VM_00005 SM00382 ATPases associated with a variety of cellular activities VM_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain VM_00010 SM00480 DNA polymerase III beta subunit VM_00020 SM00387 Histidine kinase-like ATPases VM_00020 SM00433 TopoisomeraseII VM_00080 SM00829 Enoylreductase VM_00110 SM00382 ATPases associated with a variety of cellular activities VM_00115 SM00563 Phosphate acyltransferases VM_00185 SM00257 Lysin motif VM_00210 SM01001 AIR carboxylase VM_00310 SM00876 Biotin and Thiamin Synthesis associated domain VM_00335 SM00344 helix_turn_helix ASNC type VM_00340 SM00052 Putative diguanylate phosphodiesterase VM_00340 SM00091 PAS domain VM_00340 SM00267 diguanylate cyclase VM_00385 SM00091 PAS domain VM_00385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_00445 SM00563 Phosphate acyltransferases VM_00475 SM00450 Rhodanese Homology Domain VM_00490 SM01004 Delta-aminolevulinic acid dehydratase VM_00500 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VM_00500 SM00474 3'-5' exonuclease VM_00500 SM00475 5'-3' exonuclease VM_00500 SM00482 DNA polymerase A domain VM_00535 SM00729 Elongator protein 3, MiaB family, Radical SAM VM_00570 SM01219 VM_00570 VM_00605 SM00052 Putative diguanylate phosphodiesterase VM_00605 SM00267 diguanylate cyclase VM_00605 SM00897 FIST N domain VM_00605 SM01204 VM_00605 VM_00610 SM01144 VM_00610 VM_00680 SM00382 ATPases associated with a variety of cellular activities VM_00680 SM00962 SRP54-type protein, GTPase domain VM_00680 SM00963 SRP54-type protein, helical bundle domain VM_00685 SM00382 ATPases associated with a variety of cellular activities VM_00740 SM00360 RNA recognition motif VM_00805 SM00052 Putative diguanylate phosphodiesterase VM_00805 SM00267 diguanylate cyclase VM_00810 SM00382 ATPases associated with a variety of cellular activities VM_00810 SM00448 cheY-homologous receiver domain VM_00815 SM00091 PAS domain VM_00815 SM00387 Histidine kinase-like ATPases VM_00815 SM00388 His Kinase A (phosphoacceptor) domain VM_00825 SM01230 VM_00825 VM_00875 SM00363 S4 RNA-binding domain VM_00890 SM00382 ATPases associated with a variety of cellular activities VM_00970 SM00316 Ribosomal protein S1-like RNA-binding domain VM_00970 SM00732 Likely ribonuclease with RNase H fold. VM_01035 SM00974 VM_01035 VM_01060 SM00530 Helix-turn-helix XRE-family like proteins VM_01070 SM00487 DEAD-like helicases superfamily VM_01105 SM00421 helix_turn_helix, Lux Regulon VM_01115 SM00382 ATPases associated with a variety of cellular activities VM_01130 SM00495 Chitin-binding domain type 3 VM_01135 SM00448 cheY-homologous receiver domain VM_01135 SM00862 Transcriptional regulatory protein, C terminal VM_01140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_01140 SM00387 Histidine kinase-like ATPases VM_01140 SM00388 His Kinase A (phosphoacceptor) domain VM_01150 SM00487 DEAD-like helicases superfamily VM_01150 SM00490 helicase superfamily c-terminal domain VM_01155 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VM_01155 SM00954 Region found in RelA / SpoT proteins VM_01160 SM01409 VM_01160 VM_01165 SM00072 Guanylate kinase homologues. VM_01465 SM01091 Transporter associated domain VM_01470 SM00421 helix_turn_helix, Lux Regulon VM_01470 SM00448 cheY-homologous receiver domain VM_01505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_01505 SM00387 Histidine kinase-like ATPases VM_01505 SM00388 His Kinase A (phosphoacceptor) domain VM_01510 SM00448 cheY-homologous receiver domain VM_01510 SM00862 Transcriptional regulatory protein, C terminal VM_01560 SM00919 Malic enzyme, NAD binding domain VM_01560 SM01274 VM_01560 VM_01570 SM00487 DEAD-like helicases superfamily VM_01570 SM00490 helicase superfamily c-terminal domain VM_01575 SM00354 helix_turn _helix lactose operon repressor VM_01590 SM00382 ATPases associated with a variety of cellular activities VM_01590 SM01086 C-terminal, D2-small domain, of ClpB protein VM_01635 SM00883 Chaperonin 10 Kd subunit VM_01655 SM00841 Elongation factor P, C-terminal VM_01655 SM01185 VM_01655 VM_01685 SM00450 Rhodanese Homology Domain VM_01700 SM00971 Serine acetyltransferase, N-terminal VM_01720 SM00859 Semialdehyde dehydrogenase, NAD binding domain VM_01785 SM00965 Secretin and TonB N terminus short domain VM_01835 SM00729 Elongator protein 3, MiaB family, Radical SAM VM_01865 SM01150 VM_01865 VM_01870 SM00100 Cyclic nucleotide-monophosphate binding domain VM_01870 SM00419 helix_turn_helix, cAMP Regulatory protein VM_01895 SM00382 ATPases associated with a variety of cellular activities VM_01925 SM00788 Adenylosuccinate synthetase VM_01930 SM00671 Sel1-like repeats. VM_01940 SM00316 Ribosomal protein S1-like RNA-binding domain VM_01940 SM00357 Cold shock protein domain VM_01940 SM00955 VM_01940 VM_01945 SM00967 RNA 2'-O ribose methyltransferase substrate binding VM_01950 SM01403 VM_01950 VM_01970 SM01382 VM_01970 VM_01970 SM01383 VM_01970 VM_01985 SM00322 K homology RNA-binding domain VM_02005 SM01374 VM_02005 VM_02010 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VM_02075 SM00363 S4 RNA-binding domain VM_02075 SM01390 VM_02075 VM_02080 SM00662 RNA polymerases D VM_02115 SM00487 DEAD-like helicases superfamily VM_02115 SM00490 helicase superfamily c-terminal domain VM_02165 SM00382 ATPases associated with a variety of cellular activities VM_02250 SM00382 ATPases associated with a variety of cellular activities VM_02265 SM00924 MgtE intracellular N domain VM_02295 SM00382 ATPases associated with a variety of cellular activities VM_02315 SM00116 Domain in cystathionine beta-synthase and other proteins. VM_02330 SM00382 ATPases associated with a variety of cellular activities VM_02365 SM00563 Phosphate acyltransferases VM_02390 SM00670 Large family of predicted nucleotide-binding domains VM_02400 SM00487 DEAD-like helicases superfamily VM_02400 SM00490 helicase superfamily c-terminal domain VM_02460 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VM_02510 SM01329 VM_02510 VM_02515 SM00917 LeuA allosteric (dimerisation) domain VM_02525 SM00014 Acid phosphatase homologues VM_02655 SM00358 Double-stranded RNA binding motif VM_02655 SM00535 Ribonuclease III family VM_02695 SM00073 Histidine Phosphotransfer domain VM_02695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_02695 SM00387 Histidine kinase-like ATPases VM_02695 SM00388 His Kinase A (phosphoacceptor) domain VM_02695 SM00448 cheY-homologous receiver domain VM_02705 SM00954 Region found in RelA / SpoT proteins VM_02725 SM01192 VM_02725 VM_02725 SM01193 VM_02725 VM_02750 SM00382 ATPases associated with a variety of cellular activities VM_02760 SM00287 Bacterial SH3 domain homologues VM_02775 SM00880 VM_02775 VM_02775 SM01118 VM_02775 VM_02785 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_02785 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_02825 SM00387 Histidine kinase-like ATPases VM_02825 SM00433 TopoisomeraseII VM_02830 SM00434 DNA Topoisomerase IV VM_02875 SM00644 VM_02875 VM_02900 SM01131 VM_02900 VM_02910 SM00345 helix_turn_helix gluconate operon transcriptional repressor VM_02910 SM00895 VM_02910 VM_02990 SM00842 Cell division protein FtsA VM_02995 SM00864 Tubulin/FtsZ family, GTPase domain VM_02995 SM00865 Tubulin/FtsZ family, C-terminal domain VM_03010 SM00957 