locus-tag class description VM_00005 PF00308 Bacterial dnaA protein VM_00005 PF11638 DnaA N-terminal domain VM_00005 PF08299 Bacterial dnaA protein helix-turn-helix VM_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain VM_00010 PF02767 DNA polymerase III beta subunit, central domain VM_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain VM_00015 PF02463 RecF/RecN/SMC N terminal domain VM_00020 PF00204 DNA gyrase B VM_00020 PF00986 DNA gyrase B subunit, carboxyl terminus VM_00020 PF18053 DNA gyrase B subunit insert domain VM_00020 PF01751 Toprim domain VM_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_00035 PF00011 Hsp20/alpha crystallin family VM_00040 PF00155 Aminotransferase class I and II VM_00045 PF05746 DALR anticodon binding domain VM_00045 PF02092 Glycyl-tRNA synthetase beta subunit VM_00050 PF02091 Glycyl-tRNA synthetase alpha subunit VM_00055 PF01169 Uncharacterized protein family UPF0016 VM_00065 PF01206 Sulfurtransferase TusA VM_00075 PF03466 LysR substrate binding domain VM_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_00080 PF08240 Alcohol dehydrogenase GroES-like domain VM_00080 PF00107 Zinc-binding dehydrogenase VM_00085 PF00291 Pyridoxal-phosphate dependent enzyme VM_00085 PF00585 C-terminal regulatory domain of Threonine dehydratase VM_00090 PF00920 Dehydratase family VM_00095 PF01063 Amino-transferase class IV VM_00105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VM_00105 PF00205 Thiamine pyrophosphate enzyme, central domain VM_00105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VM_00110 PF01078 Magnesium chelatase, subunit ChlI VM_00110 PF13335 Magnesium chelatase, subunit ChlI C-terminal VM_00115 PF01553 Acyltransferase VM_00120 PF01323 DSBA-like thioredoxin domain VM_00125 PF01636 Phosphotransferase enzyme family VM_00130 PF12801 4Fe-4S binding domain VM_00130 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VM_00130 PF13746 4Fe-4S dicluster domain VM_00135 PF06288 Protein of unknown function (DUF1040) VM_00145 PF07070 SpoOM protein VM_00150 PF03006 Haemolysin-III related VM_00160 PF02386 Cation transport protein VM_00165 PF02254 TrkA-N domain VM_00165 PF02080 TrkA-C domain VM_00170 PF01029 NusB family VM_00170 PF01189 16S rRNA methyltransferase RsmB/F VM_00175 PF00551 Formyl transferase VM_00175 PF02911 Formyl transferase, C-terminal domain VM_00180 PF01327 Polypeptide deformylase VM_00185 PF01476 LysM domain VM_00190 PF02481 DNA recombination-mediator protein A VM_00190 PF17782 DprA winged helix domain VM_00195 PF04361 Protein of unknown function (DUF494) VM_00200 PF01396 Topoisomerase DNA binding C4 zinc finger VM_00205 PF02222 ATP-grasp domain VM_00205 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VM_00210 PF00731 AIR carboxylase VM_00215 PF01300 Telomere recombination VM_00220 PF01218 Coproporphyrinogen III oxidase VM_00225 PF01488 Shikimate / quinate 5-dehydrogenase VM_00225 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VM_00225 PF08501 Shikimate dehydrogenase substrate binding domain VM_00235 PF00132 Bacterial transferase hexapeptide (six repeats) VM_00280 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VM_00285 PF01964 Radical SAM ThiC family VM_00285 PF13667 ThiC-associated domain VM_00290 PF02581 Thiamine monophosphate synthase VM_00295 PF00899 ThiF family VM_00300 PF02597 ThiS family VM_00305 PF05690 Thiazole biosynthesis protein ThiG VM_00310 PF04055 Radical SAM superfamily VM_00310 PF06968 Biotin and Thiamin Synthesis associated domain VM_00315 PF01321 Creatinase/Prolidase N-terminal domain VM_00315 PF00557 Metallopeptidase family M24 VM_00315 PF01321 Creatinase/Prolidase N-terminal domain VM_00315 PF00557 Metallopeptidase family M24 VM_00320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_00320 PF03466 LysR substrate binding domain VM_00325 PF07690 Major Facilitator Superfamily VM_00335 PF01037 Lrp/AsnC ligand binding domain VM_00340 PF08448 PAS fold VM_00340 PF00990 Diguanylate cyclase, GGDEF domain VM_00340 PF00563 EAL domain VM_00345 PF04445 Putative SAM-dependent methyltransferase VM_00355 PF00892 EamA-like transporter family VM_00360 PF00582 Universal stress protein family VM_00370 PF00210 Ferritin-like domain VM_00375 PF10625 Universal stress protein B (UspB) VM_00385 PF08447 PAS fold VM_00385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_00395 PF02646 RmuC family VM_00400 PF01209 ubiE/COQ5 methyltransferase family VM_00405 PF02036 SCP-2 sterol transfer family VM_00410 PF03109 ABC1 family VM_00415 PF02416 mttA/Hcf106 family VM_00420 PF02416 mttA/Hcf106 family VM_00425 PF00902 Sec-independent protein translocase protein (TatC) VM_00430 PF01554 MatE VM_00440 PF00717 Peptidase S24-like VM_00440 PF01726 LexA DNA binding domain VM_00445 PF01553 Acyltransferase VM_00450 PF01040 UbiA prenyltransferase family VM_00455 PF04345 Chorismate lyase VM_00465 PF03748 Flagellar basal body-associated protein FliL VM_00470 PF01694 Rhomboid family VM_00470 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VM_00475 PF00581 Rhodanese-like domain VM_00485 PF01026 TatD related DNase VM_00490 PF00490 Delta-aminolevulinic acid dehydratase VM_00500 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VM_00500 PF01367 5'-3' exonuclease, C-terminal SAM fold VM_00500 PF00476 DNA polymerase family A VM_00500 PF01612 3'-5' exonuclease VM_00505 PF14706 Transposase DNA-binding VM_00505 PF02281 Transposase Tn5 dimerisation domain VM_00505 PF01609 Transposase DDE domain VM_00510 PF01926 50S ribosome-binding GTPase VM_00515 PF00034 Cytochrome c VM_00525 PF04220 Der GTPase activator (YihI) VM_00530 PF10675 Protein of unknown function (DUF2489) VM_00535 PF04055 Radical SAM superfamily VM_00535 PF06969 HemN C-terminal domain VM_00540 PF07219 HemY protein N-terminus VM_00545 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VM_00550 PF02602 Uroporphyrinogen-III synthase HemD VM_00555 PF03900 Porphobilinogen deaminase, C-terminal domain VM_00555 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VM_00565 PF12633 Adenylate cyclase NT domain VM_00565 PF01295 Adenylate cyclase, class-I VM_00570 PF01491 Frataxin-like domain VM_00580 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VM_00580 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VM_00585 PF01678 Diaminopimelate epimerase VM_00590 PF04340 Protein of unknown function, DUF484 VM_00595 PF00589 Phage integrase family VM_00595 PF02899 Phage integrase, N-terminal SAM-like domain VM_00600 PF13419 Haloacid dehalogenase-like hydrolase VM_00605 PF00563 EAL domain VM_00605 PF08495 FIST N domain VM_00605 PF10442 FIST C domain VM_00605 PF00990 Diguanylate cyclase, GGDEF domain VM_00625 PF12146 Serine aminopeptidase, S33 VM_00630 PF01810 LysE type translocator VM_00635 PF08668 HDOD domain VM_00635 PF00563 EAL domain VM_00640 PF00210 Ferritin-like domain VM_00680 PF02881 SRP54-type protein, helical bundle domain VM_00680 PF00448 SRP54-type protein, GTPase domain VM_00685 PF00005 ABC transporter VM_00690 PF18075 FtsX extracellular domain VM_00695 PF00140 Sigma-70 factor, region 1.2 VM_00695 PF04542 Sigma-70 region 2 VM_00695 PF04545 Sigma-70, region 4 VM_00705 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_00705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VM_00710 PF00440 Bacterial regulatory proteins, tetR family VM_00715 PF07226 Protein of unknown function (DUF1422) VM_00720 PF05958 tRNA (Uracil-5-)-methyltransferase VM_00725 PF07715 TonB-dependent Receptor Plug Domain VM_00725 PF00593 TonB dependent receptor VM_00735 PF01177 Asp/Glu/Hydantoin racemase VM_00800 PF00962 Adenosine/AMP deaminase VM_00805 PF03707 Bacterial signalling protein N terminal repeat VM_00805 PF00990 Diguanylate cyclase, GGDEF domain VM_00805 PF13188 PAS domain VM_00805 PF00563 EAL domain VM_00810 PF02954 Bacterial regulatory protein, Fis family VM_00810 PF00072 Response regulator receiver domain VM_00810 PF00158 Sigma-54 interaction domain VM_00815 PF00512 His Kinase A (phospho-acceptor) domain VM_00815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_00815 PF00989 PAS fold VM_00825 PF00120 Glutamine synthetase, catalytic domain VM_00825 PF03951 Glutamine synthetase, beta-Grasp domain VM_00845 PF03631 Virulence factor BrkB VM_00850 PF02580 D-Tyr-tRNA(Tyr) deacylase VM_00855 PF09500 Putative thioesterase (yiiD_Cterm) VM_00855 PF00583 Acetyltransferase (GNAT) family VM_00865 PF01293 Phosphoenolpyruvate carboxykinase VM_00870 PF01430 Hsp33 protein VM_00875 PF01479 S4 domain VM_00880 PF11356 Type II secretion system protein C VM_00885 PF03958 Bacterial type II/III secretion system short domain VM_00885 PF00263 Bacterial type II and III secretion system protein VM_00890 PF00437 Type II/IV secretion system protein VM_00895 PF00482 Type II secretion system (T2SS), protein F VM_00900 PF08334 Type II secretion system (T2SS), protein G VM_00900 PF07963 Prokaryotic N-terminal methylation motif VM_00905 PF12019 Type II transport protein GspH VM_00910 PF07963 Prokaryotic N-terminal methylation motif VM_00910 PF02501 Type II secretion system (T2SS), protein I VM_00915 PF07963 Prokaryotic N-terminal methylation motif VM_00915 PF11612 Type II secretion system (T2SS), protein J VM_00920 PF03934 Type II secretion system (T2SS), protein K VM_00925 PF12693 GspL periplasmic domain VM_00925 PF05134 Type II secretion system (T2SS), protein L VM_00930 PF04612 Type II secretion system (T2SS), protein M VM_00935 PF01203 Type II secretion system (T2SS), protein N VM_00940 PF00459 Inositol monophosphatase family VM_00945 PF00293 NUDIX domain VM_00950 PF01521 Iron-sulphur cluster biosynthesis VM_00950 PF01106 NifU-like domain VM_00955 PF00156 Phosphoribosyl transferase domain VM_00960 PF00561 alpha/beta hydrolase fold VM_00970 PF16921 Tex protein YqgF-like domain VM_00970 PF17674 HHH domain VM_00970 PF00575 S1 RNA binding domain VM_00970 PF09371 Tex-like protein N-terminal domain VM_00995 PF00717 Peptidase S24-like VM_01000 PF13438 Domain of unknown function (DUF4113) VM_01000 PF00817 impB/mucB/samB family VM_01000 PF11798 IMS family HHH motif VM_01000 PF11799 impB/mucB/samB family C-terminal domain VM_01070 PF04851 Type III restriction enzyme, res subunit VM_01080 PF01272 Transcription elongation factor, GreA/GreB, C-term VM_01080 PF03449 Transcription elongation factor, N-terminal VM_01115 PF00005 ABC transporter VM_01120 PF02653 Branched-chain amino acid transport system / permease component VM_01125 PF01915 Glycosyl hydrolase family 3 C-terminal domain VM_01125 PF00933 Glycosyl hydrolase family 3 N terminal domain VM_01130 PF00704 Glycosyl hydrolases family 18 VM_01130 PF08329 Chitinase A, N-terminal domain VM_01135 PF00072 Response regulator receiver domain VM_01135 PF00486 Transcriptional regulatory protein, C terminal VM_01140 PF00512 His Kinase A (phospho-acceptor) domain VM_01140 PF00672 HAMP domain VM_01140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_01145 PF00860 Permease family VM_01150 PF17191 RecG wedge domain VM_01150 PF00270 DEAD/DEAH box helicase VM_01150 PF00271 Helicase conserved C-terminal domain VM_01155 PF02824 TGS domain VM_01155 PF04607 Region found in RelA / SpoT proteins VM_01155 PF13291 ACT domain VM_01160 PF01192 RNA polymerase Rpb6 VM_01165 PF00625 Guanylate kinase VM_01170 PF02592 Putative vitamin uptake transporter VM_01175 PF00474 Sodium:solute symporter family VM_01190 PF13693 Winged helix-turn-helix DNA-binding VM_01195 PF02914 Bacteriophage Mu transposase VM_01195 PF09299 Mu transposase, C-terminal VM_01195 PF09039 Mu DNA binding, I gamma subdomain VM_01195 PF02316 Mu DNA-binding domain VM_01200 PF09077 Mu B transposition protein, C terminal VM_01200 PF13401 AAA domain VM_01375 PF10124 Mu-like prophage major head subunit gpT VM_01385 PF07030 Protein of unknown function (DUF1320) VM_01415 PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 VM_01435 PF06890 Bacteriophage Mu Gp45 protein VM_01445 PF04865 Baseplate J-like protein VM_01450 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) VM_01465 PF03471 Transporter associated domain VM_01465 PF00999 Sodium/hydrogen exchanger family VM_01465 PF02080 TrkA-C domain VM_01470 PF00072 Response regulator receiver domain VM_01470 PF00196 Bacterial regulatory proteins, luxR family VM_01475 PF02683 Cytochrome C biogenesis protein transmembrane region VM_01475 PF11412 Disulphide bond corrector protein DsbC VM_01480 PF03605 Anaerobic c4-dicarboxylate membrane transporter VM_01485 PF10415 Fumarase C C-terminus VM_01485 PF00206 Lyase VM_01490 PF04186 FxsA cytoplasmic membrane protein VM_01495 PF00588 SpoU rRNA Methylase family VM_01500 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VM_01500 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VM_01505 PF00672 HAMP domain VM_01505 PF00512 His Kinase A (phospho-acceptor) domain VM_01505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_01505 PF16527 Two-component sensor protein CpxA, periplasmic domain VM_01510 PF00486 Transcriptional regulatory protein, C terminal VM_01510 PF00072 Response regulator receiver domain VM_01520 PF16916 Dimerisation domain of Zinc Transporter VM_01520 PF01545 Cation efflux family VM_01525 PF00365 Phosphofructokinase VM_01530 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VM_01535 PF06005 Cell division protein ZapB VM_01540 PF02219 Methylenetetrahydrofolate reductase VM_01545 PF03447 Homoserine dehydrogenase, NAD binding domain VM_01545 PF00742 Homoserine dehydrogenase VM_01545 PF00696 Amino acid kinase family VM_01550 PF01053 Cys/Met metabolism PLP-dependent enzyme VM_01555 PF01340 Met Apo-repressor, MetJ VM_01560 PF00390 Malic enzyme, N-terminal domain VM_01560 PF03949 Malic enzyme, NAD binding domain VM_01565 PF01197 Ribosomal protein L31 VM_01570 PF00271 Helicase conserved C-terminal domain VM_01570 PF17764 3′ DNA-binding domain (3′BD) VM_01570 PF00270 DEAD/DEAH box helicase VM_01570 PF18074 Primosomal protein N C-terminal domain VM_01570 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VM_01575 PF00356 Bacterial regulatory proteins, lacI family VM_01585 PF00227 Proteasome subunit VM_01590 PF00004 ATPase family associated with various cellular activities (AAA) VM_01590 PF07724 AAA domain (Cdc48 subfamily) VM_01590 PF10431 C-terminal, D2-small domain, of ClpB protein VM_01595 PF01040 UbiA prenyltransferase family VM_01600 PF03737 Aldolase/RraA VM_01610 PF00121 Triosephosphate isomerase VM_01630 PF00455 DeoR C terminal sensor domain VM_01630 PF08220 DeoR-like helix-turn-helix domain VM_01635 PF00166 Chaperonin 10 Kd subunit VM_01640 PF00118 TCP-1/cpn60 chaperonin family VM_01650 PF04055 Radical SAM superfamily VM_01655 PF01132 Elongation factor P (EF-P) OB domain VM_01655 PF08207 Elongation factor P (EF-P) KOW-like domain VM_01655 PF09285 Elongation factor P, C-terminal VM_01660 PF02313 Fumarate reductase subunit D VM_01665 PF02300 Fumarate reductase subunit C VM_01670 PF13183 4Fe-4S dicluster domain VM_01670 PF13085 2Fe-2S iron-sulfur cluster binding domain VM_01675 PF02910 Fumarate reductase flavoprotein C-term VM_01675 PF00890 FAD binding domain VM_01680 PF00152 tRNA synthetases class II (D, K and N) VM_01685 PF00581 Rhodanese-like domain VM_01690 PF02556 Preprotein translocase subunit SecB VM_01695 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VM_01695 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VM_01700 PF06426 Serine acetyltransferase, N-terminal VM_01700 PF00132 Bacterial transferase hexapeptide (six repeats) VM_01710 PF00311 Phosphoenolpyruvate carboxylase VM_01715 PF01546 Peptidase family M20/M25/M40 VM_01715 PF07687 Peptidase dimerisation domain VM_01720 PF01118 Semialdehyde dehydrogenase, NAD binding domain VM_01720 PF02774 Semialdehyde dehydrogenase, dimerisation domain VM_01725 PF00696 Amino acid kinase family VM_01730 PF00764 Arginosuccinate synthase VM_01735 PF00206 Lyase VM_01735 PF14698 Argininosuccinate lyase C-terminal VM_01750 PF00462 Glutaredoxin VM_01750 PF08534 Redoxin VM_01755 PF03466 LysR substrate binding domain VM_01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_01760 PF00905 Penicillin binding protein transpeptidase domain VM_01760 PF00912 Transglycosylase VM_01760 PF17092 Penicillin-binding protein OB-like domain VM_01785 PF07660 Secretin and TonB N terminus short domain VM_01785 PF03958 Bacterial type II/III secretion system short domain VM_01785 PF11741 AMIN domain VM_01785 PF00263 Bacterial type II and III secretion system protein VM_01790 PF01202 Shikimate kinase VM_01795 PF01761 3-dehydroquinate synthase VM_01805 PF02086 D12 class N6 adenine-specific DNA methyltransferase VM_01810 PF00834 Ribulose-phosphate 3 epimerase family VM_01815 PF13419 Haloacid dehalogenase-like hydrolase VM_01820 PF00579 tRNA synthetases class I (W and Y) VM_01835 PF00919 Uncharacterized protein family UPF0004 VM_01835 PF18693 TRAM domain VM_01835 PF04055 Radical SAM superfamily VM_01840 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_01845 PF00117 Glutamine amidotransferase class-I VM_01850 PF00202 Aminotransferase class-III VM_01855 PF04958 Arginine N-succinyltransferase beta subunit VM_01860 PF00171 Aldehyde dehydrogenase family VM_01870 PF00027 Cyclic nucleotide-binding domain VM_01870 PF13545 Crp-like helix-turn-helix domain VM_01875 PF00485 Phosphoribulokinase / Uridine kinase family VM_01880 PF06794 Uncharacterised protein family (UPF0270) VM_01885 PF00561 alpha/beta hydrolase fold VM_01895 PF00005 ABC transporter VM_01895 PF12848 ABC transporter VM_01900 PF02525 Flavodoxin-like fold VM_01905 PF02254 TrkA-N domain VM_01905 PF00999 Sodium/hydrogen exchanger family VM_01915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VM_01920 PF01112 Asparaginase VM_01925 PF00709 Adenylosuccinate synthetase VM_01930 PF08238 Sel1 repeat VM_01935 PF11893 Domain of unknown function (DUF3413) VM_01935 PF00884 Sulfatase VM_01940 PF08206 Ribonuclease B OB domain VM_01940 PF08461 Ribonuclease R winged-helix domain VM_01940 PF17876 Cold shock domain VM_01940 PF00575 S1 RNA binding domain VM_01940 PF00773 RNB domain VM_01945 PF00588 SpoU rRNA Methylase family VM_01945 PF08032 RNA 2'-O ribose methyltransferase substrate binding VM_01950 PF00338 Ribosomal protein S10p/S20e VM_01955 PF00297 Ribosomal protein L3 VM_01960 PF00573 Ribosomal protein L4/L1 family VM_01965 PF00276 Ribosomal protein L23 VM_01970 PF00181 Ribosomal Proteins L2, RNA binding domain VM_01970 PF03947 Ribosomal Proteins L2, C-terminal domain VM_01975 PF00203 Ribosomal protein S19 VM_01980 PF00237 Ribosomal protein L22p/L17e VM_01985 PF07650 KH domain VM_01985 PF00189 Ribosomal protein S3, C-terminal domain VM_01990 PF00252 Ribosomal protein L16p/L10e VM_01995 PF00831 Ribosomal L29 protein VM_02000 PF00366 Ribosomal protein S17 VM_02005 PF00238 Ribosomal protein L14p/L23e VM_02010 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VM_02010 PF00467 KOW motif VM_02015 PF00673 ribosomal L5P family C-terminus VM_02015 PF00281 Ribosomal protein L5 VM_02020 PF00253 Ribosomal protein S14p/S29e VM_02025 PF00410 Ribosomal protein S8 VM_02030 PF00347 Ribosomal protein L6 VM_02035 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VM_02040 PF03719 Ribosomal protein S5, C-terminal domain VM_02040 PF00333 Ribosomal protein S5, N-terminal domain VM_02045 PF00327 Ribosomal protein L30p/L7e VM_02050 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VM_02055 PF00344 SecY translocase VM_02060 PF00444 Ribosomal protein L36 VM_02065 PF00416 Ribosomal protein S13/S18 VM_02070 PF00411 Ribosomal protein S11 VM_02075 PF01479 S4 domain VM_02075 PF00163 Ribosomal protein S4/S9 N-terminal domain VM_02080 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VM_02080 PF01000 RNA polymerase Rpb3/RpoA insert domain VM_02080 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VM_02085 PF01196 Ribosomal protein L17 VM_02095 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VM_02095 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VM_02100 PF04225 Opacity-associated protein A LysM-like domain VM_02100 PF08525 Opacity-associated protein A N-terminal motif VM_02105 PF00892 EamA-like transporter family VM_02110 PF13673 Acetyltransferase (GNAT) domain VM_02115 PF03880 DbpA RNA binding domain VM_02115 PF00270 DEAD/DEAH box helicase VM_02115 PF00271 Helicase conserved C-terminal domain VM_02130 PF10414 Sirohaem synthase dimerisation region VM_02130 PF14824 Sirohaem biosynthesis protein central VM_02130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VM_02135 PF01507 Phosphoadenosine phosphosulfate reductase family VM_02140 PF00009 Elongation factor Tu GTP binding domain VM_02165 PF00005 ABC transporter VM_02175 PF10795 Protein of unknown function (DUF2607) VM_02180 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VM_02185 PF01625 Peptide methionine sulfoxide reductase VM_02190 PF07244 Surface antigen variable number repeat VM_02190 PF01103 Surface antigen VM_02190 PF17243 POTRA domain TamA domain 1 VM_02195 PF04357 TamB, inner membrane protein subunit of TAM complex VM_02200 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VM_02210 PF00719 Inorganic pyrophosphatase VM_02215 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VM_02225 PF08245 Mur ligase middle domain VM_02225 PF02875 Mur ligase family, glutamate ligase domain VM_02225 PF01225 Mur ligase family, catalytic domain VM_02230 PF02441 Flavoprotein VM_02245 PF00528 Binding-protein-dependent transport system inner membrane component VM_02250 PF00005 ABC transporter VM_02255 PF04751 Protein of unknown function (DUF615) VM_02260 PF01523 Putative modulator of DNA gyrase VM_02265 PF00571 CBS domain VM_02265 PF01769 Divalent cation transporter VM_02265 PF03448 MgtE intracellular N domain VM_02270 PF00381 PTS HPr component phosphorylation site VM_02275 PF03668 P-loop ATPase protein family VM_02280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_02285 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VM_02290 PF00309 Sigma-54 factor, Activator interacting domain (AID) VM_02290 PF04963 Sigma-54 factor, core binding domain VM_02290 PF04552 Sigma-54, DNA binding domain VM_02295 PF12399 Branched-chain amino acid ATP-binding cassette transporter VM_02295 PF00005 ABC transporter VM_02300 PF03968 OstA-like protein VM_02315 PF00571 CBS domain VM_02315 PF01380 SIS domain VM_02320 PF01699 Sodium/calcium exchanger protein VM_02330 PF00005 ABC transporter VM_02335 PF02405 Permease MlaE VM_02340 PF02470 MlaD protein VM_02345 PF05494 MlaC protein VM_02355 PF01722 BolA-like protein VM_02360 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VM_02365 PF01553 Acyltransferase VM_02370 PF01042 Endoribonuclease L-PSP VM_02375 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VM_02375 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VM_02380 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VM_02380 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VM_02385 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VM_02385 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VM_02390 PF02562 PhoH-like protein VM_02390 PF13638 PIN domain VM_02400 PF18337 RapA N-terminal Tudor like domain VM_02400 PF00271 Helicase conserved C-terminal domain VM_02400 PF12137 RNA polymerase recycling family C-terminal VM_02400 PF00176 SNF2 family N-terminal domain VM_02400 PF18339 RapA N-terminal Tudor like domain 1 VM_02405 PF00849 RNA pseudouridylate synthase VM_02410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VM_02410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VM_02415 PF05987 Bacterial protein of unknown function (DUF898) VM_02425 PF08264 Anticodon-binding domain of tRNA VM_02425 PF00133 tRNA synthetases class I (I, L, M and V) VM_02425 PF10458 Valyl tRNA synthetase tRNA binding arm VM_02430 PF04364 DNA polymerase III chi subunit, HolC VM_02435 PF00883 Cytosol aminopeptidase family, catalytic domain VM_02435 PF02789 Cytosol aminopeptidase family, N-terminal domain VM_02440 PF03739 Lipopolysaccharide export system permease LptF/LptG VM_02445 PF03739 Lipopolysaccharide export system permease LptF/LptG VM_02460 PF00072 Response regulator receiver domain VM_02500 PF00694 Aconitase C-terminal domain VM_02505 PF00330 Aconitase family (aconitate hydratase) VM_02510 PF00180 Isocitrate/isopropylmalate dehydrogenase VM_02515 PF08502 LeuA allosteric (dimerisation) domain VM_02515 PF00682 HMGL-like VM_02525 PF01569 PAP2 superfamily VM_02535 PF03466 LysR substrate binding domain VM_02535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_02540 PF00501 AMP-binding enzyme VM_02545 PF00205 Thiamine pyrophosphate enzyme, central domain VM_02545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VM_02545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VM_02550 PF10369 Small subunit of acetolactate synthase VM_02555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VM_02555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VM_02555 PF01842 ACT domain VM_02560 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VM_02565 PF01812 5-formyltetrahydrofolate cyclo-ligase family VM_02575 PF05164 Cell division protein ZapA VM_02580 PF03695 Uncharacterised protein family (UPF0149) VM_02585 PF01494 FAD binding domain VM_02590 PF01494 FAD binding domain VM_02605 PF03937 Flavinator of succinate dehydrogenase VM_02615 PF02910 Fumarate reductase flavoprotein C-term VM_02615 PF00890 FAD binding domain VM_02625 PF08281 Sigma-70, region 4 VM_02625 PF04542 Sigma-70 region 2 VM_02630 PF03872 Anti sigma-E protein RseA, N-terminal domain VM_02630 PF03873 Anti sigma-E protein RseA, C-terminal domain VM_02635 PF03888 MucB/RseB N-terminal domain VM_02635 PF17188 MucB/RseB C-terminal domain VM_02645 PF03144 Elongation factor Tu domain 2 VM_02645 PF00679 Elongation factor G C-terminus VM_02645 PF00009 Elongation factor Tu GTP binding domain VM_02645 PF06421 GTP-binding protein LepA C-terminus VM_02650 PF10502 Signal peptidase, peptidase S26 VM_02655 PF00035 Double-stranded RNA binding motif VM_02655 PF14622 Ribonuclease-III-like VM_02660 PF07650 KH domain VM_02660 PF01926 50S ribosome-binding GTPase VM_02665 PF11967 Recombination protein O N terminal VM_02665 PF02565 Recombination protein O C terminal VM_02670 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VM_02675 PF01648 4'-phosphopantetheinyl transferase superfamily VM_02695 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VM_02695 PF00512 His Kinase A (phospho-acceptor) domain VM_02695 PF01627 Hpt domain VM_02695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_02695 PF00672 HAMP domain VM_02695 PF00072 Response regulator receiver domain VM_02700 PF01938 TRAM domain VM_02700 PF05958 tRNA (Uracil-5-)-methyltransferase VM_02705 PF02824 TGS domain VM_02705 PF04607 Region found in RelA / SpoT proteins VM_02705 PF13291 ACT domain VM_02710 PF03819 MazG nucleotide pyrophosphohydrolase domain VM_02720 PF00117 Glutamine amidotransferase class-I VM_02720 PF06418 CTP synthase N-terminus VM_02725 PF03952 Enolase, N-terminal domain VM_02725 PF00113 Enolase, C-terminal TIM barrel domain VM_02735 PF03222 Tryptophan/tyrosine permease family VM_02740 PF01212 Beta-eliminating lyase VM_02745 PF01743 Poly A polymerase head domain VM_02745 PF01966 HD domain VM_02745 PF12627 Probable RNA and SrmB- binding site of polymerase A VM_02750 PF01471 Putative peptidoglycan binding domain VM_02750 PF13401 AAA domain VM_02760 PF08239 Bacterial SH3 domain VM_02765 PF01384 Phosphate transporter family VM_02770 PF01865 Protein of unknown function DUF47 VM_02775 PF01928 CYTH domain VM_02780 PF00027 Cyclic nucleotide-binding domain VM_02780 PF00520 Ion transport protein VM_02785 PF00672 HAMP domain VM_02785 PF02743 Cache domain VM_02785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_02790 PF03710 Glutamate-ammonia ligase adenylyltransferase VM_02790 PF08335 GlnD PII-uridylyltransferase VM_02795 PF00294 pfkB family carbohydrate kinase VM_02795 PF01467 Cytidylyltransferase-like VM_02800 PF02321 Outer membrane efflux protein VM_02805 PF00293 NUDIX domain VM_02810 PF06853 Protein of unknown function (DUF1249) VM_02815 PF00149 Calcineurin-like phosphoesterase VM_02820 PF05728 Uncharacterised protein family (UPF0227) VM_02825 PF00204 DNA gyrase B VM_02825 PF00986 DNA gyrase B subunit, carboxyl terminus VM_02825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_02825 PF01751 Toprim domain VM_02830 PF03989 DNA gyrase C-terminal domain, beta-propeller VM_02830 PF00521 DNA gyrase/topoisomerase IV, subunit A VM_02835 PF03884 DNA gyrase inhibitor YacG VM_02840 PF07072 Cell division protein VM_02845 PF01121 Dephospho-CoA kinase VM_02850 PF06750 Bacterial Peptidase A24 N-terminal domain VM_02850 PF01478 Type IV leader peptidase family VM_02855 PF00482 Type II secretion system (T2SS), protein F VM_02860 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VM_02860 PF00437 Type II/IV secretion system protein VM_02865 PF07963 Prokaryotic N-terminal methylation motif VM_02865 PF00114 Pilin (bacterial filament) VM_02870 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VM_02870 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VM_02875 PF01510 N-acetylmuramoyl-L-alanine amidase VM_02880 PF00258 Flavodoxin VM_02885 PF00589 Phage integrase family VM_02885 PF02899 Phage integrase, N-terminal SAM-like domain VM_02890 PF10411 Disulfide bond isomerase protein N-terminus VM_02890 PF13098 Thioredoxin-like domain VM_02895 PF17768 RecJ OB domain VM_02895 PF02272 DHHA1 domain VM_02895 PF01368 DHH family VM_02900 PF02833 DHHA2 domain VM_02900 PF01368 DHH family VM_02905 PF02872 5'-nucleotidase, C-terminal domain VM_02905 PF00149 Calcineurin-like phosphoesterase VM_02910 PF07729 FCD domain VM_02910 PF00392 Bacterial regulatory proteins, gntR family VM_02915 PF00456 Transketolase, thiamine diphosphate binding domain VM_02915 PF17831 Pyruvate dehydrogenase E1 component middle domain VM_02920 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VM_02920 PF02817 e3 binding domain VM_02920 PF00364 Biotin-requiring enzyme VM_02925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VM_02925 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_02935 PF01795 MraW methylase family VM_02940 PF04999 Cell division protein FtsL VM_02945 PF03717 Penicillin-binding Protein dimerisation domain VM_02945 PF00905 Penicillin binding protein transpeptidase domain VM_02950 PF01225 Mur ligase family, catalytic domain VM_02950 PF08245 Mur ligase middle domain VM_02950 PF02875 Mur ligase family, glutamate ligase domain VM_02955 PF01225 Mur ligase family, catalytic domain VM_02955 PF02875 Mur ligase family, glutamate ligase domain VM_02955 PF08245 Mur ligase middle domain VM_02960 PF00953 Glycosyl transferase family 4 VM_02960 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VM_02965 PF02875 Mur ligase family, glutamate ligase domain VM_02965 PF08245 Mur ligase middle domain VM_02970 PF01098 Cell cycle protein VM_02975 PF04101 Glycosyltransferase family 28 C-terminal domain VM_02975 PF03033 Glycosyltransferase family 28 N-terminal domain VM_02980 PF02875 Mur ligase family, glutamate ligase domain VM_02980 PF01225 Mur ligase family, catalytic domain VM_02980 PF08245 Mur ligase middle domain VM_02985 PF03799 Cell division protein FtsQ VM_02985 PF08478 POTRA domain, FtsQ-type VM_02990 PF02491 SHS2 domain inserted in FTSA VM_02995 PF00091 Tubulin/FtsZ family, GTPase domain VM_02995 PF12327 FtsZ family, C-terminal domain VM_03000 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VM_03010 PF07517 SecA DEAD-like domain VM_03010 PF02810 SEC-C motif VM_03010 PF01043 SecA preprotein cross-linking domain VM_03010 PF07516 SecA Wing and Scaffold domain VM_03015 PF00293 NUDIX domain VM_03020 PF05173 Dihydrodipicolinate reductase, C-terminus VM_03020 PF01113 Dihydrodipicolinate reductase, N-terminus VM_03025 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VM_03025 PF00117 Glutamine amidotransferase class-I VM_03030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VM_03030 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VM_03030 PF02142 MGS-like domain VM_03035 PF01925 Sulfite exporter TauE/SafE VM_03040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_03040 PF03466 LysR substrate binding domain VM_03045 PF03458 UPF0126 domain VM_03050 PF01497 Periplasmic binding protein VM_03060 PF01048 Phosphorylase superfamily VM_03070 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_03070 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VM_03075 PF01645 Conserved region in glutamate synthase VM_03075 PF01493 GXGXG motif VM_03075 PF04898 Glutamate synthase central domain VM_03075 PF00310 Glutamine amidotransferases class-II VM_03080 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VM_03080 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_03085 PF01493 GXGXG motif VM_03085 PF01645 Conserved region in glutamate synthase VM_03085 PF04898 Glutamate synthase central domain VM_03085 PF00310 Glutamine amidotransferases class-II VM_03090 PF04055 Radical SAM superfamily VM_03090 PF16199 Radical_SAM C-terminal domain VM_03095 PF00563 EAL domain VM_03095 PF01590 GAF domain VM_03095 PF00360 Phytochrome region VM_03095 PF00990 Diguanylate cyclase, GGDEF domain VM_03100 PF00072 Response regulator receiver domain VM_03100 PF00989 PAS fold VM_03100 PF01627 Hpt domain VM_03100 PF00512 His Kinase A (phospho-acceptor) domain VM_03100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_03100 PF18415 Histidine kinase receptor ArcB trans-membrane domain VM_03105 PF00072 Response regulator receiver domain VM_03105 PF00486 Transcriptional regulatory protein, C terminal VM_03115 PF03737 Aldolase/RraA VM_03125 PF00742 Homoserine dehydrogenase VM_03125 PF13840 ACT domain VM_03125 PF01842 ACT domain VM_03125 PF00696 Amino acid kinase family VM_03125 PF03447 Homoserine dehydrogenase, NAD binding domain VM_03130 PF08544 GHMP kinases C terminal VM_03130 PF00288 GHMP kinases N terminal domain VM_03135 PF00291 Pyridoxal-phosphate dependent enzyme VM_03135 PF14821 Threonine synthase N terminus VM_03140 PF01228 Glycine radical VM_03145 PF01261 Xylose isomerase-like TIM barrel VM_03150 PF03167 Uracil DNA glycosylase superfamily VM_03170 PF01235 Sodium:alanine symporter family VM_03175 PF03883 Peroxide stress protein YaaA VM_03180 PF01026 TatD related DNase VM_03185 PF07662 Na+ dependent nucleoside transporter C-terminus VM_03185 PF01773 Na+ dependent nucleoside transporter N-terminus VM_03185 PF07670 Nucleoside recognition VM_03195 PF01791 DeoC/LacD family aldolase VM_03200 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VM_03200 PF00591 Glycosyl transferase family, a/b domain VM_03200 PF02885 Glycosyl transferase family, helical bundle domain VM_03205 PF01676 Metalloenzyme superfamily VM_03210 PF01048 Phosphorylase superfamily VM_03220 PF18429 Domain of unknown function (DUF5609) VM_03230 PF18073 Rubredoxin metal binding domain VM_03235 PF00679 Elongation factor G C-terminus VM_03235 PF03764 Elongation factor G, domain IV VM_03235 PF00009 Elongation factor Tu GTP binding domain VM_03235 PF03144 Elongation factor Tu domain 2 VM_03235 PF14492 Elongation Factor G, domain II VM_03240 PF03466 LysR substrate binding domain VM_03240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_03250 PF00501 AMP-binding enzyme VM_03255 PF00072 Response regulator receiver domain VM_03265 PF16353 Domain of unknown function(DUF4981) VM_03265 PF02929 Beta galactosidase small chain VM_03265 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VM_03265 PF02837 Glycosyl hydrolases family 2, sugar binding domain VM_03265 PF00703 Glycosyl hydrolases family 2 VM_03270 PF00356 Bacterial regulatory proteins, lacI family VM_03275 PF01588 Putative tRNA binding domain VM_03285 PF01544 CorA-like Mg2+ transporter protein VM_03290 PF02080 TrkA-C domain VM_03290 PF08443 RimK-like ATP-grasp domain VM_03290 PF18030 RimK PreATP-grasp domain VM_03295 PF00583 Acetyltransferase (GNAT) family VM_03305 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VM_03305 PF14602 Hexapeptide repeat of succinyl-transferase VM_03315 PF07130 YebG protein VM_03330 PF17946 RecC C-terminal domain VM_03335 PF00580 UvrD/REP helicase N-terminal domain VM_03335 PF13361 UvrD-like helicase C-terminal domain VM_03335 PF12705 PD-(D/E)XK nuclease superfamily VM_03340 PF13538 UvrD-like helicase C-terminal domain VM_03355 PF00696 Amino acid kinase family VM_03355 PF00583 Acetyltransferase (GNAT) family VM_03365 PF06725 3D domain VM_03365 PF03562 MltA specific insert domain VM_03370 PF00899 ThiF family VM_03375 PF02657 Fe-S metabolism associated domain VM_03380 PF00266 Aminotransferase class-V VM_03385 PF01965 DJ-1/PfpI family VM_03390 PF08546 Ketopantoate reductase PanE/ApbA C terminal VM_03390 PF02558 Ketopantoate reductase PanE/ApbA VM_03395 PF03502 Nucleoside-specific channel-forming protein, Tsx VM_03405 PF04542 Sigma-70 region 2 VM_03405 PF04545 Sigma-70, region 4 VM_03415 PF07690 Major Facilitator Superfamily VM_03420 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VM_03430 PF05175 Methyltransferase small domain VM_03435 PF01722 BolA-like protein VM_03440 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VM_03440 PF11973 NQRA C-terminal domain VM_03445 PF03116 NQR2, RnfD, RnfE family VM_03450 PF04205 FMN-binding domain VM_03455 PF02508 Rnf-Nqr subunit, membrane protein VM_03460 PF02508 Rnf-Nqr subunit, membrane protein VM_03465 PF00175 Oxidoreductase NAD-binding domain VM_03465 PF00111 2Fe-2S iron-sulfur cluster binding domain VM_03465 PF00970 Oxidoreductase FAD-binding domain VM_03475 PF02424 ApbE family VM_03485 PF00817 impB/mucB/samB family VM_03485 PF11798 IMS family HHH motif VM_03500 PF00209 Sodium:neurotransmitter symporter family VM_03510 PF08443 RimK-like ATP-grasp domain VM_03510 PF18030 RimK PreATP-grasp domain VM_03515 PF18030 RimK PreATP-grasp domain VM_03515 PF08443 RimK-like ATP-grasp domain VM_03520 PF01546 Peptidase family M20/M25/M40 VM_03520 PF07687 Peptidase dimerisation domain VM_03525 PF00860 Permease family VM_03530 PF00156 Phosphoribosyl transferase domain VM_03540 PF07417 Sigma factor-binding transcriptional regulator Crl VM_03545 PF00696 Amino acid kinase family VM_03545 PF01472 PUA domain VM_03550 PF00171 Aldehyde dehydrogenase family VM_03555 PF03477 ATP cone domain VM_03560 PF01872 RibD C-terminal domain VM_03560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VM_03565 PF00677 Lumazine binding domain VM_03570 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VM_03570 PF00925 GTP cyclohydrolase II VM_03575 PF00885 6,7-dimethyl-8-ribityllumazine synthase VM_03580 PF01029 NusB family VM_03585 PF00586 AIR synthase related protein, N-terminal domain VM_03585 PF02769 AIR synthase related protein, C-terminal domain VM_03590 PF04608 Phosphatidylglycerophosphatase A VM_03595 PF11944 Protein of unknown function (DUF3461) VM_03600 PF01909 Nucleotidyltransferase domain VM_03600 PF01966 HD domain VM_03600 PF08335 GlnD PII-uridylyltransferase VM_03605 PF00557 Metallopeptidase family M24 VM_03610 PF00318 Ribosomal protein S2 VM_03615 PF00889 Elongation factor TS VM_03620 PF00696 Amino acid kinase family VM_03625 PF01765 Ribosome recycling factor VM_03630 PF01255 Putative undecaprenyl diphosphate synthase VM_03640 PF13288 DXP reductoisomerase C-terminal domain VM_03640 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VM_03640 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VM_03645 PF02163 Peptidase family M50 VM_03645 PF17820 PDZ domain VM_03650 PF07244 Surface antigen variable number repeat VM_03650 PF01103 Surface antigen VM_03655 PF03938 Outer membrane protein (OmpH-like) VM_03660 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VM_03660 PF00132 Bacterial transferase hexapeptide (six repeats) VM_03665 PF07977 FabA-like domain VM_03670 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VM_03670 PF00132 Bacterial transferase hexapeptide (six repeats) VM_03675 PF02684 Lipid-A-disaccharide synthetase VM_03680 PF01351 Ribonuclease HII VM_03685 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VM_03685 PF01336 OB-fold nucleic acid binding domain VM_03685 PF14579 Helix-hairpin-helix motif VM_03685 PF02811 PHP domain VM_03685 PF07733 Bacterial DNA polymerase III alpha NTPase domain VM_03690 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VM_03695 PF11734 TilS substrate C-terminal domain VM_03695 PF09179 TilS substrate binding domain VM_03695 PF01171 PP-loop family VM_03700 PF00034 Cytochrome c VM_03705 PF00543 Nitrogen regulatory protein P-II VM_03710 PF03372 Endonuclease/Exonuclease/phosphatase family VM_03715 PF01476 LysM domain VM_03715 PF01464 Transglycosylase SLT domain VM_03720 PF00753 Metallo-beta-lactamase superfamily VM_03720 PF16123 Hydroxyacylglutathione hydrolase C-terminus VM_03725 PF08241 Methyltransferase domain VM_03730 PF00075 RNase H VM_03735 PF00929 Exonuclease VM_03745 PF09317 Domain of unknown function (DUF1974) VM_03745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VM_03745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VM_03745 PF02770 Acyl-CoA dehydrogenase, middle domain VM_03750 PF13580 SIS domain VM_03755 PF13230 Glutamine amidotransferases class-II VM_03760 PF00551 Formyl transferase VM_03765 PF00586 AIR synthase related protein, N-terminal domain VM_03765 PF02769 AIR synthase related protein, C-terminal domain VM_03775 PF00849 RNA pseudouridylate synthase VM_03775 PF01479 S4 domain VM_03780 PF01713 Smr domain VM_03800 PF02838 Glycosyl hydrolase family 20, domain 2 VM_03800 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VM_03800 PF00728 Glycosyl hydrolase family 20, catalytic domain VM_03800 PF03173 Putative carbohydrate binding domain VM_03810 PF00403 Heavy-metal-associated domain VM_03815 PF00749 tRNA synthetases class I (E and Q), catalytic domain VM_03820 PF00691 OmpA family VM_03820 PF01389 OmpA-like transmembrane domain VM_03865 PF00072 Response regulator receiver domain VM_03865 PF01584 CheW-like domain VM_03870 PF03705 CheR methyltransferase, all-alpha domain VM_03870 PF01739 CheR methyltransferase, SAM binding domain VM_03875 PF00460 Flagella basal body rod protein VM_03880 PF00460 Flagella basal body rod protein VM_03880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_03885 PF03963 Flagellar hook capping protein - N-terminal region VM_03885 PF13860 FlgD Ig-like domain VM_03885 PF13861 FlgD Tudor-like domain VM_03890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_03890 PF07559 Flagellar basal body protein FlaE VM_03890 PF00460 Flagella basal body rod protein VM_03895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_03895 PF00460 Flagella basal body rod protein VM_03900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_03900 PF00460 Flagella basal body rod protein VM_03905 PF02107 Flagellar L-ring protein VM_03910 PF02119 Flagellar P-ring protein VM_03915 PF10135 Rod binding protein VM_03915 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VM_03920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_03920 PF07196 Flagellin hook IN motif VM_03930 PF07196 Flagellin hook IN motif VM_03930 PF00700 Bacterial flagellin C-terminal helical region VM_03930 PF00669 Bacterial flagellin N-terminal helical region VM_03935 PF00700 Bacterial flagellin C-terminal helical region VM_03935 PF07196 Flagellin hook IN motif VM_03935 PF00669 Bacterial flagellin N-terminal helical region VM_04020 PF01926 50S ribosome-binding GTPase VM_04020 PF06071 Protein of unknown function (DUF933) VM_04025 PF01195 Peptidyl-tRNA hydrolase VM_04030 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VM_04030 PF14572 Phosphoribosyl synthetase-associated domain VM_04035 PF08544 GHMP kinases C terminal VM_04035 PF00288 GHMP kinases N terminal domain VM_04040 PF03550 Outer membrane lipoprotein LolB VM_04045 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VM_04045 PF01488 Shikimate / quinate 5-dehydrogenase VM_04045 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VM_04050 PF03462 PCRF domain VM_04050 PF00472 RF-1 domain VM_04055 PF13847 Methyltransferase domain VM_04055 PF17827 PrmC N-terminal domain VM_04060 PF04247 Invasion gene expression up-regulator, SirB VM_04065 PF13369 Transglutaminase-like superfamily VM_04070 PF00793 DAHP synthetase I family VM_04075 PF02872 5'-nucleotidase, C-terminal domain VM_04075 PF00149 Calcineurin-like phosphoesterase VM_04080 PF04073 Aminoacyl-tRNA editing domain VM_04085 PF00860 Permease family VM_04100 PF03358 NADPH-dependent FMN reductase VM_04105 PF03960 ArsC family VM_04110 PF13181 Tetratricopeptide repeat VM_04110 PF01435 Peptidase family M48 VM_04120 PF01594 AI-2E family transporter VM_04125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_04125 PF02743 Cache domain VM_04125 PF00672 HAMP domain VM_04150 PF00578 AhpC/TSA family VM_04185 PF00701 Dihydrodipicolinate synthetase family VM_04190 PF06804 NlpB/DapX lipoprotein VM_04200 PF02557 D-alanyl-D-alanine carboxypeptidase VM_04205 PF01546 Peptidase family M20/M25/M40 VM_04205 PF07687 Peptidase dimerisation domain VM_04210 PF03960 ArsC family VM_04225 PF11143 Protein of unknown function (DUF2919) VM_04230 PF04261 Dyp-type peroxidase family VM_04235 PF00669 Bacterial flagellin N-terminal helical region VM_04235 PF07196 Flagellin hook IN motif VM_04235 PF00700 Bacterial flagellin C-terminal helical region VM_04240 PF00669 Bacterial flagellin N-terminal helical region VM_04240 PF00700 Bacterial flagellin C-terminal helical region VM_04240 PF07196 Flagellin hook IN motif VM_04245 PF00669 Bacterial flagellin N-terminal helical region VM_04245 PF00700 Bacterial flagellin C-terminal helical region VM_04245 PF07196 Flagellin hook IN motif VM_04250 PF03646 FlaG protein VM_04255 PF07195 Flagellar hook-associated protein 2 C-terminus VM_04255 PF07196 Flagellin hook IN motif VM_04255 PF02465 Flagellar hook-associated protein 2 N-terminus VM_04265 PF02561 Flagellar protein FliS VM_04270 PF02954 Bacterial regulatory protein, Fis family VM_04270 PF00158 Sigma-54 interaction domain VM_04270 PF00072 Response regulator receiver domain VM_04275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_04275 PF00512 His Kinase A (phospho-acceptor) domain VM_04280 PF02954 Bacterial regulatory protein, Fis family VM_04280 PF00158 Sigma-54 interaction domain VM_04280 PF00072 Response regulator receiver domain VM_04285 PF02049 Flagellar hook-basal body complex protein FliE VM_04290 PF08345 Flagellar M-ring protein C-terminal VM_04290 PF01514 Secretory protein of YscJ/FliF family VM_04295 PF14842 FliG N-terminal domain VM_04295 PF01706 FliG C-terminal domain VM_04295 PF14841 FliG middle domain VM_04300 PF02108 Flagellar assembly protein FliH VM_04305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VM_04305 PF18269 T3SS EscN ATPase C-terminal domain VM_04325 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VM_04325 PF02154 Flagellar motor switch protein FliM VM_04330 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VM_04335 PF04347 Flagellar biosynthesis protein, FliO VM_04340 PF00813 FliP family VM_04345 PF01313 Bacterial export proteins, family 3 VM_04350 PF01311 Bacterial export proteins, family 1 VM_04355 PF01312 FlhB HrpN YscU SpaS Family VM_04360 PF01713 Smr domain VM_04365 PF05175 Methyltransferase small domain VM_04375 PF01264 Chorismate synthase VM_04380 PF03458 UPF0126 domain VM_04385 PF04315 Elongation factor P hydroxylase VM_04390 PF08891 YfcL protein VM_04395 PF03358 NADPH-dependent FMN reductase VM_04400 PF01266 FAD dependent oxidoreductase VM_04400 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VM_04405 PF00109 Beta-ketoacyl synthase, N-terminal domain VM_04405 PF02801 Beta-ketoacyl synthase, C-terminal domain VM_04410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VM_04410 PF11890 Domain of unknown function (DUF3410) VM_04410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VM_04415 PF02774 Semialdehyde dehydrogenase, dimerisation domain VM_04415 PF01118 Semialdehyde dehydrogenase, NAD binding domain VM_04420 PF01609 Transposase DDE domain VM_04420 PF02281 Transposase Tn5 dimerisation domain VM_04420 PF14706 Transposase DNA-binding VM_04425 PF01475 Ferric uptake regulator family VM_04435 PF03466 LysR substrate binding domain VM_04435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_04440 PF03788 LrgA family VM_04445 PF04172 LrgB-like family VM_04450 PF00258 Flavodoxin VM_04460 PF12697 Alpha/beta hydrolase family VM_04465 PF03925 SeqA protein C-terminal domain VM_04465 PF17206 SeqA protein N-terminal domain VM_04470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VM_04470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VM_04470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VM_04470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VM_04480 PF01784 NIF3 (NGG1p interacting factor 3) VM_04485 PF00285 Citrate synthase, C-terminal domain VM_04490 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VM_04495 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VM_04500 PF00890 FAD binding domain VM_04500 PF02910 Fumarate reductase flavoprotein C-term VM_04505 PF13085 2Fe-2S iron-sulfur cluster binding domain VM_04510 PF16870 2-oxoglutarate dehydrogenase C-terminal VM_04510 PF00676 Dehydrogenase E1 component VM_04510 PF16078 2-oxoglutarate dehydrogenase N-terminus VM_04510 PF02779 Transketolase, pyrimidine binding domain VM_04515 PF02817 e3 binding domain VM_04515 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VM_04515 PF00364 Biotin-requiring enzyme VM_04520 PF08442 ATP-grasp domain VM_04520 PF00549 CoA-ligase VM_04525 PF02629 CoA binding domain VM_04525 PF00549 CoA-ligase VM_04530 PF00950 ABC 3 transport family VM_04535 PF00005 ABC transporter VM_04540 PF01297 Zinc-uptake complex component A periplasmic VM_04545 PF02311 AraC-like ligand binding domain VM_04545 PF12833 Helix-turn-helix domain VM_04550 PF04023 FeoA domain VM_04555 PF07664 Ferrous iron transport protein B C terminus VM_04555 PF07670 Nucleoside recognition VM_04555 PF02421 Ferrous iron transport protein B VM_04565 PF14706 Transposase DNA-binding VM_04565 PF02281 Transposase Tn5 dimerisation domain VM_04565 PF01609 Transposase DDE domain VM_04575 PF00750 tRNA synthetases class I (R) VM_04575 PF05746 DALR anticodon binding domain VM_04575 PF03485 Arginyl tRNA synthetase N terminal domain VM_04585 PF05193 Peptidase M16 inactive domain VM_04585 PF00675 Insulinase (Peptidase family M16) VM_04590 PF00300 Histidine phosphatase superfamily (branch 1) VM_04595 PF00771 FHIPEP family VM_04600 PF00448 SRP54-type protein, GTPase domain VM_04605 PF10609 NUBPL iron-transfer P-loop NTPase VM_04610 PF04539 Sigma-70 region 3 VM_04610 PF04542 Sigma-70 region 2 VM_04610 PF04545 Sigma-70, region 4 VM_04615 PF00072 Response regulator receiver domain VM_04620 PF04344 Chemotaxis phosphatase, CheZ VM_04625 PF07194 P2 response regulator binding domain VM_04625 PF01627 Hpt domain VM_04625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_04625 PF01584 CheW-like domain VM_04625 PF02895 Signal transducing histidine kinase, homodimeric domain VM_04630 PF01339 CheB methylesterase VM_04630 PF00072 Response regulator receiver domain VM_04635 PF13614 AAA domain VM_04645 PF01584 CheW-like domain VM_04655 PF00005 ABC transporter VM_04660 PF03379 CcmB protein VM_04665 PF01578 Cytochrome C assembly protein VM_04675 PF03100 CcmE VM_04680 PF01578 Cytochrome C assembly protein VM_04680 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VM_04685 PF08534 Redoxin VM_04690 PF03918 Cytochrome C biogenesis protein VM_04700 PF04333 MlaA lipoprotein VM_04715 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VM_04715 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VM_04720 PF00462 Glutaredoxin VM_04725 PF01751 Toprim domain VM_04725 PF01131 DNA topoisomerase VM_04730 PF00850 Histone deacetylase domain VM_04745 PF00106 short chain dehydrogenase VM_04765 PF00884 Sulfatase VM_04765 PF11893 Domain of unknown function (DUF3413) VM_04770 PF07208 Protein of unknown function (DUF1414) VM_04775 PF04245 37-kD nucleoid-associated bacterial protein VM_04785 PF03553 Na+/H+ antiporter family VM_04790 PF01118 Semialdehyde dehydrogenase, NAD binding domain VM_04790 PF02774 Semialdehyde dehydrogenase, dimerisation domain VM_04795 PF00520 Ion transport protein VM_04795 PF00027 Cyclic nucleotide-binding domain VM_04800 PF01914 MarC family integral membrane protein VM_04805 PF00465 Iron-containing alcohol dehydrogenase VM_04805 PF00171 Aldehyde dehydrogenase family VM_04815 PF00916 Sulfate permease family VM_04815 PF01740 STAS domain VM_04820 PF00575 S1 RNA binding domain VM_04820 PF10150 Ribonuclease E/G family VM_04820 PF12111 Polyribonucleotide phosphorylase C terminal VM_04830 PF00849 RNA pseudouridylate synthase VM_04830 PF01479 S4 domain VM_04835 PF02545 Maf-like protein VM_04840 PF02620 Large ribosomal RNA subunit accumulation protein YceD VM_04845 PF01783 Ribosomal L32p protein family VM_04850 PF02504 Fatty acid synthesis protein VM_04855 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VM_04855 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VM_04860 PF00698 Acyl transferase domain VM_04870 PF00550 Phosphopantetheine attachment site VM_04875 PF00109 Beta-ketoacyl synthase, N-terminal domain VM_04875 PF02801 Beta-ketoacyl synthase, C-terminal domain VM_04880 PF01063 Amino-transferase class IV VM_04885 PF02618 YceG-like family VM_04890 PF02223 Thymidylate kinase VM_04895 PF09115 DNA polymerase III, delta subunit, C terminal VM_04900 PF01026 TatD related DNase VM_04905 PF02378 Phosphotransferase system, EIIC VM_04905 PF00367 phosphotransferase system, EIIB VM_04915 PF00209 Sodium:neurotransmitter symporter family VM_04925 PF01734 Patatin-like phospholipase VM_04930 PF00224 Pyruvate kinase, barrel domain VM_04930 PF02887 Pyruvate kinase, alpha/beta domain VM_04935 PF00480 ROK family VM_04940 PF00072 Response regulator receiver domain VM_04940 PF01584 CheW-like domain VM_04950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VM_04970 PF13847 Methyltransferase domain VM_04980 PF01263 Aldose 1-epimerase VM_04985 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VM_04985 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VM_04990 PF01641 SelR domain VM_05000 PF07023 Protein of unknown function (DUF1315) VM_05005 PF00710 Asparaginase, N-terminal VM_05005 PF17763 Glutaminase/Asparaginase C-terminal domain VM_05010 PF01343 Peptidase family S49 VM_05015 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VM_05015 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_05020 PF01842 ACT domain VM_05020 PF00551 Formyl transferase VM_05030 PF04851 Type III restriction enzyme, res subunit VM_05030 PF13307 Helicase C-terminal domain VM_05035 PF00814 Glycoprotease family VM_05050 PF00561 alpha/beta hydrolase fold VM_05055 PF13193 AMP-binding enzyme C-terminal domain VM_05055 PF00501 AMP-binding enzyme VM_05060 PF01612 3'-5' exonuclease VM_05060 PF00570 HRDC domain VM_05070 PF01694 Rhomboid family VM_05070 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VM_05080 PF01966 HD domain VM_05080 PF13286 Phosphohydrolase-associated domain VM_05090 PF00155 Aminotransferase class I and II VM_05095 PF00425 chorismate binding enzyme VM_05100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VM_05100 PF16582 Middle domain of thiamine pyrophosphate VM_05100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VM_05105 PF12697 Alpha/beta hydrolase family VM_05110 PF00378 Enoyl-CoA hydratase/isomerase VM_05115 PF13378 Enolase C-terminal domain-like VM_05120 PF00501 AMP-binding enzyme VM_05120 PF13193 AMP-binding enzyme C-terminal domain VM_05125 PF03594 Benzoate membrane transport protein VM_05130 PF07883 Cupin domain VM_05130 PF01381 Helix-turn-helix VM_05135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_05135 PF00672 HAMP domain VM_05140 PF07690 Major Facilitator Superfamily VM_05160 PF04170 NlpE N-terminal domain VM_05165 PF03776 Septum formation topological specificity factor MinE VM_05170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VM_05175 PF05209 Septum formation inhibitor MinC, N-terminal domain VM_05175 PF03775 Septum formation inhibitor MinC, C-terminal domain VM_05180 PF05166 YcgL domain VM_05185 PF13406 Transglycosylase SLT domain VM_05190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_05190 PF03466 LysR substrate binding domain VM_05195 PF07670 Nucleoside recognition VM_05195 PF07662 Na+ dependent nucleoside transporter C-terminus VM_05195 PF01773 Na+ dependent nucleoside transporter N-terminus VM_05200 PF00704 Glycosyl hydrolases family 18 VM_05210 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VM_05210 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VM_05230 PF01569 PAP2 superfamily VM_05260 PF03707 Bacterial signalling protein N terminal repeat VM_05260 PF00990 Diguanylate cyclase, GGDEF domain VM_05260 PF00563 EAL domain VM_05275 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VM_05280 PF03480 Bacterial extracellular solute-binding protein, family 7 VM_05285 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VM_05290 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VM_05295 PF00158 Sigma-54 interaction domain VM_05295 PF00072 Response regulator receiver domain VM_05295 PF02954 Bacterial regulatory protein, Fis family VM_05300 PF02743 Cache domain VM_05300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_05300 PF00512 His Kinase A (phospho-acceptor) domain VM_05310 PF05698 Bacterial trigger factor protein (TF) C-terminus VM_05310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VM_05310 PF05697 Bacterial trigger factor protein (TF) VM_05315 PF00574 Clp protease VM_05320 PF07724 AAA domain (Cdc48 subfamily) VM_05320 PF10431 C-terminal, D2-small domain, of ClpB protein VM_05320 PF06689 ClpX C4-type zinc finger VM_05325 PF05362 Lon protease (S16) C-terminal proteolytic domain VM_05325 PF02190 ATP-dependent protease La (LON) substrate-binding domain VM_05325 PF00004 ATPase family associated with various cellular activities (AAA) VM_05330 PF00216 Bacterial DNA-binding protein VM_05335 PF13145 PPIC-type PPIASE domain VM_05345 PF01797 Transposase IS200 like VM_05350 PF02224 Cytidylate kinase VM_05355 PF00575 S1 RNA binding domain VM_05360 PF00216 Bacterial DNA-binding protein VM_05365 PF06305 Lipopolysaccharide assembly protein A domain VM_05370 PF18073 Rubredoxin metal binding domain VM_05375 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VM_05380 PF00512 His Kinase A (phospho-acceptor) domain VM_05380 PF09308 LuxQ, periplasmic VM_05380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_05380 PF00072 Response regulator receiver domain VM_05390 PF02397 Bacterial sugar transferase VM_05395 PF00535 Glycosyl transferase family 2 VM_05400 PF00534 Glycosyl transferases group 1 VM_05415 PF12464 Maltose acetyltransferase VM_05415 PF14602 Hexapeptide repeat of succinyl-transferase VM_05415 PF00132 Bacterial transferase hexapeptide (six repeats) VM_05435 PF00534 Glycosyl transferases group 1 VM_05435 PF13439 Glycosyltransferase Family 4 VM_05445 PF02954 Bacterial regulatory protein, Fis family VM_05445 PF00158 Sigma-54 interaction domain VM_05445 PF00072 Response regulator receiver domain VM_05460 PF02563 Polysaccharide biosynthesis/export protein VM_05460 PF10531 SLBB domain VM_05490 PF00528 Binding-protein-dependent transport system inner membrane component VM_05495 PF12911 N-terminal TM domain of oligopeptide transport permease C VM_05495 PF00528 Binding-protein-dependent transport system inner membrane component VM_05500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_05505 PF00005 ABC transporter VM_05505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_05525 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VM_05535 PF03466 LysR substrate binding domain VM_05535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_05545 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VM_05545 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VM_05550 PF01037 Lrp/AsnC ligand binding domain VM_05555 PF09397 Ftsk gamma domain VM_05555 PF17854 FtsK alpha domain VM_05555 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VM_05555 PF01580 FtsK/SpoIIIE family VM_05560 PF02600 Disulfide bond formation protein DsbB VM_05565 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VM_05570 PF07840 FadR C-terminal domain VM_05570 PF00392 Bacterial regulatory proteins, gntR family VM_05585 PF01230 HIT domain VM_05600 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VM_05600 PF13036 Peptidoglycan-synthase activator LpoB VM_05605 PF01636 Phosphotransferase enzyme family VM_05610 PF05728 Uncharacterised protein family (UPF0227) VM_05615 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_05630 PF17757 UvrB interaction domain VM_05630 PF02559 CarD-like/TRCF domain VM_05630 PF00270 DEAD/DEAH box helicase VM_05630 PF00271 Helicase conserved C-terminal domain VM_05630 PF03461 TRCF domain VM_05640 PF02687 FtsX-like permease family VM_05640 PF12704 MacB-like periplasmic core domain VM_05645 PF00005 ABC transporter VM_05650 PF12704 MacB-like periplasmic core domain VM_05650 PF02687 FtsX-like permease family VM_05660 PF00753 Metallo-beta-lactamase superfamily VM_05660 PF13567 Domain of unknown function (DUF4131) VM_05660 PF03772 Competence protein VM_05665 PF00664 ABC transporter transmembrane region VM_05665 PF00005 ABC transporter VM_05670 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VM_05675 PF03966 Trm112p-like protein VM_05680 PF02348 Cytidylyltransferase VM_05690 PF00512 His Kinase A (phospho-acceptor) domain VM_05690 PF08521 Two-component sensor kinase N-terminal VM_05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_05695 PF00072 Response regulator receiver domain VM_05695 PF00486 Transcriptional regulatory protein, C terminal VM_05700 PF02378 Phosphotransferase system, EIIC VM_05700 PF00367 phosphotransferase system, EIIB VM_05705 PF04293 SpoVR like protein VM_05710 PF04285 Protein of unknown function (DUF444) VM_05715 PF08298 PrkA AAA domain VM_05715 PF06798 PrkA serine protein kinase C-terminal domain VM_05720 PF03887 YfbU domain VM_05730 PF04055 Radical SAM superfamily VM_05735 PF02743 Cache domain VM_05735 PF00672 HAMP domain VM_05735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_05745 PF02901 Pyruvate formate lyase-like VM_05745 PF01228 Glycine radical VM_05755 PF00005 ABC transporter VM_05760 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_05765 PF00528 Binding-protein-dependent transport system inner membrane component VM_05770 PF00528 Binding-protein-dependent transport system inner membrane component VM_05775 PF03372 Endonuclease/Exonuclease/phosphatase family VM_05780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_05780 PF00672 HAMP domain VM_05785 PF10689 Protein of unknown function (DUF2496) VM_05790 PF07445 Primosomal replication protein priC VM_05795 PF01925 Sulfite exporter TauE/SafE VM_05800 PF06733 DEAD_2 VM_05800 PF13307 Helicase C-terminal domain VM_05810 PF02810 SEC-C motif VM_05815 PF00563 EAL domain VM_05815 PF08668 HDOD domain VM_05820 PF00149 Calcineurin-like phosphoesterase VM_05825 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VM_05830 PF01406 tRNA synthetases class I (C) catalytic domain VM_05830 PF09190 DALR domain VM_05835 PF02075 Crossover junction endodeoxyribonuclease RuvC VM_05840 PF01330 RuvA N terminal domain VM_05840 PF07499 RuvA, C-terminal domain VM_05845 PF05496 Holliday junction DNA helicase RuvB P-loop domain VM_05845 PF05491 RuvB C-terminal winged helix domain VM_05845 PF17864 RuvB AAA lid domain VM_05850 PF01654 Cytochrome bd terminal oxidase subunit I VM_05855 PF02322 Cytochrome bd terminal oxidase subunit II VM_05860 PF08173 Membrane bound YbgT-like protein VM_05870 PF03061 Thioesterase superfamily VM_05875 PF01618 MotA/TolQ/ExbB proton channel family VM_05880 PF02472 Biopolymer transport protein ExbD/TolR VM_05890 PF04052 TolB amino-terminal domain VM_05890 PF07676 WD40-like Beta Propeller Repeat VM_05895 PF00691 OmpA family VM_05905 PF02445 Quinolinate synthetase A protein VM_05915 PF00072 Response regulator receiver domain VM_05915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_05915 PF00512 His Kinase A (phospho-acceptor) domain VM_05915 PF09308 LuxQ, periplasmic VM_05920 PF06610 L-alanine exporter VM_05925 PF01238 Phosphomannose isomerase type I VM_05930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_05930 PF02378 Phosphotransferase system, EIIC VM_05930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_05935 PF12833 Helix-turn-helix domain VM_05945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_05955 PF00392 Bacterial regulatory proteins, gntR family VM_05955 PF00155 Aminotransferase class I and II VM_05965 PF07971 Glycosyl hydrolase family 92 VM_05965 PF17678 Glycosyl hydrolase family 92 N-terminal domain VM_05970 PF17678 Glycosyl hydrolase family 92 N-terminal domain VM_05970 PF07971 Glycosyl hydrolase family 92 VM_05980 PF17678 Glycosyl hydrolase family 92 N-terminal domain VM_05980 PF07971 Glycosyl hydrolase family 92 VM_05985 PF07971 Glycosyl hydrolase family 92 VM_05985 PF17678 Glycosyl hydrolase family 92 N-terminal domain VM_06055 PF02195 ParB-like nuclease domain VM_06060 PF01507 Phosphoadenosine phosphosulfate reductase family VM_06060 PF11922 Domain of unknown function (DUF3440) VM_06065 PF11999 Protein of unknown function (DUF3494) VM_06065 PF02368 Bacterial Ig-like domain (group 2) VM_06070 PF16347 Domain of unknown function (DUF4976) VM_06070 PF00884 Sulfatase VM_06075 PF01970 Tripartite tricarboxylate transporter TctA family VM_06090 PF03466 LysR substrate binding domain VM_06090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_06105 PF01055 Glycosyl hydrolases family 31 VM_06105 PF13802 Galactose mutarotase-like VM_06105 PF17137 Domain of unknown function (DUF5110) VM_06105 PF16338 Domain of unknown function (DUF4968) VM_06110 PF02311 AraC-like ligand binding domain VM_06110 PF12833 Helix-turn-helix domain VM_06170 PF00437 Type II/IV secretion system protein VM_06195 PF16353 Domain of unknown function(DUF4981) VM_06195 PF02929 Beta galactosidase small chain VM_06195 PF00703 Glycosyl hydrolases family 2 VM_06195 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VM_06195 PF02837 Glycosyl hydrolases family 2, sugar binding domain VM_06205 PF01418 Helix-turn-helix domain, rpiR family VM_06205 PF01380 SIS domain VM_06210 PF03606 C4-dicarboxylate anaerobic carrier VM_06215 PF07687 Peptidase dimerisation domain VM_06215 PF01546 Peptidase family M20/M25/M40 VM_06220 PF03575 Peptidase family S51 VM_06225 PF00563 EAL domain VM_06225 PF00196 Bacterial regulatory proteins, luxR family VM_06230 PF00873 AcrB/AcrD/AcrF family VM_06235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VM_06240 PF08362 YcdC-like protein, C-terminal region VM_06240 PF00440 Bacterial regulatory proteins, tetR family VM_06245 PF00171 Aldehyde dehydrogenase family VM_06250 PF07383 Protein of unknown function (DUF1496) VM_06260 PF00440 Bacterial regulatory proteins, tetR family VM_06260 PF16295 Tetracyclin repressor-like, C-terminal domain VM_06265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VM_06265 PF09317 Domain of unknown function (DUF1974) VM_06265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VM_06265 PF02770 Acyl-CoA dehydrogenase, middle domain VM_06270 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VM_06270 PF12241 Trans-2-enoyl-CoA reductase catalytic region VM_06270 PF07055 Enoyl reductase FAD binding domain VM_06275 PF01176 Translation initiation factor 1A / IF-1 VM_06280 PF04376 Arginine-tRNA-protein transferase, N terminus VM_06280 PF04377 Arginine-tRNA-protein transferase, C terminus VM_06285 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VM_06295 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VM_06300 PF10692 Protein of unknown function (DUF2498) VM_06305 PF08272 Topoisomerase I zinc-ribbon-like VM_06305 PF01396 Topoisomerase DNA binding C4 zinc finger VM_06305 PF01131 DNA topoisomerase VM_06305 PF01751 Toprim domain VM_06315 PF00534 Glycosyl transferases group 1 VM_06315 PF08323 Starch synthase catalytic domain VM_06340 PF00356 Bacterial regulatory proteins, lacI family VM_06345 PF02613 Nitrate reductase delta subunit VM_06350 PF00072 Response regulator receiver domain VM_06350 PF00486 Transcriptional regulatory protein, C terminal VM_06355 PF01609 Transposase DDE domain VM_06355 PF02281 Transposase Tn5 dimerisation domain VM_06355 PF14706 Transposase DNA-binding VM_06360 PF02698 DUF218 domain VM_06370 PF17192 MukF middle domain VM_06370 PF17193 MukF C-terminal domain VM_06370 PF03882 MukF winged-helix domain VM_06375 PF04288 MukE-like family VM_06380 PF04310 MukB N-terminal VM_06380 PF16330 MukB hinge domain VM_06385 PF01037 Lrp/AsnC ligand binding domain VM_06390 PF01810 LysE type translocator VM_06395 PF04055 Radical SAM superfamily VM_06395 PF08497 Radical SAM N-terminal VM_06395 PF11842 Domain of unknown function (DUF3362) VM_06400 PF00563 EAL domain VM_06400 PF01590 GAF domain VM_06400 PF00990 Diguanylate cyclase, GGDEF domain VM_06400 PF00989 PAS fold VM_06405 PF00675 Insulinase (Peptidase family M16) VM_06405 PF05193 Peptidase M16 inactive domain VM_06420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_06420 PF03466 LysR substrate binding domain VM_06425 PF01717 Cobalamin-independent synthase, Catalytic domain VM_06425 PF08267 Cobalamin-independent synthase, N-terminal domain VM_06435 PF03795 YCII-related domain VM_06440 PF03061 Thioesterase superfamily VM_06445 PF04279 Intracellular septation protein A VM_06450 PF03707 Bacterial signalling protein N terminal repeat VM_06450 PF00990 Diguanylate cyclase, GGDEF domain VM_06450 PF00563 EAL domain VM_06460 PF02698 DUF218 domain VM_06465 PF01370 NAD dependent epimerase/dehydratase family VM_06475 PF01226 Formate/nitrite transporter VM_06485 PF06796 Periplasmic nitrate reductase protein NapE VM_06490 PF03264 NapC/NirT cytochrome c family, N-terminal region VM_06495 PF01568 Molydopterin dinucleotide binding domain VM_06495 PF18364 Molybdopterin oxidoreductase N-terminal domain VM_06495 PF00384 Molybdopterin oxidoreductase VM_06510 PF03193 RsgA GTPase VM_06520 PF01368 DHH family VM_06520 PF02833 DHHA2 domain VM_06535 PF00005 ABC transporter VM_06540 PF00005 ABC transporter VM_06540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_06545 PF00528 Binding-protein-dependent transport system inner membrane component VM_06545 PF12911 N-terminal TM domain of oligopeptide transport permease C VM_06550 PF00528 Binding-protein-dependent transport system inner membrane component VM_06555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_06560 PF02954 Bacterial regulatory protein, Fis family VM_06560 PF00158 Sigma-54 interaction domain VM_06565 PF04012 PspA/IM30 family VM_06580 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain VM_06580 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase VM_06585 PF13673 Acetyltransferase (GNAT) domain VM_06585 PF00958 GMP synthase C terminal domain VM_06585 PF00117 Glutamine amidotransferase class-I VM_06585 PF03352 Methyladenine glycosylase VM_06585 PF13302 Acetyltransferase (GNAT) domain VM_06590 PF01053 Cys/Met metabolism PLP-dependent enzyme VM_06595 PF13396 Phospholipase_D-nuclease N-terminal VM_06595 PF13091 PLD-like domain VM_06600 PF00209 Sodium:neurotransmitter symporter family VM_06605 PF00849 RNA pseudouridylate synthase VM_06610 PF01066 CDP-alcohol phosphatidyltransferase VM_06615 PF00005 ABC transporter VM_06620 PF00528 Binding-protein-dependent transport system inner membrane component VM_06625 PF13416 Bacterial extracellular solute-binding protein VM_06635 PF06945 Protein of unknown function (DUF1289) VM_06650 PF00005 ABC transporter VM_06655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VM_06660 PF03222 Tryptophan/tyrosine permease family VM_06670 PF00571 CBS domain VM_06670 PF03448 MgtE intracellular N domain VM_06670 PF01769 Divalent cation transporter VM_06675 PF00072 Response regulator receiver domain VM_06675 PF09456 RcsC Alpha-Beta-Loop (ABL) VM_06675 PF00512 His Kinase A (phospho-acceptor) domain VM_06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_06680 PF00990 Diguanylate cyclase, GGDEF domain VM_06680 PF00563 EAL domain VM_06680 PF03707 Bacterial signalling protein N terminal repeat VM_06690 PF01752 Collagenase VM_06690 PF04151 Bacterial pre-peptidase C-terminal domain VM_06690 PF08453 Peptidase family M9 N-terminal VM_06700 PF12793 Sugar transport-related sRNA regulator N-term VM_06700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_06720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_06720 PF00672 HAMP domain VM_06730 PF00132 Bacterial transferase hexapeptide (six repeats) VM_06740 PF00873 AcrB/AcrD/AcrF family VM_06745 PF13533 Biotin-lipoyl like VM_06755 PF01386 Ribosomal L25p family VM_06765 PF00486 Transcriptional regulatory protein, C terminal VM_06765 PF00072 Response regulator receiver domain VM_06775 PF04851 Type III restriction enzyme, res subunit VM_06775 PF00271 Helicase conserved C-terminal domain VM_06780 PF00849 RNA pseudouridylate synthase VM_06780 PF01479 S4 domain VM_06795 PF13460 NAD(P)H-binding VM_06795 PF11066 Protein of unknown function (DUF2867) VM_06800 PF01554 MatE VM_06805 PF00005 ABC transporter VM_06820 PF06965 Na+/H+ antiporter 1 VM_06825 PF01797 Transposase IS200 like VM_06830 PF00202 Aminotransferase class-III VM_06835 PF03435 Saccharopine dehydrogenase NADP binding domain VM_06835 PF16653 Saccharopine dehydrogenase C-terminal domain VM_06845 PF00691 OmpA family VM_06845 PF05736 OprF membrane domain VM_06850 PF02321 Outer membrane efflux protein VM_06860 PF01609 Transposase DDE domain VM_06860 PF02281 Transposase Tn5 dimerisation domain VM_06860 PF14706 Transposase DNA-binding VM_06875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_06875 PF03466 LysR substrate binding domain VM_06885 PF01863 Protein of unknown function DUF45 VM_06890 PF05971 RNA methyltransferase VM_06905 PF04204 Homoserine O-succinyltransferase VM_06925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VM_06940 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VM_06940 PF17203 Single cache domain 3 VM_06940 PF00989 PAS fold VM_06940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_06945 PF00072 Response regulator receiver domain VM_06955 PF00072 Response regulator receiver domain VM_06955 PF01584 CheW-like domain VM_06970 PF00072 Response regulator receiver domain VM_06970 PF00990 Diguanylate cyclase, GGDEF domain VM_06985 PF07690 Major Facilitator Superfamily VM_06990 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VM_06990 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VM_06995 PF08544 GHMP kinases C terminal VM_06995 PF00288 GHMP kinases N terminal domain VM_06995 PF10509 Galactokinase galactose-binding signature VM_07000 PF01263 Aldose 1-epimerase VM_07010 PF13402 Peptidase M60, enhancin and enhancin-like VM_07010 PF17291 N-terminal domain of M60-like peptidases VM_07010 PF13322 Domain of unknown function (DUF4092) VM_07015 PF04224 Protein of unknown function, DUF417 VM_07020 PF00199 Catalase VM_07020 PF06628 Catalase-related immune-responsive VM_07030 PF00080 Copper/zinc superoxide dismutase (SODC) VM_07055 PF00206 Lyase VM_07055 PF10415 Fumarase C C-terminus VM_07065 PF01521 Iron-sulphur cluster biosynthesis VM_07070 PF01458 Uncharacterized protein family (UPF0051) VM_07075 PF00005 ABC transporter VM_07080 PF01458 Uncharacterized protein family (UPF0051) VM_07085 PF00266 Aminotransferase class-V VM_07090 PF02657 Fe-S metabolism associated domain VM_07095 PF00462 Glutaredoxin VM_07100 PF07972 NrdI Flavodoxin like VM_07105 PF08343 Ribonucleotide reductase N-terminal VM_07105 PF00317 Ribonucleotide reductase, all-alpha domain VM_07105 PF02867 Ribonucleotide reductase, barrel domain VM_07110 PF00268 Ribonucleotide reductase, small chain VM_07115 PF00005 ABC transporter VM_07115 PF02687 FtsX-like permease family VM_07115 PF12704 MacB-like periplasmic core domain VM_07120 PF00005 ABC transporter VM_07120 PF12704 MacB-like periplasmic core domain VM_07120 PF02687 FtsX-like permease family VM_07125 PF02687 FtsX-like permease family VM_07125 PF12704 MacB-like periplasmic core domain VM_07145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_07145 PF03466 LysR substrate binding domain VM_07150 PF00141 Peroxidase VM_07155 PF00232 Glycosyl hydrolase family 1 VM_07160 PF00356 Bacterial regulatory proteins, lacI family VM_07165 PF01042 Endoribonuclease L-PSP VM_07170 PF04074 YhcH/YjgK/YiaL VM_07175 PF03009 Glycerophosphoryl diester phosphodiesterase family VM_07180 PF08220 DeoR-like helix-turn-helix domain VM_07180 PF00455 DeoR C terminal sensor domain VM_07185 PF17912 MalK OB fold domain VM_07185 PF00005 ABC transporter VM_07190 PF00528 Binding-protein-dependent transport system inner membrane component VM_07195 PF00528 Binding-protein-dependent transport system inner membrane component VM_07200 PF13416 Bacterial extracellular solute-binding protein VM_07215 PF01618 MotA/TolQ/ExbB proton channel family VM_07220 PF01618 MotA/TolQ/ExbB proton channel family VM_07225 PF02472 Biopolymer transport protein ExbD/TolR VM_07240 PF01068 ATP dependent DNA ligase domain VM_07240 PF14743 DNA ligase OB-like domain VM_07250 PF01554 MatE VM_07270 PF00877 NlpC/P60 family VM_07275 PF00672 HAMP domain VM_07275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_07275 PF12729 Four helix bundle sensory module for signal transduction VM_07290 PF00480 ROK family VM_07300 PF00994 Probable molybdopterin binding domain VM_07300 PF03454 MoeA C-terminal region (domain IV) VM_07300 PF03453 MoeA N-terminal region (domain I and II) VM_07305 PF12804 MobA-like NTP transferase domain VM_07310 PF00005 ABC transporter VM_07310 PF08402 TOBE domain VM_07315 PF00528 Binding-protein-dependent transport system inner membrane component VM_07320 PF12849 PBP superfamily domain VM_07325 PF00158 Sigma-54 interaction domain VM_07325 PF02954 Bacterial regulatory protein, Fis family VM_07325 PF00072 Response regulator receiver domain VM_07330 PF00512 His Kinase A (phospho-acceptor) domain VM_07330 PF00989 PAS