locus-tag class description BA890_00005 PF11638 DnaA N-terminal domain BA890_00005 PF00308 Bacterial dnaA protein BA890_00005 PF08299 Bacterial dnaA protein helix-turn-helix BA890_00010 PF02767 DNA polymerase III beta subunit, central domain BA890_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain BA890_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain BA890_00015 PF02463 RecF/RecN/SMC N terminal domain BA890_00020 PF00986 DNA gyrase B subunit, carboxyl terminus BA890_00020 PF00204 DNA gyrase B BA890_00020 PF18053 DNA gyrase B subunit insert domain BA890_00020 PF01751 Toprim domain BA890_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_00025 PF00011 Hsp20/alpha crystallin family BA890_00030 PF00155 Aminotransferase class I and II BA890_00035 PF00128 Alpha amylase, catalytic domain BA890_00040 PF02092 Glycyl-tRNA synthetase beta subunit BA890_00040 PF05746 DALR anticodon binding domain BA890_00045 PF02091 Glycyl-tRNA synthetase alpha subunit BA890_00050 PF01169 Uncharacterized protein family UPF0016 BA890_00060 PF01206 Sulfurtransferase TusA BA890_00070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_00070 PF03466 LysR substrate binding domain BA890_00075 PF08240 Alcohol dehydrogenase GroES-like domain BA890_00075 PF00107 Zinc-binding dehydrogenase BA890_00080 PF00108 Thiolase, N-terminal domain BA890_00080 PF02803 Thiolase, C-terminal domain BA890_00085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BA890_00085 PF00378 Enoyl-CoA hydratase/isomerase BA890_00085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BA890_00090 PF01205 Uncharacterized protein family UPF0029 BA890_00090 PF09186 Domain of unknown function (DUF1949) BA890_00095 PF02386 Cation transport protein BA890_00100 PF12724 Flavodoxin domain BA890_00135 PF02378 Phosphotransferase system, EIIC BA890_00135 PF00367 phosphotransferase system, EIIB BA890_00140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_00140 PF00512 His Kinase A (phospho-acceptor) domain BA890_00145 PF00072 Response regulator receiver domain BA890_00145 PF00486 Transcriptional regulatory protein, C terminal BA890_00150 PF03466 LysR substrate binding domain BA890_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_00155 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BA890_00155 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BA890_00160 PF04380 Membrane fusogenic activity BA890_00165 PF00873 AcrB/AcrD/AcrF family BA890_00170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_00175 PF00440 Bacterial regulatory proteins, tetR family BA890_00180 PF00580 UvrD/REP helicase N-terminal domain BA890_00180 PF13361 UvrD-like helicase C-terminal domain BA890_00185 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BA890_00225 PF00005 ABC transporter BA890_00225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA890_00230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA890_00240 PF12911 N-terminal TM domain of oligopeptide transport permease C BA890_00240 PF00528 Binding-protein-dependent transport system inner membrane component BA890_00250 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BA890_00250 PF00356 Bacterial regulatory proteins, lacI family BA890_00255 PF00920 Dehydratase family BA890_00260 PF01202 Shikimate kinase BA890_00265 PF02447 GntP family permease BA890_00270 PF01081 KDPG and KHG aldolase BA890_00275 PF06228 Haem utilisation ChuX/HutX BA890_00280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BA890_00280 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_00285 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BA890_00290 PF01432 Peptidase family M3 BA890_00295 PF01037 Lrp/AsnC ligand binding domain BA890_00300 PF04445 Putative SAM-dependent methyltransferase BA890_00310 PF00892 EamA-like transporter family BA890_00315 PF00582 Universal stress protein family BA890_00320 PF00210 Ferritin-like domain BA890_00325 PF10625 Universal stress protein B (UspB) BA890_00360 PF04972 BON domain BA890_00360 PF00263 Bacterial type II and III secretion system protein BA890_00360 PF13629 Pilus formation protein N terminal region BA890_00375 PF00437 Type II/IV secretion system protein BA890_00410 PF01243 Pyridoxamine 5'-phosphate oxidase BA890_00420 PF00005 ABC transporter BA890_00420 PF00664 ABC transporter transmembrane region BA890_00425 PF00005 ABC transporter BA890_00425 PF00664 ABC transporter transmembrane region BA890_00435 PF00563 EAL domain BA890_00435 PF00990 Diguanylate cyclase, GGDEF domain BA890_00435 PF03707 Bacterial signalling protein N terminal repeat BA890_00445 PF02646 RmuC family BA890_00450 PF01209 ubiE/COQ5 methyltransferase family BA890_00455 PF02036 SCP-2 sterol transfer family BA890_00460 PF03109 ABC1 family BA890_00465 PF02416 mttA/Hcf106 family BA890_00470 PF02416 mttA/Hcf106 family BA890_00475 PF00902 Sec-independent protein translocase protein (TatC) BA890_00480 PF00999 Sodium/hydrogen exchanger family BA890_00480 PF03471 Transporter associated domain BA890_00480 PF02080 TrkA-C domain BA890_00485 PF01026 TatD related DNase BA890_00490 PF00490 Delta-aminolevulinic acid dehydratase BA890_00505 PF01612 3'-5' exonuclease BA890_00505 PF00476 DNA polymerase family A BA890_00505 PF01367 5'-3' exonuclease, C-terminal SAM fold BA890_00505 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BA890_00510 PF01926 50S ribosome-binding GTPase BA890_00515 PF00034 Cytochrome c BA890_00530 PF04220 Der GTPase activator (YihI) BA890_00535 PF10675 Protein of unknown function (DUF2489) BA890_00540 PF06969 HemN C-terminal domain BA890_00540 PF04055 Radical SAM superfamily BA890_00545 PF00962 Adenosine/AMP deaminase BA890_00550 PF00563 EAL domain BA890_00550 PF00990 Diguanylate cyclase, GGDEF domain BA890_00550 PF03707 Bacterial signalling protein N terminal repeat BA890_00555 PF02954 Bacterial regulatory protein, Fis family BA890_00555 PF00158 Sigma-54 interaction domain BA890_00555 PF00072 Response regulator receiver domain BA890_00560 PF00989 PAS fold BA890_00560 PF00512 His Kinase A (phospho-acceptor) domain BA890_00560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_00570 PF03951 Glutamine synthetase, beta-Grasp domain BA890_00570 PF00120 Glutamine synthetase, catalytic domain BA890_00590 PF03631 Virulence factor BrkB BA890_00595 PF02580 D-Tyr-tRNA(Tyr) deacylase BA890_00600 PF00583 Acetyltransferase (GNAT) family BA890_00600 PF09500 Putative thioesterase (yiiD_Cterm) BA890_00610 PF01293 Phosphoenolpyruvate carboxykinase BA890_00615 PF01430 Hsp33 protein BA890_00620 PF01479 S4 domain BA890_00625 PF11356 Type II secretion system protein C BA890_00630 PF00263 Bacterial type II and III secretion system protein BA890_00630 PF03958 Bacterial type II/III secretion system short domain BA890_00635 PF00437 Type II/IV secretion system protein BA890_00640 PF00482 Type II secretion system (T2SS), protein F BA890_00645 PF07963 Prokaryotic N-terminal methylation motif BA890_00645 PF08334 Type II secretion system (T2SS), protein G BA890_00650 PF12019 Type II transport protein GspH BA890_00655 PF02501 Type II secretion system (T2SS), protein I BA890_00655 PF07963 Prokaryotic N-terminal methylation motif BA890_00660 PF07963 Prokaryotic N-terminal methylation motif BA890_00660 PF11612 Type II secretion system (T2SS), protein J BA890_00665 PF03934 Type II secretion system (T2SS), protein K BA890_00670 PF12693 GspL periplasmic domain BA890_00670 PF05134 Type II secretion system (T2SS), protein L BA890_00675 PF04612 Type II secretion system (T2SS), protein M BA890_00680 PF01203 Type II secretion system (T2SS), protein N BA890_00685 PF00459 Inositol monophosphatase family BA890_00690 PF00293 NUDIX domain BA890_00695 PF01106 NifU-like domain BA890_00695 PF01521 Iron-sulphur cluster biosynthesis BA890_00700 PF00156 Phosphoribosyl transferase domain BA890_00705 PF00561 alpha/beta hydrolase fold BA890_00715 PF17674 HHH domain BA890_00715 PF16921 Tex protein YqgF-like domain BA890_00715 PF09371 Tex-like protein N-terminal domain BA890_00715 PF00575 S1 RNA binding domain BA890_00725 PF03449 Transcription elongation factor, N-terminal BA890_00725 PF01272 Transcription elongation factor, GreA/GreB, C-term BA890_00735 PF00072 Response regulator receiver domain BA890_00735 PF00486 Transcriptional regulatory protein, C terminal BA890_00740 PF00672 HAMP domain BA890_00740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_00740 PF00512 His Kinase A (phospho-acceptor) domain BA890_00745 PF00860 Permease family BA890_00750 PF00271 Helicase conserved C-terminal domain BA890_00750 PF00270 DEAD/DEAH box helicase BA890_00750 PF17191 RecG wedge domain BA890_00755 PF00588 SpoU rRNA Methylase family BA890_00755 PF12105 SpoU, rRNA methylase, C-terminal BA890_00760 PF13291 ACT domain BA890_00760 PF04607 Region found in RelA / SpoT proteins BA890_00760 PF02824 TGS domain BA890_00765 PF01192 RNA polymerase Rpb6 BA890_00770 PF00625 Guanylate kinase BA890_00785 PF02472 Biopolymer transport protein ExbD/TolR BA890_00790 PF01618 MotA/TolQ/ExbB proton channel family BA890_00805 PF07715 TonB-dependent Receptor Plug Domain BA890_00805 PF00593 TonB dependent receptor BA890_00810 PF00528 Binding-protein-dependent transport system inner membrane component BA890_00815 PF00528 Binding-protein-dependent transport system inner membrane component BA890_00815 PF12911 N-terminal TM domain of oligopeptide transport permease C BA890_00820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA890_00855 PF08340 Domain of unknown function (DUF1732) BA890_00855 PF03755 YicC-like family, N-terminal region BA890_00860 PF01138 3' exoribonuclease family, domain 1 BA890_00860 PF03725 3' exoribonuclease family, domain 2 BA890_00865 PF00156 Phosphoribosyl transferase domain BA890_00870 PF03279 Bacterial lipid A biosynthesis acyltransferase BA890_00875 PF00440 Bacterial regulatory proteins, tetR family BA890_00880 PF04127 DNA / pantothenate metabolism flavoprotein BA890_00880 PF02441 Flavoprotein BA890_00885 PF04002 RadC-like JAB domain BA890_00890 PF00830 Ribosomal L28 family BA890_00895 PF00471 Ribosomal protein L33 BA890_00905 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BA890_00905 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BA890_00905 PF06827 Zinc finger found in FPG and IleRS BA890_00910 PF01467 Cytidylyltransferase-like BA890_00915 PF00534 Glycosyl transferases group 1 BA890_00915 PF13439 Glycosyltransferase Family 4 BA890_00920 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BA890_00930 PF13439 Glycosyltransferase Family 4 BA890_00930 PF00534 Glycosyl transferases group 1 BA890_00935 PF01219 Prokaryotic diacylglycerol kinase BA890_00945 PF03275 UDP-galactopyranose mutase BA890_00960 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BA890_00965 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BA890_00970 PF03279 Bacterial lipid A biosynthesis acyltransferase BA890_00975 PF01370 NAD dependent epimerase/dehydratase family BA890_00980 PF06082 Exopolysaccharide biosynthesis protein YbjH BA890_01000 PF00953 Glycosyl transferase family 4 BA890_01005 PF00009 Elongation factor Tu GTP binding domain BA890_01020 PF01507 Phosphoadenosine phosphosulfate reductase family BA890_01025 PF02080 TrkA-C domain BA890_01025 PF03600 Citrate transporter BA890_01030 PF00005 ABC transporter BA890_01070 PF00483 Nucleotidyl transferase BA890_01095 PF16363 GDP-mannose 4,6 dehydratase BA890_01100 PF04321 RmlD substrate binding domain BA890_01115 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BA890_01120 PF00483 Nucleotidyl transferase BA890_01130 PF01061 ABC-2 type transporter BA890_01135 PF10531 SLBB domain BA890_01135 PF02563 Polysaccharide biosynthesis/export protein BA890_01145 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BA890_01145 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BA890_01145 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BA890_01150 PF02563 Polysaccharide biosynthesis/export protein BA890_01150 PF10531 SLBB domain BA890_01150 PF18412 Outer-membrane lipoprotein Wza C-terminal domain BA890_01155 PF01451 Low molecular weight phosphotyrosine protein phosphatase BA890_01160 PF13614 AAA domain BA890_01160 PF13807 G-rich domain on putative tyrosine kinase BA890_01160 PF02706 Chain length determinant protein BA890_01165 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BA890_01165 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BA890_01165 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BA890_01175 PF01370 NAD dependent epimerase/dehydratase family BA890_01195 PF00534 Glycosyl transferases group 1 BA890_01195 PF13439 Glycosyltransferase Family 4 BA890_01200 PF00535 Glycosyl transferase family 2 BA890_01200 PF02709 N-terminal domain of galactosyltransferase BA890_01205 PF00534 Glycosyl transferases group 1 BA890_01205 PF13439 Glycosyltransferase Family 4 BA890_01215 PF02397 Bacterial sugar transferase BA890_01225 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BA890_01230 PF02719 Polysaccharide biosynthesis protein BA890_01235 PF10996 Beta-Casp domain BA890_01235 PF00753 Metallo-beta-lactamase superfamily BA890_01235 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BA890_01245 PF00121 Triosephosphate isomerase BA890_01255 PF05686 Glycosyl transferase family 90 BA890_01260 PF05656 Protein of unknown function (DUF805) BA890_01270 PF08220 DeoR-like helix-turn-helix domain BA890_01270 PF00455 DeoR C terminal sensor domain BA890_01275 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BA890_01280 PF06005 Cell division protein ZapB BA890_01285 PF03737 Aldolase/RraA BA890_01290 PF01040 UbiA prenyltransferase family BA890_01295 PF07724 AAA domain (Cdc48 subfamily) BA890_01295 PF00004 ATPase family associated with various cellular activities (AAA) BA890_01300 PF00227 Proteasome subunit BA890_01310 PF00356 Bacterial regulatory proteins, lacI family BA890_01315 PF18074 Primosomal protein N C-terminal domain BA890_01315 PF17764 3′ DNA-binding domain (3′BD) BA890_01315 PF00271 Helicase conserved C-terminal domain BA890_01315 PF00270 DEAD/DEAH box helicase BA890_01315 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BA890_01320 PF01197 Ribosomal protein L31 BA890_01325 PF00338 Ribosomal protein S10p/S20e BA890_01330 PF00297 Ribosomal protein L3 BA890_01335 PF00573 Ribosomal protein L4/L1 family BA890_01340 PF00276 Ribosomal protein L23 BA890_01345 PF03947 Ribosomal Proteins L2, C-terminal domain BA890_01345 PF00181 Ribosomal Proteins L2, RNA binding domain BA890_01350 PF00203 Ribosomal protein S19 BA890_01355 PF00237 Ribosomal protein L22p/L17e BA890_01360 PF07650 KH domain BA890_01360 PF00189 Ribosomal protein S3, C-terminal domain BA890_01365 PF00252 Ribosomal protein L16p/L10e BA890_01370 PF00831 Ribosomal L29 protein BA890_01375 PF00366 Ribosomal protein S17 BA890_01380 PF00238 Ribosomal protein L14p/L23e BA890_01385 PF00467 KOW motif BA890_01385 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BA890_01390 PF00281 Ribosomal protein L5 BA890_01390 PF00673 ribosomal L5P family C-terminus BA890_01395 PF00253 Ribosomal protein S14p/S29e BA890_01400 PF00410 Ribosomal protein S8 BA890_01405 PF00347 Ribosomal protein L6 BA890_01410 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BA890_01415 PF03719 Ribosomal protein S5, C-terminal domain BA890_01415 PF00333 Ribosomal protein S5, N-terminal domain BA890_01420 PF00327 Ribosomal protein L30p/L7e BA890_01430 PF00344 SecY translocase BA890_01435 PF00444 Ribosomal protein L36 BA890_01440 PF00416 Ribosomal protein S13/S18 BA890_01445 PF00411 Ribosomal protein S11 BA890_01450 PF00163 Ribosomal protein S4/S9 N-terminal domain BA890_01450 PF01479 S4 domain BA890_01455 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BA890_01455 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BA890_01455 PF01000 RNA polymerase Rpb3/RpoA insert domain BA890_01460 PF01196 Ribosomal protein L17 BA890_01470 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BA890_01470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BA890_01480 PF13673 Acetyltransferase (GNAT) domain BA890_01485 PF00271 Helicase conserved C-terminal domain BA890_01485 PF00270 DEAD/DEAH box helicase BA890_01485 PF03880 DbpA RNA binding domain BA890_01495 PF02872 5'-nucleotidase, C-terminal domain BA890_01495 PF00149 Calcineurin-like phosphoesterase BA890_01500 PF14824 Sirohaem biosynthesis protein central BA890_01500 PF10414 Sirohaem synthase dimerisation region BA890_01500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BA890_01505 PF01507 Phosphoadenosine phosphosulfate reductase family BA890_01510 PF00009 Elongation factor Tu GTP binding domain BA890_01515 PF02080 TrkA-C domain BA890_01515 PF03600 Citrate transporter BA890_01540 PF00005 ABC transporter BA890_01550 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) BA890_01555 PF06526 Protein of unknown function (DUF1107) BA890_01560 PF01625 Peptide methionine sulfoxide reductase BA890_01565 PF17243 POTRA domain TamA domain 1 BA890_01565 PF01103 Surface antigen BA890_01565 PF07244 Surface antigen variable number repeat BA890_01570 PF04357 TamB, inner membrane protein subunit of TAM complex BA890_01575 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BA890_01580 PF00719 Inorganic pyrophosphatase BA890_01585 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BA890_01590 PF01225 Mur ligase family, catalytic domain BA890_01590 PF02875 Mur ligase family, glutamate ligase domain BA890_01590 PF08245 Mur ligase middle domain BA890_01595 PF02441 Flavoprotein BA890_01605 PF00528 Binding-protein-dependent transport system inner membrane component BA890_01610 PF00005 ABC transporter BA890_01615 PF00582 Universal stress protein family BA890_01630 PF01316 Arginine repressor, DNA binding domain BA890_01630 PF02863 Arginine repressor, C-terminal domain BA890_01635 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BA890_01635 PF00056 lactate/malate dehydrogenase, NAD binding domain BA890_01645 PF00348 Polyprenyl synthetase BA890_01650 PF00829 Ribosomal prokaryotic L21 protein BA890_01655 PF01016 Ribosomal L27 protein BA890_01660 PF01018 GTP1/OBG BA890_01660 PF01926 50S ribosome-binding GTPase BA890_01665 PF06738 Putative threonine/serine exporter BA890_01670 PF12821 Threonine/Serine exporter, ThrE BA890_01675 PF00186 Dihydrofolate reductase BA890_01680 PF00149 Calcineurin-like phosphoesterase BA890_01685 PF04379 ApaG domain BA890_01690 PF00398 Ribosomal RNA adenine dimethylase BA890_01695 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BA890_01700 PF09312 SurA N-terminal domain BA890_01705 PF03968 OstA-like protein BA890_01705 PF04453 LPS transport system D BA890_01710 PF05099 Tellurite resistance protein TerB BA890_01710 PF00226 DnaJ domain BA890_01720 PF00694 Aconitase C-terminal domain BA890_01725 PF00330 Aconitase family (aconitate hydratase) BA890_01730 PF00180 Isocitrate/isopropylmalate dehydrogenase BA890_01735 PF00682 HMGL-like BA890_01735 PF08502 LeuA allosteric (dimerisation) domain BA890_01745 PF01569 PAP2 superfamily BA890_01755 PF03466 LysR substrate binding domain BA890_01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_01760 PF00501 AMP-binding enzyme BA890_01765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BA890_01765 PF00205 Thiamine pyrophosphate enzyme, central domain BA890_01765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BA890_01770 PF10369 Small subunit of acetolactate synthase BA890_01775 PF00224 Pyruvate kinase, barrel domain BA890_01775 PF02887 Pyruvate kinase, alpha/beta domain BA890_01780 PF00455 DeoR C terminal sensor domain BA890_01780 PF08220 DeoR-like helix-turn-helix domain BA890_01785 PF01380 SIS domain BA890_01790 PF01418 Helix-turn-helix domain, rpiR family BA890_01790 PF01380 SIS domain BA890_01795 PF02378 Phosphotransferase system, EIIC BA890_01795 PF00367 phosphotransferase system, EIIB BA890_01800 PF13580 SIS domain BA890_01805 PF05068 Mannitol repressor BA890_01810 PF08125 Mannitol dehydrogenase C-terminal domain BA890_01810 PF01232 Mannitol dehydrogenase Rossmann domain BA890_01815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BA890_01815 PF02378 Phosphotransferase system, EIIC BA890_01815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BA890_01825 PF01979 Amidohydrolase family BA890_01850 PF03180 NLPA lipoprotein BA890_01855 PF00669 Bacterial flagellin N-terminal helical region BA890_01855 PF00700 Bacterial flagellin C-terminal helical region BA890_01855 PF07196 Flagellin hook IN motif BA890_01865 PF04546 Sigma-70, non-essential region BA890_01865 PF03979 Sigma-70 factor, region 1.1 BA890_01865 PF00140 Sigma-70 factor, region 1.2 BA890_01865 PF04542 Sigma-70 region 2 BA890_01865 PF04539 Sigma-70 region 3 BA890_01865 PF04545 Sigma-70, region 4 BA890_01870 PF01807 CHC2 zinc finger BA890_01870 PF08275 DNA primase catalytic core, N-terminal domain BA890_01870 PF08278 DNA primase DnaG DnaB-binding BA890_01870 PF10410 DnaB-helicase binding domain of primase BA890_01875 PF09424 Yqey-like protein BA890_01880 PF01165 Ribosomal protein S21 BA890_01885 PF00814 Glycoprotease family BA890_01890 PF00561 alpha/beta hydrolase fold BA890_01895 PF02660 Glycerol-3-phosphate acyltransferase BA890_01900 PF02152 Dihydroneopterin aldolase BA890_01905 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BA890_01910 PF02673 Bacitracin resistance protein BacA BA890_01915 PF12627 Probable RNA and SrmB- binding site of polymerase A BA890_01915 PF01743 Poly A polymerase head domain BA890_01915 PF01966 HD domain BA890_01920 PF13401 AAA domain BA890_01920 PF01471 Putative peptidoglycan binding domain BA890_01930 PF08239 Bacterial SH3 domain BA890_01935 PF01384 Phosphate transporter family BA890_01940 PF01865 Protein of unknown function DUF47 BA890_01945 PF01928 CYTH domain BA890_01955 PF02743 Cache domain BA890_01955 PF00672 HAMP domain BA890_01955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA890_01960 PF03710 Glutamate-ammonia ligase adenylyltransferase BA890_01960 PF08335 GlnD PII-uridylyltransferase BA890_01965 PF00294 pfkB family carbohydrate kinase BA890_01965 PF01467 Cytidylyltransferase-like BA890_01970 PF02321 Outer membrane efflux protein BA890_01975 PF00293 NUDIX domain BA890_01980 PF06853 Protein of unknown function (DUF1249) BA890_01985 PF00149 Calcineurin-like phosphoesterase BA890_01990 PF05728 Uncharacterised protein family (UPF0227) BA890_01995 PF00204 DNA gyrase B BA890_01995 PF00986 DNA gyrase B subunit, carboxyl terminus BA890_01995 PF01751 Toprim domain BA890_01995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_02000 PF03989 DNA gyrase C-terminal domain, beta-propeller BA890_02000 PF00521 DNA gyrase/topoisomerase IV, subunit A BA890_02005 PF13180 PDZ domain BA890_02010 PF00595 PDZ domain BA890_02015 PF06295 Protein of unknown function (DUF1043) BA890_02020 PF03969 AFG1-like ATPase BA890_02025 PF00572 Ribosomal protein L13 BA890_02030 PF00380 Ribosomal protein S9/S16 BA890_02035 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BA890_02035 PF00355 Rieske [2Fe-2S] domain BA890_02040 PF00032 Cytochrome b(C-terminal)/b6/petD BA890_02040 PF00033 Cytochrome b/b6/petB BA890_02045 PF02167 Cytochrome C1 family BA890_02050 PF00043 Glutathione S-transferase, C-terminal domain BA890_02050 PF02798 Glutathione S-transferase, N-terminal domain BA890_02055 PF04386 Stringent starvation protein B BA890_02060 PF04972 BON domain BA890_02065 PF13580 SIS domain BA890_02070 PF02021 Uncharacterised protein family UPF0102 BA890_02075 PF04348 LppC putative lipoprotein BA890_02080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BA890_02090 PF01795 MraW methylase family BA890_02095 PF04999 Cell division protein FtsL BA890_02100 PF03717 Penicillin-binding Protein dimerisation domain BA890_02100 PF00905 Penicillin binding protein transpeptidase domain BA890_02105 PF08245 Mur ligase middle domain BA890_02105 PF01225 Mur ligase family, catalytic domain BA890_02105 PF02875 Mur ligase family, glutamate ligase domain BA890_02110 PF01225 Mur ligase family, catalytic domain BA890_02110 PF02875 Mur ligase family, glutamate ligase domain BA890_02110 PF08245 Mur ligase middle domain BA890_02115 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BA890_02115 PF00953 Glycosyl transferase family 4 BA890_02120 PF02875 Mur ligase family, glutamate ligase domain BA890_02120 PF08245 Mur ligase middle domain BA890_02125 PF01098 Cell cycle protein BA890_02130 PF03033 Glycosyltransferase family 28 N-terminal domain BA890_02130 PF04101 Glycosyltransferase family 28 C-terminal domain BA890_02135 PF01225 Mur ligase family, catalytic domain BA890_02135 PF02875 Mur ligase family, glutamate ligase domain BA890_02135 PF08245 Mur ligase middle domain BA890_02140 PF08478 POTRA domain, FtsQ-type BA890_02140 PF03799 Cell division protein FtsQ BA890_02145 PF02491 SHS2 domain inserted in FTSA BA890_02150 PF12327 FtsZ family, C-terminal domain BA890_02150 PF00091 Tubulin/FtsZ family, GTPase domain BA890_02155 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BA890_02165 PF07517 SecA DEAD-like domain BA890_02165 PF02810 SEC-C motif BA890_02165 PF07516 SecA Wing and Scaffold domain BA890_02165 PF01043 SecA preprotein cross-linking domain BA890_02170 PF00293 NUDIX domain BA890_02175 PF05173 Dihydrodipicolinate reductase, C-terminus BA890_02175 PF01113 Dihydrodipicolinate reductase, N-terminus BA890_02180 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BA890_02180 PF00117 Glutamine amidotransferase class-I BA890_02185 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BA890_02185 PF02142 MGS-like domain BA890_02185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BA890_02190 PF01925 Sulfite exporter TauE/SafE BA890_02195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_02195 PF03466 LysR substrate binding domain BA890_02200 PF03458 UPF0126 domain BA890_02205 PF01497 Periplasmic binding protein BA890_02215 PF01048 Phosphorylase superfamily BA890_02225 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_02225 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BA890_02230 PF01645 Conserved region in glutamate synthase BA890_02230 PF00310 Glutamine amidotransferases class-II BA890_02230 PF01493 GXGXG motif BA890_02230 PF04898 Glutamate synthase central domain BA890_02235 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BA890_02235 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_02240 PF01645 Conserved region in glutamate synthase BA890_02240 PF01493 GXGXG motif BA890_02240 PF00310 Glutamine amidotransferases class-II BA890_02240 PF04898 Glutamate synthase central domain BA890_02245 PF16199 Radical_SAM C-terminal domain BA890_02245 PF04055 Radical SAM superfamily BA890_02250 PF00072 Response regulator receiver domain BA890_02250 PF01627 Hpt domain BA890_02250 PF18415 Histidine kinase receptor ArcB trans-membrane domain BA890_02250 PF00512 His Kinase A (phospho-acceptor) domain BA890_02250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_02250 PF00989 PAS fold BA890_02260 PF00486 Transcriptional regulatory protein, C terminal BA890_02260 PF00072 Response regulator receiver domain BA890_02270 PF03737 Aldolase/RraA BA890_02280 PF13840 ACT domain BA890_02280 PF00742 Homoserine dehydrogenase BA890_02280 PF03447 Homoserine dehydrogenase, NAD binding domain BA890_02280 PF00696 Amino acid kinase family BA890_02280 PF01842 ACT domain BA890_02285 PF00288 GHMP kinases N terminal domain BA890_02285 PF08544 GHMP kinases C terminal BA890_02290 PF00291 Pyridoxal-phosphate dependent enzyme BA890_02290 PF14821 Threonine synthase N terminus BA890_02295 PF01228 Glycine radical BA890_02300 PF01261 Xylose isomerase-like TIM barrel BA890_02305 PF03167 Uracil DNA glycosylase superfamily BA890_02320 PF01235 Sodium:alanine symporter family BA890_02325 PF03883 Peroxide stress protein YaaA BA890_02330 PF00271 Helicase conserved C-terminal domain BA890_02330 PF00270 DEAD/DEAH box helicase BA890_02335 PF05175 Methyltransferase small domain BA890_02340 PF05525 Branched-chain amino acid transport protein BA890_02345 PF00258 Flavodoxin BA890_02350 PF02899 Phage integrase, N-terminal SAM-like domain BA890_02350 PF00589 Phage integrase family BA890_02355 PF13098 Thioredoxin-like domain BA890_02355 PF10411 Disulfide bond isomerase protein N-terminus BA890_02360 PF02272 DHHA1 domain BA890_02360 PF17768 RecJ OB domain BA890_02360 PF01368 DHH family BA890_02365 PF03462 PCRF domain BA890_02365 PF00472 RF-1 domain BA890_02370 PF01336 OB-fold nucleic acid binding domain BA890_02370 PF00152 tRNA synthetases class II (D, K and N) BA890_02375 PF02954 Bacterial regulatory protein, Fis family BA890_02375 PF00989 PAS fold BA890_02375 PF00158 Sigma-54 interaction domain BA890_02385 PF00248 Aldo/keto reductase family BA890_02395 PF02976 DNA mismatch repair enzyme MutH BA890_02400 PF00293 NUDIX domain BA890_02405 PF05524 PEP-utilising enzyme, N-terminal BA890_02405 PF02896 PEP-utilising enzyme, TIM barrel domain BA890_02405 PF01590 GAF domain BA890_02405 PF00391 PEP-utilising enzyme, mobile domain BA890_02410 PF01925 Sulfite exporter TauE/SafE BA890_02415 PF01790 Prolipoprotein diacylglyceryl transferase BA890_02420 PF00303 Thymidylate synthase BA890_02430 PF02690 Na+/Pi-cotransporter BA890_02435 PF03466 LysR substrate binding domain BA890_02435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_02440 PF01022 Bacterial regulatory protein, arsR family BA890_02445 PF01649 Ribosomal protein S20 BA890_02450 PF03023 Lipid II flippase MurJ BA890_02455 PF06574 FAD synthetase BA890_02455 PF01687 Riboflavin kinase BA890_02460 PF08264 Anticodon-binding domain of tRNA BA890_02460 PF06827 Zinc finger found in FPG and IleRS BA890_02460 PF00133 tRNA synthetases class I (I, L, M and V) BA890_02465 PF01252 Signal peptidase (SPase) II BA890_02470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BA890_02475 PF02401 LytB protein BA890_02480 PF00072 Response regulator receiver domain BA890_02480 PF04397 LytTr DNA-binding domain BA890_02485 PF07694 5TMR of 5TMR-LYT BA890_02485 PF06580 Histidine kinase BA890_02490 PF02554 Carbon starvation protein CstA BA890_02505 PF01380 SIS domain BA890_02510 PF03702 Anhydro-N-acetylmuramic acid kinase BA890_02515 PF00933 Glycosyl hydrolase family 3 N terminal domain BA890_02520 PF00793 DAHP synthetase I family BA890_02525 PF01817 Chorismate mutase type II BA890_02525 PF02153 Prephenate dehydrogenase BA890_02530 PF01551 Peptidase family M23 BA890_02530 PF04225 Opacity-associated protein A LysM-like domain BA890_02535 PF12848 ABC transporter BA890_02535 PF00005 ABC transporter BA890_02540 PF01464 Transglycosylase SLT domain BA890_02540 PF14718 Soluble lytic murein transglycosylase L domain BA890_02545 PF01371 Trp repressor protein BA890_02550 PF01931 Protein of unknown function DUF84 BA890_02555 PF00800 Prephenate dehydratase BA890_02555 PF01817 Chorismate mutase type II BA890_02560 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BA890_02565 PF01464 Transglycosylase SLT domain BA890_02565 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_02570 PF13525 Outer membrane lipoprotein BA890_02575 PF01479 S4 domain BA890_02575 PF00849 RNA pseudouridylate synthase BA890_02585 PF02861 Clp amino terminal domain, pathogenicity island component BA890_02585 PF10431 C-terminal, D2-small domain, of ClpB protein BA890_02585 PF00004 ATPase family associated with various cellular activities (AAA) BA890_02585 