locus-tag class description I3X05_00005 PF11638 DnaA N-terminal domain I3X05_00005 PF08299 Bacterial dnaA protein helix-turn-helix I3X05_00005 PF00308 Bacterial dnaA protein I3X05_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain I3X05_00010 PF02767 DNA polymerase III beta subunit, central domain I3X05_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain I3X05_00015 PF02463 RecF/RecN/SMC N terminal domain I3X05_00020 PF01751 Toprim domain I3X05_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_00020 PF18053 DNA gyrase B subunit insert domain I3X05_00020 PF00986 DNA gyrase B subunit, carboxyl terminus I3X05_00020 PF00204 DNA gyrase B I3X05_00025 PF00011 Hsp20/alpha crystallin family I3X05_00030 PF00155 Aminotransferase class I and II I3X05_00035 PF02092 Glycyl-tRNA synthetase beta subunit I3X05_00035 PF05746 DALR anticodon binding domain I3X05_00040 PF02091 Glycyl-tRNA synthetase alpha subunit I3X05_00045 PF01169 Uncharacterized protein family UPF0016 I3X05_00070 PF01206 Sulfurtransferase TusA I3X05_00080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_00080 PF03466 LysR substrate binding domain I3X05_00085 PF00107 Zinc-binding dehydrogenase I3X05_00085 PF08240 Alcohol dehydrogenase GroES-like domain I3X05_00090 PF02803 Thiolase, C-terminal domain I3X05_00090 PF00108 Thiolase, N-terminal domain I3X05_00095 PF00378 Enoyl-CoA hydratase/isomerase I3X05_00095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain I3X05_00095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain I3X05_00100 PF01205 Uncharacterized protein family UPF0029 I3X05_00100 PF09186 Domain of unknown function (DUF1949) I3X05_00105 PF02386 Cation transport protein I3X05_00110 PF12724 Flavodoxin domain I3X05_00170 PF03466 LysR substrate binding domain I3X05_00170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_00175 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain I3X05_00175 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain I3X05_00180 PF04380 Membrane fusogenic activity I3X05_00185 PF00873 AcrB/AcrD/AcrF family I3X05_00190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion I3X05_00195 PF00440 Bacterial regulatory proteins, tetR family I3X05_00200 PF13361 UvrD-like helicase C-terminal domain I3X05_00200 PF00580 UvrD/REP helicase N-terminal domain I3X05_00205 PF13442 Cytochrome C oxidase, cbb3-type, subunit III I3X05_00235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_00235 PF00005 ABC transporter I3X05_00240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle I3X05_00245 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_00250 PF12911 N-terminal TM domain of oligopeptide transport permease C I3X05_00250 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_00285 PF03793 PASTA domain I3X05_00285 PF00069 Protein kinase domain I3X05_00295 PF00196 Bacterial regulatory proteins, luxR family I3X05_00295 PF00072 Response regulator receiver domain I3X05_00300 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family I3X05_00300 PF00356 Bacterial regulatory proteins, lacI family I3X05_00305 PF00920 Dehydratase family I3X05_00310 PF01202 Shikimate kinase I3X05_00315 PF02447 GntP family permease I3X05_00320 PF01081 KDPG and KHG aldolase I3X05_00325 PF07690 Major Facilitator Superfamily I3X05_00340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain I3X05_00340 PF07992 Pyridine nucleotide-disulphide oxidoreductase I3X05_00345 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ I3X05_00350 PF01432 Peptidase family M3 I3X05_00355 PF01037 Lrp/AsnC ligand binding domain I3X05_00360 PF00563 EAL domain I3X05_00360 PF08448 PAS fold I3X05_00360 PF00990 Diguanylate cyclase, GGDEF domain I3X05_00365 PF04445 Putative SAM-dependent methyltransferase I3X05_00375 PF00892 EamA-like transporter family I3X05_00380 PF00582 Universal stress protein family I3X05_00385 PF00210 Ferritin-like domain I3X05_00390 PF10625 Universal stress protein B (UspB) I3X05_00400 PF08722 TnsA endonuclease N terminal I3X05_00400 PF08721 TnsA endonuclease C terminal I3X05_00410 PF01609 Transposase DDE domain I3X05_00410 PF13808 DDE_Tnp_1-associated I3X05_00435 PF03707 Bacterial signalling protein N terminal repeat I3X05_00435 PF00990 Diguanylate cyclase, GGDEF domain I3X05_00435 PF00563 EAL domain I3X05_00450 PF02646 RmuC family I3X05_00455 PF01209 ubiE/COQ5 methyltransferase family I3X05_00460 PF02036 SCP-2 sterol transfer family I3X05_00465 PF03109 ABC1 family I3X05_00470 PF02416 mttA/Hcf106 family I3X05_00475 PF02416 mttA/Hcf106 family I3X05_00480 PF00902 Sec-independent protein translocase protein (TatC) I3X05_00485 PF01026 TatD related DNase I3X05_00490 PF00490 Delta-aminolevulinic acid dehydratase I3X05_00500 PF01367 5'-3' exonuclease, C-terminal SAM fold I3X05_00500 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain I3X05_00500 PF00476 DNA polymerase family A I3X05_00500 PF01612 3'-5' exonuclease I3X05_00505 PF01926 50S ribosome-binding GTPase I3X05_00510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III I3X05_00525 PF04220 Der GTPase activator (YihI) I3X05_00530 PF10675 Protein of unknown function (DUF2489) I3X05_00535 PF04055 Radical SAM superfamily I3X05_00535 PF06969 HemN C-terminal domain I3X05_00540 PF00990 Diguanylate cyclase, GGDEF domain I3X05_00540 PF00563 EAL domain I3X05_00540 PF00360 Phytochrome region I3X05_00540 PF01590 GAF domain I3X05_00545 PF00158 Sigma-54 interaction domain I3X05_00545 PF00072 Response regulator receiver domain I3X05_00545 PF02954 Bacterial regulatory protein, Fis family I3X05_00550 PF00512 His Kinase A (phospho-acceptor) domain I3X05_00550 PF00989 PAS fold I3X05_00550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_00560 PF03951 Glutamine synthetase, beta-Grasp domain I3X05_00560 PF00120 Glutamine synthetase, catalytic domain I3X05_00565 PF00679 Elongation factor G C-terminus I3X05_00565 PF00009 Elongation factor Tu GTP binding domain I3X05_00565 PF03144 Elongation factor Tu domain 2 I3X05_00570 PF03631 Virulence factor BrkB I3X05_00575 PF02580 D-Tyr-tRNA(Tyr) deacylase I3X05_00580 PF09500 Putative thioesterase (yiiD_Cterm) I3X05_00580 PF00583 Acetyltransferase (GNAT) family I3X05_00590 PF01293 Phosphoenolpyruvate carboxykinase I3X05_00595 PF01430 Hsp33 protein I3X05_00600 PF01479 S4 domain I3X05_00605 PF11356 Type II secretion system protein C I3X05_00610 PF03958 Bacterial type II/III secretion system short domain I3X05_00610 PF00263 Bacterial type II and III secretion system protein I3X05_00615 PF00437 Type II/IV secretion system protein I3X05_00620 PF00482 Type II secretion system (T2SS), protein F I3X05_00625 PF07963 Prokaryotic N-terminal methylation motif I3X05_00625 PF08334 Type II secretion system (T2SS), protein G I3X05_00630 PF12019 Type II transport protein GspH I3X05_00635 PF07963 Prokaryotic N-terminal methylation motif I3X05_00635 PF02501 Type II secretion system (T2SS), protein I I3X05_00640 PF07963 Prokaryotic N-terminal methylation motif I3X05_00640 PF11612 Type II secretion system (T2SS), protein J I3X05_00645 PF03934 Type II secretion system (T2SS), protein K I3X05_00650 PF12693 GspL periplasmic domain I3X05_00650 PF05134 Type II secretion system (T2SS), protein L I3X05_00655 PF04612 Type II secretion system (T2SS), protein M I3X05_00660 PF01203 Type II secretion system (T2SS), protein N I3X05_00665 PF00459 Inositol monophosphatase family I3X05_00670 PF00293 NUDIX domain I3X05_00675 PF01521 Iron-sulphur cluster biosynthesis I3X05_00675 PF01106 NifU-like domain I3X05_00680 PF00156 Phosphoribosyl transferase domain I3X05_00685 PF00561 alpha/beta hydrolase fold I3X05_00695 PF17674 HHH domain I3X05_00695 PF00575 S1 RNA binding domain I3X05_00695 PF09371 Tex-like protein N-terminal domain I3X05_00695 PF16921 Tex protein YqgF-like domain I3X05_00700 PF01272 Transcription elongation factor, GreA/GreB, C-term I3X05_00700 PF03449 Transcription elongation factor, N-terminal I3X05_00715 PF00005 ABC transporter I3X05_00720 PF02653 Branched-chain amino acid transport system / permease component I3X05_00725 PF00933 Glycosyl hydrolase family 3 N terminal domain I3X05_00725 PF01915 Glycosyl hydrolase family 3 C-terminal domain I3X05_00735 PF00486 Transcriptional regulatory protein, C terminal I3X05_00735 PF00072 Response regulator receiver domain I3X05_00740 PF00512 His Kinase A (phospho-acceptor) domain I3X05_00740 PF00672 HAMP domain I3X05_00740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_00745 PF00860 Permease family I3X05_00750 PF00271 Helicase conserved C-terminal domain I3X05_00750 PF17191 RecG wedge domain I3X05_00750 PF00270 DEAD/DEAH box helicase I3X05_00755 PF12105 SpoU, rRNA methylase, C-terminal I3X05_00755 PF00588 SpoU rRNA Methylase family I3X05_00760 PF04607 Region found in RelA / SpoT proteins I3X05_00760 PF13291 ACT domain I3X05_00760 PF02824 TGS domain I3X05_00765 PF01192 RNA polymerase Rpb6 I3X05_00770 PF00625 Guanylate kinase I3X05_00785 PF02472 Biopolymer transport protein ExbD/TolR I3X05_00790 PF01618 MotA/TolQ/ExbB proton channel family I3X05_00795 PF01618 MotA/TolQ/ExbB proton channel family I3X05_00805 PF07715 TonB-dependent Receptor Plug Domain I3X05_00805 PF00593 TonB dependent receptor I3X05_00810 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_00815 PF12911 N-terminal TM domain of oligopeptide transport permease C I3X05_00815 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_00820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle I3X05_00825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_00825 PF00005 ABC transporter I3X05_00830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_00830 PF00005 ABC transporter I3X05_00860 PF03755 YicC-like family, N-terminal region I3X05_00860 PF08340 Domain of unknown function (DUF1732) I3X05_00865 PF01138 3' exoribonuclease family, domain 1 I3X05_00865 PF03725 3' exoribonuclease family, domain 2 I3X05_00870 PF00156 Phosphoribosyl transferase domain I3X05_00875 PF03279 Bacterial lipid A biosynthesis acyltransferase I3X05_00880 PF00440 Bacterial regulatory proteins, tetR family I3X05_00885 PF04127 DNA / pantothenate metabolism flavoprotein I3X05_00885 PF02441 Flavoprotein I3X05_00890 PF17200 Single Cache domain 2 I3X05_00890 PF00672 HAMP domain I3X05_00890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_00895 PF04002 RadC-like JAB domain I3X05_00900 PF00830 Ribosomal L28 family I3X05_00905 PF00471 Ribosomal protein L33 I3X05_00915 PF06827 Zinc finger found in FPG and IleRS I3X05_00915 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain I3X05_00915 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain I3X05_00925 PF01467 Cytidylyltransferase-like I3X05_00930 PF00534 Glycosyl transferases group 1 I3X05_00930 PF13439 Glycosyltransferase Family 4 I3X05_00935 PF00535 Glycosyl transferase family 2 I3X05_00940 PF01075 Glycosyltransferase family 9 (heptosyltransferase) I3X05_00945 PF01219 Prokaryotic diacylglycerol kinase I3X05_00955 PF11893 Domain of unknown function (DUF3413) I3X05_00955 PF00884 Sulfatase I3X05_00960 PF00535 Glycosyl transferase family 2 I3X05_00965 PF16363 GDP-mannose 4,6 dehydratase I3X05_00970 PF00483 Nucleotidyl transferase I3X05_00975 PF04321 RmlD substrate binding domain I3X05_00980 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase I3X05_00985 PF05523 WxcM-like, C-terminal I3X05_00990 PF00132 Bacterial transferase hexapeptide (six repeats) I3X05_00995 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family I3X05_01030 PF04030 D-arabinono-1,4-lactone oxidase I3X05_01030 PF01565 FAD binding domain I3X05_01035 PF00106 short chain dehydrogenase I3X05_01045 PF00534 Glycosyl transferases group 1 I3X05_01045 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) I3X05_01050 PF01075 Glycosyltransferase family 9 (heptosyltransferase) I3X05_01060 PF03279 Bacterial lipid A biosynthesis acyltransferase I3X05_01065 PF01370 NAD dependent epimerase/dehydratase family I3X05_01080 PF00082 Subtilase family I3X05_01105 PF10531 SLBB domain I3X05_01105 PF02563 Polysaccharide biosynthesis/export protein I3X05_01105 PF18412 Outer-membrane lipoprotein Wza C-terminal domain I3X05_01115 PF01451 Low molecular weight phosphotyrosine protein phosphatase I3X05_01120 PF13614 AAA domain I3X05_01120 PF02706 Chain length determinant protein I3X05_01120 PF13807 G-rich domain on putative tyrosine kinase I3X05_01125 PF02350 UDP-N-acetylglucosamine 2-epimerase I3X05_01130 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain I3X05_01130 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain I3X05_01130 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain I3X05_01140 PF12464 Maltose acetyltransferase I3X05_01140 PF00132 Bacterial transferase hexapeptide (six repeats) I3X05_01160 PF02719 Polysaccharide biosynthesis protein I3X05_01160 PF08485 Polysaccharide biosynthesis protein C-terminal I3X05_01165 PF01370 NAD dependent epimerase/dehydratase family I3X05_01170 PF02350 UDP-N-acetylglucosamine 2-epimerase I3X05_01185 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family I3X05_01190 PF02397 Bacterial sugar transferase I3X05_01195 PF02719 Polysaccharide biosynthesis protein I3X05_01200 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain I3X05_01200 PF10996 Beta-Casp domain I3X05_01200 PF00753 Metallo-beta-lactamase superfamily I3X05_01230 PF00271 Helicase conserved C-terminal domain I3X05_01230 PF04434 SWIM zinc finger I3X05_01230 PF00176 SNF2 family N-terminal domain I3X05_01235 PF01909 Nucleotidyltransferase domain I3X05_01245 PF16363 GDP-mannose 4,6 dehydratase I3X05_01250 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain I3X05_01250 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain I3X05_01250 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain I3X05_01255 PF00121 Triosephosphate isomerase I3X05_01275 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded I3X05_01280 PF06005 Cell division protein ZapB I3X05_01285 PF03737 Aldolase/RraA I3X05_01290 PF01040 UbiA prenyltransferase family I3X05_01295 PF10431 C-terminal, D2-small domain, of ClpB protein I3X05_01295 PF00004 ATPase family associated with various cellular activities (AAA) I3X05_01295 PF07724 AAA domain (Cdc48 subfamily) I3X05_01300 PF00227 Proteasome subunit I3X05_01310 PF00356 Bacterial regulatory proteins, lacI family I3X05_01315 PF18319 PriA DNA helicase Cys-rich region (CRR) domain I3X05_01315 PF18074 Primosomal protein N C-terminal domain I3X05_01315 PF17764 3′ DNA-binding domain (3′BD) I3X05_01315 PF00271 Helicase conserved C-terminal domain I3X05_01315 PF00270 DEAD/DEAH box helicase I3X05_01320 PF01197 Ribosomal protein L31 I3X05_01325 PF03949 Malic enzyme, NAD binding domain I3X05_01325 PF00390 Malic enzyme, N-terminal domain I3X05_01330 PF01340 Met Apo-repressor, MetJ I3X05_01335 PF01053 Cys/Met metabolism PLP-dependent enzyme I3X05_01340 PF00742 Homoserine dehydrogenase I3X05_01340 PF03447 Homoserine dehydrogenase, NAD binding domain I3X05_01340 PF00696 Amino acid kinase family I3X05_01345 PF02219 Methylenetetrahydrofolate reductase I3X05_01355 PF00311 Phosphoenolpyruvate carboxylase I3X05_01360 PF07687 Peptidase dimerisation domain I3X05_01360 PF01546 Peptidase family M20/M25/M40 I3X05_01365 PF02774 Semialdehyde dehydrogenase, dimerisation domain I3X05_01365 PF01118 Semialdehyde dehydrogenase, NAD binding domain I3X05_01370 PF00696 Amino acid kinase family I3X05_01375 PF00764 Arginosuccinate synthase I3X05_01380 PF00206 Lyase I3X05_01380 PF14698 Argininosuccinate lyase C-terminal I3X05_01380 PF00583 Acetyltransferase (GNAT) family I3X05_01390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_01390 PF03466 LysR substrate binding domain I3X05_01395 PF17092 Penicillin-binding protein OB-like domain I3X05_01395 PF00912 Transglycosylase I3X05_01395 PF00905 Penicillin binding protein transpeptidase domain I3X05_01420 PF03958 Bacterial type II/III secretion system short domain I3X05_01420 PF07660 Secretin and TonB N terminus short domain I3X05_01420 PF11741 AMIN domain I3X05_01420 PF00263 Bacterial type II and III secretion system protein I3X05_01425 PF01202 Shikimate kinase I3X05_01430 PF01761 3-dehydroquinate synthase I3X05_01440 PF02086 D12 class N6 adenine-specific DNA methyltransferase I3X05_01445 PF00834 Ribulose-phosphate 3 epimerase family I3X05_01450 PF01250 Ribosomal protein S6 I3X05_01460 PF01084 Ribosomal protein S18 I3X05_01465 PF03948 Ribosomal protein L9, C-terminal domain I3X05_01465 PF01281 Ribosomal protein L9, N-terminal domain I3X05_01475 PF03796 DnaB-like helicase C terminal domain I3X05_01475 PF00772 DnaB-like helicase N terminal domain I3X05_01480 PF01168 Alanine racemase, N-terminal domain I3X05_01480 PF00842 Alanine racemase, C-terminal domain I3X05_01490 PF01894 Uncharacterised protein family UPF0047 I3X05_01495 PF00342 Phosphoglucose isomerase I3X05_01505 PF01475 Ferric uptake regulator family I3X05_01510 PF01207 Dihydrouridine synthase (Dus) I3X05_01530 PF00667 FAD binding domain I3X05_01530 PF00175 Oxidoreductase NAD-binding domain I3X05_01530 PF00258 Flavodoxin I3X05_01535 PF01077 Nitrite and sulphite reductase 4Fe-4S domain I3X05_01535 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain I3X05_01540 PF01507 Phosphoadenosine phosphosulfate reductase family I3X05_01615 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) I3X05_01645 PF01316 Arginine repressor, DNA binding domain I3X05_01645 PF02863 Arginine repressor, C-terminal domain I3X05_01650 PF00056 lactate/malate dehydrogenase, NAD binding domain I3X05_01650 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain I3X05_01660 PF00348 Polyprenyl synthetase I3X05_01665 PF00829 Ribosomal prokaryotic L21 protein I3X05_01670 PF01016 Ribosomal L27 protein I3X05_01675 PF01018 GTP1/OBG I3X05_01675 PF01926 50S ribosome-binding GTPase I3X05_01680 PF06738 Putative threonine/serine exporter I3X05_01685 PF12821 Threonine/Serine exporter, ThrE I3X05_01690 PF00186 Dihydrofolate reductase I3X05_01695 PF00149 Calcineurin-like phosphoesterase I3X05_01700 PF04379 ApaG domain I3X05_01705 PF00398 Ribosomal RNA adenine dimethylase I3X05_01710 PF04166 Pyridoxal phosphate biosynthetic protein PdxA I3X05_01715 PF09312 SurA N-terminal domain I3X05_01715 PF00639 PPIC-type PPIASE domain I3X05_01720 PF04453 LPS transport system D I3X05_01720 PF03968 OstA-like protein I3X05_01725 PF00226 DnaJ domain I3X05_01725 PF05099 Tellurite resistance protein TerB I3X05_01735 PF00694 Aconitase C-terminal domain I3X05_01740 PF00330 Aconitase family (aconitate hydratase) I3X05_01745 PF00180 Isocitrate/isopropylmalate dehydrogenase I3X05_01750 PF00682 HMGL-like I3X05_01750 PF08502 LeuA allosteric (dimerisation) domain I3X05_01755 PF13977 BetI-type transcriptional repressor, C-terminal I3X05_01755 PF00440 Bacterial regulatory proteins, tetR family I3X05_01760 PF01569 PAP2 superfamily I3X05_01770 PF03466 LysR substrate binding domain I3X05_01770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_01775 PF00501 AMP-binding enzyme I3X05_01780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain I3X05_01780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain I3X05_01780 PF00205 Thiamine pyrophosphate enzyme, central domain I3X05_01785 PF10369 Small subunit of acetolactate synthase I3X05_01790 PF07694 5TMR of 5TMR-LYT I3X05_01790 PF00990 Diguanylate cyclase, GGDEF domain I3X05_01795 PF07729 FCD domain I3X05_01795 PF00392 Bacterial regulatory proteins, gntR family I3X05_01800 PF02887 Pyruvate kinase, alpha/beta domain I3X05_01800 PF00224 Pyruvate kinase, barrel domain I3X05_01805 PF00455 DeoR C terminal sensor domain I3X05_01805 PF08220 DeoR-like helix-turn-helix domain I3X05_01810 PF01380 SIS domain I3X05_01815 PF05068 Mannitol repressor I3X05_01820 PF08125 Mannitol dehydrogenase C-terminal domain I3X05_01820 PF01232 Mannitol dehydrogenase Rossmann domain I3X05_01825 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 I3X05_01825 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit I3X05_01825 PF02378 Phosphotransferase system, EIIC I3X05_01830 PF03480 Bacterial extracellular solute-binding protein, family 7 I3X05_01870 PF04546 Sigma-70, non-essential region I3X05_01870 PF04542 Sigma-70 region 2 I3X05_01870 PF04539 Sigma-70 region 3 I3X05_01870 PF03979 Sigma-70 factor, region 1.1 I3X05_01870 PF04545 Sigma-70, region 4 I3X05_01870 PF00140 Sigma-70 factor, region 1.2 I3X05_01875 PF10410 DnaB-helicase binding domain of primase I3X05_01875 PF08278 DNA primase DnaG DnaB-binding I3X05_01875 PF08275 DNA primase catalytic core, N-terminal domain I3X05_01875 PF01807 CHC2 zinc finger I3X05_01880 PF09424 Yqey-like protein I3X05_01885 PF01165 Ribosomal protein S21 I3X05_01890 PF00814 Glycoprotease family I3X05_01900 PF02660 Glycerol-3-phosphate acyltransferase I3X05_01905 PF02152 Dihydroneopterin aldolase I3X05_01910 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) I3X05_01915 PF02673 Bacitracin resistance protein BacA I3X05_01920 PF01966 HD domain I3X05_01920 PF12627 Probable RNA and SrmB- binding site of polymerase A I3X05_01920 PF01743 Poly A polymerase head domain I3X05_01925 PF01471 Putative peptidoglycan binding domain I3X05_01925 PF13401 AAA domain I3X05_01930 PF08239 Bacterial SH3 domain I3X05_01935 PF01384 Phosphate transporter family I3X05_01940 PF01865 Protein of unknown function DUF47 I3X05_01945 PF01928 CYTH domain I3X05_01950 PF07885 Ion channel I3X05_01955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_01955 PF02743 Cache domain I3X05_01955 PF00672 HAMP domain I3X05_01960 PF03710 Glutamate-ammonia ligase adenylyltransferase I3X05_01960 PF08335 GlnD PII-uridylyltransferase I3X05_01965 PF01467 Cytidylyltransferase-like I3X05_01965 PF00294 pfkB family carbohydrate kinase I3X05_01970 PF02321 Outer membrane efflux protein I3X05_01975 PF00293 NUDIX domain I3X05_01980 PF06853 Protein of unknown function (DUF1249) I3X05_01985 PF00149 Calcineurin-like phosphoesterase I3X05_01990 PF05728 Uncharacterised protein family (UPF0227) I3X05_01995 PF01751 Toprim domain I3X05_01995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_01995 PF00986 DNA gyrase B subunit, carboxyl terminus I3X05_01995 PF00204 DNA gyrase B I3X05_02000 PF03989 DNA gyrase C-terminal domain, beta-propeller I3X05_02000 PF00521 DNA gyrase/topoisomerase IV, subunit A I3X05_02005 PF13180 PDZ domain I3X05_02010 PF00595 PDZ domain I3X05_02015 PF06295 Protein of unknown function (DUF1043) I3X05_02020 PF03969 AFG1-like ATPase I3X05_02025 PF00572 Ribosomal protein L13 I3X05_02030 PF00380 Ribosomal protein S9/S16 I3X05_02035 PF00355 Rieske [2Fe-2S] domain I3X05_02035 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal I3X05_02040 PF00032 Cytochrome b(C-terminal)/b6/petD I3X05_02040 PF00033 Cytochrome b/b6/petB I3X05_02045 PF02167 Cytochrome C1 family I3X05_02050 PF00043 Glutathione S-transferase, C-terminal domain I3X05_02050 PF02798 Glutathione S-transferase, N-terminal domain I3X05_02055 PF04386 Stringent starvation protein B I3X05_02060 PF04972 BON domain I3X05_02065 PF13580 SIS domain I3X05_02070 PF02021 Uncharacterised protein family UPF0102 I3X05_02075 PF04348 LppC putative lipoprotein I3X05_02080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases I3X05_02090 PF01795 MraW methylase family I3X05_02095 PF04999 Cell division protein FtsL I3X05_02100 PF00905 Penicillin binding protein transpeptidase domain I3X05_02100 PF03717 Penicillin-binding Protein dimerisation domain I3X05_02105 PF01225 Mur ligase family, catalytic domain I3X05_02105 PF08245 Mur ligase middle domain I3X05_02105 PF02875 Mur ligase family, glutamate ligase domain I3X05_02110 PF08245 Mur ligase middle domain I3X05_02110 PF02875 Mur ligase family, glutamate ligase domain I3X05_02110 PF01225 Mur ligase family, catalytic domain I3X05_02115 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 I3X05_02115 PF00953 Glycosyl transferase family 4 I3X05_02120 PF02875 Mur ligase family, glutamate ligase domain I3X05_02120 PF08245 Mur ligase middle domain I3X05_02125 PF01098 Cell cycle protein I3X05_02130 PF03033 Glycosyltransferase family 28 N-terminal domain I3X05_02130 PF04101 Glycosyltransferase family 28 C-terminal domain I3X05_02135 PF01225 Mur ligase family, catalytic domain I3X05_02135 PF02875 Mur ligase family, glutamate ligase domain I3X05_02135 PF08245 Mur ligase middle domain I3X05_02140 PF03799 Cell division protein FtsQ I3X05_02140 PF08478 POTRA domain, FtsQ-type I3X05_02145 PF02491 SHS2 domain inserted in FTSA I3X05_02150 PF12327 FtsZ family, C-terminal domain I3X05_02150 PF00091 Tubulin/FtsZ family, GTPase domain I3X05_02155 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase I3X05_02160 PF07517 SecA DEAD-like domain I3X05_02160 PF02810 SEC-C motif I3X05_02160 PF01043 SecA preprotein cross-linking domain I3X05_02160 PF07516 SecA Wing and Scaffold domain I3X05_02165 PF00293 NUDIX domain I3X05_02170 PF01113 Dihydrodipicolinate reductase, N-terminus I3X05_02170 PF05173 Dihydrodipicolinate reductase, C-terminus I3X05_02175 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain I3X05_02175 PF00117 Glutamine amidotransferase class-I I3X05_02180 PF02142 MGS-like domain I3X05_02180 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain I3X05_02180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain I3X05_02185 PF01925 Sulfite exporter TauE/SafE I3X05_02190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_02190 PF03466 LysR substrate binding domain I3X05_02195 PF03458 UPF0126 domain I3X05_02200 PF01497 Periplasmic binding protein I3X05_02205 PF03186 CobD/Cbib protein I3X05_02210 PF01048 Phosphorylase superfamily I3X05_02220 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster I3X05_02220 PF07992 Pyridine nucleotide-disulphide oxidoreductase I3X05_02225 PF04898 Glutamate synthase central domain I3X05_02225 PF01645 Conserved region in glutamate synthase I3X05_02225 PF00310 Glutamine amidotransferases class-II I3X05_02225 PF01493 GXGXG motif I3X05_02230 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster I3X05_02230 PF07992 Pyridine nucleotide-disulphide oxidoreductase I3X05_02235 PF01493 GXGXG motif I3X05_02235 PF01645 Conserved region in glutamate synthase I3X05_02235 PF04898 Glutamate synthase central domain I3X05_02235 PF00310 Glutamine amidotransferases class-II I3X05_02240 PF16199 Radical_SAM C-terminal domain I3X05_02240 PF04055 Radical SAM superfamily I3X05_02245 PF00360 Phytochrome region I3X05_02245 PF01590 GAF domain I3X05_02245 PF00563 EAL domain I3X05_02245 PF00990 Diguanylate cyclase, GGDEF domain I3X05_02250 PF00072 Response regulator receiver domain I3X05_02250 PF18415 Histidine kinase receptor ArcB trans-membrane domain I3X05_02250 PF01627 Hpt domain I3X05_02250 PF00512 His Kinase A (phospho-acceptor) domain I3X05_02250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_02250 PF00989 PAS fold I3X05_02260 PF00486 Transcriptional regulatory protein, C terminal I3X05_02260 PF00072 Response regulator receiver domain I3X05_02270 PF03737 Aldolase/RraA I3X05_02280 PF01842 ACT domain I3X05_02280 PF13840 ACT domain I3X05_02280 PF00742 Homoserine dehydrogenase I3X05_02280 PF00696 Amino acid kinase family I3X05_02280 PF03447 Homoserine dehydrogenase, NAD binding domain I3X05_02285 PF00288 GHMP kinases N terminal domain I3X05_02285 PF08544 GHMP kinases C terminal I3X05_02290 PF14821 Threonine synthase N terminus I3X05_02290 PF00291 Pyridoxal-phosphate dependent enzyme I3X05_02295 PF01228 Glycine radical I3X05_02300 PF01261 Xylose isomerase-like TIM barrel I3X05_02305 PF03167 Uracil DNA glycosylase superfamily I3X05_02320 PF01235 Sodium:alanine symporter family I3X05_02325 PF03883 Peroxide stress protein YaaA I3X05_02330 PF00271 Helicase conserved C-terminal domain I3X05_02330 PF00270 DEAD/DEAH box helicase I3X05_02335 PF05175 Methyltransferase small domain I3X05_02340 PF05525 Branched-chain amino acid transport protein I3X05_02345 PF00258 Flavodoxin I3X05_02350 PF02899 Phage integrase, N-terminal SAM-like domain I3X05_02350 PF00589 Phage integrase family I3X05_02355 PF10411 Disulfide bond isomerase protein N-terminus I3X05_02355 PF13098 Thioredoxin-like domain I3X05_02360 PF17768 RecJ OB domain I3X05_02360 PF02272 DHHA1 domain I3X05_02360 PF01368 DHH family I3X05_02370 PF00152 tRNA synthetases class II (D, K and N) I3X05_02370 PF01336 OB-fold nucleic acid binding domain I3X05_02375 PF00158 Sigma-54 interaction domain I3X05_02375 PF02954 Bacterial regulatory protein, Fis family I3X05_02375 PF00072 Response regulator receiver domain I3X05_02385 PF00248 Aldo/keto reductase family I3X05_02395 PF02976 DNA mismatch repair enzyme MutH I3X05_02400 PF00293 NUDIX domain I3X05_02405 PF01590 GAF domain I3X05_02405 PF00391 PEP-utilising enzyme, mobile domain I3X05_02405 PF05524 PEP-utilising enzyme, N-terminal I3X05_02405 PF02896 PEP-utilising enzyme, TIM barrel domain I3X05_02410 PF01925 Sulfite exporter TauE/SafE I3X05_02415 PF01790 Prolipoprotein diacylglyceryl transferase I3X05_02425 PF00303 Thymidylate synthase I3X05_02440 PF01381 Helix-turn-helix I3X05_02450 PF07804 HipA-like C-terminal domain I3X05_02450 PF13657 HipA N-terminal domain I3X05_02480 PF13438 Domain of unknown function (DUF4113) I3X05_02480 PF00817 impB/mucB/samB family I3X05_02480 PF11799 impB/mucB/samB family C-terminal domain I3X05_02480 PF11798 IMS family HHH motif I3X05_02485 PF00717 Peptidase S24-like I3X05_02495 PF13538 UvrD-like helicase C-terminal domain I3X05_02495 PF14490 Helix-hairpin-helix containing domain I3X05_02495 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain I3X05_02515 PF00589 Phage integrase family I3X05_02515 PF02899 Phage integrase, N-terminal SAM-like domain I3X05_02530 PF02690 Na+/Pi-cotransporter I3X05_02535 PF03466 LysR substrate binding domain I3X05_02535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_02540 PF01022 Bacterial regulatory protein, arsR family I3X05_02545 PF01649 Ribosomal protein S20 I3X05_02550 PF03023 Lipid II flippase MurJ I3X05_02555 PF01687 Riboflavin kinase I3X05_02555 PF06574 FAD synthetase I3X05_02560 PF00133 tRNA synthetases class I (I, L, M and V) I3X05_02560 PF08264 Anticodon-binding domain of tRNA I3X05_02560 PF06827 Zinc finger found in FPG and IleRS I3X05_02565 PF01252 Signal peptidase (SPase) II I3X05_02570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase I3X05_02575 PF02401 LytB protein I3X05_02580 PF04397 LytTr DNA-binding domain I3X05_02580 PF00072 Response regulator receiver domain I3X05_02585 PF07694 5TMR of 5TMR-LYT I3X05_02585 PF06580 Histidine kinase I3X05_02590 PF02554 Carbon starvation protein CstA I3X05_02600 PF03702 Anhydro-N-acetylmuramic acid kinase I3X05_02605 PF00933 Glycosyl hydrolase family 3 N terminal domain I3X05_02610 PF00793 DAHP synthetase I family I3X05_02615 PF02153 Prephenate dehydrogenase I3X05_02615 PF01817 Chorismate mutase type II I3X05_02620 PF01551 Peptidase family M23 I3X05_02620 PF04225 Opacity-associated protein A LysM-like domain I3X05_02625 PF07238 PilZ domain I3X05_02630 PF00005 ABC transporter I3X05_02630 PF12848 ABC transporter I3X05_02635 PF01464 Transglycosylase SLT domain I3X05_02635 PF14718 Soluble lytic murein transglycosylase L domain I3X05_02640 PF01371 Trp repressor protein I3X05_02645 PF01931 Protein of unknown function DUF84 I3X05_02650 PF01817 Chorismate mutase type II I3X05_02650 PF00800 Prephenate dehydratase I3X05_02655 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein I3X05_02660 PF13525 Outer membrane lipoprotein I3X05_02665 PF00849 RNA pseudouridylate synthase I3X05_02665 PF01479 S4 domain I3X05_02670 PF02578 Multi-copper polyphenol oxidoreductase laccase I3X05_02675 PF17871 AAA lid domain I3X05_02675 PF00004 ATPase family associated with various cellular activities (AAA) I3X05_02675 PF07724 AAA domain (Cdc48 subfamily) I3X05_02675 PF02861 Clp amino terminal domain, pathogenicity island component I3X05_02675 PF10431 C-terminal, D2-small domain, of ClpB protein I3X05_02730 PF13358 DDE superfamily endonuclease I3X05_02735 PF03411 Penicillin-insensitive murein endopeptidase I3X05_02740 PF00037 4Fe-4S binding domain I3X05_02745 PF16325 Peptidase family U32 C-terminal domain I3X05_02745 PF01136 Peptidase family U32 I3X05_02750 PF04381 Putative exonuclease, RdgC I3X05_02755 PF00486 Transcriptional regulatory protein, C terminal I3X05_02755 PF00072 Response regulator receiver domain I3X05_02760 PF00512 His Kinase A (phospho-acceptor) domain I3X05_02760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_02760 PF00989 PAS fold I3X05_02760 PF11808 Phosphate regulon sensor protein PhoR I3X05_02765 PF12849 PBP superfamily domain I3X05_02770 PF02541 Ppx/GppA phosphatase family I3X05_02775 PF17941 Polyphosphate kinase C-terminal domain 1 I3X05_02775 PF13089 Polyphosphate kinase N-terminal domain I3X05_02775 PF13090 Polyphosphate kinase C-terminal domain 2 I3X05_02775 PF02503 Polyphosphate kinase middle domain I3X05_02780 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_02785 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_02790 PF00005 ABC transporter I3X05_02795 PF01895 PhoU domain I3X05_02800 PF03976 Polyphosphate kinase 2 (PPK2) I3X05_02805 PF03932 CutC family I3X05_02810 PF00578 AhpC/TSA family I3X05_02810 PF10417 C-terminal domain of 1-Cys peroxiredoxin I3X05_02815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_02815 PF03466 LysR substrate binding domain I3X05_02820 PF01274 Malate synthase I3X05_02825 PF00463 Isocitrate lyase family I3X05_02830 PF00571 CBS domain I3X05_02840 PF02547 Queuosine biosynthesis protein I3X05_02845 PF01702 Queuine tRNA-ribosyltransferase I3X05_02850 PF02699 Preprotein translocase subunit I3X05_02855 PF07549 SecD/SecF GG Motif I3X05_02855 PF13721 SecD export protein N-terminal TM region I3X05_02855 PF02355 Protein export membrane protein I3X05_02860 PF02355 Protein export membrane protein I3X05_02860 PF07549 SecD/SecF GG Motif I3X05_02865 PF00459 Inositol monophosphatase family I3X05_02870 PF00588 SpoU rRNA Methylase family I3X05_02875 PF02082 Transcriptional regulator I3X05_02880 PF00266 Aminotransferase class-V I3X05_02885 PF01592 NifU-like N terminal domain I3X05_02890 PF01521 Iron-sulphur cluster biosynthesis I3X05_02895 PF07743 HSCB C-terminal oligomerisation domain I3X05_02895 PF00226 DnaJ domain I3X05_02900 PF00012 Hsp70 protein I3X05_02905 PF00111 2Fe-2S iron-sulfur cluster binding domain I3X05_02910 PF04384 Iron-sulphur cluster assembly I3X05_02915 PF12404 Peptidase I3X05_02915 PF00883 Cytosol aminopeptidase family, catalytic domain I3X05_02920 PF00334 Nucleoside diphosphate kinase I3X05_02925 PF04055 Radical SAM superfamily I3X05_02930 PF13464 Domain of unknown function (DUF4115) I3X05_02935 PF04551 GcpE protein I3X05_02940 PF13393 Histidyl-tRNA synthetase I3X05_02940 PF03129 Anticodon binding domain I3X05_02945 PF09976 Tetratricopeptide repeat-like domain I3X05_02950 PF13360 PQQ-like domain I3X05_02955 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal I3X05_02955 PF01926 50S ribosome-binding GTPase I3X05_02960 PF13185 GAF domain I3X05_02960 PF00990 Diguanylate cyclase, GGDEF domain I3X05_02970 PF02601 Exonuclease VII, large subunit I3X05_02970 PF13742 OB-fold nucleic acid binding domain I3X05_02975 PF00478 IMP dehydrogenase / GMP reductase domain I3X05_02975 PF00571 CBS domain I3X05_02980 PF00958 GMP synthase C terminal domain I3X05_02980 PF02540 NAD synthase I3X05_02980 PF00117 Glutamine amidotransferase class-I I3X05_02995 PF00004 ATPase family associated with various cellular activities (AAA) I3X05_02995 PF01434 Peptidase family M41 I3X05_02995 PF17862 AAA+ lid domain I3X05_03000 PF13538 UvrD-like helicase C-terminal domain I3X05_03035 PF00704 Glycosyl hydrolases family 18 I3X05_03035 PF06483 Chitinase C I3X05_03040 PF01184 GPR1/FUN34/yaaH family I3X05_03045 PF01235 Sodium:alanine symporter family I3X05_03050 PF01266 FAD dependent oxidoreductase I3X05_03055 PF03466 LysR substrate binding domain I3X05_03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_03060 PF07885 Ion channel I3X05_03065 PF09335 SNARE associated Golgi protein I3X05_03070 PF03481 Putative GTP-binding controlling metal-binding I3X05_03070 PF01300 Telomere recombination I3X05_03085 PF00892 EamA-like transporter family I3X05_03120 PF13007 Transposase C of IS166 homeodomain I3X05_03120 PF03050 Transposase IS66 family I3X05_03120 PF13005 zinc-finger binding domain of transposase IS66 I3X05_03120 PF13817 IS66 C-terminal element I3X05_03170 PF01668 SmpB protein I3X05_03175 PF03364 Polyketide cyclase / dehydrase and lipid transport I3X05_03180 PF03658 RnfH family Ubiquitin I3X05_03185 PF04355 SmpA / OmlA family I3X05_03190 PF02463 RecF/RecN/SMC N terminal domain I3X05_03195 PF01513 ATP-NAD kinase I3X05_03200 PF01025 GrpE I3X05_03205 PF00375 Sodium:dicarboxylate symporter family I3X05_03220 PF01297 Zinc-uptake complex component A periplasmic I3X05_03230 PF00012 Hsp70 protein I3X05_03235 PF00226 DnaJ domain I3X05_03235 PF01556 DnaJ C terminal domain I3X05_03235 PF00684 DnaJ central domain I3X05_03240 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor I3X05_03240 PF07963 Prokaryotic N-terminal methylation motif I3X05_03265 PF03806 AbgT putative transporter family I3X05_03270 PF00756 Putative esterase I3X05_03275 PF08240 Alcohol dehydrogenase GroES-like domain I3X05_03275 PF00107 Zinc-binding dehydrogenase I3X05_03280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_03280 PF03466 LysR substrate binding domain I3X05_03285 PF14437 MafB19-like deaminase I3X05_03295 PF00497 Bacterial extracellular solute-binding proteins, family 3 I3X05_03295 PF01464 Transglycosylase SLT domain I3X05_03300 PF02769 AIR synthase related protein, C-terminal domain I3X05_03300 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal I3X05_03300 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain I3X05_03320 PF01546 Peptidase family M20/M25/M40 I3X05_03320 PF07687 Peptidase dimerisation domain I3X05_03325 PF00860 Permease family I3X05_03330 PF00156 Phosphoribosyl transferase domain I3X05_03335 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) I3X05_03340 PF07417 Sigma factor-binding transcriptional regulator Crl I3X05_03345 PF01472 PUA domain I3X05_03345 PF00696 Amino acid kinase family I3X05_03350 PF00171 Aldehyde dehydrogenase family I3X05_03355 PF03477 ATP cone domain I3X05_03360 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region I3X05_03360 PF01872 RibD C-terminal domain I3X05_03365 PF00677 Lumazine binding domain I3X05_03370 PF00925 GTP cyclohydrolase II I3X05_03370 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase I3X05_03375 PF00885 6,7-dimethyl-8-ribityllumazine synthase I3X05_03380 PF01029 NusB family I3X05_03385 PF00586 AIR synthase related protein, N-terminal domain I3X05_03385 PF02769 AIR synthase related protein, C-terminal domain I3X05_03390 PF04608 Phosphatidylglycerophosphatase A I3X05_03395 PF02780 Transketolase, C-terminal domain I3X05_03395 PF02779 Transketolase, pyrimidine binding domain I3X05_03395 PF13292 1-deoxy-D-xylulose-5-phosphate synthase I3X05_03400 PF00348 Polyprenyl synthetase I3X05_03405 PF02609 Exonuclease VII small subunit I3X05_03415 PF01618 MotA/TolQ/ExbB proton channel family I3X05_03420 PF00691 OmpA family I3X05_03420 PF13677 Membrane MotB of proton-channel complex MotA/MotB I3X05_03425 PF02926 THUMP domain I3X05_03425 PF02568 Thiamine biosynthesis protein (ThiI) I3X05_03430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_03430 PF03466 LysR substrate binding domain I3X05_03440 PF04241 Protein of unknown function (DUF423) I3X05_03445 PF18125 RlmM ferredoxin-like domain I3X05_03445 PF01728 FtsJ-like methyltransferase I3X05_03450 PF01223 DNA/RNA non-specific endonuclease I3X05_03455 PF01367 5'-3' exonuclease, C-terminal SAM fold I3X05_03455 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain I3X05_03460 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases I3X05_03460 PF11892 Domain of unknown function (DUF3412) I3X05_03460 PF03641 Possible lysine decarboxylase I3X05_03465 PF00990 Diguanylate cyclase, GGDEF domain I3X05_03475 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term I3X05_03475 PF14489 QueF-like protein I3X05_03480 PF07348 Syd protein (SUKH-2) I3X05_03485 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) I3X05_03490 PF03180 NLPA lipoprotein I3X05_03495 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_03500 PF00005 ABC transporter I3X05_03500 PF09383 NIL domain I3X05_03510 PF00356 Bacterial regulatory proteins, lacI family I3X05_03515 PF02378 Phosphotransferase system, EIIC I3X05_03515 PF00367 phosphotransferase system, EIIB I3X05_03520 PF00128 Alpha amylase, catalytic domain I3X05_03520 PF16657 Maltogenic Amylase, C-terminal domain I3X05_03540 PF00464 Serine hydroxymethyltransferase I3X05_03550 PF04055 Radical SAM superfamily I3X05_03550 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family I3X05_03555 PF03099 Biotin/lipoate A/B protein ligase family I3X05_03560 PF04359 Protein of unknown function (DUF493) I3X05_03565 PF00768 D-alanyl-D-alanine carboxypeptidase I3X05_03565 PF07943 Penicillin-binding protein 5, C-terminal domain I3X05_03570 PF05036 Sporulation related domain I3X05_03570 PF03330 Lytic transglycolase I3X05_03575 PF01098 Cell cycle protein I3X05_03580 PF00905 Penicillin binding protein transpeptidase domain I3X05_03580 PF03717 Penicillin-binding Protein dimerisation domain I3X05_03585 PF02590 Predicted SPOUT methyltransferase I3X05_03595 PF14840 Processivity clamp loader gamma complex DNA pol III C-term I3X05_03595 PF06144 DNA polymerase III, delta subunit I3X05_03600 PF04390 Lipopolysaccharide-assembly I3X05_03605 PF00133 tRNA synthetases class I (I, L, M and V) I3X05_03605 PF08264 Anticodon-binding domain of tRNA I3X05_03605 PF13603 Leucyl-tRNA synthetase, Domain 2 I3X05_03610 PF07295 Zinc-ribbon containing domain I3X05_03615 PF00795 Carbon-nitrogen hydrolase I3X05_03620 PF03471 Transporter associated domain I3X05_03620 PF00571 CBS domain I3X05_03625 PF02130 Uncharacterized protein family UPF0054 I3X05_03630 PF02562 PhoH-like protein I3X05_03635 PF00919 Uncharacterized protein family UPF0004 I3X05_03635 PF01938 TRAM domain I3X05_03635 PF04055 Radical SAM superfamily I3X05_03640 PF01494 FAD binding domain I3X05_03730 PF01926 50S ribosome-binding GTPase I3X05_03730 PF06071 Protein of unknown function (DUF933) I3X05_03735 PF01195 Peptidyl-tRNA hydrolase I3X05_03740 PF14572 Phosphoribosyl synthetase-associated domain I3X05_03740 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase I3X05_03745 PF08544 GHMP kinases C terminal I3X05_03745 PF00288 GHMP kinases N terminal domain I3X05_03750 PF03550 Outer membrane lipoprotein LolB I3X05_03755 PF01488 Shikimate / quinate 5-dehydrogenase I3X05_03755 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain I3X05_03755 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain I3X05_03760 PF03462 PCRF domain I3X05_03760 PF00472 RF-1 domain I3X05_03765 PF17827 PrmC N-terminal domain I3X05_03765 PF13847 Methyltransferase domain I3X05_03770 PF04247 Invasion gene expression up-regulator, SirB I3X05_03775 PF13369 Transglutaminase-like superfamily I3X05_03780 PF00793 DAHP synthetase I family I3X05_03785 PF02872 5'-nucleotidase, C-terminal domain I3X05_03785 PF00149 Calcineurin-like phosphoesterase I3X05_03790 PF04073 Aminoacyl-tRNA editing domain I3X05_03795 PF01479 S4 domain I3X05_03795 PF00849 RNA pseudouridylate synthase I3X05_03800 PF01713 Smr domain I3X05_03820 PF02838 Glycosyl hydrolase family 20, domain 2 I3X05_03820 PF00728 Glycosyl hydrolase family 20, catalytic domain I3X05_03820 PF03173 Putative carbohydrate binding domain I3X05_03820 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain I3X05_03830 PF00403 Heavy-metal-associated domain I3X05_03835 PF00749 tRNA synthetases class I (E and Q), catalytic domain I3X05_03900 PF00072 Response regulator receiver domain I3X05_03900 PF01584 CheW-like domain I3X05_03905 PF03705 CheR methyltransferase, all-alpha domain I3X05_03905 PF01739 CheR methyltransferase, SAM binding domain I3X05_03910 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) I3X05_03915 PF00460 Flagella basal body rod protein I3X05_03920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal I3X05_03920 PF00460 Flagella basal body rod protein I3X05_03925 PF13861 FlgD Tudor-like domain I3X05_03925 PF13860 FlgD Ig-like domain I3X05_03925 PF03963 Flagellar hook capping protein - N-terminal region I3X05_03930 PF07559 Flagellar basal body protein FlaE I3X05_03930 PF00460 Flagella basal body rod protein I3X05_03930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal I3X05_03935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal I3X05_03935 PF00460 Flagella basal body rod protein I3X05_03940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal I3X05_03940 PF00460 Flagella basal body rod protein I3X05_03945 PF02107 Flagellar L-ring protein I3X05_03950 PF02119 Flagellar P-ring protein I3X05_03955 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase I3X05_03955 PF10135 Rod binding protein I3X05_03960 PF07196 Flagellin hook IN motif I3X05_03960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal I3X05_03965 PF00669 Bacterial flagellin N-terminal helical region I3X05_03970 PF07196 Flagellin hook IN motif I3X05_03970 PF00700 Bacterial flagellin C-terminal helical region I3X05_03970 PF00669 Bacterial flagellin N-terminal helical region I3X05_03975 PF00669 Bacterial flagellin N-terminal helical region I3X05_03975 PF00700 Bacterial flagellin C-terminal helical region I3X05_03975 PF07196 Flagellin hook IN motif I3X05_03980 PF00700 Bacterial flagellin C-terminal helical region I3X05_03980 PF07196 Flagellin hook IN motif I3X05_03980 PF00669 Bacterial flagellin N-terminal helical region I3X05_03985 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 I3X05_03990 PF02896 PEP-utilising enzyme, TIM barrel domain I3X05_03990 PF00391 PEP-utilising enzyme, mobile domain I3X05_03990 PF05524 PEP-utilising enzyme, N-terminal I3X05_03995 PF00381 PTS HPr component phosphorylation site I3X05_04000 PF00291 Pyridoxal-phosphate dependent enzyme I3X05_04010 PF04354 ZipA, C-terminal FtsZ-binding domain I3X05_04015 PF03119 NAD-dependent DNA ligase C4 zinc finger domain I3X05_04015 PF03120 NAD-dependent DNA ligase OB-fold domain I3X05_04015 PF01653 NAD-dependent DNA ligase adenylation domain I3X05_04015 PF00533 BRCA1 C Terminus (BRCT) domain I3X05_04015 PF12826 Helix-hairpin-helix motif I3X05_04020 PF13609 Gram-negative porin I3X05_04025 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) I3X05_04035 PF16200 C-terminal region of band_7 I3X05_04035 PF01145 SPFH domain / Band 7 family I3X05_04040 PF00085 Thioredoxin I3X05_04045 PF00106 short chain dehydrogenase I3X05_04050 PF01370 NAD dependent epimerase/dehydratase family I3X05_04050 PF08338 Domain of unknown function (DUF1731) I3X05_04055 PF07556 Protein of unknown function (DUF1538) I3X05_04060 PF07556 Protein of unknown function (DUF1538) I3X05_04075 PF12850 Calcineurin-like phosphoesterase superfamily domain I3X05_04090 PF17323 Trans-membrane regulatory protein ToxS I3X05_04095 PF00486 Transcriptional regulatory protein, C terminal I3X05_04100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_04100 PF00183 Hsp90 protein I3X05_04105 PF05191 Adenylate kinase, active site lid I3X05_04110 PF00762 Ferrochelatase I3X05_04115 PF00854 POT family I3X05_04125 PF00733 Asparagine synthase I3X05_04125 PF13537 Glutamine amidotransferase domain I3X05_04130 PF00999 Sodium/hydrogen exchanger family I3X05_04135 PF00480 ROK family I3X05_04135 PF01047 MarR family I3X05_04140 PF01979 Amidohydrolase family I3X05_04145 PF02378 Phosphotransferase system, EIIC I3X05_04145 PF00367 phosphotransferase system, EIIB I3X05_04145 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 I3X05_04150 PF00749 tRNA synthetases class I (E and Q), catalytic domain I3X05_04150 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain I3X05_04155 PF01475 Ferric uptake regulator family I3X05_04165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_04165 PF03466 LysR substrate binding domain I3X05_04170 PF03788 LrgA family I3X05_04175 PF04172 LrgB-like family I3X05_04180 PF00258 Flavodoxin I3X05_04190 PF12697 Alpha/beta hydrolase family I3X05_04195 PF17206 SeqA protein N-terminal domain I3X05_04195 PF03925 SeqA protein C-terminal domain I3X05_04200 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I I3X05_04200 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II I3X05_04200 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III I3X05_04200 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain I3X05_04210 PF01784 NIF3 (NGG1p interacting factor 3) I3X05_04215 PF00285 Citrate synthase, C-terminal domain I3X05_04220 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit I3X05_04225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit I3X05_04230 PF00890 FAD binding domain I3X05_04230 PF02910 Fumarate reductase flavoprotein C-term I3X05_04235 PF13085 2Fe-2S iron-sulfur cluster binding domain I3X05_04240 PF16870 2-oxoglutarate dehydrogenase C-terminal I3X05_04240 PF00676 Dehydrogenase E1 component I3X05_04240 PF16078 2-oxoglutarate dehydrogenase N-terminus I3X05_04240 PF02779 Transketolase, pyrimidine binding domain I3X05_04245 PF02817 e3 binding domain I3X05_04245 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) I3X05_04245 PF00364 Biotin-requiring enzyme I3X05_04250 PF00549 CoA-ligase I3X05_04250 PF08442 ATP-grasp domain I3X05_04255 PF00549 CoA-ligase I3X05_04255 PF02629 CoA binding domain I3X05_04260 PF00950 ABC 3 transport family I3X05_04265 PF00005 ABC transporter I3X05_04270 PF01297 Zinc-uptake complex component A periplasmic I3X05_04280 PF04023 FeoA domain I3X05_04285 PF07664 Ferrous iron transport protein B C terminus I3X05_04285 PF07670 Nucleoside recognition I3X05_04285 PF02421 Ferrous iron transport protein B I3X05_04300 PF00750 tRNA synthetases class I (R) I3X05_04300 PF05746 DALR anticodon binding domain I3X05_04300 PF03485 Arginyl tRNA synthetase N terminal domain I3X05_04305 PF06185 YecM protein I3X05_04310 PF00551 Formyl transferase I3X05_04310 PF01842 ACT domain I3X05_04320 PF04851 Type III restriction enzyme, res subunit I3X05_04320 PF13307 Helicase C-terminal domain I3X05_04325 PF00814 Glycoprotease family I3X05_04340 PF00561 alpha/beta hydrolase fold I3X05_04345 PF00501 AMP-binding enzyme I3X05_04345 PF13193 AMP-binding enzyme C-terminal domain I3X05_04350 PF01612 3'-5' exonuclease I3X05_04350 PF00570 HRDC domain I3X05_04355 PF03776 Septum formation topological specificity factor MinE I3X05_04360 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain I3X05_04365 PF05209 Septum formation inhibitor MinC, N-terminal domain I3X05_04365 PF03775 Septum formation inhibitor MinC, C-terminal domain I3X05_04370 PF05166 YcgL domain I3X05_04375 PF13406 Transglycosylase SLT domain I3X05_04380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_04380 PF03466 LysR substrate binding domain I3X05_04385 PF01773 Na+ dependent nucleoside transporter N-terminus I3X05_04385 PF07662 Na+ dependent nucleoside transporter C-terminus I3X05_04385 PF07670 Nucleoside recognition I3X05_04395 PF00109 Beta-ketoacyl synthase, N-terminal domain I3X05_04395 PF02801 Beta-ketoacyl synthase, C-terminal domain I3X05_04410 PF02801 Beta-ketoacyl synthase, C-terminal domain I3X05_04410 PF00109 Beta-ketoacyl synthase, N-terminal domain I3X05_04435 PF00221 Aromatic amino acid lyase I3X05_04440 PF00535 Glycosyl transferase family 2 I3X05_04450 PF00501 AMP-binding enzyme I3X05_04450 PF13193 AMP-binding enzyme C-terminal domain I3X05_04460 PF00550 Phosphopantetheine attachment site I3X05_04465 PF00550 Phosphopantetheine attachment site I3X05_04490 PF04820 Tryptophan halogenase I3X05_04500 PF02696 Uncharacterized ACR, YdiU/UPF0061 family I3X05_04505 PF00486 Transcriptional regulatory protein, C terminal I3X05_04505 PF00072 Response regulator receiver domain I3X05_04510 PF00512 His Kinase A (phospho-acceptor) domain I3X05_04510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_04510 PF00672 HAMP domain I3X05_04515 PF01547 Bacterial extracellular solute-binding protein I3X05_04520 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_04525 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_04530 PF00005 ABC transporter I3X05_04530 PF17912 MalK OB fold domain I3X05_04530 PF03459 TOBE domain I3X05_04540 PF03480 Bacterial extracellular solute-binding protein, family 7 I3X05_04545 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component I3X05_04550 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component I3X05_04555 PF00158 Sigma-54 interaction domain I3X05_04555 PF00072 Response regulator receiver domain I3X05_04555 PF02954 Bacterial regulatory protein, Fis family I3X05_04560 PF00512 His Kinase A (phospho-acceptor) domain I3X05_04560 PF02743 Cache domain I3X05_04560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_04565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase I3X05_04565 PF05698 Bacterial trigger factor protein (TF) C-terminus I3X05_04565 PF05697 Bacterial trigger factor protein (TF) I3X05_04570 PF00574 Clp protease I3X05_04575 PF10431 C-terminal, D2-small domain, of ClpB protein I3X05_04575 PF06689 ClpX C4-type zinc finger I3X05_04575 PF07724 AAA domain (Cdc48 subfamily) I3X05_04580 PF05362 Lon protease (S16) C-terminal proteolytic domain I3X05_04580 PF02190 ATP-dependent protease La (LON) substrate-binding domain I3X05_04580 PF00004 ATPase family associated with various cellular activities (AAA) I3X05_04585 PF00216 Bacterial DNA-binding protein I3X05_04590 PF13145 PPIC-type PPIASE domain I3X05_04610 PF13286 Phosphohydrolase-associated domain I3X05_04610 PF01966 HD domain I3X05_04620 PF00155 Aminotransferase class I and II I3X05_04625 PF00425 chorismate binding enzyme I3X05_04630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain I3X05_04630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain I3X05_04630 PF16582 Middle domain of thiamine pyrophosphate I3X05_04635 PF12697 Alpha/beta hydrolase family I3X05_04640 PF00378 Enoyl-CoA hydratase/isomerase I3X05_04645 PF13378 Enolase C-terminal domain-like I3X05_04650 PF00501 AMP-binding enzyme I3X05_04650 PF13193 AMP-binding enzyme C-terminal domain I3X05_04660 PF03601 Conserved hypothetical protein 698 I3X05_04665 PF07690 Major Facilitator Superfamily I3X05_04705 PF00873 AcrB/AcrD/AcrF family I3X05_04715 PF00291 Pyridoxal-phosphate dependent enzyme I3X05_04720 PF13404 AsnC-type helix-turn-helix domain I3X05_04720 PF01037 Lrp/AsnC ligand binding domain I3X05_04740 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain I3X05_04750 PF13185 GAF domain I3X05_04750 PF00990 Diguanylate cyclase, GGDEF domain I3X05_04795 PF01483 Proprotein convertase P-domain I3X05_04795 PF00082 Subtilase family I3X05_04815 PF00990 Diguanylate cyclase, GGDEF domain I3X05_04820 PF00571 CBS domain I3X05_04820 PF01743 Poly A polymerase head domain I3X05_04825 PF00403 Heavy-metal-associated domain I3X05_04830 PF01048 Phosphorylase superfamily I3X05_04840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_04840 PF00672 HAMP domain I3X05_04845 PF01230 HIT domain I3X05_04860 PF13036 Peptidoglycan-synthase activator LpoB I3X05_04860 PF08139 Prokaryotic membrane lipoprotein lipid attachment site I3X05_04870 PF05728 Uncharacterised protein family (UPF0227) I3X05_04875 PF07992 Pyridine nucleotide-disulphide oxidoreductase I3X05_04880 PF00581 Rhodanese-like domain I3X05_04880 PF17773 UPF0176 acylphosphatase like domain I3X05_04895 PF00271 Helicase conserved C-terminal domain I3X05_04895 PF02559 CarD-like/TRCF domain I3X05_04895 PF00270 DEAD/DEAH box helicase I3X05_04895 PF03461 TRCF domain I3X05_04895 PF17757 UvrB interaction domain I3X05_04905 PF12704 MacB-like periplasmic core domain I3X05_04905 PF02687 FtsX-like permease family I3X05_04910 PF00005 ABC transporter I3X05_04915 PF12704 MacB-like periplasmic core domain I3X05_04915 PF02687 FtsX-like permease family I3X05_04925 PF00753 Metallo-beta-lactamase superfamily I3X05_04925 PF13567 Domain of unknown function (DUF4131) I3X05_04925 PF03772 Competence protein I3X05_04930 PF00664 ABC transporter transmembrane region I3X05_04930 PF00005 ABC transporter I3X05_04935 PF02606 Tetraacyldisaccharide-1-P 4'-kinase I3X05_04940 PF03966 Trm112p-like protein I3X05_04945 PF02348 Cytidylyltransferase I3X05_04950 PF17155 Gammaproteobacterial periplasmic sensor domain I3X05_04950 PF00990 Diguanylate cyclase, GGDEF domain I3X05_04955 PF04293 SpoVR like protein I3X05_04960 PF04285 Protein of unknown function (DUF444) I3X05_04965 PF08298 PrkA AAA domain I3X05_04965 PF06798 PrkA serine protein kinase C-terminal domain I3X05_04970 PF03887 YfbU domain I3X05_04980 PF04055 Radical SAM superfamily I3X05_04985 PF12729 Four helix bundle sensory module for signal transduction I3X05_04985 PF00672 HAMP domain I3X05_04985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_04995 PF01228 Glycine radical I3X05_04995 PF02901 Pyruvate formate lyase-like I3X05_05010 PF00005 ABC transporter I3X05_05015 PF00497 Bacterial extracellular solute-binding proteins, family 3 I3X05_05020 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_05025 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_05030 PF03372 Endonuclease/Exonuclease/phosphatase family I3X05_05035 PF00672 HAMP domain I3X05_05035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_05040 PF10689 Protein of unknown function (DUF2496) I3X05_05045 PF07445 Primosomal replication protein priC I3X05_05050 PF01925 Sulfite exporter TauE/SafE I3X05_05055 PF13307 Helicase C-terminal domain I3X05_05055 PF06733 DEAD_2 I3X05_05060 PF13609 Gram-negative porin I3X05_05065 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) I3X05_05070 PF00849 RNA pseudouridylate synthase I3X05_05075 PF03971 Monomeric isocitrate dehydrogenase I3X05_05080 PF00313 'Cold-shock' DNA-binding domain I3X05_05085 PF02617 ATP-dependent Clp protease adaptor protein ClpS I3X05_05090 PF07724 AAA domain (Cdc48 subfamily) I3X05_05090 PF17871 AAA lid domain I3X05_05090 PF00004 ATPase family associated with various cellular activities (AAA) I3X05_05090 PF02861 Clp amino terminal domain, pathogenicity island component I3X05_05090 PF10431 C-terminal, D2-small domain, of ClpB protein I3X05_05095 PF01176 Translation initiation factor 1A / IF-1 I3X05_05100 PF04377 Arginine-tRNA-protein transferase, C terminus I3X05_05100 PF04376 Arginine-tRNA-protein transferase, N terminus I3X05_05105 PF03588 Leucyl/phenylalanyl-tRNA protein transferase I3X05_05115 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) I3X05_05120 PF10692 Protein of unknown function (DUF2498) I3X05_05125 PF01751 Toprim domain I3X05_05125 PF01131 DNA topoisomerase I3X05_05125 PF01396 Topoisomerase DNA binding C4 zinc finger I3X05_05125 PF08272 Topoisomerase I zinc-ribbon-like I3X05_05130 PF00483 Nucleotidyl transferase I3X05_05135 PF00534 Glycosyl transferases group 1 I3X05_05135 PF08323 Starch synthase catalytic domain I3X05_05155 PF04994 TfoX C-terminal domain I3X05_05155 PF04993 TfoX N-terminal domain I3X05_05160 PF00356 Bacterial regulatory proteins, lacI family I3X05_05165 PF02613 Nitrate reductase delta subunit I3X05_05170 PF00486 Transcriptional regulatory protein, C terminal I3X05_05170 PF00072 Response regulator receiver domain I3X05_05175 PF02698 DUF218 domain I3X05_05180 PF13847 Methyltransferase domain I3X05_05185 PF17193 MukF C-terminal domain I3X05_05185 PF03882 MukF winged-helix domain I3X05_05185 PF17192 MukF middle domain I3X05_05190 PF04288 MukE-like family I3X05_05195 PF16330 MukB hinge domain I3X05_05195 PF04310 MukB N-terminal I3X05_05200 PF00171 Aldehyde dehydrogenase family I3X05_05215 PF08443 RimK-like ATP-grasp domain I3X05_05215 PF18030 RimK PreATP-grasp domain I3X05_05220 PF08003 Protein of unknown function (DUF1698) I3X05_05225 PF13649 Methyltransferase domain I3X05_05230 PF01904 Protein of unknown function DUF72 I3X05_05235 PF02938 GAD domain I3X05_05235 PF00152 tRNA synthetases class II (D, K and N) I3X05_05235 PF01336 OB-fold nucleic acid binding domain I3X05_05240 PF02075 Crossover junction endodeoxyribonuclease RuvC I3X05_05245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_05245 PF00672 HAMP domain I3X05_05245 PF02203 Tar ligand binding domain homologue I3X05_05250 PF01330 RuvA N terminal domain I3X05_05250 PF07499 RuvA, C-terminal domain I3X05_05255 PF05491 RuvB C-terminal winged helix domain I3X05_05255 PF17864 RuvB AAA lid domain I3X05_05255 PF05496 Holliday junction DNA helicase RuvB P-loop domain I3X05_05260 PF01654 Cytochrome bd terminal oxidase subunit I I3X05_05265 PF02322 Cytochrome bd terminal oxidase subunit II I3X05_05270 PF08173 Membrane bound YbgT-like protein I3X05_05280 PF03061 Thioesterase superfamily I3X05_05285 PF01618 MotA/TolQ/ExbB proton channel family I3X05_05290 PF02472 Biopolymer transport protein ExbD/TolR I3X05_05300 PF04052 TolB amino-terminal domain I3X05_05300 PF07676 WD40-like Beta Propeller Repeat I3X05_05305 PF00691 OmpA family I3X05_05310 PF13174 Tetratricopeptide repeat I3X05_05310 PF16331 TolA binding protein trimerisation I3X05_05315 PF02445 Quinolinate synthetase A protein I3X05_05320 PF00764 Arginosuccinate synthase I3X05_05325 PF03994 Domain of Unknown Function (DUF350) I3X05_05335 PF03738 Glutathionylspermidine synthase preATP-grasp I3X05_05350 PF03150 Di-haem cytochrome c peroxidase I3X05_05370 PF00512 His Kinase A (phospho-acceptor) domain I3X05_05370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_05370 PF00072 Response regulator receiver domain I3X05_05370 PF09308 LuxQ, periplasmic I3X05_05375 PF06610 L-alanine exporter I3X05_05385 PF13356 Arm DNA-binding domain I3X05_05385 PF00589 Phage integrase family I3X05_05420 PF13361 UvrD-like helicase C-terminal domain I3X05_05420 PF12462 DNA helicase IV / RNA helicase N terminal I3X05_05420 PF00580 UvrD/REP helicase N-terminal domain I3X05_05445 PF02384 N-6 DNA Methylase I3X05_05450 PF17761 DUF1016 N-terminal domain I3X05_05450 PF06250 YhcG PDDEXK nuclease domain I3X05_05455 PF01420 Type I restriction modification DNA specificity domain I3X05_05460 PF13007 Transposase C of IS166 homeodomain I3X05_05460 PF13817 IS66 C-terminal element I3X05_05460 PF03050 Transposase IS66 family I3X05_05460 PF13005 zinc-finger binding domain of transposase IS66 I3X05_05485 PF11867 Domain of unknown function (DUF3387) I3X05_05485 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) I3X05_05485 PF18766 SWI2/SNF2 ATPase I3X05_05520 PF02469 Fasciclin domain I3X05_05530 PF08447 PAS fold I3X05_05530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_05535 PF09905 DNA-binding protein VF530 I3X05_05580 PF02223 Thymidylate kinase I3X05_05595 PF00873 AcrB/AcrD/AcrF family I3X05_05610 PF03150 Di-haem cytochrome c peroxidase I3X05_05615 PF00672 HAMP domain I3X05_05615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_05625 PF00875 DNA photolyase I3X05_05625 PF03441 FAD binding domain of DNA photolyase I3X05_05630 PF00089 Trypsin I3X05_05635 PF00990 Diguanylate cyclase, GGDEF domain I3X05_05655 PF01740 STAS domain I3X05_05655 PF00916 Sulfate permease family I3X05_05665 PF08497 Radical SAM N-terminal I3X05_05665 PF11842 Domain of unknown function (DUF3362) I3X05_05665 PF04055 Radical SAM superfamily I3X05_05670 PF03707 Bacterial signalling protein N terminal repeat I3X05_05670 PF00990 Diguanylate cyclase, GGDEF domain I3X05_05670 PF00563 EAL domain I3X05_05685 PF03466 LysR substrate binding domain I3X05_05685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_05690 PF08267 Cobalamin-independent synthase, N-terminal domain I3X05_05690 PF01717 Cobalamin-independent synthase, Catalytic domain I3X05_05700 PF03795 YCII-related domain I3X05_05705 PF03061 Thioesterase superfamily I3X05_05710 PF04279 Intracellular septation protein A I3X05_05720 PF00375 Sodium:dicarboxylate symporter family I3X05_05725 PF00290 Tryptophan synthase alpha chain I3X05_05730 PF00291 Pyridoxal-phosphate dependent enzyme I3X05_05735 PF00218 Indole-3-glycerol phosphate synthase I3X05_05735 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase I3X05_05740 PF02885 Glycosyl transferase family, helical bundle domain I3X05_05740 PF00591 Glycosyl transferase family, a/b domain I3X05_05745 PF00117 Glutamine amidotransferase class-I I3X05_05750 PF04715 Anthranilate synthase component I, N terminal region I3X05_05750 PF00425 chorismate binding enzyme I3X05_05755 PF08056 Tryptophan operon leader peptide I3X05_05760 PF02811 PHP domain I3X05_05765 PF01300 Telomere recombination I3X05_05770 PF01479 S4 domain I3X05_05770 PF00849 RNA pseudouridylate synthase I3X05_05775 PF04269 Protein of unknown function, DUF440 I3X05_05780 PF08207 Elongation factor P (EF-P) KOW-like domain I3X05_05780 PF01132 Elongation factor P (EF-P) OB domain I3X05_05780 PF09285 Elongation factor P, C-terminal I3X05_05790 PF02378 Phosphotransferase system, EIIC I3X05_05795 PF00136 DNA polymerase family B I3X05_05795 PF03104 DNA polymerase family B, exonuclease domain I3X05_05800 PF00196 Bacterial regulatory proteins, luxR family I3X05_05800 PF00072 Response regulator receiver domain I3X05_05805 PF08459 UvrC Helix-hairpin-helix N-terminal I3X05_05805 PF01541 GIY-YIG catalytic domain I3X05_05805 PF02151 UvrB/uvrC motif I3X05_05810 PF01066 CDP-alcohol phosphatidyltransferase I3X05_05835 PF00202 Aminotransferase class-III I3X05_05840 PF16653 Saccharopine dehydrogenase C-terminal domain I3X05_05840 PF03435 Saccharopine dehydrogenase NADP binding domain I3X05_05860 PF02464 Competence-damaged protein I3X05_05860 PF00994 Probable molybdopterin binding domain I3X05_05870 PF00268 Ribonucleotide reductase, small chain I3X05_05875 PF02867 Ribonucleotide reductase, barrel domain I3X05_05875 PF00317 Ribonucleotide reductase, all-alpha domain I3X05_05875 PF03477 ATP cone domain I3X05_05885 PF03989 DNA gyrase C-terminal domain, beta-propeller I3X05_05885 PF00521 DNA gyrase/topoisomerase IV, subunit A I3X05_05900 PF00925 GTP cyclohydrolase II I3X05_05925 PF01471 Putative peptidoglycan binding domain I3X05_05925 PF03734 L,D-transpeptidase catalytic domain I3X05_05930 PF05951 Bacterial protein of unknown function (DUF882) I3X05_05935 PF00753 Metallo-beta-lactamase superfamily I3X05_05950 PF03480 Bacterial extracellular solute-binding protein, family 7 I3X05_05960 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component I3X05_05965 PF07730 Histidine kinase I3X05_05965 PF17200 Single Cache domain 2 I3X05_05970 PF00072 Response regulator receiver domain I3X05_05970 PF00196 Bacterial regulatory proteins, luxR family I3X05_05975 PF01047 MarR family I3X05_05980 PF02028 BCCT, betaine/carnitine/choline family transporter I3X05_05985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_05985 PF00672 HAMP domain I3X05_05985 PF02743 Cache domain I3X05_06005 PF00155 Aminotransferase class I and II I3X05_06010 PF01966 HD domain I3X05_06010 PF00672 HAMP domain I3X05_06015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_06015 PF00672 HAMP domain I3X05_06015 PF12729 Four helix bundle sensory module for signal transduction I3X05_06025 PF00392 Bacterial regulatory proteins, gntR family I3X05_06025 PF00155 Aminotransferase class I and II I3X05_06035 PF01336 OB-fold nucleic acid binding domain I3X05_06035 PF00152 tRNA synthetases class II (D, K and N) I3X05_06040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_06040 PF00672 HAMP domain I3X05_06045 PF01242 6-pyruvoyl tetrahydropterin synthase I3X05_06050 PF02321 Outer membrane efflux protein I3X05_06055 PF00005 ABC transporter I3X05_06055 PF12704 MacB-like periplasmic core domain I3X05_06055 PF02687 FtsX-like permease family I3X05_06060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion I3X05_06065 PF03315 Serine dehydratase beta chain I3X05_06065 PF03313 Serine dehydratase alpha chain I3X05_06070 PF03222 Tryptophan/tyrosine permease family I3X05_06075 PF00293 NUDIX domain I3X05_06080 PF04715 Anthranilate synthase component I, N terminal region I3X05_06080 PF00425 chorismate binding enzyme I3X05_06095 PF04317 YcjX-like family, DUF463 I3X05_06100 PF05128 Domain of unknown function (DUF697) I3X05_06105 PF00158 Sigma-54 interaction domain I3X05_06105 PF18024 Helix-turn-helix domain I3X05_06110 PF13302 Acetyltransferase (GNAT) domain I3X05_06125 PF00939 Sodium:sulfate symporter transmembrane region I3X05_06130 PF00497 Bacterial extracellular solute-binding proteins, family 3 I3X05_06130 PF00512 His Kinase A (phospho-acceptor) domain I3X05_06130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_06135 PF02954 Bacterial regulatory protein, Fis family I3X05_06135 PF00158 Sigma-54 interaction domain I3X05_06135 PF00072 Response regulator receiver domain I3X05_06140 PF17158 Membrane-associated sensor, integral membrane domain I3X05_06140 PF00990 Diguanylate cyclase, GGDEF domain I3X05_06145 PF03707 Bacterial signalling protein N terminal repeat I3X05_06145 PF00990 Diguanylate cyclase, GGDEF domain I3X05_06145 PF00563 EAL domain I3X05_06155 PF11871 Domain of unknown function (DUF3391) I3X05_06155 PF01966 HD domain I3X05_06160 PF03707 Bacterial signalling protein N terminal repeat I3X05_06160 PF00990 Diguanylate cyclase, GGDEF domain I3X05_06160 PF00563 EAL domain I3X05_06160 PF13188 PAS domain I3X05_06165 PF11230 Protein of unknown function (DUF3029) I3X05_06170 PF04055 Radical SAM superfamily I3X05_06195 PF03222 Tryptophan/tyrosine permease family I3X05_06200 PF00072 Response regulator receiver domain I3X05_06205 PF00210 Ferritin-like domain I3X05_06220 PF00664 ABC transporter transmembrane region I3X05_06220 PF00005 ABC transporter I3X05_06225 PF00005 ABC transporter I3X05_06225 PF00664 ABC transporter transmembrane region I3X05_06235 PF03707 Bacterial signalling protein N terminal repeat I3X05_06235 PF00563 EAL domain I3X05_06235 PF00990 Diguanylate cyclase, GGDEF domain I3X05_06245 PF03372 Endonuclease/Exonuclease/phosphatase family I3X05_06270 PF01810 LysE type translocator I3X05_06275 PF00012 Hsp70 protein I3X05_06280 PF00012 Hsp70 protein I3X05_06340 PF13629 Pilus formation protein N terminal region I3X05_06340 PF00263 Bacterial type II and III secretion system protein I3X05_06340 PF04972 BON domain I3X05_06350 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain I3X05_06355 PF00437 Type II/IV secretion system protein I3X05_06390 PF02525 Flavodoxin-like fold I3X05_06395 PF00270 DEAD/DEAH box helicase I3X05_06395 PF11898 Domain of unknown function (DUF3418) I3X05_06395 PF04408 Helicase associated domain (HA2) I3X05_06395 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold I3X05_06395 PF00271 Helicase conserved C-terminal domain I3X05_06420 PF00561 alpha/beta hydrolase fold I3X05_06425 PF03280 Proteobacterial lipase chaperone protein I3X05_06430 PF07690 Major Facilitator Superfamily I3X05_06435 PF00491 Arginase family I3X05_06440 PF17810 Arginine decarboxylase helical bundle domain I3X05_06440 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain I3X05_06440 PF17944 Arginine decarboxylase C-terminal helical extension I3X05_06490 PF00990 Diguanylate cyclase, GGDEF domain I3X05_06490 PF00072 Response regulator receiver domain I3X05_06495 PF01409 tRNA synthetases class II core domain (F) I3X05_06495 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain I3X05_06500 PF03484 tRNA synthetase B5 domain I3X05_06500 PF03147 Ferredoxin-fold anticodon binding domain I3X05_06500 PF03483 B3/4 domain I3X05_06500 PF01588 Putative tRNA binding domain I3X05_06500 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain I3X05_06505 PF12792 CSS motif domain associated with EAL I3X05_06505 PF00563 EAL domain I3X05_06510 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family I3X05_06510 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain I3X05_06525 PF00216 Bacterial DNA-binding protein I3X05_06530 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) I3X05_06540 PF05724 Thiopurine S-methyltransferase (TPMT) I3X05_06545 PF02222 ATP-grasp domain I3X05_06550 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region I3X05_06550 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region I3X05_06555 PF04172 LrgB-like family I3X05_06560 PF03788 LrgA family I3X05_06565 PF08411 Exonuclease C-terminal I3X05_06565 PF00929 Exonuclease I3X05_06570 PF00589 Phage integrase family I3X05_06570 PF13356 Arm DNA-binding domain I3X05_06570 PF14659 Phage integrase, N-terminal SAM-like domain I3X05_06590 PF04245 37-kD nucleoid-associated bacterial protein I3X05_06650 PF01695 IstB-like ATP binding protein I3X05_06825 PF02277 Phosphoribosyltransferase I3X05_06830 PF02654 Cobalamin-5-phosphate synthase I3X05_06835 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase I3X05_06850 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family I3X05_06855 PF01032 FecCD transport family I3X05_06860 PF00005 ABC transporter I3X05_06875 PF07690 Major Facilitator Superfamily I3X05_06880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_06880 PF03466 LysR substrate binding domain I3X05_06890 PF01863 Protein of unknown function DUF45 I3X05_06895 PF05971 RNA methyltransferase I3X05_06910 PF04204 Homoserine O-succinyltransferase I3X05_06915 PF01568 Molydopterin dinucleotide binding domain I3X05_06915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain I3X05_06915 PF00384 Molybdopterin oxidoreductase I3X05_06915 PF04324 BFD-like [2Fe-2S] binding domain I3X05_06920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases I3X05_06920 PF14824 Sirohaem biosynthesis protein central I3X05_06920 PF10414 Sirohaem synthase dimerisation region I3X05_06925 PF02885 Glycosyl transferase family, helical bundle domain I3X05_06925 PF00591 Glycosyl transferase family, a/b domain I3X05_06930 PF03861 ANTAR domain I3X05_06930 PF08376 Nitrate and nitrite sensing I3X05_06935 PF00005 ABC transporter I3X05_06940 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_06945 PF00005 ABC transporter I3X05_06950 PF13806 Rieske-like [2Fe-2S] domain I3X05_06950 PF01077 Nitrite and sulphite reductase 4Fe-4S domain I3X05_06950 PF04324 BFD-like [2Fe-2S] binding domain I3X05_06950 PF18267 Rubredoxin NAD+ reductase C-terminal domain I3X05_06950 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain I3X05_06950 PF07992 Pyridine nucleotide-disulphide oxidoreductase I3X05_06955 PF00355 Rieske [2Fe-2S] domain I3X05_06965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily I3X05_06970 PF04209 homogentisate 1,2-dioxygenase I3X05_06980 PF02798 Glutathione S-transferase, N-terminal domain I3X05_06980 PF14497 Glutathione S-transferase, C-terminal domain I3X05_07010 PF04324 BFD-like [2Fe-2S] binding domain I3X05_07010 PF01077 Nitrite and sulphite reductase 4Fe-4S domain I3X05_07010 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain I3X05_07010 PF07992 Pyridine nucleotide-disulphide oxidoreductase I3X05_07010 PF18267 Rubredoxin NAD+ reductase C-terminal domain I3X05_07015 PF13806 Rieske-like [2Fe-2S] domain I3X05_07025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases I3X05_07025 PF14824 Sirohaem biosynthesis protein central I3X05_07025 PF10414 Sirohaem synthase dimerisation region I3X05_07030 PF00313 'Cold-shock' DNA-binding domain I3X05_07035 PF00072 Response regulator receiver domain I3X05_07040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_07040 PF02743 Cache domain I3X05_07040 PF00672 HAMP domain I3X05_07045 PF01925 Sulfite exporter TauE/SafE I3X05_07050 PF01970 Tripartite tricarboxylate transporter TctA family I3X05_07075 PF00285 Citrate synthase, C-terminal domain I3X05_07080 PF00330 Aconitase family (aconitate hydratase) I3X05_07080 PF00694 Aconitase C-terminal domain I3X05_07085 PF04303 PrpF protein I3X05_07090 PF00501 AMP-binding enzyme I3X05_07090 PF13193 AMP-binding enzyme C-terminal domain I3X05_07090 PF16177 Acetyl-coenzyme A synthetase N-terminus I3X05_07110 PF04055 Radical SAM superfamily I3X05_07115 PF06508 Queuosine biosynthesis protein QueC I3X05_07120 PF17158 Membrane-associated sensor, integral membrane domain I3X05_07120 PF00990 Diguanylate cyclase, GGDEF domain I3X05_07130 PF00691 OmpA family I3X05_07130 PF05736 OprF membrane domain I3X05_07295 PF10672 S-adenosylmethionine-dependent methyltransferase I3X05_07295 PF17785 PUA-like domain I3X05_07300 PF00672 HAMP domain I3X05_07300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_07300 PF12729 Four helix bundle sensory module for signal transduction I3X05_07305 PF00708 Acylphosphatase I3X05_07310 PF04358 DsrC like protein I3X05_07315 PF01027 Inhibitor of apoptosis-promoting Bax1 I3X05_07320 PF00005 ABC transporter I3X05_07325 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_07330 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_07335 PF00497 Bacterial extracellular solute-binding proteins, family 3 I3X05_07340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases I3X05_07340 PF14824 Sirohaem biosynthesis protein central I3X05_07340 PF10414 Sirohaem synthase dimerisation region I3X05_07345 PF04461 Protein of unknown function (DUF520) I3X05_07350 PF00793 DAHP synthetase I family I3X05_07355 PF02896 PEP-utilising enzyme, TIM barrel domain I3X05_07355 PF00391 PEP-utilising enzyme, mobile domain I3X05_07355 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain I3X05_07375 PF17783 CvfB-like winged helix domain I3X05_07375 PF13509 S1 domain I3X05_07380 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF I3X05_07380 PF01189 16S rRNA methyltransferase RsmB/F I3X05_07380 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF I3X05_07385 PF02470 MlaD protein I3X05_07390 PF04403 Paraquat-inducible protein A I3X05_07395 PF00664 ABC transporter transmembrane region I3X05_07395 PF00005 ABC transporter I3X05_07400 PF13185 GAF domain I3X05_07405 PF04352 ProQ/FINO family I3X05_07405 PF17516 ProQ C-terminal domain I3X05_07410 PF00595 PDZ domain I3X05_07410 PF11818 C-terminal domain of tail specific protease (DUF3340) I3X05_07410 PF17804 Tail specific protease N-terminal domain I3X05_07410 PF03572 Peptidase family S41 I3X05_07420 PF01433 Peptidase family M1 domain I3X05_07420 PF17432 Domain of unknown function (DUF3458_C) ARM repeats I3X05_07420 PF11940 Domain of unknown function (DUF3458) Ig-like fold I3X05_07430 PF05088 Bacterial NAD-glutamate dehydrogenase I3X05_07435 PF01180 Dihydroorotate dehydrogenase I3X05_07440 PF07126 Cell-division protein ZapC I3X05_07445 PF01170 Putative RNA methylase family UPF0020 I3X05_07445 PF02926 THUMP domain I3X05_07445 PF10672 S-adenosylmethionine-dependent methyltransferase I3X05_07455 PF00005 ABC transporter I3X05_07455 PF12848 ABC transporter I3X05_07455 PF16326 ABC transporter C-terminal domain I3X05_07465 PF04957 Ribosome modulation factor I3X05_07470 PF07977 FabA-like domain I3X05_07475 PF13654 AAA domain I3X05_07475 PF05362 Lon protease (S16) C-terminal proteolytic domain I3X05_07480 PF17414 MatP C-terminal ribbon-helix-helix domain I3X05_07480 PF06303 MatP N-terminal domain I3X05_07580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_07580 PF00072 Response regulator receiver domain I3X05_07580 PF09308 LuxQ, periplasmic I3X05_07580 PF00512 His Kinase A (phospho-acceptor) domain I3X05_07595 PF00115 Cytochrome C and Quinol oxidase polypeptide I I3X05_07610 PF13442 Cytochrome C oxidase, cbb3-type, subunit III I3X05_07610 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP I3X05_07620 PF00403 Heavy-metal-associated domain I3X05_07635 PF13545 Crp-like helix-turn-helix domain I3X05_07635 PF00027 Cyclic nucleotide-binding domain I3X05_07640 PF00582 Universal stress protein family I3X05_07645 PF01171 PP-loop family I3X05_07655 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase I3X05_07665 PF00005 ABC transporter I3X05_07665 PF08402 TOBE domain I3X05_07670 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_07675 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_07680 PF13416 Bacterial extracellular solute-binding protein I3X05_07685 PF13416 Bacterial extracellular solute-binding protein I3X05_07690 PF02146 Sir2 family I3X05_07695 PF00909 Ammonium Transporter Family I3X05_07700 PF00005 ABC transporter I3X05_07700 PF12848 ABC transporter I3X05_07705 PF12804 MobA-like NTP transferase domain I3X05_07710 PF03205 Molybdopterin guanine dinucleotide synthesis protein B I3X05_07720 PF00480 ROK family I3X05_07725 PF03942 DTW domain I3X05_07735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_07735 PF00672 HAMP domain I3X05_07735 PF12729 Four helix bundle sensory module for signal transduction I3X05_07740 PF00877 NlpC/P60 family I3X05_07750 PF05230 MASE2 domain I3X05_07750 PF00990 Diguanylate cyclase, GGDEF domain I3X05_07755 PF00072 Response regulator receiver domain I3X05_07755 PF01339 CheB methylesterase I3X05_07760 PF03881 Fructosamine kinase I3X05_07770 PF00677 Lumazine binding domain I3X05_07775 PF01554 MatE I3X05_07805 PF03009 Glycerophosphoryl diester phosphodiesterase family I3X05_07810 PF00356 Bacterial regulatory proteins, lacI family I3X05_07815 PF00232 Glycosyl hydrolase family 1 I3X05_07820 PF00141 Peroxidase I3X05_07825 PF13808 DDE_Tnp_1-associated I3X05_07825 PF01609 Transposase DDE domain I3X05_07835 PF13358 DDE superfamily endonuclease I3X05_07840 PF13005 zinc-finger binding domain of transposase IS66 I3X05_07840 PF03050 Transposase IS66 family I3X05_07840 PF13817 IS66 C-terminal element I3X05_07840 PF13007 Transposase C of IS166 homeodomain I3X05_07865 PF13808 DDE_Tnp_1-associated I3X05_07865 PF01609 Transposase DDE domain I3X05_07885 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 I3X05_07885 PF13542 Helix-turn-helix domain of transposase family ISL3 I3X05_07885 PF01610 Transposase I3X05_07925 PF13808 DDE_Tnp_1-associated I3X05_07925 PF01609 Transposase DDE domain I3X05_07930 PF01381 Helix-turn-helix I3X05_07935 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB I3X05_07965 PF05016 ParE toxin of type II toxin-antitoxin system, parDE I3X05_08030 PF01966 HD domain I3X05_08070 PF13808 DDE_Tnp_1-associated I3X05_08070 PF01609 Transposase DDE domain I3X05_08095 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) I3X05_08105 PF13808 DDE_Tnp_1-associated I3X05_08105 PF01609 Transposase DDE domain I3X05_08130 PF13007 Transposase C of IS166 homeodomain I3X05_08130 PF13005 zinc-finger binding domain of transposase IS66 I3X05_08130 PF03050 Transposase IS66 family I3X05_08130 PF13817 IS66 C-terminal element I3X05_08140 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) I3X05_08180 PF12833 Helix-turn-helix domain I3X05_08195 PF09827 CRISPR associated protein Cas2 I3X05_08200 PF01867 CRISPR associated protein Cas1 I3X05_08220 PF09704 CRISPR-associated protein (Cas_Cas5) I3X05_08245 PF05016 ParE toxin of type II toxin-antitoxin system, parDE I3X05_08255 PF13302 Acetyltransferase (GNAT) domain I3X05_08290 PF01610 Transposase I3X05_08290 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 I3X05_08290 PF13542 Helix-turn-helix domain of transposase family ISL3 I3X05_08330 PF01609 Transposase DDE domain I3X05_08330 PF13808 DDE_Tnp_1-associated I3X05_08345 PF13673 Acetyltransferase (GNAT) domain I3X05_08350 PF13673 Acetyltransferase (GNAT) domain I3X05_08355 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system I3X05_08360 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system I3X05_08375 PF01609 Transposase DDE domain I3X05_08375 PF13808 DDE_Tnp_1-associated I3X05_08380 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 I3X05_08380 PF13542 Helix-turn-helix domain of transposase family ISL3 I3X05_08380 PF01610 Transposase I3X05_08385 PF01609 Transposase DDE domain I3X05_08385 PF13808 DDE_Tnp_1-associated I3X05_08390 PF01609 Transposase DDE domain I3X05_08390 PF13808 DDE_Tnp_1-associated I3X05_08400 PF00583 Acetyltransferase (GNAT) family I3X05_08460 PF13542 Helix-turn-helix domain of transposase family ISL3 I3X05_08460 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 I3X05_08460 PF01610 Transposase I3X05_08505 PF01609 Transposase DDE domain I3X05_08505 PF13808 DDE_Tnp_1-associated I3X05_08525 PF00561 alpha/beta hydrolase fold I3X05_08545 PF13808 DDE_Tnp_1-associated I3X05_08545 PF01609 Transposase DDE domain I3X05_08575 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH I3X05_08650 PF13817 IS66 C-terminal element I3X05_08650 PF13005 zinc-finger binding domain of transposase IS66 I3X05_08650 PF03050 Transposase IS66 family I3X05_08650 PF13007 Transposase C of IS166 homeodomain I3X05_08760 PF01610 Transposase I3X05_08760 PF13542 Helix-turn-helix domain of transposase family ISL3 I3X05_08760 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 I3X05_08780 PF05840 Bacteriophage replication gene A protein (GPA) I3X05_08800 PF00589 Phage integrase family I3X05_08860 PF09905 DNA-binding protein VF530 I3X05_09010 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 I3X05_09010 PF01610 Transposase I3X05_09010 PF13542 Helix-turn-helix domain of transposase family ISL3 I3X05_09015 PF00583 Acetyltransferase (GNAT) family I3X05_09050 PF03050 Transposase IS66 family I3X05_09050 PF13005 zinc-finger binding domain of transposase IS66 I3X05_09050 PF13007 Transposase C of IS166 homeodomain I3X05_09050 PF13817 IS66 C-terminal element I3X05_09215 PF13808 DDE_Tnp_1-associated I3X05_09215 PF01609 Transposase DDE domain I3X05_09245 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system I3X05_09250 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system I3X05_09395 PF13673 Acetyltransferase (GNAT) domain I3X05_09510 PF08212 Lipocalin-like domain I3X05_09540 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 I3X05_09540 PF01610 Transposase I3X05_09540 PF13542 Helix-turn-helix domain of transposase family ISL3 I3X05_09650 PF04229 GrpB protein I3X05_09660 PF01609 Transposase DDE domain I3X05_09660 PF13808 DDE_Tnp_1-associated I3X05_09665 PF01610 Transposase I3X05_09665 PF13542 Helix-turn-helix domain of transposase family ISL3 I3X05_09665 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 I3X05_09670 PF13808 DDE_Tnp_1-associated I3X05_09670 PF01609 Transposase DDE domain I3X05_09675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily I3X05_09685 PF01636 Phosphotransferase enzyme family I3X05_09720 PF13344 Haloacid dehalogenase-like hydrolase I3X05_09720 PF00293 NUDIX domain I3X05_09755 PF05016 ParE toxin of type II toxin-antitoxin system, parDE I3X05_09770 PF13808 DDE_Tnp_1-associated I3X05_09770 PF01609 Transposase DDE domain I3X05_09775 PF01609 Transposase DDE domain I3X05_09775 PF13808 DDE_Tnp_1-associated I3X05_09780 PF13808 DDE_Tnp_1-associated I3X05_09780 PF01609 Transposase DDE domain I3X05_09790 PF01610 Transposase I3X05_09790 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 I3X05_09790 PF13542 Helix-turn-helix domain of transposase family ISL3 I3X05_09885 PF13808 DDE_Tnp_1-associated I3X05_09885 PF01609 Transposase DDE domain I3X05_09955 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA I3X05_09960 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system I3X05_09980 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 I3X05_09980 PF13542 Helix-turn-helix domain of transposase family ISL3 I3X05_09980 PF01610 Transposase I3X05_10035 PF05016 ParE toxin of type II toxin-antitoxin system, parDE I3X05_10065 PF02272 DHHA1 domain I3X05_10065 PF01411 tRNA synthetases class II (A) I3X05_10065 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain I3X05_10080 PF13673 Acetyltransferase (GNAT) domain I3X05_10130 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain I3X05_10130 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase I3X05_10135 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase I3X05_10140 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain I3X05_10140 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain I3X05_10145 PF00072 Response regulator receiver domain I3X05_10150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_10150 PF00989 PAS fold I3X05_10150 PF17203 Single cache domain 3 I3X05_10150 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain I3X05_10165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion I3X05_10190 PF01235 Sodium:alanine symporter family I3X05_10200 PF01810 LysE type translocator I3X05_10205 PF02074 Carboxypeptidase Taq (M32) metallopeptidase I3X05_10210 PF02567 Phenazine biosynthesis-like protein I3X05_10215 PF00589 Phage integrase family I3X05_10215 PF13495 Phage integrase, N-terminal SAM-like domain I3X05_10370 PF07102 Protein of unknown function (DUF1364) I3X05_10420 PF00717 Peptidase S24-like I3X05_10420 PF01381 Helix-turn-helix I3X05_10460 PF00145 C-5 cytosine-specific DNA methylase I3X05_10495 PF00717 Peptidase S24-like I3X05_10500 PF13438 Domain of unknown function (DUF4113) I3X05_10500 PF00817 impB/mucB/samB family I3X05_10500 PF11799 impB/mucB/samB family C-terminal domain I3X05_10520 PF00589 Phage integrase family I3X05_10520 PF12167 Arm DNA-binding domain I3X05_10530 PF00453 Ribosomal protein L20 I3X05_10535 PF01632 Ribosomal protein L35 I3X05_10540 PF00707 Translation initiation factor IF-3, C-terminal domain I3X05_10540 PF05198 Translation initiation factor IF-3, N-terminal domain I3X05_10545 PF03129 Anticodon binding domain I3X05_10545 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain I3X05_10545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) I3X05_10545 PF02824 TGS domain I3X05_10555 PF07702 UTRA domain I3X05_10555 PF00392 Bacterial regulatory proteins, gntR family I3X05_10560 PF01979 Amidohydrolase family I3X05_10565 PF00491 Arginase family I3X05_10570 PF01175 Urocanase Rossmann-like domain I3X05_10570 PF17392 Urocanase C-terminal domain I3X05_10570 PF17391 Urocanase N-terminal domain I3X05_10575 PF00221 Aromatic amino acid lyase I3X05_10585 PF04191 Phospholipid methyltransferase I3X05_10590 PF13183 4Fe-4S dicluster domain I3X05_10590 PF01565 FAD binding domain I3X05_10590 PF02913 FAD linked oxidases, C-terminal domain I3X05_10605 PF00691 OmpA family I3X05_10605 PF13488 Glycine zipper I3X05_10625 PF01259 SAICAR synthetase I3X05_10635 PF02253 Phospholipase A1 I3X05_10640 PF08482 ATP-dependent helicase C-terminal I3X05_10640 PF00271 Helicase conserved C-terminal domain I3X05_10640 PF04408 Helicase associated domain (HA2) I3X05_10640 PF00270 DEAD/DEAH box helicase I3X05_10645 PF00390 Malic enzyme, N-terminal domain I3X05_10645 PF03949 Malic enzyme, NAD binding domain I3X05_10650 PF02698 DUF218 domain I3X05_10655 PF00939 Sodium:sulfate symporter transmembrane region I3X05_10660 PF00072 Response regulator receiver domain I3X05_10660 PF00990 Diguanylate cyclase, GGDEF domain I3X05_10670 PF00266 Aminotransferase class-V I3X05_10680 PF07992 Pyridine nucleotide-disulphide oxidoreductase I3X05_10685 PF00005 ABC transporter I3X05_10685 PF00664 ABC transporter transmembrane region I3X05_10690 PF00664 ABC transporter transmembrane region I3X05_10690 PF00005 ABC transporter I3X05_10695 PF00266 Aminotransferase class-V I3X05_10705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_10705 PF13188 PAS domain I3X05_10705 PF00989 PAS fold I3X05_10705 PF13426 PAS domain I3X05_10705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_10705 PF00512 His Kinase A (phospho-acceptor) domain I3X05_10705 PF00512 His Kinase A (phospho-acceptor) domain I3X05_10705 PF00989 PAS fold I3X05_10705 PF13188 PAS domain I3X05_10705 PF13426 PAS domain I3X05_10720 PF04994 TfoX C-terminal domain I3X05_10720 PF04993 TfoX N-terminal domain I3X05_10730 PF03956 Lysine exporter LysO I3X05_10740 PF00282 Pyridoxal-dependent decarboxylase conserved domain I3X05_10745 PF01380 SIS domain I3X05_10745 PF01418 Helix-turn-helix domain, rpiR family I3X05_10750 PF00171 Aldehyde dehydrogenase family I3X05_10750 PF00465 Iron-containing alcohol dehydrogenase I3X05_10755 PF00462 Glutaredoxin I3X05_10760 PF06826 Predicted Permease Membrane Region I3X05_10760 PF02080 TrkA-C domain I3X05_10765 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase I3X05_10765 PF12241 Trans-2-enoyl-CoA reductase catalytic region I3X05_10765 PF07055 Enoyl reductase FAD binding domain I3X05_10770 PF09317 Domain of unknown function (DUF1974) I3X05_10770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain I3X05_10770 PF02770 Acyl-CoA dehydrogenase, middle domain I3X05_10770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain I3X05_10780 PF06965 Na+/H+ antiporter 1 I3X05_10795 PF00005 ABC transporter I3X05_10800 PF01554 MatE I3X05_10805 PF11066 Protein of unknown function (DUF2867) I3X05_10805 PF13460 NAD(P)H-binding I3X05_10815 PF07690 Major Facilitator Superfamily I3X05_10820 PF01479 S4 domain I3X05_10820 PF00849 RNA pseudouridylate synthase I3X05_10825 PF00271 Helicase conserved C-terminal domain I3X05_10825 PF04851 Type III restriction enzyme, res subunit I3X05_10835 PF00072 Response regulator receiver domain I3X05_10835 PF00486 Transcriptional regulatory protein, C terminal I3X05_10840 PF00512 His Kinase A (phospho-acceptor) domain I3X05_10840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_10840 PF00989 PAS fold I3X05_10840 PF11808 Phosphate regulon sensor protein PhoR I3X05_10845 PF01386 Ribosomal L25p family I3X05_10850 PF02872 5'-nucleotidase, C-terminal domain I3X05_10850 PF00149 Calcineurin-like phosphoesterase I3X05_10860 PF06945 Protein of unknown function (DUF1289) I3X05_10870 PF13416 Bacterial extracellular solute-binding protein I3X05_10875 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_10880 PF00005 ABC transporter I3X05_10885 PF01066 CDP-alcohol phosphatidyltransferase I3X05_10900 PF02926 THUMP domain I3X05_10900 PF01170 Putative RNA methylase family UPF0020 I3X05_10900 PF10672 S-adenosylmethionine-dependent methyltransferase I3X05_10905 PF00849 RNA pseudouridylate synthase I3X05_10910 PF00209 Sodium:neurotransmitter symporter family I3X05_10915 PF13396 Phospholipase_D-nuclease N-terminal I3X05_10915 PF13091 PLD-like domain I3X05_10920 PF01053 Cys/Met metabolism PLP-dependent enzyme I3X05_10925 PF03352 Methyladenine glycosylase I3X05_10930 PF00873 AcrB/AcrD/AcrF family I3X05_10935 PF13533 Biotin-lipoyl like I3X05_10940 PF00529 HlyD membrane-fusion protein of T1SS I3X05_10940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion I3X05_10945 PF04024 PspC domain I3X05_10950 PF06667 Phage shock protein B I3X05_10955 PF04012 PspA/IM30 family I3X05_10960 PF00158 Sigma-54 interaction domain I3X05_10960 PF02954 Bacterial regulatory protein, Fis family I3X05_10965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle I3X05_10970 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_10975 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_10975 PF12911 N-terminal TM domain of oligopeptide transport permease C I3X05_10980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_10980 PF00005 ABC transporter I3X05_10985 PF00005 ABC transporter I3X05_11000 PF02833 DHHA2 domain I3X05_11000 PF01368 DHH family I3X05_11010 PF00384 Molybdopterin oxidoreductase I3X05_11010 PF01568 Molydopterin dinucleotide binding domain I3X05_11010 PF18364 Molybdopterin oxidoreductase N-terminal domain I3X05_11015 PF03264 NapC/NirT cytochrome c family, N-terminal region I3X05_11020 PF06796 Periplasmic nitrate reductase protein NapE I3X05_11025 PF01226 Formate/nitrite transporter I3X05_11045 PF01370 NAD dependent epimerase/dehydratase family I3X05_11050 PF00265 Thymidine kinase I3X05_11055 PF09190 DALR domain I3X05_11055 PF01406 tRNA synthetases class I (C) catalytic domain I3X05_11060 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD I3X05_11065 PF00149 Calcineurin-like phosphoesterase I3X05_11070 PF00563 EAL domain I3X05_11070 PF08668 HDOD domain I3X05_11075 PF02810 SEC-C motif I3X05_11080 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase I3X05_11080 PF01502 Phosphoribosyl-AMP cyclohydrolase I3X05_11085 PF00977 Histidine biosynthesis protein I3X05_11090 PF00977 Histidine biosynthesis protein I3X05_11095 PF00117 Glutamine amidotransferase class-I I3X05_11100 PF08645 Polynucleotide kinase 3 phosphatase I3X05_11100 PF00475 Imidazoleglycerol-phosphate dehydratase I3X05_11105 PF00155 Aminotransferase class I and II I3X05_11110 PF00815 Histidinol dehydrogenase I3X05_11115 PF01634 ATP phosphoribosyltransferase I3X05_11115 PF08029 HisG, C-terminal domain I3X05_11120 PF03553 Na+/H+ antiporter family I3X05_11125 PF00816 H-NS histone family I3X05_11130 PF00294 pfkB family carbohydrate kinase I3X05_11145 PF04356 Protein of unknown function (DUF489) I3X05_11150 PF00206 Lyase I3X05_11150 PF08328 Adenylosuccinate lyase C-terminal I3X05_11160 PF16036 Chalcone isomerase-like I3X05_11185 PF00106 short chain dehydrogenase I3X05_11195 PF01435 Peptidase family M48 I3X05_11210 PF08241 Methyltransferase domain I3X05_11215 PF00155 Aminotransferase class I and II I3X05_11220 PF04055 Radical SAM superfamily I3X05_11220 PF06968 Biotin and Thiamin Synthesis associated domain I3X05_11225 PF00202 Aminotransferase class-III I3X05_11230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) I3X05_11230 PF02403 Seryl-tRNA synthetase N-terminal domain I3X05_11235 PF12002 MgsA AAA+ ATPase C terminal I3X05_11235 PF16193 AAA C-terminal domain I3X05_11235 PF00004 ATPase family associated with various cellular activities (AAA) I3X05_11240 PF03548 Outer membrane lipoprotein carrier protein LolA I3X05_11245 PF17854 FtsK alpha domain I3X05_11245 PF09397 Ftsk gamma domain I3X05_11245 PF01580 FtsK/SpoIIIE family I3X05_11245 PF13491 4TM region of DNA translocase FtsK/SpoIIIE I3X05_11250 PF01037 Lrp/AsnC ligand binding domain I3X05_11255 PF01262 Alanine dehydrogenase/PNT, C-terminal domain I3X05_11255 PF05222 Alanine dehydrogenase/PNT, N-terminal domain I3X05_11265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_11265 PF03466 LysR substrate binding domain I3X05_11275 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) I3X05_11290 PF00005 ABC transporter I3X05_11290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_11295 PF00005 ABC transporter I3X05_11295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_11300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle I3X05_11305 PF12911 N-terminal TM domain of oligopeptide transport permease C I3X05_11305 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_11310 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_11315 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family I3X05_11320 PF18073 Rubredoxin metal binding domain I3X05_11325 PF06305 Lipopolysaccharide assembly protein A domain I3X05_11330 PF00216 Bacterial DNA-binding protein I3X05_11335 PF00575 S1 RNA binding domain I3X05_11340 PF02224 Cytidylate kinase I3X05_11345 PF01343 Peptidase family S49 I3X05_11345 PF08496 Peptidase family S49 N-terminal I3X05_11350 PF00106 short chain dehydrogenase I3X05_11365 PF07733 Bacterial DNA polymerase III alpha NTPase domain I3X05_11365 PF17657 Bacterial DNA polymerase III alpha subunit finger domain I3X05_11365 PF14579 Helix-hairpin-helix motif I3X05_11365 PF02811 PHP domain I3X05_11365 PF01336 OB-fold nucleic acid binding domain I3X05_11370 PF00072 Response regulator receiver domain I3X05_11370 PF01584 CheW-like domain I3X05_11375 PF00480 ROK family I3X05_11380 PF02887 Pyruvate kinase, alpha/beta domain I3X05_11380 PF00224 Pyruvate kinase, barrel domain I3X05_11385 PF01734 Patatin-like phospholipase I3X05_11400 PF00209 Sodium:neurotransmitter symporter family I3X05_11410 PF13007 Transposase C of IS166 homeodomain I3X05_11410 PF13817 IS66 C-terminal element I3X05_11410 PF03050 Transposase IS66 family I3X05_11410 PF13005 zinc-finger binding domain of transposase IS66 I3X05_11420 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) I3X05_11420 PF01348 Type II intron maturase I3X05_11435 PF00367 phosphotransferase system, EIIB I3X05_11435 PF02378 Phosphotransferase system, EIIC I3X05_11440 PF01026 TatD related DNase I3X05_11445 PF09115 DNA polymerase III, delta subunit, C terminal I3X05_11450 PF02223 Thymidylate kinase I3X05_11455 PF02618 YceG-like family I3X05_11460 PF01063 Amino-transferase class IV I3X05_11465 PF02801 Beta-ketoacyl synthase, C-terminal domain I3X05_11465 PF00109 Beta-ketoacyl synthase, N-terminal domain I3X05_11470 PF00550 Phosphopantetheine attachment site I3X05_11480 PF00698 Acyl transferase domain I3X05_11485 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III I3X05_11485 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal I3X05_11490 PF02504 Fatty acid synthesis protein I3X05_11495 PF01783 Ribosomal L32p protein family I3X05_11500 PF02620 Large ribosomal RNA subunit accumulation protein YceD I3X05_11505 PF02545 Maf-like protein I3X05_11510 PF00849 RNA pseudouridylate synthase I3X05_11510 PF01479 S4 domain I3X05_11515 PF10150 Ribonuclease E/G family I3X05_11515 PF00575 S1 RNA binding domain I3X05_11515 PF12111 Polyribonucleotide phosphorylase C terminal I3X05_11520 PF01451 Low molecular weight phosphotyrosine protein phosphatase I3X05_11525 PF12557 Cob(I)alamin adenosyltransferase N terminal I3X05_11525 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP I3X05_11535 PF00485 Phosphoribulokinase / Uridine kinase family I3X05_11540 PF10609 NUBPL iron-transfer P-loop NTPase I3X05_11545 PF01588 Putative tRNA binding domain I3X05_11545 PF09334 tRNA synthetases class I (M) I3X05_11555 PF00392 Bacterial regulatory proteins, gntR family I3X05_11555 PF07840 FadR C-terminal domain I3X05_11560 PF06450 Bacterial Na+/H+ antiporter B (NhaB) I3X05_11565 PF02600 Disulfide bond formation protein DsbB I3X05_11570 PF07516 SecA Wing and Scaffold domain I3X05_11570 PF07517 SecA DEAD-like domain I3X05_11570 PF01043 SecA preprotein cross-linking domain I3X05_11570 PF02810 SEC-C motif I3X05_11575 PF01207 Dihydrouridine synthase (Dus) I3X05_11580 PF00128 Alpha amylase, catalytic domain I3X05_11580 PF02903 Alpha amylase, N-terminal ig-like domain I3X05_11585 PF00005 ABC transporter I3X05_11590 PF02653 Branched-chain amino acid transport system / permease component I3X05_11600 PF04217 Protein of unknown function, DUF412 I3X05_11605 PF00871 Acetokinase family I3X05_11610 PF07085 DRTGG domain I3X05_11610 PF01515 Phosphate acetyl/butaryl transferase I3X05_11620 PF13409 Glutathione S-transferase, N-terminal domain I3X05_11625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_11625 PF00005 ABC transporter I3X05_11630 PF00005 ABC transporter I3X05_11630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_11635 PF12911 N-terminal TM domain of oligopeptide transport permease C I3X05_11635 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_11640 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_11645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle I3X05_11650 PF02391 MoaE protein I3X05_11655 PF02597 ThiS family I3X05_11660 PF01967 MoaC family I3X05_11665 PF00994 Probable molybdopterin binding domain I3X05_11670 PF06463 Molybdenum Cofactor Synthesis C I3X05_11670 PF04055 Radical SAM superfamily I3X05_11675 PF01933 Uncharacterised protein family UPF0052 I3X05_11680 PF01627 Hpt domain I3X05_11685 PF02954 Bacterial regulatory protein, Fis family I3X05_11685 PF00072 Response regulator receiver domain I3X05_11685 PF00158 Sigma-54 interaction domain I3X05_11690 PF12344 Ultra-violet resistance protein B I3X05_11690 PF02151 UvrB/uvrC motif I3X05_11690 PF04851 Type III restriction enzyme, res subunit I3X05_11690 PF17757 UvrB interaction domain I3X05_11690 PF00271 Helicase conserved C-terminal domain I3X05_11700 PF07690 Major Facilitator Superfamily I3X05_11705 PF00529 HlyD membrane-fusion protein of T1SS I3X05_11705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion I3X05_11715 PF02508 Rnf-Nqr subunit, membrane protein I3X05_11720 PF04060 Putative Fe-S cluster I3X05_11725 PF13375 RnfC Barrel sandwich hybrid domain I3X05_11725 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit I3X05_11725 PF12838 4Fe-4S dicluster domain I3X05_11725 PF10531 SLBB domain I3X05_11730 PF03116 NQR2, RnfD, RnfE family I3X05_11735 PF04205 FMN-binding domain I3X05_11740 PF02508 Rnf-Nqr subunit, membrane protein I3X05_11745 PF10576 Iron-sulfur binding domain of endonuclease III I3X05_11745 PF00633 Helix-hairpin-helix motif I3X05_11745 PF00730 HhH-GPD superfamily base excision DNA repair protein I3X05_11750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily I3X05_11755 PF10952 Protein of unknown function (DUF2753) I3X05_11760 PF00691 OmpA family I3X05_11760 PF18393 MotY N-terminal domain I3X05_11765 PF00929 Exonuclease I3X05_11770 PF13726 Na+-H+ antiporter family I3X05_11770 PF03553 Na+/H+ antiporter family I3X05_11780 PF00462 Glutaredoxin I3X05_11785 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain I3X05_11785 PF02777 Iron/manganese superoxide dismutases, C-terminal domain I3X05_11800 PF00465 Iron-containing alcohol dehydrogenase I3X05_11800 PF00171 Aldehyde dehydrogenase family I3X05_11805 PF01914 MarC family integral membrane protein I3X05_11825 PF01118 Semialdehyde dehydrogenase, NAD binding domain I3X05_11825 PF02774 Semialdehyde dehydrogenase, dimerisation domain I3X05_11830 PF03553 Na+/H+ antiporter family I3X05_11840 PF04245 37-kD nucleoid-associated bacterial protein I3X05_11845 PF07208 Protein of unknown function (DUF1414) I3X05_11850 PF00884 Sulfatase I3X05_11850 PF11893 Domain of unknown function (DUF3413) I3X05_11855 PF13545 Crp-like helix-turn-helix domain I3X05_11855 PF00027 Cyclic nucleotide-binding domain I3X05_11870 PF00672 HAMP domain I3X05_11870 PF12729 Four helix bundle sensory module for signal transduction I3X05_11870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_11875 PF00850 Histone deacetylase domain I3X05_11880 PF01751 Toprim domain I3X05_11880 PF01131 DNA topoisomerase I3X05_11885 PF00881 Nitroreductase family I3X05_11890 PF07992 Pyridine nucleotide-disulphide oxidoreductase I3X05_11890 PF00724 NADH:flavin oxidoreductase / NADH oxidase family I3X05_11895 PF01343 Peptidase family S49 I3X05_11900 PF17763 Glutaminase/Asparaginase C-terminal domain I3X05_11900 PF00710 Asparaginase, N-terminal I3X05_11905 PF07023 Protein of unknown function (DUF1315) I3X05_11915 PF01641 SelR domain I3X05_11920 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain I3X05_11920 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain I3X05_11925 PF01263 Aldose 1-epimerase I3X05_11940 PF00962 Adenosine/AMP deaminase I3X05_11955 PF01053 Cys/Met metabolism PLP-dependent enzyme I3X05_11965 PF01769 Divalent cation transporter I3X05_11965 PF00571 CBS domain I3X05_11965 PF03448 MgtE intracellular N domain I3X05_11995 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain I3X05_11995 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain I3X05_12000 PF13847 Methyltransferase domain I3X05_12015 PF00245 Alkaline phosphatase I3X05_12020 PF03692 Putative zinc- or iron-chelating domain I3X05_12025 PF03692 Putative zinc- or iron-chelating domain I3X05_12030 PF00486 Transcriptional regulatory protein, C terminal I3X05_12030 PF00072 Response regulator receiver domain I3X05_12035 PF00512 His Kinase A (phospho-acceptor) domain I3X05_12035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_12035 PF00672 HAMP domain I3X05_12080 PF02132 RecR protein I3X05_12080 PF13662 Toprim domain I3X05_12085 PF02575 YbaB/EbfC DNA-binding family I3X05_12090 PF12169 DNA polymerase III subunits gamma and tau domain III I3X05_12090 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding I3X05_12090 PF12170 DNA polymerase III tau subunit V interacting with alpha I3X05_12095 PF00156 Phosphoribosyl transferase domain I3X05_12100 PF04304 Protein of unknown function (DUF454) I3X05_12105 PF00072 Response regulator receiver domain I3X05_12110 PF03466 LysR substrate binding domain I3X05_12110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_12115 PF00156 Phosphoribosyl transferase domain I3X05_12120 PF02674 Colicin V production protein I3X05_12125 PF05036 Sporulation related domain I3X05_12130 PF08245 Mur ligase middle domain I3X05_12130 PF02875 Mur ligase family, glutamate ligase domain I3X05_12135 PF17848 Acetyl-coA carboxylase zinc finger domain I3X05_12135 PF01039 Carboxyl transferase domain I3X05_12140 PF01416 tRNA pseudouridine synthase I3X05_12150 PF01118 Semialdehyde dehydrogenase, NAD binding domain I3X05_12150 PF02774 Semialdehyde dehydrogenase, dimerisation domain I3X05_12155 PF11890 Domain of unknown function (DUF3410) I3X05_12155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain I3X05_12155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain I3X05_12160 PF02801 Beta-ketoacyl synthase, C-terminal domain I3X05_12160 PF00109 Beta-ketoacyl synthase, N-terminal domain I3X05_12165 PF05430 S-adenosyl-L-methionine-dependent methyltransferase I3X05_12165 PF01266 FAD dependent oxidoreductase I3X05_12175 PF08891 YfcL protein I3X05_12180 PF04315 Elongation factor P hydroxylase I3X05_12185 PF03458 UPF0126 domain I3X05_12190 PF01264 Chorismate synthase I3X05_12195 PF05175 Methyltransferase small domain I3X05_12200 PF01713 Smr domain I3X05_12205 PF00300 Histidine phosphatase superfamily (branch 1) I3X05_12210 PF05193 Peptidase M16 inactive domain I3X05_12210 PF00675 Insulinase (Peptidase family M16) I3X05_12215 PF00378 Enoyl-CoA hydratase/isomerase I3X05_12215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain I3X05_12215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain I3X05_12220 PF00108 Thiolase, N-terminal domain I3X05_12220 PF02803 Thiolase, C-terminal domain I3X05_12225 PF08281 Sigma-70, region 4 I3X05_12225 PF04542 Sigma-70 region 2 I3X05_12235 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) I3X05_12240 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) I3X05_12245 PF04333 MlaA lipoprotein I3X05_12250 PF03918 Cytochrome C biogenesis protein I3X05_12255 PF03918 Cytochrome C biogenesis protein I3X05_12260 PF08534 Redoxin I3X05_12265 PF01578 Cytochrome C assembly protein I3X05_12265 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal I3X05_12270 PF03100 CcmE I3X05_12275 PF04995 Heme exporter protein D (CcmD) I3X05_12280 PF01578 Cytochrome C assembly protein I3X05_12285 PF03379 CcmB protein I3X05_12290 PF00005 ABC transporter I3X05_12300 PF01584 CheW-like domain I3X05_12310 PF13614 AAA domain I3X05_12315 PF00072 Response regulator receiver domain I3X05_12315 PF01339 CheB methylesterase I3X05_12320 PF01627 Hpt domain I3X05_12320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_12320 PF02895 Signal transducing histidine kinase, homodimeric domain I3X05_12320 PF01584 CheW-like domain I3X05_12320 PF00072 Response regulator receiver domain I3X05_12325 PF04344 Chemotaxis phosphatase, CheZ I3X05_12330 PF00072 Response regulator receiver domain I3X05_12335 PF04539 Sigma-70 region 3 I3X05_12335 PF04542 Sigma-70 region 2 I3X05_12335 PF04545 Sigma-70, region 4 I3X05_12340 PF10609 NUBPL iron-transfer P-loop NTPase I3X05_12345 PF00448 SRP54-type protein, GTPase domain I3X05_12350 PF00771 FHIPEP family I3X05_12355 PF01312 FlhB HrpN YscU SpaS Family I3X05_12360 PF01311 Bacterial export proteins, family 1 I3X05_12365 PF01313 Bacterial export proteins, family 3 I3X05_12370 PF00813 FliP family I3X05_12375 PF04347 Flagellar biosynthesis protein, FliO I3X05_12380 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term I3X05_12385 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term I3X05_12385 PF02154 Flagellar motor switch protein FliM I3X05_12405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain I3X05_12405 PF18269 T3SS EscN ATPase C-terminal domain I3X05_12415 PF14842 FliG N-terminal domain I3X05_12415 PF14841 FliG middle domain I3X05_12415 PF01706 FliG C-terminal domain I3X05_12420 PF08345 Flagellar M-ring protein C-terminal I3X05_12420 PF01514 Secretory protein of YscJ/FliF family I3X05_12425 PF02049 Flagellar hook-basal body complex protein FliE I3X05_12430 PF00072 Response regulator receiver domain I3X05_12430 PF02954 Bacterial regulatory protein, Fis family I3X05_12430 PF00158 Sigma-54 interaction domain I3X05_12435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_12435 PF13188 PAS domain I3X05_12435 PF00512 His Kinase A (phospho-acceptor) domain I3X05_12440 PF06490 Flagellar regulatory protein FleQ I3X05_12440 PF00158 Sigma-54 interaction domain I3X05_12440 PF02954 Bacterial regulatory protein, Fis family I3X05_12445 PF02561 Flagellar protein FliS I3X05_12455 PF02465 Flagellar hook-associated protein 2 N-terminus I3X05_12455 PF07196 Flagellin hook IN motif I3X05_12455 PF07195 Flagellar hook-associated protein 2 C-terminus I3X05_12460 PF03646 FlaG protein I3X05_12465 PF07196 Flagellin hook IN motif I3X05_12465 PF00700 Bacterial flagellin C-terminal helical region I3X05_12465 PF00669 Bacterial flagellin N-terminal helical region I3X05_12470 PF00669 Bacterial flagellin N-terminal helical region I3X05_12470 PF07196 Flagellin hook IN motif I3X05_12470 PF00700 Bacterial flagellin C-terminal helical region I3X05_12475 PF00669 Bacterial flagellin N-terminal helical region I3X05_12475 PF00700 Bacterial flagellin C-terminal helical region I3X05_12475 PF07196 Flagellin hook IN motif I3X05_12480 PF04261 Dyp-type peroxidase family I3X05_12485 PF11143 Protein of unknown function (DUF2919) I3X05_12510 PF03960 ArsC family I3X05_12515 PF07687 Peptidase dimerisation domain I3X05_12515 PF01546 Peptidase family M20/M25/M40 I3X05_12535 PF06804 NlpB/DapX lipoprotein I3X05_12540 PF00701 Dihydrodipicolinate synthetase family I3X05_12545 PF01842 ACT domain I3X05_12550 PF00578 AhpC/TSA family I3X05_12555 PF01594 AI-2E family transporter I3X05_12565 PF13181 Tetratricopeptide repeat I3X05_12565 PF01435 Peptidase family M48 I3X05_12570 PF03960 ArsC family I3X05_12575 PF03358 NADPH-dependent FMN reductase I3X05_12590 PF00860 Permease family I3X05_12600 PF00586 AIR synthase related protein, N-terminal domain I3X05_12600 PF02769 AIR synthase related protein, C-terminal domain I3X05_12605 PF00551 Formyl transferase I3X05_12610 PF13230 Glutamine amidotransferases class-II I3X05_12615 PF13580 SIS domain I3X05_12620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain I3X05_12620 PF09317 Domain of unknown function (DUF1974) I3X05_12620 PF02770 Acyl-CoA dehydrogenase, middle domain I3X05_12620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain I3X05_12630 PF00929 Exonuclease I3X05_12635 PF00075 RNase H I3X05_12640 PF08241 Methyltransferase domain I3X05_12645 PF16123 Hydroxyacylglutathione hydrolase C-terminus I3X05_12645 PF00753 Metallo-beta-lactamase superfamily I3X05_12650 PF01464 Transglycosylase SLT domain I3X05_12650 PF01476 LysM domain I3X05_12660 PF03372 Endonuclease/Exonuclease/phosphatase family I3X05_12665 PF00543 Nitrogen regulatory protein P-II I3X05_12670 PF00034 Cytochrome c I3X05_12675 PF09179 TilS substrate binding domain I3X05_12675 PF01171 PP-loop family I3X05_12675 PF11734 TilS substrate C-terminal domain I3X05_12680 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit I3X05_12685 PF14579 Helix-hairpin-helix motif I3X05_12685 PF17657 Bacterial DNA polymerase III alpha subunit finger domain I3X05_12685 PF02811 PHP domain I3X05_12685 PF01336 OB-fold nucleic acid binding domain I3X05_12685 PF07733 Bacterial DNA polymerase III alpha NTPase domain I3X05_12690 PF01351 Ribonuclease HII I3X05_12695 PF02684 Lipid-A-disaccharide synthetase I3X05_12700 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 I3X05_12700 PF00132 Bacterial transferase hexapeptide (six repeats) I3X05_12705 PF07977 FabA-like domain I3X05_12710 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD I3X05_12710 PF00132 Bacterial transferase hexapeptide (six repeats) I3X05_12715 PF03938 Outer membrane protein (OmpH-like) I3X05_12720 PF01103 Surface antigen I3X05_12720 PF07244 Surface antigen variable number repeat I3X05_12725 PF02163 Peptidase family M50 I3X05_12725 PF17820 PDZ domain I3X05_12730 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain I3X05_12730 PF13288 DXP reductoisomerase C-terminal domain I3X05_12730 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase I3X05_12740 PF01255 Putative undecaprenyl diphosphate synthase I3X05_12745 PF01765 Ribosome recycling factor I3X05_12750 PF00696 Amino acid kinase family I3X05_12755 PF00889 Elongation factor TS I3X05_12760 PF00318 Ribosomal protein S2 I3X05_12765 PF00557 Metallopeptidase family M24 I3X05_12770 PF01966 HD domain I3X05_12770 PF01909 Nucleotidyltransferase domain I3X05_12770 PF08335 GlnD PII-uridylyltransferase I3X05_12775 PF11944 Protein of unknown function (DUF3461) I3X05_12780 PF00849 RNA pseudouridylate synthase I3X05_12785 PF04287 tRNA pseudouridine synthase C I3X05_12810 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 I3X05_12815 PF03806 AbgT putative transporter family I3X05_12820 PF00444 Ribosomal protein L36 I3X05_12825 PF01197 Ribosomal protein L31 I3X05_12830 PF18389 TrmO C-terminal domain I3X05_12830 PF01980 tRNA-methyltransferase O I3X05_12835 PF04073 Aminoacyl-tRNA editing domain I3X05_12835 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) I3X05_12835 PF03129 Anticodon binding domain I3X05_12840 PF06786 Uncharacterised protein family (UPF0253) I3X05_12855 PF07995 Glucose / Sorbosone dehydrogenase I3X05_12860 PF00704 Glycosyl hydrolases family 18 I3X05_12875 PF13808 DDE_Tnp_1-associated I3X05_12875 PF01609 Transposase DDE domain I3X05_12885 PF02839 Carbohydrate binding domain I3X05_12885 PF00150 Cellulase (glycosyl hydrolase family 5) I3X05_12890 PF13808 DDE_Tnp_1-associated I3X05_12890 PF01609 Transposase DDE domain I3X05_12935 PF13340 Putative transposase of IS4/5 family (DUF4096) I3X05_12950 PF00199 Catalase I3X05_12950 PF06628 Catalase-related immune-responsive I3X05_12960 PF02917 Pertussis toxin, subunit 1 I3X05_12970 PF03466 LysR substrate binding domain I3X05_12970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_13010 PF00691 OmpA family I3X05_13010 PF01389 OmpA-like transmembrane domain I3X05_13025 PF01389 OmpA-like transmembrane domain I3X05_13025 PF00691 OmpA family I3X05_13055 PF02753 Pili assembly chaperone PapD, C-terminal domain I3X05_13055 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain I3X05_13060 PF13953 PapC C-terminal domain I3X05_13060 PF00577 Outer membrane usher protein I3X05_13060 PF13954 PapC N-terminal domain I3X05_13065 PF13488 Glycine zipper I3X05_13065 PF00691 OmpA family I3X05_13130 PF01389 OmpA-like transmembrane domain I3X05_13130 PF00691 OmpA family I3X05_13135 PF00701 Dihydrodipicolinate synthetase family I3X05_13140 PF00596 Class II Aldolase and Adducin N-terminal domain I3X05_13145 PF00392 Bacterial regulatory proteins, gntR family I3X05_13145 PF00155 Aminotransferase class I and II I3X05_13200 PF00209 Sodium:neurotransmitter symporter family I3X05_13210 PF09382 RQC domain I3X05_13210 PF16124 RecQ zinc-binding I3X05_13210 PF00271 Helicase conserved C-terminal domain I3X05_13210 PF00570 HRDC domain I3X05_13210 PF00270 DEAD/DEAH box helicase I3X05_13215 PF11799 impB/mucB/samB family C-terminal domain I3X05_13215 PF00817 impB/mucB/samB family I3X05_13230 PF02424 ApbE family I3X05_13235 PF00111 2Fe-2S iron-sulfur cluster binding domain I3X05_13235 PF00970 Oxidoreductase FAD-binding domain I3X05_13235 PF00175 Oxidoreductase NAD-binding domain I3X05_13240 PF02508 Rnf-Nqr subunit, membrane protein I3X05_13245 PF02508 Rnf-Nqr subunit, membrane protein I3X05_13250 PF04205 FMN-binding domain I3X05_13255 PF03116 NQR2, RnfD, RnfE family I3X05_13260 PF11973 NQRA C-terminal domain I3X05_13260 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) I3X05_13265 PF01722 BolA-like protein I3X05_13270 PF05175 Methyltransferase small domain I3X05_13280 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD I3X05_13285 PF07690 Major Facilitator Superfamily I3X05_13295 PF04545 Sigma-70, region 4 I3X05_13295 PF04542 Sigma-70 region 2 I3X05_13305 PF03502 Nucleoside-specific channel-forming protein, Tsx I3X05_13310 PF02558 Ketopantoate reductase PanE/ApbA I3X05_13310 PF08546 Ketopantoate reductase PanE/ApbA C terminal I3X05_13315 PF01965 DJ-1/PfpI family I3X05_13320 PF00266 Aminotransferase class-V I3X05_13325 PF02657 Fe-S metabolism associated domain I3X05_13330 PF00899 ThiF family I3X05_13335 PF03562 MltA specific insert domain I3X05_13335 PF06725 3D domain I3X05_13345 PF00696 Amino acid kinase family I3X05_13345 PF00583 Acetyltransferase (GNAT) family I3X05_13355 PF13538 UvrD-like helicase C-terminal domain I3X05_13360 PF13361 UvrD-like helicase C-terminal domain I3X05_13360 PF00580 UvrD/REP helicase N-terminal domain I3X05_13360 PF12705 PD-(D/E)XK nuclease superfamily I3X05_13365 PF17946 RecC C-terminal domain I3X05_13370 PF00884 Sulfatase I3X05_13370 PF11893 Domain of unknown function (DUF3413) I3X05_13380 PF03466 LysR substrate binding domain I3X05_13380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_13385 PF07130 YebG protein I3X05_13390 PF14602 Hexapeptide repeat of succinyl-transferase I3X05_13390 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle I3X05_13395 PF00230 Major intrinsic protein I3X05_13400 PF02782 FGGY family of carbohydrate kinases, C-terminal domain I3X05_13400 PF00370 FGGY family of carbohydrate kinases, N-terminal domain I3X05_13405 PF08220 DeoR-like helix-turn-helix domain I3X05_13405 PF00455 DeoR C terminal sensor domain I3X05_13410 PF16901 C-terminal domain of alpha-glycerophosphate oxidase I3X05_13410 PF01266 FAD dependent oxidoreductase I3X05_13415 PF01544 CorA-like Mg2+ transporter protein I3X05_13420 PF00583 Acetyltransferase (GNAT) family I3X05_13445 PF00672 HAMP domain I3X05_13445 PF17200 Single Cache domain 2 I3X05_13445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_13450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_13450 PF03466 LysR substrate binding domain I3X05_13455 PF02417 Chromate transporter I3X05_13460 PF00501 AMP-binding enzyme I3X05_13470 PF03764 Elongation factor G, domain IV I3X05_13470 PF14492 Elongation Factor G, domain II I3X05_13470 PF00679 Elongation factor G C-terminus I3X05_13470 PF03144 Elongation factor Tu domain 2 I3X05_13470 PF00009 Elongation factor Tu GTP binding domain I3X05_13475 PF18073 Rubredoxin metal binding domain I3X05_13485 PF18429 Domain of unknown function (DUF5609) I3X05_13495 PF01048 Phosphorylase superfamily I3X05_13500 PF01676 Metalloenzyme superfamily I3X05_13505 PF00591 Glycosyl transferase family, a/b domain I3X05_13505 PF02885 Glycosyl transferase family, helical bundle domain I3X05_13505 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain I3X05_13510 PF01791 DeoC/LacD family aldolase I3X05_13515 PF07670 Nucleoside recognition I3X05_13515 PF07662 Na+ dependent nucleoside transporter C-terminus I3X05_13515 PF01773 Na+ dependent nucleoside transporter N-terminus I3X05_13520 PF01026 TatD related DNase I3X05_13530 PF00009 Elongation factor Tu GTP binding domain I3X05_13530 PF03144 Elongation factor Tu domain 2 I3X05_13530 PF16658 Class II release factor RF3, C-terminal domain I3X05_13535 PF00563 EAL domain I3X05_13535 PF00990 Diguanylate cyclase, GGDEF domain I3X05_13535 PF03707 Bacterial signalling protein N terminal repeat I3X05_13550 PF13508 Acetyltransferase (GNAT) domain I3X05_13555 PF02036 SCP-2 sterol transfer family I3X05_13560 PF00563 EAL domain I3X05_13560 PF00990 Diguanylate cyclase, GGDEF domain I3X05_13560 PF03707 Bacterial signalling protein N terminal repeat I3X05_13565 PF01136 Peptidase family U32 I3X05_13570 PF01136 Peptidase family U32 I3X05_13575 PF01554 MatE I3X05_13580 PF01047 MarR family I3X05_13585 PF13181 Tetratricopeptide repeat I3X05_13585 PF07719 Tetratricopeptide repeat I3X05_13590 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain I3X05_13590 PF03725 3' exoribonuclease family, domain 2 I3X05_13590 PF00575 S1 RNA binding domain I3X05_13590 PF00013 KH domain I3X05_13590 PF01138 3' exoribonuclease family, domain 1 I3X05_13595 PF00312 Ribosomal protein S15 I3X05_13600 PF09157 Pseudouridine synthase II TruB, C-terminal I3X05_13600 PF01509 TruB family pseudouridylate synthase (N terminal domain) I3X05_13600 PF16198 tRNA pseudouridylate synthase B C-terminal domain I3X05_13605 PF02033 Ribosome-binding factor A I3X05_13610 PF00009 Elongation factor Tu GTP binding domain I3X05_13610 PF11987 Translation-initiation factor 2 I3X05_13610 PF08364 Bacterial translation initiation factor IF-2 associated region I3X05_13610 PF04760 Translation initiation factor IF-2, N-terminal region I3X05_13615 PF00575 S1 RNA binding domain I3X05_13615 PF08529 NusA N-terminal domain I3X05_13615 PF13184 NusA-like KH domain I3X05_13620 PF17384 RimP C-terminal SH3 domain I3X05_13620 PF02576 RimP N-terminal domain I3X05_13635 PF03840 Preprotein translocase SecG subunit I3X05_13640 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III I3X05_13640 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I I3X05_13640 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain I3X05_13640 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II I3X05_13645 PF00809 Pterin binding enzyme I3X05_13650 PF00004 ATPase family associated with various cellular activities (AAA) I3X05_13650 PF17862 AAA+ lid domain I3X05_13650 PF01434 Peptidase family M41 I3X05_13650 PF06480 FtsH Extracellular I3X05_13655 PF01728 FtsJ-like methyltransferase I3X05_13660 PF01985 CRS1 / YhbY (CRM) domain I3X05_13665 PF01272 Transcription elongation factor, GreA/GreB, C-term I3X05_13665 PF03449 Transcription elongation factor, N-terminal I3X05_13670 PF13609 Gram-negative porin I3X05_13675 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family I3X05_13680 PF00579 tRNA synthetases class I (W and Y) I3X05_13685 PF08525 Opacity-associated protein A N-terminal motif I3X05_13685 PF01476 LysM domain I3X05_13685 PF01551 Peptidase family M23 I3X05_13690 PF00873 AcrB/AcrD/AcrF family I3X05_13695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion I3X05_13700 PF01521 Iron-sulphur cluster biosynthesis I3X05_13705 PF00202 Aminotransferase class-III I3X05_13710 PF01594 AI-2E family transporter I3X05_13715 PF08468 Methyltransferase small domain N-terminal I3X05_13715 PF05175 Methyltransferase small domain I3X05_13720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_13720 PF09308 LuxQ, periplasmic I3X05_13720 PF00512 His Kinase A (phospho-acceptor) domain I3X05_13720 PF00072 Response regulator receiver domain I3X05_13725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle I3X05_13730 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_13735 PF12911 N-terminal TM domain of oligopeptide transport permease C I3X05_13735 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_13740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_13740 PF00005 ABC transporter I3X05_13745 PF00005 ABC transporter I3X05_13745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_13755 PF01869 BadF/BadG/BcrA/BcrD ATPase family I3X05_13760 PF02838 Glycosyl hydrolase family 20, domain 2 I3X05_13760 PF00728 Glycosyl hydrolase family 20, catalytic domain I3X05_13765 PF06165 Glycosyltransferase family 36 I3X05_13765 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain I3X05_13770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain I3X05_13770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III I3X05_13770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I I3X05_13770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II I3X05_13775 PF08402 TOBE domain I3X05_13775 PF00005 ABC transporter I3X05_13780 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_13785 PF13416 Bacterial extracellular solute-binding protein I3X05_13790 PF00909 Ammonium Transporter Family I3X05_13795 PF00543 Nitrogen regulatory protein P-II I3X05_13800 PF07715 TonB-dependent Receptor Plug Domain I3X05_13800 PF00593 TonB dependent receptor I3X05_13805 PF00512 His Kinase A (phospho-acceptor) domain I3X05_13805 PF16750 Sensor domain of 2-component histidine kinase I3X05_13805 PF00672 HAMP domain I3X05_13805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_13810 PF00486 Transcriptional regulatory protein, C terminal I3X05_13810 PF00072 Response regulator receiver domain I3X05_13820 PF00950 ABC 3 transport family I3X05_13825 PF00005 ABC transporter I3X05_13860 PF06062 Uncharacterised protein family (UPF0231) I3X05_13865 PF02595 Glycerate kinase family I3X05_13870 PF00330 Aconitase family (aconitate hydratase) I3X05_13870 PF06434 Aconitate hydratase 2 N-terminus I3X05_13870 PF11791 Aconitate B N-terminal domain I3X05_13875 PF01734 Patatin-like phospholipase I3X05_13880 PF14814 Bifunctional transglycosylase second domain I3X05_13880 PF00912 Transglycosylase I3X05_13880 PF00905 Penicillin binding protein transpeptidase domain I3X05_13885 PF08482 ATP-dependent helicase C-terminal I3X05_13885 PF00270 DEAD/DEAH box helicase I3X05_13885 PF04408 Helicase associated domain (HA2) I3X05_13885 PF00271 Helicase conserved C-terminal domain I3X05_13890 PF03749 Sugar fermentation stimulation protein RE domain I3X05_13890 PF17746 SfsA N-terminal OB domain I3X05_13895 PF01258 Prokaryotic dksA/traR C4-type zinc finger I3X05_13900 PF00749 tRNA synthetases class I (E and Q), catalytic domain I3X05_13905 PF01743 Poly A polymerase head domain I3X05_13905 PF12627 Probable RNA and SrmB- binding site of polymerase A I3X05_13905 PF12626 Polymerase A arginine-rich C-terminus I3X05_13910 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) I3X05_13915 PF02548 Ketopantoate hydroxymethyltransferase I3X05_13920 PF02569 Pantoate-beta-alanine ligase I3X05_13925 PF01061 ABC-2 type transporter I3X05_13930 PF00005 ABC transporter I3X05_13935 PF00916 Sulfate permease family I3X05_13935 PF01740 STAS domain I3X05_13940 PF00484 Carbonic anhydrase I3X05_13945 PF00156 Phosphoribosyl transferase domain I3X05_13950 PF00440 Bacterial regulatory proteins, tetR family I3X05_13955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain I3X05_13955 PF07992 Pyridine nucleotide-disulphide oxidoreductase I3X05_13960 PF02817 e3 binding domain I3X05_13960 PF00364 Biotin-requiring enzyme I3X05_13960 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) I3X05_13965 PF00456 Transketolase, thiamine diphosphate binding domain I3X05_13965 PF17831 Pyruvate dehydrogenase E1 component middle domain I3X05_13970 PF07729 FCD domain I3X05_13970 PF00392 Bacterial regulatory proteins, gntR family I3X05_13975 PF01510 N-acetylmuramoyl-L-alanine amidase I3X05_13980 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain I3X05_13980 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain I3X05_13985 PF07963 Prokaryotic N-terminal methylation motif I3X05_13985 PF00114 Pilin (bacterial filament) I3X05_13990 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain I3X05_13990 PF00437 Type II/IV secretion system protein I3X05_13995 PF00482 Type II secretion system (T2SS), protein F I3X05_14000 PF01478 Type IV leader peptidase family I3X05_14000 PF06750 Bacterial Peptidase A24 N-terminal domain I3X05_14005 PF01121 Dephospho-CoA kinase I3X05_14010 PF07072 Cell division protein I3X05_14015 PF03884 DNA gyrase inhibitor YacG I3X05_14020 PF01245 Ribosomal protein L19 I3X05_14025 PF01746 tRNA (Guanine-1)-methyltransferase I3X05_14030 PF01782 RimM N-terminal domain I3X05_14030 PF05239 PRC-barrel domain I3X05_14035 PF00886 Ribosomal protein S16 I3X05_14040 PF02881 SRP54-type protein, helical bundle domain I3X05_14040 PF02978 Signal peptide binding domain I3X05_14040 PF00448 SRP54-type protein, GTPase domain I3X05_14045 PF01578 Cytochrome C assembly protein I3X05_14050 PF03471 Transporter associated domain I3X05_14050 PF01595 Cyclin M transmembrane N-terminal domain I3X05_14050 PF00571 CBS domain I3X05_14055 PF02664 S-Ribosylhomocysteinase (LuxS) I3X05_14065 PF04262 Glutamate-cysteine ligase I3X05_14070 PF05193 Peptidase M16 inactive domain I3X05_14070 PF00675 Insulinase (Peptidase family M16) I3X05_14075 PF09335 SNARE associated Golgi protein I3X05_14080 PF00107 Zinc-binding dehydrogenase I3X05_14080 PF08240 Alcohol dehydrogenase GroES-like domain I3X05_14085 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit I3X05_14090 PF00364 Biotin-requiring enzyme I3X05_14090 PF00682 HMGL-like I3X05_14090 PF02436 Conserved carboxylase domain I3X05_14095 PF04277 Oxaloacetate decarboxylase, gamma chain I3X05_14140 PF02599 Global regulator protein family I3X05_14145 PF01842 ACT domain I3X05_14145 PF13840 ACT domain I3X05_14145 PF00696 Amino acid kinase family I3X05_14150 PF01411 tRNA synthetases class II (A) I3X05_14150 PF02272 DHHA1 domain I3X05_14150 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain I3X05_14155 PF02631 RecX family I3X05_14160 PF00154 recA bacterial DNA recombination protein I3X05_14165 PF02464 Competence-damaged protein I3X05_14170 PF00488 MutS domain V I3X05_14170 PF05188 MutS domain II I3X05_14170 PF05192 MutS domain III I3X05_14170 PF05190 MutS family domain IV I3X05_14170 PF01624 MutS domain I I3X05_14175 PF04545 Sigma-70, region 4 I3X05_14175 PF04539 Sigma-70 region 3 I3X05_14175 PF00140 Sigma-70 factor, region 1.2 I3X05_14175 PF04542 Sigma-70 region 2 I3X05_14180 PF01476 LysM domain I3X05_14180 PF01551 Peptidase family M23 I3X05_14190 PF01975 Survival protein SurE I3X05_14195 PF01142 tRNA pseudouridine synthase D (TruD) I3X05_14200 PF02542 YgbB family I3X05_14205 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase I3X05_14210 PF04977 Septum formation initiator I3X05_14215 PF00113 Enolase, C-terminal TIM barrel domain I3X05_14215 PF03952 Enolase, N-terminal domain I3X05_14220 PF00117 Glutamine amidotransferase class-I I3X05_14220 PF06418 CTP synthase N-terminus I3X05_14225 PF03819 MazG nucleotide pyrophosphohydrolase domain I3X05_14230 PF13291 ACT domain I3X05_14230 PF02824 TGS domain I3X05_14230 PF04607 Region found in RelA / SpoT proteins I3X05_14235 PF05958 tRNA (Uracil-5-)-methyltransferase I3X05_14235 PF01938 TRAM domain I3X05_14240 PF01627 Hpt domain I3X05_14240 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) I3X05_14240 PF00512 His Kinase A (phospho-acceptor) domain I3X05_14240 PF00072 Response regulator receiver domain I3X05_14240 PF00672 HAMP domain I3X05_14240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_14245 PF01648 4'-phosphopantetheinyl transferase superfamily I3X05_14250 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ I3X05_14255 PF11967 Recombination protein O N terminal I3X05_14255 PF02565 Recombination protein O C terminal I3X05_14260 PF01926 50S ribosome-binding GTPase I3X05_14260 PF07650 KH domain I3X05_14265 PF00035 Double-stranded RNA binding motif I3X05_14265 PF14622 Ribonuclease-III-like I3X05_14270 PF10502 Signal peptidase, peptidase S26 I3X05_14275 PF03144 Elongation factor Tu domain 2 I3X05_14275 PF00009 Elongation factor Tu GTP binding domain I3X05_14275 PF00679 Elongation factor G C-terminus I3X05_14275 PF06421 GTP-binding protein LepA C-terminus I3X05_14285 PF17188 MucB/RseB C-terminal domain I3X05_14285 PF03888 MucB/RseB N-terminal domain I3X05_14290 PF03872 Anti sigma-E protein RseA, N-terminal domain I3X05_14290 PF03873 Anti sigma-E protein RseA, C-terminal domain I3X05_14295 PF04542 Sigma-70 region 2 I3X05_14295 PF08281 Sigma-70, region 4 I3X05_14300 PF00890 FAD binding domain I3X05_14300 PF02910 Fumarate reductase flavoprotein C-term I3X05_14310 PF03937 Flavinator of succinate dehydrogenase I3X05_14315 PF01571 Aminomethyltransferase folate-binding domain I3X05_14330 PF01494 FAD binding domain I3X05_14335 PF01494 FAD binding domain I3X05_14340 PF03695 Uncharacterised protein family (UPF0149) I3X05_14345 PF05164 Cell division protein ZapA I3X05_14355 PF01812 5-formyltetrahydrofolate cyclo-ligase family I3X05_14360 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) I3X05_14365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain I3X05_14365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain I3X05_14365 PF01842 ACT domain I3X05_14375 PF03466 LysR substrate binding domain I3X05_14375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_14380 PF01810 LysE type translocator I3X05_14385 PF00924 Mechanosensitive ion channel I3X05_14385 PF05552 Conserved TM helix I3X05_14390 PF01116 Fructose-bisphosphate aldolase class-II I3X05_14395 PF00162 Phosphoglycerate kinase I3X05_14400 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain I3X05_14400 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain I3X05_14405 PF02779 Transketolase, pyrimidine binding domain I3X05_14405 PF00456 Transketolase, thiamine diphosphate binding domain I3X05_14405 PF02780 Transketolase, C-terminal domain I3X05_14410 PF02773 S-adenosylmethionine synthetase, C-terminal domain I3X05_14410 PF00438 S-adenosylmethionine synthetase, N-terminal domain I3X05_14410 PF02772 S-adenosylmethionine synthetase, central domain I3X05_14415 PF10263 SprT-like family I3X05_14415 PF17283 SprT-like zinc ribbon domain I3X05_14420 PF04231 Endonuclease I I3X05_14430 PF04452 RNA methyltransferase I3X05_14435 PF02951 Prokaryotic glutathione synthetase, N-terminal domain I3X05_14435 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain I3X05_14440 PF02622 Uncharacterized ACR, COG1678 I3X05_14445 PF03652 Holliday junction resolvase I3X05_14450 PF00437 Type II/IV secretion system protein I3X05_14455 PF00437 Type II/IV secretion system protein I3X05_14460 PF01168 Alanine racemase, N-terminal domain I3X05_14465 PF03807 NADP oxidoreductase coenzyme F420-dependent I3X05_14465 PF14748 Pyrroline-5-carboxylate reductase dimerisation I3X05_14470 PF02325 YGGT family I3X05_14475 PF02594 Uncharacterised ACR, YggU family COG1872 I3X05_14485 PF01725 Ham1 family I3X05_14490 PF06969 HemN C-terminal domain I3X05_14490 PF04055 Radical SAM superfamily I3X05_14500 PF04960 Glutaminase I3X05_14505 PF02390 Putative methyltransferase I3X05_14510 PF00633 Helix-hairpin-helix motif I3X05_14510 PF00730 HhH-GPD superfamily base excision DNA repair protein I3X05_14510 PF14815 NUDIX domain I3X05_14515 PF04362 Bacterial Fe(2+) trafficking I3X05_14520 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain I3X05_14520 PF01464 Transglycosylase SLT domain I3X05_14540 PF17200 Single Cache domain 2 I3X05_14540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_14540 PF00672 HAMP domain I3X05_14575 PF00171 Aldehyde dehydrogenase family I3X05_14620 PF00313 'Cold-shock' DNA-binding domain I3X05_14625 PF00694 Aconitase C-terminal domain I3X05_14625 PF00330 Aconitase family (aconitate hydratase) I3X05_14715 PF00816 H-NS histone family I3X05_14720 PF00072 Response regulator receiver domain I3X05_14720 PF00990 Diguanylate cyclase, GGDEF domain I3X05_14790 PF03739 Lipopolysaccharide export system permease LptF/LptG I3X05_14795 PF03739 Lipopolysaccharide export system permease LptF/LptG I3X05_14800 PF02789 Cytosol aminopeptidase family, N-terminal domain I3X05_14800 PF00883 Cytosol aminopeptidase family, catalytic domain I3X05_14805 PF04364 DNA polymerase III chi subunit, HolC I3X05_14810 PF08264 Anticodon-binding domain of tRNA I3X05_14810 PF00133 tRNA synthetases class I (I, L, M and V) I3X05_14810 PF10458 Valyl tRNA synthetase tRNA binding arm I3X05_14820 PF00583 Acetyltransferase (GNAT) family I3X05_14830 PF06877 Regulator of ribonuclease activity B I3X05_14840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain I3X05_14840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain I3X05_14845 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain I3X05_14845 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain I3X05_14850 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain I3X05_14850 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain I3X05_14855 PF01042 Endoribonuclease L-PSP I3X05_14860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain I3X05_14860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain I3X05_14865 PF00849 RNA pseudouridylate synthase I3X05_14870 PF00271 Helicase conserved C-terminal domain I3X05_14870 PF12137 RNA polymerase recycling family C-terminal I3X05_14870 PF00176 SNF2 family N-terminal domain I3X05_14870 PF18337 RapA N-terminal Tudor like domain I3X05_14870 PF18339 RapA N-terminal Tudor like domain 1 I3X05_14875 PF13638 PIN domain I3X05_14875 PF02562 PhoH-like protein I3X05_14880 PF01523 Putative modulator of DNA gyrase I3X05_14885 PF00795 Carbon-nitrogen hydrolase I3X05_14890 PF13116 Protein of unknown function I3X05_14890 PF13502 AsmA-like C-terminal region I3X05_14895 PF10150 Ribonuclease E/G family I3X05_14895 PF00575 S1 RNA binding domain I3X05_14900 PF02545 Maf-like protein I3X05_14905 PF04093 rod shape-determining protein MreD I3X05_14910 PF04085 rod shape-determining protein MreC I3X05_14945 PF07963 Prokaryotic N-terminal methylation motif I3X05_14960 PF00482 Type II secretion system (T2SS), protein F I3X05_14965 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain I3X05_14965 PF00437 Type II/IV secretion system protein I3X05_14975 PF01471 Putative peptidoglycan binding domain I3X05_14975 PF13401 AAA domain I3X05_14980 PF11741 AMIN domain I3X05_14980 PF00263 Bacterial type II and III secretion system protein I3X05_14980 PF03958 Bacterial type II/III secretion system short domain I3X05_14980 PF07660 Secretin and TonB N terminus short domain I3X05_15000 PF00563 EAL domain I3X05_15000 PF00990 Diguanylate cyclase, GGDEF domain I3X05_15000 PF17157 Gammaproteobacterial periplasmic sensor domain I3X05_15005 PF00436 Single-strand binding protein family I3X05_15015 PF00196 Bacterial regulatory proteins, luxR family I3X05_15020 PF00483 Nucleotidyl transferase I3X05_15025 PF17760 UvrA interaction domain I3X05_15025 PF17755 UvrA DNA-binding domain I3X05_15025 PF00005 ABC transporter I3X05_15035 PF00266 Aminotransferase class-V I3X05_15040 PF00696 Amino acid kinase family I3X05_15040 PF01842 ACT domain I3X05_15045 PF02607 B12 binding domain I3X05_15045 PF02574 Homocysteine S-methyltransferase I3X05_15045 PF00809 Pterin binding enzyme I3X05_15045 PF02965 Vitamin B12 dependent methionine synthase, activation domain I3X05_15045 PF02310 B12 binding domain I3X05_15050 PF00999 Sodium/hydrogen exchanger family I3X05_15055 PF01553 Acyltransferase I3X05_15060 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) I3X05_15065 PF01722 BolA-like protein I3X05_15075 PF05494 MlaC protein I3X05_15080 PF02470 MlaD protein I3X05_15085 PF02405 Permease MlaE I3X05_15090 PF00005 ABC transporter I3X05_15095 PF01699 Sodium/calcium exchanger protein I3X05_15100 PF00571 CBS domain I3X05_15100 PF01380 SIS domain I3X05_15120 PF12399 Branched-chain amino acid ATP-binding cassette transporter I3X05_15120 PF00005 ABC transporter I3X05_15125 PF04552 Sigma-54, DNA binding domain I3X05_15125 PF04963 Sigma-54 factor, core binding domain I3X05_15125 PF00309 Sigma-54 factor, Activator interacting domain (AID) I3X05_15130 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein I3X05_15135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 I3X05_15140 PF03668 P-loop ATPase protein family I3X05_15145 PF00381 PTS HPr component phosphorylation site I3X05_15150 PF00571 CBS domain I3X05_15150 PF01769 Divalent cation transporter I3X05_15150 PF03448 MgtE intracellular N domain I3X05_15155 PF01523 Putative modulator of DNA gyrase I3X05_15160 PF04751 Protein of unknown function (DUF615) I3X05_15165 PF00005 ABC transporter I3X05_15170 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_15180 PF02441 Flavoprotein I3X05_15185 PF08245 Mur ligase middle domain I3X05_15185 PF02875 Mur ligase family, glutamate ligase domain I3X05_15185 PF01225 Mur ligase family, catalytic domain I3X05_15190 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain I3X05_15195 PF00719 Inorganic pyrophosphatase I3X05_15200 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like I3X05_15205 PF04357 TamB, inner membrane protein subunit of TAM complex I3X05_15210 PF01103 Surface antigen I3X05_15210 PF17243 POTRA domain TamA domain 1 I3X05_15210 PF07244 Surface antigen variable number repeat I3X05_15215 PF01625 Peptide methionine sulfoxide reductase I3X05_15225 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) I3X05_15240 PF00005 ABC transporter I3X05_15240 PF02687 FtsX-like permease family I3X05_15240 PF12704 MacB-like periplasmic core domain I3X05_15265 PF02080 TrkA-C domain I3X05_15265 PF03600 Citrate transporter I3X05_15270 PF00009 Elongation factor Tu GTP binding domain I3X05_15275 PF01507 Phosphoadenosine phosphosulfate reductase family I3X05_15280 PF10414 Sirohaem synthase dimerisation region I3X05_15280 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases I3X05_15280 PF14824 Sirohaem biosynthesis protein central I3X05_15285 PF00149 Calcineurin-like phosphoesterase I3X05_15285 PF02872 5'-nucleotidase, C-terminal domain I3X05_15295 PF13673 Acetyltransferase (GNAT) domain I3X05_15300 PF00892 EamA-like transporter family I3X05_15310 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase I3X05_15310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase I3X05_15315 PF01196 Ribosomal protein L17 I3X05_15320 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain I3X05_15320 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain I3X05_15320 PF01000 RNA polymerase Rpb3/RpoA insert domain I3X05_15325 PF01479 S4 domain I3X05_15325 PF00163 Ribosomal protein S4/S9 N-terminal domain I3X05_15330 PF00411 Ribosomal protein S11 I3X05_15335 PF00416 Ribosomal protein S13/S18 I3X05_15340 PF00444 Ribosomal protein L36 I3X05_15345 PF00344 SecY translocase I3X05_15350 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A I3X05_15355 PF00327 Ribosomal protein L30p/L7e I3X05_15360 PF00333 Ribosomal protein S5, N-terminal domain I3X05_15360 PF03719 Ribosomal protein S5, C-terminal domain I3X05_15365 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast I3X05_15370 PF00347 Ribosomal protein L6 I3X05_15375 PF00410 Ribosomal protein S8 I3X05_15380 PF00253 Ribosomal protein S14p/S29e I3X05_15385 PF00673 ribosomal L5P family C-terminus I3X05_15385 PF00281 Ribosomal protein L5 I3X05_15390 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 I3X05_15390 PF00467 KOW motif I3X05_15395 PF00238 Ribosomal protein L14p/L23e I3X05_15400 PF00366 Ribosomal protein S17 I3X05_15405 PF00831 Ribosomal L29 protein I3X05_15410 PF00252 Ribosomal protein L16p/L10e I3X05_15415 PF07650 KH domain I3X05_15415 PF00189 Ribosomal protein S3, C-terminal domain I3X05_15420 PF00237 Ribosomal protein L22p/L17e I3X05_15425 PF00203 Ribosomal protein S19 I3X05_15430 PF00181 Ribosomal Proteins L2, RNA binding domain I3X05_15430 PF03947 Ribosomal Proteins L2, C-terminal domain I3X05_15435 PF00276 Ribosomal protein L23 I3X05_15440 PF00573 Ribosomal protein L4/L1 family I3X05_15445 PF00297 Ribosomal protein L3 I3X05_15450 PF00338 Ribosomal protein S10p/S20e I3X05_15455 PF00210 Ferritin-like domain I3X05_15460 PF04324 BFD-like [2Fe-2S] binding domain I3X05_15465 PF03144 Elongation factor Tu domain 2 I3X05_15465 PF00009 Elongation factor Tu GTP binding domain I3X05_15465 PF03143 Elongation factor Tu C-terminal domain I3X05_15470 PF03764 Elongation factor G, domain IV I3X05_15470 PF00009 Elongation factor Tu GTP binding domain I3X05_15470 PF03144 Elongation factor Tu domain 2 I3X05_15470 PF00679 Elongation factor G C-terminus I3X05_15470 PF14492 Elongation Factor G, domain II I3X05_15475 PF00177 Ribosomal protein S7p/S5e I3X05_15480 PF00164 Ribosomal protein S12/S23 I3X05_15485 PF04077 DsrH like protein I3X05_15490 PF02635 DsrE/DsrF-like family I3X05_15495 PF02635 DsrE/DsrF-like family I3X05_15500 PF08348 YheO-like PAS domain I3X05_15500 PF13309 HTH domain I3X05_15505 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase I3X05_15505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase I3X05_15515 PF04102 SlyX I3X05_15520 PF01112 Asparaginase I3X05_15525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase I3X05_15535 PF02254 TrkA-N domain I3X05_15535 PF00999 Sodium/hydrogen exchanger family I3X05_15540 PF02525 Flavodoxin-like fold I3X05_15545 PF00005 ABC transporter I3X05_15545 PF12848 ABC transporter I3X05_15555 PF00561 alpha/beta hydrolase fold I3X05_15560 PF06794 Uncharacterised protein family (UPF0270) I3X05_15565 PF00485 Phosphoribulokinase / Uridine kinase family I3X05_15570 PF00027 Cyclic nucleotide-binding domain I3X05_15570 PF13545 Crp-like helix-turn-helix domain I3X05_15575 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) I3X05_15585 PF00171 Aldehyde dehydrogenase family I3X05_15590 PF04958 Arginine N-succinyltransferase beta subunit I3X05_15595 PF00202 Aminotransferase class-III I3X05_15600 PF00117 Glutamine amidotransferase class-I I3X05_15605 PF07992 Pyridine nucleotide-disulphide oxidoreductase I3X05_15610 PF04231 Endonuclease I I3X05_15630 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) I3X05_15635 PF00579 tRNA synthetases class I (W and Y) I3X05_15640 PF13419 Haloacid dehalogenase-like hydrolase I3X05_15645 PF08032 RNA 2'-O ribose methyltransferase substrate binding I3X05_15645 PF00588 SpoU rRNA Methylase family I3X05_15650 PF00773 RNB domain I3X05_15650 PF08206 Ribonuclease B OB domain I3X05_15650 PF08461 Ribonuclease R winged-helix domain I3X05_15650 PF17876 Cold shock domain I3X05_15650 PF00575 S1 RNA binding domain I3X05_15655 PF02082 Transcriptional regulator I3X05_15660 PF00175 Oxidoreductase NAD-binding domain I3X05_15660 PF00042 Globin I3X05_15660 PF00970 Oxidoreductase FAD-binding domain I3X05_15665 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) I3X05_15670 PF08238 Sel1 repeat I3X05_15675 PF00709 Adenylosuccinate synthetase I3X05_15680 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) I3X05_15685 PF01145 SPFH domain / Band 7 family I3X05_15690 PF12221 Bacterial membrane protein N terminal I3X05_15690 PF01145 SPFH domain / Band 7 family I3X05_15695 PF16360 GTP-binding GTPase Middle Region I3X05_15695 PF13167 GTP-binding GTPase N-terminal I3X05_15695 PF01926 50S ribosome-binding GTPase I3X05_15700 PF17209 Hfq protein I3X05_15710 PF01119 DNA mismatch repair protein, C-terminal domain I3X05_15710 PF08676 MutL C terminal dimerisation domain I3X05_15715 PF01520 N-acetylmuramoyl-L-alanine amidase I3X05_15720 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE I3X05_15725 PF08331 Domain of unknown function (DUF1730) I3X05_15775 PF00929 Exonuclease I3X05_15780 PF03193 RsgA GTPase I3X05_15785 PF02666 Phosphatidylserine decarboxylase I3X05_15790 PF00939 Sodium:sulfate symporter transmembrane region I3X05_15800 PF06415 BPG-independent PGAM N-terminus (iPGM_N) I3X05_15800 PF01676 Metalloenzyme superfamily I3X05_15805 PF00581 Rhodanese-like domain I3X05_15810 PF02556 Preprotein translocase subunit SecB I3X05_15815 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus I3X05_15815 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus I3X05_15820 PF06426 Serine acetyltransferase, N-terminal I3X05_15820 PF00132 Bacterial transferase hexapeptide (six repeats) I3X05_15825 PF01551 Peptidase family M23 I3X05_15835 PF08360 QacR-like protein, C-terminal region I3X05_15835 PF00440 Bacterial regulatory proteins, tetR family I3X05_15845 PF00152 tRNA synthetases class II (D, K and N) I3X05_15850 PF02910 Fumarate reductase flavoprotein C-term I3X05_15850 PF00890 FAD binding domain I3X05_15855 PF13085 2Fe-2S iron-sulfur cluster binding domain I3X05_15855 PF13183 4Fe-4S dicluster domain I3X05_15860 PF02300 Fumarate reductase subunit C I3X05_15865 PF02313 Fumarate reductase subunit D I3X05_15870 PF01132 Elongation factor P (EF-P) OB domain I3X05_15870 PF08207 Elongation factor P (EF-P) KOW-like domain I3X05_15870 PF09285 Elongation factor P, C-terminal I3X05_15875 PF04055 Radical SAM superfamily I3X05_15880 PF02308 MgtC family I3X05_15890 PF00118 TCP-1/cpn60 chaperonin family I3X05_15895 PF00166 Chaperonin 10 Kd subunit I3X05_15900 PF01554 MatE I3X05_15905 PF00365 Phosphofructokinase I3X05_15910 PF16916 Dimerisation domain of Zinc Transporter I3X05_15910 PF01545 Cation efflux family I3X05_15915 PF07813 LTXXQ motif family protein I3X05_15920 PF00072 Response regulator receiver domain I3X05_15920 PF00486 Transcriptional regulatory protein, C terminal I3X05_15925 PF00512 His Kinase A (phospho-acceptor) domain I3X05_15925 PF16527 Two-component sensor protein CpxA, periplasmic domain I3X05_15925 PF00672 HAMP domain I3X05_15925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_15930 PF00588 SpoU rRNA Methylase family I3X05_15935 PF04186 FxsA cytoplasmic membrane protein I3X05_15940 PF00206 Lyase I3X05_15940 PF10415 Fumarase C C-terminus I3X05_15945 PF03605 Anaerobic c4-dicarboxylate membrane transporter I3X05_15950 PF02683 Cytochrome C biogenesis protein transmembrane region I3X05_15950 PF11412 Disulphide bond corrector protein DsbC I3X05_15955 PF00196 Bacterial regulatory proteins, luxR family I3X05_15955 PF00072 Response regulator receiver domain I3X05_15960 PF00999 Sodium/hydrogen exchanger family I3X05_15960 PF03471 Transporter associated domain I3X05_15960 PF02080 TrkA-C domain I3X05_15970 PF00474 Sodium:solute symporter family I3X05_15975 PF00512 His Kinase A (phospho-acceptor) domain I3X05_15975 PF00672 HAMP domain I3X05_15975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_15975 PF01627 Hpt domain I3X05_15975 PF00072 Response regulator receiver domain I3X05_15980 PF12832 MFS_1 like family I3X05_15995 PF00501 AMP-binding enzyme I3X05_15995 PF16177 Acetyl-coenzyme A synthetase N-terminus I3X05_15995 PF13193 AMP-binding enzyme C-terminal domain I3X05_16000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family I3X05_16010 PF01220 Dehydroquinase class II I3X05_16015 PF00364 Biotin-requiring enzyme I3X05_16020 PF00289 Biotin carboxylase, N-terminal domain I3X05_16020 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain I3X05_16020 PF02785 Biotin carboxylase C-terminal domain I3X05_16030 PF01207 Dihydrouridine synthase (Dus) I3X05_16035 PF02954 Bacterial regulatory protein, Fis family I3X05_16065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_16065 PF17200 Single Cache domain 2 I3X05_16065 PF00672 HAMP domain I3X05_16070 PF13411 MerR HTH family regulatory protein I3X05_16080 PF01808 AICARFT/IMPCHase bienzyme I3X05_16080 PF02142 MGS-like domain I3X05_16085 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain I3X05_16085 PF02843 Phosphoribosylglycinamide synthetase, C domain I3X05_16085 PF02844 Phosphoribosylglycinamide synthetase, N domain I3X05_16095 PF00216 Bacterial DNA-binding protein I3X05_16100 PF00571 CBS domain I3X05_16100 PF01595 Cyclin M transmembrane N-terminal domain I3X05_16105 PF04222 Protein of unknown function (DUF416) I3X05_16110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain I3X05_16110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain I3X05_16115 PF03167 Uracil DNA glycosylase superfamily I3X05_16120 PF01208 Uroporphyrinogen decarboxylase (URO-D) I3X05_16125 PF09297 NADH pyrophosphatase zinc ribbon domain I3X05_16125 PF00293 NUDIX domain I3X05_16130 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ I3X05_16135 PF04997 RNA polymerase Rpb1, domain 1 I3X05_16135 PF04998 RNA polymerase Rpb1, domain 5 I3X05_16135 PF00623 RNA polymerase Rpb1, domain 2 I3X05_16135 PF05000 RNA polymerase Rpb1, domain 4 I3X05_16135 PF04983 RNA polymerase Rpb1, domain 3 I3X05_16140 PF04560 RNA polymerase Rpb2, domain 7 I3X05_16140 PF04561 RNA polymerase Rpb2, domain 2 I3X05_16140 PF04563 RNA polymerase beta subunit I3X05_16140 PF10385 RNA polymerase beta subunit external 1 domain I3X05_16140 PF04565 RNA polymerase Rpb2, domain 3 I3X05_16140 PF00562 RNA polymerase Rpb2, domain 6 I3X05_16145 PF16320 Ribosomal protein L7/L12 dimerisation domain I3X05_16145 PF00542 Ribosomal protein L7/L12 C-terminal domain I3X05_16150 PF00466 Ribosomal protein L10 I3X05_16155 PF00687 Ribosomal protein L1p/L10e family I3X05_16160 PF03946 Ribosomal protein L11, N-terminal domain I3X05_16160 PF00298 Ribosomal protein L11, RNA binding domain I3X05_16165 PF00467 KOW motif I3X05_16165 PF02357 Transcription termination factor nusG I3X05_16170 PF00584 SecE/Sec61-gamma subunits of protein translocation complex I3X05_16175 PF03143 Elongation factor Tu C-terminal domain I3X05_16175 PF00009 Elongation factor Tu GTP binding domain I3X05_16175 PF03144 Elongation factor Tu domain 2 I3X05_16200 PF00485 Phosphoribulokinase / Uridine kinase family I3X05_16205 PF02237 Biotin protein ligase C terminal domain I3X05_16205 PF08279 HTH domain I3X05_16205 PF03099 Biotin/lipoate A/B protein ligase family I3X05_16210 PF01565 FAD binding domain I3X05_16210 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain I3X05_16220 PF13091 PLD-like domain I3X05_16230 PF13358 DDE superfamily endonuclease I3X05_16245 PF13358 DDE superfamily endonuclease I3X05_16325 PF01177 Asp/Glu/Hydantoin racemase I3X05_16335 PF07715 TonB-dependent Receptor Plug Domain I3X05_16335 PF00593 TonB dependent receptor I3X05_16340 PF05958 tRNA (Uracil-5-)-methyltransferase I3X05_16350 PF09615 CRISPR-associated protein (Cas_Csy3) I3X05_16355 PF09614 CRISPR-associated protein (Cas_Csy2) I3X05_16360 PF09611 CRISPR-associated protein (Cas_Csy1) I3X05_16365 PF18019 HD domain I3X05_16370 PF01867 CRISPR associated protein Cas1 I3X05_16380 PF03180 NLPA lipoprotein I3X05_16390 PF00440 Bacterial regulatory proteins, tetR family I3X05_16395 PF07992 Pyridine nucleotide-disulphide oxidoreductase I3X05_16395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain I3X05_16405 PF00717 Peptidase S24-like I3X05_16405 PF01726 LexA DNA binding domain I3X05_16410 PF01553 Acyltransferase I3X05_16415 PF01040 UbiA prenyltransferase family I3X05_16420 PF04345 Chorismate lyase I3X05_16425 PF03748 Flagellar basal body-associated protein FliL I3X05_16430 PF01694 Rhomboid family I3X05_16430 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease I3X05_16435 PF00581 Rhodanese-like domain I3X05_16440 PF04545 Sigma-70, region 4 I3X05_16440 PF00140 Sigma-70 factor, region 1.2 I3X05_16440 PF04542 Sigma-70 region 2 I3X05_16445 PF18075 FtsX extracellular domain I3X05_16450 PF00005 ABC transporter I3X05_16455 PF00448 SRP54-type protein, GTPase domain I3X05_16455 PF02881 SRP54-type protein, helical bundle domain I3X05_16470 PF01914 MarC family integral membrane protein I3X05_16490 PF01757 Acyltransferase family I3X05_16495 PF00563 EAL domain I3X05_16495 PF08668 HDOD domain I3X05_16500 PF01810 LysE type translocator I3X05_16505 PF12146 Serine aminopeptidase, S33 I3X05_16525 PF03942 DTW domain I3X05_16530 PF10442 FIST C domain I3X05_16530 PF08495 FIST N domain I3X05_16530 PF00990 Diguanylate cyclase, GGDEF domain I3X05_16530 PF00563 EAL domain I3X05_16535 PF13419 Haloacid dehalogenase-like hydrolase I3X05_16540 PF00589 Phage integrase family I3X05_16540 PF02899 Phage integrase, N-terminal SAM-like domain I3X05_16550 PF01678 Diaminopimelate epimerase I3X05_16555 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain I3X05_16555 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain I3X05_16565 PF01491 Frataxin-like domain I3X05_16570 PF01295 Adenylate cyclase, class-I I3X05_16570 PF12633 Adenylate cyclase NT domain I3X05_16575 PF03900 Porphobilinogen deaminase, C-terminal domain I3X05_16575 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain I3X05_16580 PF02602 Uroporphyrinogen-III synthase HemD I3X05_16585 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase I3X05_16590 PF07219 HemY protein N-terminus I3X05_16620 PF00175 Oxidoreductase NAD-binding domain I3X05_16630 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase I3X05_16640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain I3X05_16640 PF07498 Rho termination factor, N-terminal domain I3X05_16640 PF07497 Rho termination factor, RNA-binding domain I3X05_16645 PF00085 Thioredoxin I3X05_16650 PF00271 Helicase conserved C-terminal domain I3X05_16650 PF00270 DEAD/DEAH box helicase I3X05_16655 PF02541 Ppx/GppA phosphatase family I3X05_16660 PF02592 Putative vitamin uptake transporter I3X05_16670 PF09382 RQC domain I3X05_16670 PF16124 RecQ zinc-binding I3X05_16670 PF00271 Helicase conserved C-terminal domain I3X05_16670 PF00570 HRDC domain I3X05_16670 PF00270 DEAD/DEAH box helicase I3X05_16675 PF00892 EamA-like transporter family I3X05_16685 PF01810 LysE type translocator I3X05_16690 PF13361 UvrD-like helicase C-terminal domain I3X05_16690 PF00580 UvrD/REP helicase N-terminal domain I3X05_16700 PF05114 Protein of unknown function (DUF692) I3X05_16720 PF07690 Major Facilitator Superfamily I3X05_16725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_16725 PF03466 LysR substrate binding domain I3X05_16730 PF00557 Metallopeptidase family M24 I3X05_16730 PF00557 Metallopeptidase family M24 I3X05_16730 PF01321 Creatinase/Prolidase N-terminal domain I3X05_16730 PF01321 Creatinase/Prolidase N-terminal domain I3X05_16735 PF04055 Radical SAM superfamily I3X05_16735 PF06968 Biotin and Thiamin Synthesis associated domain I3X05_16740 PF05690 Thiazole biosynthesis protein ThiG I3X05_16750 PF00899 ThiF family I3X05_16755 PF02581 Thiamine monophosphate synthase I3X05_16760 PF01964 Radical SAM ThiC family I3X05_16760 PF13667 ThiC-associated domain I3X05_16765 PF02537 CrcB-like protein, Camphor Resistance (CrcB) I3X05_16810 PF00132 Bacterial transferase hexapeptide (six repeats) I3X05_16815 PF07369 Protein of unknown function (DUF1488) I3X05_16820 PF18317 Shikimate 5'-dehydrogenase C-terminal domain I3X05_16820 PF01488 Shikimate / quinate 5-dehydrogenase I3X05_16820 PF08501 Shikimate dehydrogenase substrate binding domain I3X05_16825 PF01218 Coproporphyrinogen III oxidase I3X05_16830 PF01300 Telomere recombination I3X05_16835 PF00731 AIR carboxylase I3X05_16840 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain I3X05_16840 PF02222 ATP-grasp domain I3X05_16845 PF01396 Topoisomerase DNA binding C4 zinc finger I3X05_16850 PF04361 Protein of unknown function (DUF494) I3X05_16855 PF02481 DNA recombination-mediator protein A I3X05_16855 PF17782 DprA winged helix domain I3X05_16865 PF01327 Polypeptide deformylase I3X05_16870 PF00551 Formyl transferase I3X05_16870 PF02911 Formyl transferase, C-terminal domain I3X05_16875 PF01029 NusB family I3X05_16875 PF01189 16S rRNA methyltransferase RsmB/F I3X05_16880 PF02254 TrkA-N domain I3X05_16880 PF02080 TrkA-C domain I3X05_16885 PF02386 Cation transport protein I3X05_16895 PF03006 Haemolysin-III related I3X05_16900 PF07070 SpoOM protein I3X05_16905 PF06288 Protein of unknown function (DUF1040) I3X05_16910 PF13746 4Fe-4S dicluster domain I3X05_16910 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase I3X05_16910 PF12801 4Fe-4S binding domain I3X05_16915 PF01636 Phosphotransferase enzyme family I3X05_16920 PF01323 DSBA-like thioredoxin domain I3X05_16925 PF01553 Acyltransferase I3X05_16960 PF09561 HpaII restriction endonuclease I3X05_16965 PF00145 C-5 cytosine-specific DNA methylase I3X05_16975 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain I3X05_16975 PF00205 Thiamine pyrophosphate enzyme, central domain I3X05_16975 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain I3X05_16985 PF01063 Amino-transferase class IV I3X05_16990 PF00920 Dehydratase family I3X05_16995 PF00291 Pyridoxal-phosphate dependent enzyme I3X05_16995 PF00585 C-terminal regulatory domain of Threonine dehydratase I3X05_17000 PF03466 LysR substrate binding domain I3X05_17000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_17005 PF07690 Major Facilitator Superfamily I3X05_17010 PF00132 Bacterial transferase hexapeptide (six repeats) I3X05_17010 PF12804 MobA-like NTP transferase domain I3X05_17015 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain I3X05_17015 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain I3X05_17020 PF02874 ATP synthase alpha/beta family, beta-barrel domain I3X05_17020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain I3X05_17025 PF00231 ATP synthase I3X05_17030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain I3X05_17030 PF02874 ATP synthase alpha/beta family, beta-barrel domain I3X05_17030 PF00306 ATP synthase alpha/beta chain, C terminal domain I3X05_17035 PF00213 ATP synthase delta (OSCP) subunit I3X05_17040 PF00430 ATP synthase B/B' CF(0) I3X05_17045 PF00137 ATP synthase subunit C I3X05_17050 PF00119 ATP synthase A chain I3X05_17055 PF03899 ATP synthase I chain I3X05_17060 PF17762 HTH domain found in ParB protein I3X05_17060 PF02195 ParB-like nuclease domain I3X05_17065 PF13614 AAA domain I3X05_17070 PF02527 rRNA small subunit methyltransferase G I3X05_17075 PF13932 GidA associated domain I3X05_17075 PF01134 Glucose inhibited division protein A I3X05_17080 PF00258 Flavodoxin I3X05_17085 PF12631 MnmE helical domain I3X05_17085 PF01926 50S ribosome-binding GTPase I3X05_17085 PF10396 GTP-binding protein TrmE N-terminus I3X05_17090 PF02096 60Kd inner membrane protein I3X05_17090 PF14849 YidC periplasmic domain I3X05_17095 PF01809 Putative membrane protein insertion efficiency factor I3X05_17100 PF00825 Ribonuclease P I3X05_17105 PF00468 Ribosomal protein L34 I3X05_17110 PF00005 ABC transporter I3X05_17115 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_17120 PF00497 Bacterial extracellular solute-binding proteins, family 3 I3X05_17155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_17155 PF00672 HAMP domain I3X05_17155 PF12729 Four helix bundle sensory module for signal transduction I3X05_17170 PF01618 MotA/TolQ/ExbB proton channel family I3X05_17175 PF01618 MotA/TolQ/ExbB proton channel family I3X05_17180 PF02472 Biopolymer transport protein ExbD/TolR I3X05_17195 PF03605 Anaerobic c4-dicarboxylate membrane transporter I3X05_17200 PF17200 Single Cache domain 2 I3X05_17200 PF00672 HAMP domain I3X05_17200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_17210 PF11756 Nitrous oxide-stimulated promoter I3X05_17215 PF01554 MatE I3X05_17220 PF12833 Helix-turn-helix domain I3X05_17225 PF07690 Major Facilitator Superfamily I3X05_17230 PF00085 Thioredoxin I3X05_17235 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal I3X05_17235 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III I3X05_17240 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain I3X05_17240 PF07992 Pyridine nucleotide-disulphide oxidoreductase I3X05_17255 PF04143 Sulphur transport I3X05_17270 PF00873 AcrB/AcrD/AcrF family I3X05_17280 PF13808 DDE_Tnp_1-associated I3X05_17280 PF01609 Transposase DDE domain I3X05_17290 PF03477 ATP cone domain I3X05_17290 PF13597 Anaerobic ribonucleoside-triphosphate reductase I3X05_17300 PF00155 Aminotransferase class I and II I3X05_17305 PF08443 RimK-like ATP-grasp domain I3X05_17305 PF18030 RimK PreATP-grasp domain I3X05_17320 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain I3X05_17320 PF07685 CobB/CobQ-like glutamine amidotransferase domain I3X05_17330 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_17335 PF03459 TOBE domain I3X05_17335 PF00005 ABC transporter I3X05_17345 PF00990 Diguanylate cyclase, GGDEF domain I3X05_17350 PF00990 Diguanylate cyclase, GGDEF domain I3X05_17365 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch I3X05_17365 PF01262 Alanine dehydrogenase/PNT, C-terminal domain I3X05_17365 PF05222 Alanine dehydrogenase/PNT, N-terminal domain I3X05_17370 PF02233 NAD(P) transhydrogenase beta subunit I3X05_17380 PF00072 Response regulator receiver domain I3X05_17380 PF00486 Transcriptional regulatory protein, C terminal I3X05_17395 PF03701 Uncharacterised protein family (UPF0181) I3X05_17420 PF01609 Transposase DDE domain I3X05_17420 PF13808 DDE_Tnp_1-associated I3X05_17515 PF01253 Translation initiation factor SUI1 I3X05_17530 PF01820 D-ala D-ala ligase N-terminus I3X05_17530 PF07478 D-ala D-ala ligase C-terminus I3X05_17540 PF13607 Succinyl-CoA ligase like flavodoxin domain I3X05_17540 PF13380 CoA binding domain I3X05_17540 PF00583 Acetyltransferase (GNAT) family I3X05_17545 PF03466 LysR substrate binding domain I3X05_17545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_17550 PF00593 TonB dependent receptor I3X05_17550 PF07715 TonB-dependent Receptor Plug Domain I3X05_17550 PF04886 PT repeat I3X05_17555 PF03707 Bacterial signalling protein N terminal repeat I3X05_17555 PF00563 EAL domain I3X05_17555 PF00990 Diguanylate cyclase, GGDEF domain I3X05_17565 PF03746 LamB/YcsF family I3X05_17575 PF02626 Carboxyltransferase domain, subdomain A and B I3X05_17590 PF00005 ABC transporter I3X05_17595 PF13472 GDSL-like Lipase/Acylhydrolase family I3X05_17600 PF12241 Trans-2-enoyl-CoA reductase catalytic region I3X05_17600 PF07055 Enoyl reductase FAD binding domain I3X05_17600 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase I3X05_17605 PF00563 EAL domain I3X05_17605 PF00498 FHA domain I3X05_17605 PF00990 Diguanylate cyclase, GGDEF domain I3X05_17615 PF01556 DnaJ C terminal domain I3X05_17615 PF00684 DnaJ central domain I3X05_17615 PF00226 DnaJ domain I3X05_17630 PF03091 CutA1 divalent ion tolerance protein I3X05_17635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_17635 PF03466 LysR substrate binding domain I3X05_17640 PF00128 Alpha amylase, catalytic domain I3X05_17640 PF16657 Maltogenic Amylase, C-terminal domain I3X05_17645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle I3X05_17645 PF12793 Sugar transport-related sRNA regulator N-term I3X05_17655 PF03061 Thioesterase superfamily I3X05_17665 PF17820 PDZ domain I3X05_17665 PF02163 Peptidase family M50 I3X05_17670 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) I3X05_17675 PF12262 Bacterial virulence factor lipase N-terminal I3X05_17685 PF00892 EamA-like transporter family I3X05_17695 PF03741 Integral membrane protein TerC family I3X05_17700 PF00149 Calcineurin-like phosphoesterase I3X05_17700 PF02872 5'-nucleotidase, C-terminal domain I3X05_17705 PF11398 Protein of unknown function (DUF2813) I3X05_17710 PF06496 Protein of unknown function (DUF1097) I3X05_17715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_17715 PF03466 LysR substrate binding domain I3X05_17720 PF01226 Formate/nitrite transporter I3X05_17725 PF04264 YceI-like domain I3X05_17730 PF01292 Prokaryotic cytochrome b561 I3X05_17745 PF00270 DEAD/DEAH box helicase I3X05_17745 PF00271 Helicase conserved C-terminal domain I3X05_17750 PF04336 Acyl carrier protein phosphodiesterase I3X05_17755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_17755 PF00672 HAMP domain I3X05_17755 PF12729 Four helix bundle sensory module for signal transduction I3X05_17760 PF13419 Haloacid dehalogenase-like hydrolase I3X05_17775 PF00294 pfkB family carbohydrate kinase I3X05_17780 PF01268 Formate--tetrahydrofolate ligase I3X05_17785 PF00005 ABC transporter I3X05_17785 PF12848 ABC transporter I3X05_17790 PF00483 Nucleotidyl transferase I3X05_17795 PF00704 Glycosyl hydrolases family 18 I3X05_17795 PF06483 Chitinase C I3X05_17800 PF06719 AraC-type transcriptional regulator N-terminus I3X05_17800 PF12833 Helix-turn-helix domain I3X05_17805 PF00465 Iron-containing alcohol dehydrogenase I3X05_17810 PF02954 Bacterial regulatory protein, Fis family I3X05_17810 PF00072 Response regulator receiver domain I3X05_17810 PF14532 Sigma-54 interaction domain I3X05_17815 PF00512 His Kinase A (phospho-acceptor) domain I3X05_17815 PF02743 Cache domain I3X05_17815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_17825 PF07690 Major Facilitator Superfamily I3X05_17830 PF00224 Pyruvate kinase, barrel domain I3X05_17830 PF02887 Pyruvate kinase, alpha/beta domain I3X05_17835 PF00583 Acetyltransferase (GNAT) family I3X05_17840 PF00873 AcrB/AcrD/AcrF family I3X05_17845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion I3X05_17845 PF00529 HlyD membrane-fusion protein of T1SS I3X05_17850 PF00072 Response regulator receiver domain I3X05_17850 PF00486 Transcriptional regulatory protein, C terminal I3X05_17855 PF00989 PAS fold I3X05_17855 PF00512 His Kinase A (phospho-acceptor) domain I3X05_17855 PF16736 Single Cache-like I3X05_17855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_17865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_17865 PF03466 LysR substrate binding domain I3X05_17900 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family I3X05_17900 PF00356 Bacterial regulatory proteins, lacI family I3X05_17905 PF00381 PTS HPr component phosphorylation site I3X05_17905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 I3X05_17910 PF00294 pfkB family carbohydrate kinase I3X05_17915 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit I3X05_17915 PF02378 Phosphotransferase system, EIIC I3X05_17930 PF07690 Major Facilitator Superfamily I3X05_17945 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 I3X05_17945 PF00535 Glycosyl transferase family 2 I3X05_17955 PF00873 AcrB/AcrD/AcrF family I3X05_17960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion I3X05_17960 PF00529 HlyD membrane-fusion protein of T1SS I3X05_17980 PF01571 Aminomethyltransferase folate-binding domain I3X05_17980 PF08669 Glycine cleavage T-protein C-terminal barrel domain I3X05_17990 PF00464 Serine hydroxymethyltransferase I3X05_17995 PF01597 Glycine cleavage H-protein I3X05_18000 PF02347 Glycine cleavage system P-protein I3X05_18015 PF08447 PAS fold I3X05_18015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_18020 PF00356 Bacterial regulatory proteins, lacI family I3X05_18025 PF01263 Aldose 1-epimerase I3X05_18030 PF00288 GHMP kinases N terminal domain I3X05_18030 PF08544 GHMP kinases C terminal I3X05_18030 PF10509 Galactokinase galactose-binding signature I3X05_18035 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain I3X05_18035 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain I3X05_18040 PF16363 GDP-mannose 4,6 dehydratase I3X05_18050 PF16874 Glycosyl hydrolase family 36 C-terminal domain I3X05_18050 PF16875 Glycosyl hydrolase family 36 N-terminal domain I3X05_18055 PF02836 Glycosyl hydrolases family 2, TIM barrel domain I3X05_18055 PF02837 Glycosyl hydrolases family 2, sugar binding domain I3X05_18055 PF02929 Beta galactosidase small chain I3X05_18055 PF00703 Glycosyl hydrolases family 2 I3X05_18055 PF16353 Domain of unknown function(DUF4981) I3X05_18060 PF13407 Periplasmic binding protein domain I3X05_18065 PF00005 ABC transporter I3X05_18070 PF02653 Branched-chain amino acid transport system / permease component I3X05_18075 PF13476 AAA domain I3X05_18080 PF12320 Type 5 capsule protein repressor C-terminal domain I3X05_18080 PF00149 Calcineurin-like phosphoesterase I3X05_18085 PF00990 Diguanylate cyclase, GGDEF domain I3X05_18095 PF01926 50S ribosome-binding GTPase I3X05_18100 PF00155 Aminotransferase class I and II I3X05_18105 PF00072 Response regulator receiver domain I3X05_18105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_18110 PF00583 Acetyltransferase (GNAT) family I3X05_18120 PF01584 CheW-like domain I3X05_18120 PF00072 Response regulator receiver domain I3X05_18125 PF00356 Bacterial regulatory proteins, lacI family I3X05_18130 PF00294 pfkB family carbohydrate kinase I3X05_18135 PF13407 Periplasmic binding protein domain I3X05_18140 PF02653 Branched-chain amino acid transport system / permease component I3X05_18145 PF00005 ABC transporter I3X05_18150 PF05025 RbsD / FucU transport protein family I3X05_18165 PF04237 YjbR I3X05_18170 PF05762 VWA domain containing CoxE-like protein I3X05_18175 PF17868 AAA lid domain I3X05_18175 PF07728 AAA domain (dynein-related subfamily) I3X05_18175 PF12592 Protein of unknown function (DUF3763) I3X05_18185 PF01212 Beta-eliminating lyase I3X05_18195 PF00005 ABC transporter I3X05_18200 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_18205 PF00497 Bacterial extracellular solute-binding proteins, family 3 I3X05_18210 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_18220 PF12804 MobA-like NTP transferase domain I3X05_18220 PF00132 Bacterial transferase hexapeptide (six repeats) I3X05_18220 PF03479 Plants and Prokaryotes Conserved (PCC) domain I3X05_18225 PF01738 Dienelactone hydrolase family I3X05_18230 PF00814 Glycoprotease family I3X05_18230 PF00583 Acetyltransferase (GNAT) family I3X05_18235 PF00672 HAMP domain I3X05_18235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_18250 PF07968 Leukocidin/Hemolysin toxin family I3X05_18250 PF00652 Ricin-type beta-trefoil lectin domain I3X05_18255 PF07690 Major Facilitator Superfamily I3X05_18260 PF03009 Glycerophosphoryl diester phosphodiesterase family I3X05_18265 PF01523 Putative modulator of DNA gyrase I3X05_18270 PF01523 Putative modulator of DNA gyrase I3X05_18275 PF00563 EAL domain I3X05_18275 PF00990 Diguanylate cyclase, GGDEF domain I3X05_18275 PF08448 PAS fold I3X05_18280 PF03222 Tryptophan/tyrosine permease family I3X05_18325 PF00004 ATPase family associated with various cellular activities (AAA) I3X05_18325 PF06480 FtsH Extracellular I3X05_18325 PF17862 AAA+ lid domain I3X05_18325 PF01434 Peptidase family M41 I3X05_18410 PF01329 Pterin 4 alpha carbinolamine dehydratase I3X05_18415 PF00351 Biopterin-dependent aromatic amino acid hydroxylase I3X05_18420 PF13193 AMP-binding enzyme C-terminal domain I3X05_18420 PF00501 AMP-binding enzyme I3X05_18440 PF00892 EamA-like transporter family I3X05_18455 PF00465 Iron-containing alcohol dehydrogenase I3X05_18460 PF07995 Glucose / Sorbosone dehydrogenase I3X05_18475 PF13419 Haloacid dehalogenase-like hydrolase I3X05_18480 PF02754 Cysteine-rich domain I3X05_18480 PF13183 4Fe-4S dicluster domain I3X05_18485 PF00890 FAD binding domain I3X05_18490 PF01266 FAD dependent oxidoreductase I3X05_18490 PF04324 BFD-like [2Fe-2S] binding domain I3X05_18495 PF04116 Fatty acid hydroxylase superfamily I3X05_18505 PF12833 Helix-turn-helix domain I3X05_18505 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term I3X05_18510 PF00563 EAL domain I3X05_18510 PF00990 Diguanylate cyclase, GGDEF domain I3X05_18510 PF00498 FHA domain I3X05_18515 PF03618 Kinase/pyrophosphorylase I3X05_18520 PF00391 PEP-utilising enzyme, mobile domain I3X05_18520 PF02896 PEP-utilising enzyme, TIM barrel domain I3X05_18520 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain I3X05_18525 PF00005 ABC transporter I3X05_18525 PF00571 CBS domain I3X05_18530 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_18535 PF04069 Substrate binding domain of ABC-type glycine betaine transport system I3X05_18540 PF05199 GMC oxidoreductase I3X05_18540 PF00732 GMC oxidoreductase I3X05_18545 PF00171 Aldehyde dehydrogenase family I3X05_18550 PF13977 BetI-type transcriptional repressor, C-terminal I3X05_18550 PF00440 Bacterial regulatory proteins, tetR family I3X05_18555 PF00571 CBS domain I3X05_18555 PF00005 ABC transporter I3X05_18560 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_18565 PF04069 Substrate binding domain of ABC-type glycine betaine transport system I3X05_18570 PF13808 DDE_Tnp_1-associated I3X05_18570 PF01609 Transposase DDE domain I3X05_18585 PF00313 'Cold-shock' DNA-binding domain I3X05_18590 PF17876 Cold shock domain I3X05_18590 PF08206 Ribonuclease B OB domain I3X05_18590 PF00575 S1 RNA binding domain I3X05_18590 PF08461 Ribonuclease R winged-helix domain I3X05_18590 PF00773 RNB domain I3X05_18600 PF06965 Na+/H+ antiporter 1 I3X05_18635 PF00231 ATP synthase I3X05_18640 PF02874 ATP synthase alpha/beta family, beta-barrel domain I3X05_18640 PF00306 ATP synthase alpha/beta chain, C terminal domain I3X05_18640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain I3X05_18645 PF00430 ATP synthase B/B' CF(0) I3X05_18645 PF11154 Protein of unknown function (DUF2934) I3X05_18650 PF00137 ATP synthase subunit C I3X05_18655 PF00119 ATP synthase A chain I3X05_18675 PF02874 ATP synthase alpha/beta family, beta-barrel domain I3X05_18675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain I3X05_18680 PF03594 Benzoate membrane transport protein I3X05_18685 PF01381 Helix-turn-helix I3X05_18685 PF07883 Cupin domain I3X05_18700 PF01609 Transposase DDE domain I3X05_18700 PF13808 DDE_Tnp_1-associated I3X05_18705 PF13808 DDE_Tnp_1-associated I3X05_18705 PF01609 Transposase DDE domain I3X05_18750 PF00486 Transcriptional regulatory protein, C terminal I3X05_18750 PF00072 Response regulator receiver domain I3X05_18755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_18755 PF00512 His Kinase A (phospho-acceptor) domain I3X05_18755 PF00672 HAMP domain I3X05_18760 PF02687 FtsX-like permease family I3X05_18760 PF00005 ABC transporter I3X05_18760 PF12704 MacB-like periplasmic core domain I3X05_18765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion I3X05_18780 PF00872 Transposase, Mutator family I3X05_18840 PF00270 DEAD/DEAH box helicase I3X05_18840 PF13749 Putative ATP-dependent DNA helicase recG C-terminal I3X05_18840 PF17191 RecG wedge domain I3X05_18875 PF00392 Bacterial regulatory proteins, gntR family I3X05_18875 PF07702 UTRA domain I3X05_18880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 I3X05_18880 PF02378 Phosphotransferase system, EIIC I3X05_18880 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit I3X05_18885 PF01074 Glycosyl hydrolases family 38 N-terminal domain I3X05_18885 PF07748 Glycosyl hydrolases family 38 C-terminal domain I3X05_18885 PF09261 Alpha mannosidase middle domain I3X05_18890 PF02595 Glycerate kinase family I3X05_18895 PF01238 Phosphomannose isomerase type I I3X05_18930 PF00871 Acetokinase family I3X05_18935 PF03880 DbpA RNA binding domain I3X05_18935 PF12343 Cold shock protein DEAD box A I3X05_18935 PF00271 Helicase conserved C-terminal domain I3X05_18935 PF00270 DEAD/DEAH box helicase I3X05_18940 PF08206 Ribonuclease B OB domain I3X05_18940 PF00575 S1 RNA binding domain I3X05_18940 PF00773 RNB domain I3X05_18945 PF12833 Helix-turn-helix domain I3X05_18955 PF12849 PBP superfamily domain I3X05_18960 PF00793 DAHP synthetase I family I3X05_18965 PF01389 OmpA-like transmembrane domain I3X05_18965 PF00691 OmpA family I3X05_18970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III I3X05_18970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain I3X05_18970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I I3X05_18970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II I3X05_18975 PF00583 Acetyltransferase (GNAT) family I3X05_18980 PF01810 LysE type translocator I3X05_19000 PF01557 Fumarylacetoacetate (FAA) hydrolase family I3X05_19005 PF01047 MarR family I3X05_19010 PF02566 OsmC-like protein I3X05_19020 PF00892 EamA-like transporter family I3X05_19025 PF00462 Glutaredoxin I3X05_19035 PF07690 Major Facilitator Superfamily I3X05_19040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_19040 PF03466 LysR substrate binding domain I3X05_19045 PF08448 PAS fold I3X05_19045 PF08447 PAS fold I3X05_19045 PF00990 Diguanylate cyclase, GGDEF domain I3X05_19045 PF00563 EAL domain I3X05_19050 PF01551 Peptidase family M23 I3X05_19050 PF08525 Opacity-associated protein A N-terminal motif I3X05_19050 PF01476 LysM domain I3X05_19065 PF07670 Nucleoside recognition I3X05_19070 PF02743 Cache domain I3X05_19070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_19070 PF00672 HAMP domain I3X05_19075 PF02743 Cache domain I3X05_19075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_19075 PF00672 HAMP domain I3X05_19080 PF00128 Alpha amylase, catalytic domain I3X05_19085 PF02798 Glutathione S-transferase, N-terminal domain I3X05_19085 PF14497 Glutathione S-transferase, C-terminal domain I3X05_19095 PF00072 Response regulator receiver domain I3X05_19095 PF01584 CheW-like domain I3X05_19105 PF01243 Pyridoxamine 5'-phosphate oxidase I3X05_19110 PF06228 Haem utilisation ChuX/HutX I3X05_19115 PF04055 Radical SAM superfamily I3X05_19120 PF03544 Gram-negative bacterial TonB protein C-terminal I3X05_19125 PF01618 MotA/TolQ/ExbB proton channel family I3X05_19130 PF02472 Biopolymer transport protein ExbD/TolR I3X05_19135 PF01497 Periplasmic binding protein I3X05_19140 PF01032 FecCD transport family I3X05_19145 PF00005 ABC transporter I3X05_19180 PF01467 Cytidylyltransferase-like I3X05_19185 PF02540 NAD synthase I3X05_19190 PF03473 MOSC domain I3X05_19190 PF03473 MOSC domain I3X05_19190 PF00111 2Fe-2S iron-sulfur cluster binding domain I3X05_19190 PF03476 MOSC N-terminal beta barrel domain I3X05_19190 PF03476 MOSC N-terminal beta barrel domain I3X05_19190 PF00111 2Fe-2S iron-sulfur cluster binding domain I3X05_19195 PF01979 Amidohydrolase family I3X05_19200 PF00990 Diguanylate cyclase, GGDEF domain I3X05_19205 PF05661 Protein of unknown function (DUF808) I3X05_19235 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_19240 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_19240 PF14785 Maltose transport system permease protein MalF P2 domain I3X05_19245 PF01547 Bacterial extracellular solute-binding protein I3X05_19250 PF08402 TOBE domain I3X05_19250 PF00005 ABC transporter I3X05_19260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_19260 PF02743 Cache domain I3X05_19260 PF00672 HAMP domain I3X05_19265 PF07726 ATPase family associated with various cellular activities (AAA) I3X05_19265 PF17863 AAA lid domain I3X05_19270 PF01882 Protein of unknown function DUF58 I3X05_19285 PF00092 von Willebrand factor type A domain I3X05_19285 PF07584 Aerotolerance regulator N-terminal I3X05_19295 PF00990 Diguanylate cyclase, GGDEF domain I3X05_19295 PF08448 PAS fold I3X05_19300 PF00005 ABC transporter I3X05_19305 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_19310 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_19315 PF12849 PBP superfamily domain I3X05_19320 PF00672 HAMP domain I3X05_19320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_19340 PF07715 TonB-dependent Receptor Plug Domain I3X05_19340 PF00593 TonB dependent receptor I3X05_19345 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain I3X05_19345 PF00326 Prolyl oligopeptidase family I3X05_19350 PF00271 Helicase conserved C-terminal domain I3X05_19350 PF00270 DEAD/DEAH box helicase I3X05_19360 PF17969 L,D-transpeptidase C-terminal domain I3X05_19360 PF03734 L,D-transpeptidase catalytic domain I3X05_19360 PF01476 LysM domain I3X05_19365 PF03441 FAD binding domain of DNA photolyase I3X05_19365 PF00875 DNA photolyase I3X05_19370 PF13411 MerR HTH family regulatory protein I3X05_19375 PF08349 Protein of unknown function (DUF1722) I3X05_19380 PF01048 Phosphorylase superfamily I3X05_19395 PF00990 Diguanylate cyclase, GGDEF domain I3X05_19400 PF07155 ECF-type riboflavin transporter, S component I3X05_19405 PF00005 ABC transporter I3X05_19405 PF12558 ATP-binding cassette cobalt transporter I3X05_19415 PF00384 Molybdopterin oxidoreductase I3X05_19420 PF03466 LysR substrate binding domain I3X05_19420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_19425 PF02634 FdhD/NarQ family I3X05_19440 PF13302 Acetyltransferase (GNAT) domain I3X05_19450 PF12945 Flagellar protein YcgR I3X05_19450 PF07238 PilZ domain I3X05_19455 PF12729 Four helix bundle sensory module for signal transduction I3X05_19455 PF00672 HAMP domain I3X05_19455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_19460 PF13654 AAA domain I3X05_19460 PF05362 Lon protease (S16) C-terminal proteolytic domain I3X05_19470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_19470 PF00005 ABC transporter I3X05_19475 PF00326 Prolyl oligopeptidase family I3X05_19475 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain I3X05_19480 PF03466 LysR substrate binding domain I3X05_19480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_19485 PF02652 L-lactate permease I3X05_19490 PF01070 FMN-dependent dehydrogenase I3X05_19505 PF07690 Major Facilitator Superfamily I3X05_19540 PF04170 NlpE N-terminal domain I3X05_19545 PF00005 ABC transporter I3X05_19550 PF00497 Bacterial extracellular solute-binding proteins, family 3 I3X05_19555 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_19560 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_19580 PF00672 HAMP domain I3X05_19580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_19580 PF12729 Four helix bundle sensory module for signal transduction I3X05_19585 PF00497 Bacterial extracellular solute-binding proteins, family 3 I3X05_19605 PF08443 RimK-like ATP-grasp domain I3X05_19605 PF18030 RimK PreATP-grasp domain I3X05_19610 PF18030 RimK PreATP-grasp domain I3X05_19610 PF08443 RimK-like ATP-grasp domain I3X05_19615 PF00753 Metallo-beta-lactamase superfamily I3X05_19635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion I3X05_19640 PF00873 AcrB/AcrD/AcrF family I3X05_19650 PF14827 Double sensory domain of two-component sensor kinase I3X05_19650 PF00512 His Kinase A (phospho-acceptor) domain I3X05_19650 PF13426 PAS domain I3X05_19650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_19650 PF00672 HAMP domain I3X05_19655 PF00072 Response regulator receiver domain I3X05_19655 PF00486 Transcriptional regulatory protein, C terminal I3X05_19670 PF00672 HAMP domain I3X05_19670 PF02743 Cache domain I3X05_19670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_19680 PF00005 ABC transporter I3X05_19680 PF12848 ABC transporter I3X05_19695 PF00042 Globin I3X05_19695 PF00175 Oxidoreductase NAD-binding domain I3X05_19695 PF00970 Oxidoreductase FAD-binding domain I3X05_19700 PF01327 Polypeptide deformylase I3X05_19705 PF01595 Cyclin M transmembrane N-terminal domain I3X05_19705 PF00571 CBS domain I3X05_19705 PF03471 Transporter associated domain I3X05_19710 PF07943 Penicillin-binding protein 5, C-terminal domain I3X05_19710 PF00768 D-alanyl-D-alanine carboxypeptidase I3X05_19720 PF00593 TonB dependent receptor I3X05_19720 PF07715 TonB-dependent Receptor Plug Domain I3X05_19735 PF03315 Serine dehydratase beta chain I3X05_19735 PF03313 Serine dehydratase alpha chain I3X05_19740 PF00854 POT family I3X05_19750 PF00392 Bacterial regulatory proteins, gntR family I3X05_19750 PF07702 UTRA domain I3X05_19755 PF01497 Periplasmic binding protein I3X05_19755 PF12833 Helix-turn-helix domain I3X05_19760 PF00155 Aminotransferase class I and II I3X05_19770 PF13419 Haloacid dehalogenase-like hydrolase I3X05_19775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_19775 PF03466 LysR substrate binding domain I3X05_19790 PF14602 Hexapeptide repeat of succinyl-transferase I3X05_19790 PF12464 Maltose acetyltransferase I3X05_19795 PF02566 OsmC-like protein I3X05_19800 PF01641 SelR domain I3X05_19800 PF01625 Peptide methionine sulfoxide reductase I3X05_19805 PF00990 Diguanylate cyclase, GGDEF domain I3X05_19820 PF00563 EAL domain I3X05_19820 PF03707 Bacterial signalling protein N terminal repeat I3X05_19820 PF00990 Diguanylate cyclase, GGDEF domain I3X05_19835 PF00990 Diguanylate cyclase, GGDEF domain I3X05_19835 PF03707 Bacterial signalling protein N terminal repeat I3X05_19835 PF00563 EAL domain I3X05_19840 PF00392 Bacterial regulatory proteins, gntR family I3X05_19840 PF07702 UTRA domain I3X05_19845 PF02954 Bacterial regulatory protein, Fis family I3X05_19845 PF00158 Sigma-54 interaction domain I3X05_19845 PF00072 Response regulator receiver domain I3X05_19850 PF00072 Response regulator receiver domain I3X05_19860 PF00989 PAS fold I3X05_19860 PF00512 His Kinase A (phospho-acceptor) domain I3X05_19860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_19865 PF13426 PAS domain I3X05_19865 PF00563 EAL domain I3X05_19865 PF00990 Diguanylate cyclase, GGDEF domain I3X05_19870 PF00072 Response regulator receiver domain I3X05_19870 PF02954 Bacterial regulatory protein, Fis family I3X05_19870 PF00158 Sigma-54 interaction domain I3X05_19875 PF02743 Cache domain I3X05_19875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_19875 PF00512 His Kinase A (phospho-acceptor) domain I3X05_19885 PF03707 Bacterial signalling protein N terminal repeat I3X05_19885 PF00990 Diguanylate cyclase, GGDEF domain I3X05_19885 PF00563 EAL domain I3X05_19915 PF08402 TOBE domain I3X05_19915 PF00005 ABC transporter I3X05_19930 PF11953 Domain of unknown function (DUF3470) I3X05_19930 PF00037 4Fe-4S binding domain I3X05_19935 PF08032 RNA 2'-O ribose methyltransferase substrate binding I3X05_19935 PF00588 SpoU rRNA Methylase family I3X05_19940 PF08021 Siderophore-interacting FAD-binding domain I3X05_19940 PF04954 Siderophore-interacting protein I3X05_19950 PF00924 Mechanosensitive ion channel I3X05_19960 PF00873 AcrB/AcrD/AcrF family I3X05_19965 PF13533 Biotin-lipoyl like I3X05_19975 PF01161 Phosphatidylethanolamine-binding protein I3X05_19990 PF04244 Deoxyribodipyrimidine photo-lyase-related protein I3X05_19995 PF09278 MerR, DNA binding I3X05_19995 PF00376 MerR family regulatory protein I3X05_20005 PF00679 Elongation factor G C-terminus I3X05_20005 PF03144 Elongation factor Tu domain 2 I3X05_20005 PF14492 Elongation Factor G, domain II I3X05_20005 PF03764 Elongation factor G, domain IV I3X05_20005 PF00009 Elongation factor Tu GTP binding domain I3X05_20020 PF02001 Protein of unknown function DUF134 I3X05_20030 PF06942 GlpM protein I3X05_20045 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) I3X05_20050 PF00970 Oxidoreductase FAD-binding domain I3X05_20050 PF00175 Oxidoreductase NAD-binding domain I3X05_20060 PF03466 LysR substrate binding domain I3X05_20060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_20070 PF00881 Nitroreductase family I3X05_20075 PF00561 alpha/beta hydrolase fold I3X05_20080 PF01212 Beta-eliminating lyase I3X05_20090 PF00672 HAMP domain I3X05_20090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_20090 PF02743 Cache domain I3X05_20100 PF02690 Na+/Pi-cotransporter I3X05_20105 PF02798 Glutathione S-transferase, N-terminal domain I3X05_20110 PF07504 Fungalysin/Thermolysin Propeptide Motif I3X05_20110 PF04151 Bacterial pre-peptidase C-terminal domain I3X05_20110 PF03413 Peptidase propeptide and YPEB domain I3X05_20110 PF02868 Thermolysin metallopeptidase, alpha-helical domain I3X05_20110 PF01447 Thermolysin metallopeptidase, catalytic domain I3X05_20115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain I3X05_20115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain I3X05_20125 PF03922 OmpW family I3X05_20130 PF01266 FAD dependent oxidoreductase I3X05_20145 PF00158 Sigma-54 interaction domain I3X05_20145 PF00072 Response regulator receiver domain I3X05_20145 PF02954 Bacterial regulatory protein, Fis family I3X05_20150 PF02743 Cache domain I3X05_20150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_20150 PF00512 His Kinase A (phospho-acceptor) domain I3X05_20155 PF03466 LysR substrate binding domain I3X05_20155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_20160 PF01039 Carboxyl transferase domain I3X05_20160 PF17848 Acetyl-coA carboxylase zinc finger domain I3X05_20165 PF01654 Cytochrome bd terminal oxidase subunit I I3X05_20170 PF02322 Cytochrome bd terminal oxidase subunit II I3X05_20175 PF02798 Glutathione S-transferase, N-terminal domain I3X05_20180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_20180 PF03466 LysR substrate binding domain I3X05_20200 PF00367 phosphotransferase system, EIIB I3X05_20200 PF02378 Phosphotransferase system, EIIC I3X05_20205 PF00356 Bacterial regulatory proteins, lacI family I3X05_20210 PF08244 Glycosyl hydrolases family 32 C terminal I3X05_20210 PF00251 Glycosyl hydrolases family 32 N-terminal domain I3X05_20215 PF01590 GAF domain I3X05_20215 PF00990 Diguanylate cyclase, GGDEF domain I3X05_20215 PF00563 EAL domain I3X05_20215 PF00360 Phytochrome region I3X05_20220 PF00294 pfkB family carbohydrate kinase I3X05_20230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_20230 PF13426 PAS domain I3X05_20230 PF08447 PAS fold I3X05_20235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain I3X05_20235 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain I3X05_20250 PF01037 Lrp/AsnC ligand binding domain I3X05_20255 PF01810 LysE type translocator I3X05_20260 PF18693 TRAM domain I3X05_20260 PF00919 Uncharacterized protein family UPF0004 I3X05_20260 PF04055 Radical SAM superfamily I3X05_20265 PF02806 Alpha amylase, C-terminal all-beta domain I3X05_20265 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) I3X05_20265 PF00128 Alpha amylase, catalytic domain I3X05_20270 PF02446 4-alpha-glucanotransferase I3X05_20275 PF00343 Carbohydrate phosphorylase I3X05_20280 PF00196 Bacterial regulatory proteins, luxR family I3X05_20280 PF17874 MalT-like TPR region I3X05_20295 PF00686 Starch binding domain I3X05_20295 PF00128 Alpha amylase, catalytic domain I3X05_20300 PF17912 MalK OB fold domain I3X05_20300 PF00005 ABC transporter I3X05_20300 PF03459 TOBE domain I3X05_20310 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD I3X05_20310 PF00132 Bacterial transferase hexapeptide (six repeats) I3X05_20320 PF13416 Bacterial extracellular solute-binding protein I3X05_20325 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_20330 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_20335 PF02903 Alpha amylase, N-terminal ig-like domain I3X05_20335 PF16657 Maltogenic Amylase, C-terminal domain I3X05_20335 PF00128 Alpha amylase, catalytic domain I3X05_20355 PF18494 Pullulanase Ins domain I3X05_20355 PF11852 Domain of unknown function (DUF3372) I3X05_20355 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) I3X05_20355 PF03714 Bacterial pullanase-associated domain I3X05_20355 PF17967 Pullulanase N2 domain I3X05_20360 PF00593 TonB dependent receptor I3X05_20360 PF07715 TonB-dependent Receptor Plug Domain I3X05_20365 PF11806 Domain of unknown function (DUF3327) I3X05_20365 PF00756 Putative esterase I3X05_20370 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 I3X05_20370 PF13542 Helix-turn-helix domain of transposase family ISL3 I3X05_20370 PF01610 Transposase I3X05_20375 PF00375 Sodium:dicarboxylate symporter family I3X05_20380 PF03193 RsgA GTPase I3X05_20390 PF02630 SCO1/SenC I3X05_20400 PF01037 Lrp/AsnC ligand binding domain I3X05_20415 PF00474 Sodium:solute symporter family I3X05_20425 PF01619 Proline dehydrogenase I3X05_20425 PF14850 DNA-binding domain of Proline dehydrogenase I3X05_20425 PF18327 Proline utilization A proline dehydrogenase N-terminal domain I3X05_20425 PF00171 Aldehyde dehydrogenase family I3X05_20430 PF12833 Helix-turn-helix domain I3X05_20435 PF00196 Bacterial regulatory proteins, luxR family I3X05_20435 PF00072 Response regulator receiver domain I3X05_20440 PF01243 Pyridoxamine 5'-phosphate oxidase I3X05_20440 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region I3X05_20445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_20445 PF00512 His Kinase A (phospho-acceptor) domain I3X05_20445 PF02743 Cache domain I3X05_20450 PF00158 Sigma-54 interaction domain I3X05_20450 PF00072 Response regulator receiver domain I3X05_20450 PF02954 Bacterial regulatory protein, Fis family I3X05_20455 PF00529 HlyD membrane-fusion protein of T1SS I3X05_20470 PF00005 ABC transporter I3X05_20470 PF00664 ABC transporter transmembrane region I3X05_20470 PF03412 Peptidase C39 family I3X05_20475 PF01406 tRNA synthetases class I (C) catalytic domain I3X05_20485 PF13718 GNAT acetyltransferase 2 I3X05_20485 PF05127 Helicase I3X05_20490 PF08775 ParB family I3X05_20490 PF02195 ParB-like nuclease domain I3X05_20495 PF13614 AAA domain I3X05_20495 PF18607 ParA helix turn helix domain I3X05_20505 PF03413 Peptidase propeptide and YPEB domain I3X05_20505 PF04151 Bacterial pre-peptidase C-terminal domain I3X05_20505 PF02868 Thermolysin metallopeptidase, alpha-helical domain I3X05_20505 PF07504 Fungalysin/Thermolysin Propeptide Motif I3X05_20505 PF01447 Thermolysin metallopeptidase, catalytic domain I3X05_20510 PF04986 Putative transposase I3X05_20510 PF14319 Transposase zinc-binding domain I3X05_20535 PF01709 Transcriptional regulator I3X05_20545 PF00005 ABC transporter I3X05_20565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_20565 PF06580 Histidine kinase I3X05_20565 PF07694 5TMR of 5TMR-LYT I3X05_20570 PF04397 LytTr DNA-binding domain I3X05_20570 PF00072 Response regulator receiver domain I3X05_20575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_20575 PF00672 HAMP domain I3X05_20575 PF17200 Single Cache domain 2 I3X05_20580 PF03616 Sodium/glutamate symporter I3X05_20585 PF03616 Sodium/glutamate symporter I3X05_20595 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase I3X05_20610 PF02951 Prokaryotic glutathione synthetase, N-terminal domain I3X05_20610 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain I3X05_20620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_20620 PF03466 LysR substrate binding domain I3X05_20630 PF06029 AlkA N-terminal domain I3X05_20630 PF00730 HhH-GPD superfamily base excision DNA repair protein I3X05_20635 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain I3X05_20635 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain I3X05_20640 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 I3X05_20650 PF03600 Citrate transporter I3X05_20665 PF08329 Chitinase A, N-terminal domain I3X05_20665 PF00704 Glycosyl hydrolases family 18 I3X05_20675 PF06865 Pyrimidine/purine nucleoside phosphorylase I3X05_20700 PF05114 Protein of unknown function (DUF692) I3X05_20715 PF02678 Pirin I3X05_20715 PF05726 Pirin C-terminal cupin domain I3X05_20725 PF00563 EAL domain I3X05_20725 PF00990 Diguanylate cyclase, GGDEF domain I3X05_20730 PF00128 Alpha amylase, catalytic domain I3X05_20730 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) I3X05_20735 PF02264 LamB porin I3X05_20740 PF07148 Maltose operon periplasmic protein precursor (MalM) I3X05_20755 PF01547 Bacterial extracellular solute-binding protein I3X05_20760 PF02903 Alpha amylase, N-terminal ig-like domain I3X05_20760 PF00128 Alpha amylase, catalytic domain I3X05_20760 PF16657 Maltogenic Amylase, C-terminal domain I3X05_20775 PF00005 ABC transporter I3X05_20775 PF00664 ABC transporter transmembrane region I3X05_20785 PF00270 DEAD/DEAH box helicase I3X05_20785 PF00271 Helicase conserved C-terminal domain I3X05_20800 PF00313 'Cold-shock' DNA-binding domain I3X05_20805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_20805 PF00672 HAMP domain I3X05_20855 PF00270 DEAD/DEAH box helicase I3X05_20855 PF00271 Helicase conserved C-terminal domain I3X05_20860 PF03466 LysR substrate binding domain I3X05_20860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_20885 PF00501 AMP-binding enzyme I3X05_20905 PF00072 Response regulator receiver domain I3X05_20905 PF00486 Transcriptional regulatory protein, C terminal I3X05_20910 PF00512 His