AL543_00045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_00085 SM00420 helix_turn_helix, Deoxyribose operon repressor AL543_00085 SM01134 AL543_00085 AL543_00100 SM01007 Class II Aldolase and Adducin N-terminal domain AL543_00280 SM00530 Helix-turn-helix XRE-family like proteins AL543_00310 SM00829 Enoylreductase AL543_00345 SM00267 diguanylate cyclase AL543_00345 SM00448 cheY-homologous receiver domain AL543_00350 SM00091 PAS domain AL543_00350 SM00387 Histidine kinase-like ATPases AL543_00350 SM00388 His Kinase A (phosphoacceptor) domain AL543_00350 SM00448 cheY-homologous receiver domain AL543_00350 SM01079 AL543_00350 AL543_00360 SM00481 DNA polymerase alpha chain like domain AL543_00375 SM01350 AL543_00375 AL543_00415 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_00415 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_00430 SM00729 Elongator protein 3, MiaB family, Radical SAM AL543_00460 SM00382 ATPases associated with a variety of cellular activities AL543_00500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_00500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_00550 SM00382 ATPases associated with a variety of cellular activities AL543_00560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_00565 SM00357 Cold shock protein domain AL543_00580 SM00342 helix_turn_helix, arabinose operon control protein AL543_00590 SM00267 diguanylate cyclase AL543_00595 SM00420 helix_turn_helix, Deoxyribose operon repressor AL543_00595 SM01134 AL543_00595 AL543_00635 SM00382 ATPases associated with a variety of cellular activities AL543_00650 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AL543_00660 SM00421 helix_turn_helix, Lux Regulon AL543_00685 SM00260 Two component signalling adaptor domain AL543_00685 SM00448 cheY-homologous receiver domain AL543_00690 SM00347 helix_turn_helix multiple antibiotic resistance protein AL543_00695 SM00267 diguanylate cyclase AL543_00705 SM00530 Helix-turn-helix XRE-family like proteins AL543_00710 SM00267 diguanylate cyclase AL543_00710 SM01079 AL543_00710 AL543_00735 SM00267 diguanylate cyclase AL543_00770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_00770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_00785 SM00382 ATPases associated with a variety of cellular activities AL543_00825 SM00331 Sigma factor PP2C-like phosphatases AL543_00850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_00860 SM01321 AL543_00860 AL543_00870 SM00382 ATPases associated with a variety of cellular activities AL543_00880 SM00062 Bacterial periplasmic substrate-binding proteins AL543_00925 SM00849 Metallo-beta-lactamase superfamily AL543_00955 SM00347 helix_turn_helix multiple antibiotic resistance protein AL543_00960 SM00450 Rhodanese Homology Domain AL543_00980 SM00829 Enoylreductase AL543_01055 SM00421 helix_turn_helix, Lux Regulon AL543_01080 SM00344 helix_turn_helix ASNC type AL543_01085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_01085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_01110 SM00342 helix_turn_helix, arabinose operon control protein AL543_01125 SM00421 helix_turn_helix, Lux Regulon AL543_01145 SM00052 Putative diguanylate phosphodiesterase AL543_01145 SM00267 diguanylate cyclase AL543_01150 SM00382 ATPases associated with a variety of cellular activities AL543_01170 SM00331 Sigma factor PP2C-like phosphatases AL543_01170 SM00448 cheY-homologous receiver domain AL543_01180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_01185 SM00448 cheY-homologous receiver domain AL543_01195 SM00138 Methyltransferase, chemotaxis proteins AL543_01200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_01200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_01205 SM00260 Two component signalling adaptor domain AL543_01210 SM00260 Two component signalling adaptor domain AL543_01215 SM00073 Histidine Phosphotransfer domain AL543_01215 SM00260 Two component signalling adaptor domain AL543_01215 SM00387 Histidine kinase-like ATPases AL543_01215 SM01231 AL543_01215 AL543_01220 SM00448 cheY-homologous receiver domain AL543_01245 SM00382 ATPases associated with a variety of cellular activities AL543_01255 SM01321 AL543_01255 AL543_01260 SM00387 Histidine kinase-like ATPases AL543_01260 SM00388 His Kinase A (phosphoacceptor) domain AL543_01265 SM00448 cheY-homologous receiver domain AL543_01265 SM00862 Transcriptional regulatory protein, C terminal AL543_01275 SM00822 AL543_01275 AL543_01280 SM01236 AL543_01280 AL543_01305 SM00470 ParB-like nuclease domain AL543_01360 SM00421 helix_turn_helix, Lux Regulon AL543_01375 SM00642 Alpha-amylase domain AL543_01430 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AL543_01430 SM00495 Chitin-binding domain type 3 AL543_01430 SM00636 AL543_01430 AL543_01455 SM00014 Acid phosphatase homologues AL543_01505 SM00530 Helix-turn-helix XRE-family like proteins AL543_01515 SM00245 tail specific protease AL543_01530 SM00267 diguanylate cyclase AL543_01535 SM00028 Tetratricopeptide repeats AL543_01560 SM00422 helix_turn_helix, mercury resistance AL543_01570 SM00257 Lysin motif AL543_01580 SM00487 DEAD-like helicases superfamily AL543_01580 SM00490 helicase superfamily c-terminal domain AL543_01585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_01585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_01605 SM00382 ATPases associated with a variety of cellular activities AL543_01610 SM00267 diguanylate cyclase AL543_01640 SM00052 Putative diguanylate phosphodiesterase AL543_01640 SM00267 diguanylate cyclase AL543_01655 SM00422 helix_turn_helix, mercury resistance AL543_01710 SM00347 helix_turn_helix multiple antibiotic resistance protein AL543_01730 SM00342 helix_turn_helix, arabinose operon control protein AL543_01745 SM00382 ATPases associated with a variety of cellular activities AL543_01810 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL543_01810 SM00895 AL543_01810 AL543_01820 SM00487 DEAD-like helicases superfamily AL543_01820 SM00490 helicase superfamily c-terminal domain AL543_01835 SM00342 helix_turn_helix, arabinose operon control protein AL543_01855 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_01855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_01865 SM01321 AL543_01865 AL543_01870 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_01870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_01885 SM00642 Alpha-amylase domain AL543_01900 SM00671 Sel1-like repeats. AL543_01915 SM01154 AL543_01915 AL543_01935 SM00342 helix_turn_helix, arabinose operon control protein AL543_01935 SM01009 AlkA N-terminal domain AL543_01955 SM00387 Histidine kinase-like ATPases AL543_01960 SM00448 cheY-homologous receiver domain AL543_02035 SM00450 Rhodanese Homology Domain AL543_02040 SM00052 Putative diguanylate phosphodiesterase AL543_02055 SM01321 AL543_02055 AL543_02120 SM00382 ATPases associated with a variety of cellular activities AL543_02120 SM01086 C-terminal, D2-small domain, of ClpB protein AL543_02125 SM00382 ATPases associated with a variety of cellular activities AL543_02185 SM00382 ATPases associated with a variety of cellular activities AL543_02205 SM00354 helix_turn _helix lactose operon repressor AL543_02220 SM00100 Cyclic nucleotide-monophosphate binding domain AL543_02240 SM00495 Chitin-binding domain type 3 AL543_02245 SM00091 PAS domain AL543_02245 SM00387 Histidine kinase-like ATPases AL543_02245 SM00388 His Kinase A (phosphoacceptor) domain AL543_02250 SM00382 ATPases associated with a variety of cellular activities AL543_02250 SM00448 cheY-homologous receiver domain AL543_02300 SM00354 helix_turn _helix lactose operon repressor AL543_02340 SM00267 diguanylate cyclase AL543_02345 SM00357 Cold shock protein domain AL543_02380 SM00028 Tetratricopeptide repeats AL543_02385 SM00327 von Willebrand factor (vWF) type A domain AL543_02435 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL543_02435 SM00382 ATPases associated with a variety of cellular activities AL543_02445 SM00357 Cold shock protein domain AL543_02465 SM00448 cheY-homologous receiver domain AL543_02470 SM00091 PAS domain AL543_02505 SM01240 AL543_02505 AL543_02530 SM00387 Histidine kinase-like ATPases AL543_02600 SM01040 BRO family, N-terminal domain AL543_02740 SM00487 DEAD-like helicases superfamily AL543_02740 SM00490 helicase superfamily c-terminal domain AL543_02760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_02760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_02765 SM00448 cheY-homologous receiver domain AL543_02765 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_02770 SM00387 Histidine kinase-like ATPases AL543_02795 SM00267 diguanylate cyclase AL543_02805 SM00458 Ricin-type beta-trefoil AL543_02810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_02810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_02815 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AL543_02845 SM00382 ATPases associated with a variety of cellular activities AL543_02850 SM00342 helix_turn_helix, arabinose operon control protein AL543_02910 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AL543_02920 SM01007 Class II Aldolase and Adducin N-terminal domain AL543_02935 SM00420 helix_turn_helix, Deoxyribose operon repressor AL543_02935 SM01134 AL543_02935 AL543_02965 SM01007 Class II Aldolase and Adducin N-terminal domain AL543_03050 SM00357 Cold shock protein domain AL543_03050 SM00955 AL543_03050 AL543_03055 SM00487 DEAD-like helicases superfamily AL543_03055 SM00490 helicase superfamily c-terminal domain AL543_03060 SM00020 Trypsin-like serine protease AL543_03105 SM00271 DnaJ molecular chaperone homology domain AL543_03115 SM00052 Putative diguanylate phosphodiesterase AL543_03115 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL543_03115 SM00267 diguanylate cyclase AL543_03130 SM00382 ATPases associated with a variety of cellular activities AL543_03140 SM00984 UDP binding domain AL543_03150 SM00797 Allophanate hydrolase subunit 2 AL543_03155 SM00796 Allophanate hydrolase subunit 1 AL543_03190 SM00487 DEAD-like helicases superfamily AL543_03190 SM00490 helicase superfamily c-terminal domain AL543_03215 SM00382 ATPases associated with a variety of cellular activities AL543_03220 SM00327 von Willebrand factor (vWF) type A domain AL543_03230 SM00382 ATPases associated with a variety of cellular activities AL543_03235 SM00062 Bacterial periplasmic substrate-binding proteins AL543_03235 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL543_03400 SM00387 Histidine kinase-like ATPases AL543_03400 SM00388 His Kinase A (phosphoacceptor) domain AL543_03400 SM00448 cheY-homologous receiver domain AL543_03435 SM00382 ATPases associated with a variety of cellular activities AL543_03495 SM00014 Acid phosphatase homologues AL543_03505 SM00851 MGS-like domain AL543_03515 SM00387 Histidine kinase-like ATPases AL543_03515 SM00388 His Kinase A (phosphoacceptor) domain AL543_03515 SM00448 cheY-homologous receiver domain AL543_03540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_03540 SM00387 Histidine kinase-like ATPases AL543_03540 SM00388 His Kinase A (phosphoacceptor) domain AL543_03545 SM00448 cheY-homologous receiver domain AL543_03560 SM00495 Chitin-binding domain type 3 AL543_03560 SM00636 AL543_03560 AL543_03570 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL543_03570 SM00267 diguanylate cyclase AL543_03615 SM01081 Putative carbohydrate binding domain AL543_03620 SM00822 AL543_03620 AL543_03695 SM00028 Tetratricopeptide repeats AL543_03720 SM00382 ATPases associated with a variety of cellular activities AL543_03740 SM00387 Histidine kinase-like ATPases AL543_03745 SM00421 helix_turn_helix, Lux Regulon AL543_03745 SM00448 cheY-homologous receiver domain AL543_03750 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_03770 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL543_03785 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_03785 SM00387 Histidine kinase-like ATPases AL543_03790 SM00421 helix_turn_helix, Lux Regulon AL543_03790 SM00448 cheY-homologous receiver domain AL543_03805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_03805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_03825 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_03870 SM00563 Phosphate acyltransferases AL543_03895 SM00450 Rhodanese Homology Domain AL543_03905 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL543_03930 SM01321 AL543_03930 AL543_04010 SM00861 Transketolase, pyrimidine binding domain AL543_04030 SM00636 AL543_04030 AL543_04035 SM00450 Rhodanese Homology Domain AL543_04050 SM00852 Probable molybdopterin binding domain AL543_04125 SM00382 ATPases associated with a variety of cellular activities AL543_04135 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL543_04135 SM00866 AL543_04135 AL543_04185 SM00382 ATPases associated with a variety of cellular activities AL543_04255 SM00881 CoA binding domain AL543_04285 SM00382 ATPases associated with a variety of cellular activities AL543_04290 SM00382 ATPases associated with a variety of cellular activities AL543_04315 SM00822 AL543_04315 AL543_04315 SM00823 Phosphopantetheine attachment site AL543_04315 SM00825 Beta-ketoacyl synthase AL543_04315 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AL543_04320 SM00823 Phosphopantetheine attachment site AL543_04335 SM00342 helix_turn_helix, arabinose operon control protein AL543_04340 SM00342 helix_turn_helix, arabinose operon control protein AL543_04365 SM00530 Helix-turn-helix XRE-family like proteins AL543_04390 SM00530 Helix-turn-helix XRE-family like proteins AL543_04410 SM00448 cheY-homologous receiver domain AL543_04410 SM00862 Transcriptional regulatory protein, C terminal AL543_04415 SM00387 Histidine kinase-like ATPases AL543_04415 SM00388 His Kinase A (phosphoacceptor) domain AL543_04425 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL543_04425 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL543_04440 SM00267 diguanylate cyclase AL543_04460 SM00062 Bacterial periplasmic substrate-binding proteins AL543_04460 SM00267 diguanylate cyclase AL543_04495 SM00782 PhnA Zinc-Ribbon AL543_04530 SM00116 Domain in cystathionine beta-synthase and other proteins. AL543_04535 SM00867 YceI-like domain AL543_04550 SM00052 Putative diguanylate phosphodiesterase AL543_04555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_04555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_04560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_04560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_04590 SM01130 AL543_04590 AL543_04655 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL543_04680 SM00387 Histidine kinase-like ATPases AL543_04680 SM00448 cheY-homologous receiver domain AL543_04695 SM00354 helix_turn _helix lactose operon repressor AL543_04715 SM00052 Putative diguanylate phosphodiesterase AL543_04745 SM00342 