PF07724 AAA domain (Cdc48 subfamily) BA890_02585 PF17871 AAA lid domain BA890_02600 PF00005 ABC transporter BA890_02610 PF01979 Amidohydrolase family BA890_02660 PF03411 Penicillin-insensitive murein endopeptidase BA890_02670 PF00037 4Fe-4S binding domain BA890_02680 PF04381 Putative exonuclease, RdgC BA890_02690 PF00486 Transcriptional regulatory protein, C terminal BA890_02690 PF00072 Response regulator receiver domain BA890_02695 PF11808 Phosphate regulon sensor protein PhoR BA890_02695 PF00989 PAS fold BA890_02695 PF00512 His Kinase A (phospho-acceptor) domain BA890_02695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_02700 PF12849 PBP superfamily domain BA890_02705 PF02541 Ppx/GppA phosphatase family BA890_02710 PF02503 Polyphosphate kinase middle domain BA890_02710 PF13090 Polyphosphate kinase C-terminal domain 2 BA890_02710 PF13089 Polyphosphate kinase N-terminal domain BA890_02710 PF17941 Polyphosphate kinase C-terminal domain 1 BA890_02715 PF00528 Binding-protein-dependent transport system inner membrane component BA890_02720 PF00528 Binding-protein-dependent transport system inner membrane component BA890_02725 PF00005 ABC transporter BA890_02730 PF01895 PhoU domain BA890_02735 PF03976 Polyphosphate kinase 2 (PPK2) BA890_02740 PF03932 CutC family BA890_02745 PF00578 AhpC/TSA family BA890_02745 PF10417 C-terminal domain of 1-Cys peroxiredoxin BA890_02750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_02750 PF03466 LysR substrate binding domain BA890_02755 PF01274 Malate synthase BA890_02760 PF00463 Isocitrate lyase family BA890_02765 PF00571 CBS domain BA890_02775 PF02547 Queuosine biosynthesis protein BA890_02780 PF01702 Queuine tRNA-ribosyltransferase BA890_02785 PF02699 Preprotein translocase subunit BA890_02790 PF02355 Protein export membrane protein BA890_02790 PF13721 SecD export protein N-terminal TM region BA890_02790 PF07549 SecD/SecF GG Motif BA890_02795 PF02355 Protein export membrane protein BA890_02795 PF07549 SecD/SecF GG Motif BA890_02800 PF00459 Inositol monophosphatase family BA890_02805 PF00588 SpoU rRNA Methylase family BA890_02810 PF02082 Transcriptional regulator BA890_02815 PF00266 Aminotransferase class-V BA890_02820 PF01592 NifU-like N terminal domain BA890_02825 PF01521 Iron-sulphur cluster biosynthesis BA890_02830 PF07743 HSCB C-terminal oligomerisation domain BA890_02830 PF00226 DnaJ domain BA890_02835 PF00012 Hsp70 protein BA890_02840 PF00111 2Fe-2S iron-sulfur cluster binding domain BA890_02845 PF04384 Iron-sulphur cluster assembly BA890_02850 PF12404 Peptidase BA890_02850 PF00883 Cytosol aminopeptidase family, catalytic domain BA890_02855 PF00334 Nucleoside diphosphate kinase BA890_02860 PF04055 Radical SAM superfamily BA890_02865 PF13464 Domain of unknown function (DUF4115) BA890_02870 PF04551 GcpE protein BA890_02875 PF03129 Anticodon binding domain BA890_02875 PF13393 Histidyl-tRNA synthetase BA890_02880 PF09976 Tetratricopeptide repeat-like domain BA890_02885 PF13360 PQQ-like domain BA890_02890 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BA890_02890 PF01926 50S ribosome-binding GTPase BA890_02905 PF13742 OB-fold nucleic acid binding domain BA890_02905 PF02601 Exonuclease VII, large subunit BA890_02910 PF00571 CBS domain BA890_02910 PF00478 IMP dehydrogenase / GMP reductase domain BA890_02915 PF00958 GMP synthase C terminal domain BA890_02915 PF00117 Glutamine amidotransferase class-I BA890_02915 PF02540 NAD synthase BA890_02930 PF01184 GPR1/FUN34/yaaH family BA890_02940 PF07690 Major Facilitator Superfamily BA890_02945 PF01546 Peptidase family M20/M25/M40 BA890_02945 PF07687 Peptidase dimerisation domain BA890_02950 PF03466 LysR substrate binding domain BA890_02950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_02955 PF01235 Sodium:alanine symporter family BA890_02960 PF01266 FAD dependent oxidoreductase BA890_02970 PF01053 Cys/Met metabolism PLP-dependent enzyme BA890_02975 PF00202 Aminotransferase class-III BA890_02995 PF00583 Acetyltransferase (GNAT) family BA890_02995 PF00795 Carbon-nitrogen hydrolase BA890_03000 PF03466 LysR substrate binding domain BA890_03000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_03005 PF00596 Class II Aldolase and Adducin N-terminal domain BA890_03010 PF06134 L-rhamnose isomerase (RhaA) BA890_03015 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BA890_03020 PF05336 L-rhamnose mutarotase BA890_03030 PF02311 AraC-like ligand binding domain BA890_03030 PF12833 Helix-turn-helix domain BA890_03050 PF05384 Sensor protein DegS BA890_03050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_03050 PF07730 Histidine kinase BA890_03055 PF00072 Response regulator receiver domain BA890_03055 PF00196 Bacterial regulatory proteins, luxR family BA890_03065 PF01668 SmpB protein BA890_03070 PF03364 Polyketide cyclase / dehydrase and lipid transport BA890_03075 PF03658 RnfH family Ubiquitin BA890_03080 PF04355 SmpA / OmlA family BA890_03085 PF02463 RecF/RecN/SMC N terminal domain BA890_03090 PF01513 ATP-NAD kinase BA890_03095 PF01025 GrpE BA890_03100 PF00375 Sodium:dicarboxylate symporter family BA890_03105 PF00012 Hsp70 protein BA890_03110 PF00684 DnaJ central domain BA890_03110 PF01556 DnaJ C terminal domain BA890_03110 PF00226 DnaJ domain BA890_03115 PF07963 Prokaryotic N-terminal methylation motif BA890_03115 PF00114 Pilin (bacterial filament) BA890_03140 PF03806 AbgT putative transporter family BA890_03145 PF14437 MafB19-like deaminase BA890_03150 PF01464 Transglycosylase SLT domain BA890_03150 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_03155 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BA890_03155 PF02769 AIR synthase related protein, C-terminal domain BA890_03155 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BA890_03190 PF07687 Peptidase dimerisation domain BA890_03190 PF01546 Peptidase family M20/M25/M40 BA890_03195 PF00860 Permease family BA890_03200 PF00156 Phosphoribosyl transferase domain BA890_03210 PF07417 Sigma factor-binding transcriptional regulator Crl BA890_03215 PF01472 PUA domain BA890_03215 PF00696 Amino acid kinase family BA890_03220 PF00171 Aldehyde dehydrogenase family BA890_03225 PF03477 ATP cone domain BA890_03230 PF01872 RibD C-terminal domain BA890_03230 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BA890_03235 PF00677 Lumazine binding domain BA890_03240 PF00925 GTP cyclohydrolase II BA890_03240 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BA890_03245 PF00885 6,7-dimethyl-8-ribityllumazine synthase BA890_03250 PF01029 NusB family BA890_03255 PF00586 AIR synthase related protein, N-terminal domain BA890_03255 PF02769 AIR synthase related protein, C-terminal domain BA890_03260 PF04608 Phosphatidylglycerophosphatase A BA890_03265 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BA890_03265 PF02779 Transketolase, pyrimidine binding domain BA890_03265 PF02780 Transketolase, C-terminal domain BA890_03270 PF00348 Polyprenyl synthetase BA890_03275 PF02609 Exonuclease VII small subunit BA890_03280 PF01618 MotA/TolQ/ExbB proton channel family BA890_03285 PF00691 OmpA family BA890_03290 PF02926 THUMP domain BA890_03290 PF02568 Thiamine biosynthesis protein (ThiI) BA890_03295 PF03466 LysR substrate binding domain BA890_03295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_03305 PF04241 Protein of unknown function (DUF423) BA890_03310 PF18125 RlmM ferredoxin-like domain BA890_03310 PF01728 FtsJ-like methyltransferase BA890_03315 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BA890_03315 PF01367 5'-3' exonuclease, C-terminal SAM fold BA890_03320 PF11892 Domain of unknown function (DUF3412) BA890_03320 PF03641 Possible lysine decarboxylase BA890_03320 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BA890_03325 PF00072 Response regulator receiver domain BA890_03325 PF00990 Diguanylate cyclase, GGDEF domain BA890_03335 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BA890_03335 PF14489 QueF-like protein BA890_03340 PF07348 Syd protein (SUKH-2) BA890_03345 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) BA890_03350 PF03180 NLPA lipoprotein BA890_03355 PF00528 Binding-protein-dependent transport system inner membrane component BA890_03360 PF09383 NIL domain BA890_03360 PF00005 ABC transporter BA890_03370 PF00356 Bacterial regulatory proteins, lacI family BA890_03375 PF00367 phosphotransferase system, EIIB BA890_03375 PF02378 Phosphotransferase system, EIIC BA890_03380 PF16657 Maltogenic Amylase, C-terminal domain BA890_03380 PF00128 Alpha amylase, catalytic domain BA890_03390 PF00464 Serine hydroxymethyltransferase BA890_03395 PF04055 Radical SAM superfamily BA890_03395 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BA890_03400 PF03099 Biotin/lipoate A/B protein ligase family BA890_03405 PF04359 Protein of unknown function (DUF493) BA890_03410 PF07943 Penicillin-binding protein 5, C-terminal domain BA890_03410 PF00768 D-alanyl-D-alanine carboxypeptidase BA890_03415 PF05036 Sporulation related domain BA890_03415 PF03330 Lytic transglycolase BA890_03420 PF01098 Cell cycle protein BA890_03425 PF03717 Penicillin-binding Protein dimerisation domain BA890_03425 PF00905 Penicillin binding protein transpeptidase domain BA890_03430 PF02590 Predicted SPOUT methyltransferase BA890_03440 PF14840 Processivity clamp loader gamma complex DNA pol III C-term BA890_03440 PF06144 DNA polymerase III, delta subunit BA890_03445 PF04390 Lipopolysaccharide-assembly BA890_03450 PF08264 Anticodon-binding domain of tRNA BA890_03450 PF00133 tRNA synthetases class I (I, L, M and V) BA890_03450 PF13603 Leucyl-tRNA synthetase, Domain 2 BA890_03455 PF07295 Zinc-ribbon containing domain BA890_03460 PF00795 Carbon-nitrogen hydrolase BA890_03465 PF00571 CBS domain BA890_03465 PF03471 Transporter associated domain BA890_03470 PF02130 Uncharacterized protein family UPF0054 BA890_03475 PF02562 PhoH-like protein BA890_03480 PF01938 TRAM domain BA890_03480 PF00919 Uncharacterized protein family UPF0004 BA890_03480 PF04055 Radical SAM superfamily BA890_03485 PF01494 FAD binding domain BA890_03595 PF01926 50S ribosome-binding GTPase BA890_03595 PF06071 Protein of unknown function (DUF933) BA890_03600 PF01195 Peptidyl-tRNA hydrolase BA890_03605 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BA890_03605 PF14572 Phosphoribosyl synthetase-associated domain BA890_03610 PF08544 GHMP kinases C terminal BA890_03610 PF00288 GHMP kinases N terminal domain BA890_03615 PF03550 Outer membrane lipoprotein LolB BA890_03620 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BA890_03620 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BA890_03620 PF01488 Shikimate / quinate 5-dehydrogenase BA890_03625 PF00472 RF-1 domain BA890_03625 PF03462 PCRF domain BA890_03630 PF17827 PrmC N-terminal domain BA890_03630 PF13847 Methyltransferase domain BA890_03635 PF04247 Invasion gene expression up-regulator, SirB BA890_03640 PF13369 Transglutaminase-like superfamily BA890_03645 PF00793 DAHP synthetase I family BA890_03650 PF00149 Calcineurin-like phosphoesterase BA890_03650 PF02872 5'-nucleotidase, C-terminal domain BA890_03655 PF04073 Aminoacyl-tRNA editing domain BA890_03660 PF01479 S4 domain BA890_03660 PF00849 RNA pseudouridylate synthase BA890_03665 PF01713 Smr domain BA890_03695 PF00403 Heavy-metal-associated domain BA890_03700 PF00749 tRNA synthetases class I (E and Q), catalytic domain BA890_03705 PF00691 OmpA family BA890_03705 PF01389 OmpA-like transmembrane domain BA890_03750 PF01584 CheW-like domain BA890_03750 PF00072 Response regulator receiver domain BA890_03755 PF03705 CheR methyltransferase, all-alpha domain BA890_03755 PF01739 CheR methyltransferase, SAM binding domain BA890_03760 PF00460 Flagella basal body rod protein BA890_03765 PF00460 Flagella basal body rod protein BA890_03765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA890_03770 PF13861 FlgD Tudor-like domain BA890_03770 PF03963 Flagellar hook capping protein - N-terminal region BA890_03770 PF13860 FlgD Ig-like domain BA890_03775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA890_03775 PF00460 Flagella basal body rod protein BA890_03775 PF07559 Flagellar basal body protein FlaE BA890_03780 PF00460 Flagella basal body rod protein BA890_03780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA890_03785 PF00460 Flagella basal body rod protein BA890_03785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA890_03790 PF02107 Flagellar L-ring protein BA890_03795 PF02119 Flagellar P-ring protein BA890_03800 PF10135 Rod binding protein BA890_03800 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BA890_03805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BA890_03805 PF07196 Flagellin hook IN motif BA890_03810 PF00669 Bacterial flagellin N-terminal helical region BA890_03815 PF00700 Bacterial flagellin C-terminal helical region BA890_03815 PF00669 Bacterial flagellin N-terminal helical region BA890_03815 PF07196 Flagellin hook IN motif BA890_03820 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BA890_03825 PF02896 PEP-utilising enzyme, TIM barrel domain BA890_03825 PF00391 PEP-utilising enzyme, mobile domain BA890_03825 PF05524 PEP-utilising enzyme, N-terminal BA890_03830 PF00381 PTS HPr component phosphorylation site BA890_03835 PF00291 Pyridoxal-phosphate dependent enzyme BA890_03845 PF04354 ZipA, C-terminal FtsZ-binding domain BA890_03850 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BA890_03850 PF00533 BRCA1 C Terminus (BRCT) domain BA890_03850 PF12826 Helix-hairpin-helix motif BA890_03850 PF01653 NAD-dependent DNA ligase adenylation domain BA890_03850 PF03120 NAD-dependent DNA ligase OB-fold domain BA890_03855 PF03573 outer membrane porin, OprD family BA890_03870 PF16200 C-terminal region of band_7 BA890_03870 PF01145 SPFH domain / Band 7 family BA890_03875 PF00085 Thioredoxin BA890_03880 PF00106 short chain dehydrogenase BA890_03885 PF01370 NAD dependent epimerase/dehydratase family BA890_03885 PF08338 Domain of unknown function (DUF1731) BA890_03890 PF07556 Protein of unknown function (DUF1538) BA890_03895 PF07556 Protein of unknown function (DUF1538) BA890_03915 PF12850 Calcineurin-like phosphoesterase superfamily domain BA890_03930 PF17323 Trans-membrane regulatory protein ToxS BA890_03935 PF00486 Transcriptional regulatory protein, C terminal BA890_03940 PF00183 Hsp90 protein BA890_03940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_03945 PF05191 Adenylate kinase, active site lid BA890_03950 PF00762 Ferrochelatase BA890_03955 PF00854 POT family BA890_03960 PF02357 Transcription termination factor nusG BA890_03965 PF13537 Glutamine amidotransferase domain BA890_03965 PF00733 Asparagine synthase BA890_03970 PF02254 TrkA-N domain BA890_03970 PF00999 Sodium/hydrogen exchanger family BA890_03975 PF01047 MarR family BA890_03975 PF00480 ROK family BA890_03980 PF01979 Amidohydrolase family BA890_03985 PF00367 phosphotransferase system, EIIB BA890_03985 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BA890_03985 PF02378 Phosphotransferase system, EIIC BA890_03990 PF00749 tRNA synthetases class I (E and Q), catalytic domain BA890_03990 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BA890_03995 PF01475 Ferric uptake regulator family BA890_04000 PF02774 Semialdehyde dehydrogenase, dimerisation domain BA890_04000 PF01118 Semialdehyde dehydrogenase, NAD binding domain BA890_04005 PF00258 Flavodoxin BA890_04015 PF12697 Alpha/beta hydrolase family BA890_04025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BA890_04025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BA890_04025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BA890_04025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BA890_04035 PF01784 NIF3 (NGG1p interacting factor 3) BA890_04040 PF00285 Citrate synthase, C-terminal domain BA890_04045 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BA890_04050 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BA890_04055 PF02910 Fumarate reductase flavoprotein C-term BA890_04055 PF00890 FAD binding domain BA890_04060 PF13085 2Fe-2S iron-sulfur cluster binding domain BA890_04065 PF16078 2-oxoglutarate dehydrogenase N-terminus BA890_04065 PF02779 Transketolase, pyrimidine binding domain BA890_04065 PF16870 2-oxoglutarate dehydrogenase C-terminal BA890_04065 PF00676 Dehydrogenase E1 component BA890_04070 PF02817 e3 binding domain BA890_04070 PF00364 Biotin-requiring enzyme BA890_04070 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BA890_04075 PF08442 ATP-grasp domain BA890_04075 PF00549 CoA-ligase BA890_04080 PF00549 CoA-ligase BA890_04080 PF02629 CoA binding domain BA890_04085 PF00950 ABC 3 transport family BA890_04090 PF00005 ABC transporter BA890_04095 PF01297 Zinc-uptake complex component A periplasmic BA890_04100 PF12833 Helix-turn-helix domain BA890_04100 PF02311 AraC-like ligand binding domain BA890_04105 PF04023 FeoA domain BA890_04110 PF17910 FeoB cytosolic helical domain BA890_04110 PF02421 Ferrous iron transport protein B BA890_04110 PF07664 Ferrous iron transport protein B C terminus BA890_04110 PF07670 Nucleoside recognition BA890_04125 PF03485 Arginyl tRNA synthetase N terminal domain BA890_04125 PF05746 DALR anticodon binding domain BA890_04125 PF00750 tRNA synthetases class I (R) BA890_04130 PF06185 YecM protein BA890_04140 PF00089 Trypsin BA890_04145 PF01842 ACT domain BA890_04145 PF00551 Formyl transferase BA890_04150 PF04851 Type III restriction enzyme, res subunit BA890_04150 PF13307 Helicase C-terminal domain BA890_04155 PF00814 Glycoprotease family BA890_04170 PF00561 alpha/beta hydrolase fold BA890_04175 PF13193 AMP-binding enzyme C-terminal domain BA890_04175 PF00501 AMP-binding enzyme BA890_04180 PF01612 3'-5' exonuclease BA890_04180 PF00570 HRDC domain BA890_04185 PF03776 Septum formation topological specificity factor MinE BA890_04190 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BA890_04195 PF05209 Septum formation inhibitor MinC, N-terminal domain BA890_04195 PF03775 Septum formation inhibitor MinC, C-terminal domain BA890_04200 PF05166 YcgL domain BA890_04205 PF13406 Transglycosylase SLT domain BA890_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_04210 PF03466 LysR substrate binding domain BA890_04215 PF07670 Nucleoside recognition BA890_04215 PF01773 Na+ dependent nucleoside transporter N-terminus BA890_04215 PF07662 Na+ dependent nucleoside transporter C-terminus BA890_04220 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BA890_04220 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BA890_04240 PF00425 chorismate binding enzyme BA890_04245 PF13193 AMP-binding enzyme C-terminal domain BA890_04245 PF00501 AMP-binding enzyme BA890_04250 PF00857 Isochorismatase family BA890_04250 PF00550 Phosphopantetheine attachment site BA890_04255 PF00501 AMP-binding enzyme BA890_04255 PF13193 AMP-binding enzyme C-terminal domain BA890_04255 PF00550 Phosphopantetheine attachment site BA890_04255 PF00501 AMP-binding enzyme BA890_04255 PF13193 AMP-binding enzyme C-terminal domain BA890_04255 PF00975 Thioesterase domain BA890_04255 PF00550 Phosphopantetheine attachment site BA890_04255 PF00668 Condensation domain BA890_04255 PF00668 Condensation domain BA890_04255 PF00975 Thioesterase domain BA890_04270 PF00593 TonB dependent receptor BA890_04270 PF07715 TonB-dependent Receptor Plug Domain BA890_04275 PF01595 Cyclin M transmembrane N-terminal domain BA890_04275 PF03471 Transporter associated domain BA890_04275 PF00571 CBS domain BA890_04280 PF00270 DEAD/DEAH box helicase BA890_04280 PF00271 Helicase conserved C-terminal domain BA890_04285 PF02254 TrkA-N domain BA890_04285 PF02080 TrkA-C domain BA890_04290 PF02386 Cation transport protein BA890_04300 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BA890_04305 PF00072 Response regulator receiver domain BA890_04305 PF00486 Transcriptional regulatory protein, C terminal BA890_04310 PF00672 HAMP domain BA890_04310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_04310 PF00512 His Kinase A (phospho-acceptor) domain BA890_04315 PF01547 Bacterial extracellular solute-binding protein BA890_04325 PF00528 Binding-protein-dependent transport system inner membrane component BA890_04330 PF00005 ABC transporter BA890_04330 PF03459 TOBE domain BA890_04330 PF17912 MalK OB fold domain BA890_04335 PF03480 Bacterial extracellular solute-binding protein, family 7 BA890_04340 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BA890_04345 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA890_04355 PF00072 Response regulator receiver domain BA890_04355 PF00158 Sigma-54 interaction domain BA890_04355 PF02954 Bacterial regulatory protein, Fis family BA890_04360 PF02743 Cache domain BA890_04360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_04360 PF00512 His Kinase A (phospho-acceptor) domain BA890_04370 PF05697 Bacterial trigger factor protein (TF) BA890_04370 PF05698 Bacterial trigger factor protein (TF) C-terminus BA890_04370 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BA890_04375 PF00574 Clp protease BA890_04380 PF07724 AAA domain (Cdc48 subfamily) BA890_04380 PF06689 ClpX C4-type zinc finger BA890_04380 PF10431 C-terminal, D2-small domain, of ClpB protein BA890_04385 PF05362 Lon protease (S16) C-terminal proteolytic domain BA890_04385 PF02190 ATP-dependent protease La (LON) substrate-binding domain BA890_04385 PF00004 ATPase family associated with various cellular activities (AAA) BA890_04390 PF00216 Bacterial DNA-binding protein BA890_04395 PF13145 PPIC-type PPIASE domain BA890_04415 PF01966 HD domain BA890_04415 PF13286 Phosphohydrolase-associated domain BA890_04425 PF00155 Aminotransferase class I and II BA890_04430 PF00425 chorismate binding enzyme BA890_04435 PF16582 Middle domain of thiamine pyrophosphate BA890_04435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BA890_04435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BA890_04440 PF12697 Alpha/beta hydrolase family BA890_04445 PF00378 Enoyl-CoA hydratase/isomerase BA890_04450 PF13378 Enolase C-terminal domain-like BA890_04455 PF13193 AMP-binding enzyme C-terminal domain BA890_04455 PF00501 AMP-binding enzyme BA890_04465 PF03601 Conserved hypothetical protein 698 BA890_04470 PF07690 Major Facilitator Superfamily BA890_04510 PF00529 HlyD membrane-fusion protein of T1SS BA890_04510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_04515 PF00873 AcrB/AcrD/AcrF family BA890_04525 PF00291 Pyridoxal-phosphate dependent enzyme BA890_04530 PF01037 Lrp/AsnC ligand binding domain BA890_04530 PF13404 AsnC-type helix-turn-helix domain BA890_04540 PF09619 Type III secretion system lipoprotein chaperone (YscW) BA890_04545 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BA890_04620 PF07693 KAP family P-loop domain BA890_04655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_04655 PF03466 LysR substrate binding domain BA890_04660 PF00232 Glycosyl hydrolase family 1 BA890_04665 PF01266 FAD dependent oxidoreductase BA890_04670 PF00120 Glutamine synthetase, catalytic domain BA890_04675 PF00120 Glutamine synthetase, catalytic domain BA890_04680 PF00202 Aminotransferase class-III BA890_04685 PF13416 Bacterial extracellular solute-binding protein BA890_04690 PF00005 ABC transporter BA890_04690 PF08402 TOBE domain BA890_04695 PF00528 Binding-protein-dependent transport system inner membrane component BA890_04700 PF00528 Binding-protein-dependent transport system inner membrane component BA890_04710 PF00171 Aldehyde dehydrogenase family BA890_04715 PF00958 GMP synthase C terminal domain BA890_04715 PF00117 Glutamine amidotransferase class-I BA890_04720 PF08032 RNA 2'-O ribose methyltransferase substrate binding BA890_04720 PF00588 SpoU rRNA Methylase family BA890_04725 PF00037 4Fe-4S binding domain BA890_04725 PF11953 Domain of unknown function (DUF3470) BA890_04735 PF00478 IMP dehydrogenase / GMP reductase domain BA890_04735 PF00571 CBS domain BA890_04740 PF00403 Heavy-metal-associated domain BA890_04745 PF01048 Phosphorylase superfamily BA890_04755 PF00672 HAMP domain BA890_04755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA890_04760 PF01230 HIT domain BA890_04775 PF08139 Prokaryotic membrane lipoprotein lipid attachment site BA890_04775 PF13036 Peptidoglycan-synthase activator LpoB BA890_04785 PF05728 Uncharacterised protein family (UPF0227) BA890_04790 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_04805 PF17757 UvrB interaction domain BA890_04805 PF03461 TRCF domain BA890_04805 PF02559 CarD-like/TRCF domain BA890_04805 PF00271 Helicase conserved C-terminal domain BA890_04805 PF00270 DEAD/DEAH box helicase BA890_04815 PF02687 FtsX-like permease family BA890_04815 PF12704 MacB-like periplasmic core domain BA890_04820 PF00005 ABC transporter BA890_04825 PF12704 MacB-like periplasmic core domain BA890_04825 PF02687 FtsX-like permease family BA890_04835 PF00753 Metallo-beta-lactamase superfamily BA890_04835 PF13567 Domain of unknown function (DUF4131) BA890_04835 PF03772 Competence protein BA890_04840 PF00664 ABC transporter transmembrane region BA890_04840 PF00005 ABC transporter BA890_04845 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BA890_04850 PF03966 Trm112p-like protein BA890_04855 PF02348 Cytidylyltransferase BA890_04860 PF04293 SpoVR like protein BA890_04865 PF04285 Protein of unknown function (DUF444) BA890_04870 PF06798 PrkA serine protein kinase C-terminal domain BA890_04870 PF08298 PrkA AAA domain BA890_04875 PF03887 YfbU domain BA890_04885 PF04055 Radical SAM superfamily BA890_04895 PF01228 Glycine radical BA890_04895 PF02901 Pyruvate formate lyase-like BA890_04910 PF00005 ABC transporter BA890_04915 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_04920 PF00528 Binding-protein-dependent transport system inner membrane component BA890_04925 PF00528 Binding-protein-dependent transport system inner membrane component BA890_04930 PF03372 Endonuclease/Exonuclease/phosphatase family BA890_04940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_04940 PF03466 LysR substrate binding domain BA890_04945 PF03788 LrgA family BA890_04950 PF04172 LrgB-like family BA890_04955 PF10689 Protein of unknown function (DUF2496) BA890_04960 PF07445 Primosomal replication protein priC BA890_04965 PF01925 Sulfite exporter TauE/SafE BA890_04970 PF13307 Helicase C-terminal domain BA890_04970 PF06733 DEAD_2 BA890_04980 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BA890_04985 PF00849 RNA pseudouridylate synthase BA890_04990 PF03971 Monomeric isocitrate dehydrogenase BA890_04995 PF00313 'Cold-shock' DNA-binding domain BA890_05000 PF02617 ATP-dependent Clp protease adaptor protein ClpS BA890_05005 PF17871 AAA lid domain BA890_05005 PF02861 Clp amino terminal domain, pathogenicity island component BA890_05005 PF10431 C-terminal, D2-small domain, of ClpB protein BA890_05005 PF00004 ATPase family associated with various cellular activities (AAA) BA890_05005 PF07724 AAA domain (Cdc48 subfamily) BA890_05010 PF01176 Translation initiation factor 1A / IF-1 BA890_05015 PF04376 Arginine-tRNA-protein transferase, N terminus BA890_05015 PF04377 Arginine-tRNA-protein transferase, C terminus BA890_05020 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BA890_05030 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BA890_05035 PF10692 Protein of unknown function (DUF2498) BA890_05040 PF01131 DNA topoisomerase BA890_05040 PF08272 Topoisomerase I zinc-ribbon-like BA890_05040 PF01751 Toprim domain BA890_05040 PF01396 Topoisomerase DNA binding C4 zinc finger BA890_05045 PF00483 Nucleotidyl transferase BA890_05050 PF08323 Starch synthase catalytic domain BA890_05050 PF00534 Glycosyl transferases group 1 BA890_05070 PF04994 TfoX C-terminal domain BA890_05070 PF04993 TfoX N-terminal domain BA890_05075 PF00356 Bacterial regulatory proteins, lacI family BA890_05080 PF02613 Nitrate reductase delta subunit BA890_05085 PF00072 Response regulator receiver domain BA890_05085 PF00486 Transcriptional regulatory protein, C terminal BA890_05090 PF02698 DUF218 domain BA890_05100 PF17193 MukF C-terminal domain BA890_05100 PF17192 MukF middle domain BA890_05100 PF03882 MukF winged-helix domain BA890_05105 PF04288 MukE-like family BA890_05110 PF04310 MukB N-terminal BA890_05110 PF16330 MukB hinge domain BA890_05115 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BA890_05115 PF12833 Helix-turn-helix domain BA890_05120 PF00171 Aldehyde dehydrogenase family BA890_05125 PF00732 GMC oxidoreductase BA890_05125 PF05199 GMC oxidoreductase BA890_05130 PF18030 RimK PreATP-grasp domain BA890_05130 PF08443 RimK-like ATP-grasp domain BA890_05140 PF08443 RimK-like ATP-grasp domain BA890_05140 PF18030 RimK PreATP-grasp domain BA890_05145 PF08003 Protein of unknown function (DUF1698) BA890_05150 PF13649 Methyltransferase domain BA890_05155 PF01904 Protein of unknown function DUF72 BA890_05160 PF00152 tRNA synthetases class II (D, K and N) BA890_05160 PF02938 GAD domain BA890_05160 PF01336 OB-fold nucleic acid binding domain BA890_05165 PF02075 Crossover junction endodeoxyribonuclease RuvC BA890_05170 PF07499 RuvA, C-terminal domain BA890_05170 PF01330 RuvA N terminal domain BA890_05175 PF05491 RuvB C-terminal winged helix domain BA890_05175 PF17864 RuvB AAA lid domain BA890_05175 PF05496 Holliday junction DNA helicase RuvB P-loop domain BA890_05180 PF01654 Cytochrome bd terminal oxidase subunit I BA890_05185 PF02322 Cytochrome bd terminal oxidase subunit II BA890_05190 PF08173 Membrane bound YbgT-like protein BA890_05200 PF03061 Thioesterase superfamily BA890_05205 PF01618 MotA/TolQ/ExbB proton channel family BA890_05210 PF02472 Biopolymer transport protein ExbD/TolR BA890_05220 PF07676 WD40-like Beta Propeller Repeat BA890_05220 PF04052 TolB amino-terminal domain BA890_05225 PF00691 OmpA family BA890_05230 PF16331 TolA binding protein trimerisation BA890_05230 PF13174 Tetratricopeptide repeat BA890_05235 PF02445 Quinolinate synthetase A protein BA890_05245 PF03994 Domain of Unknown Function (DUF350) BA890_05255 PF03738 Glutathionylspermidine synthase preATP-grasp BA890_05270 PF03150 Di-haem cytochrome c peroxidase BA890_05290 PF09308 LuxQ, periplasmic BA890_05290 PF00512 His Kinase A (phospho-acceptor) domain BA890_05290 PF00072 Response regulator receiver domain BA890_05290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_05295 PF06610 L-alanine exporter BA890_05310 PF13391 HNH endonuclease BA890_05315 PF00082 Subtilase family BA890_05320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_05320 PF03466 LysR substrate binding domain BA890_05325 PF16957 Malonate decarboxylase, alpha subunit, transporter BA890_05330 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BA890_05345 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG BA890_05350 PF00698 Acyl transferase domain BA890_05355 PF01381 Helix-turn-helix BA890_05355 PF07883 Cupin domain BA890_05360 PF03594 Benzoate membrane transport protein BA890_05365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_05365 PF00529 HlyD membrane-fusion protein of T1SS BA890_05370 PF00873 AcrB/AcrD/AcrF family BA890_05385 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) BA890_05395 PF03466 LysR substrate binding domain BA890_05395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_05405 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BA890_05405 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BA890_05410 