Kinase A (phospho-acceptor) domain I3X05_20910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_20910 PF08521 Two-component sensor kinase N-terminal I3X05_20915 PF00849 RNA pseudouridylate synthase I3X05_20925 PF05114 Protein of unknown function (DUF692) I3X05_20955 PF00155 Aminotransferase class I and II I3X05_20955 PF00392 Bacterial regulatory proteins, gntR family I3X05_20960 PF00892 EamA-like transporter family I3X05_20970 PF02678 Pirin I3X05_20970 PF17954 Quercetinase C-terminal cupin domain I3X05_20975 PF07681 DoxX I3X05_20980 PF00128 Alpha amylase, catalytic domain I3X05_20985 PF00455 DeoR C terminal sensor domain I3X05_20985 PF08220 DeoR-like helix-turn-helix domain I3X05_20990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold I3X05_20990 PF02894 Oxidoreductase family, C-terminal alpha/beta domain I3X05_20995 PF03928 Haem-degrading I3X05_21000 PF01479 S4 domain I3X05_21000 PF00579 tRNA synthetases class I (W and Y) I3X05_21005 PF00196 Bacterial regulatory proteins, luxR family I3X05_21010 PF00581 Rhodanese-like domain I3X05_21015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_21015 PF03466 LysR substrate binding domain I3X05_21025 PF00563 EAL domain I3X05_21025 PF00990 Diguanylate cyclase, GGDEF domain I3X05_21025 PF03707 Bacterial signalling protein N terminal repeat I3X05_21030 PF02954 Bacterial regulatory protein, Fis family I3X05_21030 PF01590 GAF domain I3X05_21030 PF00158 Sigma-54 interaction domain I3X05_21035 PF00171 Aldehyde dehydrogenase family I3X05_21040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_21040 PF02743 Cache domain I3X05_21040 PF00672 HAMP domain I3X05_21050 PF04389 Peptidase family M28 I3X05_21050 PF04151 Bacterial pre-peptidase C-terminal domain I3X05_21055 PF00271 Helicase conserved C-terminal domain I3X05_21055 PF00270 DEAD/DEAH box helicase I3X05_21065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily I3X05_21070 PF01408 Oxidoreductase family, NAD-binding Rossmann fold I3X05_21080 PF00005 ABC transporter I3X05_21095 PF01380 SIS domain I3X05_21095 PF01418 Helix-turn-helix domain, rpiR family I3X05_21105 PF07969 Amidohydrolase family I3X05_21115 PF00294 pfkB family carbohydrate kinase I3X05_21120 PF02838 Glycosyl hydrolase family 20, domain 2 I3X05_21120 PF00728 Glycosyl hydrolase family 20, catalytic domain I3X05_21125 PF10282 Lactonase, 7-bladed beta-propeller I3X05_21130 PF01042 Endoribonuclease L-PSP I3X05_21135 PF13419 Haloacid dehalogenase-like hydrolase I3X05_21140 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase I3X05_21140 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase I3X05_21150 PF01339 CheB methylesterase I3X05_21150 PF00072 Response regulator receiver domain I3X05_21155 PF03975 CheD chemotactic sensory transduction I3X05_21160 PF01739 CheR methyltransferase, SAM binding domain I3X05_21160 PF03705 CheR methyltransferase, all-alpha domain I3X05_21165 PF01584 CheW-like domain I3X05_21170 PF00672 HAMP domain I3X05_21170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_21170 PF02203 Tar ligand binding domain homologue I3X05_21175 PF01584 CheW-like domain I3X05_21180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_21180 PF01584 CheW-like domain I3X05_21180 PF02895 Signal transducing histidine kinase, homodimeric domain I3X05_21180 PF01627 Hpt domain I3X05_21190 PF00072 Response regulator receiver domain I3X05_21195 PF02743 Cache domain I3X05_21195 PF00672 HAMP domain I3X05_21195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_21210 PF07670 Nucleoside recognition I3X05_21210 PF07662 Na+ dependent nucleoside transporter C-terminus I3X05_21210 PF01773 Na+ dependent nucleoside transporter N-terminus I3X05_21215 PF10928 Protein of unknown function (DUF2810) I3X05_21220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain I3X05_21220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain I3X05_21235 PF00056 lactate/malate dehydrogenase, NAD binding domain I3X05_21235 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain I3X05_21245 PF13416 Bacterial extracellular solute-binding protein I3X05_21260 PF01906 Putative heavy-metal-binding I3X05_21265 PF01966 HD domain I3X05_21290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_21290 PF03466 LysR substrate binding domain I3X05_21295 PF07690 Major Facilitator Superfamily I3X05_21305 PF00082 Subtilase family I3X05_21305 PF05922 Peptidase inhibitor I9 I3X05_21305 PF05922 Peptidase inhibitor I9 I3X05_21305 PF00082 Subtilase family I3X05_21310 PF00657 GDSL-like Lipase/Acylhydrolase I3X05_21315 PF00155 Aminotransferase class I and II I3X05_21320 PF08240 Alcohol dehydrogenase GroES-like domain I3X05_21320 PF00107 Zinc-binding dehydrogenase I3X05_21340 PF13676 TIR domain I3X05_21360 PF13808 DDE_Tnp_1-associated I3X05_21360 PF01609 Transposase DDE domain I3X05_21375 PF00313 'Cold-shock' DNA-binding domain I3X05_21390 PF12833 Helix-turn-helix domain I3X05_21395 PF02627 Carboxymuconolactone decarboxylase family I3X05_21400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_21400 PF02743 Cache domain I3X05_21400 PF00672 HAMP domain I3X05_21405 PF06628 Catalase-related immune-responsive I3X05_21405 PF00199 Catalase I3X05_21420 PF09278 MerR, DNA binding I3X05_21420 PF00376 MerR family regulatory protein I3X05_21430 PF00579 tRNA synthetases class I (W and Y) I3X05_21435 PF00166 Chaperonin 10 Kd subunit I3X05_21440 PF00118 TCP-1/cpn60 chaperonin family I3X05_21450 PF01380 SIS domain I3X05_21450 PF01418 Helix-turn-helix domain, rpiR family I3X05_21455 PF13580 SIS domain I3X05_21460 PF02378 Phosphotransferase system, EIIC I3X05_21460 PF00367 phosphotransferase system, EIIB I3X05_21465 PF01752 Collagenase I3X05_21465 PF08453 Peptidase family M9 N-terminal I3X05_21465 PF04151 Bacterial pre-peptidase C-terminal domain I3X05_21475 PF00672 HAMP domain I3X05_21475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_21480 PF01168 Alanine racemase, N-terminal domain I3X05_21480 PF00842 Alanine racemase, C-terminal domain I3X05_21490 PF00210 Ferritin-like domain I3X05_21510 PF00873 AcrB/AcrD/AcrF family I3X05_21515 PF01022 Bacterial regulatory protein, arsR family I3X05_21520 PF01758 Sodium Bile acid symporter family I3X05_21525 PF01895 PhoU domain I3X05_21530 PF00005 ABC transporter I3X05_21535 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_21540 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_21555 PF01022 Bacterial regulatory protein, arsR family I3X05_21560 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain I3X05_21560 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain I3X05_21595 PF04973 Nicotinamide mononucleotide transporter I3X05_21600 PF01048 Phosphorylase superfamily I3X05_21615 PF08267 Cobalamin-independent synthase, N-terminal domain I3X05_21615 PF01717 Cobalamin-independent synthase, Catalytic domain I3X05_21620 PF02311 AraC-like ligand binding domain I3X05_21620 PF12833 Helix-turn-helix domain I3X05_21625 PF00857 Isochorismatase family I3X05_21635 PF03466 LysR substrate binding domain I3X05_21635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_21640 PF00375 Sodium:dicarboxylate symporter family I3X05_21645 PF00881 Nitroreductase family I3X05_21650 PF05958 tRNA (Uracil-5-)-methyltransferase I3X05_21670 PF00392 Bacterial regulatory proteins, gntR family I3X05_21670 PF00155 Aminotransferase class I and II I3X05_21685 PF04231 Endonuclease I I3X05_21690 PF02903 Alpha amylase, N-terminal ig-like domain I3X05_21690 PF00128 Alpha amylase, catalytic domain I3X05_21695 PF00884 Sulfatase I3X05_21700 PF08019 Phosphoethanolamine transferase EptA/EptB I3X05_21700 PF00884 Sulfatase I3X05_21705 PF01219 Prokaryotic diacylglycerol kinase I3X05_21710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_21710 PF00672 HAMP domain I3X05_21710 PF00512 His Kinase A (phospho-acceptor) domain I3X05_21715 PF00486 Transcriptional regulatory protein, C terminal I3X05_21715 PF00072 Response regulator receiver domain I3X05_21720 PF13460 NAD(P)H-binding I3X05_21725 PF03466 LysR substrate binding domain I3X05_21725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_21735 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase I3X05_21745 PF12793 Sugar transport-related sRNA regulator N-term I3X05_21745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle I3X05_21770 PF01569 PAP2 superfamily I3X05_21775 PF08543 Phosphomethylpyrimidine kinase I3X05_21780 PF04013 Putative SAM-dependent RNA methyltransferase I3X05_21845 PF13358 DDE superfamily endonuclease I3X05_21865 PF03050 Transposase IS66 family I3X05_21865 PF13005 zinc-finger binding domain of transposase IS66 I3X05_21865 PF13007 Transposase C of IS166 homeodomain I3X05_21865 PF13817 IS66 C-terminal element I3X05_21885 PF00194 Eukaryotic-type carbonic anhydrase I3X05_21890 PF00924 Mechanosensitive ion channel I3X05_21905 PF00571 CBS domain I3X05_21905 PF03448 MgtE intracellular N domain I3X05_21905 PF01769 Divalent cation transporter I3X05_21910 PF00155 Aminotransferase class I and II I3X05_21910 PF00392 Bacterial regulatory proteins, gntR family I3X05_21915 PF13230 Glutamine amidotransferases class-II I3X05_21920 PF13520 Amino acid permease I3X05_21930 PF03466 LysR substrate binding domain I3X05_21930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_21940 PF08534 Redoxin I3X05_21940 PF00462 Glutaredoxin I3X05_21945 PF00709 Adenylosuccinate synthetase I3X05_21950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_21950 PF03466 LysR substrate binding domain I3X05_21960 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain I3X05_21960 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain I3X05_21965 PF01627 Hpt domain I3X05_21965 PF00512 His Kinase A (phospho-acceptor) domain I3X05_21965 PF00672 HAMP domain I3X05_21965 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) I3X05_21965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_21965 PF00072 Response regulator receiver domain I3X05_21970 PF01554 MatE I3X05_21975 PF04363 Protein of unknown function (DUF496) I3X05_21985 PF04337 Protein of unknown function, DUF480 I3X05_21990 PF01541 GIY-YIG catalytic domain I3X05_22000 PF13407 Periplasmic binding protein domain I3X05_22005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_22005 PF00072 Response regulator receiver domain I3X05_22005 PF09308 LuxQ, periplasmic I3X05_22005 PF00512 His Kinase A (phospho-acceptor) domain I3X05_22020 PF01037 Lrp/AsnC ligand binding domain I3X05_22035 PF07549 SecD/SecF GG Motif I3X05_22035 PF13721 SecD export protein N-terminal TM region I3X05_22035 PF02355 Protein export membrane protein I3X05_22040 PF07549 SecD/SecF GG Motif I3X05_22040 PF02355 Protein export membrane protein I3X05_22045 PF00106 short chain dehydrogenase I3X05_22050 PF00108 Thiolase, N-terminal domain I3X05_22050 PF02803 Thiolase, C-terminal domain I3X05_22060 PF00561 alpha/beta hydrolase fold I3X05_22060 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus I3X05_22070 PF03264 NapC/NirT cytochrome c family, N-terminal region I3X05_22075 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) I3X05_22080 PF01568 Molydopterin dinucleotide binding domain I3X05_22080 PF00384 Molybdopterin oxidoreductase I3X05_22080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain I3X05_22090 PF12838 4Fe-4S dicluster domain I3X05_22090 PF13187 4Fe-4S dicluster domain I3X05_22095 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term I3X05_22095 PF00672 HAMP domain I3X05_22095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_22095 PF07730 Histidine kinase I3X05_22100 PF00196 Bacterial regulatory proteins, luxR family I3X05_22100 PF00072 Response regulator receiver domain I3X05_22110 PF00072 Response regulator receiver domain I3X05_22110 PF01339 CheB methylesterase I3X05_22130 PF00478 IMP dehydrogenase / GMP reductase domain I3X05_22135 PF01547 Bacterial extracellular solute-binding protein I3X05_22140 PF08244 Glycosyl hydrolases family 32 C terminal I3X05_22140 PF00251 Glycosyl hydrolases family 32 N-terminal domain I3X05_22145 PF03466 LysR substrate binding domain I3X05_22145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_22165 PF01272 Transcription elongation factor, GreA/GreB, C-term I3X05_22165 PF14760 Rnk N-terminus I3X05_22170 PF00892 EamA-like transporter family I3X05_22175 PF11849 Domain of unknown function (DUF3369) I3X05_22185 PF00990 Diguanylate cyclase, GGDEF domain I3X05_22185 PF05230 MASE2 domain I3X05_22190 PF06481 COX Aromatic Rich Motif I3X05_22190 PF00116 Cytochrome C oxidase subunit II, periplasmic domain I3X05_22195 PF00115 Cytochrome C and Quinol oxidase polypeptide I I3X05_22200 PF00510 Cytochrome c oxidase subunit III I3X05_22210 PF01040 UbiA prenyltransferase family I3X05_22220 PF00583 Acetyltransferase (GNAT) family I3X05_22225 PF00202 Aminotransferase class-III I3X05_22230 PF06339 Ectoine synthase I3X05_22235 PF13840 ACT domain I3X05_22235 PF00696 Amino acid kinase family I3X05_22245 PF13192 Thioredoxin domain I3X05_22245 PF07992 Pyridine nucleotide-disulphide oxidoreductase I3X05_22250 PF00578 AhpC/TSA family I3X05_22250 PF10417 C-terminal domain of 1-Cys peroxiredoxin I3X05_22260 PF00682 HMGL-like I3X05_22265 PF00378 Enoyl-CoA hydratase/isomerase I3X05_22270 PF01039 Carboxyl transferase domain I3X05_22275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain I3X05_22275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain I3X05_22275 PF02770 Acyl-CoA dehydrogenase, middle domain I3X05_22280 PF09278 MerR, DNA binding I3X05_22280 PF00376 MerR family regulatory protein I3X05_22285 PF00108 Thiolase, N-terminal domain I3X05_22285 PF02803 Thiolase, C-terminal domain I3X05_22290 PF00171 Aldehyde dehydrogenase family I3X05_22295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain I3X05_22295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain I3X05_22295 PF02770 Acyl-CoA dehydrogenase, middle domain I3X05_22300 PF00378 Enoyl-CoA hydratase/isomerase I3X05_22305 PF00378 Enoyl-CoA hydratase/isomerase I3X05_22310 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase I3X05_22310 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase I3X05_22335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_22335 PF03466 LysR substrate binding domain I3X05_22340 PF07690 Major Facilitator Superfamily I3X05_22345 PF00875 DNA photolyase I3X05_22345 PF03441 FAD binding domain of DNA photolyase I3X05_22350 PF00893 Small Multidrug Resistance protein I3X05_22355 PF00958 GMP synthase C terminal domain I3X05_22355 PF00117 Glutamine amidotransferase class-I I3X05_22355 PF02540 NAD synthase I3X05_22365 PF01012 Electron transfer flavoprotein domain I3X05_22370 PF01012 Electron transfer flavoprotein domain I3X05_22370 PF00766 Electron transfer flavoprotein FAD-binding domain I3X05_22375 PF00364 Biotin-requiring enzyme I3X05_22375 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) I3X05_22375 PF02817 e3 binding domain I3X05_22380 PF02780 Transketolase, C-terminal domain I3X05_22380 PF02779 Transketolase, pyrimidine binding domain I3X05_22385 PF00676 Dehydrogenase E1 component I3X05_22390 PF00962 Adenosine/AMP deaminase I3X05_22400 PF11849 Domain of unknown function (DUF3369) I3X05_22405 PF00512 His Kinase A (phospho-acceptor) domain I3X05_22405 PF00497 Bacterial extracellular solute-binding proteins, family 3 I3X05_22405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_22420 PF00012 Hsp70 protein I3X05_22445 PF12843 Putative quorum-sensing-regulated virulence factor I3X05_22450 PF00440 Bacterial regulatory proteins, tetR family I3X05_22450 PF13977 BetI-type transcriptional repressor, C-terminal I3X05_22465 PF03466 LysR substrate binding domain I3X05_22465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_22490 PF04816 tRNA (adenine(22)-N(1))-methyltransferase I3X05_22495 PF02492 CobW/HypB/UreG, nucleotide-binding domain I3X05_22495 PF07683 Cobalamin synthesis protein cobW C-terminal domain I3X05_22500 PF00271 Helicase conserved C-terminal domain I3X05_22500 PF00270 DEAD/DEAH box helicase I3X05_22515 PF07694 5TMR of 5TMR-LYT I3X05_22515 PF00990 Diguanylate cyclase, GGDEF domain I3X05_22520 PF01339 CheB methylesterase I3X05_22525 PF03705 CheR methyltransferase, all-alpha domain I3X05_22525 PF01739 CheR methyltransferase, SAM binding domain I3X05_22530 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) I3X05_22530 PF00512 His Kinase A (phospho-acceptor) domain I3X05_22530 PF01627 Hpt domain I3X05_22530 PF00672 HAMP domain I3X05_22530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_22530 PF00072 Response regulator receiver domain I3X05_22535 PF01575 MaoC like domain I3X05_22540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_22540 PF08447 PAS fold I3X05_22545 PF00990 Diguanylate cyclase, GGDEF domain I3X05_22545 PF03707 Bacterial signalling protein N terminal repeat I3X05_22545 PF00563 EAL domain I3X05_22560 PF00456 Transketolase, thiamine diphosphate binding domain I3X05_22560 PF02780 Transketolase, C-terminal domain I3X05_22560 PF02779 Transketolase, pyrimidine binding domain I3X05_22565 PF00923 Transaldolase/Fructose-6-phosphate aldolase I3X05_22575 PF00704 Glycosyl hydrolases family 18 I3X05_22575 PF08329 Chitinase A, N-terminal domain I3X05_22580 PF13426 PAS domain I3X05_22580 PF00990 Diguanylate cyclase, GGDEF domain I3X05_22580 PF00563 EAL domain I3X05_22585 PF00581 Rhodanese-like domain I3X05_22590 PF00899 ThiF family I3X05_22595 PF03454 MoeA C-terminal region (domain IV) I3X05_22595 PF03453 MoeA N-terminal region (domain I and II) I3X05_22595 PF00994 Probable molybdopterin binding domain I3X05_22600 PF01227 GTP cyclohydrolase I I3X05_22610 PF00654 Voltage gated chloride channel I3X05_22630 PF00248 Aldo/keto reductase family I3X05_22640 PF07687 Peptidase dimerisation domain I3X05_22640 PF01546 Peptidase family M20/M25/M40 I3X05_22645 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region I3X05_22650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_22650 PF00672 HAMP domain I3X05_22650 PF12729 Four helix bundle sensory module for signal transduction I3X05_22655 PF00472 RF-1 domain I3X05_22660 PF13419 Haloacid dehalogenase-like hydrolase I3X05_22665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase I3X05_22665 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase I3X05_22695 PF00313 'Cold-shock' DNA-binding domain I3X05_22700 PF03889 Alternative ribosome-rescue factor A I3X05_22710 PF00672 HAMP domain I3X05_22710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_22710 PF17200 Single Cache domain 2 I3X05_22715 PF17158 Membrane-associated sensor, integral membrane domain I3X05_22715 PF00990 Diguanylate cyclase, GGDEF domain I3X05_22725 PF03466 LysR substrate binding domain I3X05_22725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_22740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle I3X05_22745 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_22750 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_22755 PF00005 ABC transporter I3X05_22755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_22760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_22760 PF00005 ABC transporter I3X05_22770 PF00356 Bacterial regulatory proteins, lacI family I3X05_22775 PF02264 LamB porin I3X05_22790 PF00722 Glycosyl hydrolases family 16 I3X05_22790 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) I3X05_22800 PF13542 Helix-turn-helix domain of transposase family ISL3 I3X05_22800 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 I3X05_22800 PF01610 Transposase I3X05_22805 PF00722 Glycosyl hydrolases family 16 I3X05_22810 PF02264 LamB porin I3X05_22815 PF02311 AraC-like ligand binding domain I3X05_22815 PF12833 Helix-turn-helix domain I3X05_22820 PF00933 Glycosyl hydrolase family 3 N terminal domain I3X05_22820 PF01915 Glycosyl hydrolase family 3 C-terminal domain I3X05_22820 PF14310 Fibronectin type III-like domain I3X05_22825 PF01554 MatE I3X05_22835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain I3X05_22835 PF00205 Thiamine pyrophosphate enzyme, central domain I3X05_22835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain I3X05_22840 PF01593 Flavin containing amine oxidoreductase I3X05_22855 PF03466 LysR substrate binding domain I3X05_22855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family I3X05_22860 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus I3X05_22860 PF00361 Proton-conducting membrane transporter I3X05_22860 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus I3X05_22865 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) I3X05_22870 PF13520 Amino acid permease I3X05_22875 PF05985 Ethanolamine ammonia-lyase light chain (EutC) I3X05_22880 PF06751 Ethanolamine ammonia lyase large subunit (EutB) I3X05_22885 PF12833 Helix-turn-helix domain I3X05_22890 PF00356 Bacterial regulatory proteins, lacI family I3X05_22900 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_22905 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_22910 PF00232 Glycosyl hydrolase family 1 I3X05_22915 PF00005 ABC transporter I3X05_22915 PF08402 TOBE domain I3X05_22920 PF06165 Glycosyltransferase family 36 I3X05_22920 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain I3X05_22925 PF01263 Aldose 1-epimerase I3X05_22935 PF00356 Bacterial regulatory proteins, lacI family I3X05_22940 PF00404 Dockerin type I domain I3X05_22940 PF02018 Carbohydrate binding domain I3X05_22940 PF00759 Glycosyl hydrolase family 9 I3X05_22940 PF02927 Cellulase N-terminal ig-like domain I3X05_22960 PF02743 Cache domain I3X05_22960 PF00672 HAMP domain I3X05_22960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_22970 PF01032 FecCD transport family I3X05_22975 PF00005 ABC transporter I3X05_22990 PF16884 N-terminal domain of oxidoreductase I3X05_22990 PF00107 Zinc-binding dehydrogenase I3X05_22995 PF00440 Bacterial regulatory proteins, tetR family I3X05_22995 PF16925 Tetracyclin repressor-like, C-terminal domain I3X05_23000 PF00270 DEAD/DEAH box helicase I3X05_23000 PF00271 Helicase conserved C-terminal domain I3X05_23000 PF03880 DbpA RNA binding domain I3X05_23005 PF00582 Universal stress protein family I3X05_23010 PF00916 Sulfate permease family I3X05_23010 PF01740 STAS domain I3X05_23015 PF01497 Periplasmic binding protein I3X05_23020 PF01032 FecCD transport family I3X05_23025 PF01032 FecCD transport family I3X05_23030 PF00005 ABC transporter I3X05_23035 PF13411 MerR HTH family regulatory protein I3X05_23040 PF12833 Helix-turn-helix domain I3X05_23040 PF06445 GyrI-like small molecule binding domain I3X05_23045 PF07715 TonB-dependent Receptor Plug Domain I3X05_23045 PF04886 PT repeat I3X05_23045 PF00593 TonB dependent receptor I3X05_23070 PF12805 FUSC-like inner membrane protein yccS I3X05_23075 PF13361 UvrD-like helicase C-terminal domain I3X05_23075 PF00580 UvrD/REP helicase N-terminal domain I3X05_23075 PF12462 DNA helicase IV / RNA helicase N terminal I3X05_23080 PF02142 MGS-like domain I3X05_23085 PF02142 MGS-like domain I3X05_23090 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family I3X05_23095 PF00072 Response regulator receiver domain I3X05_23095 PF01627 Hpt domain I3X05_23095 PF00512 His Kinase A (phospho-acceptor) domain I3X05_23095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase I3X05_23095 PF00672 HAMP domain I3X05_23115 PF03781 Sulfatase-modifying factor enzyme 1 I3X05_23120 PF18081 Fanconi anemia-associated nuclease SAP domain I3X05_23120 PF08774 VRR-NUC domain I3X05_23135 PF03606 C4-dicarboxylate anaerobic carrier I3X05_23150 PF00672 HAMP domain I3X05_23150 PF02743 Cache domain I3X05_23150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_23160 PF01124 MAPEG family I3X05_23170 PF04266 ASCH domain I3X05_23175 PF04151 Bacterial pre-peptidase C-terminal domain I3X05_23175 PF01752 Collagenase I3X05_23175 PF08453 Peptidase family M9 N-terminal I3X05_23185 PF09722 Protein of unknown function (DUF2384) I3X05_23195 PF13802 Galactose mutarotase-like I3X05_23195 PF16338 Domain of unknown function (DUF4968) I3X05_23195 PF17137 Domain of unknown function (DUF5110) I3X05_23195 PF01055 Glycosyl hydrolases family 31 I3X05_23200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle I3X05_23205 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_23210 PF00528 Binding-protein-dependent transport system inner membrane component I3X05_23210 PF12911 N-terminal TM domain of oligopeptide transport permease C I3X05_23215 PF00005 ABC transporter I3X05_23215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region I3X05_23305 PF03830 PTS system sorbose subfamily IIB component I3X05_23310 PF03609 PTS system sorbose-specific iic component I3X05_23315 PF03613 PTS system mannose/fructose/sorbose family IID component I3X05_23335 PF09092 Lyase, N terminal I3X05_23335 PF02278 Polysaccharide lyase family 8, super-sandwich domain I3X05_23335 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain I3X05_23335 PF09093 Lyase, catalytic I3X05_23340 PF02278 Polysaccharide lyase family 8, super-sandwich domain I3X05_23340 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain I3X05_23340 PF09093 Lyase, catalytic I3X05_23340 PF09092 Lyase, N terminal I3X05_23350 PF00884 Sulfatase I3X05_23355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain I3X05_23355 PF00672 HAMP domain I3X05_23365 PF01081 KDPG and KHG aldolase I3X05_23370 PF00294 pfkB family carbohydrate kinase I3X05_23375 PF01116 Fructose-bisphosphate aldolase class-II I3X05_23385 PF00884 Sulfatase I3X05_23390 PF04055 Radical SAM superfamily I3X05_23390 PF13186 Iron-sulfur cluster-binding domain I3X05_23395 PF02278 Polysaccharide lyase family 8, super-sandwich domain I3X05_23395 PF09092 Lyase, N terminal I3X05_23395 PF09093 Lyase, catalytic I3X05_23395 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain I3X05_23400 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain I3X05_23400 PF09092 Lyase, N terminal I3X05_23400 PF02278 Polysaccharide lyase family 8, super-sandwich domain I3X05_23400 PF09093 Lyase, catalytic I3X05_23410 PF07470 Glycosyl Hydrolase Family 88 I3X05_23420 PF04962 KduI/IolB family I3X05_23425 PF01979 Amidohydrolase family I3X05_23435 PF03613 PTS system mannose/fructose/sorbose family IID component I3X05_23440 PF03609 PTS system sorbose-specific iic component I3X05_23445 PF03830 PTS system sorbose subfamily IIB component I3X05_23450 PF01380 SIS domain I3X05_23455 PF08013 Tagatose 6 phosphate kinase I3X05_23460 PF00884 Sulfatase I3X05_23500 PF00717 Peptidase S24-like I3X05_23505 PF11799 impB/mucB/samB family C-terminal domain I3X05_23505 PF00817 impB/mucB/samB family I3X05_23505 PF13438 Domain of unknown function (DUF4113) I3X05_23530 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system I3X05_23535 PF13614 AAA domain I3X05_23540 PF08775 ParB family I3X05_23540 PF02195 ParB-like nuclease domain I3X05_23545 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) I3X05_23555 PF00529 HlyD membrane-fusion protein of T1SS I3X05_23560 PF00664 ABC transporter transmembrane region I3X05_23560 PF00005 ABC transporter I3X05_23570 PF01348 Type II intron maturase I3X05_23570 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) I3X05_23575 PF13808 DDE_Tnp_1-associated I3X05_23575 PF01609 Transposase DDE domain I3X05_23595 PF03050 Transposase IS66 family I3X05_23595 PF13007 Transposase C of IS166 homeodomain I3X05_23595 PF13817 IS66 C-terminal element I3X05_23595 PF13005 zinc-finger binding domain of transposase IS66 I3X05_23655 PF08220 DeoR-like helix-turn-helix domain I3X05_23655 PF00455 DeoR C terminal sensor domain I3X05_23670 PF13007 Transposase C of IS166 homeodomain I3X05_23670 PF03050 Transposase IS66 family I3X05_23670 PF13817 IS66 C-terminal element I3X05_23670 PF13005 zinc-finger binding domain of transposase IS66 I3X05_23805 PF13958 Toxin ToxN, type III toxin-antitoxin system I3X05_23840 PF03050 Transposase IS66 family I3X05_23840 PF13005 zinc-finger binding domain of transposase IS66 I3X05_23840 PF13007 Transposase C of IS166 homeodomain I3X05_23840 PF13817 IS66 C-terminal element I3X05_23865 PF01810 LysE type translocator I3X05_23875 PF05973 Phage derived protein Gp49-like (DUF891) I3X05_23925 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system I3X05_23940 PF08242 Methyltransferase domain I3X05_24000 PF18340 DNA relaxase TraI 2B/2B-like domain I3X05_24000 PF18272 single-stranded DNA binding TraI N-terminal subdomain I3X05_24000 PF08751 TrwC relaxase I3X05_24000 PF07057 DNA helicase TraI I3X05_24005 PF10412 Type IV secretion-system coupling protein DNA-binding domain I3X05_24005 PF12615 F sex factor protein N terminal I3X05_24015 PF07916 TraG-like protein, N-terminal region I3X05_24030 PF13728 F plasmid transfer operon protein I3X05_24035 PF06986 Type-1V conjugative transfer system mating pair stabilisation I3X05_24045 PF06834 TraU protein I3X05_24055 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer