locus-tag class description D3H41_00005 PF00308 Bacterial dnaA protein D3H41_00005 PF08299 Bacterial dnaA protein helix-turn-helix D3H41_00005 PF11638 DnaA N-terminal domain D3H41_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain D3H41_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain D3H41_00010 PF02767 DNA polymerase III beta subunit, central domain D3H41_00015 PF02463 RecF/RecN/SMC N terminal domain D3H41_00020 PF00204 DNA gyrase B D3H41_00020 PF00986 DNA gyrase B subunit, carboxyl terminus D3H41_00020 PF18053 DNA gyrase B subunit insert domain D3H41_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_00020 PF01751 Toprim domain D3H41_00035 PF00011 Hsp20/alpha crystallin family D3H41_00040 PF00155 Aminotransferase class I and II D3H41_00045 PF00128 Alpha amylase, catalytic domain D3H41_00050 PF05746 DALR anticodon binding domain D3H41_00050 PF02092 Glycyl-tRNA synthetase beta subunit D3H41_00055 PF02091 Glycyl-tRNA synthetase alpha subunit D3H41_00060 PF01169 Uncharacterized protein family UPF0016 D3H41_00070 PF01206 Sulfurtransferase TusA D3H41_00080 PF03466 LysR substrate binding domain D3H41_00080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_00085 PF08240 Alcohol dehydrogenase GroES-like domain D3H41_00085 PF00107 Zinc-binding dehydrogenase D3H41_00090 PF02803 Thiolase, C-terminal domain D3H41_00090 PF00108 Thiolase, N-terminal domain D3H41_00095 PF00378 Enoyl-CoA hydratase/isomerase D3H41_00095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D3H41_00095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D3H41_00100 PF09186 Domain of unknown function (DUF1949) D3H41_00100 PF01205 Uncharacterized protein family UPF0029 D3H41_00105 PF02386 Cation transport protein D3H41_00110 PF12724 Flavodoxin domain D3H41_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_00145 PF03466 LysR substrate binding domain D3H41_00150 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D3H41_00150 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D3H41_00155 PF04380 Membrane fusogenic activity D3H41_00160 PF00873 AcrB/AcrD/AcrF family D3H41_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3H41_00170 PF16295 Tetracyclin repressor-like, C-terminal domain D3H41_00170 PF00440 Bacterial regulatory proteins, tetR family D3H41_00175 PF00580 UvrD/REP helicase N-terminal domain D3H41_00175 PF13361 UvrD-like helicase C-terminal domain D3H41_00180 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3H41_00210 PF13419 Haloacid dehalogenase-like hydrolase D3H41_00220 PF00005 ABC transporter D3H41_00220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_00225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3H41_00235 PF12911 N-terminal TM domain of oligopeptide transport permease C D3H41_00235 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_00270 PF00069 Protein kinase domain D3H41_00275 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D3H41_00275 PF00356 Bacterial regulatory proteins, lacI family D3H41_00280 PF03466 LysR substrate binding domain D3H41_00280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_00285 PF00893 Small Multidrug Resistance protein D3H41_00290 PF00893 Small Multidrug Resistance protein D3H41_00295 PF00920 Dehydratase family D3H41_00300 PF01202 Shikimate kinase D3H41_00305 PF02447 GntP family permease D3H41_00310 PF01081 KDPG and KHG aldolase D3H41_00315 PF01048 Phosphorylase superfamily D3H41_00320 PF03466 LysR substrate binding domain D3H41_00320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_00325 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_00325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3H41_00330 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D3H41_00335 PF01432 Peptidase family M3 D3H41_00340 PF01037 Lrp/AsnC ligand binding domain D3H41_00345 PF08448 PAS fold D3H41_00345 PF00563 EAL domain D3H41_00345 PF00990 Diguanylate cyclase, GGDEF domain D3H41_00350 PF04445 Putative SAM-dependent methyltransferase D3H41_00360 PF00892 EamA-like transporter family D3H41_00365 PF00582 Universal stress protein family D3H41_00370 PF00210 Ferritin-like domain D3H41_00375 PF10625 Universal stress protein B (UspB) D3H41_00385 PF01590 GAF domain D3H41_00385 PF02954 Bacterial regulatory protein, Fis family D3H41_00385 PF00158 Sigma-54 interaction domain D3H41_00410 PF00781 Diacylglycerol kinase catalytic domain D3H41_00440 PF01594 AI-2E family transporter D3H41_00445 PF03707 Bacterial signalling protein N terminal repeat D3H41_00445 PF00990 Diguanylate cyclase, GGDEF domain D3H41_00445 PF00563 EAL domain D3H41_00455 PF02646 RmuC family D3H41_00460 PF01209 ubiE/COQ5 methyltransferase family D3H41_00465 PF02036 SCP-2 sterol transfer family D3H41_00470 PF03109 ABC1 family D3H41_00475 PF02416 mttA/Hcf106 family D3H41_00480 PF02416 mttA/Hcf106 family D3H41_00485 PF00902 Sec-independent protein translocase protein (TatC) D3H41_00495 PF01026 TatD related DNase D3H41_00505 PF00490 Delta-aminolevulinic acid dehydratase D3H41_00510 PF00583 Acetyltransferase (GNAT) family D3H41_00520 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D3H41_00520 PF00476 DNA polymerase family A D3H41_00520 PF01612 3'-5' exonuclease D3H41_00520 PF01367 5'-3' exonuclease, C-terminal SAM fold D3H41_00525 PF01926 50S ribosome-binding GTPase D3H41_00530 PF00034 Cytochrome c D3H41_00545 PF04220 Der GTPase activator (YihI) D3H41_00550 PF10675 Protein of unknown function (DUF2489) D3H41_00555 PF04055 Radical SAM superfamily D3H41_00555 PF06969 HemN C-terminal domain D3H41_00560 PF00962 Adenosine/AMP deaminase D3H41_00565 PF00563 EAL domain D3H41_00565 PF00990 Diguanylate cyclase, GGDEF domain D3H41_00565 PF03707 Bacterial signalling protein N terminal repeat D3H41_00570 PF00158 Sigma-54 interaction domain D3H41_00570 PF00072 Response regulator receiver domain D3H41_00570 PF02954 Bacterial regulatory protein, Fis family D3H41_00575 PF00989 PAS fold D3H41_00575 PF00512 His Kinase A (phospho-acceptor) domain D3H41_00575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_00585 PF03951 Glutamine synthetase, beta-Grasp domain D3H41_00585 PF00120 Glutamine synthetase, catalytic domain D3H41_00595 PF00308 Bacterial dnaA protein D3H41_00595 PF08299 Bacterial dnaA protein helix-turn-helix D3H41_00605 PF03631 Virulence factor BrkB D3H41_00610 PF02580 D-Tyr-tRNA(Tyr) deacylase D3H41_00615 PF00583 Acetyltransferase (GNAT) family D3H41_00615 PF09500 Putative thioesterase (yiiD_Cterm) D3H41_00625 PF01293 Phosphoenolpyruvate carboxykinase D3H41_00630 PF01430 Hsp33 protein D3H41_00635 PF01479 S4 domain D3H41_00640 PF11356 Type II secretion system protein C D3H41_00645 PF00263 Bacterial type II and III secretion system protein D3H41_00645 PF03958 Bacterial type II/III secretion system short domain D3H41_00650 PF00437 Type II/IV secretion system protein D3H41_00655 PF00482 Type II secretion system (T2SS), protein F D3H41_00660 PF07963 Prokaryotic N-terminal methylation motif D3H41_00660 PF08334 Type II secretion system (T2SS), protein G D3H41_00665 PF12019 Type II transport protein GspH D3H41_00670 PF07963 Prokaryotic N-terminal methylation motif D3H41_00670 PF02501 Type II secretion system (T2SS), protein I D3H41_00675 PF11612 Type II secretion system (T2SS), protein J D3H41_00675 PF07963 Prokaryotic N-terminal methylation motif D3H41_00680 PF03934 Type II secretion system (T2SS), protein K D3H41_00685 PF05134 Type II secretion system (T2SS), protein L D3H41_00685 PF12693 GspL periplasmic domain D3H41_00690 PF04612 Type II secretion system (T2SS), protein M D3H41_00695 PF01203 Type II secretion system (T2SS), protein N D3H41_00700 PF00459 Inositol monophosphatase family D3H41_00705 PF00293 NUDIX domain D3H41_00710 PF01106 NifU-like domain D3H41_00710 PF01521 Iron-sulphur cluster biosynthesis D3H41_00715 PF00156 Phosphoribosyl transferase domain D3H41_00720 PF00561 alpha/beta hydrolase fold D3H41_00730 PF17674 HHH domain D3H41_00730 PF16921 Tex protein YqgF-like domain D3H41_00730 PF09371 Tex-like protein N-terminal domain D3H41_00730 PF00575 S1 RNA binding domain D3H41_00740 PF01272 Transcription elongation factor, GreA/GreB, C-term D3H41_00740 PF03449 Transcription elongation factor, N-terminal D3H41_00750 PF00072 Response regulator receiver domain D3H41_00750 PF00486 Transcriptional regulatory protein, C terminal D3H41_00755 PF00672 HAMP domain D3H41_00755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_00755 PF00512 His Kinase A (phospho-acceptor) domain D3H41_00760 PF00860 Permease family D3H41_00765 PF00271 Helicase conserved C-terminal domain D3H41_00765 PF17191 RecG wedge domain D3H41_00765 PF00270 DEAD/DEAH box helicase D3H41_00770 PF00588 SpoU rRNA Methylase family D3H41_00770 PF12105 SpoU, rRNA methylase, C-terminal D3H41_00775 PF02824 TGS domain D3H41_00775 PF04607 Region found in RelA / SpoT proteins D3H41_00775 PF13291 ACT domain D3H41_00780 PF01192 RNA polymerase Rpb6 D3H41_00785 PF00625 Guanylate kinase D3H41_00805 PF02472 Biopolymer transport protein ExbD/TolR D3H41_00810 PF01618 MotA/TolQ/ExbB proton channel family D3H41_00825 PF00593 TonB dependent receptor D3H41_00825 PF07715 TonB-dependent Receptor Plug Domain D3H41_00835 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_00840 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_00840 PF12911 N-terminal TM domain of oligopeptide transport permease C D3H41_00845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3H41_00850 PF00005 ABC transporter D3H41_00850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_00855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_00855 PF00005 ABC transporter D3H41_00865 PF00563 EAL domain D3H41_00865 PF00990 Diguanylate cyclase, GGDEF domain D3H41_00865 PF13426 PAS domain D3H41_00900 PF08340 Domain of unknown function (DUF1732) D3H41_00900 PF03755 YicC-like family, N-terminal region D3H41_00910 PF03725 3' exoribonuclease family, domain 2 D3H41_00910 PF01138 3' exoribonuclease family, domain 1 D3H41_00920 PF03279 Bacterial lipid A biosynthesis acyltransferase D3H41_00925 PF00440 Bacterial regulatory proteins, tetR family D3H41_00930 PF04127 DNA / pantothenate metabolism flavoprotein D3H41_00930 PF02441 Flavoprotein D3H41_00940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_00940 PF00672 HAMP domain D3H41_00940 PF17200 Single Cache domain 2 D3H41_00945 PF04002 RadC-like JAB domain D3H41_00950 PF00830 Ribosomal L28 family D3H41_00955 PF00471 Ribosomal protein L33 D3H41_00965 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D3H41_00965 PF06827 Zinc finger found in FPG and IleRS D3H41_00965 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D3H41_00970 PF01467 Cytidylyltransferase-like D3H41_00975 PF05686 Glycosyl transferase family 90 D3H41_00980 PF00535 Glycosyl transferase family 2 D3H41_00985 PF00535 Glycosyl transferase family 2 D3H41_00990 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D3H41_00995 PF01219 Prokaryotic diacylglycerol kinase D3H41_01005 PF16363 GDP-mannose 4,6 dehydratase D3H41_01010 PF00483 Nucleotidyl transferase D3H41_01015 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D3H41_01020 PF00550 Phosphopantetheine attachment site D3H41_01020 PF00501 AMP-binding enzyme D3H41_01020 PF00975 Thioesterase domain D3H41_01020 PF13193 AMP-binding enzyme C-terminal domain D3H41_01020 PF00668 Condensation domain D3H41_01030 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D3H41_01030 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D3H41_01045 PF02911 Formyl transferase, C-terminal domain D3H41_01045 PF00551 Formyl transferase D3H41_01055 PF00535 Glycosyl transferase family 2 D3H41_01060 PF00534 Glycosyl transferases group 1 D3H41_01060 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D3H41_01065 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D3H41_01075 PF03279 Bacterial lipid A biosynthesis acyltransferase D3H41_01080 PF01370 NAD dependent epimerase/dehydratase family D3H41_01085 PF06082 Exopolysaccharide biosynthesis protein YbjH D3H41_01120 PF02348 Cytidylyltransferase D3H41_01125 PF03102 NeuB family D3H41_01125 PF08666 SAF domain D3H41_01130 PF02350 UDP-N-acetylglucosamine 2-epimerase D3H41_01140 PF01943 Polysaccharide biosynthesis protein D3H41_01155 PF00535 Glycosyl transferase family 2 D3H41_01160 PF01370 NAD dependent epimerase/dehydratase family D3H41_01165 PF02397 Bacterial sugar transferase D3H41_01170 PF02719 Polysaccharide biosynthesis protein D3H41_01175 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D3H41_01175 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D3H41_01175 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D3H41_01180 PF00483 Nucleotidyl transferase D3H41_01185 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D3H41_01185 PF10996 Beta-Casp domain D3H41_01185 PF00753 Metallo-beta-lactamase superfamily D3H41_01190 PF00121 Triosephosphate isomerase D3H41_01215 PF00455 DeoR C terminal sensor domain D3H41_01215 PF08220 DeoR-like helix-turn-helix domain D3H41_01220 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded D3H41_01225 PF06005 Cell division protein ZapB D3H41_01230 PF03737 Aldolase/RraA D3H41_01235 PF01040 UbiA prenyltransferase family D3H41_01240 PF00004 ATPase family associated with various cellular activities (AAA) D3H41_01240 PF07724 AAA domain (Cdc48 subfamily) D3H41_01245 PF00227 Proteasome subunit D3H41_01255 PF00356 Bacterial regulatory proteins, lacI family D3H41_01260 PF00270 DEAD/DEAH box helicase D3H41_01260 PF00271 Helicase conserved C-terminal domain D3H41_01260 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D3H41_01260 PF17764 3′ DNA-binding domain (3′BD) D3H41_01260 PF18074 Primosomal protein N C-terminal domain D3H41_01270 PF01197 Ribosomal protein L31 D3H41_01275 PF00338 Ribosomal protein S10p/S20e D3H41_01280 PF00297 Ribosomal protein L3 D3H41_01285 PF00573 Ribosomal protein L4/L1 family D3H41_01290 PF00276 Ribosomal protein L23 D3H41_01295 PF00181 Ribosomal Proteins L2, RNA binding domain D3H41_01295 PF03947 Ribosomal Proteins L2, C-terminal domain D3H41_01300 PF00203 Ribosomal protein S19 D3H41_01305 PF00237 Ribosomal protein L22p/L17e D3H41_01310 PF07650 KH domain D3H41_01310 PF00189 Ribosomal protein S3, C-terminal domain D3H41_01315 PF00252 Ribosomal protein L16p/L10e D3H41_01320 PF00831 Ribosomal L29 protein D3H41_01325 PF00366 Ribosomal protein S17 D3H41_01330 PF00238 Ribosomal protein L14p/L23e D3H41_01335 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D3H41_01335 PF00467 KOW motif D3H41_01340 PF00281 Ribosomal protein L5 D3H41_01340 PF00673 ribosomal L5P family C-terminus D3H41_01345 PF00253 Ribosomal protein S14p/S29e D3H41_01350 PF00410 Ribosomal protein S8 D3H41_01355 PF00347 Ribosomal protein L6 D3H41_01360 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D3H41_01365 PF03719 Ribosomal protein S5, C-terminal domain D3H41_01365 PF00333 Ribosomal protein S5, N-terminal domain D3H41_01370 PF00327 Ribosomal protein L30p/L7e D3H41_01380 PF00344 SecY translocase D3H41_01385 PF00444 Ribosomal protein L36 D3H41_01390 PF00416 Ribosomal protein S13/S18 D3H41_01395 PF00411 Ribosomal protein S11 D3H41_01400 PF01479 S4 domain D3H41_01400 PF00163 Ribosomal protein S4/S9 N-terminal domain D3H41_01405 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D3H41_01405 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D3H41_01405 PF01000 RNA polymerase Rpb3/RpoA insert domain D3H41_01410 PF01196 Ribosomal protein L17 D3H41_01420 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D3H41_01420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D3H41_01430 PF13673 Acetyltransferase (GNAT) domain D3H41_01435 PF00271 Helicase conserved C-terminal domain D3H41_01435 PF00270 DEAD/DEAH box helicase D3H41_01435 PF03880 DbpA RNA binding domain D3H41_01445 PF02872 5'-nucleotidase, C-terminal domain D3H41_01445 PF00149 Calcineurin-like phosphoesterase D3H41_01450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3H41_01450 PF14824 Sirohaem biosynthesis protein central D3H41_01450 PF10414 Sirohaem synthase dimerisation region D3H41_01455 PF01507 Phosphoadenosine phosphosulfate reductase family D3H41_01460 PF00009 Elongation factor Tu GTP binding domain D3H41_01465 PF02080 TrkA-C domain D3H41_01465 PF03600 Citrate transporter D3H41_01490 PF00005 ABC transporter D3H41_01500 PF10795 Protein of unknown function (DUF2607) D3H41_01505 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) D3H41_01510 PF06526 Protein of unknown function (DUF1107) D3H41_01515 PF01625 Peptide methionine sulfoxide reductase D3H41_01520 PF01103 Surface antigen D3H41_01520 PF07244 Surface antigen variable number repeat D3H41_01520 PF17243 POTRA domain TamA domain 1 D3H41_01525 PF04357 TamB, inner membrane protein subunit of TAM complex D3H41_01530 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like D3H41_01540 PF00719 Inorganic pyrophosphatase D3H41_01545 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain D3H41_01555 PF01225 Mur ligase family, catalytic domain D3H41_01555 PF08245 Mur ligase middle domain D3H41_01555 PF02875 Mur ligase family, glutamate ligase domain D3H41_01560 PF02441 Flavoprotein D3H41_01570 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_01575 PF00005 ABC transporter D3H41_01580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_01580 PF03466 LysR substrate binding domain D3H41_01585 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D3H41_01605 PF16868 NMT1-like family D3H41_01615 PF02863 Arginine repressor, C-terminal domain D3H41_01615 PF01316 Arginine repressor, DNA binding domain D3H41_01620 PF00056 lactate/malate dehydrogenase, NAD binding domain D3H41_01620 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D3H41_01630 PF00348 Polyprenyl synthetase D3H41_01635 PF00829 Ribosomal prokaryotic L21 protein D3H41_01640 PF01016 Ribosomal L27 protein D3H41_01645 PF01926 50S ribosome-binding GTPase D3H41_01645 PF01018 GTP1/OBG D3H41_01650 PF06738 Putative threonine/serine exporter D3H41_01655 PF12821 Threonine/Serine exporter, ThrE D3H41_01660 PF00186 Dihydrofolate reductase D3H41_01665 PF00149 Calcineurin-like phosphoesterase D3H41_01670 PF04379 ApaG domain D3H41_01675 PF00398 Ribosomal RNA adenine dimethylase D3H41_01680 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D3H41_01685 PF09312 SurA N-terminal domain D3H41_01690 PF04453 LPS transport system D D3H41_01690 PF03968 OstA-like protein D3H41_01695 PF05099 Tellurite resistance protein TerB D3H41_01695 PF00226 DnaJ domain D3H41_01705 PF00694 Aconitase C-terminal domain D3H41_01710 PF00330 Aconitase family (aconitate hydratase) D3H41_01715 PF00180 Isocitrate/isopropylmalate dehydrogenase D3H41_01720 PF08502 LeuA allosteric (dimerisation) domain D3H41_01720 PF00682 HMGL-like D3H41_01735 PF01569 PAP2 superfamily D3H41_01745 PF03466 LysR substrate binding domain D3H41_01745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_01750 PF00501 AMP-binding enzyme D3H41_01755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3H41_01755 PF00205 Thiamine pyrophosphate enzyme, central domain D3H41_01755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3H41_01760 PF10369 Small subunit of acetolactate synthase D3H41_01765 PF07694 5TMR of 5TMR-LYT D3H41_01765 PF00990 Diguanylate cyclase, GGDEF domain D3H41_01775 PF02887 Pyruvate kinase, alpha/beta domain D3H41_01775 PF00224 Pyruvate kinase, barrel domain D3H41_01780 PF08220 DeoR-like helix-turn-helix domain D3H41_01780 PF00455 DeoR C terminal sensor domain D3H41_01785 PF01380 SIS domain D3H41_01790 PF00465 Iron-containing alcohol dehydrogenase D3H41_01795 PF02733 Dak1 domain D3H41_01800 PF02734 DAK2 domain D3H41_01805 PF00391 PEP-utilising enzyme, mobile domain D3H41_01805 PF05524 PEP-utilising enzyme, N-terminal D3H41_01805 PF02896 PEP-utilising enzyme, TIM barrel domain D3H41_01810 PF00158 Sigma-54 interaction domain D3H41_01810 PF00989 PAS fold D3H41_01810 PF02954 Bacterial regulatory protein, Fis family D3H41_01815 PF05068 Mannitol repressor D3H41_01820 PF01232 Mannitol dehydrogenase Rossmann domain D3H41_01820 PF08125 Mannitol dehydrogenase C-terminal domain D3H41_01825 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D3H41_01825 PF02378 Phosphotransferase system, EIIC D3H41_01825 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D3H41_01850 PF03180 NLPA lipoprotein D3H41_01860 PF04545 Sigma-70, region 4 D3H41_01860 PF04539 Sigma-70 region 3 D3H41_01860 PF04542 Sigma-70 region 2 D3H41_01860 PF03979 Sigma-70 factor, region 1.1 D3H41_01860 PF04546 Sigma-70, non-essential region D3H41_01860 PF00140 Sigma-70 factor, region 1.2 D3H41_01865 PF01807 CHC2 zinc finger D3H41_01865 PF08275 DNA primase catalytic core, N-terminal domain D3H41_01865 PF10410 DnaB-helicase binding domain of primase D3H41_01865 PF08278 DNA primase DnaG DnaB-binding D3H41_01870 PF09424 Yqey-like protein D3H41_01875 PF01165 Ribosomal protein S21 D3H41_01880 PF00814 Glycoprotease family D3H41_01885 PF00561 alpha/beta hydrolase fold D3H41_01890 PF02660 Glycerol-3-phosphate acyltransferase D3H41_01895 PF02152 Dihydroneopterin aldolase D3H41_01900 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D3H41_01905 PF02673 Bacitracin resistance protein BacA D3H41_01910 PF12627 Probable RNA and SrmB- binding site of polymerase A D3H41_01910 PF01743 Poly A polymerase head domain D3H41_01910 PF01966 HD domain D3H41_01915 PF13401 AAA domain D3H41_01915 PF01471 Putative peptidoglycan binding domain D3H41_01930 PF08239 Bacterial SH3 domain D3H41_01935 PF01384 Phosphate transporter family D3H41_01940 PF01865 Protein of unknown function DUF47 D3H41_01945 PF01928 CYTH domain D3H41_01955 PF02743 Cache domain D3H41_01955 PF00672 HAMP domain D3H41_01955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_01960 PF03710 Glutamate-ammonia ligase adenylyltransferase D3H41_01960 PF08335 GlnD PII-uridylyltransferase D3H41_01965 PF01467 Cytidylyltransferase-like D3H41_01965 PF00294 pfkB family carbohydrate kinase D3H41_01970 PF02321 Outer membrane efflux protein D3H41_01975 PF00293 NUDIX domain D3H41_01980 PF06853 Protein of unknown function (DUF1249) D3H41_01985 PF00149 Calcineurin-like phosphoesterase D3H41_01990 PF05728 Uncharacterised protein family (UPF0227) D3H41_01995 PF00986 DNA gyrase B subunit, carboxyl terminus D3H41_01995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_01995 PF01751 Toprim domain D3H41_01995 PF00204 DNA gyrase B D3H41_02000 PF03989 DNA gyrase C-terminal domain, beta-propeller D3H41_02000 PF00521 DNA gyrase/topoisomerase IV, subunit A D3H41_02005 PF13180 PDZ domain D3H41_02010 PF00595 PDZ domain D3H41_02015 PF06295 Protein of unknown function (DUF1043) D3H41_02025 PF03969 AFG1-like ATPase D3H41_02035 PF00572 Ribosomal protein L13 D3H41_02040 PF00380 Ribosomal protein S9/S16 D3H41_02045 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal D3H41_02045 PF00355 Rieske [2Fe-2S] domain D3H41_02050 PF00033 Cytochrome b/b6/petB D3H41_02050 PF00032 Cytochrome b(C-terminal)/b6/petD D3H41_02055 PF02167 Cytochrome C1 family D3H41_02060 PF02798 Glutathione S-transferase, N-terminal domain D3H41_02060 PF00043 Glutathione S-transferase, C-terminal domain D3H41_02065 PF04386 Stringent starvation protein B D3H41_02070 PF04972 BON domain D3H41_02075 PF13580 SIS domain D3H41_02080 PF02021 Uncharacterised protein family UPF0102 D3H41_02085 PF04348 LppC putative lipoprotein D3H41_02090 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3H41_02105 PF01795 MraW methylase family D3H41_02110 PF04999 Cell division protein FtsL D3H41_02115 PF00905 Penicillin binding protein transpeptidase domain D3H41_02115 PF03717 Penicillin-binding Protein dimerisation domain D3H41_02120 PF08245 Mur ligase middle domain D3H41_02120 PF01225 Mur ligase family, catalytic domain D3H41_02120 PF02875 Mur ligase family, glutamate ligase domain D3H41_02125 PF01225 Mur ligase family, catalytic domain D3H41_02125 PF08245 Mur ligase middle domain D3H41_02125 PF02875 Mur ligase family, glutamate ligase domain D3H41_02130 PF00953 Glycosyl transferase family 4 D3H41_02130 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D3H41_02135 PF08245 Mur ligase middle domain D3H41_02135 PF02875 Mur ligase family, glutamate ligase domain D3H41_02140 PF01098 Cell cycle protein D3H41_02145 PF03033 Glycosyltransferase family 28 N-terminal domain D3H41_02145 PF04101 Glycosyltransferase family 28 C-terminal domain D3H41_02150 PF02875 Mur ligase family, glutamate ligase domain D3H41_02150 PF01225 Mur ligase family, catalytic domain D3H41_02150 PF08245 Mur ligase middle domain D3H41_02155 PF08478 POTRA domain, FtsQ-type D3H41_02155 PF03799 Cell division protein FtsQ D3H41_02160 PF02491 SHS2 domain inserted in FTSA D3H41_02165 PF00091 Tubulin/FtsZ family, GTPase domain D3H41_02165 PF12327 FtsZ family, C-terminal domain D3H41_02170 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D3H41_02180 PF01043 SecA preprotein cross-linking domain D3H41_02180 PF02810 SEC-C motif D3H41_02180 PF07516 SecA Wing and Scaffold domain D3H41_02180 PF07517 SecA DEAD-like domain D3H41_02185 PF00293 NUDIX domain D3H41_02190 PF05173 Dihydrodipicolinate reductase, C-terminus D3H41_02190 PF01113 Dihydrodipicolinate reductase, N-terminus D3H41_02195 PF00117 Glutamine amidotransferase class-I D3H41_02195 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D3H41_02200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3H41_02200 PF02142 MGS-like domain D3H41_02200 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D3H41_02215 PF01925 Sulfite exporter TauE/SafE D3H41_02220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_02220 PF03466 LysR substrate binding domain D3H41_02225 PF03458 UPF0126 domain D3H41_02230 PF01497 Periplasmic binding protein D3H41_02235 PF17113 Regulatory signalling modulator protein AmpE D3H41_02235 PF03186 CobD/Cbib protein D3H41_02240 PF01048 Phosphorylase superfamily D3H41_02250 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_02250 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D3H41_02255 PF04898 Glutamate synthase central domain D3H41_02255 PF01645 Conserved region in glutamate synthase D3H41_02255 PF00310 Glutamine amidotransferases class-II D3H41_02255 PF01493 GXGXG motif D3H41_02260 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D3H41_02260 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_02265 PF00310 Glutamine amidotransferases class-II D3H41_02265 PF01493 GXGXG motif D3H41_02265 PF01645 Conserved region in glutamate synthase D3H41_02265 PF04898 Glutamate synthase central domain D3H41_02270 PF04055 Radical SAM superfamily D3H41_02270 PF16199 Radical_SAM C-terminal domain D3H41_02275 PF01590 GAF domain D3H41_02275 PF00563 EAL domain D3H41_02275 PF00990 Diguanylate cyclase, GGDEF domain D3H41_02275 PF00360 Phytochrome region D3H41_02280 PF00072 Response regulator receiver domain D3H41_02280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_02280 PF00989 PAS fold D3H41_02280 PF01627 Hpt domain D3H41_02280 PF18415 Histidine kinase receptor ArcB trans-membrane domain D3H41_02280 PF00512 His Kinase A (phospho-acceptor) domain D3H41_02290 PF00072 Response regulator receiver domain D3H41_02290 PF00486 Transcriptional regulatory protein, C terminal D3H41_02305 PF03737 Aldolase/RraA D3H41_02320 PF00696 Amino acid kinase family D3H41_02320 PF00742 Homoserine dehydrogenase D3H41_02320 PF03447 Homoserine dehydrogenase, NAD binding domain D3H41_02320 PF01842 ACT domain D3H41_02320 PF13840 ACT domain D3H41_02325 PF08544 GHMP kinases C terminal D3H41_02325 PF00288 GHMP kinases N terminal domain D3H41_02330 PF14821 Threonine synthase N terminus D3H41_02330 PF00291 Pyridoxal-phosphate dependent enzyme D3H41_02340 PF01228 Glycine radical D3H41_02345 PF01261 Xylose isomerase-like TIM barrel D3H41_02355 PF03167 Uracil DNA glycosylase superfamily D3H41_02370 PF01235 Sodium:alanine symporter family D3H41_02375 PF03883 Peroxide stress protein YaaA D3H41_02380 PF00271 Helicase conserved C-terminal domain D3H41_02380 PF00270 DEAD/DEAH box helicase D3H41_02385 PF05175 Methyltransferase small domain D3H41_02390 PF05525 Branched-chain amino acid transport protein D3H41_02395 PF00258 Flavodoxin D3H41_02400 PF02899 Phage integrase, N-terminal SAM-like domain D3H41_02400 PF00589 Phage integrase family D3H41_02405 PF13098 Thioredoxin-like domain D3H41_02405 PF10411 Disulfide bond isomerase protein N-terminus D3H41_02410 PF02272 DHHA1 domain D3H41_02410 PF17768 RecJ OB domain D3H41_02410 PF01368 DHH family D3H41_02420 PF00152 tRNA synthetases class II (D, K and N) D3H41_02420 PF01336 OB-fold nucleic acid binding domain D3H41_02425 PF00158 Sigma-54 interaction domain D3H41_02425 PF00072 Response regulator receiver domain D3H41_02425 PF02954 Bacterial regulatory protein, Fis family D3H41_02435 PF00248 Aldo/keto reductase family D3H41_02445 PF02976 DNA mismatch repair enzyme MutH D3H41_02450 PF00293 NUDIX domain D3H41_02455 PF00391 PEP-utilising enzyme, mobile domain D3H41_02455 PF02896 PEP-utilising enzyme, TIM barrel domain D3H41_02455 PF05524 PEP-utilising enzyme, N-terminal D3H41_02455 PF01590 GAF domain D3H41_02460 PF01925 Sulfite exporter TauE/SafE D3H41_02470 PF00303 Thymidylate synthase D3H41_02480 PF02690 Na+/Pi-cotransporter D3H41_02485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_02485 PF03466 LysR substrate binding domain D3H41_02490 PF01022 Bacterial regulatory protein, arsR family D3H41_02495 PF01649 Ribosomal protein S20 D3H41_02500 PF03023 Lipid II flippase MurJ D3H41_02505 PF06574 FAD synthetase D3H41_02505 PF01687 Riboflavin kinase D3H41_02510 PF08264 Anticodon-binding domain of tRNA D3H41_02510 PF06827 Zinc finger found in FPG and IleRS D3H41_02510 PF00133 tRNA synthetases class I (I, L, M and V) D3H41_02515 PF01252 Signal peptidase (SPase) II D3H41_02520 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D3H41_02525 PF02401 LytB protein D3H41_02535 PF04397 LytTr DNA-binding domain D3H41_02535 PF00072 Response regulator receiver domain D3H41_02540 PF06580 Histidine kinase D3H41_02540 PF07694 5TMR of 5TMR-LYT D3H41_02545 PF02554 Carbon starvation protein CstA D3H41_02560 PF01380 SIS