helix_turn_helix, arabinose operon control protein AL543_04835 SM00360 RNA recognition motif AL543_04955 SM00360 RNA recognition motif AL543_05270 SM01266 AL543_05270 AL543_05280 SM00530 Helix-turn-helix XRE-family like proteins AL543_05335 SM01040 BRO family, N-terminal domain AL543_05395 SM01022 AL543_05395 AL543_05525 SM01022 AL543_05525 AL543_05630 SM01321 AL543_05630 AL543_05650 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL543_05660 SM00530 Helix-turn-helix XRE-family like proteins AL543_05685 SM01057 Eukaryotic-type carbonic anhydrase AL543_05700 SM00936 Penicillin-binding protein 5, C-terminal domain AL543_05705 SM00346 helix_turn_helix isocitrate lyase regulation AL543_05710 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_05715 SM00382 ATPases associated with a variety of cellular activities AL543_05755 SM00267 diguanylate cyclase AL543_05815 SM00342 helix_turn_helix, arabinose operon control protein AL543_05835 SM00924 MgtE intracellular N domain AL543_05860 SM00342 helix_turn_helix, arabinose operon control protein AL543_05860 SM00871 Bacterial transcription activator, effector binding domain AL543_05865 SM00342 helix_turn_helix, arabinose operon control protein AL543_05915 SM01266 AL543_05915 AL543_05920 SM01091 Transporter associated domain AL543_05935 SM00052 Putative diguanylate phosphodiesterase AL543_05935 SM00267 diguanylate cyclase AL543_05940 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL543_05960 SM00267 diguanylate cyclase AL543_05970 SM00448 cheY-homologous receiver domain AL543_05970 SM00850 LytTr DNA-binding domain AL543_05975 SM00387 Histidine kinase-like ATPases AL543_05995 SM00382 ATPases associated with a variety of cellular activities AL543_06010 SM00642 Alpha-amylase domain AL543_06095 SM00935 Outer membrane protein (OmpH-like) AL543_06105 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL543_06150 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_06205 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL543_06255 SM00267 diguanylate cyclase AL543_06300 SM00900 AL543_06300 AL543_06350 SM00464 Found in ATP-dependent protease La (LON) AL543_06385 SM00925 MltA specific insert domain AL543_06445 SM01321 AL543_06445 AL543_06480 SM00354 helix_turn _helix lactose operon repressor AL543_06490 SM01038 Beta galactosidase small chain AL543_06520 SM00838 Elongation factor G C-terminus AL543_06520 SM00889 Elongation factor G, domain IV AL543_06525 SM00382 ATPases associated with a variety of cellular activities AL543_06565 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AL543_06570 SM01133 AL543_06570 AL543_06610 SM00986 Uracil DNA glycosylase superfamily AL543_06610 SM00987 UreE urease accessory protein, C-terminal domain AL543_06615 SM00518 AP endonuclease family 2 AL543_06655 SM00448 cheY-homologous receiver domain AL543_06655 SM00862 Transcriptional regulatory protein, C terminal AL543_06660 SM00073 Histidine Phosphotransfer domain AL543_06660 SM00091 PAS domain AL543_06660 SM00387 Histidine kinase-like ATPases AL543_06660 SM00388 His Kinase A (phosphoacceptor) domain AL543_06660 SM00448 cheY-homologous receiver domain AL543_06665 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL543_06665 SM00091 PAS domain AL543_06665 SM00267 diguanylate cyclase AL543_06670 SM00729 Elongator protein 3, MiaB family, Radical SAM AL543_06730 SM00851 MGS-like domain AL543_06730 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL543_06735 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AL543_06755 SM00957 SecA DEAD-like domain AL543_06755 SM00958 SecA preprotein cross-linking domain AL543_06780 SM00864 Tubulin/FtsZ family, GTPase domain AL543_06780 SM00865 Tubulin/FtsZ family, C-terminal domain AL543_06785 SM00842 Cell division protein FtsA AL543_06865 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL543_06865 SM00895 AL543_06865 AL543_06875 SM01131 AL543_06875 AL543_06900 SM00644 AL543_06900 AL543_06945 SM00434 DNA Topoisomerase IV AL543_06950 SM00387 Histidine kinase-like ATPases AL543_06950 SM00433 TopoisomeraseII AL543_06990 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_06990 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_07000 SM00880 AL543_07000 AL543_07000 SM01118 AL543_07000 AL543_07015 SM00287 Bacterial SH3 domain homologues AL543_07025 SM00382 ATPases associated with a variety of cellular activities AL543_07050 SM01192 AL543_07050 AL543_07050 SM01193 AL543_07050 AL543_07070 SM00954 Region found in RelA / SpoT proteins AL543_07080 SM00073 Histidine Phosphotransfer domain AL543_07080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_07080 SM00387 Histidine kinase-like ATPases AL543_07080 SM00388 His Kinase A (phosphoacceptor) domain AL543_07080 SM00448 cheY-homologous receiver domain AL543_07085 SM00267 diguanylate cyclase AL543_07120 SM00358 Double-stranded RNA binding motif AL543_07120 SM00535 Ribonuclease III family AL543_07250 SM00014 Acid phosphatase homologues AL543_07260 SM00917 LeuA allosteric (dimerisation) domain AL543_07265 SM01329 AL543_07265 AL543_07335 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_07405 SM00487 DEAD-like helicases superfamily AL543_07405 SM00490 helicase superfamily c-terminal domain AL543_07415 SM00670 Large family of predicted nucleotide-binding domains AL543_07440 SM00563 Phosphate acyltransferases AL543_07475 SM00382 ATPases associated with a variety of cellular activities AL543_07490 SM00116 Domain in cystathionine beta-synthase and other proteins. AL543_07510 SM00382 ATPases associated with a variety of cellular activities AL543_07540 SM00924 MgtE intracellular N domain AL543_07555 SM00382 ATPases associated with a variety of cellular activities AL543_07635 SM00382 ATPases associated with a variety of cellular activities AL543_07685 SM00487 DEAD-like helicases superfamily AL543_07685 SM00490 helicase superfamily c-terminal domain AL543_07720 SM00662 RNA polymerases D AL543_07725 SM00363 S4 RNA-binding domain AL543_07725 SM01390 AL543_07725 AL543_07790 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL543_07795 SM01374 AL543_07795 AL543_07815 SM00322 K homology RNA-binding domain AL543_07830 SM01382 AL543_07830 AL543_07830 SM01383 AL543_07830 AL543_07850 SM01403 AL543_07850 AL543_07855 SM00967 RNA 2'-O ribose methyltransferase substrate binding AL543_07860 SM00316 Ribosomal protein S1-like RNA-binding domain AL543_07860 SM00357 Cold shock protein domain AL543_07860 SM00955 AL543_07860 AL543_07870 SM00671 Sel1-like repeats. AL543_07875 SM00788 Adenylosuccinate synthetase AL543_07905 SM00382 ATPases associated with a variety of cellular activities AL543_07930 SM00100 Cyclic nucleotide-monophosphate binding domain AL543_07930 SM00419 helix_turn_helix, cAMP Regulatory protein AL543_07935 SM01150 AL543_07935 AL543_07960 SM00729 Elongator protein 3, MiaB family, Radical SAM AL543_08010 SM00965 Secretin and TonB N terminus short domain AL543_08075 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL543_08095 SM00971 Serine acetyltransferase, N-terminal AL543_08110 SM00450 Rhodanese Homology Domain AL543_08140 SM00841 Elongation factor P, C-terminal AL543_08140 SM01185 AL543_08140 AL543_08170 SM00883 Chaperonin 10 Kd subunit AL543_08215 SM00382 ATPases associated with a variety of cellular activities AL543_08215 SM01086 C-terminal, D2-small domain, of ClpB protein AL543_08230 SM00354 helix_turn _helix lactose operon repressor AL543_08235 SM00487 DEAD-like helicases superfamily AL543_08235 SM00490 helicase superfamily c-terminal domain AL543_08245 SM00919 Malic enzyme, NAD binding domain AL543_08245 SM01274 AL543_08245 AL543_08295 SM00448 cheY-homologous receiver domain AL543_08295 SM00862 Transcriptional regulatory protein, C terminal AL543_08300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_08300 SM00387 Histidine kinase-like ATPases AL543_08300 SM00388 His Kinase A (phosphoacceptor) domain AL543_08335 SM00421 helix_turn_helix, Lux Regulon AL543_08335 SM00448 cheY-homologous receiver domain AL543_08340 SM01091 Transporter associated domain AL543_08360 SM00072 Guanylate kinase homologues. AL543_08365 SM01409 AL543_08365 AL543_08370 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_08370 SM00954 Region found in RelA / SpoT proteins AL543_08375 SM00487 DEAD-like helicases superfamily AL543_08375 SM00490 helicase superfamily c-terminal domain AL543_08385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_08385 SM00387 Histidine kinase-like ATPases AL543_08385 SM00388 His Kinase A (phosphoacceptor) domain AL543_08390 SM00448 cheY-homologous receiver domain AL543_08390 SM00862 Transcriptional regulatory protein, C terminal AL543_08405 SM00382 ATPases associated with a variety of cellular activities AL543_08415 SM00421 helix_turn_helix, Lux Regulon AL543_08425 SM00316 Ribosomal protein S1-like RNA-binding domain AL543_08425 SM00732 Likely ribonuclease with RNase H fold. AL543_08505 SM00382 ATPases associated with a variety of cellular activities AL543_08520 SM00363 S4 RNA-binding domain AL543_08570 SM01230 AL543_08570 AL543_08580 SM00091 PAS domain AL543_08580 SM00387 Histidine kinase-like ATPases AL543_08580 SM00388 His Kinase A (phosphoacceptor) domain AL543_08585 SM00382 ATPases associated with a variety of cellular activities AL543_08585 SM00448 cheY-homologous receiver domain AL543_08590 SM00052 Putative diguanylate phosphodiesterase AL543_08590 SM00267 diguanylate cyclase AL543_08675 SM00360 RNA recognition motif AL543_08765 SM00487 DEAD-like helicases superfamily AL543_08800 SM00382 ATPases associated with a variety of cellular activities AL543_08805 SM00382 ATPases associated with a variety of cellular activities AL543_08805 SM00962 SRP54-type protein, GTPase domain AL543_08805 SM00963 SRP54-type protein, helical bundle domain AL543_08875 SM01144 AL543_08875 AL543_08880 SM00052 Putative diguanylate phosphodiesterase AL543_08880 SM00267 diguanylate cyclase AL543_08880 SM00897 FIST N domain AL543_08880 SM01204 AL543_08880 AL543_08915 SM01219 AL543_08915 AL543_08950 SM00729 Elongator protein 3, MiaB family, Radical SAM AL543_08985 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL543_08985 SM00474 3'-5' exonuclease AL543_08985 SM00475 5'-3' exonuclease AL543_08985 SM00482 DNA polymerase A domain AL543_08995 SM01004 Delta-aminolevulinic acid dehydratase AL543_09010 SM00450 Rhodanese Homology Domain AL543_09040 SM00563 Phosphate acyltransferases AL543_09100 SM00091 PAS domain AL543_09100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_09150 SM00382 ATPases associated with a variety of cellular activities AL543_09215 SM00052 Putative diguanylate phosphodiesterase AL543_09215 SM00091 PAS domain AL543_09215 SM00267 diguanylate cyclase AL543_09220 SM00344 helix_turn_helix ASNC type AL543_09245 SM00876 Biotin and Thiamin Synthesis associated domain AL543_09460 SM00382 ATPases associated with a variety of cellular activities AL543_09500 SM00470 ParB-like nuclease domain AL543_09515 SM01228 AL543_09515 AL543_09545 SM01234 AL543_09545 AL543_09560 SM00382 ATPases associated with a variety of cellular activities AL543_09570 SM00062 Bacterial periplasmic substrate-binding proteins AL543_09570 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL543_09575 SM00382 ATPases associated with a variety of cellular activities AL543_09575 SM00760 Bacterial dnaA protein helix-turn-helix domain AL543_09580 SM00480 DNA polymerase III beta subunit AL543_09590 SM00387 Histidine kinase-like ATPases AL543_09590 SM00433 TopoisomeraseII AL543_09650 SM00829 Enoylreductase AL543_09680 SM00382 ATPases associated with a variety of cellular activities AL543_09685 SM00563 Phosphate acyltransferases AL543_09755 SM00257 Lysin motif AL543_09780 SM01001 AIR carboxylase AL543_09920 SM00382 ATPases associated with a variety of cellular activities AL543_09960 SM00530 Helix-turn-helix XRE-family like proteins AL543_10065 SM00342 helix_turn_helix, arabinose operon control protein AL543_10080 SM00341 Helicase and RNase D C-terminal AL543_10080 SM00487 DEAD-like helicases superfamily AL543_10080 SM00490 helicase superfamily c-terminal domain AL543_10080 SM00956 AL543_10080 AL543_10100 SM00382 ATPases associated with a variety of cellular activities AL543_10205 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AL543_10205 SM01232 AL543_10205 AL543_10370 SM00986 Uracil DNA glycosylase superfamily AL543_10370 SM00987 UreE urease accessory protein, C-terminal domain AL543_10390 SM00411 bacterial (prokaryotic) histone like domain AL543_10400 SM01209 AL543_10400 AL543_10400 SM01210 AL543_10400 AL543_10405 SM00798 AICARFT/IMPCHase bienzyme AL543_10405 SM00851 MGS-like domain AL543_10410 SM00422 helix_turn_helix, mercury resistance AL543_10415 SM00862 Transcriptional regulatory protein, C terminal AL543_10430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_10430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_10430 SM01049 AL543_10430 AL543_10465 SM00354 helix_turn _helix lactose operon repressor AL543_10485 SM00878 Biotin carboxylase C-terminal domain AL543_10505 SM00479 AL543_10505 AL543_10510 SM00116 Domain in cystathionine beta-synthase and other proteins. AL543_10525 SM00387 Histidine kinase-like ATPases AL543_10525 SM00388 His Kinase A (phosphoacceptor) domain AL543_10525 SM00448 cheY-homologous receiver domain AL543_10545 SM00487 DEAD-like helicases superfamily AL543_10545 SM00490 helicase superfamily c-terminal domain AL543_10555 SM00357 Cold shock protein domain AL543_10555 SM00382 ATPases associated with a variety of cellular activities AL543_10555 SM00959 Rho termination factor, N-terminal domain AL543_10620 SM00155 Phospholipase D. Active site motifs. AL543_10680 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL543_10680 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL543_10685 SM00649 Ribosomal protein L11/L12 AL543_10710 SM00663 RNA polymerase I subunit A N-terminus AL543_10770 SM00479 AL543_10770 AL543_10825 SM00257 Lysin motif AL543_10825 SM00646 AL543_10825 AL543_10830 SM00853 MutL C terminal dimerisation domain AL543_10830 SM01340 AL543_10830 AL543_10850 SM00244 prohibitin homologues AL543_10855 SM00244 prohibitin homologues AL543_10870 SM00320 WD40 repeats AL543_10910 SM00838 Elongation factor G C-terminus AL543_10910 SM00889 Elongation factor G, domain IV AL543_10960 SM01005 Alanine racemase, C-terminal domain AL543_11095 SM01018 B12 binding domain AL543_11125 SM00421 helix_turn_helix, Lux Regulon AL543_11135 SM00052 Putative diguanylate phosphodiesterase AL543_11135 SM00267 diguanylate cyclase AL543_11155 SM00965 Secretin and TonB N terminus short domain AL543_11165 SM00028 Tetratricopeptide repeats AL543_11170 SM00382 ATPases associated with a variety of cellular activities AL543_11240 SM00316 Ribosomal protein S1-like RNA-binding domain AL543_11285 SM01119 AL543_11285 AL543_11410 SM00650 Ribosomal RNA adenine dimethylases AL543_11430 SM00271 DnaJ molecular chaperone homology domain AL543_11460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_11460 SM01049 AL543_11460 AL543_11495 SM00478 endonuclease III AL543_11495 SM00525 AL543_11495 AL543_11510 SM00478 endonuclease III AL543_11515 SM00729 Elongator protein 3, MiaB family, Radical SAM AL543_11530 SM01152 AL543_11530 AL543_11560 SM00421 helix_turn_helix, Lux Regulon AL543_11565 SM00363 S4 RNA-binding domain AL543_11570 SM00732 Likely ribonuclease with RNase H fold. AL543_11595 SM00731 SprT homologues. AL543_11610 SM00861 Transketolase, pyrimidine binding domain AL543_11625 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL543_11645 SM01321 AL543_11645 AL543_11670 SM00420 helix_turn_helix, Deoxyribose operon repressor AL543_11670 SM01134 AL543_11670 AL543_11685 SM00563 Phosphate acyltransferases AL543_11700 SM00400 zinc finger AL543_11700 SM00493 AL543_11700 AL543_11700 SM00766 DNA primase DnaG DnaB-binding AL543_11725 SM01207 AL543_11725 AL543_11735 SM00905 Dihydroneopterin aldolase AL543_11780 SM00257 Lysin motif AL543_11790 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AL543_11790 SM00534 ATPase domain of DNA mismatch repair MUTS family AL543_11815 SM00382 ATPases associated with a variety of cellular activities AL543_11825 SM00382 ATPases associated with a variety of cellular activities AL543_11835 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL543_11905 SM00829 Enoylreductase AL543_11930 SM01091 Transporter associated domain AL543_11940 SM00382 ATPases associated with a variety of cellular activities AL543_11940 SM00962 SRP54-type protein, GTPase domain AL543_11940 SM00963 SRP54-type protein, helical bundle domain AL543_11965 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL543_11970 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL543_12025 SM00749 bacterial OsmY and nodulation domain AL543_12060 SM00947 Carbonic anhydrase AL543_12070 SM00382 ATPases associated with a variety of cellular activities AL543_12115 SM00487 DEAD-like helicases superfamily AL543_12115 SM00490 helicase superfamily c-terminal domain AL543_12115 SM00847 Helicase associated domain (HA2) Add an annotation AL543_12140 SM00938 Nitrogen regulatory protein P-II AL543_12160 SM00382 ATPases associated with a variety of cellular activities AL543_12170 SM01068 Putative carbohydrate binding domain AL543_12190 SM00382 ATPases associated with a variety of cellular activities AL543_12195 SM00382 ATPases associated with a variety of cellular activities AL543_12215 SM00091 PAS domain AL543_12215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_12215 SM00387 Histidine kinase-like ATPases AL543_12215 SM00388 His Kinase A (phosphoacceptor) domain AL543_12215 SM00448 cheY-homologous receiver domain AL543_12265 SM00363 S4 RNA-binding domain AL543_12285 SM01103 AL543_12285 AL543_12295 SM00382 ATPases associated with a variety of cellular activities AL543_12335 SM00316 Ribosomal protein S1-like RNA-binding domain AL543_12335 SM00322 K homology RNA-binding domain AL543_12355 SM01387 AL543_12355 AL543_12360 SM00316 Ribosomal protein S1-like RNA-binding domain AL543_12360 SM00322 K homology RNA-binding domain AL543_12365 SM00028 Tetratricopeptide repeats AL543_12370 SM00347 helix_turn_helix multiple antibiotic resistance protein AL543_12390 SM00052 Putative diguanylate phosphodiesterase AL543_12390 SM00091 PAS domain AL543_12390 SM00267 diguanylate cyclase AL543_12415 SM00052 Putative diguanylate phosphodiesterase AL543_12415 SM00267 diguanylate cyclase AL543_12425 SM00487 DEAD-like helicases superfamily AL543_12425 SM00490 helicase superfamily c-terminal domain AL543_12450 SM00382 ATPases associated with a variety of cellular activities AL543_12475 SM00927 DNA mismatch repair enzyme MutH AL543_12485 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL543_12520 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL543_12535 SM00904 Riboflavin kinase AL543_12590 SM00448 cheY-homologous receiver domain AL543_12590 SM00850 LytTr DNA-binding domain AL543_12605 SM00830 Chorismate mutase type II AL543_12615 SM00382 ATPases associated with a variety of cellular activities AL543_12635 SM00052 Putative diguanylate phosphodiesterase AL543_12635 SM00267 diguanylate cyclase AL543_12645 SM00830 Chorismate mutase type II AL543_12655 SM01321 AL543_12655 AL543_12665 SM00363 S4 RNA-binding domain AL543_12675 SM00382 ATPases associated with a variety of cellular activities AL543_12675 SM01086 C-terminal, D2-small domain, of ClpB protein AL543_12785 SM00448 cheY-homologous receiver domain AL543_12785 SM00862 Transcriptional regulatory protein, C terminal AL543_12830 SM00448 cheY-homologous receiver domain AL543_12830 SM00862 Transcriptional regulatory protein, C terminal AL543_12835 SM00091 PAS domain AL543_12835 SM00387 Histidine kinase-like ATPases AL543_12835 SM00388 His Kinase A (phosphoacceptor) domain AL543_12865 SM00382 ATPases associated with a variety of cellular activities AL543_12905 SM00116 Domain in cystathionine beta-synthase and other proteins. AL543_12925 SM01323 AL543_12925 AL543_12970 SM00271 DnaJ molecular chaperone homology domain AL543_12995 SM00562 AL543_12995 AL543_13005 SM00530 Helix-turn-helix XRE-family like proteins AL543_13025 SM00564 beta-propeller repeat AL543_13050 SM00116 Domain in cystathionine beta-synthase and other proteins. AL543_13050 SM01240 AL543_13050 AL543_13170 SM00495 Chitin-binding domain type 3 AL543_13180 SM01321 AL543_13180 AL543_13220 SM00052 Putative diguanylate phosphodiesterase AL543_13230 SM00448 cheY-homologous receiver domain AL543_13235 SM00091 PAS domain AL543_13235 SM00387 Histidine kinase-like ATPases AL543_13260 SM00764 Citrate lyase ligase C-terminal domain AL543_13345 SM00487 DEAD-like helicases superfamily AL543_13345 SM00490 helicase superfamily c-terminal domain AL543_13425 SM00271 DnaJ molecular chaperone homology domain AL543_13475 SM00062 Bacterial periplasmic substrate-binding proteins AL543_13485 SM01211 AL543_13485 AL543_13565 SM00861 Transketolase, pyrimidine binding domain AL543_13590 SM00981 AL543_13590 AL543_13610 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL543_13610 SM00475 5'-3' exonuclease AL543_13620 SM00267 diguanylate cyclase AL543_13625 SM00028 Tetratricopeptide repeats AL543_13655 SM00382 ATPases associated with a variety of cellular activities AL543_13655 SM00930 AL543_13655 AL543_13665 SM00354 helix_turn _helix lactose operon repressor AL543_13675 SM00642 Alpha-amylase domain AL543_13680 SM00448 cheY-homologous receiver domain AL543_13680 SM00862 Transcriptional regulatory protein, C terminal AL543_13685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_13685 SM00387 Histidine kinase-like ATPases AL543_13685 SM00388 His Kinase A (phosphoacceptor) domain AL543_13730 SM00226 Low molecular weight phosphatase family AL543_13740 SM00984 UDP binding domain AL543_13795 SM00710 Parallel beta-helix repeats AL543_13860 SM00729 Elongator protein 3, MiaB family, Radical SAM AL543_13875 SM00936 Penicillin-binding protein 5, C-terminal domain AL543_13930 SM00116 Domain in cystathionine beta-synthase and other proteins. AL543_13930 SM01091 Transporter associated domain AL543_13945 SM00729 Elongator protein 3, MiaB family, Radical SAM AL543_13985 SM00771 ZipA, C-terminal domain (FtsZ-binding) AL543_13990 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL543_13990 SM00292 breast cancer carboxy-terminal domain AL543_13990 SM00532 Ligase N family AL543_14005 SM00422 helix_turn_helix, mercury resistance AL543_14020 SM00244 prohibitin homologues AL543_14055 SM00862 Transcriptional regulatory protein, C terminal AL543_14060 SM00387 Histidine kinase-like ATPases AL543_14080 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL543_14155 SM00479 AL543_14155 AL543_14175 SM00478 endonuclease III AL543_14175 SM00525 AL543_14175 AL543_14185 SM00900 AL543_14185 AL543_14210 SM01321 AL543_14210 AL543_14220 SM00487 DEAD-like helicases superfamily AL543_14220 SM00490 helicase superfamily c-terminal domain AL543_14225 SM00382 ATPases associated with a variety of cellular activities AL543_14225 SM00448 cheY-homologous receiver domain AL543_14240 SM00729 Elongator protein 3, MiaB family, Radical SAM AL543_14245 SM00852 Probable molybdopterin binding domain AL543_14275 SM00116 Domain in cystathionine beta-synthase and other proteins. AL543_14325 SM00226 Low molecular weight phosphatase family AL543_14370 SM00448 cheY-homologous receiver domain AL543_14390 SM00382 ATPases associated with a variety of cellular activities AL543_14400 SM00493 AL543_14400 AL543_14430 SM00344 helix_turn_helix ASNC type AL543_14455 SM00062 Bacterial periplasmic substrate-binding proteins AL543_14455 SM00267 diguanylate cyclase AL543_14475 SM00342 helix_turn_helix, arabinose operon control protein AL543_14485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_14505 SM01006 Siderophore biosynthesis protein domain AL543_14525 SM00382 ATPases associated with a variety of cellular activities AL543_14540 SM00347 helix_turn_helix multiple antibiotic resistance protein AL543_14560 SM00460 Transglutaminase/protease-like homologues AL543_14590 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL543_14595 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL543_14610 SM00420 helix_turn_helix, Deoxyribose operon repressor AL543_14610 SM01134 AL543_14610 AL543_14615 SM00420 helix_turn_helix, Deoxyribose operon repressor AL543_14615 SM01134 AL543_14615 AL543_14680 SM00495 Chitin-binding domain type 3 AL543_14680 SM00636 AL543_14680 AL543_14695 SM00342 helix_turn_helix, arabinose operon control protein AL543_14715 SM00073 Histidine Phosphotransfer domain AL543_14720 SM00448 cheY-homologous receiver domain AL543_14725 SM00448 cheY-homologous receiver domain AL543_14735 SM00387 Histidine kinase-like ATPases AL543_14735 SM00388 His Kinase A (phosphoacceptor) domain AL543_14740 SM00387 Histidine kinase-like ATPases AL543_14745 SM00052 Putative diguanylate phosphodiesterase AL543_14745 SM00448 cheY-homologous receiver domain AL543_14750 SM00448 cheY-homologous receiver domain AL543_14755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_14755 SM00387 Histidine kinase-like ATPases AL543_14780 SM00382 ATPases associated with a variety of cellular activities AL543_14785 SM00382 ATPases associated with a variety of cellular activities AL543_14825 SM00382 ATPases associated with a variety of cellular activities AL543_14830 SM00267 diguanylate cyclase AL543_14850 SM00382 ATPases associated with a variety of cellular activities AL543_14865 SM00729 Elongator protein 3, MiaB family, Radical SAM AL543_14865 SM00876 Biotin and Thiamin Synthesis associated domain AL543_14955 SM00528 Domain in histone-like proteins of HNS family AL543_15015 SM00357 Cold shock protein domain AL543_15025 SM00382 ATPases associated with a variety of cellular activities AL543_15025 SM01086 C-terminal, D2-small domain, of ClpB protein AL543_15090 SM00448 cheY-homologous receiver domain AL543_15095 SM00100 Cyclic nucleotide-monophosphate binding domain AL543_15095 SM00387 Histidine kinase-like ATPases AL543_15195 SM00481 DNA polymerase alpha chain like domain AL543_15205 SM00363 S4 RNA-binding domain AL543_15210 SM00382 ATPases associated with a variety of cellular activities AL543_15215 SM00382 ATPases associated with a variety of cellular activities AL543_15235 SM00267 diguanylate cyclase AL543_15250 SM00919 Malic enzyme, NAD binding domain AL543_15250 SM01274 AL543_15250 AL543_15275 SM00671 Sel1-like repeats. AL543_15305 SM00020 Trypsin-like serine protease AL543_15335 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL543_15335 SM00866 AL543_15335 AL543_15350 SM00841 Elongation factor P, C-terminal AL543_15350 SM01185 AL543_15350 AL543_15360 SM00052 Putative diguanylate phosphodiesterase AL543_15365 SM00486 DNA polymerase type-B family AL543_15370 SM00421 helix_turn_helix, Lux Regulon AL543_15370 SM00448 cheY-homologous receiver domain AL543_15375 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL543_15375 SM00465 GIY-YIG type nucleases (URI domain) AL543_15405 SM01321 AL543_15405 AL543_15430 SM00873 B3/4 domain AL543_15430 SM00874 tRNA synthetase B5 domain AL543_15430 SM00896 Ferredoxin-fold anticodon binding domain AL543_15435 SM00411 bacterial (prokaryotic) histone like domain AL543_15485 SM00479 AL543_15485 AL543_15515 SM00855 Phosphoglycerate mutase family AL543_15530 SM00382 ATPases associated with a variety of cellular activities AL543_15545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_15545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_15545 SM01049 AL543_15545 AL543_15560 SM00852 Probable molybdopterin binding domain AL543_15590 SM00434 DNA Topoisomerase IV AL543_15640 SM00357 Cold shock protein domain AL543_15645 SM00450 Rhodanese Homology Domain AL543_15650 SM00342 helix_turn_helix, arabinose operon control protein AL543_15705 SM00849 Metallo-beta-lactamase superfamily AL543_15735 SM00387 Histidine kinase-like ATPases AL543_15735 SM01049 AL543_15735 AL543_15740 SM00421 helix_turn_helix, Lux Regulon AL543_15740 SM00448 cheY-homologous receiver domain AL543_15745 SM00347 helix_turn_helix multiple antibiotic resistance protein AL543_15755 SM00495 Chitin-binding domain type 3 AL543_15785 SM00354 helix_turn _helix lactose operon repressor AL543_15800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_15800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_15805 SM00479 AL543_15805 AL543_15810 SM00100 Cyclic nucleotide-monophosphate binding domain AL543_15810 SM00116 Domain in cystathionine beta-synthase and other proteins. AL543_15820 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_15820 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_15840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_15840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_15890 SM00091 PAS domain AL543_15890 SM00382 ATPases associated with a variety of cellular activities AL543_15915 SM01005 Alanine racemase, C-terminal domain AL543_15920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_15920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_15930 SM00387 Histidine kinase-like ATPases AL543_15935 SM00448 cheY-homologous receiver domain AL543_15950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_15950 SM00387 Histidine kinase-like ATPases AL543_15950 SM00388 His Kinase A (phosphoacceptor) domain AL543_15955 SM00448 cheY-homologous receiver domain AL543_15955 SM00862 Transcriptional regulatory protein, C terminal AL543_15990 SM00382 ATPases associated with a variety of cellular activities AL543_16030 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL543_16030 SM00895 AL543_16030 AL543_16095 SM00448 cheY-homologous receiver domain AL543_16095 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_16100 SM00073 Histidine Phosphotransfer domain AL543_16100 SM00091 PAS domain AL543_16100 SM00387 