SecA DEAD-like domain VM_03010 SM00958 SecA preprotein cross-linking domain VM_03025 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VM_03030 SM00851 MGS-like domain VM_03030 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VM_03090 SM00729 Elongator protein 3, MiaB family, Radical SAM VM_03095 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VM_03095 SM00091 PAS domain VM_03095 SM00267 diguanylate cyclase VM_03100 SM00073 Histidine Phosphotransfer domain VM_03100 SM00091 PAS domain VM_03100 SM00387 Histidine kinase-like ATPases VM_03100 SM00388 His Kinase A (phosphoacceptor) domain VM_03100 SM00448 cheY-homologous receiver domain VM_03105 SM00448 cheY-homologous receiver domain VM_03105 SM00862 Transcriptional regulatory protein, C terminal VM_03145 SM00518 AP endonuclease family 2 VM_03150 SM00986 Uracil DNA glycosylase superfamily VM_03150 SM00987 UreE urease accessory protein, C-terminal domain VM_03195 SM01133 VM_03195 VM_03200 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VM_03230 SM00382 ATPases associated with a variety of cellular activities VM_03235 SM00838 Elongation factor G C-terminus VM_03235 SM00889 Elongation factor G, domain IV VM_03265 SM01038 Beta galactosidase small chain VM_03270 SM00354 helix_turn _helix lactose operon repressor VM_03365 SM00925 MltA specific insert domain VM_03400 SM00464 Found in ATP-dependent protease La (LON) VM_03450 SM00900 VM_03450 VM_03545 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VM_03600 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VM_03645 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VM_03655 SM00935 Outer membrane protein (OmpH-like) VM_03685 SM00481 DNA polymerase alpha chain like domain VM_03695 SM00977 TilS substrate C-terminal domain VM_03705 SM00938 Nitrogen regulatory protein P-II VM_03715 SM00257 Lysin motif VM_03720 SM00849 Metallo-beta-lactamase superfamily VM_03735 SM00479 VM_03735 VM_03775 SM00363 S4 RNA-binding domain VM_03780 SM00463 Small MutS-related domain VM_03800 SM01081 Putative carbohydrate binding domain VM_03860 SM00858 VM_03860 VM_03865 SM00260 Two component signalling adaptor domain VM_03865 SM00448 cheY-homologous receiver domain VM_03870 SM00138 Methyltransferase, chemotaxis proteins VM_03915 SM00047 Lysozyme subfamily 2 VM_04030 SM01400 VM_04030 VM_04050 SM00937 VM_04050 VM_04110 SM00028 Tetratricopeptide repeats VM_04125 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_04125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_04185 SM01130 VM_04185 VM_04270 SM00382 ATPases associated with a variety of cellular activities VM_04275 SM00091 PAS domain VM_04275 SM00387 Histidine kinase-like ATPases VM_04275 SM00388 His Kinase A (phosphoacceptor) domain VM_04280 SM00382 ATPases associated with a variety of cellular activities VM_04280 SM00448 cheY-homologous receiver domain VM_04305 SM00382 ATPases associated with a variety of cellular activities VM_04360 SM00463 Small MutS-related domain VM_04405 SM00825 Beta-ketoacyl synthase VM_04415 SM00859 Semialdehyde dehydrogenase, NAD binding domain VM_04510 SM00861 Transketolase, pyrimidine binding domain VM_04525 SM00881 CoA binding domain VM_04535 SM00382 ATPases associated with a variety of cellular activities VM_04545 SM00342 helix_turn_helix, arabinose operon control protein VM_04550 SM00899 VM_04550 VM_04575 SM00836 DALR anticodon binding domain VM_04575 SM01016 Arginyl tRNA synthetase N terminal dom VM_04590 SM00855 Phosphoglycerate mutase family VM_04600 SM00382 ATPases associated with a variety of cellular activities VM_04600 SM00962 SRP54-type protein, GTPase domain VM_04615 SM00448 cheY-homologous receiver domain VM_04625 SM00073 Histidine Phosphotransfer domain VM_04625 SM00260 Two component signalling adaptor domain VM_04625 SM00387 Histidine kinase-like ATPases VM_04625 SM01231 VM_04625 VM_04630 SM00448 cheY-homologous receiver domain VM_04640 SM00260 Two component signalling adaptor domain VM_04645 SM00260 Two component signalling adaptor domain VM_04655 SM00382 ATPases associated with a variety of cellular activities VM_04725 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VM_04725 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VM_04725 SM00493 VM_04725 VM_04735 SM00342 helix_turn_helix, arabinose operon control protein VM_04790 SM00859 Semialdehyde dehydrogenase, NAD binding domain VM_04820 SM00316 Ribosomal protein S1-like RNA-binding domain VM_04830 SM00363 S4 RNA-binding domain VM_04860 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VM_04865 SM00822 VM_04865 VM_04875 SM00825 Beta-ketoacyl synthase VM_04940 SM00260 Two component signalling adaptor domain VM_04940 SM00448 cheY-homologous receiver domain VM_04985 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VM_05005 SM00870 VM_05005 VM_05030 SM00487 DEAD-like helicases superfamily VM_05030 SM00491 VM_05030 VM_05060 SM00474 3'-5' exonuclease VM_05075 SM01144 VM_05075 VM_05080 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VM_05085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VM_05115 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VM_05130 SM00530 Helix-turn-helix XRE-family like proteins VM_05135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_05135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_05140 SM00563 Phosphate acyltransferases VM_05150 SM00978 VM_05150 VM_05200 SM00495 Chitin-binding domain type 3 VM_05200 SM00636 VM_05200 VM_05230 SM00014 Acid phosphatase homologues VM_05235 SM00495 Chitin-binding domain type 3 VM_05245 SM00563 Phosphate acyltransferases VM_05260 SM00052 Putative diguanylate phosphodiesterase VM_05260 SM00267 diguanylate cyclase VM_05295 SM00382 ATPases associated with a variety of cellular activities VM_05295 SM00448 cheY-homologous receiver domain VM_05300 SM00387 Histidine kinase-like ATPases VM_05300 SM00388 His Kinase A (phosphoacceptor) domain VM_05320 SM00382 ATPases associated with a variety of cellular activities VM_05320 SM00994 ClpX C4-type zinc finger VM_05320 SM01086 C-terminal, D2-small domain, of ClpB protein VM_05325 SM00382 ATPases associated with a variety of cellular activities VM_05325 SM00464 Found in ATP-dependent protease La (LON) VM_05330 SM00411 bacterial (prokaryotic) histone like domain VM_05340 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VM_05345 SM01321 VM_05345 VM_05355 SM00316 Ribosomal protein S1-like RNA-binding domain VM_05360 SM00411 bacterial (prokaryotic) histone like domain VM_05370 SM00028 Tetratricopeptide repeats VM_05375 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VM_05380 SM00387 Histidine kinase-like ATPases VM_05380 SM00388 His Kinase A (phosphoacceptor) domain VM_05380 SM00448 cheY-homologous receiver domain VM_05445 SM00382 ATPases associated with a variety of cellular activities VM_05445 SM00448 cheY-homologous receiver domain VM_05505 SM00382 ATPases associated with a variety of cellular activities VM_05545 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VM_05545 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VM_05550 SM00344 helix_turn_helix ASNC type VM_05555 SM00843 VM_05555 VM_05570 SM00345 helix_turn_helix gluconate operon transcriptional repressor VM_05630 SM00487 DEAD-like helicases superfamily VM_05630 SM00490 helicase superfamily c-terminal domain VM_05630 SM00982 VM_05630 VM_05630 SM01058 CarD-like/TRCF domain VM_05645 SM00382 ATPases associated with a variety of cellular activities VM_05660 SM00849 Metallo-beta-lactamase superfamily VM_05665 SM00382 ATPases associated with a variety of cellular activities VM_05690 SM00387 Histidine kinase-like ATPases VM_05695 SM00448 cheY-homologous receiver domain VM_05695 SM00862 Transcriptional regulatory protein, C terminal VM_05715 SM00763 PrkA AAA domain VM_05735 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_05735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_05755 SM00382 ATPases associated with a variety of cellular activities VM_05760 SM00062 Bacterial periplasmic substrate-binding proteins VM_05760 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VM_05780 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_05780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_05800 SM00491 VM_05800 VM_05815 SM00052 Putative diguanylate phosphodiesterase VM_05830 SM00840 VM_05830 VM_05840 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VM_05845 SM00382 ATPases associated with a variety of cellular activities VM_05900 SM00028 Tetratricopeptide repeats VM_05915 SM00387 Histidine kinase-like ATPases VM_05915 SM00388 His Kinase A (phosphoacceptor) domain VM_05915 SM00448 cheY-homologous receiver domain VM_05935 SM00342 helix_turn_helix, arabinose operon control protein VM_05955 SM00345 helix_turn_helix gluconate operon transcriptional repressor VM_06015 SM00954 Region found in RelA / SpoT proteins VM_06055 SM00470 ParB-like nuclease domain VM_06065 SM00635 Bacterial Ig-like domain 2 VM_06100 SM00710 Parallel beta-helix repeats VM_06110 SM00342 helix_turn_helix, arabinose operon control protein VM_06135 SM00858 VM_06135 VM_06185 SM00028 Tetratricopeptide repeats VM_06225 SM00052 Putative diguanylate phosphodiesterase VM_06275 SM00316 Ribosomal protein S1-like RNA-binding domain VM_06305 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VM_06305 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VM_06305 SM00493 VM_06305 VM_06340 SM00354 helix_turn _helix lactose operon repressor VM_06350 SM00448 cheY-homologous receiver domain VM_06350 SM00862 Transcriptional regulatory protein, C terminal VM_06385 SM00344 helix_turn_helix ASNC type VM_06395 SM00729 Elongator protein 3, MiaB family, Radical SAM VM_06400 SM00052 Putative diguanylate phosphodiesterase VM_06400 SM00091 PAS domain VM_06450 SM00052 Putative diguanylate phosphodiesterase VM_06450 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VM_06450 SM00267 diguanylate cyclase VM_06520 SM01131 VM_06520 VM_06535 SM00382 ATPases associated with a variety of cellular activities VM_06540 SM00382 ATPases associated with a variety of cellular activities VM_06560 SM00382 ATPases associated with a variety of cellular activities VM_06580 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase VM_06595 SM00155 Phospholipase D. Active site motifs. VM_06615 SM00382 ATPases associated with a variety of cellular activities VM_06650 SM00382 ATPases associated with a variety of cellular activities VM_06670 SM00116 Domain in cystathionine beta-synthase and other proteins. VM_06675 SM00062 Bacterial periplasmic substrate-binding proteins VM_06675 SM00387 Histidine kinase-like ATPases VM_06675 SM00388 His Kinase A (phosphoacceptor) domain VM_06675 SM00448 cheY-homologous receiver domain VM_06680 SM00052 Putative diguanylate phosphodiesterase VM_06680 SM00421 helix_turn_helix, Lux Regulon VM_06680 SM00448 cheY-homologous receiver domain VM_06685 SM00448 cheY-homologous receiver domain VM_06720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_06720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_06750 SM00191 Integrin alpha (beta-propellor repeats). VM_06760 SM00387 Histidine kinase-like ATPases VM_06765 SM00448 cheY-homologous receiver domain VM_06765 SM00862 Transcriptional regulatory protein, C terminal VM_06775 SM00487 DEAD-like helicases superfamily VM_06775 SM00490 helicase superfamily c-terminal domain VM_06780 SM00363 S4 RNA-binding domain VM_06805 SM00382 ATPases associated with a variety of cellular activities VM_06825 SM01321 VM_06825 VM_06900 SM00028 Tetratricopeptide repeats VM_06900 SM00386 HAT (Half-A-TPR) repeats VM_06940 SM00387 Histidine kinase-like ATPases VM_06945 SM00448 cheY-homologous receiver domain VM_06955 SM00260 Two component signalling adaptor domain VM_06955 SM00448 cheY-homologous receiver domain VM_06970 SM00267 diguanylate cyclase VM_07005 SM00812 Alpha-L-fucosidase VM_07010 SM01276 VM_07010 VM_07020 SM01060 VM_07020 VM_07025 SM00248 ankyrin repeats VM_07035 SM01022 VM_07035 VM_07075 SM00382 ATPases associated with a variety of cellular activities VM_07115 SM00382 ATPases associated with a variety of cellular activities VM_07140 SM00849 Metallo-beta-lactamase superfamily VM_07160 SM00354 helix_turn _helix lactose operon repressor VM_07180 SM00420 helix_turn_helix, Deoxyribose operon repressor VM_07180 SM01134 VM_07180 VM_07185 SM00382 ATPases associated with a variety of cellular activities VM_07275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_07285 SM01144 VM_07285 VM_07300 SM00852 Probable molybdopterin binding domain VM_07310 SM00382 ATPases associated with a variety of cellular activities VM_07325 SM00382 ATPases associated with a variety of cellular activities VM_07325 SM00448 cheY-homologous receiver domain VM_07330 SM00387 Histidine kinase-like ATPases VM_07330 SM00388 His Kinase A (phosphoacceptor) domain VM_07335 SM00382 ATPases associated with a variety of cellular activities VM_07340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_07340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_07375 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VM_07425 SM00316 Ribosomal protein S1-like RNA-binding domain VM_07445 SM00382 ATPases associated with a variety of cellular activities VM_07455 SM00945 ProQ/FINO family VM_07460 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VM_07460 SM00245 tail specific protease VM_07495 SM00981 VM_07495 VM_07505 SM00382 ATPases associated with a variety of cellular activities VM_07545 SM00387 Histidine kinase-like ATPases VM_07545 SM00388 His Kinase A (phosphoacceptor) domain VM_07545 SM00448 cheY-homologous receiver domain VM_07550 SM00897 FIST N domain VM_07550 SM01204 VM_07550 VM_07600 SM00100 Cyclic nucleotide-monophosphate binding domain VM_07600 SM00419 helix_turn_helix, cAMP Regulatory protein VM_07630 SM00382 ATPases associated with a variety of cellular activities VM_07660 SM00421 helix_turn_helix, Lux Regulon VM_07660 SM00448 cheY-homologous receiver domain VM_07665 SM00897 FIST N domain VM_07665 SM01204 VM_07665 VM_07670 SM00387 Histidine kinase-like ATPases VM_07670 SM00388 His Kinase A (phosphoacceptor) domain VM_07670 SM00448 cheY-homologous receiver domain VM_07675 SM00267 diguanylate cyclase VM_07735 SM00342 helix_turn_helix, arabinose operon control protein VM_07800 SM00347 helix_turn_helix multiple antibiotic resistance protein VM_07805 SM00903 Flavin reductase like domain VM_07855 SM00342 helix_turn_helix, arabinose operon control protein VM_07860 SM00487 DEAD-like helicases superfamily VM_07860 SM00490 helicase superfamily c-terminal domain VM_07865 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VM_07865 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_07870 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_07870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_07930 SM00382 ATPases associated with a variety of cellular activities VM_07930 SM00487 DEAD-like helicases superfamily VM_07930 SM00490 helicase superfamily c-terminal domain VM_07930 SM00847 Helicase associated domain (HA2) Add an annotation VM_07955 SM00479 VM_07955 VM_07960 SM00267 diguanylate cyclase VM_07960 SM01079 VM_07960 VM_07980 SM00267 diguanylate cyclase VM_07990 SM00267 diguanylate cyclase VM_08005 SM00028 Tetratricopeptide repeats VM_08005 SM00267 diguanylate cyclase VM_08030 SM00062 Bacterial periplasmic substrate-binding proteins VM_08045 SM00382 ATPases associated with a variety of cellular activities VM_08065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_08070 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VM_08075 SM00267 diguanylate cyclase VM_08085 SM00073 Histidine Phosphotransfer domain VM_08085 SM00091 PAS domain VM_08085 SM00387 Histidine kinase-like ATPases VM_08085 SM00388 His Kinase A (phosphoacceptor) domain VM_08085 SM00448 cheY-homologous receiver domain VM_08090 SM00448 cheY-homologous receiver domain VM_08090 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VM_08155 SM00345 helix_turn_helix gluconate operon transcriptional repressor VM_08155 SM00895 VM_08155 VM_08160 SM00062 Bacterial periplasmic substrate-binding proteins VM_08160 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VM_08180 SM00267 diguanylate cyclase VM_08180 SM01079 VM_08180 VM_08190 SM00382 ATPases associated with a variety of cellular activities VM_08220 SM00448 cheY-homologous receiver domain VM_08220 SM00862 Transcriptional regulatory protein, C terminal VM_08225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_08225 SM00387 Histidine kinase-like ATPases VM_08225 SM00388 His Kinase A (phosphoacceptor) domain VM_08240 SM00448 cheY-homologous receiver domain VM_08245 SM00387 Histidine kinase-like ATPases VM_08255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_08255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_08260 SM01005 Alanine racemase, C-terminal domain VM_08290 SM00091 PAS domain VM_08290 SM00382 ATPases associated with a variety of cellular activities VM_08340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_08340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_08360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_08360 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VM_08370 SM00100 Cyclic nucleotide-monophosphate binding domain VM_08370 SM00116 Domain in cystathionine beta-synthase and other proteins. VM_08375 SM00479 VM_08375 VM_08380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_08380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_08395 SM00354 helix_turn _helix lactose operon repressor VM_08425 SM00495 Chitin-binding domain type 3 VM_08435 SM00347 helix_turn_helix multiple antibiotic resistance protein VM_08440 SM00421 helix_turn_helix, Lux Regulon VM_08440 SM00448 cheY-homologous receiver domain VM_08445 SM00387 Histidine kinase-like ATPases VM_08445 SM01049 VM_08445 VM_08475 SM00849 Metallo-beta-lactamase superfamily VM_08530 SM00342 helix_turn_helix, arabinose operon control protein VM_08535 SM00450 Rhodanese Homology Domain VM_08540 SM00357 Cold shock protein domain VM_08590 SM00434 DNA Topoisomerase IV VM_08620 SM00852 Probable molybdopterin binding domain VM_08635 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_08635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_08635 SM01049 VM_08635 VM_08650 SM00382 ATPases associated with a variety of cellular activities VM_08665 SM00855 Phosphoglycerate mutase family VM_08695 SM00479 VM_08695 VM_08740 SM00411 bacterial (prokaryotic) histone like domain VM_08745 SM00873 B3/4 domain VM_08745 SM00874 tRNA synthetase B5 domain VM_08745 SM00896 Ferredoxin-fold anticodon binding domain VM_08790 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VM_08790 SM00465 GIY-YIG type nucleases (URI domain) VM_08795 SM00421 helix_turn_helix, Lux Regulon VM_08795 SM00448 cheY-homologous receiver domain VM_08800 SM00486 DNA polymerase type-B family VM_08805 SM00052 Putative diguanylate phosphodiesterase VM_08815 SM00841 Elongation factor P, C-terminal VM_08815 SM01185 VM_08815 VM_08830 SM00345 helix_turn_helix gluconate operon transcriptional repressor VM_08830 SM00866 VM_08830 VM_08860 SM00020 Trypsin-like serine protease VM_08890 SM00671 Sel1-like repeats. VM_08915 SM00919 Malic enzyme, NAD binding domain VM_08915 SM01274 VM_08915 VM_08930 SM00267 diguanylate cyclase VM_08950 SM00382 ATPases associated with a variety of cellular activities VM_08955 SM00382 ATPases associated with a variety of cellular activities VM_08960 SM00363 S4 RNA-binding domain VM_08970 SM00481 DNA polymerase alpha chain like domain VM_09015 SM01321 VM_09015 VM_09070 SM00100 Cyclic nucleotide-monophosphate binding domain VM_09070 SM00387 Histidine kinase-like ATPases VM_09075 SM00448 cheY-homologous receiver domain VM_09140 SM00382 ATPases associated with a variety of cellular activities VM_09140 SM01086 C-terminal, D2-small domain, of ClpB protein VM_09150 SM00357 Cold shock protein domain VM_09155 SM01321 VM_09155 VM_09215 SM00528 Domain in histone-like proteins of HNS family VM_09300 SM00729 Elongator protein 3, MiaB family, Radical SAM VM_09300 SM00876 Biotin and Thiamin Synthesis associated domain VM_09315 SM00382 ATPases associated with a variety of cellular activities VM_09335 SM00267 diguanylate cyclase VM_09340 SM00382 ATPases associated with a variety of cellular activities VM_09380 SM00382 ATPases associated with a variety of cellular activities VM_09385 SM00382 ATPases associated with a variety of cellular activities VM_09410 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_09410 SM00387 Histidine kinase-like ATPases VM_09415 SM00448 cheY-homologous receiver domain VM_09420 SM00052 Putative diguanylate phosphodiesterase VM_09420 SM00448 cheY-homologous receiver domain VM_09425 SM00387 Histidine kinase-like ATPases VM_09430 SM00387 Histidine kinase-like ATPases VM_09430 SM00388 His Kinase A (phosphoacceptor) domain VM_09440 SM00448 cheY-homologous receiver domain VM_09445 SM00448 cheY-homologous receiver domain VM_09450 SM00073 Histidine Phosphotransfer domain VM_09470 SM00342 helix_turn_helix, arabinose operon control protein VM_09485 SM00495 Chitin-binding domain type 3 VM_09485 SM00636 VM_09485 VM_09530 SM00420 helix_turn_helix, Deoxyribose operon repressor VM_09530 SM01134 VM_09530 VM_09535 SM00420 helix_turn_helix, Deoxyribose operon repressor VM_09535 SM01134 VM_09535 VM_09550 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VM_09555 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VM_09580 SM00347 helix_turn_helix multiple antibiotic resistance protein VM_09595 SM00382 ATPases associated with a variety of cellular activities VM_09615 SM01006 Siderophore biosynthesis protein domain VM_09640 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_09650 SM00342 helix_turn_helix, arabinose operon control protein VM_09690 SM01022 VM_09690 VM_09700 SM00974 VM_09700 VM_09755 SM00530 