, N-terminal domain
AL543_11600	PF02772	S-adenosylmethionine synthetase, central domain
AL543_11600	PF02773	S-adenosylmethionine synthetase, C-terminal domain
AL543_11610	PF00456	Transketolase, thiamine diphosphate binding domain
AL543_11610	PF02779	Transketolase, pyrimidine binding domain
AL543_11610	PF02780	Transketolase, C-terminal domain
AL543_11615	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_11615	PF03466	LysR substrate binding domain
AL543_11620	PF00593	TonB dependent receptor
AL543_11620	PF07715	TonB-dependent Receptor Plug Domain
AL543_11625	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL543_11625	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL543_11630	PF00162	Phosphoglycerate kinase
AL543_11635	PF01116	Fructose-bisphosphate aldolase class-II
AL543_11640	PF00924	Mechanosensitive ion channel
AL543_11640	PF05552	Conserved TM helix
AL543_11645	PF01797	Transposase IS200 like
AL543_11650	PF01810	AL543_11650
AL543_11655	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_11655	PF03466	LysR substrate binding domain
AL543_11660	PF04402	Protein of unknown function (DUF541)
AL543_11665	PF00224	Pyruvate kinase, barrel domain
AL543_11665	PF02887	Pyruvate kinase, alpha/beta domain
AL543_11670	PF00455	AL543_11670
AL543_11670	PF08220	DeoR-like helix-turn-helix domain
AL543_11675	PF01380	SIS domain
AL543_11675	PF13522	Glutamine amidotransferase domain
AL543_11680	PF03480	Bacterial extracellular solute-binding protein, family 7
AL543_11685	PF01553	Acyltransferase
AL543_11685	PF13444	Acetyltransferase (GNAT) domain
AL543_11695	PF00140	Sigma-70 factor, region 1
AL543_11695	PF03979	Sigma-70 factor, region 1
AL543_11695	PF04539	Sigma-70 region 3
AL543_11695	PF04542	Sigma-70 region 2
AL543_11695	PF04545	Sigma-70, region 4
AL543_11695	PF04546	Sigma-70, non-essential region
AL543_11700	PF01807	CHC2 zinc finger
AL543_11700	PF08275	DNA primase catalytic core, N-terminal domain
AL543_11700	PF08278	DNA primase DnaG DnaB-binding
AL543_11700	PF10410	DnaB-helicase binding domain of primase
AL543_11700	PF13155	Toprim-like
AL543_11705	PF09424	Yqey-like protein
AL543_11710	PF01165	Ribosomal protein S21
AL543_11715	PF00814	Glycoprotease family
AL543_11720	PF12697	Alpha/beta hydrolase family
AL543_11725	PF02660	AL543_11725
AL543_11735	PF02152	Dihydroneopterin aldolase
AL543_11740	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
AL543_11745	PF02673	AL543_11745
AL543_11750	PF04977	Septum formation initiator
AL543_11755	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
AL543_11760	PF02542	YgbB family
AL543_11765	PF01142	tRNA pseudouridine synthase D (TruD)
AL543_11770	PF01975	Survival protein SurE
AL543_11775	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
AL543_11780	PF01476	LysM domain
AL543_11780	PF01551	Peptidase family M23
AL543_11785	PF00140	Sigma-70 factor, region 1
AL543_11785	PF04539	Sigma-70 region 3
AL543_11785	PF04542	Sigma-70 region 2
AL543_11785	PF04545	Sigma-70, region 4
AL543_11790	PF00488	MutS domain V
AL543_11790	PF01624	MutS domain I
AL543_11790	PF05188	MutS domain II
AL543_11790	PF05190	MutS family domain IV
AL543_11790	PF05192	MutS domain III
AL543_11795	PF00291	Pyridoxal-phosphate dependent enzyme
AL543_11800	PF13531	Bacterial extracellular solute-binding protein
AL543_11805	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_11810	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_11815	PF00005	ABC transporter
AL543_11815	PF12857	AL543_11815
AL543_11820	PF02464	Competence-damaged protein
AL543_11825	PF00154	recA bacterial DNA recombination protein
AL543_11830	PF02631	RecX family
AL543_11835	PF01411	tRNA synthetases class II (A)
AL543_11835	PF02272	DHHA1 domain
AL543_11835	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL543_11840	PF00696	Amino acid kinase family
AL543_11845	PF02599	Global regulator protein family
AL543_11890	PF04277	AL543_11890
AL543_11895	PF00364	Biotin-requiring enzyme
AL543_11895	PF00682	HMGL-like
AL543_11895	PF02436	Conserved carboxylase domain
AL543_11900	PF03977	AL543_11900
AL543_11905	PF08240	Alcohol dehydrogenase GroES-like domain
AL543_11905	PF13602	Zinc-binding dehydrogenase
AL543_11910	PF09335	AL543_11910
AL543_11915	PF00675	Insulinase (Peptidase family M16)
AL543_11915	PF05193	Peptidase M16 inactive domain
AL543_11920	PF04262	Glutamate-cysteine ligase
AL543_11925	PF02664	S-Ribosylhomocysteinase (LuxS)
AL543_11930	PF00571	CBS domain
AL543_11930	PF01595	AL543_11930
AL543_11930	PF03471	Transporter associated domain
AL543_11935	PF01578	AL543_11935
AL543_11940	PF00448	SRP54-type protein, GTPase domain
AL543_11940	PF02881	SRP54-type protein, helical bundle domain
AL543_11940	PF02978	Signal peptide binding domain
AL543_11945	PF00886	Ribosomal protein S16
AL543_11950	PF01782	RimM N-terminal domain
AL543_11950	PF05239	PRC-barrel domain
AL543_11955	PF01746	tRNA (Guanine-1)-methyltransferase
AL543_11960	PF01245	Ribosomal protein L19
AL543_11965	PF13180	PDZ domain
AL543_11965	PF13365	Trypsin-like peptidase domain
AL543_11970	PF00595	PDZ domain (Also known as DHR or GLGF)
AL543_11970	PF13180	PDZ domain
AL543_11970	PF13365	Trypsin-like peptidase domain
AL543_11975	PF06295	AL543_11975
AL543_11980	PF03969	AFG1-like ATPase
AL543_11990	PF00572	Ribosomal protein L13
AL543_11995	PF00380	Ribosomal protein S9/S16
AL543_12000	PF00355	Rieske [2Fe-2S] domain
AL543_12000	PF10399	Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
AL543_12005	PF00032	Cytochrome b(C-terminal)/b6/petD
AL543_12005	PF00033	Cytochrome b(N-terminal)/b6/petB
AL543_12010	PF02167	Cytochrome C1 family
AL543_12015	PF00043	Glutathione S-transferase, C-terminal domain
AL543_12015	PF13417	Glutathione S-transferase, N-terminal domain
AL543_12020	PF04386	Stringent starvation protein B
AL543_12025	PF04972	BON domain
AL543_12030	PF13580	SIS domain
AL543_12035	PF02021	Uncharacterised protein family UPF0102
AL543_12040	PF04348	LppC putative lipoprotein
AL543_12045	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL543_12050	PF00440	Bacterial regulatory proteins, tetR family
AL543_12055	PF00156	Phosphoribosyl transferase domain
AL543_12060	PF00484	Carbonic anhydrase
AL543_12065	PF00916	AL543_12065
AL543_12065	PF01740	STAS domain
AL543_12070	PF00005	ABC transporter
AL543_12075	PF01061	AL543_12075
AL543_12080	PF02569	Pantoate-beta-alanine ligase
AL543_12085	PF02548	Ketopantoate hydroxymethyltransferase
AL543_12090	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
AL543_12095	PF01743	Poly A polymerase head domain
AL543_12095	PF12626	Polymerase A arginine-rich C-terminus
AL543_12095	PF12627	Probable RNA and SrmB- binding site of polymerase A
AL543_12100	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AL543_12105	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AL543_12110	PF03749	Sugar fermentation stimulation protein
AL543_12115	PF00270	DEAD/DEAH box helicase
AL543_12115	PF00271	Helicase conserved C-terminal domain
AL543_12115	PF04408	Helicase associated domain (HA2)
AL543_12115	PF08482	AL543_12115
AL543_12120	PF00905	Penicillin binding protein transpeptidase domain
AL543_12120	PF00912	Transglycosylase
AL543_12120	PF14814	Bifunctional transglycosylase second domain
AL543_12125	PF01734	Patatin-like phospholipase
AL543_12125	PF07244	Surface antigen variable number repeat
AL543_12130	PF00330	Aconitase family (aconitate hydratase)
AL543_12130	PF06434	Aconitate hydratase 2 N-terminus
AL543_12130	PF11791	Aconitate B N-terminal domain
AL543_12135	PF06062	AL543_12135
AL543_12140	PF00543	Nitrogen regulatory protein P-II
AL543_12145	PF00909	Ammonium Transporter Family
AL543_12150	PF13343	Bacterial extracellular solute-binding protein
AL543_12155	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_12160	PF00005	ABC transporter
AL543_12160	PF08402	TOBE domain
AL543_12165	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL543_12165	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL543_12165	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL543_12165	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL543_12170	PF06165	Glycosyltransferase family 36
AL543_12170	PF17167	AL543_12170
AL543_12175	PF00728	Glycosyl hydrolase family 20, catalytic domain
AL543_12175	PF02838	Glycosyl hydrolase family 20, domain 2
AL543_12180	PF01869	BadF/BadG/BcrA/BcrD ATPase family
AL543_12185	PF00759	Glycosyl hydrolase family 9
AL543_12185	PF02927	N-terminal ig-like domain of cellulase
AL543_12190	PF00005	ABC transporter
AL543_12190	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL543_12195	PF00005	ABC transporter
AL543_12195	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL543_12200	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_12200	PF12911	AL543_12200
AL543_12205	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_12210	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL543_12215	PF00072	Response regulator receiver domain
AL543_12215	PF00512	His Kinase A (phospho-acceptor) domain
AL543_12215	PF00672	HAMP domain
AL543_12215	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_12215	PF13188	PAS domain
AL543_12220	PF05175	Methyltransferase small domain
AL543_12220	PF08468	Methyltransferase small domain N-terminal
AL543_12225	PF01594	AL543_12225
AL543_12235	PF00202	Aminotransferase class-III
AL543_12245	PF01521	Iron-sulphur cluster biosynthesis
AL543_12250	PF16576	AL543_12250
AL543_12255	PF00873	AcrB/AcrD/AcrF family
AL543_12260	PF01551	Peptidase family M23
AL543_12260	PF08525	AL543_12260
AL543_12265	PF00579	tRNA synthetases class I (W and Y)
AL543_12270	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
AL543_12275	PF13609	Gram-negative porin
AL543_12280	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL543_12280	PF03449	Transcription elongation factor, N-terminal
AL543_12285	PF01985	CRS1 / YhbY (CRM) domain
AL543_12290	PF01728	FtsJ-like methyltransferase
AL543_12295	PF00004	ATPase family associated with various cellular activities (AAA)
AL543_12295	PF01434	Peptidase family M41
AL543_12295	PF06480	FtsH Extracellular
AL543_12300	PF00809	Pterin binding enzyme
AL543_12305	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL543_12305	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL543_12305	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL543_12305	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL543_12315	PF03840	Preprotein translocase SecG subunit
AL543_12330	PF02576	Uncharacterised BCR, YhbC family COG0779
AL543_12330	PF17384	AL543_12330
AL543_12335	PF08529	NusA N-terminal domain
AL543_12335	PF13184	NusA-like KH domain
AL543_12335	PF14520	Helix-hairpin-helix domain
AL543_12340	PF00009	Elongation factor Tu GTP binding domain
AL543_12340	PF04760	Translation initiation factor IF-2, N-terminal region
AL543_12340	PF08364	AL543_12340
AL543_12340	PF11987	Translation-initiation factor 2
AL543_12345	PF02033	Ribosome-binding factor A
AL543_12350	PF01509	TruB family pseudouridylate synthase (N terminal domain)
AL543_12350	PF09157	Pseudouridine synthase II TruB, C-terminal
AL543_12350	PF16198	AL543_12350
AL543_12355	PF00312	Ribosomal protein S15
AL543_12360	PF00013	KH domain
AL543_12360	PF00575	S1 RNA binding domain
AL543_12360	PF01138	3' exoribonuclease family, domain 1
AL543_12360	PF03725	3' exoribonuclease family, domain 2
AL543_12360	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
AL543_12370	PF01047	MarR family
AL543_12375	PF01554	MatE
AL543_12380	PF01136	AL543_12380
AL543_12385	PF01136	AL543_12385
AL543_12390	PF00563	EAL domain
AL543_12390	PF00990	GGDEF domain
AL543_12390	PF08448	PAS fold
AL543_12390	PF13188	PAS domain
AL543_12395	PF02036	SCP-2 sterol transfer family
AL543_12400	PF13527	Acetyltransferase (GNAT) domain
AL543_12405	PF03603	DNA polymerase III psi subunit
AL543_12410	PF00583	Acetyltransferase (GNAT) family
AL543_12415	PF00563	EAL domain
AL543_12415	PF00990	GGDEF domain
AL543_12420	PF00009	Elongation factor Tu GTP binding domain
AL543_12420	PF03144	Elongation factor Tu domain 2
AL543_12420	PF16658	AL543_12420
AL543_12425	PF00270	DEAD/DEAH box helicase
AL543_12425	PF00271	Helicase conserved C-terminal domain
AL543_12430	PF05175	Methyltransferase small domain
AL543_12435	PF05525	AL543_12435
AL543_12445	PF00152	tRNA synthetases class II (D, K and N)
AL543_12445	PF01336	OB-fold nucleic acid binding domain
AL543_12450	PF00158	Sigma-54 interaction domain
AL543_12450	PF02954	Bacterial regulatory protein, Fis family
AL543_12465	PF00248	Aldo/keto reductase family
AL543_12475	PF02976	DNA mismatch repair enzyme MutH
AL543_12480	PF00293	NUDIX domain
AL543_12485	PF00391	PEP-utilising enzyme, mobile domain
AL543_12485	PF01590	GAF domain
AL543_12485	PF02896	PEP-utilising enzyme, TIM barrel domain
AL543_12485	PF05524	PEP-utilising enzyme, N-terminal
AL543_12490	PF01925	AL543_12490
AL543_12495	PF01790	AL543_12495
AL543_12500	PF00303	Thymidylate synthase
AL543_12505	PF02690	AL543_12505
AL543_12510	PF13358	DDE superfamily endonuclease
AL543_12510	PF13384	Homeodomain-like domain
AL543_12510	PF13592	AL543_12510
AL543_12515	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_12515	PF03466	LysR substrate binding domain
AL543_12520	PF01022	Bacterial regulatory protein, arsR family
AL543_12525	PF01649	Ribosomal protein S20
AL543_12530	PF03023	AL543_12530
AL543_12535	PF01687	Riboflavin kinase
AL543_12535	PF06574	FAD synthetase
AL543_12540	PF00133	tRNA synthetases class I (I, L, M and V)
AL543_12540	PF06827	Zinc finger found in FPG and IleRS
AL543_12540	PF08264	Anticodon-binding domain of tRNA
AL543_12545	PF01252	AL543_12545
AL543_12550	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL543_12555	PF02401	LytB protein
AL543_12560	PF02554	AL543_12560
AL543_12560	PF13722	AL543_12560
AL543_12565	PF10973	AL543_12565
AL543_12570	PF00999	Sodium/hydrogen exchanger family
AL543_12570	PF02254	TrkA-N domain
AL543_12575	PF13580	SIS domain
AL543_12580	PF03702	Uncharacterised protein family (UPF0075)
AL543_12585	PF00933	Glycosyl hydrolase family 3 N terminal domain
AL543_12590	PF00072	Response regulator receiver domain
AL543_12590	PF04397	LytTr DNA-binding domain
AL543_12595	PF06580	AL543_12595
AL543_12595	PF07694	5TMR of 5TMR-LYT
AL543_12595	PF13492	GAF domain
AL543_12600	PF00793	DAHP synthetase I family
AL543_12605	PF01817	Chorismate mutase type II
AL543_12605	PF02153	Prephenate dehydrogenase
AL543_12610	PF07238	PilZ domain
AL543_12615	PF00005	ABC transporter
AL543_12615	PF12848	ABC transporter
AL543_12620	PF01464	Transglycosylase SLT domain
AL543_12620	PF14718	Soluble lytic murein transglycosylase L domain
AL543_12625	PF01371	Trp repressor protein
AL543_12630	PF01931	Protein of unknown function DUF84
AL543_12635	PF00563	EAL domain
AL543_12635	PF00990	GGDEF domain
AL543_12640	PF13416	Bacterial extracellular solute-binding protein
AL543_12645	PF00800	Prephenate dehydratase
AL543_12645	PF01817	Chorismate mutase type II
AL543_12650	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
AL543_12655	PF01797	Transposase IS200 like
AL543_12660	PF13525	Outer membrane lipoprotein
AL543_12665	PF00849	RNA pseudouridylate synthase
AL543_12665	PF01479	S4 domain
AL543_12670	PF02578	Multi-copper polyphenol oxidoreductase laccase
AL543_12675	PF00004	ATPase family associated with various cellular activities (AAA)
AL543_12675	PF02861	Clp amino terminal domain
AL543_12675	PF07724	AAA domain (Cdc48 subfamily)
AL543_12675	PF10431	C-terminal, D2-small domain, of ClpB protein
AL543_12755	PF03929	AL543_12755
AL543_12760	PF11804	AL543_12760
AL543_12765	PF00593	TonB dependent receptor
AL543_12765	PF07715	TonB-dependent Receptor Plug Domain
AL543_12770	PF13580	SIS domain
AL543_12785	PF00072	Response regulator receiver domain
AL543_12785	PF00486	Transcriptional regulatory protein, C terminal
AL543_12790	PF01738	Dienelactone hydrolase family
AL543_12795	PF08921	Domain of unknown function (DUF1904)
AL543_12810	PF00881	Nitroreductase family
AL543_12815	PF12838	4Fe-4S dicluster domain
AL543_12820	PF01136	AL543_12820
AL543_12820	PF16325	AL543_12820
AL543_12825	PF04381	Putative exonuclease, RdgC
AL543_12830	PF00072	Response regulator receiver domain
AL543_12830	PF00486	Transcriptional regulatory protein, C terminal
AL543_12835	PF00512	His Kinase A (phospho-acceptor) domain
AL543_12835	PF00989	PAS fold
AL543_12835	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_12835	PF11808	AL543_12835
AL543_12840	PF12849	PBP superfamily domain
AL543_12845	PF02541	Ppx/GppA phosphatase family
AL543_12850	PF02503	Polyphosphate kinase middle domain
AL543_12850	PF13089	Polyphosphate kinase N-terminal domain
AL543_12850	PF13090	Polyphosphate kinase C-terminal domain
AL543_12855	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_12860	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_12865	PF00005	ABC transporter
AL543_12870	PF01895	PhoU domain
AL543_12875	PF03976	Polyphosphate kinase 2 (PPK2)
AL543_12880	PF03932	CutC family
AL543_12885	PF00578	AhpC/TSA family
AL543_12885	PF10417	C-terminal domain of 1-Cys peroxiredoxin
AL543_12890	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_12890	PF03466	LysR substrate binding domain
AL543_12895	PF01274	Malate synthase
AL543_12900	PF00463	Isocitrate lyase family
AL543_12905	PF00571	CBS domain
AL543_12910	PF02547	Queuosine biosynthesis protein
AL543_12920	PF01702	Queuine tRNA-ribosyltransferase
AL543_12925	PF02699	Preprotein translocase subunit
AL543_12930	PF02355	Protein export membrane protein
AL543_12930	PF07549	SecD/SecF GG Motif
AL543_12930	PF13721	SecD export protein N-terminal TM region
AL543_12935	PF02355	Protein export membrane protein
AL543_12935	PF07549	SecD/SecF GG Motif
AL543_12940	PF00459	Inositol monophosphatase family
AL543_12945	PF00588	SpoU rRNA Methylase family
AL543_12950	PF02082	Transcriptional regulator
AL543_12955	PF00266	Aminotransferase class-V
AL543_12960	PF01592	NifU-like N terminal domain
AL543_12965	PF01521	Iron-sulphur cluster biosynthesis
AL543_12970	PF00226	DnaJ domain
AL543_12970	PF07743	HSCB C-terminal oligomerisation domain
AL543_12975	PF00012	Hsp70 protein
AL543_12980	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL543_12985	PF04384	Iron-sulphur cluster assembly
AL543_12990	PF00883	Cytosol aminopeptidase family, catalytic domain
AL543_12990	PF12404	AL543_12990
AL543_12995	PF00334	Nucleoside diphosphate kinase
AL543_13000	PF04055	Radical SAM superfamily
AL543_13005	PF13413	Helix-turn-helix domain
AL543_13005	PF13464	AL543_13005
AL543_13010	PF04551	GcpE protein
AL543_13015	PF03129	Anticodon binding domain
AL543_13015	PF13393	Histidyl-tRNA synthetase
AL543_13020	PF09976	Tetratricopeptide repeat
AL543_13025	PF13360	PQQ-like domain
AL543_13030	PF01926	50S ribosome-binding GTPase
AL543_13030	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
AL543_13040	PF07191	zinc-ribbons
AL543_13045	PF02601	AL543_13045
AL543_13045	PF13742	AL543_13045
AL543_13050	PF00478	IMP dehydrogenase / GMP reductase domain
AL543_13050	PF00571	CBS domain
AL543_13055	PF00117	Glutamine amidotransferase class-I
AL543_13055	PF00958	GMP synthase C terminal domain
AL543_13055	PF02540	NAD synthase
AL543_13060	PF00589	Phage integrase family
AL543_13060	PF13356	Domain of unknown function (DUF4102)
AL543_13065	PF13304	AAA domain
AL543_13070	PF13245	Part of AAA domain
AL543_13070	PF13361	UvrD-like helicase C-terminal domain
AL543_13080	PF05930	Prophage CP4-57 regulatory protein (AlpA)
AL543_13085	PF13481	AAA domain
AL543_13105	PF04610	AL543_13105
AL543_13135	PF13358	DDE superfamily endonuclease
AL543_13135	PF13551	Winged helix-turn helix
AL543_13135	PF13592	AL543_13135
AL543_13150	PF02661	Fic/DOC family
AL543_13155	PF01609	Transposase DDE domain
AL543_13165	PF00589	Phage integrase family
AL543_13170	PF00182	Chitinase class I
AL543_13170	PF02839	Carbohydrate binding domain
AL543_13175	PF01184	AL543_13175
AL543_13180	PF01797	Transposase IS200 like
AL543_13185	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_13185	PF03466	LysR substrate binding domain
AL543_13195	PF01235	AL543_13195
AL543_13200	PF01266	FAD dependent oxidoreductase
AL543_13205	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_13205	PF03466	LysR substrate binding domain
AL543_13210	PF00805	Pentapeptide repeats (8 copies)
AL543_13210	PF07885	Ion channel
AL543_13215	PF08883	Dopa 4,5-dioxygenase family
AL543_13220	PF00563	EAL domain
AL543_13220	PF12792	AL543_13220
AL543_13230	PF00072	Response regulator receiver domain
AL543_13230	PF12431	AL543_13230
AL543_13235	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_13235	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
AL543_13235	PF17203	AL543_13235
AL543_13240	PF03977	AL543_13240
AL543_13245	PF00364	Biotin-requiring enzyme
AL543_13245	PF00682	HMGL-like
AL543_13245	PF02436	Conserved carboxylase domain
AL543_13250	PF04277	AL543_13250
AL543_13255	PF03390	AL543_13255
AL543_13260	PF08218	Citrate lyase ligase C-terminal domain
AL543_13260	PF13673	Acetyltransferase (GNAT) domain
AL543_13265	PF06857	AL543_13265
AL543_13270	PF03328	HpcH/HpaI aldolase/citrate lyase family
AL543_13275	PF04223	Citrate lyase, alpha subunit (CitF)
AL543_13280	PF03802	AL543_13280
AL543_13285	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
AL543_13290	PF10000	ACT domain
AL543_13290	PF13840	ACT domain
AL543_13295	PF00588	SpoU rRNA Methylase family
AL543_13300	PF11953	Domain of unknown function (DUF3470)
AL543_13300	PF13187	4Fe-4S dicluster domain
AL543_13305	PF01593	Flavin containing amine oxidoreductase
AL543_13320	PF13358	DDE superfamily endonuclease
AL543_13320	PF13384	Homeodomain-like domain
AL543_13320	PF13592	AL543_13320
AL543_13330	PF01609	Transposase DDE domain
AL543_13335	PF13358	DDE superfamily endonuclease
AL543_13335	PF13384	Homeodomain-like domain
AL543_13335	PF13592	AL543_13335
AL543_13345	PF00176	SNF2 family N-terminal domain
AL543_13345	PF00271	Helicase conserved C-terminal domain
AL543_13355	PF08665	AL543_13355
AL543_13375	PF00589	Phage integrase family
AL543_13375	PF13356	Domain of unknown function (DUF4102)
AL543_13385	PF01668	SmpB protein
AL543_13390	PF03364	Polyketide cyclase / dehydrase and lipid transport
AL543_13395	PF03658	RnfH family Ubiquitin
AL543_13400	PF04355	SmpA / OmlA family
AL543_13405	PF02463	RecF/RecN/SMC N terminal domain
AL543_13410	PF01513	ATP-NAD kinase
AL543_13415	PF01025	GrpE
AL543_13420	PF00012	Hsp70 protein
AL543_13425	PF00226	DnaJ domain
AL543_13425	PF00684	DnaJ central domain
AL543_13425	PF01556	DnaJ C terminal domain
AL543_13430	PF07963	Prokaryotic N-terminal methylation motif
AL543_13430	PF16732	AL543_13430
AL543_13435	PF07963	Prokaryotic N-terminal methylation motif
AL543_13435	PF12019	Type II transport protein GspH
AL543_13440	PF07963	Prokaryotic N-terminal methylation motif
AL543_13450	PF07963	Prokaryotic N-terminal methylation motif
AL543_13460	PF03806	AL543_13460
AL543_13465	PF14437	AL543_13465
AL543_13475	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL543_13475	PF01464	Transglycosylase SLT domain
AL543_13485	PF02769	AIR synthase related protein, C-terminal domain
AL543_13485	PF13507	CobB/CobQ-like glutamine amidotransferase domain
AL543_13490	PF14056	AL543_13490
AL543_13495	PF06786	AL543_13495
AL543_13500	PF04391	AL543_13500
AL543_13505	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL543_13505	PF03129	Anticodon binding domain
AL543_13505	PF04073	Aminoacyl-tRNA editing domain
AL543_13510	PF01980	Uncharacterised protein family UPF0066
AL543_13515	PF01197	Ribosomal protein L31
AL543_13520	PF00444	Ribosomal protein L36
AL543_13525	PF03806	AL543_13525
AL543_13530	PF02639	AL543_13530
AL543_13540	PF13302	Acetyltransferase (GNAT) domain
AL543_13545	PF11743	AL543_13545
AL543_13550	PF12069	AL543_13550
AL543_13555	PF04287	tRNA pseudouridine synthase C
AL543_13560	PF00849	RNA pseudouridylate synthase
AL543_13565	PF02779	Transketolase, pyrimidine binding domain
AL543_13565	PF02780	Transketolase, C-terminal domain
AL543_13565	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
AL543_13570	PF00348	Polyprenyl synthetase
AL543_13575	PF02609	Exonuclease VII small subunit
AL543_13580	PF01618	AL543_13580
AL543_13585	PF00691	OmpA family
AL543_13585	PF13677	AL543_13585
AL543_13590	PF02568	Thiamine biosynthesis protein (ThiI)
AL543_13590	PF02926	THUMP domain
AL543_13600	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_13600	PF03466	LysR substrate binding domain
AL543_13605	PF04241	AL543_13605
AL543_13610	PF01367	5'-3' exonuclease, C-terminal SAM fold
AL543_13610	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AL543_13615	PF03641	Possible lysine decarboxylase
AL543_13615	PF11892	Domain of unknown function (DUF3412)
AL543_13615	PF14793	Domain of unknown function (DUF4478)
AL543_13620	PF00990	GGDEF domain
AL543_13630	PF14489	QueF-like protein
AL543_13630	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
AL543_13635	PF07348	Syd protein (SUKH-2)
AL543_13640	PF10071	AL543_13640
AL543_13645	PF03180	NLPA lipoprotein
AL543_13650	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_13655	PF00005	ABC transporter
AL543_13655	PF09383	NIL domain
AL543_13660	PF13242	HAD-hyrolase-like
AL543_13665	PF00356	Bacterial regulatory proteins, lacI family
AL543_13665	PF13377	Periplasmic binding protein-like domain
AL543_13670	PF00367	phosphotransferase system, EIIB
AL543_13670	PF02378	Phosphotransferase system, EIIC
AL543_13675	PF00128	Alpha amylase, catalytic domain
AL543_13680	PF00072	Response regulator receiver domain
AL543_13680	PF00486	Transcriptional regulatory protein, C terminal
AL543_13685	PF00512	His Kinase A (phospho-acceptor) domain
AL543_13685	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_13690	PF11059	AL543_13690
AL543_13715	PF16576	AL543_13715
AL543_13720	PF00873	AcrB/AcrD/AcrF family
AL543_13725	PF01609	Transposase DDE domain
AL543_13730	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AL543_13735	PF02350	UDP-N-acetylglucosamine 2-epimerase
AL543_13740	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
AL543_13740	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
AL543_13740	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
AL543_13750	PF00534	Glycosyl transferases group 1
AL543_13750	PF13439	Glycosyltransferase Family 4
AL543_13755	PF13440	AL543_13755
AL543_13755	PF14667	Polysaccharide biosynthesis C-terminal domain
AL543_13765	PF00132	Bacterial transferase hexapeptide (six repeats)
AL543_13770	PF00501	AMP-binding enzyme
AL543_13775	PF00534	Glycosyl transferases group 1
AL543_13785	PF03808	AL543_13785
AL543_13795	PF12708	Pectate lyase superfamily protein
AL543_13795	PF13229	Right handed beta helix region
AL543_13800	PF16458	AL543_13800
AL543_13805	PF04932	AL543_13805
AL543_13815	PF02397	AL543_13815
AL543_13815	PF13727	CoA-binding domain
AL543_13820	PF10082	AL543_13820
AL543_13825	PF02563	Polysaccharide biosynthesis/export protein
AL543_13825	PF10531	SLBB domain
AL543_13830	PF02706	Chain length determinant protein
AL543_13830	PF13614	AAA domain
AL543_13830	PF13807	AL543_13830
AL543_13845	PF02588	AL543_13845
AL543_13850	PF00464	Serine hydroxymethyltransferase
AL543_13860	PF04055	Radical SAM superfamily
AL543_13860	PF16881	AL543_13860
AL543_13865	PF03099	Biotin/lipoate A/B protein ligase family
AL543_13870	PF04359	Protein of unknown function (DUF493)
AL543_13875	PF00768	D-alanyl-D-alanine carboxypeptidase
AL543_13875	PF07943	Penicillin-binding protein 5, C-terminal domain
AL543_13880	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
AL543_13880	PF05036	Sporulation related domain
AL543_13885	PF01098	AL543_13885
AL543_13890	PF00905	Penicillin binding protein transpeptidase domain
AL543_13890	PF03717	Penicillin-binding Protein dimerisation domain
AL543_13895	PF02590	Predicted SPOUT methyltransferase
AL543_13900	PF02410	Oligomerisation domain
AL543_13905	PF06144	DNA polymerase III, delta subunit
AL543_13905	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
AL543_13910	PF04390	Lipopolysaccharide-assembly
AL543_13915	PF00133	tRNA synthetases class I (I, L, M and V)
AL543_13915	PF08264	Anticodon-binding domain of tRNA
AL543_13915	PF13603	Leucyl-tRNA synthetase, Domain 2
AL543_13920	PF07295	AL543_13920
AL543_13925	PF00795	Carbon-nitrogen hydrolase
AL543_13930	PF00571	CBS domain
AL543_13930	PF03471	Transporter associated domain
AL543_13935	PF02130	Uncharacterized protein family UPF0054
AL543_13940	PF02562	PhoH-like protein
AL543_13945	PF00919	Uncharacterized protein family UPF0004
AL543_13945	PF01938	TRAM domain
AL543_13945	PF04055	Radical SAM superfamily
AL543_13950	PF01494	FAD binding domain
AL543_13955	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
AL543_13960	PF00391	PEP-utilising enzyme, mobile domain
AL543_13960	PF02896	PEP-utilising enzyme, TIM barrel domain
AL543_13960	PF05524	PEP-utilising enzyme, N-terminal
AL543_13965	PF00381	PTS HPr component phosphorylation site
AL543_13975	PF00291	Pyridoxal-phosphate dependent enzyme
AL543_13980	PF07264	Etoposide-induced protein 2
AL543_13985	PF04354	ZipA, C-terminal FtsZ-binding domain
AL543_13990	PF00533	BRCA1 C Terminus (BRCT) domain
AL543_13990	PF01653	NAD-dependent DNA ligase adenylation domain
AL543_13990	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
AL543_13990	PF03120	NAD-dependent DNA ligase OB-fold domain
AL543_13990	PF12826	Helix-hairpin-helix motif
AL543_13990	PF14520	Helix-hairpin-helix domain
AL543_13995	PF13609	Gram-negative porin
AL543_14000	PF09829	AL543_14000
AL543_14005	PF00376	MerR family regulatory protein
AL543_14005	PF09278	MerR, DNA binding
AL543_14010	PF01609	Transposase DDE domain
AL543_14010	PF13006	AL543_14010
AL543_14015	PF01957	NfeD-like C-terminal, partner-binding
AL543_14020	PF01145	SPFH domain / Band 7 family
AL543_14020	PF16200	AL543_14020
AL543_14025	PF00085	Thioredoxin
AL543_14025	PF14559	Tetratricopeptide repeat
AL543_14025	PF14561	Tetratricopeptide repeat
AL543_14030	PF00106	short chain dehydrogenase
AL543_14035	PF01370	NAD dependent epimerase/dehydratase family
AL543_14035	PF08338	Domain of unknown function (DUF1731)
AL543_14040	PF12850	Calcineurin-like phosphoesterase superfamily domain
AL543_14045	PF10262	Rdx family
AL543_14050	PF17323	AL543_14050
AL543_14055	PF00486	Transcriptional regulatory protein, C terminal
AL543_14060	PF00183	Hsp90 protein
AL543_14060	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_14065	PF00406	Adenylate kinase
AL543_14065	PF05191	Adenylate kinase, active site lid
AL543_14070	PF00762	Ferrochelatase
AL543_14075	PF00854	POT family
AL543_14080	PF02357	Transcription termination factor nusG
AL543_14085	PF00733	Asparagine synthase
AL543_14085	PF13537	Glutamine amidotransferase domain
AL543_14090	PF00999	Sodium/hydrogen exchanger family
AL543_14090	PF02254	TrkA-N domain
AL543_14095	PF00480	ROK family
AL543_14100	PF01979	Amidohydrolase family
AL543_14105	PF00367	phosphotransferase system, EIIB
AL543_14105	PF02378	Phosphotransferase system, EIIC
AL543_14110	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AL543_14110	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
AL543_14120	PF01416	tRNA pseudouridine synthase
AL543_14125	PF01039	Carboxyl transferase domain
AL543_14130	PF02875	Mur ligase family, glutamate ligase domain
AL543_14130	PF08245	Mur ligase middle domain
AL543_14135	PF05036	Sporulation related domain
AL543_14140	PF02674	AL543_14140
AL543_14145	PF13522	Glutamine amidotransferase domain
AL543_14150	PF03553	AL543_14150
AL543_14150	PF13726	AL543_14150
AL543_14155	PF00929	Exonuclease
AL543_14160	PF00691	OmpA family
AL543_14165	PF10952	AL543_14165
AL543_14170	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL543_14175	PF00633	Helix-hairpin-helix motif
AL543_14175	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL543_14175	PF10576	Iron-sulfur binding domain of endonuclease III
AL543_14180	PF02508	AL543_14180
AL543_14185	PF04205	FMN-binding domain
AL543_14190	PF03116	AL543_14190
AL543_14195	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
AL543_14195	PF10531	SLBB domain
AL543_14195	PF12838	4Fe-4S dicluster domain
AL543_14195	PF13375	RnfC Barrel sandwich hybrid domain
AL543_14200	PF04060	Putative Fe-S cluster
AL543_14200	PF14697	4Fe-4S dicluster domain
AL543_14205	PF02508	AL543_14205
AL543_14210	PF01797	Transposase IS200 like
AL543_14220	PF00271	Helicase conserved C-terminal domain
AL543_14220	PF02151	UvrB/uvrC motif
AL543_14220	PF04851	Type III restriction enzyme, res subunit
AL543_14220	PF12344	Ultra-violet resistance protein B
AL543_14225	PF00072	Response regulator receiver domain
AL543_14225	PF00158	Sigma-54 interaction domain
AL543_14225	PF02954	Bacterial regulatory protein, Fis family
AL543_14230	PF01627	Hpt domain
AL543_14235	PF01933	Uncharacterised protein family UPF0052
AL543_14240	PF04055	Radical SAM superfamily
AL543_14240	PF06463	Molybdenum Cofactor Synthesis C
AL543_14240	PF13353	4Fe-4S single cluster domain
AL543_14245	PF00994	Probable molybdopterin binding domain
AL543_14250	PF01967	MoaC family
AL543_14255	PF02597	ThiS family
AL543_14260	PF02391	MoaE protein
AL543_14275	PF00571	CBS domain
AL543_14280	PF00122	E1-E2 ATPase
AL543_14280	PF00403	Heavy-metal-associated domain
AL543_14280	PF00702	haloacid dehalogenase-like hydrolase
AL543_14285	PF13358	DDE superfamily endonuclease
AL543_14285	PF13551	Winged helix-turn helix
AL543_14285	PF13592	AL543_14285
AL543_14290	PF01048	Phosphorylase superfamily
AL543_14300	PF01588	Putative tRNA binding domain
AL543_14300	PF09334	tRNA synthetases class I (M)
AL543_14305	PF10609	ParA/MinD ATPase like
AL543_14310	PF00485	Phosphoribulokinase / Uridine kinase family
AL543_14315	PF05170	AL543_14315
AL543_14320	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
AL543_14320	PF12557	Cob(I)alamin adenosyltransferase N terminal
AL543_14325	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AL543_14330	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL543_14335	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL543_14340	PF11859	AL543_14340
AL543_14345	PF04542	Sigma-70 region 2
AL543_14345	PF08281	Sigma-70, region 4
AL543_14350	PF00108	Thiolase, N-terminal domain
AL543_14350	PF02803	Thiolase, C-terminal domain
AL543_14355	PF00378	Enoyl-CoA hydratase/isomerase family
AL543_14355	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AL543_14355	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AL543_14360	PF00881	Nitroreductase family
AL543_14365	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_14365	PF03466	LysR substrate binding domain
AL543_14370	PF00072	Response regulator receiver domain
AL543_14380	PF04304	AL543_14380
AL543_14385	PF00156	Phosphoribosyl transferase domain
AL543_14390	PF12168	AL543_14390
AL543_14390	PF12169	DNA polymerase III subunits gamma and tau domain III
AL543_14390	PF12170	DNA polymerase III tau subunit V interacting with alpha
AL543_14390	PF13177	DNA polymerase III, delta subunit
AL543_14395	PF02575	YbaB/EbfC DNA-binding family
AL543_14400	PF02132	RecR protein
AL543_14400	PF13662	Toprim domain
AL543_14405	PF03692	AL543_14405
AL543_14410	PF03692	AL543_14410
AL543_14415	PF00106	short chain dehydrogenase
AL543_14420	PF01343	Peptidase family S49
AL543_14420	PF08496	AL543_14420
AL543_14425	PF00291	Pyridoxal-phosphate dependent enzyme
AL543_14430	PF01037	AsnC family
AL543_14430	PF13412	Winged helix-turn-helix DNA-binding
AL543_14435	PF13622	Thioesterase-like superfamily
AL543_14440	PF09619	Type III secretion system lipoprotein chaperone (YscW)
AL543_14445	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AL543_14455	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL543_14455	PF00990	GGDEF domain
AL543_14475	PF12833	Helix-turn-helix domain
AL543_14475	PF12852	Cupin
AL543_14485	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_14490	PF00593	TonB dependent receptor
AL543_14490	PF07715	TonB-dependent Receptor Plug Domain
AL543_14495	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
AL543_14500	PF04183	IucA / IucC family
AL543_14500	PF06276	Ferric iron reductase FhuF-like transporter
AL543_14505	PF13523	Acetyltransferase (GNAT) domain
AL543_14510	PF04183	IucA / IucC family
AL543_14510	PF06276	Ferric iron reductase FhuF-like transporter
AL543_14515	PF01032	FecCD transport family
AL543_14520	PF01497	Periplasmic binding protein
AL543_14525	PF00005	ABC transporter
AL543_14530	PF07690	Major Facilitator Superfamily
AL543_14540	PF12802	MarR family
AL543_14545	PF00501	AMP-binding enzyme
AL543_14545	PF13193	AMP-binding enzyme C-terminal domain
AL543_14550	PF00550	Phosphopantetheine attachment site
AL543_14555	PF06339	AL543_14555
AL543_14560	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL543_14560	PF01841	Transglutaminase-like superfamily
AL543_14560	PF02770	Acyl-CoA dehydrogenase, middle domain
AL543_14560	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL543_14565	PF01323	DSBA-like thioredoxin domain
AL543_14570	PF00893	Small Multidrug Resistance protein
AL543_14575	PF00893	Small Multidrug Resistance protein
AL543_14580	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL543_14590	PF01022	Bacterial regulatory protein, arsR family
AL543_14595	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL543_14595	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL543_14600	PF00782	Dual specificity phosphatase, catalytic domain
AL543_14605	PF07690	Major Facilitator Superfamily
AL543_14610	PF00455	AL543_14610
AL543_14610	PF08220	DeoR-like helix-turn-helix domain
AL543_14615	PF00455	AL543_14615
AL543_14615	PF08220	DeoR-like helix-turn-helix domain
AL543_14620	PF08013	Tagatose 6 phosphate kinase
AL543_14625	PF01380	SIS domain
AL543_14630	PF03830	PTS system sorbose subfamily IIB component
AL543_14635	PF03609	AL543_14635
AL543_14640	PF03613	AL543_14640
AL543_14645	PF03610	PTS system fructose IIA component
AL543_14650	PF01979	Amidohydrolase family
AL543_14655	PF01116	Fructose-bisphosphate aldolase class-II
AL543_14660	PF01609	Transposase DDE domain
AL543_14665	PF13358	DDE superfamily endonuclease
AL543_14665	PF13384	Homeodomain-like domain
AL543_14665	PF13592	AL543_14665
AL543_14680	PF00704	Glycosyl hydrolases family 18
AL543_14680	PF06483	AL543_14680
AL543_14680	PF14600	Cellulose-binding domain
AL543_14685	PF02517	CAAX protease self-immunity
AL543_14690	PF01161	Phosphatidylethanolamine-binding protein
AL543_14695	PF12833	Helix-turn-helix domain
AL543_14710	PF01300	Telomere recombination
AL543_14710	PF03481	Putative GTP-binding controlling metal-binding
AL543_14715	PF01627	Hpt domain
AL543_14720	PF00072	Response regulator receiver domain
AL543_14720	PF08668	HDOD domain
AL543_14725	PF00072	Response regulator receiver domain
AL543_14730	PF04509	CheC-like family
AL543_14735	PF00512	His Kinase A (phospho-acceptor) domain
AL543_14735	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_14735	PF08448	PAS fold
AL543_14740	PF00512	His Kinase A (phospho-acceptor) domain
AL543_14740	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_14745	PF00072	Response regulator receiver domain
AL543_14745	PF00563	EAL domain
AL543_14750	PF00072	Response regulator receiver domain
AL543_14750	PF13487	HD domain
AL543_14755	PF00672	HAMP domain
AL543_14755	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_14760	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
AL543_14765	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL543_14770	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_14775	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_14775	PF12911	AL543_14775
AL543_14780	PF00005	ABC transporter
AL543_14780	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL543_14785	PF00005	ABC transporter
AL543_14785	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL543_14790	PF13409	Glutathione S-transferase, N-terminal domain
AL543_14790	PF13410	Glutathione S-transferase, C-terminal domain
AL543_14795	PF01515	Phosphate acetyl/butaryl transferase
AL543_14795	PF07085	DRTGG domain
AL543_14795	PF13500	AAA domain
AL543_14800	PF00871	Acetokinase family
AL543_14805	PF04217	AL543_14805
AL543_14810	PF09905	Uncharacterized conserved protein (DUF2132)
AL543_14815	PF04392	ABC transporter substrate binding protein
AL543_14820	PF02653	AL543_14820
AL543_14825	PF00005	ABC transporter
AL543_14830	PF00990	GGDEF domain
AL543_14835	PF01207	Dihydrouridine synthase (Dus)
AL543_14840	PF02810	SEC-C motif
AL543_14840	PF03695	Uncharacterised protein family (UPF0149)
AL543_14845	PF03548	Outer membrane lipoprotein carrier protein LolA
AL543_14850	PF00004	ATPase family associated with various cellular activities (AAA)
AL543_14850	PF12002	MgsA AAA+ ATPase C terminal
AL543_14850	PF16193	AL543_14850
AL543_14855	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL543_14855	PF02403	Seryl-tRNA synthetase N-terminal domain
AL543_14860	PF00202	Aminotransferase class-III
AL543_14865	PF04055	Radical SAM superfamily
AL543_14865	PF06968	Biotin and Thiamin Synthesis associated domain
AL543_14870	PF00155	Aminotransferase class I and II
AL543_14875	PF08241	Methyltransferase domain
AL543_14880	PF13500	AAA domain
AL543_14890	PF01435	Peptidase family M48
AL543_14895	PF12680	SnoaL-like domain
AL543_14900	PF00106	short chain dehydrogenase
AL543_14905	PF01593	Flavin containing amine oxidoreductase
AL543_14910	PF07103	AL543_14910
AL543_14915	PF02353	Mycolic acid cyclopropane synthetase
AL543_14920	PF11086	AL543_14920