domain D3H41_02565 PF03702 Anhydro-N-acetylmuramic acid kinase D3H41_02570 PF00933 Glycosyl hydrolase family 3 N terminal domain D3H41_02575 PF00793 DAHP synthetase I family D3H41_02580 PF01817 Chorismate mutase type II D3H41_02580 PF02153 Prephenate dehydrogenase D3H41_02585 PF01551 Peptidase family M23 D3H41_02585 PF04225 Opacity-associated protein A LysM-like domain D3H41_02590 PF07238 PilZ domain D3H41_02595 PF12848 ABC transporter D3H41_02595 PF00005 ABC transporter D3H41_02600 PF01464 Transglycosylase SLT domain D3H41_02600 PF14718 Soluble lytic murein transglycosylase L domain D3H41_02605 PF01371 Trp repressor protein D3H41_02610 PF01931 Protein of unknown function DUF84 D3H41_02615 PF01817 Chorismate mutase type II D3H41_02615 PF00800 Prephenate dehydratase D3H41_02620 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D3H41_02625 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3H41_02625 PF01464 Transglycosylase SLT domain D3H41_02630 PF13525 Outer membrane lipoprotein D3H41_02635 PF00849 RNA pseudouridylate synthase D3H41_02635 PF01479 S4 domain D3H41_02645 PF07724 AAA domain (Cdc48 subfamily) D3H41_02645 PF02861 Clp amino terminal domain, pathogenicity island component D3H41_02645 PF00004 ATPase family associated with various cellular activities (AAA) D3H41_02645 PF10431 C-terminal, D2-small domain, of ClpB protein D3H41_02645 PF17871 AAA lid domain D3H41_02695 PF03411 Penicillin-insensitive murein endopeptidase D3H41_02710 PF00037 4Fe-4S binding domain D3H41_02720 PF04381 Putative exonuclease, RdgC D3H41_02730 PF00072 Response regulator receiver domain D3H41_02730 PF00486 Transcriptional regulatory protein, C terminal D3H41_02735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_02735 PF11808 Phosphate regulon sensor protein PhoR D3H41_02735 PF00512 His Kinase A (phospho-acceptor) domain D3H41_02735 PF00989 PAS fold D3H41_02740 PF12849 PBP superfamily domain D3H41_02750 PF02541 Ppx/GppA phosphatase family D3H41_02755 PF17941 Polyphosphate kinase C-terminal domain 1 D3H41_02755 PF13089 Polyphosphate kinase N-terminal domain D3H41_02755 PF02503 Polyphosphate kinase middle domain D3H41_02755 PF13090 Polyphosphate kinase C-terminal domain 2 D3H41_02760 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_02765 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_02770 PF00005 ABC transporter D3H41_02775 PF01895 PhoU domain D3H41_02780 PF03976 Polyphosphate kinase 2 (PPK2) D3H41_02785 PF03932 CutC family D3H41_02790 PF00578 AhpC/TSA family D3H41_02790 PF10417 C-terminal domain of 1-Cys peroxiredoxin D3H41_02795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_02795 PF03466 LysR substrate binding domain D3H41_02800 PF01274 Malate synthase D3H41_02805 PF00463 Isocitrate lyase family D3H41_02810 PF00571 CBS domain D3H41_02820 PF02547 Queuosine biosynthesis protein D3H41_02825 PF01702 Queuine tRNA-ribosyltransferase D3H41_02830 PF02699 Preprotein translocase subunit D3H41_02835 PF02355 Protein export membrane protein D3H41_02835 PF07549 SecD/SecF GG Motif D3H41_02835 PF13721 SecD export protein N-terminal TM region D3H41_02840 PF02355 Protein export membrane protein D3H41_02840 PF07549 SecD/SecF GG Motif D3H41_02855 PF00459 Inositol monophosphatase family D3H41_02860 PF00588 SpoU rRNA Methylase family D3H41_02865 PF02082 Transcriptional regulator D3H41_02870 PF00266 Aminotransferase class-V D3H41_02875 PF01592 NifU-like N terminal domain D3H41_02880 PF01521 Iron-sulphur cluster biosynthesis D3H41_02885 PF07743 HSCB C-terminal oligomerisation domain D3H41_02885 PF00226 DnaJ domain D3H41_02890 PF00012 Hsp70 protein D3H41_02895 PF00111 2Fe-2S iron-sulfur cluster binding domain D3H41_02900 PF04384 Iron-sulphur cluster assembly D3H41_02905 PF12404 Peptidase D3H41_02905 PF00883 Cytosol aminopeptidase family, catalytic domain D3H41_02910 PF00334 Nucleoside diphosphate kinase D3H41_02915 PF04055 Radical SAM superfamily D3H41_02920 PF13464 Domain of unknown function (DUF4115) D3H41_02925 PF04551 GcpE protein D3H41_02930 PF13393 Histidyl-tRNA synthetase D3H41_02930 PF03129 Anticodon binding domain D3H41_02935 PF09976 Tetratricopeptide repeat-like domain D3H41_02940 PF13360 PQQ-like domain D3H41_02945 PF01926 50S ribosome-binding GTPase D3H41_02945 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D3H41_02960 PF02601 Exonuclease VII, large subunit D3H41_02960 PF13742 OB-fold nucleic acid binding domain D3H41_02965 PF00478 IMP dehydrogenase / GMP reductase domain D3H41_02965 PF00571 CBS domain D3H41_02970 PF02540 NAD synthase D3H41_02970 PF00958 GMP synthase C terminal domain D3H41_02970 PF00117 Glutamine amidotransferase class-I D3H41_02975 PF00589 Phage integrase family D3H41_02975 PF13356 Arm DNA-binding domain D3H41_03015 PF18821 Large polyvalent protein-associated domain 7 D3H41_03015 PF03432 Relaxase/Mobilisation nuclease domain D3H41_03080 PF07690 Major Facilitator Superfamily D3H41_03085 PF02909 Tetracyclin repressor-like, C-terminal domain D3H41_03085 PF00440 Bacterial regulatory proteins, tetR family D3H41_03100 PF00186 Dihydrofolate reductase D3H41_03120 PF07690 Major Facilitator Superfamily D3H41_03135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3H41_03135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3H41_03135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3H41_03135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3H41_03140 PF00809 Pterin binding enzyme D3H41_03150 PF03553 Na+/H+ antiporter family D3H41_03155 PF00704 Glycosyl hydrolases family 18 D3H41_03155 PF06483 Chitinase C D3H41_03160 PF01184 GPR1/FUN34/yaaH family D3H41_03165 PF01235 Sodium:alanine symporter family D3H41_03170 PF01266 FAD dependent oxidoreductase D3H41_03180 PF01053 Cys/Met metabolism PLP-dependent enzyme D3H41_03185 PF00202 Aminotransferase class-III D3H41_03205 PF00795 Carbon-nitrogen hydrolase D3H41_03205 PF00583 Acetyltransferase (GNAT) family D3H41_03210 PF03466 LysR substrate binding domain D3H41_03210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_03235 PF01668 SmpB protein D3H41_03240 PF03364 Polyketide cyclase / dehydrase and lipid transport D3H41_03245 PF03658 RnfH family Ubiquitin D3H41_03250 PF04355 SmpA / OmlA family D3H41_03260 PF02463 RecF/RecN/SMC N terminal domain D3H41_03270 PF01513 ATP-NAD kinase D3H41_03275 PF01025 GrpE D3H41_03280 PF00375 Sodium:dicarboxylate symporter family D3H41_03285 PF00012 Hsp70 protein D3H41_03290 PF00684 DnaJ central domain D3H41_03290 PF01556 DnaJ C terminal domain D3H41_03290 PF00226 DnaJ domain D3H41_03320 PF03806 AbgT putative transporter family D3H41_03325 PF14437 MafB19-like deaminase D3H41_03335 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3H41_03335 PF01464 Transglycosylase SLT domain D3H41_03340 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D3H41_03340 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal D3H41_03340 PF02769 AIR synthase related protein, C-terminal domain D3H41_03355 PF00593 TonB dependent receptor D3H41_03355 PF07715 TonB-dependent Receptor Plug Domain D3H41_03370 PF07687 Peptidase dimerisation domain D3H41_03370 PF01546 Peptidase family M20/M25/M40 D3H41_03375 PF00860 Permease family D3H41_03380 PF00156 Phosphoribosyl transferase domain D3H41_03390 PF07417 Sigma factor-binding transcriptional regulator Crl D3H41_03395 PF01472 PUA domain D3H41_03395 PF00696 Amino acid kinase family D3H41_03400 PF00171 Aldehyde dehydrogenase family D3H41_03405 PF03477 ATP cone domain D3H41_03410 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D3H41_03410 PF01872 RibD C-terminal domain D3H41_03415 PF00677 Lumazine binding domain D3H41_03420 PF00925 GTP cyclohydrolase II D3H41_03420 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D3H41_03425 PF00885 6,7-dimethyl-8-ribityllumazine synthase D3H41_03430 PF01029 NusB family D3H41_03435 PF02769 AIR synthase related protein, C-terminal domain D3H41_03435 PF00586 AIR synthase related protein, N-terminal domain D3H41_03440 PF04608 Phosphatidylglycerophosphatase A D3H41_03445 PF02780 Transketolase, C-terminal domain D3H41_03445 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D3H41_03445 PF02779 Transketolase, pyrimidine binding domain D3H41_03450 PF00348 Polyprenyl synthetase D3H41_03455 PF02609 Exonuclease VII small subunit D3H41_03460 PF01618 MotA/TolQ/ExbB proton channel family D3H41_03465 PF13677 Membrane MotB of proton-channel complex MotA/MotB D3H41_03465 PF00691 OmpA family D3H41_03470 PF02926 THUMP domain D3H41_03470 PF02568 Thiamine biosynthesis protein (ThiI) D3H41_03475 PF03466 LysR substrate binding domain D3H41_03475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_03485 PF04241 Protein of unknown function (DUF423) D3H41_03490 PF01728 FtsJ-like methyltransferase D3H41_03490 PF18125 RlmM ferredoxin-like domain D3H41_03495 PF01367 5'-3' exonuclease, C-terminal SAM fold D3H41_03495 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D3H41_03500 PF11892 Domain of unknown function (DUF3412) D3H41_03500 PF03641 Possible lysine decarboxylase D3H41_03500 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases D3H41_03505 PF00072 Response regulator receiver domain D3H41_03505 PF00990 Diguanylate cyclase, GGDEF domain D3H41_03515 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term D3H41_03515 PF14489 QueF-like protein D3H41_03520 PF07348 Syd protein (SUKH-2) D3H41_03525 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) D3H41_03530 PF03180 NLPA lipoprotein D3H41_03535 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_03540 PF00005 ABC transporter D3H41_03540 PF09383 NIL domain D3H41_03550 PF00356 Bacterial regulatory proteins, lacI family D3H41_03555 PF02378 Phosphotransferase system, EIIC D3H41_03555 PF00367 phosphotransferase system, EIIB D3H41_03560 PF00128 Alpha amylase, catalytic domain D3H41_03560 PF16657 Maltogenic Amylase, C-terminal domain D3H41_03575 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) D3H41_03575 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 D3H41_03580 PF00464 Serine hydroxymethyltransferase D3H41_03585 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family D3H41_03585 PF04055 Radical SAM superfamily D3H41_03590 PF03099 Biotin/lipoate A/B protein ligase family D3H41_03595 PF04359 Protein of unknown function (DUF493) D3H41_03600 PF00768 D-alanyl-D-alanine carboxypeptidase D3H41_03600 PF07943 Penicillin-binding protein 5, C-terminal domain D3H41_03605 PF03330 Lytic transglycolase D3H41_03605 PF05036 Sporulation related domain D3H41_03610 PF01098 Cell cycle protein D3H41_03615 PF00905 Penicillin binding protein transpeptidase domain D3H41_03615 PF03717 Penicillin-binding Protein dimerisation domain D3H41_03620 PF02590 Predicted SPOUT methyltransferase D3H41_03630 PF14840 Processivity clamp loader gamma complex DNA pol III C-term D3H41_03630 PF06144 DNA polymerase III, delta subunit D3H41_03635 PF04390 Lipopolysaccharide-assembly D3H41_03640 PF13603 Leucyl-tRNA synthetase, Domain 2 D3H41_03640 PF00133 tRNA synthetases class I (I, L, M and V) D3H41_03640 PF08264 Anticodon-binding domain of tRNA D3H41_03645 PF07295 Zinc-ribbon containing domain D3H41_03650 PF00795 Carbon-nitrogen hydrolase D3H41_03655 PF00571 CBS domain D3H41_03655 PF03471 Transporter associated domain D3H41_03660 PF02130 Uncharacterized protein family UPF0054 D3H41_03665 PF02562 PhoH-like protein D3H41_03670 PF00919 Uncharacterized protein family UPF0004 D3H41_03670 PF01938 TRAM domain D3H41_03670 PF04055 Radical SAM superfamily D3H41_03680 PF01494 FAD binding domain D3H41_03790 PF01926 50S ribosome-binding GTPase D3H41_03790 PF06071 Protein of unknown function (DUF933) D3H41_03795 PF01195 Peptidyl-tRNA hydrolase D3H41_03800 PF14572 Phosphoribosyl synthetase-associated domain D3H41_03800 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D3H41_03805 PF00288 GHMP kinases N terminal domain D3H41_03805 PF08544 GHMP kinases C terminal D3H41_03810 PF03550 Outer membrane lipoprotein LolB D3H41_03815 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D3H41_03815 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D3H41_03815 PF01488 Shikimate / quinate 5-dehydrogenase D3H41_03820 PF03462 PCRF domain D3H41_03820 PF00472 RF-1 domain D3H41_03825 PF17827 PrmC N-terminal domain D3H41_03825 PF13847 Methyltransferase domain D3H41_03830 PF04247 Invasion gene expression up-regulator, SirB D3H41_03835 PF13369 Transglutaminase-like superfamily D3H41_03840 PF00793 DAHP synthetase I family D3H41_03845 PF00149 Calcineurin-like phosphoesterase D3H41_03845 PF02872 5'-nucleotidase, C-terminal domain D3H41_03850 PF04073 Aminoacyl-tRNA editing domain D3H41_03855 PF00849 RNA pseudouridylate synthase D3H41_03855 PF01479 S4 domain D3H41_03860 PF01713 Smr domain D3H41_03885 PF03173 Putative carbohydrate binding domain D3H41_03885 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain D3H41_03885 PF00728 Glycosyl hydrolase family 20, catalytic domain D3H41_03885 PF02838 Glycosyl hydrolase family 20, domain 2 D3H41_03900 PF00403 Heavy-metal-associated domain D3H41_03910 PF13609 Gram-negative porin D3H41_03915 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) D3H41_03920 PF00749 tRNA synthetases class I (E and Q), catalytic domain D3H41_03925 PF01389 OmpA-like transmembrane domain D3H41_03925 PF00691 OmpA family D3H41_03970 PF00072 Response regulator receiver domain D3H41_03970 PF01584 CheW-like domain D3H41_03975 PF01739 CheR methyltransferase, SAM binding domain D3H41_03975 PF03705 CheR methyltransferase, all-alpha domain D3H41_03980 PF00460 Flagella basal body rod protein D3H41_03985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3H41_03985 PF00460 Flagella basal body rod protein D3H41_03990 PF13861 FlgD Tudor-like domain D3H41_03990 PF03963 Flagellar hook capping protein - N-terminal region D3H41_03990 PF13860 FlgD Ig-like domain D3H41_03995 PF00460 Flagella basal body rod protein D3H41_03995 PF07559 Flagellar basal body protein FlaE D3H41_03995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3H41_04000 PF00460 Flagella basal body rod protein D3H41_04000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3H41_04005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3H41_04005 PF00460 Flagella basal body rod protein D3H41_04010 PF02107 Flagellar L-ring protein D3H41_04015 PF02119 Flagellar P-ring protein D3H41_04020 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D3H41_04020 PF10135 Rod binding protein D3H41_04025 PF07196 Flagellin hook IN motif D3H41_04025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3H41_04030 PF00669 Bacterial flagellin N-terminal helical region D3H41_04035 PF00669 Bacterial flagellin N-terminal helical region D3H41_04035 PF07196 Flagellin hook IN motif D3H41_04035 PF00700 Bacterial flagellin C-terminal helical region D3H41_04045 PF00669 Bacterial flagellin N-terminal helical region D3H41_04045 PF00700 Bacterial flagellin C-terminal helical region D3H41_04045 PF07196 Flagellin hook IN motif D3H41_04050 PF00700 Bacterial flagellin C-terminal helical region D3H41_04050 PF07196 Flagellin hook IN motif D3H41_04050 PF00669 Bacterial flagellin N-terminal helical region D3H41_04060 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D3H41_04065 PF05524 PEP-utilising enzyme, N-terminal D3H41_04065 PF02896 PEP-utilising enzyme, TIM barrel domain D3H41_04065 PF00391 PEP-utilising enzyme, mobile domain D3H41_04070 PF00381 PTS HPr component phosphorylation site D3H41_04080 PF00291 Pyridoxal-phosphate dependent enzyme D3H41_04090 PF04354 ZipA, C-terminal FtsZ-binding domain D3H41_04095 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D3H41_04095 PF03120 NAD-dependent DNA ligase OB-fold domain D3H41_04095 PF12826 Helix-hairpin-helix motif D3H41_04095 PF00533 BRCA1 C Terminus (BRCT) domain D3H41_04095 PF01653 NAD-dependent DNA ligase adenylation domain D3H41_04100 PF03573 outer membrane porin, OprD family D3H41_04120 PF16200 C-terminal region of band_7 D3H41_04120 PF01145 SPFH domain / Band 7 family D3H41_04125 PF00085 Thioredoxin D3H41_04135 PF00106 short chain dehydrogenase D3H41_04140 PF01370 NAD dependent epimerase/dehydratase family D3H41_04140 PF08338 Domain of unknown function (DUF1731) D3H41_04145 PF07556 Protein of unknown function (DUF1538) D3H41_04150 PF07556 Protein of unknown function (DUF1538) D3H41_04170 PF12850 Calcineurin-like phosphoesterase superfamily domain D3H41_04185 PF17323 Trans-membrane regulatory protein ToxS D3H41_04190 PF00486 Transcriptional regulatory protein, C terminal D3H41_04195 PF00183 Hsp90 protein D3H41_04195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_04200 PF05191 Adenylate kinase, active site lid D3H41_04205 PF00762 Ferrochelatase D3H41_04210 PF00854 POT family D3H41_04215 PF02357 Transcription termination factor nusG D3H41_04220 PF13537 Glutamine amidotransferase domain D3H41_04220 PF00733 Asparagine synthase D3H41_04225 PF02254 TrkA-N domain D3H41_04225 PF00999 Sodium/hydrogen exchanger family D3H41_04230 PF00480 ROK family D3H41_04230 PF01047 MarR family D3H41_04235 PF01979 Amidohydrolase family D3H41_04245 PF00367 phosphotransferase system, EIIB D3H41_04245 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D3H41_04245 PF02378 Phosphotransferase system, EIIC D3H41_04250 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D3H41_04250 PF00749 tRNA synthetases class I (E and Q), catalytic domain D3H41_04255 PF01475 Ferric uptake regulator family D3H41_04265 PF00258 Flavodoxin D3H41_04275 PF12697 Alpha/beta hydrolase family D3H41_04280 PF03925 SeqA protein C-terminal domain D3H41_04280 PF17206 SeqA protein N-terminal domain D3H41_04285 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3H41_04285 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3H41_04285 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3H41_04285 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3H41_04295 PF01784 NIF3 (NGG1p interacting factor 3) D3H41_04300 PF00285 Citrate synthase, C-terminal domain D3H41_04305 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D3H41_04310 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D3H41_04315 PF02910 Fumarate reductase flavoprotein C-term D3H41_04315 PF00890 FAD binding domain D3H41_04320 PF13085 2Fe-2S iron-sulfur cluster binding domain D3H41_04325 PF16078 2-oxoglutarate dehydrogenase N-terminus D3H41_04325 PF00676 Dehydrogenase E1 component D3H41_04325 PF16870 2-oxoglutarate dehydrogenase C-terminal D3H41_04325 PF02779 Transketolase, pyrimidine binding domain D3H41_04330 PF02817 e3 binding domain D3H41_04330 PF00364 Biotin-requiring enzyme D3H41_04330 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D3H41_04335 PF08442 ATP-grasp domain D3H41_04335 PF00549 CoA-ligase D3H41_04340 PF02629 CoA binding domain D3H41_04340 PF00549 CoA-ligase D3H41_04345 PF00950 ABC 3 transport family D3H41_04350 PF00005 ABC transporter D3H41_04355 PF01297 Zinc-uptake complex component A periplasmic D3H41_04360 PF12833 Helix-turn-helix domain D3H41_04360 PF02311 AraC-like ligand binding domain D3H41_04365 PF04023 FeoA domain D3H41_04370 PF02421 Ferrous iron transport protein B D3H41_04370 PF17910 FeoB cytosolic helical domain D3H41_04370 PF07664 Ferrous iron transport protein B C terminus D3H41_04370 PF07670 Nucleoside recognition D3H41_04390 PF05746 DALR anticodon binding domain D3H41_04390 PF03485 Arginyl tRNA synthetase N terminal domain D3H41_04390 PF00750 tRNA synthetases class I (R) D3H41_04400 PF06185 YecM protein D3H41_04410 PF00089 Trypsin D3H41_04415 PF01842 ACT domain D3H41_04415 PF00551 Formyl transferase D3H41_04420 PF04851 Type III restriction enzyme, res subunit D3H41_04420 PF13307 Helicase C-terminal domain D3H41_04425 PF00814 Glycoprotease family D3H41_04435 PF03843 Outer membrane lipoprotein Slp family D3H41_04440 PF00561 alpha/beta hydrolase fold D3H41_04445 PF00501 AMP-binding enzyme D3H41_04445 PF13193 AMP-binding enzyme C-terminal domain D3H41_04450 PF00570 HRDC domain D3H41_04450 PF01612 3'-5' exonuclease D3H41_04455 PF03776 Septum formation topological specificity factor MinE D3H41_04460 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D3H41_04465 PF05209 Septum formation inhibitor MinC, N-terminal domain D3H41_04465 PF03775 Septum formation inhibitor MinC, C-terminal domain D3H41_04470 PF05166 YcgL domain D3H41_04475 PF13406 Transglycosylase SLT domain D3H41_04480 PF03466 LysR substrate binding domain D3H41_04480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_04485 PF01773 Na+ dependent nucleoside transporter N-terminus D3H41_04485 PF07662 Na+ dependent nucleoside transporter C-terminus D3H41_04485 PF07670 Nucleoside recognition D3H41_04490 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D3H41_04490 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D3H41_04500 PF00109 Beta-ketoacyl synthase, N-terminal domain D3H41_04500 PF02801 Beta-ketoacyl synthase, C-terminal domain D3H41_04510 PF07977 FabA-like domain D3H41_04515 PF00109 Beta-ketoacyl synthase, N-terminal domain D3H41_04515 PF02801 Beta-ketoacyl synthase, C-terminal domain D3H41_04540 PF00221 Aromatic amino acid lyase D3H41_04545 PF00535 Glycosyl transferase family 2 D3H41_04550 PF07977 FabA-like domain D3H41_04565 PF00550 Phosphopantetheine attachment site D3H41_04570 PF00550 Phosphopantetheine attachment site D3H41_04595 PF04820 Tryptophan halogenase D3H41_04605 PF00271 Helicase conserved C-terminal domain D3H41_04605 PF00270 DEAD/DEAH box helicase D3H41_04610 PF02254 TrkA-N domain D3H41_04610 PF02080 TrkA-C domain D3H41_04615 PF02386 Cation transport protein D3H41_04630 PF02696 Uncharacterized ACR, YdiU/UPF0061 family D3H41_04635 PF03480 Bacterial extracellular solute-binding protein, family 7 D3H41_04640 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D3H41_04645 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3H41_04655 PF02954 Bacterial regulatory protein, Fis family D3H41_04655 PF00158 Sigma-54 interaction domain D3H41_04655 PF00072 Response regulator receiver domain D3H41_04660 PF02743 Cache domain D3H41_04660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_04660 PF00512 His Kinase A (phospho-acceptor) domain D3H41_04670 PF05697 Bacterial trigger factor protein (TF) D3H41_04670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D3H41_04670 PF05698 Bacterial trigger factor protein (TF) C-terminus D3H41_04675 PF00574 Clp protease D3H41_04680 PF06689 ClpX C4-type zinc finger D3H41_04680 PF07724 AAA domain (Cdc48 subfamily) D3H41_04680 PF10431 C-terminal, D2-small domain, of ClpB protein D3H41_04685 PF05362 Lon protease (S16) C-terminal proteolytic domain D3H41_04685 PF00004 ATPase family associated with various cellular activities (AAA) D3H41_04685 PF02190 ATP-dependent protease La (LON) substrate-binding domain D3H41_04690 PF00216 Bacterial DNA-binding protein D3H41_04695 PF13145 PPIC-type PPIASE domain D3H41_04715 PF01966 HD domain D3H41_04715 PF13286 Phosphohydrolase-associated domain D3H41_04725 PF00155 Aminotransferase class I and II D3H41_04730 PF00425 chorismate binding enzyme D3H41_04735 PF16582 Middle domain of thiamine pyrophosphate D3H41_04735 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3H41_04735 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3H41_04740 PF12697 Alpha/beta hydrolase family D3H41_04745 PF00378 Enoyl-CoA hydratase/isomerase D3H41_04750 PF13378 Enolase C-terminal domain-like D3H41_04755 PF13193 AMP-binding enzyme C-terminal domain D3H41_04755 PF00501 AMP-binding enzyme D3H41_04765 PF03601 Conserved hypothetical protein 698 D3H41_04770 PF07690 Major Facilitator Superfamily D3H41_04815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3H41_04815 PF00529 HlyD membrane-fusion protein of T1SS D3H41_04820 PF00873 AcrB/AcrD/AcrF family D3H41_04840 PF00291 Pyridoxal-phosphate dependent enzyme D3H41_04845 PF01037 Lrp/AsnC ligand binding domain D3H41_04845 PF13404 AsnC-type helix-turn-helix domain D3H41_04860 PF09619 Type III secretion system lipoprotein chaperone (YscW) D3H41_04865 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D3H41_04875 PF08448 PAS fold D3H41_04875 PF00990 Diguanylate cyclase, GGDEF domain D3H41_04885 PF08032 RNA 2'-O ribose methyltransferase substrate binding D3H41_04885 PF00588 SpoU rRNA Methylase family D3H41_04890 PF00571 CBS domain D3H41_04890 PF00478 IMP dehydrogenase / GMP reductase domain D3H41_04895 PF00403 Heavy-metal-associated domain D3H41_04900 PF01048 Phosphorylase superfamily D3H41_04910 PF00672 HAMP domain D3H41_04910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_04915 PF01230 HIT domain D3H41_04930 PF08139 Prokaryotic membrane lipoprotein lipid attachment site D3H41_04930 PF13036 Peptidoglycan-synthase activator LpoB D3H41_04935 PF01636 Phosphotransferase enzyme family D3H41_04940 PF05728 Uncharacterised protein family (UPF0227) D3H41_04945 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_04960 PF03461 TRCF domain D3H41_04960 PF00271 Helicase conserved C-terminal domain D3H41_04960 PF17757 UvrB interaction domain D3H41_04960 PF00270 DEAD/DEAH box helicase D3H41_04960 PF02559 CarD-like/TRCF domain D3H41_04970 PF12704 MacB-like periplasmic core domain D3H41_04970 PF02687 FtsX-like permease family D3H41_04975 PF00005 ABC transporter D3H41_04980 PF02687 FtsX-like permease family D3H41_04980 PF12704 MacB-like periplasmic core domain D3H41_04990 PF13567 Domain of unknown function (DUF4131) D3H41_04990 PF00753 Metallo-beta-lactamase superfamily D3H41_04990 PF03772 Competence protein D3H41_05000 PF00005 ABC transporter D3H41_05000 PF00664 ABC transporter transmembrane region D3H41_05005 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D3H41_05010 PF03966 Trm112p-like protein D3H41_05015 PF02348 Cytidylyltransferase D3H41_05020 PF04293 SpoVR like protein D3H41_05025 PF04285 Protein of unknown function (DUF444) D3H41_05030 PF06798 PrkA serine protein kinase C-terminal domain D3H41_05030 PF08298 PrkA AAA domain D3H41_05040 PF03887 YfbU domain D3H41_05050 PF04055 Radical SAM superfamily D3H41_05060 PF01228 Glycine radical D3H41_05060 PF02901 Pyruvate formate lyase-like D3H41_05080 PF00005 ABC transporter D3H41_05085 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3H41_05090 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_05095 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_05105 PF03372 Endonuclease/Exonuclease/phosphatase family D3H41_05110 PF10689 Protein of unknown function (DUF2496) D3H41_05115 PF07445 Primosomal replication protein priC D3H41_05120 PF01925 Sulfite exporter TauE/SafE D3H41_05125 PF13307 Helicase C-terminal domain D3H41_05125 PF06733 DEAD_2 D3H41_05135 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) D3H41_05140 PF00849 RNA pseudouridylate synthase D3H41_05145 PF03971 Monomeric isocitrate dehydrogenase D3H41_05150 PF00313 'Cold-shock' DNA-binding domain D3H41_05155 PF02617 ATP-dependent Clp protease adaptor protein ClpS D3H41_05160 PF10431 C-terminal, D2-small domain, of ClpB protein D3H41_05160 PF07724 AAA domain (Cdc48 subfamily) D3H41_05160 PF02861 Clp amino terminal domain, pathogenicity island component D3H41_05160 PF17871 AAA lid domain D3H41_05160 PF00004 ATPase family associated with various cellular activities (AAA) D3H41_05165 PF01176 Translation initiation factor 1A / IF-1 D3H41_05170 PF04377 Arginine-tRNA-protein transferase, C terminus D3H41_05170 PF04376 Arginine-tRNA-protein transferase, N terminus D3H41_05175 PF03588 Leucyl/phenylalanyl-tRNA protein transferase D3H41_05185 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D3H41_05190 PF10692 Protein of unknown function (DUF2498) D3H41_05195 PF01751 Toprim domain D3H41_05195 PF01396 Topoisomerase DNA binding C4 zinc finger D3H41_05195 PF01131 DNA topoisomerase D3H41_05195 PF08272 Topoisomerase I zinc-ribbon-like D3H41_05200 PF00483 Nucleotidyl transferase D3H41_05205 PF00534 Glycosyl transferases group 1 D3H41_05205 PF08323 Starch synthase catalytic domain D3H41_05225 PF04994 TfoX C-terminal domain D3H41_05225 PF04993 TfoX N-terminal domain D3H41_05230 PF00356 Bacterial regulatory proteins, lacI family D3H41_05235 PF02613 Nitrate reductase delta subunit D3H41_05240 PF00072 Response regulator receiver domain D3H41_05240 PF00486 Transcriptional regulatory protein, C terminal D3H41_05245 PF02698 DUF218 domain D3H41_05255 PF17192 MukF middle domain D3H41_05255 PF03882 MukF winged-helix domain D3H41_05255 PF17193 MukF C-terminal domain D3H41_05260 PF04288 MukE-like family D3H41_05265 PF04310 MukB N-terminal D3H41_05265 PF16330 MukB hinge domain D3H41_05285 PF18030 RimK PreATP-grasp domain D3H41_05285 PF08443 RimK-like ATP-grasp domain D3H41_05295 PF08003 Protein of unknown function (DUF1698) D3H41_05300 PF13649 Methyltransferase domain D3H41_05305 PF01904 Protein of unknown function DUF72 D3H41_05310 PF02938 GAD domain D3H41_05310 PF00152 tRNA synthetases class II (D, K and N) D3H41_05310 PF01336 OB-fold nucleic acid binding domain D3H41_05315 PF01709 Transcriptional regulator D3H41_05320 PF02075 Crossover junction endodeoxyribonuclease RuvC D3H41_05325 PF07499 RuvA, C-terminal domain D3H41_05325 PF01330 RuvA N terminal domain D3H41_05330 PF05496 Holliday junction DNA helicase RuvB P-loop domain D3H41_05330 PF17864 RuvB AAA lid domain D3H41_05330 PF05491 RuvB C-terminal winged helix domain D3H41_05335 PF01654 Cytochrome bd terminal oxidase subunit I D3H41_05340 PF02322 Cytochrome bd terminal oxidase subunit II D3H41_05345 PF08173 Membrane bound YbgT-like protein D3H41_05355 PF03061 Thioesterase superfamily D3H41_05360 PF01618 MotA/TolQ/ExbB proton channel family D3H41_05365 PF02472 Biopolymer transport protein ExbD/TolR D3H41_05375 PF07676 WD40-like Beta Propeller Repeat D3H41_05375 PF04052 TolB amino-terminal domain D3H41_05380 PF00691 OmpA family D3H41_05385 PF13174 Tetratricopeptide repeat D3H41_05385 PF16331 TolA binding protein trimerisation D3H41_05390 PF02445 Quinolinate synthetase A protein D3H41_05400 PF03994 Domain of Unknown Function (DUF350) D3H41_05410 PF03738 Glutathionylspermidine synthase preATP-grasp D3H41_05420 PF09308 LuxQ, periplasmic D3H41_05420 PF00512 His Kinase A (phospho-acceptor) domain D3H41_05420 PF00072 Response regulator receiver domain D3H41_05420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_05425 PF06610 L-alanine exporter D3H41_05450 PF00075 RNase H D3H41_05455 PF00239 Resolvase, N terminal domain D3H41_05455 PF02796 Helix-turn-helix domain of resolvase D3H41_05465 PF02322 Cytochrome bd terminal oxidase subunit II D3H41_05470 PF01654 Cytochrome bd terminal oxidase subunit I D3H41_05485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_05485 PF17200 Single Cache domain 2 D3H41_05485 PF00672 HAMP domain D3H41_05490 PF00529 HlyD membrane-fusion protein of T1SS D3H41_05490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3H41_05495 PF00873 AcrB/AcrD/AcrF family D3H41_05510 PF00579 tRNA synthetases class I (W and Y) D3H41_05520 PF03372 Endonuclease/Exonuclease/phosphatase family D3H41_05530 PF00672 HAMP domain D3H41_05530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_05535 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) D3H41_05545 PF03466 LysR substrate binding domain D3H41_05545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_05555 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D3H41_05555 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D3H41_05560 PF01037 Lrp/AsnC ligand binding domain D3H41_05565 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D3H41_05565 PF09397 Ftsk gamma domain D3H41_05565 PF17854 FtsK alpha domain D3H41_05565 PF01580 FtsK/SpoIIIE family D3H41_05570 PF03548 Outer membrane lipoprotein carrier protein LolA D3H41_05575 PF12002 MgsA AAA+ ATPase C terminal D3H41_05575 PF00004 ATPase family associated with various cellular activities (AAA) D3H41_05575 PF16193 AAA C-terminal domain D3H41_05580 PF02403 Seryl-tRNA synthetase N-terminal domain D3H41_05580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3H41_05595 PF01258 Prokaryotic dksA/traR C4-type zinc finger D3H41_05605 PF04055 Radical SAM superfamily D3H41_05605 PF06968 Biotin and Thiamin Synthesis associated domain D3H41_05610 PF00155 Aminotransferase class I and II D3H41_05615 PF08241 Methyltransferase domain D3H41_05630 PF01435 Peptidase family M48 D3H41_05640 PF00106 short chain dehydrogenase D3H41_05665 PF16036 Chalcone isomerase-like D3H41_05675 PF00206 Lyase D3H41_05675 PF08328 Adenylosuccinate lyase C-terminal D3H41_05680 PF04356 Protein of unknown function (DUF489) D3H41_05695 PF00294 pfkB family carbohydrate kinase D3H41_05700 PF00816 H-NS histone family D3H41_05705 PF03553 Na+/H+ antiporter family D3H41_05710 PF02954 Bacterial regulatory protein, Fis family D3H41_05710 PF00158 Sigma-54 interaction domain D3H41_05710 PF00072 Response regulator receiver domain D3H41_05715 PF01634 ATP phosphoribosyltransferase D3H41_05715 PF08029 HisG, C-terminal domain D3H41_05720 PF00815 Histidinol dehydrogenase D3H41_05725 PF00155 Aminotransferase class I and II D3H41_05730 PF00475 Imidazoleglycerol-phosphate dehydratase D3H41_05730 PF08645 Polynucleotide kinase 3 phosphatase D3H41_05735 PF00117 Glutamine amidotransferase class-I D3H41_05740 PF00977 Histidine biosynthesis protein D3H41_05745 PF00977 Histidine biosynthesis protein D3H41_05750 PF01502 Phosphoribosyl-AMP cyclohydrolase D3H41_05750 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D3H41_05755 PF02810 SEC-C motif D3H41_05760 PF00563 EAL domain D3H41_05760 PF08668 HDOD domain D3H41_05765 PF00149 Calcineurin-like phosphoesterase D3H41_05770 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D3H41_05775 PF01406 tRNA synthetases class I (C) catalytic domain D3H41_05775 PF09190 DALR domain D3H41_05780 PF00265 Thymidine kinase D3H41_05785 PF02698 DUF218 domain D3H41_05810 PF01226 Formate/nitrite transporter D3H41_05820 PF03649 Uncharacterised protein family (UPF0014) D3H41_05825 PF06796 Periplasmic nitrate reductase protein NapE D3H41_05830 PF03264 NapC/NirT cytochrome c family, N-terminal region D3H41_05835 PF00384 Molybdopterin oxidoreductase D3H41_05835 PF18364 Molybdopterin oxidoreductase N-terminal domain D3H41_05835 PF01568 Molydopterin dinucleotide binding domain D3H41_05850 PF01368 DHH family D3H41_05850 PF02833 DHHA2 domain D3H41_05860 PF00005 ABC transporter D3H41_05865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_05865 PF00005 ABC transporter D3H41_05870 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_05870 PF12911 N-terminal TM domain of oligopeptide transport permease C D3H41_05875 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_05880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3H41_05885 PF02954 Bacterial regulatory protein, Fis family D3H41_05885 PF00158 Sigma-54 interaction domain D3H41_05890 PF04012 PspA/IM30 family D3H41_05895 PF06667 Phage shock protein B D3H41_05900 PF04024 PspC domain D3H41_05910 PF13533 Biotin-lipoyl like D3H41_05915 PF00873 AcrB/AcrD/AcrF family D3H41_05920 PF03352 Methyladenine glycosylase D3H41_05925 PF03280 Proteobacterial lipase chaperone protein D3H41_05930 PF00561 alpha/beta hydrolase fold D3H41_05935 PF01053 Cys/Met metabolism PLP-dependent enzyme D3H41_05940 PF13091 PLD-like domain D3H41_05940 PF13396 Phospholipase_D-nuclease N-terminal D3H41_05945 PF00209 Sodium:neurotransmitter symporter family D3H41_05950 PF00849 RNA pseudouridylate synthase D3H41_05960 PF00175 Oxidoreductase NAD-binding domain D3H41_05960 PF00111 2Fe-2S iron-sulfur cluster binding domain D3H41_05960 PF00970 Oxidoreductase FAD-binding domain D3H41_05965 PF03063 Prismane/CO dehydrogenase family D3H41_05970 PF01590 GAF domain D3H41_05970 PF00158 Sigma-54 interaction domain D3H41_05985 PF01066 CDP-alcohol phosphatidyltransferase D3H41_05990 PF00005 ABC transporter D3H41_05995 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_06000 PF13416 Bacterial extracellular solute-binding protein D3H41_06010 PF06945 Protein of unknown function (DUF1289) D3H41_06025 PF02872 5'-nucleotidase, C-terminal domain D3H41_06025 PF00149 Calcineurin-like phosphoesterase D3H41_06035 PF01386 Ribosomal L25p family D3H41_06040 PF00512 His Kinase A (phospho-acceptor) domain D3H41_06040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_06040 PF00672 HAMP domain D3H41_06045 PF00072 Response regulator receiver domain D3H41_06045 PF00486 Transcriptional regulatory protein, C terminal D3H41_06055 PF04851 Type III restriction enzyme, res subunit D3H41_06055 PF00271 Helicase conserved C-terminal domain D3H41_06060 PF00849 RNA pseudouridylate synthase D3H41_06060 PF01479 S4 domain D3H41_06070 PF07690 Major Facilitator Superfamily D3H41_06080 PF13460 NAD(P)H-binding D3H41_06080 PF11066 Protein of unknown function (DUF2867) D3H41_06085 PF01554 MatE D3H41_06090 PF00005 ABC transporter D3H41_06105 PF06965 Na+/H+ antiporter 1 D3H41_06110 PF16295 Tetracyclin repressor-like, C-terminal domain D3H41_06110 PF00440 Bacterial regulatory proteins, tetR family D3H41_06115 PF09317 Domain of unknown function (DUF1974) D3H41_06115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3H41_06115 PF02770 Acyl-CoA dehydrogenase, middle domain D3H41_06115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3H41_06120 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase D3H41_06120 PF12241 Trans-2-enoyl-CoA reductase catalytic region D3H41_06120 PF07055 Enoyl reductase FAD binding domain D3H41_06125 PF02080 TrkA-C domain D3H41_06125 PF06826 Predicted Permease Membrane Region D3H41_06130 PF00462 Glutaredoxin D3H41_06135 PF00465 Iron-containing alcohol dehydrogenase D3H41_06140 PF01380 SIS domain D3H41_06140 PF01418 Helix-turn-helix domain, rpiR family D3H41_06145 PF00282 Pyridoxal-dependent decarboxylase conserved domain D3H41_06155 PF03956 Lysine exporter LysO D3H41_06175 PF04994 TfoX C-terminal domain D3H41_06175 PF04993 TfoX N-terminal domain D3H41_06190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_06190 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3H41_06190 PF00512 His Kinase A (phospho-acceptor) domain D3H41_06200 PF00266 Aminotransferase class-V D3H41_06205 PF00291 Pyridoxal-phosphate dependent enzyme D3H41_06210 PF00005 ABC transporter D3H41_06210 PF00664 ABC transporter transmembrane region D3H41_06215 PF00664 ABC transporter transmembrane region D3H41_06215 PF00005 ABC transporter D3H41_06220 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_06230 PF00266 Aminotransferase class-V D3H41_06240 PF00072 Response regulator receiver domain D3H41_06240 PF00990 Diguanylate cyclase, GGDEF domain D3H41_06245 PF00939 Sodium:sulfate symporter transmembrane region D3H41_06250 PF02698 DUF218 domain D3H41_06255 PF03949 Malic enzyme, NAD binding domain D3H41_06255 PF00390 Malic enzyme, N-terminal domain D3H41_06260 PF08482 ATP-dependent helicase C-terminal D3H41_06260 PF00271 Helicase conserved C-terminal domain D3H41_06260 PF04408 Helicase associated domain (HA2) D3H41_06260 PF00270 DEAD/DEAH box helicase D3H41_06270 PF16655 PhoD-like phosphatase, N-terminal domain D3H41_06270 PF09423 PhoD-like phosphatase D3H41_06275 PF01259 SAICAR synthetase D3H41_06295 PF00691 OmpA family D3H41_06295 PF05736 OprF membrane domain D3H41_06310 PF02913 FAD linked oxidases, C-terminal domain D3H41_06310 PF01565 FAD binding domain D3H41_06310 PF13183 4Fe-4S dicluster domain D3H41_06315 PF04191 Phospholipid methyltransferase D3H41_06325 PF00221 Aromatic amino acid lyase D3H41_06330 PF17391 Urocanase N-terminal domain D3H41_06330 PF17392 Urocanase C-terminal domain D3H41_06330 PF01175 Urocanase Rossmann-like domain D3H41_06335 PF00491 Arginase family D3H41_06340 PF01979 Amidohydrolase family D3H41_06345 PF00392 Bacterial regulatory proteins, gntR family D3H41_06345 PF07702 UTRA domain D3H41_06360 PF03129 Anticodon binding domain D3H41_06360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D3H41_06360 PF02824 TGS domain D3H41_06360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3H41_06365 PF05198 Translation initiation factor IF-3, N-terminal domain D3H41_06365 PF00707 Translation initiation factor IF-3, C-terminal domain D3H41_06370 PF01632 Ribosomal protein L35 D3H41_06375 PF00453 Ribosomal protein L20 D3H41_06380 PF01906 Putative heavy-metal-binding D3H41_06415 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D3H41_06415 PF01409 tRNA synthetases class II core domain (F) D3H41_06420 PF01588 Putative tRNA binding domain D3H41_06420 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D3H41_06420 PF03483 B3/4 domain D3H41_06420 PF03484 tRNA synthetase B5 domain D3H41_06420 PF03147 Ferredoxin-fold anticodon binding domain D3H41_06430 PF00216 Bacterial DNA-binding protein D3H41_06440 PF05724 Thiopurine S-methyltransferase (TPMT) D3H41_06445 PF02222 ATP-grasp domain D3H41_06455 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D3H41_06455 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region D3H41_06460 PF04172 LrgB-like family D3H41_06465 PF03788 LrgA family D3H41_06470 PF00929 Exonuclease D3H41_06470 PF08411 Exonuclease C-terminal D3H41_06480 PF13460 NAD(P)H-binding D3H41_06485 PF02277 Phosphoribosyltransferase D3H41_06490 PF02654 Cobalamin-5-phosphate synthase D3H41_06495 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase D3H41_06510 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family D3H41_06515 PF01032 FecCD transport family D3H41_06520 PF00005 ABC transporter D3H41_06540 PF03466 LysR substrate binding domain D3H41_06540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_06550 PF01863 Protein of unknown function DUF45 D3H41_06555 PF05971 RNA methyltransferase D3H41_06575 PF00392 Bacterial regulatory proteins, gntR family D3H41_06580 PF00171 Aldehyde dehydrogenase family D3H41_06585 PF05544 Proline racemase D3H41_06600 PF02423 Ornithine cyclodeaminase/mu-crystallin family D3H41_06605 PF00701 Dihydrodipicolinate synthetase family D3H41_06610 PF00005 ABC transporter D3H41_06610 PF08402 TOBE domain D3H41_06615 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_06620 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_06630 PF08453 Peptidase family M9 N-terminal D3H41_06630 PF01752 Collagenase D3H41_06640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_06640 PF00005 ABC transporter D3H41_06645 PF00005 ABC transporter D3H41_06645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_06650 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_06650 PF12911 N-terminal TM domain of oligopeptide transport permease C D3H41_06655 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_06660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3H41_06665 PF01546 Peptidase family M20/M25/M40 D3H41_06665 PF07687 Peptidase dimerisation domain D3H41_06670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3H41_06675 PF04209 homogentisate 1,2-dioxygenase D3H41_06685 PF14497 Glutathione S-transferase, C-terminal domain D3H41_06685 PF02798 Glutathione S-transferase, N-terminal domain D3H41_06735 PF07007 Lysozyme inhibitor LprI D3H41_06760 PF02694 Uncharacterised BCR, YnfA/UPF0060 family D3H41_06775 PF03553 Na+/H+ antiporter family D3H41_06780 PF00120 Glutamine synthetase, catalytic domain D3H41_06790 PF07722 Peptidase C26 D3H41_06795 PF07883 Cupin domain D3H41_06795 PF01381 Helix-turn-helix D3H41_06800 PF00171 Aldehyde dehydrogenase family D3H41_06805 PF01266 FAD dependent oxidoreductase D3H41_06810 PF00795 Carbon-nitrogen hydrolase D3H41_06815 PF04371 Porphyromonas-type peptidyl-arginine deiminase D3H41_06820 PF00171 Aldehyde dehydrogenase family D3H41_06825 PF00202 Aminotransferase class-III D3H41_06830 PF12792 CSS motif domain associated with EAL D3H41_06830 PF00563 EAL domain D3H41_06840 PF01047 MarR family D3H41_06845 PF04237 YjbR D3H41_06870 PF00512 His Kinase A (phospho-acceptor) domain D3H41_06870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_06870 PF00072 Response regulator receiver domain D3H41_06870 PF00672 HAMP domain D3H41_06870 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3H41_06870 PF01627 Hpt domain D3H41_06875 PF03707 Bacterial signalling protein N terminal repeat D3H41_06875 PF00563 EAL domain D3H41_06875 PF00990 Diguanylate cyclase, GGDEF domain D3H41_06890 PF04204 Homoserine O-succinyltransferase D3H41_06900 PF00893 Small Multidrug Resistance protein D3H41_06905 PF03279 Bacterial lipid A biosynthesis acyltransferase D3H41_06910 PF02074 Carboxypeptidase Taq (M32) metallopeptidase D3H41_06915 PF01810 LysE type translocator D3H41_06925 PF01235 Sodium:alanine symporter family D3H41_06950 PF00884 Sulfatase D3H41_06955 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D3H41_06960 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_06965 PF00571 CBS domain D3H41_06965 PF00005 ABC transporter D3H41_06980 PF02028 BCCT, betaine/carnitine/choline family transporter D3H41_06990 PF00583 Acetyltransferase (GNAT) family D3H41_06995 PF00202 Aminotransferase class-III D3H41_07000 PF06339 Ectoine synthase D3H41_07005 PF13840 ACT domain D3H41_07005 PF00696 Amino acid kinase family D3H41_07010 PF00884 Sulfatase D3H41_07020 PF03781 Sulfatase-modifying factor enzyme 1 D3H41_07025 PF13186 Iron-sulfur cluster-binding domain D3H41_07025 PF04055 Radical SAM superfamily D3H41_07040 PF00884 Sulfatase D3H41_07045 PF00884 Sulfatase D3H41_07055 PF03412 Peptidase C39 family D3H41_07055 PF00005 ABC transporter D3H41_07055 PF00664 ABC transporter transmembrane region D3H41_07065 PF02321 Outer membrane efflux protein D3H41_07080 PF00455 DeoR C terminal sensor domain D3H41_07080 PF08220 DeoR-like helix-turn-helix domain D3H41_07085 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D3H41_07085 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3H41_07090 PF03928 Haem-degrading D3H41_07095 PF00990 Diguanylate cyclase, GGDEF domain D3H41_07095 PF00072 Response regulator receiver domain D3H41_07115 PF00939 Sodium:sulfate symporter transmembrane region D3H41_07120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_07120 PF00512 His Kinase A (phospho-acceptor) domain D3H41_07125 PF00158 Sigma-54 interaction domain D3H41_07125 PF02954 Bacterial regulatory protein, Fis family D3H41_07125 PF00072 Response regulator receiver domain D3H41_07130 PF00990 Diguanylate cyclase, GGDEF domain D3H41_07130 PF03707 Bacterial signalling protein N terminal repeat D3H41_07130 PF00563 EAL domain D3H41_07135 PF01966 HD domain D3H41_07135 PF11871 Domain of unknown function (DUF3391) D3H41_07140 PF01810 LysE type translocator D3H41_07145 PF11230 Protein of unknown function (DUF3029) D3H41_07150 PF04055 Radical SAM superfamily D3H41_07160 PF03741 Integral membrane protein TerC family D3H41_07170 PF01966 HD domain D3H41_07175 PF00465 Iron-containing alcohol dehydrogenase D3H41_07180 PF03222 Tryptophan/tyrosine permease family D3H41_07195 PF00005 ABC transporter D3H41_07200 PF01497 Periplasmic binding protein D3H41_07205 PF01032 FecCD transport family D3H41_07210 PF07715 TonB-dependent Receptor Plug Domain D3H41_07210 PF00593 TonB dependent receptor D3H41_07220 PF00664 ABC transporter transmembrane region D3H41_07220 PF00005 ABC transporter D3H41_07225 PF00664 ABC transporter transmembrane region D3H41_07225 PF00005 ABC transporter D3H41_07230 PF07963 Prokaryotic N-terminal methylation motif D3H41_07230 PF08334 Type II secretion system (T2SS), protein G D3H41_07240 PF03466 LysR substrate binding domain D3H41_07240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_07250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3H41_07250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D3H41_07265 PF00012 Hsp70 protein D3H41_07270 PF00012 Hsp70 protein D3H41_07280 PF00990 Diguanylate cyclase, GGDEF domain D3H41_07315 PF02525 Flavodoxin-like fold D3H41_07320 PF00271 Helicase conserved C-terminal domain D3H41_07320 PF00270 DEAD/DEAH box helicase D3H41_07320 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D3H41_07320 PF04408 Helicase associated domain (HA2) D3H41_07320 PF11898 Domain of unknown function (DUF3418) D3H41_07335 PF02028 BCCT, betaine/carnitine/choline family transporter D3H41_07345 PF02397 Bacterial sugar transferase D3H41_07355 PF13439 Glycosyltransferase Family 4 D3H41_07355 PF00534 Glycosyl transferases group 1 D3H41_07385 PF13439 Glycosyltransferase Family 4 D3H41_07385 PF00534 Glycosyl transferases group 1 D3H41_07390 PF00534 Glycosyl transferases group 1 D3H41_07390 PF13439 Glycosyltransferase Family 4 D3H41_07395 PF02954 Bacterial regulatory protein, Fis family D3H41_07395 PF00158 Sigma-54 interaction domain D3H41_07395 PF00072 Response regulator receiver domain D3H41_07410 PF02563 Polysaccharide biosynthesis/export protein D3H41_07410 PF10531 SLBB domain D3H41_07420 PF01740 STAS domain D3H41_07425 PF14743 DNA ligase OB-like domain D3H41_07425 PF01068 ATP dependent DNA ligase domain D3H41_07435 PF01554 MatE D3H41_07440 PF00677 Lumazine binding domain D3H41_07455 PF00072 Response regulator receiver domain D3H41_07455 PF01339 CheB methylesterase D3H41_07460 PF00990 Diguanylate cyclase, GGDEF domain D3H41_07460 PF05230 MASE2 domain D3H41_07470 PF00877 NlpC/P60 family D3H41_07475 PF02743 Cache domain D3H41_07475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_07475 PF00672 HAMP domain D3H41_07505 PF00480 ROK family D3H41_07515 PF00994 Probable molybdopterin binding domain D3H41_07515 PF03453 MoeA N-terminal region (domain I and II) D3H41_07515 PF03454 MoeA C-terminal region (domain IV) D3H41_07520 PF12804 MobA-like NTP transferase domain D3H41_07525 PF00005 ABC transporter D3H41_07525 PF08402 TOBE domain D3H41_07530 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_07535 PF12849 PBP superfamily domain D3H41_07540 PF00158 Sigma-54 interaction domain D3H41_07540 PF00072 Response regulator receiver domain D3H41_07540 PF02954 Bacterial regulatory protein, Fis family D3H41_07545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_07545 PF00512 His Kinase A (phospho-acceptor) domain D3H41_07555 PF12848 ABC transporter D3H41_07555 PF00005 ABC transporter D3H41_07560 PF02634 FdhD/NarQ family D3H41_07580 PF02613 Nitrate reductase delta subunit D3H41_07590 PF00384 Molybdopterin oxidoreductase D3H41_07590 PF01568 Molydopterin dinucleotide binding domain D3H41_07590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3H41_07595 PF13247 4Fe-4S dicluster domain D3H41_07710 PF00909 Ammonium Transporter Family D3H41_07715 PF02146 Sir2 family D3H41_07720 PF13416 Bacterial extracellular solute-binding protein D3H41_07725 PF13416 Bacterial extracellular solute-binding protein D3H41_07730 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_07735 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_07740 PF00005 ABC transporter D3H41_07740 PF08402 TOBE domain D3H41_07760 PF01171 PP-loop family D3H41_07765 PF00582 Universal stress protein family D3H41_07770 PF00027 Cyclic nucleotide-binding domain D3H41_07770 PF13545 Crp-like helix-turn-helix domain D3H41_07785 PF00403 Heavy-metal-associated domain D3H41_07795 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP D3H41_07795 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3H41_07810 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3H41_07825 PF00072 Response regulator receiver domain D3H41_07825 PF09308 LuxQ, periplasmic D3H41_07825 PF00512 His Kinase A (phospho-acceptor) domain D3H41_07825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_07890 PF13175 AAA ATPase domain D3H41_08225 PF06303 MatP N-terminal domain D3H41_08225 PF17414 MatP C-terminal ribbon-helix-helix domain D3H41_08230 PF05362 Lon protease (S16) C-terminal proteolytic domain D3H41_08230 PF13654 AAA domain D3H41_08235 PF07977 FabA-like domain D3H41_08240 PF04957 Ribosome modulation factor D3H41_08260 PF02926 THUMP domain D3H41_08260 PF10672 S-adenosylmethionine-dependent methyltransferase D3H41_08260 PF01170 Putative RNA methylase family UPF0020 D3H41_08265 PF07126 Cell-division protein ZapC D3H41_08270 PF01180 Dihydroorotate dehydrogenase D3H41_08280 PF05088 Bacterial NAD-glutamate dehydrogenase D3H41_08290 PF01433 Peptidase family M1 domain D3H41_08290 PF11940 Domain of unknown function (DUF3458) Ig-like fold D3H41_08290 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D3H41_08300 PF17804 Tail specific protease N-terminal domain D3H41_08300 PF03572 Peptidase family S41 D3H41_08300 PF00595 PDZ domain D3H41_08300 PF11818 C-terminal domain of tail specific protease (DUF3340) D3H41_08305 PF17516 ProQ C-terminal domain D3H41_08305 PF04352 ProQ/FINO family D3H41_08310 PF13185 GAF domain D3H41_08315 PF00005 ABC transporter D3H41_08315 PF00664 ABC transporter transmembrane region D3H41_08320 PF04403 Paraquat-inducible protein A D3H41_08325 PF02470 MlaD protein D3H41_08330 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF D3H41_08330 PF01189 16S rRNA methyltransferase RsmB/F D3H41_08330 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF D3H41_08350 PF00793 DAHP synthetase I family D3H41_08355 PF04461 Protein of unknown function (DUF520) D3H41_08360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3H41_08360 PF10414 Sirohaem synthase dimerisation region D3H41_08360 PF14824 Sirohaem biosynthesis protein central D3H41_08370 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3H41_08375 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_08380 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_08385 PF00005 ABC transporter D3H41_08390 PF01027 Inhibitor of apoptosis-promoting Bax1 D3H41_08405 PF04358 DsrC like protein D3H41_08410 PF00708 Acylphosphatase D3H41_08415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_08415 PF02743 Cache domain D3H41_08415 PF00672 HAMP domain D3H41_08420 PF17785 PUA-like domain D3H41_08420 PF10672 S-adenosylmethionine-dependent methyltransferase D3H41_08435 PF00691 OmpA family D3H41_08435 PF05736 OprF membrane domain D3H41_08450 PF05736 OprF membrane domain D3H41_08450 PF00691 OmpA family D3H41_08460 PF00990 Diguanylate cyclase, GGDEF domain D3H41_08460 PF13185 GAF domain D3H41_08465 PF09339 IclR helix-turn-helix domain D3H41_08465 PF01614 Bacterial transcriptional regulator D3H41_08475 PF00248 Aldo/keto reductase family D3H41_08480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_08480 PF03466 LysR substrate binding domain D3H41_08490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_08490 PF03466 LysR substrate binding domain D3H41_08495 PF07690 Major Facilitator Superfamily D3H41_08510 PF02311 AraC-like ligand binding domain D3H41_08510 PF12833 Helix-turn-helix domain D3H41_08515 PF00857 Isochorismatase family D3H41_08520 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3H41_08530 PF00107 Zinc-binding dehydrogenase D3H41_08530 PF08240 Alcohol dehydrogenase GroES-like domain D3H41_08535 PF02607 B12 binding domain D3H41_08535 PF02965 Vitamin B12 dependent methionine synthase, activation domain D3H41_08535 PF02574 Homocysteine S-methyltransferase D3H41_08535 PF02310 B12 binding domain D3H41_08535 PF00809 Pterin binding enzyme D3H41_08540 PF00005 ABC transporter D3H41_08545 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_08550 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3H41_08560 PF00267 Gram-negative porin D3H41_08565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_08565 PF03466 LysR substrate binding domain D3H41_08575 PF00873 AcrB/AcrD/AcrF family D3H41_08580 PF03466 LysR substrate binding domain D3H41_08580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_08590 PF03466 LysR substrate binding domain D3H41_08590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_08595 PF01810 LysE type translocator D3H41_08605 PF06508 Queuosine biosynthesis protein QueC D3H41_08610 PF04055 Radical SAM superfamily D3H41_08625 PF00089 Trypsin D3H41_08635 PF00501 AMP-binding enzyme D3H41_08635 PF13193 AMP-binding enzyme C-terminal domain D3H41_08635 PF16177 Acetyl-coenzyme A synthetase N-terminus D3H41_08640 PF04303 PrpF protein D3H41_08645 PF00694 Aconitase C-terminal domain D3H41_08645 PF00330 Aconitase family (aconitate hydratase) D3H41_08650 PF00285 Citrate synthase, C-terminal domain D3H41_08680 PF01970 Tripartite tricarboxylate transporter TctA family D3H41_08690 PF01925 Sulfite exporter TauE/SafE D3H41_08695 PF16868 NMT1-like family D3H41_08700 PF05844 YopD protein D3H41_08710 PF07720 Tetratricopeptide repeat D3H41_08715 PF04792 V antigen (LcrV) protein D3H41_08725 PF09621 Type III secretion system regulator (LcrR) D3H41_08730 PF00771 FHIPEP family D3H41_08750 PF09059 TyeA D3H41_08760 PF18269 T3SS EscN ATPase C-terminal domain D3H41_08760 PF02874 ATP synthase alpha/beta family, beta-barrel domain D3H41_08760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3H41_08775 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D3H41_08780 PF00813 FliP family D3H41_08785 PF01313 Bacterial export proteins, family 3 D3H41_08790 PF01311 Bacterial export proteins, family 1 D3H41_08795 PF01312 FlhB HrpN YscU SpaS Family D3H41_08800 PF12833 Helix-turn-helix domain D3H41_08800 PF12852 Cupin D3H41_08830 PF02661 Fic/DOC family D3H41_08840 PF02108 Flagellar assembly protein FliH D3H41_08850 PF01514 Secretory protein of YscJ/FliF family D3H41_08855 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI D3H41_08865 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) D3H41_08870 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF D3H41_08880 PF16693 Inner membrane component of T3SS, periplasmic domain D3H41_08880 PF16697 Inner membrane component of T3SS, cytoplasmic domain D3H41_08900 PF12833 Helix-turn-helix domain D3H41_08920 PF00171 Aldehyde dehydrogenase family D3H41_08925 PF00158 Sigma-54 interaction domain D3H41_08925 PF02954 Bacterial regulatory protein, Fis family D3H41_08925 PF01590 GAF domain D3H41_08940 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3H41_08940 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D3H41_08945 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D3H41_08950 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D3H41_08950 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D3H41_08955 PF02311 AraC-like ligand binding domain D3H41_08955 PF12833 Helix-turn-helix domain D3H41_08960 PF00593 TonB dependent receptor D3H41_08960 PF07715 TonB-dependent Receptor Plug Domain D3H41_08965 PF00072 Response regulator receiver domain D3H41_08965 PF12431 Transcriptional regulator D3H41_08970 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain D3H41_08970 PF17203 Single cache domain 3 D3H41_08970 PF00989 PAS fold D3H41_08970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_08985 PF13533 Biotin-lipoyl like D3H41_09000 PF03466 LysR substrate binding domain D3H41_09000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_09015 PF08543 Phosphomethylpyrimidine kinase D3H41_09020 PF00155 Aminotransferase class I and II D3H41_09025 PF02080 TrkA-C domain D3H41_09025 PF06826 Predicted Permease Membrane Region D3H41_09035 PF13533 Biotin-lipoyl like D3H41_09050 PF00135 Carboxylesterase family D3H41_09055 PF13091 PLD-like domain D3H41_09060 PF17243 POTRA domain TamA domain 1 D3H41_09060 PF01103 Surface antigen D3H41_09065 PF11008 Protein of unknown function (DUF2846) D3H41_09070 PF01810 LysE type translocator D3H41_09075 PF01810 LysE type translocator D3H41_09080 PF07237 Protein of unknown function (DUF1428) D3H41_09100 PF02272 DHHA1 domain D3H41_09100 PF01411 tRNA synthetases class II (A) D3H41_09100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D3H41_09105 PF13302 Acetyltransferase (GNAT) domain D3H41_09110 PF12464 Maltose acetyltransferase D3H41_09110 PF14602 Hexapeptide repeat of succinyl-transferase D3H41_09175 PF13333 Integrase core domain D3H41_09175 PF00665 Integrase core domain D3H41_09175 PF13276 HTH-like domain D3H41_09190 PF03831 PhnA domain D3H41_09190 PF08274 PhnA Zinc-Ribbon D3H41_09380 PF01966 HD domain D3H41_09380 PF13286 Phosphohydrolase-associated domain D3H41_09590 PF00583 Acetyltransferase (GNAT) family D3H41_09655 PF08241 Methyltransferase domain D3H41_09805 PF04463 Protein of unknown function (DUF523) D3H41_09810 PF00583 Acetyltransferase (GNAT) family D3H41_09870 PF09827 CRISPR associated protein Cas2 D3H41_09975 PF00589 Phage integrase family D3H41_09975 PF13495 Phage integrase, N-terminal SAM-like domain D3H41_10100 PF03864 Phage major capsid protein E D3H41_10110 PF01972 Serine dehydrogenase proteinase D3H41_10110 PF01957 NfeD-like C-terminal, partner-binding D3H41_10140 PF00959 Phage lysozyme D3H41_10175 PF06147 Protein of unknown function (DUF968) D3H41_10195 PF03354 Phage Terminase D3H41_10225 PF00717 Peptidase S24-like D3H41_10225 PF01381 Helix-turn-helix D3H41_10245 PF10065 Uncharacterized conserved protein (DUF2303) D3H41_10265 PF12167 Arm DNA-binding domain D3H41_10265 PF00589 Phage integrase family D3H41_10270 PF07087 Protein of unknown function (DUF1353) D3H41_10285 PF01043 SecA preprotein cross-linking domain D3H41_10285 PF07516 SecA Wing and Scaffold domain D3H41_10285 PF07517 SecA DEAD-like domain D3H41_10285 PF02810 SEC-C motif D3H41_10300 PF13302 Acetyltransferase (GNAT) domain D3H41_10305 PF00158 Sigma-54 interaction domain D3H41_10305 PF18024 Helix-turn-helix domain D3H41_10310 PF05128 Domain of unknown function (DUF697) D3H41_10315 PF04317 YcjX-like family, DUF463 D3H41_10335 PF04715 Anthranilate synthase component I, N terminal region D3H41_10335 PF00425 chorismate binding enzyme D3H41_10340 PF00072 Response regulator receiver domain D3H41_10340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_10340 PF00512 His Kinase A (phospho-acceptor) domain D3H41_10340 PF09308 LuxQ, periplasmic D3H41_10350 PF00293 NUDIX domain D3H41_10355 PF03222 Tryptophan/tyrosine permease family D3H41_10360 PF03313 Serine dehydratase alpha chain D3H41_10360 PF03315 Serine dehydratase beta chain D3H41_10365 PF00563 EAL domain D3H41_10365 PF04940 Sensors of blue-light using FAD D3H41_10375 PF01242 6-pyruvoyl tetrahydropterin synthase D3H41_10380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_10380 PF17200 Single Cache domain 2 D3H41_10380 PF00672 HAMP domain D3H41_10385 PF01336 OB-fold nucleic acid binding domain D3H41_10385 PF00152 tRNA synthetases class II (D, K and N) D3H41_10395 PF00392 Bacterial regulatory proteins, gntR family D3H41_10395 PF00155 Aminotransferase class I and II D3H41_10410 PF00155 Aminotransferase class I and II D3H41_10430 PF00672 HAMP domain D3H41_10430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_10435 PF02028 BCCT, betaine/carnitine/choline family transporter D3H41_10445 PF00196 Bacterial regulatory proteins, luxR family D3H41_10445 PF00072 Response regulator receiver domain D3H41_10450 PF17200 Single Cache domain 2 D3H41_10450 PF07730 Histidine kinase D3H41_10455 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3H41_10465 PF03480 Bacterial extracellular solute-binding protein, family 7 D3H41_10480 PF00753 Metallo-beta-lactamase superfamily D3H41_10485 PF05951 Bacterial protein of unknown function (DUF882) D3H41_10490 PF03734 L,D-transpeptidase catalytic domain D3H41_10490 PF01471 Putative peptidoglycan binding domain D3H41_10515 PF00925 GTP cyclohydrolase II D3H41_10525 PF03918 Cytochrome C biogenesis protein D3H41_10530 PF08534 Redoxin D3H41_10535 PF01578 Cytochrome C assembly protein D3H41_10535 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D3H41_10540 PF03916 Polysulphide reductase, NrfD D3H41_10545 PF13247 4Fe-4S dicluster domain D3H41_10555 PF02335 Cytochrome c552 D3H41_10570 PF03989 DNA gyrase C-terminal domain, beta-propeller D3H41_10570 PF00521 DNA gyrase/topoisomerase IV, subunit A D3H41_10585 PF02867 Ribonucleotide reductase, barrel domain D3H41_10585 PF03477 ATP cone domain D3H41_10585 PF00317 Ribonucleotide reductase, all-alpha domain D3H41_10590 PF00268 Ribonucleotide reductase, small chain D3H41_10600 PF00994 Probable molybdopterin binding domain D3H41_10615 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D3H41_10620 PF16653 Saccharopine dehydrogenase C-terminal domain D3H41_10620 PF03435 Saccharopine dehydrogenase NADP binding domain D3H41_10625 PF00202 Aminotransferase class-III D3H41_10650 PF01066 CDP-alcohol phosphatidyltransferase D3H41_10655 PF02151 UvrB/uvrC motif D3H41_10655 PF08459 UvrC Helix-hairpin-helix N-terminal D3H41_10655 PF01541 GIY-YIG catalytic domain D3H41_10660 PF00072 Response regulator receiver domain D3H41_10660 PF00196 Bacterial regulatory proteins, luxR family D3H41_10665 PF00136 DNA polymerase family B D3H41_10665 PF03104 DNA polymerase family B, exonuclease domain D3H41_10675 PF09285 Elongation factor P, C-terminal D3H41_10675 PF08207 Elongation factor P (EF-P) KOW-like domain D3H41_10675 PF01132 Elongation factor P (EF-P) OB domain D3H41_10680 PF04269 Protein of unknown function, DUF440 D3H41_10685 PF01479 S4 domain D3H41_10685 PF00849 RNA pseudouridylate synthase D3H41_10695 PF01300 Telomere recombination D3H41_10700 PF02811 PHP domain D3H41_10705 PF08056 Tryptophan operon leader peptide D3H41_10710 PF04715 Anthranilate synthase component I, N terminal region D3H41_10710 PF00425 chorismate binding enzyme D3H41_10715 PF00117 Glutamine amidotransferase class-I D3H41_10720 PF00591 Glycosyl transferase family, a/b domain D3H41_10720 PF02885 Glycosyl transferase family, helical bundle domain D3H41_10725 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D3H41_10725 PF00218 Indole-3-glycerol phosphate synthase D3H41_10730 PF00291 Pyridoxal-phosphate dependent enzyme D3H41_10735 PF00290 Tryptophan synthase alpha chain D3H41_10740 PF13545 Crp-like helix-turn-helix domain D3H41_10740 PF00027 Cyclic nucleotide-binding domain D3H41_10745 PF13193 AMP-binding enzyme C-terminal domain D3H41_10745 PF00501 AMP-binding enzyme D3H41_10755 PF00375 Sodium:dicarboxylate symporter family D3H41_10760 PF17327 Acyl homoserine lactone synthase D3H41_10765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_10765 PF00072 Response regulator receiver domain D3H41_10775 PF04279 Intracellular septation protein A D3H41_10780 PF03061 Thioesterase superfamily D3H41_10785 PF03795 YCII-related domain D3H41_10795 PF08267 Cobalamin-independent synthase, N-terminal domain D3H41_10795 PF01717 Cobalamin-independent synthase, Catalytic domain D3H41_10800 PF03466 LysR substrate binding domain D3H41_10800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_10815 PF00563 EAL domain D3H41_10815 PF08448 PAS fold D3H41_10815 PF00990 Diguanylate cyclase, GGDEF domain D3H41_10815 PF08447 PAS fold D3H41_10820 PF08497 Radical SAM N-terminal D3H41_10820 PF04055 Radical SAM superfamily D3H41_10820 PF11842 Domain of unknown function (DUF3362) D3H41_10840 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase D3H41_10845 PF00535 Glycosyl transferase family 2 D3H41_10850 PF00486 Transcriptional regulatory protein, C terminal D3H41_10850 PF00072 Response regulator receiver domain D3H41_10855 PF00672 HAMP domain D3H41_10855 PF00512 His Kinase A (phospho-acceptor) domain D3H41_10855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_10875 PF03466 LysR substrate binding domain D3H41_10875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_10880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3H41_10880 PF00529 HlyD membrane-fusion protein of T1SS D3H41_10890 PF01717 Cobalamin-independent synthase, Catalytic domain D3H41_10890 PF08267 Cobalamin-independent synthase, N-terminal domain D3H41_10910 PF12704 MacB-like periplasmic core domain D3H41_10910 PF02687 FtsX-like permease family D3H41_10910 PF00005 ABC transporter D3H41_10915 PF00005 ABC transporter D3H41_10915 PF02687 FtsX-like permease family D3H41_10915 PF12704 MacB-like periplasmic core domain D3H41_10920 PF00005 ABC transporter D3H41_10920 PF12704 MacB-like periplasmic core domain D3H41_10920 PF02687 FtsX-like permease family D3H41_10930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3H41_10950 PF00085 Thioredoxin D3H41_10965 PF00196 Bacterial regulatory proteins, luxR family D3H41_10965 PF00072 Response regulator receiver domain D3H41_10970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_10970 PF00512 His Kinase A (phospho-acceptor) domain D3H41_11010 PF11412 Disulphide bond corrector protein DsbC D3H41_11010 PF02683 Cytochrome C biogenesis protein transmembrane region D3H41_11015 PF00085 Thioredoxin D3H41_11060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3H41_11080 PF00085 Thioredoxin D3H41_11085 PF02683 Cytochrome C biogenesis protein transmembrane region D3H41_11085 PF11412 Disulphide bond corrector protein DsbC D3H41_11095 PF00072 Response regulator receiver domain D3H41_11095 PF00196 Bacterial regulatory proteins, luxR family D3H41_11100 PF00512 His Kinase A (phospho-acceptor) domain D3H41_11100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_11105 PF13247 4Fe-4S dicluster domain D3H41_11110 PF03916 Polysulphide reductase, NrfD D3H41_11115 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3H41_11115 PF00384 Molybdopterin oxidoreductase D3H41_11115 PF01568 Molydopterin dinucleotide binding domain D3H41_11120 PF00034 Cytochrome c D3H41_11125 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3H41_11130 PF04403 Paraquat-inducible protein A D3H41_11135 PF02470 MlaD protein D3H41_11155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3H41_11160 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D3H41_11165 PF18073 Rubredoxin metal binding domain D3H41_11170 PF06305 Lipopolysaccharide assembly protein A domain D3H41_11175 PF00216 Bacterial DNA-binding protein D3H41_11180 PF00575 S1 RNA binding domain D3H41_11185 PF02224 Cytidylate kinase D3H41_11190 PF01343 Peptidase family S49 D3H41_11190 PF08496 Peptidase family S49 N-terminal D3H41_11195 PF00106 short chain dehydrogenase D3H41_11210 PF01336 OB-fold nucleic acid binding domain D3H41_11210 PF02811 PHP domain D3H41_11210 PF14579 Helix-hairpin-helix motif D3H41_11210 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D3H41_11210 PF07733 Bacterial DNA polymerase III alpha NTPase domain D3H41_11215 PF01584 CheW-like domain D3H41_11215 PF00072 Response regulator receiver domain D3H41_11220 PF00480 ROK family D3H41_11225 PF02887 Pyruvate kinase, alpha/beta domain D3H41_11225 PF00224 Pyruvate kinase, barrel domain D3H41_11230 PF01734 Patatin-like phospholipase D3H41_11245 PF00209 Sodium:neurotransmitter symporter family D3H41_11260 PF00367 phosphotransferase system, EIIB D3H41_11260 PF02378 Phosphotransferase system, EIIC D3H41_11265 PF01026 TatD related DNase D3H41_11270 PF09115 DNA polymerase III, delta subunit, C terminal D3H41_11275 PF02223 Thymidylate kinase D3H41_11280 PF02618 YceG-like family D3H41_11285 PF01063 Amino-transferase class IV D3H41_11290 PF00109 Beta-ketoacyl synthase, N-terminal domain D3H41_11290 PF02801 Beta-ketoacyl synthase, C-terminal domain D3H41_11295 PF00550 Phosphopantetheine attachment site D3H41_11305 PF00698 Acyl transferase domain D3H41_11310 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D3H41_11310 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D3H41_11315 PF02504 Fatty acid synthesis protein D3H41_11320 PF01783 Ribosomal L32p protein family D3H41_11325 PF02620 Large ribosomal RNA subunit accumulation protein YceD D3H41_11330 PF02545 Maf-like protein D3H41_11335 PF01479 S4 domain D3H41_11335 PF00849 RNA pseudouridylate synthase D3H41_11345 PF10150 Ribonuclease E/G family D3H41_11345 PF12111 Polyribonucleotide phosphorylase C terminal D3H41_11345 PF00575 S1 RNA binding domain D3H41_11355 PF01740 STAS domain D3H41_11355 PF00916 Sulfate permease family D3H41_11360 PF01451 Low molecular weight phosphotyrosine protein phosphatase D3H41_11365 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP D3H41_11365 PF12557 Cob(I)alamin adenosyltransferase N terminal D3H41_11375 PF00485 Phosphoribulokinase / Uridine kinase family D3H41_11380 PF10609 NUBPL iron-transfer P-loop NTPase D3H41_11385 PF09334 tRNA synthetases class I (M) D3H41_11385 PF01588 Putative tRNA binding domain D3H41_11405 PF07840 FadR C-terminal domain D3H41_11405 PF00392 Bacterial regulatory proteins, gntR family D3H41_11410 PF06450 Bacterial Na+/H+ antiporter B (NhaB) D3H41_11415 PF02600 Disulfide bond formation protein DsbB D3H41_11420 PF02810 SEC-C motif D3H41_11420 PF03695 Uncharacterised protein family (UPF0149) D3H41_11425 PF01207 Dihydrouridine synthase (Dus) D3H41_11430 PF00990 Diguanylate cyclase, GGDEF domain D3H41_11430 PF17158 Membrane-associated sensor, integral membrane domain D3H41_11435 PF00128 Alpha amylase, catalytic domain D3H41_11435 PF02903 Alpha amylase, N-terminal ig-like domain D3H41_11440 PF00005 ABC transporter D3H41_11445 PF02653 Branched-chain amino acid transport system / permease component D3H41_11455 PF04217 Protein of unknown function, DUF412 D3H41_11460 PF00871 Acetokinase family D3H41_11465 PF07085 DRTGG domain D3H41_11465 PF01515 Phosphate acetyl/butaryl transferase D3H41_11475 PF13409 Glutathione S-transferase, N-terminal domain D3H41_11480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_11480 PF00005 ABC transporter D3H41_11485 PF00005 ABC transporter D3H41_11485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_11490 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_11490 PF12911 N-terminal TM domain of oligopeptide transport permease C D3H41_11495 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_11500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3H41_11505 PF02391 MoaE protein D3H41_11510 PF02597 ThiS family D3H41_11515 PF01967 MoaC family D3H41_11520 PF00994 Probable molybdopterin binding domain D3H41_11525 PF04055 Radical SAM superfamily D3H41_11525 PF06463 Molybdenum Cofactor Synthesis C D3H41_11530 PF01933 Uncharacterised protein family UPF0052 D3H41_11535 PF01627 Hpt domain D3H41_11540 PF00072 Response regulator receiver domain D3H41_11540 PF00158 Sigma-54 interaction domain D3H41_11540 PF02954 Bacterial regulatory protein, Fis family D3H41_11545 PF00271 Helicase conserved C-terminal domain D3H41_11545 PF02151 UvrB/uvrC motif D3H41_11545 PF04851 Type III restriction enzyme, res subunit D3H41_11545 PF12344 Ultra-violet resistance protein B D3H41_11545 PF17757 UvrB interaction domain D3H41_11555 PF01228 Glycine radical D3H41_11555 PF02901 Pyruvate formate lyase-like D3H41_11560 PF02508 Rnf-Nqr subunit, membrane protein D3H41_11565 PF04060 Putative Fe-S cluster D3H41_11570 PF13375 RnfC Barrel sandwich hybrid domain D3H41_11570 PF12838 4Fe-4S dicluster domain D3H41_11570 PF10531 SLBB domain D3H41_11570 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D3H41_11575 PF03116 NQR2, RnfD, RnfE family D3H41_11580 PF04205 FMN-binding domain D3H41_11585 PF02508 Rnf-Nqr subunit, membrane protein D3H41_11590 PF00633 Helix-hairpin-helix motif D3H41_11590 PF10576 Iron-sulfur binding domain of endonuclease III D3H41_11590 PF00730 HhH-GPD superfamily base excision DNA repair protein D3H41_11595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3H41_11600 PF10952 Protein of unknown function (DUF2753) D3H41_11605 PF18393 MotY N-terminal domain D3H41_11605 PF00691 OmpA family D3H41_11615 PF00929 Exonuclease D3H41_11620 PF03553 Na+/H+ antiporter family D3H41_11620 PF13726 Na+-H+ antiporter family D3H41_11640 PF00462 Glutaredoxin D3H41_11645 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D3H41_11645 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D3H41_11660 PF00171 Aldehyde dehydrogenase family D3H41_11660 PF00465 Iron-containing alcohol dehydrogenase D3H41_11665 PF01914 MarC family integral membrane protein D3H41_11670 PF00027 Cyclic nucleotide-binding domain D3H41_11670 PF00520 Ion transport protein D3H41_11675 PF02774 Semialdehyde dehydrogenase, dimerisation domain D3H41_11675 PF01118 Semialdehyde dehydrogenase, NAD binding domain D3H41_11680 PF03553 Na+/H+ antiporter family D3H41_11695 PF04245 37-kD nucleoid-associated bacterial protein D3H41_11700 PF07208 Protein of unknown function (DUF1414) D3H41_11705 PF11893 Domain of unknown function (DUF3413) D3H41_11705 PF00884 Sulfatase D3H41_11715 PF00850 Histone deacetylase domain D3H41_11720 PF00106 short chain dehydrogenase D3H41_11730 PF01751 Toprim domain D3H41_11730 PF01131 DNA topoisomerase D3H41_11735 PF00881 Nitroreductase family D3H41_11745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D3H41_11745 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_11750 PF01343 Peptidase family S49 D3H41_11755 PF00710 Asparaginase, N-terminal D3H41_11755 PF17763 Glutaminase/Asparaginase C-terminal domain D3H41_11760 PF07023 Protein of unknown function (DUF1315) D3H41_11770 PF01641 SelR domain D3H41_11775 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D3H41_11775 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D3H41_11780 PF01263 Aldose 1-epimerase D3H41_11785 PF13426 PAS domain D3H41_11785 PF08447 PAS fold D3H41_11785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_11790 PF13847 Methyltransferase domain D3H41_11810 PF00245 Alkaline phosphatase D3H41_11820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3H41_11825 PF03992 Antibiotic biosynthesis monooxygenase D3H41_11830 PF00924 Mechanosensitive ion channel D3H41_11830 PF05552 Conserved TM helix D3H41_11835 PF03692 Putative zinc- or iron-chelating domain D3H41_11840 PF04226 Transglycosylase associated protein D3H41_11845 PF03692 Putative zinc- or iron-chelating domain D3H41_11850 PF00230 Major intrinsic protein D3H41_11855 PF13662 Toprim domain D3H41_11855 PF02132 RecR protein D3H41_11860 PF02575 YbaB/EbfC DNA-binding family D3H41_11865 PF12169 DNA polymerase III subunits gamma and tau domain III D3H41_11865 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding D3H41_11865 PF12170 DNA polymerase III tau subunit V interacting with alpha D3H41_11870 PF00156 Phosphoribosyl transferase domain D3H41_11875 PF04304 Protein of unknown function (DUF454) D3H41_11885 PF00072 Response regulator receiver domain D3H41_11890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_11890 PF03466 LysR substrate binding domain D3H41_11895 PF00156 Phosphoribosyl transferase domain D3H41_11900 PF02674 Colicin V production protein D3H41_11905 PF05036 Sporulation related domain D3H41_11910 PF08245 Mur ligase middle domain D3H41_11910 PF02875 Mur ligase family, glutamate ligase domain D3H41_11915 PF17848 Acetyl-coA carboxylase zinc finger domain D3H41_11915 PF01039 Carboxyl transferase domain D3H41_11925 PF01416 tRNA pseudouridine synthase D3H41_11935 PF01118 Semialdehyde dehydrogenase, NAD binding domain D3H41_11935 PF02774 Semialdehyde dehydrogenase, dimerisation domain D3H41_11940 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3H41_11940 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3H41_11940 PF11890 Domain of unknown function (DUF3410) D3H41_11950 PF02801 Beta-ketoacyl synthase, C-terminal domain D3H41_11950 PF00109 Beta-ketoacyl synthase, N-terminal domain D3H41_11955 PF01266 FAD dependent oxidoreductase D3H41_11955 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D3H41_11960 PF03358 NADPH-dependent FMN reductase D3H41_11970 PF08891 YfcL protein D3H41_11975 PF04315 Elongation factor P hydroxylase D3H41_11985 PF03458 UPF0126 domain D3H41_11990 PF01264 Chorismate synthase D3H41_11995 PF05175 Methyltransferase small domain D3H41_12000 PF01713 Smr domain D3H41_12005 PF00300 Histidine phosphatase superfamily (branch 1) D3H41_12010 PF00675 Insulinase (Peptidase family M16) D3H41_12010 PF16187 Middle or third domain of peptidase_M16 D3H41_12010 PF05193 Peptidase M16 inactive domain D3H41_12020 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D3H41_12020 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D3H41_12020 PF00378 Enoyl-CoA hydratase/isomerase D3H41_12025 PF02803 Thiolase, C-terminal domain D3H41_12025 PF00108 Thiolase, N-terminal domain D3H41_12035 PF08281 Sigma-70, region 4 D3H41_12035 PF04542 Sigma-70 region 2 D3H41_12045 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D3H41_12050 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D3H41_12055 PF04333 MlaA lipoprotein D3H41_12060 PF03918 Cytochrome C biogenesis protein D3H41_12065 PF03918 Cytochrome C biogenesis protein D3H41_12070 PF08534 Redoxin D3H41_12075 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D3H41_12075 PF01578 Cytochrome C assembly protein D3H41_12080 PF03100 CcmE D3H41_12085 PF04995 Heme exporter protein D (CcmD) D3H41_12090 PF01578 Cytochrome C assembly protein D3H41_12095 PF03379 CcmB protein D3H41_12100 PF00005 ABC transporter D3H41_12110 PF01584 CheW-like domain D3H41_12120 PF13614 AAA domain D3H41_12125 PF01339 CheB methylesterase D3H41_12125 PF00072 Response regulator receiver domain D3H41_12130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_12130 PF02895 Signal transducing histidine kinase, homodimeric domain D3H41_12130 PF07194 P2 response regulator binding domain D3H41_12130 PF01584 CheW-like domain D3H41_12130 PF01627 Hpt domain D3H41_12135 PF04344 Chemotaxis phosphatase, CheZ D3H41_12140 PF00072 Response regulator receiver domain D3H41_12145 PF04539 Sigma-70 region 3 D3H41_12145 PF04542 Sigma-70 region 2 D3H41_12145 PF04545 Sigma-70, region 4 D3H41_12150 PF10609 NUBPL iron-transfer P-loop NTPase D3H41_12155 PF00448 SRP54-type protein, GTPase domain D3H41_12160 PF00771 FHIPEP family D3H41_12165 PF01312 FlhB HrpN YscU SpaS Family D3H41_12170 PF01311 Bacterial export proteins, family 1 D3H41_12175 PF01313 Bacterial export proteins, family 3 D3H41_12180 PF00813 FliP family D3H41_12185 PF04347 Flagellar biosynthesis protein, FliO D3H41_12190 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D3H41_12195 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D3H41_12195 PF02154 Flagellar motor switch protein FliM D3H41_12220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3H41_12220 PF18269 T3SS EscN ATPase C-terminal domain D3H41_12230 PF14842 FliG N-terminal domain D3H41_12230 PF14841 FliG middle domain D3H41_12230 PF01706 FliG C-terminal domain D3H41_12235 PF08345 Flagellar M-ring protein C-terminal D3H41_12235 PF01514 Secretory protein of YscJ/FliF family D3H41_12240 PF02049 Flagellar hook-basal body complex protein FliE D3H41_12245 PF00072 Response regulator receiver domain D3H41_12245 PF00158 Sigma-54 interaction domain D3H41_12245 PF02954 Bacterial regulatory protein, Fis family D3H41_12250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_12250 PF00512 His Kinase A (phospho-acceptor) domain D3H41_12255 PF00158 Sigma-54 interaction domain D3H41_12255 PF00072 Response regulator receiver domain D3H41_12255 PF02954 Bacterial regulatory protein, Fis family D3H41_12260 PF02561 Flagellar protein FliS D3H41_12270 PF02465 Flagellar hook-associated protein 2 N-terminus D3H41_12270 PF07195 Flagellar hook-associated protein 2 C-terminus D3H41_12270 PF07196 Flagellin hook IN motif D3H41_12275 PF03646 FlaG protein D3H41_12280 PF07196 Flagellin hook IN motif D3H41_12280 PF00700 Bacterial flagellin C-terminal helical region D3H41_12280 PF00669 Bacterial flagellin N-terminal helical region D3H41_12285 PF00700 Bacterial flagellin C-terminal helical region D3H41_12285 PF07196 Flagellin hook IN motif D3H41_12285 PF00669 Bacterial flagellin N-terminal helical region D3H41_12295 PF07196 Flagellin hook IN motif D3H41_12295 PF00669 Bacterial flagellin N-terminal helical region D3H41_12295 PF00700 Bacterial flagellin C-terminal helical region D3H41_12300 PF04261 Dyp-type peroxidase family D3H41_12305 PF11143 Protein of unknown function (DUF2919) D3H41_12325 PF03960 ArsC family D3H41_12330 PF01546 Peptidase family M20/M25/M40 D3H41_12330 PF07687 Peptidase dimerisation domain D3H41_12350 PF00701 Dihydrodipicolinate synthetase family D3H41_12360 PF00578 AhpC/TSA family D3H41_12365 PF01594 AI-2E family transporter D3H41_12375 PF01435 Peptidase family M48 D3H41_12375 PF13181 Tetratricopeptide repeat D3H41_12380 PF03960 ArsC family D3H41_12385 PF03358 NADPH-dependent FMN reductase D3H41_12400 PF00860 Permease family D3H41_12410 PF02769 AIR synthase related protein, C-terminal domain D3H41_12410 PF00586 AIR synthase related protein, N-terminal domain D3H41_12415 PF00551 Formyl transferase D3H41_12420 PF13230 Glutamine amidotransferases class-II D3H41_12425 PF13580 SIS domain D3H41_12430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3H41_12430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3H41_12430 PF02770 Acyl-CoA dehydrogenase, middle domain D3H41_12430 PF09317 Domain of unknown function (DUF1974) D3H41_12435 PF01740 STAS domain D3H41_12435 PF00916 Sulfate permease family D3H41_12460 PF00929 Exonuclease D3H41_12465 PF00075 RNase H D3H41_12470 PF08241 Methyltransferase domain D3H41_12475 PF00753 Metallo-beta-lactamase superfamily D3H41_12475 PF16123 Hydroxyacylglutathione hydrolase C-terminus D3H41_12480 PF01476 LysM domain D3H41_12480 PF01464 Transglycosylase SLT domain D3H41_12490 PF03372 Endonuclease/Exonuclease/phosphatase family D3H41_12495 PF00543 Nitrogen regulatory protein P-II D3H41_12500 PF00034 Cytochrome c D3H41_12505 PF01171 PP-loop family D3H41_12505 PF09179 TilS substrate binding domain D3H41_12505 PF11734 TilS substrate C-terminal domain D3H41_12510 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D3H41_12515 PF14579 Helix-hairpin-helix motif D3H41_12515 PF07733 Bacterial DNA polymerase III alpha NTPase domain D3H41_12515 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D3H41_12515 PF01336 OB-fold nucleic acid binding domain D3H41_12515 PF02811 PHP domain D3H41_12520 PF01351 Ribonuclease HII D3H41_12525 PF02684 Lipid-A-disaccharide synthetase D3H41_12530 PF00132 Bacterial transferase hexapeptide (six repeats) D3H41_12530 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D3H41_12535 PF07977 FabA-like domain D3H41_12540 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D3H41_12540 PF00132 Bacterial transferase hexapeptide (six repeats) D3H41_12545 PF03938 Outer membrane protein (OmpH-like) D3H41_12550 PF07244 Surface antigen variable number repeat D3H41_12550 PF01103 Surface antigen D3H41_12555 PF02163 Peptidase family M50 D3H41_12555 PF17820 PDZ domain D3H41_12560 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D3H41_12560 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D3H41_12560 PF13288 DXP reductoisomerase C-terminal domain D3H41_12570 PF01255 Putative undecaprenyl diphosphate synthase D3H41_12575 PF01765 Ribosome recycling factor D3H41_12580 PF00696 Amino acid kinase family D3H41_12585 PF00889 Elongation factor TS D3H41_12590 PF00318 Ribosomal protein S2 D3H41_12595 PF00557 Metallopeptidase family M24 D3H41_12600 PF01842 ACT domain D3H41_12600 PF08335 GlnD PII-uridylyltransferase D3H41_12600 PF01966 HD domain D3H41_12600 PF01909 Nucleotidyltransferase domain D3H41_12605 PF11944 Protein of unknown function (DUF3461) D3H41_12610 PF00849 RNA pseudouridylate synthase D3H41_12615 PF04287 tRNA pseudouridine synthase C D3H41_12645 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 D3H41_12650 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D3H41_12650 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D3H41_12655 PF01370 NAD dependent epimerase/dehydratase family D3H41_12680 PF03806 AbgT putative transporter family D3H41_12685 PF00444 Ribosomal protein L36 D3H41_12690 PF01197 Ribosomal protein L31 D3H41_12695 PF18389 TrmO C-terminal domain D3H41_12695 PF01980 tRNA-methyltransferase O D3H41_12700 PF03129 Anticodon binding domain D3H41_12700 PF04073 Aminoacyl-tRNA editing domain D3H41_12700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3H41_12710 PF06786 Uncharacterised protein family (UPF0253) D3H41_12720 PF00209 Sodium:neurotransmitter symporter family D3H41_12725 PF06483 Chitinase C D3H41_12725 PF00704 Glycosyl hydrolases family 18 D3H41_12735 PF01272 Transcription elongation factor, GreA/GreB, C-term D3H41_12735 PF03449 Transcription elongation factor, N-terminal D3H41_12740 PF16124 RecQ zinc-binding D3H41_12740 PF09382 RQC domain D3H41_12740 PF00570 HRDC domain D3H41_12740 PF00270 DEAD/DEAH box helicase D3H41_12740 PF00271 Helicase conserved C-terminal domain D3H41_12745 PF11799 impB/mucB/samB family C-terminal domain D3H41_12745 PF00817 impB/mucB/samB family D3H41_12745 PF11798 IMS family HHH motif D3H41_12755 PF00072 Response regulator receiver domain D3H41_12755 PF00990 Diguanylate cyclase, GGDEF domain D3H41_12765 PF02424 ApbE family D3H41_12770 PF00175 Oxidoreductase NAD-binding domain D3H41_12770 PF00111 2Fe-2S iron-sulfur cluster binding domain D3H41_12770 PF00970 Oxidoreductase FAD-binding domain D3H41_12775 PF02508 Rnf-Nqr subunit, membrane protein D3H41_12780 PF02508 Rnf-Nqr subunit, membrane protein D3H41_12785 PF04205 FMN-binding domain D3H41_12790 PF03116 NQR2, RnfD, RnfE family D3H41_12795 PF11973 NQRA C-terminal domain D3H41_12795 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) D3H41_12800 PF01722 BolA-like protein D3H41_12805 PF05175 Methyltransferase small domain D3H41_12810 PF03923 Uncharacterized lipoprotein D3H41_12810 PF08139 Prokaryotic membrane lipoprotein lipid attachment site D3H41_12815 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D3H41_12820 PF07690 Major Facilitator Superfamily D3H41_12830 PF04545 Sigma-70, region 4 D3H41_12830 PF04542 Sigma-70 region 2 D3H41_12850 PF03502 Nucleoside-specific channel-forming protein, Tsx D3H41_12855 PF02558 Ketopantoate reductase PanE/ApbA D3H41_12855 PF08546 Ketopantoate reductase PanE/ApbA C terminal D3H41_12860 PF01965 DJ-1/PfpI family D3H41_12865 PF00266 Aminotransferase class-V D3H41_12870 PF17158 Membrane-associated sensor, integral membrane domain D3H41_12870 PF00990 Diguanylate cyclase, GGDEF domain D3H41_12875 PF02657 Fe-S metabolism associated domain D3H41_12880 PF00899 ThiF family D3H41_12885 PF03562 MltA specific insert domain D3H41_12885 PF06725 3D domain D3H41_12900 PF00696 Amino acid kinase family D3H41_12900 PF00583 Acetyltransferase (GNAT) family D3H41_12920 PF13538 UvrD-like helicase C-terminal domain D3H41_12925 PF13361 UvrD-like helicase C-terminal domain D3H41_12925 PF00580 UvrD/REP helicase N-terminal domain D3H41_12925 PF12705 PD-(D/E)XK nuclease superfamily D3H41_12930 PF17946 RecC C-terminal domain D3H41_12935 PF00884 Sulfatase D3H41_12935 PF11893 Domain of unknown function (DUF3413) D3H41_12945 PF03466 LysR substrate binding domain D3H41_12945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_12950 PF07130 YebG protein D3H41_12965 PF14602 Hexapeptide repeat of succinyl-transferase D3H41_12965 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle D3H41_12970 PF03009 Glycerophosphoryl diester phosphodiesterase family D3H41_12975 PF07690 Major Facilitator Superfamily D3H41_12985 PF00230 Major intrinsic protein D3H41_12990 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D3H41_12990 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D3H41_12995 PF08220 DeoR-like helix-turn-helix domain D3H41_12995 PF00455 DeoR C terminal sensor domain D3H41_13000 PF01266 FAD dependent oxidoreductase D3H41_13000 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D3H41_13005 PF01544 CorA-like Mg2+ transporter protein D3H41_13025 PF00356 Bacterial regulatory proteins, lacI family D3H41_13030 PF03466 LysR substrate binding domain D3H41_13030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_13060 PF00437 Type II/IV secretion system protein D3H41_13090 PF00263 Bacterial type II and III secretion system protein D3H41_13090 PF04972 BON domain D3H41_13090 PF13629 Pilus formation protein N terminal region D3H41_13115 PF02805 Metal binding domain of Ada D3H41_13115 PF12833 Helix-turn-helix domain D3H41_13120 PF00501 AMP-binding enzyme D3H41_13130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_13130 PF03466 LysR substrate binding domain D3H41_13135 PF03144 Elongation factor Tu domain 2 D3H41_13135 PF00009 Elongation factor Tu GTP binding domain D3H41_13135 PF03764 Elongation factor G, domain IV D3H41_13135 PF14492 Elongation Factor G, domain II D3H41_13135 PF00679 Elongation factor G C-terminus D3H41_13140 PF18073 Rubredoxin metal binding domain D3H41_13150 PF18429 Domain of unknown function (DUF5609) D3H41_13160 PF01048 Phosphorylase superfamily D3H41_13165 PF01676 Metalloenzyme superfamily D3H41_13170 PF02885 Glycosyl transferase family, helical bundle domain D3H41_13170 PF00591 Glycosyl transferase family, a/b domain D3H41_13170 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain D3H41_13175 PF01791 DeoC/LacD family aldolase D3H41_13180 PF07662 Na+ dependent nucleoside transporter C-terminus D3H41_13180 PF07670 Nucleoside recognition D3H41_13180 PF01773 Na+ dependent nucleoside transporter N-terminus D3H41_13185 PF01026 TatD related DNase D3H41_13195 PF03144 Elongation factor Tu domain 2 D3H41_13195 PF00009 Elongation factor Tu GTP binding domain D3H41_13195 PF16658 Class II release factor RF3, C-terminal domain D3H41_13215 PF13508 Acetyltransferase (GNAT) domain D3H41_13230 PF03707 Bacterial signalling protein N terminal repeat D3H41_13230 PF00990 Diguanylate cyclase, GGDEF domain D3H41_13230 PF00563 EAL domain D3H41_13245 PF01554 MatE D3H41_13255 PF07719 Tetratricopeptide repeat D3H41_13255 PF13181 Tetratricopeptide repeat D3H41_13260 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D3H41_13260 PF01138 3' exoribonuclease family, domain 1 D3H41_13260 PF00013 KH domain D3H41_13260 PF03725 3' exoribonuclease family, domain 2 D3H41_13260 PF00575 S1 RNA binding domain D3H41_13265 PF00312 Ribosomal protein S15 D3H41_13270 PF16198 tRNA pseudouridylate synthase B C-terminal domain D3H41_13270 PF09157 Pseudouridine synthase II TruB, C-terminal D3H41_13270 PF01509 TruB family pseudouridylate synthase (N terminal domain) D3H41_13275 PF02033 Ribosome-binding factor A D3H41_13280 PF04760 Translation initiation factor IF-2, N-terminal region D3H41_13280 PF00009 Elongation factor Tu GTP binding domain D3H41_13280 PF11987 Translation-initiation factor 2 D3H41_13280 PF08364 Bacterial translation initiation factor IF-2 associated region D3H41_13285 PF00575 S1 RNA binding domain D3H41_13285 PF08529 NusA N-terminal domain D3H41_13285 PF13184 NusA-like KH domain D3H41_13290 PF17384 RimP C-terminal SH3 domain D3H41_13290 PF02576 RimP N-terminal domain D3H41_13305 PF03840 Preprotein translocase SecG subunit D3H41_13315 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3H41_13315 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3H41_13315 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3H41_13315 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3H41_13320 PF00809 Pterin binding enzyme D3H41_13325 PF01434 Peptidase family M41 D3H41_13325 PF17862 AAA+ lid domain D3H41_13325 PF00004 ATPase family associated with various cellular activities (AAA) D3H41_13325 PF06480 FtsH Extracellular D3H41_13330 PF01728 FtsJ-like methyltransferase D3H41_13335 PF01985 CRS1 / YhbY (CRM) domain D3H41_13340 PF03449 Transcription elongation factor, N-terminal D3H41_13340 PF01272 Transcription elongation factor, GreA/GreB, C-term D3H41_13345 PF13609 Gram-negative porin D3H41_13350 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D3H41_13360 PF00579 tRNA synthetases class I (W and Y) D3H41_13365 PF01476 LysM domain D3H41_13365 PF08525 Opacity-associated protein A N-terminal motif D3H41_13365 PF01551 Peptidase family M23 D3H41_13370 PF00873 AcrB/AcrD/AcrF family D3H41_13380 PF01521 Iron-sulphur cluster biosynthesis D3H41_13385 PF00202 Aminotransferase class-III D3H41_13390 PF01594 AI-2E family transporter D3H41_13395 PF08468 Methyltransferase small domain N-terminal D3H41_13395 PF05175 Methyltransferase small domain D3H41_13400 PF00512 His Kinase A (phospho-acceptor) domain D3H41_13400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_13400 PF09308 LuxQ, periplasmic D3H41_13400 PF00072 Response regulator receiver domain D3H41_13405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3H41_13410 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_13415 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_13415 PF12911 N-terminal TM domain of oligopeptide transport permease C D3H41_13420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_13420 PF00005 ABC transporter D3H41_13425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_13425 PF00005 ABC transporter D3H41_13435 PF01869 BadF/BadG/BcrA/BcrD ATPase family D3H41_13440 PF00728 Glycosyl hydrolase family 20, catalytic domain D3H41_13440 PF02838 Glycosyl hydrolase family 20, domain 2 D3H41_13445 PF06165 Glycosyltransferase family 36 D3H41_13445 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain D3H41_13450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3H41_13450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3H41_13450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3H41_13450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3H41_13455 PF08402 TOBE domain D3H41_13455 PF00005 ABC transporter D3H41_13465 PF13416 Bacterial extracellular solute-binding protein D3H41_13470 PF00909 Ammonium Transporter Family D3H41_13475 PF00543 Nitrogen regulatory protein P-II D3H41_13480 PF06062 Uncharacterised protein family (UPF0231) D3H41_13485 PF00330 Aconitase family (aconitate hydratase) D3H41_13485 PF06434 Aconitate hydratase 2 N-terminus D3H41_13485 PF11791 Aconitate B N-terminal domain D3H41_13490 PF01734 Patatin-like phospholipase D3H41_13495 PF14814 Bifunctional transglycosylase second domain D3H41_13495 PF00905 Penicillin binding protein transpeptidase domain D3H41_13495 PF00912 Transglycosylase D3H41_13500 PF00270 DEAD/DEAH box helicase D3H41_13500 PF04408 Helicase associated domain (HA2) D3H41_13500 PF00271 Helicase conserved C-terminal domain D3H41_13500 PF08482 ATP-dependent helicase C-terminal D3H41_13505 PF03749 Sugar fermentation stimulation protein RE domain D3H41_13505 PF17746 SfsA N-terminal OB domain D3H41_13510 PF01258 Prokaryotic dksA/traR C4-type zinc finger D3H41_13515 PF00749 tRNA synthetases class I (E and Q), catalytic domain D3H41_13520 PF01743 Poly A polymerase head domain D3H41_13520 PF12627 Probable RNA and SrmB- binding site of polymerase A D3H41_13520 PF12626 Polymerase A arginine-rich C-terminus D3H41_13525 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D3H41_13530 PF02548 Ketopantoate hydroxymethyltransferase D3H41_13535 PF02569 Pantoate-beta-alanine ligase D3H41_13540 PF03279 Bacterial lipid A biosynthesis acyltransferase D3H41_13550 PF01061 ABC-2 type transporter D3H41_13555 PF00005 ABC transporter D3H41_13560 PF01740 STAS domain D3H41_13560 PF00916 Sulfate permease family D3H41_13565 PF00484 Carbonic anhydrase D3H41_13570 PF00156 Phosphoribosyl transferase domain D3H41_13575 PF00440 Bacterial regulatory proteins, tetR family D3H41_13580 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_13580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3H41_13585 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D3H41_13585 PF02817 e3 binding domain D3H41_13585 PF00364 Biotin-requiring enzyme D3H41_13590 PF17831 Pyruvate dehydrogenase E1 component middle domain D3H41_13590 PF00456 Transketolase, thiamine diphosphate binding domain D3H41_13595 PF00392 Bacterial regulatory proteins, gntR family D3H41_13595 PF07729 FCD domain D3H41_13600 PF01510 N-acetylmuramoyl-L-alanine amidase D3H41_13605 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D3H41_13605 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D3H41_13610 PF00114 Pilin (bacterial filament) D3H41_13610 PF07963 Prokaryotic N-terminal methylation motif D3H41_13615 PF00437 Type II/IV secretion system protein D3H41_13615 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D3H41_13620 PF00482 Type II secretion system (T2SS), protein F D3H41_13625 PF06750 Bacterial Peptidase A24 N-terminal domain D3H41_13625 PF01478 Type IV leader peptidase family D3H41_13630 PF01121 Dephospho-CoA kinase D3H41_13635 PF07072 Cell division protein D3H41_13640 PF03884 DNA gyrase inhibitor YacG D3H41_13650 PF01245 Ribosomal protein L19 D3H41_13655 PF01746 tRNA (Guanine-1)-methyltransferase D3H41_13660 PF05239 PRC-barrel domain D3H41_13660 PF01782 RimM N-terminal domain D3H41_13665 PF00886 Ribosomal protein S16 D3H41_13670 PF00448 SRP54-type protein, GTPase domain D3H41_13670 PF02881 SRP54-type protein, helical bundle domain D3H41_13670 PF02978 Signal peptide binding domain D3H41_13675 PF01578 Cytochrome C assembly protein D3H41_13680 PF01595 Cyclin M transmembrane N-terminal domain D3H41_13680 PF00571 CBS domain D3H41_13680 PF03471 Transporter associated domain D3H41_13685 PF02664 S-Ribosylhomocysteinase (LuxS) D3H41_13695 PF04262 Glutamate-cysteine ligase D3H41_13700 PF05193 Peptidase M16 inactive domain D3H41_13700 PF00675 Insulinase (Peptidase family M16) D3H41_13705 PF09335 SNARE associated Golgi protein D3H41_13715 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit D3H41_13720 PF02436 Conserved carboxylase domain D3H41_13720 PF00682 HMGL-like D3H41_13720 PF00364 Biotin-requiring enzyme D3H41_13725 PF04277 Oxaloacetate decarboxylase, gamma chain D3H41_13780 PF02599 Global regulator protein family D3H41_13785 PF00696 Amino acid kinase family D3H41_13785 PF13840 ACT domain D3H41_13785 PF01842 ACT domain D3H41_13790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D3H41_13790 PF01411 tRNA synthetases class II (A) D3H41_13790 PF02272 DHHA1 domain D3H41_13795 PF02631 RecX family D3H41_13805 PF00154 recA bacterial DNA recombination protein D3H41_13810 PF02464 Competence-damaged protein D3H41_13815 PF05188 MutS domain II D3H41_13815 PF05190 MutS family domain IV D3H41_13815 PF01624 MutS domain I D3H41_13815 PF00488 MutS domain V D3H41_13815 PF05192 MutS domain III D3H41_13820 PF04542 Sigma-70 region 2 D3H41_13820 PF04545 Sigma-70, region 4 D3H41_13820 PF04539 Sigma-70 region 3 D3H41_13820 PF00140 Sigma-70 factor, region 1.2 D3H41_13825 PF01551 Peptidase family M23 D3H41_13825 PF01476 LysM domain D3H41_13835 PF01975 Survival protein SurE D3H41_13840 PF01142 tRNA pseudouridine synthase D (TruD) D3H41_13845 PF02542 YgbB family D3H41_13850 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D3H41_13855 PF04977 Septum formation initiator D3H41_13860 PF00113 Enolase, C-terminal TIM barrel domain D3H41_13860 PF03952 Enolase, N-terminal domain D3H41_13865 PF00117 Glutamine amidotransferase class-I D3H41_13865 PF06418 CTP synthase N-terminus D3H41_13870 PF03819 MazG nucleotide pyrophosphohydrolase domain D3H41_13875 PF02824 TGS domain D3H41_13875 PF04607 Region found in RelA / SpoT proteins D3H41_13875 PF13291 ACT domain D3H41_13885 PF01938 TRAM domain D3H41_13885 PF05958 tRNA (Uracil-5-)-methyltransferase D3H41_13895 PF01627 Hpt domain D3H41_13895 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3H41_13895 PF00512 His Kinase A (phospho-acceptor) domain D3H41_13895 PF00072 Response regulator receiver domain D3H41_13895 PF00672 HAMP domain D3H41_13895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_13900 PF01648 4'-phosphopantetheinyl transferase superfamily D3H41_13905 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ D3H41_13910 PF02565 Recombination protein O C terminal D3H41_13910 PF11967 Recombination protein O N terminal D3H41_13915 PF01926 50S ribosome-binding GTPase D3H41_13915 PF07650 KH domain D3H41_13920 PF14622 Ribonuclease-III-like D3H41_13920 PF00035 Double-stranded RNA binding motif D3H41_13925 PF10502 Signal peptidase, peptidase S26 D3H41_13930 PF00009 Elongation factor Tu GTP binding domain D3H41_13930 PF06421 GTP-binding protein LepA C-terminus D3H41_13930 PF00679 Elongation factor G C-terminus D3H41_13930 PF03144 Elongation factor Tu domain 2 D3H41_13940 PF17188 MucB/RseB C-terminal domain D3H41_13940 PF03888 MucB/RseB N-terminal domain D3H41_13945 PF03872 Anti sigma-E protein RseA, N-terminal domain D3H41_13945 PF03873 Anti sigma-E protein RseA, C-terminal domain D3H41_13950 PF08281 Sigma-70, region 4 D3H41_13950 PF04542 Sigma-70 region 2 D3H41_13960 PF00890 FAD binding domain D3H41_13960 PF02910 Fumarate reductase flavoprotein C-term D3H41_13970 PF03937 Flavinator of succinate dehydrogenase D3H41_13990 PF01494 FAD binding domain D3H41_13995 PF01494 FAD binding domain D3H41_14000 PF03695 Uncharacterised protein family (UPF0149) D3H41_14010 PF05164 Cell division protein ZapA D3H41_14020 PF01812 5-formyltetrahydrofolate cyclo-ligase family D3H41_14025 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D3H41_14030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3H41_14030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3H41_14030 PF01842 ACT domain D3H41_14035 PF04402 Protein of unknown function (DUF541) D3H41_14040 PF03466 LysR substrate binding domain D3H41_14040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_14045 PF01810 LysE type translocator D3H41_14055 PF00924 Mechanosensitive ion channel D3H41_14055 PF05552 Conserved TM helix D3H41_14060 PF01116 Fructose-bisphosphate aldolase class-II D3H41_14065 PF00162 Phosphoglycerate kinase D3H41_14070 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D3H41_14070 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D3H41_14075 PF07715 TonB-dependent Receptor Plug Domain D3H41_14075 PF00593 TonB dependent receptor D3H41_14080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_14080 PF03466 LysR substrate binding domain D3H41_14085 PF02780 Transketolase, C-terminal domain D3H41_14085 PF00456 Transketolase, thiamine diphosphate binding domain D3H41_14085 PF02779 Transketolase, pyrimidine binding domain D3H41_14095 PF02773 S-adenosylmethionine synthetase, C-terminal domain D3H41_14095 PF02772 S-adenosylmethionine synthetase, central domain D3H41_14095 PF00438 S-adenosylmethionine synthetase, N-terminal domain D3H41_14105 PF10263 SprT-like family D3H41_14105 PF17283 SprT-like zinc ribbon domain D3H41_14110 PF04231 Endonuclease I D3H41_14115 PF04452 RNA methyltransferase D3H41_14120 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain D3H41_14120 PF02951 Prokaryotic glutathione synthetase, N-terminal domain D3H41_14125 PF02622 Uncharacterized ACR, COG1678 D3H41_14130 PF03652 Holliday junction resolvase D3H41_14135 PF00437 Type II/IV secretion system protein D3H41_14140 PF00437 Type II/IV secretion system protein D3H41_14145 PF01168 Alanine racemase, N-terminal domain D3H41_14150 PF03807 NADP oxidoreductase coenzyme F420-dependent D3H41_14150 PF14748 Pyrroline-5-carboxylate reductase dimerisation D3H41_14155 PF02325 YGGT family D3H41_14160 PF02594 Uncharacterised ACR, YggU family COG1872 D3H41_14170 PF01725 Ham1 family D3H41_14175 PF06969 HemN C-terminal domain D3H41_14175 PF04055 Radical SAM superfamily D3H41_14180 PF04960 Glutaminase D3H41_14185 PF02086 D12 class N6 adenine-specific DNA methyltransferase D3H41_14190 PF02390 Putative methyltransferase D3H41_14195 PF00730 HhH-GPD superfamily base excision DNA repair protein D3H41_14195 PF00633 Helix-hairpin-helix motif D3H41_14195 PF14815 NUDIX domain D3H41_14200 PF04362 Bacterial Fe(2+) trafficking D3H41_14205 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain D3H41_14205 PF01464 Transglycosylase SLT domain D3H41_14245 PF17200 Single Cache domain 2 D3H41_14245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_14245 PF00672 HAMP domain D3H41_14280 PF00171 Aldehyde dehydrogenase family D3H41_14335 PF04794 YdjC-like protein D3H41_14340 PF11975 Family 4 glycosyl hydrolase C-terminal domain D3H41_14340 PF02056 Family 4 glycosyl hydrolase D3H41_14345 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit D3H41_14350 PF02378 Phosphotransferase system, EIIC D3H41_14355 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D3H41_14360 PF01522 Polysaccharide deacetylase D3H41_14375 PF10011 Predicted membrane protein (DUF2254) D3H41_14385 PF03739 Lipopolysaccharide export system permease LptF/LptG D3H41_14390 PF03739 Lipopolysaccharide export system permease LptF/LptG D3H41_14395 PF00883 Cytosol aminopeptidase family, catalytic domain D3H41_14395 PF02789 Cytosol aminopeptidase family, N-terminal domain D3H41_14400 PF04364 DNA polymerase III chi subunit, HolC D3H41_14405 PF10458 Valyl tRNA synthetase tRNA binding arm D3H41_14405 PF00133 tRNA synthetases class I (I, L, M and V) D3H41_14405 PF08264 Anticodon-binding domain of tRNA D3H41_14415 PF00583 Acetyltransferase (GNAT) family D3H41_14425 PF06877 Regulator of ribonuclease activity B D3H41_14435 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D3H41_14435 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D3H41_14445 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D3H41_14445 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D3H41_14450 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain D3H41_14450 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain D3H41_14455 PF01042 Endoribonuclease L-PSP D3H41_14460 PF01553 Acyltransferase D3H41_14465 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D3H41_14470 PF01722 BolA-like protein D3H41_14480 PF05494 MlaC protein D3H41_14485 PF02470 MlaD protein D3H41_14490 PF02405 Permease MlaE D3H41_14495 PF00005 ABC transporter D3H41_14500 PF01699 Sodium/calcium exchanger protein D3H41_14505 PF00571 CBS domain D3H41_14505 PF01380 SIS domain D3H41_14515 PF03968 OstA-like protein D3H41_14520 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3H41_14520 PF00005 ABC transporter D3H41_14525 PF04552 Sigma-54, DNA binding domain D3H41_14525 PF04963 Sigma-54 factor, core binding domain D3H41_14525 PF00309 Sigma-54 factor, Activator interacting domain (AID) D3H41_14530 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D3H41_14535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D3H41_14540 PF03668 P-loop ATPase protein family D3H41_14545 PF00381 PTS HPr component phosphorylation site D3H41_14550 PF03448 MgtE intracellular N domain D3H41_14550 PF00571 CBS domain D3H41_14550 PF01769 Divalent cation transporter D3H41_14555 PF01523 Putative modulator of DNA gyrase D3H41_14560 PF04751 Protein of unknown function (DUF615) D3H41_14565 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3H41_14565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3H41_14570 PF00849 RNA pseudouridylate synthase D3H41_14580 PF12137 RNA polymerase recycling family C-terminal D3H41_14580 PF00176 SNF2 family N-terminal domain D3H41_14580 PF18337 RapA N-terminal Tudor like domain D3H41_14580 PF00271 Helicase conserved C-terminal domain D3H41_14580 PF18339 RapA N-terminal Tudor like domain 1 D3H41_14585 PF02562 PhoH-like protein D3H41_14585 PF13638 PIN domain D3H41_14590 PF01523 Putative modulator of DNA gyrase D3H41_14595 PF00795 Carbon-nitrogen hydrolase D3H41_14600 PF13116 Protein of unknown function D3H41_14600 PF13502 AsmA-like C-terminal region D3H41_14605 PF10150 Ribonuclease E/G family D3H41_14605 PF00575 S1 RNA binding domain D3H41_14610 PF02545 Maf-like protein D3H41_14615 PF04093 rod shape-determining protein MreD D3H41_14620 PF04085 rod shape-determining protein MreC D3H41_14660 PF07963 Prokaryotic N-terminal methylation motif D3H41_14660 PF00114 Pilin (bacterial filament) D3H41_14670 PF00482 Type II secretion system (T2SS), protein F D3H41_14675 PF00437 Type II/IV secretion system protein D3H41_14685 PF13401 AAA domain D3H41_14685 PF01471 Putative peptidoglycan binding domain D3H41_14690 PF00263 Bacterial type II and III secretion system protein D3H41_14690 PF03958 Bacterial type II/III secretion system short domain D3H41_14710 PF00563 EAL domain D3H41_14710 PF00990 Diguanylate cyclase, GGDEF domain D3H41_14710 PF17157 Gammaproteobacterial periplasmic sensor domain D3H41_14715 PF00436 Single-strand binding protein family D3H41_14720 PF00196 Bacterial regulatory proteins, luxR family D3H41_14725 PF00483 Nucleotidyl transferase D3H41_14730 PF17760 UvrA interaction domain D3H41_14730 PF17755 UvrA DNA-binding domain D3H41_14730 PF00005 ABC transporter D3H41_14740 PF00266 Aminotransferase class-V D3H41_14750 PF01842 ACT domain D3H41_14750 PF00696 Amino acid kinase family D3H41_14755 PF00809 Pterin binding enzyme D3H41_14755 PF02965 Vitamin B12 dependent methionine synthase, activation domain D3H41_14755 PF02310 B12 binding domain D3H41_14755 PF02607 B12 binding domain D3H41_14755 PF02574 Homocysteine S-methyltransferase D3H41_14760 PF00999 Sodium/hydrogen exchanger family D3H41_14820 PF01507 Phosphoadenosine phosphosulfate reductase family D3H41_14825 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D3H41_14825 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D3H41_14830 PF00667 FAD binding domain D3H41_14830 PF00175 Oxidoreductase NAD-binding domain D3H41_14830 PF00258 Flavodoxin D3H41_14850 PF01207 Dihydrouridine synthase (Dus) D3H41_14855 PF01475 Ferric uptake regulator family D3H41_14865 PF00342 Phosphoglucose isomerase D3H41_14870 PF01894 Uncharacterised protein family UPF0047 D3H41_14875 PF00842 Alanine racemase, C-terminal domain D3H41_14875 PF01168 Alanine racemase, N-terminal domain D3H41_14880 PF00772 DnaB-like helicase N terminal domain D3H41_14880 PF03796 DnaB-like helicase C terminal domain D3H41_14890 PF01281 Ribosomal protein L9, N-terminal domain D3H41_14890 PF03948 Ribosomal protein L9, C-terminal domain D3H41_14895 PF01084 Ribosomal protein S18 D3H41_14900 PF00436 Single-strand binding protein family D3H41_14905 PF01250 Ribosomal protein S6 D3H41_14910 PF00834 Ribulose-phosphate 3 epimerase family D3H41_14915 PF02086 D12 class N6 adenine-specific DNA methyltransferase D3H41_14925 PF01761 3-dehydroquinate synthase D3H41_14930 PF01202 Shikimate kinase D3H41_14935 PF07660 Secretin and TonB N terminus short domain D3H41_14935 PF11741 AMIN domain D3H41_14935 PF03958 Bacterial type II/III secretion system short domain D3H41_14935 PF00263 Bacterial type II and III secretion system protein D3H41_14960 PF00912 Transglycosylase D3H41_14960 PF17092 Penicillin-binding protein OB-like domain D3H41_14960 PF00905 Penicillin binding protein transpeptidase domain D3H41_14965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_14965 PF03466 LysR substrate binding domain D3H41_14970 PF00462 Glutaredoxin D3H41_14970 PF08534 Redoxin D3H41_14975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3H41_14975 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_14985 PF00583 Acetyltransferase (GNAT) family D3H41_14985 PF14698 Argininosuccinate lyase C-terminal D3H41_14985 PF00206 Lyase D3H41_14990 PF00764 Arginosuccinate synthase D3H41_14995 PF00696 Amino acid kinase family D3H41_15000 PF02774 Semialdehyde dehydrogenase, dimerisation domain D3H41_15000 PF01118 Semialdehyde dehydrogenase, NAD binding domain D3H41_15005 PF07687 Peptidase dimerisation domain D3H41_15005 PF01546 Peptidase family M20/M25/M40 D3H41_15010 PF00311 Phosphoenolpyruvate carboxylase D3H41_15020 PF02219 Methylenetetrahydrofolate reductase D3H41_15025 PF03447 Homoserine dehydrogenase, NAD binding domain D3H41_15025 PF00742 Homoserine dehydrogenase D3H41_15025 PF00696 Amino acid kinase family D3H41_15030 PF01053 Cys/Met metabolism PLP-dependent enzyme D3H41_15040 PF03949 Malic enzyme, NAD binding domain D3H41_15040 PF00390 Malic enzyme, N-terminal domain D3H41_15045 PF00210 Ferritin-like domain D3H41_15050 PF04324 BFD-like [2Fe-2S] binding domain D3H41_15055 PF03144 Elongation factor Tu domain 2 D3H41_15055 PF03143 Elongation factor Tu C-terminal domain D3H41_15055 PF00009 Elongation factor Tu GTP binding domain D3H41_15060 PF00009 Elongation factor Tu GTP binding domain D3H41_15060 PF03764 Elongation factor G, domain IV D3H41_15060 PF14492 Elongation Factor G, domain II D3H41_15060 PF03144 Elongation factor Tu domain 2 D3H41_15060 PF00679 Elongation factor G C-terminus D3H41_15065 PF00177 Ribosomal protein S7p/S5e D3H41_15070 PF00164 Ribosomal protein S12/S23 D3H41_15075 PF04077 DsrH like protein D3H41_15080 PF02635 DsrE/DsrF-like family D3H41_15085 PF02635 DsrE/DsrF-like family D3H41_15090 PF13309 HTH domain D3H41_15090 PF08348 YheO-like PAS domain D3H41_15095 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D3H41_15095 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D3H41_15105 PF04102 SlyX D3H41_15110 PF01112 Asparaginase D3H41_15120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D3H41_15130 PF00999 Sodium/hydrogen exchanger family D3H41_15130 PF02254 TrkA-N domain D3H41_15135 PF02525 Flavodoxin-like fold D3H41_15140 PF00005 ABC transporter D3H41_15140 PF12848 ABC transporter D3H41_15150 PF00561 alpha/beta hydrolase fold D3H41_15155 PF06794 Uncharacterised protein family (UPF0270) D3H41_15160 PF00485 Phosphoribulokinase / Uridine kinase family D3H41_15165 PF00027 Cyclic nucleotide-binding domain D3H41_15165 PF13545 Crp-like helix-turn-helix domain D3H41_15175 PF00171 Aldehyde dehydrogenase family D3H41_15180 PF04958 Arginine N-succinyltransferase beta subunit D3H41_15185 PF00202 Aminotransferase class-III D3H41_15190 PF00117 Glutamine amidotransferase class-I D3H41_15205 PF00579 tRNA synthetases class I (W and Y) D3H41_15210 PF13419 Haloacid dehalogenase-like hydrolase D3H41_15215 PF08032 RNA 2'-O ribose methyltransferase substrate binding D3H41_15215 PF00588 SpoU rRNA Methylase family D3H41_15220 PF00575 S1 RNA binding domain D3H41_15220 PF00773 RNB domain D3H41_15220 PF08206 Ribonuclease B OB domain D3H41_15220 PF17876 Cold shock domain D3H41_15220 PF08461 Ribonuclease R winged-helix domain D3H41_15225 PF02082 Transcriptional regulator D3H41_15230 PF00175 Oxidoreductase NAD-binding domain D3H41_15230 PF00042 Globin D3H41_15230 PF00970 Oxidoreductase FAD-binding domain D3H41_15235 PF08238 Sel1 repeat D3H41_15245 PF00709 Adenylosuccinate synthetase D3H41_15250 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) D3H41_15255 PF01145 SPFH domain / Band 7 family D3H41_15260 PF12221 Bacterial membrane protein N terminal D3H41_15260 PF01145 SPFH domain / Band 7 family D3H41_15265 PF16360 GTP-binding GTPase Middle Region D3H41_15265 PF01926 50S ribosome-binding GTPase D3H41_15265 PF13167 GTP-binding GTPase N-terminal D3H41_15270 PF17209 Hfq protein D3H41_15280 PF01119 DNA mismatch repair protein, C-terminal domain D3H41_15280 PF08676 MutL C terminal dimerisation domain D3H41_15285 PF01520 N-acetylmuramoyl-L-alanine amidase D3H41_15290 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D3H41_15300 PF08331 Domain of unknown function (DUF1730) D3H41_15365 PF00929 Exonuclease D3H41_15370 PF03193 RsgA GTPase D3H41_15375 PF02666 Phosphatidylserine decarboxylase D3H41_15380 PF02080 TrkA-C domain D3H41_15380 PF03600 Citrate transporter D3H41_15390 PF01676 Metalloenzyme superfamily D3H41_15390 PF06415 BPG-independent PGAM N-terminus (iPGM_N) D3H41_15395 PF00581 Rhodanese-like domain D3H41_15400 PF02556 Preprotein translocase subunit SecB D3H41_15405 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D3H41_15405 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D3H41_15410 PF00132 Bacterial transferase hexapeptide (six repeats) D3H41_15410 PF06426 Serine acetyltransferase, N-terminal D3H41_15415 PF01551 Peptidase family M23 D3H41_15425 PF00440 Bacterial regulatory proteins, tetR family D3H41_15425 PF08360 QacR-like protein, C-terminal region D3H41_15435 PF00152 tRNA synthetases class II (D, K and N) D3H41_15440 PF00890 FAD binding domain D3H41_15440 PF02910 Fumarate reductase flavoprotein C-term D3H41_15445 PF13085 2Fe-2S iron-sulfur cluster binding domain D3H41_15445 PF13183 4Fe-4S dicluster domain D3H41_15450 PF02300 Fumarate reductase subunit C D3H41_15455 PF02313 Fumarate reductase subunit D D3H41_15465 PF09285 Elongation factor P, C-terminal D3H41_15465 PF01132 Elongation factor P (EF-P) OB domain D3H41_15465 PF08207 Elongation factor P (EF-P) KOW-like domain D3H41_15470 PF04055 Radical SAM superfamily D3H41_15475 PF02308 MgtC family D3H41_15485 PF00118 TCP-1/cpn60 chaperonin family D3H41_15490 PF00166 Chaperonin 10 Kd subunit D3H41_15495 PF01554 MatE D3H41_15500 PF00365 Phosphofructokinase D3H41_15505 PF01545 Cation efflux family D3H41_15505 PF16916 Dimerisation domain of Zinc Transporter D3H41_15510 PF07813 LTXXQ motif family protein D3H41_15515 PF00072 Response regulator receiver domain D3H41_15515 PF00486 Transcriptional regulatory protein, C terminal D3H41_15520 PF00672 HAMP domain D3H41_15520 PF16527 Two-component sensor protein CpxA, periplasmic domain D3H41_15520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_15520 PF00512 His Kinase A (phospho-acceptor) domain D3H41_15525 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D3H41_15525 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D3H41_15530 PF00588 SpoU rRNA Methylase family D3H41_15535 PF04186 FxsA cytoplasmic membrane protein D3H41_15540 PF10415 Fumarase C C-terminus D3H41_15540 PF00206 Lyase D3H41_15545 PF03605 Anaerobic c4-dicarboxylate membrane transporter D3H41_15550 PF02683 Cytochrome C biogenesis protein transmembrane region D3H41_15550 PF11412 Disulphide bond corrector protein DsbC D3H41_15555 PF00196 Bacterial regulatory proteins, luxR family D3H41_15555 PF00072 Response regulator receiver domain D3H41_15560 PF02080 TrkA-C domain D3H41_15560 PF00999 Sodium/hydrogen exchanger family D3H41_15560 PF03471 Transporter associated domain D3H41_15570 PF00474 Sodium:solute symporter family D3H41_15585 PF10415 Fumarase C C-terminus D3H41_15585 PF00206 Lyase D3H41_15590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_15590 PF00672 HAMP domain D3H41_15590 PF00512 His Kinase A (phospho-acceptor) domain D3H41_15590 PF01627 Hpt domain D3H41_15590 PF00072 Response regulator receiver domain D3H41_15595 PF12832 MFS_1 like family D3H41_15610 PF00501 AMP-binding enzyme D3H41_15610 PF16177 Acetyl-coenzyme A synthetase N-terminus D3H41_15610 PF13193 AMP-binding enzyme C-terminal domain D3H41_15615 PF01220 Dehydroquinase class II D3H41_15620 PF00364 Biotin-requiring enzyme D3H41_15625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3H41_15625 PF00289 Biotin carboxylase, N-terminal domain D3H41_15625 PF02785 Biotin carboxylase C-terminal domain D3H41_15640 PF01207 Dihydrouridine synthase (Dus) D3H41_15645 PF02954 Bacterial regulatory protein, Fis family D3H41_15655 PF12848 ABC transporter D3H41_15655 PF00005 ABC transporter D3H41_15720 PF01276 Orn/Lys/Arg decarboxylase, major domain D3H41_15720 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D3H41_15720 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain D3H41_15725 PF13520 Amino acid permease D3H41_15735 PF00486 Transcriptional regulatory protein, C terminal D3H41_15735 PF18500 CadC C-terminal domain 1 D3H41_15750 PF00466 Ribosomal protein L10 D3H41_15755 PF00542 Ribosomal protein L7/L12 C-terminal domain D3H41_15755 PF16320 Ribosomal protein L7/L12 dimerisation domain D3H41_15775 PF09297 NADH pyrophosphatase zinc ribbon domain D3H41_15775 PF00293 NUDIX domain D3H41_15780 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ D3H41_15790 PF04997 RNA polymerase Rpb1, domain 1 D3H41_15790 PF04998 RNA polymerase Rpb1, domain 5 D3H41_15790 PF04983 RNA polymerase Rpb1, domain 3 D3H41_15790 PF05000 RNA polymerase Rpb1, domain 4 D3H41_15790 PF00623 RNA polymerase Rpb1, domain 2 D3H41_15795 PF04563 RNA polymerase beta subunit D3H41_15795 PF04565 RNA polymerase Rpb2, domain 3 D3H41_15795 PF10385 RNA polymerase beta subunit external 1 domain D3H41_15795 PF04560 RNA polymerase Rpb2, domain 7 D3H41_15795 PF00562 RNA polymerase Rpb2, domain 6 D3H41_15795 PF04561 RNA polymerase Rpb2, domain 2 D3H41_15800 PF16320 Ribosomal protein L7/L12 dimerisation domain D3H41_15800 PF00542 Ribosomal protein L7/L12 C-terminal domain D3H41_15805 PF00466 Ribosomal protein L10 D3H41_15810 PF00687 Ribosomal protein L1p/L10e family D3H41_15815 PF03946 Ribosomal protein L11, N-terminal domain D3H41_15815 PF00298 Ribosomal protein L11, RNA binding domain D3H41_15820 PF00467 KOW motif D3H41_15820 PF02357 Transcription termination factor nusG D3H41_15825 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D3H41_15835 PF03144 Elongation factor Tu domain 2 D3H41_15835 PF03143 Elongation factor Tu C-terminal domain D3H41_15835 PF00009 Elongation factor Tu GTP binding domain D3H41_15865 PF00485 Phosphoribulokinase / Uridine kinase family D3H41_15870 PF02237 Biotin protein ligase C terminal domain D3H41_15870 PF08279 HTH domain D3H41_15870 PF03099 Biotin/lipoate A/B protein ligase family D3H41_15875 PF01565 FAD binding domain D3H41_15875 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D3H41_15885 PF13091 PLD-like domain D3H41_15940 PF01177 Asp/Glu/Hydantoin racemase D3H41_15950 PF07715 TonB-dependent Receptor Plug Domain D3H41_15950 PF00593 TonB dependent receptor D3H41_15955 PF05958 tRNA (Uracil-5-)-methyltransferase D3H41_15965 PF00440 Bacterial regulatory proteins, tetR family D3H41_15970 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_15970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3H41_15975 PF01554 MatE D3H41_15980 PF04072 Leucine carboxyl methyltransferase D3H41_15990 PF00717 Peptidase S24-like D3H41_15990 PF01726 LexA DNA binding domain D3H41_16000 PF01553 Acyltransferase D3H41_16005 PF01040 UbiA prenyltransferase family D3H41_16010 PF04345 Chorismate lyase D3H41_16015 PF03748 Flagellar basal body-associated protein FliL D3H41_16020 PF01694 Rhomboid family D3H41_16020 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease D3H41_16025 PF00581 Rhodanese-like domain D3H41_16035 PF04545 Sigma-70, region 4 D3H41_16035 PF04542 Sigma-70 region 2 D3H41_16035 PF00140 Sigma-70 factor, region 1.2 D3H41_16040 PF18075 FtsX extracellular domain D3H41_16045 PF00005 ABC transporter D3H41_16050 PF00448 SRP54-type protein, GTPase domain D3H41_16050 PF02881 SRP54-type protein, helical bundle domain D3H41_16065 PF01914 MarC family integral membrane protein D3H41_16090 PF10694 Protein of unknown function (DUF2500) D3H41_16110 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D3H41_16110 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D3H41_16115 PF01022 Bacterial regulatory protein, arsR family D3H41_16120 PF08668 HDOD domain D3H41_16120 PF00563 EAL domain D3H41_16125 PF01810 LysE type translocator D3H41_16130 PF12146 Serine aminopeptidase, S33 D3H41_16155 PF00563 EAL domain D3H41_16155 PF08495 FIST N domain D3H41_16155 PF10442 FIST C domain D3H41_16155 PF00990 Diguanylate cyclase, GGDEF domain D3H41_16160 PF13419 Haloacid dehalogenase-like hydrolase D3H41_16165 PF02899 Phage integrase, N-terminal SAM-like domain D3H41_16165 PF00589 Phage integrase family D3H41_16175 PF01678 Diaminopimelate epimerase D3H41_16180 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D3H41_16180 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D3H41_16190 PF01491 Frataxin-like domain D3H41_16195 PF01295 Adenylate cyclase, class-I D3H41_16195 PF12633 Adenylate cyclase NT domain D3H41_16200 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D3H41_16200 PF03900 Porphobilinogen deaminase, C-terminal domain D3H41_16205 PF02602 Uroporphyrinogen-III synthase HemD D3H41_16210 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase D3H41_16215 PF07219 HemY protein N-terminus D3H41_16255 PF00175 Oxidoreductase NAD-binding domain D3H41_16260 PF00111 2Fe-2S iron-sulfur cluster binding domain D3H41_16265 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D3H41_16275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3H41_16275 PF07497 Rho termination factor, RNA-binding domain D3H41_16275 PF07498 Rho termination factor, N-terminal domain D3H41_16280 PF00085 Thioredoxin D3H41_16285 PF00270 DEAD/DEAH box helicase D3H41_16285 PF00271 Helicase conserved C-terminal domain D3H41_16290 PF02541 Ppx/GppA phosphatase family D3H41_16300 PF02592 Putative vitamin uptake transporter D3H41_16315 PF00271 Helicase conserved C-terminal domain D3H41_16315 PF16124 RecQ zinc-binding D3H41_16315 PF09382 RQC domain D3H41_16315 PF00270 DEAD/DEAH box helicase D3H41_16315 PF00570 HRDC domain D3H41_16320 PF00892 EamA-like transporter family D3H41_16330 PF01810 LysE type translocator D3H41_16345 PF00580 UvrD/REP helicase N-terminal domain D3H41_16345 PF13361 UvrD-like helicase C-terminal domain D3H41_16355 PF05114 Protein of unknown function (DUF692) D3H41_16375 PF07690 Major Facilitator Superfamily D3H41_16380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_16380 PF03466 LysR substrate binding domain D3H41_16385 PF00557 Metallopeptidase family M24 D3H41_16385 PF01321 Creatinase/Prolidase N-terminal domain D3H41_16385 PF00557 Metallopeptidase family M24 D3H41_16385 PF01321 Creatinase/Prolidase N-terminal domain D3H41_16390 PF04055 Radical SAM superfamily D3H41_16390 PF06968 Biotin and Thiamin Synthesis associated domain D3H41_16395 PF05690 Thiazole biosynthesis protein ThiG D3H41_16400 PF02597 ThiS family D3H41_16405 PF00899 ThiF family D3H41_16410 PF02581 Thiamine monophosphate synthase D3H41_16415 PF01964 Radical SAM ThiC family D3H41_16415 PF13667 ThiC-associated domain D3H41_16420 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D3H41_16425 PF07731 Multicopper oxidase D3H41_16425 PF00394 Multicopper oxidase D3H41_16425 PF07732 Multicopper oxidase D3H41_16470 PF00132 Bacterial transferase hexapeptide (six repeats) D3H41_16475 PF07369 Protein of unknown function (DUF1488) D3H41_16480 PF08501 Shikimate dehydrogenase substrate binding domain D3H41_16480 PF01488 Shikimate / quinate 5-dehydrogenase D3H41_16480 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D3H41_16485 PF01218 Coproporphyrinogen III oxidase D3H41_16490 PF01300 Telomere recombination D3H41_16495 PF00731 AIR carboxylase D3H41_16500 PF02222 ATP-grasp domain D3H41_16500 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D3H41_16505 PF01797 Transposase IS200 like D3H41_16510 PF01396 Topoisomerase DNA binding C4 zinc finger D3H41_16520 PF04361 Protein of unknown function (DUF494) D3H41_16525 PF02481 DNA recombination-mediator protein A D3H41_16525 PF17782 DprA winged helix domain D3H41_16535 PF01327 Polypeptide deformylase D3H41_16540 PF02911 Formyl transferase, C-terminal domain D3H41_16540 PF00551 Formyl transferase D3H41_16545 PF01029 NusB family D3H41_16545 PF01189 16S rRNA methyltransferase RsmB/F D3H41_16550 PF02254 TrkA-N domain D3H41_16550 PF02080 TrkA-C domain D3H41_16555 PF02386 Cation transport protein D3H41_16565 PF03006 Haemolysin-III related D3H41_16570 PF07070 SpoOM protein D3H41_16580 PF06288 Protein of unknown function (DUF1040) D3H41_16585 PF13746 4Fe-4S dicluster domain D3H41_16585 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase D3H41_16585 PF12801 4Fe-4S binding domain D3H41_16590 PF01636 Phosphotransferase enzyme family D3H41_16595 PF01323 DSBA-like thioredoxin domain D3H41_16600 PF01553 Acyltransferase D3H41_16610 PF01078 Magnesium chelatase, subunit ChlI D3H41_16610 PF13335 Magnesium chelatase, subunit ChlI C-terminal D3H41_16615 PF00205 Thiamine pyrophosphate enzyme, central domain D3H41_16615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3H41_16615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3H41_16625 PF01063 Amino-transferase class IV D3H41_16630 PF00920 Dehydratase family D3H41_16635 PF00585 C-terminal regulatory domain of Threonine dehydratase D3H41_16635 PF00291 Pyridoxal-phosphate dependent enzyme D3H41_16640 PF03466 LysR substrate binding domain D3H41_16640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_16645 PF07690 Major Facilitator Superfamily D3H41_16650 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3H41_16655 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_16660 PF00132 Bacterial transferase hexapeptide (six repeats) D3H41_16660 PF12804 MobA-like NTP transferase domain D3H41_16665 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain D3H41_16665 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D3H41_16670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3H41_16670 PF02874 ATP synthase alpha/beta family, beta-barrel domain D3H41_16675 PF00231 ATP synthase D3H41_16680 PF00306 ATP synthase alpha/beta chain, C terminal domain D3H41_16680 PF02874 ATP synthase alpha/beta family, beta-barrel domain D3H41_16680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3H41_16685 PF00213 ATP synthase delta (OSCP) subunit D3H41_16690 PF00430 ATP synthase B/B' CF(0) D3H41_16695 PF00137 ATP synthase subunit C D3H41_16700 PF00119 ATP synthase A chain D3H41_16705 PF03899 ATP synthase I chain D3H41_16710 PF02195 ParB-like nuclease domain D3H41_16710 PF17762 HTH domain found in ParB protein D3H41_16715 PF13614 AAA domain D3H41_16720 PF02527 rRNA small subunit methyltransferase G D3H41_16725 PF01134 Glucose inhibited division protein A D3H41_16725 PF13932 GidA associated domain D3H41_16730 PF00258 Flavodoxin D3H41_16745 PF01381 Helix-turn-helix D3H41_16780 PF02384 N-6 DNA Methylase D3H41_16785 PF18766 SWI2/SNF2 ATPase D3H41_16785 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D3H41_16785 PF12008 Type I restriction and modification enzyme - subunit R C terminal D3H41_16815 PF00589 Phage integrase family D3H41_16815 PF02899 Phage integrase, N-terminal SAM-like domain D3H41_16820 PF10396 GTP-binding protein TrmE N-terminus D3H41_16820 PF12631 MnmE helical domain D3H41_16820 PF01926 50S ribosome-binding GTPase D3H41_16825 PF14849 YidC periplasmic domain D3H41_16825 PF02096 60Kd inner membrane protein D3H41_16830 PF01809 Putative membrane protein insertion efficiency factor D3H41_16835 PF00825 Ribonuclease P D3H41_16840 PF00468 Ribosomal protein L34 D3H41_16845 PF00005 ABC transporter D3H41_16850 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_16855 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3H41_16870 PF01925 Sulfite exporter TauE/SafE D3H41_16880 PF00271 Helicase conserved C-terminal domain D3H41_16880 PF00270 DEAD/DEAH box helicase D3H41_16885 PF09905 DNA-binding protein VF530 D3H41_16895 PF00291 Pyridoxal-phosphate dependent enzyme D3H41_16905 PF00313 'Cold-shock' DNA-binding domain D3H41_16915 PF01470 Pyroglutamyl peptidase D3H41_16925 PF02492 CobW/HypB/UreG, nucleotide-binding domain D3H41_16925 PF07683 Cobalamin synthesis protein cobW C-terminal domain D3H41_16930 PF00270 DEAD/DEAH box helicase D3H41_16930 PF00271 Helicase conserved C-terminal domain D3H41_16950 PF00563 EAL domain D3H41_16950 PF12792 CSS motif domain associated with EAL D3H41_16955 PF00005 ABC transporter D3H41_16960 PF12729 Four helix bundle sensory module for signal transduction D3H41_16960 PF00672 HAMP domain D3H41_16960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_16980 PF12849 PBP superfamily domain D3H41_16990 PF12833 Helix-turn-helix domain D3H41_16995 PF00575 S1 RNA binding domain D3H41_16995 PF08206 Ribonuclease B OB domain D3H41_16995 PF00773 RNB domain D3H41_17000 PF03880 DbpA RNA binding domain D3H41_17000 PF00271 Helicase conserved C-terminal domain D3H41_17000 PF00270 DEAD/DEAH box helicase D3H41_17010 PF03707 Bacterial signalling protein N terminal repeat D3H41_17010 PF00990 Diguanylate cyclase, GGDEF domain D3H41_17010 PF00563 EAL domain D3H41_17020 PF00871 Acetokinase family D3H41_17025 PF03466 LysR substrate binding domain D3H41_17025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_17030 PF12146 Serine aminopeptidase, S33 D3H41_17035 PF12146 Serine aminopeptidase, S33 D3H41_17055 PF01037 Lrp/AsnC ligand binding domain D3H41_17060 PF08240 Alcohol dehydrogenase GroES-like domain D3H41_17060 PF00107 Zinc-binding dehydrogenase D3H41_17065 PF14748 Pyrroline-5-carboxylate reductase dimerisation D3H41_17065 PF03807 NADP oxidoreductase coenzyme F420-dependent D3H41_17075 PF08447 PAS fold D3H41_17075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_17075 PF13426 PAS domain D3H41_17080 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_17085 PF00571 CBS domain D3H41_17085 PF00005 ABC transporter D3H41_17090 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_17095 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D3H41_17110 PF01965 DJ-1/PfpI family D3H41_17110 PF12833 Helix-turn-helix domain D3H41_17115 PF00561 alpha/beta hydrolase fold D3H41_17120 PF04909 Amidohydrolase D3H41_17125 PF01565 FAD binding domain D3H41_17125 PF13183 4Fe-4S dicluster domain D3H41_17125 PF02913 FAD linked oxidases, C-terminal domain D3H41_17135 PF00682 HMGL-like D3H41_17140 PF00378 Enoyl-CoA hydratase/isomerase D3H41_17145 PF01039 Carboxyl transferase domain D3H41_17150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3H41_17150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3H41_17150 PF02770 Acyl-CoA dehydrogenase, middle domain D3H41_17155 PF09278 MerR, DNA binding D3H41_17155 PF00376 MerR family regulatory protein D3H41_17160 PF02803 Thiolase, C-terminal domain D3H41_17160 PF00108 Thiolase, N-terminal domain D3H41_17165 PF00171 Aldehyde dehydrogenase family D3H41_17175 PF00378 Enoyl-CoA hydratase/isomerase D3H41_17180 PF00378 Enoyl-CoA hydratase/isomerase D3H41_17185 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3H41_17185 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3H41_17195 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D3H41_17195 PF06481 COX Aromatic Rich Motif D3H41_17200 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3H41_17205 PF00510 Cytochrome c oxidase subunit III D3H41_17215 PF01040 UbiA prenyltransferase family D3H41_17225 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D3H41_17225 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_17240 PF00171 Aldehyde dehydrogenase family D3H41_17250 PF02028 BCCT, betaine/carnitine/choline family transporter D3H41_17280 PF00005 ABC transporter D3H41_17285 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3H41_17290 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_17295 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_17305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_17305 PF03466 LysR substrate binding domain D3H41_17320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_17320 PF03466 LysR substrate binding domain D3H41_17330 PF00766 Electron transfer flavoprotein FAD-binding domain D3H41_17330 PF01012 Electron transfer flavoprotein domain D3H41_17335 PF02817 e3 binding domain D3H41_17335 PF00364 Biotin-requiring enzyme D3H41_17335 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D3H41_17340 PF02779 Transketolase, pyrimidine binding domain D3H41_17340 PF02780 Transketolase, C-terminal domain D3H41_17345 PF00676 Dehydrogenase E1 component D3H41_17360 PF00474 Sodium:solute symporter family D3H41_17365 PF07733 Bacterial DNA polymerase III alpha NTPase domain D3H41_17365 PF11490 DNA polymerase III polC-type N-terminus II D3H41_17365 PF14579 Helix-hairpin-helix motif D3H41_17365 PF02811 PHP domain D3H41_17365 PF00929 Exonuclease D3H41_17365 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D3H41_17370 PF00571 CBS domain D3H41_17375 PF00392 Bacterial regulatory proteins, gntR family D3H41_17375 PF07729 FCD domain D3H41_17380 PF00392 Bacterial regulatory proteins, gntR family D3H41_17380 PF07729 FCD domain D3H41_17390 PF08787 Alginate lyase D3H41_17405 PF08787 Alginate lyase D3H41_17410 PF08787 Alginate lyase D3H41_17415 PF05426 Alginate lyase D3H41_17415 PF07940 Heparinase II/III-like protein D3H41_17420 PF05426 Alginate lyase D3H41_17420 PF07940 Heparinase II/III-like protein D3H41_17425 PF07883 Cupin domain D3H41_17430 PF00294 pfkB family carbohydrate kinase D3H41_17435 PF01081 KDPG and KHG aldolase D3H41_17445 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D3H41_17445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3H41_17455 PF04314 Copper chaperone PCu(A)C D3H41_17490 PF00072 Response regulator receiver domain D3H41_17490 PF00486 Transcriptional regulatory protein, C terminal D3H41_17510 PF00082 Subtilase family D3H41_17510 PF01483 Proprotein convertase P-domain D3H41_17520 PF00990 Diguanylate cyclase, GGDEF domain D3H41_17520 PF07694 5TMR of 5TMR-LYT D3H41_17530 PF03222 Tryptophan/tyrosine permease family D3H41_17540 PF00384 Molybdopterin oxidoreductase D3H41_17540 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3H41_17540 PF01568 Molydopterin dinucleotide binding domain D3H41_17545 PF10414 Sirohaem synthase dimerisation region D3H41_17545 PF14824 Sirohaem biosynthesis protein central D3H41_17545 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3H41_17550 PF00591 Glycosyl transferase family, a/b domain D3H41_17550 PF02885 Glycosyl transferase family, helical bundle domain D3H41_17555 PF01738 Dienelactone hydrolase family D3H41_17560 PF08376 Nitrate and nitrite sensing D3H41_17560 PF03861 ANTAR domain D3H41_17570 PF00005 ABC transporter D3H41_17575 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_17580 PF00005 ABC transporter D3H41_17585 PF18267 Rubredoxin NAD+ reductase C-terminal domain D3H41_17585 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_17585 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D3H41_17585 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D3H41_17585 PF04324 BFD-like [2Fe-2S] binding domain D3H41_17585 PF13806 Rieske-like [2Fe-2S] domain D3H41_17615 PF00211 Adenylate and Guanylate cyclase catalytic domain D3H41_17615 PF00072 Response regulator receiver domain D3H41_17635 PF03793 PASTA domain D3H41_17635 PF00069 Protein kinase domain D3H41_17655 PF00691 OmpA family D3H41_17655 PF13677 Membrane MotB of proton-channel complex MotA/MotB D3H41_17715 PF07724 AAA domain (Cdc48 subfamily) D3H41_17715 PF10431 C-terminal, D2-small domain, of ClpB protein D3H41_17715 PF17871 AAA lid domain D3H41_17715 PF00004 ATPase family associated with various cellular activities (AAA) D3H41_17725 PF16671 Actin cross-linking domain D3H41_17725 PF04717 Type VI secretion system, phage-baseplate injector D3H41_17740 PF00149 Calcineurin-like phosphoesterase D3H41_17740 PF12320 Type 5 capsule protein repressor C-terminal domain D3H41_17745 PF13476 AAA domain D3H41_17755 PF08212 Lipocalin-like domain D3H41_17765 PF03606 C4-dicarboxylate anaerobic carrier D3H41_17775 PF01212 Beta-eliminating lyase D3H41_17785 PF07728 AAA domain (dynein-related subfamily) D3H41_17785 PF17868 AAA lid domain D3H41_17785 PF12592 Protein of unknown function (DUF3763) D3H41_17790 PF05762 VWA domain containing CoxE-like protein D3H41_17805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_17805 PF03466 LysR substrate binding domain D3H41_17810 PF09330 D-lactate dehydrogenase, membrane binding D3H41_17810 PF01565 FAD binding domain D3H41_17825 PF01168 Alanine racemase, N-terminal domain D3H41_17825 PF00842 Alanine racemase, C-terminal domain D3H41_17830 PF00672 HAMP domain D3H41_17830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_17845 PF00128 Alpha amylase, catalytic domain D3H41_17845 PF09154 Domain of unknown function (DUF1939) D3H41_17905 PF13426 PAS domain D3H41_17905 PF00563 EAL domain D3H41_17905 PF00990 Diguanylate cyclase, GGDEF domain D3H41_17915 PF14760 Rnk N-terminus D3H41_17915 PF01272 Transcription elongation factor, GreA/GreB, C-term D3H41_17920 PF04324 BFD-like [2Fe-2S] binding domain D3H41_17920 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D3H41_17920 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D3H41_17920 PF18267 Rubredoxin NAD+ reductase C-terminal domain D3H41_17920 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_17925 PF13806 Rieske-like [2Fe-2S] domain D3H41_17930 PF01226 Formate/nitrite transporter D3H41_17935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3H41_17935 PF14824 Sirohaem biosynthesis protein central D3H41_17935 PF10414 Sirohaem synthase dimerisation region D3H41_17950 PF03605 Anaerobic c4-dicarboxylate membrane transporter D3H41_17965 PF00593 TonB dependent receptor D3H41_17965 PF07715 TonB-dependent Receptor Plug Domain D3H41_17975 PF13302 Acetyltransferase (GNAT) domain D3H41_17980 PF11756 Nitrous oxide-stimulated promoter D3H41_17985 PF07690 Major Facilitator Superfamily D3H41_17990 PF00085 Thioredoxin D3H41_17995 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D3H41_17995 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D3H41_18015 PF01238 Phosphomannose isomerase type I D3H41_18020 PF07690 Major Facilitator Superfamily D3H41_18025 PF05231 MASE1 D3H41_18025 PF07730 Histidine kinase D3H41_18025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_18030 PF00072 Response regulator receiver domain D3H41_18030 PF00196 Bacterial regulatory proteins, luxR family D3H41_18035 PF07690 Major Facilitator Superfamily D3H41_18040 PF02634 FdhD/NarQ family D3H41_18045 PF03466 LysR substrate binding domain D3H41_18045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_18055 PF00384 Molybdopterin oxidoreductase D3H41_18070 PF02567 Phenazine biosynthesis-like protein D3H41_18075 PF01177 Asp/Glu/Hydantoin racemase D3H41_18080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3H41_18080 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_18090 PF04143 Sulphur transport D3H41_18110 PF03477 ATP cone domain D3H41_18110 PF13597 Anaerobic ribonucleoside-triphosphate reductase D3H41_18120 PF01554 MatE D3H41_18125 PF12833 Helix-turn-helix domain D3H41_18125 PF12852 Cupin D3H41_18130 PF00155 Aminotransferase class I and II D3H41_18135 PF08443 RimK-like ATP-grasp domain D3H41_18135 PF18030 RimK PreATP-grasp domain D3H41_18145 PF04076 Bacterial OB fold (BOF) protein D3H41_18150 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D3H41_18150 PF07685 CobB/CobQ-like glutamine amidotransferase domain D3H41_18160 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_18165 PF03459 TOBE domain D3H41_18165 PF00005 ABC transporter D3H41_18175 PF00563 EAL domain D3H41_18175 PF01590 GAF domain D3H41_18175 PF00990 Diguanylate cyclase, GGDEF domain D3H41_18175 PF00360 Phytochrome region D3H41_18180 PF00072 Response regulator receiver domain D3H41_18180 PF00990 Diguanylate cyclase, GGDEF domain D3H41_18195 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D3H41_18195 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D3H41_18195 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D3H41_18200 PF02233 NAD(P) transhydrogenase beta subunit D3H41_18210 PF00072 Response regulator receiver domain D3H41_18210 PF00486 Transcriptional regulatory protein, C terminal D3H41_18225 PF03701 Uncharacterised protein family (UPF0181) D3H41_18240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_18240 PF03466 LysR substrate binding domain D3H41_18280 PF05707 Zonular occludens toxin (Zot) D3H41_18330 PF01253 Translation initiation factor SUI1 D3H41_18340 PF01820 D-ala D-ala ligase N-terminus D3H41_18340 PF07478 D-ala D-ala ligase C-terminus D3H41_18345 PF05036 Sporulation related domain D3H41_18350 PF13607 Succinyl-CoA ligase like flavodoxin domain D3H41_18350 PF13380 CoA binding domain D3H41_18350 PF00583 Acetyltransferase (GNAT) family D3H41_18355 PF03466 LysR substrate binding domain D3H41_18355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_18360 PF04886 PT repeat D3H41_18360 PF00593 TonB dependent receptor D3H41_18360 PF07715 TonB-dependent Receptor Plug Domain D3H41_18370 PF16363 GDP-mannose 4,6 dehydratase D3H41_18375 PF00990 Diguanylate cyclase, GGDEF domain D3H41_18375 PF08447 PAS fold D3H41_18375 PF08448 PAS fold D3H41_18375 PF05231 MASE1 D3H41_18375 PF13426 PAS domain D3H41_18375 PF00563 EAL domain D3H41_18380 PF03746 LamB/YcsF family D3H41_18385 PF02682 Carboxyltransferase domain, subdomain C and D D3H41_18390 PF02626 Carboxyltransferase domain, subdomain A and B D3H41_18405 PF00005 ABC transporter D3H41_18410 PF13472 GDSL-like Lipase/Acylhydrolase family D3H41_18415 PF12241 Trans-2-enoyl-CoA reductase catalytic region D3H41_18415 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase D3H41_18415 PF07055 Enoyl reductase FAD binding domain D3H41_18420 PF00990 Diguanylate cyclase, GGDEF domain D3H41_18420 PF00563 EAL domain D3H41_18420 PF13188 PAS domain D3H41_18420 PF03707 Bacterial signalling protein N terminal repeat D3H41_18430 PF01556 DnaJ C terminal domain D3H41_18430 PF00226 DnaJ domain D3H41_18430 PF00684 DnaJ central domain D3H41_18455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3H41_18455 PF12793 Sugar transport-related sRNA regulator N-term D3H41_18465 PF03061 Thioesterase superfamily D3H41_18480 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D3H41_18485 PF12262 Bacterial virulence factor lipase N-terminal D3H41_18505 PF03741 Integral membrane protein TerC family D3H41_18510 PF02872 5'-nucleotidase, C-terminal domain D3H41_18510 PF00149 Calcineurin-like phosphoesterase D3H41_18515 PF11398 Protein of unknown function (DUF2813) D3H41_18520 PF06496 Protein of unknown function (DUF1097) D3H41_18525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_18525 PF03466 LysR substrate binding domain D3H41_18530 PF01226 Formate/nitrite transporter D3H41_18535 PF04264 YceI-like domain D3H41_18540 PF01292 Prokaryotic cytochrome b561 D3H41_18560 PF00270 DEAD/DEAH box helicase D3H41_18560 PF00271 Helicase conserved C-terminal domain D3H41_18565 PF04336 Acyl carrier protein phosphodiesterase D3H41_18575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_18575 PF00672 HAMP domain D3H41_18575 PF12729 Four helix bundle sensory module for signal transduction D3H41_18585 PF13419 Haloacid dehalogenase-like hydrolase D3H41_18600 PF00294 pfkB family carbohydrate kinase D3H41_18605 PF01268 Formate--tetrahydrofolate ligase D3H41_18610 PF00483 Nucleotidyl transferase D3H41_18615 PF00704 Glycosyl hydrolases family 18 D3H41_18615 PF06483 Chitinase C D3H41_18625 PF12833 Helix-turn-helix domain D3H41_18625 PF06719 AraC-type transcriptional regulator N-terminus D3H41_18630 PF00465 Iron-containing alcohol dehydrogenase D3H41_18640 PF00005 ABC transporter D3H41_18645 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_18650 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3H41_18655 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_18660 PF00563 EAL domain D3H41_18660 PF01590 GAF domain D3H41_18660 PF00989 PAS fold D3H41_18660 PF00990 Diguanylate cyclase, GGDEF domain D3H41_18675 PF00356 Bacterial regulatory proteins, lacI family D3H41_18675 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D3H41_18680 PF00381 PTS HPr component phosphorylation site D3H41_18680 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D3H41_18685 PF00294 pfkB family carbohydrate kinase D3H41_18690 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D3H41_18690 PF02378 Phosphotransferase system, EIIC D3H41_18700 PF00873 AcrB/AcrD/AcrF family D3H41_18720 PF01571 Aminomethyltransferase folate-binding domain D3H41_18720 PF08669 Glycine cleavage T-protein C-terminal barrel domain D3H41_18730 PF00464 Serine hydroxymethyltransferase D3H41_18735 PF01597 Glycine cleavage H-protein D3H41_18740 PF02347 Glycine cleavage system P-protein D3H41_18745 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3H41_18755 PF16123 Hydroxyacylglutathione hydrolase C-terminus D3H41_18755 PF00753 Metallo-beta-lactamase superfamily D3H41_18760 PF03466 LysR substrate binding domain D3H41_18760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_18765 PF00892 EamA-like transporter family D3H41_18770 PF02627 Carboxymuconolactone decarboxylase family D3H41_18775 PF12833 Helix-turn-helix domain D3H41_18825 PF02811 PHP domain D3H41_18825 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D3H41_18825 PF00929 Exonuclease D3H41_18825 PF14579 Helix-hairpin-helix motif D3H41_18825 PF07733 Bacterial DNA polymerase III alpha NTPase domain D3H41_18825 PF11490 DNA polymerase III polC-type N-terminus II D3H41_18835 PF00005 ABC transporter D3H41_18835 PF00664 ABC transporter transmembrane region D3H41_18855 PF02253 Phospholipase A1 D3H41_18865 PF00376 MerR family regulatory protein D3H41_18865 PF09278 MerR, DNA binding D3H41_18870 PF01327 Polypeptide deformylase D3H41_18905 PF00571 CBS domain D3H41_18905 PF01769 Divalent cation transporter D3H41_18905 PF03448 MgtE intracellular N domain D3H41_18925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3H41_18930 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D3H41_18940 PF01757 Acyltransferase family D3H41_18955 PF00141 Peroxidase D3H41_18960 PF13187 4Fe-4S dicluster domain D3H41_18960 PF01645 Conserved region in glutamate synthase D3H41_18970 PF00171 Aldehyde dehydrogenase family D3H41_18985 PF00892 EamA-like transporter family D3H41_18990 PF00893 Small Multidrug Resistance protein D3H41_19010 PF00892 EamA-like transporter family D3H41_19020 PF08334 Type II secretion system (T2SS), protein G D3H41_19020 PF07963 Prokaryotic N-terminal methylation motif D3H41_19025 PF01584 CheW-like domain D3H41_19025 PF00072 Response regulator receiver domain D3H41_19035 PF00196 Bacterial regulatory proteins, luxR family D3H41_19035 PF00072 Response regulator receiver domain D3H41_19045 PF00990 Diguanylate cyclase, GGDEF domain D3H41_19050 PF00072 Response regulator receiver domain D3H41_19050 PF00196 Bacterial regulatory proteins, luxR family D3H41_19055 PF13188 PAS domain D3H41_19055 PF03707 Bacterial signalling protein N terminal repeat D3H41_19055 PF00563 EAL domain D3H41_19055 PF00990 Diguanylate cyclase, GGDEF domain D3H41_19060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_19060 PF00512 His Kinase A (phospho-acceptor) domain D3H41_19060 PF09456 RcsC Alpha-Beta-Loop (ABL) D3H41_19060 PF00072 Response regulator receiver domain D3H41_19065 PF01926 50S ribosome-binding GTPase D3H41_19070 PF00155 Aminotransferase class I and II D3H41_19075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_19075 PF00072 Response regulator receiver domain D3H41_19085 PF00583 Acetyltransferase (GNAT) family D3H41_19085 PF00814 Glycoprotease family D3H41_19095 PF03606 C4-dicarboxylate anaerobic carrier D3H41_19110 PF08774 VRR-NUC domain D3H41_19110 PF18081 Fanconi anemia-associated nuclease SAP domain D3H41_19120 PF04076 Bacterial OB fold (BOF) protein D3H41_19125 PF00781 Diacylglycerol kinase catalytic domain D3H41_19130 PF03466 LysR substrate binding domain D3H41_19130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_19135 PF01872 RibD C-terminal domain D3H41_19135 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D3H41_19150 PF00092 von Willebrand factor type A domain D3H41_19165 PF07726 ATPase family associated with various cellular activities (AAA) D3H41_19165 PF17863 AAA lid domain D3H41_19170 PF04055 Radical SAM superfamily D3H41_19170 PF13186 Iron-sulfur cluster-binding domain D3H41_19175 PF00884 Sulfatase D3H41_19175 PF16385 Domain of unknown function D3H41_19180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_19180 PF03466 LysR substrate binding domain D3H41_19185 PF00884 Sulfatase D3H41_19190 PF00072 Response regulator receiver domain D3H41_19190 PF00486 Transcriptional regulatory protein, C terminal D3H41_19205 PF00512 His Kinase A (phospho-acceptor) domain D3H41_19205 PF00072 Response regulator receiver domain D3H41_19205 PF01627 Hpt domain D3H41_19205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_19205 PF00672 HAMP domain D3H41_19210 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D3H41_19215 PF02142 MGS-like domain D3H41_19220 PF00580 UvrD/REP helicase N-terminal domain D3H41_19220 PF13361 UvrD-like helicase C-terminal domain D3H41_19220 PF12462 DNA helicase IV / RNA helicase N terminal D3H41_19225 PF12805 FUSC-like inner membrane protein yccS D3H41_19260 PF07715 TonB-dependent Receptor Plug Domain D3H41_19260 PF00593 TonB dependent receptor D3H41_19270 PF13411 MerR HTH family regulatory protein D3H41_19275 PF00005 ABC transporter D3H41_19280 PF01032 FecCD transport family D3H41_19285 PF01032 FecCD transport family D3H41_19290 PF01497 Periplasmic binding protein D3H41_19300 PF01048 Phosphorylase superfamily D3H41_19305 PF04973 Nicotinamide mononucleotide transporter D3H41_19315 PF00356 Bacterial regulatory proteins, lacI family D3H41_19320 PF00294 pfkB family carbohydrate kinase D3H41_19325 PF13407 Periplasmic binding protein domain D3H41_19330 PF02653 Branched-chain amino acid transport system / permease component D3H41_19335 PF00005 ABC transporter D3H41_19340 PF05025 RbsD / FucU transport protein family D3H41_19345 PF00990 Diguanylate cyclase, GGDEF domain D3H41_19345 PF00563 EAL domain D3H41_19395 PF04116 Fatty acid hydroxylase superfamily D3H41_19405 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D3H41_19405 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D3H41_19415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_19415 PF09308 LuxQ, periplasmic D3H41_19415 PF00072 Response regulator receiver domain D3H41_19415 PF00512 His Kinase A (phospho-acceptor) domain D3H41_19420 PF00034 Cytochrome c D3H41_19420 PF03150 Di-haem cytochrome c peroxidase D3H41_19430 PF16200 C-terminal region of band_7 D3H41_19430 PF01145 SPFH domain / Band 7 family D3H41_19440 PF00881 Nitroreductase family D3H41_19445 PF00571 CBS domain D3H41_19445 PF00005 ABC transporter D3H41_19450 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_19455 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D3H41_19460 PF00732 GMC oxidoreductase D3H41_19460 PF05199 GMC oxidoreductase D3H41_19465 PF00171 Aldehyde dehydrogenase family D3H41_19470 PF00440 Bacterial regulatory proteins, tetR family D3H41_19470 PF13977 BetI-type transcriptional repressor, C-terminal D3H41_19475 PF00990 Diguanylate cyclase, GGDEF domain D3H41_19475 PF00072 Response regulator receiver domain D3H41_19485 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3H41_19485 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3H41_19495 PF00378 Enoyl-CoA hydratase/isomerase D3H41_19500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3H41_19500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3H41_19500 PF02770 Acyl-CoA dehydrogenase, middle domain D3H41_19505 PF00171 Aldehyde dehydrogenase family D3H41_19510 PF00108 Thiolase, N-terminal domain D3H41_19510 PF02803 Thiolase, C-terminal domain D3H41_19515 PF00376 MerR family regulatory protein D3H41_19515 PF09278 MerR, DNA binding D3H41_19520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3H41_19520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3H41_19520 PF02770 Acyl-CoA dehydrogenase, middle domain D3H41_19525 PF01039 Carboxyl transferase domain D3H41_19530 PF00378 Enoyl-CoA hydratase/isomerase D3H41_19535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3H41_19535 PF00364 Biotin-requiring enzyme D3H41_19535 PF00289 Biotin carboxylase, N-terminal domain D3H41_19535 PF02785 Biotin carboxylase C-terminal domain D3H41_19540 PF00682 HMGL-like D3H41_19550 PF12795 Mechanosensitive ion channel porin domain D3H41_19550 PF00924 Mechanosensitive ion channel D3H41_19550 PF12794 Mechanosensitive ion channel inner membrane domain 1 D3H41_19560 PF12464 Maltose acetyltransferase D3H41_19560 PF14602 Hexapeptide repeat of succinyl-transferase D3H41_19565 PF00155 Aminotransferase class I and II D3H41_19565 PF00392 Bacterial regulatory proteins, gntR family D3H41_19570 PF01654 Cytochrome bd terminal oxidase subunit I D3H41_19575 PF02322 Cytochrome bd terminal oxidase subunit II D3H41_19590 PF13419 Haloacid dehalogenase-like hydrolase D3H41_19595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_19595 PF03466 LysR substrate binding domain D3H41_19600 PF03306 Alpha-acetolactate decarboxylase D3H41_19605 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3H41_19605 PF00205 Thiamine pyrophosphate enzyme, central domain D3H41_19605 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3H41_19610 PF00106 short chain dehydrogenase D3H41_19615 PF05724 Thiopurine S-methyltransferase (TPMT) D3H41_19620 PF14535 AMP-binding enzyme C-terminal domain D3H41_19620 PF00501 AMP-binding enzyme D3H41_19625 PF00005 ABC transporter D3H41_19645 PF00501 AMP-binding enzyme D3H41_19650 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3H41_19650 PF00005 ABC transporter D3H41_19665 PF01012 Electron transfer flavoprotein domain D3H41_19670 PF01012 Electron transfer flavoprotein domain D3H41_19670 PF00766 Electron transfer flavoprotein FAD-binding domain D3H41_19675 PF00501 AMP-binding enzyme D3H41_19675 PF13193 AMP-binding enzyme C-terminal domain D3H41_19680 PF00367 phosphotransferase system, EIIB D3H41_19680 PF02378 Phosphotransferase system, EIIC D3H41_19685 PF11975 Family 4 glycosyl hydrolase C-terminal domain D3H41_19685 PF02056 Family 4 glycosyl hydrolase D3H41_19690 PF00392 Bacterial regulatory proteins, gntR family D3H41_19690 PF07702 UTRA domain D3H41_19695 PF03334 Na+/H+ antiporter subunit D3H41_19700 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D3H41_19715 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D3H41_19720 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D3H41_19720 PF13244 Domain of unknown function (DUF4040) D3H41_19720 PF00361 Proton-conducting membrane transporter D3H41_19720 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D3H41_19730 PF00582 Universal stress protein family D3H41_19735 PF00106 short chain dehydrogenase D3H41_19740 PF03466 LysR substrate binding domain D3H41_19740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_19750 PF07690 Major Facilitator Superfamily D3H41_19805 PF01037 Lrp/AsnC ligand binding domain D3H41_19840 PF00069 Protein kinase domain D3H41_19865 PF04717 Type VI secretion system, phage-baseplate injector D3H41_19870 PF05638 Type VI secretion system effector, Hcp D3H41_19875 PF17871 AAA lid domain D3H41_19875 PF00004 ATPase family associated with various cellular activities (AAA) D3H41_19875 PF07724 AAA domain (Cdc48 subfamily) D3H41_19875 PF10431 C-terminal, D2-small domain, of ClpB protein D3H41_19880 PF00158 Sigma-54 interaction domain D3H41_19880 PF00072 Response regulator receiver domain D3H41_19880 PF02954 Bacterial regulatory protein, Fis family D3H41_19905 PF08525 Opacity-associated protein A N-terminal motif D3H41_19905 PF01476 LysM domain D3H41_19905 PF01551 Peptidase family M23 D3H41_19910 PF00132 Bacterial transferase hexapeptide (six repeats) D3H41_19915 PF00144 Beta-lactamase D3H41_19920 PF00392 Bacterial regulatory proteins, gntR family D3H41_19920 PF00155 Aminotransferase class I and II D3H41_19935 PF02911 Formyl transferase, C-terminal domain D3H41_19935 PF00551 Formyl transferase D3H41_19935 PF01370 NAD dependent epimerase/dehydratase family D3H41_19955 PF01565 FAD binding domain D3H41_19955 PF08031 Berberine and berberine like D3H41_19965 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family D3H41_19970 PF00478 IMP dehydrogenase / GMP reductase domain D3H41_19975 PF03853 YjeF-related protein N-terminus D3H41_19975 PF01256 Carbohydrate kinase D3H41_19985 PF00072 Response regulator receiver domain D3H41_19990 PF00248 Aldo/keto reductase family D3H41_20005 PF00654 Voltage gated chloride channel D3H41_20015 PF01227 GTP cyclohydrolase I D3H41_20020 PF00994 Probable molybdopterin binding domain D3H41_20020 PF03453 MoeA N-terminal region (domain I and II) D3H41_20020 PF03454 MoeA C-terminal region (domain IV) D3H41_20025 PF00899 ThiF family D3H41_20040 PF00581 Rhodanese-like domain D3H41_20060 PF00923 Transaldolase/Fructose-6-phosphate aldolase D3H41_20065 PF02780 Transketolase, C-terminal domain D3H41_20065 PF00456 Transketolase, thiamine diphosphate binding domain D3H41_20065 PF02779 Transketolase, pyrimidine binding domain D3H41_20070 PF08447 PAS fold D3H41_20070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_20075 PF07690 Major Facilitator Superfamily D3H41_20080 PF00793 DAHP synthetase I family D3H41_20090 PF01389 OmpA-like transmembrane domain D3H41_20090 PF00691 OmpA family D3H41_20095 PF13419 Haloacid dehalogenase-like hydrolase D3H41_20100 PF00472 RF-1 domain D3H41_20105 PF12729 Four helix bundle sensory module for signal transduction D3H41_20105 PF00672 HAMP domain D3H41_20105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_20110 PF00873 AcrB/AcrD/AcrF family D3H41_20115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3H41_20120 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D3H41_20125 PF07687 Peptidase dimerisation domain D3H41_20125 PF01546 Peptidase family M20/M25/M40 D3H41_20140 PF00072 Response regulator receiver domain D3H41_20140 PF00196 Bacterial regulatory proteins, luxR family D3H41_20145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_20145 PF00672 HAMP domain D3H41_20145 PF07730 Histidine kinase D3H41_20145 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D3H41_20150 PF13187 4Fe-4S dicluster domain D3H41_20150 PF12838 4Fe-4S dicluster domain D3H41_20160 PF01568 Molydopterin dinucleotide binding domain D3H41_20160 PF00384 Molybdopterin oxidoreductase D3H41_20160 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3H41_20165 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) D3H41_20170 PF03264 NapC/NirT cytochrome c family, N-terminal region D3H41_20180 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus D3H41_20190 PF00108 Thiolase, N-terminal domain D3H41_20190 PF02803 Thiolase, C-terminal domain D3H41_20195 PF00106 short chain dehydrogenase D3H41_20200 PF01810 LysE type translocator D3H41_20210 PF07549 SecD/SecF GG Motif D3H41_20210 PF02355 Protein export membrane protein D3H41_20215 PF07549 SecD/SecF GG Motif D3H41_20215 PF02355 Protein export membrane protein D3H41_20215 PF13721 SecD export protein N-terminal TM region D3H41_20245 PF01037 Lrp/AsnC ligand binding domain D3H41_20265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3H41_20265 PF00529 HlyD membrane-fusion protein of T1SS D3H41_20270 PF01047 MarR family D3H41_20275 PF09308 LuxQ, periplasmic D3H41_20275 PF00512 His Kinase A (phospho-acceptor) domain D3H41_20275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_20275 PF00072 Response regulator receiver domain D3H41_20280 PF13407 Periplasmic binding protein domain D3H41_20290 PF01541 GIY-YIG catalytic domain D3H41_20295 PF04337 Protein of unknown function, DUF480 D3H41_20305 PF04363 Protein of unknown function (DUF496) D3H41_20310 PF01554 MatE D3H41_20315 PF00072 Response regulator receiver domain D3H41_20315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_20315 PF00512 His Kinase A (phospho-acceptor) domain D3H41_20315 PF01627 Hpt domain D3H41_20315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3H41_20315 PF00672 HAMP domain D3H41_20320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D3H41_20320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D3H41_20340 PF03466 LysR substrate binding domain D3H41_20340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_20355 PF13520 Amino acid permease D3H41_20360 PF00392 Bacterial regulatory proteins, gntR family D3H41_20360 PF00155 Aminotransferase class I and II D3H41_20370 PF00672 HAMP domain D3H41_20370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_20370 PF00512 His Kinase A (phospho-acceptor) domain D3H41_20370 PF16527 Two-component sensor protein CpxA, periplasmic domain D3H41_20375 PF00486 Transcriptional regulatory protein, C terminal D3H41_20375 PF00072 Response regulator receiver domain D3H41_20390 PF12833 Helix-turn-helix domain D3H41_20390 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term D3H41_20400 PF00529 HlyD membrane-fusion protein of T1SS D3H41_20400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3H41_20405 PF03109 ABC1 family D3H41_20410 PF00571 CBS domain D3H41_20410 PF03448 MgtE intracellular N domain D3H41_20410 PF01769 Divalent cation transporter D3H41_20415 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin D3H41_20420 PF07969 Amidohydrolase family D3H41_20425 PF01966 HD domain D3H41_20440 PF07690 Major Facilitator Superfamily D3H41_20450 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D3H41_20455 PF00255 Glutathione peroxidase D3H41_20470 PF01323 DSBA-like thioredoxin domain D3H41_20485 PF00072 Response regulator receiver domain D3H41_20485 PF00486 Transcriptional regulatory protein, C terminal D3H41_20490 PF16527 Two-component sensor protein CpxA, periplasmic domain D3H41_20490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_20490 PF00672 HAMP domain D3H41_20490 PF00512 His Kinase A (phospho-acceptor) domain D3H41_20500 PF01219 Prokaryotic diacylglycerol kinase D3H41_20505 PF00884 Sulfatase D3H41_20505 PF08019 Phosphoethanolamine transferase EptA/EptB D3H41_20510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3H41_20525 PF01734 Patatin-like phospholipase D3H41_20530 PF02678 Pirin D3H41_20530 PF05726 Pirin C-terminal cupin domain D3H41_20535 PF00313 'Cold-shock' DNA-binding domain D3H41_20550 PF00962 Adenosine/AMP deaminase D3H41_20555 PF00462 Glutaredoxin D3H41_20555 PF08534 Redoxin D3H41_20565 PF00768 D-alanyl-D-alanine carboxypeptidase D3H41_20565 PF07943 Penicillin-binding protein 5, C-terminal domain D3H41_20575 PF02798 Glutathione S-transferase, N-terminal domain D3H41_20585 PF08244 Glycosyl hydrolases family 32 C terminal D3H41_20585 PF00251 Glycosyl hydrolases family 32 N-terminal domain D3H41_20590 PF00294 pfkB family carbohydrate kinase D3H41_20595 PF02378 Phosphotransferase system, EIIC D3H41_20595 PF00367 phosphotransferase system, EIIB D3H41_20600 PF00356 Bacterial regulatory proteins, lacI family D3H41_20605 PF02264 LamB porin D3H41_20605 PF11471 Maltoporin periplasmic N-terminal extension D3H41_20655 PF03466 LysR substrate binding domain D3H41_20655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_20660 PF12833 Helix-turn-helix domain D3H41_20660 PF01497 Periplasmic binding protein D3H41_20665 PF00155 Aminotransferase class I and II D3H41_20690 PF00271 Helicase conserved C-terminal domain D3H41_20690 PF00270 DEAD/DEAH box helicase D3H41_20700 PF03466 LysR substrate binding domain D3H41_20700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_20705 PF03466 LysR substrate binding domain D3H41_20705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_20715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D3H41_20720 PF00107 Zinc-binding dehydrogenase D3H41_20720 PF08240 Alcohol dehydrogenase GroES-like domain D3H41_20740 PF00155 Aminotransferase class I and II D3H41_20740 PF00392 Bacterial regulatory proteins, gntR family D3H41_20745 PF01321 Creatinase/Prolidase N-terminal domain D3H41_20745 PF00557 Metallopeptidase family M24 D3H41_20750 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family D3H41_20755 PF01037 Lrp/AsnC ligand binding domain D3H41_20760 PF00171 Aldehyde dehydrogenase family D3H41_20765 PF00202 Aminotransferase class-III D3H41_20770 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) D3H41_20785 PF03466 LysR substrate binding domain D3H41_20785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_20795 PF00710 Asparaginase, N-terminal D3H41_20795 PF17763 Glutaminase/Asparaginase C-terminal domain D3H41_20800 PF03618 Kinase/pyrophosphorylase D3H41_20805 PF00391 PEP-utilising enzyme, mobile domain D3H41_20805 PF02896 PEP-utilising enzyme, TIM barrel domain D3H41_20805 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D3H41_20815 PF00072 Response regulator receiver domain D3H41_20815 PF00196 Bacterial regulatory proteins, luxR family D3H41_20820 PF00579 tRNA synthetases class I (W and Y) D3H41_20825 PF13416 Bacterial extracellular solute-binding protein D3H41_20840 PF00703 Glycosyl hydrolases family 2 D3H41_20840 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 D3H41_20840 PF02836 Glycosyl hydrolases family 2, TIM barrel domain D3H41_20840 PF02837 Glycosyl hydrolases family 2, sugar binding domain D3H41_20845 PF02028 BCCT, betaine/carnitine/choline family transporter D3H41_20850 PF00392 Bacterial regulatory proteins, gntR family D3H41_20850 PF07702 UTRA domain D3H41_20875 PF08402 TOBE domain D3H41_20875 PF00005 ABC transporter D3H41_20895 PF00873 AcrB/AcrD/AcrF family D3H41_20915 PF00873 AcrB/AcrD/AcrF family D3H41_20920 PF13533 Biotin-lipoyl like D3H41_20925 PF13091 PLD-like domain D3H41_20930 PF00398 Ribosomal RNA adenine dimethylase D3H41_20950 PF00376 MerR family regulatory protein D3H41_20950 PF09278 MerR, DNA binding D3H41_20965 PF03466 LysR substrate binding domain D3H41_20965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_20975 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D3H41_20975 PF13378 Enolase C-terminal domain-like D3H41_20985 PF00679 Elongation factor G C-terminus D3H41_20985 PF03144 Elongation factor Tu domain 2 D3H41_20985 PF00009 Elongation factor Tu GTP binding domain D3H41_20985 PF14492 Elongation Factor G, domain II D3H41_20985 PF03764 Elongation factor G, domain IV D3H41_21010 PF02001 Protein of unknown function DUF134 D3H41_21020 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_21025 PF00571 CBS domain D3H41_21025 PF00005 ABC transporter D3H41_21030 PF04170 NlpE N-terminal domain D3H41_21030 PF17185 NlpE C-terminal OB domain D3H41_21035 PF06629 MltA-interacting protein MipA D3H41_21050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_21050 PF03466 LysR substrate binding domain D3H41_21075 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family D3H41_21075 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain D3H41_21085 PF00857 Isochorismatase family D3H41_21100 PF00455 DeoR C terminal sensor domain D3H41_21100 PF08220 DeoR-like helix-turn-helix domain D3H41_21105 PF01625 Peptide methionine sulfoxide reductase D3H41_21105 PF01641 SelR domain D3H41_21110 PF03060 Nitronate monooxygenase D3H41_21115 PF13520 Amino acid permease D3H41_21120 PF05985 Ethanolamine ammonia-lyase light chain (EutC) D3H41_21125 PF06751 Ethanolamine ammonia lyase large subunit (EutB) D3H41_21130 PF12833 Helix-turn-helix domain D3H41_21135 PF08359 YsiA-like protein, C-terminal region D3H41_21135 PF00440 Bacterial regulatory proteins, tetR family D3H41_21150 PF03466 LysR substrate binding domain D3H41_21150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_21155 PF01810 LysE type translocator D3H41_21165 PF00118 TCP-1/cpn60 chaperonin family D3H41_21170 PF00166 Chaperonin 10 Kd subunit D3H41_21180 PF00581 Rhodanese-like domain D3H41_21195 PF01070 FMN-dependent dehydrogenase D3H41_21215 PF00669 Bacterial flagellin N-terminal helical region D3H41_21220 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3H41_21220 PF00460 Flagella basal body rod protein D3H41_21225 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D3H41_21225 PF10135 Rod binding protein D3H41_21230 PF02119 Flagellar P-ring protein D3H41_21235 PF02107 Flagellar L-ring protein D3H41_21240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3H41_21240 PF00460 Flagella basal body rod protein D3H41_21245 PF00460 Flagella basal body rod protein D3H41_21245 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3H41_21250 PF07559 Flagellar basal body protein FlaE D3H41_21250 PF00460 Flagella basal body rod protein D3H41_21250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3H41_21255 PF13861 FlgD Tudor-like domain D3H41_21255 PF13860 FlgD Ig-like domain D3H41_21255 PF03963 Flagellar hook capping protein - N-terminal region D3H41_21260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3H41_21260 PF00460 Flagella basal body rod protein D3H41_21265 PF00460 Flagella basal body rod protein D3H41_21285 PF01464 Transglycosylase SLT domain D3H41_21290 PF08264 Anticodon-binding domain of tRNA D3H41_21290 PF00133 tRNA synthetases class I (I, L, M and V) D3H41_21310 PF03313 Serine dehydratase alpha chain D3H41_21310 PF03315 Serine dehydratase beta chain D3H41_21320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_21320 PF03466 LysR substrate binding domain D3H41_21325 PF03466 LysR substrate binding domain D3H41_21325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_21330 PF01389 OmpA-like transmembrane domain D3H41_21330 PF00691 OmpA family D3H41_21335 PF18027 Cytosolic carboxypeptidase N-terminal domain D3H41_21335 PF00246 Zinc carboxypeptidase D3H41_21340 PF01266 FAD dependent oxidoreductase D3H41_21350 PF04393 Protein of unknown function (DUF535) D3H41_21365 PF07702 UTRA domain D3H41_21365 PF00392 Bacterial regulatory proteins, gntR family D3H41_21370 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_21375 PF00005 ABC transporter D3H41_21385 PF00266 Aminotransferase class-V D3H41_21395 PF13419 Haloacid dehalogenase-like hydrolase D3H41_21400 PF00356 Bacterial regulatory proteins, lacI family D3H41_21405 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D3H41_21415 PF03611 PTS system sugar-specific permease component D3H41_21430 PF00657 GDSL-like Lipase/Acylhydrolase D3H41_21435 PF00440 Bacterial regulatory proteins, tetR family D3H41_21445 PF02321 Outer membrane efflux protein D3H41_21450 PF12704 MacB-like periplasmic core domain D3H41_21450 PF02687 FtsX-like permease family D3H41_21450 PF00005 ABC transporter D3H41_21455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3H41_21460 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D3H41_21465 PF00194 Eukaryotic-type carbonic anhydrase D3H41_21470 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) D3H41_21485 PF13419 Haloacid dehalogenase-like hydrolase D3H41_21490 PF03466 LysR substrate binding domain D3H41_21490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_21525 PF14602 Hexapeptide repeat of succinyl-transferase D3H41_21525 PF12464 Maltose acetyltransferase D3H41_21530 PF02566 OsmC-like protein D3H41_21575 PF02566 OsmC-like protein D3H41_21580 PF01641 SelR domain D3H41_21580 PF01625 Peptide methionine sulfoxide reductase D3H41_21595 PF04244 Deoxyribodipyrimidine photo-lyase-related protein D3H41_21600 PF00875 DNA photolyase D3H41_21600 PF03441 FAD binding domain of DNA photolyase D3H41_21605 PF00990 Diguanylate cyclase, GGDEF domain D3H41_21620 PF05230 MASE2 domain D3H41_21620 PF00990 Diguanylate cyclase, GGDEF domain D3H41_21635 PF07662 Na+ dependent nucleoside transporter C-terminus D3H41_21635 PF01773 Na+ dependent nucleoside transporter N-terminus D3H41_21635 PF07670 Nucleoside recognition D3H41_21655 PF01212 Beta-eliminating lyase D3H41_21660 PF03116 NQR2, RnfD, RnfE family D3H41_21665 PF01654 Cytochrome bd terminal oxidase subunit I D3H41_21670 PF02322 Cytochrome bd terminal oxidase subunit II D3H41_21690 PF04229 GrpB protein D3H41_21695 PF01266 FAD dependent oxidoreductase D3H41_21715 PF05525 Branched-chain amino acid transport protein D3H41_21720 PF00990 Diguanylate cyclase, GGDEF domain D3H41_21725 PF00072 Response regulator receiver domain D3H41_21725 PF00158 Sigma-54 interaction domain D3H41_21725 PF02954 Bacterial regulatory protein, Fis family D3H41_21730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_21730 PF00512 His Kinase A (phospho-acceptor) domain D3H41_21730 PF02743 Cache domain D3H41_21735 PF00232 Glycosyl hydrolase family 1 D3H41_21750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_21750 PF03466 LysR substrate binding domain D3H41_21760 PF12706 Beta-lactamase superfamily domain D3H41_21775 PF08443 RimK-like ATP-grasp domain D3H41_21775 PF18030 RimK PreATP-grasp domain D3H41_21780 PF18030 RimK PreATP-grasp domain D3H41_21780 PF08443 RimK-like ATP-grasp domain D3H41_21785 PF00753 Metallo-beta-lactamase superfamily D3H41_21790 PF17810 Arginine decarboxylase helical bundle domain D3H41_21790 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D3H41_21790 PF17944 Arginine decarboxylase C-terminal helical extension D3H41_21795 PF00491 Arginase family D3H41_21800 PF07690 Major Facilitator Superfamily D3H41_21805 PF00326 Prolyl oligopeptidase family D3H41_21805 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain D3H41_21820 PF00950 ABC 3 transport family D3H41_21825 PF00005 ABC transporter D3H41_21830 PF01297 Zinc-uptake complex component A periplasmic D3H41_21875 PF02472 Biopolymer transport protein ExbD/TolR D3H41_21880 PF01618 MotA/TolQ/ExbB proton channel family D3H41_21885 PF01618 MotA/TolQ/ExbB proton channel family D3H41_21895 PF00593 TonB dependent receptor D3H41_21895 PF07715 TonB-dependent Receptor Plug Domain D3H41_21900 PF00672 HAMP domain D3H41_21900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_21900 PF00512 His Kinase A (phospho-acceptor) domain D3H41_21900 PF16750 Sensor domain of 2-component histidine kinase D3H41_21905 PF00072 Response regulator receiver domain D3H41_21905 PF00486 Transcriptional regulatory protein, C terminal D3H41_21910 PF03009 Glycerophosphoryl diester phosphodiesterase family D3H41_21920 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3H41_21920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3H41_21925 PF10928 Protein of unknown function (DUF2810) D3H41_21980 PF04013 Putative SAM-dependent RNA methyltransferase D3H41_21985 PF01523 Putative modulator of DNA gyrase D3H41_21990 PF01523 Putative modulator of DNA gyrase D3H41_21995 PF08543 Phosphomethylpyrimidine kinase D3H41_22000 PF00005 ABC transporter D3H41_22005 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_22010 PF09084 NMT1/THI5 like D3H41_22015 PF03070 TENA/THI-4/PQQC family D3H41_22020 PF02110 Hydroxyethylthiazole kinase family D3H41_22025 PF02581 Thiamine monophosphate synthase D3H41_22035 PF00384 Molybdopterin oxidoreductase D3H41_22035 PF18364 Molybdopterin oxidoreductase N-terminal domain D3H41_22035 PF01568 Molydopterin dinucleotide binding domain D3H41_22040 PF03264 NapC/NirT cytochrome c family, N-terminal region D3H41_22045 PF13302 Acetyltransferase (GNAT) domain D3H41_22065 PF00583 Acetyltransferase (GNAT) family D3H41_22085 PF00155 Aminotransferase class I and II D3H41_22085 PF00392 Bacterial regulatory proteins, gntR family D3H41_22090 PF02595 Glycerate kinase family D3H41_22095 PF02447 GntP family permease D3H41_22100 PF17853 GGDEF-like domain D3H41_22100 PF05651 Putative sugar diacid recognition D3H41_22100 PF13556 PucR C-terminal helix-turn-helix domain D3H41_22135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3H41_22140 PF12706 Beta-lactamase superfamily domain D3H41_22150 PF07690 Major Facilitator Superfamily D3H41_22155 PF13533 Biotin-lipoyl like D3H41_22160 PF03922 OmpW family D3H41_22165 PF13599 Pentapeptide repeats (9 copies) D3H41_22185 PF01037 Lrp/AsnC ligand binding domain D3H41_22190 PF01810 LysE type translocator D3H41_22195 PF04954 Siderophore-interacting protein D3H41_22195 PF08021 Siderophore-interacting FAD-binding domain D3H41_22200 PF03466 LysR substrate binding domain D3H41_22200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_22205 PF00797 N-acetyltransferase D3H41_22210 PF00107 Zinc-binding dehydrogenase D3H41_22210 PF08240 Alcohol dehydrogenase GroES-like domain D3H41_22215 PF00756 Putative esterase D3H41_22225 PF17152 Periplasmic sensor domain D3H41_22225 PF00990 Diguanylate cyclase, GGDEF domain D3H41_22240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_22240 PF03466 LysR substrate binding domain D3H41_22255 PF00849 RNA pseudouridylate synthase D3H41_22260 PF01554 MatE D3H41_22265 PF00990 Diguanylate cyclase, GGDEF domain D3H41_22265 PF00563 EAL domain D3H41_22275 PF06865 Pyrimidine/purine nucleoside phosphorylase D3H41_22285 PF00704 Glycosyl hydrolases family 18 D3H41_22285 PF08329 Chitinase A, N-terminal domain D3H41_22290 PF12697 Alpha/beta hydrolase family D3H41_22305 PF03600 Citrate transporter D3H41_22315 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 D3H41_22325 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D3H41_22325 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D3H41_22330 PF12833 Helix-turn-helix domain D3H41_22330 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D3H41_22330 PF02805 Metal binding domain of Ada D3H41_22330 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D3H41_22340 PF07681 DoxX D3H41_22345 PF17954 Quercetinase C-terminal cupin domain D3H41_22345 PF02678 Pirin D3H41_22350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_22350 PF03466 LysR substrate binding domain D3H41_22365 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D3H41_22375 PF03616 Sodium/glutamate symporter D3H41_22380 PF00392 Bacterial regulatory proteins, gntR family D3H41_22380 PF00155 Aminotransferase class I and II D3H41_22385 PF00005 ABC transporter D3H41_22395 PF03616 Sodium/glutamate symporter D3H41_22415 PF17200 Single Cache domain 2 D3H41_22415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_22415 PF00672 HAMP domain D3H41_22420 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D3H41_22425 PF00072 Response regulator receiver domain D3H41_22425 PF04397 LytTr DNA-binding domain D3H41_22430 PF07694 5TMR of 5TMR-LYT D3H41_22430 PF13492 GAF domain D3H41_22430 PF06580 Histidine kinase D3H41_22430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_22450 PF00005 ABC transporter D3H41_22460 PF01098 Cell cycle protein D3H41_22465 PF01709 Transcriptional regulator D3H41_22475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_22475 PF00512 His Kinase A (phospho-acceptor) domain D3H41_22475 PF17149 Periplasmic sensor domain found in signal transduction proteins D3H41_22475 PF00672 HAMP domain D3H41_22475 PF00072 Response regulator receiver domain D3H41_22475 PF01627 Hpt domain D3H41_22485 PF08719 Domain of unknown function (DUF1768) D3H41_22485 PF00925 GTP cyclohydrolase II D3H41_22495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_22495 PF00005 ABC transporter D3H41_22500 PF00005 ABC transporter D3H41_22500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_22515 PF13614 AAA domain D3H41_22515 PF18607 ParA helix turn helix domain D3H41_22520 PF02195 ParB-like nuclease domain D3H41_22520 PF08775 ParB family D3H41_22525 PF05127 Helicase D3H41_22525 PF13718 GNAT acetyltransferase 2 D3H41_22535 PF00132 Bacterial transferase hexapeptide (six repeats) D3H41_22540 PF03466 LysR substrate binding domain D3H41_22540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_22545 PF03575 Peptidase family S51 D3H41_22550 PF00267 Gram-negative porin D3H41_22555 PF00367 phosphotransferase system, EIIB D3H41_22555 PF02378 Phosphotransferase system, EIIC D3H41_22560 PF01380 SIS domain D3H41_22570 PF01418 Helix-turn-helix domain, rpiR family D3H41_22570 PF01380 SIS domain D3H41_22575 PF00246 Zinc carboxypeptidase D3H41_22580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3H41_22585 PF03358 NADPH-dependent FMN reductase D3H41_22595 PF00005 ABC transporter D3H41_22595 PF00664 ABC transporter transmembrane region D3H41_22595 PF03412 Peptidase C39 family D3H41_22610 PF00529 HlyD membrane-fusion protein of T1SS D3H41_22615 PF00158 Sigma-54 interaction domain D3H41_22615 PF00072 Response regulator receiver domain D3H41_22615 PF02954 Bacterial regulatory protein, Fis family D3H41_22620 PF02743 Cache domain D3H41_22620 PF00512 His Kinase A (phospho-acceptor) domain D3H41_22620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_22625 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D3H41_22625 PF01243 Pyridoxamine 5'-phosphate oxidase D3H41_22635 PF12833 Helix-turn-helix domain D3H41_22640 PF00171 Aldehyde dehydrogenase family D3H41_22640 PF01619 Proline dehydrogenase D3H41_22640 PF14850 DNA-binding domain of Proline dehydrogenase D3H41_22640 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D3H41_22650 PF00474 Sodium:solute symporter family D3H41_22680 PF01037 Lrp/AsnC ligand binding domain D3H41_22690 PF00005 ABC transporter D3H41_22690 PF00664 ABC transporter transmembrane region D3H41_22700 PF00270 DEAD/DEAH box helicase D3H41_22700 PF00271 Helicase conserved C-terminal domain D3H41_22705 PF03473 MOSC domain D3H41_22705 PF03475 3-alpha domain D3H41_22725 PF04542 Sigma-70 region 2 D3H41_22725 PF08281 Sigma-70, region 4 D3H41_22730 PF01965 DJ-1/PfpI family D3H41_22730 PF12833 Helix-turn-helix domain D3H41_22740 PF03466 LysR substrate binding domain D3H41_22740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_22770 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_22770 PF13192 Thioredoxin domain D3H41_22775 PF00578 AhpC/TSA family D3H41_22775 PF10417 C-terminal domain of 1-Cys peroxiredoxin D3H41_22780 PF01047 MarR family D3H41_22785 PF02566 OsmC-like protein D3H41_22820 PF00005 ABC transporter D3H41_22835 PF00535 Glycosyl transferase family 2 D3H41_22845 PF08241 Methyltransferase domain D3H41_22865 PF02378 Phosphotransferase system, EIIC D3H41_22865 PF00367 phosphotransferase system, EIIB D3H41_22875 PF00072 Response regulator receiver domain D3H41_22875 PF00486 Transcriptional regulatory protein, C terminal D3H41_22880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_22880 PF00512 His Kinase A (phospho-acceptor) domain D3H41_22880 PF08521 Two-component sensor kinase N-terminal D3H41_22885 PF01547 Bacterial extracellular solute-binding protein D3H41_22890 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D3H41_22890 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D3H41_22895 PF06276 Ferric iron reductase FhuF-like transporter D3H41_22895 PF04183 IucA / IucC family D3H41_22905 PF06276 Ferric iron reductase FhuF-like transporter D3H41_22905 PF04183 IucA / IucC family D3H41_22910 PF00206 Lyase D3H41_22910 PF02655 ATP-grasp domain D3H41_22915 PF00593 TonB dependent receptor D3H41_22915 PF07715 TonB-dependent Receptor Plug Domain D3H41_22920 PF07715 TonB-dependent Receptor Plug Domain D3H41_22920 PF07660 Secretin and TonB N terminus short domain D3H41_22920 PF00593 TonB dependent receptor D3H41_22925 PF01497 Periplasmic binding protein D3H41_22930 PF01032 FecCD transport family D3H41_22935 PF01032 FecCD transport family D3H41_22940 PF00005 ABC transporter D3H41_22945 PF00672 HAMP domain D3H41_22945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_22945 PF17200 Single Cache domain 2 D3H41_22950 PF00675 Insulinase (Peptidase family M16) D3H41_22950 PF05193 Peptidase M16 inactive domain D3H41_22960 PF01551 Peptidase family M23 D3H41_22960 PF04225 Opacity-associated protein A LysM-like domain D3H41_22975 PF07690 Major Facilitator Superfamily D3H41_22980 PF00239 Resolvase, N terminal domain D3H41_22980 PF02796 Helix-turn-helix domain of resolvase D3H41_22985 PF00356 Bacterial regulatory proteins, lacI family D3H41_22990 PF00474 Sodium:solute symporter family D3H41_23005 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3H41_23015 PF03480 Bacterial extracellular solute-binding protein, family 7 D3H41_23020 PF00356 Bacterial regulatory proteins, lacI family D3H41_23025 PF03328 HpcH/HpaI aldolase/citrate lyase family D3H41_23045 PF12697 Alpha/beta hydrolase family D3H41_23060 PF07690 Major Facilitator Superfamily D3H41_23065 PF00474 Sodium:solute symporter family D3H41_23070 PF03315 Serine dehydratase beta chain D3H41_23070 PF03313 Serine dehydratase alpha chain D3H41_23075 PF00128 Alpha amylase, catalytic domain D3H41_23075 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D3H41_23080 PF02264 LamB porin D3H41_23100 PF02903 Alpha amylase, N-terminal ig-like domain D3H41_23100 PF16657 Maltogenic Amylase, C-terminal domain D3H41_23100 PF00128 Alpha amylase, catalytic domain D3H41_23105 PF04231 Endonuclease I D3H41_23110 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D3H41_23110 PF03714 Bacterial pullanase-associated domain D3H41_23110 PF18494 Pullulanase Ins domain D3H41_23110 PF11852 Domain of unknown function (DUF3372) D3H41_23110 PF17967 Pullulanase N2 domain D3H41_23125 PF01276 Orn/Lys/Arg decarboxylase, major domain D3H41_23125 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D3H41_23125 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain D3H41_23130 PF13520 Amino acid permease D3H41_23140 PF08543 Phosphomethylpyrimidine kinase D3H41_23145 PF00375 Sodium:dicarboxylate symporter family D3H41_23150 PF03193 RsgA GTPase D3H41_23155 PF02378 Phosphotransferase system, EIIC D3H41_23155 PF00367 phosphotransferase system, EIIB D3H41_23160 PF02630 SCO1/SenC D3H41_23175 PF00196 Bacterial regulatory proteins, luxR family D3H41_23175 PF17874 MalT-like TPR region D3H41_23180 PF00343 Carbohydrate phosphorylase D3H41_23185 PF02446 4-alpha-glucanotransferase D3H41_23190 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D3H41_23190 PF02806 Alpha amylase, C-terminal all-beta domain D3H41_23190 PF00128 Alpha amylase, catalytic domain D3H41_23195 PF00912 Transglycosylase D3H41_23200 PF00128 Alpha amylase, catalytic domain D3H41_23215 PF07670 Nucleoside recognition D3H41_23220 PF07670 Nucleoside recognition D3H41_23225 PF07687 Peptidase dimerisation domain D3H41_23225 PF01546 Peptidase family M20/M25/M40 D3H41_23230 PF06803 Protein of unknown function (DUF1232) D3H41_23245 PF00375 Sodium:dicarboxylate symporter family D3H41_23255 PF03466 LysR substrate binding domain D3H41_23255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_23260 PF08803 Putative mono-oxygenase ydhR D3H41_23270 PF02706 Chain length determinant protein D3H41_23270 PF13614 AAA domain D3H41_23270 PF13807 G-rich domain on putative tyrosine kinase D3H41_23275 PF01451 Low molecular weight phosphotyrosine protein phosphatase D3H41_23280 PF18412 Outer-membrane lipoprotein Wza C-terminal domain D3H41_23280 PF02563 Polysaccharide biosynthesis/export protein D3H41_23280 PF10531 SLBB domain D3H41_23285 PF00881 Nitroreductase family D3H41_23290 PF01914 MarC family integral membrane protein D3H41_23295 PF01734 Patatin-like phospholipase D3H41_23300 PF18416 N-acetylglucosamine binding protein domain 2 D3H41_23300 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading D3H41_23305 PF02469 Fasciclin domain D3H41_23310 PF03441 FAD binding domain of DNA photolyase D3H41_23310 PF00875 DNA photolyase D3H41_23325 PF00561 alpha/beta hydrolase fold D3H41_23330 PF07943 Penicillin-binding protein 5, C-terminal domain D3H41_23330 PF00768 D-alanyl-D-alanine carboxypeptidase D3H41_23335 PF00128 Alpha amylase, catalytic domain D3H41_23335 PF00686 Starch binding domain D3H41_23340 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term D3H41_23340 PF12833 Helix-turn-helix domain D3H41_23345 PF00881 Nitroreductase family D3H41_23355 PF03466 LysR substrate binding domain D3H41_23355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_23360 PF09905 DNA-binding protein VF530 D3H41_23370 PF00970 Oxidoreductase FAD-binding domain D3H41_23370 PF00175 Oxidoreductase NAD-binding domain D3H41_23380 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) D3H41_23385 PF01594 AI-2E family transporter D3H41_23395 PF13533 Biotin-lipoyl like D3H41_23420 PF00892 EamA-like transporter family D3H41_23425 PF03466 LysR substrate binding domain D3H41_23425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_23430 PF07690 Major Facilitator Superfamily D3H41_23445 PF00583 Acetyltransferase (GNAT) family D3H41_23455 PF00072 Response regulator receiver domain D3H41_23455 PF00486 Transcriptional regulatory protein, C terminal D3H41_23460 PF00672 HAMP domain D3H41_23460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_23460 PF00512 His Kinase A (phospho-acceptor) domain D3H41_23480 PF00923 Transaldolase/Fructose-6-phosphate aldolase D3H41_23485 PF04055 Radical SAM superfamily D3H41_23510 PF08000 Bacterial PH domain D3H41_23525 PF00691 OmpA family D3H41_23525 PF13677 Membrane MotB of proton-channel complex MotA/MotB D3H41_23530 PF01618 MotA/TolQ/ExbB proton channel family D3H41_23535 PF04545 Sigma-70, region 4 D3H41_23535 PF04542 Sigma-70 region 2 D3H41_23540 PF03748 Flagellar basal body-associated protein FliL D3H41_23555 PF02561 Flagellar protein FliS D3H41_23560 PF02465 Flagellar hook-associated protein 2 N-terminus D3H41_23560 PF07196 Flagellin hook IN motif D3H41_23560 PF07195 Flagellar hook-associated protein 2 C-terminus D3H41_23575 PF00669 Bacterial flagellin N-terminal helical region D3H41_23575 PF00700 Bacterial flagellin C-terminal helical region D3H41_23585 PF00771 FHIPEP family D3H41_23590 PF01312 FlhB HrpN YscU SpaS Family D3H41_23595 PF01311 Bacterial export proteins, family 1 D3H41_23600 PF01313 Bacterial export proteins, family 3 D3H41_23605 PF00813 FliP family D3H41_23610 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D3H41_23625 PF02954 Bacterial regulatory protein, Fis family D3H41_23625 PF00158 Sigma-54 interaction domain D3H41_23625 PF00072 Response regulator receiver domain D3H41_23630 PF02049 Flagellar hook-basal body complex protein FliE D3H41_23635 PF01514 Secretory protein of YscJ/FliF family D3H41_23635 PF08345 Flagellar M-ring protein C-terminal D3H41_23640 PF01706 FliG C-terminal domain D3H41_23640 PF14841 FliG middle domain D3H41_23640 PF14842 FliG N-terminal domain D3H41_23650 PF18269 T3SS EscN ATPase C-terminal domain D3H41_23650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3H41_23665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_23665 PF03466 LysR substrate binding domain D3H41_23700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3H41_23705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_23705 PF03466 LysR substrate binding domain D3H41_23725 PF00486 Transcriptional regulatory protein, C terminal D3H41_23725 PF00072 Response regulator receiver domain D3H41_23730 PF13426 PAS domain D3H41_23730 PF08448 PAS fold D3H41_23730 PF00072 Response regulator receiver domain D3H41_23730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_23730 PF00512 His Kinase A (phospho-acceptor) domain D3H41_23735 PF00080 Copper/zinc superoxide dismutase (SODC) D3H41_23750 PF00563 EAL domain D3H41_23750 PF00990 Diguanylate cyclase, GGDEF domain D3H41_23750 PF03707 Bacterial signalling protein N terminal repeat D3H41_23750 PF13188 PAS domain D3H41_23755 PF00155 Aminotransferase class I and II D3H41_23760 PF00107 Zinc-binding dehydrogenase D3H41_23760 PF08240 Alcohol dehydrogenase GroES-like domain D3H41_23790 PF00194 Eukaryotic-type carbonic anhydrase D3H41_23795 PF00924 Mechanosensitive ion channel D3H41_23805 PF01070 FMN-dependent dehydrogenase D3H41_23810 PF02652 L-lactate permease D3H41_23815 PF03466 LysR substrate binding domain D3H41_23815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_23820 PF00326 Prolyl oligopeptidase family D3H41_23820 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain D3H41_23825 PF00005 ABC transporter D3H41_23825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_23835 PF05362 Lon protease (S16) C-terminal proteolytic domain D3H41_23835 PF13654 AAA domain D3H41_23840 PF12729 Four helix bundle sensory module for signal transduction D3H41_23840 PF00672 HAMP domain D3H41_23840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_23845 PF13609 Gram-negative porin D3H41_23850 PF07238 PilZ domain D3H41_23850 PF12945 Flagellar protein YcgR D3H41_23865 PF00583 Acetyltransferase (GNAT) family D3H41_23870 PF12838 4Fe-4S dicluster domain D3H41_23870 PF12800 4Fe-4S binding domain D3H41_23875 PF12801 4Fe-4S binding domain D3H41_23875 PF13237 4Fe-4S dicluster domain D3H41_23895 PF00005 ABC transporter D3H41_23895 PF12558 ATP-binding cassette cobalt transporter D3H41_23900 PF07155 ECF-type riboflavin transporter, S component D3H41_23905 PF00529 HlyD membrane-fusion protein of T1SS D3H41_23905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3H41_23910 PF11742 Protein of unknown function (DUF3302) D3H41_23930 PF01048 Phosphorylase superfamily D3H41_23935 PF08349 Protein of unknown function (DUF1722) D3H41_23940 PF13411 MerR HTH family regulatory protein D3H41_23945 PF03441 FAD binding domain of DNA photolyase D3H41_23945 PF00875 DNA photolyase D3H41_23950 PF17969 L,D-transpeptidase C-terminal domain D3H41_23950 PF01476 LysM domain D3H41_23950 PF03734 L,D-transpeptidase catalytic domain D3H41_23960 PF00271 Helicase conserved C-terminal domain D3H41_23960 PF00270 DEAD/DEAH box helicase D3H41_23965 PF00326 Prolyl oligopeptidase family D3H41_23965 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain D3H41_23970 PF00593 TonB dependent receptor D3H41_23970 PF07715 TonB-dependent Receptor Plug Domain D3H41_23990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_23990 PF00672 HAMP domain D3H41_23990 PF12729 Four helix bundle sensory module for signal transduction D3H41_23995 PF12849 PBP superfamily domain D3H41_24000 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_24005 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_24010 PF00005 ABC transporter D3H41_24030 PF13519 von Willebrand factor type A domain D3H41_24035 PF13519 von Willebrand factor type A domain D3H41_24045 PF01882 Protein of unknown function DUF58 D3H41_24050 PF07726 ATPase family associated with various cellular activities (AAA) D3H41_24050 PF17863 AAA lid domain D3H41_24055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_24055 PF00672 HAMP domain D3H41_24055 PF02743 Cache domain D3H41_24065 PF00196 Bacterial regulatory proteins, luxR family D3H41_24070 PF00196 Bacterial regulatory proteins, luxR family D3H41_24080 PF00005 ABC transporter D3H41_24080 PF00664 ABC transporter transmembrane region D3H41_24085 PF00529 HlyD membrane-fusion protein of T1SS D3H41_24095 PF01032 FecCD transport family D3H41_24100 PF01497 Periplasmic binding protein D3H41_24105 PF00005 ABC transporter D3H41_24110 PF07715 TonB-dependent Receptor Plug Domain D3H41_24110 PF00593 TonB dependent receptor D3H41_24115 PF00664 ABC transporter transmembrane region D3H41_24115 PF00005 ABC transporter D3H41_24120 PF00512 His Kinase A (phospho-acceptor) domain D3H41_24120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_24125 PF00486 Transcriptional regulatory protein, C terminal D3H41_24125 PF00072 Response regulator receiver domain D3H41_24130 PF02254 TrkA-N domain D3H41_24130 PF02080 TrkA-C domain D3H41_24135 PF02386 Cation transport protein D3H41_24140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_24140 PF03466 LysR substrate binding domain D3H41_24145 PF02028 BCCT, betaine/carnitine/choline family transporter D3H41_24150 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D3H41_24150 PF00355 Rieske [2Fe-2S] domain D3H41_24160 PF18113 Rubredoxin binding C-terminal domain D3H41_24160 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_24165 PF01266 FAD dependent oxidoreductase D3H41_24175 PF00127 Copper binding proteins, plastocyanin/azurin family D3H41_24180 PF13419 Haloacid dehalogenase-like hydrolase D3H41_24190 PF01590 GAF domain D3H41_24190 PF00158 Sigma-54 interaction domain D3H41_24195 PF00753 Metallo-beta-lactamase superfamily D3H41_24195 PF00258 Flavodoxin D3H41_24195 PF00301 Rubredoxin D3H41_24200 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3H41_24200 PF18113 Rubredoxin binding C-terminal domain D3H41_24210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3H41_24210 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3H41_24215 PF06628 Catalase-related immune-responsive D3H41_24215 PF00199 Catalase D3H41_24220 PF13417 Glutathione S-transferase, N-terminal domain D3H41_24225 PF16884 N-terminal domain of oxidoreductase D3H41_24225 PF00107 Zinc-binding dehydrogenase D3H41_24230 PF16925 Tetracyclin repressor-like, C-terminal domain D3H41_24230 PF00440 Bacterial regulatory proteins, tetR family D3H41_24265 PF00534 Glycosyl transferases group 1 D3H41_24265 PF13439 Glycosyltransferase Family 4 D3H41_24275 PF13614 AAA domain D3H41_24275 PF13807 G-rich domain on putative tyrosine kinase D3H41_24275 PF02706 Chain length determinant protein D3H41_24290 PF02397 Bacterial sugar transferase D3H41_24295 PF00005 ABC transporter D3H41_24295 PF08402 TOBE domain D3H41_24300 PF01547 Bacterial extracellular solute-binding protein D3H41_24305 PF14785 Maltose transport system permease protein MalF P2 domain D3H41_24305 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_24310 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_24340 PF05661 Protein of unknown function (DUF808) D3H41_24345 PF01979 Amidohydrolase family D3H41_24355 PF01679 Proteolipid membrane potential modulator D3H41_24360 PF03473 MOSC domain D3H41_24360 PF00111 2Fe-2S iron-sulfur cluster binding domain D3H41_24360 PF00111 2Fe-2S iron-sulfur cluster binding domain D3H41_24360 PF03476 MOSC N-terminal beta barrel domain D3H41_24360 PF03476 MOSC N-terminal beta barrel domain D3H41_24360 PF03473 MOSC domain D3H41_24365 PF02540 NAD synthase D3H41_24370 PF01467 Cytidylyltransferase-like D3H41_24410 PF00005 ABC transporter D3H41_24415 PF01032 FecCD transport family D3H41_24425 PF02472 Biopolymer transport protein ExbD/TolR D3H41_24430 PF01618 MotA/TolQ/ExbB proton channel family D3H41_24435 PF03544 Gram-negative bacterial TonB protein C-terminal D3H41_24440 PF04055 Radical SAM superfamily D3H41_24445 PF06228 Haem utilisation ChuX/HutX D3H41_24450 PF01243 Pyridoxamine 5'-phosphate oxidase D3H41_24460 PF00072 Response regulator receiver domain D3H41_24460 PF01584 CheW-like domain D3H41_24470 PF07508 Recombinase D3H41_24470 PF00239 Resolvase, N terminal domain D3H41_24470 PF13408 Recombinase zinc beta ribbon domain D3H41_24475 PF00239 Resolvase, N terminal domain D3H41_24475 PF02796 Helix-turn-helix domain of resolvase D3H41_24500 PF01554 MatE D3H41_24505 PF00005 ABC transporter D3H41_24505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_24510 PF00005 ABC transporter D3H41_24510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3H41_24515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3H41_24520 PF00528 Binding-protein-dependent transport system inner membrane component D3H41_24525 PF08220 DeoR-like helix-turn-helix domain D3H41_24525 PF00455 DeoR C terminal sensor domain D3H41_24530 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3H41_24530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3H41_24535 PF07005 Sugar-binding N-terminal domain D3H41_24535 PF17042 Nucleotide-binding C-terminal domain D3H41_24540 PF00596 Class II Aldolase and Adducin N-terminal domain D3H41_24545 PF01261 Xylose isomerase-like TIM barrel D3H41_24550 PF01370 NAD dependent epimerase/dehydratase family D3H41_24555 PF02447 GntP family permease D3H41_24560 PF02583 Metal-sensitive transcriptional repressor D3H41_24565 PF03824 High-affinity nickel-transport protein D3H41_24570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_24570 PF00672 HAMP domain D3H41_24570 PF02743 Cache domain D3H41_24575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_24575 PF03466 LysR substrate binding domain D3H41_24580 PF17848 Acetyl-coA carboxylase zinc finger domain D3H41_24580 PF01039 Carboxyl transferase domain D3H41_24590 PF08453 Peptidase family M9 N-terminal D3H41_24590 PF04151 Bacterial pre-peptidase C-terminal domain D3H41_24590 PF01752 Collagenase D3H41_24600 PF02627 Carboxymuconolactone decarboxylase family D3H41_24605 PF13411 MerR HTH family regulatory protein D3H41_24610 PF00128 Alpha amylase, catalytic domain D3H41_24625 PF00999 Sodium/hydrogen exchanger family D3H41_24625 PF02254 TrkA-N domain D3H41_24630 PF02525 Flavodoxin-like fold D3H41_24635 PF00582 Universal stress protein family D3H41_24640 PF00005 ABC transporter D3H41_24640 PF12848 ABC transporter D3H41_24640 PF16326 ABC transporter C-terminal domain D3H41_24645 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain D3H41_24645 PF00326 Prolyl oligopeptidase family D3H41_24655 PF13533 Biotin-lipoyl like D3H41_24660 PF00873 AcrB/AcrD/AcrF family D3H41_24675 PF13302 Acetyltransferase (GNAT) domain D3H41_24685 PF00990 Diguanylate cyclase, GGDEF domain D3H41_24685 PF17151 Periplasmic sensor domain D3H41_24700 PF00873 AcrB/AcrD/AcrF family D3H41_24705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3H41_24720 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D3H41_24720 PF12838 4Fe-4S dicluster domain D3H41_24720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3H41_24720 PF01568 Molydopterin dinucleotide binding domain D3H41_24720 PF00384 Molybdopterin oxidoreductase D3H41_24735 PF00005 ABC transporter D3H41_24745 PF02567 Phenazine biosynthesis-like protein D3H41_24750 PF01161 Phosphatidylethanolamine-binding protein D3H41_24760 PF01758 Sodium Bile acid symporter family D3H41_24775 PF01638 HxlR-like helix-turn-helix D3H41_24795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_24795 PF03466 LysR substrate binding domain D3H41_24800 PF00248 Aldo/keto reductase family D3H41_24805 PF03928 Haem-degrading D3H41_24825 PF03222 Tryptophan/tyrosine permease family D3H41_24835 PF02743 Cache domain D3H41_24835 PF00672 HAMP domain D3H41_24835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_24865 PF01476 LysM domain D3H41_24865 PF08525 Opacity-associated protein A N-terminal motif D3H41_24865 PF01551 Peptidase family M23 D3H41_24870 PF08447 PAS fold D3H41_24870 PF08448 PAS fold D3H41_24870 PF00990 Diguanylate cyclase, GGDEF domain D3H41_24870 PF00563 EAL domain D3H41_24875 PF03466 LysR substrate binding domain D3H41_24875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_24880 PF07690 Major Facilitator Superfamily D3H41_24895 PF00462 Glutaredoxin D3H41_24900 PF00892 EamA-like transporter family D3H41_24905 PF00267 Gram-negative porin D3H41_24915 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3H41_24935 PF01810 LysE type translocator D3H41_24945 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3H41_24945 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3H41_24945 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3H41_24945 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3H41_24950 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D3H41_24950 PF02790 Cytochrome C oxidase subunit II, transmembrane domain D3H41_24955 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3H41_24960 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 D3H41_24965 PF00510 Cytochrome c oxidase subunit III D3H41_24985 PF02628 Cytochrome oxidase assembly protein D3H41_24990 PF01040 UbiA prenyltransferase family D3H41_24995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D3H41_24995 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D3H41_25005 PF00691 OmpA family D3H41_25005 PF05736 OprF membrane domain D3H41_25025 PF00313 'Cold-shock' DNA-binding domain D3H41_25030 PF03889 Alternative ribosome-rescue factor A D3H41_25035 PF00990 Diguanylate cyclase, GGDEF domain D3H41_25040 PF04545 Sigma-70, region 4 D3H41_25040 PF04539 Sigma-70 region 3 D3H41_25040 PF04542 Sigma-70 region 2 D3H41_25040 PF00140 Sigma-70 factor, region 1.2 D3H41_25050 PF00005 ABC transporter D3H41_25055 PF00005 ABC transporter D3H41_25055 PF00664 ABC transporter transmembrane region D3H41_25060 PF02321 Outer membrane efflux protein D3H41_25065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3H41_25065 PF00072 Response regulator receiver domain D3H41_25070 PF13533 Biotin-lipoyl like D3H41_25090 PF00672 HAMP domain D3H41_25090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3H41_25090 PF12729 Four helix bundle sensory module for signal transduction D3H41_25095 PF00210 Ferritin-like domain D3H41_25105 PF07995 Glucose / Sorbosone dehydrogenase D3H41_25110 PF00465 Iron-containing alcohol dehydrogenase D3H41_25120 PF00892 EamA-like transporter family D3H41_25130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3H41_25130 PF03466 LysR substrate binding domain D3H41_25140 PF00501 AMP-binding enzyme D3H41_25140 PF13193 AMP-binding enzyme C-terminal domain D3H41_25145 PF00351 Biopterin-dependent aromatic amino acid hydroxylase D3H41_25150 PF01329 Pterin 4 alpha carbinolamine dehydratase D3H41_25170 PF12843 Putative quorum-sensing-regulated virulence factor D3H41_25180 PF01810 LysE type translocator D3H41_25185 PF00392 Bacterial regulatory proteins, gntR family D3H41_25185 PF07729 FCD domain D3H41_25200 PF01810 LysE type translocator