fold VM_07330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_07335 PF12848 ABC transporter VM_07335 PF00005 ABC transporter VM_07340 PF02743 Cache domain VM_07340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_07340 PF00672 HAMP domain VM_07345 PF02634 FdhD/NarQ family VM_07365 PF02613 Nitrate reductase delta subunit VM_07375 PF01568 Molydopterin dinucleotide binding domain VM_07375 PF00384 Molybdopterin oxidoreductase VM_07375 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VM_07380 PF13247 4Fe-4S dicluster domain VM_07395 PF00909 Ammonium Transporter Family VM_07400 PF02146 Sir2 family VM_07405 PF04461 Protein of unknown function (DUF520) VM_07410 PF00793 DAHP synthetase I family VM_07425 PF17783 CvfB-like winged helix domain VM_07425 PF13509 S1 domain VM_07430 PF01189 16S rRNA methyltransferase RsmB/F VM_07430 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VM_07430 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VM_07435 PF02470 MlaD protein VM_07440 PF04403 Paraquat-inducible protein A VM_07445 PF00005 ABC transporter VM_07445 PF00664 ABC transporter transmembrane region VM_07450 PF13185 GAF domain VM_07455 PF04352 ProQ/FINO family VM_07455 PF17516 ProQ C-terminal domain VM_07460 PF03572 Peptidase family S41 VM_07460 PF17804 Tail specific protease N-terminal domain VM_07460 PF11818 C-terminal domain of tail specific protease (DUF3340) VM_07460 PF00595 PDZ domain VM_07470 PF01433 Peptidase family M1 domain VM_07470 PF11940 Domain of unknown function (DUF3458) Ig-like fold VM_07470 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VM_07480 PF05088 Bacterial NAD-glutamate dehydrogenase VM_07485 PF01180 Dihydroorotate dehydrogenase VM_07490 PF07126 Cell-division protein ZapC VM_07495 PF10672 S-adenosylmethionine-dependent methyltransferase VM_07495 PF02926 THUMP domain VM_07495 PF01170 Putative RNA methylase family UPF0020 VM_07515 PF04957 Ribosome modulation factor VM_07520 PF07977 FabA-like domain VM_07525 PF13654 AAA domain VM_07525 PF05362 Lon protease (S16) C-terminal proteolytic domain VM_07530 PF17414 MatP C-terminal ribbon-helix-helix domain VM_07530 PF06303 MatP N-terminal domain VM_07545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_07545 PF00512 His Kinase A (phospho-acceptor) domain VM_07545 PF09308 LuxQ, periplasmic VM_07545 PF00072 Response regulator receiver domain VM_07560 PF00115 Cytochrome C and Quinol oxidase polypeptide I VM_07575 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VM_07575 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VM_07585 PF00403 Heavy-metal-associated domain VM_07600 PF00027 Cyclic nucleotide-binding domain VM_07600 PF13545 Crp-like helix-turn-helix domain VM_07605 PF00582 Universal stress protein family VM_07610 PF01171 PP-loop family VM_07630 PF08402 TOBE domain VM_07630 PF00005 ABC transporter VM_07635 PF00528 Binding-protein-dependent transport system inner membrane component VM_07640 PF00528 Binding-protein-dependent transport system inner membrane component VM_07645 PF13416 Bacterial extracellular solute-binding protein VM_07650 PF13416 Bacterial extracellular solute-binding protein VM_07655 PF00171 Aldehyde dehydrogenase family VM_07660 PF00072 Response regulator receiver domain VM_07660 PF00196 Bacterial regulatory proteins, luxR family VM_07670 PF00512 His Kinase A (phospho-acceptor) domain VM_07670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_07670 PF00989 PAS fold VM_07675 PF00990 Diguanylate cyclase, GGDEF domain VM_07675 PF17155 Gammaproteobacterial periplasmic sensor domain VM_07690 PF01235 Sodium:alanine symporter family VM_07695 PF01810 LysE type translocator VM_07715 PF16671 Actin cross-linking domain VM_07715 PF04717 Type VI secretion system, phage-baseplate injector VM_07720 PF05638 Type VI secretion system effector, Hcp VM_07725 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VM_07730 PF08028 Acyl-CoA dehydrogenase, C-terminal domain VM_07740 PF00171 Aldehyde dehydrogenase family VM_07745 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase VM_07760 PF00171 Aldehyde dehydrogenase family VM_07765 PF01557 Fumarylacetoacetate (FAA) hydrolase family VM_07770 PF01557 Fumarylacetoacetate (FAA) hydrolase family VM_07775 PF03328 HpcH/HpaI aldolase/citrate lyase family VM_07780 PF01557 Fumarylacetoacetate (FAA) hydrolase family VM_07795 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VM_07800 PF01047 MarR family VM_07805 PF01613 Flavin reductase like domain VM_07815 PF00171 Aldehyde dehydrogenase family VM_07830 PF03401 Tripartite tricarboxylate transporter family receptor VM_07835 PF00582 Universal stress protein family VM_07840 PF01266 FAD dependent oxidoreductase VM_07850 PF02423 Ornithine cyclodeaminase/mu-crystallin family VM_07860 PF00270 DEAD/DEAH box helicase VM_07860 PF00271 Helicase conserved C-terminal domain VM_07865 PF13426 PAS domain VM_07865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_07865 PF08447 PAS fold VM_07870 PF02203 Tar ligand binding domain homologue VM_07870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_07870 PF00672 HAMP domain VM_07875 PF00893 Small Multidrug Resistance protein VM_07880 PF07690 Major Facilitator Superfamily VM_07885 PF03466 LysR substrate binding domain VM_07885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_07890 PF00012 Hsp70 protein VM_07895 PF01979 Amidohydrolase family VM_07905 PF02837 Glycosyl hydrolases family 2, sugar binding domain VM_07905 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VM_07905 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VM_07905 PF00703 Glycosyl hydrolases family 2 VM_07910 PF03994 Domain of Unknown Function (DUF350) VM_07920 PF03738 Glutathionylspermidine synthase preATP-grasp VM_07930 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VM_07930 PF00271 Helicase conserved C-terminal domain VM_07930 PF00270 DEAD/DEAH box helicase VM_07930 PF04408 Helicase associated domain (HA2) VM_07930 PF11898 Domain of unknown function (DUF3418) VM_07960 PF13188 PAS domain VM_07960 PF00990 Diguanylate cyclase, GGDEF domain VM_07960 PF03707 Bacterial signalling protein N terminal repeat VM_07960 PF00563 EAL domain VM_07975 PF00012 Hsp70 protein VM_07980 PF00990 Diguanylate cyclase, GGDEF domain VM_07980 PF17158 Membrane-associated sensor, integral membrane domain VM_07990 PF00563 EAL domain VM_07990 PF03707 Bacterial signalling protein N terminal repeat VM_07990 PF00990 Diguanylate cyclase, GGDEF domain VM_08010 PF06508 Queuosine biosynthesis protein QueC VM_08015 PF04055 Radical SAM superfamily VM_08025 PF10414 Sirohaem synthase dimerisation region VM_08025 PF14824 Sirohaem biosynthesis protein central VM_08025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VM_08030 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_08035 PF00528 Binding-protein-dependent transport system inner membrane component VM_08040 PF00528 Binding-protein-dependent transport system inner membrane component VM_08045 PF00005 ABC transporter VM_08050 PF01027 Inhibitor of apoptosis-promoting Bax1 VM_08055 PF04358 DsrC like protein VM_08060 PF00708 Acylphosphatase VM_08065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_08065 PF00672 HAMP domain VM_08070 PF17785 PUA-like domain VM_08070 PF10672 S-adenosylmethionine-dependent methyltransferase VM_08075 PF00990 Diguanylate cyclase, GGDEF domain VM_08080 PF08534 Redoxin VM_08080 PF00462 Glutaredoxin VM_08085 PF01627 Hpt domain VM_08085 PF00512 His Kinase A (phospho-acceptor) domain VM_08085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_08085 PF00672 HAMP domain VM_08085 PF00072 Response regulator receiver domain VM_08085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VM_08090 PF00072 Response regulator receiver domain VM_08095 PF02798 Glutathione S-transferase, N-terminal domain VM_08095 PF14497 Glutathione S-transferase, C-terminal domain VM_08105 PF04209 homogentisate 1,2-dioxygenase VM_08110 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VM_08115 PF01546 Peptidase family M20/M25/M40 VM_08115 PF07687 Peptidase dimerisation domain VM_08130 PF16177 Acetyl-coenzyme A synthetase N-terminus VM_08130 PF13193 AMP-binding enzyme C-terminal domain VM_08130 PF00501 AMP-binding enzyme VM_08135 PF04303 PrpF protein VM_08140 PF00694 Aconitase C-terminal domain VM_08140 PF00330 Aconitase family (aconitate hydratase) VM_08145 PF00285 Citrate synthase, C-terminal domain VM_08175 PF01970 Tripartite tricarboxylate transporter TctA family VM_08180 PF00990 Diguanylate cyclase, GGDEF domain VM_08180 PF00072 Response regulator receiver domain VM_08185 PF02653 Branched-chain amino acid transport system / permease component VM_08190 PF00005 ABC transporter VM_08195 PF13407 Periplasmic binding protein domain VM_08220 PF00072 Response regulator receiver domain VM_08220 PF00486 Transcriptional regulatory protein, C terminal VM_08225 PF00512 His Kinase A (phospho-acceptor) domain VM_08225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_08225 PF00672 HAMP domain VM_08230 PF06629 MltA-interacting protein MipA VM_08240 PF00072 Response regulator receiver domain VM_08240 PF02954 Bacterial regulatory protein, Fis family VM_08240 PF00158 Sigma-54 interaction domain VM_08245 PF00512 His Kinase A (phospho-acceptor) domain VM_08245 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_08245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_08250 PF00939 Sodium:sulfate symporter transmembrane region VM_08255 PF00672 HAMP domain VM_08255 PF12729 Four helix bundle sensory module for signal transduction VM_08255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_08260 PF01168 Alanine racemase, N-terminal domain VM_08260 PF00842 Alanine racemase, C-terminal domain VM_08265 PF00892 EamA-like transporter family VM_08270 PF01609 Transposase DDE domain VM_08270 PF02281 Transposase Tn5 dimerisation domain VM_08270 PF14706 Transposase DNA-binding VM_08285 PF13302 Acetyltransferase (GNAT) domain VM_08290 PF00158 Sigma-54 interaction domain VM_08290 PF18024 Helix-turn-helix domain VM_08295 PF05128 Domain of unknown function (DUF697) VM_08300 PF04317 YcjX-like family, DUF463 VM_08315 PF04715 Anthranilate synthase component I, N terminal region VM_08315 PF00425 chorismate binding enzyme VM_08320 PF00293 NUDIX domain VM_08325 PF03222 Tryptophan/tyrosine permease family VM_08330 PF03315 Serine dehydratase beta chain VM_08330 PF03313 Serine dehydratase alpha chain VM_08335 PF01242 6-pyruvoyl tetrahydropterin synthase VM_08340 PF00672 HAMP domain VM_08340 PF02743 Cache domain VM_08340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_08345 PF00152 tRNA synthetases class II (D, K and N) VM_08345 PF01336 OB-fold nucleic acid binding domain VM_08350 PF08543 Phosphomethylpyrimidine kinase VM_08355 PF12464 Maltose acetyltransferase VM_08355 PF00132 Bacterial transferase hexapeptide (six repeats) VM_08360 PF01966 HD domain VM_08360 PF00672 HAMP domain VM_08365 PF00155 Aminotransferase class I and II VM_08380 PF00672 HAMP domain VM_08380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_08380 PF17200 Single Cache domain 2 VM_08385 PF04349 Periplasmic glucan biosynthesis protein, MdoG VM_08390 PF13506 Glycosyl transferase family 21 VM_08400 PF04794 YdjC-like protein VM_08405 PF02056 Family 4 glycosyl hydrolase VM_08405 PF11975 Family 4 glycosyl hydrolase C-terminal domain VM_08410 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VM_08415 PF02378 Phosphotransferase system, EIIC VM_08420 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_08425 PF01522 Polysaccharide deacetylase VM_08430 PF02028 BCCT, betaine/carnitine/choline family transporter VM_08435 PF01047 MarR family VM_08440 PF00196 Bacterial regulatory proteins, luxR family VM_08440 PF00072 Response regulator receiver domain VM_08445 PF17200 Single Cache domain 2 VM_08445 PF07730 Histidine kinase VM_08450 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VM_08460 PF03480 Bacterial extracellular solute-binding protein, family 7 VM_08475 PF00753 Metallo-beta-lactamase superfamily VM_08480 PF05951 Bacterial protein of unknown function (DUF882) VM_08510 PF01609 Transposase DDE domain VM_08510 PF02281 Transposase Tn5 dimerisation domain VM_08510 PF14706 Transposase DNA-binding VM_08515 PF00925 GTP cyclohydrolase II VM_08525 PF07690 Major Facilitator Superfamily VM_08540 PF00313 'Cold-shock' DNA-binding domain VM_08550 PF03918 Cytochrome C biogenesis protein VM_08555 PF08534 Redoxin VM_08560 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VM_08560 PF01578 Cytochrome C assembly protein VM_08565 PF03916 Polysulphide reductase, NrfD VM_08570 PF13247 4Fe-4S dicluster domain VM_08580 PF02335 Cytochrome c552 VM_08590 PF00521 DNA gyrase/topoisomerase IV, subunit A VM_08590 PF03989 DNA gyrase C-terminal domain, beta-propeller VM_08600 PF00317 Ribonucleotide reductase, all-alpha domain VM_08600 PF03477 ATP cone domain VM_08600 PF02867 Ribonucleotide reductase, barrel domain VM_08605 PF00268 Ribonucleotide reductase, small chain VM_08610 PF00111 2Fe-2S iron-sulfur cluster binding domain VM_08610 PF00970 Oxidoreductase FAD-binding domain VM_08610 PF00175 Oxidoreductase NAD-binding domain VM_08620 PF00994 Probable molybdopterin binding domain VM_08635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_08635 PF17200 Single Cache domain 2 VM_08635 PF00672 HAMP domain VM_08650 PF00005 ABC transporter VM_08655 PF01032 FecCD transport family VM_08660 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VM_08670 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VM_08675 PF02654 Cobalamin-5-phosphate synthase VM_08680 PF02277 Phosphoribosyltransferase VM_08685 PF01641 SelR domain VM_08695 PF08411 Exonuclease C-terminal VM_08695 PF00929 Exonuclease VM_08700 PF03788 LrgA family VM_08705 PF04172 LrgB-like family VM_08710 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VM_08710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VM_08720 PF02222 ATP-grasp domain VM_08725 PF05724 Thiopurine S-methyltransferase (TPMT) VM_08740 PF00216 Bacterial DNA-binding protein VM_08745 PF03147 Ferredoxin-fold anticodon binding domain VM_08745 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VM_08745 PF03483 B3/4 domain VM_08745 PF03484 tRNA synthetase B5 domain VM_08745 PF01588 Putative tRNA binding domain VM_08750 PF01409 tRNA synthetases class II core domain (F) VM_08750 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VM_08755 PF00583 Acetyltransferase (GNAT) family VM_08785 PF01066 CDP-alcohol phosphatidyltransferase VM_08790 PF01541 GIY-YIG catalytic domain VM_08790 PF08459 UvrC Helix-hairpin-helix N-terminal VM_08790 PF02151 UvrB/uvrC motif VM_08795 PF00196 Bacterial regulatory proteins, luxR family VM_08795 PF00072 Response regulator receiver domain VM_08800 PF00136 DNA polymerase family B VM_08800 PF03104 DNA polymerase family B, exonuclease domain VM_08805 PF12792 CSS motif domain associated with EAL VM_08805 PF00563 EAL domain VM_08815 PF09285 Elongation factor P, C-terminal VM_08815 PF08207 Elongation factor P (EF-P) KOW-like domain VM_08815 PF01132 Elongation factor P (EF-P) OB domain VM_08820 PF04269 Protein of unknown function, DUF440 VM_08830 PF07702 UTRA domain VM_08830 PF00392 Bacterial regulatory proteins, gntR family VM_08835 PF01979 Amidohydrolase family VM_08840 PF00491 Arginase family VM_08845 PF17391 Urocanase N-terminal domain VM_08845 PF17392 Urocanase C-terminal domain VM_08845 PF01175 Urocanase Rossmann-like domain VM_08850 PF00221 Aromatic amino acid lyase VM_08865 PF04191 Phospholipid methyltransferase VM_08870 PF13183 4Fe-4S dicluster domain VM_08870 PF01565 FAD binding domain VM_08870 PF02913 FAD linked oxidases, C-terminal domain VM_08885 PF00691 OmpA family VM_08885 PF13488 Glycine zipper VM_08905 PF01259 SAICAR synthetase VM_08915 PF03949 Malic enzyme, NAD binding domain VM_08915 PF00390 Malic enzyme, N-terminal domain VM_08925 PF02698 DUF218 domain VM_08930 PF08448 PAS fold VM_08930 PF00990 Diguanylate cyclase, GGDEF domain VM_08945 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_08950 PF00664 ABC transporter transmembrane region VM_08950 PF00005 ABC transporter VM_08955 PF00005 ABC transporter VM_08955 PF00664 ABC transporter transmembrane region VM_08960 PF00849 RNA pseudouridylate synthase VM_08960 PF01479 S4 domain VM_08965 PF01300 Telomere recombination VM_08970 PF02811 PHP domain VM_08975 PF08056 Tryptophan operon leader peptide VM_08980 PF04715 Anthranilate synthase component I, N terminal region VM_08980 PF00425 chorismate binding enzyme VM_08985 PF00117 Glutamine amidotransferase class-I VM_08990 PF00591 Glycosyl transferase family, a/b domain VM_08990 PF02885 Glycosyl transferase family, helical bundle domain VM_08995 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VM_08995 PF00218 Indole-3-glycerol phosphate synthase VM_09000 PF00291 Pyridoxal-phosphate dependent enzyme VM_09005 PF00290 Tryptophan synthase alpha chain VM_09010 PF00375 Sodium:dicarboxylate symporter family VM_09015 PF01797 Transposase IS200 like VM_09020 PF00265 Thymidine kinase VM_09025 PF01336 OB-fold nucleic acid binding domain VM_09025 PF02938 GAD domain VM_09025 PF00152 tRNA synthetases class II (D, K and N) VM_09030 PF01904 Protein of unknown function DUF72 VM_09035 PF13649 Methyltransferase domain VM_09040 PF08003 Protein of unknown function (DUF1698) VM_09045 PF18030 RimK PreATP-grasp domain VM_09045 PF08443 RimK-like ATP-grasp domain VM_09060 PF00266 Aminotransferase class-V VM_09070 PF00989 PAS fold VM_09070 PF00512 His Kinase A (phospho-acceptor) domain VM_09070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_09090 PF04994 TfoX C-terminal domain VM_09090 PF04993 TfoX N-terminal domain VM_09100 PF03956 Lysine exporter LysO VM_09110 PF00282 Pyridoxal-dependent decarboxylase conserved domain VM_09115 PF01380 SIS domain VM_09115 PF01418 Helix-turn-helix domain, rpiR family VM_09120 PF00465 Iron-containing alcohol dehydrogenase VM_09130 PF00462 Glutaredoxin VM_09135 PF06826 Predicted Permease Membrane Region VM_09135 PF02080 TrkA-C domain VM_09140 PF00004 ATPase family associated with various cellular activities (AAA) VM_09140 PF07724 AAA domain (Cdc48 subfamily) VM_09140 PF17871 AAA lid domain VM_09140 PF02861 Clp amino terminal domain, pathogenicity island component VM_09140 PF10431 C-terminal, D2-small domain, of ClpB protein VM_09145 PF02617 ATP-dependent Clp protease adaptor protein ClpS VM_09150 PF00313 'Cold-shock' DNA-binding domain VM_09155 PF01797 Transposase IS200 like VM_09160 PF03971 Monomeric isocitrate dehydrogenase VM_09165 PF00849 RNA pseudouridylate synthase VM_09170 PF01502 Phosphoribosyl-AMP cyclohydrolase VM_09170 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VM_09175 PF00977 Histidine biosynthesis protein VM_09180 PF00977 Histidine biosynthesis protein VM_09185 PF00117 Glutamine amidotransferase class-I VM_09190 PF08645 Polynucleotide kinase 3 phosphatase VM_09190 PF00475 Imidazoleglycerol-phosphate dehydratase VM_09195 PF00155 Aminotransferase class I and II VM_09200 PF00815 Histidinol dehydrogenase VM_09205 PF01634 ATP phosphoribosyltransferase VM_09205 PF08029 HisG, C-terminal domain VM_09210 PF03553 Na+/H+ antiporter family VM_09215 PF00816 H-NS histone family VM_09220 PF00294 pfkB family carbohydrate kinase VM_09230 PF04356 Protein of unknown function (DUF489) VM_09235 PF08328 Adenylosuccinate lyase C-terminal VM_09235 PF00206 Lyase VM_09240 PF16036 Chalcone isomerase-like VM_09265 PF00106 short chain dehydrogenase VM_09275 PF01435 Peptidase family M48 VM_09290 PF08241 Methyltransferase domain VM_09295 PF00155 Aminotransferase class I and II VM_09300 PF04055 Radical SAM superfamily VM_09300 PF06968 Biotin and Thiamin Synthesis associated domain VM_09305 PF00202 Aminotransferase class-III VM_09310 PF02403 Seryl-tRNA synthetase N-terminal domain VM_09310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VM_09315 PF00004 ATPase family associated with various cellular activities (AAA) VM_09315 PF16193 AAA C-terminal domain VM_09315 PF12002 MgsA AAA+ ATPase C terminal VM_09320 PF03548 Outer membrane lipoprotein carrier protein LolA VM_09325 PF07516 SecA Wing and Scaffold domain VM_09325 PF07517 SecA DEAD-like domain VM_09325 PF02810 SEC-C motif VM_09325 PF01043 SecA preprotein cross-linking domain VM_09330 PF01207 Dihydrouridine synthase (Dus) VM_09335 PF05230 MASE2 domain VM_09335 PF00990 Diguanylate cyclase, GGDEF domain VM_09340 PF00005 ABC transporter VM_09345 PF02653 Branched-chain amino acid transport system / permease component VM_09355 PF09905 DNA-binding protein VF530 VM_09360 PF04217 Protein of unknown function, DUF412 VM_09365 PF00871 Acetokinase family VM_09370 PF07085 DRTGG domain VM_09370 PF01515 Phosphate acetyl/butaryl transferase VM_09375 PF13409 Glutathione S-transferase, N-terminal domain VM_09380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_09380 PF00005 ABC transporter VM_09385 PF00005 ABC transporter VM_09385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_09390 PF00528 Binding-protein-dependent transport system inner membrane component VM_09390 PF12911 N-terminal TM domain of oligopeptide transport permease C VM_09395 PF00528 Binding-protein-dependent transport system inner membrane component VM_09400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_09410 PF08448 PAS fold VM_09410 PF13188 PAS domain VM_09410 PF00072 Response regulator receiver domain VM_09410 PF00512 His Kinase A (phospho-acceptor) domain VM_09410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_09415 PF00072 Response regulator receiver domain VM_09415 PF00158 Sigma-54 interaction domain VM_09415 PF02954 Bacterial regulatory protein, Fis family VM_09420 PF03707 Bacterial signalling protein N terminal repeat VM_09420 PF13188 PAS domain VM_09420 PF00990 Diguanylate cyclase, GGDEF domain VM_09420 PF00563 EAL domain VM_09425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_09425 PF00512 His Kinase A (phospho-acceptor) domain VM_09430 PF00512 His Kinase A (phospho-acceptor) domain VM_09430 PF00989 PAS fold VM_09430 PF13188 PAS domain VM_09430 PF13426 PAS domain VM_09430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_09440 PF00072 Response regulator receiver domain VM_09455 PF01300 Telomere recombination VM_09455 PF03481 Putative GTP-binding controlling metal-binding VM_09475 PF01161 Phosphatidylethanolamine-binding protein VM_09485 PF00704 Glycosyl hydrolases family 18 VM_09485 PF06483 Chitinase C VM_09490 PF01116 Fructose-bisphosphate aldolase class-II VM_09495 PF01979 Amidohydrolase family VM_09500 PF03610 PTS system fructose IIA component VM_09505 PF03613 PTS system mannose/fructose/sorbose family IID component VM_09510 PF03609 PTS system sorbose-specific iic component VM_09515 PF03830 PTS system sorbose subfamily IIB component VM_09520 PF01380 SIS domain VM_09525 PF08013 Tagatose 6 phosphate kinase VM_09530 PF00455 DeoR C terminal sensor domain VM_09530 PF08220 DeoR-like helix-turn-helix domain VM_09535 PF00455 DeoR C terminal sensor domain VM_09535 PF08220 DeoR-like helix-turn-helix domain VM_09550 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VM_09550 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VM_09555 PF01022 Bacterial regulatory protein, arsR family VM_09560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VM_09565 PF00893 Small Multidrug Resistance protein VM_09570 PF00893 Small Multidrug Resistance protein VM_09575 PF01323 DSBA-like thioredoxin domain VM_09595 PF00005 ABC transporter VM_09600 PF01497 Periplasmic binding protein VM_09605 PF01032 FecCD transport family VM_09610 PF04183 IucA / IucC family VM_09610 PF06276 Ferric iron reductase FhuF-like transporter VM_09620 PF04183 IucA / IucC family VM_09620 PF06276 Ferric iron reductase FhuF-like transporter VM_09625 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) VM_09630 PF07715 TonB-dependent Receptor Plug Domain VM_09630 PF00593 TonB dependent receptor VM_09640 PF00672 HAMP domain VM_09640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_09665 PF13289 SIR2-like domain VM_09670 PF11798 IMS family HHH motif VM_09670 PF11799 impB/mucB/samB family C-terminal domain VM_09670 PF00817 impB/mucB/samB family VM_09670 PF13438 Domain of unknown function (DUF4113) VM_09675 PF00717 Peptidase S24-like VM_09755 PF01381 Helix-turn-helix VM_09780 PF00990 Diguanylate cyclase, GGDEF domain VM_09780 PF00563 EAL domain VM_09780 PF03707 Bacterial signalling protein N terminal repeat VM_09790 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VM_09805 PF13404 AsnC-type helix-turn-helix domain VM_09805 PF01037 Lrp/AsnC ligand binding domain VM_09810 PF00291 Pyridoxal-phosphate dependent enzyme VM_09815 PF08496 Peptidase family S49 N-terminal VM_09815 PF01343 Peptidase family S49 VM_09820 PF00106 short chain dehydrogenase VM_09825 PF03692 Putative zinc- or iron-chelating domain VM_09830 PF03692 Putative zinc- or iron-chelating domain VM_09835 PF13662 Toprim domain VM_09835 PF02132 RecR protein VM_09840 PF02575 YbaB/EbfC DNA-binding family VM_09845 PF12170 DNA polymerase III tau subunit V interacting with alpha VM_09845 PF12169 DNA polymerase III subunits gamma and tau domain III VM_09845 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VM_09850 PF00156 Phosphoribosyl transferase domain VM_09855 PF04304 Protein of unknown function (DUF454) VM_09865 PF00072 Response regulator receiver domain VM_09870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_09870 PF03466 LysR substrate binding domain VM_09875 PF00881 Nitroreductase family VM_09880 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VM_09880 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VM_09880 PF00378 Enoyl-CoA hydratase/isomerase VM_09885 PF00108 Thiolase, N-terminal domain VM_09885 PF02803 Thiolase, C-terminal domain VM_09900 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VM_09905 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VM_09910 PF01451 Low molecular weight phosphotyrosine protein phosphatase VM_09915 PF12557 Cob(I)alamin adenosyltransferase N terminal VM_09915 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VM_09920 PF05170 AsmA family VM_09925 PF00485 Phosphoribulokinase / Uridine kinase family VM_09930 PF10609 NUBPL iron-transfer P-loop NTPase VM_09935 PF01588 Putative tRNA binding domain VM_09935 PF09334 tRNA synthetases class I (M) VM_09945 PF01048 Phosphorylase superfamily VM_09950 PF00403 Heavy-metal-associated domain VM_09955 PF00478 IMP dehydrogenase / GMP reductase domain VM_09955 PF00571 CBS domain VM_09960 PF00990 Diguanylate cyclase, GGDEF domain VM_09965 PF02391 MoaE protein VM_09970 PF02597 ThiS family VM_09975 PF01967 MoaC family VM_09980 PF00994 Probable molybdopterin binding domain VM_09985 PF06463 Molybdenum Cofactor Synthesis C VM_09985 PF04055 Radical SAM superfamily VM_09990 PF01933 Uncharacterised protein family UPF0052 VM_09995 PF01627 Hpt domain VM_10000 PF02954 Bacterial regulatory protein, Fis family VM_10000 PF00158 Sigma-54 interaction domain VM_10000 PF00072 Response regulator receiver domain VM_10005 PF00271 Helicase conserved C-terminal domain VM_10005 PF04851 Type III restriction enzyme, res subunit VM_10005 PF02151 UvrB/uvrC motif VM_10005 PF12344 Ultra-violet resistance protein B VM_10005 PF17757 UvrB interaction domain VM_10015 PF03466 LysR substrate binding domain VM_10015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_10020 PF00884 Sulfatase VM_10025 PF04055 Radical SAM superfamily VM_10025 PF13186 Iron-sulfur cluster-binding domain VM_10030 PF07726 ATPase family associated with various cellular activities (AAA) VM_10030 PF17863 AAA lid domain VM_10045 PF00092 von Willebrand factor type A domain VM_10065 PF02508 Rnf-Nqr subunit, membrane protein VM_10070 PF04060 Putative Fe-S cluster VM_10075 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VM_10075 PF12838 4Fe-4S dicluster domain VM_10075 PF13375 RnfC Barrel sandwich hybrid domain VM_10075 PF10531 SLBB domain VM_10080 PF03116 NQR2, RnfD, RnfE family VM_10085 PF04205 FMN-binding domain VM_10090 PF02508 Rnf-Nqr subunit, membrane protein VM_10095 PF00633 Helix-hairpin-helix motif VM_10095 PF00730 HhH-GPD superfamily base excision DNA repair protein VM_10095 PF10576 Iron-sulfur binding domain of endonuclease III VM_10100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VM_10105 PF01609 Transposase DDE domain VM_10105 PF02281 Transposase Tn5 dimerisation domain VM_10105 PF14706 Transposase DNA-binding VM_10110 PF10952 Protein of unknown function (DUF2753) VM_10115 PF00691 OmpA family VM_10115 PF18393 MotY N-terminal domain VM_10120 PF00929 Exonuclease VM_10125 PF03553 Na+/H+ antiporter family VM_10125 PF13726 Na+-H+ antiporter family VM_10130 PF00156 Phosphoribosyl transferase domain VM_10135 PF02674 Colicin V production protein VM_10140 PF05036 Sporulation related domain VM_10145 PF08245 Mur ligase middle domain VM_10145 PF02875 Mur ligase family, glutamate ligase domain VM_10150 PF17848 Acetyl-coA carboxylase zinc finger domain VM_10150 PF01039 Carboxyl transferase domain VM_10155 PF01416 tRNA pseudouridine synthase VM_10165 PF00749 tRNA synthetases class I (E and Q), catalytic domain VM_10165 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VM_10170 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VM_10170 PF02378 Phosphotransferase system, EIIC VM_10170 PF00367 phosphotransferase system, EIIB VM_10175 PF01979 Amidohydrolase family VM_10180 PF00480 ROK family VM_10180 PF01047 MarR family VM_10185 PF02254 TrkA-N domain VM_10185 PF00999 Sodium/hydrogen exchanger family VM_10190 PF00733 Asparagine synthase VM_10190 PF13537 Glutamine amidotransferase domain VM_10195 PF02357 Transcription termination factor nusG VM_10200 PF00854 POT family VM_10205 PF00762 Ferrochelatase VM_10210 PF05191 Adenylate kinase, active site lid VM_10215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_10215 PF00183 Hsp90 protein VM_10220 PF00486 Transcriptional regulatory protein, C terminal VM_10225 PF17323 Trans-membrane regulatory protein ToxS VM_10235 PF12850 Calcineurin-like phosphoesterase superfamily domain VM_10240 PF08338 Domain of unknown function (DUF1731) VM_10240 PF01370 NAD dependent epimerase/dehydratase family VM_10245 PF00106 short chain dehydrogenase VM_10250 PF00085 Thioredoxin VM_10255 PF01145 SPFH domain / Band 7 family VM_10255 PF16200 C-terminal region of band_7 VM_10260 PF01957 NfeD-like C-terminal, partner-binding VM_10265 PF13411 MerR HTH family regulatory protein VM_10275 PF13609 Gram-negative porin VM_10280 PF12826 Helix-hairpin-helix motif VM_10280 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VM_10280 PF03120 NAD-dependent DNA ligase OB-fold domain VM_10280 PF01653 NAD-dependent DNA ligase adenylation domain VM_10280 PF00533 BRCA1 C Terminus (BRCT) domain VM_10285 PF04354 ZipA, C-terminal FtsZ-binding domain VM_10295 PF00291 Pyridoxal-phosphate dependent enzyme VM_10305 PF00381 PTS HPr component phosphorylation site VM_10310 PF05524 PEP-utilising enzyme, N-terminal VM_10310 PF02896 PEP-utilising enzyme, TIM barrel domain VM_10310 PF00391 PEP-utilising enzyme, mobile domain VM_10315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VM_10320 PF01494 FAD binding domain VM_10325 PF01938 TRAM domain VM_10325 PF04055 Radical SAM superfamily VM_10325 PF00919 Uncharacterized protein family UPF0004 VM_10330 PF02562 PhoH-like protein VM_10335 PF02130 Uncharacterized protein family UPF0054 VM_10340 PF03471 Transporter associated domain VM_10340 PF00571 CBS domain VM_10345 PF00795 Carbon-nitrogen hydrolase VM_10350 PF07295 Zinc-ribbon containing domain VM_10355 PF08264 Anticodon-binding domain of tRNA VM_10355 PF00133 tRNA synthetases class I (I, L, M and V) VM_10355 PF13603 Leucyl-tRNA synthetase, Domain 2 VM_10360 PF04390 Lipopolysaccharide-assembly VM_10365 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VM_10365 PF06144 DNA polymerase III, delta subunit VM_10375 PF02590 Predicted SPOUT methyltransferase VM_10380 PF03717 Penicillin-binding Protein dimerisation domain VM_10380 PF00905 Penicillin binding protein transpeptidase domain VM_10385 PF01098 Cell cycle protein VM_10390 PF03330 Lytic transglycolase VM_10390 PF05036 Sporulation related domain VM_10395 PF07943 Penicillin-binding protein 5, C-terminal domain VM_10395 PF00768 D-alanyl-D-alanine carboxypeptidase VM_10400 PF04359 Protein of unknown function (DUF493) VM_10405 PF03099 Biotin/lipoate A/B protein ligase family VM_10410 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VM_10410 PF04055 Radical SAM superfamily VM_10420 PF00464 Serine hydroxymethyltransferase VM_10440 PF02706 Chain length determinant protein VM_10440 PF13614 AAA domain VM_10440 PF13807 G-rich domain on putative tyrosine kinase VM_10445 PF02563 Polysaccharide biosynthesis/export protein VM_10445 PF10531 SLBB domain VM_10445 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VM_10455 PF02397 Bacterial sugar transferase VM_10470 PF12561 ToxR activated gene A lipoprotein domain VM_10470 PF17945 Beta/Gamma crystallin VM_10485 PF03808 Glycosyl transferase WecB/TagA/CpsF family VM_10495 PF13439 Glycosyltransferase Family 4 VM_10495 PF00534 Glycosyl transferases group 1 VM_10505 PF06426 Serine acetyltransferase, N-terminal VM_10505 PF00132 Bacterial transferase hexapeptide (six repeats) VM_10530 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VM_10530 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VM_10530 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VM_10535 PF02350 UDP-N-acetylglucosamine 2-epimerase VM_10545 PF00873 AcrB/AcrD/AcrF family VM_10550 PF13533 Biotin-lipoyl like VM_10585 PF00512 His Kinase A (phospho-acceptor) domain VM_10585 PF00672 HAMP domain VM_10585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_10590 PF00486 Transcriptional regulatory protein, C terminal VM_10590 PF00072 Response regulator receiver domain VM_10595 PF00128 Alpha amylase, catalytic domain VM_10595 PF16657 Maltogenic Amylase, C-terminal domain VM_10600 PF00367 phosphotransferase system, EIIB VM_10600 PF02378 Phosphotransferase system, EIIC VM_10605 PF00356 Bacterial regulatory proteins, lacI family VM_10615 PF09383 NIL domain VM_10615 PF00005 ABC transporter VM_10620 PF00528 Binding-protein-dependent transport system inner membrane component VM_10625 PF03180 NLPA lipoprotein VM_10630 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VM_10635 PF07348 Syd protein (SUKH-2) VM_10640 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VM_10640 PF14489 QueF-like protein VM_10650 PF00990 Diguanylate cyclase, GGDEF domain VM_10655 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VM_10655 PF03641 Possible lysine decarboxylase VM_10655 PF11892 Domain of unknown function (DUF3412) VM_10660 PF01367 5'-3' exonuclease, C-terminal SAM fold VM_10660 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VM_10665 PF04241 Protein of unknown function (DUF423) VM_10670 PF03466 LysR substrate binding domain VM_10670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_10680 PF02926 THUMP domain VM_10680 PF02568 Thiamine biosynthesis protein (ThiI) VM_10685 PF13677 Membrane MotB of proton-channel complex MotA/MotB VM_10685 PF00691 OmpA family VM_10690 PF01618 MotA/TolQ/ExbB proton channel family VM_10695 PF02609 Exonuclease VII small subunit VM_10700 PF00348 Polyprenyl synthetase VM_10705 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VM_10705 PF02780 Transketolase, C-terminal domain VM_10705 PF02779 Transketolase, pyrimidine binding domain VM_10710 PF00849 RNA pseudouridylate synthase VM_10740 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VM_10745 PF03806 AbgT putative transporter family VM_10750 PF00444 Ribosomal protein L36 VM_10755 PF01197 Ribosomal protein L31 VM_10760 PF01980 tRNA-methyltransferase O VM_10760 PF18389 TrmO C-terminal domain VM_10765 PF04073 Aminoacyl-tRNA editing domain VM_10765 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VM_10765 PF03129 Anticodon binding domain VM_10775 PF06786 Uncharacterised protein family (UPF0253) VM_10785 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VM_10785 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VM_10785 PF02769 AIR synthase related protein, C-terminal domain VM_10795 PF01464 Transglycosylase SLT domain VM_10795 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_10805 PF14437 MafB19-like deaminase VM_10810 PF03806 AbgT putative transporter family VM_10845 PF01556 DnaJ C terminal domain VM_10845 PF00226 DnaJ domain VM_10845 PF00684 DnaJ central domain VM_10850 PF00012 Hsp70 protein VM_10855 PF01025 GrpE VM_10860 PF01513 ATP-NAD kinase VM_10865 PF02463 RecF/RecN/SMC N terminal domain VM_10870 PF04355 SmpA / OmlA family VM_10875 PF03658 RnfH family Ubiquitin VM_10880 PF03364 Polyketide cyclase / dehydrase and lipid transport VM_10885 PF01668 SmpB protein VM_10895 PF13356 Arm DNA-binding domain VM_10895 PF00589 Phage integrase family VM_10905 PF13693 Winged helix-turn-helix DNA-binding VM_10910 PF02316 Mu DNA-binding domain VM_10910 PF02914 Bacteriophage Mu transposase VM_10910 PF09039 Mu DNA binding, I gamma subdomain VM_10910 PF09299 Mu transposase, C-terminal VM_10915 PF13401 AAA domain VM_10915 PF09077 Mu B transposition protein, C terminal VM_11035 PF08461 Ribonuclease R winged-helix domain VM_11040 PF11985 Protein of unknown function (DUF3486) VM_11045 PF03237 Terminase-like family VM_11050 PF06074 Protein of unknown function (DUF935) VM_11080 PF10124 Mu-like prophage major head subunit gpT VM_11090 PF07030 Protein of unknown function (DUF1320) VM_11120 PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 VM_11140 PF06890 Bacteriophage Mu Gp45 protein VM_11150 PF04865 Baseplate J-like protein VM_11155 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) VM_11180 PF18766 SWI2/SNF2 ATPase VM_11180 PF11867 Domain of unknown function (DUF3387) VM_11180 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VM_11185 PF01420 Type I restriction modification DNA specificity domain VM_11190 PF02384 N-6 DNA Methylase VM_11210 PF00037 4Fe-4S binding domain VM_11210 PF11953 Domain of unknown function (DUF3470) VM_11215 PF08032 RNA 2'-O ribose methyltransferase substrate binding VM_11215 PF00588 SpoU rRNA Methylase family VM_11225 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase VM_11230 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase VM_11235 PF04223 Citrate lyase, alpha subunit (CitF) VM_11240 PF03328 HpcH/HpaI aldolase/citrate lyase family VM_11245 PF06857 Malonate decarboxylase delta subunit (MdcD) VM_11250 PF08218 Citrate lyase ligase C-terminal domain VM_11255 PF03390 2-hydroxycarboxylate transporter family VM_11260 PF04277 Oxaloacetate decarboxylase, gamma chain VM_11265 PF00364 Biotin-requiring enzyme VM_11265 PF02436 Conserved carboxylase domain VM_11265 PF00682 HMGL-like VM_11270 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VM_11275 PF17203 Single cache domain 3 VM_11275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_11280 PF12431 Transcriptional regulator VM_11280 PF00072 Response regulator receiver domain VM_11290 PF12792 CSS motif domain associated with EAL VM_11290 PF00563 EAL domain VM_11305 PF03466 LysR substrate binding domain VM_11305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_11310 PF01266 FAD dependent oxidoreductase VM_11315 PF01235 Sodium:alanine symporter family VM_11320 PF00753 Metallo-beta-lactamase superfamily VM_11320 PF14863 Alkyl sulfatase dimerisation VM_11320 PF14864 Alkyl sulfatase C-terminal VM_11325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_11325 PF03466 LysR substrate binding domain VM_11330 PF01184 GPR1/FUN34/yaaH family VM_11335 PF00704 Glycosyl hydrolases family 18 VM_11335 PF06483 Chitinase C VM_11340 PF00117 Glutamine amidotransferase class-I VM_11340 PF00958 GMP synthase C terminal domain VM_11340 PF02540 NAD synthase VM_11345 PF00478 IMP dehydrogenase / GMP reductase domain VM_11345 PF00571 CBS domain VM_11350 PF13742 OB-fold nucleic acid binding domain VM_11350 PF02601 Exonuclease VII, large subunit VM_11365 PF01926 50S ribosome-binding GTPase VM_11365 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VM_11370 PF13360 PQQ-like domain VM_11375 PF09976 Tetratricopeptide repeat-like domain VM_11380 PF03129 Anticodon binding domain VM_11380 PF13393 Histidyl-tRNA synthetase VM_11385 PF04551 GcpE protein VM_11390 PF13464 Domain of unknown function (DUF4115) VM_11395 PF04055 Radical SAM superfamily VM_11400 PF00334 Nucleoside diphosphate kinase VM_11405 PF00883 Cytosol aminopeptidase family, catalytic domain VM_11405 PF12404 Peptidase VM_11410 PF04384 Iron-sulphur cluster assembly VM_11415 PF00111 2Fe-2S iron-sulfur cluster binding domain VM_11420 PF00012 Hsp70 protein VM_11425 PF07743 HSCB C-terminal oligomerisation domain VM_11425 PF00226 DnaJ domain VM_11430 PF01521 Iron-sulphur cluster biosynthesis VM_11435 PF01592 NifU-like N terminal domain VM_11440 PF00266 Aminotransferase class-V VM_11445 PF02082 Transcriptional regulator VM_11450 PF00588 SpoU rRNA Methylase family VM_11455 PF00459 Inositol monophosphatase family VM_11460 PF07549 SecD/SecF GG Motif VM_11460 PF02355 Protein export membrane protein VM_11465 PF07549 SecD/SecF GG Motif VM_11465 PF02355 Protein export membrane protein VM_11465 PF13721 SecD export protein N-terminal TM region VM_11470 PF02699 Preprotein translocase subunit VM_11475 PF01702 Queuine tRNA-ribosyltransferase VM_11485 PF02547 Queuosine biosynthesis protein VM_11490 PF00571 CBS domain VM_11495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_11500 PF00463 Isocitrate lyase family VM_11505 PF01274 Malate synthase VM_11510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_11510 PF03466 LysR substrate binding domain VM_11515 PF10417 C-terminal domain of 1-Cys peroxiredoxin VM_11515 PF00578 AhpC/TSA family VM_11520 PF03932 CutC family VM_11525 PF03976 Polyphosphate kinase 2 (PPK2) VM_11530 PF01895 PhoU domain VM_11535 PF00005 ABC transporter VM_11540 PF00528 Binding-protein-dependent transport system inner membrane component VM_11545 PF00528 Binding-protein-dependent transport system inner membrane component VM_11550 PF02503 Polyphosphate kinase middle domain VM_11550 PF13089 Polyphosphate kinase N-terminal domain VM_11550 PF17941 Polyphosphate kinase C-terminal domain 1 VM_11550 PF13090 Polyphosphate kinase C-terminal domain 2 VM_11555 PF02541 Ppx/GppA phosphatase family VM_11560 PF12849 PBP superfamily domain VM_11565 PF00512 His Kinase A (phospho-acceptor) domain VM_11565 PF11808 Phosphate regulon sensor protein PhoR VM_11565 PF00989 PAS fold VM_11565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_11570 PF00486 Transcriptional regulatory protein, C terminal VM_11570 PF00072 Response regulator receiver domain VM_11575 PF04381 Putative exonuclease, RdgC VM_11585 PF00037 4Fe-4S binding domain VM_11595 PF00881 Nitroreductase family VM_11605 PF01738 Dienelactone hydrolase family VM_11640 PF00004 ATPase family associated with various cellular activities (AAA) VM_11640 PF07724 AAA domain (Cdc48 subfamily) VM_11640 PF17871 AAA lid domain VM_11640 PF02861 Clp amino terminal domain, pathogenicity island component VM_11640 PF10431 C-terminal, D2-small domain, of ClpB protein VM_11650 PF01479 S4 domain VM_11650 PF00849 RNA pseudouridylate synthase VM_11655 PF13525 Outer membrane lipoprotein VM_11660 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VM_11665 PF01817 Chorismate mutase type II VM_11665 PF00800 Prephenate dehydratase VM_11670 PF13416 Bacterial extracellular solute-binding protein VM_11675 PF00990 Diguanylate cyclase, GGDEF domain VM_11675 PF00563 EAL domain VM_11680 PF01931 Protein of unknown function DUF84 VM_11685 PF01371 Trp repressor protein VM_11690 PF14718 Soluble lytic murein transglycosylase L domain VM_11690 PF01464 Transglycosylase SLT domain VM_11695 PF12848 ABC transporter VM_11695 PF00005 ABC transporter VM_11700 PF07238 PilZ domain VM_11705 PF02153 Prephenate dehydrogenase VM_11705 PF01817 Chorismate mutase type II VM_11710 PF00793 DAHP synthetase I family VM_11715 PF06580 Histidine kinase VM_11715 PF07694 5TMR of 5TMR-LYT VM_11720 PF04397 LytTr DNA-binding domain VM_11720 PF00072 Response regulator receiver domain VM_11725 PF00933 Glycosyl hydrolase family 3 N terminal domain VM_11730 PF03702 Anhydro-N-acetylmuramic acid kinase VM_11735 PF13580 SIS domain VM_11750 PF02554 Carbon starvation protein CstA VM_11755 PF02401 LytB protein VM_11760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VM_11765 PF01252 Signal peptidase (SPase) II VM_11770 PF06827 Zinc finger found in FPG and IleRS VM_11770 PF00133 tRNA synthetases class I (I, L, M and V) VM_11770 PF08264 Anticodon-binding domain of tRNA VM_11775 PF01687 Riboflavin kinase VM_11775 PF06574 FAD synthetase VM_11780 PF03023 Lipid II flippase MurJ VM_11785 PF01649 Ribosomal protein S20 VM_11790 PF01022 Bacterial regulatory protein, arsR family VM_11795 PF01609 Transposase DDE domain VM_11795 PF14706 Transposase DNA-binding VM_11795 PF02281 Transposase Tn5 dimerisation domain VM_11800 PF03466 LysR substrate binding domain VM_11800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_11805 PF02690 Na+/Pi-cotransporter VM_11810 PF00303 Thymidylate synthase VM_11815 PF01790 Prolipoprotein diacylglyceryl transferase VM_11820 PF01925 Sulfite exporter TauE/SafE VM_11825 PF02896 PEP-utilising enzyme, TIM barrel domain VM_11825 PF01590 GAF domain VM_11825 PF00391 PEP-utilising enzyme, mobile domain VM_11825 PF05524 PEP-utilising enzyme, N-terminal VM_11830 PF00293 NUDIX domain VM_11835 PF02976 DNA mismatch repair enzyme MutH VM_11840 PF00248 Aldo/keto reductase family VM_11855 PF02954 Bacterial regulatory protein, Fis family VM_11855 PF00072 Response regulator receiver domain VM_11855 PF00158 Sigma-54 interaction domain VM_11860 PF01336 OB-fold nucleic acid binding domain VM_11860 PF00152 tRNA synthetases class II (D, K and N) VM_11865 PF00472 RF-1 domain VM_11865 PF03462 PCRF domain VM_11870 PF05525 Branched-chain amino acid transport protein VM_11880 PF00270 DEAD/DEAH box helicase VM_11880 PF00271 Helicase conserved C-terminal domain VM_11885 PF00009 Elongation factor Tu GTP binding domain VM_11885 PF16658 Class II release factor RF3, C-terminal domain VM_11885 PF03144 Elongation factor Tu domain 2 VM_11890 PF00990 Diguanylate cyclase, GGDEF domain VM_11890 PF00563 EAL domain VM_11890 PF03707 Bacterial signalling protein N terminal repeat VM_11905 PF13508 Acetyltransferase (GNAT) domain VM_11915 PF00990 Diguanylate cyclase, GGDEF domain VM_11915 PF00563 EAL domain VM_11915 PF03707 Bacterial signalling protein N terminal repeat VM_11935 PF01047 MarR family VM_11940 PF02281 Transposase Tn5 dimerisation domain VM_11940 PF01609 Transposase DDE domain VM_11940 PF14706 Transposase DNA-binding VM_11945 PF07719 Tetratricopeptide repeat VM_11945 PF13181 Tetratricopeptide repeat VM_11950 PF00575 S1 RNA binding domain VM_11950 PF03725 3' exoribonuclease family, domain 2 VM_11950 PF01138 3' exoribonuclease family, domain 1 VM_11950 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VM_11950 PF00013 KH domain VM_11955 PF00312 Ribosomal protein S15 VM_11960 PF01509 TruB family pseudouridylate synthase (N terminal domain) VM_11960 PF16198 tRNA pseudouridylate synthase B C-terminal domain VM_11960 PF09157 Pseudouridine synthase II TruB, C-terminal VM_11965 PF02033 Ribosome-binding factor A VM_11970 PF08364 Bacterial translation initiation factor IF-2 associated region VM_11970 PF04760 Translation initiation factor IF-2, N-terminal region VM_11970 PF00009 Elongation factor Tu GTP binding domain VM_11970 PF11987 Translation-initiation factor 2 VM_11975 PF13184 NusA-like KH domain VM_11975 PF00575 S1 RNA binding domain VM_11975 PF08529 NusA N-terminal domain VM_11980 PF02576 RimP N-terminal domain VM_11980 PF17384 RimP C-terminal SH3 domain VM_11995 PF03840 Preprotein translocase SecG subunit VM_12005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VM_12005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VM_12005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VM_12005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VM_12010 PF00809 Pterin binding enzyme VM_12015 PF00004 ATPase family associated with various cellular activities (AAA) VM_12015 PF17862 AAA+ lid domain VM_12015 PF01434 Peptidase family M41 VM_12015 PF06480 FtsH Extracellular VM_12020 PF01728 FtsJ-like methyltransferase VM_12025 PF01985 CRS1 / YhbY (CRM) domain VM_12030 PF01272 Transcription elongation factor, GreA/GreB, C-term VM_12030 PF03449 Transcription elongation factor, N-terminal VM_12035 PF13609 Gram-negative porin VM_12040 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VM_12045 PF01479 S4 domain VM_12045 PF00579 tRNA synthetases class I (W and Y) VM_12050 PF04225 Opacity-associated protein A LysM-like domain VM_12050 PF01551 Peptidase family M23 VM_12055 PF00873 AcrB/AcrD/AcrF family VM_12065 PF01521 Iron-sulphur cluster biosynthesis VM_12075 PF00202 Aminotransferase class-III VM_12085 PF01594 AI-2E family transporter VM_12090 PF05175 Methyltransferase small domain VM_12090 PF08468 Methyltransferase small domain N-terminal VM_12095 PF00512 His Kinase A (phospho-acceptor) domain VM_12095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_12095 PF00672 HAMP domain VM_12095 PF00072 Response regulator receiver domain VM_12095 PF17149 Periplasmic sensor domain found in signal transduction proteins VM_12095 PF01627 Hpt domain VM_12100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_12105 PF00528 Binding-protein-dependent transport system inner membrane component VM_12110 PF12911 N-terminal TM domain of oligopeptide transport permease C VM_12110 PF00528 Binding-protein-dependent transport system inner membrane component VM_12115 PF00005 ABC transporter VM_12115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_12120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_12120 PF00005 ABC transporter VM_12130 PF01869 BadF/BadG/BcrA/BcrD ATPase family VM_12135 PF00728 Glycosyl hydrolase family 20, catalytic domain VM_12135 PF02838 Glycosyl hydrolase family 20, domain 2 VM_12140 PF06165 Glycosyltransferase family 36 VM_12140 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VM_12145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VM_12145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VM_12145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VM_12145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VM_12150 PF00005 ABC transporter VM_12150 PF08402 TOBE domain VM_12155 PF00528 Binding-protein-dependent transport system inner membrane component VM_12160 PF13416 Bacterial extracellular solute-binding protein VM_12165 PF00909 Ammonium Transporter Family VM_12170 PF00543 Nitrogen regulatory protein P-II VM_12175 PF06062 Uncharacterised protein family (UPF0231) VM_12180 PF06434 Aconitate hydratase 2 N-terminus VM_12180 PF11791 Aconitate B N-terminal domain VM_12180 PF00330 Aconitase family (aconitate hydratase) VM_12185 PF01734 Patatin-like phospholipase VM_12190 PF00905 Penicillin binding protein transpeptidase domain VM_12190 PF14814 Bifunctional transglycosylase second domain VM_12190 PF00912 Transglycosylase VM_12195 PF00270 DEAD/DEAH box helicase VM_12195 PF04408 Helicase associated domain (HA2) VM_12195 PF08482 ATP-dependent helicase C-terminal VM_12195 PF00271 Helicase conserved C-terminal domain VM_12200 PF17746 SfsA N-terminal OB domain VM_12200 PF03749 Sugar fermentation stimulation protein RE domain VM_12205 PF01258 Prokaryotic dksA/traR C4-type zinc finger VM_12210 PF00749 tRNA synthetases class I (E and Q), catalytic domain VM_12215 PF01743 Poly A polymerase head domain VM_12215 PF12627 Probable RNA and SrmB- binding site of polymerase A VM_12215 PF12626 Polymerase A arginine-rich C-terminus VM_12220 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VM_12225 PF02548 Ketopantoate hydroxymethyltransferase VM_12230 PF02569 Pantoate-beta-alanine ligase VM_12235 PF01061 ABC-2 type transporter VM_12240 PF00005 ABC transporter VM_12245 PF00916 Sulfate permease family VM_12245 PF01740 STAS domain VM_12250 PF00484 Carbonic anhydrase VM_12255 PF00156 Phosphoribosyl transferase domain VM_12260 PF00440 Bacterial regulatory proteins, tetR family VM_12265 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VM_12270 PF04348 LppC putative lipoprotein VM_12275 PF02021 Uncharacterised protein family UPF0102 VM_12280 PF13580 SIS domain VM_12285 PF04972 BON domain VM_12290 PF04386 Stringent starvation protein B VM_12295 PF00043 Glutathione S-transferase, C-terminal domain VM_12295 PF02798 Glutathione S-transferase, N-terminal domain VM_12300 PF02167 Cytochrome C1 family VM_12305 PF00033 Cytochrome b/b6/petB VM_12305 PF00032 Cytochrome b(C-terminal)/b6/petD VM_12310 PF00355 Rieske [2Fe-2S] domain VM_12310 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VM_12315 PF00380 Ribosomal protein S9/S16 VM_12320 PF00572 Ribosomal protein L13 VM_12330 PF03969 AFG1-like ATPase VM_12340 PF00595 PDZ domain VM_12345 PF13180 PDZ domain VM_12350 PF01245 Ribosomal protein L19 VM_12355 PF01746 tRNA (Guanine-1)-methyltransferase VM_12360 PF05239 PRC-barrel domain VM_12360 PF01782 RimM N-terminal domain VM_12365 PF00886 Ribosomal protein S16 VM_12370 PF02881 SRP54-type protein, helical bundle domain VM_12370 PF02978 Signal peptide binding domain VM_12370 PF00448 SRP54-type protein, GTPase domain VM_12375 PF01578 Cytochrome C assembly protein VM_12380 PF01595 Cyclin M transmembrane N-terminal domain VM_12380 PF03471 Transporter associated domain VM_12380 PF00571 CBS domain VM_12385 PF02664 S-Ribosylhomocysteinase (LuxS) VM_12390 PF04262 Glutamate-cysteine ligase VM_12395 PF05193 Peptidase M16 inactive domain VM_12395 PF00675 Insulinase (Peptidase family M16) VM_12400 PF09335 SNARE associated Golgi protein VM_12405 PF00107 Zinc-binding dehydrogenase VM_12405 PF08240 Alcohol dehydrogenase GroES-like domain VM_12410 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VM_12415 PF02436 Conserved carboxylase domain VM_12415 PF00364 Biotin-requiring enzyme VM_12415 PF00682 HMGL-like VM_12420 PF04277 Oxaloacetate decarboxylase, gamma chain VM_12465 PF02599 Global regulator protein family VM_12470 PF01842 ACT domain VM_12470 PF00696 Amino acid kinase family VM_12470 PF13840 ACT domain VM_12475 PF01411 tRNA synthetases class II (A) VM_12475 PF02272 DHHA1 domain VM_12475 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VM_12480 PF02631 RecX family VM_12485 PF00154 recA bacterial DNA recombination protein VM_12490 PF02464 Competence-damaged protein VM_12495 PF00005 ABC transporter VM_12495 PF12857 TOBE-like domain VM_12500 PF00528 Binding-protein-dependent transport system inner membrane component VM_12505 PF00528 Binding-protein-dependent transport system inner membrane component VM_12515 PF00291 Pyridoxal-phosphate dependent enzyme VM_12520 PF00488 MutS domain V VM_12520 PF05190 MutS family domain IV VM_12520 PF05192 MutS domain III VM_12520 PF05188 MutS domain II VM_12520 PF01624 MutS domain I VM_12525 PF00140 Sigma-70 factor, region 1.2 VM_12525 PF04539 Sigma-70 region 3 VM_12525 PF04542 Sigma-70 region 2 VM_12525 PF04545 Sigma-70, region 4 VM_12530 PF01476 LysM domain VM_12530 PF01551 Peptidase family M23 VM_12540 PF01975 Survival protein SurE VM_12545 PF01142 tRNA pseudouridine synthase D (TruD) VM_12550 PF02542 YgbB family VM_12555 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VM_12560 PF04977 Septum formation initiator VM_12565 PF02673 Bacitracin resistance protein BacA VM_12570 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VM_12575 PF02152 Dihydroneopterin aldolase VM_12585 PF02660 Glycerol-3-phosphate acyltransferase VM_12590 PF00561 alpha/beta hydrolase fold VM_12595 PF00814 Glycoprotease family VM_12600 PF01165 Ribosomal protein S21 VM_12605 PF09424 Yqey-like protein VM_12610 PF08275 DNA primase catalytic core, N-terminal domain VM_12610 PF10410 DnaB-helicase binding domain of primase VM_12610 PF01807 CHC2 zinc finger VM_12610 PF08278 DNA primase DnaG DnaB-binding VM_12615 PF04546 Sigma-70, non-essential region VM_12615 PF04539 Sigma-70 region 3 VM_12615 PF03979 Sigma-70 factor, region 1.1 VM_12615 PF00140 Sigma-70 factor, region 1.2 VM_12615 PF04542 Sigma-70 region 2 VM_12615 PF04545 Sigma-70, region 4 VM_12625 PF13356 Arm DNA-binding domain VM_12625 PF00589 Phage integrase family VM_12680 PF06803 Protein of unknown function (DUF1232) VM_12695 PF04002 RadC-like JAB domain VM_12700 PF01548 Transposase VM_12700 PF02371 Transposase IS116/IS110/IS902 family VM_12770 PF07478 D-ala D-ala ligase C-terminus VM_12770 PF01820 D-ala D-ala ligase N-terminus VM_12775 PF00004 ATPase family associated with various cellular activities (AAA) VM_12775 PF07724 AAA domain (Cdc48 subfamily) VM_12775 PF17871 AAA lid domain VM_12775 PF10431 C-terminal, D2-small domain, of ClpB protein VM_12825 PF04717 Type VI secretion system, phage-baseplate injector VM_12840 PF12833 Helix-turn-helix domain VM_12840 PF17853 GGDEF-like domain VM_12860 PF00589 Phage integrase family VM_12860 PF02899 Phage integrase, N-terminal SAM-like domain VM_12915 PF08220 DeoR-like helix-turn-helix domain VM_12915 PF13280 WYL domain VM_12930 PF03480 Bacterial extracellular solute-binding protein, family 7 VM_12935 PF01380 SIS domain VM_12940 PF08220 DeoR-like helix-turn-helix domain VM_12940 PF00455 DeoR C terminal sensor domain VM_12945 PF02887 Pyruvate kinase, alpha/beta domain VM_12945 PF00224 Pyruvate kinase, barrel domain VM_12950 PF04402 Protein of unknown function (DUF541) VM_12955 PF03466 LysR substrate binding domain VM_12955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_12960 PF01810 LysE type translocator VM_12965 PF00924 Mechanosensitive ion channel VM_12965 PF05552 Conserved TM helix VM_12970 PF01116 Fructose-bisphosphate aldolase class-II VM_12975 PF00162 Phosphoglycerate kinase VM_12980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VM_12980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VM_12985 PF07715 TonB-dependent Receptor Plug Domain VM_12985 PF00593 TonB dependent receptor VM_12990 PF03466 LysR substrate binding domain VM_12990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_12995 PF00456 Transketolase, thiamine diphosphate binding domain VM_12995 PF02779 Transketolase, pyrimidine binding domain VM_12995 PF02780 Transketolase, C-terminal domain VM_13005 PF00438 S-adenosylmethionine synthetase, N-terminal domain VM_13005 PF02772 S-adenosylmethionine synthetase, central domain VM_13005 PF02773 S-adenosylmethionine synthetase, C-terminal domain VM_13010 PF10263 SprT-like family VM_13010 PF17283 SprT-like zinc ribbon domain VM_13015 PF04231 Endonuclease I VM_13020 PF04452 RNA methyltransferase VM_13025 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VM_13025 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VM_13030 PF02622 Uncharacterized ACR, COG1678 VM_13035 PF03652 Holliday junction resolvase VM_13040 PF00579 tRNA synthetases class I (W and Y) VM_13040 PF01479 S4 domain VM_13050 PF00437 Type II/IV secretion system protein VM_13055 PF00437 Type II/IV secretion system protein VM_13060 PF01168 Alanine racemase, N-terminal domain VM_13065 PF03807 NADP oxidoreductase coenzyme F420-dependent VM_13065 PF14748 Pyrroline-5-carboxylate reductase dimerisation VM_13070 PF02325 YGGT family VM_13075 PF02594 Uncharacterised ACR, YggU family COG1872 VM_13085 PF01725 Ham1 family VM_13090 PF04055 Radical SAM superfamily VM_13090 PF06969 HemN C-terminal domain VM_13100 PF04960 Glutaminase VM_13105 PF02390 Putative methyltransferase VM_13110 PF10576 Iron-sulfur binding domain of endonuclease III VM_13110 PF14815 NUDIX domain VM_13110 PF00633 Helix-hairpin-helix motif VM_13110 PF00730 HhH-GPD superfamily base excision DNA repair protein VM_13115 PF04362 Bacterial Fe(2+) trafficking VM_13120 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VM_13120 PF01464 Transglycosylase SLT domain VM_13145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_13145 PF00672 HAMP domain VM_13145 PF12729 Four helix bundle sensory module for signal transduction VM_13175 PF05099 Tellurite resistance protein TerB VM_13175 PF00226 DnaJ domain VM_13180 PF04453 LPS transport system D VM_13180 PF03968 OstA-like protein VM_13185 PF09312 SurA N-terminal domain VM_13190 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VM_13195 PF00398 Ribosomal RNA adenine dimethylase VM_13200 PF04379 ApaG domain VM_13205 PF00149 Calcineurin-like phosphoesterase VM_13210 PF00186 Dihydrofolate reductase VM_13215 PF12821 Threonine/Serine exporter, ThrE VM_13220 PF06738 Putative threonine/serine exporter VM_13225 PF01018 GTP1/OBG VM_13225 PF01926 50S ribosome-binding GTPase VM_13230 PF01016 Ribosomal L27 protein VM_13235 PF00829 Ribosomal prokaryotic L21 protein VM_13240 PF00348 Polyprenyl synthetase VM_13245 PF13520 Amino acid permease VM_13250 PF00056 lactate/malate dehydrogenase, NAD binding domain VM_13250 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VM_13255 PF02863 Arginine repressor, C-terminal domain VM_13255 PF01316 Arginine repressor, DNA binding domain VM_13260 PF16868 NMT1-like family VM_13270 PF00582 Universal stress protein family VM_13290 PF02838 Glycosyl hydrolase family 20, domain 2 VM_13290 PF00728 Glycosyl hydrolase family 20, catalytic domain VM_13295 PF00474 Sodium:solute symporter family VM_13305 PF07969 Amidohydrolase family VM_13315 PF01418 Helix-turn-helix domain, rpiR family VM_13315 PF02685 Glucokinase VM_13315 PF01380 SIS domain VM_13330 PF13657 HipA N-terminal domain VM_13330 PF07804 HipA-like C-terminal domain VM_13400 PF06877 Regulator of ribonuclease activity B VM_13410 PF00175 Oxidoreductase NAD-binding domain VM_13410 PF00111 2Fe-2S iron-sulfur cluster binding domain VM_13410 PF00970 Oxidoreductase FAD-binding domain VM_13415 PF03063 Prismane/CO dehydrogenase family VM_13420 PF01523 Putative modulator of DNA gyrase VM_13425 PF00795 Carbon-nitrogen hydrolase VM_13430 PF13502 AsmA-like C-terminal region VM_13430 PF13116 Protein of unknown function VM_13435 PF10150 Ribonuclease E/G family VM_13435 PF00575 S1 RNA binding domain VM_13440 PF02545 Maf-like protein VM_13445 PF04093 rod shape-determining protein MreD VM_13450 PF04085 rod shape-determining protein MreC VM_13490 PF00114 Pilin (bacterial filament) VM_13490 PF07963 Prokaryotic N-terminal methylation motif VM_13500 PF00482 Type II secretion system (T2SS), protein F VM_13505 PF00437 Type II/IV secretion system protein VM_13515 PF01471 Putative peptidoglycan binding domain VM_13515 PF13401 AAA domain VM_13520 PF03958 Bacterial type II/III secretion system short domain VM_13520 PF11741 AMIN domain VM_13520 PF00263 Bacterial type II and III secretion system protein VM_13520 PF07660 Secretin and TonB N terminus short domain VM_13540 PF17157 Gammaproteobacterial periplasmic sensor domain VM_13540 PF00563 EAL domain VM_13540 PF00990 Diguanylate cyclase, GGDEF domain VM_13545 PF00436 Single-strand binding protein family VM_13550 PF00196 Bacterial regulatory proteins, luxR family VM_13555 PF00483 Nucleotidyl transferase VM_13560 PF17760 UvrA interaction domain VM_13560 PF00005 ABC transporter VM_13560 PF17755 UvrA DNA-binding domain VM_13570 PF00266 Aminotransferase class-V VM_13575 PF01842 ACT domain VM_13575 PF00696 Amino acid kinase family VM_13580 PF00809 Pterin binding enzyme VM_13580 PF02965 Vitamin B12 dependent methionine synthase, activation domain VM_13580 PF02607 B12 binding domain VM_13580 PF02310 B12 binding domain VM_13580 PF02574 Homocysteine S-methyltransferase VM_13585 PF00999 Sodium/hydrogen exchanger family VM_13655 PF01507 Phosphoadenosine phosphosulfate reductase family VM_13660 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VM_13660 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VM_13665 PF00175 Oxidoreductase NAD-binding domain VM_13665 PF00667 FAD binding domain VM_13665 PF00258 Flavodoxin VM_13685 PF09583 Phage shock protein G (Phageshock_PspG) VM_13690 PF01207 Dihydrouridine synthase (Dus) VM_13695 PF01475 Ferric uptake regulator family VM_13705 PF00342 Phosphoglucose isomerase VM_13710 PF01894 Uncharacterised protein family UPF0047 VM_13715 PF01168 Alanine racemase, N-terminal domain VM_13715 PF00842 Alanine racemase, C-terminal domain VM_13720 PF00772 DnaB-like helicase N terminal domain VM_13720 PF03796 DnaB-like helicase C terminal domain VM_13730 PF03948 Ribosomal protein L9, C-terminal domain VM_13730 PF01281 Ribosomal protein L9, N-terminal domain VM_13735 PF01084 Ribosomal protein S18 VM_13740 PF00436 Single-strand binding protein family VM_13745 PF01250 Ribosomal protein S6 VM_13750 PF00210 Ferritin-like domain VM_13755 PF04324 BFD-like [2Fe-2S] binding domain VM_13760 PF03144 Elongation factor Tu domain 2 VM_13760 PF03143 Elongation factor Tu C-terminal domain VM_13760 PF00009 Elongation factor Tu GTP binding domain VM_13765 PF14492 Elongation Factor G, domain II VM_13765 PF03764 Elongation factor G, domain IV VM_13765 PF00009 Elongation factor Tu GTP binding domain VM_13765 PF03144 Elongation factor Tu domain 2 VM_13765 PF00679 Elongation factor G C-terminus VM_13770 PF00177 Ribosomal protein S7p/S5e VM_13775 PF00164 Ribosomal protein S12/S23 VM_13785 PF02635 DsrE/DsrF-like family VM_13790 PF02635 DsrE/DsrF-like family VM_13795 PF13309 HTH domain VM_13795 PF08348 YheO-like PAS domain VM_13800 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VM_13800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VM_13810 PF04102 SlyX VM_13815 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VM_13820 PF01145 SPFH domain / Band 7 family VM_13825 PF01145 SPFH domain / Band 7 family VM_13825 PF12221 Bacterial membrane protein N terminal VM_13830 PF16360 GTP-binding GTPase Middle Region VM_13830 PF13167 GTP-binding GTPase N-terminal VM_13830 PF01926 50S ribosome-binding GTPase VM_13835 PF17209 Hfq protein VM_13845 PF01119 DNA mismatch repair protein, C-terminal domain VM_13845 PF08676 MutL C terminal dimerisation domain VM_13850 PF01520 N-acetylmuramoyl-L-alanine amidase VM_13855 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VM_13860 PF08331 Domain of unknown function (DUF1730) VM_13910 PF00929 Exonuclease VM_13915 PF03193 RsgA GTPase VM_13920 PF02666 Phosphatidylserine decarboxylase VM_13925 PF00939 Sodium:sulfate symporter transmembrane region VM_13935 PF01676 Metalloenzyme superfamily VM_13935 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VM_13940 PF01551 Peptidase family M23 VM_13950 PF00440 Bacterial regulatory proteins, tetR family VM_13950 PF08360 QacR-like protein, C-terminal region VM_13955 PF01208 Uroporphyrinogen decarboxylase (URO-D) VM_13960 PF09297 NADH pyrophosphatase zinc ribbon domain VM_13960 PF00293 NUDIX domain VM_13965 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VM_13970 PF04998 RNA polymerase Rpb1, domain 5 VM_13970 PF05000 RNA polymerase Rpb1, domain 4 VM_13970 PF04997 RNA polymerase Rpb1, domain 1 VM_13970 PF04983 RNA polymerase Rpb1, domain 3 VM_13970 PF00623 RNA polymerase Rpb1, domain 2 VM_13975 PF04563 RNA polymerase beta subunit VM_13975 PF04561 RNA polymerase Rpb2, domain 2 VM_13975 PF04565 RNA polymerase Rpb2, domain 3 VM_13975 PF10385 RNA polymerase beta subunit external 1 domain VM_13975 PF00562 RNA polymerase Rpb2, domain 6 VM_13975 PF04560 RNA polymerase Rpb2, domain 7 VM_13980 PF16320 Ribosomal protein L7/L12 dimerisation domain VM_13980 PF00542 Ribosomal protein L7/L12 C-terminal domain VM_13985 PF00466 Ribosomal protein L10 VM_13990 PF00687 Ribosomal protein L1p/L10e family VM_13995 PF03946 Ribosomal protein L11, N-terminal domain VM_13995 PF00298 Ribosomal protein L11, RNA binding domain VM_14000 PF02357 Transcription termination factor nusG VM_14000 PF00467 KOW motif VM_14005 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VM_14010 PF03143 Elongation factor Tu C-terminal domain VM_14010 PF03144 Elongation factor Tu domain 2 VM_14010 PF00009 Elongation factor Tu GTP binding domain VM_14035 PF00485 Phosphoribulokinase / Uridine kinase family VM_14040 PF08279 HTH domain VM_14040 PF02237 Biotin protein ligase C terminal domain VM_14040 PF03099 Biotin/lipoate A/B protein ligase family VM_14045 PF01565 FAD binding domain VM_14045 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VM_14060 PF13091 PLD-like domain VM_14090 PF00175 Oxidoreductase NAD-binding domain VM_14095 PF00111 2Fe-2S iron-sulfur cluster binding domain VM_14095 PF00175 Oxidoreductase NAD-binding domain VM_14095 PF00970 Oxidoreductase FAD-binding domain VM_14100 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VM_14110 PF07497 Rho termination factor, RNA-binding domain VM_14110 PF07498 Rho termination factor, N-terminal domain VM_14110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VM_14115 PF00085 Thioredoxin VM_14120 PF00271 Helicase conserved C-terminal domain VM_14120 PF00270 DEAD/DEAH box helicase VM_14125 PF02541 Ppx/GppA phosphatase family VM_14130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_14130 PF00512 His Kinase A (phospho-acceptor) domain VM_14130 PF00072 Response regulator receiver domain VM_14130 PF09456 RcsC Alpha-Beta-Loop (ABL) VM_14135 PF12832 MFS_1 like family VM_14155 PF00501 AMP-binding enzyme VM_14155 PF16177 Acetyl-coenzyme A synthetase N-terminus VM_14155 PF13193 AMP-binding enzyme C-terminal domain VM_14160 PF01220 Dehydroquinase class II VM_14165 PF00364 Biotin-requiring enzyme VM_14170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VM_14170 PF02785 Biotin carboxylase C-terminal domain VM_14170 PF00289 Biotin carboxylase, N-terminal domain VM_14180 PF01207 Dihydrouridine synthase (Dus) VM_14185 PF02954 Bacterial regulatory protein, Fis family VM_14190 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VM_14190 PF00356 Bacterial regulatory proteins, lacI family VM_14195 PF00920 Dehydratase family VM_14200 PF01202 Shikimate kinase VM_14205 PF02447 GntP family permease VM_14210 PF01081 KDPG and KHG aldolase VM_14215 PF07715 TonB-dependent Receptor Plug Domain VM_14215 PF00593 TonB dependent receptor VM_14225 PF17200 Single Cache domain 2 VM_14225 PF00672 HAMP domain VM_14225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_14230 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VM_14230 PF01276 Orn/Lys/Arg decarboxylase, major domain VM_14230 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VM_14235 PF13520 Amino acid permease VM_14240 PF00486 Transcriptional regulatory protein, C terminal VM_14240 PF18500 CadC C-terminal domain 1 VM_14245 PF13411 MerR HTH family regulatory protein VM_14250 PF01808 AICARFT/IMPCHase bienzyme VM_14250 PF02142 MGS-like domain VM_14255 PF02843 Phosphoribosylglycinamide synthetase, C domain VM_14255 PF02844 Phosphoribosylglycinamide synthetase, N domain VM_14255 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VM_14265 PF00216 Bacterial DNA-binding protein VM_14270 PF01595 Cyclin M transmembrane N-terminal domain VM_14270 PF00571 CBS domain VM_14275 PF04222 Protein of unknown function (DUF416) VM_14280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VM_14285 PF03167 Uracil DNA glycosylase superfamily VM_14290 PF00924 Mechanosensitive ion channel VM_14295 PF10996 Beta-Casp domain VM_14295 PF00753 Metallo-beta-lactamase superfamily VM_14295 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VM_14300 PF02719 Polysaccharide biosynthesis protein VM_14305 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VM_14315 PF02397 Bacterial sugar transferase VM_14325 PF00156 Phosphoribosyl transferase domain VM_14350 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VM_14355 PF00132 Bacterial transferase hexapeptide (six repeats) VM_14360 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VM_14360 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VM_14360 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VM_14365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VM_14375 PF01370 NAD dependent epimerase/dehydratase family VM_14380 PF01522 Polysaccharide deacetylase VM_14380 PF00457 Glycosyl hydrolases family 11 VM_14395 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VM_14405 PF04488 Glycosyltransferase sugar-binding region containing DXD motif VM_14410 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VM_14440 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VM_14445 PF00535 Glycosyl transferase family 2 VM_14450 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VM_14455 PF01467 Cytidylyltransferase-like VM_14460 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VM_14460 PF06827 Zinc finger found in FPG and IleRS VM_14460 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VM_14470 PF00471 Ribosomal protein L33 VM_14475 PF00830 Ribosomal L28 family VM_14480 PF04002 RadC-like JAB domain VM_14485 PF00672 HAMP domain VM_14485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_14485 PF17200 Single Cache domain 2 VM_14490 PF04127 DNA / pantothenate metabolism flavoprotein VM_14490 PF02441 Flavoprotein VM_14495 PF00440 Bacterial regulatory proteins, tetR family VM_14500 PF03279 Bacterial lipid A biosynthesis acyltransferase VM_14505 PF03279 Bacterial lipid A biosynthesis acyltransferase VM_14510 PF00156 Phosphoribosyl transferase domain VM_14515 PF03725 3' exoribonuclease family, domain 2 VM_14515 PF01138 3' exoribonuclease family, domain 1 VM_14520 PF08340 Domain of unknown function (DUF1732) VM_14520 PF03755 YicC-like family, N-terminal region VM_14525 PF03350 Uncharacterized protein family, UPF0114 VM_14530 PF00367 phosphotransferase system, EIIB VM_14530 PF02378 Phosphotransferase system, EIIC VM_14535 PF13580 SIS domain VM_14545 PF01418 Helix-turn-helix domain, rpiR family VM_14545 PF01380 SIS domain VM_14550 PF01032 FecCD transport family VM_14555 PF01497 Periplasmic binding protein VM_14560 PF00005 ABC transporter VM_14565 PF00593 TonB dependent receptor VM_14565 PF07715 TonB-dependent Receptor Plug Domain VM_14580 PF09382 RQC domain VM_14580 PF00570 HRDC domain VM_14580 PF16124 RecQ zinc-binding VM_14580 PF00271 Helicase conserved C-terminal domain VM_14580 PF00270 DEAD/DEAH box helicase VM_14585 PF00892 EamA-like transporter family VM_14600 PF01810 LysE type translocator VM_14610 PF13361 UvrD-like helicase C-terminal domain VM_14610 PF00580 UvrD/REP helicase N-terminal domain VM_14615 PF01432 Peptidase family M3 VM_14620 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VM_14625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VM_14625 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_14635 PF12911 N-terminal TM domain of oligopeptide transport permease C VM_14635 PF00528 Binding-protein-dependent transport system inner membrane component VM_14645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_14650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_14650 PF00005 ABC transporter VM_14685 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VM_14690 PF00580 UvrD/REP helicase N-terminal domain VM_14690 PF13361 UvrD-like helicase C-terminal domain VM_14695 PF00440 Bacterial regulatory proteins, tetR family VM_14700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VM_14705 PF00873 AcrB/AcrD/AcrF family VM_14710 PF04380 Membrane fusogenic activity VM_14715 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VM_14715 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VM_14720 PF03466 LysR substrate binding domain VM_14720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_14790 PF12724 Flavodoxin domain VM_14795 PF02386 Cation transport protein VM_14800 PF09186 Domain of unknown function (DUF1949) VM_14800 PF01205 Uncharacterized protein family UPF0029 VM_14805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VM_14805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VM_14805 PF00378 Enoyl-CoA hydratase/isomerase VM_14810 PF02803 Thiolase, C-terminal domain VM_14810 PF00108 Thiolase, N-terminal domain VM_14815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_14815 PF03466 LysR substrate binding domain VM_14820 PF07690 Major Facilitator Superfamily VM_14825 PF12804 MobA-like NTP transferase domain VM_14825 PF00132 Bacterial transferase hexapeptide (six repeats) VM_14830 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VM_14830 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VM_14835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VM_14835 PF02874 ATP synthase alpha/beta family, beta-barrel domain VM_14840 PF00231 ATP synthase VM_14845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VM_14845 PF00306 ATP synthase alpha/beta chain, C terminal domain VM_14845 PF02874 ATP synthase alpha/beta family, beta-barrel domain VM_14850 PF00213 ATP synthase delta (OSCP) subunit VM_14855 PF00430 ATP synthase B/B' CF(0) VM_14860 PF00137 ATP synthase subunit C VM_14865 PF00119 ATP synthase A chain VM_14870 PF03899 ATP synthase I chain VM_14875 PF17762 HTH domain found in ParB protein VM_14875 PF02195 ParB-like nuclease domain VM_14880 PF13614 AAA domain VM_14885 PF02527 rRNA small subunit methyltransferase G VM_14890 PF13932 GidA associated domain VM_14890 PF01134 Glucose inhibited division protein A VM_14895 PF00258 Flavodoxin VM_14900 PF03466 LysR substrate binding domain VM_14900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_14915 PF00171 Aldehyde dehydrogenase family VM_14925 PF00239 Resolvase, N terminal domain VM_14925 PF02796 Helix-turn-helix domain of resolvase VM_14945 PF00580 UvrD/REP helicase N-terminal domain VM_14945 PF13361 UvrD-like helicase C-terminal domain VM_14995 PF06122 Conjugative relaxosome accessory transposon protein VM_15040 PF02899 Phage integrase, N-terminal SAM-like domain VM_15040 PF00589 Phage integrase family VM_15045 PF12631 MnmE helical domain VM_15045 PF01926 50S ribosome-binding GTPase VM_15045 PF10396 GTP-binding protein TrmE N-terminus VM_15050 PF14849 YidC periplasmic domain VM_15050 PF02096 60Kd inner membrane protein VM_15055 PF01809 Putative membrane protein insertion efficiency factor VM_15060 PF00825 Ribonuclease P VM_15065 PF00468 Ribosomal protein L34 VM_15070 PF00005 ABC transporter VM_15075 PF00528 Binding-protein-dependent transport system inner membrane component VM_15080 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_15195 PF00583 Acetyltransferase (GNAT) family VM_15255 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VM_15260 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VM_15355 PF08212 Lipocalin-like domain VM_15365 PF01699 Sodium/calcium exchanger protein VM_15380 PF07859 alpha/beta hydrolase fold VM_15425 PF04229 GrpB protein VM_15430 PF13302 Acetyltransferase (GNAT) domain VM_15440 PF02567 Phenazine biosynthesis-like protein VM_15505 PF00892 EamA-like transporter family VM_15515 PF00376 MerR family regulatory protein VM_15515 PF09278 MerR, DNA binding VM_15520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_15520 PF03466 LysR substrate binding domain VM_15525 PF07690 Major Facilitator Superfamily VM_15540 PF02627 Carboxymuconolactone decarboxylase family VM_15545 PF12833 Helix-turn-helix domain VM_15560 PF07969 Amidohydrolase family VM_15590 PF02311 AraC-like ligand binding domain VM_15590 PF12833 Helix-turn-helix domain VM_15600 PF13597 Anaerobic ribonucleoside-triphosphate reductase VM_15600 PF03477 ATP cone domain VM_15610 PF00155 Aminotransferase class I and II VM_15615 PF08443 RimK-like ATP-grasp domain VM_15615 PF18030 RimK PreATP-grasp domain VM_15620 PF00563 EAL domain VM_15620 PF12792 CSS motif domain associated with EAL VM_15625 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_15625 PF02378 Phosphotransferase system, EIIC VM_15630 PF00294 pfkB family carbohydrate kinase VM_15635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_15635 PF00381 PTS HPr component phosphorylation site VM_15640 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VM_15640 PF00356 Bacterial regulatory proteins, lacI family VM_15645 PF12320 Type 5 capsule protein repressor C-terminal domain VM_15645 PF00149 Calcineurin-like phosphoesterase VM_15650 PF13476 AAA domain VM_15655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_15655 PF00072 Response regulator receiver domain VM_15660 PF00155 Aminotransferase class I and II VM_15670 PF00654 Voltage gated chloride channel VM_15675 PF07683 Cobalamin synthesis protein cobW C-terminal domain VM_15675 PF02492 CobW/HypB/UreG, nucleotide-binding domain VM_15680 PF01926 50S ribosome-binding GTPase VM_15685 PF13088 BNR repeat-like domain VM_15685 PF09264 Vibrio cholerae sialidase, lectin insertion VM_15690 PF01979 Amidohydrolase family VM_15695 PF00480 ROK family VM_15700 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VM_15710 PF03480 Bacterial extracellular solute-binding protein, family 7 VM_15715 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VM_15720 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VM_15725 PF00701 Dihydrodipicolinate synthetase family VM_15730 PF01418 Helix-turn-helix domain, rpiR family VM_15730 PF01380 SIS domain VM_15735 PF01344 Kelch motif VM_15740 PF07646 Kelch motif VM_15755 PF00672 HAMP domain VM_15755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_15755 PF02743 Cache domain VM_15760 PF02743 Cache domain VM_15760 PF00672 HAMP domain VM_15760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_15765 PF00990 Diguanylate cyclase, GGDEF domain VM_15765 PF00563 EAL domain VM_15765 PF03707 Bacterial signalling protein N terminal repeat VM_15775 PF01292 Prokaryotic cytochrome b561 VM_15780 PF04264 YceI-like domain VM_15785 PF01226 Formate/nitrite transporter VM_15790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_15790 PF03466 LysR substrate binding domain VM_15795 PF06496 Protein of unknown function (DUF1097) VM_15800 PF11398 Protein of unknown function (DUF2813) VM_15805 PF00149 Calcineurin-like phosphoesterase VM_15805 PF02872 5'-nucleotidase, C-terminal domain VM_15810 PF03741 Integral membrane protein TerC family VM_15820 PF08274 PhnA Zinc-Ribbon VM_15820 PF03831 PhnA domain VM_15855 PF17158 Membrane-associated sensor, integral membrane domain VM_15855 PF00990 Diguanylate cyclase, GGDEF domain VM_15865 PF00440 Bacterial regulatory proteins, tetR family VM_15885 PF00990 Diguanylate cyclase, GGDEF domain VM_15885 PF00072 Response regulator receiver domain VM_15900 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VM_15900 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VM_15900 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VM_15905 PF02233 NAD(P) transhydrogenase beta subunit VM_15915 PF00486 Transcriptional regulatory protein, C terminal VM_15915 PF00072 Response regulator receiver domain VM_15930 PF03701 Uncharacterised protein family (UPF0181) VM_15950 PF12961 Domain of unknown function (DUF3850) VM_16060 PF07715 TonB-dependent Receptor Plug Domain VM_16060 PF00593 TonB dependent receptor VM_16065 PF07690 Major Facilitator Superfamily VM_16070 PF00668 Condensation domain VM_16070 PF08242 Methyltransferase domain VM_16070 PF00550 Phosphopantetheine attachment site VM_16070 PF00501 AMP-binding enzyme VM_16075 PF13193 AMP-binding enzyme C-terminal domain VM_16075 PF00550 Phosphopantetheine attachment site VM_16075 PF00501 AMP-binding enzyme VM_16075 PF00668 Condensation domain VM_16085 PF00975 Thioesterase domain VM_16090 PF00425 chorismate binding enzyme VM_16095 PF00501 AMP-binding enzyme VM_16095 PF13193 AMP-binding enzyme C-terminal domain VM_16100 PF00005 ABC transporter VM_16100 PF00664 ABC transporter transmembrane region VM_16105 PF00664 ABC transporter transmembrane region VM_16105 PF00005 ABC transporter VM_16110 PF17837 4'-phosphopantetheinyl transferase N-terminal domain VM_16110 PF01648 4'-phosphopantetheinyl transferase superfamily VM_16115 PF01253 Translation initiation factor SUI1 VM_16125 PF01820 D-ala D-ala ligase N-terminus VM_16125 PF07478 D-ala D-ala ligase C-terminus VM_16135 PF00583 Acetyltransferase (GNAT) family VM_16135 PF13607 Succinyl-CoA ligase like flavodoxin domain VM_16135 PF13380 CoA binding domain VM_16140 PF03466 LysR substrate binding domain VM_16140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_16145 PF07715 TonB-dependent Receptor Plug Domain VM_16145 PF00593 TonB dependent receptor VM_16150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_16150 PF12793 Sugar transport-related sRNA regulator N-term VM_16160 PF03061 Thioesterase superfamily VM_16180 PF00043 Glutathione S-transferase, C-terminal domain VM_16180 PF02798 Glutathione S-transferase, N-terminal domain VM_16205 PF00005 ABC transporter VM_16205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_16210 PF00528 Binding-protein-dependent transport system inner membrane component VM_16210 PF12911 N-terminal TM domain of oligopeptide transport permease C VM_16215 PF00528 Binding-protein-dependent transport system inner membrane component VM_16220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_16245 PF00854 POT family VM_16255 PF00392 Bacterial regulatory proteins, gntR family VM_16255 PF07702 UTRA domain VM_16260 PF00528 Binding-protein-dependent transport system inner membrane component VM_16265 PF00005 ABC transporter VM_16275 PF00266 Aminotransferase class-V VM_16285 PF13419 Haloacid dehalogenase-like hydrolase VM_16290 PF14760 Rnk N-terminus VM_16290 PF01272 Transcription elongation factor, GreA/GreB, C-term VM_16295 PF13419 Haloacid dehalogenase-like hydrolase VM_16300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_16300 PF03466 LysR substrate binding domain VM_16315 PF00465 Iron-containing alcohol dehydrogenase VM_16320 PF01741 Large-conductance mechanosensitive channel, MscL VM_16325 PF01268 Formate--tetrahydrofolate ligase VM_16330 PF01641 SelR domain VM_16330 PF01625 Peptide methionine sulfoxide reductase VM_16335 PF01227 GTP cyclohydrolase I VM_16340 PF03454 MoeA C-terminal region (domain IV) VM_16340 PF03453 MoeA N-terminal region (domain I and II) VM_16340 PF00994 Probable molybdopterin binding domain VM_16345 PF00899 ThiF family VM_16355 PF00581 Rhodanese-like domain VM_16360 PF08329 Chitinase A, N-terminal domain VM_16360 PF00704 Glycosyl hydrolases family 18 VM_16365 PF04198 Putative sugar-binding domain VM_16370 PF00923 Transaldolase/Fructose-6-phosphate aldolase VM_16375 PF02780 Transketolase, C-terminal domain VM_16375 PF02779 Transketolase, pyrimidine binding domain VM_16375 PF00456 Transketolase, thiamine diphosphate binding domain VM_16405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VM_16405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VM_16430 PF06942 GlpM protein VM_16440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_16440 PF03466 LysR substrate binding domain VM_16450 PF00881 Nitroreductase family VM_16455 PF00873 AcrB/AcrD/AcrF family VM_16470 PF04143 Sulphur transport VM_16485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VM_16485 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_16490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_16490 PF03466 LysR substrate binding domain VM_16495 PF00529 HlyD membrane-fusion protein of T1SS VM_16495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VM_16550 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VM_16550 PF01266 FAD dependent oxidoreductase VM_16555 PF00672 HAMP domain VM_16555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_16560 PF00691 OmpA family VM_16565 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VM_16565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VM_16570 PF02281 Transposase Tn5 dimerisation domain VM_16570 PF01609 Transposase DDE domain VM_16570 PF14706 Transposase DNA-binding VM_16575 PF13419 Haloacid dehalogenase-like hydrolase VM_16580 PF00672 HAMP domain VM_16580 PF12729 Four helix bundle sensory module for signal transduction VM_16580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_16585 PF03606 C4-dicarboxylate anaerobic carrier VM_16590 PF03313 Serine dehydratase alpha chain VM_16590 PF03315 Serine dehydratase beta chain VM_16595 PF00072 Response regulator receiver domain VM_16595 PF00196 Bacterial regulatory proteins, luxR family VM_16600 PF00672 HAMP domain VM_16600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_16600 PF07730 Histidine kinase VM_16600 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VM_16605 PF12838 4Fe-4S dicluster domain VM_16605 PF13187 4Fe-4S dicluster domain VM_16615 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VM_16615 PF00384 Molybdopterin oxidoreductase VM_16615 PF01568 Molydopterin dinucleotide binding domain VM_16620 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VM_16625 PF03264 NapC/NirT cytochrome c family, N-terminal region VM_16635 PF01966 HD domain VM_16640 PF00196 Bacterial regulatory proteins, luxR family VM_16640 PF00072 Response regulator receiver domain VM_16645 PF07730 Histidine kinase VM_16645 PF05231 MASE1 VM_16645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_16650 PF07690 Major Facilitator Superfamily VM_16660 PF00528 Binding-protein-dependent transport system inner membrane component VM_16665 PF08402 TOBE domain VM_16665 PF00005 ABC transporter VM_16705 PF00437 Type II/IV secretion system protein VM_16720 PF04972 BON domain VM_16720 PF00263 Bacterial type II and III secretion system protein VM_16720 PF13629 Pilus formation protein N terminal region VM_16740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_16740 PF03466 LysR substrate binding domain VM_16750 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VM_16760 PF02803 Thiolase, C-terminal domain VM_16760 PF00108 Thiolase, N-terminal domain VM_16765 PF00106 short chain dehydrogenase VM_16770 PF01797 Transposase IS200 like VM_16775 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VM_16775 PF02838 Glycosyl hydrolase family 20, domain 2 VM_16775 PF03173 Putative carbohydrate binding domain VM_16775 PF00728 Glycosyl hydrolase family 20, catalytic domain VM_16785 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VM_16790 PF02378 Phosphotransferase system, EIIC VM_16795 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_16800 PF02355 Protein export membrane protein VM_16800 PF07549 SecD/SecF GG Motif VM_16805 PF02355 Protein export membrane protein VM_16805 PF13721 SecD export protein N-terminal TM region VM_16805 PF07549 SecD/SecF GG Motif VM_16820 PF17158 Membrane-associated sensor, integral membrane domain VM_16820 PF00990 Diguanylate cyclase, GGDEF domain VM_16825 PF00483 Nucleotidyl transferase VM_16830 PF06483 Chitinase C VM_16830 PF00704 Glycosyl hydrolases family 18 VM_16835 PF00465 Iron-containing alcohol dehydrogenase VM_16845 PF14532 Sigma-54 interaction domain VM_16845 PF00072 Response regulator receiver domain VM_16845 PF02954 Bacterial regulatory protein, Fis family VM_16850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_16850 PF02743 Cache domain VM_16850 PF00512 His Kinase A (phospho-acceptor) domain VM_16865 PF07690 Major Facilitator Superfamily VM_16870 PF00224 Pyruvate kinase, barrel domain VM_16870 PF02887 Pyruvate kinase, alpha/beta domain VM_16875 PF00672 HAMP domain VM_16875 PF00072 Response regulator receiver domain VM_16875 PF01627 Hpt domain VM_16875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_16875 PF00512 His Kinase A (phospho-acceptor) domain VM_16880 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VM_16885 PF02142 MGS-like domain VM_16900 PF01219 Prokaryotic diacylglycerol kinase VM_16915 PF07504 Fungalysin/Thermolysin Propeptide Motif VM_16915 PF02868 Thermolysin metallopeptidase, alpha-helical domain VM_16915 PF03413 Peptidase propeptide and YPEB domain VM_16915 PF01447 Thermolysin metallopeptidase, catalytic domain VM_16920 PF12462 DNA helicase IV / RNA helicase N terminal VM_16920 PF00580 UvrD/REP helicase N-terminal domain VM_16920 PF13361 UvrD-like helicase C-terminal domain VM_16925 PF12805 FUSC-like inner membrane protein yccS VM_16945 PF00005 ABC transporter VM_16945 PF03459 TOBE domain VM_16950 PF00528 Binding-protein-dependent transport system inner membrane component VM_16960 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VM_16960 PF07685 CobB/CobQ-like glutamine amidotransferase domain VM_16980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_16980 PF00512 His Kinase A (phospho-acceptor) domain VM_16980 PF00072 Response regulator receiver domain VM_16980 PF09308 LuxQ, periplasmic VM_16985 PF13407 Periplasmic binding protein domain VM_16995 PF01541 GIY-YIG catalytic domain VM_17000 PF04337 Protein of unknown function, DUF480 VM_17010 PF04363 Protein of unknown function (DUF496) VM_17020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VM_17020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VM_17025 PF00230 Major intrinsic protein VM_17035 PF01266 FAD dependent oxidoreductase VM_17035 PF04324 BFD-like [2Fe-2S] binding domain VM_17040 PF00890 FAD binding domain VM_17045 PF13183 4Fe-4S dicluster domain VM_17045 PF02754 Cysteine-rich domain VM_17055 PF00535 Glycosyl transferase family 2 VM_17065 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VM_17065 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VM_17070 PF00085 Thioredoxin VM_17075 PF07690 Major Facilitator Superfamily VM_17080 PF11756 Nitrous oxide-stimulated promoter VM_17100 PF01568 Molydopterin dinucleotide binding domain VM_17100 PF00384 Molybdopterin oxidoreductase VM_17105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_17105 PF03466 LysR substrate binding domain VM_17110 PF02634 FdhD/NarQ family VM_17115 PF00528 Binding-protein-dependent transport system inner membrane component VM_17120 PF00528 Binding-protein-dependent transport system inner membrane component VM_17125 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_17130 PF00005 ABC transporter VM_17140 PF05762 VWA domain containing CoxE-like protein VM_17145 PF12592 Protein of unknown function (DUF3763) VM_17145 PF17868 AAA lid domain VM_17145 PF07728 AAA domain (dynein-related subfamily) VM_17150 PF00293 NUDIX domain VM_17155 PF01212 Beta-eliminating lyase VM_17160 PF00034 Cytochrome c VM_17170 PF00271 Helicase conserved C-terminal domain VM_17170 PF00270 DEAD/DEAH box helicase VM_17175 PF04336 Acyl carrier protein phosphodiesterase VM_17185 PF03222 Tryptophan/tyrosine permease family VM_17190 PF00672 HAMP domain VM_17190 PF12729 Four helix bundle sensory module for signal transduction VM_17190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_17195 PF16363 GDP-mannose 4,6 dehydratase VM_17200 PF03746 LamB/YcsF family VM_17205 PF02682 Carboxyltransferase domain, subdomain C and D VM_17210 PF02626 Carboxyltransferase domain, subdomain A and B VM_17220 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VM_17220 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VM_17230 PF00005 ABC transporter VM_17235 PF13472 GDSL-like Lipase/Acylhydrolase family VM_17240 PF07055 Enoyl reductase FAD binding domain VM_17240 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VM_17240 PF12241 Trans-2-enoyl-CoA reductase catalytic region VM_17245 PF00498 FHA domain VM_17245 PF00563 EAL domain VM_17245 PF00990 Diguanylate cyclase, GGDEF domain VM_17255 PF01556 DnaJ C terminal domain VM_17255 PF00684 DnaJ central domain VM_17255 PF00226 DnaJ domain VM_17275 PF13419 Haloacid dehalogenase-like hydrolase VM_17290 PF00294 pfkB family carbohydrate kinase VM_17295 PF01797 Transposase IS200 like VM_17300 PF00884 Sulfatase VM_17310 PF00271 Helicase conserved C-terminal domain VM_17310 PF00270 DEAD/DEAH box helicase VM_17310 PF03880 DbpA RNA binding domain VM_17315 PF00575 S1 RNA binding domain VM_17315 PF08206 Ribonuclease B OB domain VM_17315 PF00773 RNB domain VM_17325 PF12849 PBP superfamily domain VM_17335 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VM_17340 PF18416 N-acetylglucosamine binding protein domain 2 VM_17340 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VM_17370 PF00873 AcrB/AcrD/AcrF family VM_17385 PF02653 Branched-chain amino acid transport system / permease component VM_17390 PF00005 ABC transporter VM_17395 PF00465 Iron-containing alcohol dehydrogenase VM_17400 PF00596 Class II Aldolase and Adducin N-terminal domain VM_17405 PF05025 RbsD / FucU transport protein family VM_17410 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VM_17410 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VM_17415 PF07882 L-fucose isomerase, second N-terminal domain VM_17415 PF02952 L-fucose isomerase, C-terminal domain VM_17415 PF07881 L-fucose isomerase, first N-terminal domain VM_17420 PF00455 DeoR C terminal sensor domain VM_17420 PF08220 DeoR-like helix-turn-helix domain VM_17430 PF00455 DeoR C terminal sensor domain VM_17430 PF08220 DeoR-like helix-turn-helix domain VM_17435 PF03611 PTS system sugar-specific permease component VM_17440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_17445 PF00596 Class II Aldolase and Adducin N-terminal domain VM_17455 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VM_17460 PF01261 Xylose isomerase-like TIM barrel VM_17475 PF02656 Domain of unknown function (DUF202) VM_17480 PF01380 SIS domain VM_17480 PF01418 Helix-turn-helix domain, rpiR family VM_17485 PF02378 Phosphotransferase system, EIIC VM_17485 PF00367 phosphotransferase system, EIIB VM_17490 PF13580 SIS domain VM_17515 PF03466 LysR substrate binding domain VM_17515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_17530 PF00871 Acetokinase family VM_17540 PF00593 TonB dependent receptor VM_17540 PF07715 TonB-dependent Receptor Plug Domain VM_17545 PF12833 Helix-turn-helix domain VM_17550 PF00005 ABC transporter VM_17555 PF01032 FecCD transport family VM_17560 PF01032 FecCD transport family VM_17580 PF00801 PKD domain VM_17580 PF05547 Immune inhibitor A peptidase M6 VM_17585 PF12729 Four helix bundle sensory module for signal transduction VM_17585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_17585 PF00672 HAMP domain VM_17590 PF16458 Beta-prism lectin VM_17590 PF07968 Leukocidin/Hemolysin toxin family VM_17590 PF12563 Hemolytic toxin N terminal VM_17595 PF00657 GDSL-like Lipase/Acylhydrolase VM_17600 PF00990 Diguanylate cyclase, GGDEF domain VM_17600 PF08448 PAS fold VM_17610 PF07690 Major Facilitator Superfamily VM_17615 PF03553 Na+/H+ antiporter family VM_17625 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_17625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_17625 PF00512 His Kinase A (phospho-acceptor) domain VM_17630 PF11849 Domain of unknown function (DUF3369) VM_17635 PF12729 Four helix bundle sensory module for signal transduction VM_17635 PF00672 HAMP domain VM_17635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_17640 PF01467 Cytidylyltransferase-like VM_17645 PF02540 NAD synthase VM_17650 PF03605 Anaerobic c4-dicarboxylate membrane transporter VM_17655 PF00270 DEAD/DEAH box helicase VM_17655 PF00271 Helicase conserved C-terminal domain VM_17660 PF01797 Transposase IS200 like VM_17670 PF13580 SIS domain VM_17675 PF13580 SIS domain VM_17685 PF03609 PTS system sorbose-specific iic component VM_17690 PF03830 PTS system sorbose subfamily IIB component VM_17710 PF16338 Domain of unknown function (DUF4968) VM_17710 PF17137 Domain of unknown function (DUF5110) VM_17710 PF01055 Glycosyl hydrolases family 31 VM_17715 PF00884 Sulfatase VM_17730 PF12833 Helix-turn-helix domain VM_17730 PF02311 AraC-like ligand binding domain VM_17740 PF03480 Bacterial extracellular solute-binding protein, family 7 VM_17745 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VM_17750 PF07470 Glycosyl Hydrolase Family 88 VM_17755 PF07702 UTRA domain VM_17755 PF00392 Bacterial regulatory proteins, gntR family VM_17760 PF13580 SIS domain VM_17765 PF03611 PTS system sugar-specific permease component VM_17780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_17790 PF02126 Phosphotriesterase family VM_17800 PF00478 IMP dehydrogenase / GMP reductase domain VM_17810 PF07885 Ion channel VM_17820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VM_17820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VM_17825 PF03853 YjeF-related protein N-terminus VM_17825 PF01256 Carbohydrate kinase VM_17835 PF00072 Response regulator receiver domain VM_17850 PF03889 Alternative ribosome-rescue factor A VM_17855 PF00313 'Cold-shock' DNA-binding domain VM_17860 PF00175 Oxidoreductase NAD-binding domain VM_17860 PF00970 Oxidoreductase FAD-binding domain VM_17860 PF00042 Globin VM_17865 PF01590 GAF domain VM_17865 PF00158 Sigma-54 interaction domain VM_17875 PF01609 Transposase DDE domain VM_17875 PF14706 Transposase DNA-binding VM_17875 PF02281 Transposase Tn5 dimerisation domain VM_17880 PF07687 Peptidase dimerisation domain VM_17880 PF01546 Peptidase family M20/M25/M40 VM_17885 PF01773 Na+ dependent nucleoside transporter N-terminus VM_17885 PF07662 Na+ dependent nucleoside transporter C-terminus VM_17885 PF07670 Nucleoside recognition VM_17900 PF00672 HAMP domain VM_17900 PF02743 Cache domain VM_17900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_17905 PF07726 ATPase family associated with various cellular activities (AAA) VM_17905 PF17863 AAA lid domain VM_17910 PF01882 Protein of unknown function DUF58 VM_17925 PF13519 von Willebrand factor type A domain VM_17940 PF00313 'Cold-shock' DNA-binding domain VM_17945 PF00563 EAL domain VM_17945 PF00990 Diguanylate cyclase, GGDEF domain VM_17945 PF08448 PAS fold VM_17955 PF12843 Putative quorum-sensing-regulated virulence factor VM_17965 PF01212 Beta-eliminating lyase VM_17970 PF03222 Tryptophan/tyrosine permease family VM_17975 PF12848 ABC transporter VM_17975 PF00005 ABC transporter VM_17975 PF16326 ABC transporter C-terminal domain VM_17980 PF00970 Oxidoreductase FAD-binding domain VM_17980 PF00175 Oxidoreductase NAD-binding domain VM_17980 PF00042 Globin VM_17985 PF00356 Bacterial regulatory proteins, lacI family VM_17990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_18000 PF03611 PTS system sugar-specific permease component VM_18005 PF01327 Polypeptide deformylase VM_18010 PF12561 ToxR activated gene A lipoprotein domain VM_18010 PF00041 Fibronectin type III domain VM_18015 PF01266 FAD dependent oxidoreductase VM_18035 PF00158 Sigma-54 interaction domain VM_18035 PF00072 Response regulator receiver domain VM_18035 PF02954 Bacterial regulatory protein, Fis family VM_18040 PF00392 Bacterial regulatory proteins, gntR family VM_18040 PF00155 Aminotransferase class I and II VM_18050 PF02743 Cache domain VM_18050 PF00512 His Kinase A (phospho-acceptor) domain VM_18050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_18065 PF07690 Major Facilitator Superfamily VM_18070 PF03009 Glycerophosphoryl diester phosphodiesterase family VM_18080 PF01048 Phosphorylase superfamily VM_18085 PF04973 Nicotinamide mononucleotide transporter VM_18090 PF00356 Bacterial regulatory proteins, lacI family VM_18095 PF00294 pfkB family carbohydrate kinase VM_18100 PF13407 Periplasmic binding protein domain VM_18105 PF02653 Branched-chain amino acid transport system / permease component VM_18110 PF00005 ABC transporter VM_18115 PF05025 RbsD / FucU transport protein family VM_18140 PF16671 Actin cross-linking domain VM_18140 PF04717 Type VI secretion system, phage-baseplate injector VM_18175 PF00004 ATPase family associated with various cellular activities (AAA) VM_18175 PF07724 AAA domain (Cdc48 subfamily) VM_18175 PF17871 AAA lid domain VM_18175 PF10431 C-terminal, D2-small domain, of ClpB protein VM_18235 PF00849 RNA pseudouridylate synthase VM_18240 PF01740 STAS domain VM_18240 PF00916 Sulfate permease family VM_18245 PF13419 Haloacid dehalogenase-like hydrolase VM_18250 PF00563 EAL domain VM_18250 PF12792 CSS motif domain associated with EAL VM_18255 PF00581 Rhodanese-like domain VM_18260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VM_18260 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VM_18265 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VM_18265 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VM_18275 PF01483 Proprotein convertase P-domain VM_18275 PF07504 Fungalysin/Thermolysin Propeptide Motif VM_18275 PF02868 Thermolysin metallopeptidase, alpha-helical domain VM_18275 PF01447 Thermolysin metallopeptidase, catalytic domain VM_18295 PF02001 Protein of unknown function DUF134 VM_18310 PF00375 Sodium:dicarboxylate symporter family VM_18315 PF07670 Nucleoside recognition VM_18320 PF07670 Nucleoside recognition VM_18325 PF03600 Citrate transporter VM_18330 PF12431 Transcriptional regulator VM_18330 PF00072 Response regulator receiver domain VM_18335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_18335 PF17203 Single cache domain 3 VM_18340 PF00939 Sodium:sulfate symporter transmembrane region VM_18350 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VM_18350 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VM_18355 PF06029 AlkA N-terminal domain VM_18355 PF00730 HhH-GPD superfamily base excision DNA repair protein VM_18360 PF07681 DoxX VM_18365 PF03466 LysR substrate binding domain VM_18365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_18385 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VM_18395 PF07148 Maltose operon periplasmic protein precursor (MalM) VM_18400 PF02264 LamB porin VM_18405 PF00128 Alpha amylase, catalytic domain VM_18405 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VM_18410 PF01566 Natural resistance-associated macrophage protein VM_18420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_18420 PF00672 HAMP domain VM_18430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_18430 PF00672 HAMP domain VM_18445 PF00462 Glutaredoxin VM_18450 PF12852 Cupin VM_18450 PF12833 Helix-turn-helix domain VM_18470 PF01810 LysE type translocator VM_18485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_18485 PF03466 LysR substrate binding domain VM_18490 PF02056 Family 4 glycosyl hydrolase VM_18490 PF11975 Family 4 glycosyl hydrolase C-terminal domain VM_18500 PF00271 Helicase conserved C-terminal domain VM_18500 PF00270 DEAD/DEAH box helicase VM_18505 PF03786 D-mannonate dehydratase (UxuA) VM_18510 PF07729 FCD domain VM_18510 PF00392 Bacterial regulatory proteins, gntR family VM_18515 PF03480 Bacterial extracellular solute-binding protein, family 7 VM_18520 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VM_18525 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VM_18530 PF08125 Mannitol dehydrogenase C-terminal domain VM_18530 PF01232 Mannitol dehydrogenase Rossmann domain VM_18535 PF02614 Glucuronate isomerase VM_18540 PF00294 pfkB family carbohydrate kinase VM_18545 PF01081 KDPG and KHG aldolase VM_18550 PF10688 Bacterial inner membrane protein VM_18555 PF03466 LysR substrate binding domain VM_18555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_18565 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VM_18570 PF13309 HTH domain VM_18570 PF08348 YheO-like PAS domain VM_18575 PF03313 Serine dehydratase alpha chain VM_18580 PF01042 Endoribonuclease L-PSP VM_18595 PF00005 ABC transporter VM_18595 PF00664 ABC transporter transmembrane region VM_18605 PF01810 LysE type translocator VM_18610 PF12833 Helix-turn-helix domain VM_18625 PF01557 Fumarylacetoacetate (FAA) hydrolase family VM_18630 PF01047 MarR family VM_18635 PF02566 OsmC-like protein VM_18640 PF13609 Gram-negative porin VM_18645 PF00892 EamA-like transporter family VM_18650 PF08534 Redoxin VM_18650 PF00462 Glutaredoxin VM_18665 PF01039 Carboxyl transferase domain VM_18665 PF17848 Acetyl-coA carboxylase zinc finger domain VM_18670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_18670 PF03466 LysR substrate binding domain VM_18675 PF02386 Cation transport protein VM_18680 PF02254 TrkA-N domain VM_18680 PF02080 TrkA-C domain VM_18685 PF00486 Transcriptional regulatory protein, C terminal VM_18685 PF00072 Response regulator receiver domain VM_18690 PF02702 Osmosensitive K+ channel His kinase sensor domain VM_18690 PF00512 His Kinase A (phospho-acceptor) domain VM_18690 PF13493 Domain of unknown function (DUF4118) VM_18690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_18700 PF00376 MerR family regulatory protein VM_18700 PF09278 MerR, DNA binding VM_18705 PF07690 Major Facilitator Superfamily VM_18710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_18710 PF03466 LysR substrate binding domain VM_18715 PF03707 Bacterial signalling protein N terminal repeat VM_18715 PF00990 Diguanylate cyclase, GGDEF domain VM_18715 PF00563 EAL domain VM_18720 PF01476 LysM domain VM_18720 PF01551 Peptidase family M23 VM_18720 PF08525 Opacity-associated protein A N-terminal motif VM_18730 PF01740 STAS domain VM_18730 PF00916 Sulfate permease family VM_18745 PF00990 Diguanylate cyclase, GGDEF domain VM_18745 PF03707 Bacterial signalling protein N terminal repeat VM_18745 PF00563 EAL domain VM_18750 PF00005 ABC transporter VM_18755 PF00528 Binding-protein-dependent transport system inner membrane component VM_18760 PF00528 Binding-protein-dependent transport system inner membrane component VM_18765 PF12849 PBP superfamily domain VM_18770 PF00672 HAMP domain VM_18770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_18770 PF12729 Four helix bundle sensory module for signal transduction VM_18775 PF00270 DEAD/DEAH box helicase VM_18775 PF00271 Helicase conserved C-terminal domain VM_18785 PF17969 L,D-transpeptidase C-terminal domain VM_18785 PF03734 L,D-transpeptidase catalytic domain VM_18785 PF01476 LysM domain VM_18790 PF00875 DNA photolyase VM_18790 PF03441 FAD binding domain of DNA photolyase VM_18795 PF13411 MerR HTH family regulatory protein VM_18800 PF08349 Protein of unknown function (DUF1722) VM_18810 PF01048 Phosphorylase superfamily VM_18830 PF11742 Protein of unknown function (DUF3302) VM_18835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VM_18835 PF00529 HlyD membrane-fusion protein of T1SS VM_18850 PF13443 Cro/C1-type HTH DNA-binding domain VM_18860 PF07238 PilZ domain VM_18860 PF12945 Flagellar protein YcgR VM_18865 PF03616 Sodium/glutamate symporter VM_18880 PF02630 SCO1/SenC VM_18890 PF00375 Sodium:dicarboxylate symporter family VM_18895 PF04389 Peptidase family M28 VM_18895 PF02225 PA domain VM_18900 PF01569 PAP2 superfamily VM_18925 PF08329 Chitinase A, N-terminal domain VM_18925 PF00704 Glycosyl hydrolases family 18 VM_18930 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VM_18935 PF00939 Sodium:sulfate symporter transmembrane region VM_18945 PF00842 Alanine racemase, C-terminal domain VM_18945 PF01757 Acyltransferase family VM_18945 PF01168 Alanine racemase, N-terminal domain VM_18970 PF04717 Type VI secretion system, phage-baseplate injector VM_18970 PF16671 Actin cross-linking domain VM_18975 PF05638 Type VI secretion system effector, Hcp VM_18980 PF00128 Alpha amylase, catalytic domain VM_18980 PF02806 Alpha amylase, C-terminal all-beta domain VM_18980 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VM_18985 PF02446 4-alpha-glucanotransferase VM_18990 PF00343 Carbohydrate phosphorylase VM_18995 PF17874 MalT-like TPR region VM_18995 PF00196 Bacterial regulatory proteins, luxR family VM_19000 PF10928 Protein of unknown function (DUF2810) VM_19005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_19005 PF17200 Single Cache domain 2 VM_19005 PF00672 HAMP domain VM_19010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VM_19010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VM_19015 PF01709 Transcriptional regulator VM_19045 PF13614 AAA domain VM_19045 PF18607 ParA helix turn helix domain VM_19050 PF08775 ParB family VM_19050 PF02195 ParB-like nuclease domain VM_19055 PF13416 Bacterial extracellular solute-binding protein VM_19060 PF05127 Helicase VM_19060 PF13718 GNAT acetyltransferase 2 VM_19070 PF00501 AMP-binding enzyme VM_19080 PF00106 short chain dehydrogenase VM_19090 PF00072 Response regulator receiver domain VM_19090 PF00486 Transcriptional regulatory protein, C terminal VM_19095 PF00512 His Kinase A (phospho-acceptor) domain VM_19095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_19095 PF08521 Two-component sensor kinase N-terminal VM_19100 PF08019 Phosphoethanolamine transferase EptA/EptB VM_19100 PF00884 Sulfatase VM_19105 PF00005 ABC transporter VM_19105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_19110 PF00528 Binding-protein-dependent transport system inner membrane component VM_19110 PF12911 N-terminal TM domain of oligopeptide transport permease C VM_19115 PF00528 Binding-protein-dependent transport system inner membrane component VM_19120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_19130 PF00486 Transcriptional regulatory protein, C terminal VM_19130 PF00072 Response regulator receiver domain VM_19135 PF09078 CheY binding VM_19135 PF02895 Signal transducing histidine kinase, homodimeric domain VM_19135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_19135 PF01627 Hpt domain VM_19135 PF01584 CheW-like domain VM_19140 PF01584 CheW-like domain VM_19145 PF01584 CheW-like domain VM_19150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_19150 PF00672 HAMP domain VM_19150 PF02203 Tar ligand binding domain homologue VM_19155 PF03705 CheR methyltransferase, all-alpha domain VM_19155 PF01739 CheR methyltransferase, SAM binding domain VM_19160 PF03975 CheD chemotactic sensory transduction VM_19165 PF01339 CheB methylesterase VM_19165 PF00072 Response regulator receiver domain VM_19170 PF02743 Cache domain VM_19170 PF00672 HAMP domain VM_19170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_19180 PF00990 Diguanylate cyclase, GGDEF domain VM_19180 PF00072 Response regulator receiver domain VM_19190 PF00005 ABC transporter VM_19190 PF00664 ABC transporter transmembrane region VM_19190 PF03412 Peptidase C39 family VM_19205 PF00529 HlyD membrane-fusion protein of T1SS VM_19210 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VM_19210 PF01243 Pyridoxamine 5'-phosphate oxidase VM_19215 PF00072 Response regulator receiver domain VM_19215 PF00196 Bacterial regulatory proteins, luxR family VM_19220 PF03781 Sulfatase-modifying factor enzyme 1 VM_19230 PF12833 Helix-turn-helix domain VM_19235 PF14850 DNA-binding domain of Proline dehydrogenase VM_19235 PF01619 Proline dehydrogenase VM_19235 PF00171 Aldehyde dehydrogenase family VM_19235 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VM_19245 PF00474 Sodium:solute symporter family VM_19255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_19255 PF00672 HAMP domain VM_19255 PF02743 Cache domain VM_19260 PF01037 Lrp/AsnC ligand binding domain VM_19265 PF00171 Aldehyde dehydrogenase family VM_19295 PF00196 Bacterial regulatory proteins, luxR family VM_19295 PF03472 Autoinducer binding domain VM_19300 PF01276 Orn/Lys/Arg decarboxylase, major domain VM_19300 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VM_19300 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VM_19305 PF13520 Amino acid permease VM_19310 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VM_19320 PF04013 Putative SAM-dependent RNA methyltransferase VM_19325 PF00579 tRNA synthetases class I (W and Y) VM_19330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_19330 PF03466 LysR substrate binding domain VM_19335 PF00106 short chain dehydrogenase VM_19345 PF03466 LysR substrate binding domain VM_19345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_19350 PF13460 NAD(P)H-binding VM_19360 PF14765 Polyketide synthase dehydratase VM_19360 PF00698 Acyl transferase domain VM_19360 PF08240 Alcohol dehydrogenase GroES-like domain VM_19360 PF08990 Erythronolide synthase docking VM_19360 PF16197 Ketoacyl-synthetase C-terminal extension VM_19360 PF00109 Beta-ketoacyl synthase, N-terminal domain VM_19360 PF02801 Beta-ketoacyl synthase, C-terminal domain VM_19360 PF08659 KR domain VM_19360 PF00550 Phosphopantetheine attachment site VM_19370 PF03358 NADPH-dependent FMN reductase VM_19375 PF03466 LysR substrate binding domain VM_19375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_19390 PF00892 EamA-like transporter family VM_19420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VM_19425 PF05068 Mannitol repressor VM_19430 PF01232 Mannitol dehydrogenase Rossmann domain VM_19430 PF08125 Mannitol dehydrogenase C-terminal domain VM_19435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_19435 PF02378 Phosphotransferase system, EIIC VM_19435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_19440 PF01551 Peptidase family M23 VM_19440 PF04225 Opacity-associated protein A LysM-like domain VM_19450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VM_19450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VM_19450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VM_19450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VM_19455 PF00528 Binding-protein-dependent transport system inner membrane component VM_19460 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_19465 PF00528 Binding-protein-dependent transport system inner membrane component VM_19470 PF00005 ABC transporter VM_19475 PF00793 DAHP synthetase I family VM_19480 PF01554 MatE VM_19485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_19485 PF08447 PAS fold VM_19490 PF01470 Pyroglutamyl peptidase VM_19495 PF08678 Rsbr N terminal VM_19495 PF01740 STAS domain VM_19505 PF13581 Histidine kinase-like ATPase domain VM_19515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_19515 PF01627 Hpt domain VM_19515 PF00672 HAMP domain VM_19515 PF00512 His Kinase A (phospho-acceptor) domain VM_19515 PF00072 Response regulator receiver domain VM_19515 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VM_19520 PF00072 Response regulator receiver domain VM_19525 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VM_19525 PF00391 PEP-utilising enzyme, mobile domain VM_19525 PF02896 PEP-utilising enzyme, TIM barrel domain VM_19530 PF03618 Kinase/pyrophosphorylase VM_19540 PF01070 FMN-dependent dehydrogenase VM_19545 PF02652 L-lactate permease VM_19550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_19550 PF03466 LysR substrate binding domain VM_19555 PF00005 ABC transporter VM_19555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_19565 PF05362 Lon protease (S16) C-terminal proteolytic domain VM_19565 PF13654 AAA domain VM_19570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_19570 PF00672 HAMP domain VM_19580 PF07690 Major Facilitator Superfamily VM_19590 PF06865 Pyrimidine/purine nucleoside phosphorylase VM_19595 PF02678 Pirin VM_19595 PF05726 Pirin C-terminal cupin domain VM_19605 PF00990 Diguanylate cyclase, GGDEF domain VM_19605 PF00563 EAL domain VM_19610 PF03466 LysR substrate binding domain VM_19610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_19630 PF00990 Diguanylate cyclase, GGDEF domain VM_19630 PF03707 Bacterial signalling protein N terminal repeat VM_19630 PF00563 EAL domain VM_19645 PF00990 Diguanylate cyclase, GGDEF domain VM_19650 PF01047 MarR family VM_19655 PF01584 CheW-like domain VM_19655 PF00072 Response regulator receiver domain VM_19675 PF03466 LysR substrate binding domain VM_19675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_19685 PF00196 Bacterial regulatory proteins, luxR family VM_19690 PF01906 Putative heavy-metal-binding VM_19695 PF07383 Protein of unknown function (DUF1496) VM_19700 PF01476 LysM domain VM_19700 PF01464 Transglycosylase SLT domain VM_19720 PF00460 Flagella basal body rod protein VM_19725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_19725 PF00460 Flagella basal body rod protein VM_19730 PF03963 Flagellar hook capping protein - N-terminal region VM_19730 PF13860 FlgD Ig-like domain VM_19730 PF13861 FlgD Tudor-like domain VM_19735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_19735 PF00460 Flagella basal body rod protein VM_19735 PF07559 Flagellar basal body protein FlaE VM_19740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_19740 PF00460 Flagella basal body rod protein VM_19745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_19745 PF00460 Flagella basal body rod protein VM_19750 PF02107 Flagellar L-ring protein VM_19755 PF02119 Flagellar P-ring protein VM_19760 PF10135 Rod binding protein VM_19760 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VM_19765 PF00460 Flagella basal body rod protein VM_19765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_19785 PF13677 Membrane MotB of proton-channel complex MotA/MotB VM_19785 PF00691 OmpA family VM_19790 PF01618 MotA/TolQ/ExbB proton channel family VM_19795 PF04545 Sigma-70, region 4 VM_19795 PF04542 Sigma-70 region 2 VM_19800 PF03748 Flagellar basal body-associated protein FliL VM_19820 PF02465 Flagellar hook-associated protein 2 N-terminus VM_19820 PF07195 Flagellar hook-associated protein 2 C-terminus VM_19820 PF07196 Flagellin hook IN motif VM_19830 PF00669 Bacterial flagellin N-terminal helical region VM_19830 PF00700 Bacterial flagellin C-terminal helical region VM_19835 PF00771 FHIPEP family VM_19840 PF01312 FlhB HrpN YscU SpaS Family VM_19845 PF01311 Bacterial export proteins, family 1 VM_19850 PF01313 Bacterial export proteins, family 3 VM_19855 PF00813 FliP family VM_19860 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VM_19870 PF00691 OmpA family VM_19875 PF00158 Sigma-54 interaction domain VM_19875 PF00072 Response regulator receiver domain VM_19875 PF02954 Bacterial regulatory protein, Fis family VM_19880 PF02049 Flagellar hook-basal body complex protein FliE VM_19885 PF01514 Secretory protein of YscJ/FliF family VM_19885 PF08345 Flagellar M-ring protein C-terminal VM_19890 PF01706 FliG C-terminal domain VM_19890 PF14841 FliG middle domain VM_19890 PF14842 FliG N-terminal domain VM_19900 PF18269 T3SS EscN ATPase C-terminal domain VM_19900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VM_19915 PF01116 Fructose-bisphosphate aldolase class-II VM_19920 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_19920 PF02378 Phosphotransferase system, EIIC VM_19920 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_19925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_19925 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_19935 PF00455 DeoR C terminal sensor domain VM_19935 PF08220 DeoR-like helix-turn-helix domain VM_19950 PF13302 Acetyltransferase (GNAT) domain VM_19955 PF08402 TOBE domain VM_19955 PF00005 ABC transporter VM_19960 PF01547 Bacterial extracellular solute-binding protein VM_19965 PF14785 Maltose transport system permease protein MalF P2 domain VM_19965 PF00528 Binding-protein-dependent transport system inner membrane component VM_19970 PF00528 Binding-protein-dependent transport system inner membrane component VM_19985 PF00149 Calcineurin-like phosphoesterase VM_19985 PF02872 5'-nucleotidase, C-terminal domain VM_19995 PF00455 DeoR C terminal sensor domain VM_19995 PF08220 DeoR-like helix-turn-helix domain VM_20000 PF17151 Periplasmic sensor domain VM_20000 PF00990 Diguanylate cyclase, GGDEF domain VM_20025 PF00313 'Cold-shock' DNA-binding domain VM_20035 PF00005 ABC transporter VM_20035 PF12848 ABC transporter VM_20040 PF05661 Protein of unknown function (DUF808) VM_20045 PF05958 tRNA (Uracil-5-)-methyltransferase VM_20055 PF05656 Protein of unknown function (DUF805) VM_20065 PF01979 Amidohydrolase family VM_20070 PF03473 MOSC domain VM_20070 PF03476 MOSC N-terminal beta barrel domain VM_20070 PF00111 2Fe-2S iron-sulfur cluster binding domain VM_20070 PF03473 MOSC domain VM_20070 PF00111 2Fe-2S iron-sulfur cluster binding domain VM_20070 PF03476 MOSC N-terminal beta barrel domain VM_20075 PF14706 Transposase DNA-binding VM_20075 PF01609 Transposase DDE domain VM_20075 PF02281 Transposase Tn5 dimerisation domain VM_20080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_20080 PF02743 Cache domain VM_20080 PF00672 HAMP domain VM_20110 PF00005 ABC transporter VM_20115 PF01032 FecCD transport family VM_20120 PF01497 Periplasmic binding protein VM_20125 PF02472 Biopolymer transport protein ExbD/TolR VM_20130 PF01618 MotA/TolQ/ExbB proton channel family VM_20135 PF03544 Gram-negative bacterial TonB protein C-terminal VM_20140 PF04055 Radical SAM superfamily VM_20145 PF06228 Haem utilisation ChuX/HutX VM_20150 PF01243 Pyridoxamine 5'-phosphate oxidase VM_20155 PF00672 HAMP domain VM_20155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_20160 PF03150 Di-haem cytochrome c peroxidase VM_20160 PF00034 Cytochrome c VM_20165 PF13556 PucR C-terminal helix-turn-helix domain VM_20165 PF17853 GGDEF-like domain VM_20165 PF05651 Putative sugar diacid recognition VM_20170 PF02447 GntP family permease VM_20175 PF02595 Glycerate kinase family VM_20195 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VM_20195 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VM_20200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VM_20205 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VM_20205 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VM_20220 PF00672 HAMP domain VM_20220 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VM_20220 PF00072 Response regulator receiver domain VM_20220 PF01627 Hpt domain VM_20220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_20220 PF00512 His Kinase A (phospho-acceptor) domain VM_20225 PF00360 Phytochrome region VM_20225 PF00990 Diguanylate cyclase, GGDEF domain VM_20225 PF01590 GAF domain VM_20225 PF00563 EAL domain VM_20240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VM_20245 PF03466 LysR substrate binding domain VM_20245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_20250 PF01053 Cys/Met metabolism PLP-dependent enzyme VM_20255 PF00155 Aminotransferase class I and II VM_20260 PF08240 Alcohol dehydrogenase GroES-like domain VM_20260 PF00107 Zinc-binding dehydrogenase VM_20270 PF08267 Cobalamin-independent synthase, N-terminal domain VM_20270 PF01717 Cobalamin-independent synthase, Catalytic domain VM_20290 PF01022 Bacterial regulatory protein, arsR family VM_20300 PF00768 D-alanyl-D-alanine carboxypeptidase VM_20310 PF03922 OmpW family VM_20330 PF00128 Alpha amylase, catalytic domain VM_20350 PF12704 MacB-like periplasmic core domain VM_20350 PF02687 FtsX-like permease family VM_20350 PF00005 ABC transporter VM_20365 PF07694 5TMR of 5TMR-LYT VM_20365 PF06580 Histidine kinase VM_20365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_20370 PF04397 LytTr DNA-binding domain VM_20370 PF00072 Response regulator receiver domain VM_20380 PF00990 Diguanylate cyclase, GGDEF domain VM_20385 PF13520 Amino acid permease VM_20400 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VM_20400 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VM_20410 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VM_20420 PF13533 Biotin-lipoyl like VM_20430 PF02566 OsmC-like protein VM_20435 PF00571 CBS domain VM_20435 PF03471 Transporter associated domain VM_20435 PF01595 Cyclin M transmembrane N-terminal domain VM_20440 PF14602 Hexapeptide repeat of succinyl-transferase VM_20440 PF00132 Bacterial transferase hexapeptide (six repeats) VM_20440 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VM_20445 PF00892 EamA-like transporter family VM_20465 PF13193 AMP-binding enzyme C-terminal domain VM_20465 PF00501 AMP-binding enzyme VM_20470 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VM_20475 PF01329 Pterin 4 alpha carbinolamine dehydratase VM_20485 PF01554 MatE VM_20495 PF12833 Helix-turn-helix domain VM_20500 PF00583 Acetyltransferase (GNAT) family VM_20505 PF00202 Aminotransferase class-III VM_20510 PF06339 Ectoine synthase VM_20515 PF13840 ACT domain VM_20515 PF00696 Amino acid kinase family VM_20520 PF00571 CBS domain VM_20520 PF01769 Divalent cation transporter VM_20520 PF03448 MgtE intracellular N domain VM_20545 PF17944 Arginine decarboxylase C-terminal helical extension VM_20545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VM_20545 PF17810 Arginine decarboxylase helical bundle domain VM_20550 PF00491 Arginase family VM_20565 PF04962 KduI/IolB family VM_20570 PF00294 pfkB family carbohydrate kinase VM_20575 PF01081 KDPG and KHG aldolase VM_20580 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VM_20580 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VM_20590 PF07470 Glycosyl Hydrolase Family 88 VM_20595 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain VM_20595 PF17386 Lacto-N-biose phosphorylase C-terminal domain VM_20595 PF17385 Lacto-N-biose phosphorylase central domain VM_20600 PF01797 Transposase IS200 like VM_20610 PF03707 Bacterial signalling protein N terminal repeat VM_20610 PF00563 EAL domain VM_20610 PF00990 Diguanylate cyclase, GGDEF domain VM_20615 PF16385 Domain of unknown function VM_20615 PF00884 Sulfatase VM_20620 PF00884 Sulfatase VM_20625 PF13186 Iron-sulfur cluster-binding domain VM_20625 PF04055 Radical SAM superfamily VM_20635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_20640 PF00528 Binding-protein-dependent transport system inner membrane component VM_20645 PF12911 N-terminal TM domain of oligopeptide transport permease C VM_20645 PF00528 Binding-protein-dependent transport system inner membrane component VM_20650 PF00005 ABC transporter VM_20650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_20655 PF13426 PAS domain VM_20655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_20655 PF08447 PAS fold VM_20660 PF01614 Bacterial transcriptional regulator VM_20660 PF09339 IclR helix-turn-helix domain VM_20665 PF00768 D-alanyl-D-alanine carboxypeptidase VM_20665 PF07943 Penicillin-binding protein 5, C-terminal domain VM_20680 PF00194 Eukaryotic-type carbonic anhydrase VM_20685 PF17996 Carbohydrate esterase 2 N-terminal VM_20685 PF13472 GDSL-like Lipase/Acylhydrolase family VM_20690 PF02347 Glycine cleavage system P-protein VM_20695 PF01597 Glycine cleavage H-protein VM_20700 PF00464 Serine hydroxymethyltransferase VM_20710 PF01571 Aminomethyltransferase folate-binding domain VM_20710 PF08669 Glycine cleavage T-protein C-terminal barrel domain VM_20715 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VM_20715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VM_20715 PF02824 TGS domain VM_20715 PF03129 Anticodon binding domain VM_20720 PF00707 Translation initiation factor IF-3, C-terminal domain VM_20720 PF05198 Translation initiation factor IF-3, N-terminal domain VM_20725 PF01632 Ribosomal protein L35 VM_20730 PF00453 Ribosomal protein L20 VM_20735 PF13495 Phage integrase, N-terminal SAM-like domain VM_20735 PF00589 Phage integrase family