AL543_14925	PF16036	AL543_14925
AL543_14935	PF00206	Lyase
AL543_14935	PF08328	Adenylosuccinate lyase C-terminal
AL543_14940	PF04356	Protein of unknown function (DUF489)
AL543_14945	PF03054	tRNA methyl transferase
AL543_14950	PF00294	pfkB family carbohydrate kinase
AL543_14955	PF00816	H-NS histone family
AL543_14960	PF03553	AL543_14960
AL543_14965	PF01634	ATP phosphoribosyltransferase
AL543_14965	PF08029	HisG, C-terminal domain
AL543_14970	PF00815	Histidinol dehydrogenase
AL543_14975	PF00155	Aminotransferase class I and II
AL543_14980	PF00475	Imidazoleglycerol-phosphate dehydratase
AL543_14980	PF08645	Polynucleotide kinase 3 phosphatase
AL543_14985	PF00117	Glutamine amidotransferase class-I
AL543_14990	PF00977	Histidine biosynthesis protein
AL543_14995	PF00977	Histidine biosynthesis protein
AL543_15000	PF01502	Phosphoribosyl-AMP cyclohydrolase
AL543_15000	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
AL543_15005	PF00849	RNA pseudouridylate synthase
AL543_15010	PF03971	Monomeric isocitrate dehydrogenase
AL543_15015	PF00313	'Cold-shock' DNA-binding domain
AL543_15020	PF02617	ATP-dependent Clp protease adaptor protein ClpS
AL543_15025	PF00004	ATPase family associated with various cellular activities (AAA)
AL543_15025	PF02861	Clp amino terminal domain
AL543_15025	PF07724	AAA domain (Cdc48 subfamily)
AL543_15025	PF10431	C-terminal, D2-small domain, of ClpB protein
AL543_15030	PF02080	TrkA-C domain
AL543_15030	PF06826	AL543_15030
AL543_15035	PF00462	Glutaredoxin
AL543_15045	PF00465	Iron-containing alcohol dehydrogenase
AL543_15050	PF01380	SIS domain
AL543_15050	PF01418	Helix-turn-helix domain, rpiR family
AL543_15055	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AL543_15065	PF03956	AL543_15065
AL543_15070	PF08668	HDOD domain
AL543_15075	PF04993	TfoX N-terminal domain
AL543_15075	PF04994	TfoX C-terminal domain
AL543_15090	PF00072	Response regulator receiver domain
AL543_15095	PF00027	Cyclic nucleotide-binding domain
AL543_15095	PF00512	His Kinase A (phospho-acceptor) domain
AL543_15095	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_15100	PF06097	AL543_15100
AL543_15105	PF01609	Transposase DDE domain
AL543_15105	PF13006	AL543_15105
AL543_15110	PF00266	Aminotransferase class-V
AL543_15115	PF14397	AL543_15115
AL543_15120	PF14400	AL543_15120
AL543_15120	PF14402	AL543_15120
AL543_15125	PF05618	Putative ATP-dependant zinc protease
AL543_15130	PF08003	Protein of unknown function (DUF1698)
AL543_15135	PF13649	Methyltransferase domain
AL543_15140	PF01904	Protein of unknown function DUF72
AL543_15145	PF00152	tRNA synthetases class II (D, K and N)
AL543_15145	PF01336	OB-fold nucleic acid binding domain
AL543_15145	PF02938	GAD domain
AL543_15150	PF00265	Thymidine kinase
AL543_15155	PF00375	Sodium:dicarboxylate symporter family
AL543_15160	PF00290	Tryptophan synthase alpha chain
AL543_15165	PF00291	Pyridoxal-phosphate dependent enzyme
AL543_15170	PF00218	Indole-3-glycerol phosphate synthase
AL543_15170	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
AL543_15175	PF00591	Glycosyl transferase family, a/b domain
AL543_15175	PF02885	Glycosyl transferase family, helical bundle domain
AL543_15180	PF00117	Glutamine amidotransferase class-I
AL543_15185	PF00425	chorismate binding enzyme
AL543_15185	PF04715	Anthranilate synthase component I, N terminal region
AL543_15190	PF08056	AL543_15190
AL543_15195	PF02811	PHP domain
AL543_15200	PF01300	Telomere recombination
AL543_15205	PF00849	RNA pseudouridylate synthase
AL543_15205	PF01479	S4 domain
AL543_15210	PF00005	ABC transporter
AL543_15215	PF00005	ABC transporter
AL543_15215	PF00664	ABC transporter transmembrane region
AL543_15220	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL543_15225	PF10014	2OG-Fe dioxygenase
AL543_15230	PF00266	Aminotransferase class-V
AL543_15235	PF00990	GGDEF domain
AL543_15240	PF02698	DUF218 domain
AL543_15245	PF11872	AL543_15245
AL543_15250	PF00390	Malic enzyme, N-terminal domain
AL543_15250	PF03949	Malic enzyme, NAD binding domain
AL543_15260	PF01259	SAICAR synthetase
AL543_15275	PF08238	Sel1 repeat
AL543_15280	PF00691	OmpA family
AL543_15280	PF13488	AL543_15280
AL543_15285	PF10979	AL543_15285
AL543_15290	PF11813	AL543_15290
AL543_15295	PF01565	FAD binding domain
AL543_15295	PF02913	FAD linked oxidases, C-terminal domain
AL543_15295	PF13183	4Fe-4S dicluster domain
AL543_15300	PF04191	Phospholipid methyltransferase
AL543_15305	PF00089	Trypsin
AL543_15310	PF12119	AL543_15310
AL543_15315	PF00221	Aromatic amino acid lyase
AL543_15320	PF01175	Urocanase
AL543_15320	PF17391	AL543_15320
AL543_15320	PF17392	AL543_15320
AL543_15325	PF00491	Arginase family
AL543_15330	PF01979	Amidohydrolase family
AL543_15335	PF00392	Bacterial regulatory proteins, gntR family
AL543_15335	PF07702	UTRA domain
AL543_15340	PF11383	AL543_15340
AL543_15345	PF04269	Protein of unknown function, DUF440
AL543_15350	PF01132	Elongation factor P (EF-P) OB domain
AL543_15350	PF08207	Elongation factor P (EF-P) KOW-like domain
AL543_15350	PF09285	Elongation factor P, C-terminal
AL543_15355	PF01909	Nucleotidyltransferase domain
AL543_15360	PF00563	EAL domain
AL543_15360	PF02378	Phosphotransferase system, EIIC
AL543_15365	PF00136	DNA polymerase family B
AL543_15365	PF03104	DNA polymerase family B, exonuclease domain
AL543_15370	PF00072	Response regulator receiver domain
AL543_15370	PF00196	Bacterial regulatory proteins, luxR family
AL543_15375	PF01541	GIY-YIG catalytic domain
AL543_15375	PF02151	UvrB/uvrC motif
AL543_15375	PF08459	UvrC Helix-hairpin-helix N-terminal
AL543_15375	PF14520	Helix-hairpin-helix domain
AL543_15380	PF01066	CDP-alcohol phosphatidyltransferase
AL543_15405	PF01797	Transposase IS200 like
AL543_15410	PF13358	DDE superfamily endonuclease
AL543_15410	PF13551	Winged helix-turn helix
AL543_15410	PF13592	AL543_15410
AL543_15420	PF00583	Acetyltransferase (GNAT) family
AL543_15425	PF01409	tRNA synthetases class II core domain (F)
AL543_15425	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
AL543_15430	PF01588	Putative tRNA binding domain
AL543_15430	PF03147	Ferredoxin-fold anticodon binding domain
AL543_15430	PF03483	B3/4 domain
AL543_15430	PF03484	tRNA synthetase B5 domain
AL543_15435	PF00216	Bacterial DNA-binding protein
AL543_15445	PF04607	Region found in RelA / SpoT proteins
AL543_15455	PF05724	Thiopurine S-methyltransferase (TPMT)
AL543_15460	PF02222	ATP-grasp domain
AL543_15465	PF03547	AL543_15465
AL543_15470	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL543_15470	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
AL543_15475	PF04172	AL543_15475
AL543_15480	PF03788	AL543_15480
AL543_15485	PF00929	Exonuclease
AL543_15485	PF08411	Exonuclease C-terminal
AL543_15490	PF00375	Sodium:dicarboxylate symporter family
AL543_15495	PF01641	SelR domain
AL543_15500	PF02277	Phosphoribosyltransferase
AL543_15505	PF02654	AL543_15505
AL543_15510	PF02283	Cobinamide kinase / cobinamide phosphate guanyltransferase
AL543_15515	PF00300	Histidine phosphatase superfamily (branch 1)
AL543_15520	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL543_15525	PF01032	FecCD transport family
AL543_15530	PF00005	ABC transporter
AL543_15535	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
AL543_15540	PF11042	AL543_15540
AL543_15545	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_15545	PF00672	HAMP domain
AL543_15545	PF17200	AL543_15545
AL543_15550	PF13740	ACT domain
AL543_15555	PF13084	AL543_15555
AL543_15560	PF00994	Probable molybdopterin binding domain
AL543_15570	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL543_15575	PF00268	Ribonucleotide reductase, small chain
AL543_15580	PF00317	Ribonucleotide reductase, all-alpha domain
AL543_15580	PF02867	Ribonucleotide reductase, barrel domain
AL543_15580	PF03477	ATP cone domain
AL543_15585	PF13489	Methyltransferase domain
AL543_15590	PF00521	DNA gyrase/topoisomerase IV, subunit A
AL543_15590	PF03989	DNA gyrase C-terminal domain, beta-propeller
AL543_15600	PF02335	Cytochrome c552
AL543_15605	PF09699	Doubled CXXCH motif (Paired_CXXCH_1)
AL543_15610	PF13247	4Fe-4S dicluster domain
AL543_15615	PF03916	AL543_15615
AL543_15620	PF01578	AL543_15620
AL543_15620	PF16327	AL543_15620
AL543_15625	PF08534	Redoxin
AL543_15630	PF03918	Cytochrome C biogenesis protein
AL543_15640	PF00313	'Cold-shock' DNA-binding domain
AL543_15645	PF00581	Rhodanese-like domain
AL543_15650	PF12833	Helix-turn-helix domain
AL543_15670	PF00925	GTP cyclohydrolase II
AL543_15675	PF09375	Imelysin
AL543_15680	PF06537	AL543_15680
AL543_15685	PF09375	Imelysin
AL543_15690	PF07433	AL543_15690
AL543_15695	PF01471	Putative peptidoglycan binding domain
AL543_15695	PF03734	L,D-transpeptidase catalytic domain
AL543_15700	PF05951	AL543_15700
AL543_15705	PF00753	Metallo-beta-lactamase superfamily
AL543_15710	PF11201	AL543_15710
AL543_15720	PF03480	Bacterial extracellular solute-binding protein, family 7
AL543_15725	PF04290	AL543_15725
AL543_15730	PF06808	AL543_15730
AL543_15735	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_15735	PF07730	Histidine kinase
AL543_15735	PF17200	AL543_15735
AL543_15740	PF00072	Response regulator receiver domain
AL543_15740	PF00196	Bacterial regulatory proteins, luxR family
AL543_15745	PF01047	MarR family
AL543_15750	PF02028	BCCT family transporter
AL543_15755	PF01522	Polysaccharide deacetylase
AL543_15760	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL543_15765	PF02378	Phosphotransferase system, EIIC
AL543_15770	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
AL543_15775	PF02056	Family 4 glycosyl hydrolase
AL543_15775	PF11975	Family 4 glycosyl hydrolase C-terminal domain
AL543_15780	PF04794	YdjC-like protein
AL543_15785	PF00356	Bacterial regulatory proteins, lacI family
AL543_15785	PF13377	Periplasmic binding protein-like domain
AL543_15790	PF13506	Glycosyl transferase family 21
AL543_15795	PF04349	Periplasmic glucan biosynthesis protein, MdoG
AL543_15800	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_15800	PF00672	HAMP domain
AL543_15800	PF02743	Cache domain
AL543_15805	PF00929	Exonuclease
AL543_15810	PF00027	Cyclic nucleotide-binding domain
AL543_15810	PF00571	CBS domain
AL543_15810	PF03445	AL543_15810
AL543_15810	PF10335	AL543_15810
AL543_15815	PF00155	Aminotransferase class I and II
AL543_15820	PF01966	HD domain
AL543_15825	PF00132	Bacterial transferase hexapeptide (six repeats)
AL543_15830	PF08543	Phosphomethylpyrimidine kinase
AL543_15835	PF00152	tRNA synthetases class II (D, K and N)
AL543_15835	PF01336	OB-fold nucleic acid binding domain
AL543_15840	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_15845	PF01242	6-pyruvoyl tetrahydropterin synthase
AL543_15850	PF03313	AL543_15850
AL543_15850	PF03315	Serine dehydratase beta chain
AL543_15855	PF03222	Tryptophan/tyrosine permease family
AL543_15860	PF00293	NUDIX domain
AL543_15865	PF00425	chorismate binding enzyme
AL543_15865	PF04715	Anthranilate synthase component I, N terminal region
AL543_15870	PF05681	AL543_15870
AL543_15870	PF05683	Fumarase C-terminus
AL543_15880	PF04317	AL543_15880
AL543_15885	PF05128	AL543_15885
AL543_15890	PF00158	Sigma-54 interaction domain
AL543_15890	PF00989	PAS fold
AL543_15895	PF13302	Acetyltransferase (GNAT) domain
AL543_15900	PF13023	HD domain
AL543_15905	PF11163	AL543_15905
AL543_15910	PF00892	EamA-like transporter family
AL543_15915	PF00842	Alanine racemase, C-terminal domain
AL543_15915	PF01168	Alanine racemase, N-terminal domain
AL543_15920	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_15920	PF12729	AL543_15920
AL543_15925	PF00939	Sodium:sulfate symporter transmembrane region
AL543_15930	PF00027	Cyclic nucleotide-binding domain
AL543_15930	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_15935	PF00072	Response regulator receiver domain
AL543_15940	PF04393	AL543_15940
AL543_15945	PF06629	AL543_15945
AL543_15950	PF00512	His Kinase A (phospho-acceptor) domain
AL543_15950	PF00672	HAMP domain
AL543_15950	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_15955	PF00072	Response regulator receiver domain
AL543_15955	PF00486	Transcriptional regulatory protein, C terminal
AL543_15960	PF00912	Transglycosylase
AL543_15965	PF04400	AL543_15965
AL543_15970	PF02579	Dinitrogenase iron-molybdenum cofactor
AL543_15975	PF13358	DDE superfamily endonuclease
AL543_15975	PF13384	Homeodomain-like domain
AL543_15975	PF13592	AL543_15975
AL543_15985	PF13407	Periplasmic binding protein domain
AL543_15990	PF00005	ABC transporter
AL543_15995	PF02653	AL543_15995
AL543_16010	PF01970	AL543_16010
AL543_16015	PF07331	AL543_16015
AL543_16020	PF03401	Tripartite tricarboxylate transporter family receptor
AL543_16030	PF00392	Bacterial regulatory proteins, gntR family
AL543_16030	PF07729	FCD domain
AL543_16035	PF13714	Phosphoenolpyruvate phosphomutase
AL543_16040	PF00285	Citrate synthase
AL543_16045	PF00330	Aconitase family (aconitate hydratase)
AL543_16045	PF00694	Aconitase C-terminal domain
AL543_16050	PF04303	PrpF protein
AL543_16055	PF00501	AMP-binding enzyme
AL543_16055	PF13193	AMP-binding enzyme C-terminal domain
AL543_16055	PF16177	AL543_16055
AL543_16060	PF00583	Acetyltransferase (GNAT) family
AL543_16065	PF00293	NUDIX domain
AL543_16070	PF01546	Peptidase family M20/M25/M40
AL543_16070	PF07687	Peptidase dimerisation domain
AL543_16075	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL543_16075	PF14696	Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal
AL543_16080	PF04209	homogentisate 1,2-dioxygenase
AL543_16085	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AL543_16090	PF13417	Glutathione S-transferase, N-terminal domain
AL543_16090	PF14497	Glutathione S-transferase, C-terminal domain
AL543_16095	PF00072	Response regulator receiver domain
AL543_16095	PF13487	HD domain
AL543_16100	PF00072	Response regulator receiver domain
AL543_16100	PF00512	His Kinase A (phospho-acceptor) domain
AL543_16100	PF01627	Hpt domain
AL543_16100	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_16100	PF08448	PAS fold
AL543_16105	PF08534	Redoxin
AL543_16110	PF13358	DDE superfamily endonuclease
AL543_16110	PF13551	Winged helix-turn helix
AL543_16110	PF13592	AL543_16110
AL543_16115	PF00990	GGDEF domain
AL543_16115	PF07494	Two component regulator propeller
AL543_16115	PF07495	Y_Y_Y domain
AL543_16120	PF10672	S-adenosylmethionine-dependent methyltransferase
AL543_16125	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_16130	PF00708	Acylphosphatase
AL543_16135	PF04358	DsrC like protein
AL543_16140	PF01027	Inhibitor of apoptosis-promoting Bax1
AL543_16145	PF00005	ABC transporter
AL543_16150	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_16155	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_16160	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL543_16165	PF10414	Sirohaem synthase dimerisation region
AL543_16165	PF13241	Putative NAD(P)-binding
AL543_16170	PF08282	haloacid dehalogenase-like hydrolase
AL543_16175	PF04055	Radical SAM superfamily
AL543_16175	PF13394	4Fe-4S single cluster domain
AL543_16180	PF06508	Queuosine biosynthesis protein QueC
AL543_16185	PF00990	GGDEF domain
AL543_16185	PF13181	Tetratricopeptide repeat
AL543_16185	PF13424	Tetratricopeptide repeat
AL543_16195	PF09084	NMT1/THI5 like
AL543_16200	PF00990	GGDEF domain
AL543_16210	PF00990	GGDEF domain
AL543_16215	PF00012	Hsp70 protein
AL543_16215	PF12531	AL543_16215
AL543_16220	PF00012	Hsp70 protein
AL543_16225	PF10816	AL543_16225
AL543_16230	PF00990	GGDEF domain
AL543_16230	PF03924	CHASE domain
AL543_16235	PF00929	Exonuclease
AL543_16245	PF05099	Tellurite resistance protein TerB
AL543_16260	PF00270	DEAD/DEAH box helicase
AL543_16260	PF00271	Helicase conserved C-terminal domain
AL543_16260	PF04408	Helicase associated domain (HA2)
AL543_16260	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
AL543_16260	PF11898	AL543_16260
AL543_16265	PF13505	Outer membrane protein beta-barrel domain
AL543_16270	PF03738	Glutathionylspermidine synthase preATP-grasp
AL543_16275	PF06693	AL543_16275
AL543_16280	PF03994	AL543_16280
AL543_16285	PF13358	DDE superfamily endonuclease
AL543_16285	PF13384	Homeodomain-like domain
AL543_16285	PF13592	AL543_16285
AL543_16290	PF01609	Transposase DDE domain
AL543_16300	PF10013	AL543_16300
AL543_16305	PF01979	Amidohydrolase family
AL543_16310	PF00012	Hsp70 protein
AL543_16315	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_16315	PF03466	LysR substrate binding domain
AL543_16320	PF07690	Major Facilitator Superfamily
AL543_16325	PF00893	Small Multidrug Resistance protein
AL543_16330	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_16330	PF00672	HAMP domain
AL543_16335	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_16335	PF08447	PAS fold
AL543_16335	PF08448	PAS fold
AL543_16340	PF00270	DEAD/DEAH box helicase
AL543_16340	PF00271	Helicase conserved C-terminal domain
AL543_16345	PF12833	Helix-turn-helix domain
AL543_16350	PF02423	Ornithine cyclodeaminase/mu-crystallin family
AL543_16355	PF01042	Endoribonuclease L-PSP
AL543_16360	PF01266	FAD dependent oxidoreductase
AL543_16365	PF00582	Universal stress protein family
AL543_16370	PF03401	Tripartite tricarboxylate transporter family receptor
AL543_16380	PF01970	AL543_16380
AL543_16385	PF00171	Aldehyde dehydrogenase family
AL543_16390	PF11391	AL543_16390
AL543_16395	PF01613	Flavin reductase like domain
AL543_16400	PF01047	MarR family
AL543_16405	PF06808	AL543_16405
AL543_16410	PF04290	AL543_16410
AL543_16415	PF03480	Bacterial extracellular solute-binding protein, family 7
AL543_16425	PF03328	HpcH/HpaI aldolase/citrate lyase family
AL543_16430	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AL543_16435	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AL543_16440	PF00171	Aldehyde dehydrogenase family
AL543_16445	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
AL543_16450	PF03547	AL543_16450
AL543_16455	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
AL543_16460	PF00171	Aldehyde dehydrogenase family
AL543_16465	PF02311	AraC-like ligand binding domain
AL543_16465	PF12833	Helix-turn-helix domain
AL543_16470	PF08028	Acyl-CoA dehydrogenase, C-terminal domain
AL543_16475	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
AL543_16480	PF05638	Protein of unknown function (DUF796)
AL543_16485	PF05954	Phage late control gene D protein (GPD)
AL543_16490	PF13503	AL543_16490
AL543_16495	PF09994	Uncharacterized alpha/beta hydrolase domain (DUF2235)
AL543_16500	PF11153	AL543_16500
AL543_16505	PF01810	AL543_16505
AL543_16510	PF01235	AL543_16510
AL543_16525	PF00990	GGDEF domain
AL543_16530	PF00072	Response regulator receiver domain
AL543_16530	PF00512	His Kinase A (phospho-acceptor) domain
AL543_16530	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_16530	PF12860	AL543_16530
AL543_16535	PF08495	AL543_16535
AL543_16535	PF10442	AL543_16535
AL543_16540	PF00072	Response regulator receiver domain
AL543_16540	PF00196	Bacterial regulatory proteins, luxR family
AL543_16545	PF00171	Aldehyde dehydrogenase family
AL543_16550	PF13416	Bacterial extracellular solute-binding protein
AL543_16555	PF13416	Bacterial extracellular solute-binding protein
AL543_16560	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_16565	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_16570	PF00005	ABC transporter
AL543_16570	PF08402	TOBE domain
AL543_16575	PF13358	DDE superfamily endonuclease
AL543_16575	PF13551	Winged helix-turn helix
AL543_16575	PF13592	AL543_16575
AL543_16585	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AL543_16590	PF11205	AL543_16590
AL543_16595	PF01171	PP-loop family
AL543_16600	PF00582	Universal stress protein family
AL543_16605	PF00027	Cyclic nucleotide-binding domain
AL543_16605	PF13545	Crp-like helix-turn-helix domain
AL543_16610	PF13386	AL543_16610
AL543_16615	PF03597	AL543_16615
AL543_16620	PF00122	E1-E2 ATPase
AL543_16620	PF00403	Heavy-metal-associated domain
AL543_16620	PF00702	haloacid dehalogenase-like hydrolase
AL543_16620	PF12156	AL543_16620
AL543_16625	PF05751	AL543_16625
AL543_16630	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL543_16630	PF14715	N-terminal domain of cytochrome oxidase-cbb3, FixP
AL543_16635	PF05545	AL543_16635
AL543_16640	PF02433	Cytochrome C oxidase, mono-heme subunit/FixO
AL543_16645	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AL543_16655	PF08495	AL543_16655
AL543_16655	PF10442	AL543_16655
AL543_16660	PF00072	Response regulator receiver domain
AL543_16660	PF00512	His Kinase A (phospho-acceptor) domain
AL543_16660	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_16680	PF12321	AL543_16680
AL543_16685	PF06303	Organiser of macrodomain of Terminus of chromosome
AL543_16685	PF17414	AL543_16685
AL543_16690	PF05362	Lon protease (S16) C-terminal proteolytic domain
AL543_16690	PF13654	AAA domain
AL543_16695	PF07977	FabA-like domain
AL543_16700	PF04957	Ribosome modulation factor
AL543_16705	PF11949	AL543_16705
AL543_16710	PF00005	ABC transporter
AL543_16710	PF12848	ABC transporter
AL543_16710	PF16326	AL543_16710
AL543_16715	PF05768	Glutaredoxin-like domain (DUF836)
AL543_16720	PF01170	Putative RNA methylase family UPF0020
AL543_16720	PF02926	THUMP domain
AL543_16720	PF10672	S-adenosylmethionine-dependent methyltransferase
AL543_16725	PF07126	AL543_16725
AL543_16730	PF01180	Dihydroorotate dehydrogenase
AL543_16735	PF05088	AL543_16735
AL543_16740	PF11197	AL543_16740
AL543_16745	PF01433	Peptidase family M1
AL543_16745	PF11940	Domain of unknown function (DUF3458)
AL543_16745	PF17432	AL543_16745
AL543_16755	PF00595	PDZ domain (Also known as DHR or GLGF)
AL543_16755	PF03572	Peptidase family S41
AL543_16755	PF08180	AL543_16755
AL543_16755	PF11818	AL543_16755
AL543_16760	PF04352	ProQ/FINO family
AL543_16760	PF17516	AL543_16760
AL543_16765	PF13185	GAF domain
AL543_16775	PF04403	AL543_16775
AL543_16780	PF02470	AL543_16780
AL543_16785	PF01189	NOL1/NOP2/sun family
AL543_16785	PF13636	pre-rRNA processing and ribosome biogenesis
AL543_16785	PF17125	AL543_16785
AL543_16790	PF13509	S1 domain
AL543_16800	PF14539	Domain of unknown function (DUF4442)
AL543_16805	PF00793	DAHP synthetase I family
AL543_16810	PF04461	Protein of unknown function (DUF520)
AL543_16815	PF02146	Sir2 family
AL543_16820	PF00909	Ammonium Transporter Family
AL543_16835	PF01292	Prokaryotic cytochrome b561
AL543_16840	PF13247	4Fe-4S dicluster domain
AL543_16845	PF00384	Molybdopterin oxidoreductase
AL543_16845	PF01568	Molydopterin dinucleotide binding domain
AL543_16845	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL543_16850	PF10518	TAT (twin-arginine translocation) pathway signal sequence
AL543_16855	PF02613	Nitrate reductase delta subunit
AL543_16860	PF12838	4Fe-4S dicluster domain
AL543_16860	PF13187	4Fe-4S dicluster domain
AL543_16865	PF11748	AL543_16865
AL543_16870	PF11749	AL543_16870
AL543_16875	PF02634	FdhD/NarQ family
AL543_16880	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_16880	PF00672	HAMP domain
AL543_16885	PF00005	ABC transporter
AL543_16885	PF12848	ABC transporter
AL543_16890	PF00512	His Kinase A (phospho-acceptor) domain
AL543_16890	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_16890	PF17202	AL543_16890
AL543_16895	PF00072	Response regulator receiver domain
AL543_16895	PF00158	Sigma-54 interaction domain
AL543_16895	PF02954	Bacterial regulatory protein, Fis family
AL543_16900	PF12849	PBP superfamily domain
AL543_16905	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_16910	PF00005	ABC transporter
AL543_16915	PF12804	MobA-like NTP transferase domain
AL543_16920	PF00994	Probable molybdopterin binding domain
AL543_16920	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
AL543_16920	PF03453	MoeA N-terminal region (domain I and II)
AL543_16920	PF03454	MoeA C-terminal region (domain IV)
AL543_16925	PF11173	AL543_16925
AL543_16930	PF00480	ROK family
AL543_16935	PF03942	AL543_16935
AL543_16940	PF04116	AL543_16940
AL543_16945	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_16950	PF00877	NlpC/P60 family
AL543_16955	PF12290	AL543_16955
AL543_16960	PF03881	Fructosamine kinase
AL543_16965	PF14255	AL543_16965
AL543_16970	PF01554	MatE
AL543_16975	PF11279	AL543_16975
AL543_16980	PF01068	ATP dependent DNA ligase domain
AL543_16980	PF14743	DNA ligase OB-like domain
AL543_16990	PF03544	Gram-negative bacterial TonB protein C-terminal
AL543_16995	PF02472	Biopolymer transport protein ExbD/TolR
AL543_17000	PF01618	AL543_17000
AL543_17005	PF01618	AL543_17005
AL543_17010	PF11932	AL543_17010
AL543_17020	PF13416	Bacterial extracellular solute-binding protein
AL543_17025	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_17030	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_17035	PF00005	ABC transporter
AL543_17040	PF00455	AL543_17040
AL543_17040	PF08220	DeoR-like helix-turn-helix domain
AL543_17045	PF03009	Glycerophosphoryl diester phosphodiesterase family
AL543_17050	PF04074	Domain of unknown function (DUF386)
AL543_17055	PF01042	Endoribonuclease L-PSP
AL543_17060	PF00356	Bacterial regulatory proteins, lacI family
AL543_17060	PF13377	Periplasmic binding protein-like domain
AL543_17065	PF00232	Glycosyl hydrolase family 1
AL543_17070	PF00141	Peroxidase
AL543_17075	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_17075	PF03466	LysR substrate binding domain
AL543_17080	PF00753	Metallo-beta-lactamase superfamily
AL543_17085	PF16576	AL543_17085
AL543_17090	PF02321	Outer membrane efflux protein
AL543_17095	PF02687	AL543_17095
AL543_17095	PF12704	MacB-like periplasmic core domain
AL543_17100	PF02687	AL543_17100
AL543_17100	PF12704	MacB-like periplasmic core domain
AL543_17105	PF00005	ABC transporter
AL543_17110	PF00268	Ribonucleotide reductase, small chain
AL543_17115	PF00317	Ribonucleotide reductase, all-alpha domain
AL543_17115	PF02867	Ribonucleotide reductase, barrel domain
AL543_17115	PF08343	Ribonucleotide reductase N-terminal
AL543_17120	PF07972	NrdI Flavodoxin like
AL543_17125	PF00462	Glutaredoxin
AL543_17130	PF02657	Fe-S metabolism associated domain
AL543_17135	PF00266	Aminotransferase class-V
AL543_17140	PF01458	Uncharacterized protein family (UPF0051)
AL543_17145	PF00005	ABC transporter
AL543_17150	PF01458	Uncharacterized protein family (UPF0051)
AL543_17155	PF01521	Iron-sulphur cluster biosynthesis
AL543_17165	PF00206	Lyase
AL543_17165	PF10415	Fumarase C C-terminus
AL543_17175	PF04342	AL543_17175
AL543_17180	PF09900	AL543_17180
AL543_17185	PF04266	ASCH domain
AL543_17190	PF00080	Copper/zinc superoxide dismutase (SODC)
AL543_17195	PF12796	Ankyrin repeats (3 copies)
AL543_17200	PF00199	Catalase
AL543_17200	PF06628	Catalase-related immune-responsive
AL543_17205	PF04224	AL543_17205
AL543_17210	PF13322	AL543_17210
AL543_17210	PF13402	Peptidase M60-like family
AL543_17210	PF17291	AL543_17210
AL543_17220	PF01263	Aldose 1-epimerase
AL543_17225	PF00288	GHMP kinases N terminal domain
AL543_17225	PF08544	GHMP kinases C terminal
AL543_17225	PF10509	Galactokinase galactose-binding signature
AL543_17230	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
AL543_17230	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
AL543_17235	PF07690	Major Facilitator Superfamily
AL543_17250	PF00990	GGDEF domain
AL543_17255	PF10881	AL543_17255
AL543_17265	PF00072	Response regulator receiver domain
AL543_17265	PF01584	CheW-like domain
AL543_17270	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL543_17275	PF00072	Response regulator receiver domain
AL543_17275	PF12431	AL543_17275
AL543_17280	PF00989	PAS fold
AL543_17280	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_17280	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
AL543_17280	PF17203	AL543_17280
AL543_17290	PF02321	Outer membrane efflux protein
AL543_17295	PF16576	AL543_17295
AL543_17300	PF12698	ABC-2 family transporter protein
AL543_17305	PF12698	ABC-2 family transporter protein
AL543_17310	PF13671	AAA domain
AL543_17315	PF04204	Homoserine O-succinyltransferase
AL543_17320	PF13424	Tetratricopeptide repeat
AL543_17330	PF05971	Protein of unknown function (DUF890)
AL543_17335	PF01863	Protein of unknown function DUF45
AL543_17340	PF00462	Glutaredoxin
AL543_17345	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_17345	PF03466	LysR substrate binding domain
AL543_17350	PF07690	Major Facilitator Superfamily
AL543_17355	PF07209	AL543_17355
AL543_17360	PF00092	von Willebrand factor type A domain
AL543_17365	PF02321	Outer membrane efflux protein
AL543_17370	PF00691	OmpA family
AL543_17380	PF03435	Saccharopine dehydrogenase
AL543_17380	PF16653	AL543_17380
AL543_17385	PF00202	Aminotransferase class-III
AL543_17385	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AL543_17390	PF13358	DDE superfamily endonuclease
AL543_17390	PF13551	Winged helix-turn helix
AL543_17390	PF13592	AL543_17390
AL543_17395	PF06965	Na+/H+ antiporter 1
AL543_17400	PF07143	Hydroxyneurosporene synthase (CrtC)
AL543_17400	PF17186	AL543_17400
AL543_17405	PF02687	AL543_17405
AL543_17410	PF00005	ABC transporter
AL543_17415	PF01554	MatE
AL543_17420	PF11066	AL543_17420
AL543_17420	PF13460	NADH(P)-binding
AL543_17425	PF11140	AL543_17425
AL543_17430	PF07690	Major Facilitator Superfamily
AL543_17435	PF00849	RNA pseudouridylate synthase
AL543_17435	PF01479	S4 domain
AL543_17440	PF00271	Helicase conserved C-terminal domain
AL543_17440	PF04851	Type III restriction enzyme, res subunit
AL543_17450	PF00072	Response regulator receiver domain
AL543_17450	PF00486	Transcriptional regulatory protein, C terminal
AL543_17455	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_17460	PF01386	Ribosomal L25p family
AL543_17465	PF14312	AL543_17465
AL543_17470	PF00563	EAL domain
AL543_17505	PF16576	AL543_17505
AL543_17510	PF00873	AcrB/AcrD/AcrF family
AL543_17515	PF12614	AL543_17515
AL543_17530	PF11301	AL543_17530
AL543_17535	PF13419	Haloacid dehalogenase-like hydrolase
AL543_17545	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL543_17545	PF12793	AL543_17545
AL543_17550	PF06629	AL543_17550
AL543_17555	PF01752	Collagenase
AL543_17555	PF04151	Bacterial pre-peptidase C-terminal domain
AL543_17555	PF08453	Peptidase family M9 N-terminal
AL543_17560	PF00072	Response regulator receiver domain
AL543_17565	PF00072	Response regulator receiver domain
AL543_17565	PF00196	Bacterial regulatory proteins, luxR family
AL543_17565	PF00563	EAL domain
AL543_17570	PF00072	Response regulator receiver domain
AL543_17570	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL543_17570	PF00512	His Kinase A (phospho-acceptor) domain
AL543_17570	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_17575	PF00571	CBS domain
AL543_17575	PF01769	Divalent cation transporter
AL543_17580	PF00892	EamA-like transporter family
AL543_17585	PF03222	Tryptophan/tyrosine permease family
AL543_17590	PF13437	HlyD family secretion protein
AL543_17595	PF00005	ABC transporter
AL543_17600	PF12698	ABC-2 family transporter protein
AL543_17610	PF06945	AL543_17610
AL543_17615	PF03724	META domain
AL543_17620	PF13416	Bacterial extracellular solute-binding protein
AL543_17625	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_17630	PF00005	ABC transporter
AL543_17635	PF01066	CDP-alcohol phosphatidyltransferase
AL543_17640	PF00849	RNA pseudouridylate synthase
AL543_17645	PF00209	Sodium:neurotransmitter symporter family
AL543_17650	PF13091	PLD-like domain
AL543_17650	PF13396	AL543_17650
AL543_17655	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL543_17660	PF03352	Methyladenine glycosylase
AL543_17665	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AL543_17665	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
AL543_17670	PF04024	AL543_17670
AL543_17675	PF06667	AL543_17675
AL543_17680	PF04012	AL543_17680
AL543_17685	PF00158	Sigma-54 interaction domain
AL543_17685	PF02954	Bacterial regulatory protein, Fis family
AL543_17690	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL543_17695	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_17700	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_17700	PF12911	AL543_17700
AL543_17705	PF00005	ABC transporter
AL543_17705	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL543_17710	PF00005	ABC transporter
AL543_17715	PF11150	AL543_17715
AL543_17720	PF11042	AL543_17720
AL543_17725	PF01368	DHH family
AL543_17725	PF02833	DHHA2 domain
AL543_17730	PF11449	AL543_17730
AL543_17735	PF03193	Protein of unknown function, DUF258
AL543_17740	PF02065	Melibiase
AL543_17745	PF01797	Transposase IS200 like
AL543_17750	PF01797	Transposase IS200 like
AL543_17755	PF00384	Molybdopterin oxidoreductase
AL543_17755	PF01568	Molydopterin dinucleotide binding domain
AL543_17760	PF03264	NapC/NirT cytochrome c family, N-terminal region
AL543_17765	PF06796	AL543_17765
AL543_17775	PF01226	Formate/nitrite transporter
AL543_17780	PF06146	AL543_17780
AL543_17785	PF13460	NADH(P)-binding
AL543_17790	PF02698	DUF218 domain
AL543_17800	PF00563	EAL domain
AL543_17800	PF00990	GGDEF domain
AL543_17805	PF04279	AL543_17805
AL543_17810	PF03061	Thioesterase superfamily
AL543_17815	PF03795	YCII-related domain
AL543_17820	PF16549	AL543_17820
AL543_17825	PF01717	Cobalamin-independent synthase, Catalytic domain
AL543_17825	PF08267	Cobalamin-independent synthase, N-terminal domain
AL543_17830	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_17830	PF03466	LysR substrate binding domain
AL543_17835	PF14056	AL543_17835
AL543_17845	PF00675	Insulinase (Peptidase family M16)
AL543_17845	PF05193	Peptidase M16 inactive domain
AL543_17850	PF00563	EAL domain
AL543_17850	PF13426	PAS domain
AL543_17855	PF04055	Radical SAM superfamily
AL543_17855	PF08497	AL543_17855
AL543_17855	PF11842	AL543_17855
AL543_17860	PF01810	AL543_17860
AL543_17865	PF01037	AsnC family
AL543_17865	PF13412	Winged helix-turn-helix DNA-binding
AL543_17870	PF04310	MukB N-terminal
AL543_17870	PF13558	Putative exonuclease SbcCD, C subunit
AL543_17870	PF16330	AL543_17870
AL543_17875	PF04288	MukE-like family
AL543_17880	PF03882	KicB killing factor
AL543_17880	PF17192	AL543_17880
AL543_17880	PF17193	AL543_17880
AL543_17885	PF08241	Methyltransferase domain
AL543_17890	PF02698	DUF218 domain
AL543_17895	PF00072	Response regulator receiver domain
AL543_17895	PF00486	Transcriptional regulatory protein, C terminal
AL543_17900	PF02613	Nitrate reductase delta subunit
AL543_17905	PF00356	Bacterial regulatory proteins, lacI family
AL543_17905	PF13377	Periplasmic binding protein-like domain
AL543_17910	PF04993	TfoX N-terminal domain
AL543_17910	PF04994	TfoX C-terminal domain
AL543_17915	PF09335	AL543_17915
AL543_17920	PF09413	Domain of unknown function (DUF2007)
AL543_17925	PF00561	alpha/beta hydrolase fold
AL543_17930	PF00534	Glycosyl transferases group 1
AL543_17930	PF08323	Starch synthase catalytic domain
AL543_17935	PF00483	Nucleotidyl transferase
AL543_17940	PF01797	Transposase IS200 like
AL543_17945	PF01131	DNA topoisomerase
AL543_17945	PF01396	AL543_17945
AL543_17945	PF01751	Toprim domain
AL543_17945	PF08272	Topoisomerase I zinc-ribbon-like
AL543_17950	PF10692	Protein of unknown function (DUF2498)
AL543_17955	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AL543_17965	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
AL543_17970	PF04376	AL543_17970
AL543_17970	PF04377	AL543_17970
AL543_17975	PF01176	Translation initiation factor 1A / IF-1
AL543_17980	PF07055	Enoyl reductase FAD binding domain
AL543_17980	PF12241	Trans-2-enoyl-CoA reductase catalytic region
AL543_17980	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
AL543_17985	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL543_17985	PF02770	Acyl-CoA dehydrogenase, middle domain
AL543_17985	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL543_17985	PF09317	AL543_17985
AL543_17990	PF00440	Bacterial regulatory proteins, tetR family
AL543_18000	PF07383	AL543_18000
AL543_18005	PF00171	Aldehyde dehydrogenase family
AL543_18010	PF00440	Bacterial regulatory proteins, tetR family
AL543_18010	PF14246	AefR-like transcriptional repressor, C-terminal region
AL543_18015	PF16576	AL543_18015
AL543_18020	PF00873	AcrB/AcrD/AcrF family
AL543_18025	PF13358	DDE superfamily endonuclease
AL543_18025	PF13384	Homeodomain-like domain
AL543_18025	PF13592	AL543_18025
AL543_18030	PF00563	EAL domain
AL543_18035	PF03575	Peptidase family S51
AL543_18040	PF01546	Peptidase family M20/M25/M40
AL543_18045	PF03606	AL543_18045
AL543_18050	PF01380	SIS domain
AL543_18050	PF01418	Helix-turn-helix domain, rpiR family
AL543_18055	PF13360	PQQ-like domain
AL543_18065	PF07719	Tetratricopeptide repeat
AL543_18065	PF13181	Tetratricopeptide repeat
AL543_18065	PF13432	Tetratricopeptide repeat
AL543_18070	PF00482	Type II secretion system (T2SS), protein F
AL543_18075	PF00482	Type II secretion system (T2SS), protein F
AL543_18080	PF00437	Type II/IV secretion system protein
AL543_18090	PF07811	AL543_18090
AL543_18095	PF07811	AL543_18095
AL543_18100	PF13400	AL543_18100
AL543_18110	PF00263	AL543_18110
AL543_18110	PF13629	AL543_18110
AL543_18115	PF08666	SAF domain
AL543_18115	PF16976	AL543_18115
AL543_18125	PF01478	Type IV leader peptidase family
AL543_18140	PF12833	Helix-turn-helix domain
AL543_18145	PF01055	Glycosyl hydrolases family 31
AL543_18145	PF16338	AL543_18145
AL543_18145	PF17137	AL543_18145
AL543_18150	PF13229	Right handed beta helix region
AL543_18155	PF04055	Radical SAM superfamily
AL543_18155	PF13186	Iron-sulfur cluster-binding domain
AL543_18160	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_18160	PF03466	LysR substrate binding domain
AL543_18165	PF03401	Tripartite tricarboxylate transporter family receptor
AL543_18170	PF07331	AL543_18170
AL543_18175	PF01970	AL543_18175
AL543_18180	PF00884	Sulfatase
AL543_18190	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL543_18195	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL543_18200	PF07971	Glycosyl hydrolase family 92
AL543_18210	PF07971	Glycosyl hydrolase family 92
AL543_18215	PF07971	Glycosyl hydrolase family 92
AL543_18220	PF07971	Glycosyl hydrolase family 92
AL543_18225	PF07971	Glycosyl hydrolase family 92
AL543_18230	PF00892	EamA-like transporter family
AL543_18235	PF00155	Aminotransferase class I and II
AL543_18235	PF00392	Bacterial regulatory proteins, gntR family
AL543_18240	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL543_18240	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL543_18240	PF02378	Phosphotransferase system, EIIC
AL543_18245	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL543_18250	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL543_18255	PF12833	Helix-turn-helix domain
AL543_18260	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL543_18260	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL543_18260	PF02378	Phosphotransferase system, EIIC
AL543_18265	PF01238	Phosphomannose isomerase type I
AL543_18270	PF06610	AL543_18270
AL543_18275	PF00072	Response regulator receiver domain
AL543_18275	PF00512	His Kinase A (phospho-acceptor) domain
AL543_18275	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_18280	PF03695	Uncharacterised protein family (UPF0149)
AL543_18285	PF02445	Quinolinate synthetase A protein
AL543_18290	PF13174	Tetratricopeptide repeat
AL543_18290	PF13432	Tetratricopeptide repeat
AL543_18290	PF16331	AL543_18290
AL543_18295	PF00691	OmpA family
AL543_18300	PF04052	TolB amino-terminal domain
AL543_18300	PF07676	WD40-like Beta Propeller Repeat
AL543_18305	PF06519	TolA C-terminal
AL543_18310	PF02472	Biopolymer transport protein ExbD/TolR
AL543_18315	PF01618	AL543_18315
AL543_18320	PF03061	Thioesterase superfamily
AL543_18325	PF09600	AL543_18325
AL543_18330	PF08173	AL543_18330
AL543_18335	PF02322	AL543_18335
AL543_18340	PF01654	AL543_18340
AL543_18345	PF05491	Holliday junction DNA helicase ruvB C-terminus
AL543_18345	PF05496	Holliday junction DNA helicase ruvB N-terminus
AL543_18350	PF01330	RuvA N terminal domain
AL543_18350	PF07499	RuvA, C-terminal domain
AL543_18350	PF14520	Helix-hairpin-helix domain
AL543_18355	PF02075	Crossover junction endodeoxyribonuclease RuvC
AL543_18360	PF01406	tRNA synthetases class I (C) catalytic domain
AL543_18360	PF09190	DALR domain
AL543_18365	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AL543_18370	PF00149	Calcineurin-like phosphoesterase
AL543_18375	PF00563	EAL domain
AL543_18375	PF08668	HDOD domain
AL543_18380	PF02810	SEC-C motif
AL543_18385	PF09829	AL543_18385
AL543_18390	PF13609	Gram-negative porin
AL543_18400	PF06733	DEAD_2
AL543_18400	PF13307	Helicase C-terminal domain
AL543_18405	PF01925	AL543_18405
AL543_18410	PF07445	Primosomal replication protein priB and priC
AL543_18415	PF10689	AL543_18415
AL543_18420	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_18420	PF00672	HAMP domain
AL543_18425	PF03372	Endonuclease/Exonuclease/phosphatase family
AL543_18430	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_18435	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_18440	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL543_18445	PF00005	ABC transporter
AL543_18450	PF11840	AL543_18450
AL543_18455	PF01228	Glycine radical
AL543_18455	PF02901	Pyruvate formate lyase
AL543_18460	PF09982	Uncharacterized protein conserved in bacteria (DUF2219)
AL543_18465	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_18470	PF04055	Radical SAM superfamily
AL543_18470	PF13353	4Fe-4S single cluster domain
AL543_18475	PF01891	Cobalt uptake substrate-specific transmembrane region
AL543_18480	PF03887	YfbU domain
AL543_18485	PF06798	AL543_18485
AL543_18485	PF08298	PrkA AAA domain
AL543_18490	PF04285	AL543_18490
AL543_18495	PF04293	AL543_18495
AL543_18500	PF00367	phosphotransferase system, EIIB
AL543_18500	PF02378	Phosphotransferase system, EIIC
AL543_18505	PF00072	Response regulator receiver domain
AL543_18505	PF00486	Transcriptional regulatory protein, C terminal
AL543_18510	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_18515	PF01547	Bacterial extracellular solute-binding protein
AL543_18520	PF01609	Transposase DDE domain
AL543_18520	PF13006	AL543_18520
AL543_18525	PF02348	Cytidylyltransferase
AL543_18530	PF03966	Trm112p-like protein
AL543_18535	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
AL543_18540	PF00005	ABC transporter
AL543_18540	PF00664	ABC transporter transmembrane region
AL543_18545	PF00753	Metallo-beta-lactamase superfamily
AL543_18545	PF03772	AL543_18545
AL543_18545	PF13567	AL543_18545
AL543_18550	PF09835	AL543_18550
AL543_18555	PF02687	AL543_18555
AL543_18555	PF12704	MacB-like periplasmic core domain
AL543_18560	PF00005	ABC transporter
AL543_18565	PF02687	AL543_18565
AL543_18565	PF12704	MacB-like periplasmic core domain
AL543_18575	PF00270	DEAD/DEAH box helicase
AL543_18575	PF00271	Helicase conserved C-terminal domain
AL543_18575	PF02559	CarD-like/TRCF domain
AL543_18575	PF03461	TRCF domain
AL543_18580	PF10972	AL543_18580
AL543_18585	PF13302	Acetyltransferase (GNAT) domain
AL543_18590	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL543_18595	PF05728	Uncharacterised protein family (UPF0227)
AL543_18600	PF01636	Phosphotransferase enzyme family
AL543_18605	PF13036	Protein of unknown function (DUF3897)
AL543_18610	PF07233	Protein of unknown function (DUF1425)
AL543_18620	PF01230	HIT domain
AL543_18625	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_18630	PF09002	Domain of unknown function (DUF1887)
AL543_18635	PF00392	Bacterial regulatory proteins, gntR family
AL543_18635	PF07840	FadR C-terminal domain
AL543_18640	PF06450	AL543_18640
AL543_18645	PF02600	Disulfide bond formation protein DsbB
AL543_18650	PF01580	FtsK/SpoIIIE family
AL543_18650	PF09397	Ftsk gamma domain
AL543_18650	PF13491	AL543_18650
AL543_18655	PF01037	AsnC family
AL543_18655	PF13412	Winged helix-turn-helix DNA-binding
AL543_18660	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
AL543_18660	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
AL543_18665	PF13679	AL543_18665
AL543_18670	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_18670	PF03466	LysR substrate binding domain
AL543_18680	PF06175	tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
AL543_18685	PF01797	Transposase IS200 like
AL543_18690	PF16313	AL543_18690
AL543_18700	PF00005	ABC transporter
AL543_18705	PF00005	ABC transporter
AL543_18705	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL543_18710	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL543_18715	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_18720	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_18725	PF16130	AL543_18725
AL543_18735	PF03372	Endonuclease/Exonuclease/phosphatase family
AL543_18740	PF01740	STAS domain
AL543_18745	PF00691	OmpA family
AL543_18750	PF02563	Polysaccharide biosynthesis/export protein
AL543_18750	PF10531	SLBB domain
AL543_18760	PF01627	Hpt domain
AL543_18765	PF00072	Response regulator receiver domain
AL543_18765	PF00158	Sigma-54 interaction domain
AL543_18765	PF02954	Bacterial regulatory protein, Fis family
AL543_18770	PF00534	Glycosyl transferases group 1
AL543_18770	PF13579	Glycosyl transferase 4-like domain
AL543_18775	PF00534	Glycosyl transferases group 1
AL543_18775	PF13439	Glycosyltransferase Family 4
AL543_18780	PF00534	Glycosyl transferases group 1
AL543_18785	PF01943	AL543_18785
AL543_18790	PF04932	AL543_18790
AL543_18795	PF00132	Bacterial transferase hexapeptide (six repeats)
AL543_18800	PF13692	Glycosyl transferases group 1
AL543_18805	PF02706	Chain length determinant protein
AL543_18810	PF00534	Glycosyl transferases group 1
AL543_18810	PF13439	Glycosyltransferase Family 4
AL543_18815	PF13641	Glycosyltransferase like family 2
AL543_18820	PF02397	AL543_18820
AL543_18825	PF07700	Heme NO binding
AL543_18830	PF00072	Response regulator receiver domain
AL543_18830	PF00512	His Kinase A (phospho-acceptor) domain
AL543_18830	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_18835	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL543_18840	PF13176	Tetratricopeptide repeat
AL543_18840	PF13181	Tetratricopeptide repeat
AL543_18845	PF06305	AL543_18845
AL543_18850	PF00216	Bacterial DNA-binding protein
AL543_18855	PF00575	S1 RNA binding domain
AL543_18860	PF02224	Cytidylate kinase
AL543_18865	PF12836	Helix-hairpin-helix motif
AL543_18870	PF13616	PPIC-type PPIASE domain
AL543_18870	PF13624	SurA N-terminal domain
AL543_18875	PF00216	Bacterial DNA-binding protein
AL543_18880	PF00004	ATPase family associated with various cellular activities (AAA)
AL543_18880	PF02190	ATP-dependent protease La (LON) domain
AL543_18880	PF05362	Lon protease (S16) C-terminal proteolytic domain
AL543_18885	PF06689	ClpX C4-type zinc finger
AL543_18885	PF07724	AAA domain (Cdc48 subfamily)
AL543_18885	PF10431	C-terminal, D2-small domain, of ClpB protein
AL543_18890	PF00574	Clp protease
AL543_18895	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL543_18895	PF05697	Bacterial trigger factor protein (TF)
AL543_18895	PF05698	Bacterial trigger factor protein (TF) C-terminus
AL543_18905	PF00512	His Kinase A (phospho-acceptor) domain
AL543_18905	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_18905	PF02743	Cache domain
AL543_18910	PF00072	Response regulator receiver domain
AL543_18910	PF00158	Sigma-54 interaction domain
AL543_18910	PF02954	Bacterial regulatory protein, Fis family
AL543_18915	PF06808	AL543_18915
AL543_18920	PF04290	AL543_18920
AL543_18925	PF03480	Bacterial extracellular solute-binding protein, family 7
AL543_18930	PF02696	AL543_18930
AL543_18945	PF00563	EAL domain
AL543_18945	PF00990	GGDEF domain
AL543_18950	PF01066	CDP-alcohol phosphatidyltransferase
AL543_18955	PF01148	Cytidylyltransferase family
AL543_18960	PF01553	Acyltransferase
AL543_18965	PF13279	Thioesterase-like superfamily
AL543_18970	PF01569	PAP2 superfamily
AL543_18975	PF01810	AL543_18975
AL543_18980	PF12710	haloacid dehalogenase-like hydrolase
AL543_18985	PF00005	ABC transporter
AL543_18985	PF08402	TOBE domain
AL543_18990	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_18995	PF00528	Binding-protein-dependent transport system inner membrane component
AL543_19000	PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
AL543_19005	PF13343	Bacterial extracellular solute-binding protein
AL543_19015	PF01609	Transposase DDE domain
AL543_19015	PF13340	AL543_19015
AL543_19025	PF10129	AL543_19025
AL543_19035	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
AL543_19035	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
AL543_19045	PF00704	Glycosyl hydrolases family 18
AL543_19050	PF01773	Na+ dependent nucleoside transporter N-terminus
AL543_19050	PF07662	Na+ dependent nucleoside transporter C-terminus
AL543_19050	PF07670	Nucleoside recognition
AL543_19055	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_19055	PF03466	LysR substrate binding domain
AL543_19060	PF13406	Transglycosylase SLT domain
AL543_19065	PF05166	YcgL domain
AL543_19070	PF03775	Septum formation inhibitor MinC, C-terminal domain
AL543_19070	PF05209	Septum formation inhibitor MinC, N-terminal domain
AL543_19075	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AL543_19080	PF03776	Septum formation topological specificity factor MinE
AL543_19085	PF04170	NlpE N-terminal domain
AL543_19090	PF06844	Protein of unknown function (DUF1244)
AL543_19095	PF04280	Tim44-like domain
AL543_19095	PF07466	AL543_19095
AL543_19100	PF13305	WHG domain
AL543_19105	PF01553	Acyltransferase
AL543_19105	PF07690	Major Facilitator Superfamily
AL543_19110	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_19115	PF01381	Helix-turn-helix
AL543_19115	PF07883	Cupin domain
AL543_19120	PF03594	AL543_19120
AL543_19125	PF00501	AMP-binding enzyme
AL543_19125	PF13193	AMP-binding enzyme C-terminal domain
AL543_19130	PF13378	Enolase C-terminal domain-like
AL543_19135	PF00378	Enoyl-CoA hydratase/isomerase family
AL543_19140	PF12697	Alpha/beta hydrolase family
AL543_19145	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL543_19145	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL543_19145	PF16582	AL543_19145
AL543_19150	PF00425	chorismate binding enzyme
AL543_19155	PF00155	Aminotransferase class I and II
AL543_19160	PF13023	HD domain
AL543_19165	PF01966	HD domain
AL543_19165	PF13286	Phosphohydrolase-associated domain
AL543_19170	PF03942	AL543_19170
AL543_19175	PF01694	Rhomboid family
AL543_19180	PF01432	Peptidase family M3
AL543_19185	PF00570	HRDC domain
AL543_19185	PF01612	3'-5' exonuclease
AL543_19190	PF00501	AMP-binding enzyme
AL543_19190	PF13193	AMP-binding enzyme C-terminal domain
AL543_19195	PF00561	alpha/beta hydrolase fold
AL543_19200	PF03843	AL543_19200
AL543_19210	PF00814	Glycoprotease family
AL543_19215	PF13307	Helicase C-terminal domain
AL543_19225	PF00551	Formyl transferase
AL543_19225	PF01842	ACT domain
AL543_19230	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL543_19230	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL543_19235	PF01343	Peptidase family S49
AL543_19240	PF00710	Asparaginase
AL543_19245	PF07023	AL543_19245
AL543_19250	PF11207	AL543_19250
AL543_19255	PF01641	SelR domain
AL543_19260	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL543_19260	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL543_19265	PF01263	Aldose 1-epimerase
AL543_19270	PF11059	AL543_19270
AL543_19275	PF13649	Methyltransferase domain
AL543_19280	PF04187	Protein of unknown function, DUF399
AL543_19290	PF13467	Ribbon-helix-helix domain
AL543_19295	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL543_19300	PF03992	Antibiotic biosynthesis monooxygenase
AL543_19305	PF00072	Response regulator receiver domain
AL543_19305	PF01584	CheW-like domain
AL543_19310	PF00480	ROK family
AL543_19315	PF00224	Pyruvate kinase, barrel domain
AL543_19315	PF02887	Pyruvate kinase, alpha/beta domain
AL543_19320	PF01734	Patatin-like phospholipase
AL543_19325	PF01389	OmpA-like transmembrane domain
AL543_19330	PF00209	Sodium:neurotransmitter symporter family
AL543_19340	PF00367	phosphotransferase system, EIIB
AL543_19340	PF02378	Phosphotransferase system, EIIC
AL543_19345	PF01026	TatD related DNase
AL543_19350	PF09115	DNA polymerase III, delta subunit, C terminal
AL543_19350	PF13177	DNA polymerase III, delta subunit
AL543_19355	PF02223	Thymidylate kinase
AL543_19360	PF02618	YceG-like family
AL543_19365	PF01063	Aminotransferase class IV
AL543_19370	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL543_19370	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL543_19375	PF00550	Phosphopantetheine attachment site
AL543_19380	PF13561	Enoyl-(Acyl carrier protein) reductase
AL543_19385	PF00698	Acyl transferase domain
AL543_19390	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AL543_19390	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL543_19395	PF02504	Fatty acid synthesis protein
AL543_19400	PF01783	Ribosomal L32p protein family
AL543_19405	PF02620	AL543_19405
AL543_19410	PF02545	Maf-like protein
AL543_19415	PF00849	RNA pseudouridylate synthase
AL543_19415	PF01479	S4 domain
AL543_19425	PF00575	S1 RNA binding domain
AL543_19425	PF10150	Ribonuclease E/G family
AL543_19430	PF00916	AL543_19430
AL543_19430	PF01740	STAS domain
AL543_19440	PF01609	Transposase DDE domain
AL543_19440	PF13006	AL543_19440
AL543_19445	PF00171	Aldehyde dehydrogenase family
AL543_19445	PF00465	Iron-containing alcohol dehydrogenase
AL543_19450	PF01914	AL543_19450
AL543_19455	PF00520	Ion transport protein
AL543_19460	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AL543_19460	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AL543_19465	PF03553	AL543_19465
AL543_19470	PF01627	Hpt domain
AL543_19475	PF04245	AL543_19475
AL543_19480	PF07208	Protein of unknown function (DUF1414)
AL543_19485	PF00884	Sulfatase
AL543_19485	PF11893	AL543_19485
AL543_19505	PF13358	DDE superfamily endonuclease
AL543_19505	PF13551	Winged helix-turn helix
AL543_19505	PF13592	AL543_19505
AL543_19515	PF00106	short chain dehydrogenase
AL543_19530	PF00850	Histone deacetylase domain
AL543_19535	PF01131	DNA topoisomerase
AL543_19535	PF01751	Toprim domain
AL543_19540	PF00462	Glutaredoxin
AL543_19545	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
AL543_19545	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
AL543_19550	PF11993	AL543_19550
AL543_19555	PF00106	short chain dehydrogenase
AL543_19560	PF04333	AL543_19560
AL543_19565	PF14559	Tetratricopeptide repeat
AL543_19570	PF03918	Cytochrome C biogenesis protein
AL543_19575	PF08534	Redoxin
AL543_19580	PF01578	AL543_19580
AL543_19580	PF16327	AL543_19580
AL543_19585	PF03100	CcmE
AL543_19590	PF04995	AL543_19590
AL543_19595	PF01578	AL543_19595
AL543_19600	PF03379	AL543_19600
AL543_19605	PF00005	ABC transporter
AL543_19610	PF10975	AL543_19610
AL543_19615	PF01584	CheW-like domain
AL543_19620	PF01584	CheW-like domain
AL543_19625	PF13614	AAA domain
AL543_19630	PF00072	Response regulator receiver domain
AL543_19630	PF01339	CheB methylesterase
AL543_19635	PF01584	CheW-like domain
AL543_19635	PF01627	Hpt domain
AL543_19635	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_19635	PF02895	Signal transducing histidine kinase, homodimeric domain
AL543_19640	PF04344	Chemotaxis phosphatase, CheZ
AL543_19645	PF00072	Response regulator receiver domain
AL543_19650	PF04539	Sigma-70 region 3
AL543_19650	PF04542	Sigma-70 region 2
AL543_19650	PF04545	Sigma-70, region 4
AL543_19655	PF10609	ParA/MinD ATPase like
AL543_19660	PF00448	SRP54-type protein, GTPase domain
AL543_19665	PF00771	FHIPEP family
AL543_19670	PF00300	Histidine phosphatase superfamily (branch 1)
AL543_19675	PF00675	Insulinase (Peptidase family M16)
AL543_19675	PF05193	Peptidase M16 inactive domain
AL543_19675	PF16187	AL543_19675
AL543_19680	PF06185	YecM protein
AL543_19685	PF00750	tRNA synthetases class I (R)
AL543_19685	PF03485	Arginyl tRNA synthetase N terminal domain
AL543_19685	PF05746	DALR anticodon binding domain
AL543_19690	PF01230	HIT domain
AL543_19695	PF09012	FeoC like transcriptional regulator
AL543_19700	PF02421	Ferrous iron transport protein B
AL543_19700	PF07664	AL543_19700
AL543_19700	PF07670	Nucleoside recognition
AL543_19705	PF04023	FeoA domain
AL543_19710	PF12833	Helix-turn-helix domain
AL543_19715	PF01297	Periplasmic solute binding protein family
AL543_19720	PF00005	ABC transporter
AL543_19725	PF00950	AL543_19725
AL543_19730	PF00549	CoA-ligase
AL543_19730	PF02629	CoA binding domain
AL543_19735	PF00549	CoA-ligase
AL543_19735	PF08442	ATP-grasp domain
AL543_19740	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL543_19740	PF00364	Biotin-requiring enzyme
AL543_19740	PF02817	e3 binding domain
AL543_19745	PF00676	Dehydrogenase E1 component
AL543_19745	PF02779	Transketolase, pyrimidine binding domain
AL543_19745	PF16078	AL543_19745
AL543_19745	PF16870	AL543_19745
AL543_19750	PF13085	2Fe-2S iron-sulfur cluster binding domain
AL543_19750	PF13534	4Fe-4S dicluster domain
AL543_19755	PF00890	FAD binding domain
AL543_19755	PF02910	Fumarate reductase flavoprotein C-term
AL543_19760	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
AL543_19765	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
AL543_19770	PF00285	Citrate synthase
AL543_19775	PF01784	NIF3 (NGG1p interacting factor 3)
AL543_19780	PF08907	AL543_19780
AL543_19785	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL543_19785	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL543_19785	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL543_19785	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL543_19790	PF03925	SeqA protein
AL543_19790	PF17206	AL543_19790
AL543_19795	PF12697	Alpha/beta hydrolase family
AL543_19800	PF10981	AL543_19800
AL543_19805	PF00258	Flavodoxin
AL543_19810	PF04172	AL543_19810
AL543_19815	PF03788	AL543_19815
AL543_19820	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL543_19820	PF03466	LysR substrate binding domain
AL543_19825	PF14539	Domain of unknown function (DUF4442)
AL543_19830	PF01475	Ferric uptake regulator family
AL543_19835	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AL543_19835	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AL543_19840	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL543_19840	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL543_19840	PF11890	Domain of unknown function (DUF3410)
AL543_19845	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL543_19845	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL543_19850	PF01266	FAD dependent oxidoreductase
AL543_19850	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
AL543_19855	PF03358	NADPH-dependent FMN reductase
AL543_19860	PF08891	AL543_19860
AL543_19865	PF04315	AL543_19865
AL543_19870	PF03458	AL543_19870
AL543_19875	PF01264	Chorismate synthase
AL543_19885	PF05175	Methyltransferase small domain
AL543_19890	PF01713	Smr domain
AL543_19895	PF01312	FlhB HrpN YscU SpaS Family
AL543_19900	PF01311	AL543_19900
AL543_19905	PF01313	AL543_19905
AL543_19910	PF00813	AL543_19910
AL543_19915	PF04347	AL543_19915
AL543_19920	PF01052	Surface presentation of antigens (SPOA)
AL543_19925	PF01052	Surface presentation of antigens (SPOA)
AL543_19925	PF02154	Flagellar motor switch protein FliM
AL543_19930	PF03748	AL543_19930
AL543_19935	PF02120	Flagellar hook-length control protein FliK
AL543_19940	PF02050	Flagellar FliJ protein
AL543_19945	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL543_19950	PF02108	AL543_19950
AL543_19955	PF01706	FliG C-terminal domain
AL543_19955	PF14841	FliG middle domain
AL543_19955	PF14842	FliG N-terminal domain
AL543_19960	PF01514	Secretory protein of YscJ/FliF family
AL543_19960	PF08345	AL543_19960
AL543_19965	PF02049	AL543_19965
AL543_19970	PF00072	Response regulator receiver domain
AL543_19970	PF00158	Sigma-54 interaction domain
AL543_19970	PF02954	Bacterial regulatory protein, Fis family
AL543_19975	PF00512	His Kinase A (phospho-acceptor) domain
AL543_19975	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL543_19975	PF13188	PAS domain
AL543_19980	PF00158	Sigma-54 interaction domain
AL543_19980	PF02954	Bacterial regulatory protein, Fis family
AL543_19980	PF06490	AL543_19980
AL543_19985	PF02561	Flagellar protein FliS
AL543_19995	PF02465	AL543_19995
AL543_19995	PF07195	AL543_19995
AL543_19995	PF07196	Flagellin hook IN motif
AL543_20000	PF03646	FlaG protein
AL543_20005	PF00669	Bacterial flagellin N-terminal helical region
AL543_20005	PF00700	Bacterial flagellin C-terminal helical region
AL543_20005	PF07196	Flagellin hook IN motif
AL543_20010	PF00669	Bacterial flagellin N-terminal helical region
AL543_20010	PF00700	Bacterial flagellin C-terminal helical region
AL543_20010	PF07196	Flagellin hook IN motif
AL543_20015	PF00669	Bacterial flagellin N-terminal helical region
AL543_20015	PF00700	Bacterial flagellin C-terminal helical region
AL543_20015	PF07196	Flagellin hook IN motif
AL543_20020	PF04261	Dyp-type peroxidase family
AL543_20025	PF11143	AL543_20025
AL543_20030	PF11169	AL543_20030
AL543_20035	PF09904	Winged helix-turn helix
AL543_20040	PF03960	ArsC family
AL543_20045	PF01546	Peptidase family M20/M25/M40
AL543_20045	PF07687	Peptidase dimerisation domain
AL543_20050	PF02557	D-alanyl-D-alanine carboxypeptidase
AL543_20055	PF11446	AL543_20055
AL543_20060	PF06804	NlpB/DapX lipoprotein
AL543_20065	PF00701	Dihydrodipicolinate synthetase family
AL543_20070	PF13740	ACT domain
AL543_20075	PF00578	AhpC/TSA family
AL543_20080	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL543_20080	PF00672	HAMP domain
AL543_20080	PF02743	Cache domain
AL543_20085	PF01594	AL543_20085
AL543_20090	PF01206	Sulfurtransferase TusA
AL543_20095	PF01435	Peptidase family M48
AL543_20095	PF14559	Tetratricopeptide repeat
AL543_20100	PF03960	ArsC family
AL543_20105	PF03358	NADPH-dependent FMN reductase
AL543_20110	PF09842	AL543_20110
AL543_20115	PF09839	AL543_20115
AL543_20120	PF00860	Permease family
AL543_20125	PF04073	Aminoacyl-tRNA editing domain
AL543_20130	PF00149	Calcineurin-like phosphoesterase
AL543_20130	PF02872	5'-nucleotidase, C-terminal domain
AL543_20135	PF00793	DAHP synthetase I family
AL543_20140	PF13369	AL543_20140
AL543_20140	PF13371	Tetratricopeptide repeat
AL543_20145	PF04247	AL543_20145
AL543_20150	PF13847	Methyltransferase domain
AL543_20155	PF00472	RF-1 domain
AL543_20155	PF03462	PCRF domain
AL543_20160	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
AL543_20160	PF01488	Shikimate / quinate 5-dehydrogenase
AL543_20160	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
AL543_20165	PF03550	Outer membrane lipoprotein LolB
AL543_20170	PF00288	GHMP kinases N terminal domain
AL543_20170	PF08544	GHMP kinases C terminal
AL543_20175	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
AL543_20175	PF14572	Phosphoribosyl synthetase-associated domain
AL543_20180	PF01195	Peptidyl-tRNA hydrolase
AL543_20185	PF01926	50S ribosome-binding GTPase
AL543_20185	PF06071	Protein of unknown function (DUF933)
AL543_20270	PF00669	Bacterial flagellin N-terminal helical region
AL543_20270	PF00700	Bacterial flagellin C-terminal helical region
AL543_20270	PF07196	Flagellin hook IN motif
AL543_20280	PF00669	Bacterial flagellin N-terminal helical region
AL543_20280	PF00700	Bacterial flagellin C-terminal helical region
AL543_20280	PF07196	Flagellin hook IN motif
AL543_20285	PF00669	Bacterial flagellin N-terminal helical region
AL543_20290	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL543_20295	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AL543_20295	PF10135	AL543_20295
AL543_20300	PF02119	AL543_20300
AL543_20305	PF02107	AL543_20305
AL543_20310	PF00460	Flagella basal body rod protein
AL543_20310	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL543_20315	PF00460	Flagella basal body rod protein
AL543_20315	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL543_20320	PF00460	Flagella basal body rod protein
AL543_20320	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL543_20320	PF07559	Flagellar basal body protein FlaE
AL543_20325	PF03963	AL543_20325
AL543_20325	PF13860	FlgD Ig-like domain
AL543_20325	PF13861	FlgD Tudor-like domain
AL543_20330	PF00460	Flagella basal body rod protein
AL543_20330	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL543_20350	PF01739	CheR methyltransferase, SAM binding domain
AL543_20350	PF03705	CheR methyltransferase, all-alpha domain
AL543_20355	PF00072	Response regulator receiver domain
AL543_20355	PF01584	CheW-like domain
AL543_20360	PF13144	SAF-like
AL543_20365	PF04316	Anti-sigma-28 factor, FlgM
AL543_20370	PF05130	FlgN protein
AL543_20375	PF02169	LPP20 lipoprotein
AL543_20385	PF16538	AL543_20385
AL543_20385	PF16539	AL543_20385
AL543_20385	PF16548	AL543_20385
AL543_20400	PF00691	OmpA family
AL543_20400	PF01389	OmpA-like transmembrane domain
AL543_20405	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AL543_20410	PF00122	E1-E2 ATPase
AL543_20410	PF00403	Heavy-metal-associated domain
AL543_20410	PF00702	haloacid dehalogenase-like hydrolase
AL543_20415	PF04214	AL543_20415
AL543_20420	PF00728	Glycosyl hydrolase family 20, catalytic domain
AL543_20420	PF02838	Glycosyl hydrolase family 20, domain 2
AL543_20420	PF03173	Putative carbohydrate binding domain
AL543_20420	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
AL543_20425	PF01963	AL543_20425
AL543_20435	PF11346	AL543_20435
AL543_20440	PF01713	Smr domain
AL543_20445	PF00849	RNA pseudouridylate synthase
AL543_20445	PF01479	S4 domain
AL543_20450	PF14681	Uracil phosphoribosyltransferase
AL543_20455	PF00586	AIR synthase related protein, N-terminal domain
AL543_20455	PF02769	AIR synthase related protein, C-terminal domain
AL543_20460	PF00551	Formyl transferase
AL543_20465	PF13230	Glutamine amidotransferases class-II
AL543_20470	PF13580	SIS domain
AL543_20475	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL543_20475	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL543_20475	PF09317	AL543_20475
AL543_20480	PF02322	AL543_20480
AL543_20485	PF01654	AL543_20485
AL543_20490	PF07681	AL543_20490
AL543_20495	PF09836	Uncharacterized protein conserved in bacteria (DUF2063)
AL543_20500	PF05114	Protein of unknown function (DUF692)
AL543_20510	PF12706	Beta-lactamase superfamily domain
AL543_20520	PF00929	Exonuclease
AL543_20525	PF00075	RNase H
AL543_20530	PF08241	Methyltransferase domain
AL543_20535	PF00753	Metallo-beta-lactamase superfamily
AL543_20535	PF16123	AL543_20535
AL543_20540	PF01464	Transglycosylase SLT domain
AL543_20540	PF01476	LysM domain
AL543_20545	PF03372	Endonuclease/Exonuclease/phosphatase family
AL543_20550	PF00543	Nitrogen regulatory protein P-II
AL543_20555	PF00034	Cytochrome c
AL543_20560	PF01171	PP-loop family
AL543_20560	PF09179	TilS substrate binding domain
AL543_20560	PF11734	TilS substrate C-terminal domain
AL543_20565	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
AL543_20585	PF00589	Phage integrase family
AL543_20585	PF02899	Phage integrase, N-terminal SAM-like domain
AL543_20585	PF12167	AL543_20585
AL543_20615	PF10940	AL543_20615
AL543_20640	PF01638	HxlR-like helix-turn-helix
AL543_20720	PF04875	AL543_20720
AL543_20740	PF11665	AL543_20740
AL543_20745	PF11665	AL543_20745
AL543_20770	PF11665	AL543_20770
AL543_20775	PF11665	AL543_20775
AL543_20780	PF12493	AL543_20780
AL543_20815	PF04875	AL543_20815
AL543_20825	PF11665	AL543_20825
AL543_20830	PF11665	AL543_20830
AL543_20880	PF14375	AL543_20880
AL543_20890	PF12493	AL543_20890
AL543_20895	PF11665	AL543_20895
AL543_20945	PF12493	AL543_20945
AL543_20950	PF12493	AL543_20950
AL543_20965	PF11665	AL543_20965
AL543_20985	PF11665	AL543_20985
AL543_20995	PF11665	AL543_20995
AL543_21010	PF11665	AL543_21010
AL543_21025	PF11665	AL543_21025
AL543_21040	PF12493	AL543_21040
AL543_21045	PF11665	AL543_21045
AL543_21050	PF04875	AL543_21050
AL543_21065	PF12493	AL543_21065
AL543_21070	PF12493	AL543_21070
AL543_21085	PF11665	AL543_21085
AL543_21120	PF04875	AL543_21120
AL543_21125	PF11665	AL543_21125
AL543_21135	PF04875	AL543_21135
AL543_21145	PF04875	AL543_21145
AL543_21150	PF11665	AL543_21150
AL543_21170	PF12493	AL543_21170
AL543_21175	PF11665	AL543_21175
AL543_21190	PF12493	AL543_21190
AL543_21195	PF11665	AL543_21195
AL543_21215	PF12493	AL543_21215
AL543_21220	PF11665	AL543_21220
AL543_21240	PF12493	AL543_21240
AL543_21250	PF12493	AL543_21250
AL543_21255	PF12493	AL543_21255
AL543_21270	PF12493	AL543_21270
AL543_21280	PF11665	AL543_21280
AL543_21285	PF11665	AL543_21285
AL543_21300	PF12493	AL543_21300
AL543_21310	PF11665	AL543_21310
AL543_21315	PF11665	AL543_21315
AL543_21320	PF12493	AL543_21320
AL543_21325	PF11665	AL543_21325
AL543_21330	PF11665	AL543_21330
AL543_21350	PF11665	AL543_21350
AL543_21370	PF12493	AL543_21370
AL543_21375	PF11665	AL543_21375
AL543_21395	PF04875	AL543_21395
AL543_21400	PF11665	AL543_21400
AL543_21405	PF11665	AL543_21405
AL543_21410	PF11665	AL543_21410
AL543_21420	PF11665	AL543_21420
AL543_21670	PF04927	AL543_21670
AL543_21745	PF01609	Transposase DDE domain
AL543_21845	PF08173	AL543_21845