PF01037 Lrp/AsnC ligand binding domain BA890_05415 PF01580 FtsK/SpoIIIE family BA890_05415 PF09397 Ftsk gamma domain BA890_05415 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BA890_05415 PF17854 FtsK alpha domain BA890_05420 PF03548 Outer membrane lipoprotein carrier protein LolA BA890_05425 PF00004 ATPase family associated with various cellular activities (AAA) BA890_05425 PF16193 AAA C-terminal domain BA890_05425 PF12002 MgsA AAA+ ATPase C terminal BA890_05430 PF02403 Seryl-tRNA synthetase N-terminal domain BA890_05430 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BA890_05435 PF00202 Aminotransferase class-III BA890_05440 PF04055 Radical SAM superfamily BA890_05440 PF06968 Biotin and Thiamin Synthesis associated domain BA890_05445 PF00155 Aminotransferase class I and II BA890_05450 PF08241 Methyltransferase domain BA890_05460 PF01435 Peptidase family M48 BA890_05470 PF00106 short chain dehydrogenase BA890_05505 PF00206 Lyase BA890_05505 PF08328 Adenylosuccinate lyase C-terminal BA890_05510 PF04356 Protein of unknown function (DUF489) BA890_05525 PF00294 pfkB family carbohydrate kinase BA890_05530 PF00816 H-NS histone family BA890_05535 PF03553 Na+/H+ antiporter family BA890_05545 PF00158 Sigma-54 interaction domain BA890_05545 PF02954 Bacterial regulatory protein, Fis family BA890_05545 PF00072 Response regulator receiver domain BA890_05550 PF08029 HisG, C-terminal domain BA890_05550 PF01634 ATP phosphoribosyltransferase BA890_05555 PF00815 Histidinol dehydrogenase BA890_05560 PF00155 Aminotransferase class I and II BA890_05565 PF08645 Polynucleotide kinase 3 phosphatase BA890_05565 PF00475 Imidazoleglycerol-phosphate dehydratase BA890_05570 PF00117 Glutamine amidotransferase class-I BA890_05575 PF00977 Histidine biosynthesis protein BA890_05580 PF00977 Histidine biosynthesis protein BA890_05585 PF01502 Phosphoribosyl-AMP cyclohydrolase BA890_05585 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BA890_05590 PF02810 SEC-C motif BA890_05595 PF00563 EAL domain BA890_05595 PF08668 HDOD domain BA890_05600 PF00149 Calcineurin-like phosphoesterase BA890_05605 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BA890_05610 PF09190 DALR domain BA890_05610 PF01406 tRNA synthetases class I (C) catalytic domain BA890_05615 PF00265 Thymidine kinase BA890_05620 PF02698 DUF218 domain BA890_05635 PF01226 Formate/nitrite transporter BA890_05640 PF03649 Uncharacterised protein family (UPF0014) BA890_05645 PF06796 Periplasmic nitrate reductase protein NapE BA890_05650 PF03264 NapC/NirT cytochrome c family, N-terminal region BA890_05655 PF01568 Molydopterin dinucleotide binding domain BA890_05655 PF18364 Molybdopterin oxidoreductase N-terminal domain BA890_05655 PF00384 Molybdopterin oxidoreductase BA890_05660 PF16874 Glycosyl hydrolase family 36 C-terminal domain BA890_05660 PF16875 Glycosyl hydrolase family 36 N-terminal domain BA890_05670 PF02833 DHHA2 domain BA890_05670 PF01368 DHH family BA890_05680 PF00005 ABC transporter BA890_05685 PF00005 ABC transporter BA890_05685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA890_05690 PF12911 N-terminal TM domain of oligopeptide transport permease C BA890_05690 PF00528 Binding-protein-dependent transport system inner membrane component BA890_05695 PF00528 Binding-protein-dependent transport system inner membrane component BA890_05700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA890_05705 PF02954 Bacterial regulatory protein, Fis family BA890_05705 PF00158 Sigma-54 interaction domain BA890_05710 PF04012 PspA/IM30 family BA890_05715 PF06667 Phage shock protein B BA890_05720 PF04024 PspC domain BA890_05725 PF13533 Biotin-lipoyl like BA890_05730 PF13533 Biotin-lipoyl like BA890_05735 PF00873 AcrB/AcrD/AcrF family BA890_05740 PF03352 Methyladenine glycosylase BA890_05745 PF01053 Cys/Met metabolism PLP-dependent enzyme BA890_05750 PF13396 Phospholipase_D-nuclease N-terminal BA890_05750 PF13091 PLD-like domain BA890_05755 PF00209 Sodium:neurotransmitter symporter family BA890_05760 PF00849 RNA pseudouridylate synthase BA890_05770 PF00175 Oxidoreductase NAD-binding domain BA890_05770 PF00111 2Fe-2S iron-sulfur cluster binding domain BA890_05770 PF00970 Oxidoreductase FAD-binding domain BA890_05775 PF03063 Prismane/CO dehydrogenase family BA890_05780 PF00158 Sigma-54 interaction domain BA890_05780 PF01590 GAF domain BA890_05790 PF01066 CDP-alcohol phosphatidyltransferase BA890_05795 PF00005 ABC transporter BA890_05800 PF00528 Binding-protein-dependent transport system inner membrane component BA890_05805 PF13416 Bacterial extracellular solute-binding protein BA890_05815 PF06945 Protein of unknown function (DUF1289) BA890_05825 PF02872 5'-nucleotidase, C-terminal domain BA890_05825 PF00149 Calcineurin-like phosphoesterase BA890_05830 PF01386 Ribosomal L25p family BA890_05835 PF13756 Stimulus-sensing domain BA890_05835 PF13755 Sensor N-terminal transmembrane domain BA890_05835 PF00512 His Kinase A (phospho-acceptor) domain BA890_05835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_05835 PF00672 HAMP domain BA890_05840 PF00072 Response regulator receiver domain BA890_05840 PF00486 Transcriptional regulatory protein, C terminal BA890_05850 PF04851 Type III restriction enzyme, res subunit BA890_05850 PF00271 Helicase conserved C-terminal domain BA890_05855 PF01479 S4 domain BA890_05855 PF00849 RNA pseudouridylate synthase BA890_05860 PF07690 Major Facilitator Superfamily BA890_05870 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB BA890_05875 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) BA890_05890 PF03264 NapC/NirT cytochrome c family, N-terminal region BA890_05895 PF11066 Protein of unknown function (DUF2867) BA890_05895 PF13460 NAD(P)H-binding BA890_05900 PF01554 MatE BA890_05905 PF00005 ABC transporter BA890_05920 PF06965 Na+/H+ antiporter 1 BA890_05925 PF16295 Tetracyclin repressor-like, C-terminal domain BA890_05925 PF00440 Bacterial regulatory proteins, tetR family BA890_05930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BA890_05930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BA890_05930 PF02770 Acyl-CoA dehydrogenase, middle domain BA890_05930 PF09317 Domain of unknown function (DUF1974) BA890_05935 PF07055 Enoyl reductase FAD binding domain BA890_05935 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BA890_05935 PF12241 Trans-2-enoyl-CoA reductase catalytic region BA890_05940 PF02080 TrkA-C domain BA890_05940 PF06826 Predicted Permease Membrane Region BA890_05945 PF00462 Glutaredoxin BA890_05950 PF00171 Aldehyde dehydrogenase family BA890_05950 PF00465 Iron-containing alcohol dehydrogenase BA890_05955 PF01418 Helix-turn-helix domain, rpiR family BA890_05955 PF01380 SIS domain BA890_05960 PF00282 Pyridoxal-dependent decarboxylase conserved domain BA890_05970 PF03956 Lysine exporter LysO BA890_05980 PF04993 TfoX N-terminal domain BA890_05980 PF04994 TfoX C-terminal domain BA890_05995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_05995 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_05995 PF00512 His Kinase A (phospho-acceptor) domain BA890_06005 PF00266 Aminotransferase class-V BA890_06010 PF00291 Pyridoxal-phosphate dependent enzyme BA890_06015 PF00005 ABC transporter BA890_06015 PF00664 ABC transporter transmembrane region BA890_06020 PF00005 ABC transporter BA890_06020 PF00664 ABC transporter transmembrane region BA890_06025 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_06035 PF00266 Aminotransferase class-V BA890_06045 PF00939 Sodium:sulfate symporter transmembrane region BA890_06050 PF02698 DUF218 domain BA890_06055 PF00390 Malic enzyme, N-terminal domain BA890_06055 PF03949 Malic enzyme, NAD binding domain BA890_06060 PF00271 Helicase conserved C-terminal domain BA890_06060 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BA890_06060 PF04408 Helicase associated domain (HA2) BA890_06060 PF11898 Domain of unknown function (DUF3418) BA890_06060 PF00270 DEAD/DEAH box helicase BA890_06070 PF09423 PhoD-like phosphatase BA890_06070 PF16655 PhoD-like phosphatase, N-terminal domain BA890_06075 PF01259 SAICAR synthetase BA890_06095 PF00691 OmpA family BA890_06110 PF02913 FAD linked oxidases, C-terminal domain BA890_06110 PF01565 FAD binding domain BA890_06110 PF13183 4Fe-4S dicluster domain BA890_06120 PF03466 LysR substrate binding domain BA890_06120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_06125 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BA890_06130 PF13409 Glutathione S-transferase, N-terminal domain BA890_06140 PF00491 Arginase family BA890_06145 PF01979 Amidohydrolase family BA890_06150 PF00392 Bacterial regulatory proteins, gntR family BA890_06150 PF07702 UTRA domain BA890_06165 PF02824 TGS domain BA890_06165 PF03129 Anticodon binding domain BA890_06165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BA890_06165 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BA890_06170 PF00707 Translation initiation factor IF-3, C-terminal domain BA890_06170 PF05198 Translation initiation factor IF-3, N-terminal domain BA890_06175 PF01632 Ribosomal protein L35 BA890_06180 PF00453 Ribosomal protein L20 BA890_06190 PF01409 tRNA synthetases class II core domain (F) BA890_06190 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BA890_06195 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BA890_06195 PF03483 B3/4 domain BA890_06195 PF03484 tRNA synthetase B5 domain BA890_06195 PF01588 Putative tRNA binding domain BA890_06195 PF03147 Ferredoxin-fold anticodon binding domain BA890_06200 PF00251 Glycosyl hydrolases family 32 N-terminal domain BA890_06200 PF08244 Glycosyl hydrolases family 32 C terminal BA890_06205 PF00294 pfkB family carbohydrate kinase BA890_06215 PF00356 Bacterial regulatory proteins, lacI family BA890_06215 PF13407 Periplasmic binding protein domain BA890_06225 PF00216 Bacterial DNA-binding protein BA890_06235 PF05724 Thiopurine S-methyltransferase (TPMT) BA890_06240 PF02222 ATP-grasp domain BA890_06245 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region BA890_06245 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BA890_06250 PF04172 LrgB-like family BA890_06255 PF03788 LrgA family BA890_06260 PF00929 Exonuclease BA890_06260 PF08411 Exonuclease C-terminal BA890_06315 PF00717 Peptidase S24-like BA890_06315 PF01381 Helix-turn-helix BA890_06330 PF01695 IstB-like ATP binding protein BA890_06490 PF08003 Protein of unknown function (DUF1698) BA890_06510 PF13460 NAD(P)H-binding BA890_06515 PF01613 Flavin reductase like domain BA890_06520 PF02277 Phosphoribosyltransferase BA890_06525 PF02654 Cobalamin-5-phosphate synthase BA890_06530 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BA890_06545 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BA890_06550 PF01032 FecCD transport family BA890_06555 PF00005 ABC transporter BA890_06575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_06575 PF03466 LysR substrate binding domain BA890_06585 PF01863 Protein of unknown function DUF45 BA890_06590 PF05971 RNA methyltransferase BA890_06645 PF00005 ABC transporter BA890_06650 PF01032 FecCD transport family BA890_06665 PF07687 Peptidase dimerisation domain BA890_06665 PF01546 Peptidase family M20/M25/M40 BA890_06670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA890_06675 PF04209 homogentisate 1,2-dioxygenase BA890_06685 PF02798 Glutathione S-transferase, N-terminal domain BA890_06685 PF14497 Glutathione S-transferase, C-terminal domain BA890_06710 PF13618 Gluconate 2-dehydrogenase subunit 3 BA890_06715 PF00732 GMC oxidoreductase BA890_06715 PF05199 GMC oxidoreductase BA890_06720 PF00034 Cytochrome c BA890_06720 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BA890_06725 PF07690 Major Facilitator Superfamily BA890_06750 PF12833 Helix-turn-helix domain BA890_06755 PF14525 AraC-binding-like domain BA890_06755 PF12833 Helix-turn-helix domain BA890_06775 PF00005 ABC transporter BA890_06780 PF02653 Branched-chain amino acid transport system / permease component BA890_06785 PF02653 Branched-chain amino acid transport system / permease component BA890_06795 PF02311 AraC-like ligand binding domain BA890_06795 PF12833 Helix-turn-helix domain BA890_06805 PF00356 Bacterial regulatory proteins, lacI family BA890_06810 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BA890_06810 PF00367 phosphotransferase system, EIIB BA890_06810 PF02378 Phosphotransferase system, EIIC BA890_06815 PF00232 Glycosyl hydrolase family 1 BA890_06820 PF02264 LamB porin BA890_06825 PF00474 Sodium:solute symporter family BA890_06830 PF06196 Protein of unknown function (DUF997) BA890_06840 PF12833 Helix-turn-helix domain BA890_06845 PF01810 LysE type translocator BA890_06850 PF05036 Sporulation related domain BA890_06850 PF03330 Lytic transglycolase BA890_06855 PF07969 Amidohydrolase family BA890_06860 PF08220 DeoR-like helix-turn-helix domain BA890_06860 PF00455 DeoR C terminal sensor domain BA890_06870 PF13181 Tetratricopeptide repeat BA890_06870 PF07719 Tetratricopeptide repeat BA890_06880 PF06039 Malate:quinone oxidoreductase (Mqo) BA890_06890 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_06890 PF14759 Reductase C-terminal BA890_06895 PF00106 short chain dehydrogenase BA890_06900 PF00355 Rieske [2Fe-2S] domain BA890_06905 PF00866 Ring hydroxylating beta subunit BA890_06910 PF00355 Rieske [2Fe-2S] domain BA890_06910 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BA890_06915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_06915 PF03466 LysR substrate binding domain BA890_06920 PF01434 Peptidase family M41 BA890_06920 PF17862 AAA+ lid domain BA890_06920 PF00004 ATPase family associated with various cellular activities (AAA) BA890_07025 PF01177 Asp/Glu/Hydantoin racemase BA890_07035 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BA890_07040 PF01425 Amidase BA890_07050 PF00266 Aminotransferase class-V BA890_07055 PF07687 Peptidase dimerisation domain BA890_07055 PF01546 Peptidase family M20/M25/M40 BA890_07065 PF02417 Chromate transporter BA890_07070 PF02417 Chromate transporter BA890_07075 PF01494 FAD binding domain BA890_07080 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BA890_07085 PF12697 Alpha/beta hydrolase family BA890_07090 PF01557 Fumarylacetoacetate (FAA) hydrolase family BA890_07095 PF01118 Semialdehyde dehydrogenase, NAD binding domain BA890_07095 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation BA890_07100 PF00682 HMGL-like BA890_07100 PF07836 DmpG-like communication domain BA890_07105 PF00083 Sugar (and other) transporter BA890_07110 PF09339 IclR helix-turn-helix domain BA890_07110 PF01614 Bacterial transcriptional regulator BA890_07120 PF02230 Phospholipase/Carboxylesterase BA890_07125 PF00072 Response regulator receiver domain BA890_07125 PF00486 Transcriptional regulatory protein, C terminal BA890_07130 PF00989 PAS fold BA890_07130 PF00072 Response regulator receiver domain BA890_07130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_07130 PF00512 His Kinase A (phospho-acceptor) domain BA890_07130 PF18415 Histidine kinase receptor ArcB trans-membrane domain BA890_07130 PF01627 Hpt domain BA890_07140 PF02653 Branched-chain amino acid transport system / permease component BA890_07150 PF12399 Branched-chain amino acid ATP-binding cassette transporter BA890_07150 PF00005 ABC transporter BA890_07155 PF00005 ABC transporter BA890_07160 PF01774 UreD urease accessory protein BA890_07165 PF00547 Urease, gamma subunit BA890_07170 PF00699 Urease beta subunit BA890_07175 PF01979 Amidohydrolase family BA890_07175 PF00449 Urease alpha-subunit, N-terminal domain BA890_07180 PF02814 UreE urease accessory protein, N-terminal domain BA890_07180 PF05194 UreE urease accessory protein, C-terminal domain BA890_07185 PF01730 UreF BA890_07190 PF02492 CobW/HypB/UreG, nucleotide-binding domain BA890_07200 PF00939 Sodium:sulfate symporter transmembrane region BA890_07205 PF00512 His Kinase A (phospho-acceptor) domain BA890_07205 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_07205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_07225 PF03222 Tryptophan/tyrosine permease family BA890_07230 PF00072 Response regulator receiver domain BA890_07230 PF01966 HD domain BA890_07245 PF00664 ABC transporter transmembrane region BA890_07245 PF00005 ABC transporter BA890_07250 PF00005 ABC transporter BA890_07250 PF00664 ABC transporter transmembrane region BA890_07265 PF00012 Hsp70 protein BA890_07270 PF00012 Hsp70 protein BA890_07305 PF02525 Flavodoxin-like fold BA890_07310 PF00270 DEAD/DEAH box helicase BA890_07310 PF04408 Helicase associated domain (HA2) BA890_07310 PF00271 Helicase conserved C-terminal domain BA890_07310 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BA890_07310 PF11898 Domain of unknown function (DUF3418) BA890_07325 PF02028 BCCT, betaine/carnitine/choline family transporter BA890_07335 PF01068 ATP dependent DNA ligase domain BA890_07335 PF14743 DNA ligase OB-like domain BA890_07345 PF01554 MatE BA890_07350 PF00677 Lumazine binding domain BA890_07365 PF00072 Response regulator receiver domain BA890_07365 PF00486 Transcriptional regulatory protein, C terminal BA890_07370 PF00990 Diguanylate cyclase, GGDEF domain BA890_07370 PF05230 MASE2 domain BA890_07380 PF00877 NlpC/P60 family BA890_07385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA890_07385 PF00672 HAMP domain BA890_07385 PF12729 Four helix bundle sensory module for signal transduction BA890_07410 PF00480 ROK family BA890_07425 PF03453 MoeA N-terminal region (domain I and II) BA890_07425 PF00994 Probable molybdopterin binding domain BA890_07425 PF03454 MoeA C-terminal region (domain IV) BA890_07430 PF12804 MobA-like NTP transferase domain BA890_07435 PF00005 ABC transporter BA890_07435 PF08402 TOBE domain BA890_07440 PF00528 Binding-protein-dependent transport system inner membrane component BA890_07445 PF12849 PBP superfamily domain BA890_07450 PF00072 Response regulator receiver domain BA890_07450 PF00158 Sigma-54 interaction domain BA890_07450 PF02954 Bacterial regulatory protein, Fis family BA890_07455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_07455 PF00512 His Kinase A (phospho-acceptor) domain BA890_07460 PF00005 ABC transporter BA890_07460 PF12848 ABC transporter BA890_07465 PF02634 FdhD/NarQ family BA890_07495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BA890_07495 PF01568 Molydopterin dinucleotide binding domain BA890_07495 PF00384 Molybdopterin oxidoreductase BA890_07500 PF13247 4Fe-4S dicluster domain BA890_07515 PF12464 Maltose acetyltransferase BA890_07515 PF00132 Bacterial transferase hexapeptide (six repeats) BA890_07520 PF12833 Helix-turn-helix domain BA890_07525 PF01554 MatE BA890_07530 PF00909 Ammonium Transporter Family BA890_07535 PF02146 Sir2 family BA890_07540 PF13416 Bacterial extracellular solute-binding protein BA890_07545 PF13416 Bacterial extracellular solute-binding protein BA890_07550 PF00528 Binding-protein-dependent transport system inner membrane component BA890_07555 PF00528 Binding-protein-dependent transport system inner membrane component BA890_07560 PF08402 TOBE domain BA890_07560 PF00005 ABC transporter BA890_07575 PF01171 PP-loop family BA890_07580 PF00582 Universal stress protein family BA890_07585 PF13545 Crp-like helix-turn-helix domain BA890_07585 PF00027 Cyclic nucleotide-binding domain BA890_07600 PF00403 Heavy-metal-associated domain BA890_07610 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BA890_07610 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP BA890_07625 PF00115 Cytochrome C and Quinol oxidase polypeptide I BA890_07640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_07640 PF00072 Response regulator receiver domain BA890_07640 PF00512 His Kinase A (phospho-acceptor) domain BA890_07640 PF09308 LuxQ, periplasmic BA890_07660 PF08000 Bacterial PH domain BA890_07695 PF06303 MatP N-terminal domain BA890_07695 PF17414 MatP C-terminal ribbon-helix-helix domain BA890_07700 PF05362 Lon protease (S16) C-terminal proteolytic domain BA890_07700 PF13654 AAA domain BA890_07705 PF07977 FabA-like domain BA890_07710 PF04957 Ribosome modulation factor BA890_07730 PF10672 S-adenosylmethionine-dependent methyltransferase BA890_07730 PF02926 THUMP domain BA890_07730 PF01170 Putative RNA methylase family UPF0020 BA890_07735 PF07126 Cell-division protein ZapC BA890_07740 PF01180 Dihydroorotate dehydrogenase BA890_07745 PF05088 Bacterial NAD-glutamate dehydrogenase BA890_07750 PF01433 Peptidase family M1 domain BA890_07750 PF11940 Domain of unknown function (DUF3458) Ig-like fold BA890_07750 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BA890_07760 PF11818 C-terminal domain of tail specific protease (DUF3340) BA890_07760 PF00595 PDZ domain BA890_07760 PF03572 Peptidase family S41 BA890_07760 PF17804 Tail specific protease N-terminal domain BA890_07765 PF04352 ProQ/FINO family BA890_07765 PF17516 ProQ C-terminal domain BA890_07770 PF13185 GAF domain BA890_07775 PF00005 ABC transporter BA890_07775 PF00664 ABC transporter transmembrane region BA890_07780 PF04403 Paraquat-inducible protein A BA890_07785 PF02470 MlaD protein BA890_07790 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF BA890_07790 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF BA890_07790 PF01189 16S rRNA methyltransferase RsmB/F BA890_07810 PF00793 DAHP synthetase I family BA890_07815 PF04461 Protein of unknown function (DUF520) BA890_07820 PF14824 Sirohaem biosynthesis protein central BA890_07820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BA890_07820 PF10414 Sirohaem synthase dimerisation region BA890_07830 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_07835 PF00528 Binding-protein-dependent transport system inner membrane component BA890_07840 PF00528 Binding-protein-dependent transport system inner membrane component BA890_07845 PF00005 ABC transporter BA890_07850 PF01027 Inhibitor of apoptosis-promoting Bax1 BA890_07860 PF04358 DsrC like protein BA890_07865 PF00708 Acylphosphatase BA890_07870 PF10672 S-adenosylmethionine-dependent methyltransferase BA890_07870 PF17785 PUA-like domain BA890_07885 PF00691 OmpA family BA890_07895 PF00990 Diguanylate cyclase, GGDEF domain BA890_07895 PF17158 Membrane-associated sensor, integral membrane domain BA890_07900 PF06508 Queuosine biosynthesis protein QueC BA890_07905 PF04055 Radical SAM superfamily BA890_07920 PF14602 Hexapeptide repeat of succinyl-transferase BA890_07920 PF12464 Maltose acetyltransferase BA890_07945 PF00563 EAL domain BA890_07945 PF00990 Diguanylate cyclase, GGDEF domain BA890_07945 PF13426 PAS domain BA890_07950 PF01546 Peptidase family M20/M25/M40 BA890_07950 PF07687 Peptidase dimerisation domain BA890_07960 PF07715 TonB-dependent Receptor Plug Domain BA890_07960 PF00593 TonB dependent receptor BA890_07965 PF00293 NUDIX domain BA890_07975 PF00501 AMP-binding enzyme BA890_07975 PF16177 Acetyl-coenzyme A synthetase N-terminus BA890_07975 PF13193 AMP-binding enzyme C-terminal domain BA890_07980 PF04303 PrpF protein BA890_07985 PF00694 Aconitase C-terminal domain BA890_07985 PF00330 Aconitase family (aconitate hydratase) BA890_07990 PF00285 Citrate synthase, C-terminal domain BA890_08020 PF01970 Tripartite tricarboxylate transporter TctA family BA890_08025 PF01925 Sulfite exporter TauE/SafE BA890_08030 PF16868 NMT1-like family BA890_08035 PF00171 Aldehyde dehydrogenase family BA890_08040 PF00158 Sigma-54 interaction domain BA890_08040 PF02954 Bacterial regulatory protein, Fis family BA890_08040 PF01590 GAF domain BA890_08050 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BA890_08050 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BA890_08055 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BA890_08060 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BA890_08060 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BA890_08065 PF12833 Helix-turn-helix domain BA890_08070 PF00593 TonB dependent receptor BA890_08070 PF07715 TonB-dependent Receptor Plug Domain BA890_08075 PF12431 Transcriptional regulator BA890_08075 PF00072 Response regulator receiver domain BA890_08080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_08080 PF00989 PAS fold BA890_08080 PF17203 Single cache domain 3 BA890_08080 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BA890_08095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_08110 PF13840 ACT domain BA890_08110 PF00696 Amino acid kinase family BA890_08115 PF06339 Ectoine synthase BA890_08120 PF00202 Aminotransferase class-III BA890_08125 PF00583 Acetyltransferase (GNAT) family BA890_08130 PF00571 CBS domain BA890_08130 PF00005 ABC transporter BA890_08135 PF00528 Binding-protein-dependent transport system inner membrane component BA890_08140 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BA890_08150 PF00501 AMP-binding enzyme BA890_08160 PF00106 short chain dehydrogenase BA890_08170 PF00486 Transcriptional regulatory protein, C terminal BA890_08170 PF00072 Response regulator receiver domain BA890_08175 PF08521 Two-component sensor kinase N-terminal BA890_08175 PF00512 His Kinase A (phospho-acceptor) domain BA890_08175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_08180 PF00884 Sulfatase BA890_08195 PF00082 Subtilase family BA890_08195 PF05922 Peptidase inhibitor I9 BA890_08200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_08200 PF03466 LysR substrate binding domain BA890_08205 PF00881 Nitroreductase family BA890_08210 PF01235 Sodium:alanine symporter family BA890_08225 PF00296 Luciferase-like monooxygenase BA890_08230 PF01810 LysE type translocator BA890_08235 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BA890_08240 PF08546 Ketopantoate reductase PanE/ApbA C terminal BA890_08240 PF02558 Ketopantoate reductase PanE/ApbA BA890_08250 PF13533 Biotin-lipoyl like BA890_08255 PF03279 Bacterial lipid A biosynthesis acyltransferase BA890_08265 PF04204 Homoserine O-succinyltransferase BA890_08275 PF01627 Hpt domain BA890_08275 PF00672 HAMP domain BA890_08275 PF00512 His Kinase A (phospho-acceptor) domain BA890_08275 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BA890_08275 PF00072 Response regulator receiver domain BA890_08275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_08300 PF04237 YjbR BA890_08305 PF01047 MarR family BA890_08315 PF00202 Aminotransferase class-III BA890_08320 PF00171 Aldehyde dehydrogenase family BA890_08325 PF04371 Porphyromonas-type peptidyl-arginine deiminase BA890_08330 PF00795 Carbon-nitrogen hydrolase BA890_08335 PF01266 FAD dependent oxidoreductase BA890_08340 PF00171 Aldehyde dehydrogenase family BA890_08345 PF07883 Cupin domain BA890_08345 PF01381 Helix-turn-helix BA890_08350 PF07722 Peptidase C26 BA890_08355 PF00120 Glutamine synthetase, catalytic domain BA890_08360 PF03553 Na+/H+ antiporter family BA890_08375 PF07969 Amidohydrolase family BA890_08385 PF01112 Asparaginase BA890_08390 PF00005 ABC transporter BA890_08395 PF00528 Binding-protein-dependent transport system inner membrane component BA890_08400 PF00528 Binding-protein-dependent transport system inner membrane component BA890_08405 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_08420 PF08274 PhnA Zinc-Ribbon BA890_08420 PF03831 PhnA domain BA890_08425 PF01411 tRNA synthetases class II (A) BA890_08425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BA890_08455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA890_08490 PF12833 Helix-turn-helix domain BA890_08490 PF01965 DJ-1/PfpI family BA890_08500 PF00440 Bacterial regulatory proteins, tetR family BA890_08500 PF17754 MftR C-terminal domain BA890_08510 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) BA890_08530 PF00728 Glycosyl hydrolase family 20, catalytic domain BA890_08530 PF03173 Putative carbohydrate binding domain BA890_08530 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain BA890_08530 PF02838 Glycosyl hydrolase family 20, domain 2 BA890_08535 PF00072 Response regulator receiver domain BA890_08535 PF00486 Transcriptional regulatory protein, C terminal BA890_08540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_08540 PF00512 His Kinase A (phospho-acceptor) domain BA890_08540 PF00672 HAMP domain BA890_08555 PF00171 Aldehyde dehydrogenase family BA890_08565 PF00465 Iron-containing alcohol dehydrogenase BA890_08575 PF02142 MGS-like domain BA890_08580 PF04962 KduI/IolB family BA890_08585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BA890_08585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BA890_08590 PF00083 Sugar (and other) transporter BA890_08595 PF01261 Xylose isomerase-like TIM barrel BA890_08600 PF00356 Bacterial regulatory proteins, lacI family BA890_08605 PF01261 Xylose isomerase-like TIM barrel BA890_08610 PF00294 pfkB family carbohydrate kinase BA890_08615 PF00465 Iron-containing alcohol dehydrogenase BA890_08615 PF00171 Aldehyde dehydrogenase family BA890_08620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BA890_08620 PF00205 Thiamine pyrophosphate enzyme, central domain BA890_08620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BA890_08625 PF00294 pfkB family carbohydrate kinase BA890_08640 PF13417 Glutathione S-transferase, N-terminal domain BA890_08640 PF04399 Glutaredoxin 2, C terminal domain BA890_08655 PF01740 STAS domain BA890_08660 PF01389 OmpA-like transmembrane domain BA890_08660 PF00691 OmpA family BA890_08680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_08680 PF00512 His Kinase A (phospho-acceptor) domain BA890_08680 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BA890_08680 PF00072 Response regulator receiver domain BA890_08680 PF01627 Hpt domain BA890_08680 PF00672 HAMP domain BA890_08685 PF00072 Response regulator receiver domain BA890_08685 PF00158 Sigma-54 interaction domain BA890_08685 PF02954 Bacterial regulatory protein, Fis family BA890_08725 PF02706 Chain length determinant protein BA890_08725 PF13614 AAA domain BA890_08725 PF13807 G-rich domain on putative tyrosine kinase BA890_08730 PF00534 Glycosyl transferases group 1 BA890_08730 PF13439 Glycosyltransferase Family 4 BA890_08740 PF02397 Bacterial sugar transferase BA890_08755 PF02278 Polysaccharide lyase family 8, super-sandwich domain BA890_08755 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain BA890_08755 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain BA890_08795 PF13649 Methyltransferase domain BA890_08845 PF02413 Caudovirales tail fibre assembly protein, lambda gpK BA890_08850 PF07471 Phage DNA packaging protein Nu1 BA890_08895 PF06147 Protein of unknown function (DUF968) BA890_08945 PF00717 Peptidase S24-like BA890_08945 PF01381 Helix-turn-helix BA890_08970 PF10065 Uncharacterized conserved protein (DUF2303) BA890_09000 PF12167 Arm DNA-binding domain BA890_09000 PF00589 Phage integrase family BA890_09015 PF13302 Acetyltransferase (GNAT) domain BA890_09020 PF00158 Sigma-54 interaction domain BA890_09020 PF18024 Helix-turn-helix domain BA890_09025 PF05128 Domain of unknown function (DUF697) BA890_09030 PF04317 YcjX-like family, DUF463 BA890_09045 PF00425 chorismate binding enzyme BA890_09045 PF04715 Anthranilate synthase component I, N terminal region BA890_09050 PF00293 NUDIX domain BA890_09055 PF03222 Tryptophan/tyrosine permease family BA890_09060 PF03313 Serine dehydratase alpha chain BA890_09060 PF03315 Serine dehydratase beta chain BA890_09065 PF01242 6-pyruvoyl tetrahydropterin synthase BA890_09070 PF01336 OB-fold nucleic acid binding domain BA890_09070 PF00152 tRNA synthetases class II (D, K and N) BA890_09080 PF00392 Bacterial regulatory proteins, gntR family BA890_09080 PF00155 Aminotransferase class I and II BA890_09095 PF00155 Aminotransferase class I and II BA890_09110 PF00929 Exonuclease BA890_09110 PF02811 PHP domain BA890_09110 PF14579 Helix-hairpin-helix motif BA890_09110 PF07733 Bacterial DNA polymerase III alpha NTPase domain BA890_09110 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BA890_09115 PF02743 Cache domain BA890_09115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA890_09115 PF00672 HAMP domain BA890_09120 PF02028 BCCT, betaine/carnitine/choline family transporter BA890_09125 PF01047 MarR family BA890_09130 PF00072 Response regulator receiver domain BA890_09130 PF00196 Bacterial regulatory proteins, luxR family BA890_09135 PF17200 Single Cache domain 2 BA890_09135 PF07730 Histidine kinase BA890_09140 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA890_09150 PF03480 Bacterial extracellular solute-binding protein, family 7 BA890_09165 PF00753 Metallo-beta-lactamase superfamily BA890_09170 PF05951 Bacterial protein of unknown function (DUF882) BA890_09175 PF03734 L,D-transpeptidase catalytic domain BA890_09175 PF01471 Putative peptidoglycan binding domain BA890_09200 PF00925 GTP cyclohydrolase II BA890_09205 PF00521 DNA gyrase/topoisomerase IV, subunit A BA890_09205 PF03989 DNA gyrase C-terminal domain, beta-propeller BA890_09215 PF03477 ATP cone domain BA890_09215 PF02867 Ribonucleotide reductase, barrel domain BA890_09215 PF00317 Ribonucleotide reductase, all-alpha domain BA890_09220 PF00268 Ribonucleotide reductase, small chain BA890_09225 PF00970 Oxidoreductase FAD-binding domain BA890_09225 PF00175 Oxidoreductase NAD-binding domain BA890_09225 PF00111 2Fe-2S iron-sulfur cluster binding domain BA890_09230 PF16363 GDP-mannose 4,6 dehydratase BA890_09235 PF12706 Beta-lactamase superfamily domain BA890_09245 PF00994 Probable molybdopterin binding domain BA890_09260 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BA890_09265 PF03435 Saccharopine dehydrogenase NADP binding domain BA890_09265 PF16653 Saccharopine dehydrogenase C-terminal domain BA890_09270 PF00202 Aminotransferase class-III BA890_09295 PF01066 CDP-alcohol phosphatidyltransferase BA890_09300 PF01541 GIY-YIG catalytic domain BA890_09300 PF02151 UvrB/uvrC motif BA890_09300 PF08459 UvrC Helix-hairpin-helix N-terminal BA890_09305 PF00196 Bacterial regulatory proteins, luxR family BA890_09305 PF00072 Response regulator receiver domain BA890_09310 PF03104 DNA polymerase family B, exonuclease domain BA890_09310 PF00136 DNA polymerase family B BA890_09320 PF08207 Elongation factor P (EF-P) KOW-like domain BA890_09320 PF01132 Elongation factor P (EF-P) OB domain BA890_09320 PF09285 Elongation factor P, C-terminal BA890_09325 PF04269 Protein of unknown function, DUF440 BA890_09330 PF00849 RNA pseudouridylate synthase BA890_09330 PF01479 S4 domain BA890_09340 PF01300 Telomere recombination BA890_09345 PF02811 PHP domain BA890_09350 PF08056 Tryptophan operon leader peptide BA890_09355 PF04715 Anthranilate synthase component I, N terminal region BA890_09355 PF00425 chorismate binding enzyme BA890_09360 PF00117 Glutamine amidotransferase class-I BA890_09365 PF00591 Glycosyl transferase family, a/b domain BA890_09365 PF02885 Glycosyl transferase family, helical bundle domain BA890_09370 PF00218 Indole-3-glycerol phosphate synthase BA890_09370 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BA890_09375 PF00291 Pyridoxal-phosphate dependent enzyme BA890_09380 PF00290 Tryptophan synthase alpha chain BA890_09385 PF13545 Crp-like helix-turn-helix domain BA890_09385 PF00027 Cyclic nucleotide-binding domain BA890_09390 PF00501 AMP-binding enzyme BA890_09390 PF13193 AMP-binding enzyme C-terminal domain BA890_09395 PF00375 Sodium:dicarboxylate symporter family BA890_09405 PF00072 Response regulator receiver domain BA890_09405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_09415 PF04279 Intracellular septation protein A BA890_09420 PF03061 Thioesterase superfamily BA890_09425 PF03795 YCII-related domain BA890_09435 PF01717 Cobalamin-independent synthase, Catalytic domain BA890_09435 PF08267 Cobalamin-independent synthase, N-terminal domain BA890_09440 PF03466 LysR substrate binding domain BA890_09440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_09455 PF00990 Diguanylate cyclase, GGDEF domain BA890_09455 PF08447 PAS fold BA890_09455 PF08448 PAS fold BA890_09455 PF00563 EAL domain BA890_09460 PF04055 Radical SAM superfamily BA890_09460 PF11842 Domain of unknown function (DUF3362) BA890_09460 PF08497 Radical SAM N-terminal BA890_09465 PF00072 Response regulator receiver domain BA890_09465 PF00486 Transcriptional regulatory protein, C terminal BA890_09470 PF00512 His Kinase A (phospho-acceptor) domain BA890_09470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_09470 PF00672 HAMP domain BA890_09485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_09485 PF03466 LysR substrate binding domain BA890_09490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_09490 PF00529 HlyD membrane-fusion protein of T1SS BA890_09505 PF00085 Thioredoxin BA890_09510 PF02683 Cytochrome C biogenesis protein transmembrane region BA890_09510 PF11412 Disulphide bond corrector protein DsbC BA890_09520 PF18030 RimK PreATP-grasp domain BA890_09520 PF08443 RimK-like ATP-grasp domain BA890_09525 PF12706 Beta-lactamase superfamily domain BA890_09525 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BA890_09525 PF17770 Ribonuclease J C-terminal domain BA890_09530 PF00990 Diguanylate cyclase, GGDEF domain BA890_09530 PF00072 Response regulator receiver domain BA890_09535 PF14403 Circularly permuted ATP-grasp type 2 BA890_09550 PF04168 A predicted alpha-helical domain with a conserved ER motif. BA890_09550 PF14403 Circularly permuted ATP-grasp type 2 BA890_09555 PF01841 Transglutaminase-like superfamily BA890_09555 PF08379 Bacterial transglutaminase-like N-terminal region BA890_09560 PF00072 Response regulator receiver domain BA890_09560 PF00196 Bacterial regulatory proteins, luxR family BA890_09565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_09565 PF00512 His Kinase A (phospho-acceptor) domain BA890_09570 PF13247 4Fe-4S dicluster domain BA890_09575 PF03916 Polysulphide reductase, NrfD BA890_09580 PF00384 Molybdopterin oxidoreductase BA890_09580 PF01568 Molydopterin dinucleotide binding domain BA890_09580 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BA890_09585 PF00034 Cytochrome c BA890_09590 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BA890_09595 PF04403 Paraquat-inducible protein A BA890_09600 PF02470 MlaD protein BA890_09605 PF03886 ABC-type transport auxiliary lipoprotein component BA890_09610 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase BA890_09620 PF00535 Glycosyl transferase family 2 BA890_09625 PF01370 NAD dependent epimerase/dehydratase family BA890_09635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA890_09640 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BA890_09645 PF18073 Rubredoxin metal binding domain BA890_09650 PF06305 Lipopolysaccharide assembly protein A domain BA890_09655 PF00216 Bacterial DNA-binding protein BA890_09660 PF00575 S1 RNA binding domain BA890_09665 PF02224 Cytidylate kinase BA890_09670 PF08496 Peptidase family S49 N-terminal BA890_09670 PF01343 Peptidase family S49 BA890_09675 PF00106 short chain dehydrogenase BA890_09690 PF07733 Bacterial DNA polymerase III alpha NTPase domain BA890_09690 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BA890_09690 PF02811 PHP domain BA890_09690 PF01336 OB-fold nucleic acid binding domain BA890_09690 PF14579 Helix-hairpin-helix motif BA890_09695 PF00480 ROK family BA890_09700 PF00224 Pyruvate kinase, barrel domain BA890_09700 PF02887 Pyruvate kinase, alpha/beta domain BA890_09705 PF01734 Patatin-like phospholipase BA890_09715 PF00209 Sodium:neurotransmitter symporter family BA890_09725 PF00367 phosphotransferase system, EIIB BA890_09725 PF02378 Phosphotransferase system, EIIC BA890_09735 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BA890_09735 PF00367 phosphotransferase system, EIIB BA890_09735 PF02378 Phosphotransferase system, EIIC BA890_09740 PF01026 TatD related DNase BA890_09745 PF12169 DNA polymerase III subunits gamma and tau domain III BA890_09750 PF02223 Thymidylate kinase BA890_09755 PF02618 YceG-like family BA890_09760 PF01063 Amino-transferase class IV BA890_09765 PF02801 Beta-ketoacyl synthase, C-terminal domain BA890_09765 PF00109 Beta-ketoacyl synthase, N-terminal domain BA890_09770 PF00550 Phosphopantetheine attachment site BA890_09780 PF00698 Acyl transferase domain BA890_09785 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BA890_09785 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BA890_09790 PF02504 Fatty acid synthesis protein BA890_09795 PF01783 Ribosomal L32p protein family BA890_09800 PF02620 Large ribosomal RNA subunit accumulation protein YceD BA890_09805 PF02545 Maf-like protein BA890_09810 PF00849 RNA pseudouridylate synthase BA890_09810 PF01479 S4 domain BA890_09815 PF12111 Polyribonucleotide phosphorylase C terminal BA890_09815 PF10150 Ribonuclease E/G family BA890_09815 PF00575 S1 RNA binding domain BA890_09820 PF00916 Sulfate permease family BA890_09820 PF01740 STAS domain BA890_09825 PF01451 Low molecular weight phosphotyrosine protein phosphatase BA890_09830 PF12557 Cob(I)alamin adenosyltransferase N terminal BA890_09830 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BA890_09840 PF00485 Phosphoribulokinase / Uridine kinase family BA890_09845 PF10609 NUBPL iron-transfer P-loop NTPase BA890_09850 PF01588 Putative tRNA binding domain BA890_09850 PF09334 tRNA synthetases class I (M) BA890_09860 PF00392 Bacterial regulatory proteins, gntR family BA890_09860 PF07840 FadR C-terminal domain BA890_09865 PF06450 Bacterial Na+/H+ antiporter B (NhaB) BA890_09870 PF02600 Disulfide bond formation protein DsbB BA890_09875 PF07516 SecA Wing and Scaffold domain BA890_09875 PF07517 SecA DEAD-like domain BA890_09875 PF01043 SecA preprotein cross-linking domain BA890_09875 PF02810 SEC-C motif BA890_09880 PF01207 Dihydrouridine synthase (Dus) BA890_09885 PF00990 Diguanylate cyclase, GGDEF domain BA890_09890 PF00128 Alpha amylase, catalytic domain BA890_09890 PF02903 Alpha amylase, N-terminal ig-like domain BA890_09895 PF00005 ABC transporter BA890_09900 PF02653 Branched-chain amino acid transport system / permease component BA890_09910 PF04217 Protein of unknown function, DUF412 BA890_09915 PF00871 Acetokinase family BA890_09920 PF01515 Phosphate acetyl/butaryl transferase BA890_09920 PF07085 DRTGG domain BA890_09925 PF13194 Domain of unknown function (DUF4010) BA890_09930 PF13409 Glutathione S-transferase, N-terminal domain BA890_09935 PF00005 ABC transporter BA890_09935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA890_09940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA890_09940 PF00005 ABC transporter BA890_09945 PF00528 Binding-protein-dependent transport system inner membrane component BA890_09945 PF12911 N-terminal TM domain of oligopeptide transport permease C BA890_09950 PF00528 Binding-protein-dependent transport system inner membrane component BA890_09955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA890_09960 PF02391 MoaE protein BA890_09965 PF02597 ThiS family BA890_09970 PF01967 MoaC family BA890_09975 PF00994 Probable molybdopterin binding domain BA890_09980 PF06463 Molybdenum Cofactor Synthesis C BA890_09980 PF04055 Radical SAM superfamily BA890_09985 PF01933 Uncharacterised protein family UPF0052 BA890_09990 PF01627 Hpt domain BA890_09995 PF02954 Bacterial regulatory protein, Fis family BA890_09995 PF00072 Response regulator receiver domain BA890_09995 PF00158 Sigma-54 interaction domain BA890_10000 PF02151 UvrB/uvrC motif BA890_10000 PF04851 Type III restriction enzyme, res subunit BA890_10000 PF00271 Helicase conserved C-terminal domain BA890_10000 PF17757 UvrB interaction domain BA890_10000 PF12344 Ultra-violet resistance protein B BA890_10010 PF02508 Rnf-Nqr subunit, membrane protein BA890_10015 PF04060 Putative Fe-S cluster BA890_10020 PF10531 SLBB domain BA890_10020 PF13375 RnfC Barrel sandwich hybrid domain BA890_10020 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BA890_10020 PF12838 4Fe-4S dicluster domain BA890_10025 PF03116 NQR2, RnfD, RnfE family BA890_10030 PF04205 FMN-binding domain BA890_10035 PF02508 Rnf-Nqr subunit, membrane protein BA890_10040 PF10576 Iron-sulfur binding domain of endonuclease III BA890_10040 PF00730 HhH-GPD superfamily base excision DNA repair protein BA890_10040 PF00633 Helix-hairpin-helix motif BA890_10045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA890_10050 PF10952 Protein of unknown function (DUF2753) BA890_10055 PF18393 MotY N-terminal domain BA890_10055 PF00691 OmpA family BA890_10060 PF00929 Exonuclease BA890_10065 PF13726 Na+-H+ antiporter family BA890_10065 PF03553 Na+/H+ antiporter family BA890_10075 PF00462 Glutaredoxin BA890_10080 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BA890_10080 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BA890_10095 PF00465 Iron-containing alcohol dehydrogenase BA890_10095 PF00171 Aldehyde dehydrogenase family BA890_10100 PF01914 MarC family integral membrane protein BA890_10105 PF00027 Cyclic nucleotide-binding domain BA890_10105 PF00520 Ion transport protein BA890_10110 PF02774 Semialdehyde dehydrogenase, dimerisation domain BA890_10110 PF01118 Semialdehyde dehydrogenase, NAD binding domain BA890_10115 PF03553 Na+/H+ antiporter family BA890_10130 PF04245 37-kD nucleoid-associated bacterial protein BA890_10135 PF07208 Protein of unknown function (DUF1414) BA890_10140 PF00884 Sulfatase BA890_10140 PF11893 Domain of unknown function (DUF3413) BA890_10150 PF01497 Periplasmic binding protein BA890_10155 PF00593 TonB dependent receptor BA890_10155 PF07715 TonB-dependent Receptor Plug Domain BA890_10160 PF01032 FecCD transport family BA890_10165 PF01032 FecCD transport family BA890_10170 PF00005 ABC transporter BA890_10175 PF01037 Lrp/AsnC ligand binding domain BA890_10180 PF01053 Cys/Met metabolism PLP-dependent enzyme BA890_10185 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_10190 PF00528 Binding-protein-dependent transport system inner membrane component BA890_10195 PF00005 ABC transporter BA890_10200 PF00850 Histone deacetylase domain BA890_10205 PF00106 short chain dehydrogenase BA890_10210 PF01131 DNA topoisomerase BA890_10210 PF01751 Toprim domain BA890_10215 PF00881 Nitroreductase family BA890_10220 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_10220 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BA890_10225 PF01343 Peptidase family S49 BA890_10230 PF17763 Glutaminase/Asparaginase C-terminal domain BA890_10230 PF00710 Asparaginase, N-terminal BA890_10235 PF07023 Protein of unknown function (DUF1315) BA890_10245 PF01641 SelR domain BA890_10250 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BA890_10250 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BA890_10255 PF01263 Aldose 1-epimerase BA890_10260 PF13847 Methyltransferase domain BA890_10275 PF00245 Alkaline phosphatase BA890_10280 PF05552 Conserved TM helix BA890_10280 PF00924 Mechanosensitive ion channel BA890_10285 PF03692 Putative zinc- or iron-chelating domain BA890_10290 PF04226 Transglycosylase associated protein BA890_10295 PF03692 Putative zinc- or iron-chelating domain BA890_10300 PF00230 Major intrinsic protein BA890_10305 PF13662 Toprim domain BA890_10305 PF02132 RecR protein BA890_10310 PF02575 YbaB/EbfC DNA-binding family BA890_10315 PF12170 DNA polymerase III tau subunit V interacting with alpha BA890_10315 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BA890_10315 PF12169 DNA polymerase III subunits gamma and tau domain III BA890_10320 PF00156 Phosphoribosyl transferase domain BA890_10325 PF04304 Protein of unknown function (DUF454) BA890_10330 PF00072 Response regulator receiver domain BA890_10335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_10335 PF03466 LysR substrate binding domain BA890_10340 PF00156 Phosphoribosyl transferase domain BA890_10345 PF02674 Colicin V production protein BA890_10350 PF05036 Sporulation related domain BA890_10355 PF02875 Mur ligase family, glutamate ligase domain BA890_10355 PF08245 Mur ligase middle domain BA890_10360 PF01039 Carboxyl transferase domain BA890_10360 PF17848 Acetyl-coA carboxylase zinc finger domain BA890_10365 PF01416 tRNA pseudouridine synthase BA890_10375 PF02774 Semialdehyde dehydrogenase, dimerisation domain BA890_10375 PF01118 Semialdehyde dehydrogenase, NAD binding domain BA890_10380 PF11890 Domain of unknown function (DUF3410) BA890_10380 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BA890_10380 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BA890_10385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA890_10395 PF00455 DeoR C terminal sensor domain BA890_10395 PF08220 DeoR-like helix-turn-helix domain BA890_10410 PF00109 Beta-ketoacyl synthase, N-terminal domain BA890_10410 PF02801 Beta-ketoacyl synthase, C-terminal domain BA890_10415 PF01266 FAD dependent oxidoreductase BA890_10415 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BA890_10420 PF03358 NADPH-dependent FMN reductase BA890_10425 PF08891 YfcL protein BA890_10430 PF04315 Elongation factor P hydroxylase BA890_10435 PF03458 UPF0126 domain BA890_10440 PF01264 Chorismate synthase BA890_10445 PF05175 Methyltransferase small domain BA890_10450 PF01713 Smr domain BA890_10455 PF00300 Histidine phosphatase superfamily (branch 1) BA890_10460 PF05193 Peptidase M16 inactive domain BA890_10460 PF00675 Insulinase (Peptidase family M16) BA890_10460 PF16187 Middle or third domain of peptidase_M16 BA890_10470 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BA890_10470 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BA890_10470 PF00378 Enoyl-CoA hydratase/isomerase BA890_10475 PF02803 Thiolase, C-terminal domain BA890_10475 PF00108 Thiolase, N-terminal domain BA890_10480 PF08281 Sigma-70, region 4 BA890_10480 PF04542 Sigma-70 region 2 BA890_10490 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BA890_10495 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BA890_10500 PF04333 MlaA lipoprotein BA890_10510 PF03918 Cytochrome C biogenesis protein BA890_10515 PF08534 Redoxin BA890_10520 PF01578 Cytochrome C assembly protein BA890_10520 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BA890_10525 PF03100 CcmE BA890_10530 PF04995 Heme exporter protein D (CcmD) BA890_10535 PF01578 Cytochrome C assembly protein BA890_10540 PF03379 CcmB protein BA890_10545 PF00005 ABC transporter BA890_10555 PF01584 CheW-like domain BA890_10565 PF13614 AAA domain BA890_10570 PF01339 CheB methylesterase BA890_10570 PF00072 Response regulator receiver domain BA890_10575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_10575 PF01627 Hpt domain BA890_10575 PF02895 Signal transducing histidine kinase, homodimeric domain BA890_10575 PF01584 CheW-like domain BA890_10575 PF07194 P2 response regulator binding domain BA890_10580 PF04344 Chemotaxis phosphatase, CheZ BA890_10585 PF00072 Response regulator receiver domain BA890_10590 PF04539 Sigma-70 region 3 BA890_10590 PF04545 Sigma-70, region 4 BA890_10590 PF04542 Sigma-70 region 2 BA890_10595 PF10609 NUBPL iron-transfer P-loop NTPase BA890_10600 PF00448 SRP54-type protein, GTPase domain BA890_10605 PF00771 FHIPEP family BA890_10610 PF01312 FlhB HrpN YscU SpaS Family BA890_10615 PF01311 Bacterial export proteins, family 1 BA890_10620 PF01313 Bacterial export proteins, family 3 BA890_10625 PF00813 FliP family BA890_10630 PF04347 Flagellar biosynthesis protein, FliO BA890_10635 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BA890_10640 PF02154 Flagellar motor switch protein FliM BA890_10640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BA890_10660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BA890_10660 PF18269 T3SS EscN ATPase C-terminal domain BA890_10670 PF14841 FliG middle domain BA890_10670 PF01706 FliG C-terminal domain BA890_10670 PF14842 FliG N-terminal domain BA890_10675 PF01514 Secretory protein of YscJ/FliF family BA890_10675 PF08345 Flagellar M-ring protein C-terminal BA890_10680 PF02049 Flagellar hook-basal body complex protein FliE BA890_10685 PF00158 Sigma-54 interaction domain BA890_10685 PF00072 Response regulator receiver domain BA890_10685 PF02954 Bacterial regulatory protein, Fis family BA890_10690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_10690 PF00512 His Kinase A (phospho-acceptor) domain BA890_10695 PF00158 Sigma-54 interaction domain BA890_10695 PF01590 GAF domain BA890_10695 PF02954 Bacterial regulatory protein, Fis family BA890_10705 PF02561 Flagellar protein FliS BA890_10715 PF07195 Flagellar hook-associated protein 2 C-terminus BA890_10715 PF07196 Flagellin hook IN motif BA890_10715 PF02465 Flagellar hook-associated protein 2 N-terminus BA890_10720 PF03646 FlaG protein BA890_10725 PF00700 Bacterial flagellin C-terminal helical region BA890_10725 PF07196 Flagellin hook IN motif BA890_10725 PF00669 Bacterial flagellin N-terminal helical region BA890_10730 PF00669 Bacterial flagellin N-terminal helical region BA890_10730 PF07196 Flagellin hook IN motif BA890_10730 PF00700 Bacterial flagellin C-terminal helical region BA890_10735 PF07196 Flagellin hook IN motif BA890_10735 PF00669 Bacterial flagellin N-terminal helical region BA890_10735 PF00700 Bacterial flagellin C-terminal helical region BA890_10740 PF04261 Dyp-type peroxidase family BA890_10745 PF11143 Protein of unknown function (DUF2919) BA890_10755 PF13698 Domain of unknown function (DUF4156) BA890_10765 PF03960 ArsC family BA890_10770 PF07687 Peptidase dimerisation domain BA890_10770 PF01546 Peptidase family M20/M25/M40 BA890_10785 PF06804 NlpB/DapX lipoprotein BA890_10790 PF00701 Dihydrodipicolinate synthetase family BA890_10795 PF01842 ACT domain BA890_10800 PF00578 AhpC/TSA family BA890_10805 PF01594 AI-2E family transporter BA890_10815 PF13181 Tetratricopeptide repeat BA890_10815 PF01435 Peptidase family M48 BA890_10820 PF03960 ArsC family BA890_10825 PF03358 NADPH-dependent FMN reductase BA890_10840 PF00860 Permease family BA890_10850 PF02769 AIR synthase related protein, C-terminal domain BA890_10850 PF00586 AIR synthase related protein, N-terminal domain BA890_10855 PF00551 Formyl transferase BA890_10860 PF13230 Glutamine amidotransferases class-II BA890_10865 PF13580 SIS domain BA890_10870 PF02770 Acyl-CoA dehydrogenase, middle domain BA890_10870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BA890_10870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BA890_10870 PF09317 Domain of unknown function (DUF1974) BA890_10875 PF01740 STAS domain BA890_10875 PF00916 Sulfate permease family BA890_10885 PF00929 Exonuclease BA890_10890 PF00075 RNase H BA890_10895 PF08241 Methyltransferase domain BA890_10900 PF00753 Metallo-beta-lactamase superfamily BA890_10900 PF16123 Hydroxyacylglutathione hydrolase C-terminus BA890_10905 PF01476 LysM domain BA890_10905 PF01464 Transglycosylase SLT domain BA890_10915 PF03372 Endonuclease/Exonuclease/phosphatase family BA890_10920 PF00543 Nitrogen regulatory protein P-II BA890_10925 PF00034 Cytochrome c BA890_10930 PF11734 TilS substrate C-terminal domain BA890_10930 PF09179 TilS substrate binding domain BA890_10930 PF01171 PP-loop family BA890_10935 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BA890_10940 PF02811 PHP domain BA890_10940 PF01336 OB-fold nucleic acid binding domain BA890_10940 PF14579 Helix-hairpin-helix motif BA890_10940 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BA890_10940 PF07733 Bacterial DNA polymerase III alpha NTPase domain BA890_10945 PF01351 Ribonuclease HII BA890_10950 PF02684 Lipid-A-disaccharide synthetase BA890_10955 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BA890_10955 PF00132 Bacterial transferase hexapeptide (six repeats) BA890_10960 PF07977 FabA-like domain BA890_10965 PF00132 Bacterial transferase hexapeptide (six repeats) BA890_10965 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BA890_10970 PF03938 Outer membrane protein (OmpH-like) BA890_10975 PF07244 Surface antigen variable number repeat BA890_10975 PF01103 Surface antigen BA890_10980 PF17820 PDZ domain BA890_10980 PF02163 Peptidase family M50 BA890_10985 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BA890_10985 PF13288 DXP reductoisomerase C-terminal domain BA890_10985 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BA890_10995 PF01255 Putative undecaprenyl diphosphate synthase BA890_11000 PF01765 Ribosome recycling factor BA890_11005 PF00696 Amino acid kinase family BA890_11010 PF00889 Elongation factor TS BA890_11015 PF00318 Ribosomal protein S2 BA890_11020 PF00557 Metallopeptidase family M24 BA890_11025 PF01966 HD domain BA890_11025 PF01909 Nucleotidyltransferase domain BA890_11025 PF08335 GlnD PII-uridylyltransferase BA890_11025 PF01842 ACT domain BA890_11030 PF11944 Protein of unknown function (DUF3461) BA890_11035 PF00849 RNA pseudouridylate synthase BA890_11060 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BA890_11065 PF03806 AbgT putative transporter family BA890_11070 PF00444 Ribosomal protein L36 BA890_11075 PF01197 Ribosomal protein L31 BA890_11080 PF01980 tRNA-methyltransferase O BA890_11080 PF18389 TrmO C-terminal domain BA890_11085 PF03129 Anticodon binding domain BA890_11085 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BA890_11085 PF04073 Aminoacyl-tRNA editing domain BA890_11090 PF06786 Uncharacterised protein family (UPF0253) BA890_11100 PF00209 Sodium:neurotransmitter symporter family BA890_11110 PF01272 Transcription elongation factor, GreA/GreB, C-term BA890_11110 PF03449 Transcription elongation factor, N-terminal BA890_11115 PF00271 Helicase conserved C-terminal domain BA890_11115 PF00270 DEAD/DEAH box helicase BA890_11115 PF00570 HRDC domain BA890_11115 PF16124 RecQ zinc-binding BA890_11115 PF09382 RQC domain BA890_11120 PF11798 IMS family HHH motif BA890_11120 PF11799 impB/mucB/samB family C-terminal domain BA890_11120 PF00817 impB/mucB/samB family BA890_11130 PF04400 (Na+)-NQR maturation NqrM BA890_11135 PF02424 ApbE family BA890_11140 PF00111 2Fe-2S iron-sulfur cluster binding domain BA890_11140 PF00970 Oxidoreductase FAD-binding domain BA890_11140 PF00175 Oxidoreductase NAD-binding domain BA890_11145 PF02508 Rnf-Nqr subunit, membrane protein BA890_11150 PF02508 Rnf-Nqr subunit, membrane protein BA890_11155 PF04205 FMN-binding domain BA890_11160 PF03116 NQR2, RnfD, RnfE family BA890_11165 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) BA890_11165 PF11973 NQRA C-terminal domain BA890_11170 PF01722 BolA-like protein BA890_11175 PF05175 Methyltransferase small domain BA890_11185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BA890_11190 PF07690 Major Facilitator Superfamily BA890_11200 PF04542 Sigma-70 region 2 BA890_11200 PF04545 Sigma-70, region 4 BA890_11215 PF03502 Nucleoside-specific channel-forming protein, Tsx BA890_11220 PF02558 Ketopantoate reductase PanE/ApbA BA890_11220 PF08546 Ketopantoate reductase PanE/ApbA C terminal BA890_11225 PF01965 DJ-1/PfpI family BA890_11230 PF00266 Aminotransferase class-V BA890_11235 PF00990 Diguanylate cyclase, GGDEF domain BA890_11235 PF17151 Periplasmic sensor domain BA890_11240 PF02657 Fe-S metabolism associated domain BA890_11245 PF00899 ThiF family BA890_11250 PF03562 MltA specific insert domain BA890_11250 PF06725 3D domain BA890_11260 PF00583 Acetyltransferase (GNAT) family BA890_11260 PF00696 Amino acid kinase family BA890_11265 PF13538 UvrD-like helicase C-terminal domain BA890_11270 PF13361 UvrD-like helicase C-terminal domain BA890_11270 PF00580 UvrD/REP helicase N-terminal domain BA890_11270 PF12705 PD-(D/E)XK nuclease superfamily BA890_11275 PF17946 RecC C-terminal domain BA890_11280 PF11893 Domain of unknown function (DUF3413) BA890_11280 PF00884 Sulfatase BA890_11290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_11290 PF03466 LysR substrate binding domain BA890_11295 PF07130 YebG protein BA890_11305 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle BA890_11305 PF14602 Hexapeptide repeat of succinyl-transferase BA890_11310 PF03009 Glycerophosphoryl diester phosphodiesterase family BA890_11315 PF07690 Major Facilitator Superfamily BA890_11320 PF00230 Major intrinsic protein BA890_11325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BA890_11325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BA890_11330 PF00455 DeoR C terminal sensor domain BA890_11330 PF08220 DeoR-like helix-turn-helix domain BA890_11335 PF01266 FAD dependent oxidoreductase BA890_11335 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BA890_11340 PF01544 CorA-like Mg2+ transporter protein BA890_11360 PF00356 Bacterial regulatory proteins, lacI family BA890_11365 PF00356 Bacterial regulatory proteins, lacI family BA890_11370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_11370 PF03466 LysR substrate binding domain BA890_11400 PF04138 GtrA-like protein BA890_11405 PF00535 Glycosyl transferase family 2 BA890_11425 PF00437 Type II/IV secretion system protein BA890_11455 PF13629 Pilus formation protein N terminal region BA890_11455 PF00263 Bacterial type II and III secretion system protein BA890_11455 PF04972 BON domain BA890_11475 PF02805 Metal binding domain of Ada BA890_11475 PF12833 Helix-turn-helix domain BA890_11480 PF00501 AMP-binding enzyme BA890_11490 PF03466 LysR substrate binding domain BA890_11490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_11495 PF00009 Elongation factor Tu GTP binding domain BA890_11495 PF14492 Elongation Factor G, domain II BA890_11495 PF03144 Elongation factor Tu domain 2 BA890_11495 PF00679 Elongation factor G C-terminus BA890_11495 PF03764 Elongation factor G, domain IV BA890_11500 PF18073 Rubredoxin metal binding domain BA890_11510 PF18429 Domain of unknown function (DUF5609) BA890_11520 PF01048 Phosphorylase superfamily BA890_11525 PF01676 Metalloenzyme superfamily BA890_11530 PF02885 Glycosyl transferase family, helical bundle domain BA890_11530 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BA890_11530 PF00591 Glycosyl transferase family, a/b domain BA890_11535 PF01791 DeoC/LacD family aldolase BA890_11540 PF07662 Na+ dependent nucleoside transporter C-terminus BA890_11540 PF07670 Nucleoside recognition BA890_11540 PF01773 Na+ dependent nucleoside transporter N-terminus BA890_11545 PF01026 TatD related DNase BA890_11555 PF00009 Elongation factor Tu GTP binding domain BA890_11555 PF03144 Elongation factor Tu domain 2 BA890_11555 PF16658 Class II release factor RF3, C-terminal domain BA890_11570 PF13508 Acetyltransferase (GNAT) domain BA890_11580 PF03707 Bacterial signalling protein N terminal repeat BA890_11580 PF00990 Diguanylate cyclase, GGDEF domain BA890_11580 PF00563 EAL domain BA890_11595 PF01554 MatE BA890_11600 PF13181 Tetratricopeptide repeat BA890_11600 PF07719 Tetratricopeptide repeat BA890_11605 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BA890_11605 PF01138 3' exoribonuclease family, domain 1 BA890_11605 PF03725 3' exoribonuclease family, domain 2 BA890_11605 PF00013 KH domain BA890_11605 PF00575 S1 RNA binding domain BA890_11610 PF00312 Ribosomal protein S15 BA890_11615 PF09157 Pseudouridine synthase II TruB, C-terminal BA890_11615 PF16198 tRNA pseudouridylate synthase B C-terminal domain BA890_11615 PF01509 TruB family pseudouridylate synthase (N terminal domain) BA890_11620 PF02033 Ribosome-binding factor A BA890_11625 PF11987 Translation-initiation factor 2 BA890_11625 PF08364 Bacterial translation initiation factor IF-2 associated region BA890_11625 PF04760 Translation initiation factor IF-2, N-terminal region BA890_11625 PF00009 Elongation factor Tu GTP binding domain BA890_11630 PF08529 NusA N-terminal domain BA890_11630 PF13184 NusA-like KH domain BA890_11630 PF00575 S1 RNA binding domain BA890_11635 PF17384 RimP C-terminal SH3 domain BA890_11635 PF02576 RimP N-terminal domain BA890_11650 PF03840 Preprotein translocase SecG subunit BA890_11655 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BA890_11655 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BA890_11655 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BA890_11655 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BA890_11660 PF00809 Pterin binding enzyme BA890_11665 PF17862 AAA+ lid domain BA890_11665 PF00004 ATPase family associated with various cellular activities (AAA) BA890_11665 PF06480 FtsH Extracellular BA890_11665 PF01434 Peptidase family M41 BA890_11670 PF01728 FtsJ-like methyltransferase BA890_11675 PF01985 CRS1 / YhbY (CRM) domain BA890_11680 PF03449 Transcription elongation factor, N-terminal BA890_11680 PF01272 Transcription elongation factor, GreA/GreB, C-term BA890_11685 PF13609 Gram-negative porin BA890_11690 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BA890_11700 PF00579 tRNA synthetases class I (W and Y) BA890_11705 PF01551 Peptidase family M23 BA890_11705 PF08525 Opacity-associated protein A N-terminal motif BA890_11705 PF01476 LysM domain BA890_11710 PF00873 AcrB/AcrD/AcrF family BA890_11715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_11720 PF01521 Iron-sulphur cluster biosynthesis BA890_11725 PF00202 Aminotransferase class-III BA890_11730 PF01594 AI-2E family transporter BA890_11735 PF05175 Methyltransferase small domain BA890_11735 PF08468 Methyltransferase small domain N-terminal BA890_11740 PF00072 Response regulator receiver domain BA890_11740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_11740 PF00512 His Kinase A (phospho-acceptor) domain BA890_11740 PF09308 LuxQ, periplasmic BA890_11745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA890_11750 PF00528 Binding-protein-dependent transport system inner membrane component BA890_11755 PF00528 Binding-protein-dependent transport system inner membrane component BA890_11755 PF12911 N-terminal TM domain of oligopeptide transport permease C BA890_11760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA890_11760 PF00005 ABC transporter BA890_11765 PF00005 ABC transporter BA890_11765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA890_11775 PF01869 BadF/BadG/BcrA/BcrD ATPase family BA890_11780 PF02838 Glycosyl hydrolase family 20, domain 2 BA890_11780 PF00728 Glycosyl hydrolase family 20, catalytic domain BA890_11785 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BA890_11785 PF06165 Glycosyltransferase family 36 BA890_11790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BA890_11790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BA890_11790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BA890_11790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BA890_11795 PF00005 ABC transporter BA890_11795 PF08402 TOBE domain BA890_11805 PF13416 Bacterial extracellular solute-binding protein BA890_11810 PF00909 Ammonium Transporter Family BA890_11815 PF00543 Nitrogen regulatory protein P-II BA890_11820 PF06062 Uncharacterised protein family (UPF0231) BA890_11825 PF13556 PucR C-terminal helix-turn-helix domain BA890_11825 PF05651 Putative sugar diacid recognition BA890_11825 PF17853 GGDEF-like domain BA890_11830 PF02447 GntP family permease BA890_11835 PF02595 Glycerate kinase family BA890_11840 PF11791 Aconitate B N-terminal domain BA890_11840 PF00330 Aconitase family (aconitate hydratase) BA890_11840 PF06434 Aconitate hydratase 2 N-terminus BA890_11845 PF01734 Patatin-like phospholipase BA890_11850 PF00912 Transglycosylase BA890_11850 PF00905 Penicillin binding protein transpeptidase domain BA890_11850 PF14814 Bifunctional transglycosylase second domain BA890_11855 PF00271 Helicase conserved C-terminal domain BA890_11855 PF04408 Helicase associated domain (HA2) BA890_11855 PF08482 ATP-dependent helicase C-terminal BA890_11855 PF00270 DEAD/DEAH box helicase BA890_11860 PF17746 SfsA N-terminal OB domain BA890_11860 PF03749 Sugar fermentation stimulation protein RE domain BA890_11865 PF01258 Prokaryotic dksA/traR C4-type zinc finger BA890_11870 PF00749 tRNA synthetases class I (E and Q), catalytic domain BA890_11875 PF12627 Probable RNA and SrmB- binding site of polymerase A BA890_11875 PF12626 Polymerase A arginine-rich C-terminus BA890_11875 PF01743 Poly A polymerase head domain BA890_11880 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BA890_11885 PF02548 Ketopantoate hydroxymethyltransferase BA890_11890 PF02569 Pantoate-beta-alanine ligase BA890_11895 PF01061 ABC-2 type transporter BA890_11900 PF00005 ABC transporter BA890_11905 PF00916 Sulfate permease family BA890_11905 PF01740 STAS domain BA890_11910 PF00484 Carbonic anhydrase BA890_11915 PF00156 Phosphoribosyl transferase domain BA890_11920 PF00440 Bacterial regulatory proteins, tetR family BA890_11925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BA890_11925 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_11930 PF00364 Biotin-requiring enzyme BA890_11930 PF02817 e3 binding domain BA890_11930 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BA890_11935 PF17831 Pyruvate dehydrogenase E1 component middle domain BA890_11935 PF00456 Transketolase, thiamine diphosphate binding domain BA890_11940 PF07729 FCD domain BA890_11940 PF00392 Bacterial regulatory proteins, gntR family BA890_11945 PF01510 N-acetylmuramoyl-L-alanine amidase BA890_11950 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BA890_11950 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BA890_11955 PF07963 Prokaryotic N-terminal methylation motif BA890_11955 PF00114 Pilin (bacterial filament) BA890_11960 PF00437 Type II/IV secretion system protein BA890_11960 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BA890_11965 PF00482 Type II secretion system (T2SS), protein F BA890_11970 PF06750 Bacterial Peptidase A24 N-terminal domain BA890_11970 PF01478 Type IV leader peptidase family BA890_11975 PF01121 Dephospho-CoA kinase BA890_11980 PF07072 Cell division protein BA890_11985 PF03884 DNA gyrase inhibitor YacG BA890_11990 PF01245 Ribosomal protein L19 BA890_11995 PF01746 tRNA (Guanine-1)-methyltransferase BA890_12000 PF01782 RimM N-terminal domain BA890_12000 PF05239 PRC-barrel domain BA890_12005 PF00886 Ribosomal protein S16 BA890_12010 PF02978 Signal peptide binding domain BA890_12010 PF02881 SRP54-type protein, helical bundle domain BA890_12010 PF00448 SRP54-type protein, GTPase domain BA890_12015 PF01578 Cytochrome C assembly protein BA890_12020 PF01595 Cyclin M transmembrane N-terminal domain BA890_12020 PF00571 CBS domain BA890_12020 PF03471 Transporter associated domain BA890_12025 PF02664 S-Ribosylhomocysteinase (LuxS) BA890_12035 PF04262 Glutamate-cysteine ligase BA890_12040 PF00675 Insulinase (Peptidase family M16) BA890_12040 PF05193 Peptidase M16 inactive domain BA890_12045 PF09335 SNARE associated Golgi protein BA890_12050 PF08240 Alcohol dehydrogenase GroES-like domain BA890_12050 PF00107 Zinc-binding dehydrogenase BA890_12055 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit BA890_12060 PF02436 Conserved carboxylase domain BA890_12060 PF00364 Biotin-requiring enzyme BA890_12060 PF00682 HMGL-like BA890_12065 PF04277 Oxaloacetate decarboxylase, gamma chain BA890_12120 PF02599 Global regulator protein family BA890_12125 PF00696 Amino acid kinase family BA890_12125 PF01842 ACT domain BA890_12125 PF13840 ACT domain BA890_12130 PF02272 DHHA1 domain BA890_12130 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BA890_12130 PF01411 tRNA synthetases class II (A) BA890_12135 PF02631 RecX family BA890_12140 PF00154 recA bacterial DNA recombination protein BA890_12145 PF02464 Competence-damaged protein BA890_12150 PF05190 MutS family domain IV BA890_12150 PF05188 MutS domain II BA890_12150 PF00488 MutS domain V BA890_12150 PF01624 MutS domain I BA890_12150 PF05192 MutS domain III BA890_12155 PF04545 Sigma-70, region 4 BA890_12155 PF04542 Sigma-70 region 2 BA890_12155 PF00140 Sigma-70 factor, region 1.2 BA890_12155 PF04539 Sigma-70 region 3 BA890_12160 PF01551 Peptidase family M23 BA890_12160 PF01476 LysM domain BA890_12170 PF01975 Survival protein SurE BA890_12175 PF01142 tRNA pseudouridine synthase D (TruD) BA890_12180 PF02542 YgbB family BA890_12185 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BA890_12190 PF04977 Septum formation initiator BA890_12195 PF00113 Enolase, C-terminal TIM barrel domain BA890_12195 PF03952 Enolase, N-terminal domain BA890_12200 PF06418 CTP synthase N-terminus BA890_12200 PF00117 Glutamine amidotransferase class-I BA890_12210 PF03819 MazG nucleotide pyrophosphohydrolase domain BA890_12215 PF04607 Region found in RelA / SpoT proteins BA890_12215 PF02824 TGS domain BA890_12215 PF13291 ACT domain BA890_12220 PF05958 tRNA (Uracil-5-)-methyltransferase BA890_12220 PF01938 TRAM domain BA890_12225 PF00512 His Kinase A (phospho-acceptor) domain BA890_12225 PF00072 Response regulator receiver domain BA890_12225 PF01627 Hpt domain BA890_12225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_12225 PF00672 HAMP domain BA890_12225 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BA890_12230 PF01648 4'-phosphopantetheinyl transferase superfamily BA890_12235 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BA890_12240 PF02565 Recombination protein O C terminal BA890_12240 PF11967 Recombination protein O N terminal BA890_12245 PF01926 50S ribosome-binding GTPase BA890_12245 PF07650 KH domain BA890_12250 PF00035 Double-stranded RNA binding motif BA890_12250 PF14622 Ribonuclease-III-like BA890_12255 PF10502 Signal peptidase, peptidase S26 BA890_12260 PF06421 GTP-binding protein LepA C-terminus BA890_12260 PF03144 Elongation factor Tu domain 2 BA890_12260 PF00679 Elongation factor G C-terminus BA890_12260 PF00009 Elongation factor Tu GTP binding domain BA890_12270 PF17188 MucB/RseB C-terminal domain BA890_12270 PF03888 MucB/RseB N-terminal domain BA890_12275 PF03873 Anti sigma-E protein RseA, C-terminal domain BA890_12275 PF03872 Anti sigma-E protein RseA, N-terminal domain BA890_12280 PF04542 Sigma-70 region 2 BA890_12280 PF08281 Sigma-70, region 4 BA890_12285 PF00890 FAD binding domain BA890_12285 PF02910 Fumarate reductase flavoprotein C-term BA890_12295 PF03937 Flavinator of succinate dehydrogenase BA890_12300 PF01571 Aminomethyltransferase folate-binding domain BA890_12315 PF01494 FAD binding domain BA890_12320 PF01494 FAD binding domain BA890_12325 PF03695 Uncharacterised protein family (UPF0149) BA890_12330 PF05164 Cell division protein ZapA BA890_12340 PF01812 5-formyltetrahydrofolate cyclo-ligase family BA890_12345 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BA890_12350 PF01842 ACT domain BA890_12350 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BA890_12350 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BA890_12355 PF04402 Protein of unknown function (DUF541) BA890_12360 PF03466 LysR substrate binding domain BA890_12360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_12365 PF01810 LysE type translocator BA890_12370 PF05552 Conserved TM helix BA890_12370 PF00924 Mechanosensitive ion channel BA890_12375 PF01116 Fructose-bisphosphate aldolase class-II BA890_12380 PF00162 Phosphoglycerate kinase BA890_12385 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BA890_12385 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BA890_12390 PF00456 Transketolase, thiamine diphosphate binding domain BA890_12390 PF02780 Transketolase, C-terminal domain BA890_12390 PF02779 Transketolase, pyrimidine binding domain BA890_12400 PF00438 S-adenosylmethionine synthetase, N-terminal domain BA890_12400 PF02772 S-adenosylmethionine synthetase, central domain BA890_12400 PF02773 S-adenosylmethionine synthetase, C-terminal domain BA890_12410 PF17283 SprT-like zinc ribbon domain BA890_12410 PF10263 SprT-like family BA890_12415 PF04231 Endonuclease I BA890_12420 PF04452 RNA methyltransferase BA890_12425 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BA890_12425 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BA890_12430 PF02622 Uncharacterized ACR, COG1678 BA890_12435 PF03652 Holliday junction resolvase BA890_12440 PF00437 Type II/IV secretion system protein BA890_12445 PF00437 Type II/IV secretion system protein BA890_12450 PF01168 Alanine racemase, N-terminal domain BA890_12455 PF03807 NADP oxidoreductase coenzyme F420-dependent BA890_12455 PF14748 Pyrroline-5-carboxylate reductase dimerisation BA890_12460 PF02325 YGGT family BA890_12465 PF02594 Uncharacterised ACR, YggU family COG1872 BA890_12475 PF01725 Ham1 family BA890_12480 PF06969 HemN C-terminal domain BA890_12480 PF04055 Radical SAM superfamily BA890_12485 PF04960 Glutaminase BA890_12490 PF02086 D12 class N6 adenine-specific DNA methyltransferase BA890_12495 PF02390 Putative methyltransferase BA890_12500 PF14815 NUDIX domain BA890_12500 PF00633 Helix-hairpin-helix motif BA890_12500 PF00730 HhH-GPD superfamily base excision DNA repair protein BA890_12505 PF04362 Bacterial Fe(2+) trafficking BA890_12510 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BA890_12510 PF01464 Transglycosylase SLT domain BA890_12550 PF17200 Single Cache domain 2 BA890_12550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA890_12550 PF00672 HAMP domain BA890_12625 PF00106 short chain dehydrogenase BA890_12630 PF01758 Sodium Bile acid symporter family BA890_12640 PF00106 short chain dehydrogenase BA890_12645 PF10011 Predicted membrane protein (DUF2254) BA890_12655 PF03739 Lipopolysaccharide export system permease LptF/LptG BA890_12660 PF03739 Lipopolysaccharide export system permease LptF/LptG BA890_12665 PF02789 Cytosol aminopeptidase family, N-terminal domain BA890_12665 PF00883 Cytosol aminopeptidase family, catalytic domain BA890_12670 PF04364 DNA polymerase III chi subunit, HolC BA890_12675 PF10458 Valyl tRNA synthetase tRNA binding arm BA890_12675 PF08264 Anticodon-binding domain of tRNA BA890_12675 PF00133 tRNA synthetases class I (I, L, M and V) BA890_12685 PF00583 Acetyltransferase (GNAT) family BA890_12695 PF06877 Regulator of ribonuclease activity B BA890_12705 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BA890_12705 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BA890_12710 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BA890_12710 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BA890_12715 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BA890_12715 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BA890_12720 PF01042 Endoribonuclease L-PSP BA890_12725 PF01553 Acyltransferase BA890_12730 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BA890_12735 PF01722 BolA-like protein BA890_12745 PF05494 MlaC protein BA890_12750 PF02470 MlaD protein BA890_12755 PF02405 Permease MlaE BA890_12760 PF00005 ABC transporter BA890_12765 PF01699 Sodium/calcium exchanger protein BA890_12770 PF00571 CBS domain BA890_12770 PF01380 SIS domain BA890_12780 PF03968 OstA-like protein BA890_12785 PF12399 Branched-chain amino acid ATP-binding cassette transporter BA890_12785 PF00005 ABC transporter BA890_12790 PF04963 Sigma-54 factor, core binding domain BA890_12790 PF04552 Sigma-54, DNA binding domain BA890_12790 PF00309 Sigma-54 factor, Activator interacting domain (AID) BA890_12795 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BA890_12800 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BA890_12805 PF03668 P-loop ATPase protein family BA890_12810 PF00381 PTS HPr component phosphorylation site BA890_12815 PF03448 MgtE intracellular N domain BA890_12815 PF01769 Divalent cation transporter BA890_12815 PF00571 CBS domain BA890_12820 PF01523 Putative modulator of DNA gyrase BA890_12825 PF04751 Protein of unknown function (DUF615) BA890_12830 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BA890_12830 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BA890_12835 PF00849 RNA pseudouridylate synthase BA890_12845 PF00176 SNF2 family N-terminal domain BA890_12845 PF12137 RNA polymerase recycling family C-terminal BA890_12845 PF18337 RapA N-terminal Tudor like domain BA890_12845 PF00271 Helicase conserved C-terminal domain BA890_12845 PF18339 RapA N-terminal Tudor like domain 1 BA890_12850 PF02562 PhoH-like protein BA890_12850 PF13638 PIN domain BA890_12855 PF01523 Putative modulator of DNA gyrase BA890_12860 PF00795 Carbon-nitrogen hydrolase BA890_12865 PF13502 AsmA-like C-terminal region BA890_12865 PF13116 Protein of unknown function BA890_12870 PF00575 S1 RNA binding domain BA890_12870 PF10150 Ribonuclease E/G family BA890_12875 PF02545 Maf-like protein BA890_12880 PF04093 rod shape-determining protein MreD BA890_12885 PF04085 rod shape-determining protein MreC BA890_12925 PF07963 Prokaryotic N-terminal methylation motif BA890_12925 PF08334 Type II secretion system (T2SS), protein G BA890_12935 PF00482 Type II secretion system (T2SS), protein F BA890_12940 PF00437 Type II/IV secretion system protein BA890_12940 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BA890_12950 PF01471 Putative peptidoglycan binding domain BA890_12950 PF13401 AAA domain BA890_12955 PF03958 Bacterial type II/III secretion system short domain BA890_12955 PF11741 AMIN domain BA890_12955 PF07660 Secretin and TonB N terminus short domain BA890_12955 PF00263 Bacterial type II and III secretion system protein BA890_12975 PF00563 EAL domain BA890_12975 PF17157 Gammaproteobacterial periplasmic sensor domain BA890_12975 PF00990 Diguanylate cyclase, GGDEF domain BA890_12980 PF00436 Single-strand binding protein family BA890_12985 PF00196 Bacterial regulatory proteins, luxR family BA890_12990 PF00483 Nucleotidyl transferase BA890_12995 PF17760 UvrA interaction domain BA890_12995 PF00005 ABC transporter BA890_12995 PF17755 UvrA DNA-binding domain BA890_13005 PF00266 Aminotransferase class-V BA890_13010 PF01842 ACT domain BA890_13010 PF00696 Amino acid kinase family BA890_13015 PF00809 Pterin binding enzyme BA890_13015 PF02965 Vitamin B12 dependent methionine synthase, activation domain BA890_13015 PF02310 B12 binding domain BA890_13015 PF02574 Homocysteine S-methyltransferase BA890_13015 PF02607 B12 binding domain BA890_13020 PF00999 Sodium/hydrogen exchanger family BA890_13080 PF01507 Phosphoadenosine phosphosulfate reductase family BA890_13085 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BA890_13085 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BA890_13090 PF00175 Oxidoreductase NAD-binding domain BA890_13090 PF00258 Flavodoxin BA890_13090 PF00667 FAD binding domain BA890_13110 PF01207 Dihydrouridine synthase (Dus) BA890_13115 PF01475 Ferric uptake regulator family BA890_13125 PF00342 Phosphoglucose isomerase BA890_13130 PF01894 Uncharacterised protein family UPF0047 BA890_13135 PF00842 Alanine racemase, C-terminal domain BA890_13135 PF01168 Alanine racemase, N-terminal domain BA890_13140 PF03796 DnaB-like helicase C terminal domain BA890_13140 PF00772 DnaB-like helicase N terminal domain BA890_13150 PF03948 Ribosomal protein L9, C-terminal domain BA890_13150 PF01281 Ribosomal protein L9, N-terminal domain BA890_13155 PF01084 Ribosomal protein S18 BA890_13160 PF00436 Single-strand binding protein family BA890_13165 PF01250 Ribosomal protein S6 BA890_13170 PF00834 Ribulose-phosphate 3 epimerase family BA890_13175 PF02086 D12 class N6 adenine-specific DNA methyltransferase BA890_13185 PF01761 3-dehydroquinate synthase BA890_13190 PF01202 Shikimate kinase BA890_13195 PF07660 Secretin and TonB N terminus short domain BA890_13195 PF00263 Bacterial type II and III secretion system protein BA890_13195 PF11741 AMIN domain BA890_13195 PF03958 Bacterial type II/III secretion system short domain BA890_13220 PF17092 Penicillin-binding protein OB-like domain BA890_13220 PF00912 Transglycosylase BA890_13220 PF00905 Penicillin binding protein transpeptidase domain BA890_13225 PF03466 LysR substrate binding domain BA890_13225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_13230 PF00462 Glutaredoxin BA890_13230 PF08534 Redoxin BA890_13235 PF00583 Acetyltransferase (GNAT) family BA890_13235 PF14698 Argininosuccinate lyase C-terminal BA890_13235 PF00206 Lyase BA890_13240 PF00764 Arginosuccinate synthase BA890_13245 PF00696 Amino acid kinase family BA890_13250 PF01118 Semialdehyde dehydrogenase, NAD binding domain BA890_13250 PF02774 Semialdehyde dehydrogenase, dimerisation domain BA890_13255 PF01546 Peptidase family M20/M25/M40 BA890_13255 PF07687 Peptidase dimerisation domain BA890_13260 PF00311 Phosphoenolpyruvate carboxylase BA890_13270 PF02219 Methylenetetrahydrofolate reductase BA890_13275 PF00742 Homoserine dehydrogenase BA890_13275 PF03447 Homoserine dehydrogenase, NAD binding domain BA890_13275 PF00696 Amino acid kinase family BA890_13280 PF01053 Cys/Met metabolism PLP-dependent enzyme BA890_13285 PF01340 Met Apo-repressor, MetJ BA890_13290 PF00390 Malic enzyme, N-terminal domain BA890_13290 PF03949 Malic enzyme, NAD binding domain BA890_13295 PF00210 Ferritin-like domain BA890_13300 PF03143 Elongation factor Tu C-terminal domain BA890_13300 PF03144 Elongation factor Tu domain 2 BA890_13300 PF00009 Elongation factor Tu GTP binding domain BA890_13305 PF03144 Elongation factor Tu domain 2 BA890_13305 PF00679 Elongation factor G C-terminus BA890_13305 PF03764 Elongation factor G, domain IV BA890_13305 PF00009 Elongation factor Tu GTP binding domain BA890_13305 PF14492 Elongation Factor G, domain II BA890_13310 PF00177 Ribosomal protein S7p/S5e BA890_13315 PF00164 Ribosomal protein S12/S23 BA890_13320 PF04077 DsrH like protein BA890_13325 PF02635 DsrE/DsrF-like family BA890_13330 PF02635 DsrE/DsrF-like family BA890_13335 PF13309 HTH domain BA890_13335 PF08348 YheO-like PAS domain BA890_13340 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BA890_13340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BA890_13350 PF04102 SlyX BA890_13355 PF01112 Asparaginase BA890_13360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BA890_13370 PF00999 Sodium/hydrogen exchanger family BA890_13370 PF02254 TrkA-N domain BA890_13375 PF02525 Flavodoxin-like fold BA890_13380 PF00005 ABC transporter BA890_13380 PF12848 ABC transporter BA890_13390 PF00561 alpha/beta hydrolase fold BA890_13395 PF06794 Uncharacterised protein family (UPF0270) BA890_13400 PF00485 Phosphoribulokinase / Uridine kinase family BA890_13405 PF13545 Crp-like helix-turn-helix domain BA890_13405 PF00027 Cyclic nucleotide-binding domain BA890_13415 PF00171 Aldehyde dehydrogenase family BA890_13420 PF04958 Arginine N-succinyltransferase beta subunit BA890_13425 PF00202 Aminotransferase class-III BA890_13430 PF00117 Glutamine amidotransferase class-I BA890_13435 PF00579 tRNA synthetases class I (W and Y) BA890_13440 PF13419 Haloacid dehalogenase-like hydrolase BA890_13445 PF00588 SpoU rRNA Methylase family BA890_13445 PF08032 RNA 2'-O ribose methyltransferase substrate binding BA890_13450 PF17876 Cold shock domain BA890_13450 PF08206 Ribonuclease B OB domain BA890_13450 PF00773 RNB domain BA890_13450 PF00575 S1 RNA binding domain BA890_13450 PF08461 Ribonuclease R winged-helix domain BA890_13455 PF02082 Transcriptional regulator BA890_13460 PF00175 Oxidoreductase NAD-binding domain BA890_13460 PF00042 Globin BA890_13460 PF00970 Oxidoreductase FAD-binding domain BA890_13465 PF08238 Sel1 repeat BA890_13470 PF00709 Adenylosuccinate synthetase BA890_13475 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) BA890_13480 PF01145 SPFH domain / Band 7 family BA890_13485 PF12221 Bacterial membrane protein N terminal BA890_13485 PF01145 SPFH domain / Band 7 family BA890_13490 PF16360 GTP-binding GTPase Middle Region BA890_13490 PF13167 GTP-binding GTPase N-terminal BA890_13490 PF01926 50S ribosome-binding GTPase BA890_13495 PF17209 Hfq protein BA890_13505 PF01119 DNA mismatch repair protein, C-terminal domain BA890_13505 PF08676 MutL C terminal dimerisation domain BA890_13510 PF01520 N-acetylmuramoyl-L-alanine amidase BA890_13515 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BA890_13520 PF08331 Domain of unknown function (DUF1730) BA890_13585 PF00929 Exonuclease BA890_13590 PF03193 RsgA GTPase BA890_13595 PF02666 Phosphatidylserine decarboxylase BA890_13600 PF00939 Sodium:sulfate symporter transmembrane region BA890_13610 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BA890_13610 PF01676 Metalloenzyme superfamily BA890_13615 PF00581 Rhodanese-like domain BA890_13620 PF02556 Preprotein translocase subunit SecB BA890_13625 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BA890_13625 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BA890_13630 PF00132 Bacterial transferase hexapeptide (six repeats) BA890_13630 PF06426 Serine acetyltransferase, N-terminal BA890_13635 PF01551 Peptidase family M23 BA890_13645 PF08360 QacR-like protein, C-terminal region BA890_13645 PF00440 Bacterial regulatory proteins, tetR family BA890_13655 PF00152 tRNA synthetases class II (D, K and N) BA890_13660 PF00890 FAD binding domain BA890_13660 PF02910 Fumarate reductase flavoprotein C-term BA890_13665 PF13183 4Fe-4S dicluster domain BA890_13665 PF13085 2Fe-2S iron-sulfur cluster binding domain BA890_13670 PF02300 Fumarate reductase subunit C BA890_13675 PF02313 Fumarate reductase subunit D BA890_13685 PF08207 Elongation factor P (EF-P) KOW-like domain BA890_13685 PF01132 Elongation factor P (EF-P) OB domain BA890_13685 PF09285 Elongation factor P, C-terminal BA890_13690 PF04055 Radical SAM superfamily BA890_13695 PF02308 MgtC family BA890_13710 PF02796 Helix-turn-helix domain of resolvase BA890_13710 PF00239 Resolvase, N terminal domain BA890_13720 PF00118 TCP-1/cpn60 chaperonin family BA890_13725 PF00166 Chaperonin 10 Kd subunit BA890_13730 PF01554 MatE BA890_13735 PF00365 Phosphofructokinase BA890_13740 PF01545 Cation efflux family BA890_13740 PF16916 Dimerisation domain of Zinc Transporter BA890_13745 PF07813 LTXXQ motif family protein BA890_13750 PF00072 Response regulator receiver domain BA890_13750 PF00486 Transcriptional regulatory protein, C terminal BA890_13755 PF00512 His Kinase A (phospho-acceptor) domain BA890_13755 PF00672 HAMP domain BA890_13755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_13755 PF16527 Two-component sensor protein CpxA, periplasmic domain BA890_13760 PF00588 SpoU rRNA Methylase family BA890_13765 PF04186 FxsA cytoplasmic membrane protein BA890_13770 PF00206 Lyase BA890_13770 PF10415 Fumarase C C-terminus BA890_13775 PF03605 Anaerobic c4-dicarboxylate membrane transporter BA890_13780 PF02683 Cytochrome C biogenesis protein transmembrane region BA890_13780 PF11412 Disulphide bond corrector protein DsbC BA890_13785 PF00072 Response regulator receiver domain BA890_13785 PF00196 Bacterial regulatory proteins, luxR family BA890_13790 PF03471 Transporter associated domain BA890_13790 PF02080 TrkA-C domain BA890_13790 PF00999 Sodium/hydrogen exchanger family BA890_13800 PF00474 Sodium:solute symporter family BA890_13810 PF00206 Lyase BA890_13810 PF10415 Fumarase C C-terminus BA890_13815 PF00672 HAMP domain BA890_13815 PF00512 His Kinase A (phospho-acceptor) domain BA890_13815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_13815 PF00072 Response regulator receiver domain BA890_13815 PF01627 Hpt domain BA890_13820 PF12832 MFS_1 like family BA890_13835 PF00501 AMP-binding enzyme BA890_13835 PF13193 AMP-binding enzyme C-terminal domain BA890_13835 PF16177 Acetyl-coenzyme A synthetase N-terminus BA890_13840 PF01220 Dehydroquinase class II BA890_13845 PF00364 Biotin-requiring enzyme BA890_13850 PF02785 Biotin carboxylase C-terminal domain BA890_13850 PF00289 Biotin carboxylase, N-terminal domain BA890_13850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BA890_13860 PF01207 Dihydrouridine synthase (Dus) BA890_13865 PF02954 Bacterial regulatory protein, Fis family BA890_13895 PF13358 DDE superfamily endonuclease BA890_13950 PF13411 MerR HTH family regulatory protein BA890_13960 PF02142 MGS-like domain BA890_13960 PF01808 AICARFT/IMPCHase bienzyme BA890_13965 PF02844 Phosphoribosylglycinamide synthetase, N domain BA890_13965 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BA890_13965 PF02843 Phosphoribosylglycinamide synthetase, C domain BA890_13975 PF00216 Bacterial DNA-binding protein BA890_13980 PF01595 Cyclin M transmembrane N-terminal domain BA890_13980 PF00571 CBS domain BA890_13985 PF04222 Protein of unknown function (DUF416) BA890_13990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BA890_13995 PF03167 Uracil DNA glycosylase superfamily BA890_14000 PF01208 Uroporphyrinogen decarboxylase (URO-D) BA890_14005 PF00293 NUDIX domain BA890_14005 PF09297 NADH pyrophosphatase zinc ribbon domain BA890_14010 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ BA890_14015 PF04998 RNA polymerase Rpb1, domain 5 BA890_14015 PF00623 RNA polymerase Rpb1, domain 2 BA890_14015 PF04997 RNA polymerase Rpb1, domain 1 BA890_14015 PF05000 RNA polymerase Rpb1, domain 4 BA890_14015 PF04983 RNA polymerase Rpb1, domain 3 BA890_14020 PF04565 RNA polymerase Rpb2, domain 3 BA890_14020 PF04561 RNA polymerase Rpb2, domain 2 BA890_14020 PF10385 RNA polymerase beta subunit external 1 domain BA890_14020 PF00562 RNA polymerase Rpb2, domain 6 BA890_14020 PF04560 RNA polymerase Rpb2, domain 7 BA890_14020 PF04563 RNA polymerase beta subunit BA890_14025 PF16320 Ribosomal protein L7/L12 dimerisation domain BA890_14025 PF00542 Ribosomal protein L7/L12 C-terminal domain BA890_14030 PF00466 Ribosomal protein L10 BA890_14035 PF00687 Ribosomal protein L1p/L10e family BA890_14040 PF03946 Ribosomal protein L11, N-terminal domain BA890_14040 PF00298 Ribosomal protein L11, RNA binding domain BA890_14045 PF02357 Transcription termination factor nusG BA890_14045 PF00467 KOW motif BA890_14050 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BA890_14055 PF03144 Elongation factor Tu domain 2 BA890_14055 PF03143 Elongation factor Tu C-terminal domain BA890_14055 PF00009 Elongation factor Tu GTP binding domain BA890_14080 PF00485 Phosphoribulokinase / Uridine kinase family BA890_14085 PF03099 Biotin/lipoate A/B protein ligase family BA890_14085 PF02237 Biotin protein ligase C terminal domain BA890_14085 PF08279 HTH domain BA890_14090 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BA890_14090 PF01565 FAD binding domain BA890_14100 PF13091 PLD-like domain BA890_14165 PF01177 Asp/Glu/Hydantoin racemase BA890_14175 PF07715 TonB-dependent Receptor Plug Domain BA890_14175 PF00593 TonB dependent receptor BA890_14180 PF05958 tRNA (Uracil-5-)-methyltransferase BA890_14190 PF00440 Bacterial regulatory proteins, tetR family BA890_14195 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_14195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BA890_14200 PF01554 MatE BA890_14205 PF04072 Leucine carboxyl methyltransferase BA890_14210 PF01726 LexA DNA binding domain BA890_14210 PF00717 Peptidase S24-like BA890_14215 PF01553 Acyltransferase BA890_14220 PF01040 UbiA prenyltransferase family BA890_14225 PF04345 Chorismate lyase BA890_14230 PF03748 Flagellar basal body-associated protein FliL BA890_14235 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease BA890_14235 PF01694 Rhomboid family BA890_14240 PF00581 Rhodanese-like domain BA890_14245 PF00140 Sigma-70 factor, region 1.2 BA890_14245 PF04542 Sigma-70 region 2 BA890_14245 PF04545 Sigma-70, region 4 BA890_14250 PF18075 FtsX extracellular domain BA890_14255 PF00005 ABC transporter BA890_14260 PF00448 SRP54-type protein, GTPase domain BA890_14260 PF02881 SRP54-type protein, helical bundle domain BA890_14310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BA890_14310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BA890_14315 PF01022 Bacterial regulatory protein, arsR family BA890_14320 PF08668 HDOD domain BA890_14320 PF00563 EAL domain BA890_14325 PF01810 LysE type translocator BA890_14330 PF12146 Serine aminopeptidase, S33 BA890_14355 PF13419 Haloacid dehalogenase-like hydrolase BA890_14360 PF02899 Phage integrase, N-terminal SAM-like domain BA890_14360 PF00589 Phage integrase family BA890_14370 PF01678 Diaminopimelate epimerase BA890_14375 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BA890_14375 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BA890_14380 PF01491 Frataxin-like domain BA890_14385 PF01295 Adenylate cyclase, class-I BA890_14385 PF12633 Adenylate cyclase NT domain BA890_14390 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BA890_14390 PF03900 Porphobilinogen deaminase, C-terminal domain BA890_14395 PF02602 Uroporphyrinogen-III synthase HemD BA890_14400 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase BA890_14405 PF07219 HemY protein N-terminus BA890_14450 PF00175 Oxidoreductase NAD-binding domain BA890_14460 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BA890_14470 PF07497 Rho termination factor, RNA-binding domain BA890_14470 PF07498 Rho termination factor, N-terminal domain BA890_14470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BA890_14475 PF00085 Thioredoxin BA890_14480 PF00271 Helicase conserved C-terminal domain BA890_14480 PF00270 DEAD/DEAH box helicase BA890_14485 PF02541 Ppx/GppA phosphatase family BA890_14490 PF02592 Putative vitamin uptake transporter BA890_14500 PF00271 Helicase conserved C-terminal domain BA890_14500 PF00570 HRDC domain BA890_14500 PF16124 RecQ zinc-binding BA890_14500 PF00270 DEAD/DEAH box helicase BA890_14500 PF09382 RQC domain BA890_14505 PF00892 EamA-like transporter family BA890_14515 PF01810 LysE type translocator BA890_14525 PF00580 UvrD/REP helicase N-terminal domain BA890_14525 PF13361 UvrD-like helicase C-terminal domain BA890_14535 PF05114 Protein of unknown function (DUF692) BA890_14555 PF07690 Major Facilitator Superfamily BA890_14560 PF03466 LysR substrate binding domain BA890_14560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_14565 PF00557 Metallopeptidase family M24 BA890_14565 PF01321 Creatinase/Prolidase N-terminal domain BA890_14565 PF01321 Creatinase/Prolidase N-terminal domain BA890_14565 PF00557 Metallopeptidase family M24 BA890_14570 PF04055 Radical SAM superfamily BA890_14570 PF06968 Biotin and Thiamin Synthesis associated domain BA890_14575 PF05690 Thiazole biosynthesis protein ThiG BA890_14580 PF02597 ThiS family BA890_14585 PF00899 ThiF family BA890_14590 PF02581 Thiamine monophosphate synthase BA890_14595 PF01964 Radical SAM ThiC family BA890_14595 PF13667 ThiC-associated domain BA890_14600 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BA890_14605 PF00394 Multicopper oxidase BA890_14605 PF07731 Multicopper oxidase BA890_14605 PF07732 Multicopper oxidase BA890_14655 PF00132 Bacterial transferase hexapeptide (six repeats) BA890_14665 PF01488 Shikimate / quinate 5-dehydrogenase BA890_14665 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BA890_14665 PF08501 Shikimate dehydrogenase substrate binding domain BA890_14670 PF01218 Coproporphyrinogen III oxidase BA890_14675 PF01300 Telomere recombination BA890_14680 PF00731 AIR carboxylase BA890_14685 PF02222 ATP-grasp domain BA890_14685 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BA890_14690 PF01396 Topoisomerase DNA binding C4 zinc finger BA890_14695 PF04361 Protein of unknown function (DUF494) BA890_14700 PF17782 DprA winged helix domain BA890_14700 PF02481 DNA recombination-mediator protein A BA890_14710 PF01327 Polypeptide deformylase BA890_14715 PF00551 Formyl transferase BA890_14715 PF02911 Formyl transferase, C-terminal domain BA890_14720 PF01029 NusB family BA890_14720 PF01189 16S rRNA methyltransferase RsmB/F BA890_14725 PF02254 TrkA-N domain BA890_14725 PF02080 TrkA-C domain BA890_14730 PF02386 Cation transport protein BA890_14740 PF03006 Haemolysin-III related BA890_14745 PF07070 SpoOM protein BA890_14750 PF06288 Protein of unknown function (DUF1040) BA890_14755 PF13746 4Fe-4S dicluster domain BA890_14755 PF12801 4Fe-4S binding domain BA890_14755 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase BA890_14760 PF01636 Phosphotransferase enzyme family BA890_14765 PF01323 DSBA-like thioredoxin domain BA890_14770 PF01553 Acyltransferase BA890_14780 PF13335 Magnesium chelatase, subunit ChlI C-terminal BA890_14780 PF01078 Magnesium chelatase, subunit ChlI BA890_14785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BA890_14785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BA890_14785 PF00205 Thiamine pyrophosphate enzyme, central domain BA890_14795 PF00920 Dehydratase family BA890_14800 PF00585 C-terminal regulatory domain of Threonine dehydratase BA890_14800 PF00291 Pyridoxal-phosphate dependent enzyme BA890_14805 PF03466 LysR substrate binding domain BA890_14805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_14810 PF07690 Major Facilitator Superfamily BA890_14815 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_14820 PF00528 Binding-protein-dependent transport system inner membrane component BA890_14825 PF00132 Bacterial transferase hexapeptide (six repeats) BA890_14825 PF12804 MobA-like NTP transferase domain BA890_14830 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BA890_14830 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BA890_14835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BA890_14835 PF02874 ATP synthase alpha/beta family, beta-barrel domain BA890_14840 PF00231 ATP synthase BA890_14845 PF00306 ATP synthase alpha/beta chain, C terminal domain BA890_14845 PF02874 ATP synthase alpha/beta family, beta-barrel domain BA890_14845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BA890_14850 PF00213 ATP synthase delta (OSCP) subunit BA890_14855 PF00430 ATP synthase B/B' CF(0) BA890_14860 PF00137 ATP synthase subunit C BA890_14865 PF00119 ATP synthase A chain BA890_14870 PF03899 ATP synthase I chain BA890_14875 PF02195 ParB-like nuclease domain BA890_14875 PF17762 HTH domain found in ParB protein BA890_14880 PF13614 AAA domain BA890_14885 PF02527 rRNA small subunit methyltransferase G BA890_14890 PF13932 GidA associated domain BA890_14890 PF01134 Glucose inhibited division protein A BA890_14895 PF00258 Flavodoxin BA890_14900 PF10396 GTP-binding protein TrmE N-terminus BA890_14900 PF12631 MnmE helical domain BA890_14900 PF01926 50S ribosome-binding GTPase BA890_14905 PF02096 60Kd inner membrane protein BA890_14905 PF14849 YidC periplasmic domain BA890_14910 PF00825 Ribonuclease P BA890_14915 PF00468 Ribosomal protein L34 BA890_14920 PF00005 ABC transporter BA890_14925 PF00528 Binding-protein-dependent transport system inner membrane component BA890_14930 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_14935 PF07690 Major Facilitator Superfamily BA890_14940 PF03466 LysR substrate binding domain BA890_14940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_14945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_14945 PF03466 LysR substrate binding domain BA890_14955 PF03123 CAT RNA binding domain BA890_14955 PF00874 PRD domain BA890_14960 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BA890_14960 PF00367 phosphotransferase system, EIIB BA890_14960 PF02378 Phosphotransferase system, EIIC BA890_14965 PF00232 Glycosyl hydrolase family 1 BA890_14970 PF06039 Malate:quinone oxidoreductase (Mqo) BA890_14975 PF10415 Fumarase C C-terminus BA890_14975 PF00206 Lyase BA890_14980 PF00474 Sodium:solute symporter family BA890_14990 PF00171 Aldehyde dehydrogenase family BA890_14990 PF01619 Proline dehydrogenase BA890_14990 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BA890_14990 PF14850 DNA-binding domain of Proline dehydrogenase BA890_14995 PF12833 Helix-turn-helix domain BA890_15010 PF13350 Tyrosine phosphatase family BA890_15020 PF03466 LysR substrate binding domain BA890_15020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_15025 PF00171 Aldehyde dehydrogenase family BA890_15035 PF00072 Response regulator receiver domain BA890_15035 PF01627 Hpt domain BA890_15035 PF00512 His Kinase A (phospho-acceptor) domain BA890_15035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_15035 PF00672 HAMP domain BA890_15035 PF17149 Periplasmic sensor domain found in signal transduction proteins BA890_15045 PF00072 Response regulator receiver domain BA890_15045 PF00486 Transcriptional regulatory protein, C terminal BA890_15050 PF01266 FAD dependent oxidoreductase BA890_15065 PF07729 FCD domain BA890_15065 PF00392 Bacterial regulatory proteins, gntR family BA890_15070 PF05544 Proline racemase BA890_15075 PF01266 FAD dependent oxidoreductase BA890_15075 PF01266 FAD dependent oxidoreductase BA890_15080 PF03553 Na+/H+ antiporter family BA890_15085 PF00701 Dihydrodipicolinate synthetase family BA890_15090 PF00171 Aldehyde dehydrogenase family BA890_15095 PF07690 Major Facilitator Superfamily BA890_15100 PF00892 EamA-like transporter family BA890_15105 PF02311 AraC-like ligand binding domain BA890_15105 PF12833 Helix-turn-helix domain BA890_15110 PF01037 Lrp/AsnC ligand binding domain BA890_15115 PF00682 HMGL-like BA890_15115 PF08502 LeuA allosteric (dimerisation) domain BA890_15130 PF00892 EamA-like transporter family BA890_15135 PF09278 MerR, DNA binding BA890_15135 PF00376 MerR family regulatory protein BA890_15140 PF00589 Phage integrase family BA890_15140 PF14659 Phage integrase, N-terminal SAM-like domain BA890_15140 PF13356 Arm DNA-binding domain BA890_15180 PF00990 Diguanylate cyclase, GGDEF domain BA890_15180 PF00563 EAL domain BA890_15185 PF05025 RbsD / FucU transport protein family BA890_15190 PF00005 ABC transporter BA890_15195 PF02653 Branched-chain amino acid transport system / permease component BA890_15200 PF13407 Periplasmic binding protein domain BA890_15205 PF00294 pfkB family carbohydrate kinase BA890_15210 PF00356 Bacterial regulatory proteins, lacI family BA890_15215 PF13411 MerR HTH family regulatory protein BA890_15225 PF12805 FUSC-like inner membrane protein yccS BA890_15230 PF00580 UvrD/REP helicase N-terminal domain BA890_15230 PF12462 DNA helicase IV / RNA helicase N terminal BA890_15230 PF13361 UvrD-like helicase C-terminal domain BA890_15235 PF02142 MGS-like domain BA890_15240 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BA890_15245 PF00512 His Kinase A (phospho-acceptor) domain BA890_15245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_15245 PF01627 Hpt domain BA890_15245 PF00072 Response regulator receiver domain BA890_15245 PF00672 HAMP domain BA890_15260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_15260 PF03466 LysR substrate binding domain BA890_15265 PF16385 Domain of unknown function BA890_15265 PF00884 Sulfatase BA890_15270 PF04055 Radical SAM superfamily BA890_15270 PF13186 Iron-sulfur cluster-binding domain BA890_15275 PF07726 ATPase family associated with various cellular activities (AAA) BA890_15275 PF17863 AAA lid domain BA890_15290 PF00092 von Willebrand factor type A domain BA890_15305 PF01872 RibD C-terminal domain BA890_15305 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BA890_15310 PF00781 Diacylglycerol kinase catalytic domain BA890_15315 PF18081 Fanconi anemia-associated nuclease SAP domain BA890_15315 PF08774 VRR-NUC domain BA890_15320 PF07690 Major Facilitator Superfamily BA890_15330 PF01435 Peptidase family M48 BA890_15335 PF04011 LemA family BA890_15340 PF03606 C4-dicarboxylate anaerobic carrier BA890_15350 PF00583 Acetyltransferase (GNAT) family BA890_15350 PF00814 Glycoprotease family BA890_15355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_15355 PF00072 Response regulator receiver domain BA890_15360 PF01926 50S ribosome-binding GTPase BA890_15365 PF09456 RcsC Alpha-Beta-Loop (ABL) BA890_15365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_15365 PF00072 Response regulator receiver domain BA890_15365 PF00512 His Kinase A (phospho-acceptor) domain BA890_15370 PF00563 EAL domain BA890_15370 PF03707 Bacterial signalling protein N terminal repeat BA890_15370 PF00990 Diguanylate cyclase, GGDEF domain BA890_15370 PF13188 PAS domain BA890_15375 PF00196 Bacterial regulatory proteins, luxR family BA890_15375 PF00072 Response regulator receiver domain BA890_15380 PF00990 Diguanylate cyclase, GGDEF domain BA890_15390 PF00072 Response regulator receiver domain BA890_15390 PF00196 Bacterial regulatory proteins, luxR family BA890_15420 PF00892 EamA-like transporter family BA890_15435 PF00939 Sodium:sulfate symporter transmembrane region BA890_15445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_15445 PF17203 Single cache domain 3 BA890_15445 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BA890_15445 PF00989 PAS fold BA890_15450 PF00072 Response regulator receiver domain BA890_15450 PF12431 Transcriptional regulator BA890_15460 PF01645 Conserved region in glutamate synthase BA890_15465 PF00141 Peroxidase BA890_15490 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA890_15500 PF03480 Bacterial extracellular solute-binding protein, family 7 BA890_15505 PF07730 Histidine kinase BA890_15505 PF17200 Single Cache domain 2 BA890_15510 PF00072 Response regulator receiver domain BA890_15510 PF00196 Bacterial regulatory proteins, luxR family BA890_15515 PF03466 LysR substrate binding domain BA890_15515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_15520 PF01144 Coenzyme A transferase BA890_15530 PF01380 SIS domain BA890_15530 PF01418 Helix-turn-helix domain, rpiR family BA890_15540 PF00528 Binding-protein-dependent transport system inner membrane component BA890_15545 PF00528 Binding-protein-dependent transport system inner membrane component BA890_15550 PF00005 ABC transporter BA890_15555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA890_15560 PF00528 Binding-protein-dependent transport system inner membrane component BA890_15565 PF00528 Binding-protein-dependent transport system inner membrane component BA890_15565 PF12911 N-terminal TM domain of oligopeptide transport permease C BA890_15570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA890_15570 PF00005 ABC transporter BA890_15575 PF01804 Penicillin amidase BA890_15590 PF00512 His Kinase A (phospho-acceptor) domain BA890_15590 PF00672 HAMP domain BA890_15590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_15595 PF00072 Response regulator receiver domain BA890_15595 PF00486 Transcriptional regulatory protein, C terminal BA890_15605 PF01047 MarR family BA890_15610 PF16884 N-terminal domain of oxidoreductase BA890_15610 PF00107 Zinc-binding dehydrogenase BA890_15615 PF00149 Calcineurin-like phosphoesterase BA890_15615 PF12320 Type 5 capsule protein repressor C-terminal domain BA890_15620 PF13476 AAA domain BA890_15640 PF01638 HxlR-like helix-turn-helix BA890_15645 PF05368 NmrA-like family BA890_15650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_15650 PF03466 LysR substrate binding domain BA890_15660 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA890_15665 PF03480 Bacterial extracellular solute-binding protein, family 7 BA890_15670 PF01266 FAD dependent oxidoreductase BA890_15680 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_15680 PF04324 BFD-like [2Fe-2S] binding domain BA890_15685 PF01042 Endoribonuclease L-PSP BA890_15695 PF08212 Lipocalin-like domain BA890_15710 PF01212 Beta-eliminating lyase BA890_15715 PF00293 NUDIX domain BA890_15720 PF17868 AAA lid domain BA890_15720 PF12592 Protein of unknown function (DUF3763) BA890_15720 PF07728 AAA domain (dynein-related subfamily) BA890_15725 PF05762 VWA domain containing CoxE-like protein BA890_15735 PF03466 LysR substrate binding domain BA890_15735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_15740 PF01565 FAD binding domain BA890_15740 PF09330 D-lactate dehydrogenase, membrane binding BA890_15780 PF00990 Diguanylate cyclase, GGDEF domain BA890_15780 PF00072 Response regulator receiver domain BA890_15790 PF06965 Na+/H+ antiporter 1 BA890_15790 PF13462 Thioredoxin BA890_15810 PF13426 PAS domain BA890_15810 PF00990 Diguanylate cyclase, GGDEF domain BA890_15810 PF00563 EAL domain BA890_15815 PF14760 Rnk N-terminus BA890_15815 PF01272 Transcription elongation factor, GreA/GreB, C-term BA890_15820 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_15820 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BA890_15820 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BA890_15820 PF04324 BFD-like [2Fe-2S] binding domain BA890_15820 PF18267 Rubredoxin NAD+ reductase C-terminal domain BA890_15825 PF13806 Rieske-like [2Fe-2S] domain BA890_15830 PF01226 Formate/nitrite transporter BA890_15835 PF10414 Sirohaem synthase dimerisation region BA890_15835 PF14824 Sirohaem biosynthesis protein central BA890_15835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BA890_15850 PF03605 Anaerobic c4-dicarboxylate membrane transporter BA890_15865 PF11756 Nitrous oxide-stimulated promoter BA890_15870 PF07690 Major Facilitator Superfamily BA890_15875 PF00085 Thioredoxin BA890_15880 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BA890_15880 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BA890_15900 PF02634 FdhD/NarQ family BA890_15905 PF03466 LysR substrate binding domain BA890_15905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_15910 PF01568 Molydopterin dinucleotide binding domain BA890_15910 PF00384 Molybdopterin oxidoreductase BA890_15915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BA890_15915 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_15930 PF04143 Sulphur transport BA890_15940 PF00873 AcrB/AcrD/AcrF family BA890_15945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_15955 PF13597 Anaerobic ribonucleoside-triphosphate reductase BA890_15955 PF03477 ATP cone domain BA890_15965 PF01554 MatE BA890_15970 PF12833 Helix-turn-helix domain BA890_15970 PF12852 Cupin BA890_15975 PF00155 Aminotransferase class I and II BA890_15980 PF18030 RimK PreATP-grasp domain BA890_15980 PF08443 RimK-like ATP-grasp domain BA890_15990 PF07685 CobB/CobQ-like glutamine amidotransferase domain BA890_16000 PF00528 Binding-protein-dependent transport system inner membrane component BA890_16005 PF03459 TOBE domain BA890_16005 PF00005 ABC transporter BA890_16015 PF00563 EAL domain BA890_16015 PF01590 GAF domain BA890_16015 PF00990 Diguanylate cyclase, GGDEF domain BA890_16015 PF00360 Phytochrome region BA890_16020 PF00990 Diguanylate cyclase, GGDEF domain BA890_16020 PF05230 MASE2 domain BA890_16035 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BA890_16035 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BA890_16035 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BA890_16040 PF02233 NAD(P) transhydrogenase beta subunit BA890_16050 PF00072 Response regulator receiver domain BA890_16050 PF00486 Transcriptional regulatory protein, C terminal BA890_16065 PF00582 Universal stress protein family BA890_16085 PF01253 Translation initiation factor SUI1 BA890_16095 PF07478 D-ala D-ala ligase C-terminus BA890_16095 PF01820 D-ala D-ala ligase N-terminus BA890_16100 PF05036 Sporulation related domain BA890_16105 PF13380 CoA binding domain BA890_16105 PF00583 Acetyltransferase (GNAT) family BA890_16105 PF13607 Succinyl-CoA ligase like flavodoxin domain BA890_16110 PF03466 LysR substrate binding domain BA890_16110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_16115 PF16363 GDP-mannose 4,6 dehydratase BA890_16120 PF08447 PAS fold BA890_16120 PF05231 MASE1 BA890_16120 PF13426 PAS domain BA890_16120 PF08448 PAS fold BA890_16120 PF00563 EAL domain BA890_16120 PF00990 Diguanylate cyclase, GGDEF domain BA890_16125 PF03746 LamB/YcsF family BA890_16130 PF02682 Carboxyltransferase domain, subdomain C and D BA890_16135 PF02626 Carboxyltransferase domain, subdomain A and B BA890_16140 PF01593 Flavin containing amine oxidoreductase BA890_16150 PF00005 ABC transporter BA890_16155 PF13472 GDSL-like Lipase/Acylhydrolase family BA890_16160 PF12241 Trans-2-enoyl-CoA reductase catalytic region BA890_16160 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BA890_16160 PF07055 Enoyl reductase FAD binding domain BA890_16165 PF00563 EAL domain BA890_16165 PF00990 Diguanylate cyclase, GGDEF domain BA890_16165 PF13188 PAS domain BA890_16165 PF03707 Bacterial signalling protein N terminal repeat BA890_16175 PF00684 DnaJ central domain BA890_16175 PF01556 DnaJ C terminal domain BA890_16175 PF00226 DnaJ domain BA890_16190 PF03091 CutA1 divalent ion tolerance protein BA890_16200 PF12793 Sugar transport-related sRNA regulator N-term BA890_16200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA890_16210 PF03061 Thioesterase superfamily BA890_16215 PF01435 Peptidase family M48 BA890_16225 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BA890_16230 PF12262 Bacterial virulence factor lipase N-terminal BA890_16245 PF03741 Integral membrane protein TerC family BA890_16250 PF00149 Calcineurin-like phosphoesterase BA890_16250 PF02872 5'-nucleotidase, C-terminal domain BA890_16255 PF11398 Protein of unknown function (DUF2813) BA890_16260 PF06496 Protein of unknown function (DUF1097) BA890_16265 PF03466 LysR substrate binding domain BA890_16265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_16270 PF01226 Formate/nitrite transporter BA890_16275 PF04264 YceI-like domain BA890_16280 PF01292 Prokaryotic cytochrome b561 BA890_16295 PF00563 EAL domain BA890_16295 PF12792 CSS motif domain associated with EAL BA890_16300 PF00270 DEAD/DEAH box helicase BA890_16300 PF00271 Helicase conserved C-terminal domain BA890_16305 PF04336 Acyl carrier protein phosphodiesterase BA890_16310 PF12729 Four helix bundle sensory module for signal transduction BA890_16310 PF00672 HAMP domain BA890_16310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA890_16315 PF13419 Haloacid dehalogenase-like hydrolase BA890_16330 PF00294 pfkB family carbohydrate kinase BA890_16335 PF01268 Formate--tetrahydrofolate ligase BA890_16340 PF00483 Nucleotidyl transferase BA890_16345 PF00704 Glycosyl hydrolases family 18 BA890_16345 PF06483 Chitinase C BA890_16350 PF06719 AraC-type transcriptional regulator N-terminus BA890_16350 PF12833 Helix-turn-helix domain BA890_16355 PF00465 Iron-containing alcohol dehydrogenase BA890_16365 PF00005 ABC transporter BA890_16370 PF00528 Binding-protein-dependent transport system inner membrane component BA890_16375 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_16380 PF00528 Binding-protein-dependent transport system inner membrane component BA890_16395 PF00356 Bacterial regulatory proteins, lacI family BA890_16395 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BA890_16400 PF00381 PTS HPr component phosphorylation site BA890_16400 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BA890_16405 PF00294 pfkB family carbohydrate kinase BA890_16410 PF02378 Phosphotransferase system, EIIC BA890_16410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BA890_16415 PF00873 AcrB/AcrD/AcrF family BA890_16425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_16435 PF01571 Aminomethyltransferase folate-binding domain BA890_16435 PF08669 Glycine cleavage T-protein C-terminal barrel domain BA890_16445 PF00464 Serine hydroxymethyltransferase BA890_16450 PF01597 Glycine cleavage H-protein BA890_16455 PF02347 Glycine cleavage system P-protein BA890_16505 PF01063 Amino-transferase class IV BA890_16510 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_16515 PF02885 Glycosyl transferase family, helical bundle domain BA890_16515 PF00591 Glycosyl transferase family, a/b domain BA890_16520 PF03222 Tryptophan/tyrosine permease family BA890_16550 PF00012 Hsp70 protein BA890_16565 PF00676 Dehydrogenase E1 component BA890_16570 PF02780 Transketolase, C-terminal domain BA890_16570 PF02779 Transketolase, pyrimidine binding domain BA890_16575 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BA890_16575 PF00364 Biotin-requiring enzyme BA890_16575 PF02817 e3 binding domain BA890_16585 PF00202 Aminotransferase class-III BA890_16585 PF00501 AMP-binding enzyme BA890_16585 PF13193 AMP-binding enzyme C-terminal domain BA890_16585 PF00668 Condensation domain BA890_16585 PF16197 Ketoacyl-synthetase C-terminal extension BA890_16585 PF00109 Beta-ketoacyl synthase, N-terminal domain BA890_16585 PF02801 Beta-ketoacyl synthase, C-terminal domain BA890_16585 PF00550 Phosphopantetheine attachment site BA890_16590 PF08220 DeoR-like helix-turn-helix domain BA890_16590 PF00455 DeoR C terminal sensor domain BA890_16595 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BA890_16595 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BA890_16600 PF03928 Haem-degrading BA890_16615 PF13193 AMP-binding enzyme C-terminal domain BA890_16615 PF00501 AMP-binding enzyme BA890_16620 PF02780 Transketolase, C-terminal domain BA890_16620 PF02779 Transketolase, pyrimidine binding domain BA890_16620 PF00364 Biotin-requiring enzyme BA890_16625 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BA890_16625 PF00364 Biotin-requiring enzyme BA890_16625 PF02817 e3 binding domain BA890_16635 PF02896 PEP-utilising enzyme, TIM barrel domain BA890_16635 PF00391 PEP-utilising enzyme, mobile domain BA890_16635 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BA890_16640 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BA890_16650 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BA890_16650 PF01568 Molydopterin dinucleotide binding domain BA890_16650 PF00384 Molybdopterin oxidoreductase BA890_16655 PF00690 Cation transporter/ATPase, N-terminus BA890_16655 PF00689 Cation transporting ATPase, C-terminus BA890_16680 PF00158 Sigma-54 interaction domain BA890_16680 PF01590 GAF domain BA890_16685 PF10605 3HB-oligomer hydrolase (3HBOH) BA890_16690 PF00474 Sodium:solute symporter family BA890_16695 PF16875 Glycosyl hydrolase family 36 N-terminal domain BA890_16695 PF16874 Glycosyl hydrolase family 36 C-terminal domain BA890_16700 PF00356 Bacterial regulatory proteins, lacI family BA890_16705 PF00589 Phage integrase family BA890_16705 PF02899 Phage integrase, N-terminal SAM-like domain BA890_16725 PF03466 LysR substrate binding domain BA890_16725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_16730 PF00934 PE family BA890_16730 PF07859 alpha/beta hydrolase fold BA890_16735 PF03466 LysR substrate binding domain BA890_16735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_16740 PF03466 LysR substrate binding domain BA890_16740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_16760 PF03466 LysR substrate binding domain BA890_16760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_16770 PF00082 Subtilase family BA890_16770 PF04151 Bacterial pre-peptidase C-terminal domain BA890_16775 PF05995 Cysteine dioxygenase type I BA890_16785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_16785 PF03466 LysR substrate binding domain BA890_16795 PF01235 Sodium:alanine symporter family BA890_16800 PF00528 Binding-protein-dependent transport system inner membrane component BA890_16805 PF00528 Binding-protein-dependent transport system inner membrane component BA890_16810 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_16815 PF00005 ABC transporter BA890_16820 PF08031 Berberine and berberine like BA890_16820 PF01565 FAD binding domain BA890_16825 PF00141 Peroxidase BA890_16850 PF02574 Homocysteine S-methyltransferase BA890_16855 PF13520 Amino acid permease BA890_16865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BA890_16880 PF02028 BCCT, betaine/carnitine/choline family transporter BA890_16890 PF00171 Aldehyde dehydrogenase family BA890_16905 PF01040 UbiA prenyltransferase family BA890_16915 PF00510 Cytochrome c oxidase subunit III BA890_16920 PF00115 Cytochrome C and Quinol oxidase polypeptide I BA890_16925 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BA890_16925 PF06481 COX Aromatic Rich Motif BA890_16935 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BA890_16935 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BA890_16940 PF00378 Enoyl-CoA hydratase/isomerase BA890_16945 PF00378 Enoyl-CoA hydratase/isomerase BA890_16950 PF02770 Acyl-CoA dehydrogenase, middle domain BA890_16950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BA890_16950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BA890_16955 PF00171 Aldehyde dehydrogenase family BA890_16960 PF02803 Thiolase, C-terminal domain BA890_16960 PF00108 Thiolase, N-terminal domain BA890_16965 PF09278 MerR, DNA binding BA890_16965 PF00376 MerR family regulatory protein BA890_16970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BA890_16970 PF02770 Acyl-CoA dehydrogenase, middle domain BA890_16970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BA890_16975 PF01039 Carboxyl transferase domain BA890_16985 PF00682 HMGL-like BA890_16990 PF10063 Uncharacterized integral membrane protein (DUF2301) BA890_17000 PF08447 PAS fold BA890_17000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA890_17000 PF13426 PAS domain BA890_17005 PF00871 Acetokinase family BA890_17010 PF03707 Bacterial signalling protein N terminal repeat BA890_17010 PF00990 Diguanylate cyclase, GGDEF domain BA890_17010 PF00563 EAL domain BA890_17015 PF03880 DbpA RNA binding domain BA890_17015 PF00271 Helicase conserved C-terminal domain BA890_17015 PF00270 DEAD/DEAH box helicase BA890_17020 PF00465 Iron-containing alcohol dehydrogenase BA890_17025 PF00596 Class II Aldolase and Adducin N-terminal domain BA890_17030 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BA890_17030 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BA890_17035 PF07881 L-fucose isomerase, first N-terminal domain BA890_17035 PF07882 L-fucose isomerase, second N-terminal domain BA890_17035 PF02952 L-fucose isomerase, C-terminal domain BA890_17040 PF08220 DeoR-like helix-turn-helix domain BA890_17040 PF00455 DeoR C terminal sensor domain BA890_17045 PF03334 Na+/H+ antiporter subunit BA890_17050 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BA890_17070 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BA890_17070 PF13244 Domain of unknown function (DUF4040) BA890_17070 PF00361 Proton-conducting membrane transporter BA890_17070 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BA890_17080 PF00582 Universal stress protein family BA890_17085 PF08206 Ribonuclease B OB domain BA890_17085 PF00773 RNB domain BA890_17085 PF00575 S1 RNA binding domain BA890_17095 PF12849 PBP superfamily domain BA890_17110 PF18644 Phage integrase SAM-like domain BA890_17110 PF00589 Phage integrase family BA890_17115 PF14659 Phage integrase, N-terminal SAM-like domain BA890_17115 PF00589 Phage integrase family BA890_17160 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BA890_17160 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BA890_17165 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BA890_17165 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BA890_17170 PF00175 Oxidoreductase NAD-binding domain BA890_17170 PF00258 Flavodoxin BA890_17170 PF00667 FAD binding domain BA890_17175 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_17180 PF00202 Aminotransferase class-III BA890_17185 PF00067 Cytochrome P450 BA890_17190 PF13520 Amino acid permease BA890_17215 PF00107 Zinc-binding dehydrogenase BA890_17215 PF08240 Alcohol dehydrogenase GroES-like domain BA890_17230 PF00067 Cytochrome P450 BA890_17240 PF00561 alpha/beta hydrolase fold BA890_17245 PF05721 Phytanoyl-CoA dioxygenase (PhyH) BA890_17250 PF01261 Xylose isomerase-like TIM barrel BA890_17260 PF00440 Bacterial regulatory proteins, tetR family BA890_17265 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_17270 PF00085 Thioredoxin BA890_17275 PF00085 Thioredoxin BA890_17285 PF07690 Major Facilitator Superfamily BA890_17290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BA890_17290 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_17295 PF00581 Rhodanese-like domain BA890_17305 PF00696 Amino acid kinase family BA890_17310 PF06545 Protein of unknown function (DUF1116) BA890_17315 PF02629 CoA binding domain BA890_17315 PF00549 CoA-ligase BA890_17330 PF07690 Major Facilitator Superfamily BA890_17335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_17335 PF03466 LysR substrate binding domain BA890_17345 PF03928 Haem-degrading BA890_17350 PF00072 Response regulator receiver domain BA890_17350 PF00486 Transcriptional regulatory protein, C terminal BA890_17355 PF00512 His Kinase A (phospho-acceptor) domain BA890_17355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_17355 PF00989 PAS fold BA890_17355 PF16736 Single Cache-like BA890_17360 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BA890_17365 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BA890_17380 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA890_17395 PF01594 AI-2E family transporter BA890_17400 PF01527 Transposase BA890_17410 PF03466 LysR substrate binding domain BA890_17410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_17415 PF08543 Phosphomethylpyrimidine kinase BA890_17425 PF00529 HlyD membrane-fusion protein of T1SS BA890_17425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_17430 PF12794 Mechanosensitive ion channel inner membrane domain 1 BA890_17430 PF12795 Mechanosensitive ion channel porin domain BA890_17430 PF00924 Mechanosensitive ion channel BA890_17445 PF00005 ABC transporter BA890_17450 PF02405 Permease MlaE BA890_17460 PF13533 Biotin-lipoyl like BA890_17485 PF00990 Diguanylate cyclase, GGDEF domain BA890_17485 PF00072 Response regulator receiver domain BA890_17490 PF01925 Sulfite exporter TauE/SafE BA890_17495 PF01515 Phosphate acetyl/butaryl transferase BA890_17500 PF09339 IclR helix-turn-helix domain BA890_17500 PF01614 Bacterial transcriptional regulator BA890_17510 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA890_17515 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BA890_17520 PF03480 Bacterial extracellular solute-binding protein, family 7 BA890_17525 PF01266 FAD dependent oxidoreductase BA890_17540 PF03601 Conserved hypothetical protein 698 BA890_17545 PF00205 Thiamine pyrophosphate enzyme, central domain BA890_17545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BA890_17545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BA890_17550 PF12556 Cobaltochelatase CobS subunit N terminal BA890_17550 PF08406 CbbQ/NirQ/NorQ C-terminal BA890_17550 PF07728 AAA domain (dynein-related subfamily) BA890_17555 PF06213 Cobalamin biosynthesis protein CobT BA890_17555 PF11775 Cobalamin biosynthesis protein CobT VWA domain BA890_17560 PF13419 Haloacid dehalogenase-like hydrolase BA890_17565 PF07690 Major Facilitator Superfamily BA890_17570 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BA890_17570 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BA890_17575 PF01232 Mannitol dehydrogenase Rossmann domain BA890_17575 PF08125 Mannitol dehydrogenase C-terminal domain BA890_17580 PF04198 Putative sugar-binding domain BA890_17605 PF00155 Aminotransferase class I and II BA890_17620 PF12833 Helix-turn-helix domain BA890_17620 PF06719 AraC-type transcriptional regulator N-terminus BA890_17625 PF10509 Galactokinase galactose-binding signature BA890_17625 PF00288 GHMP kinases N terminal domain BA890_17625 PF08544 GHMP kinases C terminal BA890_17630 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BA890_17630 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BA890_17635 PF16363 GDP-mannose 4,6 dehydratase BA890_17640 PF08240 Alcohol dehydrogenase GroES-like domain BA890_17640 PF00107 Zinc-binding dehydrogenase BA890_17645 PF12833 Helix-turn-helix domain BA890_17650 PF03315 Serine dehydratase beta chain BA890_17650 PF03313 Serine dehydratase alpha chain BA890_17655 PF00551 Formyl transferase BA890_17665 PF01571 Aminomethyltransferase folate-binding domain BA890_17665 PF08669 Glycine cleavage T-protein C-terminal barrel domain BA890_17665 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_17665 PF17806 Sarcosine oxidase A3 domain BA890_17670 PF04267 Sarcosine oxidase, delta subunit family BA890_17675 PF01266 FAD dependent oxidoreductase BA890_17680 PF00464 Serine hydroxymethyltransferase BA890_17685 PF00970 Oxidoreductase FAD-binding domain BA890_17685 PF00175 Oxidoreductase NAD-binding domain BA890_17685 PF00111 2Fe-2S iron-sulfur cluster binding domain BA890_17690 PF00355 Rieske [2Fe-2S] domain BA890_17690 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BA890_17695 PF00202 Aminotransferase class-III BA890_17705 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA890_17715 PF03480 Bacterial extracellular solute-binding protein, family 7 BA890_17720 PF00171 Aldehyde dehydrogenase family BA890_17725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_17725 PF03466 LysR substrate binding domain BA890_17790 PF00306 ATP synthase alpha/beta chain, C terminal domain BA890_17790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BA890_17795 PF00213 ATP synthase delta (OSCP) subunit BA890_17795 PF00430 ATP synthase B/B' CF(0) BA890_17800 PF00137 ATP synthase subunit C BA890_17805 PF00119 ATP synthase A chain BA890_17820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BA890_17820 PF02874 ATP synthase alpha/beta family, beta-barrel domain BA890_17825 PF00248 Aldo/keto reductase family BA890_17835 PF02028 BCCT, betaine/carnitine/choline family transporter BA890_17845 PF00766 Electron transfer flavoprotein FAD-binding domain BA890_17845 PF01012 Electron transfer flavoprotein domain BA890_17850 PF13183 4Fe-4S dicluster domain BA890_17850 PF02754 Cysteine-rich domain BA890_17855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BA890_17870 PF12833 Helix-turn-helix domain BA890_17870 PF01965 DJ-1/PfpI family BA890_17875 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BA890_17880 PF00465 Iron-containing alcohol dehydrogenase BA890_17885 PF02685 Glucokinase BA890_17890 PF12706 Beta-lactamase superfamily domain BA890_17900 PF00005 ABC transporter BA890_17905 PF00563 EAL domain BA890_17905 PF12792 CSS motif domain associated with EAL BA890_17920 PF00271 Helicase conserved C-terminal domain BA890_17920 PF00270 DEAD/DEAH box helicase BA890_17925 PF07683 Cobalamin synthesis protein cobW C-terminal domain BA890_17925 PF02492 CobW/HypB/UreG, nucleotide-binding domain BA890_17930 PF01470 Pyroglutamyl peptidase BA890_17940 PF00291 Pyridoxal-phosphate dependent enzyme BA890_17945 PF12843 Putative quorum-sensing-regulated virulence factor BA890_17965 PF01329 Pterin 4 alpha carbinolamine dehydratase BA890_17970 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BA890_17975 PF13193 AMP-binding enzyme C-terminal domain BA890_17975 PF00501 AMP-binding enzyme BA890_17985 PF03466 LysR substrate binding domain BA890_17985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_17995 PF00892 EamA-like transporter family BA890_18005 PF00465 Iron-containing alcohol dehydrogenase BA890_18010 PF07995 Glucose / Sorbosone dehydrogenase BA890_18020 PF00210 Ferritin-like domain BA890_18025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA890_18025 PF00672 HAMP domain BA890_18035 PF12704 MacB-like periplasmic core domain BA890_18035 PF00005 ABC transporter BA890_18035 PF02687 FtsX-like permease family BA890_18040 PF00005 ABC transporter BA890_18040 PF12704 MacB-like periplasmic core domain BA890_18040 PF02687 FtsX-like permease family BA890_18060 PF00313 'Cold-shock' DNA-binding domain BA890_18080 PF00691 OmpA family BA890_18080 PF05736 OprF membrane domain BA890_18090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BA890_18090 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BA890_18095 PF01040 UbiA prenyltransferase family BA890_18100 PF02628 Cytochrome oxidase assembly protein BA890_18120 PF00510 Cytochrome c oxidase subunit III BA890_18125 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 BA890_18130 PF00115 Cytochrome C and Quinol oxidase polypeptide I BA890_18135 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BA890_18135 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BA890_18140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BA890_18140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BA890_18140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BA890_18140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BA890_18145 PF01810 LysE type translocator BA890_18165 PF01557 Fumarylacetoacetate (FAA) hydrolase family BA890_18185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_18185 PF03466 LysR substrate binding domain BA890_18190 PF00990 Diguanylate cyclase, GGDEF domain BA890_18190 PF08447 PAS fold BA890_18190 PF08448 PAS fold BA890_18190 PF00563 EAL domain BA890_18195 PF01476 LysM domain BA890_18195 PF08525 Opacity-associated protein A N-terminal motif BA890_18195 PF01551 Peptidase family M23 BA890_18220 PF02743 Cache domain BA890_18220 PF00672 HAMP domain BA890_18220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA890_18230 PF03222 Tryptophan/tyrosine permease family BA890_18250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA890_18260 PF01758 Sodium Bile acid symporter family BA890_18265 PF02567 Phenazine biosynthesis-like protein BA890_18275 PF00005 ABC transporter BA890_18290 PF12838 4Fe-4S dicluster domain BA890_18290 PF00384 Molybdopterin oxidoreductase BA890_18290 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BA890_18290 PF01568 Molydopterin dinucleotide binding domain BA890_18290 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BA890_18305 PF00873 AcrB/AcrD/AcrF family BA890_18315 PF00175 Oxidoreductase NAD-binding domain BA890_18315 PF00111 2Fe-2S iron-sulfur cluster binding domain BA890_18315 PF00970 Oxidoreductase FAD-binding domain BA890_18325 PF00990 Diguanylate cyclase, GGDEF domain BA890_18325 PF17158 Membrane-associated sensor, integral membrane domain BA890_18330 PF13302 Acetyltransferase (GNAT) domain BA890_18335 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BA890_18340 PF00582 Universal stress protein family BA890_18345 PF02525 Flavodoxin-like fold BA890_18350 PF00999 Sodium/hydrogen exchanger family BA890_18350 PF02254 TrkA-N domain BA890_18370 PF00128 Alpha amylase, catalytic domain BA890_18375 PF00465 Iron-containing alcohol dehydrogenase BA890_18380 PF01266 FAD dependent oxidoreductase BA890_18390 PF00202 Aminotransferase class-III BA890_18395 PF00171 Aldehyde dehydrogenase family BA890_18400 PF03480 Bacterial extracellular solute-binding protein, family 7 BA890_18410 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA890_18430 PF00999 Sodium/hydrogen exchanger family BA890_18435 PF01168 Alanine racemase, N-terminal domain BA890_18435 PF00842 Alanine racemase, C-terminal domain BA890_18445 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BA890_18445 PF13378 Enolase C-terminal domain-like BA890_18450 PF01063 Amino-transferase class IV BA890_18465 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BA890_18470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_18470 PF03466 LysR substrate binding domain BA890_18475 PF08240 Alcohol dehydrogenase GroES-like domain BA890_18475 PF00107 Zinc-binding dehydrogenase BA890_18480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_18480 PF03466 LysR substrate binding domain BA890_18490 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase BA890_18505 PF01844 HNH endonuclease BA890_18515 PF01584 CheW-like domain BA890_18515 PF00072 Response regulator receiver domain BA890_18520 PF01243 Pyridoxamine 5'-phosphate oxidase BA890_18555 PF01467 Cytidylyltransferase-like BA890_18560 PF02540 NAD synthase BA890_18565 PF00111 2Fe-2S iron-sulfur cluster binding domain BA890_18565 PF03473 MOSC domain BA890_18565 PF03476 MOSC N-terminal beta barrel domain BA890_18565 PF03473 MOSC domain BA890_18565 PF00111 2Fe-2S iron-sulfur cluster binding domain BA890_18565 PF03476 MOSC N-terminal beta barrel domain BA890_18575 PF01979 Amidohydrolase family BA890_18580 PF05661 Protein of unknown function (DUF808) BA890_18590 PF02811 PHP domain BA890_18590 PF07733 Bacterial DNA polymerase III alpha NTPase domain BA890_18590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BA890_18590 PF14579 Helix-hairpin-helix motif BA890_18590 PF00929 Exonuclease BA890_18590 PF11490 DNA polymerase III polC-type N-terminus II BA890_18605 PF00005 ABC transporter BA890_18605 PF00664 ABC transporter transmembrane region BA890_18615 PF12146 Serine aminopeptidase, S33 BA890_18620 PF12146 Serine aminopeptidase, S33 BA890_18625 PF03466 LysR substrate binding domain BA890_18625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_18645 PF00990 Diguanylate cyclase, GGDEF domain BA890_18645 PF07694 5TMR of 5TMR-LYT BA890_18650 PF00011 Hsp20/alpha crystallin family BA890_18660 PF00743 Flavin-binding monooxygenase-like BA890_18665 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BA890_18665 PF12833 Helix-turn-helix domain BA890_18670 PF02626 Carboxyltransferase domain, subdomain A and B BA890_18675 PF02682 Carboxyltransferase domain, subdomain C and D BA890_18680 PF03746 LamB/YcsF family BA890_18695 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA890_18710 PF00155 Aminotransferase class I and II BA890_18720 PF01037 Lrp/AsnC ligand binding domain BA890_18725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BA890_18725 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BA890_18740 PF07634 RtxA repeat BA890_18740 PF11713 Peptidase C80 family BA890_18740 PF11647 Membrane Localization Domain BA890_18740 PF16671 Actin cross-linking domain BA890_18740 PF12146 Serine aminopeptidase, S33 BA890_18750 PF01464 Transglycosylase SLT domain BA890_18750 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BA890_18785 PF02028 BCCT, betaine/carnitine/choline family transporter BA890_18790 PF00072 Response regulator receiver domain BA890_18795 PF00672 HAMP domain BA890_18795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_18795 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BA890_18795 PF00072 Response regulator receiver domain BA890_18795 PF00512 His Kinase A (phospho-acceptor) domain BA890_18795 PF01627 Hpt domain BA890_18810 PF00528 Binding-protein-dependent transport system inner membrane component BA890_18815 PF14785 Maltose transport system permease protein MalF P2 domain BA890_18815 PF00528 Binding-protein-dependent transport system inner membrane component BA890_18820 PF01547 Bacterial extracellular solute-binding protein BA890_18825 PF08402 TOBE domain BA890_18825 PF00005 ABC transporter BA890_18830 PF02397 Bacterial sugar transferase BA890_18845 PF13614 AAA domain BA890_18845 PF02706 Chain length determinant protein BA890_18845 PF13807 G-rich domain on putative tyrosine kinase BA890_18855 PF13439 Glycosyltransferase Family 4 BA890_18855 PF00534 Glycosyl transferases group 1 BA890_18870 PF13439 Glycosyltransferase Family 4 BA890_18870 PF00534 Glycosyl transferases group 1 BA890_18890 PF16925 Tetracyclin repressor-like, C-terminal domain BA890_18890 PF00440 Bacterial regulatory proteins, tetR family BA890_18895 PF16884 N-terminal domain of oxidoreductase BA890_18895 PF00107 Zinc-binding dehydrogenase BA890_18900 PF13417 Glutathione S-transferase, N-terminal domain BA890_18905 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BA890_18905 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BA890_18910 PF13419 Haloacid dehalogenase-like hydrolase BA890_18915 PF00127 Copper binding proteins, plastocyanin/azurin family BA890_18925 PF01266 FAD dependent oxidoreductase BA890_18930 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_18930 PF18113 Rubredoxin binding C-terminal domain BA890_18940 PF00355 Rieske [2Fe-2S] domain BA890_18940 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BA890_18945 PF02028 BCCT, betaine/carnitine/choline family transporter BA890_18950 PF03466 LysR substrate binding domain BA890_18950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_18955 PF00664 ABC transporter transmembrane region BA890_18955 PF00005 ABC transporter BA890_18960 PF00593 TonB dependent receptor BA890_18960 PF07715 TonB-dependent Receptor Plug Domain BA890_18965 PF00005 ABC transporter BA890_18970 PF01497 Periplasmic binding protein BA890_18975 PF01032 FecCD transport family BA890_18985 PF00529 HlyD membrane-fusion protein of T1SS BA890_18985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_18990 PF00664 ABC transporter transmembrane region BA890_18990 PF00005 ABC transporter BA890_19000 PF00196 Bacterial regulatory proteins, luxR family BA890_19005 PF00196 Bacterial regulatory proteins, luxR family BA890_19015 PF07726 ATPase family associated with various cellular activities (AAA) BA890_19015 PF17863 AAA lid domain BA890_19020 PF01882 Protein of unknown function DUF58 BA890_19035 PF13519 von Willebrand factor type A domain BA890_19045 PF00005 ABC transporter BA890_19050 PF00528 Binding-protein-dependent transport system inner membrane component BA890_19055 PF00528 Binding-protein-dependent transport system inner membrane component BA890_19060 PF12849 PBP superfamily domain BA890_19065 PF00672 HAMP domain BA890_19065 PF17200 Single Cache domain 2 BA890_19065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA890_19070 PF00270 DEAD/DEAH box helicase BA890_19070 PF00271 Helicase conserved C-terminal domain BA890_19080 PF03734 L,D-transpeptidase catalytic domain BA890_19080 PF01476 LysM domain BA890_19080 PF17969 L,D-transpeptidase C-terminal domain BA890_19085 PF00875 DNA photolyase BA890_19085 PF03441 FAD binding domain of DNA photolyase BA890_19090 PF13411 MerR HTH family regulatory protein BA890_19095 PF08349 Protein of unknown function (DUF1722) BA890_19100 PF01048 Phosphorylase superfamily BA890_19115 PF00990 Diguanylate cyclase, GGDEF domain BA890_19120 PF11742 Protein of unknown function (DUF3302) BA890_19125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_19125 PF00529 HlyD membrane-fusion protein of T1SS BA890_19130 PF07155 ECF-type riboflavin transporter, S component BA890_19140 PF12837 4Fe-4S binding domain BA890_19140 PF12801 4Fe-4S binding domain BA890_19145 PF12800 4Fe-4S binding domain BA890_19145 PF12838 4Fe-4S dicluster domain BA890_19150 PF00583 Acetyltransferase (GNAT) family BA890_19165 PF12945 Flagellar protein YcgR BA890_19165 PF07238 PilZ domain BA890_19170 PF05362 Lon protease (S16) C-terminal proteolytic domain BA890_19170 PF13654 AAA domain BA890_19180 PF00326 Prolyl oligopeptidase family BA890_19180 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BA890_19185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_19185 PF03466 LysR substrate binding domain BA890_19190 PF02652 L-lactate permease BA890_19195 PF01070 FMN-dependent dehydrogenase BA890_19205 PF00924 Mechanosensitive ion channel BA890_19210 PF00194 Eukaryotic-type carbonic anhydrase BA890_19220 PF00313 'Cold-shock' DNA-binding domain BA890_19230 PF00107 Zinc-binding dehydrogenase BA890_19230 PF08240 Alcohol dehydrogenase GroES-like domain BA890_19235 PF00155 Aminotransferase class I and II BA890_19240 PF00563 EAL domain BA890_19240 PF03707 Bacterial signalling protein N terminal repeat BA890_19240 PF13188 PAS domain BA890_19240 PF00990 Diguanylate cyclase, GGDEF domain BA890_19255 PF00080 Copper/zinc superoxide dismutase (SODC) BA890_19260 PF00512 His Kinase A (phospho-acceptor) domain BA890_19260 PF08448 PAS fold BA890_19260 PF13426 PAS domain BA890_19260 PF00072 Response regulator receiver domain BA890_19260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_19265 PF00072 Response regulator receiver domain BA890_19265 PF00486 Transcriptional regulatory protein, C terminal BA890_19280 PF03466 LysR substrate binding domain BA890_19280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_19285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA890_19310 PF00892 EamA-like transporter family BA890_19325 PF02321 Outer membrane efflux protein BA890_19335 PF13533 Biotin-lipoyl like BA890_19345 PF01594 AI-2E family transporter BA890_19350 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BA890_19355 PF00175 Oxidoreductase NAD-binding domain BA890_19355 PF00970 Oxidoreductase FAD-binding domain BA890_19365 PF09905 DNA-binding protein VF530 BA890_19370 PF00768 D-alanyl-D-alanine carboxypeptidase BA890_19370 PF07943 Penicillin-binding protein 5, C-terminal domain BA890_19375 PF00561 alpha/beta hydrolase fold BA890_19390 PF01734 Patatin-like phospholipase BA890_19395 PF01914 MarC family integral membrane protein BA890_19400 PF00881 Nitroreductase family BA890_19410 PF00375 Sodium:dicarboxylate symporter family BA890_19415 PF06803 Protein of unknown function (DUF1232) BA890_19425 PF07670 Nucleoside recognition BA890_19430 PF07670 Nucleoside recognition BA890_19435 PF00128 Alpha amylase, catalytic domain BA890_19440 PF00912 Transglycosylase BA890_19445 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BA890_19445 PF02806 Alpha amylase, C-terminal all-beta domain BA890_19445 PF00128 Alpha amylase, catalytic domain BA890_19450 PF02446 4-alpha-glucanotransferase BA890_19455 PF00343 Carbohydrate phosphorylase BA890_19460 PF00196 Bacterial regulatory proteins, luxR family BA890_19460 PF17874 MalT-like TPR region BA890_19475 PF02630 SCO1/SenC BA890_19480 PF00367 phosphotransferase system, EIIB BA890_19480 PF02378 Phosphotransferase system, EIIC BA890_19485 PF03193 RsgA GTPase BA890_19490 PF00375 Sodium:dicarboxylate symporter family BA890_19495 PF08543 Phosphomethylpyrimidine kinase BA890_19505 PF18494 Pullulanase Ins domain BA890_19505 PF03714 Bacterial pullanase-associated domain BA890_19505 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BA890_19505 PF11852 Domain of unknown function (DUF3372) BA890_19505 PF17967 Pullulanase N2 domain BA890_19510 PF00128 Alpha amylase, catalytic domain BA890_19510 PF02903 Alpha amylase, N-terminal ig-like domain BA890_19520 PF07148 Maltose operon periplasmic protein precursor (MalM) BA890_19525 PF02264 LamB porin BA890_19530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BA890_19530 PF00128 Alpha amylase, catalytic domain BA890_19535 PF00356 Bacterial regulatory proteins, lacI family BA890_19540 PF02378 Phosphotransferase system, EIIC BA890_19540 PF00367 phosphotransferase system, EIIB BA890_19550 PF07690 Major Facilitator Superfamily BA890_19555 PF00593 TonB dependent receptor BA890_19555 PF07715 TonB-dependent Receptor Plug Domain BA890_19560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_19560 PF03466 LysR substrate binding domain BA890_19565 PF01497 Periplasmic binding protein BA890_19570 PF01032 FecCD transport family BA890_19575 PF01032 FecCD transport family BA890_19580 PF00005 ABC transporter BA890_19585 PF00440 Bacterial regulatory proteins, tetR family BA890_19585 PF08360 QacR-like protein, C-terminal region BA890_19595 PF13533 Biotin-lipoyl like BA890_19600 PF01212 Beta-eliminating lyase BA890_19605 PF03222 Tryptophan/tyrosine permease family BA890_19620 PF04320 Protein with unknown function (DUF469) BA890_19635 PF00893 Small Multidrug Resistance protein BA890_19640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_19640 PF03466 LysR substrate binding domain BA890_19650 PF00171 Aldehyde dehydrogenase family BA890_19655 PF00202 Aminotransferase class-III BA890_19660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_19660 PF03466 LysR substrate binding domain BA890_19665 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BA890_19665 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BA890_19670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_19670 PF03466 LysR substrate binding domain BA890_19675 PF06339 Ectoine synthase BA890_19680 PF00474 Sodium:solute symporter family BA890_19695 PF01266 FAD dependent oxidoreductase BA890_19700 PF01042 Endoribonuclease L-PSP BA890_19705 PF02423 Ornithine cyclodeaminase/mu-crystallin family BA890_19710 PF12833 Helix-turn-helix domain BA890_19710 PF02311 AraC-like ligand binding domain BA890_19740 PF08244 Glycosyl hydrolases family 32 C terminal BA890_19740 PF00251 Glycosyl hydrolases family 32 N-terminal domain BA890_19745 PF02435 Levansucrase/Invertase BA890_19750 PF00141 Peroxidase BA890_19760 PF05193 Peptidase M16 inactive domain BA890_19760 PF00675 Insulinase (Peptidase family M16) BA890_19765 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain BA890_19765 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain BA890_19765 PF02278 Polysaccharide lyase family 8, super-sandwich domain BA890_19770 PF17386 Lacto-N-biose phosphorylase C-terminal domain BA890_19770 PF17385 Lacto-N-biose phosphorylase central domain BA890_19770 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain BA890_19775 PF07470 Glycosyl Hydrolase Family 88 BA890_19780 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BA890_19780 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BA890_19785 PF01370 NAD dependent epimerase/dehydratase family BA890_19790 PF00916 Sulfate permease family BA890_19790 PF01740 STAS domain BA890_19795 PF16353 Domain of unknown function(DUF4981) BA890_19795 PF02929 Beta galactosidase small chain BA890_19795 PF02837 Glycosyl hydrolases family 2, sugar binding domain BA890_19795 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BA890_19795 PF00703 Glycosyl hydrolases family 2 BA890_19800 PF00480 ROK family BA890_19805 PF12729 Four helix bundle sensory module for signal transduction BA890_19805 PF00672 HAMP domain BA890_19805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA890_19810 PF00005 ABC transporter BA890_19810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA890_19815 PF12911 N-terminal TM domain of oligopeptide transport permease C BA890_19815 PF00528 Binding-protein-dependent transport system inner membrane component BA890_19820 PF00528 Binding-protein-dependent transport system inner membrane component BA890_19825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA890_19835 PF13186 Iron-sulfur cluster-binding domain BA890_19835 PF04055 Radical SAM superfamily BA890_19840 PF00884 Sulfatase BA890_19845 PF16385 Domain of unknown function BA890_19845 PF00884 Sulfatase BA890_19850 PF01497 Periplasmic binding protein BA890_19855 PF07715 TonB-dependent Receptor Plug Domain BA890_19855 PF00593 TonB dependent receptor BA890_19855 PF07660 Secretin and TonB N terminus short domain BA890_19865 PF02653 Branched-chain amino acid transport system / permease component BA890_19870 PF00005 ABC transporter BA890_19875 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BA890_19880 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BA890_19880 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BA890_19885 PF00596 Class II Aldolase and Adducin N-terminal domain BA890_19890 PF02610 L-arabinose isomerase BA890_19890 PF11762 L-arabinose isomerase C-terminal domain BA890_19895 PF02311 AraC-like ligand binding domain BA890_19895 PF12833 Helix-turn-helix domain BA890_19900 PF01263 Aldose 1-epimerase BA890_19905 PF04616 Glycosyl hydrolases family 43 BA890_19905 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain BA890_19920 PF00528 Binding-protein-dependent transport system inner membrane component BA890_19925 PF00005 ABC transporter BA890_19930 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BA890_19935 PF00202 Aminotransferase class-III BA890_19940 PF00155 Aminotransferase class I and II BA890_19940 PF00392 Bacterial regulatory proteins, gntR family BA890_19950 PF00106 short chain dehydrogenase BA890_19955 PF00005 ABC transporter BA890_19975 PF02566 OsmC-like protein BA890_19980 PF01047 MarR family BA890_19985 PF00578 AhpC/TSA family BA890_19985 PF10417 C-terminal domain of 1-Cys peroxiredoxin BA890_19990 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_19990 PF13192 Thioredoxin domain BA890_19995 PF00884 Sulfatase BA890_20010 PF01037 Lrp/AsnC ligand binding domain BA890_20020 PF00474 Sodium:solute symporter family BA890_20030 PF01619 Proline dehydrogenase BA890_20030 PF14850 DNA-binding domain of Proline dehydrogenase BA890_20030 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BA890_20030 PF00171 Aldehyde dehydrogenase family BA890_20035 PF12833 Helix-turn-helix domain BA890_20050 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BA890_20050 PF01243 Pyridoxamine 5'-phosphate oxidase BA890_20055 PF00512 His Kinase A (phospho-acceptor) domain BA890_20055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_20055 PF02743 Cache domain BA890_20060 PF00158 Sigma-54 interaction domain BA890_20060 PF00072 Response regulator receiver domain BA890_20060 PF02954 Bacterial regulatory protein, Fis family BA890_20065 PF00529 HlyD membrane-fusion protein of T1SS BA890_20080 PF00664 ABC transporter transmembrane region BA890_20080 PF03412 Peptidase C39 family BA890_20080 PF00005 ABC transporter BA890_20090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BA890_20095 PF00246 Zinc carboxypeptidase BA890_20105 PF05127 Helicase BA890_20105 PF13718 GNAT acetyltransferase 2 BA890_20110 PF08775 ParB family BA890_20110 PF02195 ParB-like nuclease domain BA890_20115 PF13614 AAA domain BA890_20115 PF18607 ParA helix turn helix domain BA890_20130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA890_20130 PF00005 ABC transporter BA890_20135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BA890_20135 PF00005 ABC transporter BA890_20150 PF01709 Transcriptional regulator BA890_20160 PF00005 ABC transporter BA890_20165 PF02687 FtsX-like permease family BA890_20165 PF12704 MacB-like periplasmic core domain BA890_20180 PF06580 Histidine kinase BA890_20180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_20180 PF13492 GAF domain BA890_20180 