Helix-turn-helix XRE-family like proteins VM_09780 SM00062 Bacterial periplasmic substrate-binding proteins VM_09780 SM00267 diguanylate cyclase VM_09805 SM00344 helix_turn_helix ASNC type VM_09835 SM00493 VM_09835 VM_09845 SM00382 ATPases associated with a variety of cellular activities VM_09865 SM00448 cheY-homologous receiver domain VM_09910 SM00226 Low molecular weight phosphatase family VM_09955 SM00116 Domain in cystathionine beta-synthase and other proteins. VM_09960 SM00267 diguanylate cyclase VM_09980 SM00852 Probable molybdopterin binding domain VM_09985 SM00729 Elongator protein 3, MiaB family, Radical SAM VM_10000 SM00382 ATPases associated with a variety of cellular activities VM_10000 SM00448 cheY-homologous receiver domain VM_10005 SM00487 DEAD-like helicases superfamily VM_10005 SM00490 helicase superfamily c-terminal domain VM_10045 SM00327 von Willebrand factor (vWF) type A domain VM_10085 SM00900 VM_10085 VM_10095 SM00478 endonuclease III VM_10095 SM00525 VM_10095 VM_10120 SM00479 VM_10120 VM_10195 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VM_10215 SM00387 Histidine kinase-like ATPases VM_10220 SM00862 Transcriptional regulatory protein, C terminal VM_10255 SM00244 prohibitin homologues VM_10265 SM00422 helix_turn_helix, mercury resistance VM_10280 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VM_10280 SM00292 breast cancer carboxy-terminal domain VM_10280 SM00532 Ligase N family VM_10285 SM00771 ZipA, C-terminal domain (FtsZ-binding) VM_10325 SM00729 Elongator protein 3, MiaB family, Radical SAM VM_10340 SM00116 Domain in cystathionine beta-synthase and other proteins. VM_10340 SM01091 Transporter associated domain VM_10395 SM00936 Penicillin-binding protein 5, C-terminal domain VM_10410 SM00729 Elongator protein 3, MiaB family, Radical SAM VM_10475 SM00710 Parallel beta-helix repeats VM_10530 SM00984 UDP binding domain VM_10540 SM00226 Low molecular weight phosphatase family VM_10585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_10585 SM00387 Histidine kinase-like ATPases VM_10585 SM00388 His Kinase A (phosphoacceptor) domain VM_10590 SM00448 cheY-homologous receiver domain VM_10590 SM00862 Transcriptional regulatory protein, C terminal VM_10595 SM00642 Alpha-amylase domain VM_10605 SM00354 helix_turn _helix lactose operon repressor VM_10615 SM00382 ATPases associated with a variety of cellular activities VM_10615 SM00930 VM_10615 VM_10645 SM00028 Tetratricopeptide repeats VM_10650 SM00267 diguanylate cyclase VM_10660 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VM_10660 SM00475 5'-3' exonuclease VM_10680 SM00981 VM_10680 VM_10705 SM00861 Transketolase, pyrimidine binding domain VM_10785 SM01211 VM_10785 VM_10795 SM00062 Bacterial periplasmic substrate-binding proteins VM_10845 SM00271 DnaJ molecular chaperone homology domain VM_11180 SM00487 DEAD-like helicases superfamily VM_11250 SM00764 Citrate lyase ligase C-terminal domain VM_11275 SM00091 PAS domain VM_11275 SM00387 Histidine kinase-like ATPases VM_11280 SM00448 cheY-homologous receiver domain VM_11290 SM00052 Putative diguanylate phosphodiesterase VM_11320 SM00849 Metallo-beta-lactamase superfamily VM_11335 SM00495 Chitin-binding domain type 3 VM_11345 SM00116 Domain in cystathionine beta-synthase and other proteins. VM_11345 SM01240 VM_11345 VM_11370 SM00564 beta-propeller repeat VM_11390 SM00530 Helix-turn-helix XRE-family like proteins VM_11400 SM00562 VM_11400 VM_11425 SM00271 DnaJ molecular chaperone homology domain VM_11470 SM01323 VM_11470 VM_11490 SM00116 Domain in cystathionine beta-synthase and other proteins. VM_11495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_11495 SM01358 VM_11495 VM_11535 SM00382 ATPases associated with a variety of cellular activities VM_11565 SM00091 PAS domain VM_11565 SM00387 Histidine kinase-like ATPases VM_11565 SM00388 His Kinase A (phosphoacceptor) domain VM_11570 SM00448 cheY-homologous receiver domain VM_11570 SM00862 Transcriptional regulatory protein, C terminal VM_11640 SM00382 ATPases associated with a variety of cellular activities VM_11640 SM01086 C-terminal, D2-small domain, of ClpB protein VM_11650 SM00363 S4 RNA-binding domain VM_11665 SM00830 Chorismate mutase type II VM_11675 SM00052 Putative diguanylate phosphodiesterase VM_11675 SM00267 diguanylate cyclase VM_11695 SM00382 ATPases associated with a variety of cellular activities VM_11705 SM00830 Chorismate mutase type II VM_11720 SM00448 cheY-homologous receiver domain VM_11720 SM00850 LytTr DNA-binding domain VM_11775 SM00904 Riboflavin kinase VM_11790 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VM_11825 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VM_11835 SM00927 DNA mismatch repair enzyme MutH VM_11855 SM00382 ATPases associated with a variety of cellular activities VM_11865 SM00937 VM_11865 VM_11880 SM00487 DEAD-like helicases superfamily VM_11880 SM00490 helicase superfamily c-terminal domain VM_11890 SM00052 Putative diguanylate phosphodiesterase VM_11890 SM00267 diguanylate cyclase VM_11915 SM00052 Putative diguanylate phosphodiesterase VM_11915 SM00091 PAS domain VM_11915 SM00267 diguanylate cyclase VM_11935 SM00347 helix_turn_helix multiple antibiotic resistance protein VM_11945 SM00028 Tetratricopeptide repeats VM_11950 SM00316 Ribosomal protein S1-like RNA-binding domain VM_11950 SM00322 K homology RNA-binding domain VM_11955 SM01387 VM_11955 VM_11975 SM00316 Ribosomal protein S1-like RNA-binding domain VM_11975 SM00322 K homology RNA-binding domain VM_12015 SM00382 ATPases associated with a variety of cellular activities VM_12025 SM01103 VM_12025 VM_12045 SM00363 S4 RNA-binding domain VM_12095 SM00091 PAS domain VM_12095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_12095 SM00387 Histidine kinase-like ATPases VM_12095 SM00388 His Kinase A (phosphoacceptor) domain VM_12095 SM00448 cheY-homologous receiver domain VM_12115 SM00382 ATPases associated with a variety of cellular activities VM_12120 SM00382 ATPases associated with a variety of cellular activities VM_12140 SM01068 Putative carbohydrate binding domain VM_12150 SM00382 ATPases associated with a variety of cellular activities VM_12170 SM00938 Nitrogen regulatory protein P-II VM_12195 SM00487 DEAD-like helicases superfamily VM_12195 SM00490 helicase superfamily c-terminal domain VM_12195 SM00847 Helicase associated domain (HA2) Add an annotation VM_12240 SM00382 ATPases associated with a variety of cellular activities VM_12250 SM00947 Carbonic anhydrase VM_12285 SM00749 bacterial OsmY and nodulation domain VM_12340 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VM_12345 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VM_12370 SM00382 ATPases associated with a variety of cellular activities VM_12370 SM00962 SRP54-type protein, GTPase domain VM_12370 SM00963 SRP54-type protein, helical bundle domain VM_12380 SM01091 Transporter associated domain VM_12405 SM00829 Enoylreductase VM_12475 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VM_12485 SM00382 ATPases associated with a variety of cellular activities VM_12495 SM00382 ATPases associated with a variety of cellular activities VM_12520 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VM_12520 SM00534 ATPase domain of DNA mismatch repair MUTS family VM_12530 SM00257 Lysin motif VM_12575 SM00905 Dihydroneopterin aldolase VM_12585 SM01207 VM_12585 VM_12610 SM00400 zinc finger VM_12610 SM00493 VM_12610 VM_12610 SM00766 DNA primase DnaG DnaB-binding VM_12630 SM00954 Region found in RelA / SpoT proteins VM_12715 SM00247 Beta/gamma crystallins VM_12775 SM00382 ATPases associated with a variety of cellular activities VM_12775 SM01086 C-terminal, D2-small domain, of ClpB protein VM_12840 SM00342 helix_turn_helix, arabinose operon control protein VM_12870 SM00953 VM_12870 VM_12890 SM00482 DNA polymerase A domain VM_12925 SM00563 Phosphate acyltransferases VM_12940 SM00420 helix_turn_helix, Deoxyribose operon repressor VM_12940 SM01134 VM_12940 VM_12980 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VM_12995 SM00861 Transketolase, pyrimidine binding domain VM_13010 SM00731 SprT homologues. VM_13035 SM00732 Likely ribonuclease with RNase H fold. VM_13040 SM00363 S4 RNA-binding domain VM_13045 SM00421 helix_turn_helix, Lux Regulon VM_13075 SM01152 VM_13075 VM_13090 SM00729 Elongator protein 3, MiaB family, Radical SAM VM_13095 SM00478 endonuclease III VM_13110 SM00478 endonuclease III VM_13110 SM00525 VM_13110 VM_13145 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_13145 SM01049 VM_13145 VM_13175 SM00271 DnaJ molecular chaperone homology domain VM_13195 SM00650 Ribosomal RNA adenine dimethylases VM_13310 SM01119 VM_13310 VM_13340 SM00530 Helix-turn-helix XRE-family like proteins VM_13355 SM00487 DEAD-like helicases superfamily VM_13355 SM00491 VM_13355 VM_13435 SM00316 Ribosomal protein S1-like RNA-binding domain VM_13505 SM00382 ATPases associated with a variety of cellular activities VM_13510 SM00028 Tetratricopeptide repeats VM_13520 SM00965 Secretin and TonB N terminus short domain VM_13540 SM00052 Putative diguanylate phosphodiesterase VM_13540 SM00267 diguanylate cyclase VM_13550 SM00421 helix_turn_helix, Lux Regulon VM_13580 SM01018 B12 binding domain VM_13715 SM01005 Alanine racemase, C-terminal domain VM_13765 SM00838 Elongation factor G C-terminus VM_13765 SM00889 Elongation factor G, domain IV VM_13805 SM00320 WD40 repeats VM_13820 SM00244 prohibitin homologues VM_13825 SM00244 prohibitin homologues VM_13845 SM00853 MutL C terminal dimerisation domain VM_13845 SM01340 VM_13845 VM_13850 SM00257 Lysin motif VM_13850 SM00646 VM_13850 VM_13910 SM00479 VM_13910 VM_13970 SM00663 RNA polymerase I subunit A N-terminus VM_13995 SM00649 Ribosomal protein L11/L12 VM_14000 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VM_14000 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VM_14060 SM00155 Phospholipase D. Active site motifs. VM_14110 SM00357 Cold shock protein domain VM_14110 SM00382 ATPases associated with a variety of cellular activities VM_14110 SM00959 Rho termination factor, N-terminal domain VM_14120 SM00487 DEAD-like helicases superfamily VM_14120 SM00490 helicase superfamily c-terminal domain VM_14130 SM00387 Histidine kinase-like ATPases VM_14130 SM00388 His Kinase A (phosphoacceptor) domain VM_14130 SM00448 cheY-homologous receiver domain VM_14145 SM00116 Domain in cystathionine beta-synthase and other proteins. VM_14150 SM00479 VM_14150 VM_14170 SM00878 Biotin carboxylase C-terminal domain VM_14190 SM00354 helix_turn _helix lactose operon repressor VM_14225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_14225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_14225 SM01049 VM_14225 VM_14240 SM00862 Transcriptional regulatory protein, C terminal VM_14245 SM00422 helix_turn_helix, mercury resistance VM_14250 SM00798 AICARFT/IMPCHase bienzyme VM_14250 SM00851 MGS-like domain VM_14255 SM01209 VM_14255 VM_14255 SM01210 VM_14255 VM_14265 SM00411 bacterial (prokaryotic) histone like domain VM_14285 SM00986 Uracil DNA glycosylase superfamily VM_14285 SM00987 UreE urease accessory protein, C-terminal domain VM_14295 SM00849 Metallo-beta-lactamase superfamily VM_14295 SM01027 Beta-Casp domain VM_14360 SM00984 UDP binding domain VM_14460 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VM_14460 SM01232 VM_14460 VM_14485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_14485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_14485 SM01049 VM_14485 VM_14560 SM00382 ATPases associated with a variety of cellular activities VM_14580 SM00341 Helicase and RNase D C-terminal VM_14580 SM00487 DEAD-like helicases superfamily VM_14580 SM00490 helicase superfamily c-terminal domain VM_14580 SM00956 VM_14580 VM_14595 SM00342 helix_turn_helix, arabinose operon control protein VM_14650 SM00382 ATPases associated with a variety of cellular activities VM_14835 SM00382 ATPases associated with a variety of cellular activities VM_14875 SM00470 ParB-like nuclease domain VM_14890 SM01228 VM_14890 VM_14925 SM00857 Resolvase, N terminal domain VM_15055 SM01234 VM_15055 VM_15070 SM00382 ATPases associated with a variety of cellular activities VM_15080 SM00062 Bacterial periplasmic substrate-binding proteins VM_15080 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VM_15215 SM00360 RNA recognition motif VM_15515 SM00422 helix_turn_helix, mercury resistance VM_15545 SM00342 helix_turn_helix, arabinose operon control protein VM_15590 SM00342 helix_turn_helix, arabinose operon control protein VM_15620 SM00052 Putative diguanylate phosphodiesterase VM_15640 SM00354 helix_turn _helix lactose operon repressor VM_15655 SM00387 Histidine kinase-like ATPases VM_15655 SM00448 cheY-homologous receiver domain VM_15675 SM00833 Cobalamin synthesis protein cobW C-terminal domain VM_15725 SM01130 VM_15725 VM_15755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_15755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_15760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_15760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_15765 SM00052 Putative diguanylate phosphodiesterase VM_15780 SM00867 YceI-like domain VM_15785 SM00116 Domain in cystathionine beta-synthase and other proteins. VM_15820 SM00782 PhnA Zinc-Ribbon VM_15855 SM00062 Bacterial periplasmic substrate-binding proteins VM_15855 SM00267 diguanylate cyclase VM_15885 SM00267 diguanylate cyclase VM_15900 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VM_15900 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VM_15910 SM00387 Histidine kinase-like ATPases VM_15910 SM00388 His Kinase A (phosphoacceptor) domain VM_15915 SM00448 cheY-homologous receiver domain VM_15915 SM00862 Transcriptional regulatory protein, C terminal VM_16050 SM00342 helix_turn_helix, arabinose operon control protein VM_16055 SM00342 helix_turn_helix, arabinose operon control protein VM_16070 SM00823 Phosphopantetheine attachment site VM_16075 SM00822 VM_16075 VM_16075 SM00823 Phosphopantetheine attachment site VM_16075 SM00825 Beta-ketoacyl synthase VM_16075 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VM_16100 SM00382 ATPases associated with a variety of cellular activities VM_16105 SM00382 ATPases associated with a variety of cellular activities VM_16135 SM00881 CoA binding domain VM_16205 SM00382 ATPases associated with a variety of cellular activities VM_16255 SM00345 helix_turn_helix gluconate operon transcriptional repressor VM_16255 SM00866 VM_16255 VM_16265 SM00382 ATPases associated with a variety of cellular activities VM_16340 SM00852 Probable molybdopterin binding domain VM_16355 SM00450 Rhodanese Homology Domain VM_16360 SM00636 VM_16360 VM_16375 SM00861 Transketolase, pyrimidine binding domain VM_16475 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VM_16485 SM00450 Rhodanese Homology Domain VM_16510 SM00563 Phosphate acyltransferases VM_16555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_16580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_16580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_16595 SM00421 helix_turn_helix, Lux Regulon VM_16595 SM00448 cheY-homologous receiver domain VM_16600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_16600 SM00387 Histidine kinase-like ATPases VM_16615 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VM_16635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VM_16640 SM00421 helix_turn_helix, Lux Regulon VM_16640 SM00448 cheY-homologous receiver domain VM_16645 SM00387 Histidine kinase-like ATPases VM_16665 SM00382 ATPases associated with a variety of cellular activities VM_16690 SM00028 Tetratricopeptide repeats VM_16765 SM00822 VM_16765 VM_16770 SM01321 VM_16770 VM_16775 SM01081 Putative carbohydrate binding domain VM_16820 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VM_16820 SM00267 diguanylate cyclase VM_16830 SM00495 Chitin-binding domain type 3 VM_16830 SM00636 VM_16830 VM_16845 SM00448 cheY-homologous receiver domain VM_16850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_16850 SM00387 Histidine kinase-like ATPases VM_16850 SM00388 His Kinase A (phosphoacceptor) domain VM_16875 SM00387 Histidine kinase-like ATPases VM_16875 SM00388 His Kinase A (phosphoacceptor) domain VM_16875 SM00448 cheY-homologous receiver domain VM_16885 SM00851 MGS-like domain VM_16895 SM00014 Acid phosphatase homologues VM_16945 SM00382 ATPases associated with a variety of cellular activities VM_16980 SM00387 Histidine kinase-like ATPases VM_16980 SM00388 His Kinase A (phosphoacceptor) domain VM_16980 SM00448 cheY-homologous receiver domain VM_17125 SM00062 Bacterial periplasmic substrate-binding proteins VM_17125 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VM_17130 SM00382 ATPases associated with a variety of cellular activities VM_17140 SM00327 von Willebrand factor (vWF) type A domain VM_17145 SM00382 ATPases associated with a variety of cellular activities VM_17170 SM00487 DEAD-like helicases superfamily VM_17170 SM00490 helicase superfamily c-terminal domain VM_17190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_17190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_17205 SM00796 Allophanate hydrolase subunit 1 VM_17210 SM00797 Allophanate hydrolase subunit 2 VM_17220 SM00984 UDP binding domain VM_17230 SM00382 ATPases associated with a variety of cellular activities VM_17245 SM00052 Putative diguanylate phosphodiesterase VM_17245 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VM_17245 SM00267 diguanylate cyclase VM_17255 SM00271 DnaJ molecular chaperone homology domain VM_17295 SM01321 VM_17295 VM_17305 SM00020 Trypsin-like serine protease VM_17310 SM00487 DEAD-like helicases superfamily VM_17310 SM00490 helicase superfamily c-terminal domain VM_17315 SM00357 Cold shock protein domain VM_17315 SM00955 VM_17315 VM_17390 SM00382 ATPases associated with a variety of cellular activities VM_17400 SM01007 Class II Aldolase and Adducin N-terminal domain VM_17420 SM00420 helix_turn_helix, Deoxyribose operon repressor VM_17420 SM01134 VM_17420 VM_17430 SM00420 helix_turn_helix, Deoxyribose operon repressor VM_17430 SM01134 VM_17430 VM_17445 SM01007 Class II Aldolase and Adducin N-terminal domain VM_17455 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VM_17545 SM00342 helix_turn_helix, arabinose operon control protein VM_17550 SM00382 ATPases associated with a variety of cellular activities VM_17580 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VM_17585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_17585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_17590 SM00458 Ricin-type beta-trefoil VM_17600 SM00267 diguanylate cyclase VM_17625 SM00387 Histidine kinase-like ATPases VM_17630 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VM_17635 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_17635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_17655 SM00487 DEAD-like helicases superfamily VM_17655 SM00490 helicase superfamily c-terminal domain VM_17660 SM01321 VM_17660 VM_17725 SM00710 Parallel beta-helix repeats VM_17730 SM00342 helix_turn_helix, arabinose operon control protein VM_17755 SM00345 helix_turn_helix gluconate operon transcriptional repressor VM_17755 SM00866 VM_17755 VM_17800 SM01240 VM_17800 VM_17830 SM00091 PAS domain VM_17835 SM00448 cheY-homologous receiver domain VM_17855 SM00357 Cold shock protein domain VM_17865 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VM_17865 SM00382 ATPases associated with a variety of cellular activities VM_17900 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_17900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_17920 SM00327 von Willebrand factor (vWF) type A domain VM_17925 SM00028 Tetratricopeptide repeats VM_17940 SM00357 Cold shock protein domain VM_17945 SM00267 diguanylate cyclase VM_17975 SM00382 ATPases associated with a variety of cellular activities VM_17985 SM00354 helix_turn _helix lactose operon repressor VM_18035 SM00382 ATPases associated with a variety of cellular activities VM_18035 SM00448 cheY-homologous receiver domain VM_18040 SM00345 helix_turn_helix gluconate operon transcriptional repressor VM_18050 SM00091 PAS domain VM_18050 SM00387 Histidine kinase-like ATPases VM_18050 SM00388 His Kinase A (phosphoacceptor) domain VM_18055 SM00495 Chitin-binding domain type 3 VM_18075 SM00100 Cyclic nucleotide-monophosphate binding domain VM_18090 SM00354 helix_turn _helix lactose operon repressor VM_18110 SM00382 ATPases associated with a variety of cellular activities VM_18170 SM00382 ATPases associated with a variety of cellular activities VM_18175 SM00382 ATPases associated with a variety of cellular activities VM_18175 SM01086 C-terminal, D2-small domain, of ClpB protein VM_18250 SM00052 Putative diguanylate phosphodiesterase VM_18255 SM00450 Rhodanese Homology Domain VM_18330 SM00448 cheY-homologous receiver domain VM_18335 SM00387 Histidine kinase-like ATPases VM_18355 SM00342 helix_turn_helix, arabinose operon control protein VM_18355 SM01009 AlkA N-terminal domain VM_18375 SM01154 VM_18375 VM_18390 SM00671 Sel1-like repeats. VM_18405 SM00642 Alpha-amylase domain VM_18420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_18420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_18430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_18430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_18450 SM00342 helix_turn_helix, arabinose operon control protein VM_18500 SM00487 DEAD-like helicases superfamily VM_18500 SM00490 helicase superfamily c-terminal domain VM_18510 SM00345 helix_turn_helix gluconate operon transcriptional repressor VM_18510 SM00895 VM_18510 VM_18595 SM00382 ATPases associated with a variety of cellular activities VM_18610 SM00342 helix_turn_helix, arabinose operon control protein VM_18630 SM00347 helix_turn_helix multiple antibiotic resistance protein VM_18685 SM00448 cheY-homologous receiver domain VM_18685 SM00862 Transcriptional regulatory protein, C terminal VM_18690 SM00387 Histidine kinase-like ATPases VM_18690 SM00388 His Kinase A (phosphoacceptor) domain VM_18700 SM00422 helix_turn_helix, mercury resistance VM_18715 SM00052 Putative diguanylate phosphodiesterase VM_18715 SM00267 diguanylate cyclase VM_18745 SM00267 diguanylate cyclase VM_18750 SM00382 ATPases associated with a variety of cellular activities VM_18770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_18770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_18775 SM00487 DEAD-like helicases superfamily VM_18775 SM00490 helicase superfamily c-terminal domain VM_18785 SM00257 Lysin motif VM_18795 SM00422 helix_turn_helix, mercury resistance VM_18820 SM00028 Tetratricopeptide repeats VM_18840 SM00245 tail specific protease VM_18850 SM00530 Helix-turn-helix XRE-family like proteins VM_18900 SM00014 Acid phosphatase homologues VM_18925 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VM_18925 SM00495 Chitin-binding domain type 3 VM_18925 SM00636 VM_18925 VM_18980 SM00642 Alpha-amylase domain VM_18995 SM00421 helix_turn_helix, Lux Regulon VM_19005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_19005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_19005 SM01049 VM_19005 VM_19050 SM00470 ParB-like nuclease domain VM_19075 SM01236 VM_19075 VM_19080 SM00822 VM_19080 VM_19090 SM00448 cheY-homologous receiver domain VM_19090 SM00862 Transcriptional regulatory protein, C terminal VM_19095 SM00387 Histidine kinase-like ATPases VM_19095 SM00388 His Kinase A (phosphoacceptor) domain VM_19105 SM00382 ATPases associated with a variety of cellular activities VM_19130 SM00448 cheY-homologous receiver domain VM_19135 SM00073 Histidine Phosphotransfer domain VM_19135 SM00260 Two component signalling adaptor domain VM_19135 SM00387 Histidine kinase-like ATPases VM_19135 SM01231 VM_19135 VM_19140 SM00260 Two component signalling adaptor domain VM_19145 SM00260 Two component signalling adaptor domain VM_19150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_19150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_19155 SM00138 Methyltransferase, chemotaxis proteins VM_19165 SM00448 cheY-homologous receiver domain VM_19170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_19180 SM00331 Sigma factor PP2C-like phosphatases VM_19180 SM00448 cheY-homologous receiver domain VM_19190 SM00382 ATPases associated with a variety of cellular activities VM_19195 SM00052 Putative diguanylate phosphodiesterase VM_19195 SM00267 diguanylate cyclase VM_19215 SM00421 helix_turn_helix, Lux Regulon VM_19230 SM00342 helix_turn_helix, arabinose operon control protein VM_19255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_19255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_19260 SM00344 helix_turn_helix ASNC type VM_19295 SM00421 helix_turn_helix, Lux Regulon VM_19340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_19340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_19360 SM00829 Enoylreductase VM_19380 SM00450 Rhodanese Homology Domain VM_19385 SM00347 helix_turn_helix multiple antibiotic resistance protein VM_19415 SM00849 Metallo-beta-lactamase superfamily VM_19460 SM00062 Bacterial periplasmic substrate-binding proteins VM_19470 SM00382 ATPases associated with a variety of cellular activities VM_19485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_19510 SM00331 Sigma factor PP2C-like phosphatases VM_19515 SM00073 Histidine Phosphotransfer domain VM_19515 SM00091 PAS domain VM_19515 SM00387 Histidine kinase-like ATPases VM_19515 SM00388 His Kinase A (phosphoacceptor) domain VM_19515 SM00448 cheY-homologous receiver domain VM_19520 SM00448 cheY-homologous receiver domain VM_19520 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VM_19555 SM00382 ATPases associated with a variety of cellular activities VM_19570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_19570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_19605 SM00267 diguanylate cyclase VM_19630 SM00267 diguanylate cyclase VM_19630 SM01079 VM_19630 VM_19635 SM00530 Helix-turn-helix XRE-family like proteins VM_19645 SM00267 diguanylate cyclase VM_19650 SM00347 helix_turn_helix multiple antibiotic resistance protein VM_19655 SM00260 Two component signalling adaptor domain VM_19655 SM00448 cheY-homologous receiver domain VM_19685 SM00421 helix_turn_helix, Lux Regulon VM_19715 SM00858 VM_19715 VM_19875 SM00382 ATPases associated with a variety of cellular activities VM_19935 SM00420 helix_turn_helix, Deoxyribose operon repressor VM_19935 SM01134 VM_19935 VM_19940 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. VM_19955 SM00382 ATPases associated with a variety of cellular activities VM_19995 SM00420 helix_turn_helix, Deoxyribose operon repressor VM_19995 SM01134 VM_19995 VM_20000 SM00091 PAS domain VM_20000 SM00267 diguanylate cyclase VM_20010 SM00342 helix_turn_helix, arabinose operon control protein VM_20025 SM00357 Cold shock protein domain VM_20035 SM00382 ATPases associated with a variety of cellular activities VM_20060 SM00342 helix_turn_helix, arabinose operon control protein VM_20080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_20080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_20110 SM00382 ATPases associated with a variety of cellular activities VM_20140 SM00729 Elongator protein 3, MiaB family, Radical SAM VM_20155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_20155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VM_20195 SM01350 VM_20195 VM_20210 SM00481 DNA polymerase alpha chain like domain VM_20220 SM00091 PAS domain VM_20220 SM00387 Histidine kinase-like ATPases VM_20220 SM00388 His Kinase A (phosphoacceptor) domain VM_20220 SM00448 cheY-homologous receiver domain VM_20220 SM01079 VM_20220 VM_20225 SM00267 diguanylate cyclase VM_20225 SM00448 cheY-homologous receiver domain VM_20260 SM00829 Enoylreductase VM_20290 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VM_20330 SM00642 Alpha-amylase domain VM_20365 SM00387 Histidine kinase-like ATPases VM_20370 SM00448 cheY-homologous receiver domain VM_20370 SM00850 LytTr DNA-binding domain VM_20380 SM00267 diguanylate cyclase VM_20400 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VM_20435 SM01091 Transporter associated domain VM_20440 SM01266 VM_20440 VM_20490 SM00342 helix_turn_helix, arabinose operon control protein VM_20495 SM00342 helix_turn_helix, arabinose operon control protein VM_20495 SM00871 Bacterial transcription activator, effector binding domain VM_20520 SM00924 MgtE intracellular N domain VM_20540 SM00342 helix_turn_helix, arabinose operon control protein VM_20600 SM01321 VM_20600 VM_20610 SM00267 diguanylate cyclase VM_20650 SM00382 ATPases associated with a variety of cellular activities VM_20655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VM_20660 SM00346 helix_turn_helix isocitrate lyase regulation VM_20665 SM00936 Penicillin-binding protein 5, C-terminal domain VM_20680 SM01057 Eukaryotic-type carbonic anhydrase VM_20705 SM00530 Helix-turn-helix XRE-family like proteins VM_20715 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VM_20800 SM00360 RNA recognition motif