Histidine kinase-like ATPases AL543_16100 SM00388 His Kinase A (phosphoacceptor) domain AL543_16100 SM00448 cheY-homologous receiver domain AL543_16115 SM00267 diguanylate cyclase AL543_16120 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL543_16125 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_16145 SM00382 ATPases associated with a variety of cellular activities AL543_16160 SM00062 Bacterial periplasmic substrate-binding proteins AL543_16185 SM00028 Tetratricopeptide repeats AL543_16185 SM00267 diguanylate cyclase AL543_16200 SM00267 diguanylate cyclase AL543_16210 SM00267 diguanylate cyclase AL543_16230 SM00267 diguanylate cyclase AL543_16230 SM01079 AL543_16230 AL543_16235 SM00479 AL543_16235 AL543_16260 SM00382 ATPases associated with a variety of cellular activities AL543_16260 SM00487 DEAD-like helicases superfamily AL543_16260 SM00490 helicase superfamily c-terminal domain AL543_16260 SM00847 Helicase associated domain (HA2) Add an annotation AL543_16330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_16330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_16335 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL543_16335 SM00091 PAS domain AL543_16335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_16340 SM00487 DEAD-like helicases superfamily AL543_16340 SM00490 helicase superfamily c-terminal domain AL543_16345 SM00342 helix_turn_helix, arabinose operon control protein AL543_16395 SM00903 Flavin reductase like domain AL543_16400 SM00347 helix_turn_helix multiple antibiotic resistance protein AL543_16465 SM00342 helix_turn_helix, arabinose operon control protein AL543_16525 SM00267 diguanylate cyclase AL543_16530 SM00387 Histidine kinase-like ATPases AL543_16530 SM00388 His Kinase A (phosphoacceptor) domain AL543_16530 SM00448 cheY-homologous receiver domain AL543_16535 SM00897 FIST N domain AL543_16535 SM01204 AL543_16535 AL543_16540 SM00421 helix_turn_helix, Lux Regulon AL543_16540 SM00448 cheY-homologous receiver domain AL543_16570 SM00382 ATPases associated with a variety of cellular activities AL543_16605 SM00100 Cyclic nucleotide-monophosphate binding domain AL543_16605 SM00419 helix_turn_helix, cAMP Regulatory protein AL543_16655 SM00897 FIST N domain AL543_16655 SM01204 AL543_16655 AL543_16660 SM00387 Histidine kinase-like ATPases AL543_16660 SM00388 His Kinase A (phosphoacceptor) domain AL543_16660 SM00448 cheY-homologous receiver domain AL543_16710 SM00382 ATPases associated with a variety of cellular activities AL543_16720 SM00981 AL543_16720 AL543_16755 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL543_16755 SM00245 tail specific protease AL543_16760 SM00945 ProQ/FINO family AL543_16790 SM00316 Ribosomal protein S1-like RNA-binding domain AL543_16845 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL543_16880 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_16880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_16885 SM00382 ATPases associated with a variety of cellular activities AL543_16890 SM00387 Histidine kinase-like ATPases AL543_16890 SM00388 His Kinase A (phosphoacceptor) domain AL543_16895 SM00382 ATPases associated with a variety of cellular activities AL543_16895 SM00448 cheY-homologous receiver domain AL543_16910 SM00382 ATPases associated with a variety of cellular activities AL543_16920 SM00852 Probable molybdopterin binding domain AL543_16935 SM01144 AL543_16935 AL543_16945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_17035 SM00382 ATPases associated with a variety of cellular activities AL543_17040 SM00420 helix_turn_helix, Deoxyribose operon repressor AL543_17040 SM01134 AL543_17040 AL543_17060 SM00354 helix_turn _helix lactose operon repressor AL543_17080 SM00849 Metallo-beta-lactamase superfamily AL543_17105 SM00382 ATPases associated with a variety of cellular activities AL543_17145 SM00382 ATPases associated with a variety of cellular activities AL543_17185 SM01022 AL543_17185 AL543_17195 SM00248 ankyrin repeats AL543_17200 SM01060 AL543_17200 AL543_17210 SM01276 AL543_17210 AL543_17250 SM00267 diguanylate cyclase AL543_17265 SM00260 Two component signalling adaptor domain AL543_17265 SM00448 cheY-homologous receiver domain AL543_17275 SM00448 cheY-homologous receiver domain AL543_17280 SM00387 Histidine kinase-like ATPases AL543_17320 SM00028 Tetratricopeptide repeats AL543_17320 SM00386 HAT (Half-A-TPR) repeats AL543_17410 SM00382 ATPases associated with a variety of cellular activities AL543_17435 SM00363 S4 RNA-binding domain AL543_17440 SM00487 DEAD-like helicases superfamily AL543_17440 SM00490 helicase superfamily c-terminal domain AL543_17450 SM00448 cheY-homologous receiver domain AL543_17450 SM00862 Transcriptional regulatory protein, C terminal AL543_17455 SM00387 Histidine kinase-like ATPases AL543_17465 SM00191 Integrin alpha (beta-propellor repeats). AL543_17470 SM00052 Putative diguanylate phosphodiesterase AL543_17495 SM00347 helix_turn_helix multiple antibiotic resistance protein AL543_17560 SM00448 cheY-homologous receiver domain AL543_17565 SM00052 Putative diguanylate phosphodiesterase AL543_17565 SM00421 helix_turn_helix, Lux Regulon AL543_17565 SM00448 cheY-homologous receiver domain AL543_17570 SM00062 Bacterial periplasmic substrate-binding proteins AL543_17570 SM00387 Histidine kinase-like ATPases AL543_17570 SM00388 His Kinase A (phosphoacceptor) domain AL543_17570 SM00448 cheY-homologous receiver domain AL543_17570 SM00918 Ligated ion channel L-glutamate- and glycine-binding site AL543_17575 SM00116 Domain in cystathionine beta-synthase and other proteins. AL543_17595 SM00382 ATPases associated with a variety of cellular activities AL543_17630 SM00382 ATPases associated with a variety of cellular activities AL543_17650 SM00155 Phospholipase D. Active site motifs. AL543_17665 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL543_17685 SM00382 ATPases associated with a variety of cellular activities AL543_17705 SM00382 ATPases associated with a variety of cellular activities AL543_17710 SM00382 ATPases associated with a variety of cellular activities AL543_17725 SM01131 AL543_17725 AL543_17745 SM01321 AL543_17745 AL543_17750 SM01321 AL543_17750 AL543_17800 SM00052 Putative diguanylate phosphodiesterase AL543_17800 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL543_17800 SM00267 diguanylate cyclase AL543_17850 SM00052 Putative diguanylate phosphodiesterase AL543_17850 SM00091 PAS domain AL543_17855 SM00729 Elongator protein 3, MiaB family, Radical SAM AL543_17865 SM00344 helix_turn_helix ASNC type AL543_17895 SM00448 cheY-homologous receiver domain AL543_17895 SM00862 Transcriptional regulatory protein, C terminal AL543_17905 SM00354 helix_turn _helix lactose operon repressor AL543_17940 SM01321 AL543_17940 AL543_17945 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL543_17945 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL543_17945 SM00493 AL543_17945 AL543_17975 SM00316 Ribosomal protein S1-like RNA-binding domain AL543_18030 SM00052 Putative diguanylate phosphodiesterase AL543_18055 SM00564 beta-propeller repeat AL543_18065 SM00028 Tetratricopeptide repeats AL543_18115 SM00858 AL543_18115 AL543_18140 SM00342 helix_turn_helix, arabinose operon control protein AL543_18150 SM00710 Parallel beta-helix repeats AL543_18235 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL543_18255 SM00342 helix_turn_helix, arabinose operon control protein AL543_18275 SM00387 Histidine kinase-like ATPases AL543_18275 SM00388 His Kinase A (phosphoacceptor) domain AL543_18275 SM00448 cheY-homologous receiver domain AL543_18290 SM00028 Tetratricopeptide repeats AL543_18345 SM00382 ATPases associated with a variety of cellular activities AL543_18350 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL543_18360 SM00840 AL543_18360 AL543_18375 SM00052 Putative diguanylate phosphodiesterase AL543_18400 SM00491 AL543_18400 AL543_18420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_18420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_18440 SM00062 Bacterial periplasmic substrate-binding proteins AL543_18440 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL543_18445 SM00382 ATPases associated with a variety of cellular activities AL543_18465 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_18465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_18485 SM00763 PrkA AAA domain AL543_18505 SM00448 cheY-homologous receiver domain AL543_18505 SM00862 Transcriptional regulatory protein, C terminal AL543_18510 SM00387 Histidine kinase-like ATPases AL543_18540 SM00382 ATPases associated with a variety of cellular activities AL543_18545 SM00849 Metallo-beta-lactamase superfamily AL543_18560 SM00382 ATPases associated with a variety of cellular activities AL543_18575 SM00487 DEAD-like helicases superfamily AL543_18575 SM00490 helicase superfamily c-terminal domain AL543_18575 SM00982 AL543_18575 AL543_18575 SM01058 CarD-like/TRCF domain AL543_18625 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_18625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_18635 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL543_18650 SM00843 AL543_18650 AL543_18655 SM00344 helix_turn_helix ASNC type AL543_18660 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL543_18660 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL543_18685 SM01321 AL543_18685 AL543_18700 SM00382 ATPases associated with a variety of cellular activities AL543_18705 SM00382 ATPases associated with a variety of cellular activities AL543_18765 SM00382 ATPases associated with a variety of cellular activities AL543_18765 SM00448 cheY-homologous receiver domain AL543_18830 SM00387 Histidine kinase-like ATPases AL543_18830 SM00388 His Kinase A (phosphoacceptor) domain AL543_18830 SM00448 cheY-homologous receiver domain AL543_18835 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AL543_18840 SM00028 Tetratricopeptide repeats AL543_18850 SM00411 bacterial (prokaryotic) histone like domain AL543_18855 SM00316 Ribosomal protein S1-like RNA-binding domain AL543_18865 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL543_18875 SM00411 bacterial (prokaryotic) histone like domain AL543_18880 SM00382 ATPases associated with a variety of cellular activities AL543_18880 SM00464 Found in ATP-dependent protease La (LON) AL543_18885 SM00382 ATPases associated with a variety of cellular activities AL543_18885 SM00994 ClpX C4-type zinc finger AL543_18885 SM01086 C-terminal, D2-small domain, of ClpB protein AL543_18905 SM00387 Histidine kinase-like ATPases AL543_18905 SM00388 His Kinase A (phosphoacceptor) domain AL543_18910 SM00382 ATPases associated with a variety of cellular activities AL543_18910 SM00448 cheY-homologous receiver domain AL543_18945 SM00052 Putative diguanylate phosphodiesterase AL543_18945 SM00267 diguanylate cyclase AL543_18960 SM00563 Phosphate acyltransferases AL543_18970 SM00014 Acid phosphatase homologues AL543_18985 SM00382 ATPases associated with a variety of cellular activities AL543_19045 SM00495 Chitin-binding domain type 3 AL543_19045 SM00636 AL543_19045 AL543_19095 SM00978 AL543_19095 AL543_19105 SM00563 Phosphate acyltransferases AL543_19110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_19110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_19115 SM00530 Helix-turn-helix XRE-family like proteins AL543_19130 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AL543_19160 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_19165 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_19170 SM01144 AL543_19170 AL543_19185 SM00474 3'-5' exonuclease AL543_19215 SM00487 DEAD-like helicases superfamily AL543_19215 SM00491 AL543_19215 AL543_19240 SM00870 AL543_19240 AL543_19260 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL543_19305 SM00260 Two component signalling adaptor domain AL543_19305 SM00448 cheY-homologous receiver domain AL543_19370 SM00825 Beta-ketoacyl synthase AL543_19380 SM00822 AL543_19380 AL543_19385 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AL543_19415 SM00363 S4 RNA-binding domain AL543_19425 SM00316 Ribosomal protein S1-like RNA-binding domain AL543_19460 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL543_19535 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL543_19535 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL543_19535 SM00493 AL543_19535 AL543_19605 SM00382 ATPases associated with a variety of cellular activities AL543_19615 SM00260 Two component signalling adaptor domain AL543_19620 SM00260 Two component signalling adaptor domain AL543_19630 SM00448 cheY-homologous receiver domain AL543_19635 SM00073 Histidine Phosphotransfer domain AL543_19635 SM00260 Two component signalling adaptor domain AL543_19635 SM00387 Histidine kinase-like ATPases AL543_19635 SM01231 AL543_19635 AL543_19645 SM00448 cheY-homologous receiver domain AL543_19660 SM00382 ATPases associated with a variety of cellular activities AL543_19660 SM00962 SRP54-type protein, GTPase domain AL543_19670 SM00855 Phosphoglycerate mutase family AL543_19685 SM00836 DALR anticodon binding domain AL543_19685 SM01016 Arginyl tRNA synthetase N terminal dom AL543_19705 SM00899 AL543_19705 AL543_19710 SM00342 helix_turn_helix, arabinose operon control protein AL543_19720 SM00382 ATPases associated with a variety of cellular activities AL543_19730 SM00881 CoA binding domain AL543_19745 SM00861 Transketolase, pyrimidine binding domain AL543_19835 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL543_19845 SM00825 Beta-ketoacyl synthase AL543_19890 SM00463 Small MutS-related domain AL543_19945 SM00382 ATPases associated with a variety of cellular activities AL543_19970 SM00382 ATPases associated with a variety of cellular activities AL543_19970 SM00448 cheY-homologous receiver domain AL543_19975 SM00091 PAS domain AL543_19975 SM00387 Histidine kinase-like ATPases AL543_19975 SM00388 His Kinase A (phosphoacceptor) domain AL543_19980 SM00382 ATPases associated with a variety of cellular activities AL543_20065 SM01130 AL543_20065 AL543_20080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_20080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_20095 SM00028 Tetratricopeptide repeats AL543_20155 SM00937 AL543_20155 AL543_20175 SM01400 AL543_20175 AL543_20295 SM00047 Lysozyme subfamily 2 AL543_20350 SM00138 Methyltransferase, chemotaxis proteins AL543_20355 SM00260 Two component signalling adaptor domain AL543_20355 SM00448 cheY-homologous receiver domain AL543_20360 SM00858 AL543_20360 AL543_20420 SM01081 Putative carbohydrate binding domain AL543_20440 SM00463 Small MutS-related domain AL543_20445 SM00363 S4 RNA-binding domain AL543_20520 SM00479 AL543_20520 AL543_20535 SM00849 Metallo-beta-lactamase superfamily AL543_20540 SM00257 Lysin motif AL543_20550 SM00938 Nitrogen regulatory protein P-II AL543_20560 SM00977 TilS substrate C-terminal domain