PF07694 5TMR of 5TMR-LYT BA890_20185 PF04397 LytTr DNA-binding domain BA890_20185 PF00072 Response regulator receiver domain BA890_20190 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BA890_20200 PF03616 Sodium/glutamate symporter BA890_20210 PF00005 ABC transporter BA890_20225 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BA890_20240 PF03466 LysR substrate binding domain BA890_20240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_20245 PF02678 Pirin BA890_20245 PF17954 Quercetinase C-terminal cupin domain BA890_20250 PF07681 DoxX BA890_20260 PF06029 AlkA N-terminal domain BA890_20260 PF00730 HhH-GPD superfamily base excision DNA repair protein BA890_20265 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BA890_20265 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BA890_20270 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BA890_20285 PF03600 Citrate transporter BA890_20305 PF00704 Glycosyl hydrolases family 18 BA890_20305 PF08329 Chitinase A, N-terminal domain BA890_20310 PF06865 Pyrimidine/purine nucleoside phosphorylase BA890_20320 PF00563 EAL domain BA890_20320 PF00990 Diguanylate cyclase, GGDEF domain BA890_20325 PF01554 MatE BA890_20330 PF00069 Protein kinase domain BA890_20330 PF03793 PASTA domain BA890_20335 PF00849 RNA pseudouridylate synthase BA890_20345 PF00990 Diguanylate cyclase, GGDEF domain BA890_20345 PF17152 Periplasmic sensor domain BA890_20355 PF00756 Putative esterase BA890_20360 PF00107 Zinc-binding dehydrogenase BA890_20360 PF08240 Alcohol dehydrogenase GroES-like domain BA890_20365 PF00596 Class II Aldolase and Adducin N-terminal domain BA890_20375 PF03466 LysR substrate binding domain BA890_20375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_20380 PF09339 IclR helix-turn-helix domain BA890_20380 PF01614 Bacterial transcriptional regulator BA890_20390 PF10688 Bacterial inner membrane protein BA890_20400 PF00294 pfkB family carbohydrate kinase BA890_20405 PF01081 KDPG and KHG aldolase BA890_20410 PF04954 Siderophore-interacting protein BA890_20410 PF08021 Siderophore-interacting FAD-binding domain BA890_20415 PF01810 LysE type translocator BA890_20420 PF01037 Lrp/AsnC ligand binding domain BA890_20435 PF03922 OmpW family BA890_20445 PF12706 Beta-lactamase superfamily domain BA890_20450 PF01661 Macro domain BA890_20455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BA890_20480 PF13556 PucR C-terminal helix-turn-helix domain BA890_20480 PF17853 GGDEF-like domain BA890_20480 PF05651 Putative sugar diacid recognition BA890_20485 PF02447 GntP family permease BA890_20490 PF02595 Glycerate kinase family BA890_20505 PF03264 NapC/NirT cytochrome c family, N-terminal region BA890_20510 PF01568 Molydopterin dinucleotide binding domain BA890_20510 PF00384 Molybdopterin oxidoreductase BA890_20510 PF18364 Molybdopterin oxidoreductase N-terminal domain BA890_20520 PF02581 Thiamine monophosphate synthase BA890_20525 PF02110 Hydroxyethylthiazole kinase family BA890_20530 PF03070 TENA/THI-4/PQQC family BA890_20535 PF09084 NMT1/THI5 like BA890_20540 PF00528 Binding-protein-dependent transport system inner membrane component BA890_20545 PF00005 ABC transporter BA890_20550 PF08543 Phosphomethylpyrimidine kinase BA890_20555 PF01523 Putative modulator of DNA gyrase BA890_20560 PF01523 Putative modulator of DNA gyrase BA890_20565 PF04013 Putative SAM-dependent RNA methyltransferase BA890_20625 PF10928 Protein of unknown function (DUF2810) BA890_20630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BA890_20630 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BA890_20640 PF03009 Glycerophosphoryl diester phosphodiesterase family BA890_20650 PF00486 Transcriptional regulatory protein, C terminal BA890_20650 PF00072 Response regulator receiver domain BA890_20655 PF00672 HAMP domain BA890_20655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_20655 PF00512 His Kinase A (phospho-acceptor) domain BA890_20660 PF07715 TonB-dependent Receptor Plug Domain BA890_20660 PF00593 TonB dependent receptor BA890_20670 PF01618 MotA/TolQ/ExbB proton channel family BA890_20675 PF01618 MotA/TolQ/ExbB proton channel family BA890_20680 PF02472 Biopolymer transport protein ExbD/TolR BA890_20700 PF00326 Prolyl oligopeptidase family BA890_20700 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BA890_20705 PF07690 Major Facilitator Superfamily BA890_20710 PF00491 Arginase family BA890_20715 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BA890_20715 PF17944 Arginine decarboxylase C-terminal helical extension BA890_20715 PF17810 Arginine decarboxylase helical bundle domain BA890_20720 PF00753 Metallo-beta-lactamase superfamily BA890_20725 PF18030 RimK PreATP-grasp domain BA890_20725 PF08443 RimK-like ATP-grasp domain BA890_20730 PF08443 RimK-like ATP-grasp domain BA890_20730 PF18030 RimK PreATP-grasp domain BA890_20750 PF00990 Diguanylate cyclase, GGDEF domain BA890_20755 PF05525 Branched-chain amino acid transport protein BA890_20765 PF01266 FAD dependent oxidoreductase BA890_20780 PF07662 Na+ dependent nucleoside transporter C-terminus BA890_20780 PF07670 Nucleoside recognition BA890_20780 PF01773 Na+ dependent nucleoside transporter N-terminus BA890_20795 PF00563 EAL domain BA890_20795 PF00990 Diguanylate cyclase, GGDEF domain BA890_20795 PF03707 Bacterial signalling protein N terminal repeat BA890_20810 PF00990 Diguanylate cyclase, GGDEF domain BA890_20815 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BA890_20825 PF01625 Peptide methionine sulfoxide reductase BA890_20825 PF01641 SelR domain BA890_20830 PF02566 OsmC-like protein BA890_20835 PF14602 Hexapeptide repeat of succinyl-transferase BA890_20835 PF12464 Maltose acetyltransferase BA890_20840 PF05656 Protein of unknown function (DUF805) BA890_20860 PF00005 ABC transporter BA890_20865 PF01979 Amidohydrolase family BA890_20875 PF03466 LysR substrate binding domain BA890_20875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_20880 PF13419 Haloacid dehalogenase-like hydrolase BA890_20895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_20900 PF12704 MacB-like periplasmic core domain BA890_20900 PF02687 FtsX-like permease family BA890_20900 PF00005 ABC transporter BA890_20905 PF02321 Outer membrane efflux protein BA890_20910 PF00657 GDSL-like Lipase/Acylhydrolase BA890_20925 PF13419 Haloacid dehalogenase-like hydrolase BA890_20935 PF00266 Aminotransferase class-V BA890_20945 PF00583 Acetyltransferase (GNAT) family BA890_20945 PF01047 MarR family BA890_20950 PF00005 ABC transporter BA890_20955 PF00528 Binding-protein-dependent transport system inner membrane component BA890_20960 PF07702 UTRA domain BA890_20960 PF00392 Bacterial regulatory proteins, gntR family BA890_20970 PF01266 FAD dependent oxidoreductase BA890_20975 PF18027 Cytosolic carboxypeptidase N-terminal domain BA890_20975 PF00246 Zinc carboxypeptidase BA890_20980 PF00691 OmpA family BA890_20980 PF01389 OmpA-like transmembrane domain BA890_20985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_20985 PF03466 LysR substrate binding domain BA890_20990 PF03315 Serine dehydratase beta chain BA890_20990 PF03313 Serine dehydratase alpha chain BA890_21010 PF08264 Anticodon-binding domain of tRNA BA890_21010 PF00133 tRNA synthetases class I (I, L, M and V) BA890_21025 PF01070 FMN-dependent dehydrogenase BA890_21050 PF00581 Rhodanese-like domain BA890_21055 PF00166 Chaperonin 10 Kd subunit BA890_21060 PF00118 TCP-1/cpn60 chaperonin family BA890_21065 PF01810 LysE type translocator BA890_21070 PF03466 LysR substrate binding domain BA890_21070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_21080 PF12833 Helix-turn-helix domain BA890_21085 PF06751 Ethanolamine ammonia lyase large subunit (EutB) BA890_21090 PF05985 Ethanolamine ammonia-lyase light chain (EutC) BA890_21095 PF13520 Amino acid permease BA890_21100 PF01641 SelR domain BA890_21100 PF01625 Peptide methionine sulfoxide reductase BA890_21110 PF00857 Isochorismatase family BA890_21120 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BA890_21120 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BA890_21135 PF00892 EamA-like transporter family BA890_21140 PF03466 LysR substrate binding domain BA890_21140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_21145 PF17185 NlpE C-terminal OB domain BA890_21145 PF04170 NlpE N-terminal domain BA890_21150 PF02001 Protein of unknown function DUF134 BA890_21170 PF14492 Elongation Factor G, domain II BA890_21170 PF00679 Elongation factor G C-terminus BA890_21170 PF00009 Elongation factor Tu GTP binding domain BA890_21170 PF03764 Elongation factor G, domain IV BA890_21170 PF03144 Elongation factor Tu domain 2 BA890_21175 PF02264 LamB porin BA890_21175 PF11471 Maltoporin periplasmic N-terminal extension BA890_21185 PF00376 MerR family regulatory protein BA890_21185 PF09278 MerR, DNA binding BA890_21205 PF13091 PLD-like domain BA890_21210 PF00529 HlyD membrane-fusion protein of T1SS BA890_21210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_21215 PF00873 AcrB/AcrD/AcrF family BA890_21230 PF00005 ABC transporter BA890_21230 PF08402 TOBE domain BA890_21255 PF00392 Bacterial regulatory proteins, gntR family BA890_21255 PF07702 UTRA domain BA890_21260 PF02028 BCCT, betaine/carnitine/choline family transporter BA890_21275 PF00873 AcrB/AcrD/AcrF family BA890_21285 PF03466 LysR substrate binding domain BA890_21285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_21290 PF13416 Bacterial extracellular solute-binding protein BA890_21295 PF00579 tRNA synthetases class I (W and Y) BA890_21300 PF00196 Bacterial regulatory proteins, luxR family BA890_21310 PF02896 PEP-utilising enzyme, TIM barrel domain BA890_21310 PF00391 PEP-utilising enzyme, mobile domain BA890_21310 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BA890_21315 PF03618 Kinase/pyrophosphorylase BA890_21325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_21325 PF03466 LysR substrate binding domain BA890_21335 PF00501 AMP-binding enzyme BA890_21335 PF13193 AMP-binding enzyme C-terminal domain BA890_21340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_21340 PF00989 PAS fold BA890_21340 PF00512 His Kinase A (phospho-acceptor) domain BA890_21345 PF00072 Response regulator receiver domain BA890_21345 PF00196 Bacterial regulatory proteins, luxR family BA890_21350 PF07690 Major Facilitator Superfamily BA890_21355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_21355 PF03466 LysR substrate binding domain BA890_21365 PF00892 EamA-like transporter family BA890_21375 PF08461 Ribonuclease R winged-helix domain BA890_21375 PF00575 S1 RNA binding domain BA890_21375 PF17876 Cold shock domain BA890_21375 PF08206 Ribonuclease B OB domain BA890_21375 PF00773 RNB domain BA890_21380 PF00313 'Cold-shock' DNA-binding domain BA890_21390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_21390 PF03466 LysR substrate binding domain BA890_21395 PF00155 Aminotransferase class I and II BA890_21400 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_21410 PF00860 Permease family BA890_21420 PF00576 HIUase/Transthyretin family BA890_21440 PF01799 [2Fe-2S] binding domain BA890_21440 PF00111 2Fe-2S iron-sulfur cluster binding domain BA890_21445 PF08362 YcdC-like protein, C-terminal region BA890_21445 PF00440 Bacterial regulatory proteins, tetR family BA890_21450 PF03358 NADPH-dependent FMN reductase BA890_21470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_21470 PF03466 LysR substrate binding domain BA890_21475 PF00221 Aromatic amino acid lyase BA890_21480 PF01175 Urocanase Rossmann-like domain BA890_21480 PF17392 Urocanase C-terminal domain BA890_21480 PF17391 Urocanase N-terminal domain BA890_21485 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) BA890_21490 PF00202 Aminotransferase class-III BA890_21495 PF00171 Aldehyde dehydrogenase family BA890_21500 PF01037 Lrp/AsnC ligand binding domain BA890_21505 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BA890_21510 PF01321 Creatinase/Prolidase N-terminal domain BA890_21510 PF00557 Metallopeptidase family M24 BA890_21515 PF00356 Bacterial regulatory proteins, lacI family BA890_21520 PF13419 Haloacid dehalogenase-like hydrolase BA890_21525 PF00232 Glycosyl hydrolase family 1 BA890_21530 PF02378 Phosphotransferase system, EIIC BA890_21530 PF00367 phosphotransferase system, EIIB BA890_21530 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BA890_21535 PF00232 Glycosyl hydrolase family 1 BA890_21555 PF08240 Alcohol dehydrogenase GroES-like domain BA890_21555 PF00107 Zinc-binding dehydrogenase BA890_21560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_21560 PF03466 LysR substrate binding domain BA890_21570 PF00271 Helicase conserved C-terminal domain BA890_21570 PF00270 DEAD/DEAH box helicase BA890_21580 PF03099 Biotin/lipoate A/B protein ligase family BA890_21610 PF02798 Glutathione S-transferase, N-terminal domain BA890_21625 PF00462 Glutaredoxin BA890_21625 PF08534 Redoxin BA890_21630 PF00962 Adenosine/AMP deaminase BA890_21645 PF00313 'Cold-shock' DNA-binding domain BA890_21650 PF02678 Pirin BA890_21650 PF05726 Pirin C-terminal cupin domain BA890_21655 PF01734 Patatin-like phospholipase BA890_21665 PF01047 MarR family BA890_21670 PF03733 Inner membrane component domain BA890_21675 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BA890_21680 PF08019 Phosphoethanolamine transferase EptA/EptB BA890_21680 PF00884 Sulfatase BA890_21685 PF01219 Prokaryotic diacylglycerol kinase BA890_21700 PF01323 DSBA-like thioredoxin domain BA890_21710 PF00255 Glutathione peroxidase BA890_21715 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BA890_21735 PF01966 HD domain BA890_21740 PF01769 Divalent cation transporter BA890_21740 PF03448 MgtE intracellular N domain BA890_21740 PF00571 CBS domain BA890_21745 PF03109 ABC1 family BA890_21755 PF00155 Aminotransferase class I and II BA890_21755 PF00392 Bacterial regulatory proteins, gntR family BA890_21760 PF13520 Amino acid permease BA890_21765 PF13404 AsnC-type helix-turn-helix domain BA890_21765 PF01037 Lrp/AsnC ligand binding domain BA890_21770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_21770 PF03466 LysR substrate binding domain BA890_21785 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BA890_21785 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BA890_21790 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BA890_21795 PF01554 MatE BA890_21800 PF04363 Protein of unknown function (DUF496) BA890_21810 PF04337 Protein of unknown function, DUF480 BA890_21815 PF01541 GIY-YIG catalytic domain BA890_21825 PF00072 Response regulator receiver domain BA890_21825 PF09308 LuxQ, periplasmic BA890_21825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_21825 PF00512 His Kinase A (phospho-acceptor) domain BA890_21835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_21835 PF00529 HlyD membrane-fusion protein of T1SS BA890_21855 PF01037 Lrp/AsnC ligand binding domain BA890_21875 PF07549 SecD/SecF GG Motif BA890_21875 PF02355 Protein export membrane protein BA890_21875 PF13721 SecD export protein N-terminal TM region BA890_21880 PF07549 SecD/SecF GG Motif BA890_21880 PF02355 Protein export membrane protein BA890_21885 PF01810 LysE type translocator BA890_21890 PF00106 short chain dehydrogenase BA890_21895 PF02803 Thiolase, C-terminal domain BA890_21895 PF00108 Thiolase, N-terminal domain BA890_21905 PF00561 alpha/beta hydrolase fold BA890_21905 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus BA890_21915 PF03264 NapC/NirT cytochrome c family, N-terminal region BA890_21920 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) BA890_21925 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BA890_21925 PF00384 Molybdopterin oxidoreductase BA890_21925 PF01568 Molydopterin dinucleotide binding domain BA890_21935 PF12838 4Fe-4S dicluster domain BA890_21935 PF13187 4Fe-4S dicluster domain BA890_21940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_21940 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BA890_21940 PF00672 HAMP domain BA890_21940 PF07730 Histidine kinase BA890_21945 PF00072 Response regulator receiver domain BA890_21945 PF00196 Bacterial regulatory proteins, luxR family BA890_21960 PF01546 Peptidase family M20/M25/M40 BA890_21960 PF07687 Peptidase dimerisation domain BA890_21965 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BA890_21970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BA890_21975 PF00873 AcrB/AcrD/AcrF family BA890_21980 PF12729 Four helix bundle sensory module for signal transduction BA890_21980 PF00672 HAMP domain BA890_21980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA890_21985 PF00472 RF-1 domain BA890_21990 PF13419 Haloacid dehalogenase-like hydrolase BA890_21995 PF00691 OmpA family BA890_21995 PF01389 OmpA-like transmembrane domain BA890_22000 PF00793 DAHP synthetase I family BA890_22005 PF08447 PAS fold BA890_22005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BA890_22010 PF02779 Transketolase, pyrimidine binding domain BA890_22010 PF00456 Transketolase, thiamine diphosphate binding domain BA890_22010 PF02780 Transketolase, C-terminal domain BA890_22015 PF00923 Transaldolase/Fructose-6-phosphate aldolase BA890_22025 PF16868 NMT1-like family BA890_22035 PF00581 Rhodanese-like domain BA890_22045 PF00899 ThiF family BA890_22050 PF00994 Probable molybdopterin binding domain BA890_22050 PF03454 MoeA C-terminal region (domain IV) BA890_22050 PF03453 MoeA N-terminal region (domain I and II) BA890_22055 PF01227 GTP cyclohydrolase I BA890_22065 PF00654 Voltage gated chloride channel BA890_22080 PF00248 Aldo/keto reductase family BA890_22085 PF03853 YjeF-related protein N-terminus BA890_22085 PF01256 Carbohydrate kinase BA890_22090 PF00478 IMP dehydrogenase / GMP reductase domain BA890_22095 PF00589 Phage integrase family BA890_22095 PF02899 Phage integrase, N-terminal SAM-like domain BA890_22100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_22100 PF03466 LysR substrate binding domain BA890_22105 PF12146 Serine aminopeptidase, S33 BA890_22125 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BA890_22130 PF06772 Bacterial low temperature requirement A protein (LtrA) BA890_22135 PF12146 Serine aminopeptidase, S33 BA890_22140 PF12146 Serine aminopeptidase, S33 BA890_22150 PF06719 AraC-type transcriptional regulator N-terminus BA890_22150 PF12833 Helix-turn-helix domain BA890_22155 PF01614 Bacterial transcriptional regulator BA890_22155 PF09339 IclR helix-turn-helix domain BA890_22160 PF12146 Serine aminopeptidase, S33 BA890_22165 PF02803 Thiolase, C-terminal domain BA890_22165 PF00108 Thiolase, N-terminal domain BA890_22170 PF01144 Coenzyme A transferase BA890_22175 PF01144 Coenzyme A transferase BA890_22180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_22180 PF03466 LysR substrate binding domain BA890_22185 PF13378 Enolase C-terminal domain-like BA890_22185 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BA890_22190 PF02426 Muconolactone delta-isomerase BA890_22195 PF04444 Catechol dioxygenase N terminus BA890_22195 PF00775 Dioxygenase BA890_22200 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BA890_22200 PF00355 Rieske [2Fe-2S] domain BA890_22205 PF00866 Ring hydroxylating beta subunit BA890_22210 PF00175 Oxidoreductase NAD-binding domain BA890_22210 PF00111 2Fe-2S iron-sulfur cluster binding domain BA890_22210 PF00970 Oxidoreductase FAD-binding domain BA890_22215 PF00106 short chain dehydrogenase BA890_22220 PF07690 Major Facilitator Superfamily BA890_22225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_22225 PF03466 LysR substrate binding domain BA890_22230 PF07687 Peptidase dimerisation domain BA890_22230 PF01546 Peptidase family M20/M25/M40 BA890_22235 PF03606 C4-dicarboxylate anaerobic carrier BA890_22245 PF02423 Ornithine cyclodeaminase/mu-crystallin family BA890_22260 PF07722 Peptidase C26 BA890_22265 PF12833 Helix-turn-helix domain BA890_22265 PF10114 Sensory domain found in PocR BA890_22280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_22280 PF03466 LysR substrate binding domain BA890_22285 PF01266 FAD dependent oxidoreductase BA890_22290 PF08943 CsiD BA890_22305 PF03466 LysR substrate binding domain BA890_22305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_22315 PF00905 Penicillin binding protein transpeptidase domain BA890_22315 PF14814 Bifunctional transglycosylase second domain BA890_22315 PF00912 Transglycosylase BA890_22320 PF00248 Aldo/keto reductase family BA890_22325 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BA890_22335 PF03466 LysR substrate binding domain BA890_22335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_22340 PF03480 Bacterial extracellular solute-binding protein, family 7 BA890_22350 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA890_22360 PF01261 Xylose isomerase-like TIM barrel BA890_22365 PF01220 Dehydroquinase class II BA890_22370 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BA890_22370 PF08501 Shikimate dehydrogenase substrate binding domain BA890_22375 PF04909 Amidohydrolase BA890_22380 PF03737 Aldolase/RraA BA890_22385 PF04303 PrpF protein BA890_22390 PF04909 Amidohydrolase BA890_22400 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BA890_22410 PF07715 TonB-dependent Receptor Plug Domain BA890_22410 PF00593 TonB dependent receptor BA890_22415 PF03466 LysR substrate binding domain BA890_22415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_22425 PF00196 Bacterial regulatory proteins, luxR family BA890_22425 PF00072 Response regulator receiver domain BA890_22430 PF01494 FAD binding domain BA890_22440 PF12706 Beta-lactamase superfamily domain BA890_22445 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA890_22455 PF03480 Bacterial extracellular solute-binding protein, family 7 BA890_22465 PF00664 ABC transporter transmembrane region BA890_22465 PF00005 ABC transporter BA890_22475 PF13533 Biotin-lipoyl like BA890_22485 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA890_22495 PF03480 Bacterial extracellular solute-binding protein, family 7 BA890_22500 PF01575 MaoC like domain BA890_22500 PF00171 Aldehyde dehydrogenase family BA890_22505 PF05138 Phenylacetic acid catabolic protein BA890_22510 PF06243 Phenylacetic acid degradation B BA890_22515 PF05138 Phenylacetic acid catabolic protein BA890_22520 PF01883 Iron-sulfur cluster assembly protein BA890_22525 PF00175 Oxidoreductase NAD-binding domain BA890_22525 PF00970 Oxidoreductase FAD-binding domain BA890_22525 PF00111 2Fe-2S iron-sulfur cluster binding domain BA890_22530 PF00378 Enoyl-CoA hydratase/isomerase BA890_22535 PF00378 Enoyl-CoA hydratase/isomerase BA890_22540 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain BA890_22540 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BA890_22540 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BA890_22545 PF03061 Thioesterase superfamily BA890_22550 PF00108 Thiolase, N-terminal domain BA890_22550 PF02803 Thiolase, C-terminal domain BA890_22555 PF00501 AMP-binding enzyme BA890_22555 PF14535 AMP-binding enzyme C-terminal domain BA890_22560 PF07848 PaaX-like protein BA890_22560 PF08223 PaaX-like protein C-terminal domain BA890_22565 PF00132 Bacterial transferase hexapeptide (six repeats) BA890_22595 PF00132 Bacterial transferase hexapeptide (six repeats) BA890_22615 PF03466 LysR substrate binding domain BA890_22615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_22620 PF00795 Carbon-nitrogen hydrolase BA890_22625 PF01979 Amidohydrolase family BA890_22630 PF00248 Aldo/keto reductase family BA890_22635 PF08220 DeoR-like helix-turn-helix domain BA890_22635 PF00455 DeoR C terminal sensor domain BA890_22640 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BA890_22640 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BA890_22645 PF17042 Nucleotide-binding C-terminal domain BA890_22645 PF07005 Sugar-binding N-terminal domain BA890_22650 PF00596 Class II Aldolase and Adducin N-terminal domain BA890_22655 PF01261 Xylose isomerase-like TIM barrel BA890_22660 PF02447 GntP family permease BA890_22665 PF00795 Carbon-nitrogen hydrolase BA890_22665 PF02540 NAD synthase BA890_22690 PF01875 Memo-like protein BA890_22705 PF00149 Calcineurin-like phosphoesterase BA890_22710 PF03466 LysR substrate binding domain BA890_22710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_22715 PF07690 Major Facilitator Superfamily BA890_22720 PF00892 EamA-like transporter family BA890_22730 PF01627 Hpt domain BA890_22730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_22730 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_22730 PF00072 Response regulator receiver domain BA890_22730 PF00512 His Kinase A (phospho-acceptor) domain BA890_22730 PF00989 PAS fold BA890_22735 PF00766 Electron transfer flavoprotein FAD-binding domain BA890_22735 PF01012 Electron transfer flavoprotein domain BA890_22740 PF01012 Electron transfer flavoprotein domain BA890_22750 PF12399 Branched-chain amino acid ATP-binding cassette transporter BA890_22750 PF00005 ABC transporter BA890_22775 PF00005 ABC transporter BA890_22780 PF00501 AMP-binding enzyme BA890_22780 PF14535 AMP-binding enzyme C-terminal domain BA890_22795 PF00034 Cytochrome c BA890_22805 PF12794 Mechanosensitive ion channel inner membrane domain 1 BA890_22805 PF00924 Mechanosensitive ion channel BA890_22805 PF12795 Mechanosensitive ion channel porin domain BA890_22810 PF03060 Nitronate monooxygenase BA890_22815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_22815 PF03466 LysR substrate binding domain BA890_22820 PF00497 Bacterial extracellular solute-binding proteins, family 3 BA890_22825 PF00528 Binding-protein-dependent transport system inner membrane component BA890_22830 PF00528 Binding-protein-dependent transport system inner membrane component BA890_22840 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BA890_22840 PF13378 Enolase C-terminal domain-like BA890_22850 PF01717 Cobalamin-independent synthase, Catalytic domain BA890_22850 PF08267 Cobalamin-independent synthase, N-terminal domain BA890_22860 PF01047 MarR family BA890_22870 PF00682 HMGL-like BA890_22875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BA890_22875 PF00289 Biotin carboxylase, N-terminal domain BA890_22875 PF02785 Biotin carboxylase C-terminal domain BA890_22880 PF00378 Enoyl-CoA hydratase/isomerase BA890_22885 PF01039 Carboxyl transferase domain BA890_22890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BA890_22890 PF02770 Acyl-CoA dehydrogenase, middle domain BA890_22890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BA890_22895 PF09278 MerR, DNA binding BA890_22895 PF00376 MerR family regulatory protein BA890_22900 PF00108 Thiolase, N-terminal domain BA890_22900 PF02803 Thiolase, C-terminal domain BA890_22905 PF00171 Aldehyde dehydrogenase family BA890_22910 PF02770 Acyl-CoA dehydrogenase, middle domain BA890_22910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BA890_22910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BA890_22915 PF00378 Enoyl-CoA hydratase/isomerase BA890_22925 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BA890_22925 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BA890_22935 PF13977 BetI-type transcriptional repressor, C-terminal BA890_22935 PF00440 Bacterial regulatory proteins, tetR family BA890_22940 PF00171 Aldehyde dehydrogenase family BA890_22945 PF00732 GMC oxidoreductase BA890_22945 PF05199 GMC oxidoreductase BA890_22950 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BA890_22955 PF00528 Binding-protein-dependent transport system inner membrane component BA890_22960 PF00005 ABC transporter BA890_22960 PF00571 CBS domain BA890_22965 PF16200 C-terminal region of band_7 BA890_22965 PF01145 SPFH domain / Band 7 family BA890_22975 PF03707 Bacterial signalling protein N terminal repeat BA890_22975 PF00563 EAL domain BA890_22975 PF00990 Diguanylate cyclase, GGDEF domain BA890_22975 PF13188 PAS domain BA890_22990 PF04116 Fatty acid hydroxylase superfamily BA890_22995 PF00072 Response regulator receiver domain BA890_22995 PF00196 Bacterial regulatory proteins, luxR family BA890_23000 PF03793 PASTA domain BA890_23000 PF00069 Protein kinase domain BA890_23005 PF07690 Major Facilitator Superfamily BA890_23015 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BA890_23015 PF04324 BFD-like [2Fe-2S] binding domain BA890_23015 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BA890_23015 PF07992 Pyridine nucleotide-disulphide oxidoreductase BA890_23015 PF18267 Rubredoxin NAD+ reductase C-terminal domain BA890_23025 PF01568 Molydopterin dinucleotide binding domain BA890_23025 PF00384 Molybdopterin oxidoreductase BA890_23025 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BA890_23025 PF04324 BFD-like [2Fe-2S] binding domain BA890_23030 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family BA890_23035 PF00148 Nitrogenase component 1 type Oxidoreductase BA890_23040 PF11844 Domain of unknown function (DUF3364) BA890_23040 PF00148 Nitrogenase component 1 type Oxidoreductase BA890_23050 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal BA890_23050 PF02579 Dinitrogenase iron-molybdenum cofactor BA890_23060 PF00148 Nitrogenase component 1 type Oxidoreductase BA890_23065 PF00148 Nitrogenase component 1 type Oxidoreductase BA890_23070 PF02579 Dinitrogenase iron-molybdenum cofactor BA890_23080 PF04324 BFD-like [2Fe-2S] binding domain BA890_23080 PF01592 NifU-like N terminal domain BA890_23080 PF01106 NifU-like domain BA890_23085 PF00266 Aminotransferase class-V BA890_23090 PF00682 HMGL-like BA890_23100 PF04319 NifZ domain BA890_23105 PF00639 PPIC-type PPIASE domain BA890_23115 PF00528 Binding-protein-dependent transport system inner membrane component BA890_23120 PF00005 ABC transporter BA890_23120 PF03459 TOBE domain BA890_23125 PF00892 EamA-like transporter family BA890_23135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BA890_23135 PF03466 LysR substrate binding domain BA890_23145 PF01202 Shikimate kinase BA890_23150 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BA890_23160 PF03480 Bacterial extracellular solute-binding protein, family 7 BA890_23165 PF01810 LysE type translocator BA890_23175 PF09905 DNA-binding protein VF530 BA890_23180 PF00313 'Cold-shock' DNA-binding domain BA890_23185 PF04891 NifQ BA890_23190 PF02579 Dinitrogenase iron-molybdenum cofactor BA890_23190 PF04055 Radical SAM superfamily BA890_23195 PF00158 Sigma-54 interaction domain BA890_23195 PF02954 Bacterial regulatory protein, Fis family BA890_23195 PF13185 GAF domain BA890_23200 PF13426 PAS domain BA890_23200 PF00072 Response regulator receiver domain BA890_23200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BA890_23205 PF02508 Rnf-Nqr subunit, membrane protein BA890_23210 PF04060 Putative Fe-S cluster BA890_23215 PF13237 4Fe-4S dicluster domain BA890_23215 PF13375 RnfC Barrel sandwich hybrid domain BA890_23215 PF10531 SLBB domain BA890_23215 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BA890_23220 PF03116 NQR2, RnfD, RnfE family BA890_23225 PF04205 FMN-binding domain BA890_23230 PF02508 Rnf-Nqr subunit, membrane protein BA890_23235 PF03658 RnfH family Ubiquitin BA890_23240 PF00258 Flavodoxin BA890_23250 PF01527 Transposase BA890_23270 PF00529 HlyD membrane-fusion protein of T1SS BA890_23270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion