VM_00005 PF00308 Bacterial dnaA protein VM_00005 PF08299 Bacterial dnaA protein helix-turn-helix VM_00005 PF11638 DnaA N-terminal domain VM_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain VM_00010 PF02767 DNA polymerase III beta subunit, central domain VM_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain VM_00015 PF02463 RecF/RecN/SMC N terminal domain VM_00020 PF00204 DNA gyrase B VM_00020 PF00986 DNA gyrase B subunit, carboxyl terminus VM_00020 PF01751 Toprim domain VM_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_00035 PF00011 Hsp20/alpha crystallin family VM_00040 PF00155 Aminotransferase class I and II VM_00045 PF02092 VM_00045 VM_00045 PF05746 DALR anticodon binding domain VM_00050 PF02091 Glycyl-tRNA synthetase alpha subunit VM_00055 PF01169 VM_00055 VM_00065 PF01206 Sulfurtransferase TusA VM_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_00075 PF03466 LysR substrate binding domain VM_00080 PF00107 Zinc-binding dehydrogenase VM_00080 PF08240 Alcohol dehydrogenase GroES-like domain VM_00085 PF00291 Pyridoxal-phosphate dependent enzyme VM_00085 PF00585 C-terminal regulatory domain of Threonine dehydratase VM_00090 PF00920 Dehydratase family VM_00095 PF01063 Aminotransferase class IV VM_00100 PF13710 ACT domain VM_00105 PF00205 Thiamine pyrophosphate enzyme, central domain VM_00105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VM_00105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VM_00110 PF01078 Magnesium chelatase, subunit ChlI VM_00110 PF13335 VM_00110 VM_00110 PF13541 Subunit ChlI of Mg-chelatase VM_00115 PF01553 Acyltransferase VM_00120 PF01323 DSBA-like thioredoxin domain VM_00125 PF01636 Phosphotransferase enzyme family VM_00130 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VM_00130 PF12801 VM_00130 VM_00130 PF13746 4Fe-4S dicluster domain VM_00135 PF06288 Protein of unknown function (DUF1040) VM_00145 PF07070 VM_00145 VM_00150 PF03006 VM_00150 VM_00155 PF11355 VM_00155 VM_00160 PF02386 Cation transport protein VM_00165 PF02080 TrkA-C domain VM_00165 PF02254 TrkA-N domain VM_00170 PF01029 NusB family VM_00170 PF01189 NOL1/NOP2/sun family VM_00175 PF00551 Formyl transferase VM_00175 PF02911 Formyl transferase, C-terminal domain VM_00180 PF01327 Polypeptide deformylase VM_00185 PF01476 LysM domain VM_00190 PF02481 DNA recombination-mediator protein A VM_00195 PF04361 VM_00195 VM_00200 PF01396 VM_00200 VM_00205 PF02222 ATP-grasp domain VM_00210 PF00731 AIR carboxylase VM_00215 PF01300 Telomere recombination VM_00220 PF01218 Coproporphyrinogen III oxidase VM_00225 PF01488 Shikimate / quinate 5-dehydrogenase VM_00225 PF08501 Shikimate dehydrogenase substrate binding domain VM_00230 PF07369 Protein of unknown function (DUF1488) VM_00235 PF00132 Bacterial transferase hexapeptide (six repeats) VM_00280 PF02537 VM_00280 VM_00285 PF01964 ThiC family VM_00285 PF13667 ThiC-associated domain VM_00290 PF02581 Thiamine monophosphate synthase/TENI VM_00295 PF00899 ThiF family VM_00300 PF02597 ThiS family VM_00305 PF05690 Thiazole biosynthesis protein ThiG VM_00310 PF04055 Radical SAM superfamily VM_00310 PF06968 Biotin and Thiamin Synthesis associated domain VM_00315 PF00557 Metallopeptidase family M24 VM_00315 PF01321 Creatinase/Prolidase N-terminal domain VM_00315 PF16188 VM_00315 VM_00315 PF16189 VM_00315 VM_00320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_00320 PF03466 LysR substrate binding domain VM_00325 PF07690 Major Facilitator Superfamily VM_00335 PF01037 AsnC family VM_00335 PF13404 AsnC-type helix-turn-helix domain VM_00340 PF00563 EAL domain VM_00340 PF00990 GGDEF domain VM_00340 PF13426 PAS domain VM_00345 PF04445 Putative SAM-dependent methyltransferase VM_00355 PF00892 EamA-like transporter family VM_00360 PF00582 Universal stress protein family VM_00370 PF00210 Ferritin-like domain VM_00375 PF10625 VM_00375 VM_00380 PF03486 HI0933-like protein VM_00385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_00385 PF08447 PAS fold VM_00390 PF00892 EamA-like transporter family VM_00395 PF02646 VM_00395 VM_00400 PF01209 ubiE/COQ5 methyltransferase family VM_00405 PF02036 SCP-2 sterol transfer family VM_00410 PF03109 VM_00410 VM_00415 PF02416 mttA/Hcf106 family VM_00420 PF02416 mttA/Hcf106 family VM_00425 PF00902 Sec-independent protein translocase protein (TatC) VM_00430 PF01554 MatE VM_00435 PF04072 Leucine carboxyl methyltransferase VM_00440 PF00717 Peptidase S24-like VM_00440 PF01726 LexA DNA binding domain VM_00445 PF01553 Acyltransferase VM_00450 PF01040 UbiA prenyltransferase family VM_00455 PF04345 Chorismate lyase VM_00465 PF03748 VM_00465 VM_00470 PF01694 Rhomboid family VM_00470 PF12122 Protein of unknown function (DUF3582) VM_00475 PF00581 Rhodanese-like domain VM_00485 PF01026 TatD related DNase VM_00490 PF00490 Delta-aminolevulinic acid dehydratase VM_00495 PF00583 Acetyltransferase (GNAT) family VM_00500 PF00476 DNA polymerase family A VM_00500 PF01367 5'-3' exonuclease, C-terminal SAM fold VM_00500 PF01612 3'-5' exonuclease VM_00500 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VM_00505 PF02281 Transposase Tn5 dimerisation domain VM_00505 PF14706 Transposase DNA-binding VM_00510 PF01926 50S ribosome-binding GTPase VM_00515 PF00034 Cytochrome c VM_00520 PF13489 Methyltransferase domain VM_00525 PF04220 VM_00525 VM_00530 PF10675 VM_00530 VM_00535 PF04055 Radical SAM superfamily VM_00535 PF06969 HemN C-terminal domain VM_00540 PF07219 VM_00540 VM_00545 PF04375 VM_00545 VM_00550 PF02602 Uroporphyrinogen-III synthase HemD VM_00555 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VM_00555 PF03900 Porphobilinogen deaminase, C-terminal domain VM_00565 PF01295 VM_00565 VM_00565 PF12633 VM_00565 VM_00570 PF01491 Frataxin-like domain VM_00575 PF13627 VM_00575 VM_00580 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VM_00580 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VM_00585 PF01678 Diaminopimelate epimerase VM_00590 PF04340 Protein of unknown function, DUF484 VM_00595 PF00589 Phage integrase family VM_00595 PF02899 Phage integrase, N-terminal SAM-like domain VM_00600 PF13419 Haloacid dehalogenase-like hydrolase VM_00605 PF00563 EAL domain VM_00605 PF00990 GGDEF domain VM_00605 PF08495 VM_00605 VM_00610 PF03942 VM_00610 VM_00620 PF08282 haloacid dehalogenase-like hydrolase VM_00625 PF12146 Putative lysophospholipase VM_00630 PF01810 VM_00630 VM_00635 PF00563 EAL domain VM_00635 PF08668 HDOD domain VM_00640 PF00210 Ferritin-like domain VM_00645 PF01757 VM_00645 VM_00650 PF10694 Protein of unknown function (DUF2500) VM_00665 PF07947 VM_00665 VM_00670 PF06611 VM_00670 VM_00675 PF03602 Conserved hypothetical protein 95 VM_00680 PF00448 SRP54-type protein, GTPase domain VM_00680 PF02881 SRP54-type protein, helical bundle domain VM_00685 PF00005 ABC transporter VM_00695 PF00140 Sigma-70 factor, region 1 VM_00695 PF04542 Sigma-70 region 2 VM_00695 PF04545 Sigma-70, region 4 VM_00705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VM_00705 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_00710 PF00440 Bacterial regulatory proteins, tetR family VM_00715 PF07226 VM_00715 VM_00720 PF05958 tRNA (Uracil-5-)-methyltransferase VM_00725 PF00593 TonB dependent receptor VM_00725 PF07715 TonB-dependent Receptor Plug Domain VM_00730 PF01902 ATP-binding region VM_00735 PF01177 Asp/Glu/Hydantoin racemase VM_00740 PF00076 RNA recognition motif VM_00800 PF00962 Adenosine/AMP deaminase VM_00805 PF00563 EAL domain VM_00805 PF00990 GGDEF domain VM_00805 PF02743 Cache domain VM_00810 PF00072 Response regulator receiver domain VM_00810 PF00158 Sigma-54 interaction domain VM_00810 PF02954 Bacterial regulatory protein, Fis family VM_00815 PF00512 His Kinase A (phospho-acceptor) domain VM_00815 PF00989 PAS fold VM_00815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_00820 PF13511 VM_00820 VM_00825 PF00120 Glutamine synthetase, catalytic domain VM_00825 PF03951 Glutamine synthetase, beta-Grasp domain VM_00835 PF00009 Elongation factor Tu GTP binding domain VM_00835 PF00679 Elongation factor G C-terminus VM_00835 PF03144 Elongation factor Tu domain 2 VM_00840 PF13521 AAA domain VM_00845 PF03631 VM_00845 VM_00850 PF02580 D-Tyr-tRNA(Tyr) deacylase VM_00855 PF09500 Putative thioesterase (yiiD_Cterm) VM_00855 PF13673 Acetyltransferase (GNAT) domain VM_00860 PF05170 VM_00860 VM_00865 PF01293 Phosphoenolpyruvate carboxykinase VM_00870 PF01430 Hsp33 protein VM_00875 PF01479 S4 domain VM_00880 PF11356 Type IV pilus biogenesis VM_00885 PF00263 VM_00885 VM_00885 PF03958 Bacterial type II/III secretion system short domain VM_00890 PF00437 Type II/IV secretion system protein VM_00895 PF00482 Type II secretion system (T2SS), protein F VM_00900 PF07963 Prokaryotic N-terminal methylation motif VM_00900 PF08334 Type II secretion system (T2SS), protein G VM_00905 PF12019 Type II transport protein GspH VM_00910 PF02501 Type II secretion system (T2SS), protein I VM_00910 PF07963 Prokaryotic N-terminal methylation motif VM_00915 PF07963 Prokaryotic N-terminal methylation motif VM_00915 PF11612 Type II secretion system (T2SS), protein J VM_00920 PF03934 Type II secretion system (T2SS), protein K VM_00925 PF05134 Type II secretion system (T2SS), protein L VM_00925 PF12693 GspL periplasmic domain VM_00930 PF04612 Type II secretion system (T2SS), protein M VM_00935 PF01203 VM_00935 VM_00940 PF00459 Inositol monophosphatase family VM_00945 PF00293 NUDIX domain VM_00950 PF01106 NifU-like domain VM_00950 PF01521 Iron-sulphur cluster biosynthesis VM_00955 PF00156 Phosphoribosyl transferase domain VM_00960 PF00561 alpha/beta hydrolase fold VM_00970 PF00575 S1 RNA binding domain VM_00970 PF09371 Tex-like protein N-terminal domain VM_00970 PF12836 Helix-hairpin-helix motif VM_00970 PF16921 VM_00970 VM_00990 PF09722 VM_00990 VM_00995 PF00717 Peptidase S24-like VM_01000 PF00817 impB/mucB/samB family VM_01000 PF11798 IMS family HHH motif VM_01000 PF11799 impB/mucB/samB family C-terminal domain VM_01000 PF13438 VM_01000 VM_01005 PF07693 VM_01005 VM_01020 PF01026 TatD related DNase VM_01035 PF13250 VM_01035 VM_01035 PF13455 VM_01035 VM_01060 PF12844 Helix-turn-helix domain VM_01070 PF04851 Type III restriction enzyme, res subunit VM_01080 PF01272 Transcription elongation factor, GreA/GreB, C-term VM_01080 PF03449 Transcription elongation factor, N-terminal VM_01090 PF00589 Phage integrase family VM_01090 PF13009 VM_01090 VM_01095 PF00589 Phage integrase family VM_01105 PF00196 Bacterial regulatory proteins, luxR family VM_01110 PF13407 Periplasmic binding protein domain VM_01115 PF00005 ABC transporter VM_01120 PF02653 VM_01120 VM_01125 PF00933 Glycosyl hydrolase family 3 N terminal domain VM_01135 PF00072 Response regulator receiver domain VM_01135 PF00486 Transcriptional regulatory protein, C terminal VM_01140 PF00512 His Kinase A (phospho-acceptor) domain VM_01140 PF00672 HAMP domain VM_01140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_01145 PF00860 Permease family VM_01150 PF00270 DEAD/DEAH box helicase VM_01150 PF00271 Helicase conserved C-terminal domain VM_01150 PF17191 VM_01150 VM_01155 PF02824 TGS domain VM_01155 PF04607 Region found in RelA / SpoT proteins VM_01155 PF13291 ACT domain VM_01155 PF13328 HD domain VM_01160 PF01192 RNA polymerase Rpb6 VM_01165 PF00625 Guanylate kinase VM_01170 PF02592 VM_01170 VM_01175 PF00474 Sodium:solute symporter family VM_01180 PF13937 VM_01180 VM_01185 PF00717 Peptidase S24-like VM_01190 PF13693 Winged helix-turn-helix DNA-binding VM_01195 PF02914 Bacteriophage Mu transposase VM_01195 PF09039 Mu DNA binding, I gamma subdomain VM_01195 PF09299 Mu transposase, C-terminal VM_01200 PF09077 Mu B transposition protein, C terminal VM_01200 PF13401 AAA domain VM_01225 PF11363 VM_01225 VM_01250 PF12961 Domain of Unknown Function with PDB structure (DUF3850) VM_01280 PF06252 VM_01280 VM_01290 PF08765 Mor transcription activator family VM_01295 PF05838 Glycosyl hydrolase 108 VM_01295 PF09374 Predicted Peptidoglycan domain VM_01310 PF01258 Prokaryotic dksA/traR C4-type zinc finger VM_01340 PF04233 VM_01340 VM_01360 PF13472 GDSL-like Lipase/Acylhydrolase family VM_01375 PF10124 VM_01375 VM_01385 PF07030 VM_01385 VM_01390 PF05069 VM_01390 VM_01400 PF10948 VM_01400 VM_01410 PF10618 VM_01410 VM_01415 PF10109 VM_01415 VM_01425 PF07157 VM_01425 VM_01430 PF05954 Phage late control gene D protein (GPD) VM_01435 PF06890 Bacteriophage Mu Gp45 protein VM_01440 PF07409 VM_01440 VM_01445 PF04865 VM_01445 VM_01450 PF10076 VM_01450 VM_01465 PF00999 Sodium/hydrogen exchanger family VM_01465 PF02080 TrkA-C domain VM_01465 PF03471 Transporter associated domain VM_01470 PF00072 Response regulator receiver domain VM_01470 PF00196 Bacterial regulatory proteins, luxR family VM_01475 PF02683 VM_01475 VM_01475 PF11412 Disulphide bond corrector protein DsbC VM_01475 PF13899 Thioredoxin-like VM_01480 PF03605 VM_01480 VM_01485 PF00206 Lyase VM_01485 PF10415 Fumarase C C-terminus VM_01490 PF04186 VM_01490 VM_01495 PF00588 SpoU rRNA Methylase family VM_01500 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VM_01500 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VM_01505 PF00512 His Kinase A (phospho-acceptor) domain VM_01505 PF00672 HAMP domain VM_01505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_01505 PF16527 VM_01505 VM_01510 PF00072 Response regulator receiver domain VM_01510 PF00486 Transcriptional regulatory protein, C terminal VM_01515 PF07813 LTXXQ motif family protein VM_01520 PF01545 Cation efflux family VM_01520 PF16916 VM_01520 VM_01525 PF00365 Phosphofructokinase VM_01530 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VM_01535 PF06005 Protein of unknown function (DUF904) VM_01540 PF02219 Methylenetetrahydrofolate reductase VM_01545 PF00696 Amino acid kinase family VM_01545 PF00742 Homoserine dehydrogenase VM_01545 PF03447 Homoserine dehydrogenase, NAD binding domain VM_01550 PF01053 Cys/Met metabolism PLP-dependent enzyme VM_01555 PF01340 Met Apo-repressor, MetJ VM_01560 PF00390 Malic enzyme, N-terminal domain VM_01560 PF03949 Malic enzyme, NAD binding domain VM_01565 PF01197 Ribosomal protein L31 VM_01570 PF00270 DEAD/DEAH box helicase VM_01570 PF00271 Helicase conserved C-terminal domain VM_01575 PF00356 Bacterial regulatory proteins, lacI family VM_01575 PF13377 Periplasmic binding protein-like domain VM_01580 PF05036 Sporulation related domain VM_01585 PF00227 Proteasome subunit VM_01590 PF00004 ATPase family associated with various cellular activities (AAA) VM_01590 PF07724 AAA domain (Cdc48 subfamily) VM_01590 PF10431 C-terminal, D2-small domain, of ClpB protein VM_01595 PF01040 UbiA prenyltransferase family VM_01600 PF03737 Demethylmenaquinone methyltransferase VM_01605 PF01554 MatE VM_01610 PF00121 Triosephosphate isomerase VM_01615 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase VM_01625 PF11333 VM_01625 VM_01630 PF13412 Winged helix-turn-helix DNA-binding VM_01635 PF00166 Chaperonin 10 Kd subunit VM_01640 PF00118 TCP-1/cpn60 chaperonin family VM_01650 PF04055 Radical SAM superfamily VM_01650 PF13353 4Fe-4S single cluster domain VM_01655 PF01132 Elongation factor P (EF-P) OB domain VM_01655 PF08207 Elongation factor P (EF-P) KOW-like domain VM_01655 PF09285 Elongation factor P, C-terminal VM_01660 PF02313 Fumarate reductase subunit D VM_01665 PF02300 Fumarate reductase subunit C VM_01670 PF13085 2Fe-2S iron-sulfur cluster binding domain VM_01670 PF13183 4Fe-4S dicluster domain VM_01675 PF00890 FAD binding domain VM_01675 PF02910 Fumarate reductase flavoprotein C-term VM_01680 PF00152 tRNA synthetases class II (D, K and N) VM_01685 PF00581 Rhodanese-like domain VM_01690 PF02556 Preprotein translocase subunit SecB VM_01695 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VM_01695 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VM_01700 PF00132 Bacterial transferase hexapeptide (six repeats) VM_01700 PF06426 Serine acetyltransferase, N-terminal VM_01705 PF03551 Transcriptional regulator PadR-like family VM_01705 PF10400 Virulence activator alpha C-term VM_01710 PF00311 Phosphoenolpyruvate carboxylase VM_01715 PF01546 Peptidase family M20/M25/M40 VM_01715 PF07687 Peptidase dimerisation domain VM_01720 PF01118 Semialdehyde dehydrogenase, NAD binding domain VM_01720 PF02774 Semialdehyde dehydrogenase, dimerisation domain VM_01725 PF00696 Amino acid kinase family VM_01730 PF00764 Arginosuccinate synthase VM_01735 PF00206 Lyase VM_01735 PF14698 Argininosuccinate lyase C-terminal VM_01740 PF12292 VM_01740 VM_01750 PF00462 Glutaredoxin VM_01750 PF08534 Redoxin VM_01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_01755 PF03466 LysR substrate binding domain VM_01760 PF00905 Penicillin binding protein transpeptidase domain VM_01760 PF00912 Transglycosylase VM_01760 PF17092 VM_01760 VM_01765 PF11104 Type IV pilus assembly protein PilM; VM_01770 PF05137 VM_01770 VM_01775 PF04350 Pilus assembly protein, PilO VM_01780 PF04351 Pilus assembly protein, PilP VM_01785 PF00263 VM_01785 VM_01785 PF03958 Bacterial type II/III secretion system short domain VM_01785 PF07660 Secretin and TonB N terminus short domain VM_01790 PF01202 Shikimate kinase VM_01795 PF01761 3-dehydroquinate synthase VM_01800 PF05036 Sporulation related domain VM_01800 PF13401 AAA domain VM_01805 PF02086 D12 class N6 adenine-specific DNA methyltransferase VM_01810 PF00834 Ribulose-phosphate 3 epimerase family VM_01815 PF13419 Haloacid dehalogenase-like hydrolase VM_01820 PF00579 tRNA synthetases class I (W and Y) VM_01830 PF00932 Lamin Tail Domain VM_01835 PF00919 Uncharacterized protein family UPF0004 VM_01835 PF04055 Radical SAM superfamily VM_01840 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_01845 PF00117 Glutamine amidotransferase class-I VM_01850 PF00202 Aminotransferase class-III VM_01855 PF04958 Arginine N-succinyltransferase beta subunit VM_01860 PF00171 Aldehyde dehydrogenase family VM_01865 PF07063 Domain of unknown function (DUF1338) VM_01870 PF00027 Cyclic nucleotide-binding domain VM_01870 PF00325 Bacterial regulatory proteins, crp family VM_01875 PF00485 Phosphoribulokinase / Uridine kinase family VM_01880 PF06794 Uncharacterised protein family (UPF0270) VM_01885 PF00561 alpha/beta hydrolase fold VM_01890 PF09523 VM_01890 VM_01895 PF00005 ABC transporter VM_01895 PF09496 Cenp-O kinetochore centromere component VM_01895 PF12848 ABC transporter VM_01900 PF02525 Flavodoxin-like fold VM_01905 PF00999 Sodium/hydrogen exchanger family VM_01905 PF02254 TrkA-N domain VM_01910 PF09526 VM_01910 VM_01915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VM_01920 PF01112 Asparaginase VM_01925 PF00709 Adenylosuccinate synthetase VM_01930 PF08238 Sel1 repeat VM_01935 PF00884 Sulfatase VM_01935 PF11893 VM_01935 VM_01940 PF00575 S1 RNA binding domain VM_01940 PF00773 RNB domain VM_01940 PF08206 Ribonuclease B OB domain VM_01940 PF08461 Ribonuclease R winged-helix domain VM_01945 PF00588 SpoU rRNA Methylase family VM_01945 PF08032 RNA 2'-O ribose methyltransferase substrate binding VM_01950 PF00338 Ribosomal protein S10p/S20e VM_01955 PF00297 Ribosomal protein L3 VM_01960 PF00573 Ribosomal protein L4/L1 family VM_01965 PF00276 Ribosomal protein L23 VM_01970 PF00181 Ribosomal Proteins L2, RNA binding domain VM_01970 PF03947 Ribosomal Proteins L2, C-terminal domain VM_01975 PF00203 Ribosomal protein S19 VM_01980 PF00237 Ribosomal protein L22p/L17e VM_01985 PF00189 Ribosomal protein S3, C-terminal domain VM_01985 PF07650 KH domain VM_01990 PF00252 Ribosomal protein L16p/L10e VM_01995 PF00831 Ribosomal L29 protein VM_02000 PF00366 Ribosomal protein S17 VM_02005 PF00238 Ribosomal protein L14p/L23e VM_02010 PF00467 KOW motif VM_02010 PF17136 VM_02010 VM_02015 PF00281 Ribosomal protein L5 VM_02015 PF00673 ribosomal L5P family C-terminus VM_02020 PF00253 Ribosomal protein S14p/S29e VM_02025 PF00410 Ribosomal protein S8 VM_02030 PF00347 Ribosomal protein L6 VM_02035 PF00861 Ribosomal L18p/L5e family VM_02040 PF00333 Ribosomal protein S5, N-terminal domain VM_02040 PF03719 Ribosomal protein S5, C-terminal domain VM_02045 PF00327 Ribosomal protein L30p/L7e VM_02050 PF00828 Ribosomal protein L18e/L15 VM_02055 PF00344 SecY translocase VM_02060 PF00444 Ribosomal protein L36 VM_02065 PF00416 Ribosomal protein S13/S18 VM_02070 PF00411 Ribosomal protein S11 VM_02075 PF00163 Ribosomal protein S4/S9 N-terminal domain VM_02075 PF01479 S4 domain VM_02080 PF01000 RNA polymerase Rpb3/RpoA insert domain VM_02080 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VM_02080 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VM_02085 PF01196 Ribosomal protein L17 VM_02090 PF11075 VM_02090 VM_02095 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VM_02095 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VM_02100 PF04225 Opacity-associated protein A LysM-like domain VM_02100 PF08525 VM_02100 VM_02105 PF00892 EamA-like transporter family VM_02110 PF13673 Acetyltransferase (GNAT) domain VM_02115 PF00270 DEAD/DEAH box helicase VM_02115 PF00271 Helicase conserved C-terminal domain VM_02115 PF03880 DbpA RNA binding domain VM_02130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VM_02135 PF01507 Phosphoadenosine phosphosulfate reductase family VM_02140 PF00009 Elongation factor Tu GTP binding domain VM_02145 PF01583 Adenylylsulphate kinase VM_02150 PF10987 VM_02150 VM_02155 PF11736 Protein of unknown function (DUF3299) VM_02160 PF02687 VM_02160 VM_02160 PF12704 MacB-like periplasmic core domain VM_02165 PF00005 ABC transporter VM_02170 PF10986 VM_02170 VM_02175 PF10795 VM_02175 VM_02180 PF09695 VM_02180 VM_02185 PF01625 Peptide methionine sulfoxide reductase VM_02190 PF01103 Surface antigen VM_02190 PF17243 VM_02190 VM_02195 PF04357 VM_02195 VM_02200 PF06094 AIG2-like family VM_02205 PF10973 VM_02205 VM_02210 PF00719 Inorganic pyrophosphatase VM_02215 PF00316 Fructose-1-6-bisphosphatase VM_02225 PF01225 Mur ligase family, catalytic domain VM_02225 PF02875 Mur ligase family, glutamate ligase domain VM_02225 PF08245 Mur ligase middle domain VM_02230 PF02441 Flavoprotein VM_02240 PF13343 Bacterial extracellular solute-binding protein VM_02245 PF00528 Binding-protein-dependent transport system inner membrane component VM_02250 PF00005 ABC transporter VM_02255 PF04751 Protein of unknown function (DUF615) VM_02260 PF01523 Putative modulator of DNA gyrase VM_02265 PF00571 CBS domain VM_02265 PF01769 Divalent cation transporter VM_02265 PF03448 MgtE intracellular N domain VM_02270 PF00381 PTS HPr component phosphorylation site VM_02275 PF03668 VM_02275 VM_02280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_02285 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VM_02290 PF00309 VM_02290 VM_02290 PF04552 Sigma-54, DNA binding domain VM_02290 PF04963 Sigma-54 factor, core binding domain VM_02295 PF00005 ABC transporter VM_02295 PF12399 Branched-chain amino acid ATP-binding cassette transporter VM_02300 PF03968 OstA-like protein VM_02305 PF06835 Lipopolysaccharide-assembly, LptC-related VM_02310 PF08282 haloacid dehalogenase-like hydrolase VM_02315 PF00571 CBS domain VM_02315 PF01380 SIS domain VM_02320 PF01699 Sodium/calcium exchanger protein VM_02330 PF00005 ABC transporter VM_02335 PF02405 VM_02335 VM_02340 PF02470 VM_02340 VM_02345 PF05494 Toluene tolerance, Ttg2 VM_02350 PF13466 STAS domain VM_02355 PF01722 BolA-like protein VM_02360 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VM_02365 PF01553 Acyltransferase VM_02370 PF01042 Endoribonuclease L-PSP VM_02375 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VM_02375 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VM_02380 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VM_02380 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VM_02385 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VM_02385 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VM_02390 PF02562 PhoH-like protein VM_02390 PF13638 PIN domain VM_02400 PF00176 SNF2 family N-terminal domain VM_02400 PF00271 Helicase conserved C-terminal domain VM_02400 PF12137 RNA polymerase recycling family C-terminal VM_02405 PF00849 RNA pseudouridylate synthase VM_02410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VM_02410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VM_02415 PF05987 VM_02415 VM_02420 PF01435 Peptidase family M48 VM_02425 PF00133 tRNA synthetases class I (I, L, M and V) VM_02425 PF08264 Anticodon-binding domain of tRNA VM_02425 PF10458 Valyl tRNA synthetase tRNA binding arm VM_02430 PF04364 DNA polymerase III chi subunit, HolC VM_02435 PF00883 Cytosol aminopeptidase family, catalytic domain VM_02435 PF02789 Cytosol aminopeptidase family, N-terminal domain VM_02440 PF03739 VM_02440 VM_02445 PF03739 VM_02445 VM_02450 PF06271 VM_02450 VM_02460 PF01966 HD domain VM_02460 PF11871 VM_02460 VM_02495 PF04784 VM_02495 VM_02500 PF00694 Aconitase C-terminal domain VM_02505 PF00330 Aconitase family (aconitate hydratase) VM_02510 PF00180 Isocitrate/isopropylmalate dehydrogenase VM_02515 PF00682 HMGL-like VM_02515 PF08502 LeuA allosteric (dimerisation) domain VM_02520 PF00440 Bacterial regulatory proteins, tetR family VM_02520 PF14514 Transcriptional regulator, TetR, C-terminal VM_02525 PF01569 PAP2 superfamily VM_02530 PF13528 Glycosyl transferase family 1 VM_02535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_02535 PF03466 LysR substrate binding domain VM_02540 PF00501 AMP-binding enzyme VM_02545 PF00205 Thiamine pyrophosphate enzyme, central domain VM_02545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VM_02545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VM_02550 PF10369 Small subunit of acetolactate synthase VM_02550 PF13710 ACT domain VM_02555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VM_02555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VM_02560 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VM_02565 PF01812 5-formyltetrahydrofolate cyclo-ligase family VM_02575 PF05164 Cell division protein ZapA VM_02580 PF03695 Uncharacterised protein family (UPF0149) VM_02585 PF01494 FAD binding domain VM_02590 PF01494 FAD binding domain VM_02595 PF06526 Protein of unknown function (DUF1107) VM_02600 PF01571 Aminomethyltransferase folate-binding domain VM_02605 PF03937 Flavinator of succinate dehydrogenase VM_02615 PF00890 FAD binding domain VM_02615 PF02910 Fumarate reductase flavoprotein C-term VM_02625 PF04542 Sigma-70 region 2 VM_02625 PF08281 Sigma-70, region 4 VM_02630 PF03872 Anti sigma-E protein RseA, N-terminal domain VM_02630 PF03873 Anti sigma-E protein RseA, C-terminal domain VM_02635 PF03888 MucB/RseB family VM_02635 PF17188 VM_02635 VM_02640 PF04246 VM_02640 VM_02645 PF00009 Elongation factor Tu GTP binding domain VM_02645 PF00679 Elongation factor G C-terminus VM_02645 PF03144 Elongation factor Tu domain 2 VM_02645 PF06421 GTP-binding protein LepA C-terminus VM_02650 PF00717 Peptidase S24-like VM_02650 PF10502 Signal peptidase, peptidase S26 VM_02655 PF00035 Double-stranded RNA binding motif VM_02655 PF14622 Ribonuclease-III-like VM_02660 PF01926 50S ribosome-binding GTPase VM_02660 PF07650 KH domain VM_02665 PF02565 Recombination protein O C terminal VM_02665 PF11967 Recombination protein O N terminal VM_02670 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VM_02675 PF01648 4'-phosphopantetheinyl transferase superfamily VM_02695 PF00072 Response regulator receiver domain VM_02695 PF00512 His Kinase A (phospho-acceptor) domain VM_02695 PF01627 Hpt domain VM_02695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_02695 PF09984 VM_02695 VM_02700 PF01938 TRAM domain VM_02700 PF05958 tRNA (Uracil-5-)-methyltransferase VM_02705 PF02824 TGS domain VM_02705 PF04607 Region found in RelA / SpoT proteins VM_02705 PF13291 ACT domain VM_02705 PF13328 HD domain VM_02710 PF03819 MazG nucleotide pyrophosphohydrolase domain VM_02720 PF00117 Glutamine amidotransferase class-I VM_02720 PF06418 CTP synthase N-terminus VM_02725 PF00113 Enolase, C-terminal TIM barrel domain VM_02725 PF03952 Enolase, N-terminal domain VM_02730 PF08543 Phosphomethylpyrimidine kinase VM_02735 PF03222 Tryptophan/tyrosine permease family VM_02740 PF01212 Beta-eliminating lyase VM_02745 PF01743 Poly A polymerase head domain VM_02745 PF01966 HD domain VM_02745 PF12627 Probable RNA and SrmB- binding site of polymerase A VM_02750 PF01471 Putative peptidoglycan binding domain VM_02750 PF13401 AAA domain VM_02755 PF16537 VM_02755 VM_02760 PF08239 Bacterial SH3 domain VM_02765 PF01384 VM_02765 VM_02770 PF01865 Protein of unknown function DUF47 VM_02775 PF01928 CYTH domain VM_02775 PF05235 CHAD domain VM_02780 PF00520 Ion transport protein VM_02785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_02790 PF03710 Glutamate-ammonia ligase adenylyltransferase VM_02790 PF08335 GlnD PII-uridylyltransferase VM_02795 PF00294 pfkB family carbohydrate kinase VM_02795 PF01467 Cytidylyltransferase VM_02800 PF02321 Outer membrane efflux protein VM_02805 PF00293 NUDIX domain VM_02810 PF06853 VM_02810 VM_02815 PF00149 Calcineurin-like phosphoesterase VM_02820 PF05728 Uncharacterised protein family (UPF0227) VM_02825 PF00204 DNA gyrase B VM_02825 PF00986 DNA gyrase B subunit, carboxyl terminus VM_02825 PF01751 Toprim domain VM_02825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_02830 PF00521 DNA gyrase/topoisomerase IV, subunit A VM_02830 PF03989 DNA gyrase C-terminal domain, beta-propeller VM_02835 PF03884 Domain of unknown function (DUF329) VM_02840 PF07072 Protein of unknown function (DUF1342) VM_02845 PF01121 Dephospho-CoA kinase VM_02850 PF01478 Type IV leader peptidase family VM_02850 PF06750 VM_02850 VM_02855 PF00482 Type II secretion system (T2SS), protein F VM_02860 PF00437 Type II/IV secretion system protein VM_02860 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VM_02865 PF00114 Pilin (bacterial filament) VM_02865 PF07963 Prokaryotic N-terminal methylation motif VM_02870 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VM_02870 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VM_02875 PF01510 N-acetylmuramoyl-L-alanine amidase VM_02880 PF00258 Flavodoxin VM_02885 PF00589 Phage integrase family VM_02885 PF02899 Phage integrase, N-terminal SAM-like domain VM_02890 PF10411 Disulfide bond isomerase protein N-terminus VM_02890 PF13098 Thioredoxin-like domain VM_02895 PF01368 DHH family VM_02895 PF02272 DHHA1 domain VM_02900 PF01368 DHH family VM_02900 PF02833 DHHA2 domain VM_02905 PF00149 Calcineurin-like phosphoesterase VM_02905 PF02872 5'-nucleotidase, C-terminal domain VM_02910 PF00392 Bacterial regulatory proteins, gntR family VM_02910 PF07729 FCD domain VM_02915 PF00456 Transketolase, thiamine diphosphate binding domain VM_02920 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VM_02920 PF00364 Biotin-requiring enzyme VM_02920 PF02817 e3 binding domain VM_02925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VM_02925 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_02935 PF01795 MraW methylase family VM_02940 PF04999 VM_02940 VM_02945 PF00905 Penicillin binding protein transpeptidase domain VM_02945 PF03717 Penicillin-binding Protein dimerisation domain VM_02950 PF01225 Mur ligase family, catalytic domain VM_02950 PF02875 Mur ligase family, glutamate ligase domain VM_02950 PF08245 Mur ligase middle domain VM_02955 PF01225 Mur ligase family, catalytic domain VM_02955 PF02875 Mur ligase family, glutamate ligase domain VM_02955 PF08245 Mur ligase middle domain VM_02960 PF00953 Glycosyl transferase family 4 VM_02960 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VM_02965 PF02875 Mur ligase family, glutamate ligase domain VM_02965 PF08245 Mur ligase middle domain VM_02970 PF01098 VM_02970 VM_02975 PF03033 Glycosyltransferase family 28 N-terminal domain VM_02975 PF04101 Glycosyltransferase family 28 C-terminal domain VM_02980 PF01225 Mur ligase family, catalytic domain VM_02980 PF02875 Mur ligase family, glutamate ligase domain VM_02980 PF08245 Mur ligase middle domain VM_02985 PF03799 Cell division protein FtsQ VM_02985 PF08478 POTRA domain, FtsQ-type VM_02990 PF02491 SHS2 domain inserted in FTSA VM_02990 PF14450 Cell division protein FtsA VM_02995 PF00091 Tubulin/FtsZ family, GTPase domain VM_02995 PF12327 FtsZ family, C-terminal domain VM_03000 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VM_03005 PF05258 VM_03005 VM_03010 PF01043 SecA preprotein cross-linking domain VM_03010 PF02810 SEC-C motif VM_03010 PF07516 SecA Wing and Scaffold domain VM_03010 PF07517 SecA DEAD-like domain VM_03015 PF00293 NUDIX domain VM_03020 PF01113 Dihydrodipicolinate reductase, N-terminus VM_03020 PF05173 Dihydrodipicolinate reductase, C-terminus VM_03025 PF00117 Glutamine amidotransferase class-I VM_03025 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VM_03030 PF02142 MGS-like domain VM_03030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VM_03030 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VM_03035 PF01925 VM_03035 VM_03040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_03040 PF03466 LysR substrate binding domain VM_03045 PF03458 VM_03045 VM_03050 PF01497 Periplasmic binding protein VM_03055 PF03186 VM_03055 VM_03060 PF01048 Phosphorylase superfamily VM_03065 PF07386 VM_03065 VM_03070 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_03070 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VM_03075 PF00310 Glutamine amidotransferases class-II VM_03075 PF01493 GXGXG motif VM_03075 PF01645 Conserved region in glutamate synthase VM_03075 PF04898 Glutamate synthase central domain VM_03080 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_03080 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VM_03085 PF00310 Glutamine amidotransferases class-II VM_03085 PF01493 GXGXG motif VM_03085 PF01645 Conserved region in glutamate synthase VM_03085 PF04898 Glutamate synthase central domain VM_03090 PF04055 Radical SAM superfamily VM_03090 PF16199 VM_03090 VM_03095 PF00990 GGDEF domain VM_03095 PF08448 PAS fold VM_03095 PF13188 PAS domain VM_03100 PF00072 Response regulator receiver domain VM_03100 PF00512 His Kinase A (phospho-acceptor) domain VM_03100 PF00989 PAS fold VM_03100 PF01627 Hpt domain VM_03100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_03105 PF00072 Response regulator receiver domain VM_03105 PF00486 Transcriptional regulatory protein, C terminal VM_03110 PF11697 VM_03110 VM_03115 PF03737 Demethylmenaquinone methyltransferase VM_03125 PF00696 Amino acid kinase family VM_03125 PF00742 Homoserine dehydrogenase VM_03125 PF01842 ACT domain VM_03125 PF03447 Homoserine dehydrogenase, NAD binding domain VM_03125 PF13840 ACT domain VM_03130 PF00288 GHMP kinases N terminal domain VM_03130 PF08544 GHMP kinases C terminal VM_03135 PF00291 Pyridoxal-phosphate dependent enzyme VM_03135 PF14821 Threonine synthase N terminus VM_03140 PF01228 Glycine radical VM_03145 PF01261 Xylose isomerase-like TIM barrel VM_03150 PF03167 Uracil DNA glycosylase superfamily VM_03155 PF01814 Hemerythrin HHE cation binding domain VM_03160 PF00665 Integrase core domain VM_03160 PF13551 Winged helix-turn helix VM_03165 PF12065 VM_03165 VM_03170 PF01235 VM_03170 VM_03175 PF03883 VM_03175 VM_03180 PF01026 TatD related DNase VM_03185 PF01773 Na+ dependent nucleoside transporter N-terminus VM_03185 PF07662 Na+ dependent nucleoside transporter C-terminus VM_03185 PF07670 Nucleoside recognition VM_03195 PF01791 DeoC/LacD family aldolase VM_03200 PF00591 Glycosyl transferase family, a/b domain VM_03200 PF02885 Glycosyl transferase family, helical bundle domain VM_03200 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VM_03205 PF01676 Metalloenzyme superfamily VM_03210 PF01048 Phosphorylase superfamily VM_03215 PF10144 VM_03215 VM_03220 PF00702 haloacid dehalogenase-like hydrolase VM_03225 PF07238 PilZ domain VM_03230 PF13481 AAA domain VM_03230 PF13541 Subunit ChlI of Mg-chelatase VM_03235 PF00009 Elongation factor Tu GTP binding domain VM_03235 PF00679 Elongation factor G C-terminus VM_03235 PF03144 Elongation factor Tu domain 2 VM_03235 PF03764 Elongation factor G, domain IV VM_03235 PF14492 Elongation Factor G, domain II VM_03240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_03240 PF03466 LysR substrate binding domain VM_03250 PF00501 AMP-binding enzyme VM_03255 PF13487 HD domain VM_03260 PF02417 VM_03260 VM_03265 PF00703 Glycosyl hydrolases family 2 VM_03265 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VM_03265 PF02837 Glycosyl hydrolases family 2, sugar binding domain VM_03265 PF02929 Beta galactosidase small chain VM_03265 PF16353 VM_03265 VM_03270 PF00356 Bacterial regulatory proteins, lacI family VM_03270 PF13377 Periplasmic binding protein-like domain VM_03275 PF01588 Putative tRNA binding domain VM_03280 PF06094 AIG2-like family VM_03285 PF01544 CorA-like Mg2+ transporter protein VM_03290 PF08443 RimK-like ATP-grasp domain VM_03290 PF14401 VM_03290 VM_03295 PF00583 Acetyltransferase (GNAT) family VM_03295 PF11814 VM_03295 VM_03300 PF05940 VM_03300 VM_03305 PF14602 Hexapeptide repeat of succinyl-transferase VM_03305 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VM_03305 PF14790 Tetrahydrodipicolinate N-succinyltransferase N-terminal VM_03315 PF07130 YebG protein VM_03320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_03320 PF03466 LysR substrate binding domain VM_03325 PF03595 Voltage-dependent anion channel VM_03330 PF04257 Exodeoxyribonuclease V, gamma subunit VM_03335 PF00580 UvrD/REP helicase N-terminal domain VM_03335 PF12705 PD-(D/E)XK nuclease superfamily VM_03335 PF13361 UvrD-like helicase C-terminal domain VM_03340 PF13538 UvrD-like helicase C-terminal domain VM_03340 PF13604 AAA domain VM_03355 PF00696 Amino acid kinase family VM_03360 PF11012 VM_03360 VM_03365 PF03562 MltA specific insert domain VM_03365 PF06725 3D domain VM_03370 PF00899 ThiF family VM_03375 PF02657 Fe-S metabolism associated domain VM_03380 PF00266 Aminotransferase class-V VM_03385 PF01965 DJ-1/PfpI family VM_03390 PF02558 Ketopantoate reductase PanE/ApbA VM_03390 PF08546 Ketopantoate reductase PanE/ApbA C terminal VM_03395 PF03502 Nucleoside-specific channel-forming protein, Tsx VM_03400 PF02190 ATP-dependent protease La (LON) domain VM_03405 PF04542 Sigma-70 region 2 VM_03405 PF04545 Sigma-70, region 4 VM_03410 PF12973 ChrR Cupin-like domain VM_03410 PF13490 Putative zinc-finger VM_03415 PF07690 Major Facilitator Superfamily VM_03420 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VM_03425 PF03923 VM_03425 VM_03430 PF05175 Methyltransferase small domain VM_03435 PF01722 BolA-like protein VM_03440 PF05896 VM_03440 VM_03440 PF11973 VM_03440 VM_03445 PF03116 VM_03445 VM_03450 PF04205 FMN-binding domain VM_03455 PF02508 VM_03455 VM_03460 PF02508 VM_03460 VM_03465 PF00111 2Fe-2S iron-sulfur cluster binding domain VM_03465 PF00175 Oxidoreductase NAD-binding domain VM_03465 PF00970 Oxidoreductase FAD-binding domain VM_03475 PF02424 ApbE family VM_03480 PF04400 VM_03480 VM_03485 PF00817 impB/mucB/samB family VM_03485 PF11798 IMS family HHH motif VM_03485 PF11799 impB/mucB/samB family C-terminal domain VM_03490 PF11101 VM_03490 VM_03500 PF00209 Sodium:neurotransmitter symporter family VM_03505 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VM_03510 PF08443 RimK-like ATP-grasp domain VM_03515 PF05618 Putative ATP-dependant zinc protease VM_03520 PF01546 Peptidase family M20/M25/M40 VM_03520 PF07687 Peptidase dimerisation domain VM_03525 PF00860 Permease family VM_03530 PF00156 Phosphoribosyl transferase domain VM_03535 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VM_03540 PF07417 Transcriptional regulator Crl VM_03545 PF00696 Amino acid kinase family VM_03545 PF01472 PUA domain VM_03550 PF00171 Aldehyde dehydrogenase family VM_03555 PF03477 ATP cone domain VM_03560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VM_03560 PF01872 RibD C-terminal domain VM_03565 PF00677 Lumazine binding domain VM_03570 PF00925 GTP cyclohydrolase II VM_03570 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VM_03575 PF00885 6,7-dimethyl-8-ribityllumazine synthase VM_03580 PF01029 NusB family VM_03585 PF00586 AIR synthase related protein, N-terminal domain VM_03585 PF02769 AIR synthase related protein, C-terminal domain VM_03590 PF04608 Phosphatidylglycerophosphatase A VM_03595 PF11944 VM_03595 VM_03600 PF01909 Nucleotidyltransferase domain VM_03600 PF01966 HD domain VM_03600 PF08335 GlnD PII-uridylyltransferase VM_03605 PF00557 Metallopeptidase family M24 VM_03610 PF00318 Ribosomal protein S2 VM_03615 PF00889 Elongation factor TS VM_03620 PF00696 Amino acid kinase family VM_03625 PF01765 Ribosome recycling factor VM_03630 PF01255 Putative undecaprenyl diphosphate synthase VM_03635 PF01148 Cytidylyltransferase family VM_03640 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VM_03640 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal VM_03640 PF13288 DXP reductoisomerase C-terminal domain VM_03645 PF02163 Peptidase family M50 VM_03650 PF01103 Surface antigen VM_03650 PF07244 Surface antigen variable number repeat VM_03655 PF03938 Outer membrane protein (OmpH-like) VM_03660 PF00132 Bacterial transferase hexapeptide (six repeats) VM_03660 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VM_03665 PF07977 FabA-like domain VM_03670 PF00132 Bacterial transferase hexapeptide (six repeats) VM_03670 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VM_03675 PF02684 VM_03675 VM_03680 PF01351 Ribonuclease HII VM_03685 PF01336 OB-fold nucleic acid binding domain VM_03685 PF02811 PHP domain VM_03685 PF07733 Bacterial DNA polymerase III alpha subunit VM_03685 PF14579 Helix-hairpin-helix motif VM_03690 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VM_03695 PF01171 PP-loop family VM_03695 PF09179 TilS substrate binding domain VM_03695 PF11734 TilS substrate C-terminal domain VM_03700 PF00034 Cytochrome c VM_03705 PF00543 Nitrogen regulatory protein P-II VM_03710 PF03372 Endonuclease/Exonuclease/phosphatase family VM_03715 PF01464 Transglycosylase SLT domain VM_03715 PF01476 LysM domain VM_03720 PF00753 Metallo-beta-lactamase superfamily VM_03720 PF16123 VM_03720 VM_03725 PF08241 Methyltransferase domain VM_03730 PF00075 RNase H VM_03735 PF00929 Exonuclease VM_03745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VM_03745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VM_03745 PF09317 VM_03745 VM_03750 PF13580 SIS domain VM_03755 PF13230 Glutamine amidotransferases class-II VM_03760 PF00551 Formyl transferase VM_03765 PF00586 AIR synthase related protein, N-terminal domain VM_03765 PF02769 AIR synthase related protein, C-terminal domain VM_03770 PF14681 Uracil phosphoribosyltransferase VM_03775 PF00849 RNA pseudouridylate synthase VM_03775 PF01479 S4 domain VM_03780 PF01713 Smr domain VM_03785 PF11346 VM_03785 VM_03795 PF01963 VM_03795 VM_03800 PF00728 Glycosyl hydrolase family 20, catalytic domain VM_03800 PF02838 Glycosyl hydrolase family 20, domain 2 VM_03800 PF03173 Putative carbohydrate binding domain VM_03800 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VM_03805 PF04214 VM_03805 VM_03810 PF00122 E1-E2 ATPase VM_03810 PF00403 Heavy-metal-associated domain VM_03810 PF00702 haloacid dehalogenase-like hydrolase VM_03815 PF00749 tRNA synthetases class I (E and Q), catalytic domain VM_03820 PF00691 OmpA family VM_03820 PF01389 OmpA-like transmembrane domain VM_03835 PF16538 VM_03835 VM_03835 PF16539 VM_03835 VM_03835 PF16548 VM_03835 VM_03845 PF02169 LPP20 lipoprotein VM_03850 PF05130 FlgN protein VM_03855 PF04316 Anti-sigma-28 factor, FlgM VM_03860 PF13144 SAF-like VM_03865 PF00072 Response regulator receiver domain VM_03865 PF01584 CheW-like domain VM_03870 PF01739 CheR methyltransferase, SAM binding domain VM_03870 PF03705 CheR methyltransferase, all-alpha domain VM_03880 PF00460 Flagella basal body rod protein VM_03880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_03885 PF03963 VM_03885 VM_03885 PF13860 FlgD Ig-like domain VM_03885 PF13861 FlgD Tudor-like domain VM_03890 PF00460 Flagella basal body rod protein VM_03890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_03890 PF07559 Flagellar basal body protein FlaE VM_03895 PF00460 Flagella basal body rod protein VM_03895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_03900 PF00460 Flagella basal body rod protein VM_03900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_03905 PF02107 VM_03905 VM_03910 PF02119 VM_03910 VM_03915 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VM_03915 PF10135 VM_03915 VM_03920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_03925 PF00669 Bacterial flagellin N-terminal helical region VM_03930 PF00669 Bacterial flagellin N-terminal helical region VM_03930 PF00700 Bacterial flagellin C-terminal helical region VM_03930 PF07196 Flagellin hook IN motif VM_03935 PF00669 Bacterial flagellin N-terminal helical region VM_03935 PF00700 Bacterial flagellin C-terminal helical region VM_03935 PF07196 Flagellin hook IN motif VM_04020 PF01926 50S ribosome-binding GTPase VM_04020 PF06071 Protein of unknown function (DUF933) VM_04025 PF01195 Peptidyl-tRNA hydrolase VM_04030 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VM_04030 PF14572 Phosphoribosyl synthetase-associated domain VM_04035 PF00288 GHMP kinases N terminal domain VM_04035 PF08544 GHMP kinases C terminal VM_04040 PF03550 Outer membrane lipoprotein LolB VM_04045 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VM_04045 PF01488 Shikimate / quinate 5-dehydrogenase VM_04045 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VM_04050 PF00472 RF-1 domain VM_04050 PF03462 PCRF domain VM_04055 PF13847 Methyltransferase domain VM_04060 PF04247 VM_04060 VM_04065 PF13369 VM_04065 VM_04065 PF13371 Tetratricopeptide repeat VM_04070 PF00793 DAHP synthetase I family VM_04075 PF00149 Calcineurin-like phosphoesterase VM_04075 PF02872 5'-nucleotidase, C-terminal domain VM_04080 PF04073 Aminoacyl-tRNA editing domain VM_04085 PF00860 Permease family VM_04090 PF09839 VM_04090 VM_04095 PF09842 VM_04095 VM_04100 PF03358 NADPH-dependent FMN reductase VM_04105 PF03960 ArsC family VM_04110 PF01435 Peptidase family M48 VM_04110 PF14559 Tetratricopeptide repeat VM_04115 PF01206 Sulfurtransferase TusA VM_04120 PF01594 VM_04120 VM_04125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_04125 PF00672 HAMP domain VM_04125 PF02743 Cache domain VM_04140 PF00072 Response regulator receiver domain VM_04150 PF00578 AhpC/TSA family VM_04170 PF00589 Phage integrase family VM_04180 PF13740 ACT domain VM_04185 PF00701 Dihydrodipicolinate synthetase family VM_04190 PF06804 NlpB/DapX lipoprotein VM_04195 PF11446 VM_04195 VM_04200 PF02557 D-alanyl-D-alanine carboxypeptidase VM_04205 PF01546 Peptidase family M20/M25/M40 VM_04205 PF07687 Peptidase dimerisation domain VM_04210 PF03960 ArsC family VM_04215 PF09904 Winged helix-turn helix VM_04220 PF11169 VM_04220 VM_04225 PF11143 VM_04225 VM_04230 PF04261 Dyp-type peroxidase family VM_04235 PF00669 Bacterial flagellin N-terminal helical region VM_04235 PF00700 Bacterial flagellin C-terminal helical region VM_04235 PF07196 Flagellin hook IN motif VM_04240 PF00669 Bacterial flagellin N-terminal helical region VM_04240 PF00700 Bacterial flagellin C-terminal helical region VM_04240 PF07196 Flagellin hook IN motif VM_04245 PF00669 Bacterial flagellin N-terminal helical region VM_04245 PF00700 Bacterial flagellin C-terminal helical region VM_04245 PF07196 Flagellin hook IN motif VM_04250 PF03646 FlaG protein VM_04255 PF02465 VM_04255 VM_04255 PF07195 VM_04255 VM_04255 PF07196 Flagellin hook IN motif VM_04265 PF02561 Flagellar protein FliS VM_04270 PF00158 Sigma-54 interaction domain VM_04270 PF02954 Bacterial regulatory protein, Fis family VM_04270 PF06490 VM_04270 VM_04275 PF00512 His Kinase A (phospho-acceptor) domain VM_04275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_04275 PF13188 PAS domain VM_04280 PF00072 Response regulator receiver domain VM_04280 PF00158 Sigma-54 interaction domain VM_04280 PF02954 Bacterial regulatory protein, Fis family VM_04285 PF02049 VM_04285 VM_04290 PF01514 Secretory protein of YscJ/FliF family VM_04290 PF08345 VM_04290 VM_04295 PF01706 FliG C-terminal domain VM_04295 PF14841 FliG middle domain VM_04295 PF14842 FliG N-terminal domain VM_04300 PF02108 VM_04300 VM_04305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VM_04310 PF02050 Flagellar FliJ protein VM_04315 PF02120 Flagellar hook-length control protein FliK VM_04320 PF03748 VM_04320 VM_04325 PF01052 Surface presentation of antigens (SPOA) VM_04325 PF02154 Flagellar motor switch protein FliM VM_04330 PF01052 Surface presentation of antigens (SPOA) VM_04335 PF04347 VM_04335 VM_04340 PF00813 VM_04340 VM_04345 PF01313 VM_04345 VM_04350 PF01311 VM_04350 VM_04355 PF01312 FlhB HrpN YscU SpaS Family VM_04360 PF01713 Smr domain VM_04365 PF05175 Methyltransferase small domain VM_04375 PF01264 Chorismate synthase VM_04380 PF03458 VM_04380 VM_04385 PF04315 VM_04385 VM_04390 PF08891 VM_04390 VM_04395 PF03358 NADPH-dependent FMN reductase VM_04400 PF01266 FAD dependent oxidoreductase VM_04400 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VM_04405 PF00109 Beta-ketoacyl synthase, N-terminal domain VM_04405 PF02801 Beta-ketoacyl synthase, C-terminal domain VM_04410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VM_04410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VM_04410 PF11890 Domain of unknown function (DUF3410) VM_04415 PF01118 Semialdehyde dehydrogenase, NAD binding domain VM_04415 PF02774 Semialdehyde dehydrogenase, dimerisation domain VM_04420 PF01609 Transposase DDE domain VM_04420 PF02281 Transposase Tn5 dimerisation domain VM_04420 PF14706 Transposase DNA-binding VM_04425 PF01475 Ferric uptake regulator family VM_04430 PF14539 Domain of unknown function (DUF4442) VM_04435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_04435 PF03466 LysR substrate binding domain VM_04440 PF03788 VM_04440 VM_04445 PF04172 VM_04445 VM_04450 PF00258 Flavodoxin VM_04455 PF10981 VM_04455 VM_04460 PF12697 Alpha/beta hydrolase family VM_04465 PF03925 SeqA protein VM_04465 PF17206 VM_04465 VM_04470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VM_04470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VM_04470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VM_04470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VM_04475 PF08907 VM_04475 VM_04480 PF01784 NIF3 (NGG1p interacting factor 3) VM_04485 PF00285 Citrate synthase VM_04490 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VM_04495 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VM_04500 PF00890 FAD binding domain VM_04500 PF02910 Fumarate reductase flavoprotein C-term VM_04505 PF13085 2Fe-2S iron-sulfur cluster binding domain VM_04505 PF13534 4Fe-4S dicluster domain VM_04510 PF00676 Dehydrogenase E1 component VM_04510 PF02779 Transketolase, pyrimidine binding domain VM_04510 PF16078 VM_04510 VM_04510 PF16870 VM_04510 VM_04515 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VM_04515 PF00364 Biotin-requiring enzyme VM_04515 PF02817 e3 binding domain VM_04520 PF00549 CoA-ligase VM_04520 PF08442 ATP-grasp domain VM_04525 PF00549 CoA-ligase VM_04525 PF02629 CoA binding domain VM_04530 PF00950 VM_04530 VM_04535 PF00005 ABC transporter VM_04540 PF01297 Periplasmic solute binding protein family VM_04545 PF12833 Helix-turn-helix domain VM_04550 PF04023 FeoA domain VM_04555 PF02421 Ferrous iron transport protein B VM_04555 PF07664 VM_04555 VM_04555 PF07670 Nucleoside recognition VM_04560 PF09012 FeoC like transcriptional regulator VM_04565 PF01609 Transposase DDE domain VM_04565 PF02281 Transposase Tn5 dimerisation domain VM_04565 PF14706 Transposase DNA-binding VM_04570 PF01230 HIT domain VM_04575 PF00750 tRNA synthetases class I (R) VM_04575 PF03485 Arginyl tRNA synthetase N terminal domain VM_04575 PF05746 DALR anticodon binding domain VM_04580 PF06185 YecM protein VM_04585 PF00675 Insulinase (Peptidase family M16) VM_04585 PF05193 Peptidase M16 inactive domain VM_04585 PF16187 VM_04585 VM_04590 PF00300 Histidine phosphatase superfamily (branch 1) VM_04595 PF00771 FHIPEP family VM_04600 PF00448 SRP54-type protein, GTPase domain VM_04605 PF10609 ParA/MinD ATPase like VM_04610 PF04539 Sigma-70 region 3 VM_04610 PF04542 Sigma-70 region 2 VM_04610 PF04545 Sigma-70, region 4 VM_04615 PF00072 Response regulator receiver domain VM_04620 PF04344 Chemotaxis phosphatase, CheZ VM_04625 PF01584 CheW-like domain VM_04625 PF01627 Hpt domain VM_04625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_04625 PF02895 Signal transducing histidine kinase, homodimeric domain VM_04630 PF00072 Response regulator receiver domain VM_04630 PF01339 CheB methylesterase VM_04635 PF13614 AAA domain VM_04640 PF01584 CheW-like domain VM_04645 PF01584 CheW-like domain VM_04650 PF10975 VM_04650 VM_04655 PF00005 ABC transporter VM_04660 PF03379 VM_04660 VM_04665 PF01578 VM_04665 VM_04670 PF04995 VM_04670 VM_04675 PF03100 CcmE VM_04680 PF01578 VM_04680 VM_04680 PF16327 VM_04680 VM_04685 PF08534 Redoxin VM_04690 PF03918 Cytochrome C biogenesis protein VM_04695 PF14559 Tetratricopeptide repeat VM_04700 PF04333 VM_04700 VM_04705 PF00106 short chain dehydrogenase VM_04710 PF11993 VM_04710 VM_04715 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VM_04715 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VM_04720 PF00462 Glutaredoxin VM_04725 PF01131 DNA topoisomerase VM_04725 PF01751 Toprim domain VM_04730 PF00850 Histone deacetylase domain VM_04735 PF12833 Helix-turn-helix domain VM_04745 PF00106 short chain dehydrogenase VM_04765 PF00884 Sulfatase VM_04765 PF11893 VM_04765 VM_04770 PF07208 Protein of unknown function (DUF1414) VM_04775 PF04245 VM_04775 VM_04780 PF01627 Hpt domain VM_04785 PF03553 VM_04785 VM_04790 PF01118 Semialdehyde dehydrogenase, NAD binding domain VM_04790 PF02774 Semialdehyde dehydrogenase, dimerisation domain VM_04795 PF00520 Ion transport protein VM_04800 PF01914 VM_04800 VM_04805 PF00171 Aldehyde dehydrogenase family VM_04805 PF00465 Iron-containing alcohol dehydrogenase VM_04815 PF00916 VM_04815 VM_04815 PF01740 STAS domain VM_04820 PF00575 S1 RNA binding domain VM_04820 PF10150 Ribonuclease E/G family VM_04830 PF00849 RNA pseudouridylate synthase VM_04830 PF01479 S4 domain VM_04835 PF02545 Maf-like protein VM_04840 PF02620 VM_04840 VM_04845 PF01783 Ribosomal L32p protein family VM_04850 PF02504 Fatty acid synthesis protein VM_04855 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VM_04855 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VM_04860 PF00698 Acyl transferase domain VM_04865 PF13561 Enoyl-(Acyl carrier protein) reductase VM_04870 PF00550 Phosphopantetheine attachment site VM_04875 PF00109 Beta-ketoacyl synthase, N-terminal domain VM_04875 PF02801 Beta-ketoacyl synthase, C-terminal domain VM_04880 PF01063 Aminotransferase class IV VM_04885 PF02618 YceG-like family VM_04890 PF02223 Thymidylate kinase VM_04895 PF09115 DNA polymerase III, delta subunit, C terminal VM_04895 PF13177 DNA polymerase III, delta subunit VM_04900 PF01026 TatD related DNase VM_04905 PF00367 phosphotransferase system, EIIB VM_04905 PF02378 Phosphotransferase system, EIIC VM_04915 PF00209 Sodium:neurotransmitter symporter family VM_04920 PF01389 OmpA-like transmembrane domain VM_04925 PF01734 Patatin-like phospholipase VM_04930 PF00224 Pyruvate kinase, barrel domain VM_04930 PF02887 Pyruvate kinase, alpha/beta domain VM_04935 PF00480 ROK family VM_04940 PF00072 Response regulator receiver domain VM_04940 PF01584 CheW-like domain VM_04945 PF03992 Antibiotic biosynthesis monooxygenase VM_04950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VM_04955 PF13467 Ribbon-helix-helix domain VM_04965 PF04187 Protein of unknown function, DUF399 VM_04970 PF13649 Methyltransferase domain VM_04975 PF11059 VM_04975 VM_04980 PF01263 Aldose 1-epimerase VM_04985 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VM_04985 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VM_04990 PF01641 SelR domain VM_04995 PF11207 VM_04995 VM_05000 PF07023 VM_05000 VM_05005 PF00710 Asparaginase VM_05010 PF01343 Peptidase family S49 VM_05015 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VM_05015 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_05020 PF00551 Formyl transferase VM_05020 PF01842 ACT domain VM_05030 PF13307 Helicase C-terminal domain VM_05035 PF00814 Glycoprotease family VM_05045 PF03843 VM_05045 VM_05050 PF00561 alpha/beta hydrolase fold VM_05055 PF00501 AMP-binding enzyme VM_05055 PF13193 AMP-binding enzyme C-terminal domain VM_05060 PF00570 HRDC domain VM_05060 PF01612 3'-5' exonuclease VM_05065 PF01432 Peptidase family M3 VM_05070 PF01694 Rhomboid family VM_05075 PF03942 VM_05075 VM_05080 PF01966 HD domain VM_05080 PF13286 Phosphohydrolase-associated domain VM_05085 PF13023 HD domain VM_05090 PF00155 Aminotransferase class I and II VM_05095 PF00425 chorismate binding enzyme VM_05100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VM_05100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VM_05100 PF16582 VM_05100 VM_05105 PF12697 Alpha/beta hydrolase family VM_05110 PF00378 Enoyl-CoA hydratase/isomerase family VM_05115 PF13378 Enolase C-terminal domain-like VM_05120 PF00501 AMP-binding enzyme VM_05125 PF03594 VM_05125 VM_05130 PF01381 Helix-turn-helix VM_05130 PF07883 Cupin domain VM_05135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_05140 PF01553 Acyltransferase VM_05140 PF07690 Major Facilitator Superfamily VM_05145 PF13305 WHG domain VM_05150 PF04280 Tim44-like domain VM_05150 PF07466 VM_05150 VM_05155 PF06844 Protein of unknown function (DUF1244) VM_05160 PF04170 NlpE N-terminal domain VM_05165 PF03776 Septum formation topological specificity factor MinE VM_05170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VM_05175 PF03775 Septum formation inhibitor MinC, C-terminal domain VM_05175 PF05209 Septum formation inhibitor MinC, N-terminal domain VM_05180 PF05166 YcgL domain VM_05185 PF13406 Transglycosylase SLT domain VM_05190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_05190 PF03466 LysR substrate binding domain VM_05195 PF01773 Na+ dependent nucleoside transporter N-terminus VM_05195 PF07662 Na+ dependent nucleoside transporter C-terminus VM_05195 PF07670 Nucleoside recognition VM_05200 PF00704 Glycosyl hydrolases family 18 VM_05210 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VM_05210 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VM_05220 PF10129 VM_05220 VM_05225 PF01810 VM_05225 VM_05230 PF01569 PAP2 superfamily VM_05240 PF13279 Thioesterase-like superfamily VM_05245 PF01553 Acyltransferase VM_05250 PF01148 Cytidylyltransferase family VM_05255 PF01066 CDP-alcohol phosphatidyltransferase VM_05260 PF00563 EAL domain VM_05260 PF00990 GGDEF domain VM_05275 PF02696 VM_05275 VM_05280 PF03480 Bacterial extracellular solute-binding protein, family 7 VM_05285 PF04290 VM_05285 VM_05290 PF06808 VM_05290 VM_05295 PF00072 Response regulator receiver domain VM_05295 PF00158 Sigma-54 interaction domain VM_05295 PF02954 Bacterial regulatory protein, Fis family VM_05300 PF00512 His Kinase A (phospho-acceptor) domain VM_05300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_05300 PF02743 Cache domain VM_05310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VM_05310 PF05697 Bacterial trigger factor protein (TF) VM_05310 PF05698 Bacterial trigger factor protein (TF) C-terminus VM_05315 PF00574 Clp protease VM_05320 PF06689 ClpX C4-type zinc finger VM_05320 PF07724 AAA domain (Cdc48 subfamily) VM_05320 PF10431 C-terminal, D2-small domain, of ClpB protein VM_05325 PF00004 ATPase family associated with various cellular activities (AAA) VM_05325 PF02190 ATP-dependent protease La (LON) domain VM_05325 PF05362 Lon protease (S16) C-terminal proteolytic domain VM_05330 PF00216 Bacterial DNA-binding protein VM_05335 PF13616 PPIC-type PPIASE domain VM_05335 PF13624 SurA N-terminal domain VM_05340 PF12836 Helix-hairpin-helix motif VM_05345 PF01797 Transposase IS200 like VM_05350 PF02224 Cytidylate kinase VM_05355 PF00575 S1 RNA binding domain VM_05360 PF00216 Bacterial DNA-binding protein VM_05365 PF06305 VM_05365 VM_05370 PF13176 Tetratricopeptide repeat VM_05370 PF13181 Tetratricopeptide repeat VM_05375 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VM_05380 PF00072 Response regulator receiver domain VM_05380 PF00512 His Kinase A (phospho-acceptor) domain VM_05380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_05385 PF07700 Heme NO binding VM_05390 PF02397 VM_05390 VM_05395 PF13641 Glycosyltransferase like family 2 VM_05400 PF00534 Glycosyl transferases group 1 VM_05400 PF13439 Glycosyltransferase Family 4 VM_05405 PF02706 Chain length determinant protein VM_05410 PF13692 Glycosyl transferases group 1 VM_05415 PF00132 Bacterial transferase hexapeptide (six repeats) VM_05420 PF04932 VM_05420 VM_05425 PF01943 VM_05425 VM_05430 PF00534 Glycosyl transferases group 1 VM_05435 PF00534 Glycosyl transferases group 1 VM_05435 PF13439 Glycosyltransferase Family 4 VM_05440 PF00534 Glycosyl transferases group 1 VM_05440 PF13579 Glycosyl transferase 4-like domain VM_05445 PF00072 Response regulator receiver domain VM_05445 PF00158 Sigma-54 interaction domain VM_05445 PF02954 Bacterial regulatory protein, Fis family VM_05450 PF01627 Hpt domain VM_05460 PF02563 Polysaccharide biosynthesis/export protein VM_05460 PF10531 SLBB domain VM_05465 PF00691 OmpA family VM_05470 PF01740 STAS domain VM_05475 PF03372 Endonuclease/Exonuclease/phosphatase family VM_05485 PF16130 VM_05485 VM_05490 PF00528 Binding-protein-dependent transport system inner membrane component VM_05495 PF00528 Binding-protein-dependent transport system inner membrane component VM_05500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_05505 PF00005 ABC transporter VM_05520 PF16313 VM_05520 VM_05525 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VM_05535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_05535 PF03466 LysR substrate binding domain VM_05540 PF13679 VM_05540 VM_05545 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VM_05545 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VM_05550 PF01037 AsnC family VM_05550 PF13412 Winged helix-turn-helix DNA-binding VM_05555 PF01580 FtsK/SpoIIIE family VM_05555 PF09397 Ftsk gamma domain VM_05555 PF13491 VM_05555 VM_05560 PF02600 Disulfide bond formation protein DsbB VM_05565 PF06450 VM_05565 VM_05570 PF00392 Bacterial regulatory proteins, gntR family VM_05570 PF07840 FadR C-terminal domain VM_05575 PF09002 Domain of unknown function (DUF1887) VM_05585 PF01230 HIT domain VM_05595 PF07233 Protein of unknown function (DUF1425) VM_05600 PF13036 Protein of unknown function (DUF3897) VM_05605 PF01633 Choline/ethanolamine kinase VM_05610 PF05728 Uncharacterised protein family (UPF0227) VM_05615 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_05620 PF13302 Acetyltransferase (GNAT) domain VM_05625 PF10972 VM_05625 VM_05630 PF00270 DEAD/DEAH box helicase VM_05630 PF00271 Helicase conserved C-terminal domain VM_05630 PF02559 CarD-like/TRCF domain VM_05630 PF03461 TRCF domain VM_05640 PF02687 VM_05640 VM_05640 PF12704 MacB-like periplasmic core domain VM_05645 PF00005 ABC transporter VM_05650 PF02687 VM_05650 VM_05650 PF12704 MacB-like periplasmic core domain VM_05655 PF09835 VM_05655 VM_05660 PF00753 Metallo-beta-lactamase superfamily VM_05660 PF03772 VM_05660 VM_05660 PF13567 VM_05660 VM_05665 PF00005 ABC transporter VM_05665 PF00664 ABC transporter transmembrane region VM_05670 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VM_05675 PF03966 Trm112p-like protein VM_05680 PF02348 Cytidylyltransferase VM_05685 PF01547 Bacterial extracellular solute-binding protein VM_05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_05695 PF00072 Response regulator receiver domain VM_05695 PF00486 Transcriptional regulatory protein, C terminal VM_05700 PF00367 phosphotransferase system, EIIB VM_05700 PF02378 Phosphotransferase system, EIIC VM_05705 PF04293 VM_05705 VM_05710 PF04285 VM_05710 VM_05715 PF06798 VM_05715 VM_05715 PF08298 PrkA AAA domain VM_05720 PF03887 YfbU domain VM_05725 PF01891 Cobalt uptake substrate-specific transmembrane region VM_05730 PF04055 Radical SAM superfamily VM_05730 PF13353 4Fe-4S single cluster domain VM_05735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_05740 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) VM_05745 PF01228 Glycine radical VM_05745 PF02901 Pyruvate formate lyase VM_05750 PF11840 VM_05750 VM_05755 PF00005 ABC transporter VM_05760 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_05765 PF00528 Binding-protein-dependent transport system inner membrane component VM_05770 PF00528 Binding-protein-dependent transport system inner membrane component VM_05775 PF03372 Endonuclease/Exonuclease/phosphatase family VM_05780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_05780 PF00672 HAMP domain VM_05785 PF10689 VM_05785 VM_05790 PF07445 Primosomal replication protein priB and priC VM_05795 PF01925 VM_05795 VM_05800 PF06733 DEAD_2 VM_05800 PF13307 Helicase C-terminal domain VM_05810 PF02810 SEC-C motif VM_05815 PF00563 EAL domain VM_05815 PF08668 HDOD domain VM_05820 PF00149 Calcineurin-like phosphoesterase VM_05825 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VM_05830 PF01406 tRNA synthetases class I (C) catalytic domain VM_05830 PF09190 DALR domain VM_05835 PF02075 Crossover junction endodeoxyribonuclease RuvC VM_05840 PF01330 RuvA N terminal domain VM_05840 PF07499 RuvA, C-terminal domain VM_05840 PF14520 Helix-hairpin-helix domain VM_05845 PF05491 Holliday junction DNA helicase ruvB C-terminus VM_05845 PF05496 Holliday junction DNA helicase ruvB N-terminus VM_05850 PF01654 VM_05850 VM_05855 PF02322 VM_05855 VM_05860 PF08173 VM_05860 VM_05865 PF09600 VM_05865 VM_05870 PF03061 Thioesterase superfamily VM_05875 PF01618 VM_05875 VM_05880 PF02472 Biopolymer transport protein ExbD/TolR VM_05885 PF06519 TolA C-terminal VM_05890 PF04052 TolB amino-terminal domain VM_05890 PF07676 WD40-like Beta Propeller Repeat VM_05895 PF00691 OmpA family VM_05900 PF13174 Tetratricopeptide repeat VM_05900 PF13432 Tetratricopeptide repeat VM_05900 PF16331 VM_05900 VM_05905 PF02445 Quinolinate synthetase A protein VM_05910 PF03695 Uncharacterised protein family (UPF0149) VM_05915 PF00072 Response regulator receiver domain VM_05915 PF00512 His Kinase A (phospho-acceptor) domain VM_05915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_05915 PF02743 Cache domain VM_05920 PF06610 VM_05920 VM_05925 PF01238 Phosphomannose isomerase type I VM_05930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_05930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_05930 PF02378 Phosphotransferase system, EIIC VM_05935 PF12833 Helix-turn-helix domain VM_05940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_05945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_05950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_05950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_05950 PF02378 Phosphotransferase system, EIIC VM_05955 PF00155 Aminotransferase class I and II VM_05955 PF00392 Bacterial regulatory proteins, gntR family VM_05960 PF00892 EamA-like transporter family VM_05965 PF07971 Glycosyl hydrolase family 92 VM_05970 PF07971 Glycosyl hydrolase family 92 VM_05975 PF07971 Glycosyl hydrolase family 92 VM_05980 PF07971 Glycosyl hydrolase family 92 VM_05985 PF07971 Glycosyl hydrolase family 92 VM_05990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_05995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_06005 PF00589 Phage integrase family VM_06010 PF00665 Integrase core domain VM_06010 PF13551 Winged helix-turn helix VM_06015 PF04607 Region found in RelA / SpoT proteins VM_06020 PF04245 VM_06020 VM_06025 PF14015 VM_06025 VM_06050 PF03895 YadA-like C-terminal region VM_06055 PF02195 ParB-like nuclease domain VM_06060 PF01507 Phosphoadenosine phosphosulfate reductase family VM_06060 PF11922 VM_06060 VM_06065 PF02368 Bacterial Ig-like domain (group 2) VM_06070 PF00884 Sulfatase VM_06075 PF01970 VM_06075 VM_06080 PF07331 VM_06080 VM_06085 PF03401 Tripartite tricarboxylate transporter family receptor VM_06090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_06090 PF03466 LysR substrate binding domain VM_06100 PF13229 Right handed beta helix region VM_06105 PF01055 Glycosyl hydrolases family 31 VM_06105 PF16338 VM_06105 VM_06105 PF17137 VM_06105 VM_06110 PF12833 Helix-turn-helix domain VM_06125 PF01478 Type IV leader peptidase family VM_06135 PF08666 SAF domain VM_06135 PF16976 VM_06135 VM_06150 PF13400 VM_06150 VM_06155 PF07811 VM_06155 VM_06160 PF07811 VM_06160 VM_06170 PF00437 Type II/IV secretion system protein VM_06175 PF00482 Type II secretion system (T2SS), protein F VM_06180 PF00482 Type II secretion system (T2SS), protein F VM_06185 PF07719 Tetratricopeptide repeat VM_06185 PF13181 Tetratricopeptide repeat VM_06185 PF13432 Tetratricopeptide repeat VM_06190 PF01204 Trehalase VM_06195 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VM_06195 PF02929 Beta galactosidase small chain VM_06205 PF01380 SIS domain VM_06205 PF01418 Helix-turn-helix domain, rpiR family VM_06210 PF03606 VM_06210 VM_06215 PF01546 Peptidase family M20/M25/M40 VM_06220 PF03575 Peptidase family S51 VM_06225 PF00563 EAL domain VM_06230 PF00873 AcrB/AcrD/AcrF family VM_06235 PF16576 VM_06235 VM_06240 PF00440 Bacterial regulatory proteins, tetR family VM_06240 PF14246 AefR-like transcriptional repressor, C-terminal region VM_06245 PF00171 Aldehyde dehydrogenase family VM_06250 PF07383 VM_06250 VM_06260 PF00440 Bacterial regulatory proteins, tetR family VM_06265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VM_06265 PF02770 Acyl-CoA dehydrogenase, middle domain VM_06265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VM_06265 PF09317 VM_06265 VM_06270 PF07055 Enoyl reductase FAD binding domain VM_06270 PF12241 Trans-2-enoyl-CoA reductase catalytic region VM_06270 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VM_06275 PF01176 Translation initiation factor 1A / IF-1 VM_06280 PF04376 VM_06280 VM_06280 PF04377 VM_06280 VM_06285 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VM_06295 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VM_06300 PF10692 Protein of unknown function (DUF2498) VM_06305 PF01131 DNA topoisomerase VM_06305 PF01396 VM_06305 VM_06305 PF01751 Toprim domain VM_06305 PF08272 Topoisomerase I zinc-ribbon-like VM_06315 PF00534 Glycosyl transferases group 1 VM_06315 PF08323 Starch synthase catalytic domain VM_06320 PF00561 alpha/beta hydrolase fold VM_06325 PF09413 Domain of unknown function (DUF2007) VM_06330 PF09335 VM_06330 VM_06340 PF00356 Bacterial regulatory proteins, lacI family VM_06340 PF13377 Periplasmic binding protein-like domain VM_06345 PF02613 Nitrate reductase delta subunit VM_06350 PF00072 Response regulator receiver domain VM_06350 PF00486 Transcriptional regulatory protein, C terminal VM_06355 PF02281 Transposase Tn5 dimerisation domain VM_06355 PF14706 Transposase DNA-binding VM_06360 PF02698 DUF218 domain VM_06365 PF08241 Methyltransferase domain VM_06370 PF03882 KicB killing factor VM_06370 PF17192 VM_06370 VM_06370 PF17193 VM_06370 VM_06375 PF04288 MukE-like family VM_06380 PF04310 MukB N-terminal VM_06380 PF13558 Putative exonuclease SbcCD, C subunit VM_06380 PF16330 VM_06380 VM_06385 PF01037 AsnC family VM_06385 PF13412 Winged helix-turn-helix DNA-binding VM_06390 PF01810 VM_06390 VM_06395 PF04055 Radical SAM superfamily VM_06395 PF08497 VM_06395 VM_06395 PF11842 VM_06395 VM_06400 PF00563 EAL domain VM_06400 PF13426 PAS domain VM_06405 PF00675 Insulinase (Peptidase family M16) VM_06405 PF05193 Peptidase M16 inactive domain VM_06415 PF14056 VM_06415 VM_06420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_06420 PF03466 LysR substrate binding domain VM_06425 PF01717 Cobalamin-independent synthase, Catalytic domain VM_06425 PF08267 Cobalamin-independent synthase, N-terminal domain VM_06430 PF16549 VM_06430 VM_06435 PF03795 YCII-related domain VM_06440 PF03061 Thioesterase superfamily VM_06445 PF04279 VM_06445 VM_06450 PF00563 EAL domain VM_06450 PF00990 GGDEF domain VM_06450 PF01590 GAF domain VM_06460 PF02698 DUF218 domain VM_06465 PF13460 NADH(P)-binding VM_06470 PF06146 VM_06470 VM_06475 PF01226 Formate/nitrite transporter VM_06485 PF06796 VM_06485 VM_06490 PF03264 NapC/NirT cytochrome c family, N-terminal region VM_06495 PF00384 Molybdopterin oxidoreductase VM_06495 PF01568 Molydopterin dinucleotide binding domain VM_06500 PF00665 Integrase core domain VM_06500 PF13551 Winged helix-turn helix VM_06505 PF02065 Melibiase VM_06510 PF03193 Protein of unknown function, DUF258 VM_06515 PF11449 VM_06515 VM_06520 PF01368 DHH family VM_06520 PF02833 DHHA2 domain VM_06525 PF11042 VM_06525 VM_06530 PF11150 VM_06530 VM_06535 PF00005 ABC transporter VM_06540 PF00005 ABC transporter VM_06540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_06545 PF00528 Binding-protein-dependent transport system inner membrane component VM_06545 PF12911 VM_06545 VM_06550 PF00528 Binding-protein-dependent transport system inner membrane component VM_06555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_06560 PF00158 Sigma-54 interaction domain VM_06560 PF02954 Bacterial regulatory protein, Fis family VM_06565 PF04012 VM_06565 VM_06570 PF06667 VM_06570 VM_06575 PF04024 VM_06575 VM_06580 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase VM_06580 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain VM_06585 PF03352 Methyladenine glycosylase VM_06590 PF01053 Cys/Met metabolism PLP-dependent enzyme VM_06595 PF13091 PLD-like domain VM_06595 PF13396 VM_06595 VM_06600 PF00209 Sodium:neurotransmitter symporter family VM_06605 PF00849 RNA pseudouridylate synthase VM_06610 PF01066 CDP-alcohol phosphatidyltransferase VM_06615 PF00005 ABC transporter VM_06620 PF00528 Binding-protein-dependent transport system inner membrane component VM_06625 PF13416 Bacterial extracellular solute-binding protein VM_06630 PF03724 META domain VM_06635 PF06945 VM_06635 VM_06645 PF12698 ABC-2 family transporter protein VM_06650 PF00005 ABC transporter VM_06655 PF13437 HlyD family secretion protein VM_06660 PF03222 Tryptophan/tyrosine permease family VM_06665 PF00892 EamA-like transporter family VM_06670 PF00571 CBS domain VM_06670 PF01769 Divalent cation transporter VM_06675 PF00072 Response regulator receiver domain VM_06675 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_06675 PF00512 His Kinase A (phospho-acceptor) domain VM_06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_06680 PF00072 Response regulator receiver domain VM_06680 PF00196 Bacterial regulatory proteins, luxR family VM_06680 PF00563 EAL domain VM_06685 PF00072 Response regulator receiver domain VM_06690 PF01752 Collagenase VM_06690 PF04151 Bacterial pre-peptidase C-terminal domain VM_06690 PF08453 Peptidase family M9 N-terminal VM_06695 PF06629 VM_06695 VM_06700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_06700 PF12793 VM_06700 VM_06710 PF13419 Haloacid dehalogenase-like hydrolase VM_06715 PF11301 VM_06715 VM_06720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_06720 PF00672 HAMP domain VM_06720 PF12729 VM_06720 VM_06730 PF00132 Bacterial transferase hexapeptide (six repeats) VM_06735 PF12614 VM_06735 VM_06740 PF00873 AcrB/AcrD/AcrF family VM_06745 PF16576 VM_06745 VM_06750 PF14312 VM_06750 VM_06755 PF01386 Ribosomal L25p family VM_06760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_06765 PF00072 Response regulator receiver domain VM_06765 PF00486 Transcriptional regulatory protein, C terminal VM_06775 PF00271 Helicase conserved C-terminal domain VM_06775 PF04851 Type III restriction enzyme, res subunit VM_06780 PF00849 RNA pseudouridylate synthase VM_06780 PF01479 S4 domain VM_06790 PF11140 VM_06790 VM_06795 PF11066 VM_06795 VM_06795 PF13460 NADH(P)-binding VM_06800 PF01554 MatE VM_06805 PF00005 ABC transporter VM_06810 PF02687 VM_06810 VM_06815 PF07143 Hydroxyneurosporene synthase (CrtC) VM_06815 PF17186 VM_06815 VM_06820 PF06965 Na+/H+ antiporter 1 VM_06825 PF01797 Transposase IS200 like VM_06830 PF00202 Aminotransferase class-III VM_06830 PF00282 Pyridoxal-dependent decarboxylase conserved domain VM_06835 PF03435 Saccharopine dehydrogenase VM_06835 PF16653 VM_06835 VM_06845 PF00691 OmpA family VM_06850 PF02321 Outer membrane efflux protein VM_06855 PF00092 von Willebrand factor type A domain VM_06855 PF00353 Hemolysin-type calcium-binding repeat (2 copies) VM_06855 PF08548 Peptidase M10 serralysin C terminal VM_06855 PF16184 VM_06855 VM_06860 PF01609 Transposase DDE domain VM_06860 PF02281 Transposase Tn5 dimerisation domain VM_06860 PF14706 Transposase DNA-binding VM_06865 PF07209 VM_06865 VM_06870 PF07690 Major Facilitator Superfamily VM_06875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_06875 PF03466 LysR substrate binding domain VM_06880 PF00462 Glutaredoxin VM_06885 PF01863 Protein of unknown function DUF45 VM_06890 PF05971 Protein of unknown function (DUF890) VM_06900 PF13424 Tetratricopeptide repeat VM_06905 PF04204 Homoserine O-succinyltransferase VM_06910 PF13671 AAA domain VM_06915 PF12698 ABC-2 family transporter protein VM_06920 PF12698 ABC-2 family transporter protein VM_06925 PF16576 VM_06925 VM_06930 PF02321 Outer membrane efflux protein VM_06940 PF00989 PAS fold VM_06940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_06940 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VM_06940 PF17203 VM_06940 VM_06945 PF00072 Response regulator receiver domain VM_06945 PF12431 VM_06945 VM_06955 PF00072 Response regulator receiver domain VM_06955 PF01584 CheW-like domain VM_06965 PF10881 VM_06965 VM_06970 PF00990 GGDEF domain VM_06985 PF07690 Major Facilitator Superfamily VM_06990 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VM_06990 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VM_06995 PF00288 GHMP kinases N terminal domain VM_06995 PF08544 GHMP kinases C terminal VM_06995 PF10509 Galactokinase galactose-binding signature VM_07000 PF01263 Aldose 1-epimerase VM_07005 PF01120 Alpha-L-fucosidase VM_07010 PF13322 VM_07010 VM_07010 PF13402 Peptidase M60-like family VM_07010 PF17291 VM_07010 VM_07015 PF04224 VM_07015 VM_07020 PF00199 Catalase VM_07020 PF06628 Catalase-related immune-responsive VM_07025 PF12796 Ankyrin repeats (3 copies) VM_07030 PF00080 Copper/zinc superoxide dismutase (SODC) VM_07035 PF04266 ASCH domain VM_07040 PF09900 VM_07040 VM_07045 PF04342 VM_07045 VM_07055 PF00206 Lyase VM_07055 PF10415 Fumarase C C-terminus VM_07065 PF01521 Iron-sulphur cluster biosynthesis VM_07070 PF01458 Uncharacterized protein family (UPF0051) VM_07075 PF00005 ABC transporter VM_07080 PF01458 Uncharacterized protein family (UPF0051) VM_07085 PF00266 Aminotransferase class-V VM_07090 PF02657 Fe-S metabolism associated domain VM_07095 PF00462 Glutaredoxin VM_07100 PF07972 NrdI Flavodoxin like VM_07105 PF00317 Ribonucleotide reductase, all-alpha domain VM_07105 PF02867 Ribonucleotide reductase, barrel domain VM_07105 PF08343 Ribonucleotide reductase N-terminal VM_07110 PF00268 Ribonucleotide reductase, small chain VM_07115 PF00005 ABC transporter VM_07120 PF02687 VM_07120 VM_07120 PF12704 MacB-like periplasmic core domain VM_07125 PF02687 VM_07125 VM_07125 PF12704 MacB-like periplasmic core domain VM_07130 PF02321 Outer membrane efflux protein VM_07135 PF16576 VM_07135 VM_07140 PF00753 Metallo-beta-lactamase superfamily VM_07145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_07145 PF03466 LysR substrate binding domain VM_07150 PF00141 Peroxidase VM_07155 PF00232 Glycosyl hydrolase family 1 VM_07160 PF00356 Bacterial regulatory proteins, lacI family VM_07160 PF13377 Periplasmic binding protein-like domain VM_07165 PF01042 Endoribonuclease L-PSP VM_07170 PF04074 Domain of unknown function (DUF386) VM_07175 PF03009 Glycerophosphoryl diester phosphodiesterase family VM_07180 PF00455 VM_07180 VM_07180 PF08220 DeoR-like helix-turn-helix domain VM_07185 PF00005 ABC transporter VM_07190 PF00528 Binding-protein-dependent transport system inner membrane component VM_07195 PF00528 Binding-protein-dependent transport system inner membrane component VM_07200 PF13416 Bacterial extracellular solute-binding protein VM_07210 PF11932 VM_07210 VM_07215 PF01618 VM_07215 VM_07220 PF01618 VM_07220 VM_07225 PF02472 Biopolymer transport protein ExbD/TolR VM_07230 PF03544 Gram-negative bacterial TonB protein C-terminal VM_07240 PF01068 ATP dependent DNA ligase domain VM_07240 PF14743 DNA ligase OB-like domain VM_07245 PF11279 VM_07245 VM_07250 PF01554 MatE VM_07255 PF14255 VM_07255 VM_07260 PF03881 Fructosamine kinase VM_07265 PF12290 VM_07265 VM_07270 PF00877 NlpC/P60 family VM_07275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_07280 PF04116 VM_07280 VM_07285 PF03942 VM_07285 VM_07290 PF00480 ROK family VM_07295 PF11173 VM_07295 VM_07300 PF00994 Probable molybdopterin binding domain VM_07300 PF03205 Molybdopterin guanine dinucleotide synthesis protein B VM_07300 PF03453 MoeA N-terminal region (domain I and II) VM_07300 PF03454 MoeA C-terminal region (domain IV) VM_07305 PF12804 MobA-like NTP transferase domain VM_07310 PF00005 ABC transporter VM_07315 PF00528 Binding-protein-dependent transport system inner membrane component VM_07320 PF12849 PBP superfamily domain VM_07325 PF00072 Response regulator receiver domain VM_07325 PF00158 Sigma-54 interaction domain VM_07325 PF02954 Bacterial regulatory protein, Fis family VM_07330 PF00512 His Kinase A (phospho-acceptor) domain VM_07330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_07330 PF17202 VM_07330 VM_07335 PF00005 ABC transporter VM_07335 PF12848 ABC transporter VM_07340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_07340 PF00672 HAMP domain VM_07345 PF02634 FdhD/NarQ family VM_07350 PF11749 VM_07350 VM_07355 PF11748 VM_07355 VM_07360 PF12838 4Fe-4S dicluster domain VM_07360 PF13187 4Fe-4S dicluster domain VM_07365 PF02613 Nitrate reductase delta subunit VM_07370 PF10518 TAT (twin-arginine translocation) pathway signal sequence VM_07375 PF00384 Molybdopterin oxidoreductase VM_07375 PF01568 Molydopterin dinucleotide binding domain VM_07375 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VM_07380 PF13247 4Fe-4S dicluster domain VM_07385 PF01292 Prokaryotic cytochrome b561 VM_07395 PF00909 Ammonium Transporter Family VM_07400 PF02146 Sir2 family VM_07405 PF04461 Protein of unknown function (DUF520) VM_07410 PF00793 DAHP synthetase I family VM_07415 PF14539 Domain of unknown function (DUF4442) VM_07425 PF13509 S1 domain VM_07430 PF01189 NOL1/NOP2/sun family VM_07430 PF13636 pre-rRNA processing and ribosome biogenesis VM_07430 PF17125 VM_07430 VM_07435 PF02470 VM_07435 VM_07440 PF04403 VM_07440 VM_07445 PF00005 ABC transporter VM_07445 PF00664 ABC transporter transmembrane region VM_07450 PF13185 GAF domain VM_07455 PF04352 ProQ/FINO family VM_07455 PF17516 VM_07455 VM_07460 PF00595 PDZ domain (Also known as DHR or GLGF) VM_07460 PF03572 Peptidase family S41 VM_07460 PF08180 VM_07460 VM_07460 PF11818 VM_07460 VM_07470 PF01433 Peptidase family M1 VM_07470 PF11940 Domain of unknown function (DUF3458) VM_07470 PF17432 VM_07470 VM_07475 PF11197 VM_07475 VM_07480 PF05088 VM_07480 VM_07485 PF01180 Dihydroorotate dehydrogenase VM_07490 PF07126 VM_07490 VM_07495 PF01170 Putative RNA methylase family UPF0020 VM_07495 PF02926 THUMP domain VM_07495 PF10672 S-adenosylmethionine-dependent methyltransferase VM_07500 PF05768 Glutaredoxin-like domain (DUF836) VM_07505 PF00005 ABC transporter VM_07505 PF12848 ABC transporter VM_07505 PF16326 VM_07505 VM_07510 PF11949 VM_07510 VM_07515 PF04957 Ribosome modulation factor VM_07520 PF07977 FabA-like domain VM_07525 PF05362 Lon protease (S16) C-terminal proteolytic domain VM_07525 PF13654 AAA domain VM_07530 PF06303 Organiser of macrodomain of Terminus of chromosome VM_07530 PF17414 VM_07530 VM_07535 PF12321 VM_07535 VM_07545 PF00072 Response regulator receiver domain VM_07545 PF00512 His Kinase A (phospho-acceptor) domain VM_07545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_07550 PF08495 VM_07550 VM_07550 PF10442 VM_07550 VM_07560 PF00115 Cytochrome C and Quinol oxidase polypeptide I VM_07565 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO VM_07570 PF05545 VM_07570 VM_07575 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VM_07575 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VM_07580 PF05751 VM_07580 VM_07585 PF00122 E1-E2 ATPase VM_07585 PF00403 Heavy-metal-associated domain VM_07585 PF00702 haloacid dehalogenase-like hydrolase VM_07585 PF12156 VM_07585 VM_07590 PF03597 VM_07590 VM_07595 PF13386 VM_07595 VM_07600 PF00027 Cyclic nucleotide-binding domain VM_07600 PF13545 Crp-like helix-turn-helix domain VM_07605 PF00582 Universal stress protein family VM_07610 PF01171 PP-loop family VM_07615 PF11205 VM_07615 VM_07620 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VM_07630 PF00005 ABC transporter VM_07630 PF08402 TOBE domain VM_07635 PF00528 Binding-protein-dependent transport system inner membrane component VM_07640 PF00528 Binding-protein-dependent transport system inner membrane component VM_07645 PF13416 Bacterial extracellular solute-binding protein VM_07650 PF13416 Bacterial extracellular solute-binding protein VM_07655 PF00171 Aldehyde dehydrogenase family VM_07660 PF00072 Response regulator receiver domain VM_07660 PF00196 Bacterial regulatory proteins, luxR family VM_07665 PF08495 VM_07665 VM_07665 PF10442 VM_07665 VM_07670 PF00072 Response regulator receiver domain VM_07670 PF00512 His Kinase A (phospho-acceptor) domain VM_07670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_07670 PF12860 VM_07670 VM_07675 PF00990 GGDEF domain VM_07690 PF01235 VM_07690 VM_07695 PF01810 VM_07695 VM_07700 PF11153 VM_07700 VM_07705 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) VM_07710 PF13503 VM_07710 VM_07715 PF05954 Phage late control gene D protein (GPD) VM_07720 PF05638 Protein of unknown function (DUF796) VM_07725 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VM_07730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VM_07730 PF08028 Acyl-CoA dehydrogenase, C-terminal domain VM_07735 PF02311 AraC-like ligand binding domain VM_07735 PF12833 Helix-turn-helix domain VM_07740 PF00171 Aldehyde dehydrogenase family VM_07745 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase VM_07750 PF03547 VM_07750 VM_07755 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase VM_07760 PF00171 Aldehyde dehydrogenase family VM_07765 PF01557 Fumarylacetoacetate (FAA) hydrolase family VM_07770 PF01557 Fumarylacetoacetate (FAA) hydrolase family VM_07775 PF03328 HpcH/HpaI aldolase/citrate lyase family VM_07785 PF03480 Bacterial extracellular solute-binding protein, family 7 VM_07790 PF04290 VM_07790 VM_07795 PF06808 VM_07795 VM_07800 PF01047 MarR family VM_07805 PF01613 Flavin reductase like domain VM_07810 PF11391 VM_07810 VM_07815 PF00171 Aldehyde dehydrogenase family VM_07820 PF01970 VM_07820 VM_07830 PF03401 Tripartite tricarboxylate transporter family receptor VM_07835 PF00582 Universal stress protein family VM_07840 PF01266 FAD dependent oxidoreductase VM_07845 PF01042 Endoribonuclease L-PSP VM_07850 PF02423 Ornithine cyclodeaminase/mu-crystallin family VM_07855 PF12833 Helix-turn-helix domain VM_07860 PF00270 DEAD/DEAH box helicase VM_07860 PF00271 Helicase conserved C-terminal domain VM_07865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_07865 PF08447 PAS fold VM_07865 PF08448 PAS fold VM_07870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_07870 PF00672 HAMP domain VM_07875 PF00893 Small Multidrug Resistance protein VM_07880 PF07690 Major Facilitator Superfamily VM_07885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_07885 PF03466 LysR substrate binding domain VM_07890 PF00012 Hsp70 protein VM_07895 PF01979 Amidohydrolase family VM_07900 PF10013 VM_07900 VM_07910 PF03994 VM_07910 VM_07915 PF06693 VM_07915 VM_07920 PF03738 Glutathionylspermidine synthase preATP-grasp VM_07925 PF13505 Outer membrane protein beta-barrel domain VM_07930 PF00270 DEAD/DEAH box helicase VM_07930 PF00271 Helicase conserved C-terminal domain VM_07930 PF04408 Helicase associated domain (HA2) VM_07930 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VM_07930 PF11898 VM_07930 VM_07945 PF05099 Tellurite resistance protein TerB VM_07955 PF00929 Exonuclease VM_07960 PF00990 GGDEF domain VM_07960 PF03924 CHASE domain VM_07965 PF10816 VM_07965 VM_07975 PF00012 Hsp70 protein VM_07975 PF12531 VM_07975 VM_07980 PF00990 GGDEF domain VM_07990 PF00990 GGDEF domain VM_07995 PF09084 NMT1/THI5 like VM_08005 PF00990 GGDEF domain VM_08005 PF13181 Tetratricopeptide repeat VM_08005 PF13424 Tetratricopeptide repeat VM_08010 PF06508 Queuosine biosynthesis protein QueC VM_08015 PF04055 Radical SAM superfamily VM_08015 PF13394 4Fe-4S single cluster domain VM_08020 PF08282 haloacid dehalogenase-like hydrolase VM_08025 PF10414 Sirohaem synthase dimerisation region VM_08025 PF13241 Putative NAD(P)-binding VM_08030 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_08035 PF00528 Binding-protein-dependent transport system inner membrane component VM_08040 PF00528 Binding-protein-dependent transport system inner membrane component VM_08045 PF00005 ABC transporter VM_08050 PF01027 Inhibitor of apoptosis-promoting Bax1 VM_08055 PF04358 DsrC like protein VM_08060 PF00708 Acylphosphatase VM_08065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_08070 PF10672 S-adenosylmethionine-dependent methyltransferase VM_08075 PF00990 GGDEF domain VM_08075 PF07494 Two component regulator propeller VM_08075 PF07495 Y_Y_Y domain VM_08080 PF08534 Redoxin VM_08085 PF00072 Response regulator receiver domain VM_08085 PF00512 His Kinase A (phospho-acceptor) domain VM_08085 PF01627 Hpt domain VM_08085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_08085 PF08448 PAS fold VM_08090 PF00072 Response regulator receiver domain VM_08090 PF13487 HD domain VM_08095 PF13417 Glutathione S-transferase, N-terminal domain VM_08095 PF14497 Glutathione S-transferase, C-terminal domain VM_08100 PF01557 Fumarylacetoacetate (FAA) hydrolase family VM_08105 PF04209 homogentisate 1,2-dioxygenase VM_08110 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VM_08110 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal VM_08115 PF01546 Peptidase family M20/M25/M40 VM_08115 PF07687 Peptidase dimerisation domain VM_08120 PF00293 NUDIX domain VM_08125 PF00583 Acetyltransferase (GNAT) family VM_08130 PF00501 AMP-binding enzyme VM_08130 PF13193 AMP-binding enzyme C-terminal domain VM_08130 PF16177 VM_08130 VM_08135 PF04303 PrpF protein VM_08140 PF00330 Aconitase family (aconitate hydratase) VM_08140 PF00694 Aconitase C-terminal domain VM_08145 PF00285 Citrate synthase VM_08150 PF13714 Phosphoenolpyruvate phosphomutase VM_08155 PF00392 Bacterial regulatory proteins, gntR family VM_08155 PF07729 FCD domain VM_08160 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_08160 PF13487 HD domain VM_08165 PF03401 Tripartite tricarboxylate transporter family receptor VM_08170 PF07331 VM_08170 VM_08175 PF01970 VM_08175 VM_08180 PF00990 GGDEF domain VM_08180 PF03924 CHASE domain VM_08185 PF02653 VM_08185 VM_08190 PF00005 ABC transporter VM_08195 PF13407 Periplasmic binding protein domain VM_08205 PF02579 Dinitrogenase iron-molybdenum cofactor VM_08210 PF04400 VM_08210 VM_08215 PF00912 Transglycosylase VM_08220 PF00072 Response regulator receiver domain VM_08220 PF00486 Transcriptional regulatory protein, C terminal VM_08225 PF00512 His Kinase A (phospho-acceptor) domain VM_08225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_08230 PF06629 VM_08230 VM_08235 PF04393 VM_08235 VM_08240 PF00072 Response regulator receiver domain VM_08245 PF00027 Cyclic nucleotide-binding domain VM_08245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_08250 PF00939 Sodium:sulfate symporter transmembrane region VM_08255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_08255 PF12729 VM_08255 VM_08260 PF00842 Alanine racemase, C-terminal domain VM_08260 PF01168 Alanine racemase, N-terminal domain VM_08265 PF00892 EamA-like transporter family VM_08270 PF01609 Transposase DDE domain VM_08270 PF02281 Transposase Tn5 dimerisation domain VM_08270 PF14706 Transposase DNA-binding VM_08275 PF11163 VM_08275 VM_08280 PF13023 HD domain VM_08285 PF13302 Acetyltransferase (GNAT) domain VM_08290 PF00158 Sigma-54 interaction domain VM_08290 PF00989 PAS fold VM_08295 PF05128 VM_08295 VM_08300 PF04317 VM_08300 VM_08310 PF05681 VM_08310 VM_08310 PF05683 Fumarase C-terminus VM_08315 PF00425 chorismate binding enzyme VM_08315 PF04715 Anthranilate synthase component I, N terminal region VM_08320 PF00293 NUDIX domain VM_08325 PF03222 Tryptophan/tyrosine permease family VM_08330 PF03313 VM_08330 VM_08330 PF03315 Serine dehydratase beta chain VM_08335 PF01242 6-pyruvoyl tetrahydropterin synthase VM_08340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_08345 PF00152 tRNA synthetases class II (D, K and N) VM_08345 PF01336 OB-fold nucleic acid binding domain VM_08350 PF08543 Phosphomethylpyrimidine kinase VM_08355 PF00132 Bacterial transferase hexapeptide (six repeats) VM_08360 PF01966 HD domain VM_08365 PF00155 Aminotransferase class I and II VM_08370 PF00027 Cyclic nucleotide-binding domain VM_08370 PF00571 CBS domain VM_08370 PF03445 VM_08370 VM_08370 PF10335 VM_08370 VM_08375 PF00929 Exonuclease VM_08380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_08380 PF00672 HAMP domain VM_08380 PF02743 Cache domain VM_08385 PF04349 Periplasmic glucan biosynthesis protein, MdoG VM_08390 PF13506 Glycosyl transferase family 21 VM_08395 PF00356 Bacterial regulatory proteins, lacI family VM_08395 PF13377 Periplasmic binding protein-like domain VM_08400 PF04794 YdjC-like protein VM_08405 PF02056 Family 4 glycosyl hydrolase VM_08405 PF11975 Family 4 glycosyl hydrolase C-terminal domain VM_08410 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VM_08415 PF02378 Phosphotransferase system, EIIC VM_08420 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_08425 PF01522 Polysaccharide deacetylase VM_08430 PF02028 BCCT family transporter VM_08435 PF01047 MarR family VM_08440 PF00072 Response regulator receiver domain VM_08440 PF00196 Bacterial regulatory proteins, luxR family VM_08445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_08445 PF07730 Histidine kinase VM_08445 PF17200 VM_08445 VM_08450 PF06808 VM_08450 VM_08455 PF04290 VM_08455 VM_08460 PF03480 Bacterial extracellular solute-binding protein, family 7 VM_08470 PF11201 VM_08470 VM_08475 PF00753 Metallo-beta-lactamase superfamily VM_08480 PF05951 VM_08480 VM_08485 PF01471 Putative peptidoglycan binding domain VM_08485 PF03734 L,D-transpeptidase catalytic domain VM_08490 PF07433 VM_08490 VM_08495 PF09375 Imelysin VM_08500 PF06537 VM_08500 VM_08505 PF09375 Imelysin VM_08510 PF01609 Transposase DDE domain VM_08510 PF02281 Transposase Tn5 dimerisation domain VM_08510 PF14706 Transposase DNA-binding VM_08515 PF00925 GTP cyclohydrolase II VM_08525 PF07690 Major Facilitator Superfamily VM_08530 PF12833 Helix-turn-helix domain VM_08535 PF00581 Rhodanese-like domain VM_08540 PF00313 'Cold-shock' DNA-binding domain VM_08550 PF03918 Cytochrome C biogenesis protein VM_08555 PF08534 Redoxin VM_08560 PF01578 VM_08560 VM_08560 PF16327 VM_08560 VM_08565 PF03916 VM_08565 VM_08570 PF13247 4Fe-4S dicluster domain VM_08575 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VM_08580 PF02335 Cytochrome c552 VM_08590 PF00521 DNA gyrase/topoisomerase IV, subunit A VM_08590 PF03989 DNA gyrase C-terminal domain, beta-propeller VM_08595 PF13489 Methyltransferase domain VM_08600 PF00317 Ribonucleotide reductase, all-alpha domain VM_08600 PF02867 Ribonucleotide reductase, barrel domain VM_08600 PF03477 ATP cone domain VM_08605 PF00268 Ribonucleotide reductase, small chain VM_08610 PF00111 2Fe-2S iron-sulfur cluster binding domain VM_08620 PF00994 Probable molybdopterin binding domain VM_08625 PF13084 VM_08625 VM_08630 PF13740 ACT domain VM_08635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_08635 PF00672 HAMP domain VM_08635 PF17200 VM_08635 VM_08640 PF11042 VM_08640 VM_08645 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VM_08650 PF00005 ABC transporter VM_08655 PF01032 FecCD transport family VM_08660 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VM_08665 PF00300 Histidine phosphatase superfamily (branch 1) VM_08670 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VM_08675 PF02654 VM_08675 VM_08680 PF02277 Phosphoribosyltransferase VM_08685 PF01641 SelR domain VM_08690 PF00375 Sodium:dicarboxylate symporter family VM_08695 PF00929 Exonuclease VM_08695 PF08411 Exonuclease C-terminal VM_08700 PF03788 VM_08700 VM_08705 PF04172 VM_08705 VM_08710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VM_08710 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VM_08715 PF03547 VM_08715 VM_08720 PF02222 ATP-grasp domain VM_08725 PF05724 Thiopurine S-methyltransferase (TPMT) VM_08730 PF04607 Region found in RelA / SpoT proteins VM_08740 PF00216 Bacterial DNA-binding protein VM_08745 PF01588 Putative tRNA binding domain VM_08745 PF03147 Ferredoxin-fold anticodon binding domain VM_08745 PF03483 B3/4 domain VM_08745 PF03484 tRNA synthetase B5 domain VM_08750 PF01409 tRNA synthetases class II core domain (F) VM_08750 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VM_08755 PF00583 Acetyltransferase (GNAT) family VM_08785 PF01066 CDP-alcohol phosphatidyltransferase VM_08790 PF01541 GIY-YIG catalytic domain VM_08790 PF02151 UvrB/uvrC motif VM_08790 PF08459 UvrC Helix-hairpin-helix N-terminal VM_08790 PF14520 Helix-hairpin-helix domain VM_08795 PF00072 Response regulator receiver domain VM_08795 PF00196 Bacterial regulatory proteins, luxR family VM_08800 PF00136 DNA polymerase family B VM_08800 PF03104 DNA polymerase family B, exonuclease domain VM_08805 PF00563 EAL domain VM_08805 PF02378 Phosphotransferase system, EIIC VM_08810 PF01909 Nucleotidyltransferase domain VM_08815 PF01132 Elongation factor P (EF-P) OB domain VM_08815 PF08207 Elongation factor P (EF-P) KOW-like domain VM_08815 PF09285 Elongation factor P, C-terminal VM_08820 PF04269 Protein of unknown function, DUF440 VM_08825 PF11383 VM_08825 VM_08830 PF00392 Bacterial regulatory proteins, gntR family VM_08830 PF07702 UTRA domain VM_08835 PF01979 Amidohydrolase family VM_08840 PF00491 Arginase family VM_08845 PF01175 Urocanase VM_08845 PF17391 VM_08845 VM_08845 PF17392 VM_08845 VM_08850 PF00221 Aromatic amino acid lyase VM_08855 PF12119 VM_08855 VM_08860 PF00089 Trypsin VM_08865 PF04191 Phospholipid methyltransferase VM_08870 PF01565 FAD binding domain VM_08870 PF02913 FAD linked oxidases, C-terminal domain VM_08870 PF13183 4Fe-4S dicluster domain VM_08875 PF11813 VM_08875 VM_08880 PF10979 VM_08880 VM_08885 PF00691 OmpA family VM_08885 PF13488 VM_08885 VM_08890 PF08238 Sel1 repeat VM_08905 PF01259 SAICAR synthetase VM_08915 PF00390 Malic enzyme, N-terminal domain VM_08915 PF03949 Malic enzyme, NAD binding domain VM_08920 PF11872 VM_08920 VM_08925 PF02698 DUF218 domain VM_08930 PF00990 GGDEF domain VM_08940 PF10014 2OG-Fe dioxygenase VM_08945 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_08950 PF00005 ABC transporter VM_08950 PF00664 ABC transporter transmembrane region VM_08955 PF00005 ABC transporter VM_08960 PF00849 RNA pseudouridylate synthase VM_08960 PF01479 S4 domain VM_08965 PF01300 Telomere recombination VM_08970 PF02811 PHP domain VM_08975 PF08056 VM_08975 VM_08980 PF00425 chorismate binding enzyme VM_08980 PF04715 Anthranilate synthase component I, N terminal region VM_08985 PF00117 Glutamine amidotransferase class-I VM_08990 PF00591 Glycosyl transferase family, a/b domain VM_08990 PF02885 Glycosyl transferase family, helical bundle domain VM_08995 PF00218 Indole-3-glycerol phosphate synthase VM_08995 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VM_09000 PF00291 Pyridoxal-phosphate dependent enzyme VM_09005 PF00290 Tryptophan synthase alpha chain VM_09010 PF00375 Sodium:dicarboxylate symporter family VM_09015 PF01797 Transposase IS200 like VM_09020 PF00265 Thymidine kinase VM_09025 PF00152 tRNA synthetases class II (D, K and N) VM_09025 PF01336 OB-fold nucleic acid binding domain VM_09025 PF02938 GAD domain VM_09030 PF01904 Protein of unknown function DUF72 VM_09035 PF13649 Methyltransferase domain VM_09040 PF08003 Protein of unknown function (DUF1698) VM_09045 PF05618 Putative ATP-dependant zinc protease VM_09050 PF14400 VM_09050 VM_09050 PF14402 VM_09050 VM_09055 PF14397 VM_09055 VM_09060 PF00266 Aminotransferase class-V VM_09065 PF06097 VM_09065 VM_09070 PF00027 Cyclic nucleotide-binding domain VM_09070 PF00512 His Kinase A (phospho-acceptor) domain VM_09070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_09075 PF00072 Response regulator receiver domain VM_09090 PF04993 TfoX N-terminal domain VM_09090 PF04994 TfoX C-terminal domain VM_09095 PF08668 HDOD domain VM_09100 PF03956 VM_09100 VM_09110 PF00282 Pyridoxal-dependent decarboxylase conserved domain VM_09115 PF01380 SIS domain VM_09115 PF01418 Helix-turn-helix domain, rpiR family VM_09120 PF00465 Iron-containing alcohol dehydrogenase VM_09130 PF00462 Glutaredoxin VM_09135 PF02080 TrkA-C domain VM_09135 PF06826 VM_09135 VM_09140 PF00004 ATPase family associated with various cellular activities (AAA) VM_09140 PF02861 Clp amino terminal domain VM_09140 PF07724 AAA domain (Cdc48 subfamily) VM_09140 PF10431 C-terminal, D2-small domain, of ClpB protein VM_09145 PF02617 ATP-dependent Clp protease adaptor protein ClpS VM_09150 PF00313 'Cold-shock' DNA-binding domain VM_09155 PF01797 Transposase IS200 like VM_09160 PF03971 Monomeric isocitrate dehydrogenase VM_09165 PF00849 RNA pseudouridylate synthase VM_09170 PF01502 Phosphoribosyl-AMP cyclohydrolase VM_09170 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VM_09175 PF00977 Histidine biosynthesis protein VM_09180 PF00977 Histidine biosynthesis protein VM_09185 PF00117 Glutamine amidotransferase class-I VM_09190 PF00475 Imidazoleglycerol-phosphate dehydratase VM_09190 PF08645 Polynucleotide kinase 3 phosphatase VM_09195 PF00155 Aminotransferase class I and II VM_09200 PF00815 Histidinol dehydrogenase VM_09205 PF01634 ATP phosphoribosyltransferase VM_09205 PF08029 HisG, C-terminal domain VM_09210 PF03553 VM_09210 VM_09215 PF00816 H-NS histone family VM_09220 PF00294 pfkB family carbohydrate kinase VM_09225 PF03054 tRNA methyl transferase VM_09230 PF04356 Protein of unknown function (DUF489) VM_09235 PF00206 Lyase VM_09235 PF08328 Adenylosuccinate lyase C-terminal VM_09240 PF16036 VM_09240 VM_09245 PF11086 VM_09245 VM_09250 PF02353 Mycolic acid cyclopropane synthetase VM_09255 PF07103 VM_09255 VM_09260 PF01593 Flavin containing amine oxidoreductase VM_09265 PF00106 short chain dehydrogenase VM_09270 PF12680 SnoaL-like domain VM_09275 PF01435 Peptidase family M48 VM_09285 PF13500 AAA domain VM_09290 PF08241 Methyltransferase domain VM_09295 PF00155 Aminotransferase class I and II VM_09300 PF04055 Radical SAM superfamily VM_09300 PF06968 Biotin and Thiamin Synthesis associated domain VM_09305 PF00202 Aminotransferase class-III VM_09310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VM_09310 PF02403 Seryl-tRNA synthetase N-terminal domain VM_09315 PF00004 ATPase family associated with various cellular activities (AAA) VM_09315 PF12002 MgsA AAA+ ATPase C terminal VM_09315 PF16193 VM_09315 VM_09320 PF03548 Outer membrane lipoprotein carrier protein LolA VM_09325 PF02810 SEC-C motif VM_09325 PF03695 Uncharacterised protein family (UPF0149) VM_09330 PF01207 Dihydrouridine synthase (Dus) VM_09335 PF00990 GGDEF domain VM_09340 PF00005 ABC transporter VM_09345 PF02653 VM_09345 VM_09350 PF04392 ABC transporter substrate binding protein VM_09355 PF09905 Uncharacterized conserved protein (DUF2132) VM_09360 PF04217 VM_09360 VM_09365 PF00871 Acetokinase family VM_09370 PF01515 Phosphate acetyl/butaryl transferase VM_09370 PF07085 DRTGG domain VM_09370 PF13500 AAA domain VM_09375 PF13409 Glutathione S-transferase, N-terminal domain VM_09375 PF13410 Glutathione S-transferase, C-terminal domain VM_09380 PF00005 ABC transporter VM_09380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_09385 PF00005 ABC transporter VM_09385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_09390 PF00528 Binding-protein-dependent transport system inner membrane component VM_09390 PF12911 VM_09390 VM_09395 PF00528 Binding-protein-dependent transport system inner membrane component VM_09400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_09405 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein VM_09410 PF00672 HAMP domain VM_09410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_09415 PF00072 Response regulator receiver domain VM_09415 PF13487 HD domain VM_09420 PF00072 Response regulator receiver domain VM_09420 PF00563 EAL domain VM_09425 PF00512 His Kinase A (phospho-acceptor) domain VM_09425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_09430 PF00512 His Kinase A (phospho-acceptor) domain VM_09430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_09430 PF08448 PAS fold VM_09435 PF04509 CheC-like family VM_09440 PF00072 Response regulator receiver domain VM_09445 PF00072 Response regulator receiver domain VM_09445 PF08668 HDOD domain VM_09450 PF01627 Hpt domain VM_09455 PF01300 Telomere recombination VM_09455 PF03481 Putative GTP-binding controlling metal-binding VM_09470 PF12833 Helix-turn-helix domain VM_09475 PF01161 Phosphatidylethanolamine-binding protein VM_09480 PF02517 CAAX protease self-immunity VM_09485 PF00704 Glycosyl hydrolases family 18 VM_09485 PF06483 VM_09485 VM_09485 PF14600 Cellulose-binding domain VM_09490 PF01116 Fructose-bisphosphate aldolase class-II VM_09495 PF01979 Amidohydrolase family VM_09500 PF03610 PTS system fructose IIA component VM_09505 PF03613 VM_09505 VM_09510 PF03609 VM_09510 VM_09515 PF03830 PTS system sorbose subfamily IIB component VM_09520 PF01380 SIS domain VM_09525 PF08013 Tagatose 6 phosphate kinase VM_09530 PF00455 VM_09530 VM_09530 PF08220 DeoR-like helix-turn-helix domain VM_09535 PF00455 VM_09535 VM_09535 PF08220 DeoR-like helix-turn-helix domain VM_09540 PF07690 Major Facilitator Superfamily VM_09545 PF00782 Dual specificity phosphatase, catalytic domain VM_09550 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VM_09550 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VM_09555 PF01022 Bacterial regulatory protein, arsR family VM_09560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VM_09565 PF00893 Small Multidrug Resistance protein VM_09570 PF00893 Small Multidrug Resistance protein VM_09575 PF01323 DSBA-like thioredoxin domain VM_09580 PF12802 MarR family VM_09590 PF07690 Major Facilitator Superfamily VM_09595 PF00005 ABC transporter VM_09600 PF01497 Periplasmic binding protein VM_09605 PF01032 FecCD transport family VM_09610 PF04183 IucA / IucC family VM_09610 PF06276 Ferric iron reductase FhuF-like transporter VM_09615 PF13523 Acetyltransferase (GNAT) domain VM_09620 PF04183 IucA / IucC family VM_09620 PF06276 Ferric iron reductase FhuF-like transporter VM_09625 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) VM_09630 PF00593 TonB dependent receptor VM_09630 PF07715 TonB-dependent Receptor Plug Domain VM_09635 PF00665 Integrase core domain VM_09635 PF13551 Winged helix-turn helix VM_09640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_09650 PF12833 Helix-turn-helix domain VM_09650 PF12852 Cupin VM_09665 PF13289 VM_09665 VM_09670 PF00817 impB/mucB/samB family VM_09670 PF11798 IMS family HHH motif VM_09670 PF11799 impB/mucB/samB family C-terminal domain VM_09670 PF13438 VM_09670 VM_09675 PF00717 Peptidase S24-like VM_09680 PF02281 Transposase Tn5 dimerisation domain VM_09685 PF13207 AAA domain VM_09690 PF04266 ASCH domain VM_09700 PF13250 VM_09700 VM_09700 PF13455 VM_09700 VM_09715 PF09618 CRISPR-associated protein (Cas_Csy4) VM_09720 PF09615 VM_09720 VM_09725 PF09614 VM_09725 VM_09730 PF06527 VM_09730 VM_09740 PF13304 AAA domain VM_09755 PF12844 Helix-turn-helix domain VM_09760 PF05621 VM_09760 VM_09765 PF00665 Integrase core domain VM_09765 PF09299 Mu transposase, C-terminal VM_09770 PF08722 TnsA endonuclease N terminal VM_09780 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_09780 PF00990 GGDEF domain VM_09790 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VM_09795 PF09619 Type III secretion system lipoprotein chaperone (YscW) VM_09800 PF13622 Thioesterase-like superfamily VM_09805 PF01037 AsnC family VM_09805 PF13412 Winged helix-turn-helix DNA-binding VM_09810 PF00291 Pyridoxal-phosphate dependent enzyme VM_09815 PF01343 Peptidase family S49 VM_09815 PF08496 VM_09815 VM_09820 PF00106 short chain dehydrogenase VM_09825 PF03692 VM_09825 VM_09830 PF03692 VM_09830 VM_09835 PF02132 RecR protein VM_09835 PF13662 Toprim domain VM_09840 PF02575 YbaB/EbfC DNA-binding family VM_09845 PF12168 VM_09845 VM_09845 PF12169 DNA polymerase III subunits gamma and tau domain III VM_09845 PF12170 DNA polymerase III tau subunit V interacting with alpha VM_09845 PF13177 DNA polymerase III, delta subunit VM_09850 PF00156 Phosphoribosyl transferase domain VM_09855 PF04304 VM_09855 VM_09865 PF00072 Response regulator receiver domain VM_09870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_09870 PF03466 LysR substrate binding domain VM_09875 PF00881 Nitroreductase family VM_09880 PF00378 Enoyl-CoA hydratase/isomerase family VM_09880 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VM_09880 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VM_09885 PF00108 Thiolase, N-terminal domain VM_09885 PF02803 Thiolase, C-terminal domain VM_09890 PF04542 Sigma-70 region 2 VM_09890 PF08281 Sigma-70, region 4 VM_09895 PF11859 VM_09895 VM_09900 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VM_09905 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VM_09910 PF01451 Low molecular weight phosphotyrosine protein phosphatase VM_09915 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VM_09915 PF12557 Cob(I)alamin adenosyltransferase N terminal VM_09920 PF05170 VM_09920 VM_09925 PF00485 Phosphoribulokinase / Uridine kinase family VM_09930 PF10609 ParA/MinD ATPase like VM_09935 PF01588 Putative tRNA binding domain VM_09935 PF09334 tRNA synthetases class I (M) VM_09945 PF01048 Phosphorylase superfamily VM_09950 PF00122 E1-E2 ATPase VM_09950 PF00403 Heavy-metal-associated domain VM_09950 PF00702 haloacid dehalogenase-like hydrolase VM_09955 PF00571 CBS domain VM_09960 PF00990 GGDEF domain VM_09965 PF02391 MoaE protein VM_09970 PF02597 ThiS family VM_09975 PF01967 MoaC family VM_09980 PF00994 Probable molybdopterin binding domain VM_09985 PF04055 Radical SAM superfamily VM_09985 PF06463 Molybdenum Cofactor Synthesis C VM_09985 PF13353 4Fe-4S single cluster domain VM_09990 PF01933 Uncharacterised protein family UPF0052 VM_09995 PF01627 Hpt domain VM_10000 PF00072 Response regulator receiver domain VM_10000 PF00158 Sigma-54 interaction domain VM_10000 PF02954 Bacterial regulatory protein, Fis family VM_10005 PF00271 Helicase conserved C-terminal domain VM_10005 PF02151 UvrB/uvrC motif VM_10005 PF04851 Type III restriction enzyme, res subunit VM_10005 PF12344 Ultra-violet resistance protein B VM_10015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_10015 PF03466 LysR substrate binding domain VM_10020 PF00884 Sulfatase VM_10020 PF14707 C-terminal region of aryl-sulfatase VM_10025 PF04055 Radical SAM superfamily VM_10025 PF13186 Iron-sulfur cluster-binding domain VM_10030 PF07726 ATPase family associated with various cellular activities (AAA) VM_10035 PF01882 VM_10035 VM_10040 PF14316 VM_10040 VM_10045 PF00092 von Willebrand factor type A domain VM_10055 PF13584 VM_10055 VM_10060 PF12710 haloacid dehalogenase-like hydrolase VM_10065 PF02508 VM_10065 VM_10070 PF04060 Putative Fe-S cluster VM_10070 PF14697 4Fe-4S dicluster domain VM_10075 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VM_10075 PF10531 SLBB domain VM_10075 PF12838 4Fe-4S dicluster domain VM_10075 PF13375 RnfC Barrel sandwich hybrid domain VM_10080 PF03116 VM_10080 VM_10085 PF04205 FMN-binding domain VM_10090 PF02508 VM_10090 VM_10095 PF00633 Helix-hairpin-helix motif VM_10095 PF00730 HhH-GPD superfamily base excision DNA repair protein VM_10095 PF10576 Iron-sulfur binding domain of endonuclease III VM_10100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VM_10105 PF01609 Transposase DDE domain VM_10105 PF02281 Transposase Tn5 dimerisation domain VM_10105 PF14706 Transposase DNA-binding VM_10110 PF10952 VM_10110 VM_10115 PF00691 OmpA family VM_10120 PF00929 Exonuclease VM_10125 PF03553 VM_10125 VM_10125 PF13726 VM_10125 VM_10130 PF13522 Glutamine amidotransferase domain VM_10135 PF02674 VM_10135 VM_10140 PF05036 Sporulation related domain VM_10145 PF02875 Mur ligase family, glutamate ligase domain VM_10145 PF08245 Mur ligase middle domain VM_10150 PF01039 Carboxyl transferase domain VM_10155 PF01416 tRNA pseudouridine synthase VM_10165 PF00749 tRNA synthetases class I (E and Q), catalytic domain VM_10165 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VM_10170 PF00367 phosphotransferase system, EIIB VM_10170 PF02378 Phosphotransferase system, EIIC VM_10175 PF01979 Amidohydrolase family VM_10180 PF00480 ROK family VM_10185 PF00999 Sodium/hydrogen exchanger family VM_10185 PF02254 TrkA-N domain VM_10190 PF00733 Asparagine synthase VM_10190 PF13537 Glutamine amidotransferase domain VM_10195 PF02357 Transcription termination factor nusG VM_10200 PF00854 POT family VM_10205 PF00762 Ferrochelatase VM_10210 PF00406 Adenylate kinase VM_10210 PF05191 Adenylate kinase, active site lid VM_10215 PF00183 Hsp90 protein VM_10215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_10220 PF00486 Transcriptional regulatory protein, C terminal VM_10225 PF17323 VM_10225 VM_10230 PF10262 Rdx family VM_10235 PF12850 Calcineurin-like phosphoesterase superfamily domain VM_10240 PF01370 NAD dependent epimerase/dehydratase family VM_10240 PF08338 Domain of unknown function (DUF1731) VM_10245 PF00106 short chain dehydrogenase VM_10250 PF00085 Thioredoxin VM_10250 PF14559 Tetratricopeptide repeat VM_10250 PF14561 Tetratricopeptide repeat VM_10255 PF01145 SPFH domain / Band 7 family VM_10255 PF16200 VM_10255 VM_10260 PF01957 NfeD-like C-terminal, partner-binding VM_10265 PF13411 MerR HTH family regulatory protein VM_10275 PF13609 Gram-negative porin VM_10280 PF00533 BRCA1 C Terminus (BRCT) domain VM_10280 PF01653 NAD-dependent DNA ligase adenylation domain VM_10280 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VM_10280 PF03120 NAD-dependent DNA ligase OB-fold domain VM_10280 PF12826 Helix-hairpin-helix motif VM_10280 PF14520 Helix-hairpin-helix domain VM_10285 PF04354 ZipA, C-terminal FtsZ-binding domain VM_10290 PF07264 Etoposide-induced protein 2 VM_10295 PF00291 Pyridoxal-phosphate dependent enzyme VM_10305 PF00381 PTS HPr component phosphorylation site VM_10310 PF00391 PEP-utilising enzyme, mobile domain VM_10310 PF02896 PEP-utilising enzyme, TIM barrel domain VM_10310 PF05524 PEP-utilising enzyme, N-terminal VM_10315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VM_10320 PF01494 FAD binding domain VM_10325 PF00919 Uncharacterized protein family UPF0004 VM_10325 PF01938 TRAM domain VM_10325 PF04055 Radical SAM superfamily VM_10330 PF02562 PhoH-like protein VM_10335 PF02130 Uncharacterized protein family UPF0054 VM_10340 PF00571 CBS domain VM_10340 PF03471 Transporter associated domain VM_10345 PF00795 Carbon-nitrogen hydrolase VM_10350 PF07295 VM_10350 VM_10355 PF00133 tRNA synthetases class I (I, L, M and V) VM_10355 PF08264 Anticodon-binding domain of tRNA VM_10355 PF13603 Leucyl-tRNA synthetase, Domain 2 VM_10360 PF04390 Lipopolysaccharide-assembly VM_10365 PF06144 DNA polymerase III, delta subunit VM_10365 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VM_10370 PF02410 Oligomerisation domain VM_10375 PF02590 Predicted SPOUT methyltransferase VM_10380 PF00905 Penicillin binding protein transpeptidase domain VM_10380 PF03717 Penicillin-binding Protein dimerisation domain VM_10385 PF01098 VM_10385 VM_10390 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel VM_10390 PF05036 Sporulation related domain VM_10395 PF00768 D-alanyl-D-alanine carboxypeptidase VM_10395 PF07943 Penicillin-binding protein 5, C-terminal domain VM_10400 PF04359 Protein of unknown function (DUF493) VM_10405 PF03099 Biotin/lipoate A/B protein ligase family VM_10410 PF04055 Radical SAM superfamily VM_10410 PF16881 VM_10410 VM_10420 PF00464 Serine hydroxymethyltransferase VM_10425 PF02588 VM_10425 VM_10440 PF02706 Chain length determinant protein VM_10440 PF13614 AAA domain VM_10440 PF13807 VM_10440 VM_10445 PF02563 Polysaccharide biosynthesis/export protein VM_10445 PF10531 SLBB domain VM_10450 PF10082 VM_10450 VM_10455 PF02397 VM_10455 VM_10455 PF13727 CoA-binding domain VM_10465 PF04932 VM_10465 VM_10470 PF16458 VM_10470 VM_10475 PF12708 Pectate lyase superfamily protein VM_10485 PF03808 VM_10485 VM_10495 PF00534 Glycosyl transferases group 1 VM_10500 PF00501 AMP-binding enzyme VM_10505 PF00132 Bacterial transferase hexapeptide (six repeats) VM_10515 PF13440 VM_10515 VM_10515 PF14667 Polysaccharide biosynthesis C-terminal domain VM_10520 PF00534 Glycosyl transferases group 1 VM_10520 PF13439 Glycosyltransferase Family 4 VM_10525 PF00132 Bacterial transferase hexapeptide (six repeats) VM_10530 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VM_10530 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VM_10530 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VM_10535 PF02350 UDP-N-acetylglucosamine 2-epimerase VM_10540 PF01451 Low molecular weight phosphotyrosine protein phosphatase VM_10545 PF00873 AcrB/AcrD/AcrF family VM_10550 PF16576 VM_10550 VM_10580 PF11059 VM_10580 VM_10585 PF00512 His Kinase A (phospho-acceptor) domain VM_10585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_10590 PF00072 Response regulator receiver domain VM_10590 PF00486 Transcriptional regulatory protein, C terminal VM_10595 PF00128 Alpha amylase, catalytic domain VM_10600 PF00367 phosphotransferase system, EIIB VM_10600 PF02378 Phosphotransferase system, EIIC VM_10605 PF00356 Bacterial regulatory proteins, lacI family VM_10605 PF13377 Periplasmic binding protein-like domain VM_10610 PF13242 HAD-hyrolase-like VM_10615 PF00005 ABC transporter VM_10615 PF09383 NIL domain VM_10620 PF00528 Binding-protein-dependent transport system inner membrane component VM_10625 PF03180 NLPA lipoprotein VM_10630 PF10071 VM_10630 VM_10635 PF07348 Syd protein (SUKH-2) VM_10640 PF14489 QueF-like protein VM_10640 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VM_10650 PF00990 GGDEF domain VM_10655 PF03641 Possible lysine decarboxylase VM_10655 PF11892 Domain of unknown function (DUF3412) VM_10655 PF14793 Domain of unknown function (DUF4478) VM_10660 PF01367 5'-3' exonuclease, C-terminal SAM fold VM_10660 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VM_10665 PF04241 VM_10665 VM_10670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_10670 PF03466 LysR substrate binding domain VM_10680 PF02568 Thiamine biosynthesis protein (ThiI) VM_10680 PF02926 THUMP domain VM_10685 PF00691 OmpA family VM_10685 PF13677 VM_10685 VM_10690 PF01618 VM_10690 VM_10695 PF02609 Exonuclease VII small subunit VM_10700 PF00348 Polyprenyl synthetase VM_10705 PF02779 Transketolase, pyrimidine binding domain VM_10705 PF02780 Transketolase, C-terminal domain VM_10705 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VM_10710 PF00849 RNA pseudouridylate synthase VM_10715 PF04287 tRNA pseudouridine synthase C VM_10720 PF12069 VM_10720 VM_10725 PF11743 VM_10725 VM_10730 PF13302 Acetyltransferase (GNAT) domain VM_10740 PF02639 VM_10740 VM_10745 PF03806 VM_10745 VM_10750 PF00444 Ribosomal protein L36 VM_10755 PF01197 Ribosomal protein L31 VM_10760 PF01980 Uncharacterised protein family UPF0066 VM_10765 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VM_10765 PF03129 Anticodon binding domain VM_10765 PF04073 Aminoacyl-tRNA editing domain VM_10770 PF04391 VM_10770 VM_10775 PF06786 VM_10775 VM_10780 PF14056 VM_10780 VM_10785 PF02769 AIR synthase related protein, C-terminal domain VM_10785 PF13507 CobB/CobQ-like glutamine amidotransferase domain VM_10795 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_10795 PF01464 Transglycosylase SLT domain VM_10805 PF14437 VM_10805 VM_10810 PF03806 VM_10810 VM_10820 PF07963 Prokaryotic N-terminal methylation motif VM_10835 PF07963 Prokaryotic N-terminal methylation motif VM_10835 PF12019 Type II transport protein GspH VM_10840 PF07963 Prokaryotic N-terminal methylation motif VM_10840 PF16732 VM_10840 VM_10845 PF00226 DnaJ domain VM_10845 PF00684 DnaJ central domain VM_10845 PF01556 DnaJ C terminal domain VM_10850 PF00012 Hsp70 protein VM_10855 PF01025 GrpE VM_10860 PF01513 ATP-NAD kinase VM_10865 PF02463 RecF/RecN/SMC N terminal domain VM_10870 PF04355 SmpA / OmlA family VM_10875 PF03658 RnfH family Ubiquitin VM_10880 PF03364 Polyketide cyclase / dehydrase and lipid transport VM_10885 PF01668 SmpB protein VM_10895 PF13356 Domain of unknown function (DUF4102) VM_10900 PF00717 Peptidase S24-like VM_10905 PF13693 Winged helix-turn-helix DNA-binding VM_10910 PF02316 Mu DNA-binding domain VM_10910 PF02914 Bacteriophage Mu transposase VM_10910 PF09039 Mu DNA binding, I gamma subdomain VM_10910 PF09299 Mu transposase, C-terminal VM_10915 PF09077 Mu B transposition protein, C terminal VM_10915 PF13401 AAA domain VM_10940 PF11363 VM_10940 VM_10965 PF12961 Domain of Unknown Function with PDB structure (DUF3850) VM_10995 PF06252 VM_10995 VM_11005 PF08765 Mor transcription activator family VM_11010 PF05838 Glycosyl hydrolase 108 VM_11010 PF09374 Predicted Peptidoglycan domain VM_11025 PF01258 Prokaryotic dksA/traR C4-type zinc finger VM_11030 PF10805 VM_11030 VM_11040 PF11985 VM_11040 VM_11045 PF03237 Terminase-like family VM_11050 PF06074 VM_11050 VM_11055 PF04233 VM_11055 VM_11065 PF16532 VM_11065 VM_11070 PF13472 GDSL-like Lipase/Acylhydrolase family VM_11075 PF10123 VM_11075 VM_11080 PF10124 VM_11080 VM_11090 PF07030 VM_11090 VM_11095 PF05069 VM_11095 VM_11105 PF10948 VM_11105 VM_11115 PF10618 VM_11115 VM_11120 PF10109 VM_11120 VM_11130 PF07157 VM_11130 VM_11135 PF05954 Phage late control gene D protein (GPD) VM_11140 PF06890 Bacteriophage Mu Gp45 protein VM_11145 PF07409 VM_11145 VM_11150 PF04865 VM_11150 VM_11155 PF10076 VM_11155 VM_11175 PF00665 Integrase core domain VM_11175 PF13551 Winged helix-turn helix VM_11180 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VM_11180 PF04851 Type III restriction enzyme, res subunit VM_11180 PF11867 VM_11180 VM_11185 PF01420 Type I restriction modification DNA specificity domain VM_11190 PF02384 N-6 DNA Methylase VM_11190 PF12161 HsdM N-terminal domain VM_11195 PF13086 AAA domain VM_11195 PF13087 AAA domain VM_11205 PF01593 Flavin containing amine oxidoreductase VM_11210 PF11953 Domain of unknown function (DUF3470) VM_11210 PF13187 4Fe-4S dicluster domain VM_11215 PF00588 SpoU rRNA Methylase family VM_11220 PF10000 ACT domain VM_11220 PF13840 ACT domain VM_11225 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase VM_11230 PF03802 VM_11230 VM_11235 PF04223 Citrate lyase, alpha subunit (CitF) VM_11240 PF03328 HpcH/HpaI aldolase/citrate lyase family VM_11245 PF06857 VM_11245 VM_11250 PF08218 Citrate lyase ligase C-terminal domain VM_11250 PF13673 Acetyltransferase (GNAT) domain VM_11255 PF03390 VM_11255 VM_11260 PF04277 VM_11260 VM_11265 PF00364 Biotin-requiring enzyme VM_11265 PF00682 HMGL-like VM_11265 PF02436 Conserved carboxylase domain VM_11270 PF03977 VM_11270 VM_11275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_11275 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VM_11275 PF17203 VM_11275 VM_11280 PF00072 Response regulator receiver domain VM_11280 PF12431 VM_11280 VM_11290 PF00563 EAL domain VM_11290 PF12792 VM_11290 VM_11295 PF08883 Dopa 4,5-dioxygenase family VM_11300 PF00805 Pentapeptide repeats (8 copies) VM_11300 PF07885 Ion channel VM_11305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_11305 PF03466 LysR substrate binding domain VM_11310 PF01266 FAD dependent oxidoreductase VM_11315 PF01235 VM_11315 VM_11320 PF00753 Metallo-beta-lactamase superfamily VM_11320 PF14863 Alkyl sulfatase dimerisation VM_11320 PF14864 Alkyl sulfatase C-terminal VM_11325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_11325 PF03466 LysR substrate binding domain VM_11330 PF01184 VM_11330 VM_11335 PF00182 Chitinase class I VM_11335 PF02839 Carbohydrate binding domain VM_11340 PF00117 Glutamine amidotransferase class-I VM_11340 PF00958 GMP synthase C terminal domain VM_11340 PF02540 NAD synthase VM_11345 PF00478 IMP dehydrogenase / GMP reductase domain VM_11345 PF00571 CBS domain VM_11350 PF02601 VM_11350 VM_11350 PF13742 VM_11350 VM_11355 PF07191 zinc-ribbons VM_11365 PF01926 50S ribosome-binding GTPase VM_11365 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VM_11370 PF13360 PQQ-like domain VM_11375 PF09976 Tetratricopeptide repeat VM_11380 PF03129 Anticodon binding domain VM_11380 PF13393 Histidyl-tRNA synthetase VM_11385 PF04551 GcpE protein VM_11390 PF13413 Helix-turn-helix domain VM_11390 PF13464 VM_11390 VM_11395 PF04055 Radical SAM superfamily VM_11400 PF00334 Nucleoside diphosphate kinase VM_11405 PF00883 Cytosol aminopeptidase family, catalytic domain VM_11405 PF12404 VM_11405 VM_11410 PF04384 Iron-sulphur cluster assembly VM_11415 PF00111 2Fe-2S iron-sulfur cluster binding domain VM_11420 PF00012 Hsp70 protein VM_11425 PF00226 DnaJ domain VM_11425 PF07743 HSCB C-terminal oligomerisation domain VM_11430 PF01521 Iron-sulphur cluster biosynthesis VM_11435 PF01592 NifU-like N terminal domain VM_11440 PF00266 Aminotransferase class-V VM_11445 PF02082 Transcriptional regulator VM_11450 PF00588 SpoU rRNA Methylase family VM_11455 PF00459 Inositol monophosphatase family VM_11460 PF02355 Protein export membrane protein VM_11460 PF07549 SecD/SecF GG Motif VM_11465 PF02355 Protein export membrane protein VM_11465 PF07549 SecD/SecF GG Motif VM_11465 PF13721 SecD export protein N-terminal TM region VM_11470 PF02699 Preprotein translocase subunit VM_11475 PF01702 Queuine tRNA-ribosyltransferase VM_11485 PF02547 Queuosine biosynthesis protein VM_11490 PF00571 CBS domain VM_11495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_11495 PF12729 VM_11495 VM_11500 PF00463 Isocitrate lyase family VM_11505 PF01274 Malate synthase VM_11510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_11510 PF03466 LysR substrate binding domain VM_11515 PF00578 AhpC/TSA family VM_11515 PF10417 C-terminal domain of 1-Cys peroxiredoxin VM_11520 PF03932 CutC family VM_11525 PF03976 Polyphosphate kinase 2 (PPK2) VM_11530 PF01895 PhoU domain VM_11535 PF00005 ABC transporter VM_11540 PF00528 Binding-protein-dependent transport system inner membrane component VM_11545 PF00528 Binding-protein-dependent transport system inner membrane component VM_11550 PF02503 Polyphosphate kinase middle domain VM_11550 PF13089 Polyphosphate kinase N-terminal domain VM_11550 PF13090 Polyphosphate kinase C-terminal domain VM_11555 PF02541 Ppx/GppA phosphatase family VM_11560 PF12849 PBP superfamily domain VM_11565 PF00512 His Kinase A (phospho-acceptor) domain VM_11565 PF00989 PAS fold VM_11565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_11565 PF11808 VM_11565 VM_11570 PF00072 Response regulator receiver domain VM_11570 PF00486 Transcriptional regulatory protein, C terminal VM_11575 PF04381 Putative exonuclease, RdgC VM_11580 PF01136 VM_11580 VM_11580 PF16325 VM_11580 VM_11585 PF12838 4Fe-4S dicluster domain VM_11590 PF05139 Erythromycin esterase VM_11595 PF00881 Nitroreductase family VM_11600 PF08921 Domain of unknown function (DUF1904) VM_11605 PF01738 Dienelactone hydrolase family VM_11640 PF00004 ATPase family associated with various cellular activities (AAA) VM_11640 PF02861 Clp amino terminal domain VM_11640 PF07724 AAA domain (Cdc48 subfamily) VM_11640 PF10431 C-terminal, D2-small domain, of ClpB protein VM_11645 PF02578 Multi-copper polyphenol oxidoreductase laccase VM_11650 PF00849 RNA pseudouridylate synthase VM_11650 PF01479 S4 domain VM_11655 PF13525 Outer membrane lipoprotein VM_11660 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VM_11665 PF00800 Prephenate dehydratase VM_11665 PF01817 Chorismate mutase type II VM_11670 PF13416 Bacterial extracellular solute-binding protein VM_11675 PF00563 EAL domain VM_11675 PF00990 GGDEF domain VM_11680 PF01931 Protein of unknown function DUF84 VM_11685 PF01371 Trp repressor protein VM_11690 PF01464 Transglycosylase SLT domain VM_11690 PF14718 Soluble lytic murein transglycosylase L domain VM_11695 PF00005 ABC transporter VM_11695 PF12848 ABC transporter VM_11700 PF07238 PilZ domain VM_11705 PF01817 Chorismate mutase type II VM_11705 PF02153 Prephenate dehydrogenase VM_11710 PF00793 DAHP synthetase I family VM_11715 PF06580 VM_11715 VM_11715 PF07694 5TMR of 5TMR-LYT VM_11715 PF13492 GAF domain VM_11720 PF00072 Response regulator receiver domain VM_11720 PF04397 LytTr DNA-binding domain VM_11725 PF00933 Glycosyl hydrolase family 3 N terminal domain VM_11730 PF03702 Uncharacterised protein family (UPF0075) VM_11735 PF13580 SIS domain VM_11740 PF00999 Sodium/hydrogen exchanger family VM_11740 PF02254 TrkA-N domain VM_11745 PF10973 VM_11745 VM_11750 PF02554 VM_11750 VM_11750 PF13722 VM_11750 VM_11755 PF02401 LytB protein VM_11760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VM_11765 PF01252 VM_11765 VM_11770 PF00133 tRNA synthetases class I (I, L, M and V) VM_11770 PF06827 Zinc finger found in FPG and IleRS VM_11770 PF08264 Anticodon-binding domain of tRNA VM_11775 PF01687 Riboflavin kinase VM_11775 PF06574 FAD synthetase VM_11780 PF03023 VM_11780 VM_11785 PF01649 Ribosomal protein S20 VM_11790 PF01022 Bacterial regulatory protein, arsR family VM_11795 PF01609 Transposase DDE domain VM_11795 PF02281 Transposase Tn5 dimerisation domain VM_11795 PF14706 Transposase DNA-binding VM_11800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_11800 PF03466 LysR substrate binding domain VM_11805 PF02690 VM_11805 VM_11810 PF00303 Thymidylate synthase VM_11815 PF01790 VM_11815 VM_11820 PF01925 VM_11820 VM_11825 PF00391 PEP-utilising enzyme, mobile domain VM_11825 PF01590 GAF domain VM_11825 PF02896 PEP-utilising enzyme, TIM barrel domain VM_11825 PF05524 PEP-utilising enzyme, N-terminal VM_11830 PF00293 NUDIX domain VM_11835 PF02976 DNA mismatch repair enzyme MutH VM_11840 PF00248 Aldo/keto reductase family VM_11855 PF00158 Sigma-54 interaction domain VM_11855 PF02954 Bacterial regulatory protein, Fis family VM_11860 PF00152 tRNA synthetases class II (D, K and N) VM_11860 PF01336 OB-fold nucleic acid binding domain VM_11865 PF00472 RF-1 domain VM_11865 PF03462 PCRF domain VM_11870 PF05525 VM_11870 VM_11880 PF00270 DEAD/DEAH box helicase VM_11880 PF00271 Helicase conserved C-terminal domain VM_11885 PF00009 Elongation factor Tu GTP binding domain VM_11885 PF03144 Elongation factor Tu domain 2 VM_11885 PF16658 VM_11885 VM_11890 PF00563 EAL domain VM_11890 PF00990 GGDEF domain VM_11895 PF00583 Acetyltransferase (GNAT) family VM_11900 PF03603 DNA polymerase III psi subunit VM_11905 PF13527 Acetyltransferase (GNAT) domain VM_11910 PF02036 SCP-2 sterol transfer family VM_11915 PF00563 EAL domain VM_11915 PF00990 GGDEF domain VM_11915 PF08448 PAS fold VM_11915 PF13188 PAS domain VM_11920 PF01136 VM_11920 VM_11925 PF01136 VM_11925 VM_11930 PF01554 MatE VM_11935 PF01047 MarR family VM_11940 PF01609 Transposase DDE domain VM_11940 PF02281 Transposase Tn5 dimerisation domain VM_11940 PF14706 Transposase DNA-binding VM_11950 PF00013 KH domain VM_11950 PF00575 S1 RNA binding domain VM_11950 PF01138 3' exoribonuclease family, domain 1 VM_11950 PF03725 3' exoribonuclease family, domain 2 VM_11950 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VM_11955 PF00312 Ribosomal protein S15 VM_11960 PF01509 TruB family pseudouridylate synthase (N terminal domain) VM_11960 PF09157 Pseudouridine synthase II TruB, C-terminal VM_11960 PF16198 VM_11960 VM_11965 PF02033 Ribosome-binding factor A VM_11970 PF00009 Elongation factor Tu GTP binding domain VM_11970 PF04760 Translation initiation factor IF-2, N-terminal region VM_11970 PF08364 VM_11970 VM_11970 PF11987 Translation-initiation factor 2 VM_11975 PF08529 NusA N-terminal domain VM_11975 PF13184 NusA-like KH domain VM_11975 PF14520 Helix-hairpin-helix domain VM_11980 PF02576 Uncharacterised BCR, YhbC family COG0779 VM_11980 PF17384 VM_11980 VM_11995 PF03840 Preprotein translocase SecG subunit VM_12005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VM_12005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VM_12005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VM_12005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VM_12010 PF00809 Pterin binding enzyme VM_12015 PF00004 ATPase family associated with various cellular activities (AAA) VM_12015 PF01434 Peptidase family M41 VM_12015 PF06480 FtsH Extracellular VM_12020 PF01728 FtsJ-like methyltransferase VM_12025 PF01985 CRS1 / YhbY (CRM) domain VM_12030 PF01272 Transcription elongation factor, GreA/GreB, C-term VM_12030 PF03449 Transcription elongation factor, N-terminal VM_12035 PF13609 Gram-negative porin VM_12040 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VM_12045 PF00579 tRNA synthetases class I (W and Y) VM_12050 PF01551 Peptidase family M23 VM_12050 PF08525 VM_12050 VM_12055 PF00873 AcrB/AcrD/AcrF family VM_12060 PF16576 VM_12060 VM_12065 PF01521 Iron-sulphur cluster biosynthesis VM_12075 PF00202 Aminotransferase class-III VM_12085 PF01594 VM_12085 VM_12090 PF05175 Methyltransferase small domain VM_12090 PF08468 Methyltransferase small domain N-terminal VM_12095 PF00072 Response regulator receiver domain VM_12095 PF00512 His Kinase A (phospho-acceptor) domain VM_12095 PF00672 HAMP domain VM_12095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_12095 PF13188 PAS domain VM_12100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_12105 PF00528 Binding-protein-dependent transport system inner membrane component VM_12110 PF00528 Binding-protein-dependent transport system inner membrane component VM_12110 PF12911 VM_12110 VM_12115 PF00005 ABC transporter VM_12115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_12120 PF00005 ABC transporter VM_12120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_12125 PF00759 Glycosyl hydrolase family 9 VM_12125 PF02927 N-terminal ig-like domain of cellulase VM_12130 PF01869 BadF/BadG/BcrA/BcrD ATPase family VM_12135 PF00728 Glycosyl hydrolase family 20, catalytic domain VM_12135 PF02838 Glycosyl hydrolase family 20, domain 2 VM_12140 PF06165 Glycosyltransferase family 36 VM_12140 PF17167 VM_12140 VM_12145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VM_12145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VM_12145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VM_12145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VM_12150 PF00005 ABC transporter VM_12150 PF08402 TOBE domain VM_12155 PF00528 Binding-protein-dependent transport system inner membrane component VM_12160 PF13343 Bacterial extracellular solute-binding protein VM_12165 PF00909 Ammonium Transporter Family VM_12170 PF00543 Nitrogen regulatory protein P-II VM_12175 PF06062 VM_12175 VM_12180 PF00330 Aconitase family (aconitate hydratase) VM_12180 PF06434 Aconitate hydratase 2 N-terminus VM_12180 PF11791 Aconitate B N-terminal domain VM_12185 PF01734 Patatin-like phospholipase VM_12185 PF07244 Surface antigen variable number repeat VM_12190 PF00905 Penicillin binding protein transpeptidase domain VM_12190 PF00912 Transglycosylase VM_12190 PF14814 Bifunctional transglycosylase second domain VM_12195 PF00270 DEAD/DEAH box helicase VM_12195 PF00271 Helicase conserved C-terminal domain VM_12195 PF04408 Helicase associated domain (HA2) VM_12195 PF08482 VM_12195 VM_12200 PF03749 Sugar fermentation stimulation protein VM_12205 PF01258 Prokaryotic dksA/traR C4-type zinc finger VM_12210 PF00749 tRNA synthetases class I (E and Q), catalytic domain VM_12215 PF01743 Poly A polymerase head domain VM_12215 PF12626 Polymerase A arginine-rich C-terminus VM_12215 PF12627 Probable RNA and SrmB- binding site of polymerase A VM_12220 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VM_12225 PF02548 Ketopantoate hydroxymethyltransferase VM_12230 PF02569 Pantoate-beta-alanine ligase VM_12235 PF01061 VM_12235 VM_12240 PF00005 ABC transporter VM_12245 PF00916 VM_12245 VM_12245 PF01740 STAS domain VM_12250 PF00484 Carbonic anhydrase VM_12255 PF00156 Phosphoribosyl transferase domain VM_12260 PF00440 Bacterial regulatory proteins, tetR family VM_12265 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VM_12270 PF04348 LppC putative lipoprotein VM_12275 PF02021 Uncharacterised protein family UPF0102 VM_12280 PF13580 SIS domain VM_12285 PF04972 BON domain VM_12290 PF04386 Stringent starvation protein B VM_12295 PF00043 Glutathione S-transferase, C-terminal domain VM_12295 PF13417 Glutathione S-transferase, N-terminal domain VM_12300 PF02167 Cytochrome C1 family VM_12305 PF00032 Cytochrome b(C-terminal)/b6/petD VM_12305 PF00033 Cytochrome b(N-terminal)/b6/petB VM_12310 PF00355 Rieske [2Fe-2S] domain VM_12310 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VM_12315 PF00380 Ribosomal protein S9/S16 VM_12320 PF00572 Ribosomal protein L13 VM_12330 PF03969 AFG1-like ATPase VM_12335 PF06295 VM_12335 VM_12340 PF00595 PDZ domain (Also known as DHR or GLGF) VM_12340 PF13180 PDZ domain VM_12340 PF13365 Trypsin-like peptidase domain VM_12345 PF13180 PDZ domain VM_12345 PF13365 Trypsin-like peptidase domain VM_12350 PF01245 Ribosomal protein L19 VM_12355 PF01746 tRNA (Guanine-1)-methyltransferase VM_12360 PF01782 RimM N-terminal domain VM_12360 PF05239 PRC-barrel domain VM_12365 PF00886 Ribosomal protein S16 VM_12370 PF00448 SRP54-type protein, GTPase domain VM_12370 PF02881 SRP54-type protein, helical bundle domain VM_12370 PF02978 Signal peptide binding domain VM_12375 PF01578 VM_12375 VM_12380 PF00571 CBS domain VM_12380 PF01595 VM_12380 VM_12380 PF03471 Transporter associated domain VM_12385 PF02664 S-Ribosylhomocysteinase (LuxS) VM_12390 PF04262 Glutamate-cysteine ligase VM_12395 PF00675 Insulinase (Peptidase family M16) VM_12395 PF05193 Peptidase M16 inactive domain VM_12400 PF09335 VM_12400 VM_12405 PF08240 Alcohol dehydrogenase GroES-like domain VM_12405 PF13602 Zinc-binding dehydrogenase VM_12410 PF03977 VM_12410 VM_12415 PF00364 Biotin-requiring enzyme VM_12415 PF00682 HMGL-like VM_12415 PF02436 Conserved carboxylase domain VM_12420 PF04277 VM_12420 VM_12465 PF02599 Global regulator protein family VM_12470 PF00696 Amino acid kinase family VM_12475 PF01411 tRNA synthetases class II (A) VM_12475 PF02272 DHHA1 domain VM_12475 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VM_12480 PF02631 RecX family VM_12485 PF00154 recA bacterial DNA recombination protein VM_12490 PF02464 Competence-damaged protein VM_12495 PF00005 ABC transporter VM_12495 PF12857 VM_12495 VM_12500 PF00528 Binding-protein-dependent transport system inner membrane component VM_12505 PF00528 Binding-protein-dependent transport system inner membrane component VM_12510 PF13531 Bacterial extracellular solute-binding protein VM_12515 PF00291 Pyridoxal-phosphate dependent enzyme VM_12520 PF00488 MutS domain V VM_12520 PF01624 MutS domain I VM_12520 PF05188 MutS domain II VM_12520 PF05190 MutS family domain IV VM_12520 PF05192 MutS domain III VM_12525 PF00140 Sigma-70 factor, region 1 VM_12525 PF04539 Sigma-70 region 3 VM_12525 PF04542 Sigma-70 region 2 VM_12525 PF04545 Sigma-70, region 4 VM_12530 PF01476 LysM domain VM_12530 PF01551 Peptidase family M23 VM_12535 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) VM_12540 PF01975 Survival protein SurE VM_12545 PF01142 tRNA pseudouridine synthase D (TruD) VM_12550 PF02542 YgbB family VM_12555 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VM_12560 PF04977 Septum formation initiator VM_12565 PF02673 VM_12565 VM_12570 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VM_12575 PF02152 Dihydroneopterin aldolase VM_12585 PF02660 VM_12585 VM_12590 PF12697 Alpha/beta hydrolase family VM_12595 PF00814 Glycoprotease family VM_12600 PF01165 Ribosomal protein S21 VM_12605 PF09424 Yqey-like protein VM_12610 PF01807 CHC2 zinc finger VM_12610 PF08275 DNA primase catalytic core, N-terminal domain VM_12610 PF08278 DNA primase DnaG DnaB-binding VM_12610 PF10410 DnaB-helicase binding domain of primase VM_12610 PF13155 Toprim-like VM_12615 PF00140 Sigma-70 factor, region 1 VM_12615 PF03979 Sigma-70 factor, region 1 VM_12615 PF04539 Sigma-70 region 3 VM_12615 PF04542 Sigma-70 region 2 VM_12615 PF04545 Sigma-70, region 4 VM_12615 PF04546 Sigma-70, non-essential region VM_12625 PF00589 Phage integrase family VM_12625 PF13356 Domain of unknown function (DUF4102) VM_12625 PF14659 Phage integrase, N-terminal SAM-like domain VM_12630 PF04607 Region found in RelA / SpoT proteins VM_12635 PF13274 VM_12635 VM_12645 PF13730 VM_12645 VM_12650 PF11726 VM_12650 VM_12660 PF01926 50S ribosome-binding GTPase VM_12665 PF05930 Prophage CP4-57 regulatory protein (AlpA) VM_12670 PF13280 VM_12670 VM_12680 PF06803 VM_12680 VM_12685 PF10980 Protein of unknown function (DUF2787) VM_12690 PF10980 Protein of unknown function (DUF2787) VM_12695 PF04002 RadC-like JAB domain VM_12715 PF00030 Beta/Gamma crystallin VM_12725 PF00069 Protein kinase domain VM_12730 PF06744 VM_12730 VM_12730 PF06761 VM_12730 VM_12730 PF14331 VM_12730 VM_12735 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) VM_12740 PF05936 VM_12740 VM_12745 PF12790 Type VI secretion lipoprotein VM_12750 PF00498 FHA domain VM_12755 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_12760 PF04392 ABC transporter substrate binding protein VM_12765 PF07690 Major Facilitator Superfamily VM_12770 PF07478 D-ala D-ala ligase C-terminus VM_12775 PF00004 ATPase family associated with various cellular activities (AAA) VM_12775 PF07724 AAA domain (Cdc48 subfamily) VM_12775 PF10431 C-terminal, D2-small domain, of ClpB protein VM_12780 PF06996 VM_12780 VM_12785 PF05947 VM_12785 VM_12790 PF04965 Gene 25-like lysozyme VM_12795 PF05943 VM_12795 VM_12800 PF05943 VM_12800 VM_12805 PF05591 VM_12805 VM_12810 PF05638 Protein of unknown function (DUF796) VM_12815 PF06812 VM_12815 VM_12825 PF05954 Phage late control gene D protein (GPD) VM_12835 PF05488 PAAR motif VM_12840 PF01965 DJ-1/PfpI family VM_12840 PF12833 Helix-turn-helix domain VM_12860 PF00589 Phage integrase family VM_12860 PF13356 Domain of unknown function (DUF4102) VM_12870 PF08808 VM_12870 VM_12890 PF00476 DNA polymerase family A VM_12915 PF13280 VM_12915 VM_12925 PF01553 Acyltransferase VM_12925 PF13444 Acetyltransferase (GNAT) domain VM_12930 PF03480 Bacterial extracellular solute-binding protein, family 7 VM_12935 PF01380 SIS domain VM_12935 PF13522 Glutamine amidotransferase domain VM_12940 PF00455 VM_12940 VM_12940 PF08220 DeoR-like helix-turn-helix domain VM_12945 PF00224 Pyruvate kinase, barrel domain VM_12945 PF02887 Pyruvate kinase, alpha/beta domain VM_12950 PF04402 Protein of unknown function (DUF541) VM_12955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_12955 PF03466 LysR substrate binding domain VM_12960 PF01810 VM_12960 VM_12965 PF00924 Mechanosensitive ion channel VM_12965 PF05552 Conserved TM helix VM_12970 PF01116 Fructose-bisphosphate aldolase class-II VM_12975 PF00162 Phosphoglycerate kinase VM_12980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VM_12980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VM_12985 PF00593 TonB dependent receptor VM_12985 PF07715 TonB-dependent Receptor Plug Domain VM_12990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_12990 PF03466 LysR substrate binding domain VM_12995 PF00456 Transketolase, thiamine diphosphate binding domain VM_12995 PF02779 Transketolase, pyrimidine binding domain VM_12995 PF02780 Transketolase, C-terminal domain VM_13005 PF00438 S-adenosylmethionine synthetase, N-terminal domain VM_13005 PF02772 S-adenosylmethionine synthetase, central domain VM_13005 PF02773 S-adenosylmethionine synthetase, C-terminal domain VM_13010 PF10263 VM_13010 VM_13010 PF17283 VM_13010 VM_13015 PF04231 Endonuclease I VM_13020 PF04452 RNA methyltransferase VM_13025 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VM_13025 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VM_13030 PF02622 Uncharacterized ACR, COG1678 VM_13035 PF03652 Uncharacterised protein family (UPF0081) VM_13040 PF00579 tRNA synthetases class I (W and Y) VM_13040 PF01479 S4 domain VM_13045 PF00196 Bacterial regulatory proteins, luxR family VM_13050 PF00437 Type II/IV secretion system protein VM_13055 PF00437 Type II/IV secretion system protein VM_13060 PF01168 Alanine racemase, N-terminal domain VM_13065 PF03807 NADP oxidoreductase coenzyme F420-dependent VM_13065 PF14748 Pyrroline-5-carboxylate reductase dimerisation VM_13070 PF02325 VM_13070 VM_13075 PF02594 Uncharacterised ACR, YggU family COG1872 VM_13080 PF14467 Domain of unknown function (DUF4426) VM_13085 PF01725 Ham1 family VM_13090 PF04055 Radical SAM superfamily VM_13090 PF06969 HemN C-terminal domain VM_13100 PF04960 Glutaminase VM_13105 PF02390 Putative methyltransferase VM_13110 PF00730 HhH-GPD superfamily base excision DNA repair protein VM_13110 PF14815 NUDIX domain VM_13115 PF04362 Bacterial Fe(2+) trafficking VM_13120 PF01464 Transglycosylase SLT domain VM_13120 PF11873 Domain of unknown function (DUF3393) VM_13145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_13145 PF17200 VM_13145 VM_13175 PF00226 DnaJ domain VM_13175 PF05099 Tellurite resistance protein TerB VM_13180 PF03968 OstA-like protein VM_13180 PF04453 Organic solvent tolerance protein VM_13185 PF00639 PPIC-type PPIASE domain VM_13185 PF09312 SurA N-terminal domain VM_13185 PF13616 PPIC-type PPIASE domain VM_13190 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VM_13195 PF00398 Ribosomal RNA adenine dimethylase VM_13200 PF04379 Protein of unknown function (DUF525) VM_13205 PF00149 Calcineurin-like phosphoesterase VM_13210 PF00186 Dihydrofolate reductase VM_13215 PF12821 VM_13215 VM_13220 PF06738 VM_13220 VM_13225 PF01018 GTP1/OBG VM_13225 PF01926 50S ribosome-binding GTPase VM_13230 PF01016 Ribosomal L27 protein VM_13235 PF00829 Ribosomal prokaryotic L21 protein VM_13240 PF00348 Polyprenyl synthetase VM_13245 PF13520 Amino acid permease VM_13250 PF00056 lactate/malate dehydrogenase, NAD binding domain VM_13250 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VM_13255 PF01316 Arginine repressor, DNA binding domain VM_13255 PF02863 Arginine repressor, C-terminal domain VM_13260 PF16868 VM_13260 VM_13265 PF06808 VM_13265 VM_13265 PF11874 VM_13265 VM_13270 PF00582 Universal stress protein family VM_13275 PF09834 VM_13275 VM_13285 PF10282 Lactonase, 7-bladed beta-propeller VM_13290 PF00728 Glycosyl hydrolase family 20, catalytic domain VM_13290 PF02838 Glycosyl hydrolase family 20, domain 2 VM_13295 PF00474 Sodium:solute symporter family VM_13300 PF01042 Endoribonuclease L-PSP VM_13305 PF07969 Amidohydrolase family VM_13310 PF01168 Alanine racemase, N-terminal domain VM_13310 PF14031 Putative serine dehydratase domain VM_13315 PF01380 SIS domain VM_13315 PF01418 Helix-turn-helix domain, rpiR family VM_13330 PF07804 HipA-like C-terminal domain VM_13330 PF13657 HipA N-terminal domain VM_13340 PF01381 Helix-turn-helix VM_13355 PF04851 Type III restriction enzyme, res subunit VM_13355 PF13307 Helicase C-terminal domain VM_13360 PF00665 Integrase core domain VM_13360 PF13551 Winged helix-turn helix VM_13390 PF00665 Integrase core domain VM_13390 PF13551 Winged helix-turn helix VM_13400 PF06877 Regulator of ribonuclease activity B VM_13405 PF02274 Amidinotransferase VM_13410 PF00111 2Fe-2S iron-sulfur cluster binding domain VM_13410 PF00175 Oxidoreductase NAD-binding domain VM_13410 PF00970 Oxidoreductase FAD-binding domain VM_13415 PF03063 Prismane/CO dehydrogenase family VM_13420 PF01523 Putative modulator of DNA gyrase VM_13425 PF00795 Carbon-nitrogen hydrolase VM_13430 PF13116 VM_13430 VM_13430 PF13502 VM_13430 VM_13435 PF00575 S1 RNA binding domain VM_13435 PF10150 Ribonuclease E/G family VM_13440 PF02545 Maf-like protein VM_13445 PF04093 VM_13445 VM_13450 PF04085 rod shape-determining protein MreC VM_13455 PF06723 MreB/Mbl protein VM_13470 PF07963 Prokaryotic N-terminal methylation motif VM_13475 PF07963 Prokaryotic N-terminal methylation motif VM_13480 PF07963 Prokaryotic N-terminal methylation motif VM_13485 PF07963 Prokaryotic N-terminal methylation motif VM_13490 PF07963 Prokaryotic N-terminal methylation motif VM_13500 PF00482 Type II secretion system (T2SS), protein F VM_13505 PF00437 Type II/IV secretion system protein VM_13505 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VM_13510 PF14559 Tetratricopeptide repeat VM_13515 PF13401 AAA domain VM_13520 PF00263 VM_13520 VM_13520 PF07655 VM_13520 VM_13530 PF04612 Type II secretion system (T2SS), protein M VM_13540 PF00563 EAL domain VM_13540 PF00990 GGDEF domain VM_13540 PF17157 VM_13540 VM_13545 PF00436 Single-strand binding protein family VM_13550 PF00196 Bacterial regulatory proteins, luxR family VM_13555 PF00483 Nucleotidyl transferase VM_13560 PF00005 ABC transporter VM_13565 PF04932 VM_13565 VM_13565 PF11846 VM_13565 VM_13565 PF15864 VM_13565 VM_13570 PF00266 Aminotransferase class-V VM_13575 PF00696 Amino acid kinase family VM_13580 PF00809 Pterin binding enzyme VM_13580 PF02310 B12 binding domain VM_13580 PF02574 Homocysteine S-methyltransferase VM_13580 PF02607 B12 binding domain VM_13580 PF02965 Vitamin B12 dependent methionine synthase, activation domain VM_13585 PF00999 Sodium/hydrogen exchanger family VM_13655 PF01507 Phosphoadenosine phosphosulfate reductase family VM_13660 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VM_13660 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VM_13665 PF00175 Oxidoreductase NAD-binding domain VM_13665 PF00258 Flavodoxin VM_13665 PF00667 FAD binding domain VM_13680 PF13505 Outer membrane protein beta-barrel domain VM_13685 PF09583 VM_13685 VM_13690 PF01207 Dihydrouridine synthase (Dus) VM_13695 PF01475 Ferric uptake regulator family VM_13700 PF13690 Chemotaxis phosphatase CheX VM_13705 PF00342 Phosphoglucose isomerase VM_13710 PF01894 Uncharacterised protein family UPF0047 VM_13715 PF00842 Alanine racemase, C-terminal domain VM_13715 PF01168 Alanine racemase, N-terminal domain VM_13720 PF00772 DnaB-like helicase N terminal domain VM_13720 PF03796 DnaB-like helicase C terminal domain VM_13725 PF04338 Protein of unknown function, DUF481 VM_13730 PF01281 Ribosomal protein L9, N-terminal domain VM_13730 PF03948 Ribosomal protein L9, C-terminal domain VM_13735 PF01084 Ribosomal protein S18 VM_13740 PF00436 Single-strand binding protein family VM_13745 PF01250 Ribosomal protein S6 VM_13750 PF00210 Ferritin-like domain VM_13755 PF04324 BFD-like [2Fe-2S] binding domain VM_13760 PF00009 Elongation factor Tu GTP binding domain VM_13760 PF03143 Elongation factor Tu C-terminal domain VM_13760 PF03144 Elongation factor Tu domain 2 VM_13765 PF00009 Elongation factor Tu GTP binding domain VM_13765 PF00679 Elongation factor G C-terminus VM_13765 PF03144 Elongation factor Tu domain 2 VM_13765 PF03764 Elongation factor G, domain IV VM_13765 PF14492 Elongation Factor G, domain II VM_13770 PF00177 Ribosomal protein S7p/S5e VM_13775 PF00164 Ribosomal protein S12/S23 VM_13780 PF04077 DsrH like protein VM_13785 PF02635 DsrE/DsrF-like family VM_13790 PF02635 DsrE/DsrF-like family VM_13795 PF08348 VM_13795 VM_13795 PF13309 VM_13795 VM_13800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VM_13800 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VM_13805 PF00400 WD domain, G-beta repeat VM_13810 PF04102 SlyX VM_13815 PF09838 VM_13815 VM_13820 PF01145 SPFH domain / Band 7 family VM_13825 PF01145 SPFH domain / Band 7 family VM_13825 PF12221 VM_13825 VM_13830 PF01926 50S ribosome-binding GTPase VM_13830 PF13167 VM_13830 VM_13830 PF16360 VM_13830 VM_13835 PF17209 VM_13835 VM_13840 PF01715 IPP transferase VM_13845 PF01119 DNA mismatch repair protein, C-terminal domain VM_13845 PF08676 MutL C terminal dimerisation domain VM_13845 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_13850 PF01476 LysM domain VM_13850 PF01520 N-acetylmuramoyl-L-alanine amidase VM_13850 PF11741 AMIN domain VM_13855 PF02367 Uncharacterised P-loop hydrolase UPF0079 VM_13860 PF08331 VM_13860 VM_13860 PF13484 VM_13860 VM_13910 PF00929 Exonuclease VM_13915 PF03193 Protein of unknown function, DUF258 VM_13920 PF02666 VM_13920 VM_13925 PF00939 Sodium:sulfate symporter transmembrane region VM_13930 PF00892 EamA-like transporter family VM_13935 PF01676 Metalloenzyme superfamily VM_13935 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VM_13940 PF01551 Peptidase family M23 VM_13950 PF00440 Bacterial regulatory proteins, tetR family VM_13950 PF13972 Bacterial transcriptional repressor VM_13955 PF01208 Uroporphyrinogen decarboxylase (URO-D) VM_13960 PF00293 NUDIX domain VM_13960 PF09297 NADH pyrophosphatase zinc ribbon domain VM_13965 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VM_13970 PF00623 RNA polymerase Rpb1, domain 2 VM_13970 PF04983 RNA polymerase Rpb1, domain 3 VM_13970 PF04997 RNA polymerase Rpb1, domain 1 VM_13970 PF04998 RNA polymerase Rpb1, domain 5 VM_13970 PF05000 RNA polymerase Rpb1, domain 4 VM_13975 PF00562 RNA polymerase Rpb2, domain 6 VM_13975 PF04560 RNA polymerase Rpb2, domain 7 VM_13975 PF04561 RNA polymerase Rpb2, domain 2 VM_13975 PF04563 RNA polymerase beta subunit VM_13975 PF04565 RNA polymerase Rpb2, domain 3 VM_13975 PF10385 RNA polymerase beta subunit external 1 domain VM_13980 PF00542 Ribosomal protein L7/L12 C-terminal domain VM_13980 PF16320 VM_13980 VM_13985 PF00466 Ribosomal protein L10 VM_13990 PF00687 Ribosomal protein L1p/L10e family VM_13995 PF00298 Ribosomal protein L11, RNA binding domain VM_13995 PF03946 Ribosomal protein L11, N-terminal domain VM_14000 PF00467 KOW motif VM_14000 PF02357 Transcription termination factor nusG VM_14005 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VM_14010 PF00009 Elongation factor Tu GTP binding domain VM_14010 PF03143 Elongation factor Tu C-terminal domain VM_14010 PF03144 Elongation factor Tu domain 2 VM_14035 PF00485 Phosphoribulokinase / Uridine kinase family VM_14040 PF02237 Biotin protein ligase C terminal domain VM_14040 PF03099 Biotin/lipoate A/B protein ligase family VM_14040 PF08279 HTH domain VM_14045 PF01565 FAD binding domain VM_14045 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VM_14050 PF13673 Acetyltransferase (GNAT) domain VM_14060 PF13091 PLD-like domain VM_14090 PF00175 Oxidoreductase NAD-binding domain VM_14090 PF00970 Oxidoreductase FAD-binding domain VM_14095 PF00111 2Fe-2S iron-sulfur cluster binding domain VM_14100 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VM_14110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VM_14110 PF07497 Rho termination factor, RNA-binding domain VM_14110 PF07498 Rho termination factor, N-terminal domain VM_14115 PF00085 Thioredoxin VM_14120 PF00270 DEAD/DEAH box helicase VM_14120 PF00271 Helicase conserved C-terminal domain VM_14125 PF02541 Ppx/GppA phosphatase family VM_14130 PF00072 Response regulator receiver domain VM_14130 PF00512 His Kinase A (phospho-acceptor) domain VM_14130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_14130 PF12860 VM_14130 VM_14135 PF12832 MFS_1 like family VM_14145 PF00027 Cyclic nucleotide-binding domain VM_14145 PF03445 VM_14145 VM_14145 PF10335 VM_14145 VM_14150 PF00929 Exonuclease VM_14155 PF00501 AMP-binding enzyme VM_14155 PF13193 AMP-binding enzyme C-terminal domain VM_14155 PF16177 VM_14155 VM_14160 PF01220 Dehydroquinase class II VM_14165 PF00364 Biotin-requiring enzyme VM_14170 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain VM_14170 PF02785 Biotin carboxylase C-terminal domain VM_14170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VM_14175 PF06325 Ribosomal protein L11 methyltransferase (PrmA) VM_14180 PF01207 Dihydrouridine synthase (Dus) VM_14185 PF02954 Bacterial regulatory protein, Fis family VM_14190 PF00356 Bacterial regulatory proteins, lacI family VM_14190 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VM_14195 PF00920 Dehydratase family VM_14200 PF01202 Shikimate kinase VM_14205 PF02447 VM_14205 VM_14210 PF01081 KDPG and KHG aldolase VM_14215 PF00593 TonB dependent receptor VM_14215 PF07715 TonB-dependent Receptor Plug Domain VM_14220 PF16357 VM_14220 VM_14225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_14225 PF00672 HAMP domain VM_14225 PF17200 VM_14225 VM_14230 PF01276 Orn/Lys/Arg decarboxylase, major domain VM_14230 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VM_14230 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VM_14235 PF13520 Amino acid permease VM_14240 PF00486 Transcriptional regulatory protein, C terminal VM_14245 PF00376 MerR family regulatory protein VM_14245 PF09278 MerR, DNA binding VM_14250 PF01808 AICARFT/IMPCHase bienzyme VM_14250 PF02142 MGS-like domain VM_14255 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VM_14255 PF02843 Phosphoribosylglycinamide synthetase, C domain VM_14255 PF02844 Phosphoribosylglycinamide synthetase, N domain VM_14260 PF07356 VM_14260 VM_14265 PF00216 Bacterial DNA-binding protein VM_14270 PF00571 CBS domain VM_14270 PF01595 VM_14270 VM_14275 PF04222 Protein of unknown function (DUF416) VM_14280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VM_14285 PF03167 Uracil DNA glycosylase superfamily VM_14290 PF00924 Mechanosensitive ion channel VM_14295 PF00753 Metallo-beta-lactamase superfamily VM_14295 PF07521 RNA-metabolising metallo-beta-lactamase VM_14295 PF10996 Beta-Casp domain VM_14300 PF02719 Polysaccharide biosynthesis protein VM_14300 PF13727 CoA-binding domain VM_14305 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VM_14310 PF00132 Bacterial transferase hexapeptide (six repeats) VM_14315 PF02397 VM_14315 VM_14320 PF13692 Glycosyl transferases group 1 VM_14325 PF13522 Glutamine amidotransferase domain VM_14330 PF13439 Glycosyltransferase Family 4 VM_14345 PF13440 VM_14345 VM_14350 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VM_14355 PF00132 Bacterial transferase hexapeptide (six repeats) VM_14360 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VM_14360 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VM_14360 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VM_14365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VM_14365 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VM_14370 PF02706 Chain length determinant protein VM_14375 PF01370 NAD dependent epimerase/dehydratase family VM_14380 PF01522 Polysaccharide deacetylase VM_14380 PF13439 Glycosyltransferase Family 4 VM_14385 PF00132 Bacterial transferase hexapeptide (six repeats) VM_14390 PF04932 VM_14390 VM_14395 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VM_14400 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VM_14405 PF04488 Glycosyltransferase sugar-binding region containing DXD motif VM_14410 PF00534 Glycosyl transferases group 1 VM_14410 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VM_14415 PF08282 haloacid dehalogenase-like hydrolase VM_14430 PF07507 VM_14430 VM_14435 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family VM_14440 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VM_14445 PF00535 Glycosyl transferase family 2 VM_14450 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VM_14455 PF01467 Cytidylyltransferase VM_14460 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VM_14460 PF06827 Zinc finger found in FPG and IleRS VM_14460 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VM_14470 PF00471 Ribosomal protein L33 VM_14475 PF00830 Ribosomal L28 family VM_14480 PF04002 RadC-like JAB domain VM_14485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_14485 PF00672 HAMP domain VM_14485 PF17200 VM_14485 VM_14490 PF02441 Flavoprotein VM_14490 PF04127 DNA / pantothenate metabolism flavoprotein VM_14495 PF00440 Bacterial regulatory proteins, tetR family VM_14500 PF03279 VM_14500 VM_14505 PF03279 VM_14505 VM_14510 PF00156 Phosphoribosyl transferase domain VM_14515 PF01138 3' exoribonuclease family, domain 1 VM_14515 PF03725 3' exoribonuclease family, domain 2 VM_14520 PF03755 VM_14520 VM_14520 PF08340 VM_14520 VM_14525 PF03350 VM_14525 VM_14530 PF00367 phosphotransferase system, EIIB VM_14530 PF02378 Phosphotransferase system, EIIC VM_14535 PF01380 SIS domain VM_14545 PF01380 SIS domain VM_14545 PF01418 Helix-turn-helix domain, rpiR family VM_14550 PF01032 FecCD transport family VM_14555 PF01497 Periplasmic binding protein VM_14560 PF00005 ABC transporter VM_14565 PF00593 TonB dependent receptor VM_14565 PF07715 TonB-dependent Receptor Plug Domain VM_14570 PF01243 Pyridoxamine 5'-phosphate oxidase VM_14575 PF12305 VM_14575 VM_14580 PF00270 DEAD/DEAH box helicase VM_14580 PF00271 Helicase conserved C-terminal domain VM_14580 PF00570 HRDC domain VM_14580 PF09382 RQC domain VM_14580 PF16124 VM_14580 VM_14585 PF00892 EamA-like transporter family VM_14590 PF01019 Gamma-glutamyltranspeptidase VM_14595 PF02311 AraC-like ligand binding domain VM_14595 PF12833 Helix-turn-helix domain VM_14600 PF01810 VM_14600 VM_14610 PF00580 UvrD/REP helicase N-terminal domain VM_14610 PF13361 UvrD-like helicase C-terminal domain VM_14615 PF01432 Peptidase family M3 VM_14620 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ VM_14625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VM_14625 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_14635 PF00528 Binding-protein-dependent transport system inner membrane component VM_14635 PF12911 VM_14635 VM_14640 PF00528 Binding-protein-dependent transport system inner membrane component VM_14645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_14650 PF00005 ABC transporter VM_14650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_14685 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VM_14690 PF00580 UvrD/REP helicase N-terminal domain VM_14690 PF13361 UvrD-like helicase C-terminal domain VM_14695 PF00440 Bacterial regulatory proteins, tetR family VM_14700 PF16576 VM_14700 VM_14705 PF00873 AcrB/AcrD/AcrF family VM_14710 PF04380 VM_14710 VM_14715 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VM_14715 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain VM_14720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_14720 PF03466 LysR substrate binding domain VM_14790 PF12724 Flavodoxin domain VM_14795 PF02386 Cation transport protein VM_14800 PF01205 Uncharacterized protein family UPF0029 VM_14800 PF09186 Domain of unknown function (DUF1949) VM_14805 PF00378 Enoyl-CoA hydratase/isomerase family VM_14805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VM_14805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VM_14810 PF00108 Thiolase, N-terminal domain VM_14810 PF02803 Thiolase, C-terminal domain VM_14815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_14815 PF03466 LysR substrate binding domain VM_14820 PF07690 Major Facilitator Superfamily VM_14825 PF00132 Bacterial transferase hexapeptide (six repeats) VM_14825 PF12804 MobA-like NTP transferase domain VM_14830 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VM_14830 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VM_14835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VM_14835 PF02874 ATP synthase alpha/beta family, beta-barrel domain VM_14840 PF00231 ATP synthase VM_14845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VM_14845 PF00306 ATP synthase alpha/beta chain, C terminal domain VM_14845 PF02874 ATP synthase alpha/beta family, beta-barrel domain VM_14850 PF00213 ATP synthase delta (OSCP) subunit VM_14855 PF00430 ATP synthase B/B' CF(0) VM_14860 PF00137 ATP synthase subunit C VM_14865 PF00119 ATP synthase A chain VM_14870 PF03899 VM_14870 VM_14875 PF02195 ParB-like nuclease domain VM_14880 PF13614 AAA domain VM_14885 PF02527 rRNA small subunit methyltransferase G VM_14890 PF01134 Glucose inhibited division protein A VM_14890 PF13932 GidA associated domain 3 VM_14895 PF00258 Flavodoxin VM_14900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_14900 PF03466 LysR substrate binding domain VM_14905 PF01965 DJ-1/PfpI family VM_14910 PF07045 Protein of unknown function (DUF1330) VM_14915 PF00171 Aldehyde dehydrogenase family VM_14920 PF14280 VM_14920 VM_14925 PF00239 Resolvase, N terminal domain VM_14925 PF02796 Helix-turn-helix domain of resolvase VM_14930 PF07669 Eco57I restriction-modification methylase VM_14935 PF06616 BsuBI/PstI restriction endonuclease C-terminus VM_14940 PF11398 Protein of unknown function (DUF2813) VM_14940 PF13304 AAA domain VM_14945 PF13245 Part of AAA domain VM_14945 PF13361 UvrD-like helicase C-terminal domain VM_14955 PF12835 Integrase VM_14995 PF06122 VM_14995 VM_15000 PF07916 VM_15000 VM_15020 PF05280 Flagellar transcriptional activator (FlhC) VM_15025 PF06986 VM_15025 VM_15030 PF03090 VM_15030 VM_15030 PF08708 Primase C terminal 1 (PriCT-1) VM_15035 PF12728 Helix-turn-helix domain VM_15040 PF00589 Phage integrase family VM_15040 PF13102 Phage integrase SAM-like domain VM_15040 PF17293 VM_15040 VM_15045 PF01926 50S ribosome-binding GTPase VM_15045 PF10396 GTP-binding protein TrmE N-terminus VM_15045 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE VM_15050 PF02096 60Kd inner membrane protein VM_15050 PF14849 YidC periplasmic domain VM_15055 PF01809 VM_15055 VM_15060 PF00825 Ribonuclease P VM_15065 PF00468 Ribosomal protein L34 VM_15070 PF00005 ABC transporter VM_15075 PF00528 Binding-protein-dependent transport system inner membrane component VM_15080 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_15090 PF00293 NUDIX domain VM_15115 PF00583 Acetyltransferase (GNAT) family VM_15120 PF00583 Acetyltransferase (GNAT) family VM_15125 PF04875 VM_15125 VM_15130 PF00583 Acetyltransferase (GNAT) family VM_15135 PF00583 Acetyltransferase (GNAT) family VM_15140 PF13673 Acetyltransferase (GNAT) domain VM_15145 PF13673 Acetyltransferase (GNAT) domain VM_15150 PF08681 Protein of unknown function (DUF1778) VM_15155 PF04875 VM_15155 VM_15160 PF11196 VM_15160 VM_15170 PF04828 Glutathione-dependent formaldehyde-activating enzyme VM_15190 PF01124 MAPEG family VM_15195 PF00583 Acetyltransferase (GNAT) family VM_15200 PF01845 CcdB protein VM_15205 PF07362 Post-segregation antitoxin CcdA VM_15215 PF00076 RNA recognition motif VM_15220 PF00583 Acetyltransferase (GNAT) family VM_15225 PF13561 Enoyl-(Acyl carrier protein) reductase VM_15240 PF05163 DinB family VM_15245 PF13561 Enoyl-(Acyl carrier protein) reductase VM_15250 PF13289 VM_15250 VM_15255 PF05016 Plasmid stabilisation system protein VM_15260 PF03693 Uncharacterised protein family (UPF0156) VM_15265 PF13673 Acetyltransferase (GNAT) domain VM_15270 PF14280 VM_15270 VM_15275 PF11948 VM_15275 VM_15280 PF06945 VM_15280 VM_15285 PF06709 VM_15285 VM_15300 PF04875 VM_15300 VM_15305 PF04237 YjbR VM_15315 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VM_15320 PF05016 Plasmid stabilisation system protein VM_15325 PF13302 Acetyltransferase (GNAT) domain VM_15335 PF07653 Variant SH3 domain VM_15345 PF13302 Acetyltransferase (GNAT) domain VM_15355 PF08212 Lipocalin-like domain VM_15365 PF01699 Sodium/calcium exchanger protein VM_15370 PF00300 Histidine phosphatase superfamily (branch 1) VM_15375 PF04299 Putative FMN-binding domain VM_15380 PF07859 alpha/beta hydrolase fold VM_15385 PF13289 VM_15385 VM_15400 PF01243 Pyridoxamine 5'-phosphate oxidase VM_15415 PF13302 Acetyltransferase (GNAT) domain VM_15425 PF12493 VM_15425 VM_15430 PF13302 Acetyltransferase (GNAT) domain VM_15440 PF02567 Phenazine biosynthesis-like protein VM_15445 PF05488 PAAR motif VM_15455 PF00583 Acetyltransferase (GNAT) family VM_15465 PF01845 CcdB protein VM_15470 PF07362 Post-segregation antitoxin CcdA VM_15475 PF00583 Acetyltransferase (GNAT) family VM_15490 PF04299 Putative FMN-binding domain VM_15495 PF00043 Glutathione S-transferase, C-terminal domain VM_15495 PF02798 Glutathione S-transferase, N-terminal domain VM_15500 PF01810 VM_15500 VM_15505 PF00892 EamA-like transporter family VM_15510 PF01063 Aminotransferase class IV VM_15515 PF13411 MerR HTH family regulatory protein VM_15520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_15520 PF03466 LysR substrate binding domain VM_15525 PF07690 Major Facilitator Superfamily VM_15530 PF00440 Bacterial regulatory proteins, tetR family VM_15535 PF04982 VM_15535 VM_15540 PF02627 Carboxymuconolactone decarboxylase family VM_15545 PF12833 Helix-turn-helix domain VM_15550 PF13531 Bacterial extracellular solute-binding protein VM_15555 PF00588 SpoU rRNA Methylase family VM_15560 PF07969 Amidohydrolase family VM_15570 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VM_15575 PF00857 Isochorismatase family VM_15585 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase VM_15590 PF12833 Helix-turn-helix domain VM_15590 PF12852 Cupin VM_15595 PF02627 Carboxymuconolactone decarboxylase family VM_15600 PF03477 ATP cone domain VM_15600 PF13597 Anaerobic ribonucleoside-triphosphate reductase VM_15605 PF13353 4Fe-4S single cluster domain VM_15610 PF00155 Aminotransferase class I and II VM_15615 PF05618 Putative ATP-dependant zinc protease VM_15620 PF00563 EAL domain VM_15625 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_15625 PF02378 Phosphotransferase system, EIIC VM_15630 PF00294 pfkB family carbohydrate kinase VM_15635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_15635 PF00381 PTS HPr component phosphorylation site VM_15640 PF00356 Bacterial regulatory proteins, lacI family VM_15640 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VM_15645 PF00149 Calcineurin-like phosphoesterase VM_15645 PF12320 Type 5 capsule protein repressor C-terminal domain VM_15650 PF13476 AAA domain VM_15650 PF13558 Putative exonuclease SbcCD, C subunit VM_15655 PF00072 Response regulator receiver domain VM_15655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_15660 PF00155 Aminotransferase class I and II VM_15665 PF03595 Voltage-dependent anion channel VM_15670 PF00654 Voltage gated chloride channel VM_15675 PF02492 CobW/HypB/UreG, nucleotide-binding domain VM_15680 PF01926 50S ribosome-binding GTPase VM_15685 PF09264 Vibrio cholerae sialidase, lectin insertion VM_15685 PF13088 BNR repeat-like domain VM_15690 PF01979 Amidohydrolase family VM_15695 PF00480 ROK family VM_15700 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VM_15710 PF03480 Bacterial extracellular solute-binding protein, family 7 VM_15715 PF04290 VM_15715 VM_15720 PF06808 VM_15720 VM_15725 PF00701 Dihydrodipicolinate synthetase family VM_15730 PF01380 SIS domain VM_15730 PF01418 Helix-turn-helix domain, rpiR family VM_15735 PF01344 Kelch motif VM_15740 PF07646 Kelch motif VM_15745 PF09335 VM_15745 VM_15755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_15755 PF00672 HAMP domain VM_15760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_15760 PF00672 HAMP domain VM_15765 PF00563 EAL domain VM_15775 PF01292 Prokaryotic cytochrome b561 VM_15780 PF04264 YceI-like domain VM_15785 PF00571 CBS domain VM_15785 PF01226 Formate/nitrite transporter VM_15790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_15790 PF03466 LysR substrate binding domain VM_15795 PF06496 VM_15795 VM_15800 PF11398 Protein of unknown function (DUF2813) VM_15805 PF00149 Calcineurin-like phosphoesterase VM_15805 PF02872 5'-nucleotidase, C-terminal domain VM_15810 PF03741 VM_15810 VM_15820 PF03831 PhnA protein VM_15820 PF08274 PhnA Zinc-Ribbon VM_15825 PF02163 Peptidase family M50 VM_15840 PF06934 VM_15840 VM_15845 PF07690 Major Facilitator Superfamily VM_15850 PF11810 VM_15850 VM_15855 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_15855 PF00990 GGDEF domain VM_15865 PF00440 Bacterial regulatory proteins, tetR family VM_15870 PF07690 Major Facilitator Superfamily VM_15875 PF01019 Gamma-glutamyltranspeptidase VM_15880 PF11557 VM_15880 VM_15885 PF00990 GGDEF domain VM_15890 PF10719 VM_15890 VM_15895 PF10115 VM_15895 VM_15900 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VM_15900 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VM_15900 PF12769 Domain of unknown function (DUF3814) VM_15905 PF02233 NAD(P) transhydrogenase beta subunit VM_15910 PF00512 His Kinase A (phospho-acceptor) domain VM_15910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_15910 PF11884 Domain of unknown function (DUF3404) VM_15915 PF00072 Response regulator receiver domain VM_15915 PF00486 Transcriptional regulatory protein, C terminal VM_15920 PF11060 VM_15920 VM_15925 PF13729 VM_15925 VM_15930 PF03701 VM_15930 VM_15950 PF12961 Domain of Unknown Function with PDB structure (DUF3850) VM_15985 PF01935 Domain of unknown function DUF87 VM_16045 PF12375 VM_16045 VM_16050 PF12833 Helix-turn-helix domain VM_16055 PF12833 Helix-turn-helix domain VM_16060 PF00593 TonB dependent receptor VM_16060 PF07715 TonB-dependent Receptor Plug Domain VM_16070 PF00501 AMP-binding enzyme VM_16070 PF00550 Phosphopantetheine attachment site VM_16070 PF00668 Condensation domain VM_16070 PF13847 Methyltransferase domain VM_16075 PF00109 Beta-ketoacyl synthase, N-terminal domain VM_16075 PF00501 AMP-binding enzyme VM_16075 PF00550 Phosphopantetheine attachment site VM_16075 PF00668 Condensation domain VM_16075 PF00698 Acyl transferase domain VM_16075 PF00975 Thioesterase domain VM_16075 PF02801 Beta-ketoacyl synthase, C-terminal domain VM_16075 PF08242 Methyltransferase domain VM_16075 PF08659 KR domain VM_16075 PF13193 AMP-binding enzyme C-terminal domain VM_16075 PF16197 VM_16075 VM_16080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VM_16085 PF00975 Thioesterase domain VM_16090 PF00425 chorismate binding enzyme VM_16095 PF00501 AMP-binding enzyme VM_16095 PF13193 AMP-binding enzyme C-terminal domain VM_16100 PF00005 ABC transporter VM_16100 PF00664 ABC transporter transmembrane region VM_16105 PF00005 ABC transporter VM_16105 PF00664 ABC transporter transmembrane region VM_16110 PF01648 4'-phosphopantetheinyl transferase superfamily VM_16115 PF01253 Translation initiation factor SUI1 VM_16120 PF11782 VM_16120 VM_16125 PF01820 D-ala D-ala ligase N-terminus VM_16125 PF07478 D-ala D-ala ligase C-terminus VM_16130 PF05036 Sporulation related domain VM_16135 PF00583 Acetyltransferase (GNAT) family VM_16135 PF13380 CoA binding domain VM_16135 PF13549 ATP-grasp domain VM_16135 PF13607 Succinyl-CoA ligase like flavodoxin domain VM_16140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_16140 PF03466 LysR substrate binding domain VM_16145 PF00593 TonB dependent receptor VM_16145 PF07715 TonB-dependent Receptor Plug Domain VM_16150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_16150 PF12793 VM_16150 VM_16155 PF11869 VM_16155 VM_16160 PF03061 Thioesterase superfamily VM_16165 PF01435 Peptidase family M48 VM_16170 PF13275 S4 domain VM_16175 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_16180 PF00043 Glutathione S-transferase, C-terminal domain VM_16180 PF02798 Glutathione S-transferase, N-terminal domain VM_16185 PF13410 Glutathione S-transferase, C-terminal domain VM_16185 PF13417 Glutathione S-transferase, N-terminal domain VM_16190 PF00440 Bacterial regulatory proteins, tetR family VM_16195 PF03479 Domain of unknown function (DUF296) VM_16205 PF00005 ABC transporter VM_16205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_16210 PF00528 Binding-protein-dependent transport system inner membrane component VM_16210 PF12911 VM_16210 VM_16215 PF00528 Binding-protein-dependent transport system inner membrane component VM_16220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_16225 PF00293 NUDIX domain VM_16235 PF03891 VM_16235 VM_16240 PF02698 DUF218 domain VM_16245 PF07690 Major Facilitator Superfamily VM_16250 PF00892 EamA-like transporter family VM_16255 PF00392 Bacterial regulatory proteins, gntR family VM_16255 PF07702 UTRA domain VM_16260 PF00528 Binding-protein-dependent transport system inner membrane component VM_16265 PF00005 ABC transporter VM_16270 PF13343 Bacterial extracellular solute-binding protein VM_16275 PF00266 Aminotransferase class-V VM_16280 PF00202 Aminotransferase class-III VM_16285 PF13419 Haloacid dehalogenase-like hydrolase VM_16290 PF01272 Transcription elongation factor, GreA/GreB, C-term VM_16290 PF14760 Rnk N-terminus VM_16295 PF13419 Haloacid dehalogenase-like hydrolase VM_16300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_16300 PF03466 LysR substrate binding domain VM_16315 PF00465 Iron-containing alcohol dehydrogenase VM_16320 PF01741 Large-conductance mechanosensitive channel, MscL VM_16325 PF01268 Formate--tetrahydrofolate ligase VM_16330 PF01625 Peptide methionine sulfoxide reductase VM_16330 PF01641 SelR domain VM_16335 PF01227 GTP cyclohydrolase I VM_16340 PF00994 Probable molybdopterin binding domain VM_16340 PF03453 MoeA N-terminal region (domain I and II) VM_16340 PF03454 MoeA C-terminal region (domain IV) VM_16345 PF00899 ThiF family VM_16355 PF00581 Rhodanese-like domain VM_16360 PF00704 Glycosyl hydrolases family 18 VM_16365 PF04198 Putative sugar-binding domain VM_16370 PF00923 Transaldolase VM_16375 PF00456 Transketolase, thiamine diphosphate binding domain VM_16375 PF02779 Transketolase, pyrimidine binding domain VM_16375 PF02780 Transketolase, C-terminal domain VM_16380 PF00149 Calcineurin-like phosphoesterase VM_16405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VM_16405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VM_16410 PF14234 VM_16410 VM_16415 PF13302 Acetyltransferase (GNAT) domain VM_16420 PF00857 Isochorismatase family VM_16425 PF00293 NUDIX domain VM_16430 PF06942 VM_16430 VM_16435 PF12847 Methyltransferase domain VM_16440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_16440 PF03466 LysR substrate binding domain VM_16445 PF03992 Antibiotic biosynthesis monooxygenase VM_16450 PF00881 Nitroreductase family VM_16455 PF00873 AcrB/AcrD/AcrF family VM_16460 PF16576 VM_16460 VM_16470 PF04143 VM_16470 VM_16475 PF12840 Helix-turn-helix domain VM_16480 PF11127 Protein of unknown function (DUF2892) VM_16485 PF00581 Rhodanese-like domain VM_16485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VM_16485 PF07992 Pyridine nucleotide-disulphide oxidoreductase VM_16490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_16490 PF03466 LysR substrate binding domain VM_16495 PF13437 HlyD family secretion protein VM_16495 PF13533 Biotin-lipoyl like VM_16500 PF11168 VM_16500 VM_16500 PF13515 VM_16500 VM_16510 PF01553 Acyltransferase VM_16510 PF13444 Acetyltransferase (GNAT) domain VM_16520 PF04945 YHS domain VM_16525 PF05742 VM_16525 VM_16540 PF09335 VM_16540 VM_16545 PF11269 Protein of unknown function (DUF3069) VM_16550 PF01266 FAD dependent oxidoreductase VM_16550 PF16901 VM_16550 VM_16555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_16555 PF08447 PAS fold VM_16560 PF00691 OmpA family VM_16565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VM_16565 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VM_16570 PF01609 Transposase DDE domain VM_16570 PF02281 Transposase Tn5 dimerisation domain VM_16570 PF14706 Transposase DNA-binding VM_16575 PF13419 Haloacid dehalogenase-like hydrolase VM_16580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_16585 PF03606 VM_16585 VM_16590 PF03313 VM_16590 VM_16590 PF03315 Serine dehydratase beta chain VM_16595 PF00072 Response regulator receiver domain VM_16595 PF00196 Bacterial regulatory proteins, luxR family VM_16600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_16600 PF07730 Histidine kinase VM_16600 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VM_16605 PF12838 4Fe-4S dicluster domain VM_16610 PF03927 NapD protein VM_16615 PF00384 Molybdopterin oxidoreductase VM_16615 PF01568 Molydopterin dinucleotide binding domain VM_16615 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VM_16620 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VM_16625 PF03264 NapC/NirT cytochrome c family, N-terminal region VM_16630 PF09574 VM_16630 VM_16635 PF01966 HD domain VM_16640 PF00072 Response regulator receiver domain VM_16640 PF00196 Bacterial regulatory proteins, luxR family VM_16645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_16645 PF05231 VM_16645 VM_16645 PF07730 Histidine kinase VM_16650 PF07690 Major Facilitator Superfamily VM_16655 PF13343 Bacterial extracellular solute-binding protein VM_16660 PF00528 Binding-protein-dependent transport system inner membrane component VM_16665 PF00005 ABC transporter VM_16665 PF08402 TOBE domain VM_16670 PF00691 OmpA family VM_16680 PF16964 VM_16680 VM_16685 PF07811 VM_16685 VM_16690 PF13432 Tetratricopeptide repeat VM_16695 PF00482 Type II secretion system (T2SS), protein F VM_16700 PF00482 Type II secretion system (T2SS), protein F VM_16705 PF00437 Type II/IV secretion system protein VM_16710 PF13614 AAA domain VM_16720 PF00263 VM_16720 VM_16720 PF13629 VM_16720 VM_16730 PF04964 VM_16730 VM_16735 PF01478 Type IV leader peptidase family VM_16740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_16750 PF07167 VM_16750 VM_16755 PF09361 VM_16755 VM_16760 PF00108 Thiolase, N-terminal domain VM_16760 PF02803 Thiolase, C-terminal domain VM_16765 PF13561 Enoyl-(Acyl carrier protein) reductase VM_16770 PF01797 Transposase IS200 like VM_16775 PF00728 Glycosyl hydrolase family 20, catalytic domain VM_16775 PF02838 Glycosyl hydrolase family 20, domain 2 VM_16775 PF03173 Putative carbohydrate binding domain VM_16775 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VM_16785 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VM_16790 PF02378 Phosphotransferase system, EIIC VM_16795 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_16800 PF02355 Protein export membrane protein VM_16800 PF07549 SecD/SecF GG Motif VM_16805 PF02355 Protein export membrane protein VM_16805 PF07549 SecD/SecF GG Motif VM_16805 PF13721 SecD export protein N-terminal TM region VM_16820 PF00990 GGDEF domain VM_16820 PF13426 PAS domain VM_16825 PF00483 Nucleotidyl transferase VM_16830 PF00704 Glycosyl hydrolases family 18 VM_16830 PF06483 VM_16830 VM_16835 PF00465 Iron-containing alcohol dehydrogenase VM_16840 PF07947 VM_16840 VM_16845 PF00072 Response regulator receiver domain VM_16845 PF02954 Bacterial regulatory protein, Fis family VM_16845 PF14532 Sigma-54 interaction domain VM_16850 PF00512 His Kinase A (phospho-acceptor) domain VM_16850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_16855 PF13343 Bacterial extracellular solute-binding protein VM_16865 PF07690 Major Facilitator Superfamily VM_16870 PF00224 Pyruvate kinase, barrel domain VM_16870 PF02887 Pyruvate kinase, alpha/beta domain VM_16875 PF00072 Response regulator receiver domain VM_16875 PF00512 His Kinase A (phospho-acceptor) domain VM_16875 PF01627 Hpt domain VM_16875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_16880 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VM_16885 PF02142 MGS-like domain VM_16895 PF01569 PAP2 superfamily VM_16900 PF01219 Prokaryotic diacylglycerol kinase VM_16905 PF13670 VM_16905 VM_16910 PF01292 Prokaryotic cytochrome b561 VM_16915 PF01447 Thermolysin metallopeptidase, catalytic domain VM_16915 PF02868 Thermolysin metallopeptidase, alpha-helical domain VM_16920 PF00580 UvrD/REP helicase N-terminal domain VM_16920 PF12462 VM_16920 VM_16920 PF13361 UvrD-like helicase C-terminal domain VM_16925 PF12805 VM_16925 VM_16925 PF13515 VM_16925 VM_16940 PF00368 Hydroxymethylglutaryl-coenzyme A reductase VM_16945 PF00005 ABC transporter VM_16945 PF03459 TOBE domain VM_16950 PF00528 Binding-protein-dependent transport system inner membrane component VM_16955 PF13531 Bacterial extracellular solute-binding protein VM_16960 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VM_16960 PF07685 CobB/CobQ-like glutamine amidotransferase domain VM_16965 PF04076 Bacterial OB fold (BOF) protein VM_16975 PF07238 PilZ domain VM_16975 PF12945 Flagellar protein YcgR VM_16980 PF00072 Response regulator receiver domain VM_16980 PF00512 His Kinase A (phospho-acceptor) domain VM_16980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_16980 PF09308 LuxQ, periplasmic VM_16985 PF13407 Periplasmic binding protein domain VM_16990 PF13729 VM_16990 VM_16995 PF01541 GIY-YIG catalytic domain VM_17000 PF04337 Protein of unknown function, DUF480 VM_17010 PF04363 VM_17010 VM_17015 PF10688 VM_17015 VM_17020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VM_17020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VM_17025 PF00230 Major intrinsic protein VM_17035 PF01266 FAD dependent oxidoreductase VM_17035 PF04324 BFD-like [2Fe-2S] binding domain VM_17040 PF00890 FAD binding domain VM_17045 PF02754 VM_17045 VM_17045 PF13183 4Fe-4S dicluster domain VM_17050 PF13437 HlyD family secretion protein VM_17055 PF13641 Glycosyltransferase like family 2 VM_17060 PF00990 GGDEF domain VM_17065 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VM_17065 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VM_17070 PF00085 Thioredoxin VM_17075 PF07690 Major Facilitator Superfamily VM_17080 PF11756 VM_17080 VM_17085 PF01764 Lipase (class 3) VM_17100 PF00384 Molybdopterin oxidoreductase VM_17100 PF01568 Molydopterin dinucleotide binding domain VM_17105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_17105 PF03466 LysR substrate binding domain VM_17110 PF02634 FdhD/NarQ family VM_17115 PF00528 Binding-protein-dependent transport system inner membrane component VM_17120 PF00528 Binding-protein-dependent transport system inner membrane component VM_17125 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_17130 PF00005 ABC transporter VM_17140 PF05762 VWA domain containing CoxE-like protein VM_17145 PF07728 AAA domain (dynein-related subfamily) VM_17145 PF12592 Protein of unknown function (DUF3763) VM_17150 PF00293 NUDIX domain VM_17155 PF01212 Beta-eliminating lyase VM_17160 PF00034 Cytochrome c VM_17165 PF00440 Bacterial regulatory proteins, tetR family VM_17170 PF00270 DEAD/DEAH box helicase VM_17170 PF00271 Helicase conserved C-terminal domain VM_17175 PF04336 VM_17175 VM_17185 PF03222 Tryptophan/tyrosine permease family VM_17190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_17195 PF16363 VM_17195 VM_17200 PF03746 LamB/YcsF family VM_17205 PF02682 Allophanate hydrolase subunit 1 VM_17210 PF02626 Allophanate hydrolase subunit 2 VM_17215 PF01266 FAD dependent oxidoreductase VM_17220 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VM_17220 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VM_17225 PF02687 VM_17225 VM_17230 PF00005 ABC transporter VM_17235 PF13472 GDSL-like Lipase/Acylhydrolase family VM_17240 PF07055 Enoyl reductase FAD binding domain VM_17240 PF12241 Trans-2-enoyl-CoA reductase catalytic region VM_17240 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VM_17245 PF00563 EAL domain VM_17245 PF00990 GGDEF domain VM_17245 PF01590 GAF domain VM_17250 PF09818 Predicted ATPase of the ABC class VM_17255 PF00226 DnaJ domain VM_17255 PF12339 VM_17255 VM_17260 PF09997 VM_17260 VM_17265 PF03091 CutA1 divalent ion tolerance protein VM_17275 PF13419 Haloacid dehalogenase-like hydrolase VM_17285 PF05981 VM_17285 VM_17290 PF00294 pfkB family carbohydrate kinase VM_17295 PF01797 Transposase IS200 like VM_17300 PF00884 Sulfatase VM_17305 PF00089 Trypsin VM_17310 PF00270 DEAD/DEAH box helicase VM_17310 PF00271 Helicase conserved C-terminal domain VM_17310 PF03880 DbpA RNA binding domain VM_17315 PF00575 S1 RNA binding domain VM_17315 PF00773 RNB domain VM_17315 PF08206 Ribonuclease B OB domain VM_17320 PF11225 VM_17320 VM_17325 PF12849 PBP superfamily domain VM_17330 PF01575 MaoC like domain VM_17335 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VM_17340 PF03067 Chitin binding domain VM_17360 PF02321 Outer membrane efflux protein VM_17365 PF11604 Copper binding periplasmic protein CusF VM_17365 PF16576 VM_17365 VM_17370 PF00873 AcrB/AcrD/AcrF family VM_17380 PF13407 Periplasmic binding protein domain VM_17385 PF02653 VM_17385 VM_17390 PF00005 ABC transporter VM_17395 PF00465 Iron-containing alcohol dehydrogenase VM_17400 PF00596 Class II Aldolase and Adducin N-terminal domain VM_17405 PF05025 RbsD / FucU transport protein family VM_17410 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VM_17410 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VM_17415 PF02952 L-fucose isomerase, C-terminal domain VM_17415 PF07881 L-fucose isomerase, first N-terminal domain VM_17415 PF07882 L-fucose isomerase, second N-terminal domain VM_17420 PF00455 VM_17420 VM_17420 PF08220 DeoR-like helix-turn-helix domain VM_17425 PF13483 Beta-lactamase superfamily domain VM_17430 PF00455 VM_17430 VM_17430 PF08220 DeoR-like helix-turn-helix domain VM_17435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_17435 PF03611 VM_17435 VM_17440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_17445 PF00596 Class II Aldolase and Adducin N-terminal domain VM_17450 PF08282 haloacid dehalogenase-like hydrolase VM_17455 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VM_17460 PF01261 Xylose isomerase-like TIM barrel VM_17470 PF02656 VM_17470 VM_17475 PF02656 VM_17475 VM_17480 PF01380 SIS domain VM_17480 PF01418 Helix-turn-helix domain, rpiR family VM_17485 PF00367 phosphotransferase system, EIIB VM_17485 PF02378 Phosphotransferase system, EIIC VM_17490 PF13580 SIS domain VM_17500 PF12682 Flavodoxin VM_17515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_17515 PF03466 LysR substrate binding domain VM_17520 PF13289 VM_17520 VM_17525 PF01935 Domain of unknown function DUF87 VM_17530 PF00871 Acetokinase family VM_17535 PF09981 Uncharacterized protein conserved in bacteria (DUF2218) VM_17540 PF00593 TonB dependent receptor VM_17540 PF07715 TonB-dependent Receptor Plug Domain VM_17545 PF12833 Helix-turn-helix domain VM_17550 PF00005 ABC transporter VM_17555 PF01032 FecCD transport family VM_17560 PF01032 FecCD transport family VM_17565 PF01497 Periplasmic binding protein VM_17570 PF13230 Glutamine amidotransferases class-II VM_17580 PF00801 PKD domain VM_17580 PF05547 VM_17580 VM_17585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_17585 PF12729 VM_17585 VM_17590 PF07968 Leukocidin/Hemolysin toxin family VM_17590 PF12563 Hemolytic toxin N terminal VM_17590 PF16458 VM_17590 VM_17595 PF00657 GDSL-like Lipase/Acylhydrolase VM_17600 PF00990 GGDEF domain VM_17610 PF07690 Major Facilitator Superfamily VM_17615 PF03553 VM_17615 VM_17625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_17625 PF17149 VM_17625 VM_17630 PF00072 Response regulator receiver domain VM_17630 PF01966 HD domain VM_17630 PF11849 VM_17630 VM_17635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_17635 PF08376 Nitrate and nitrite sensing VM_17640 PF01467 Cytidylyltransferase VM_17645 PF02540 NAD synthase VM_17650 PF03605 VM_17650 VM_17655 PF00270 DEAD/DEAH box helicase VM_17655 PF00271 Helicase conserved C-terminal domain VM_17660 PF01797 Transposase IS200 like VM_17670 PF13580 SIS domain VM_17675 PF13580 SIS domain VM_17680 PF03613 VM_17680 VM_17685 PF03609 VM_17685 VM_17690 PF03830 PTS system sorbose subfamily IIB component VM_17710 PF01055 Glycosyl hydrolases family 31 VM_17710 PF16338 VM_17710 VM_17710 PF17137 VM_17710 VM_17715 PF00884 Sulfatase VM_17725 PF13229 Right handed beta helix region VM_17730 PF02311 AraC-like ligand binding domain VM_17730 PF12833 Helix-turn-helix domain VM_17735 PF10022 VM_17735 VM_17740 PF03480 Bacterial extracellular solute-binding protein, family 7 VM_17745 PF04290 VM_17745 VM_17745 PF06808 VM_17745 VM_17750 PF07470 Glycosyl Hydrolase Family 88 VM_17755 PF00392 Bacterial regulatory proteins, gntR family VM_17755 PF07702 UTRA domain VM_17760 PF13580 SIS domain VM_17765 PF03611 VM_17765 VM_17775 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_17780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_17785 PF02633 Creatinine amidohydrolase VM_17790 PF02126 Phosphotriesterase family VM_17800 PF00478 IMP dehydrogenase / GMP reductase domain VM_17805 PF01389 OmpA-like transmembrane domain VM_17810 PF07885 Ion channel VM_17815 PF03553 VM_17815 VM_17820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VM_17820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VM_17825 PF01256 Carbohydrate kinase VM_17825 PF03853 YjeF-related protein N-terminus VM_17830 PF00989 PAS fold VM_17835 PF00072 Response regulator receiver domain VM_17850 PF03889 VM_17850 VM_17855 PF00313 'Cold-shock' DNA-binding domain VM_17860 PF00042 Globin VM_17860 PF00175 Oxidoreductase NAD-binding domain VM_17860 PF00970 Oxidoreductase FAD-binding domain VM_17865 PF00158 Sigma-54 interaction domain VM_17865 PF01590 GAF domain VM_17870 PF00924 Mechanosensitive ion channel VM_17875 PF02281 Transposase Tn5 dimerisation domain VM_17875 PF14706 Transposase DNA-binding VM_17880 PF01546 Peptidase family M20/M25/M40 VM_17880 PF07687 Peptidase dimerisation domain VM_17885 PF01773 Na+ dependent nucleoside transporter N-terminus VM_17885 PF07662 Na+ dependent nucleoside transporter C-terminus VM_17885 PF07670 Nucleoside recognition VM_17890 PF01323 DSBA-like thioredoxin domain VM_17900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_17905 PF07726 ATPase family associated with various cellular activities (AAA) VM_17910 PF01882 VM_17910 VM_17915 PF14316 VM_17915 VM_17920 PF00092 von Willebrand factor type A domain VM_17925 PF13519 von Willebrand factor type A domain VM_17925 PF14559 Tetratricopeptide repeat VM_17930 PF13584 VM_17930 VM_17935 PF04402 Protein of unknown function (DUF541) VM_17940 PF00313 'Cold-shock' DNA-binding domain VM_17945 PF00990 GGDEF domain VM_17950 PF03734 L,D-transpeptidase catalytic domain VM_17955 PF12843 VM_17955 VM_17965 PF01212 Beta-eliminating lyase VM_17970 PF03222 Tryptophan/tyrosine permease family VM_17975 PF00005 ABC transporter VM_17980 PF01794 VM_17980 VM_17980 PF08022 VM_17980 VM_17985 PF00356 Bacterial regulatory proteins, lacI family VM_17985 PF13377 Periplasmic binding protein-like domain VM_17990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_17995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_18000 PF03611 VM_18000 VM_18005 PF01327 Polypeptide deformylase VM_18010 PF10462 Peptidase M66 VM_18010 PF12561 VM_18010 VM_18015 PF01266 FAD dependent oxidoreductase VM_18020 PF06808 VM_18020 VM_18025 PF16868 VM_18025 VM_18035 PF00072 Response regulator receiver domain VM_18035 PF00158 Sigma-54 interaction domain VM_18035 PF02954 Bacterial regulatory protein, Fis family VM_18040 PF00155 Aminotransferase class I and II VM_18040 PF00392 Bacterial regulatory proteins, gntR family VM_18045 PF02652 VM_18045 VM_18050 PF00512 His Kinase A (phospho-acceptor) domain VM_18050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_18050 PF13426 PAS domain VM_18055 PF02839 Carbohydrate binding domain VM_18055 PF03067 Chitin binding domain VM_18060 PF11777 VM_18060 VM_18065 PF07690 Major Facilitator Superfamily VM_18070 PF03009 Glycerophosphoryl diester phosphodiesterase family VM_18075 PF00027 Cyclic nucleotide-binding domain VM_18080 PF01048 Phosphorylase superfamily VM_18085 PF04973 VM_18085 VM_18090 PF00356 Bacterial regulatory proteins, lacI family VM_18090 PF13377 Periplasmic binding protein-like domain VM_18095 PF00294 pfkB family carbohydrate kinase VM_18100 PF13407 Periplasmic binding protein domain VM_18105 PF02653 VM_18105 VM_18110 PF00005 ABC transporter VM_18115 PF05025 RbsD / FucU transport protein family VM_18125 PF11216 VM_18125 VM_18140 PF01471 Putative peptidoglycan binding domain VM_18140 PF05954 Phage late control gene D protein (GPD) VM_18150 PF06812 VM_18150 VM_18155 PF06744 VM_18155 VM_18155 PF06761 VM_18155 VM_18155 PF14331 VM_18155 VM_18160 PF06812 VM_18160 VM_18160 PF16989 VM_18160 VM_18165 PF11319 VM_18165 VM_18170 PF00158 Sigma-54 interaction domain VM_18170 PF02954 Bacterial regulatory protein, Fis family VM_18175 PF00004 ATPase family associated with various cellular activities (AAA) VM_18175 PF02861 Clp amino terminal domain VM_18175 PF07724 AAA domain (Cdc48 subfamily) VM_18175 PF10431 C-terminal, D2-small domain, of ClpB protein VM_18180 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) VM_18185 PF05936 VM_18185 VM_18190 PF12790 Type VI secretion lipoprotein VM_18195 PF00498 FHA domain VM_18200 PF06996 VM_18200 VM_18205 PF05947 VM_18205 VM_18210 PF04965 Gene 25-like lysozyme VM_18220 PF05591 VM_18220 VM_18230 PF05488 PAAR motif VM_18235 PF00849 RNA pseudouridylate synthase VM_18240 PF00916 VM_18240 VM_18240 PF01740 STAS domain VM_18245 PF13419 Haloacid dehalogenase-like hydrolase VM_18250 PF00563 EAL domain VM_18255 PF00581 Rhodanese-like domain VM_18260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VM_18260 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VM_18265 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VM_18275 PF01483 Proprotein convertase P-domain VM_18275 PF13582 Metallo-peptidase family M12B Reprolysin-like VM_18285 PF01638 HxlR-like helix-turn-helix VM_18295 PF02001 VM_18295 VM_18300 PF02698 DUF218 domain VM_18305 PF00892 EamA-like transporter family VM_18310 PF00375 Sodium:dicarboxylate symporter family VM_18315 PF07670 Nucleoside recognition VM_18320 PF07670 Nucleoside recognition VM_18325 PF03600 Citrate transporter VM_18330 PF00072 Response regulator receiver domain VM_18335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_18335 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VM_18335 PF17203 VM_18335 VM_18340 PF00939 Sodium:sulfate symporter transmembrane region VM_18350 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VM_18350 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VM_18355 PF02805 Metal binding domain of Ada VM_18355 PF06029 AlkA N-terminal domain VM_18355 PF12833 Helix-turn-helix domain VM_18360 PF07681 VM_18360 VM_18365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_18365 PF03466 LysR substrate binding domain VM_18370 PF04219 VM_18370 VM_18375 PF05013 N-formylglutamate amidohydrolase VM_18375 PF08014 VM_18375 VM_18380 PF11280 VM_18380 VM_18385 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VM_18390 PF08238 Sel1 repeat VM_18395 PF07148 VM_18395 VM_18400 PF02264 LamB porin VM_18405 PF00128 Alpha amylase, catalytic domain VM_18405 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VM_18410 PF01566 VM_18410 VM_18415 PF11212 VM_18415 VM_18420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_18420 PF00672 HAMP domain VM_18420 PF12729 VM_18420 VM_18425 PF01547 Bacterial extracellular solute-binding protein VM_18430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_18430 PF12729 VM_18430 VM_18435 PF11730 VM_18435 VM_18440 PF04224 VM_18440 VM_18445 PF00462 Glutaredoxin VM_18450 PF12833 Helix-turn-helix domain VM_18450 PF12852 Cupin VM_18460 PF00892 EamA-like transporter family VM_18470 PF01810 VM_18470 VM_18475 PF01411 tRNA synthetases class II (A) VM_18480 PF13640 2OG-Fe(II) oxygenase superfamily VM_18485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_18485 PF03466 LysR substrate binding domain VM_18490 PF02056 Family 4 glycosyl hydrolase VM_18490 PF11975 Family 4 glycosyl hydrolase C-terminal domain VM_18500 PF00270 DEAD/DEAH box helicase VM_18500 PF00271 Helicase conserved C-terminal domain VM_18505 PF03786 D-mannonate dehydratase (UxuA) VM_18510 PF00392 Bacterial regulatory proteins, gntR family VM_18510 PF07729 FCD domain VM_18515 PF03480 Bacterial extracellular solute-binding protein, family 7 VM_18520 PF04290 VM_18520 VM_18525 PF06808 VM_18525 VM_18530 PF01232 Mannitol dehydrogenase Rossmann domain VM_18530 PF08125 Mannitol dehydrogenase C-terminal domain VM_18535 PF02614 Glucuronate isomerase VM_18540 PF00294 pfkB family carbohydrate kinase VM_18545 PF01081 KDPG and KHG aldolase VM_18550 PF10688 VM_18550 VM_18555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_18555 PF03466 LysR substrate binding domain VM_18560 PF04399 Glutaredoxin 2, C terminal domain VM_18560 PF13417 Glutathione S-transferase, N-terminal domain VM_18565 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VM_18570 PF08348 VM_18570 VM_18570 PF13309 VM_18570 VM_18575 PF03313 VM_18575 VM_18580 PF01042 Endoribonuclease L-PSP VM_18585 PF03222 Tryptophan/tyrosine permease family VM_18590 PF02274 Amidinotransferase VM_18595 PF00005 ABC transporter VM_18595 PF00664 ABC transporter transmembrane region VM_18600 PF04286 VM_18600 VM_18605 PF01810 VM_18605 VM_18610 PF02311 AraC-like ligand binding domain VM_18610 PF12833 Helix-turn-helix domain VM_18615 PF03591 VM_18615 VM_18620 PF05437 VM_18620 VM_18625 PF01557 Fumarylacetoacetate (FAA) hydrolase family VM_18630 PF01047 MarR family VM_18635 PF02566 OsmC-like protein VM_18640 PF13609 Gram-negative porin VM_18645 PF00892 EamA-like transporter family VM_18650 PF00462 Glutaredoxin VM_18665 PF01039 Carboxyl transferase domain VM_18670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_18670 PF03466 LysR substrate binding domain VM_18675 PF02386 Cation transport protein VM_18680 PF02254 TrkA-N domain VM_18685 PF00072 Response regulator receiver domain VM_18685 PF00486 Transcriptional regulatory protein, C terminal VM_18690 PF00512 His Kinase A (phospho-acceptor) domain VM_18690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_18690 PF13493 Domain of unknown function (DUF4118) VM_18700 PF13411 MerR HTH family regulatory protein VM_18705 PF07690 Major Facilitator Superfamily VM_18710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_18710 PF03466 LysR substrate binding domain VM_18715 PF00563 EAL domain VM_18715 PF00990 GGDEF domain VM_18720 PF01551 Peptidase family M23 VM_18720 PF04225 Opacity-associated protein A LysM-like domain VM_18730 PF00916 VM_18730 VM_18730 PF01740 STAS domain VM_18735 PF07670 Nucleoside recognition VM_18740 PF00174 Oxidoreductase molybdopterin binding domain VM_18745 PF00990 GGDEF domain VM_18750 PF00005 ABC transporter VM_18755 PF00528 Binding-protein-dependent transport system inner membrane component VM_18760 PF00528 Binding-protein-dependent transport system inner membrane component VM_18765 PF12849 PBP superfamily domain VM_18770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_18770 PF00672 HAMP domain VM_18775 PF00270 DEAD/DEAH box helicase VM_18775 PF00271 Helicase conserved C-terminal domain VM_18780 PF04728 Lipoprotein leucine-zipper VM_18785 PF01476 LysM domain VM_18785 PF03734 L,D-transpeptidase catalytic domain VM_18790 PF00875 DNA photolyase VM_18790 PF03441 FAD binding domain of DNA photolyase VM_18795 PF13411 MerR HTH family regulatory protein VM_18800 PF04463 VM_18800 VM_18800 PF08349 VM_18800 VM_18810 PF01048 Phosphorylase superfamily VM_18830 PF11742 VM_18830 VM_18835 PF13533 Biotin-lipoyl like VM_18840 PF03572 Peptidase family S41 VM_18840 PF07676 WD40-like Beta Propeller Repeat VM_18840 PF14684 Tricorn protease C1 domain VM_18845 PF11188 VM_18845 VM_18850 PF13443 Cro/C1-type HTH DNA-binding domain VM_18855 PF14542 GCN5-related N-acetyl-transferase VM_18860 PF07238 PilZ domain VM_18860 PF12945 Flagellar protein YcgR VM_18865 PF03616 VM_18865 VM_18870 PF04018 VM_18870 VM_18880 PF02630 SCO1/SenC VM_18885 PF04314 Protein of unknown function (DUF461) VM_18890 PF00375 Sodium:dicarboxylate symporter family VM_18895 PF02225 PA domain VM_18895 PF04389 Peptidase family M28 VM_18900 PF01569 PAP2 superfamily VM_18905 PF08668 HDOD domain VM_18910 PF05787 Bacterial protein of unknown function (DUF839) VM_18920 PF01614 Bacterial transcriptional regulator VM_18920 PF09339 IclR helix-turn-helix domain VM_18925 PF00704 Glycosyl hydrolases family 18 VM_18925 PF02010 VM_18925 VM_18925 PF08329 Chitinase A, N-terminal domain VM_18930 PF09829 VM_18930 VM_18935 PF00939 Sodium:sulfate symporter transmembrane region VM_18940 PF03547 VM_18940 VM_18945 PF01757 VM_18945 VM_18950 PF01124 MAPEG family VM_18965 PF13503 VM_18965 VM_18970 PF05954 Phage late control gene D protein (GPD) VM_18975 PF05638 Protein of unknown function (DUF796) VM_18980 PF00128 Alpha amylase, catalytic domain VM_18980 PF02806 Alpha amylase, C-terminal all-beta domain VM_18980 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VM_18985 PF02446 4-alpha-glucanotransferase VM_18990 PF00343 Carbohydrate phosphorylase VM_18995 PF00196 Bacterial regulatory proteins, luxR family VM_19000 PF10928 Protein of unknown function (DUF2810) VM_19005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_19005 PF17200 VM_19005 VM_19010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VM_19010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VM_19015 PF01709 Transcriptional regulator VM_19020 PF11686 VM_19020 VM_19035 PF11826 VM_19035 VM_19045 PF13614 AAA domain VM_19050 PF02195 ParB-like nuclease domain VM_19055 PF13416 Bacterial extracellular solute-binding protein VM_19060 PF05127 Helicase VM_19060 PF08351 Domain of unknown function (DUF1726) VM_19060 PF13718 GNAT acetyltransferase 2 VM_19065 PF12261 VM_19065 VM_19070 PF00501 AMP-binding enzyme VM_19075 PF14518 Iron-containing redox enzyme VM_19080 PF00106 short chain dehydrogenase VM_19085 PF14559 Tetratricopeptide repeat VM_19090 PF00072 Response regulator receiver domain VM_19090 PF00486 Transcriptional regulatory protein, C terminal VM_19095 PF00512 His Kinase A (phospho-acceptor) domain VM_19095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_19095 PF08521 VM_19095 VM_19100 PF00884 Sulfatase VM_19100 PF08019 VM_19100 VM_19105 PF00005 ABC transporter VM_19110 PF00528 Binding-protein-dependent transport system inner membrane component VM_19115 PF00528 Binding-protein-dependent transport system inner membrane component VM_19120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_19125 PF13466 STAS domain VM_19130 PF00072 Response regulator receiver domain VM_19135 PF01584 CheW-like domain VM_19135 PF01627 Hpt domain VM_19135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_19135 PF02895 Signal transducing histidine kinase, homodimeric domain VM_19140 PF01584 CheW-like domain VM_19145 PF01584 CheW-like domain VM_19150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_19150 PF00672 HAMP domain VM_19150 PF13188 PAS domain VM_19150 PF13426 PAS domain VM_19155 PF01739 CheR methyltransferase, SAM binding domain VM_19155 PF03705 CheR methyltransferase, all-alpha domain VM_19160 PF03975 CheD chemotactic sensory transduction VM_19165 PF00072 Response regulator receiver domain VM_19165 PF01339 CheB methylesterase VM_19170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_19175 PF01740 STAS domain VM_19180 PF00072 Response regulator receiver domain VM_19180 PF07228 Stage II sporulation protein E (SpoIIE) VM_19180 PF13581 Histidine kinase-like ATPase domain VM_19185 PF03961 VM_19185 VM_19190 PF00005 ABC transporter VM_19190 PF00664 ABC transporter transmembrane region VM_19195 PF00563 EAL domain VM_19195 PF00990 GGDEF domain VM_19195 PF16448 VM_19195 VM_19200 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP VM_19205 PF13437 HlyD family secretion protein VM_19205 PF13533 Biotin-lipoyl like VM_19210 PF01243 Pyridoxamine 5'-phosphate oxidase VM_19210 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VM_19215 PF00196 Bacterial regulatory proteins, luxR family VM_19215 PF08448 PAS fold VM_19220 PF03781 Sulfatase-modifying factor enzyme 1 VM_19220 PF08308 VM_19220 VM_19225 PF08308 VM_19225 VM_19230 PF02311 AraC-like ligand binding domain VM_19230 PF12833 Helix-turn-helix domain VM_19235 PF00171 Aldehyde dehydrogenase family VM_19235 PF01619 Proline dehydrogenase VM_19235 PF14850 DNA-binding domain of Proline dehydrogenase VM_19245 PF00474 Sodium:solute symporter family VM_19255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_19255 PF00672 HAMP domain VM_19255 PF02743 Cache domain VM_19260 PF01037 AsnC family VM_19260 PF13412 Winged helix-turn-helix DNA-binding VM_19265 PF00171 Aldehyde dehydrogenase family VM_19275 PF17131 VM_19275 VM_19280 PF05655 VM_19280 VM_19285 PF13521 AAA domain VM_19290 PF03176 MMPL family VM_19295 PF00196 Bacterial regulatory proteins, luxR family VM_19300 PF01276 Orn/Lys/Arg decarboxylase, major domain VM_19300 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VM_19300 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VM_19305 PF13520 Amino acid permease VM_19310 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VM_19320 PF04013 Putative SAM-dependent RNA methyltransferase VM_19325 PF00579 tRNA synthetases class I (W and Y) VM_19330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_19330 PF03466 LysR substrate binding domain VM_19335 PF00106 short chain dehydrogenase VM_19340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_19340 PF02743 Cache domain VM_19345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_19345 PF03466 LysR substrate binding domain VM_19350 PF13460 NADH(P)-binding VM_19355 PF00892 EamA-like transporter family VM_19360 PF08240 Alcohol dehydrogenase GroES-like domain VM_19360 PF13602 Zinc-binding dehydrogenase VM_19365 PF13743 Thioredoxin VM_19370 PF03358 NADPH-dependent FMN reductase VM_19375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_19375 PF03466 LysR substrate binding domain VM_19380 PF00581 Rhodanese-like domain VM_19385 PF12802 MarR family VM_19390 PF00892 EamA-like transporter family VM_19395 PF03358 NADPH-dependent FMN reductase VM_19400 PF01925 VM_19400 VM_19405 PF03733 VM_19405 VM_19415 PF00753 Metallo-beta-lactamase superfamily VM_19420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VM_19425 PF05068 Mannitol repressor VM_19430 PF01232 Mannitol dehydrogenase Rossmann domain VM_19430 PF08125 Mannitol dehydrogenase C-terminal domain VM_19435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_19435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_19435 PF02378 Phosphotransferase system, EIIC VM_19440 PF01551 Peptidase family M23 VM_19445 PF04519 VM_19445 VM_19450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VM_19450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VM_19450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VM_19450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VM_19455 PF00528 Binding-protein-dependent transport system inner membrane component VM_19460 PF00497 Bacterial extracellular solute-binding proteins, family 3 VM_19465 PF00528 Binding-protein-dependent transport system inner membrane component VM_19470 PF00005 ABC transporter VM_19475 PF00793 DAHP synthetase I family VM_19480 PF01554 MatE VM_19485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_19485 PF08447 PAS fold VM_19490 PF01470 Pyroglutamyl peptidase VM_19495 PF01740 STAS domain VM_19495 PF11563 Protoglobin VM_19505 PF13581 Histidine kinase-like ATPase domain VM_19510 PF07228 Stage II sporulation protein E (SpoIIE) VM_19515 PF00072 Response regulator receiver domain VM_19515 PF00512 His Kinase A (phospho-acceptor) domain VM_19515 PF00989 PAS fold VM_19515 PF01627 Hpt domain VM_19515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_19520 PF00072 Response regulator receiver domain VM_19520 PF13487 HD domain VM_19525 PF00391 PEP-utilising enzyme, mobile domain VM_19525 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VM_19525 PF02896 PEP-utilising enzyme, TIM barrel domain VM_19530 PF03618 VM_19530 VM_19535 PF01565 FAD binding domain VM_19535 PF02754 VM_19535 VM_19535 PF02913 FAD linked oxidases, C-terminal domain VM_19535 PF13183 4Fe-4S dicluster domain VM_19540 PF01070 FMN-dependent dehydrogenase VM_19545 PF02652 VM_19545 VM_19550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_19550 PF03466 LysR substrate binding domain VM_19555 PF00005 ABC transporter VM_19555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_19565 PF05362 Lon protease (S16) C-terminal proteolytic domain VM_19565 PF13654 AAA domain VM_19570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_19570 PF00672 HAMP domain VM_19580 PF07690 Major Facilitator Superfamily VM_19585 PF11012 VM_19585 VM_19590 PF06865 Protein of unknown function (DUF1255) VM_19595 PF02678 Pirin VM_19595 PF05726 Pirin C-terminal cupin domain VM_19605 PF00990 GGDEF domain VM_19610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_19610 PF03466 LysR substrate binding domain VM_19615 PF00892 EamA-like transporter family VM_19620 PF12060 VM_19620 VM_19625 PF13532 2OG-Fe(II) oxygenase superfamily VM_19630 PF00990 GGDEF domain VM_19630 PF03924 CHASE domain VM_19635 PF01381 Helix-turn-helix VM_19635 PF12268 VM_19635 VM_19645 PF00990 GGDEF domain VM_19650 PF01047 MarR family VM_19655 PF00072 Response regulator receiver domain VM_19655 PF01584 CheW-like domain VM_19660 PF13616 PPIC-type PPIASE domain VM_19670 PF00882 Zinc dependent phospholipase C VM_19675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_19675 PF03466 LysR substrate binding domain VM_19680 PF06742 Protein of unknown function (DUF1214) VM_19680 PF06863 Protein of unknown function (DUF1254) VM_19685 PF00196 Bacterial regulatory proteins, luxR family VM_19690 PF01906 Putative heavy-metal-binding VM_19695 PF07383 VM_19695 VM_19700 PF01464 Transglycosylase SLT domain VM_19705 PF05130 FlgN protein VM_19715 PF13144 SAF-like VM_19720 PF00460 Flagella basal body rod protein VM_19725 PF00460 Flagella basal body rod protein VM_19725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_19730 PF03963 VM_19730 VM_19730 PF13860 FlgD Ig-like domain VM_19730 PF13861 FlgD Tudor-like domain VM_19735 PF00460 Flagella basal body rod protein VM_19735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_19735 PF07559 Flagellar basal body protein FlaE VM_19740 PF00460 Flagella basal body rod protein VM_19740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_19745 PF00460 Flagella basal body rod protein VM_19745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_19750 PF02107 VM_19750 VM_19755 PF02119 VM_19755 VM_19760 PF10135 VM_19760 VM_19765 PF00460 Flagella basal body rod protein VM_19765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VM_19770 PF00669 Bacterial flagellin N-terminal helical region VM_19785 PF00691 OmpA family VM_19785 PF13677 VM_19785 VM_19790 PF01618 VM_19790 VM_19795 PF04542 Sigma-70 region 2 VM_19795 PF04545 Sigma-70, region 4 VM_19800 PF03748 VM_19800 VM_19805 PF02120 Flagellar hook-length control protein FliK VM_19815 PF02561 Flagellar protein FliS VM_19820 PF02465 VM_19820 VM_19820 PF07195 VM_19820 VM_19820 PF07196 Flagellin hook IN motif VM_19830 PF00669 Bacterial flagellin N-terminal helical region VM_19830 PF00700 Bacterial flagellin C-terminal helical region VM_19835 PF00771 FHIPEP family VM_19840 PF01312 FlhB HrpN YscU SpaS Family VM_19845 PF01311 VM_19845 VM_19850 PF01313 VM_19850 VM_19855 PF00813 VM_19855 VM_19860 PF01052 Surface presentation of antigens (SPOA) VM_19865 PF01052 Surface presentation of antigens (SPOA) VM_19870 PF00691 OmpA family VM_19875 PF00158 Sigma-54 interaction domain VM_19875 PF02954 Bacterial regulatory protein, Fis family VM_19880 PF02049 VM_19880 VM_19885 PF01514 Secretory protein of YscJ/FliF family VM_19885 PF08345 VM_19885 VM_19890 PF01706 FliG C-terminal domain VM_19890 PF14841 FliG middle domain VM_19890 PF14842 FliG N-terminal domain VM_19895 PF02108 VM_19895 VM_19900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VM_19910 PF00665 Integrase core domain VM_19910 PF13551 Winged helix-turn helix VM_19915 PF01116 Fructose-bisphosphate aldolase class-II VM_19920 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VM_19925 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VM_19925 PF02378 Phosphotransferase system, EIIC VM_19930 PF00294 pfkB family carbohydrate kinase VM_19935 PF00455 VM_19935 VM_19935 PF08220 DeoR-like helix-turn-helix domain VM_19940 PF13640 2OG-Fe(II) oxygenase superfamily VM_19945 PF07073 Modulator of Rho-dependent transcription termination (ROF) VM_19950 PF13302 Acetyltransferase (GNAT) domain VM_19955 PF00005 ABC transporter VM_19955 PF08402 TOBE domain VM_19960 PF13416 Bacterial extracellular solute-binding protein VM_19965 PF00528 Binding-protein-dependent transport system inner membrane component VM_19965 PF14785 Maltose transport system permease protein MalF P2 domain VM_19970 PF00528 Binding-protein-dependent transport system inner membrane component VM_19985 PF00149 Calcineurin-like phosphoesterase VM_19985 PF02872 5'-nucleotidase, C-terminal domain VM_19990 PF03061 Thioesterase superfamily VM_19995 PF00455 VM_19995 VM_19995 PF08220 DeoR-like helix-turn-helix domain VM_20000 PF00990 GGDEF domain VM_20000 PF08448 PAS fold VM_20005 PF00892 EamA-like transporter family VM_20010 PF12833 Helix-turn-helix domain VM_20015 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VM_20025 PF00313 'Cold-shock' DNA-binding domain VM_20030 PF07690 Major Facilitator Superfamily VM_20035 PF00005 ABC transporter VM_20035 PF12848 ABC transporter VM_20040 PF05661 VM_20040 VM_20045 PF05958 tRNA (Uracil-5-)-methyltransferase VM_20055 PF05656 VM_20055 VM_20060 PF12833 Helix-turn-helix domain VM_20065 PF01979 Amidohydrolase family VM_20070 PF00111 2Fe-2S iron-sulfur cluster binding domain VM_20070 PF00175 Oxidoreductase NAD-binding domain VM_20070 PF00970 Oxidoreductase FAD-binding domain VM_20070 PF03473 MOSC domain VM_20070 PF03476 MOSC N-terminal beta barrel domain VM_20075 PF01609 Transposase DDE domain VM_20075 PF02281 Transposase Tn5 dimerisation domain VM_20075 PF14706 Transposase DNA-binding VM_20080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_20080 PF00672 HAMP domain VM_20080 PF02743 Cache domain VM_20090 PF01553 Acyltransferase VM_20100 PF04175 Protein of unknown function (DUF406) VM_20105 PF00440 Bacterial regulatory proteins, tetR family VM_20110 PF00005 ABC transporter VM_20115 PF01032 FecCD transport family VM_20120 PF01497 Periplasmic binding protein VM_20125 PF02472 Biopolymer transport protein ExbD/TolR VM_20130 PF01618 VM_20130 VM_20135 PF03544 Gram-negative bacterial TonB protein C-terminal VM_20140 PF04055 Radical SAM superfamily VM_20145 PF06228 Haem utilisation ChuX/HutX VM_20150 PF01243 Pyridoxamine 5'-phosphate oxidase VM_20155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_20160 PF00034 Cytochrome c VM_20160 PF03150 Di-haem cytochrome c peroxidase VM_20165 PF05651 VM_20165 VM_20165 PF13556 PucR C-terminal helix-turn-helix domain VM_20170 PF02447 VM_20170 VM_20175 PF02595 Glycerate kinase family VM_20195 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VM_20195 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VM_20200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VM_20205 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VM_20205 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VM_20215 PF07361 Cytochrome b562 VM_20220 PF00072 Response regulator receiver domain VM_20220 PF00512 His Kinase A (phospho-acceptor) domain VM_20220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VM_20220 PF03924 CHASE domain VM_20220 PF13426 PAS domain VM_20225 PF00072 Response regulator receiver domain VM_20225 PF00990 GGDEF domain VM_20235 PF03929 VM_20235 VM_20240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VM_20245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_20245 PF03466 LysR substrate binding domain VM_20250 PF01053 Cys/Met metabolism PLP-dependent enzyme VM_20255 PF00155 Aminotransferase class I and II VM_20260 PF00107 Zinc-binding dehydrogenase VM_20260 PF08240 Alcohol dehydrogenase GroES-like domain VM_20265 PF08908 VM_20265 VM_20270 PF01717 Cobalamin-independent synthase, Catalytic domain VM_20280 PF00665 Integrase core domain VM_20280 PF13551 Winged helix-turn helix VM_20290 PF01022 Bacterial regulatory protein, arsR family VM_20300 PF00768 D-alanyl-D-alanine carboxypeptidase VM_20310 PF03922 OmpW family VM_20330 PF00128 Alpha amylase, catalytic domain VM_20350 PF02687 VM_20350 VM_20350 PF12704 MacB-like periplasmic core domain VM_20355 PF17131 VM_20355 VM_20365 PF06580 VM_20365 VM_20370 PF00072 Response regulator receiver domain VM_20370 PF04397 LytTr DNA-binding domain VM_20380 PF00990 GGDEF domain VM_20385 PF13520 Amino acid permease VM_20390 PF01810 VM_20390 VM_20400 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VM_20400 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VM_20410 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VM_20415 PF11168 VM_20415 VM_20420 PF13533 Biotin-lipoyl like VM_20420 PF16576 VM_20420 VM_20430 PF02566 OsmC-like protein VM_20435 PF01595 VM_20435 VM_20435 PF03471 Transporter associated domain VM_20440 PF00132 Bacterial transferase hexapeptide (six repeats) VM_20440 PF12464 Maltose acetyltransferase VM_20440 PF14602 Hexapeptide repeat of succinyl-transferase VM_20445 PF00892 EamA-like transporter family VM_20450 PF13489 Methyltransferase domain VM_20460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VM_20460 PF03466 LysR substrate binding domain VM_20465 PF00501 AMP-binding enzyme VM_20465 PF13193 AMP-binding enzyme C-terminal domain VM_20470 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VM_20475 PF01329 Pterin 4 alpha carbinolamine dehydratase VM_20480 PF13505 Outer membrane protein beta-barrel domain VM_20485 PF01554 MatE VM_20490 PF02311 AraC-like ligand binding domain VM_20490 PF12833 Helix-turn-helix domain VM_20495 PF06445 GyrI-like small molecule binding domain VM_20495 PF12833 Helix-turn-helix domain VM_20500 PF00583 Acetyltransferase (GNAT) family VM_20505 PF00202 Aminotransferase class-III VM_20510 PF06339 VM_20510 VM_20515 PF00696 Amino acid kinase family VM_20520 PF01769 Divalent cation transporter VM_20520 PF03448 MgtE intracellular N domain VM_20525 PF00924 Mechanosensitive ion channel VM_20530 PF13533 Biotin-lipoyl like VM_20540 PF12625 VM_20540 VM_20540 PF12833 Helix-turn-helix domain VM_20545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VM_20550 PF00491 Arginase family VM_20560 PF03573 outer membrane porin, OprD family VM_20565 PF04962 KduI/IolB family VM_20570 PF00294 pfkB family carbohydrate kinase VM_20575 PF01081 KDPG and KHG aldolase VM_20580 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VM_20580 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VM_20585 PF13561 Enoyl-(Acyl carrier protein) reductase VM_20590 PF07470 Glycosyl Hydrolase Family 88 VM_20595 PF09508 Lacto-N-biose phosphorylase VM_20595 PF17385 VM_20595 VM_20595 PF17386 VM_20595 VM_20600 PF01797 Transposase IS200 like VM_20610 PF00990 GGDEF domain VM_20615 PF00884 Sulfatase VM_20615 PF16385 VM_20615 VM_20620 PF00884 Sulfatase VM_20625 PF04055 Radical SAM superfamily VM_20625 PF13186 Iron-sulfur cluster-binding domain VM_20630 PF10022 VM_20630 VM_20635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VM_20640 PF00528 Binding-protein-dependent transport system inner membrane component VM_20645 PF00528 Binding-protein-dependent transport system inner membrane component VM_20645 PF12911 VM_20645 VM_20650 PF00005 ABC transporter VM_20650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VM_20655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VM_20660 PF01614 Bacterial transcriptional regulator VM_20660 PF09339 IclR helix-turn-helix domain VM_20665 PF00768 D-alanyl-D-alanine carboxypeptidase VM_20665 PF07943 Penicillin-binding protein 5, C-terminal domain VM_20680 PF00194 Eukaryotic-type carbonic anhydrase VM_20685 PF13472 GDSL-like Lipase/Acylhydrolase family VM_20690 PF02347 Glycine cleavage system P-protein VM_20695 PF01597 Glycine cleavage H-protein VM_20700 PF00464 Serine hydroxymethyltransferase VM_20705 PF01381 Helix-turn-helix VM_20705 PF07883 Cupin domain VM_20710 PF01571 Aminomethyltransferase folate-binding domain VM_20710 PF08669 Glycine cleavage T-protein C-terminal barrel domain VM_20715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VM_20715 PF02824 TGS domain VM_20715 PF03129 Anticodon binding domain VM_20715 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VM_20720 PF00707 Translation initiation factor IF-3, C-terminal domain VM_20720 PF05198 Translation initiation factor IF-3, N-terminal domain VM_20725 PF01632 Ribosomal protein L35 VM_20730 PF00453 Ribosomal protein L20 VM_20735 PF00589 Phage integrase family VM_20735 PF13495 Phage integrase, N-terminal SAM-like domain VM_20740 PF13302 Acetyltransferase (GNAT) domain VM_20745 PF13673 Acetyltransferase (GNAT) domain VM_20765 PF04875 VM_20765 VM_20780 PF02566 OsmC-like protein VM_20785 PF01844 HNH endonuclease VM_20800 PF00076 RNA recognition motif